Citrus Sinensis ID: 015771
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 400 | 2.2.26 [Sep-21-2011] | |||||||
| Q3U2U7 | 461 | Methyltransferase-like pr | yes | no | 0.51 | 0.442 | 0.320 | 5e-20 | |
| Q2TBP8 | 462 | Methyltransferase-like pr | yes | no | 0.512 | 0.443 | 0.318 | 3e-19 | |
| Q9H7H0 | 456 | Methyltransferase-like pr | yes | no | 0.507 | 0.445 | 0.319 | 2e-18 | |
| Q86ZU7 | 753 | Rsm22-cox11 tandem protei | yes | no | 0.43 | 0.228 | 0.302 | 5e-11 | |
| Q9UTM2 | 753 | Rsm22-cox11 tandem protei | yes | no | 0.43 | 0.228 | 0.302 | 5e-11 | |
| P36056 | 628 | 37S ribosomal protein S22 | yes | no | 0.65 | 0.414 | 0.260 | 1e-09 |
| >sp|Q3U2U7|MET17_MOUSE Methyltransferase-like protein 17, mitochondrial OS=Mus musculus GN=Mettl17 PE=2 SV=2 | Back alignment and function desciption |
|---|
Score = 99.4 bits (246), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 78/243 (32%), Positives = 111/243 (45%), Gaps = 39/243 (16%)
Query: 25 RLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDL-- 82
R+P F P ++DFG+GTGS WA W +SL + V+ S +M + L++G +
Sbjct: 181 RIPEFRPQTLMDFGSGTGSVAWAAHRTWGQSLREYVCVDSSAAMLGLAEKLLKGGSESGK 240
Query: 83 PLIHSYNSIQALNKDISKSEREHDLVIASYVLGEVPSLQDRITIVRQLWDLTRDVLVLVE 142
P I Q L + + D+V+++Y L E+PS DRI +++ LW T LVLVE
Sbjct: 241 PCIPGVFFRQFLPVS---PKVQFDVVVSAYALSELPSRADRIEVIQNLWRKTSHFLVLVE 297
Query: 143 PGTPQGSSIISQMRSHILWMEKRKSRKYEARKSKDTNKETSKDLVTLRSGVHIVAPCPHE 202
GT G ++ R+ +L E K + LR + APCPHE
Sbjct: 298 NGTKAGHRLLMDARNLVL-------------------GEKEKSPLDLRPSF-VFAPCPHE 337
Query: 203 GRCPLENSGK--YCHFVQRLQRTTSQRAYKRSKSEPLRGFEDEKFSFVAFRRGERPRE-- 258
CP N+ K C F Q AY + ++E FS V RG P+E
Sbjct: 338 LPCPQLNASKSLACSFSQ---------AYHPIPFNWNKKPKEEIFSMVILARGS-PKEAN 387
Query: 259 RWP 261
RWP
Sbjct: 388 RWP 390
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May be a component of the mitochondrial small ribosomal subunit. Mus musculus (taxid: 10090) EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: - |
| >sp|Q2TBP8|MET17_BOVIN Methyltransferase-like protein 17, mitochondrial OS=Bos taurus GN=METTL17 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 96.7 bits (239), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 77/242 (31%), Positives = 109/242 (45%), Gaps = 37/242 (15%)
Query: 25 RLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQG--PKDL 82
RLP F P ++DFG+GTGS WA W +SL + V+ S +M + L++G +
Sbjct: 181 RLPEFQPQTLMDFGSGTGSVTWAAHSTWGQSLREYMCVDSSAAMLELAEKLLKGGSGSGM 240
Query: 83 PLIHSYNSIQALNKDISKSEREHDLVIASYVLGEVPSLQDRITIVRQLWDLTRDVLVLVE 142
P + Q L + + D+V+A++ L E+PS DR +V+ LW T LVL+E
Sbjct: 241 PCVPGVFFRQFLPVS---PKVQFDVVVAAFSLSELPSKADRTDVVQTLWRKTGHFLVLIE 297
Query: 143 PGTPQGSSIISQMRSHILWMEKRKSRKYEARKSKDTNKETSKDLVTLRSGVHIVAPCPHE 202
GT G S++ R +L KE S + R G + APCPHE
Sbjct: 298 NGTKAGHSLLMDARDLVL-----------------NGKEKSP--LDPRPGF-VFAPCPHE 337
Query: 203 GRCPLENSGK--YCHFVQRLQRTTSQRAYKRSKSEPLRGFEDEKFSFVAFRRGERPR-ER 259
CP + K C F Q AY + ++EKFS V RG + R
Sbjct: 338 LPCPQLTASKPLACSFSQ---------AYYPIPFSWNKKPKEEKFSLVILARGSPEKANR 388
Query: 260 WP 261
WP
Sbjct: 389 WP 390
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May be a component of the mitochondrial small ribosomal subunit. Bos taurus (taxid: 9913) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|Q9H7H0|MET17_HUMAN Methyltransferase-like protein 17, mitochondrial OS=Homo sapiens GN=METTL17 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 94.0 bits (232), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 77/241 (31%), Positives = 109/241 (45%), Gaps = 38/241 (15%)
Query: 25 RLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDL-- 82
R P F P ++DFG+GTGS WA +W +SL + V+ S +M + L++G +
Sbjct: 180 RNPAFQPQTLMDFGSGTGSVTWAAHSIWGQSLREYMCVDRSAAMLVLAEKLLKGGSESGE 239
Query: 83 PLIHSYNSIQALNKDISKSEREHDLVIASYVLGEVPSLQDRITIVRQLWDLTRDVLVLVE 142
P I Q L + + D+V++++ L E+PS DR +V+ LW T LVLVE
Sbjct: 240 PYIPGVFFRQFLPVS---PKVQFDVVVSAFSLSELPSKADRTEVVQTLWRKTGHFLVLVE 296
Query: 143 PGTPQGSSIISQMRSHILWMEKRKSRKYEARKSKDTNKETSKDLVTLRSGVHIVAPCPHE 202
GT G S++ R +L K K + R G + APCPHE
Sbjct: 297 NGTKAGHSLLMDARDLVL-------------------KGKEKSPLDPRPGF-VFAPCPHE 336
Query: 203 GRCPLENSGKYCHFVQRLQRTTSQRAYKRSKSEPLRGFEDEKFSFVAFRRGERPRE--RW 260
CP + + C F Q AY + ++EKFS V RG P E RW
Sbjct: 337 LPCP-QLTNLACSFSQ---------AYHPIPFSWNKKPKEEKFSMVILARGS-PEEAHRW 385
Query: 261 P 261
P
Sbjct: 386 P 386
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May be a component of the mitochondrial small ribosomal subunit. Homo sapiens (taxid: 9606) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|Q86ZU7|CO112_SCHPO Rsm22-cox11 tandem protein 2, mitochondrial OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=cos1102 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 69.3 bits (168), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 62/205 (30%), Positives = 95/205 (46%), Gaps = 33/205 (16%)
Query: 34 VLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQG--PKDLPLIHSYNSI 91
+LD G G G A V+P + V++VE + +++ + P P + S
Sbjct: 177 ILDCGKGPGIGALASYSVFP-TPNSVSIVEENPFLKKIIYDIHHNIYPSTSP---NPTSP 232
Query: 92 QALNKDISKSEREHDLVIASYVLGEVPSLQDRITIVRQLWDLTRD---VLVLVEPGTPQG 148
LN+ + + LVIAS L E+ S ++ +R LW L + +LVL E GT +G
Sbjct: 233 VTLNRLPLGKKDSYTLVIASNKLLEMKSEKELFDYLRSLWSLVSNDGGLLVLCERGTKRG 292
Query: 149 SSIISQMRSHILWMEKRKSRKYEARKSKDTNKETSKDLVTLRSGVHIVAPCPHEGRCP-- 206
S+I + R+ +L +KSK+T+ + + HIVAPCPH+GRCP
Sbjct: 293 FSLIQRARTFLL------------QKSKNTSDK--------QFNAHIVAPCPHDGRCPID 332
Query: 207 LENS--GKYCHFVQRLQRTTSQRAY 229
+EN C F Q + R Y
Sbjct: 333 IENGVRANICSFKQHFFLSPFSRLY 357
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Cox11-2 exerts its effect at some terminal stage of cytochrome c oxidase synthesis, probably by being involved in the insertion of the copper B into subunit I. Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|Q9UTM2|CO111_SCHPO Rsm22-cox11 tandem protein 1, mitochondrial OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=cox1101 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 69.3 bits (168), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 62/205 (30%), Positives = 95/205 (46%), Gaps = 33/205 (16%)
Query: 34 VLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQG--PKDLPLIHSYNSI 91
+LD G G G A V+P + V++VE + +++ + P P + S
Sbjct: 177 ILDCGKGPGIGALASYSVFP-TPNSVSIVEENPFLKKIIYDIHHNIYPSTSP---NPTSP 232
Query: 92 QALNKDISKSEREHDLVIASYVLGEVPSLQDRITIVRQLWDLTRD---VLVLVEPGTPQG 148
LN+ + + LVIAS L E+ S ++ +R LW L + +LVL E GT +G
Sbjct: 233 VTLNRLPLGKKDSYTLVIASNKLLEMKSEKELFDYLRSLWSLVSNDGGLLVLCERGTKRG 292
Query: 149 SSIISQMRSHILWMEKRKSRKYEARKSKDTNKETSKDLVTLRSGVHIVAPCPHEGRCP-- 206
S+I + R+ +L +KSK+T+ + + HIVAPCPH+GRCP
Sbjct: 293 FSLIQRARTFLL------------QKSKNTSDK--------QFNAHIVAPCPHDGRCPID 332
Query: 207 LENS--GKYCHFVQRLQRTTSQRAY 229
+EN C F Q + R Y
Sbjct: 333 IENGVRANICSFKQHFFLSPFSRLY 357
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Cox11-1 exerts its effect at some terminal stage of cytochrome c oxidase synthesis, probably by being involved in the insertion of the copper B into subunit I. Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|P36056|RT22_YEAST 37S ribosomal protein S22, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RSM22 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 64.3 bits (155), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 83/319 (26%), Positives = 136/319 (42%), Gaps = 59/319 (18%)
Query: 101 SEREHDLVIASYVL---GEVPSLQDRITIVRQLWDLT-RDVLVLVEPGTPQGSSIISQMR 156
+ +E+DL+I ++ L G +Q I L L +V++E G P G II++ R
Sbjct: 265 ASKEYDLIILTHQLLHDGNQFPIQVDENIEHYLNILAPGGHIVIIERGNPMGFEIIARAR 324
Query: 157 SHILWMEKRK----------SRKYEARKSKDTNKETSKDLVTLRSG--VHIVAPCPHEGR 204
L E SR R KD +L + S + ++APCPH+ +
Sbjct: 325 QITLRPENFPDEFGKIPRPWSRGVTVRGKKDA------ELGNISSNYFLKVIAPCPHQRK 378
Query: 205 CPLE--NSGKYCHFVQR-LQRTTSQRAYKRSKSEPLRGFEDEKFSFVAFRRGERPRERWP 261
CPL+ N Y H + L+ Q++ KR KFS + ++G+ W
Sbjct: 379 CPLQVGNPNFYTHKEGKDLKFCNFQKSIKRP-----------KFS-IELKKGKLLATSW- 425
Query: 262 LDGMKFDTLK-EQHAKRNPEDLEI-DYEDLLRLQAEAEVEPCKKEDLVNYESDEVQDDTV 319
DG + + + + +RN D EI +Y L+ E K++ E +++++ V
Sbjct: 426 -DGSQGNASRLKGTGRRNGRDYEILNYSYLI-------FERSHKDENTLKEIKKLRNENV 477
Query: 320 DSDKDQEKGEEETIPADLGGGWGRIIFSPVRRGRQVAMDVCRSIKRDGSEGSFQHLVFTR 379
+ D ++ D W RII PV+R V MD+C G + +R
Sbjct: 478 NGKYDI-----GSLGDDTQNSWPRIINDPVKRKGHVMMDLC------APSGELEKWTVSR 526
Query: 380 SKNPTLHRLAKKSLWGDLW 398
S + ++ A+KS GDLW
Sbjct: 527 SFSKQIYHDARKSKKGDLW 545
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Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 400 | ||||||
| 255555683 | 501 | cytochrome C oxidase assembly protein co | 0.927 | 0.740 | 0.748 | 1e-163 | |
| 225426218 | 585 | PREDICTED: methyltransferase-like protei | 0.922 | 0.630 | 0.733 | 1e-161 | |
| 449501769 | 508 | PREDICTED: methyltransferase-like protei | 0.942 | 0.742 | 0.719 | 1e-157 | |
| 449452208 | 508 | PREDICTED: methyltransferase-like protei | 0.942 | 0.742 | 0.719 | 1e-157 | |
| 356546324 | 527 | PREDICTED: methyltransferase-like protei | 0.94 | 0.713 | 0.688 | 1e-156 | |
| 357515371 | 536 | RSM22-like protein [Medicago truncatula] | 0.932 | 0.695 | 0.710 | 1e-154 | |
| 242035311 | 518 | hypothetical protein SORBIDRAFT_01g03129 | 0.932 | 0.720 | 0.664 | 1e-145 | |
| 357140856 | 525 | PREDICTED: uncharacterized protein LOC10 | 0.93 | 0.708 | 0.661 | 1e-144 | |
| 414867408 | 517 | TPA: hypothetical protein ZEAMMB73_55124 | 0.93 | 0.719 | 0.662 | 1e-143 | |
| 326504764 | 524 | predicted protein [Hordeum vulgare subsp | 0.925 | 0.706 | 0.658 | 1e-142 |
| >gi|255555683|ref|XP_002518877.1| cytochrome C oxidase assembly protein cox11, putative [Ricinus communis] gi|223541864|gb|EEF43410.1| cytochrome C oxidase assembly protein cox11, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 581 bits (1498), Expect = e-163, Method: Compositional matrix adjust.
Identities = 283/378 (74%), Positives = 323/378 (85%), Gaps = 7/378 (1%)
Query: 24 RRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLP 83
RRLPGFSP KVLDFGAGTGSAFWA+R+VWP+S+EKVNLVEPS SMQRAG+SL+Q KDLP
Sbjct: 130 RRLPGFSPTKVLDFGAGTGSAFWAMRQVWPKSVEKVNLVEPSPSMQRAGRSLIQDLKDLP 189
Query: 84 LIHSYNSIQALNKDISKSEREHDLVIASYVLGEVPSLQDRITIVRQLWDLTRDVLVLVEP 143
LIH YNSIQAL+K ISKSEREHDLVIASYVLGE+PSL+DRITIVRQLWDLT DVLVLVEP
Sbjct: 190 LIHGYNSIQALSKTISKSEREHDLVIASYVLGEIPSLKDRITIVRQLWDLTGDVLVLVEP 249
Query: 144 GTPQGSSIISQMRSHILWMEKRKSRKYEARKSKDTNKETSKDLVTLRSGVHIVAPCPHEG 203
GTP GS+IISQMRSHILWMEKRK RKSK N E K+LV+++SG +VAPC H+G
Sbjct: 250 GTPHGSNIISQMRSHILWMEKRKH-----RKSKAQNNEACKELVSIKSGAFVVAPCAHDG 304
Query: 204 RCPLENSGKYCHFVQRLQRTTSQRAYKRSKSEPLRGFEDEKFSFVAFRRGERPRERWPLD 263
CPLE SGKYCHF QRLQRT+SQRAYKRSK EPLRGFEDEKFSFVAFRRG+RPR WPLD
Sbjct: 305 YCPLEKSGKYCHFAQRLQRTSSQRAYKRSKGEPLRGFEDEKFSFVAFRRGQRPRASWPLD 364
Query: 264 GMKFDTLKEQHAKRNPEDLEIDYEDLLRLQAEAEVEPCKKEDLVNYESDEVQDDTVD-SD 322
GMKF+TLKEQ A+R EDLEIDYED+ Q EA V P ++ D ++Y+SD ++ D VD +D
Sbjct: 365 GMKFETLKEQRAERKLEDLEIDYEDVDE-QDEAGVVPYEEMDPLDYDSDAIETDGVDNND 423
Query: 323 KDQEKGEEETIPADLGGGWGRIIFSPVRRGRQVAMDVCRSIKRDGSEGSFQHLVFTRSKN 382
D+++ ++ET ADLGGGWGRIIFSPVRRGRQV++DVCRS+ RD SEGSF+ +V TRSKN
Sbjct: 424 GDEKEEQDETGHADLGGGWGRIIFSPVRRGRQVSLDVCRSVNRDSSEGSFERIVVTRSKN 483
Query: 383 PTLHRLAKKSLWGDLWPF 400
P LH AK+SLWGDLWPF
Sbjct: 484 PALHHQAKRSLWGDLWPF 501
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Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225426218|ref|XP_002263667.1| PREDICTED: methyltransferase-like protein 17, mitochondrial [Vitis vinifera] gi|297742403|emb|CBI34552.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 573 bits (1476), Expect = e-161, Method: Compositional matrix adjust.
Identities = 281/383 (73%), Positives = 328/383 (85%), Gaps = 14/383 (3%)
Query: 24 RRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLP 83
RRLPGFSPA VLDFG+GTGSA WALREVWPR+LE++NLVEPS+SMQR QSL+Q K+LP
Sbjct: 211 RRLPGFSPAGVLDFGSGTGSALWALREVWPRTLERINLVEPSKSMQRVSQSLIQDQKNLP 270
Query: 84 LIHSYNSIQALNKDISKSEREHDLVIASYVLGEVPSLQDRITIVRQLWDLTRDVLVLVEP 143
LIHSY+SIQAL ++ISKSEREHDLVIASYVLGE+PSL+DRITIVRQLWDLTRDVLVLVEP
Sbjct: 271 LIHSYDSIQALTQNISKSEREHDLVIASYVLGEIPSLKDRITIVRQLWDLTRDVLVLVEP 330
Query: 144 GTPQGSSIISQMRSHILWMEKRKSRKYEARKSKDTNKETSKDLVTLRSGVHIVAPCPHEG 203
GTPQGS+IISQMRSHILWMEKR+SRK E D + E SKD + L+ G +IVAPCPH+G
Sbjct: 331 GTPQGSNIISQMRSHILWMEKRRSRKNE-----DASDEVSKDKMALKGGAYIVAPCPHDG 385
Query: 204 RCPLENSGKYCHFVQRLQRTTSQRAYKRSKSEPLRGFEDEKFSFVAFRRGERPRERWPLD 263
CPLE +GKYCHFVQRLQRTTSQRAYKRSK EPLRGFEDEKF FVAF+RG+RPRE WPLD
Sbjct: 386 PCPLEKTGKYCHFVQRLQRTTSQRAYKRSKGEPLRGFEDEKFCFVAFKRGQRPREPWPLD 445
Query: 264 GMKFDTLKEQHAKRNPEDLEIDYEDLLRLQAEAEVEPCKKEDLVNYESDEVQDDTV---- 319
GMKFDTLKEQHAKRNPEDLEID+ED +L+ E + +ED V+Y+SD ++ +
Sbjct: 446 GMKFDTLKEQHAKRNPEDLEIDFEDQFQLEDE---DIPYQEDPVSYDSDVIETAAIDDDN 502
Query: 320 --DSDKDQEKGEEETIPADLGGGWGRIIFSPVRRGRQVAMDVCRSIKRDGSEGSFQHLVF 377
+ ++++E+G+EET ADLG GWGRIIF+PVRRG+QVAMDVCR+ R+GSEGSF +V
Sbjct: 503 EEEEEEEEEEGDEETTNADLGSGWGRIIFTPVRRGKQVAMDVCRATNREGSEGSFDRVVI 562
Query: 378 TRSKNPTLHRLAKKSLWGDLWPF 400
T+SKNPTLHR A++SLWGDLWPF
Sbjct: 563 TQSKNPTLHRQARRSLWGDLWPF 585
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449501769|ref|XP_004161453.1| PREDICTED: methyltransferase-like protein 17, mitochondrial-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 561 bits (1445), Expect = e-157, Method: Compositional matrix adjust.
Identities = 277/385 (71%), Positives = 328/385 (85%), Gaps = 8/385 (2%)
Query: 18 VTESFARRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQ 77
V RRLP FSP VLDFGAGTGS FWALREVWP S++KVN+VEPSQSMQRAGQSL+Q
Sbjct: 130 VLNEVRRRLPDFSPTSVLDFGAGTGSGFWALREVWPHSIQKVNIVEPSQSMQRAGQSLIQ 189
Query: 78 GPKDLPLIHSYNSIQALNKDISKSEREHDLVIASYVLGEVPSLQDRITIVRQLWDLTRDV 137
G K+LPLIH Y+SIQ+LNKDISKSEREHDLVIASYVLGE+PSLQDR+TIVRQLW+LT+DV
Sbjct: 190 GLKNLPLIHGYDSIQSLNKDISKSEREHDLVIASYVLGEIPSLQDRVTIVRQLWNLTKDV 249
Query: 138 LVLVEPGTPQGSSIISQMRSHILWMEKRKSRKYEARKSKDTNKETSKDLVTLRSGVHIVA 197
LVLVEPGTPQGS+IISQMRSHILWMEKRK +K E +K+ SKDLVT G ++VA
Sbjct: 250 LVLVEPGTPQGSNIISQMRSHILWMEKRKWKKNENKKNI-----ASKDLVTQTCGAYVVA 304
Query: 198 PCPHEGRCPLENSGKYCHFVQRLQRTTSQRAYKRSKSEPLRGFEDEKFSFVAFRRGERPR 257
PCPH+G+CPLE SGKYCHFVQRL+RTT+QR YKRSK E LRGFEDEKFSFVAFRRG+RPR
Sbjct: 305 PCPHDGKCPLEKSGKYCHFVQRLERTTTQRIYKRSKGESLRGFEDEKFSFVAFRRGQRPR 364
Query: 258 ERWPLDGMKFDTLKEQHAKRNPEDLEIDYEDLLRLQAEAEVEPCKKEDLVNYESDEVQDD 317
+ WPLDGM+F+TLKEQHAKRNPEDLEIDYEDLL+++ + +V P ++ D V+Y+SD ++ +
Sbjct: 365 DPWPLDGMRFETLKEQHAKRNPEDLEIDYEDLLKMENQVQVVPYQEVDPVSYDSDVMETE 424
Query: 318 TVDSDKDQEKGEEETIP--ADLGGGWGRIIFSPVRRGRQVAMDVCRSIKRDGSEGSFQHL 375
+D D ++E+GEE+ P ADLGGGWGRI+FSP RRG + M++CRS KRD SEGSF +
Sbjct: 425 VLD-DGEEEEGEEQGEPALADLGGGWGRIVFSPRRRGNHITMNICRSTKRDASEGSFDQV 483
Query: 376 VFTRSKNPTLHRLAKKSLWGDLWPF 400
V T+S+NPTLH A+KS+WGDLWPF
Sbjct: 484 VVTQSQNPTLHHQARKSIWGDLWPF 508
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449452208|ref|XP_004143852.1| PREDICTED: methyltransferase-like protein 17, mitochondrial-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 561 bits (1445), Expect = e-157, Method: Compositional matrix adjust.
Identities = 277/385 (71%), Positives = 328/385 (85%), Gaps = 8/385 (2%)
Query: 18 VTESFARRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQ 77
V RRLP FSP VLDFGAGTGS FWALREVWP S++KVN+VEPSQSMQRAGQSL+Q
Sbjct: 130 VLNEVRRRLPDFSPTSVLDFGAGTGSGFWALREVWPHSIQKVNIVEPSQSMQRAGQSLIQ 189
Query: 78 GPKDLPLIHSYNSIQALNKDISKSEREHDLVIASYVLGEVPSLQDRITIVRQLWDLTRDV 137
G K+LPLIH Y+SIQ+LNKDISKSEREHDLVIASYVLGE+PSLQDR+TIVRQLW+LT+DV
Sbjct: 190 GLKNLPLIHGYDSIQSLNKDISKSEREHDLVIASYVLGEIPSLQDRVTIVRQLWNLTKDV 249
Query: 138 LVLVEPGTPQGSSIISQMRSHILWMEKRKSRKYEARKSKDTNKETSKDLVTLRSGVHIVA 197
LVLVEPGTPQGS+IISQMRSHILWMEKRK +K E +K+ SKDLVT G ++VA
Sbjct: 250 LVLVEPGTPQGSNIISQMRSHILWMEKRKWKKNENKKNI-----ASKDLVTQTCGAYVVA 304
Query: 198 PCPHEGRCPLENSGKYCHFVQRLQRTTSQRAYKRSKSEPLRGFEDEKFSFVAFRRGERPR 257
PCPH+G+CPLE SGKYCHFVQRL+RTT+QR YKRSK E LRGFEDEKFSFVAFRRG+RPR
Sbjct: 305 PCPHDGKCPLEKSGKYCHFVQRLERTTTQRIYKRSKGESLRGFEDEKFSFVAFRRGQRPR 364
Query: 258 ERWPLDGMKFDTLKEQHAKRNPEDLEIDYEDLLRLQAEAEVEPCKKEDLVNYESDEVQDD 317
+ WPLDGM+F+TLKEQHAKRNPEDLEIDYEDLL+++ + +V P ++ D V+Y+SD ++ +
Sbjct: 365 DPWPLDGMRFETLKEQHAKRNPEDLEIDYEDLLKMENQVQVVPYQEVDPVSYDSDVMETE 424
Query: 318 TVDSDKDQEKGEEETIP--ADLGGGWGRIIFSPVRRGRQVAMDVCRSIKRDGSEGSFQHL 375
+D D ++E+GEE+ P ADLGGGWGRI+FSP RRG + M++CRS KRD SEGSF +
Sbjct: 425 VLD-DGEEEEGEEQGEPALADLGGGWGRIVFSPRRRGNHITMNICRSTKRDASEGSFDQV 483
Query: 376 VFTRSKNPTLHRLAKKSLWGDLWPF 400
V T+S+NPTLH A+KS+WGDLWPF
Sbjct: 484 VVTQSQNPTLHHQARKSIWGDLWPF 508
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356546324|ref|XP_003541577.1| PREDICTED: methyltransferase-like protein 17, mitochondrial-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 556 bits (1433), Expect = e-156, Method: Compositional matrix adjust.
Identities = 279/405 (68%), Positives = 329/405 (81%), Gaps = 29/405 (7%)
Query: 18 VTESFARRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQ 77
V + RRLPGFSP+KVLDFGAGTGSAFWAL+EVWP+SLEKVNL+EPSQSMQRAG+SLMQ
Sbjct: 128 VLKEVRRRLPGFSPSKVLDFGAGTGSAFWALQEVWPKSLEKVNLIEPSQSMQRAGRSLMQ 187
Query: 78 GPKDLPLIHSYNSIQALNKDISKSEREHDLVIASYVLGEVPSLQDRITIVRQLWDLTRDV 137
G K+LPLIHSY+SIQ+L+K I+KSEREHDLVIASYVLGE+PS++DRITIVRQLWDLTRD+
Sbjct: 188 GLKNLPLIHSYDSIQSLSKSITKSEREHDLVIASYVLGEIPSIKDRITIVRQLWDLTRDI 247
Query: 138 LVLVEPGTPQGSSIISQMRSHILWMEKRKSRKYEARKSKDTNKETSKDLVTLRSGVHIVA 197
LVLVEPGTP GS+II+QMRSHILWME+RK RKS N E KDL+T ++G +VA
Sbjct: 248 LVLVEPGTPHGSNIIAQMRSHILWMEERK-----YRKSSRKNNEVCKDLITEKAGAFVVA 302
Query: 198 PCPHEGRCPLENSGKYCHFVQRLQRTTSQRAYKRSKSEPLRGFEDEKFSFVAFRRGERPR 257
PCPH+G CPL SGKYCHFVQRL+RT+SQRAYKRSK +PLRGFEDEKFS+V FRRG RPR
Sbjct: 303 PCPHDGACPLVKSGKYCHFVQRLERTSSQRAYKRSKGDPLRGFEDEKFSYVVFRRGSRPR 362
Query: 258 ER--WPLDGMKFDTLKEQHAKRNPEDLEIDYEDLLRLQ---------AEAEVE------- 299
+ WPLDGM+F+TLKEQHAKRNPEDLEIDYED L+LQ A+AE +
Sbjct: 363 QVDPWPLDGMEFETLKEQHAKRNPEDLEIDYEDWLKLQQSDDTPHEVADAETDIADDLET 422
Query: 300 ---PCKKEDLVNYESDEV--QDDTVDSDKDQEKGEEETIPADLGGGWGRIIFSPVRRGRQ 354
P + + V Y+SD+ D +DS++D+E+ EE ADLGGGWGRI+F PVRRGRQ
Sbjct: 423 DDAPREVVNAVTYDSDDAVETDGPIDSEEDEEREEERG-SADLGGGWGRIVFMPVRRGRQ 481
Query: 355 VAMDVCRSIKRDGSEGSFQHLVFTRSKNPTLHRLAKKSLWGDLWP 399
V M+VCRS KRD SEGS+ +V TR+KNPTLH+ AK+S+WGDLWP
Sbjct: 482 VTMNVCRSTKRDASEGSYDRIVVTRTKNPTLHQQAKRSIWGDLWP 526
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357515371|ref|XP_003627974.1| RSM22-like protein [Medicago truncatula] gi|355521996|gb|AET02450.1| RSM22-like protein [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 552 bits (1423), Expect = e-154, Method: Compositional matrix adjust.
Identities = 270/380 (71%), Positives = 314/380 (82%), Gaps = 7/380 (1%)
Query: 18 VTESFARRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQ 77
V + +RRLPGFSP KVLDFGAGTGSAFWAL+EVWP+SLEKVN++EPSQSMQRAGQ L+Q
Sbjct: 131 VLKEVSRRLPGFSPTKVLDFGAGTGSAFWALQEVWPKSLEKVNIIEPSQSMQRAGQRLIQ 190
Query: 78 GPKDLPLIHSYNSIQALNKDISKSEREHDLVIASYVLGEVPSLQDRITIVRQLWDLTRDV 137
G KDLPLIHSY+SIQAL+KDISKSER HDLVIASYVLGE+PS++DRITI+RQLWD T+DV
Sbjct: 191 GLKDLPLIHSYDSIQALSKDISKSERGHDLVIASYVLGEIPSIKDRITILRQLWDQTQDV 250
Query: 138 LVLVEPGTPQGSSIISQMRSHILWMEKRKSRKYEARKSKDTNKETSKDLVTLRSGVHIVA 197
LVLVEPGTP GSSII+QMRS+ILWME+RK RKS N E KDL+T ++G +VA
Sbjct: 251 LVLVEPGTPHGSSIIAQMRSYILWMEERKH-----RKSSKKNNEVCKDLITEKAGAFVVA 305
Query: 198 PCPHEGRCPLENSGKYCHFVQRLQRTTSQRAYKRSKSEPLRGFEDEKFSFVAFRRGERPR 257
PCPH+G CPL SGKYCHFVQRL+RT+SQRAYKRSK EPLRGFEDEKFS+V FRRG RPR
Sbjct: 306 PCPHDGTCPLVKSGKYCHFVQRLERTSSQRAYKRSKGEPLRGFEDEKFSYVVFRRGPRPR 365
Query: 258 ERWPLDGMKFDTLKEQHAKRNPEDLEIDYEDLLRLQAEAEVEPCKKEDLVNYESD--EVQ 315
E WPLDG+ FDTLKEQ AKRNPEDLEIDYED L+LQ + P + + + YESD E
Sbjct: 366 EPWPLDGITFDTLKEQQAKRNPEDLEIDYEDWLKLQEADDDAPREVDAIRRYESDGLETD 425
Query: 316 DDTVDSDKDQEKGEEETIPADLGGGWGRIIFSPVRRGRQVAMDVCRSIKRDGSEGSFQHL 375
D D +++ ++ EEET ADLGGGWGRI+F P+RRG+QV M+VCRSIKRD SEG F +
Sbjct: 426 GDGEDDNEEVKETEEETEIADLGGGWGRIVFMPIRRGKQVTMNVCRSIKRDASEGEFARM 485
Query: 376 VFTRSKNPTLHRLAKKSLWG 395
V T+SKNP LHR AK+S+W
Sbjct: 486 VVTKSKNPALHRQAKRSIWA 505
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|242035311|ref|XP_002465050.1| hypothetical protein SORBIDRAFT_01g031290 [Sorghum bicolor] gi|241918904|gb|EER92048.1| hypothetical protein SORBIDRAFT_01g031290 [Sorghum bicolor] | Back alignment and taxonomy information |
|---|
Score = 521 bits (1341), Expect = e-145, Method: Compositional matrix adjust.
Identities = 250/376 (66%), Positives = 299/376 (79%), Gaps = 3/376 (0%)
Query: 27 PGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIH 86
P F+PAKVLDFGAG SA WA+R VWP+S+E+VNLVEPS+ MQRAGQSL+ K LPLIH
Sbjct: 144 PDFAPAKVLDFGAGPSSALWAMRAVWPKSIERVNLVEPSKEMQRAGQSLLDNLKGLPLIH 203
Query: 87 SYNSIQALNKDISKSEREHDLVIASYVLGEVPSLQDRITIVRQLWDLTRDVLVLVEPGTP 146
SY+SIQ LN+ I K ER HDLV++SY LGE+PSL DRITIVRQLWDLT DVLVL+EPGTP
Sbjct: 204 SYDSIQELNRKIEKHERGHDLVVSSYALGEIPSLSDRITIVRQLWDLTSDVLVLLEPGTP 263
Query: 147 QGSSIISQMRSHILWMEKRKSRKYEARKSK--DTNKETSKDLVTLRSGVHIVAPCPHEGR 204
QG+ IISQMRS+ILWMEKRK RK E S+ + K +L++G +VAPCPH+GR
Sbjct: 264 QGAKIISQMRSYILWMEKRKCRKIEKSSSRPPSSMKSIVAQEASLKNGSFVVAPCPHDGR 323
Query: 205 CPLENSGKYCHFVQRLQRTTSQRAYKRSKSEPLRGFEDEKFSFVAFRRGERPRERWPLDG 264
CPLENS KYCHFVQRL+RT+SQRAYKRSK PLRGFEDEKF +VA RRG+RP E WPLDG
Sbjct: 324 CPLENSDKYCHFVQRLERTSSQRAYKRSKGVPLRGFEDEKFCYVALRRGKRPEEAWPLDG 383
Query: 265 MKFDTLKEQHAKRNPEDLEIDYEDLLRLQAEAEVEPCKKEDLVNYESDEVQDDTVDSDKD 324
+ F+TLKE+HAKR PE+L IDY+D + + EV + LV Y SDE + ++ D +
Sbjct: 384 LNFETLKERHAKRKPEELIIDYDDQFPSEEDEEVPVDGGDSLVPYASDE-HELSLFHDSE 442
Query: 325 QEKGEEETIPADLGGGWGRIIFSPVRRGRQVAMDVCRSIKRDGSEGSFQHLVFTRSKNPT 384
+ + E++TI ADLGGGWGRII+SP+RRGRQV MDVCRS KRD SEG+F+ +V TRSKNPT
Sbjct: 443 EAEEEDQTIRADLGGGWGRIIYSPIRRGRQVQMDVCRSTKRDASEGAFERVVLTRSKNPT 502
Query: 385 LHRLAKKSLWGDLWPF 400
LH A++SLWGDLWPF
Sbjct: 503 LHFQARRSLWGDLWPF 518
|
Source: Sorghum bicolor Species: Sorghum bicolor Genus: Sorghum Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357140856|ref|XP_003571978.1| PREDICTED: uncharacterized protein LOC100843174, partial [Brachypodium distachyon] | Back alignment and taxonomy information |
|---|
Score = 518 bits (1334), Expect = e-144, Method: Compositional matrix adjust.
Identities = 252/381 (66%), Positives = 298/381 (78%), Gaps = 9/381 (2%)
Query: 24 RRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLP 83
RR P F+P KVLDFGAG SA WA+R VWP+S+E+VNLVEPS+ MQRAGQ+L+ K LP
Sbjct: 150 RRSPDFAPKKVLDFGAGPSSALWAMRAVWPKSIERVNLVEPSKEMQRAGQTLLDNLKGLP 209
Query: 84 LIHSYNSIQALNKDISKSEREHDLVIASYVLGEVPSLQDRITIVRQLWDLTRDVLVLVEP 143
LIHSY+SIQ LN+ I K ER HDLVI+SY LGE+PSL DRITIVRQLWDLT+DVLVL+EP
Sbjct: 210 LIHSYDSIQELNRTIEKHERGHDLVISSYALGEIPSLSDRITIVRQLWDLTKDVLVLLEP 269
Query: 144 GTPQGSSIISQMRSHILWMEKRKSRKYEARKSKDTNKETSKDLV----TLRSGVHIVAPC 199
GTPQGS IISQMRS+ILWMEKRK RK E KS +K++V L++G +VAPC
Sbjct: 270 GTPQGSKIISQMRSYILWMEKRKCRKSE--KSTGGAPSKTKNIVHQEALLKNGAFVVAPC 327
Query: 200 PHEGRCPLENSGKYCHFVQRLQRTTSQRAYKRSKSEPLRGFEDEKFSFVAFRRGERPRER 259
PH+GRCPLENS KYCHFVQRL+RT+SQR YKRSK PLRGFEDEKF +VA RRG+RP E
Sbjct: 328 PHDGRCPLENSDKYCHFVQRLERTSSQRIYKRSKGVPLRGFEDEKFCYVALRRGKRPEEA 387
Query: 260 WPLDGMKFDTLKEQHAKRNPEDLEIDYEDLLRLQAEAEVEPCKKEDLVNYESDEVQDDTV 319
WPLDGMKFDTLKE+HAKRNPEDL IDYE+ + + E ++ LV Y SD +
Sbjct: 388 WPLDGMKFDTLKERHAKRNPEDLIIDYEEQFPSEEDEETLAGHEDSLVPYTSDTQELSLF 447
Query: 320 DSDKDQEKGEEETIPADLGGGWGRIIFSPVRRGRQVAMDVCRSIKRDGSEGSFQHLVFTR 379
+++ E+E I ADLGGGWGRII+SP+RRGRQV MDVCR+ KRD SEG+F+ +V T+
Sbjct: 448 HESREE---EDEPIRADLGGGWGRIIYSPIRRGRQVQMDVCRATKRDASEGAFERVVVTQ 504
Query: 380 SKNPTLHRLAKKSLWGDLWPF 400
SKNP LH A++SLWGDLWPF
Sbjct: 505 SKNPALHLQARRSLWGDLWPF 525
|
Source: Brachypodium distachyon Species: Brachypodium distachyon Genus: Brachypodium Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|414867408|tpg|DAA45965.1| TPA: hypothetical protein ZEAMMB73_551244 [Zea mays] | Back alignment and taxonomy information |
|---|
Score = 513 bits (1320), Expect = e-143, Method: Compositional matrix adjust.
Identities = 249/376 (66%), Positives = 295/376 (78%), Gaps = 4/376 (1%)
Query: 27 PGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIH 86
P F+PAKVLDFGAG SA WA+R VWP+S+E+VNLVEPS+ MQRAGQSL+ K LPLIH
Sbjct: 144 PEFAPAKVLDFGAGPSSALWAMRAVWPKSIERVNLVEPSKEMQRAGQSLLDNLKGLPLIH 203
Query: 87 SYNSIQALNKDISKSEREHDLVIASYVLGEVPSLQDRITIVRQLWDLTRDVLVLVEPGTP 146
SY+SIQ LN+ I K ER HDLV++SY LGE+PSL DRITIVRQLWDLT DVLVL+EPGTP
Sbjct: 204 SYDSIQELNRKIEKHERGHDLVVSSYALGEIPSLSDRITIVRQLWDLTSDVLVLLEPGTP 263
Query: 147 QGSSIISQMRSHILWMEKRKSRKYEARKSK--DTNKETSKDLVTLRSGVHIVAPCPHEGR 204
QG+ IISQMRS+ILWMEKRK RK E S+ + K V+L++G +VAPCPH+GR
Sbjct: 264 QGAKIISQMRSYILWMEKRKCRKIEKSSSRPPSSMKSIVAQKVSLKNGSFVVAPCPHDGR 323
Query: 205 CPLENSGKYCHFVQRLQRTTSQRAYKRSKSEPLRGFEDEKFSFVAFRRGERPRERWPLDG 264
CPLENS KYCHFVQRL+RT+SQRA+KRSK PLRGFEDEKF +VA RRG+RP E WPLD
Sbjct: 324 CPLENSDKYCHFVQRLERTSSQRAFKRSKGVPLRGFEDEKFCYVALRRGKRPEEAWPLDD 383
Query: 265 MKFDTLKEQHAKRNPEDLEIDYEDLLRLQAEAEVEPCKKEDLVNYESDEVQDDTVDSDKD 324
+ F+TLKE++AKR PEDL IDY+D + + EV + LV Y SDE + ++
Sbjct: 384 LNFETLKERNAKRKPEDLVIDYDDQFPSEEDEEVHVDGGDSLVPYASDEHELSLFHDSEE 443
Query: 325 QEKGEEETIPADLGGGWGRIIFSPVRRGRQVAMDVCRSIKRDGSEGSFQHLVFTRSKNPT 384
E E+T+ ADLGGGWGRII+SP+RRGRQV MDVCRS KRD SEG+F+ +V TRSKNPT
Sbjct: 444 AEA--EQTVRADLGGGWGRIIYSPMRRGRQVQMDVCRSTKRDASEGTFERVVVTRSKNPT 501
Query: 385 LHRLAKKSLWGDLWPF 400
LH A+KSLWGDLWPF
Sbjct: 502 LHFQARKSLWGDLWPF 517
|
Source: Zea mays Species: Zea mays Genus: Zea Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|326504764|dbj|BAK06673.1| predicted protein [Hordeum vulgare subsp. vulgare] | Back alignment and taxonomy information |
|---|
Score = 511 bits (1315), Expect = e-142, Method: Compositional matrix adjust.
Identities = 253/384 (65%), Positives = 293/384 (76%), Gaps = 14/384 (3%)
Query: 24 RRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLP 83
RR P F+P VLDFGAG SA WA+R VWP+S+E+VNL+EPS+ MQRAGQ+L+ K LP
Sbjct: 148 RRSPDFAPKNVLDFGAGPSSALWAMRAVWPKSIERVNLIEPSKEMQRAGQTLLDNLKGLP 207
Query: 84 LIHSYNSIQALNKDISKSEREHDLVIASYVLGEVPSLQDRITIVRQLWDLTRDVLVLVEP 143
LIHSY+ IQ LN+ I K ER HDLVI+SY LGE+PSL DRITI RQLWDLT+DVLVL+EP
Sbjct: 208 LIHSYDGIQELNRSIEKHERRHDLVISSYALGEIPSLNDRITIARQLWDLTKDVLVLLEP 267
Query: 144 GTPQGSSIISQMRSHILWMEKRKSRKYEARKSKDTNKETSKDLVT----LRSGVHIVAPC 199
GTPQGS IISQMRS+ILWMEKRK RK E KS K +V L+ G +VAPC
Sbjct: 268 GTPQGSKIISQMRSYILWMEKRKCRKSE--KSTGAAPSKMKSIVAQEDLLKDGAFVVAPC 325
Query: 200 PHEGRCPLENSGKYCHFVQRLQRTTSQRAYKRSKSEPLRGFEDEKFSFVAFRRGERPRER 259
PH+G+CPLENS KYCHFVQRL+RT+SQR YKRSK PLRGFEDEKF +VA RRG+RP E
Sbjct: 326 PHDGQCPLENSDKYCHFVQRLERTSSQRIYKRSKGVPLRGFEDEKFCYVALRRGKRPEEA 385
Query: 260 WPLDGMKFDTLKEQHAKRNPEDLEIDYEDLLRLQAEAEVEPCKKEDLVNYESDEVQDDTV 319
WPLDGMKFDTLKE+HAKRNPEDL IDY+D + + E C ++ LV Y S DT
Sbjct: 386 WPLDGMKFDTLKERHAKRNPEDLIIDYDDQFPSEEDEEAPDCDEDSLVPYAS-----DTQ 440
Query: 320 DSDKDQEKGEEET---IPADLGGGWGRIIFSPVRRGRQVAMDVCRSIKRDGSEGSFQHLV 376
+ E GEEE I ADLGGGWGRII+SP+RRGRQV MDVCR+ KRD SEG+F+ +V
Sbjct: 441 ELSLFHESGEEEEEEPIRADLGGGWGRIIYSPIRRGRQVQMDVCRATKRDASEGAFERVV 500
Query: 377 FTRSKNPTLHRLAKKSLWGDLWPF 400
T+SKNP LH A+KSLWGDLWPF
Sbjct: 501 VTQSKNPALHLQARKSLWGDLWPF 524
|
Source: Hordeum vulgare subsp. vulgare Species: Hordeum vulgare Genus: Hordeum Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 400 | ||||||
| TAIR|locus:2019484 | 537 | AT1G64600 [Arabidopsis thalian | 0.927 | 0.690 | 0.664 | 3.1e-138 | |
| DICTYBASE|DDB_G0292286 | 1241 | DDB_G0292286 [Dictyostelium di | 0.467 | 0.150 | 0.347 | 1.6e-33 | |
| UNIPROTKB|I3L7P4 | 345 | METTL17 "Uncharacterized prote | 0.347 | 0.402 | 0.365 | 3.8e-25 | |
| MGI|MGI:1098577 | 461 | Mettl17 "methyltransferase lik | 0.347 | 0.301 | 0.365 | 3.4e-24 | |
| RGD|1559895 | 461 | Mettl17 "methyltransferase lik | 0.347 | 0.301 | 0.351 | 1.1e-22 | |
| UNIPROTKB|F1MEK1 | 462 | METTL17 "Methyltransferase-lik | 0.347 | 0.300 | 0.358 | 1.2e-22 | |
| UNIPROTKB|Q2TBP8 | 462 | METTL17 "Methyltransferase-lik | 0.347 | 0.300 | 0.358 | 1.2e-22 | |
| UNIPROTKB|F1PNZ8 | 308 | METTL17 "Uncharacterized prote | 0.352 | 0.457 | 0.321 | 2.1e-22 | |
| UNIPROTKB|Q9H7H0 | 456 | METTL17 "Methyltransferase-lik | 0.347 | 0.304 | 0.358 | 4.3e-22 | |
| ZFIN|ZDB-GENE-031118-203 | 464 | mettl17 "methyltransferase lik | 0.342 | 0.295 | 0.359 | 1.2e-17 |
| TAIR|locus:2019484 AT1G64600 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1353 (481.3 bits), Expect = 3.1e-138, P = 3.1e-138
Identities = 255/384 (66%), Positives = 311/384 (80%)
Query: 24 RRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLP 83
RR+PGF+P +VLDFGAGTGS FWA++EVWP+S+EKVN+VEPSQSMQRAG++L+QG KDLP
Sbjct: 129 RRVPGFTPTRVLDFGAGTGSGFWAVKEVWPKSVEKVNIVEPSQSMQRAGRNLIQGLKDLP 188
Query: 84 LIHSYNSIQALNKDISK-SEREHDLVIASYVLGEVPSLQDRITIVRQLWDLTRDVLVLVE 142
LIH Y S+ ALNK+I+K SER+HDLVIASYVLGE+PSL+DRIT+VRQLWDLT D+LVLVE
Sbjct: 189 LIHGYTSLLALNKEINKKSERKHDLVIASYVLGEIPSLKDRITVVRQLWDLTDDLLVLVE 248
Query: 143 PGTPQGSSIISQMRSHILWMEKRKSRKYEARKSKDTNKETSKDLVTLRSGVHIVAPCPHE 202
PGTP G++IISQMRSHILWMEKRK RK E + KD K+++ L+SG HIVAPCPH+
Sbjct: 249 PGTPHGANIISQMRSHILWMEKRKLRKLEKKMKKD-----GKEVLDLKSGAHIVAPCPHD 303
Query: 203 GRCPLENSGKYCHFVQRLQRTTSQRAYKRSKSEPLRGFEDEKFSFVAFRRGERPRERWPL 262
G+CPLEN+GKYCHFVQRLQRT+SQR+YKR+K PLRGFEDEKF FVAFRRG+RPRE WPL
Sbjct: 304 GKCPLENTGKYCHFVQRLQRTSSQRSYKRTKGVPLRGFEDEKFCFVAFRRGQRPRELWPL 363
Query: 263 DGMKFDTLKEQHAKRNPEDLEIDYEDLLRLQA-EAE-VEP-CKKEDLVNYESDEVQD--- 316
DGMK +TLKE+ A + PEDLEIDYED ++ Q E ++P D ++ +E +D
Sbjct: 364 DGMKLETLKERRANKKPEDLEIDYEDFIKSQVVEVPYIDPRAYDSDTMDENEEEQEDGGG 423
Query: 317 -DTVDSDKDQEKGEEETIPADLGGGWGRIIFSPVRRGRQVAMDVCRSIKRDGSEGSFQHL 375
D + DK +E+ EEE+ A +GGGWGRIIF P R+G+QV +D+C K DGSEG+F+
Sbjct: 424 TDEDEEDKIEEEIEEESERASVGGGWGRIIFPPFRKGKQVTLDMCVPTKEDGSEGAFERR 483
Query: 376 VFTRSKNPTLHRLAKKSLWGDLWP 399
V T+SKNP LH AKKS WGDLWP
Sbjct: 484 VITKSKNPDLHLQAKKSFWGDLWP 507
|
|
| DICTYBASE|DDB_G0292286 DDB_G0292286 [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
Score = 307 (113.1 bits), Expect = 1.6e-33, Sum P(2) = 1.6e-33
Identities = 73/210 (34%), Positives = 113/210 (53%)
Query: 25 RLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPL 84
RLP F P +LD+G+G G+ W+ +W S++++ VEPS M + L++G +
Sbjct: 650 RLPNFKPTSLLDYGSGPGTVLWSADTIWGDSIKRIRAVEPSTYMSDVAKKLLEGNTNRVK 709
Query: 85 IHSY-NSIQALNKDISKSERE-HDLVIASYVLGEVPSLQDRITIVRQLWDLTRD--VLVL 140
Y N+ +D + E +++V ASYVL E+PS + R +VR+LW + +LVL
Sbjct: 710 WSPYLNTANLKRQDGTIPSTELNEMVTASYVLSELPSQEARNDLVRELWSHVKPSGILVL 769
Query: 141 VEPGTPQGSSIISQMRSHILWMEKRKSRKYEARKSKDTNKETSKDLVTLRSGVHIVAPCP 200
+EPGTP G +II + R IL E Y++ K++ +VAPCP
Sbjct: 770 IEPGTPIGFNIIKEARQLILDEEPEILSIYKSTKAQ------------------VVAPCP 811
Query: 201 HEGRCPLENSGKYCHFVQRLQRTTSQRAYK 230
H G+CP+ S +CHF QR++R Q+ K
Sbjct: 812 HSGKCPM-GSLSWCHFSQRVERPVFQKLAK 840
|
|
| UNIPROTKB|I3L7P4 METTL17 "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 215 (80.7 bits), Expect = 3.8e-25, Sum P(3) = 3.8e-25
Identities = 53/145 (36%), Positives = 78/145 (53%)
Query: 25 RLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKD--L 82
R P F P ++DFG+GTGS WA W +SL + V+ S +M + L++G + L
Sbjct: 66 RFPEFQPQTLMDFGSGTGSVTWAAHSTWGQSLREYMCVDSSAAMLDLAEKLLKGGSESGL 125
Query: 83 PLIHSYNSIQALNKDISKSEREHDLVIASYVLGEVPSLQDRITIVRQLWDLTRDVLVLVE 142
P + Q L +S + D+V++++ L E+PS DR IV+ LW T L+LVE
Sbjct: 126 PYVPGVFFRQFL--PVSPKV-QFDVVVSAFSLSELPSKADRNDIVQTLWRKTSHFLILVE 182
Query: 143 PGTPQGSSIISQMRSHILWMEKRKS 167
GT G S++ R +L EK KS
Sbjct: 183 NGTKAGHSLLMDARDLVL-NEKEKS 206
|
|
| MGI|MGI:1098577 Mettl17 "methyltransferase like 17" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 219 (82.2 bits), Expect = 3.4e-24, Sum P(3) = 3.4e-24
Identities = 53/145 (36%), Positives = 79/145 (54%)
Query: 25 RLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDL-- 82
R+P F P ++DFG+GTGS WA W +SL + V+ S +M + L++G +
Sbjct: 181 RIPEFRPQTLMDFGSGTGSVAWAAHRTWGQSLREYVCVDSSAAMLGLAEKLLKGGSESGK 240
Query: 83 PLIHSYNSIQALNKDISKSEREHDLVIASYVLGEVPSLQDRITIVRQLWDLTRDVLVLVE 142
P I Q L +S + D+V+++Y L E+PS DRI +++ LW T LVLVE
Sbjct: 241 PCIPGVFFRQFL--PVSPKV-QFDVVVSAYALSELPSRADRIEVIQNLWRKTSHFLVLVE 297
Query: 143 PGTPQGSSIISQMRSHILWMEKRKS 167
GT G ++ R+ +L EK KS
Sbjct: 298 NGTKAGHRLLMDARNLVLG-EKEKS 321
|
|
| RGD|1559895 Mettl17 "methyltransferase like 17" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 205 (77.2 bits), Expect = 1.1e-22, Sum P(3) = 1.1e-22
Identities = 51/145 (35%), Positives = 78/145 (53%)
Query: 25 RLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDL-- 82
R+P F P ++DFG+GTGS WA W +SL + V+ S +M + L++G +
Sbjct: 181 RIPEFQPQTLMDFGSGTGSVAWAAHSTWGQSLREYVCVDRSAAMLGLAEKLLKGGSESGK 240
Query: 83 PLIHSYNSIQALNKDISKSEREHDLVIASYVLGEVPSLQDRITIVRQLWDLTRDVLVLVE 142
P I Q L +S + D+V++++ L E+PS DR +++ LW T LVLVE
Sbjct: 241 PCIPGVFFRQFL--PVSP-KATFDVVVSAFALSELPSRADRTEVLQNLWRKTSHFLVLVE 297
Query: 143 PGTPQGSSIISQMRSHILWMEKRKS 167
GT G ++ R+ IL +K KS
Sbjct: 298 NGTKAGHRLLMDARNLILG-DKEKS 321
|
|
| UNIPROTKB|F1MEK1 METTL17 "Methyltransferase-like protein 17, mitochondrial" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 212 (79.7 bits), Expect = 1.2e-22, Sum P(3) = 1.2e-22
Identities = 52/145 (35%), Positives = 77/145 (53%)
Query: 25 RLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKD--L 82
RLP F P ++DFG+GTGS WA W +SL + V+ S +M + L++G +
Sbjct: 181 RLPEFQPQTLMDFGSGTGSVTWAAHSTWGQSLREYMCVDSSAAMLELAEKLLKGGSGSGM 240
Query: 83 PLIHSYNSIQALNKDISKSEREHDLVIASYVLGEVPSLQDRITIVRQLWDLTRDVLVLVE 142
P + Q L +S + D+V+A++ L E+PS DR +V+ LW T LVL+E
Sbjct: 241 PCVPGVFFRQFL--PVSPKV-QFDVVVAAFSLSELPSKADRTDVVQTLWRKTGHFLVLIE 297
Query: 143 PGTPQGSSIISQMRSHILWMEKRKS 167
GT G S++ R +L K KS
Sbjct: 298 NGTKAGHSLLMDARDLVL-NGKEKS 321
|
|
| UNIPROTKB|Q2TBP8 METTL17 "Methyltransferase-like protein 17, mitochondrial" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 212 (79.7 bits), Expect = 1.2e-22, Sum P(3) = 1.2e-22
Identities = 52/145 (35%), Positives = 77/145 (53%)
Query: 25 RLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKD--L 82
RLP F P ++DFG+GTGS WA W +SL + V+ S +M + L++G +
Sbjct: 181 RLPEFQPQTLMDFGSGTGSVTWAAHSTWGQSLREYMCVDSSAAMLELAEKLLKGGSGSGM 240
Query: 83 PLIHSYNSIQALNKDISKSEREHDLVIASYVLGEVPSLQDRITIVRQLWDLTRDVLVLVE 142
P + Q L +S + D+V+A++ L E+PS DR +V+ LW T LVL+E
Sbjct: 241 PCVPGVFFRQFL--PVSPKV-QFDVVVAAFSLSELPSKADRTDVVQTLWRKTGHFLVLIE 297
Query: 143 PGTPQGSSIISQMRSHILWMEKRKS 167
GT G S++ R +L K KS
Sbjct: 298 NGTKAGHSLLMDARDLVL-NGKEKS 321
|
|
| UNIPROTKB|F1PNZ8 METTL17 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 189 (71.6 bits), Expect = 2.1e-22, Sum P(3) = 2.1e-22
Identities = 46/143 (32%), Positives = 71/143 (49%)
Query: 25 RLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPL 84
R+P F P ++DFG+GTGS WA W +SL + V+ S +M + L++G
Sbjct: 22 RVPKFQPQTLMDFGSGTGSVTWAAHSAWGQSLREYMCVDSSAAMLDLAEKLLRGGSASGE 81
Query: 85 IHSYNSIQALNKDISKSEREHDLVIASYVLGEVPSLQDRITIVRQLWDLTRDVLVLVEPG 144
H +S + D+V++++ L E+PS DR ++ LW T L+LVE G
Sbjct: 82 PHVPGVFFRQFLPVSPKV-QFDVVVSAFSLSELPSKADRTETIQTLWRKTGHFLILVENG 140
Query: 145 TPQGSSIISQMRSHILWMEKRKS 167
T G ++ R +L K KS
Sbjct: 141 TKAGHCLLMDARDLVL-KGKEKS 162
|
|
| UNIPROTKB|Q9H7H0 METTL17 "Methyltransferase-like protein 17, mitochondrial" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 205 (77.2 bits), Expect = 4.3e-22, Sum P(3) = 4.3e-22
Identities = 52/145 (35%), Positives = 77/145 (53%)
Query: 25 RLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDL-- 82
R P F P ++DFG+GTGS WA +W +SL + V+ S +M + L++G +
Sbjct: 180 RNPAFQPQTLMDFGSGTGSVTWAAHSIWGQSLREYMCVDRSAAMLVLAEKLLKGGSESGE 239
Query: 83 PLIHSYNSIQALNKDISKSEREHDLVIASYVLGEVPSLQDRITIVRQLWDLTRDVLVLVE 142
P I Q L +S + D+V++++ L E+PS DR +V+ LW T LVLVE
Sbjct: 240 PYIPGVFFRQFL--PVSPKV-QFDVVVSAFSLSELPSKADRTEVVQTLWRKTGHFLVLVE 296
Query: 143 PGTPQGSSIISQMRSHILWMEKRKS 167
GT G S++ R +L K KS
Sbjct: 297 NGTKAGHSLLMDARDLVL-KGKEKS 320
|
|
| ZFIN|ZDB-GENE-031118-203 mettl17 "methyltransferase like 17" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 198 (74.8 bits), Expect = 1.2e-17, Sum P(3) = 1.2e-17
Identities = 51/142 (35%), Positives = 77/142 (54%)
Query: 24 RRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQR-AGQSLMQGP-KD 81
+R P F P +LDFG+G G+ WA +W SL++ V+ S M A Q L++G ++
Sbjct: 182 KRDPLFVPYSLLDFGSGLGTGTWAAHRLWGDSLKEYVCVDSSGDMNTLAEQLLLEGSERN 241
Query: 82 LPLIHSYNSIQALNKDISKSEREHDLVIASYVLGEVPSLQDRITIVRQLWDLTRDVLVLV 141
P I Q L +S + DLV+A++ L E+ +L +R+ ++ LW T LVLV
Sbjct: 242 NPTIKQVYFRQFL--PVSPKV-QFDLVVAAFSLSELATLDERLNVISTLWRKTNSYLVLV 298
Query: 142 EPGTPQGSSIISQMRSHILWME 163
E GT +G I+ + R IL E
Sbjct: 299 ENGTKEGHQILMEARDAILKRE 320
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 2.1.1 | LOW CONFIDENCE prediction! |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 400 | |||
| pfam09243 | 275 | pfam09243, Rsm22, Mitochondrial small ribosomal su | 2e-36 | |
| COG5459 | 484 | COG5459, COG5459, Predicted rRNA methylase [Transl | 2e-30 | |
| pfam09243 | 275 | pfam09243, Rsm22, Mitochondrial small ribosomal su | 2e-07 | |
| pfam08242 | 98 | pfam08242, Methyltransf_12, Methyltransferase doma | 2e-04 | |
| pfam12847 | 104 | pfam12847, Methyltransf_18, Methyltransferase doma | 0.004 |
| >gnl|CDD|220152 pfam09243, Rsm22, Mitochondrial small ribosomal subunit Rsm22 | Back alignment and domain information |
|---|
Score = 133 bits (336), Expect = 2e-36
Identities = 76/238 (31%), Positives = 107/238 (44%), Gaps = 45/238 (18%)
Query: 21 SFARRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK 80
A R+P F+P LD GAG G+A WA E+WP LE +++ S++ G+ L +
Sbjct: 25 ELAERVPQFAPLSHLDVGAGPGTALWAASELWPG-LEPATVIDASEAALAIGEELA---R 80
Query: 81 DLPLIHSYNSIQALNKDISKSER---EHDLVIASYVLGEVPSLQDRITIVRQLWDLTRDV 137
+P + +D+ + DLV SYVL E+ R ++ LW
Sbjct: 81 HIPALKH----AWRARDVIGAALDFEPADLVTISYVLDELTP-ASREKVIDNLWAKAAQA 135
Query: 138 LVLVEPGTPQGSSIISQMRSHILWMEKRKSRKYEARKSKDTNKETSKDLVTLRSGVHIVA 197
LV+VEPGTP G + +E R+ G HI A
Sbjct: 136 LVIVEPGTPAGWRRV---------LEARERLIAA--------------------GFHIAA 166
Query: 198 PCPHEGRCPLENSGKYCHFVQRLQRTTSQRAYKRSKSEPLRGFEDEKFSFVAFRRGER 255
PCPHE CPL G +CHF QR+ R++ R + S P +EDEKFS++A R
Sbjct: 167 PCPHELACPLVAPGDWCHFSQRVARSSLHR-LAKDASVP---WEDEKFSYLAAERQPV 220
|
Rsm22 has been identified as a mitochondrial small ribosomal subunit and is a methyltransferase. In Schizosaccharomyces pombe, Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria. Length = 275 |
| >gnl|CDD|227746 COG5459, COG5459, Predicted rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 121 bits (304), Expect = 2e-30
Identities = 90/389 (23%), Positives = 149/389 (38%), Gaps = 94/389 (24%)
Query: 18 VTESFARRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQ 77
+ +R+P F+P +LD GAG G+ WAL ++WP L+ ++E S ++++ G +L +
Sbjct: 101 SLDELQKRVPDFAPQSILDVGAGPGTGLWALNDIWP-DLKSAVILEASPALRKVGDTLAE 159
Query: 78 GPKDLPLIHSYNSIQALNKDISKSEREHDLVIASYVLGEVPSLQDRITIVRQLWDLTR-- 135
+ + + ++ + L I L + + + +LW+L
Sbjct: 160 NVSTEKTDWRASDVTEDRLSLPAAD-LYTLAIVLDELLPDGNEKPIQVNIERLWNLLAPG 218
Query: 136 DVLVLVEPGTPQGSSIISQMRSHILWMEKRKSRKYEARKSKDTNKETSKDLVTLRSGVHI 195
LV+VE GTP G I + R +L HI
Sbjct: 219 GHLVIVERGTPAGFERILRARQILLAPGNFPDEF--------------------NYFAHI 258
Query: 196 VAPCPHEGRCPLE----NSGKYCHFVQRLQRTTSQRAYKRSKSEPLRGFEDEKFSFVAFR 251
+APCPH+ +CPL+ +CHF QR+ RSK F
Sbjct: 259 IAPCPHQRKCPLQVPNGKDLDWCHFSQRV---------ARSK----------------FS 293
Query: 252 RGERPR-ERWPLDGMKFDTLKEQHAKRNPEDLEIDYEDLLRLQAEAEVEPCKKEDLVNYE 310
+ R R DG + + + + +R EI +E
Sbjct: 294 IELKKRLHRTSKDGSQGNASRLK--RRAGRPWEILFER---------------------- 329
Query: 311 SDEVQDDTVDSDKDQEKGEEETIPADLGGGWGRIIFSPVRRGRQVAMDVCRSIKRDGSEG 370
S KD++ +E + W RII PV+R V +D+C +G
Sbjct: 330 ----------SHKDEKFLKEAAVRRPTANSWPRIIAPPVKRKGHVMIDLCAP------DG 373
Query: 371 SFQHLVFTRSKNPTLHRLAKKSLWGDLWP 399
+ + T+S ++RLA+KS WGDL+
Sbjct: 374 ELEEWLVTKSDGKQIYRLARKSDWGDLFA 402
|
Length = 484 |
| >gnl|CDD|220152 pfam09243, Rsm22, Mitochondrial small ribosomal subunit Rsm22 | Back alignment and domain information |
|---|
Score = 51.7 bits (124), Expect = 2e-07
Identities = 17/59 (28%), Positives = 30/59 (50%), Gaps = 7/59 (11%)
Query: 341 WGRIIFSPVRRGRQVAMDVCRSIKRDGSEGSFQHLVFTRSKNPTLHRLAKKSLWGDLWP 399
R++ P R V +D+C +G+ Q L+ T+ L++ A+++ WGD WP
Sbjct: 224 APRVVRPPQVRSGHVLIDLC------SEDGTLQELLVTKRHGY-LYKAARRADWGDRWP 275
|
Rsm22 has been identified as a mitochondrial small ribosomal subunit and is a methyltransferase. In Schizosaccharomyces pombe, Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria. Length = 275 |
| >gnl|CDD|219760 pfam08242, Methyltransf_12, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 39.7 bits (93), Expect = 2e-04
Identities = 24/103 (23%), Positives = 38/103 (36%), Gaps = 10/103 (9%)
Query: 35 LDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQAL 94
LD G GTG+ AL E P + V+ S + A + ++
Sbjct: 1 LDIGCGTGTLLRALLEALPGL--EYTGVDISPAALEAAAERLAALGL----LDAVRVRLD 54
Query: 95 NKDISKSEREH-DLVIASYVLGEVPSLQDRITIVRQLWDLTRD 136
D + D+V+AS VL + D ++R L L +
Sbjct: 55 VLDAIDLDPGSFDVVVASNVLHHLA---DPRAVLRNLRRLLKP 94
|
Members of this family are SAM dependent methyltransferases. Length = 98 |
| >gnl|CDD|221804 pfam12847, Methyltransf_18, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 36.1 bits (84), Expect = 0.004
Identities = 27/120 (22%), Positives = 42/120 (35%), Gaps = 22/120 (18%)
Query: 30 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSM-QRAGQSLMQGPKDLPLIHSY 88
A+VLD G GTGS L ++P + +V V+ S M + A ++
Sbjct: 1 PGARVLDIGCGTGSLAIELARLFPGA--RVTGVDLSPEMLELARENAKLA--------LG 50
Query: 89 NSIQALNKDISKSEREH---DLVIASYVLGEVPSLQDRITIVRQLWDLTRD--VLVLVEP 143
I + D + D V G++ L + L L + LVL
Sbjct: 51 PRITFVQGDAPDALDLLEGFDAVFIGGGGGDLLEL------LDALASLLKPGGRLVLNAV 104
|
Protein in this family function as methyltransferases. Length = 104 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 400 | |||
| PF09243 | 274 | Rsm22: Mitochondrial small ribosomal subunit Rsm22 | 100.0 | |
| COG5459 | 484 | Predicted rRNA methylase [Translation, ribosomal s | 100.0 | |
| KOG2539 | 491 | consensus Mitochondrial/chloroplast ribosome small | 100.0 | |
| COG2226 | 238 | UbiE Methylase involved in ubiquinone/menaquinone | 99.42 | |
| KOG2539 | 491 | consensus Mitochondrial/chloroplast ribosome small | 99.41 | |
| PF01209 | 233 | Ubie_methyltran: ubiE/COQ5 methyltransferase famil | 99.4 | |
| PRK15451 | 247 | tRNA cmo(5)U34 methyltransferase; Provisional | 99.39 | |
| PF12847 | 112 | Methyltransf_18: Methyltransferase domain; PDB: 3G | 99.37 | |
| PLN02233 | 261 | ubiquinone biosynthesis methyltransferase | 99.32 | |
| TIGR00740 | 239 | methyltransferase, putative. A simple BLAST search | 99.31 | |
| PRK11036 | 255 | putative S-adenosyl-L-methionine-dependent methylt | 99.26 | |
| TIGR02752 | 231 | MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me | 99.24 | |
| TIGR03587 | 204 | Pse_Me-ase pseudaminic acid biosynthesis-associate | 99.2 | |
| PRK14103 | 255 | trans-aconitate 2-methyltransferase; Provisional | 99.2 | |
| TIGR00477 | 195 | tehB tellurite resistance protein TehB. Part of a | 99.19 | |
| PRK11207 | 197 | tellurite resistance protein TehB; Provisional | 99.18 | |
| PLN02396 | 322 | hexaprenyldihydroxybenzoate methyltransferase | 99.14 | |
| PRK05785 | 226 | hypothetical protein; Provisional | 99.13 | |
| PF13847 | 152 | Methyltransf_31: Methyltransferase domain; PDB: 3T | 99.12 | |
| PRK06202 | 232 | hypothetical protein; Provisional | 99.12 | |
| PF08241 | 95 | Methyltransf_11: Methyltransferase domain; InterPr | 99.11 | |
| PLN02244 | 340 | tocopherol O-methyltransferase | 99.11 | |
| PRK10258 | 251 | biotin biosynthesis protein BioC; Provisional | 99.1 | |
| COG4106 | 257 | Tam Trans-aconitate methyltransferase [General fun | 99.09 | |
| TIGR02072 | 240 | BioC biotin biosynthesis protein BioC. This enzyme | 99.08 | |
| PF05401 | 201 | NodS: Nodulation protein S (NodS); InterPro: IPR00 | 99.07 | |
| COG2227 | 243 | UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4- | 99.07 | |
| PTZ00098 | 263 | phosphoethanolamine N-methyltransferase; Provision | 99.07 | |
| PRK01683 | 258 | trans-aconitate 2-methyltransferase; Provisional | 99.06 | |
| PRK12335 | 287 | tellurite resistance protein TehB; Provisional | 99.06 | |
| PF08242 | 99 | Methyltransf_12: Methyltransferase domain; InterPr | 99.06 | |
| KOG4300 | 252 | consensus Predicted methyltransferase [General fun | 99.06 | |
| PRK08317 | 241 | hypothetical protein; Provisional | 99.05 | |
| PRK00216 | 239 | ubiE ubiquinone/menaquinone biosynthesis methyltra | 99.05 | |
| PF13649 | 101 | Methyltransf_25: Methyltransferase domain; PDB: 3B | 99.02 | |
| PF13489 | 161 | Methyltransf_23: Methyltransferase domain; PDB: 3J | 99.02 | |
| PLN02490 | 340 | MPBQ/MSBQ methyltransferase | 98.99 | |
| TIGR01934 | 223 | MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis | 98.98 | |
| PF03848 | 192 | TehB: Tellurite resistance protein TehB; InterPro: | 98.97 | |
| PLN02585 | 315 | magnesium protoporphyrin IX methyltransferase | 98.97 | |
| KOG1270 | 282 | consensus Methyltransferases [Coenzyme transport a | 98.94 | |
| PLN03075 | 296 | nicotianamine synthase; Provisional | 98.94 | |
| PRK15068 | 322 | tRNA mo(5)U34 methyltransferase; Provisional | 98.92 | |
| PRK07580 | 230 | Mg-protoporphyrin IX methyl transferase; Validated | 98.92 | |
| TIGR00452 | 314 | methyltransferase, putative. Known examples to dat | 98.91 | |
| smart00138 | 264 | MeTrc Methyltransferase, chemotaxis proteins. Meth | 98.9 | |
| PRK11873 | 272 | arsM arsenite S-adenosylmethyltransferase; Reviewe | 98.89 | |
| smart00828 | 224 | PKS_MT Methyltransferase in polyketide synthase (P | 98.88 | |
| PLN02336 | 475 | phosphoethanolamine N-methyltransferase | 98.87 | |
| PRK11088 | 272 | rrmA 23S rRNA methyltransferase A; Provisional | 98.86 | |
| TIGR00138 | 181 | gidB 16S rRNA methyltransferase GidB. GidB (glucos | 98.85 | |
| TIGR02021 | 219 | BchM-ChlM magnesium protoporphyrin O-methyltransfe | 98.84 | |
| PRK00121 | 202 | trmB tRNA (guanine-N(7)-)-methyltransferase; Revie | 98.84 | |
| PRK00107 | 187 | gidB 16S rRNA methyltransferase GidB; Reviewed | 98.84 | |
| PLN02336 | 475 | phosphoethanolamine N-methyltransferase | 98.83 | |
| TIGR02469 | 124 | CbiT precorrin-6Y C5,15-methyltransferase (decarbo | 98.79 | |
| TIGR01983 | 224 | UbiG ubiquinone biosynthesis O-methyltransferase. | 98.78 | |
| PRK05134 | 233 | bifunctional 3-demethylubiquinone-9 3-methyltransf | 98.77 | |
| KOG1540 | 296 | consensus Ubiquinone biosynthesis methyltransferas | 98.77 | |
| TIGR00537 | 179 | hemK_rel_arch HemK-related putative methylase. The | 98.77 | |
| PRK06922 | 677 | hypothetical protein; Provisional | 98.75 | |
| PRK11705 | 383 | cyclopropane fatty acyl phospholipid synthase; Pro | 98.75 | |
| PRK13944 | 205 | protein-L-isoaspartate O-methyltransferase; Provis | 98.73 | |
| TIGR02716 | 306 | C20_methyl_CrtF C-20 methyltransferase BchU. Membe | 98.72 | |
| KOG3010 | 261 | consensus Methyltransferase [General function pred | 98.71 | |
| PRK08287 | 187 | cobalt-precorrin-6Y C(15)-methyltransferase; Valid | 98.68 | |
| TIGR02081 | 194 | metW methionine biosynthesis protein MetW. This pr | 98.66 | |
| TIGR03438 | 301 | probable methyltransferase. This model represents | 98.66 | |
| TIGR03840 | 213 | TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d | 98.65 | |
| TIGR00080 | 215 | pimt protein-L-isoaspartate(D-aspartate) O-methylt | 98.64 | |
| PRK13942 | 212 | protein-L-isoaspartate O-methyltransferase; Provis | 98.64 | |
| PRK04266 | 226 | fibrillarin; Provisional | 98.64 | |
| PRK09489 | 342 | rsmC 16S ribosomal RNA m2G1207 methyltransferase; | 98.62 | |
| PRK04457 | 262 | spermidine synthase; Provisional | 98.61 | |
| PF05175 | 170 | MTS: Methyltransferase small domain; InterPro: IPR | 98.61 | |
| COG2230 | 283 | Cfa Cyclopropane fatty acid synthase and related m | 98.6 | |
| PRK15001 | 378 | SAM-dependent 23S ribosomal RNA mG1835 methyltrans | 98.57 | |
| TIGR00406 | 288 | prmA ribosomal protein L11 methyltransferase. Ribo | 98.57 | |
| PRK11188 | 209 | rrmJ 23S rRNA methyltransferase J; Provisional | 98.55 | |
| PF00891 | 241 | Methyltransf_2: O-methyltransferase; InterPro: IPR | 98.55 | |
| PF02353 | 273 | CMAS: Mycolic acid cyclopropane synthetase; InterP | 98.54 | |
| PRK00517 | 250 | prmA ribosomal protein L11 methyltransferase; Revi | 98.53 | |
| PF08003 | 315 | Methyltransf_9: Protein of unknown function (DUF16 | 98.53 | |
| PRK00377 | 198 | cbiT cobalt-precorrin-6Y C(15)-methyltransferase; | 98.51 | |
| PF13659 | 117 | Methyltransf_26: Methyltransferase domain; PDB: 3G | 98.5 | |
| PF07021 | 193 | MetW: Methionine biosynthesis protein MetW; InterP | 98.45 | |
| PRK13255 | 218 | thiopurine S-methyltransferase; Reviewed | 98.44 | |
| PRK14967 | 223 | putative methyltransferase; Provisional | 98.44 | |
| COG2264 | 300 | PrmA Ribosomal protein L11 methylase [Translation, | 98.42 | |
| TIGR00438 | 188 | rrmJ cell division protein FtsJ. | 98.42 | |
| PF06325 | 295 | PrmA: Ribosomal protein L11 methyltransferase (Prm | 98.41 | |
| KOG2361 | 264 | consensus Predicted methyltransferase [General fun | 98.41 | |
| PRK00312 | 212 | pcm protein-L-isoaspartate O-methyltransferase; Re | 98.41 | |
| cd02440 | 107 | AdoMet_MTases S-adenosylmethionine-dependent methy | 98.4 | |
| TIGR00091 | 194 | tRNA (guanine-N(7)-)-methyltransferase. In E. coli | 98.4 | |
| COG4976 | 287 | Predicted methyltransferase (contains TPR repeat) | 98.37 | |
| TIGR03534 | 251 | RF_mod_PrmC protein-(glutamine-N5) methyltransfera | 98.37 | |
| PRK09328 | 275 | N5-glutamine S-adenosyl-L-methionine-dependent met | 98.32 | |
| PRK00811 | 283 | spermidine synthase; Provisional | 98.31 | |
| smart00650 | 169 | rADc Ribosomal RNA adenine dimethylases. | 98.3 | |
| PF01135 | 209 | PCMT: Protein-L-isoaspartate(D-aspartate) O-methyl | 98.28 | |
| PRK07402 | 196 | precorrin-6B methylase; Provisional | 98.27 | |
| PRK13943 | 322 | protein-L-isoaspartate O-methyltransferase; Provis | 98.26 | |
| TIGR03533 | 284 | L3_gln_methyl protein-(glutamine-N5) methyltransfe | 98.26 | |
| PRK14966 | 423 | unknown domain/N5-glutamine S-adenosyl-L-methionin | 98.25 | |
| PTZ00146 | 293 | fibrillarin; Provisional | 98.25 | |
| TIGR00417 | 270 | speE spermidine synthase. the SpeE subunit of sper | 98.24 | |
| COG2242 | 187 | CobL Precorrin-6B methylase 2 [Coenzyme metabolism | 98.24 | |
| PRK14968 | 188 | putative methyltransferase; Provisional | 98.23 | |
| KOG1541 | 270 | consensus Predicted protein carboxyl methylase [Ge | 98.23 | |
| COG2518 | 209 | Pcm Protein-L-isoaspartate carboxylmethyltransfera | 98.23 | |
| PRK11805 | 307 | N5-glutamine S-adenosyl-L-methionine-dependent met | 98.22 | |
| PF05219 | 265 | DREV: DREV methyltransferase; InterPro: IPR007884 | 98.19 | |
| TIGR03704 | 251 | PrmC_rel_meth putative protein-(glutamine-N5) meth | 98.19 | |
| PRK01581 | 374 | speE spermidine synthase; Validated | 98.18 | |
| COG4123 | 248 | Predicted O-methyltransferase [General function pr | 98.18 | |
| TIGR00536 | 284 | hemK_fam HemK family putative methylases. The gene | 98.18 | |
| PRK01544 | 506 | bifunctional N5-glutamine S-adenosyl-L-methionine- | 98.17 | |
| COG2890 | 280 | HemK Methylase of polypeptide chain release factor | 98.13 | |
| PRK03522 | 315 | rumB 23S rRNA methyluridine methyltransferase; Rev | 98.13 | |
| PF01739 | 196 | CheR: CheR methyltransferase, SAM binding domain; | 98.13 | |
| PLN02781 | 234 | Probable caffeoyl-CoA O-methyltransferase | 98.13 | |
| PLN02232 | 160 | ubiquinone biosynthesis methyltransferase | 98.12 | |
| PRK14121 | 390 | tRNA (guanine-N(7)-)-methyltransferase; Provisiona | 98.06 | |
| TIGR01177 | 329 | conserved hypothetical protein TIGR01177. This fam | 98.05 | |
| COG2813 | 300 | RsmC 16S RNA G1207 methylase RsmC [Translation, ri | 98.05 | |
| COG2263 | 198 | Predicted RNA methylase [Translation, ribosomal st | 98.04 | |
| PHA03411 | 279 | putative methyltransferase; Provisional | 98.03 | |
| PF10294 | 173 | Methyltransf_16: Putative methyltransferase; Inter | 98.02 | |
| PHA03412 | 241 | putative methyltransferase; Provisional | 98.02 | |
| PRK13168 | 443 | rumA 23S rRNA m(5)U1939 methyltransferase; Reviewe | 98.01 | |
| PRK14901 | 434 | 16S rRNA methyltransferase B; Provisional | 97.99 | |
| KOG2899 | 288 | consensus Predicted methyltransferase [General fun | 97.98 | |
| TIGR00446 | 264 | nop2p NOL1/NOP2/sun family putative RNA methylase. | 97.95 | |
| PRK14903 | 431 | 16S rRNA methyltransferase B; Provisional | 97.95 | |
| PF03291 | 331 | Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 | 97.94 | |
| TIGR00563 | 426 | rsmB ribosomal RNA small subunit methyltransferase | 97.94 | |
| PRK14896 | 258 | ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 | 97.94 | |
| PLN02366 | 308 | spermidine synthase | 97.92 | |
| TIGR02085 | 374 | meth_trns_rumB 23S rRNA (uracil-5-)-methyltransfer | 97.91 | |
| PRK03612 | 521 | spermidine synthase; Provisional | 97.89 | |
| KOG1271 | 227 | consensus Methyltransferases [General function pre | 97.87 | |
| PLN02476 | 278 | O-methyltransferase | 97.86 | |
| TIGR00755 | 253 | ksgA dimethyladenosine transferase. Alternate name | 97.86 | |
| TIGR00478 | 228 | tly hemolysin TlyA family protein. Hemolysins are | 97.85 | |
| KOG2904 | 328 | consensus Predicted methyltransferase [General fun | 97.85 | |
| PF05891 | 218 | Methyltransf_PK: AdoMet dependent proline di-methy | 97.85 | |
| PRK10901 | 427 | 16S rRNA methyltransferase B; Provisional | 97.84 | |
| PRK15128 | 396 | 23S rRNA m(5)C1962 methyltransferase; Provisional | 97.84 | |
| PRK14904 | 445 | 16S rRNA methyltransferase B; Provisional | 97.83 | |
| PRK14902 | 444 | 16S rRNA methyltransferase B; Provisional | 97.81 | |
| COG1352 | 268 | CheR Methylase of chemotaxis methyl-accepting prot | 97.75 | |
| TIGR00479 | 431 | rumA 23S rRNA (uracil-5-)-methyltransferase RumA. | 97.75 | |
| PRK11783 | 702 | rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi | 97.74 | |
| COG4122 | 219 | Predicted O-methyltransferase [General function pr | 97.73 | |
| PRK13256 | 226 | thiopurine S-methyltransferase; Reviewed | 97.73 | |
| PF01596 | 205 | Methyltransf_3: O-methyltransferase; InterPro: IPR | 97.73 | |
| PF12147 | 311 | Methyltransf_20: Putative methyltransferase; Inter | 97.71 | |
| PRK10909 | 199 | rsmD 16S rRNA m(2)G966-methyltransferase; Provisio | 97.7 | |
| PRK00274 | 272 | ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 | 97.7 | |
| PRK10611 | 287 | chemotaxis methyltransferase CheR; Provisional | 97.65 | |
| COG2519 | 256 | GCD14 tRNA(1-methyladenosine) methyltransferase an | 97.63 | |
| PTZ00338 | 294 | dimethyladenosine transferase-like protein; Provis | 97.6 | |
| PLN02589 | 247 | caffeoyl-CoA O-methyltransferase | 97.6 | |
| PF05724 | 218 | TPMT: Thiopurine S-methyltransferase (TPMT); Inter | 97.58 | |
| PLN02672 | 1082 | methionine S-methyltransferase | 97.58 | |
| COG3963 | 194 | Phospholipid N-methyltransferase [Lipid metabolism | 97.53 | |
| PLN02823 | 336 | spermine synthase | 97.53 | |
| TIGR00095 | 189 | RNA methyltransferase, RsmD family. This model rep | 97.51 | |
| PF06080 | 204 | DUF938: Protein of unknown function (DUF938); Inte | 97.49 | |
| PRK04148 | 134 | hypothetical protein; Provisional | 97.48 | |
| PRK11727 | 321 | 23S rRNA mA1618 methyltransferase; Provisional | 97.48 | |
| KOG1500 | 517 | consensus Protein arginine N-methyltransferase CAR | 97.47 | |
| KOG2940 | 325 | consensus Predicted methyltransferase [General fun | 97.47 | |
| KOG1499 | 346 | consensus Protein arginine N-methyltransferase PRM | 97.37 | |
| KOG1975 | 389 | consensus mRNA cap methyltransferase [RNA processi | 97.34 | |
| PRK00050 | 296 | 16S rRNA m(4)C1402 methyltranserfase; Provisional | 97.24 | |
| KOG3178 | 342 | consensus Hydroxyindole-O-methyltransferase and re | 97.21 | |
| PF05185 | 448 | PRMT5: PRMT5 arginine-N-methyltransferase; InterPr | 97.19 | |
| TIGR03439 | 319 | methyl_EasF probable methyltransferase domain, Eas | 97.19 | |
| PF08704 | 247 | GCD14: tRNA methyltransferase complex GCD14 subuni | 97.17 | |
| PF01234 | 256 | NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: I | 97.11 | |
| PF03141 | 506 | Methyltransf_29: Putative S-adenosyl-L-methionine- | 97.03 | |
| TIGR02143 | 353 | trmA_only tRNA (uracil-5-)-methyltransferase. This | 96.93 | |
| PF11968 | 219 | DUF3321: Putative methyltransferase (DUF3321); Int | 96.93 | |
| COG3897 | 218 | Predicted methyltransferase [General function pred | 96.88 | |
| KOG1661 | 237 | consensus Protein-L-isoaspartate(D-aspartate) O-me | 96.86 | |
| KOG0820 | 315 | consensus Ribosomal RNA adenine dimethylase [RNA p | 96.85 | |
| KOG3420 | 185 | consensus Predicted RNA methylase [Translation, ri | 96.81 | |
| COG0421 | 282 | SpeE Spermidine synthase [Amino acid transport and | 96.79 | |
| COG0030 | 259 | KsgA Dimethyladenosine transferase (rRNA methylati | 96.77 | |
| PF13679 | 141 | Methyltransf_32: Methyltransferase domain | 96.76 | |
| PF01564 | 246 | Spermine_synth: Spermine/spermidine synthase; Inte | 96.75 | |
| PRK05031 | 362 | tRNA (uracil-5-)-methyltransferase; Validated | 96.73 | |
| KOG3987 | 288 | consensus Uncharacterized conserved protein DREV/C | 96.72 | |
| PRK00536 | 262 | speE spermidine synthase; Provisional | 96.66 | |
| PF01728 | 181 | FtsJ: FtsJ-like methyltransferase; InterPro: IPR00 | 96.64 | |
| KOG3191 | 209 | consensus Predicted N6-DNA-methyltransferase [Tran | 96.59 | |
| TIGR02987 | 524 | met_A_Alw26 type II restriction m6 adenine DNA met | 96.53 | |
| PRK11933 | 470 | yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; | 96.43 | |
| PF08123 | 205 | DOT1: Histone methylation protein DOT1 ; InterPro: | 96.31 | |
| PF03059 | 276 | NAS: Nicotianamine synthase protein; InterPro: IPR | 96.21 | |
| PF03602 | 183 | Cons_hypoth95: Conserved hypothetical protein 95; | 96.2 | |
| KOG3201 | 201 | consensus Uncharacterized conserved protein [Funct | 96.2 | |
| PF02527 | 184 | GidB: rRNA small subunit methyltransferase G; Inte | 96.06 | |
| PRK04338 | 382 | N(2),N(2)-dimethylguanosine tRNA methyltransferase | 95.94 | |
| COG0500 | 257 | SmtA SAM-dependent methyltransferases [Secondary m | 95.91 | |
| TIGR01444 | 143 | fkbM_fam methyltransferase, FkbM family. Members o | 95.89 | |
| PF07942 | 270 | N2227: N2227-like protein; InterPro: IPR012901 Thi | 95.84 | |
| PF02384 | 311 | N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 T | 95.8 | |
| COG2265 | 432 | TrmA SAM-dependent methyltransferases related to t | 95.78 | |
| PF05958 | 352 | tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferas | 95.74 | |
| PF00398 | 262 | RrnaAD: Ribosomal RNA adenine dimethylase; InterPr | 95.62 | |
| PF09445 | 163 | Methyltransf_15: RNA cap guanine-N2 methyltransfer | 95.6 | |
| PF01170 | 179 | UPF0020: Putative RNA methylase family UPF0020; In | 95.54 | |
| COG0357 | 215 | GidB Predicted S-adenosylmethionine-dependent meth | 95.48 | |
| PF10672 | 286 | Methyltrans_SAM: S-adenosylmethionine-dependent me | 95.47 | |
| PF05148 | 219 | Methyltransf_8: Hypothetical methyltransferase; In | 95.46 | |
| KOG1663 | 237 | consensus O-methyltransferase [Secondary metabolit | 95.36 | |
| PF04672 | 267 | Methyltransf_19: S-adenosyl methyltransferase; Int | 95.3 | |
| KOG2793 | 248 | consensus Putative N2,N2-dimethylguanosine tRNA me | 95.2 | |
| COG1092 | 393 | Predicted SAM-dependent methyltransferases [Genera | 95.04 | |
| PF01269 | 229 | Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibr | 94.97 | |
| PF11312 | 315 | DUF3115: Protein of unknown function (DUF3115); In | 94.97 | |
| PF02390 | 195 | Methyltransf_4: Putative methyltransferase ; Inter | 94.75 | |
| COG0742 | 187 | N6-adenine-specific methylase [DNA replication, re | 94.65 | |
| COG4076 | 252 | Predicted RNA methylase [General function predicti | 94.57 | |
| COG0220 | 227 | Predicted S-adenosylmethionine-dependent methyltra | 94.33 | |
| PRK11783 | 702 | rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi | 94.33 | |
| COG4301 | 321 | Uncharacterized conserved protein [Function unknow | 94.16 | |
| COG1041 | 347 | Predicted DNA modification methylase [DNA replicat | 94.02 | |
| PF07091 | 251 | FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: | 93.91 | |
| TIGR00308 | 374 | TRM1 tRNA(guanine-26,N2-N2) methyltransferase. Thi | 93.51 | |
| KOG3045 | 325 | consensus Predicted RNA methylase involved in rRNA | 93.13 | |
| COG0293 | 205 | FtsJ 23S rRNA methylase [Translation, ribosomal st | 93.08 | |
| COG1565 | 370 | Uncharacterized conserved protein [Function unknow | 92.87 | |
| KOG2651 | 476 | consensus rRNA adenine N-6-methyltransferase [RNA | 92.79 | |
| PRK01544 | 506 | bifunctional N5-glutamine S-adenosyl-L-methionine- | 92.53 | |
| COG0144 | 355 | Sun tRNA and rRNA cytosine-C5-methylases [Translat | 92.47 | |
| PF02636 | 252 | Methyltransf_28: Putative S-adenosyl-L-methionine- | 91.44 | |
| PF06962 | 140 | rRNA_methylase: Putative rRNA methylase; InterPro: | 91.42 | |
| KOG0024 | 354 | consensus Sorbitol dehydrogenase [Secondary metabo | 91.38 | |
| COG4262 | 508 | Predicted spermidine synthase with an N-terminal m | 91.0 | |
| PHA01634 | 156 | hypothetical protein | 90.74 | |
| KOG1331 | 293 | consensus Predicted methyltransferase [General fun | 90.56 | |
| PRK11760 | 357 | putative 23S rRNA C2498 ribose 2'-O-ribose methylt | 90.28 | |
| KOG1501 | 636 | consensus Arginine N-methyltransferase [General fu | 89.9 | |
| KOG2187 | 534 | consensus tRNA uracil-5-methyltransferase and rela | 89.62 | |
| PF02475 | 200 | Met_10: Met-10+ like-protein; InterPro: IPR003402 | 89.46 | |
| COG1063 | 350 | Tdh Threonine dehydrogenase and related Zn-depende | 89.45 | |
| cd08283 | 386 | FDH_like_1 Glutathione-dependent formaldehyde dehy | 88.37 | |
| COG1889 | 231 | NOP1 Fibrillarin-like rRNA methylase [Translation, | 88.23 | |
| PF04816 | 205 | DUF633: Family of unknown function (DUF633) ; Inte | 88.09 | |
| COG0116 | 381 | Predicted N6-adenine-specific DNA methylase [DNA r | 88.0 | |
| PF01189 | 283 | Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR | 86.75 | |
| TIGR00006 | 305 | S-adenosyl-methyltransferase MraW. Genetics paper | 86.28 | |
| COG1189 | 245 | Predicted rRNA methylase [Translation, ribosomal s | 85.02 | |
| PF13578 | 106 | Methyltransf_24: Methyltransferase domain; PDB: 3S | 84.63 | |
| COG2384 | 226 | Predicted SAM-dependent methyltransferase [General | 83.77 | |
| PF05971 | 299 | Methyltransf_10: Protein of unknown function (DUF8 | 83.53 | |
| PF03141 | 506 | Methyltransf_29: Putative S-adenosyl-L-methionine- | 83.29 | |
| PRK10742 | 250 | putative methyltransferase; Provisional | 82.94 | |
| COG0275 | 314 | Predicted S-adenosylmethionine-dependent methyltra | 81.81 | |
| PRK09424 | 509 | pntA NAD(P) transhydrogenase subunit alpha; Provis | 80.78 |
| >PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-75 Score=560.45 Aligned_cols=270 Identities=43% Similarity=0.770 Sum_probs=234.6
Q ss_pred hHHHHHHHHhHHHHHHHHHHHHHHCCCCCCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCC
Q 015771 2 RLLLMLLLECLLFTLLVTESFARRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKD 81 (400)
Q Consensus 2 ~~l~~~~~~~Ya~~~~vL~el~~rlp~~~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~ 81 (400)
-|++++++.+|+++++||.||++|+|+|+|.+|||+|||||+++||+.+.|+ ...++++||.|+.|+++++.++++..+
T Consensus 5 aY~~~r~p~~YA~~~~vl~El~~r~p~f~P~~vLD~GsGpGta~wAa~~~~~-~~~~~~~vd~s~~~~~l~~~l~~~~~~ 83 (274)
T PF09243_consen 5 AYLAARMPATYAAVYRVLSELRKRLPDFRPRSVLDFGSGPGTALWAAREVWP-SLKEYTCVDRSPEMLELAKRLLRAGPN 83 (274)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHhCcCCCCceEEEecCChHHHHHHHHHHhc-CceeeeeecCCHHHHHHHHHHHhcccc
Confidence 4899999999999999999999999999999999999999999999999999 788999999999999999999987543
Q ss_pred CCceeechhhhHhhhhcccCCCcccEEeecccccCCCCHHHHHHHHHHHHhccCCeEEEEcCCCCCchHHHHHHHHHHHH
Q 015771 82 LPLIHSYNSIQALNKDISKSEREHDLVIASYVLGEVPSLQDRITIVRQLWDLTRDVLVLVEPGTPQGSSIISQMRSHILW 161 (400)
Q Consensus 82 ~~~~~~~~~~~~l~~~l~~~~~~~DLVias~~L~eL~~~~~r~~~i~~Lw~~~gG~LVlVE~Gtp~Gf~~I~~aR~~lL~ 161 (400)
.... .....+.... ......||||++|+|+||++ ..|..++++||++..++|||||||||.||+.|++||++|+
T Consensus 84 ~~~~---~~~~~~~~~~-~~~~~~DLvi~s~~L~EL~~-~~r~~lv~~LW~~~~~~LVlVEpGt~~Gf~~i~~aR~~l~- 157 (274)
T PF09243_consen 84 NRNA---EWRRVLYRDF-LPFPPDDLVIASYVLNELPS-AARAELVRSLWNKTAPVLVLVEPGTPAGFRRIAEARDQLL- 157 (274)
T ss_pred cccc---hhhhhhhccc-ccCCCCcEEEEehhhhcCCc-hHHHHHHHHHHHhccCcEEEEcCCChHHHHHHHHHHHHHh-
Confidence 2211 0011111111 12234599999999999998 8999999999999888999999999999999999999986
Q ss_pred HhhhhhhhhhhhccccccccccchhhhccCCcEEEccCCCCCCCCCCCCCCceeeeeeccCChhHHHhhhccCCCCCCcc
Q 015771 162 MEKRKSRKYEARKSKDTNKETSKDLVTLRSGVHIVAPCPHEGRCPLENSGKYCHFVQRLQRTTSQRAYKRSKSEPLRGFE 241 (400)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvAPCpH~~~CPl~~~~~wChF~qr~~rp~~~r~~~~~~g~~~~~~e 241 (400)
+.++||||||||++.|||....+||||+||++|+++++..| +.. .++|
T Consensus 158 ----------------------------~~~~~v~APCph~~~CP~~~~~~wChf~~r~~~~~~~~~~k---~~~-~~~e 205 (274)
T PF09243_consen 158 ----------------------------EKGAHVVAPCPHDGPCPLLASEDWCHFSQRVERSPFHRLAK---SAG-LPYE 205 (274)
T ss_pred ----------------------------hCCCceECCCccCCCCCCCCCCCcccceeeeccchhhhhcc---ccc-CCcc
Confidence 46899999999999999998779999999999999888766 222 4899
Q ss_pred ceeeEEEEEEecCCCCCCCCCCCccchhhhhhhccCCCccccccHHHHHHhhhhcccccccccccccccCcccccCcCCC
Q 015771 242 DEKFSFVAFRRGERPRERWPLDGMKFDTLKEQHAKRNPEDLEIDYEDLLRLQAEAEVEPCKKEDLVNYESDEVQDDTVDS 321 (400)
Q Consensus 242 d~kfSYvvlrkg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (400)
|+|||||+.+|+++.
T Consensus 206 ~ekfSYl~~~~~~~~----------------------------------------------------------------- 220 (274)
T PF09243_consen 206 DEKFSYLAKGRGPRA----------------------------------------------------------------- 220 (274)
T ss_pred ccceeeeeecccccc-----------------------------------------------------------------
Confidence 999999766665421
Q ss_pred cccccccccccccccCCCCccccccCccccCCceEEeeccCCCCCCCCCceeEEEEeccCCchhhhhhhhhccCCCCC
Q 015771 322 DKDQEKGEEETIPADLGGGWGRIIFSPVRRGRQVAMDVCRSIKRDGSEGSFQHLVFTRSKNPTLHRLAKKSLWGDLWP 399 (400)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~wpRii~pP~kr~gHV~ld~Ct~~~~~~~~G~ler~~v~ks~~~~~Y~~ARks~wGDlwp 399 (400)
..|||||+||+||+|||+|||||| +|+|+|+|||||+| ++||+|||+.|||+||
T Consensus 221 -----------------~~~~Rii~~p~~~~~hv~~~~C~~------~G~l~~~~v~K~~g-~~y~~aRk~~wGD~~p 274 (274)
T PF09243_consen 221 -----------------PAWPRIIRPPLKRKGHVICDLCTP------DGQLERVVVTKRHG-ELYRCARKSKWGDLWP 274 (274)
T ss_pred -----------------cccchhcchhhccCCcEEEEEECC------CCCEEEEEEcccch-HHHHHHHhccccCCCC
Confidence 129999999999999999999998 99999999999888 8999999999999998
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation |
| >COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-68 Score=508.84 Aligned_cols=310 Identities=27% Similarity=0.484 Sum_probs=234.6
Q ss_pred hHHHHHHHHhHHHHHHHHHHHHHHCCCCCCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCC
Q 015771 2 RLLLMLLLECLLFTLLVTESFARRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKD 81 (400)
Q Consensus 2 ~~l~~~~~~~Ya~~~~vL~el~~rlp~~~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~ 81 (400)
-||+++++++|++++++|++++++.|+|.|++|||+|.|||+++||++++|| ....++.++.|+.+.+++..+..+...
T Consensus 85 Ayias~lp~~Yasv~asL~~L~~~~~dfapqsiLDvG~GPgtgl~A~n~i~P-dl~sa~ile~sp~lrkV~~tl~~nv~t 163 (484)
T COG5459 85 AYIASRLPQTYASVRASLDELQKRVPDFAPQSILDVGAGPGTGLWALNDIWP-DLKSAVILEASPALRKVGDTLAENVST 163 (484)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHhCCCcCcchhhccCCCCchhhhhhcccCC-CchhhhhhccCHHHHHHHHHHHhhccc
Confidence 3899999999999999999999999999999999999999999999999998 467899999999999999888775421
Q ss_pred --CCceeechhhhHhhhhcccCCCcccEEeecccccCCCCHHHHHHHHHHHHhc--cCCeEEEEcCCCCCchHHHHHHHH
Q 015771 82 --LPLIHSYNSIQALNKDISKSEREHDLVIASYVLGEVPSLQDRITIVRQLWDL--TRDVLVLVEPGTPQGSSIISQMRS 157 (400)
Q Consensus 82 --~~~~~~~~~~~~l~~~l~~~~~~~DLVias~~L~eL~~~~~r~~~i~~Lw~~--~gG~LVlVE~Gtp~Gf~~I~~aR~ 157 (400)
.++..... ..+ .-.++ ....|+|||+.+-|.+..++......|+.||+. +||.|||||+|||.||++|.+||+
T Consensus 164 ~~td~r~s~v-t~d-Rl~lp-~ad~ytl~i~~~eLl~d~~ek~i~~~ie~lw~l~~~gg~lVivErGtp~Gf~~I~rAR~ 240 (484)
T COG5459 164 EKTDWRASDV-TED-RLSLP-AADLYTLAIVLDELLPDGNEKPIQVNIERLWNLLAPGGHLVIVERGTPAGFERILRARQ 240 (484)
T ss_pred ccCCCCCCcc-chh-ccCCC-ccceeehhhhhhhhccccCcchHHHHHHHHHHhccCCCeEEEEeCCCchhHHHHHHHHH
Confidence 11111100 001 01122 234566666666665555556667799999997 799999999999999999999999
Q ss_pred HHHHHhhhhhhhhhhhccccccccccchhhhccCCcEEEccCCCCCCCCCCCC----CCceeeeeeccCChhHHHhhhcc
Q 015771 158 HILWMEKRKSRKYEARKSKDTNKETSKDLVTLRSGVHIVAPCPHEGRCPLENS----GKYCHFVQRLQRTTSQRAYKRSK 233 (400)
Q Consensus 158 ~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvAPCpH~~~CPl~~~----~~wChF~qr~~rp~~~r~~~~~~ 233 (400)
++|..++.. .+ ....+||+|||||+++||++.. .+||||+|++.||+|-+.++.-.
T Consensus 241 ~ll~~~~~~---------------~e-----~~~~ahiiAPCPH~~~CPl~v~ng~~~~~C~F~q~v~rs~fs~~~~~Rl 300 (484)
T COG5459 241 ILLAPGNFP---------------DE-----FNYFAHIIAPCPHQRKCPLQVPNGKDLDWCHFSQRVARSKFSIELKKRL 300 (484)
T ss_pred HHhcCCCCc---------------cc-----cccceeeeccCCCCCCCCccCCCCccccccchhHhhccCcchhHHHHHH
Confidence 999644311 00 2456999999999999999754 38999999999999888776411
Q ss_pred CCCCCCccceeeEEEEEEecCCCCCCCCCCCccchhhhhhhccCCCccccccHHHH-HHhhhhcccccccccccccccCc
Q 015771 234 SEPLRGFEDEKFSFVAFRRGERPRERWPLDGMKFDTLKEQHAKRNPEDLEIDYEDL-LRLQAEAEVEPCKKEDLVNYESD 312 (400)
Q Consensus 234 g~~~~~~ed~kfSYvvlrkg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 312 (400)
- ....+...|+|++++|+-. .+|. .+ .++.+|++.+.
T Consensus 301 h--r~s~D~s~~~~~~lkr~~~--rp~e--------------------------~~~er~~~DE~~l~------------ 338 (484)
T COG5459 301 H--RTSKDGSQGNASRLKRRAG--RPWE--------------------------ILFERSHKDEKFLK------------ 338 (484)
T ss_pred H--hhhccccccchhhhhhccC--CChh--------------------------hhhhhccchHHHHH------------
Confidence 1 1234567899999998742 2231 11 11222221100
Q ss_pred ccccCcCCCcccccccccccccccCCCCccccccCccccCCceEEeeccCCCCCCCCCceeEEEEeccCCchhhhhhhhh
Q 015771 313 EVQDDTVDSDKDQEKGEEETIPADLGGGWGRIIFSPVRRGRQVAMDVCRSIKRDGSEGSFQHLVFTRSKNPTLHRLAKKS 392 (400)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~wpRii~pP~kr~gHV~ld~Ct~~~~~~~~G~ler~~v~ks~~~~~Y~~ARks 392 (400)
+..-+...+.+|||||+||+||+|||+||+|.+ +|++|+|+||||+||++||+||||
T Consensus 339 -----------------~~~v~~pt~~~wpRII~pP~kr~GhV~idlC~~------dg~le~~lvtKs~gk~~yrlARks 395 (484)
T COG5459 339 -----------------EAAVRRPTANSWPRIIAPPVKRKGHVMIDLCAP------DGELEEWLVTKSDGKQIYRLARKS 395 (484)
T ss_pred -----------------HHHhcCccccccchhcCCccCCCCeEEEeecCC------cchhhhhcccccccHHHHHHHHhh
Confidence 000111124579999999999999999999998 999999999999999999999999
Q ss_pred ccCCCCCC
Q 015771 393 LWGDLWPF 400 (400)
Q Consensus 393 ~wGDlwp~ 400 (400)
.||||||.
T Consensus 396 ~wGDlfas 403 (484)
T COG5459 396 DWGDLFAS 403 (484)
T ss_pred ccchhhhh
Confidence 99999984
|
|
| >KOG2539 consensus Mitochondrial/chloroplast ribosome small subunit component [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-51 Score=407.69 Aligned_cols=282 Identities=28% Similarity=0.508 Sum_probs=230.2
Q ss_pred hHHHHHHHHhHHHHHHHHHHHHHHCCCCCCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCC--
Q 015771 2 RLLLMLLLECLLFTLLVTESFARRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGP-- 79 (400)
Q Consensus 2 ~~l~~~~~~~Ya~~~~vL~el~~rlp~~~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~-- 79 (400)
+|++.++.++|+.+.+++.|+..+.|.|+|..++|||+|.|...||+...|+.....|++||.|.+|+......+++.
T Consensus 172 ~~~~arld~gYa~v~~~~~e~~~~~p~f~pd~~~dfgsg~~~~~~a~~~lwr~t~~~~~~Vdrs~~~~~~~e~~lr~~~~ 251 (491)
T KOG2539|consen 172 VYPLARLDHGYALVTRSNKEINMRSPKFRPDLLRDFGSGAGNGGWAAVLLWRQTKREYSLVDRSRAMLKQSEKNLRDGSH 251 (491)
T ss_pred cccccccccchHHHHHHHHHHhhcCcccChHHHHHHHhhcccchhhhhhhcccccceeEeeccchHHHHHHHHhhcChhh
Confidence 477888999999999999999999999999999999999999999999999987899999999999999999988872
Q ss_pred CCCCceeechhhhHhhhhccc-CCCcccEEeecccccCCCCHHHHHHHHHHHHhc---cCCeEEEEcCCCCCchHHHHHH
Q 015771 80 KDLPLIHSYNSIQALNKDISK-SEREHDLVIASYVLGEVPSLQDRITIVRQLWDL---TRDVLVLVEPGTPQGSSIISQM 155 (400)
Q Consensus 80 ~~~~~~~~~~~~~~l~~~l~~-~~~~~DLVias~~L~eL~~~~~r~~~i~~Lw~~---~gG~LVlVE~Gtp~Gf~~I~~a 155 (400)
.+.+.+... -.....++. ....|||||++|.|+++.+...|...++++|++ +|+++||||+|++.||+.+++|
T Consensus 252 ~g~~~v~~~---~~~r~~~pi~~~~~yDlvi~ah~l~~~~s~~~R~~v~~s~~r~~~r~g~~lViIe~g~~~g~e~l~ea 328 (491)
T KOG2539|consen 252 IGEPIVRKL---VFHRQRLPIDIKNGYDLVICAHKLHELGSKFSRLDVPESLWRKTDRSGYFLVIIEKGTTMGLELLTEA 328 (491)
T ss_pred cCchhcccc---chhcccCCCCcccceeeEEeeeeeeccCCchhhhhhhHHHHHhccCCCceEEEEecCCccchhhHHHH
Confidence 233333321 012223343 344599999999999999999999999999997 4679999999999999999999
Q ss_pred HHHHHHHhhhhhhhhhhhccccccccccchhhhccCCcEEEccCCCCCCCCCCCCCC---ceeeeeeccCChhHHHhhhc
Q 015771 156 RSHILWMEKRKSRKYEARKSKDTNKETSKDLVTLRSGVHIVAPCPHEGRCPLENSGK---YCHFVQRLQRTTSQRAYKRS 232 (400)
Q Consensus 156 R~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvAPCpH~~~CPl~~~~~---wChF~qr~~rp~~~r~~~~~ 232 (400)
|+.+|..+.. .++ ....++|||||||+..||++..+. .|+|++++++-+.
T Consensus 329 R~~~l~~~~~------------------vd~--~~~~~~vlapcPh~l~cPl~~d~~~~~~C~f~~~~~~l~~------- 381 (491)
T KOG2539|consen 329 RQNLLDQEEE------------------VDY--EDVTGPVLAPCPHDLRCPLLRDSAVIIVCTFDARYRPLPK------- 381 (491)
T ss_pred HHhcccchhc------------------CCc--cccccceecCCCcccCCccccCCCcccccccchhcccccc-------
Confidence 9999864320 001 234589999999999999976433 6999999997441
Q ss_pred cCCCCCCccce---eeEEEEEEecCCCCCCCCCCCccchhhhhhhccCCCccccccHHHHHHhhhhcccccccccccccc
Q 015771 233 KSEPLRGFEDE---KFSFVAFRRGERPRERWPLDGMKFDTLKEQHAKRNPEDLEIDYEDLLRLQAEAEVEPCKKEDLVNY 309 (400)
Q Consensus 233 ~g~~~~~~ed~---kfSYvvlrkg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (400)
.|..+ .++.. +|||+|+-||.+..
T Consensus 382 s~~~~-~~e~~r~~~~sy~I~e~s~~~~---------------------------------------------------- 408 (491)
T KOG2539|consen 382 SGGKL-EDEEDRKSAYSYLILEESSRQS---------------------------------------------------- 408 (491)
T ss_pred CCCcC-chhhhhhhhhHHHHHhhccccc----------------------------------------------------
Confidence 12222 22222 48888888876421
Q ss_pred cCcccccCcCCCcccccccccccccccCCCCccccccCccccCCceEEeeccCCCCCCCCCceeEEEEeccCCc-hhhhh
Q 015771 310 ESDEVQDDTVDSDKDQEKGEEETIPADLGGGWGRIIFSPVRRGRQVAMDVCRSIKRDGSEGSFQHLVFTRSKNP-TLHRL 388 (400)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wpRii~pP~kr~gHV~ld~Ct~~~~~~~~G~ler~~v~ks~~~-~~Y~~ 388 (400)
+.+|||||+||+||+|||+|||||| +|.++|||+|||+++ .+|.+
T Consensus 409 ----------------------------~~~wpRIi~p~~kr~~hv~~dlC~p------~g~~q~~~~Tkskhg~dlys~ 454 (491)
T KOG2539|consen 409 ----------------------------TSSWPRIIKPPLKRGGHVTCDLCTP------NGPLQRRVLTKSKHGKDLYSC 454 (491)
T ss_pred ----------------------------cCCCcccccCccccCCeeEEecCCC------CCCeeEEEEecccccHHHHHH
Confidence 1369999999999999999999998 899999999998876 69999
Q ss_pred hhhhccCCCCCC
Q 015771 389 AKKSLWGDLWPF 400 (400)
Q Consensus 389 ARks~wGDlwp~ 400 (400)
|||+.|||||||
T Consensus 455 ar~s~wgdl~pl 466 (491)
T KOG2539|consen 455 ARKSRWGDLLPL 466 (491)
T ss_pred hhhhhccccccc
Confidence 999999999996
|
|
| >COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.42 E-value=5.9e-12 Score=118.64 Aligned_cols=112 Identities=18% Similarity=0.245 Sum_probs=88.8
Q ss_pred CCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCC--CCCceeechhhhHhhhhcccCCCcccE
Q 015771 30 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK--DLPLIHSYNSIQALNKDISKSEREHDL 107 (400)
Q Consensus 30 ~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~--~~~~~~~~~~~~~l~~~l~~~~~~~DL 107 (400)
.+.+|||+|||||-.+..+++..+ ..+++++|.|+.|++.|++.+.+.. ++.++... ...+|.++++||+
T Consensus 51 ~g~~vLDva~GTGd~a~~~~k~~g--~g~v~~~D~s~~ML~~a~~k~~~~~~~~i~fv~~d------Ae~LPf~D~sFD~ 122 (238)
T COG2226 51 PGDKVLDVACGTGDMALLLAKSVG--TGEVVGLDISESMLEVAREKLKKKGVQNVEFVVGD------AENLPFPDNSFDA 122 (238)
T ss_pred CCCEEEEecCCccHHHHHHHHhcC--CceEEEEECCHHHHHHHHHHhhccCccceEEEEec------hhhCCCCCCccCE
Confidence 578999999999999999998876 5799999999999999999998643 23333322 2357888999999
Q ss_pred EeecccccCCCCHHHHHHHHHHHHhccCCeEEEEcCCCCCchH
Q 015771 108 VIASYVLGEVPSLQDRITIVRQLWDLTRDVLVLVEPGTPQGSS 150 (400)
Q Consensus 108 Vias~~L~eL~~~~~r~~~i~~Lw~~~gG~LVlVE~Gtp~Gf~ 150 (400)
|+++|.|.++++....+.-+.+.+ +|||.++++|-+.|...-
T Consensus 123 vt~~fglrnv~d~~~aL~E~~RVl-KpgG~~~vle~~~p~~~~ 164 (238)
T COG2226 123 VTISFGLRNVTDIDKALKEMYRVL-KPGGRLLVLEFSKPDNPV 164 (238)
T ss_pred EEeeehhhcCCCHHHHHHHHHHhh-cCCeEEEEEEcCCCCchh
Confidence 999999999986654444444444 389999999999987653
|
|
| >KOG2539 consensus Mitochondrial/chloroplast ribosome small subunit component [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.41 E-value=9.4e-15 Score=146.19 Aligned_cols=286 Identities=18% Similarity=0.169 Sum_probs=160.0
Q ss_pred HHHHHHHHHHHHHHCCCCCCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCCCCceeechhh
Q 015771 12 LLFTLLVTESFARRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSI 91 (400)
Q Consensus 12 Ya~~~~vL~el~~rlp~~~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~~~~~~~~~~~ 91 (400)
...-++.+.+..+. |.+.+...||+|.|+++.+|+-...|+-....+--+.+|..|...+...+..
T Consensus 107 i~~~~r~v~~~~~~-~~i~e~~sld~~~~~~s~~~~~~~~~~i~~~~~~~iy~s~~~~~t~~~s~~~------------- 172 (491)
T KOG2539|consen 107 ISNKSRHVIEKGKG-PGIDELASLDVFPGTVSKVEENKFLKEIIYDLHKNIYPSQSLEYTSPESLNV------------- 172 (491)
T ss_pred HhHHHHHHHHHhcC-CCCCCccccccCCCchhhhhhhhHHHHHHHHHhccccccccccccCcccccc-------------
Confidence 33344455554444 7788899999999999988885555432112222333443332211111000
Q ss_pred hHhhhhcccCCCcccEEeecccccCCCCHHHHHHHHHHHHhc---cCCeEEEEcCCCCCchHHHHHHHHHHHHHhhhhhh
Q 015771 92 QALNKDISKSEREHDLVIASYVLGEVPSLQDRITIVRQLWDL---TRDVLVLVEPGTPQGSSIISQMRSHILWMEKRKSR 168 (400)
Q Consensus 92 ~~l~~~l~~~~~~~DLVias~~L~eL~~~~~r~~~i~~Lw~~---~gG~LVlVE~Gtp~Gf~~I~~aR~~lL~~~~~~~~ 168 (400)
+. +......|-+|+.++.+.+..+++.+-.++..+|.- .++.+++++++|-.+|..|.+.|.++...+.- .
T Consensus 173 --~~--~arld~gYa~v~~~~~e~~~~~p~f~pd~~~dfgsg~~~~~~a~~~lwr~t~~~~~~Vdrs~~~~~~~e~~--l 246 (491)
T KOG2539|consen 173 --YP--LARLDHGYALVTRSNKEINMRSPKFRPDLLRDFGSGAGNGGWAAVLLWRQTKREYSLVDRSRAMLKQSEKN--L 246 (491)
T ss_pred --cc--ccccccchHHHHHHHHHHhhcCcccChHHHHHHHhhcccchhhhhhhcccccceeEeeccchHHHHHHHHh--h
Confidence 00 011223455555555555553344444455555543 23455556666666666666666665532210 0
Q ss_pred hhhhhccccccccccchhhhccCCcEEEcc-CCCCCCCCCCCCC----CceeeeeeccCChhHHHhhhccCCCCCCccce
Q 015771 169 KYEARKSKDTNKETSKDLVTLRSGVHIVAP-CPHEGRCPLENSG----KYCHFVQRLQRTTSQRAYKRSKSEPLRGFEDE 243 (400)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~vvAP-CpH~~~CPl~~~~----~wChF~qr~~rp~~~r~~~~~~g~~~~~~ed~ 243 (400)
+ + + ...|.+++++ |+|.+.||...+. ..|+|.+-..-.++.|..-... . -+...-.
T Consensus 247 r-------~-----~-----~~~g~~~v~~~~~~r~~~pi~~~~~yDlvi~ah~l~~~~s~~~R~~v~~s-~-~r~~~r~ 307 (491)
T KOG2539|consen 247 R-------D-----G-----SHIGEPIVRKLVFHRQRLPIDIKNGYDLVICAHKLHELGSKFSRLDVPES-L-WRKTDRS 307 (491)
T ss_pred c-------C-----h-----hhcCchhccccchhcccCCCCcccceeeEEeeeeeeccCCchhhhhhhHH-H-HHhccCC
Confidence 0 0 0 1356899999 9999999987653 3788887544333433211000 0 0011223
Q ss_pred eeEEEEEEecCCCCCCCCCCCccchhhhhhhccCCCccccccHHHHHHhhhhcccccccccccccccCcccccCcCCCcc
Q 015771 244 KFSFVAFRRGERPRERWPLDGMKFDTLKEQHAKRNPEDLEIDYEDLLRLQAEAEVEPCKKEDLVNYESDEVQDDTVDSDK 323 (400)
Q Consensus 244 kfSYvvlrkg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (400)
.|+||+|.+|.. ++++.++++..-.-+++.++|| +. .
T Consensus 308 g~~lViIe~g~~---------~g~e~l~eaR~~~l~~~~~vd~-----------------------~~-~---------- 344 (491)
T KOG2539|consen 308 GYFLVIIEKGTT---------MGLELLTEARQNLLDQEEEVDY-----------------------ED-V---------- 344 (491)
T ss_pred CceEEEEecCCc---------cchhhHHHHHHhcccchhcCCc-----------------------cc-c----------
Confidence 678888888853 3344444321100011111111 00 0
Q ss_pred cccccccccccccCCCCccccccCccccCCceEEeeccCCCCCCCCCceeEEEEeccCCchhhhhhhhhccCCCC
Q 015771 324 DQEKGEEETIPADLGGGWGRIIFSPVRRGRQVAMDVCRSIKRDGSEGSFQHLVFTRSKNPTLHRLAKKSLWGDLW 398 (400)
Q Consensus 324 ~~~~~~~~~~~~~~~~~wpRii~pP~kr~gHV~ld~Ct~~~~~~~~G~ler~~v~ks~~~~~Y~~ARks~wGDlw 398 (400)
-.... -.||+.+.+|+++.+||+. +|+- +-.+++ +++|.++.+|+.+||+.|+++.
T Consensus 345 ------~~~vl----apcPh~l~cPl~~d~~~~~-~C~f------~~~~~~--l~~s~~~~~~e~~r~~~~sy~I 400 (491)
T KOG2539|consen 345 ------TGPVL----APCPHDLRCPLLRDSAVII-VCTF------DARYRP--LPKSGGKLEDEEDRKSAYSYLI 400 (491)
T ss_pred ------cccee----cCCCcccCCccccCCCccc-cccc------chhccc--cccCCCcCchhhhhhhhhHHHH
Confidence 00111 2599999999999999999 9995 777888 9999999999999999999875
|
|
| >PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities [] | Back alignment and domain information |
|---|
Probab=99.40 E-value=3.9e-13 Score=126.98 Aligned_cols=136 Identities=18% Similarity=0.206 Sum_probs=75.2
Q ss_pred HHHHHHHhHHHHHHHHHH---------HHHHCCCCCCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHH
Q 015771 4 LLMLLLECLLFTLLVTES---------FARRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQS 74 (400)
Q Consensus 4 l~~~~~~~Ya~~~~vL~e---------l~~rlp~~~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ 74 (400)
|+......|..+.++++- +.+.+..-.+.+|||+|||||..+..++...+ ...+|+++|.|+.|++.|++
T Consensus 12 ~Fd~ia~~YD~~n~~ls~g~~~~wr~~~~~~~~~~~g~~vLDv~~GtG~~~~~l~~~~~-~~~~v~~vD~s~~ML~~a~~ 90 (233)
T PF01209_consen 12 MFDRIAPRYDRMNDLLSFGQDRRWRRKLIKLLGLRPGDRVLDVACGTGDVTRELARRVG-PNGKVVGVDISPGMLEVARK 90 (233)
T ss_dssp -------------------------SHHHHHHT--S--EEEEET-TTSHHHHHHGGGSS----EEEEEES-HHHHHHHHH
T ss_pred HHHHHHHHhCCCccccCCcHHHHHHHHHHhccCCCCCCEEEEeCCChHHHHHHHHHHCC-CccEEEEecCCHHHHHHHHH
Confidence 444455566555554432 12222233557999999999999988876654 34689999999999999999
Q ss_pred hhcCCC--CCCceeechhhhHhhhhcccCCCcccEEeecccccCCCCHHHHHHHHHHHHh--ccCCeEEEEcCCCCCch
Q 015771 75 LMQGPK--DLPLIHSYNSIQALNKDISKSEREHDLVIASYVLGEVPSLQDRITIVRQLWD--LTRDVLVLVEPGTPQGS 149 (400)
Q Consensus 75 ll~~~~--~~~~~~~~~~~~~l~~~l~~~~~~~DLVias~~L~eL~~~~~r~~~i~~Lw~--~~gG~LVlVE~Gtp~Gf 149 (400)
.+.... ++.++.. + ...+|..+++||+|+++|.|.++++... .++++.+ +|||.++|+|.+.|...
T Consensus 91 k~~~~~~~~i~~v~~-----d-a~~lp~~d~sfD~v~~~fglrn~~d~~~---~l~E~~RVLkPGG~l~ile~~~p~~~ 160 (233)
T PF01209_consen 91 KLKREGLQNIEFVQG-----D-AEDLPFPDNSFDAVTCSFGLRNFPDRER---ALREMYRVLKPGGRLVILEFSKPRNP 160 (233)
T ss_dssp HHHHTT--SEEEEE------B-TTB--S-TT-EEEEEEES-GGG-SSHHH---HHHHHHHHEEEEEEEEEEEEEB-SSH
T ss_pred HHHhhCCCCeeEEEc-----C-HHHhcCCCCceeEEEHHhhHHhhCCHHH---HHHHHHHHcCCCeEEEEeeccCCCCc
Confidence 886532 2222222 1 2245667789999999999999987544 4555554 38999999999999864
|
Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C. |
| >PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=8e-12 Score=119.05 Aligned_cols=135 Identities=16% Similarity=0.224 Sum_probs=98.3
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHCCCCCCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCC--
Q 015771 4 LLMLLLECLLFTLLVTESFARRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKD-- 81 (400)
Q Consensus 4 l~~~~~~~Ya~~~~vL~el~~rlp~~~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~-- 81 (400)
|+..+.+.|..+..++..+..+... ...+|||+|||+|..+..++........+++++|+|+.|++.|+..+.....
T Consensus 31 ~~~~~~p~y~~~~~~~~~~~~~~~~-~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~ 109 (247)
T PRK15451 31 MIQRSVPGYSNIISMIGMLAERFVQ-PGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPT 109 (247)
T ss_pred HHHhcCCChHHHHHHHHHHHHHhCC-CCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCC
Confidence 5667788999999988887665432 3479999999999988877764322346899999999999999998865321
Q ss_pred -CCceeechhhhHhhhhcccCCCcccEEeecccccCCCCHHHHHHHHHHHHhc--cCCeEEEEcCCCCCc
Q 015771 82 -LPLIHSYNSIQALNKDISKSEREHDLVIASYVLGEVPSLQDRITIVRQLWDL--TRDVLVLVEPGTPQG 148 (400)
Q Consensus 82 -~~~~~~~~~~~~l~~~l~~~~~~~DLVias~~L~eL~~~~~r~~~i~~Lw~~--~gG~LVlVE~Gtp~G 148 (400)
+.++. .++. .++ ...+|+|+++++|++++ ..++..+++++.+. |||.|++.|.-.+.+
T Consensus 110 ~v~~~~-----~d~~-~~~--~~~~D~vv~~~~l~~l~-~~~~~~~l~~i~~~LkpGG~l~l~e~~~~~~ 170 (247)
T PRK15451 110 PVDVIE-----GDIR-DIA--IENASMVVLNFTLQFLE-PSERQALLDKIYQGLNPGGALVLSEKFSFED 170 (247)
T ss_pred CeEEEe-----CChh-hCC--CCCCCEEehhhHHHhCC-HHHHHHHHHHHHHhcCCCCEEEEEEecCCCc
Confidence 22221 1122 122 23599999999999997 55677788888764 899999998654443
|
|
| >PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A | Back alignment and domain information |
|---|
Probab=99.37 E-value=3.8e-12 Score=105.44 Aligned_cols=105 Identities=24% Similarity=0.274 Sum_probs=76.4
Q ss_pred CCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCC---CCCCceeechhhhHhhhhcccCCCcccE
Q 015771 31 PAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGP---KDLPLIHSYNSIQALNKDISKSEREHDL 107 (400)
Q Consensus 31 p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~---~~~~~~~~~~~~~~l~~~l~~~~~~~DL 107 (400)
+.+|||+|||+|..+.++++.++ ..++++||.|++|++.+++.+... .++.+++. ++ ........+||+
T Consensus 2 ~~~vLDlGcG~G~~~~~l~~~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~-----d~-~~~~~~~~~~D~ 73 (112)
T PF12847_consen 2 GGRVLDLGCGTGRLSIALARLFP--GARVVGVDISPEMLEIARERAAEEGLSDRITFVQG-----DA-EFDPDFLEPFDL 73 (112)
T ss_dssp TCEEEEETTTTSHHHHHHHHHHT--TSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEES-----CC-HGGTTTSSCEEE
T ss_pred CCEEEEEcCcCCHHHHHHHhcCC--CCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEEC-----cc-ccCcccCCCCCE
Confidence 47999999999999999888665 467999999999999999998322 22333332 22 111223457999
Q ss_pred Eeecc-cccCCCCHHHHHHHHHHHHhc--cCCeEEEEcC
Q 015771 108 VIASY-VLGEVPSLQDRITIVRQLWDL--TRDVLVLVEP 143 (400)
Q Consensus 108 Vias~-~L~eL~~~~~r~~~i~~Lw~~--~gG~LVlVE~ 143 (400)
|++.. +++.+....++..+++++++. |||.|||.++
T Consensus 74 v~~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~lvi~~~ 112 (112)
T PF12847_consen 74 VICSGFTLHFLLPLDERRRVLERIRRLLKPGGRLVINTC 112 (112)
T ss_dssp EEECSGSGGGCCHHHHHHHHHHHHHHHEEEEEEEEEEE-
T ss_pred EEECCCccccccchhHHHHHHHHHHHhcCCCcEEEEEEC
Confidence 99999 677665456777888888775 8999998753
|
... |
| >PLN02233 ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Probab=99.32 E-value=6e-11 Score=114.02 Aligned_cols=122 Identities=16% Similarity=0.165 Sum_probs=82.7
Q ss_pred CCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcC-----CCCCCceeechhhhHhhhhcccCCCc
Q 015771 30 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQG-----PKDLPLIHSYNSIQALNKDISKSERE 104 (400)
Q Consensus 30 ~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~-----~~~~~~~~~~~~~~~l~~~l~~~~~~ 104 (400)
.+.+|||+|||+|..+..+++.++ ...+|+++|+|++|++.|++.... ..++.++.. +.. .++...++
T Consensus 73 ~~~~VLDlGcGtG~~~~~la~~~~-~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~-----d~~-~lp~~~~s 145 (261)
T PLN02233 73 MGDRVLDLCCGSGDLAFLLSEKVG-SDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEG-----DAT-DLPFDDCY 145 (261)
T ss_pred CCCEEEEECCcCCHHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEc-----ccc-cCCCCCCC
Confidence 357999999999998887776654 235899999999999999876531 112222221 121 34555678
Q ss_pred ccEEeecccccCCCCHHHHHHHHHHHHhccCCeEEEEcCCCCCchHHHHHHHHHHH
Q 015771 105 HDLVIASYVLGEVPSLQDRITIVRQLWDLTRDVLVLVEPGTPQGSSIISQMRSHIL 160 (400)
Q Consensus 105 ~DLVias~~L~eL~~~~~r~~~i~~Lw~~~gG~LVlVE~Gtp~Gf~~I~~aR~~lL 160 (400)
||+|+++++|+++++...-..-+.+++ +|||.|+++|...+... .+....++++
T Consensus 146 fD~V~~~~~l~~~~d~~~~l~ei~rvL-kpGG~l~i~d~~~~~~~-~~~~~~~~~~ 199 (261)
T PLN02233 146 FDAITMGYGLRNVVDRLKAMQEMYRVL-KPGSRVSILDFNKSTQP-FTTSMQEWMI 199 (261)
T ss_pred EeEEEEecccccCCCHHHHHHHHHHHc-CcCcEEEEEECCCCCcH-HHHHHHHHHH
Confidence 999999999999986544333333444 38999999999877642 2334444443
|
|
| >TIGR00740 methyltransferase, putative | Back alignment and domain information |
|---|
Probab=99.31 E-value=5.5e-11 Score=112.51 Aligned_cols=128 Identities=19% Similarity=0.277 Sum_probs=93.2
Q ss_pred HHHhHHHHHHHHHHHHHHCCCCCCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCC---CCc
Q 015771 8 LLECLLFTLLVTESFARRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKD---LPL 84 (400)
Q Consensus 8 ~~~~Ya~~~~vL~el~~rlp~~~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~---~~~ 84 (400)
..+.|..+...+..+.++... ...+|||+|||+|..+..+...+.....+++++|+|+.|++.|+..+..... +.+
T Consensus 32 ~~p~y~~~~~~~~~l~~~~~~-~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~ 110 (239)
T TIGR00740 32 SVPGYSNIITAIGMLAERFVT-PDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEI 110 (239)
T ss_pred cCCCHHHHHHHHHHHHHHhCC-CCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEE
Confidence 345677887878777766532 3468999999999999888876543357899999999999999998765321 122
Q ss_pred eeechhhhHhhhhcccCCCcccEEeecccccCCCCHHHHHHHHHHHHhc--cCCeEEEEcCCC
Q 015771 85 IHSYNSIQALNKDISKSEREHDLVIASYVLGEVPSLQDRITIVRQLWDL--TRDVLVLVEPGT 145 (400)
Q Consensus 85 ~~~~~~~~~l~~~l~~~~~~~DLVias~~L~eL~~~~~r~~~i~~Lw~~--~gG~LVlVE~Gt 145 (400)
+. .++. .++ ...+|+|+++++|++++ ..++..+++++.+. +||.|++.|+-.
T Consensus 111 ~~-----~d~~-~~~--~~~~d~v~~~~~l~~~~-~~~~~~~l~~i~~~LkpgG~l~i~d~~~ 164 (239)
T TIGR00740 111 LC-----NDIR-HVE--IKNASMVILNFTLQFLP-PEDRIALLTKIYEGLNPNGVLVLSEKFR 164 (239)
T ss_pred EE-----CChh-hCC--CCCCCEEeeecchhhCC-HHHHHHHHHHHHHhcCCCeEEEEeeccc
Confidence 22 1222 122 23589999999999996 55677788887764 899999998744
|
A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily. |
| >PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.26 E-value=5.6e-11 Score=113.65 Aligned_cols=119 Identities=22% Similarity=0.262 Sum_probs=82.8
Q ss_pred HHHHHHHHHHHCCCCCCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCC---CCCceeechhh
Q 015771 15 TLLVTESFARRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK---DLPLIHSYNSI 91 (400)
Q Consensus 15 ~~~vL~el~~rlp~~~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~---~~~~~~~~~~~ 91 (400)
+.+.+.++...++ -.+.+|||+|||+|..+..++.. ..+|+++|+|+.|++.|++.+.... ++.++... .
T Consensus 30 ~~~~~~~~l~~l~-~~~~~vLDiGcG~G~~a~~la~~----g~~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d--~ 102 (255)
T PRK11036 30 LWQDLDRLLAELP-PRPLRVLDAGGGEGQTAIKLAEL----GHQVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCA--A 102 (255)
T ss_pred HHHHHHHHHHhcC-CCCCEEEEeCCCchHHHHHHHHc----CCEEEEEECCHHHHHHHHHHHHhcCCccceEEEEcC--H
Confidence 4455666666665 35679999999999988887742 4689999999999999998876532 12222211 1
Q ss_pred hHhhhhcccCCCcccEEeecccccCCCCHHHHHHHHHHHHhccCCeEEEEcCC
Q 015771 92 QALNKDISKSEREHDLVIASYVLGEVPSLQDRITIVRQLWDLTRDVLVLVEPG 144 (400)
Q Consensus 92 ~~l~~~l~~~~~~~DLVias~~L~eL~~~~~r~~~i~~Lw~~~gG~LVlVE~G 144 (400)
.++. +...++||+|++..+|+++.++......+.++++ |||.|+++...
T Consensus 103 ~~l~---~~~~~~fD~V~~~~vl~~~~~~~~~l~~~~~~Lk-pgG~l~i~~~n 151 (255)
T PRK11036 103 QDIA---QHLETPVDLILFHAVLEWVADPKSVLQTLWSVLR-PGGALSLMFYN 151 (255)
T ss_pred HHHh---hhcCCCCCEEEehhHHHhhCCHHHHHHHHHHHcC-CCeEEEEEEEC
Confidence 1221 1234689999999999999876554445555553 89999987553
|
|
| >TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase | Back alignment and domain information |
|---|
Probab=99.24 E-value=2e-10 Score=107.80 Aligned_cols=111 Identities=19% Similarity=0.228 Sum_probs=78.9
Q ss_pred CCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCC--CCCceeechhhhHhhhhcccCCCcccE
Q 015771 30 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK--DLPLIHSYNSIQALNKDISKSEREHDL 107 (400)
Q Consensus 30 ~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~--~~~~~~~~~~~~~l~~~l~~~~~~~DL 107 (400)
.+.+|||+|||+|..+..+++.++ ...+|+++|.|+.|++.++..+.... ++..+.. +.. .++...++||+
T Consensus 45 ~~~~vLDiGcG~G~~~~~la~~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~v~~~~~-----d~~-~~~~~~~~fD~ 117 (231)
T TIGR02752 45 AGTSALDVCCGTADWSIALAEAVG-PEGHVIGLDFSENMLSVGRQKVKDAGLHNVELVHG-----NAM-ELPFDDNSFDY 117 (231)
T ss_pred CCCEEEEeCCCcCHHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEe-----chh-cCCCCCCCccE
Confidence 357999999999999998887764 24589999999999999998875432 1212211 121 12334568999
Q ss_pred EeecccccCCCCHHHHHHHHHHHHhccCCeEEEEcCCCCCc
Q 015771 108 VIASYVLGEVPSLQDRITIVRQLWDLTRDVLVLVEPGTPQG 148 (400)
Q Consensus 108 Vias~~L~eL~~~~~r~~~i~~Lw~~~gG~LVlVE~Gtp~G 148 (400)
|+++++++++++.......+.+++ ++||.+++++.+.|..
T Consensus 118 V~~~~~l~~~~~~~~~l~~~~~~L-k~gG~l~~~~~~~~~~ 157 (231)
T TIGR02752 118 VTIGFGLRNVPDYMQVLREMYRVV-KPGGKVVCLETSQPTI 157 (231)
T ss_pred EEEecccccCCCHHHHHHHHHHHc-CcCeEEEEEECCCCCC
Confidence 999999999886654333333333 3899999999887653
|
MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species. |
| >TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase | Back alignment and domain information |
|---|
Probab=99.20 E-value=2.6e-10 Score=105.71 Aligned_cols=106 Identities=21% Similarity=0.312 Sum_probs=81.1
Q ss_pred CCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCCCCceeechhhhHhhhhcccCCCcccEEe
Q 015771 30 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDISKSEREHDLVI 109 (400)
Q Consensus 30 ~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~~~~~~~~~~~~~l~~~l~~~~~~~DLVi 109 (400)
++.+|||+|||+|..+..+...++ ..++++||+|+.|++.|+..+.+ ...... ++.. +...++||+|+
T Consensus 43 ~~~~VLDiGCG~G~~~~~L~~~~~--~~~v~giDiS~~~l~~A~~~~~~---~~~~~~-----d~~~--~~~~~sfD~V~ 110 (204)
T TIGR03587 43 KIASILELGANIGMNLAALKRLLP--FKHIYGVEINEYAVEKAKAYLPN---INIIQG-----SLFD--PFKDNFFDLVL 110 (204)
T ss_pred CCCcEEEEecCCCHHHHHHHHhCC--CCeEEEEECCHHHHHHHHhhCCC---CcEEEe-----eccC--CCCCCCEEEEE
Confidence 357899999999999988887664 35899999999999999876532 222221 1221 33467899999
Q ss_pred ecccccCCCCHHHHHHHHHHHHhccCCeEEEEcCCCCCc
Q 015771 110 ASYVLGEVPSLQDRITIVRQLWDLTRDVLVLVEPGTPQG 148 (400)
Q Consensus 110 as~~L~eL~~~~~r~~~i~~Lw~~~gG~LVlVE~Gtp~G 148 (400)
+..+|++++ +.....+++++.+..+++++|.|.-.|..
T Consensus 111 ~~~vL~hl~-p~~~~~~l~el~r~~~~~v~i~e~~~~~~ 148 (204)
T TIGR03587 111 TKGVLIHIN-PDNLPTAYRELYRCSNRYILIAEYYNPSP 148 (204)
T ss_pred ECChhhhCC-HHHHHHHHHHHHhhcCcEEEEEEeeCCCc
Confidence 999999996 67788999999987788999988754443
|
Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme |
| >PRK14103 trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.9e-10 Score=109.95 Aligned_cols=113 Identities=19% Similarity=0.266 Sum_probs=80.9
Q ss_pred HHHHHHHHCCCCCCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCCCCceeechhhhHhhhh
Q 015771 18 VTESFARRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKD 97 (400)
Q Consensus 18 vL~el~~rlp~~~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~~~~~~~~~~~~~l~~~ 97 (400)
.+..+...++...+.+|||+|||+|..+..+...++ ..+|+++|+|+.|++.|+.. ++.++.. ++. .
T Consensus 17 ~~~~ll~~l~~~~~~~vLDlGcG~G~~~~~l~~~~p--~~~v~gvD~s~~~~~~a~~~-----~~~~~~~-----d~~-~ 83 (255)
T PRK14103 17 PFYDLLARVGAERARRVVDLGCGPGNLTRYLARRWP--GAVIEALDSSPEMVAAARER-----GVDARTG-----DVR-D 83 (255)
T ss_pred HHHHHHHhCCCCCCCEEEEEcCCCCHHHHHHHHHCC--CCEEEEEECCHHHHHHHHhc-----CCcEEEc-----Chh-h
Confidence 345555566555668999999999999998888775 35899999999999998752 2333322 222 2
Q ss_pred cccCCCcccEEeecccccCCCCHHHHHHHHHHHHhccCCeEEEEcCCC
Q 015771 98 ISKSEREHDLVIASYVLGEVPSLQDRITIVRQLWDLTRDVLVLVEPGT 145 (400)
Q Consensus 98 l~~~~~~~DLVias~~L~eL~~~~~r~~~i~~Lw~~~gG~LVlVE~Gt 145 (400)
+. ..++||+|+++++|+++++......-+.+++ +|||.|++..++.
T Consensus 84 ~~-~~~~fD~v~~~~~l~~~~d~~~~l~~~~~~L-kpgG~l~~~~~~~ 129 (255)
T PRK14103 84 WK-PKPDTDVVVSNAALQWVPEHADLLVRWVDEL-APGSWIAVQVPGN 129 (255)
T ss_pred CC-CCCCceEEEEehhhhhCCCHHHHHHHHHHhC-CCCcEEEEEcCCC
Confidence 22 3468999999999999987654444444444 3899999987764
|
|
| >TIGR00477 tehB tellurite resistance protein TehB | Back alignment and domain information |
|---|
Probab=99.19 E-value=1.5e-10 Score=106.52 Aligned_cols=113 Identities=14% Similarity=0.182 Sum_probs=76.6
Q ss_pred HHHHHHHCCCCCCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCCCCceeechhhhHhhhhc
Q 015771 19 TESFARRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDI 98 (400)
Q Consensus 19 L~el~~rlp~~~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~~~~~~~~~~~~~l~~~l 98 (400)
..++.+.+....+.+|||+|||+|..+..+++ ...+|+++|.|+.|++.++.++... ++. +... ..++. ..
T Consensus 19 ~~~l~~~~~~~~~~~vLDiGcG~G~~a~~la~----~g~~V~~iD~s~~~l~~a~~~~~~~-~~~-v~~~--~~d~~-~~ 89 (195)
T TIGR00477 19 HSAVREAVKTVAPCKTLDLGCGQGRNSLYLSL----AGYDVRAWDHNPASIASVLDMKARE-NLP-LRTD--AYDIN-AA 89 (195)
T ss_pred hHHHHHHhccCCCCcEEEeCCCCCHHHHHHHH----CCCeEEEEECCHHHHHHHHHHHHHh-CCC-ceeE--eccch-hc
Confidence 33444445555678999999999998887774 2358999999999999988876532 222 1110 11221 11
Q ss_pred ccCCCcccEEeecccccCCCCHHHHHHHHHHHHh--ccCCeEEEEc
Q 015771 99 SKSEREHDLVIASYVLGEVPSLQDRITIVRQLWD--LTRDVLVLVE 142 (400)
Q Consensus 99 ~~~~~~~DLVias~~L~eL~~~~~r~~~i~~Lw~--~~gG~LVlVE 142 (400)
+ ..++||+|+++.++++++ ...+..+++++.+ ++||++++++
T Consensus 90 ~-~~~~fD~I~~~~~~~~~~-~~~~~~~l~~~~~~LkpgG~lli~~ 133 (195)
T TIGR00477 90 A-LNEDYDFIFSTVVFMFLQ-AGRVPEIIANMQAHTRPGGYNLIVA 133 (195)
T ss_pred c-ccCCCCEEEEecccccCC-HHHHHHHHHHHHHHhCCCcEEEEEE
Confidence 2 235799999999999885 4455666666655 3899977774
|
Part of a tellurite-reducing operon tehA and tehB |
| >PRK11207 tellurite resistance protein TehB; Provisional | Back alignment and domain information |
|---|
Probab=99.18 E-value=2.5e-10 Score=105.13 Aligned_cols=112 Identities=16% Similarity=0.204 Sum_probs=76.6
Q ss_pred HHHHHCCCCCCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCCCCceeechhhhHhhhhccc
Q 015771 21 SFARRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDISK 100 (400)
Q Consensus 21 el~~rlp~~~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~~~~~~~~~~~~~l~~~l~~ 100 (400)
++...++...+.+|||+|||+|..+..+++ ...+|+++|.|+.|++.++.++... ++..+... ..++.. .+
T Consensus 21 ~l~~~l~~~~~~~vLDiGcG~G~~a~~La~----~g~~V~gvD~S~~~i~~a~~~~~~~-~~~~v~~~--~~d~~~-~~- 91 (197)
T PRK11207 21 EVLEAVKVVKPGKTLDLGCGNGRNSLYLAA----NGFDVTAWDKNPMSIANLERIKAAE-NLDNLHTA--VVDLNN-LT- 91 (197)
T ss_pred HHHHhcccCCCCcEEEECCCCCHHHHHHHH----CCCEEEEEeCCHHHHHHHHHHHHHc-CCCcceEE--ecChhh-CC-
Confidence 334444444568999999999998887774 2458999999999999999877643 22211110 112221 22
Q ss_pred CCCcccEEeecccccCCCCHHHHHHHHHHHHhc--cCCeEEEEc
Q 015771 101 SEREHDLVIASYVLGEVPSLQDRITIVRQLWDL--TRDVLVLVE 142 (400)
Q Consensus 101 ~~~~~DLVias~~L~eL~~~~~r~~~i~~Lw~~--~gG~LVlVE 142 (400)
..++||+|++++++++++ ...+..+++++.+. +||++++++
T Consensus 92 ~~~~fD~I~~~~~~~~~~-~~~~~~~l~~i~~~LkpgG~~~~~~ 134 (197)
T PRK11207 92 FDGEYDFILSTVVLMFLE-AKTIPGLIANMQRCTKPGGYNLIVA 134 (197)
T ss_pred cCCCcCEEEEecchhhCC-HHHHHHHHHHHHHHcCCCcEEEEEE
Confidence 235799999999999885 55666777776654 899987764
|
|
| >PLN02396 hexaprenyldihydroxybenzoate methyltransferase | Back alignment and domain information |
|---|
Probab=99.14 E-value=5.8e-10 Score=110.13 Aligned_cols=105 Identities=16% Similarity=0.157 Sum_probs=77.1
Q ss_pred CCCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCC---CCCceeechhhhHhhhhcccCCCcc
Q 015771 29 FSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK---DLPLIHSYNSIQALNKDISKSEREH 105 (400)
Q Consensus 29 ~~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~---~~~~~~~~~~~~~l~~~l~~~~~~~ 105 (400)
+.+.+|||+|||+|..+..++. ...+|++||.|++|++.|+..+.... ++.++.. +.. .++...++|
T Consensus 130 ~~g~~ILDIGCG~G~~s~~La~----~g~~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~-----dae-~l~~~~~~F 199 (322)
T PLN02396 130 FEGLKFIDIGCGGGLLSEPLAR----MGATVTGVDAVDKNVKIARLHADMDPVTSTIEYLCT-----TAE-KLADEGRKF 199 (322)
T ss_pred CCCCEEEEeeCCCCHHHHHHHH----cCCEEEEEeCCHHHHHHHHHHHHhcCcccceeEEec-----CHH-HhhhccCCC
Confidence 3456999999999998877763 24589999999999999987654221 2222221 111 233345689
Q ss_pred cEEeecccccCCCCHHHHHHHHHHHHhccCCeEEEEcCC
Q 015771 106 DLVIASYVLGEVPSLQDRITIVRQLWDLTRDVLVLVEPG 144 (400)
Q Consensus 106 DLVias~~L~eL~~~~~r~~~i~~Lw~~~gG~LVlVE~G 144 (400)
|+|++..+|+++++....+..+.++++ |||.++|....
T Consensus 200 D~Vi~~~vLeHv~d~~~~L~~l~r~Lk-PGG~liist~n 237 (322)
T PLN02396 200 DAVLSLEVIEHVANPAEFCKSLSALTI-PNGATVLSTIN 237 (322)
T ss_pred CEEEEhhHHHhcCCHHHHHHHHHHHcC-CCcEEEEEECC
Confidence 999999999999988777777777764 89999988763
|
|
| >PRK05785 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.13 E-value=1.3e-09 Score=102.55 Aligned_cols=101 Identities=18% Similarity=0.321 Sum_probs=74.0
Q ss_pred CCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCCCCceeechhhhHhhhhcccCCCcccEEee
Q 015771 31 PAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDISKSEREHDLVIA 110 (400)
Q Consensus 31 p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~~~~~~~~~~~~~l~~~l~~~~~~~DLVia 110 (400)
+.+|||+|||||..+..+.+.. ..+++++|.|++|++.|+... ..+.. +.. .++..+++||+|++
T Consensus 52 ~~~VLDlGcGtG~~~~~l~~~~---~~~v~gvD~S~~Ml~~a~~~~------~~~~~-----d~~-~lp~~d~sfD~v~~ 116 (226)
T PRK05785 52 PKKVLDVAAGKGELSYHFKKVF---KYYVVALDYAENMLKMNLVAD------DKVVG-----SFE-ALPFRDKSFDVVMS 116 (226)
T ss_pred CCeEEEEcCCCCHHHHHHHHhc---CCEEEEECCCHHHHHHHHhcc------ceEEe-----chh-hCCCCCCCEEEEEe
Confidence 5799999999999988887654 258999999999999987642 11221 111 34556789999999
Q ss_pred cccccCCCCHHHHHHHHHHHHhccCCeEEEEcCCCCCch
Q 015771 111 SYVLGEVPSLQDRITIVRQLWDLTRDVLVLVEPGTPQGS 149 (400)
Q Consensus 111 s~~L~eL~~~~~r~~~i~~Lw~~~gG~LVlVE~Gtp~Gf 149 (400)
+++|+++++......-+.++++ + .++++|.++|.+.
T Consensus 117 ~~~l~~~~d~~~~l~e~~RvLk-p--~~~ile~~~p~~~ 152 (226)
T PRK05785 117 SFALHASDNIEKVIAEFTRVSR-K--QVGFIAMGKPDNV 152 (226)
T ss_pred cChhhccCCHHHHHHHHHHHhc-C--ceEEEEeCCCCcH
Confidence 9999998876655555555554 3 4667888888754
|
|
| >PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A | Back alignment and domain information |
|---|
Probab=99.12 E-value=1.9e-10 Score=101.11 Aligned_cols=106 Identities=21% Similarity=0.362 Sum_probs=74.4
Q ss_pred CCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCC--CCCceeechhhhHhhhhccc-CCCcccE
Q 015771 31 PAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK--DLPLIHSYNSIQALNKDISK-SEREHDL 107 (400)
Q Consensus 31 p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~--~~~~~~~~~~~~~l~~~l~~-~~~~~DL 107 (400)
..+|||+|||+|..+..+++... ...++++||.|+.|++.|+.+++... ++.+... ++.. ++. ..+.||+
T Consensus 4 ~~~iLDlGcG~G~~~~~l~~~~~-~~~~i~gvD~s~~~i~~a~~~~~~~~~~ni~~~~~-----d~~~-l~~~~~~~~D~ 76 (152)
T PF13847_consen 4 NKKILDLGCGTGRLLIQLAKELN-PGAKIIGVDISEEMIEYAKKRAKELGLDNIEFIQG-----DIED-LPQELEEKFDI 76 (152)
T ss_dssp TSEEEEET-TTSHHHHHHHHHST-TTSEEEEEESSHHHHHHHHHHHHHTTSTTEEEEES-----BTTC-GCGCSSTTEEE
T ss_pred CCEEEEecCcCcHHHHHHHHhcC-CCCEEEEEECcHHHHHHhhcccccccccccceEEe-----ehhc-cccccCCCeeE
Confidence 47999999999999999885432 24689999999999999999876432 2222222 2322 321 1168999
Q ss_pred EeecccccCCCCHHHHHHHHHHHHhccCCeEEEEcCC
Q 015771 108 VIASYVLGEVPSLQDRITIVRQLWDLTRDVLVLVEPG 144 (400)
Q Consensus 108 Vias~~L~eL~~~~~r~~~i~~Lw~~~gG~LVlVE~G 144 (400)
|++..+++.+.+...-...+.++++ ++|.++++++.
T Consensus 77 I~~~~~l~~~~~~~~~l~~~~~~lk-~~G~~i~~~~~ 112 (152)
T PF13847_consen 77 IISNGVLHHFPDPEKVLKNIIRLLK-PGGILIISDPN 112 (152)
T ss_dssp EEEESTGGGTSHHHHHHHHHHHHEE-EEEEEEEEEEE
T ss_pred EEEcCchhhccCHHHHHHHHHHHcC-CCcEEEEEECC
Confidence 9999999888755444444444443 69999999886
|
... |
| >PRK06202 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.12 E-value=1.8e-09 Score=101.67 Aligned_cols=109 Identities=15% Similarity=0.223 Sum_probs=76.8
Q ss_pred CCCeEEEEccchhHHHHHHHHHCCC--CCcEEEEEeCCHHHHHHHHHhhcCCCCCCceeechhhhHhhhhcccCCCcccE
Q 015771 30 SPAKVLDFGAGTGSAFWALREVWPR--SLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDISKSEREHDL 107 (400)
Q Consensus 30 ~p~~VLDvG~G~Gt~~~Al~~~~~~--~~~~v~~vD~S~~ml~~a~~ll~~~~~~~~~~~~~~~~~l~~~l~~~~~~~DL 107 (400)
++.+|||+|||+|..+..++...+. ...+|+++|+|++|++.|+...... ++.+.... . ..++...++||+
T Consensus 60 ~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~-~~~~~~~~-----~-~~l~~~~~~fD~ 132 (232)
T PRK06202 60 RPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRP-GVTFRQAV-----S-DELVAEGERFDV 132 (232)
T ss_pred CCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccC-CCeEEEEe-----c-ccccccCCCccE
Confidence 4579999999999988777654421 1248999999999999998875432 33322211 1 112224568999
Q ss_pred EeecccccCCCCHHHHHHHHHHHHhccCCeEEEEcCCCC
Q 015771 108 VIASYVLGEVPSLQDRITIVRQLWDLTRDVLVLVEPGTP 146 (400)
Q Consensus 108 Vias~~L~eL~~~~~r~~~i~~Lw~~~gG~LVlVE~Gtp 146 (400)
|+++++|+++++ .+...+++++.+...|.+++.+...+
T Consensus 133 V~~~~~lhh~~d-~~~~~~l~~~~r~~~~~~~i~dl~~~ 170 (232)
T PRK06202 133 VTSNHFLHHLDD-AEVVRLLADSAALARRLVLHNDLIRS 170 (232)
T ss_pred EEECCeeecCCh-HHHHHHHHHHHHhcCeeEEEeccccC
Confidence 999999999974 34567888888766677777776555
|
|
| >PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.11 E-value=3.3e-10 Score=90.07 Aligned_cols=93 Identities=22% Similarity=0.334 Sum_probs=66.7
Q ss_pred EEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCCCCceeechhhhHhhhhcccCCCcccEEeecccc
Q 015771 35 LDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDISKSEREHDLVIASYVL 114 (400)
Q Consensus 35 LDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~~~~~~~~~~~~~l~~~l~~~~~~~DLVias~~L 114 (400)
||+|||+|..+..+.+. ...+|+++|+|++|++.+++...... ..+... +. ..++.+.++||+|++.+++
T Consensus 1 LdiG~G~G~~~~~l~~~---~~~~v~~~D~~~~~~~~~~~~~~~~~-~~~~~~-----d~-~~l~~~~~sfD~v~~~~~~ 70 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKR---GGASVTGIDISEEMLEQARKRLKNEG-VSFRQG-----DA-EDLPFPDNSFDVVFSNSVL 70 (95)
T ss_dssp EEET-TTSHHHHHHHHT---TTCEEEEEES-HHHHHHHHHHTTTST-EEEEES-----BT-TSSSS-TT-EEEEEEESHG
T ss_pred CEecCcCCHHHHHHHhc---cCCEEEEEeCCHHHHHHHHhcccccC-chheee-----hH-HhCccccccccccccccce
Confidence 89999999999888865 25799999999999999999886532 222221 12 2345667899999999999
Q ss_pred cCCCCHHHHHHHHHHHHhc--cCCeEEE
Q 015771 115 GEVPSLQDRITIVRQLWDL--TRDVLVL 140 (400)
Q Consensus 115 ~eL~~~~~r~~~i~~Lw~~--~gG~LVl 140 (400)
++++ ++..+++++++. +||.++|
T Consensus 71 ~~~~---~~~~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 71 HHLE---DPEAALREIYRVLKPGGRLVI 95 (95)
T ss_dssp GGSS---HHHHHHHHHHHHEEEEEEEEE
T ss_pred eecc---CHHHHHHHHHHHcCcCeEEeC
Confidence 9994 455666666653 8999986
|
The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B .... |
| >PLN02244 tocopherol O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.11 E-value=1e-09 Score=109.53 Aligned_cols=109 Identities=13% Similarity=0.127 Sum_probs=76.1
Q ss_pred CCCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCCCCceeechhhhHhhhhcccCCCcccEE
Q 015771 29 FSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDISKSEREHDLV 108 (400)
Q Consensus 29 ~~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~~~~~~~~~~~~~l~~~l~~~~~~~DLV 108 (400)
-.+.+|||+|||+|..+..+++.++ .+|++||.|+.|++.++.+.+.......+.. ...+.. .++...+.||+|
T Consensus 117 ~~~~~VLDiGCG~G~~~~~La~~~g---~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~--~~~D~~-~~~~~~~~FD~V 190 (340)
T PLN02244 117 KRPKRIVDVGCGIGGSSRYLARKYG---ANVKGITLSPVQAARANALAAAQGLSDKVSF--QVADAL-NQPFEDGQFDLV 190 (340)
T ss_pred CCCCeEEEecCCCCHHHHHHHHhcC---CEEEEEECCHHHHHHHHHHHHhcCCCCceEE--EEcCcc-cCCCCCCCccEE
Confidence 3457999999999999888887653 5899999999999999988754321111110 011221 234456789999
Q ss_pred eecccccCCCCHHHHHHHHHHHHhccCCeEEEEcCC
Q 015771 109 IASYVLGEVPSLQDRITIVRQLWDLTRDVLVLVEPG 144 (400)
Q Consensus 109 ias~~L~eL~~~~~r~~~i~~Lw~~~gG~LVlVE~G 144 (400)
++..+++++++...-..-+.+++ +|||.|+|++..
T Consensus 191 ~s~~~~~h~~d~~~~l~e~~rvL-kpGG~lvi~~~~ 225 (340)
T PLN02244 191 WSMESGEHMPDKRKFVQELARVA-APGGRIIIVTWC 225 (340)
T ss_pred EECCchhccCCHHHHHHHHHHHc-CCCcEEEEEEec
Confidence 99999999986544344444444 389999998753
|
|
| >PRK10258 biotin biosynthesis protein BioC; Provisional | Back alignment and domain information |
|---|
Probab=99.10 E-value=3.3e-09 Score=101.01 Aligned_cols=113 Identities=15% Similarity=0.145 Sum_probs=78.7
Q ss_pred HHHHHHCCCCCCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCCCCceeechhhhHhhhhcc
Q 015771 20 ESFARRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDIS 99 (400)
Q Consensus 20 ~el~~rlp~~~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~~~~~~~~~~~~~l~~~l~ 99 (400)
..+.++++.-.+.+|||+|||+|..+..+.. ...+++++|.|+.|++.++..... ..++.. ++. .++
T Consensus 32 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~----~~~~v~~~D~s~~~l~~a~~~~~~---~~~~~~-----d~~-~~~ 98 (251)
T PRK10258 32 DALLAMLPQRKFTHVLDAGCGPGWMSRYWRE----RGSQVTALDLSPPMLAQARQKDAA---DHYLAG-----DIE-SLP 98 (251)
T ss_pred HHHHHhcCccCCCeEEEeeCCCCHHHHHHHH----cCCeEEEEECCHHHHHHHHhhCCC---CCEEEc-----Ccc-cCc
Confidence 3445555544567999999999988776664 246899999999999999886532 122221 222 233
Q ss_pred cCCCcccEEeecccccCCCCHHHHHHHHHHHHhccCCeEEEEcCCCC
Q 015771 100 KSEREHDLVIASYVLGEVPSLQDRITIVRQLWDLTRDVLVLVEPGTP 146 (400)
Q Consensus 100 ~~~~~~DLVias~~L~eL~~~~~r~~~i~~Lw~~~gG~LVlVE~Gtp 146 (400)
...++||+|+++.++++.++......-+.++++ +||.|++...+..
T Consensus 99 ~~~~~fD~V~s~~~l~~~~d~~~~l~~~~~~Lk-~gG~l~~~~~~~~ 144 (251)
T PRK10258 99 LATATFDLAWSNLAVQWCGNLSTALRELYRVVR-PGGVVAFTTLVQG 144 (251)
T ss_pred CCCCcEEEEEECchhhhcCCHHHHHHHHHHHcC-CCeEEEEEeCCCC
Confidence 345689999999999998776554444444553 7999999987653
|
|
| >COG4106 Tam Trans-aconitate methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.09 E-value=4.9e-10 Score=102.52 Aligned_cols=115 Identities=23% Similarity=0.333 Sum_probs=87.7
Q ss_pred HHHHHHHHCCCCCCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCCCCceeechhhhHhhhh
Q 015771 18 VTESFARRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKD 97 (400)
Q Consensus 18 vL~el~~rlp~~~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~~~~~~~~~~~~~l~~~ 97 (400)
-..+|..++|.-.+.+|.|+|||||..+-.+.+.||. ..++++|.|++|++.|+..+.+... .. .++..-
T Consensus 18 Pa~dLla~Vp~~~~~~v~DLGCGpGnsTelL~~RwP~--A~i~GiDsS~~Mla~Aa~rlp~~~f---~~-----aDl~~w 87 (257)
T COG4106 18 PARDLLARVPLERPRRVVDLGCGPGNSTELLARRWPD--AVITGIDSSPAMLAKAAQRLPDATF---EE-----ADLRTW 87 (257)
T ss_pred cHHHHHhhCCccccceeeecCCCCCHHHHHHHHhCCC--CeEeeccCCHHHHHHHHHhCCCCce---ec-----ccHhhc
Confidence 3556777788778899999999999999999999984 6899999999999999887765322 11 223321
Q ss_pred cccCCCcccEEeecccccCCCCHHHHHHHHHHHHhc--cCCeEEEEcCCCCC
Q 015771 98 ISKSEREHDLVIASYVLGEVPSLQDRITIVRQLWDL--TRDVLVLVEPGTPQ 147 (400)
Q Consensus 98 l~~~~~~~DLVias~~L~eL~~~~~r~~~i~~Lw~~--~gG~LVlVE~Gtp~ 147 (400)
.+....||++++-+|++|++.. +++.+|+.. |||.|.+--|++-.
T Consensus 88 --~p~~~~dllfaNAvlqWlpdH~---~ll~rL~~~L~Pgg~LAVQmPdN~d 134 (257)
T COG4106 88 --KPEQPTDLLFANAVLQWLPDHP---ELLPRLVSQLAPGGVLAVQMPDNLD 134 (257)
T ss_pred --CCCCccchhhhhhhhhhccccH---HHHHHHHHhhCCCceEEEECCCccC
Confidence 1356799999999999999754 455555554 89999988776543
|
|
| >TIGR02072 BioC biotin biosynthesis protein BioC | Back alignment and domain information |
|---|
Probab=99.08 E-value=2.7e-09 Score=99.72 Aligned_cols=107 Identities=21% Similarity=0.345 Sum_probs=78.9
Q ss_pred CCCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCCCCceeechhhhHhhhhcccCCCcccEE
Q 015771 29 FSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDISKSEREHDLV 108 (400)
Q Consensus 29 ~~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~~~~~~~~~~~~~l~~~l~~~~~~~DLV 108 (400)
..+.+|||+|||+|..+..+....+ ..+++++|+|+.|++.++..+.. ++.++.. ++. ..+...++||+|
T Consensus 33 ~~~~~vLDlG~G~G~~~~~l~~~~~--~~~~~~~D~~~~~~~~~~~~~~~--~~~~~~~-----d~~-~~~~~~~~fD~v 102 (240)
T TIGR02072 33 FIPASVLDIGCGTGYLTRALLKRFP--QAEFIALDISAGMLAQAKTKLSE--NVQFICG-----DAE-KLPLEDSSFDLI 102 (240)
T ss_pred CCCCeEEEECCCccHHHHHHHHhCC--CCcEEEEeChHHHHHHHHHhcCC--CCeEEec-----chh-hCCCCCCceeEE
Confidence 4567999999999998888887765 35699999999999998887652 3333222 222 223345689999
Q ss_pred eecccccCCCCHHHHHHHHHHHHhccCCeEEEEcCCCC
Q 015771 109 IASYVLGEVPSLQDRITIVRQLWDLTRDVLVLVEPGTP 146 (400)
Q Consensus 109 ias~~L~eL~~~~~r~~~i~~Lw~~~gG~LVlVE~Gtp 146 (400)
+++++|+++.+.......+.++++ +||.+++.+++..
T Consensus 103 i~~~~l~~~~~~~~~l~~~~~~L~-~~G~l~~~~~~~~ 139 (240)
T TIGR02072 103 VSNLALQWCDDLSQALSELARVLK-PGGLLAFSTFGPG 139 (240)
T ss_pred EEhhhhhhccCHHHHHHHHHHHcC-CCcEEEEEeCCcc
Confidence 999999999776655556666664 7999999987654
|
This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology. |
| >PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins | Back alignment and domain information |
|---|
Probab=99.07 E-value=6.5e-10 Score=101.08 Aligned_cols=113 Identities=19% Similarity=0.218 Sum_probs=80.7
Q ss_pred CeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCCCCceeechhhhHhhhhcccCCCcccEEeec
Q 015771 32 AKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDISKSEREHDLVIAS 111 (400)
Q Consensus 32 ~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~~~~~~~~~~~~~l~~~l~~~~~~~DLVias 111 (400)
.++||+|||.|.++-.++. ....++++|.|+..++.|++.+.+..++.+... ++... .+.++|||||++
T Consensus 45 ~~alEvGCs~G~lT~~LA~----rCd~LlavDis~~Al~~Ar~Rl~~~~~V~~~~~-----dvp~~--~P~~~FDLIV~S 113 (201)
T PF05401_consen 45 RRALEVGCSIGVLTERLAP----RCDRLLAVDISPRALARARERLAGLPHVEWIQA-----DVPEF--WPEGRFDLIVLS 113 (201)
T ss_dssp EEEEEE--TTSHHHHHHGG----GEEEEEEEES-HHHHHHHHHHTTT-SSEEEEES------TTT-----SS-EEEEEEE
T ss_pred ceeEecCCCccHHHHHHHH----hhCceEEEeCCHHHHHHHHHhcCCCCCeEEEEC-----cCCCC--CCCCCeeEEEEe
Confidence 6899999999999988884 456899999999999999999987655443332 23322 246799999999
Q ss_pred ccccCCCCHHHHHHHHHHHHhc--cCCeEEEEcC--------CCCCchHHHHHH
Q 015771 112 YVLGEVPSLQDRITIVRQLWDL--TRDVLVLVEP--------GTPQGSSIISQM 155 (400)
Q Consensus 112 ~~L~eL~~~~~r~~~i~~Lw~~--~gG~LVlVE~--------Gtp~Gf~~I~~a 155 (400)
-++.+|.+.++...++.++... |||.||+--. |++.|-+.|.++
T Consensus 114 EVlYYL~~~~~L~~~l~~l~~~L~pgG~LV~g~~rd~~c~~wgh~~ga~tv~~~ 167 (201)
T PF05401_consen 114 EVLYYLDDAEDLRAALDRLVAALAPGGHLVFGHARDANCRRWGHAAGAETVLEM 167 (201)
T ss_dssp S-GGGSSSHHHHHHHHHHHHHTEEEEEEEEEEEE-HHHHHHTT-S--HHHHHHH
T ss_pred hHhHcCCCHHHHHHHHHHHHHHhCCCCEEEEEEecCCcccccCcccchHHHHHH
Confidence 9999998777788888998886 8999998743 677787777443
|
The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A. |
| >COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.07 E-value=5.9e-10 Score=104.00 Aligned_cols=105 Identities=18% Similarity=0.216 Sum_probs=76.3
Q ss_pred CCCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCC-CCCceeechhhhHhhhhcccCCCcccE
Q 015771 29 FSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK-DLPLIHSYNSIQALNKDISKSEREHDL 107 (400)
Q Consensus 29 ~~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~-~~~~~~~~~~~~~l~~~l~~~~~~~DL 107 (400)
+...+|||+|||-|.++..++. ....|+++|.|+.+++.|+....... .+.+.. ...+++. ...++||+
T Consensus 58 l~g~~vLDvGCGgG~Lse~mAr----~Ga~VtgiD~se~~I~~Ak~ha~e~gv~i~y~~--~~~edl~----~~~~~FDv 127 (243)
T COG2227 58 LPGLRVLDVGCGGGILSEPLAR----LGASVTGIDASEKPIEVAKLHALESGVNIDYRQ--ATVEDLA----SAGGQFDV 127 (243)
T ss_pred CCCCeEEEecCCccHhhHHHHH----CCCeeEEecCChHHHHHHHHhhhhccccccchh--hhHHHHH----hcCCCccE
Confidence 4568999999999988877773 45799999999999999997765432 111221 1122332 23379999
Q ss_pred EeecccccCCCCHHHHHHHHHHHHhccCCeEEEEcCC
Q 015771 108 VIASYVLGEVPSLQDRITIVRQLWDLTRDVLVLVEPG 144 (400)
Q Consensus 108 Vias~~L~eL~~~~~r~~~i~~Lw~~~gG~LVlVE~G 144 (400)
|+|..||.+++++..-.....+|.+ |||.+++....
T Consensus 128 V~cmEVlEHv~dp~~~~~~c~~lvk-P~G~lf~STin 163 (243)
T COG2227 128 VTCMEVLEHVPDPESFLRACAKLVK-PGGILFLSTIN 163 (243)
T ss_pred EEEhhHHHccCCHHHHHHHHHHHcC-CCcEEEEeccc
Confidence 9999999999988765555555553 89999988664
|
|
| >PTZ00098 phosphoethanolamine N-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.07 E-value=2.8e-09 Score=102.58 Aligned_cols=106 Identities=14% Similarity=0.232 Sum_probs=75.4
Q ss_pred CCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCCCCceeechhhhHhhhhcccCCCcccEEe
Q 015771 30 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDISKSEREHDLVI 109 (400)
Q Consensus 30 ~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~~~~~~~~~~~~~l~~~l~~~~~~~DLVi 109 (400)
...+|||+|||+|..+..++..+ ..+|+++|.|+.|++.|+..+....++.+... ++. ..+.+.++||+|+
T Consensus 52 ~~~~VLDiGcG~G~~a~~la~~~---~~~v~giD~s~~~~~~a~~~~~~~~~i~~~~~-----D~~-~~~~~~~~FD~V~ 122 (263)
T PTZ00098 52 ENSKVLDIGSGLGGGCKYINEKY---GAHVHGVDICEKMVNIAKLRNSDKNKIEFEAN-----DIL-KKDFPENTFDMIY 122 (263)
T ss_pred CCCEEEEEcCCCChhhHHHHhhc---CCEEEEEECCHHHHHHHHHHcCcCCceEEEEC-----Ccc-cCCCCCCCeEEEE
Confidence 34799999999999877766544 25899999999999999987654222222211 121 2233457899999
Q ss_pred ecccccCCCCHHHHHHHHHHHHhc--cCCeEEEEcCCC
Q 015771 110 ASYVLGEVPSLQDRITIVRQLWDL--TRDVLVLVEPGT 145 (400)
Q Consensus 110 as~~L~eL~~~~~r~~~i~~Lw~~--~gG~LVlVE~Gt 145 (400)
+..++.+++ ..++..+++++.+. |||.|++.+...
T Consensus 123 s~~~l~h~~-~~d~~~~l~~i~r~LkPGG~lvi~d~~~ 159 (263)
T PTZ00098 123 SRDAILHLS-YADKKKLFEKCYKWLKPNGILLITDYCA 159 (263)
T ss_pred EhhhHHhCC-HHHHHHHHHHHHHHcCCCcEEEEEEecc
Confidence 999888875 34566667666653 899999998754
|
|
| >PRK01683 trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.06 E-value=3.4e-09 Score=101.22 Aligned_cols=113 Identities=21% Similarity=0.357 Sum_probs=77.8
Q ss_pred HHHHHHCCCCCCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCCCCceeechhhhHhhhhcc
Q 015771 20 ESFARRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDIS 99 (400)
Q Consensus 20 ~el~~rlp~~~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~~~~~~~~~~~~~l~~~l~ 99 (400)
.++...++.-.+.+|||+|||+|..+..+++.++ ..+++++|+|+.|++.++..+.+ +.++.. ++. .+.
T Consensus 21 ~~ll~~~~~~~~~~vLDiGcG~G~~~~~la~~~~--~~~v~gvD~s~~~i~~a~~~~~~---~~~~~~-----d~~-~~~ 89 (258)
T PRK01683 21 RDLLARVPLENPRYVVDLGCGPGNSTELLVERWP--AARITGIDSSPAMLAEARSRLPD---CQFVEA-----DIA-SWQ 89 (258)
T ss_pred HHHHhhCCCcCCCEEEEEcccCCHHHHHHHHHCC--CCEEEEEECCHHHHHHHHHhCCC---CeEEEC-----chh-ccC
Confidence 3444444444567999999999999888887765 35899999999999999887542 222221 122 111
Q ss_pred cCCCcccEEeecccccCCCCHHHHHHHHHHHHhccCCeEEEEcCCC
Q 015771 100 KSEREHDLVIASYVLGEVPSLQDRITIVRQLWDLTRDVLVLVEPGT 145 (400)
Q Consensus 100 ~~~~~~DLVias~~L~eL~~~~~r~~~i~~Lw~~~gG~LVlVE~Gt 145 (400)
...+||+|+++++|+++++......-+.++++ +||.+++.-+++
T Consensus 90 -~~~~fD~v~~~~~l~~~~d~~~~l~~~~~~Lk-pgG~~~~~~~~~ 133 (258)
T PRK01683 90 -PPQALDLIFANASLQWLPDHLELFPRLVSLLA-PGGVLAVQMPDN 133 (258)
T ss_pred -CCCCccEEEEccChhhCCCHHHHHHHHHHhcC-CCcEEEEECCCC
Confidence 23589999999999999865443333444442 799999875554
|
|
| >PRK12335 tellurite resistance protein TehB; Provisional | Back alignment and domain information |
|---|
Probab=99.06 E-value=1.3e-09 Score=106.18 Aligned_cols=104 Identities=21% Similarity=0.240 Sum_probs=74.6
Q ss_pred CCCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCCCCceeechhhhHhhhhcccCCCcccEE
Q 015771 29 FSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDISKSEREHDLV 108 (400)
Q Consensus 29 ~~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~~~~~~~~~~~~~l~~~l~~~~~~~DLV 108 (400)
..+.+|||+|||+|..+..++. ...+|+++|.|+.|++.+++.+... ++. +... ..++.. .. ..++||+|
T Consensus 119 ~~~~~vLDlGcG~G~~~~~la~----~g~~V~avD~s~~ai~~~~~~~~~~-~l~-v~~~--~~D~~~-~~-~~~~fD~I 188 (287)
T PRK12335 119 VKPGKALDLGCGQGRNSLYLAL----LGFDVTAVDINQQSLENLQEIAEKE-NLN-IRTG--LYDINS-AS-IQEEYDFI 188 (287)
T ss_pred cCCCCEEEeCCCCCHHHHHHHH----CCCEEEEEECCHHHHHHHHHHHHHc-CCc-eEEE--Eechhc-cc-ccCCccEE
Confidence 4567999999999998888774 2368999999999999998877643 221 1110 112221 11 25689999
Q ss_pred eecccccCCCCHHHHHHHHHHHHhc--cCCeEEEEcC
Q 015771 109 IASYVLGEVPSLQDRITIVRQLWDL--TRDVLVLVEP 143 (400)
Q Consensus 109 ias~~L~eL~~~~~r~~~i~~Lw~~--~gG~LVlVE~ 143 (400)
++..+|++++ ...+..+++++.+. +||++++++.
T Consensus 189 ~~~~vl~~l~-~~~~~~~l~~~~~~LkpgG~~l~v~~ 224 (287)
T PRK12335 189 LSTVVLMFLN-RERIPAIIKNMQEHTNPGGYNLIVCA 224 (287)
T ss_pred EEcchhhhCC-HHHHHHHHHHHHHhcCCCcEEEEEEe
Confidence 9999999986 55666777777654 8999888754
|
|
| >PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.06 E-value=1.8e-11 Score=99.62 Aligned_cols=97 Identities=26% Similarity=0.315 Sum_probs=54.1
Q ss_pred EEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCCCCceeechhhhHhhhhcccCCCcccEEeecccc
Q 015771 35 LDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDISKSEREHDLVIASYVL 114 (400)
Q Consensus 35 LDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~~~~~~~~~~~~~l~~~l~~~~~~~DLVias~~L 114 (400)
||+|||+|..+..+.+.++ ..+|+++|+|+.|++.+++.+............ ............++||+|+++++|
T Consensus 1 LdiGcG~G~~~~~l~~~~~--~~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~fD~V~~~~vl 76 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELP--DARYTGVDISPSMLERARERLAELGNDNFERLR--FDVLDLFDYDPPESFDLVVASNVL 76 (99)
T ss_dssp -EESTTTS-TTTTHHHHC---EEEEEEEESSSSTTSTTCCCHHHCT---EEEEE----SSS---CCC----SEEEEE-TT
T ss_pred CEeCccChHHHHHHHHhCC--CCEEEEEECCHHHHHHHHHHhhhcCCcceeEEE--eecCChhhcccccccceehhhhhH
Confidence 8999999999988887774 579999999999998777766543321111100 000110001122589999999999
Q ss_pred cCCCCHHHHHHHHHHHHhc--cCCeE
Q 015771 115 GEVPSLQDRITIVRQLWDL--TRDVL 138 (400)
Q Consensus 115 ~eL~~~~~r~~~i~~Lw~~--~gG~L 138 (400)
+++++. ..+++++.+. |||.|
T Consensus 77 ~~l~~~---~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 77 HHLEDI---EAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp S--S-H---HHHHHHHTTT-TSS-EE
T ss_pred hhhhhH---HHHHHHHHHHcCCCCCC
Confidence 999544 3555555543 78876
|
The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A. |
| >KOG4300 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.06 E-value=6.2e-10 Score=101.14 Aligned_cols=119 Identities=19% Similarity=0.388 Sum_probs=85.1
Q ss_pred CeEEEEccchhHHHHHHHHHCC-CCCcEEEEEeCCHHHHHHHHHhhcCCCCCCceeechhhhHhhhhcc-cCCCcccEEe
Q 015771 32 AKVLDFGAGTGSAFWALREVWP-RSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDIS-KSEREHDLVI 109 (400)
Q Consensus 32 ~~VLDvG~G~Gt~~~Al~~~~~-~~~~~v~~vD~S~~ml~~a~~ll~~~~~~~~~~~~~~~~~l~~~l~-~~~~~~DLVi 109 (400)
..||++|||||+.. ..++ ....+||++|+++.|.+++.+.+.+.....+.. +.... ..+++ ..+.+||.||
T Consensus 78 ~~vLEvgcGtG~Nf----kfy~~~p~~svt~lDpn~~mee~~~ks~~E~k~~~~~~--fvva~-ge~l~~l~d~s~DtVV 150 (252)
T KOG4300|consen 78 GDVLEVGCGTGANF----KFYPWKPINSVTCLDPNEKMEEIADKSAAEKKPLQVER--FVVAD-GENLPQLADGSYDTVV 150 (252)
T ss_pred cceEEecccCCCCc----ccccCCCCceEEEeCCcHHHHHHHHHHHhhccCcceEE--EEeec-hhcCcccccCCeeeEE
Confidence 46899999999885 3333 146799999999999999988876542221110 00111 12343 3578999999
Q ss_pred ecccccCCCCHHHHHHHHHHHHhccCCeEEEEcCCC-CCchHHHHHHHHHHH
Q 015771 110 ASYVLGEVPSLQDRITIVRQLWDLTRDVLVLVEPGT-PQGSSIISQMRSHIL 160 (400)
Q Consensus 110 as~~L~eL~~~~~r~~~i~~Lw~~~gG~LVlVE~Gt-p~Gf~~I~~aR~~lL 160 (400)
++++|....++...+.-++++++ |||.++++|++. +-|| +...-|..+
T Consensus 151 ~TlvLCSve~~~k~L~e~~rlLR-pgG~iifiEHva~~y~~--~n~i~q~v~ 199 (252)
T KOG4300|consen 151 CTLVLCSVEDPVKQLNEVRRLLR-PGGRIIFIEHVAGEYGF--WNRILQQVA 199 (252)
T ss_pred EEEEEeccCCHHHHHHHHHHhcC-CCcEEEEEecccccchH--HHHHHHHHh
Confidence 99999999888888888999986 899999999975 3344 555555544
|
|
| >PRK08317 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.05 E-value=7.9e-09 Score=96.37 Aligned_cols=115 Identities=15% Similarity=0.195 Sum_probs=80.4
Q ss_pred HHHHCCCCCCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCC-CCCCceeechhhhHhhhhccc
Q 015771 22 FARRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGP-KDLPLIHSYNSIQALNKDISK 100 (400)
Q Consensus 22 l~~rlp~~~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~-~~~~~~~~~~~~~~l~~~l~~ 100 (400)
+...+....+.+|||+|||+|..+..++..++ ...+++++|.|+.+++.++...... .++.+... ++. ..+.
T Consensus 11 ~~~~~~~~~~~~vLdiG~G~G~~~~~~a~~~~-~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~-----d~~-~~~~ 83 (241)
T PRK08317 11 TFELLAVQPGDRVLDVGCGPGNDARELARRVG-PEGRVVGIDRSEAMLALAKERAAGLGPNVEFVRG-----DAD-GLPF 83 (241)
T ss_pred HHHHcCCCCCCEEEEeCCCCCHHHHHHHHhcC-CCcEEEEEeCCHHHHHHHHHHhhCCCCceEEEec-----ccc-cCCC
Confidence 33333333457999999999999988887763 2468999999999999998873221 12222211 111 1223
Q ss_pred CCCcccEEeecccccCCCCHHHHHHHHHHHHhccCCeEEEEcCC
Q 015771 101 SEREHDLVIASYVLGEVPSLQDRITIVRQLWDLTRDVLVLVEPG 144 (400)
Q Consensus 101 ~~~~~DLVias~~L~eL~~~~~r~~~i~~Lw~~~gG~LVlVE~G 144 (400)
..+.||+|++.++++++++...-...+.++++ +||.|+++++.
T Consensus 84 ~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~L~-~gG~l~~~~~~ 126 (241)
T PRK08317 84 PDGSFDAVRSDRVLQHLEDPARALAEIARVLR-PGGRVVVLDTD 126 (241)
T ss_pred CCCCceEEEEechhhccCCHHHHHHHHHHHhc-CCcEEEEEecC
Confidence 45689999999999999877665555666664 79999999874
|
|
| >PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.05 E-value=4.4e-09 Score=98.45 Aligned_cols=111 Identities=20% Similarity=0.306 Sum_probs=79.2
Q ss_pred CCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCC---CCCceeechhhhHhhhhcccCCCccc
Q 015771 30 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK---DLPLIHSYNSIQALNKDISKSEREHD 106 (400)
Q Consensus 30 ~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~---~~~~~~~~~~~~~l~~~l~~~~~~~D 106 (400)
.+.+|||+|||+|..+..+....+ ...+++++|.|+.|++.+++.+.... ++.++.. +.. ..+...+.||
T Consensus 51 ~~~~vldiG~G~G~~~~~l~~~~~-~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~-----d~~-~~~~~~~~~D 123 (239)
T PRK00216 51 PGDKVLDLACGTGDLAIALAKAVG-KTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQG-----DAE-ALPFPDNSFD 123 (239)
T ss_pred CCCeEEEeCCCCCHHHHHHHHHcC-CCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEec-----ccc-cCCCCCCCcc
Confidence 447999999999999888877765 24689999999999999998875421 1212111 111 1222346899
Q ss_pred EEeecccccCCCCHHHHHHHHHHHHhccCCeEEEEcCCCCCc
Q 015771 107 LVIASYVLGEVPSLQDRITIVRQLWDLTRDVLVLVEPGTPQG 148 (400)
Q Consensus 107 LVias~~L~eL~~~~~r~~~i~~Lw~~~gG~LVlVE~Gtp~G 148 (400)
+|+++++|+++++.......+..+++ +||.++++|...+..
T Consensus 124 ~I~~~~~l~~~~~~~~~l~~~~~~L~-~gG~li~~~~~~~~~ 164 (239)
T PRK00216 124 AVTIAFGLRNVPDIDKALREMYRVLK-PGGRLVILEFSKPTN 164 (239)
T ss_pred EEEEecccccCCCHHHHHHHHHHhcc-CCcEEEEEEecCCCc
Confidence 99999999998876555444455543 799999999876644
|
|
| >PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A | Back alignment and domain information |
|---|
Probab=99.02 E-value=8.4e-10 Score=90.25 Aligned_cols=93 Identities=23% Similarity=0.334 Sum_probs=64.5
Q ss_pred EEEEccchhHHHHHHHHHCCCC-CcEEEEEeCCHHHHHHHHHhhcCCC-CCCceeechhhhHhhhhcccCCCcccEEeec
Q 015771 34 VLDFGAGTGSAFWALREVWPRS-LEKVNLVEPSQSMQRAGQSLMQGPK-DLPLIHSYNSIQALNKDISKSEREHDLVIAS 111 (400)
Q Consensus 34 VLDvG~G~Gt~~~Al~~~~~~~-~~~v~~vD~S~~ml~~a~~ll~~~~-~~~~~~~~~~~~~l~~~l~~~~~~~DLVias 111 (400)
|||+|||+|..+.++.+.++.. ..+++++|.|++|++.+++...... ...++.. ++. .++...++||+|+++
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~~~~~~~~-----D~~-~l~~~~~~~D~v~~~ 74 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGPKVRFVQA-----DAR-DLPFSDGKFDLVVCS 74 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTTTSEEEES-----CTT-CHHHHSSSEEEEEE-
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCCceEEEEC-----CHh-HCcccCCCeeEEEEc
Confidence 7999999999999999888322 2799999999999999999885422 2222222 222 233345699999996
Q ss_pred cc-ccCCCCHHHHHHHHHHHHhc
Q 015771 112 YV-LGEVPSLQDRITIVRQLWDL 133 (400)
Q Consensus 112 ~~-L~eL~~~~~r~~~i~~Lw~~ 133 (400)
+. ++++. .++...+++++.+.
T Consensus 75 ~~~~~~~~-~~~~~~ll~~~~~~ 96 (101)
T PF13649_consen 75 GLSLHHLS-PEELEALLRRIARL 96 (101)
T ss_dssp TTGGGGSS-HHHHHHHHHHHHHT
T ss_pred CCccCCCC-HHHHHHHHHHHHHH
Confidence 55 88875 77888888888875
|
|
| >PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C | Back alignment and domain information |
|---|
Probab=99.02 E-value=3.1e-10 Score=99.45 Aligned_cols=98 Identities=27% Similarity=0.326 Sum_probs=69.8
Q ss_pred CCCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCCCCceeechhhhHhhhhcccCCCcccEE
Q 015771 29 FSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDISKSEREHDLV 108 (400)
Q Consensus 29 ~~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~~~~~~~~~~~~~l~~~l~~~~~~~DLV 108 (400)
..+.+|||+|||+|..+..+.+ + ..+++++|+|+.|++. . ........ .. ......++||+|
T Consensus 21 ~~~~~vLDiGcG~G~~~~~l~~-~---~~~~~g~D~~~~~~~~-----~---~~~~~~~~-----~~-~~~~~~~~fD~i 82 (161)
T PF13489_consen 21 KPGKRVLDIGCGTGSFLRALAK-R---GFEVTGVDISPQMIEK-----R---NVVFDNFD-----AQ-DPPFPDGSFDLI 82 (161)
T ss_dssp TTTSEEEEESSTTSHHHHHHHH-T---TSEEEEEESSHHHHHH-----T---TSEEEEEE-----CH-THHCHSSSEEEE
T ss_pred CCCCEEEEEcCCCCHHHHHHHH-h---CCEEEEEECCHHHHhh-----h---hhhhhhhh-----hh-hhhccccchhhH
Confidence 4568999999999998888754 2 2389999999999888 1 11111100 01 112245799999
Q ss_pred eecccccCCCCHHHHHHHHHHHHhc--cCCeEEEEcCCCCC
Q 015771 109 IASYVLGEVPSLQDRITIVRQLWDL--TRDVLVLVEPGTPQ 147 (400)
Q Consensus 109 ias~~L~eL~~~~~r~~~i~~Lw~~--~gG~LVlVE~Gtp~ 147 (400)
++.++|+++++ ...+++.+.+. |||++++..+....
T Consensus 83 ~~~~~l~~~~d---~~~~l~~l~~~LkpgG~l~~~~~~~~~ 120 (161)
T PF13489_consen 83 ICNDVLEHLPD---PEEFLKELSRLLKPGGYLVISDPNRDD 120 (161)
T ss_dssp EEESSGGGSSH---HHHHHHHHHHCEEEEEEEEEEEEBTTS
T ss_pred hhHHHHhhccc---HHHHHHHHHHhcCCCCEEEEEEcCCcc
Confidence 99999999985 44566666664 89999999987644
|
... |
| >PLN02490 MPBQ/MSBQ methyltransferase | Back alignment and domain information |
|---|
Probab=98.99 E-value=3.5e-09 Score=105.18 Aligned_cols=107 Identities=18% Similarity=0.201 Sum_probs=77.2
Q ss_pred CCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCCCCceeechhhhHhhhhcccCCCcccEEee
Q 015771 31 PAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDISKSEREHDLVIA 110 (400)
Q Consensus 31 p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~~~~~~~~~~~~~l~~~l~~~~~~~DLVia 110 (400)
..+|||+|||+|..+..+.+..+. .+|+++|.|++|++.+++.... .++.++.. +.. .++...+.||+|++
T Consensus 114 ~~~VLDLGcGtG~~~l~La~~~~~--~~VtgVD~S~~mL~~A~~k~~~-~~i~~i~g-----D~e-~lp~~~~sFDvVIs 184 (340)
T PLN02490 114 NLKVVDVGGGTGFTTLGIVKHVDA--KNVTILDQSPHQLAKAKQKEPL-KECKIIEG-----DAE-DLPFPTDYADRYVS 184 (340)
T ss_pred CCEEEEEecCCcHHHHHHHHHCCC--CEEEEEECCHHHHHHHHHhhhc-cCCeEEec-----cHH-hCCCCCCceeEEEE
Confidence 469999999999988887776642 5899999999999999886542 23333322 222 23334568999999
Q ss_pred cccccCCCCHHHHHHHHHHHHhccCCeEEEEcCCCCC
Q 015771 111 SYVLGEVPSLQDRITIVRQLWDLTRDVLVLVEPGTPQ 147 (400)
Q Consensus 111 s~~L~eL~~~~~r~~~i~~Lw~~~gG~LVlVE~Gtp~ 147 (400)
+++|+++++.....+-+.++++ +||.++++++..+.
T Consensus 185 ~~~L~~~~d~~~~L~e~~rvLk-PGG~LvIi~~~~p~ 220 (340)
T PLN02490 185 AGSIEYWPDPQRGIKEAYRVLK-IGGKACLIGPVHPT 220 (340)
T ss_pred cChhhhCCCHHHHHHHHHHhcC-CCcEEEEEEecCcc
Confidence 9999999876544444444443 79999999876554
|
|
| >TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases | Back alignment and domain information |
|---|
Probab=98.98 E-value=1.1e-08 Score=94.80 Aligned_cols=112 Identities=23% Similarity=0.309 Sum_probs=77.7
Q ss_pred CCCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCCCCceeechhhhHhhhhcccCCCcccEE
Q 015771 29 FSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDISKSEREHDLV 108 (400)
Q Consensus 29 ~~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~~~~~~~~~~~~~l~~~l~~~~~~~DLV 108 (400)
..+.+|||+|||+|..+..+....+. ..+++++|+|+.+++.++..+....++.++.. ++. ..+...++||+|
T Consensus 38 ~~~~~vldiG~G~G~~~~~~~~~~~~-~~~~~~iD~~~~~~~~~~~~~~~~~~i~~~~~-----d~~-~~~~~~~~~D~i 110 (223)
T TIGR01934 38 FKGQKVLDVACGTGDLAIELAKSAPD-RGKVTGVDFSSEMLEVAKKKSELPLNIEFIQA-----DAE-ALPFEDNSFDAV 110 (223)
T ss_pred CCCCeEEEeCCCCChhHHHHHHhcCC-CceEEEEECCHHHHHHHHHHhccCCCceEEec-----chh-cCCCCCCcEEEE
Confidence 35689999999999998888777652 35899999999999999887652112222221 122 122234689999
Q ss_pred eecccccCCCCHHHHHHHHHHHHhccCCeEEEEcCCCCCc
Q 015771 109 IASYVLGEVPSLQDRITIVRQLWDLTRDVLVLVEPGTPQG 148 (400)
Q Consensus 109 ias~~L~eL~~~~~r~~~i~~Lw~~~gG~LVlVE~Gtp~G 148 (400)
+++++++++++.....+.+..++ ++||.+++++...+..
T Consensus 111 ~~~~~~~~~~~~~~~l~~~~~~L-~~gG~l~~~~~~~~~~ 149 (223)
T TIGR01934 111 TIAFGLRNVTDIQKALREMYRVL-KPGGRLVILEFSKPAN 149 (223)
T ss_pred EEeeeeCCcccHHHHHHHHHHHc-CCCcEEEEEEecCCCc
Confidence 99999998876544334444444 2799999998866543
|
Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases. |
| >PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB | Back alignment and domain information |
|---|
Probab=98.97 E-value=2.7e-09 Score=97.62 Aligned_cols=116 Identities=20% Similarity=0.223 Sum_probs=79.0
Q ss_pred HHHHHHHHHCCCCCCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCCCCceeechhhhHhhh
Q 015771 17 LVTESFARRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNK 96 (400)
Q Consensus 17 ~vL~el~~rlp~~~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~~~~~~~~~~~~~l~~ 96 (400)
..-+++.+.++..++.++||+|||.|..+..++. ...+|+++|.|+..++.++++++.. +++. +.. ..++..
T Consensus 17 ~~hs~v~~a~~~~~~g~~LDlgcG~GRNalyLA~----~G~~VtAvD~s~~al~~l~~~a~~~-~l~i-~~~--~~Dl~~ 88 (192)
T PF03848_consen 17 PTHSEVLEAVPLLKPGKALDLGCGEGRNALYLAS----QGFDVTAVDISPVALEKLQRLAEEE-GLDI-RTR--VADLND 88 (192)
T ss_dssp ---HHHHHHCTTS-SSEEEEES-TTSHHHHHHHH----TT-EEEEEESSHHHHHHHHHHHHHT-T-TE-EEE--E-BGCC
T ss_pred CCcHHHHHHHhhcCCCcEEEcCCCCcHHHHHHHH----CCCeEEEEECCHHHHHHHHHHHhhc-Ccee-EEE--Eecchh
Confidence 3445666666677889999999999998887773 5678999999999999888877543 3332 211 123332
Q ss_pred hcccCCCcccEEeecccccCCCCHHHHHHHHHHHHhc--cCCeEEEEcC
Q 015771 97 DISKSEREHDLVIASYVLGEVPSLQDRITIVRQLWDL--TRDVLVLVEP 143 (400)
Q Consensus 97 ~l~~~~~~~DLVias~~L~eL~~~~~r~~~i~~Lw~~--~gG~LVlVE~ 143 (400)
.. ....||+|+++.++++|+ ...+..++++|-+. +||+++++..
T Consensus 89 -~~-~~~~yD~I~st~v~~fL~-~~~~~~i~~~m~~~~~pGG~~li~~~ 134 (192)
T PF03848_consen 89 -FD-FPEEYDFIVSTVVFMFLQ-RELRPQIIENMKAATKPGGYNLIVTF 134 (192)
T ss_dssp -BS--TTTEEEEEEESSGGGS--GGGHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred -cc-ccCCcCEEEEEEEeccCC-HHHHHHHHHHHHhhcCCcEEEEEEEe
Confidence 12 236799999999999996 66677788888664 7999888643
|
When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A. |
| >PLN02585 magnesium protoporphyrin IX methyltransferase | Back alignment and domain information |
|---|
Probab=98.97 E-value=1.2e-08 Score=100.58 Aligned_cols=102 Identities=21% Similarity=0.155 Sum_probs=68.5
Q ss_pred CCCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCC----CCCceeechhhhHhhhhcccCCCc
Q 015771 29 FSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK----DLPLIHSYNSIQALNKDISKSERE 104 (400)
Q Consensus 29 ~~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~----~~~~~~~~~~~~~l~~~l~~~~~~ 104 (400)
.++.+|||+|||+|..+..+.. ...+|+++|.|+.|++.|+..++... ....+. +...++ ....++
T Consensus 143 ~~~~~VLDlGcGtG~~a~~la~----~g~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~--f~~~Dl----~~l~~~ 212 (315)
T PLN02585 143 LAGVTVCDAGCGTGSLAIPLAL----EGAIVSASDISAAMVAEAERRAKEALAALPPEVLPK--FEANDL----ESLSGK 212 (315)
T ss_pred CCCCEEEEecCCCCHHHHHHHH----CCCEEEEEECCHHHHHHHHHHHHhcccccccccceE--EEEcch----hhcCCC
Confidence 3457999999999999888774 23589999999999999998875421 011110 001112 112468
Q ss_pred ccEEeecccccCCCCHHHHHHHHHHHHhccCCeEEEE
Q 015771 105 HDLVIASYVLGEVPSLQDRITIVRQLWDLTRDVLVLV 141 (400)
Q Consensus 105 ~DLVias~~L~eL~~~~~r~~~i~~Lw~~~gG~LVlV 141 (400)
||+|++..+|.+++. .....+++.+.+..+|.++|.
T Consensus 213 fD~Vv~~~vL~H~p~-~~~~~ll~~l~~l~~g~liIs 248 (315)
T PLN02585 213 YDTVTCLDVLIHYPQ-DKADGMIAHLASLAEKRLIIS 248 (315)
T ss_pred cCEEEEcCEEEecCH-HHHHHHHHHHHhhcCCEEEEE
Confidence 999999999988874 334466777765545555544
|
|
| >KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.94 E-value=2e-09 Score=101.24 Aligned_cols=117 Identities=20% Similarity=0.218 Sum_probs=74.9
Q ss_pred HHHHHHCCCCCC-------CeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCCCCceeechhhh
Q 015771 20 ESFARRLPGFSP-------AKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQ 92 (400)
Q Consensus 20 ~el~~rlp~~~p-------~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~~~~~~~~~~~~ 92 (400)
+.++++.+.+.| ++|||+|||+|.++..++. ....|++||.|+.|++.|+......+-... ...+.+.
T Consensus 72 d~~~~~v~~~~p~~k~~~g~~ilDvGCGgGLLSepLAr----lga~V~GID~s~~~V~vA~~h~~~dP~~~~-~~~y~l~ 146 (282)
T KOG1270|consen 72 DDLRNRVNNHAPGSKPLLGMKILDVGCGGGLLSEPLAR----LGAQVTGIDASDDMVEVANEHKKMDPVLEG-AIAYRLE 146 (282)
T ss_pred HHHHhcccccCCCccccCCceEEEeccCccccchhhHh----hCCeeEeecccHHHHHHHHHhhhcCchhcc-ccceeee
Confidence 455556544333 5699999999999888773 457999999999999999987332111000 0000011
Q ss_pred HhhhhcccCCCcccEEeecccccCCCCHHHHHHHHHHHHhccCCeEEEEc
Q 015771 93 ALNKDISKSEREHDLVIASYVLGEVPSLQDRITIVRQLWDLTRDVLVLVE 142 (400)
Q Consensus 93 ~l~~~l~~~~~~~DLVias~~L~eL~~~~~r~~~i~~Lw~~~gG~LVlVE 142 (400)
.....+....+.||.|+|+-+|.++.++.+-..-+-+++ +|+|.|+|-.
T Consensus 147 ~~~~~~E~~~~~fDaVvcsevleHV~dp~~~l~~l~~~l-kP~G~lfitt 195 (282)
T KOG1270|consen 147 YEDTDVEGLTGKFDAVVCSEVLEHVKDPQEFLNCLSALL-KPNGRLFITT 195 (282)
T ss_pred hhhcchhhcccccceeeeHHHHHHHhCHHHHHHHHHHHh-CCCCceEeee
Confidence 111222233456999999999999976654444333333 2899999874
|
|
| >PLN03075 nicotianamine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.94 E-value=1.1e-08 Score=99.35 Aligned_cols=123 Identities=15% Similarity=0.178 Sum_probs=82.6
Q ss_pred HHhHHHHHHHHHHHHHHCCCCCCCeEEEEccchh--HHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCC----C
Q 015771 9 LECLLFTLLVTESFARRLPGFSPAKVLDFGAGTG--SAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKD----L 82 (400)
Q Consensus 9 ~~~Ya~~~~vL~el~~rlp~~~p~~VLDvG~G~G--t~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~----~ 82 (400)
-.||-.+.+.=.++-..+..-.|.+|||+|||+| ++++.++..++. .+++++|.|++|++.|++.+....+ +
T Consensus 102 ~~nY~~L~~lE~~~L~~~~~~~p~~VldIGcGpgpltaiilaa~~~p~--~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV 179 (296)
T PLN03075 102 YNNYLKLSKLEFDLLSQHVNGVPTKVAFVGSGPLPLTSIVLAKHHLPT--TSFHNFDIDPSANDVARRLVSSDPDLSKRM 179 (296)
T ss_pred hHHHHHHHHHHHHHHHHhhcCCCCEEEEECCCCcHHHHHHHHHhcCCC--CEEEEEeCCHHHHHHHHHHhhhccCccCCc
Confidence 3566666554333333333337899999999999 777877777764 5899999999999999999954222 2
Q ss_pred CceeechhhhHhhhhcccCCCcccEEeecccccCCCCHHHHHHHHHHHHhc--cCCeEEEE
Q 015771 83 PLIHSYNSIQALNKDISKSEREHDLVIASYVLGEVPSLQDRITIVRQLWDL--TRDVLVLV 141 (400)
Q Consensus 83 ~~~~~~~~~~~l~~~l~~~~~~~DLVias~~L~eL~~~~~r~~~i~~Lw~~--~gG~LVlV 141 (400)
.+.. .++.. .....+.||+|++. +|..+. .....++++++++. +||.|++=
T Consensus 180 ~F~~-----~Da~~-~~~~l~~FDlVF~~-ALi~~d-k~~k~~vL~~l~~~LkPGG~Lvlr 232 (296)
T PLN03075 180 FFHT-----ADVMD-VTESLKEYDVVFLA-ALVGMD-KEEKVKVIEHLGKHMAPGALLMLR 232 (296)
T ss_pred EEEE-----Cchhh-cccccCCcCEEEEe-cccccc-cccHHHHHHHHHHhcCCCcEEEEe
Confidence 2221 12222 11123689999999 888773 34556677777764 78888854
|
|
| >PRK15068 tRNA mo(5)U34 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.92 E-value=9.4e-09 Score=101.79 Aligned_cols=106 Identities=21% Similarity=0.238 Sum_probs=72.1
Q ss_pred HCCCCCCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcC---CCCCCceeechhhhHhhhhcccC
Q 015771 25 RLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQG---PKDLPLIHSYNSIQALNKDISKS 101 (400)
Q Consensus 25 rlp~~~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~---~~~~~~~~~~~~~~~l~~~l~~~ 101 (400)
.++...+.+|||+|||+|..++.++...+ ..|+++|+|+.|+..++..... ..++.++.. ++. .++.
T Consensus 117 ~l~~l~g~~VLDIGCG~G~~~~~la~~g~---~~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~-----d~e-~lp~- 186 (322)
T PRK15068 117 HLSPLKGRTVLDVGCGNGYHMWRMLGAGA---KLVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPL-----GIE-QLPA- 186 (322)
T ss_pred hhCCCCCCEEEEeccCCcHHHHHHHHcCC---CEEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeC-----CHH-HCCC-
Confidence 44455678999999999999998886543 3699999999998754433221 112222221 122 2333
Q ss_pred CCcccEEeecccccCCCCHHHHHHHHHHHHhccCCeEEEE
Q 015771 102 EREHDLVIASYVLGEVPSLQDRITIVRQLWDLTRDVLVLV 141 (400)
Q Consensus 102 ~~~~DLVias~~L~eL~~~~~r~~~i~~Lw~~~gG~LVlV 141 (400)
.+.||+|++..+|+++.++.....-+.+.++ +||.|||-
T Consensus 187 ~~~FD~V~s~~vl~H~~dp~~~L~~l~~~Lk-pGG~lvl~ 225 (322)
T PRK15068 187 LKAFDTVFSMGVLYHRRSPLDHLKQLKDQLV-PGGELVLE 225 (322)
T ss_pred cCCcCEEEECChhhccCCHHHHHHHHHHhcC-CCcEEEEE
Confidence 5689999999999998876655555555553 79999874
|
|
| >PRK07580 Mg-protoporphyrin IX methyl transferase; Validated | Back alignment and domain information |
|---|
Probab=98.92 E-value=1.8e-08 Score=94.15 Aligned_cols=106 Identities=21% Similarity=0.182 Sum_probs=70.3
Q ss_pred CCCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCCCCceeechhhhHhhhhcccCCCcccEE
Q 015771 29 FSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDISKSEREHDLV 108 (400)
Q Consensus 29 ~~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~~~~~~~~~~~~~l~~~l~~~~~~~DLV 108 (400)
..+.+|||+|||+|..+..+++. ...|+++|.|+.|++.|++.+........+... ..+ ++...+.||+|
T Consensus 62 ~~~~~vLDvGcG~G~~~~~l~~~----~~~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~--~~d----~~~~~~~fD~v 131 (230)
T PRK07580 62 LTGLRILDAGCGVGSLSIPLARR----GAKVVASDISPQMVEEARERAPEAGLAGNITFE--VGD----LESLLGRFDTV 131 (230)
T ss_pred CCCCEEEEEeCCCCHHHHHHHHc----CCEEEEEECCHHHHHHHHHHHHhcCCccCcEEE--EcC----chhccCCcCEE
Confidence 34579999999999988877743 346999999999999999887543211111110 011 22234679999
Q ss_pred eecccccCCCCHHHHHHHHHHHHhc-cCCeEEEEcCCC
Q 015771 109 IASYVLGEVPSLQDRITIVRQLWDL-TRDVLVLVEPGT 145 (400)
Q Consensus 109 ias~~L~eL~~~~~r~~~i~~Lw~~-~gG~LVlVE~Gt 145 (400)
++..+|++++ ......+++.+.+. ++|.++...+.+
T Consensus 132 ~~~~~l~~~~-~~~~~~~l~~l~~~~~~~~~i~~~~~~ 168 (230)
T PRK07580 132 VCLDVLIHYP-QEDAARMLAHLASLTRGSLIFTFAPYT 168 (230)
T ss_pred EEcchhhcCC-HHHHHHHHHHHHhhcCCeEEEEECCcc
Confidence 9999998876 34455677777655 344555544433
|
|
| >TIGR00452 methyltransferase, putative | Back alignment and domain information |
|---|
Probab=98.91 E-value=9.2e-09 Score=101.26 Aligned_cols=110 Identities=16% Similarity=0.206 Sum_probs=73.0
Q ss_pred HHHHCCCCCCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHh---hcCCCCCCceeechhhhHhhhhc
Q 015771 22 FARRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSL---MQGPKDLPLIHSYNSIQALNKDI 98 (400)
Q Consensus 22 l~~rlp~~~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~l---l~~~~~~~~~~~~~~~~~l~~~l 98 (400)
+...+...++.+|||+|||+|..++.+.... ...|+++|+|+.|+..++.. +.......+... ++. .+
T Consensus 113 ~l~~l~~~~g~~VLDvGCG~G~~~~~~~~~g---~~~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~-----~ie-~l 183 (314)
T TIGR00452 113 VLPHLSPLKGRTILDVGCGSGYHMWRMLGHG---AKSLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPL-----GIE-QL 183 (314)
T ss_pred HHHhcCCCCCCEEEEeccCCcHHHHHHHHcC---CCEEEEEcCCHHHHHHHHHHHHHhccCCCeEEEEC-----CHH-HC
Confidence 4444455667899999999999988877542 34799999999998754332 221111111111 121 23
Q ss_pred ccCCCcccEEeecccccCCCCHHHHHHHHHHHHhccCCeEEEEc
Q 015771 99 SKSEREHDLVIASYVLGEVPSLQDRITIVRQLWDLTRDVLVLVE 142 (400)
Q Consensus 99 ~~~~~~~DLVias~~L~eL~~~~~r~~~i~~Lw~~~gG~LVlVE 142 (400)
+. ...||+|++..+|.+++++..-+..+.++++ +||.|||..
T Consensus 184 p~-~~~FD~V~s~gvL~H~~dp~~~L~el~r~Lk-pGG~Lvlet 225 (314)
T TIGR00452 184 HE-LYAFDTVFSMGVLYHRKSPLEHLKQLKHQLV-IKGELVLET 225 (314)
T ss_pred CC-CCCcCEEEEcchhhccCCHHHHHHHHHHhcC-CCCEEEEEE
Confidence 32 3479999999999999877665555556554 799999754
|
Known examples to date are restricted to the proteobacteria. |
| >smart00138 MeTrc Methyltransferase, chemotaxis proteins | Back alignment and domain information |
|---|
Probab=98.90 E-value=8.2e-09 Score=99.42 Aligned_cols=112 Identities=16% Similarity=0.161 Sum_probs=72.0
Q ss_pred CCCeEEEEccchhHH----HHHHHHHCCC---CCcEEEEEeCCHHHHHHHHHhhcCC---CCCC------c---------
Q 015771 30 SPAKVLDFGAGTGSA----FWALREVWPR---SLEKVNLVEPSQSMQRAGQSLMQGP---KDLP------L--------- 84 (400)
Q Consensus 30 ~p~~VLDvG~G~Gt~----~~Al~~~~~~---~~~~v~~vD~S~~ml~~a~~ll~~~---~~~~------~--------- 84 (400)
.+.+|+|+|||+|.- +..+.+.++. ...+|+++|+|+.|++.|+..+-.. .+++ +
T Consensus 99 ~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~~ 178 (264)
T smart00138 99 RRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKYR 178 (264)
T ss_pred CCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeEE
Confidence 457999999999953 3345555432 2358999999999999998754210 0111 0
Q ss_pred e------eechhhhHhhhhcccCCCcccEEeecccccCCCCHHHHHHHHHHHHhc--cCCeEEEEcC
Q 015771 85 I------HSYNSIQALNKDISKSEREHDLVIASYVLGEVPSLQDRITIVRQLWDL--TRDVLVLVEP 143 (400)
Q Consensus 85 ~------~~~~~~~~l~~~l~~~~~~~DLVias~~L~eL~~~~~r~~~i~~Lw~~--~gG~LVlVE~ 143 (400)
+ ...+...++.. .+.+.++||+|+|.++|++++ ...+..+++++.+. |||+|+|-..
T Consensus 179 v~~~ir~~V~F~~~dl~~-~~~~~~~fD~I~crnvl~yf~-~~~~~~~l~~l~~~L~pGG~L~lg~~ 243 (264)
T smart00138 179 VKPELKERVRFAKHNLLA-ESPPLGDFDLIFCRNVLIYFD-EPTQRKLLNRFAEALKPGGYLFLGHS 243 (264)
T ss_pred EChHHhCcCEEeeccCCC-CCCccCCCCEEEechhHHhCC-HHHHHHHHHHHHHHhCCCeEEEEECc
Confidence 0 00000112221 122357899999999999996 56677777777664 8999998644
|
Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues. |
| >PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.89 E-value=1.3e-08 Score=97.99 Aligned_cols=108 Identities=13% Similarity=0.168 Sum_probs=73.0
Q ss_pred CCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCCCCceeechhhhHhhhhcccCCCcccEEee
Q 015771 31 PAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDISKSEREHDLVIA 110 (400)
Q Consensus 31 p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~~~~~~~~~~~~~l~~~l~~~~~~~DLVia 110 (400)
..+|||+|||+|..+..++...+ ...+++++|.|+.|++.|++...... ...+.. ...++. .++...+.||+|++
T Consensus 78 g~~VLDiG~G~G~~~~~~a~~~g-~~~~v~gvD~s~~~l~~A~~~~~~~g-~~~v~~--~~~d~~-~l~~~~~~fD~Vi~ 152 (272)
T PRK11873 78 GETVLDLGSGGGFDCFLAARRVG-PTGKVIGVDMTPEMLAKARANARKAG-YTNVEF--RLGEIE-ALPVADNSVDVIIS 152 (272)
T ss_pred CCEEEEeCCCCCHHHHHHHHHhC-CCCEEEEECCCHHHHHHHHHHHHHcC-CCCEEE--EEcchh-hCCCCCCceeEEEE
Confidence 46999999999987766665554 23589999999999999998765432 111111 011222 23334568999999
Q ss_pred cccccCCCCHHHHHHHHHHHHhccCCeEEEEcCC
Q 015771 111 SYVLGEVPSLQDRITIVRQLWDLTRDVLVLVEPG 144 (400)
Q Consensus 111 s~~L~eL~~~~~r~~~i~~Lw~~~gG~LVlVE~G 144 (400)
..+++..++...-...+.++++ +||.|++++..
T Consensus 153 ~~v~~~~~d~~~~l~~~~r~Lk-pGG~l~i~~~~ 185 (272)
T PRK11873 153 NCVINLSPDKERVFKEAFRVLK-PGGRFAISDVV 185 (272)
T ss_pred cCcccCCCCHHHHHHHHHHHcC-CCcEEEEEEee
Confidence 9999988765443444444443 79999998753
|
|
| >smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes | Back alignment and domain information |
|---|
Probab=98.88 E-value=1.1e-08 Score=95.41 Aligned_cols=106 Identities=23% Similarity=0.233 Sum_probs=73.4
Q ss_pred CeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCCCCceeechhhhHhhhhcccCCCcccEEeec
Q 015771 32 AKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDISKSEREHDLVIAS 111 (400)
Q Consensus 32 ~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~~~~~~~~~~~~~l~~~l~~~~~~~DLVias 111 (400)
++|||+|||+|..+..+++.++ ..+++++|.|++|++.++..+........+... ..++... + ..++||+|++.
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~~--~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~--~~d~~~~-~-~~~~fD~I~~~ 74 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERHP--HLQLHGYTISPEQAEVGRERIRALGLQGRIRIF--YRDSAKD-P-FPDTYDLVFGF 74 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHCC--CCEEEEEECCHHHHHHHHHHHHhcCCCcceEEE--ecccccC-C-CCCCCCEeehH
Confidence 3799999999998888887765 258999999999999999887543211111110 1122111 2 23579999999
Q ss_pred ccccCCCCHHHHHHHHHHHHhccCCeEEEEcCC
Q 015771 112 YVLGEVPSLQDRITIVRQLWDLTRDVLVLVEPG 144 (400)
Q Consensus 112 ~~L~eL~~~~~r~~~i~~Lw~~~gG~LVlVE~G 144 (400)
.+++++++.......+.++++ |||.+++.+..
T Consensus 75 ~~l~~~~~~~~~l~~~~~~Lk-pgG~l~i~~~~ 106 (224)
T smart00828 75 EVIHHIKDKMDLFSNISRHLK-DGGHLVLADFI 106 (224)
T ss_pred HHHHhCCCHHHHHHHHHHHcC-CCCEEEEEEcc
Confidence 999999865544444555553 89999998863
|
|
| >PLN02336 phosphoethanolamine N-methyltransferase | Back alignment and domain information |
|---|
Probab=98.87 E-value=2.3e-08 Score=103.94 Aligned_cols=106 Identities=13% Similarity=0.134 Sum_probs=74.6
Q ss_pred CCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCC-CCCceeechhhhHhhhhcccCCCcccEE
Q 015771 30 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK-DLPLIHSYNSIQALNKDISKSEREHDLV 108 (400)
Q Consensus 30 ~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~-~~~~~~~~~~~~~l~~~l~~~~~~~DLV 108 (400)
.+.+|||+|||+|..+..++..++ .+++++|+|+.|++.|+....... .+.+.. .++. ..+.+.++||+|
T Consensus 266 ~~~~vLDiGcG~G~~~~~la~~~~---~~v~gvDiS~~~l~~A~~~~~~~~~~v~~~~-----~d~~-~~~~~~~~fD~I 336 (475)
T PLN02336 266 PGQKVLDVGCGIGGGDFYMAENFD---VHVVGIDLSVNMISFALERAIGRKCSVEFEV-----ADCT-KKTYPDNSFDVI 336 (475)
T ss_pred CCCEEEEEeccCCHHHHHHHHhcC---CEEEEEECCHHHHHHHHHHhhcCCCceEEEE-----cCcc-cCCCCCCCEEEE
Confidence 356999999999998887776553 489999999999999987664322 111211 1222 122345689999
Q ss_pred eecccccCCCCHHHHHHHHHHHHhccCCeEEEEcCCC
Q 015771 109 IASYVLGEVPSLQDRITIVRQLWDLTRDVLVLVEPGT 145 (400)
Q Consensus 109 ias~~L~eL~~~~~r~~~i~~Lw~~~gG~LVlVE~Gt 145 (400)
++..++.++++.......+.++++ |||.|+|.+...
T Consensus 337 ~s~~~l~h~~d~~~~l~~~~r~Lk-pgG~l~i~~~~~ 372 (475)
T PLN02336 337 YSRDTILHIQDKPALFRSFFKWLK-PGGKVLISDYCR 372 (475)
T ss_pred EECCcccccCCHHHHHHHHHHHcC-CCeEEEEEEecc
Confidence 999999999876554445555553 899999987643
|
|
| >PRK11088 rrmA 23S rRNA methyltransferase A; Provisional | Back alignment and domain information |
|---|
Probab=98.86 E-value=2.7e-08 Score=96.07 Aligned_cols=127 Identities=15% Similarity=0.202 Sum_probs=80.6
Q ss_pred hHHHHHHHHH-HHHHHCCCCCCCeEEEEccchhHHHHHHHHHCCCC-CcEEEEEeCCHHHHHHHHHhhcCCCCCCceeec
Q 015771 11 CLLFTLLVTE-SFARRLPGFSPAKVLDFGAGTGSAFWALREVWPRS-LEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSY 88 (400)
Q Consensus 11 ~Ya~~~~vL~-el~~rlp~~~p~~VLDvG~G~Gt~~~Al~~~~~~~-~~~v~~vD~S~~ml~~a~~ll~~~~~~~~~~~~ 88 (400)
.|..+...+. .+.+.++ ..+.+|||+|||+|..+..+.+..+.. ...++++|+|+.|++.|++... ++.+...
T Consensus 66 ~y~~l~~~i~~~l~~~l~-~~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~~---~~~~~~~- 140 (272)
T PRK11088 66 HYQPLRDAVANLLAERLD-EKATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRYP---QVTFCVA- 140 (272)
T ss_pred ChHHHHHHHHHHHHHhcC-CCCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhCC---CCeEEEe-
Confidence 4555555443 3333333 244789999999999988887766532 2479999999999999977543 2222221
Q ss_pred hhhhHhhhhcccCCCcccEEeecccccCCCCHHHHHHHHHHHHhccCCeEEEEcCCCCCchHHHHHHHHHH
Q 015771 89 NSIQALNKDISKSEREHDLVIASYVLGEVPSLQDRITIVRQLWDLTRDVLVLVEPGTPQGSSIISQMRSHI 159 (400)
Q Consensus 89 ~~~~~l~~~l~~~~~~~DLVias~~L~eL~~~~~r~~~i~~Lw~~~gG~LVlVE~Gtp~Gf~~I~~aR~~l 159 (400)
+.. .++...+.||+|++.++... ..-+.++++ +||.|+++.++... +.++|+.+
T Consensus 141 ----d~~-~lp~~~~sfD~I~~~~~~~~-------~~e~~rvLk-pgG~li~~~p~~~~----l~el~~~~ 194 (272)
T PRK11088 141 ----SSH-RLPFADQSLDAIIRIYAPCK-------AEELARVVK-PGGIVITVTPGPRH----LFELKGLI 194 (272)
T ss_pred ----ecc-cCCCcCCceeEEEEecCCCC-------HHHHHhhcc-CCCEEEEEeCCCcc----hHHHHHHh
Confidence 121 24445678999998765221 123445553 89999999887533 33456554
|
|
| >TIGR00138 gidB 16S rRNA methyltransferase GidB | Back alignment and domain information |
|---|
Probab=98.85 E-value=3.4e-08 Score=89.90 Aligned_cols=100 Identities=16% Similarity=0.241 Sum_probs=66.7
Q ss_pred CCCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCC--CCCceeechhhhHhhhhcccCCCccc
Q 015771 29 FSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK--DLPLIHSYNSIQALNKDISKSEREHD 106 (400)
Q Consensus 29 ~~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~--~~~~~~~~~~~~~l~~~l~~~~~~~D 106 (400)
..+.+|||+|||+|..+..++...+ ..+|+++|.|+.|++.++..++... ++.++.. ++.. +. ..++||
T Consensus 41 ~~~~~vLDiGcGtG~~s~~la~~~~--~~~V~~iD~s~~~~~~a~~~~~~~~~~~i~~i~~-----d~~~-~~-~~~~fD 111 (181)
T TIGR00138 41 LDGKKVIDIGSGAGFPGIPLAIARP--ELKLTLLESNHKKVAFLREVKAELGLNNVEIVNG-----RAED-FQ-HEEQFD 111 (181)
T ss_pred cCCCeEEEecCCCCccHHHHHHHCC--CCeEEEEeCcHHHHHHHHHHHHHhCCCCeEEEec-----chhh-cc-ccCCcc
Confidence 4568999999999988877766654 3579999999999999888775432 2222222 2221 21 246899
Q ss_pred EEeecccccCCCCHHHHHHHHHHHHhccCCeEEEEc
Q 015771 107 LVIASYVLGEVPSLQDRITIVRQLWDLTRDVLVLVE 142 (400)
Q Consensus 107 LVias~~L~eL~~~~~r~~~i~~Lw~~~gG~LVlVE 142 (400)
+|++.. +.. ...-.+.+.++++ +||.+++..
T Consensus 112 ~I~s~~-~~~---~~~~~~~~~~~Lk-pgG~lvi~~ 142 (181)
T TIGR00138 112 VITSRA-LAS---LNVLLELTLNLLK-VGGYFLAYK 142 (181)
T ss_pred EEEehh-hhC---HHHHHHHHHHhcC-CCCEEEEEc
Confidence 998865 433 3333444455553 799998774
|
GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA. |
| >TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase | Back alignment and domain information |
|---|
Probab=98.84 E-value=4.8e-08 Score=91.10 Aligned_cols=100 Identities=25% Similarity=0.266 Sum_probs=68.2
Q ss_pred CCCCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCC---CCCceeechhhhHhhhhcccCCCc
Q 015771 28 GFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK---DLPLIHSYNSIQALNKDISKSERE 104 (400)
Q Consensus 28 ~~~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~---~~~~~~~~~~~~~l~~~l~~~~~~ 104 (400)
.+.+.+|||+|||+|..+..++. ...+++++|.|++|+..|++.+.... ++.+.. .++.. ..++
T Consensus 53 ~~~~~~vLDiGcG~G~~~~~la~----~~~~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~-----~d~~~----~~~~ 119 (219)
T TIGR02021 53 PLKGKRVLDAGCGTGLLSIELAK----RGAIVKAVDISEQMVQMARNRAQGRDVAGNVEFEV-----NDLLS----LCGE 119 (219)
T ss_pred CCCCCEEEEEeCCCCHHHHHHHH----CCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEE-----CChhh----CCCC
Confidence 34568999999999998887764 23589999999999999998875431 122221 11211 1268
Q ss_pred ccEEeecccccCCCCHHHHHHHHHHHHhc-cCCeEEEE
Q 015771 105 HDLVIASYVLGEVPSLQDRITIVRQLWDL-TRDVLVLV 141 (400)
Q Consensus 105 ~DLVias~~L~eL~~~~~r~~~i~~Lw~~-~gG~LVlV 141 (400)
||+|++.+++.+++ ......++.++.+. .+|.++.+
T Consensus 120 fD~ii~~~~l~~~~-~~~~~~~l~~i~~~~~~~~~i~~ 156 (219)
T TIGR02021 120 FDIVVCMDVLIHYP-ASDMAKALGHLASLTKERVIFTF 156 (219)
T ss_pred cCEEEEhhHHHhCC-HHHHHHHHHHHHHHhCCCEEEEE
Confidence 99999999998886 44455677777654 34444443
|
This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM. |
| >PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.84 E-value=1.8e-08 Score=93.13 Aligned_cols=121 Identities=9% Similarity=0.021 Sum_probs=75.3
Q ss_pred CCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCC--CCCceeechhhhHhhhhcccCCCcccE
Q 015771 30 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK--DLPLIHSYNSIQALNKDISKSEREHDL 107 (400)
Q Consensus 30 ~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~--~~~~~~~~~~~~~l~~~l~~~~~~~DL 107 (400)
...+|||+|||+|..+..++..++. .+|++||.|+.|++.++..+.... ++.++.... ...+... ...+.||+
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~~~p~--~~v~gVD~s~~~i~~a~~~~~~~~~~~v~~~~~d~-~~~l~~~--~~~~~~D~ 114 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAKANPD--INFIGIEVHEPGVGKALKKIEEEGLTNLRLLCGDA-VEVLLDM--FPDGSLDR 114 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHHHCCC--ccEEEEEechHHHHHHHHHHHHcCCCCEEEEecCH-HHHHHHH--cCccccce
Confidence 4579999999999999998877753 579999999999999988775432 222222210 0112111 23567999
Q ss_pred EeecccccCCCCHH-----HHHHHHHHHHhc--cCCeEEEEcCCCCCchHHHHHHHHHH
Q 015771 108 VIASYVLGEVPSLQ-----DRITIVRQLWDL--TRDVLVLVEPGTPQGSSIISQMRSHI 159 (400)
Q Consensus 108 Vias~~L~eL~~~~-----~r~~~i~~Lw~~--~gG~LVlVE~Gtp~Gf~~I~~aR~~l 159 (400)
|++.+...+..... ....+++++++. +||.|+|+.+ ....+..+.+.+
T Consensus 115 V~~~~~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~~----~~~~~~~~~~~~ 169 (202)
T PRK00121 115 IYLNFPDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFATD----WEGYAEYMLEVL 169 (202)
T ss_pred EEEECCCCCCCccccccccCCHHHHHHHHHHcCCCCEEEEEcC----CHHHHHHHHHHH
Confidence 99877653322110 123455555543 8999999864 233344444443
|
|
| >PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed | Back alignment and domain information |
|---|
Probab=98.84 E-value=2.7e-08 Score=91.01 Aligned_cols=100 Identities=21% Similarity=0.276 Sum_probs=67.9
Q ss_pred CCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCC--CCCceeechhhhHhhhhcccCCCcccEE
Q 015771 31 PAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK--DLPLIHSYNSIQALNKDISKSEREHDLV 108 (400)
Q Consensus 31 p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~--~~~~~~~~~~~~~l~~~l~~~~~~~DLV 108 (400)
+.+|||+|||+|..+++++..++ ..+|+++|.|+.|++.|++.++... ++.++.. +.. .+.. .++||+|
T Consensus 46 g~~VLDiGcGtG~~al~la~~~~--~~~V~giD~s~~~l~~A~~~~~~~~l~~i~~~~~-----d~~-~~~~-~~~fDlV 116 (187)
T PRK00107 46 GERVLDVGSGAGFPGIPLAIARP--ELKVTLVDSLGKKIAFLREVAAELGLKNVTVVHG-----RAE-EFGQ-EEKFDVV 116 (187)
T ss_pred CCeEEEEcCCCCHHHHHHHHHCC--CCeEEEEeCcHHHHHHHHHHHHHcCCCCEEEEec-----cHh-hCCC-CCCccEE
Confidence 57999999999998888777665 4689999999999999998876542 2222221 222 1222 5689999
Q ss_pred eecccccCCCCHHHHHHHHHHHHhccCCeEEEEcCC
Q 015771 109 IASYVLGEVPSLQDRITIVRQLWDLTRDVLVLVEPG 144 (400)
Q Consensus 109 ias~~L~eL~~~~~r~~~i~~Lw~~~gG~LVlVE~G 144 (400)
++... .+...-...+.++++ +||.+++++..
T Consensus 117 ~~~~~----~~~~~~l~~~~~~Lk-pGG~lv~~~~~ 147 (187)
T PRK00107 117 TSRAV----ASLSDLVELCLPLLK-PGGRFLALKGR 147 (187)
T ss_pred EEccc----cCHHHHHHHHHHhcC-CCeEEEEEeCC
Confidence 98652 223333333444443 89999999754
|
|
| >PLN02336 phosphoethanolamine N-methyltransferase | Back alignment and domain information |
|---|
Probab=98.83 E-value=2.2e-08 Score=104.08 Aligned_cols=113 Identities=17% Similarity=0.271 Sum_probs=77.4
Q ss_pred HHHHCCCCCCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCCCCceeechhhhHhh-hhccc
Q 015771 22 FARRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALN-KDISK 100 (400)
Q Consensus 22 l~~rlp~~~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~~~~~~~~~~~~~l~-~~l~~ 100 (400)
+...++.....+|||+|||+|..+..+++. ..+++++|.|+.|++.++.+.....++.++.. ++. ..++.
T Consensus 29 il~~l~~~~~~~vLDlGcG~G~~~~~la~~----~~~v~giD~s~~~l~~a~~~~~~~~~i~~~~~-----d~~~~~~~~ 99 (475)
T PLN02336 29 ILSLLPPYEGKSVLELGAGIGRFTGELAKK----AGQVIALDFIESVIKKNESINGHYKNVKFMCA-----DVTSPDLNI 99 (475)
T ss_pred HHhhcCccCCCEEEEeCCCcCHHHHHHHhh----CCEEEEEeCCHHHHHHHHHHhccCCceEEEEe-----cccccccCC
Confidence 334444444579999999999999888854 34899999999999987764432223333222 121 12233
Q ss_pred CCCcccEEeecccccCCCCHHHHHHHHHHHHhc--cCCeEEEEcCC
Q 015771 101 SEREHDLVIASYVLGEVPSLQDRITIVRQLWDL--TRDVLVLVEPG 144 (400)
Q Consensus 101 ~~~~~DLVias~~L~eL~~~~~r~~~i~~Lw~~--~gG~LVlVE~G 144 (400)
+.++||+|++.++|+++++ .+...+++++.+. +||.|++.|..
T Consensus 100 ~~~~fD~I~~~~~l~~l~~-~~~~~~l~~~~r~Lk~gG~l~~~d~~ 144 (475)
T PLN02336 100 SDGSVDLIFSNWLLMYLSD-KEVENLAERMVKWLKVGGYIFFRESC 144 (475)
T ss_pred CCCCEEEEehhhhHHhCCH-HHHHHHHHHHHHhcCCCeEEEEEecc
Confidence 4578999999999999974 4455666666553 89999998753
|
|
| >TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit | Back alignment and domain information |
|---|
Probab=98.79 E-value=7.6e-08 Score=80.58 Aligned_cols=101 Identities=20% Similarity=0.180 Sum_probs=65.5
Q ss_pred CCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCCCCceeechhhhHhhhhcccCCCcccEEe
Q 015771 30 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDISKSEREHDLVI 109 (400)
Q Consensus 30 ~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~~~~~~~~~~~~~l~~~l~~~~~~~DLVi 109 (400)
...+|||+|||+|..++.++..++. .+|+++|.|+.|++.++..++... ...+... ..+....++....+||+|+
T Consensus 19 ~~~~vldlG~G~G~~~~~l~~~~~~--~~v~~vD~s~~~~~~a~~~~~~~~-~~~~~~~--~~~~~~~~~~~~~~~D~v~ 93 (124)
T TIGR02469 19 PGDVLWDIGAGSGSITIEAARLVPN--GRVYAIERNPEALRLIERNARRFG-VSNIVIV--EGDAPEALEDSLPEPDRVF 93 (124)
T ss_pred CCCEEEEeCCCCCHHHHHHHHHCCC--ceEEEEcCCHHHHHHHHHHHHHhC-CCceEEE--eccccccChhhcCCCCEEE
Confidence 3469999999999999999888763 689999999999999988775432 1111110 0111111111235899999
Q ss_pred ecccccCCCCHHHHHHHHHHHHhc--cCCeEEEE
Q 015771 110 ASYVLGEVPSLQDRITIVRQLWDL--TRDVLVLV 141 (400)
Q Consensus 110 as~~L~eL~~~~~r~~~i~~Lw~~--~gG~LVlV 141 (400)
+......+ ..+++.+.+. +||.|++-
T Consensus 94 ~~~~~~~~------~~~l~~~~~~Lk~gG~li~~ 121 (124)
T TIGR02469 94 IGGSGGLL------QEILEAIWRRLRPGGRIVLN 121 (124)
T ss_pred ECCcchhH------HHHHHHHHHHcCCCCEEEEE
Confidence 97654322 2444444442 79998864
|
This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL. |
| >TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase | Back alignment and domain information |
|---|
Probab=98.78 E-value=1e-07 Score=88.75 Aligned_cols=106 Identities=20% Similarity=0.198 Sum_probs=73.3
Q ss_pred CCCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCC--CCceeechhhhHhhhhcccCCCccc
Q 015771 29 FSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKD--LPLIHSYNSIQALNKDISKSEREHD 106 (400)
Q Consensus 29 ~~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~--~~~~~~~~~~~~l~~~l~~~~~~~D 106 (400)
.++.+|||+|||+|..+..+... ..+++++|.|+.|++.++..+..... +.+... +.........++||
T Consensus 44 ~~~~~vLdlG~G~G~~~~~l~~~----~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~-----d~~~~~~~~~~~~D 114 (224)
T TIGR01983 44 LFGLRVLDVGCGGGLLSEPLARL----GANVTGIDASEENIEVAKLHAKKDPLLKIEYRCT-----SVEDLAEKGAKSFD 114 (224)
T ss_pred CCCCeEEEECCCCCHHHHHHHhc----CCeEEEEeCCHHHHHHHHHHHHHcCCCceEEEeC-----CHHHhhcCCCCCcc
Confidence 45789999999999988776643 24699999999999999887654321 211111 11111111236899
Q ss_pred EEeecccccCCCCHHHHHHHHHHHHhccCCeEEEEcCC
Q 015771 107 LVIASYVLGEVPSLQDRITIVRQLWDLTRDVLVLVEPG 144 (400)
Q Consensus 107 LVias~~L~eL~~~~~r~~~i~~Lw~~~gG~LVlVE~G 144 (400)
+|+++++|+++.+.......+.++++ +||.+++....
T Consensus 115 ~i~~~~~l~~~~~~~~~l~~~~~~L~-~gG~l~i~~~~ 151 (224)
T TIGR01983 115 VVTCMEVLEHVPDPQAFIRACAQLLK-PGGILFFSTIN 151 (224)
T ss_pred EEEehhHHHhCCCHHHHHHHHHHhcC-CCcEEEEEecC
Confidence 99999999999877655555555553 79998887664
|
This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase. |
| >PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional | Back alignment and domain information |
|---|
Probab=98.77 E-value=7.6e-08 Score=90.46 Aligned_cols=114 Identities=13% Similarity=0.142 Sum_probs=76.9
Q ss_pred HHHHHCCCCCCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCC-CCceeechhhhHhhhhcc
Q 015771 21 SFARRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKD-LPLIHSYNSIQALNKDIS 99 (400)
Q Consensus 21 el~~rlp~~~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~-~~~~~~~~~~~~l~~~l~ 99 (400)
.+...+......+|||+|||+|..+..+... ..+++++|.|+.+++.++..+..... +.+... +......
T Consensus 39 ~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~----~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~~~ 109 (233)
T PRK05134 39 YIREHAGGLFGKRVLDVGCGGGILSESMARL----GADVTGIDASEENIEVARLHALESGLKIDYRQT-----TAEELAA 109 (233)
T ss_pred HHHHhccCCCCCeEEEeCCCCCHHHHHHHHc----CCeEEEEcCCHHHHHHHHHHHHHcCCceEEEec-----CHHHhhh
Confidence 3343333445679999999999988776642 35799999999999998877643221 111111 1111111
Q ss_pred cCCCcccEEeecccccCCCCHHHHHHHHHHHHhccCCeEEEEcCC
Q 015771 100 KSEREHDLVIASYVLGEVPSLQDRITIVRQLWDLTRDVLVLVEPG 144 (400)
Q Consensus 100 ~~~~~~DLVias~~L~eL~~~~~r~~~i~~Lw~~~gG~LVlVE~G 144 (400)
...++||+|++++++..+++....+..+.++++ +||.+++..++
T Consensus 110 ~~~~~fD~Ii~~~~l~~~~~~~~~l~~~~~~L~-~gG~l~v~~~~ 153 (233)
T PRK05134 110 EHPGQFDVVTCMEMLEHVPDPASFVRACAKLVK-PGGLVFFSTLN 153 (233)
T ss_pred hcCCCccEEEEhhHhhccCCHHHHHHHHHHHcC-CCcEEEEEecC
Confidence 234689999999999999877665556666653 79999988764
|
|
| >KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.77 E-value=1.3e-07 Score=88.79 Aligned_cols=139 Identities=15% Similarity=0.158 Sum_probs=92.0
Q ss_pred HHHHHHHhHHHHHHHHHHHH----HH---------CCCCCCCeEEEEccchhHHHHHHHHHCC----CCCcEEEEEeCCH
Q 015771 4 LLMLLLECLLFTLLVTESFA----RR---------LPGFSPAKVLDFGAGTGSAFWALREVWP----RSLEKVNLVEPSQ 66 (400)
Q Consensus 4 l~~~~~~~Ya~~~~vL~el~----~r---------lp~~~p~~VLDvG~G~Gt~~~Al~~~~~----~~~~~v~~vD~S~ 66 (400)
++.....+++..|.++..+- +| +......++||++||||-.++.+.+..+ ....+|+++|+|+
T Consensus 61 ~V~~vF~~vA~~YD~mND~mSlGiHRlWKd~~v~~L~p~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp 140 (296)
T KOG1540|consen 61 LVHHVFESVAKKYDIMNDAMSLGIHRLWKDMFVSKLGPGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINP 140 (296)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcchhHHHHHHhhhccCCCCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCH
Confidence 34455566666666655432 22 2223458999999999999888776553 2337899999999
Q ss_pred HHHHHHHHhhcCCCCCCceeechhhhHhhhhcccCCCcccEEeecccccCCCCHHHHHHHHHHHHh--ccCCeEEEEcCC
Q 015771 67 SMQRAGQSLMQGPKDLPLIHSYNSIQALNKDISKSEREHDLVIASYVLGEVPSLQDRITIVRQLWD--LTRDVLVLVEPG 144 (400)
Q Consensus 67 ~ml~~a~~ll~~~~~~~~~~~~~~~~~l~~~l~~~~~~~DLVias~~L~eL~~~~~r~~~i~~Lw~--~~gG~LVlVE~G 144 (400)
+|++.|++.....+--.- ....++..-...+|++...||+.+++|.+...++... .+++..+ +|||.+.+.|..
T Consensus 141 ~mL~vgkqRa~~~~l~~~-~~~~w~~~dAE~LpFdd~s~D~yTiafGIRN~th~~k---~l~EAYRVLKpGGrf~cLeFs 216 (296)
T KOG1540|consen 141 HMLAVGKQRAKKRPLKAS-SRVEWVEGDAEDLPFDDDSFDAYTIAFGIRNVTHIQK---ALREAYRVLKPGGRFSCLEFS 216 (296)
T ss_pred HHHHHHHHHHhhcCCCcC-CceEEEeCCcccCCCCCCcceeEEEecceecCCCHHH---HHHHHHHhcCCCcEEEEEEcc
Confidence 999999998754211110 0011111113356778899999999999999886543 4444444 389999999875
Q ss_pred CC
Q 015771 145 TP 146 (400)
Q Consensus 145 tp 146 (400)
.-
T Consensus 217 kv 218 (296)
T KOG1540|consen 217 KV 218 (296)
T ss_pred cc
Confidence 43
|
|
| >TIGR00537 hemK_rel_arch HemK-related putative methylase | Back alignment and domain information |
|---|
Probab=98.77 E-value=1e-07 Score=86.16 Aligned_cols=108 Identities=14% Similarity=0.101 Sum_probs=70.7
Q ss_pred CCCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCC-CCCceeechhhhHhhhhcccCCCcccE
Q 015771 29 FSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK-DLPLIHSYNSIQALNKDISKSEREHDL 107 (400)
Q Consensus 29 ~~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~-~~~~~~~~~~~~~l~~~l~~~~~~~DL 107 (400)
.++.+|||+|||+|..+..++... .+++++|.|+.|++.++..+.... +...+. .++.. ...++||+
T Consensus 18 ~~~~~vLdlG~G~G~~~~~l~~~~----~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~-----~d~~~---~~~~~fD~ 85 (179)
T TIGR00537 18 LKPDDVLEIGAGTGLVAIRLKGKG----KCILTTDINPFAVKELRENAKLNNVGLDVVM-----TDLFK---GVRGKFDV 85 (179)
T ss_pred cCCCeEEEeCCChhHHHHHHHhcC----CEEEEEECCHHHHHHHHHHHHHcCCceEEEE-----ccccc---ccCCcccE
Confidence 345789999999999988877543 289999999999999998875432 111111 11111 12358999
Q ss_pred EeecccccCCCCHHH------------------HHHHHHHHHh--ccCCeEEEEcCCCCCc
Q 015771 108 VIASYVLGEVPSLQD------------------RITIVRQLWD--LTRDVLVLVEPGTPQG 148 (400)
Q Consensus 108 Vias~~L~eL~~~~~------------------r~~~i~~Lw~--~~gG~LVlVE~Gtp~G 148 (400)
|+++..+++.+.... ...+++++.+ ++||.++++.++....
T Consensus 86 Vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~~~~~ 146 (179)
T TIGR00537 86 ILFNPPYLPLEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSSLNGE 146 (179)
T ss_pred EEECCCCCCCcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEeccCCh
Confidence 999887766543211 1234444333 2799999998866543
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes. |
| >PRK06922 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.75 E-value=1.5e-07 Score=99.70 Aligned_cols=106 Identities=14% Similarity=0.163 Sum_probs=74.8
Q ss_pred CCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCC-CCCceeechhhhHhhhhcc--cCCCccc
Q 015771 30 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK-DLPLIHSYNSIQALNKDIS--KSEREHD 106 (400)
Q Consensus 30 ~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~-~~~~~~~~~~~~~l~~~l~--~~~~~~D 106 (400)
.+.+|||+|||+|..+.+++..++ ..+++++|.|+.|++.|+....... +...+.. +.. .++ ...++||
T Consensus 418 ~g~rVLDIGCGTG~ls~~LA~~~P--~~kVtGIDIS~~MLe~Ararl~~~g~~ie~I~g-----Da~-dLp~~fedeSFD 489 (677)
T PRK06922 418 KGDTIVDVGAGGGVMLDMIEEETE--DKRIYGIDISENVIDTLKKKKQNEGRSWNVIKG-----DAI-NLSSSFEKESVD 489 (677)
T ss_pred CCCEEEEeCCCCCHHHHHHHHhCC--CCEEEEEECCHHHHHHHHHHhhhcCCCeEEEEc-----chH-hCccccCCCCEE
Confidence 458999999999998888877665 3689999999999999988764321 1111211 111 122 3456899
Q ss_pred EEeecccccCCCC----------HHHHHHHHHHHHhc--cCCeEEEEcC
Q 015771 107 LVIASYVLGEVPS----------LQDRITIVRQLWDL--TRDVLVLVEP 143 (400)
Q Consensus 107 LVias~~L~eL~~----------~~~r~~~i~~Lw~~--~gG~LVlVE~ 143 (400)
+|+++++++++.+ ......+++++.+. |||.++|+|.
T Consensus 490 vVVsn~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D~ 538 (677)
T PRK06922 490 TIVYSSILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRDG 538 (677)
T ss_pred EEEEchHHHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEeC
Confidence 9999999887531 23455667766653 8999999986
|
|
| >PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.75 E-value=1.3e-07 Score=95.77 Aligned_cols=115 Identities=19% Similarity=0.191 Sum_probs=77.0
Q ss_pred HHHHHHHHCCCCCCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCCCCceeechhhhHhhhh
Q 015771 18 VTESFARRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKD 97 (400)
Q Consensus 18 vL~el~~rlp~~~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~~~~~~~~~~~~~l~~~ 97 (400)
.+..+.+++.-..+.+|||+|||+|..+..++...+ .+|+++|.|++|++.|++.+... .+.+. ..+.. .
T Consensus 155 k~~~l~~~l~l~~g~rVLDIGcG~G~~a~~la~~~g---~~V~giDlS~~~l~~A~~~~~~l-~v~~~-----~~D~~-~ 224 (383)
T PRK11705 155 KLDLICRKLQLKPGMRVLDIGCGWGGLARYAAEHYG---VSVVGVTISAEQQKLAQERCAGL-PVEIR-----LQDYR-D 224 (383)
T ss_pred HHHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHCC---CEEEEEeCCHHHHHHHHHHhccC-eEEEE-----ECchh-h
Confidence 344555555433457999999999999887776543 48999999999999999887532 11111 11121 1
Q ss_pred cccCCCcccEEeecccccCCCCHHHHHHHHHHHHh--ccCCeEEEEcCCCC
Q 015771 98 ISKSEREHDLVIASYVLGEVPSLQDRITIVRQLWD--LTRDVLVLVEPGTP 146 (400)
Q Consensus 98 l~~~~~~~DLVias~~L~eL~~~~~r~~~i~~Lw~--~~gG~LVlVE~Gtp 146 (400)
..++||+|++..++.++.. .....+++.+.+ +|||.+++...+.+
T Consensus 225 ---l~~~fD~Ivs~~~~ehvg~-~~~~~~l~~i~r~LkpGG~lvl~~i~~~ 271 (383)
T PRK11705 225 ---LNGQFDRIVSVGMFEHVGP-KNYRTYFEVVRRCLKPDGLFLLHTIGSN 271 (383)
T ss_pred ---cCCCCCEEEEeCchhhCCh-HHHHHHHHHHHHHcCCCcEEEEEEccCC
Confidence 1368999999999988853 223344444443 38999999876544
|
|
| >PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.73 E-value=1.4e-07 Score=87.45 Aligned_cols=98 Identities=21% Similarity=0.252 Sum_probs=67.4
Q ss_pred CCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCC---CCceeechhhhHhhhhcccCCCcccE
Q 015771 31 PAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKD---LPLIHSYNSIQALNKDISKSEREHDL 107 (400)
Q Consensus 31 p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~---~~~~~~~~~~~~l~~~l~~~~~~~DL 107 (400)
..+|||+|||+|..+..+++..+ ...+|+++|.|++|++.|++.+..... +.++. .+....++ ...+||+
T Consensus 73 ~~~VLDiG~GsG~~~~~la~~~~-~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~-----~d~~~~~~-~~~~fD~ 145 (205)
T PRK13944 73 GMKILEVGTGSGYQAAVCAEAIE-RRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYH-----GDGKRGLE-KHAPFDA 145 (205)
T ss_pred CCEEEEECcCccHHHHHHHHhcC-CCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEE-----CCcccCCc-cCCCccE
Confidence 36999999999998877776664 235899999999999999987764321 11221 12222222 3468999
Q ss_pred EeecccccCCCCHHHHHHHHHHHHhccCCeEEEEc
Q 015771 108 VIASYVLGEVPSLQDRITIVRQLWDLTRDVLVLVE 142 (400)
Q Consensus 108 Vias~~L~eL~~~~~r~~~i~~Lw~~~gG~LVlVE 142 (400)
|++..++.+++. ++++. + ++||.|++.-
T Consensus 146 Ii~~~~~~~~~~-----~l~~~-L-~~gG~lvi~~ 173 (205)
T PRK13944 146 IIVTAAASTIPS-----ALVRQ-L-KDGGVLVIPV 173 (205)
T ss_pred EEEccCcchhhH-----HHHHh-c-CcCcEEEEEE
Confidence 999999887752 23333 3 3799998864
|
|
| >TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU | Back alignment and domain information |
|---|
Probab=98.72 E-value=2.3e-07 Score=91.12 Aligned_cols=104 Identities=15% Similarity=0.149 Sum_probs=72.8
Q ss_pred CCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCCCCceeechhhhHhhhhcccCCCcccEEee
Q 015771 31 PAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDISKSEREHDLVIA 110 (400)
Q Consensus 31 p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~~~~~~~~~~~~~l~~~l~~~~~~~DLVia 110 (400)
..+|||+|||+|..+.++.+.+|. .+++++|. +.|++.++..+....-...+... ..+... .+ ...+|+|++
T Consensus 150 ~~~vlDiG~G~G~~~~~~~~~~p~--~~~~~~D~-~~~~~~a~~~~~~~gl~~rv~~~--~~d~~~-~~--~~~~D~v~~ 221 (306)
T TIGR02716 150 VKKMIDVGGGIGDISAAMLKHFPE--LDSTILNL-PGAIDLVNENAAEKGVADRMRGI--AVDIYK-ES--YPEADAVLF 221 (306)
T ss_pred CCEEEEeCCchhHHHHHHHHHCCC--CEEEEEec-HHHHHHHHHHHHhCCccceEEEE--ecCccC-CC--CCCCCEEEe
Confidence 379999999999999999988873 57999997 78999998877643211111110 011111 11 124799999
Q ss_pred cccccCCCCHHHHHHHHHHHHhc--cCCeEEEEcC
Q 015771 111 SYVLGEVPSLQDRITIVRQLWDL--TRDVLVLVEP 143 (400)
Q Consensus 111 s~~L~eL~~~~~r~~~i~~Lw~~--~gG~LVlVE~ 143 (400)
+++|+..+ ......+++++.+. |||.|+|+|.
T Consensus 222 ~~~lh~~~-~~~~~~il~~~~~~L~pgG~l~i~d~ 255 (306)
T TIGR02716 222 CRILYSAN-EQLSTIMCKKAFDAMRSGGRLLILDM 255 (306)
T ss_pred EhhhhcCC-hHHHHHHHHHHHHhcCCCCEEEEEEe
Confidence 99999875 44456677777663 8999999986
|
Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d. |
| >KOG3010 consensus Methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.71 E-value=3e-08 Score=92.37 Aligned_cols=113 Identities=18% Similarity=0.190 Sum_probs=77.3
Q ss_pred HHHHHHHHHCCCCCCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCC-CCCceeechhhhHhh
Q 015771 17 LVTESFARRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK-DLPLIHSYNSIQALN 95 (400)
Q Consensus 17 ~vL~el~~rlp~~~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~-~~~~~~~~~~~~~l~ 95 (400)
..+..+..+-..- ..++|+|||+|.++..+++.+ .+|+++|.|++|+++|++...... +.+..-.. .++
T Consensus 22 dw~~~ia~~~~~h--~~a~DvG~G~Gqa~~~iae~~----k~VIatD~s~~mL~~a~k~~~~~y~~t~~~ms~---~~~- 91 (261)
T KOG3010|consen 22 DWFKKIASRTEGH--RLAWDVGTGNGQAARGIAEHY----KEVIATDVSEAMLKVAKKHPPVTYCHTPSTMSS---DEM- 91 (261)
T ss_pred HHHHHHHhhCCCc--ceEEEeccCCCcchHHHHHhh----hhheeecCCHHHHHHhhcCCCcccccCCccccc---ccc-
Confidence 3556666654332 489999999998888888765 479999999999999887654321 11110000 000
Q ss_pred hhcccCCCcccEEeecccccCCCCHHHHHHHHHHHHhccCCeEEE
Q 015771 96 KDISKSEREHDLVIASYVLGEVPSLQDRITIVRQLWDLTRDVLVL 140 (400)
Q Consensus 96 ~~l~~~~~~~DLVias~~L~eL~~~~~r~~~i~~Lw~~~gG~LVl 140 (400)
..+...+++.|||+++.++|+.. .+.-...+.++++++||.+.+
T Consensus 92 v~L~g~e~SVDlI~~Aqa~HWFd-le~fy~~~~rvLRk~Gg~iav 135 (261)
T KOG3010|consen 92 VDLLGGEESVDLITAAQAVHWFD-LERFYKEAYRVLRKDGGLIAV 135 (261)
T ss_pred ccccCCCcceeeehhhhhHHhhc-hHHHHHHHHHHcCCCCCEEEE
Confidence 11222367999999999999995 666677888899877775553
|
|
| >PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=98.68 E-value=3.1e-07 Score=83.62 Aligned_cols=101 Identities=19% Similarity=0.121 Sum_probs=66.1
Q ss_pred CCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCC--CCCceeechhhhHhhhhcccCCCcccE
Q 015771 30 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK--DLPLIHSYNSIQALNKDISKSEREHDL 107 (400)
Q Consensus 30 ~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~--~~~~~~~~~~~~~l~~~l~~~~~~~DL 107 (400)
.+.+|||+|||+|..+..++..++ ..+++++|.|+.|++.+++.+.... ++.++.. +.... ...+||+
T Consensus 31 ~~~~vLDiG~G~G~~~~~la~~~~--~~~v~~vD~s~~~~~~a~~n~~~~~~~~i~~~~~-----d~~~~---~~~~~D~ 100 (187)
T PRK08287 31 RAKHLIDVGAGTGSVSIEAALQFP--SLQVTAIERNPDALRLIKENRQRFGCGNIDIIPG-----EAPIE---LPGKADA 100 (187)
T ss_pred CCCEEEEECCcCCHHHHHHHHHCC--CCEEEEEECCHHHHHHHHHHHHHhCCCCeEEEec-----Cchhh---cCcCCCE
Confidence 457999999999999988887765 3689999999999999988775431 2211111 11111 2357999
Q ss_pred EeecccccCCCCHHHHHHHHHHHHhccCCeEEEEcCC
Q 015771 108 VIASYVLGEVPSLQDRITIVRQLWDLTRDVLVLVEPG 144 (400)
Q Consensus 108 Vias~~L~eL~~~~~r~~~i~~Lw~~~gG~LVlVE~G 144 (400)
|++..+...+ ..-...+.+++ ++||.+++....
T Consensus 101 v~~~~~~~~~---~~~l~~~~~~L-k~gG~lv~~~~~ 133 (187)
T PRK08287 101 IFIGGSGGNL---TAIIDWSLAHL-HPGGRLVLTFIL 133 (187)
T ss_pred EEECCCccCH---HHHHHHHHHhc-CCCeEEEEEEec
Confidence 9998765433 22222233333 279999886543
|
|
| >TIGR02081 metW methionine biosynthesis protein MetW | Back alignment and domain information |
|---|
Probab=98.66 E-value=3.1e-07 Score=84.14 Aligned_cols=104 Identities=21% Similarity=0.251 Sum_probs=69.0
Q ss_pred HHHHHHHCCCCCCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCCCCceeechhhhHhhhhc
Q 015771 19 TESFARRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDI 98 (400)
Q Consensus 19 L~el~~rlp~~~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~~~~~~~~~~~~~l~~~l 98 (400)
|.++.+.++ .+.+|||+|||+|..+.++.+.. ...++++|.|++|++.++.. ++..+... +...+
T Consensus 4 ~~~i~~~i~--~~~~iLDiGcG~G~~~~~l~~~~---~~~~~giD~s~~~i~~a~~~-----~~~~~~~d-----~~~~l 68 (194)
T TIGR02081 4 LESILNLIP--PGSRVLDLGCGDGELLALLRDEK---QVRGYGIEIDQDGVLACVAR-----GVNVIQGD-----LDEGL 68 (194)
T ss_pred HHHHHHhcC--CCCEEEEeCCCCCHHHHHHHhcc---CCcEEEEeCCHHHHHHHHHc-----CCeEEEEE-----hhhcc
Confidence 455555554 23699999999999887776433 24679999999999888641 23333221 22212
Q ss_pred -ccCCCcccEEeecccccCCCCHHHHHHHHHHHHhccCCeEEEE
Q 015771 99 -SKSEREHDLVIASYVLGEVPSLQDRITIVRQLWDLTRDVLVLV 141 (400)
Q Consensus 99 -~~~~~~~DLVias~~L~eL~~~~~r~~~i~~Lw~~~gG~LVlV 141 (400)
+...++||+|+++++|+++++. ..+++++.+ .++.+++.
T Consensus 69 ~~~~~~sfD~Vi~~~~l~~~~d~---~~~l~e~~r-~~~~~ii~ 108 (194)
T TIGR02081 69 EAFPDKSFDYVILSQTLQATRNP---EEILDEMLR-VGRHAIVS 108 (194)
T ss_pred cccCCCCcCEEEEhhHhHcCcCH---HHHHHHHHH-hCCeEEEE
Confidence 1235689999999999999754 356777776 45655544
|
This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized. |
| >TIGR03438 probable methyltransferase | Back alignment and domain information |
|---|
Probab=98.66 E-value=2.2e-07 Score=91.18 Aligned_cols=118 Identities=9% Similarity=0.176 Sum_probs=75.2
Q ss_pred HHHHHHHHHCCCCCCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCC-CCCCc--eeechhhhH
Q 015771 17 LVTESFARRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGP-KDLPL--IHSYNSIQA 93 (400)
Q Consensus 17 ~vL~el~~rlp~~~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~-~~~~~--~~~~~~~~~ 93 (400)
....+|...++ .+.+|||+|||+|..+..+.+.++. ..+|++||.|++|++.+...+... ..+.. +.. +
T Consensus 52 ~~~~~ia~~~~--~~~~iLELGcGtG~~t~~Ll~~l~~-~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~g-----D 123 (301)
T TIGR03438 52 RHADEIAAATG--AGCELVELGSGSSRKTRLLLDALRQ-PARYVPIDISADALKESAAALAADYPQLEVHGICA-----D 123 (301)
T ss_pred HHHHHHHHhhC--CCCeEEecCCCcchhHHHHHHhhcc-CCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEE-----c
Confidence 34445555543 2468999999999999888877642 468999999999999888776542 22221 221 2
Q ss_pred hhhhcccCC----CcccEEeecccccCCCCHHHHHHHHHHHHhc--cCCeEEEEcC
Q 015771 94 LNKDISKSE----REHDLVIASYVLGEVPSLQDRITIVRQLWDL--TRDVLVLVEP 143 (400)
Q Consensus 94 l~~~l~~~~----~~~DLVias~~L~eL~~~~~r~~~i~~Lw~~--~gG~LVlVE~ 143 (400)
+...++... ....+++++.+++.++ ..+...+++++.+. +||.|+|--.
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~~gs~~~~~~-~~e~~~~L~~i~~~L~pgG~~lig~d 178 (301)
T TIGR03438 124 FTQPLALPPEPAAGRRLGFFPGSTIGNFT-PEEAVAFLRRIRQLLGPGGGLLIGVD 178 (301)
T ss_pred ccchhhhhcccccCCeEEEEecccccCCC-HHHHHHHHHHHHHhcCCCCEEEEecc
Confidence 221111111 1233555667788885 66777778777764 7898886433
|
This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases |
| >TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family | Back alignment and domain information |
|---|
Probab=98.65 E-value=3.2e-07 Score=85.62 Aligned_cols=114 Identities=16% Similarity=-0.005 Sum_probs=73.1
Q ss_pred HHHHHHHHHCCCCCCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCC--------------CCC
Q 015771 17 LVTESFARRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGP--------------KDL 82 (400)
Q Consensus 17 ~vL~el~~rlp~~~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~--------------~~~ 82 (400)
..|.++..+++.-.+.+|||+|||.|..+..+++ ...+|++||.|+.+++.+.....-. .++
T Consensus 21 ~~l~~~~~~l~~~~~~rvLd~GCG~G~da~~LA~----~G~~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v 96 (213)
T TIGR03840 21 PLLVKHWPALGLPAGARVFVPLCGKSLDLAWLAE----QGHRVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNI 96 (213)
T ss_pred HHHHHHHHhhCCCCCCeEEEeCCCchhHHHHHHh----CCCeEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCce
Confidence 3455555554222346999999999988877773 5678999999999999753311100 001
Q ss_pred CceeechhhhHhhhhcc-cCCCcccEEeecccccCCCCHHHHHHHHHHHHhc--cCCeEEEE
Q 015771 83 PLIHSYNSIQALNKDIS-KSEREHDLVIASYVLGEVPSLQDRITIVRQLWDL--TRDVLVLV 141 (400)
Q Consensus 83 ~~~~~~~~~~~l~~~l~-~~~~~~DLVias~~L~eL~~~~~r~~~i~~Lw~~--~gG~LVlV 141 (400)
.++ ..++.. ++ ...++||+|+-..+++.++ +..|...+.++.+. |||.++++
T Consensus 97 ~~~-----~~D~~~-~~~~~~~~fD~i~D~~~~~~l~-~~~R~~~~~~l~~lLkpgG~~ll~ 151 (213)
T TIGR03840 97 EIF-----CGDFFA-LTAADLGPVDAVYDRAALIALP-EEMRQRYAAHLLALLPPGARQLLI 151 (213)
T ss_pred EEE-----EccCCC-CCcccCCCcCEEEechhhccCC-HHHHHHHHHHHHHHcCCCCeEEEE
Confidence 111 112211 11 1135799999999999996 77787777777664 89987666
|
Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity. |
| >TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase | Back alignment and domain information |
|---|
Probab=98.64 E-value=3.2e-07 Score=85.53 Aligned_cols=99 Identities=15% Similarity=0.141 Sum_probs=67.8
Q ss_pred CCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCC--CCCceeechhhhHhhhhcccCCCcccE
Q 015771 30 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK--DLPLIHSYNSIQALNKDISKSEREHDL 107 (400)
Q Consensus 30 ~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~--~~~~~~~~~~~~~l~~~l~~~~~~~DL 107 (400)
.+.+|||+|||+|..+..++...+ ...+|+++|.+++|++.|++.++... ++.++.. +..... ....+||+
T Consensus 77 ~~~~VLDiG~GsG~~a~~la~~~~-~~g~V~~vD~~~~~~~~A~~~~~~~g~~~v~~~~~-----d~~~~~-~~~~~fD~ 149 (215)
T TIGR00080 77 PGMKVLEIGTGSGYQAAVLAEIVG-RDGLVVSIERIPELAEKAERRLRKLGLDNVIVIVG-----DGTQGW-EPLAPYDR 149 (215)
T ss_pred CcCEEEEECCCccHHHHHHHHHhC-CCCEEEEEeCCHHHHHHHHHHHHHCCCCCeEEEEC-----CcccCC-cccCCCCE
Confidence 347999999999999988887765 23579999999999999999886542 2222221 121111 12358999
Q ss_pred EeecccccCCCCHHHHHHHHHHHHhccCCeEEEEc
Q 015771 108 VIASYVLGEVPSLQDRITIVRQLWDLTRDVLVLVE 142 (400)
Q Consensus 108 Vias~~L~eL~~~~~r~~~i~~Lw~~~gG~LVlVE 142 (400)
|++......++. .+.+.+ ++||.||+.-
T Consensus 150 Ii~~~~~~~~~~------~~~~~L-~~gG~lv~~~ 177 (215)
T TIGR00080 150 IYVTAAGPKIPE------ALIDQL-KEGGILVMPV 177 (215)
T ss_pred EEEcCCcccccH------HHHHhc-CcCcEEEEEE
Confidence 999887766641 233344 3799998763
|
Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt. |
| >PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.64 E-value=3.4e-07 Score=85.28 Aligned_cols=99 Identities=14% Similarity=0.197 Sum_probs=67.9
Q ss_pred CCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCC--CCCceeechhhhHhhhhcccCCCcccE
Q 015771 30 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK--DLPLIHSYNSIQALNKDISKSEREHDL 107 (400)
Q Consensus 30 ~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~--~~~~~~~~~~~~~l~~~l~~~~~~~DL 107 (400)
...+|||+|||+|..+..++...+ ...+|+++|.+++|++.+++.++... ++.++.. +..... ....+||+
T Consensus 76 ~g~~VLdIG~GsG~~t~~la~~~~-~~~~V~~vE~~~~~~~~a~~~l~~~g~~~v~~~~g-----d~~~~~-~~~~~fD~ 148 (212)
T PRK13942 76 EGMKVLEIGTGSGYHAAVVAEIVG-KSGKVVTIERIPELAEKAKKTLKKLGYDNVEVIVG-----DGTLGY-EENAPYDR 148 (212)
T ss_pred CcCEEEEECCcccHHHHHHHHhcC-CCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEEC-----CcccCC-CcCCCcCE
Confidence 347999999999999877776654 34689999999999999999886542 2222221 111111 23468999
Q ss_pred EeecccccCCCCHHHHHHHHHHHHhccCCeEEEEc
Q 015771 108 VIASYVLGEVPSLQDRITIVRQLWDLTRDVLVLVE 142 (400)
Q Consensus 108 Vias~~L~eL~~~~~r~~~i~~Lw~~~gG~LVlVE 142 (400)
|++...+.+++. .+.+ .+ ++||.||+..
T Consensus 149 I~~~~~~~~~~~-----~l~~-~L-kpgG~lvi~~ 176 (212)
T PRK13942 149 IYVTAAGPDIPK-----PLIE-QL-KDGGIMVIPV 176 (212)
T ss_pred EEECCCcccchH-----HHHH-hh-CCCcEEEEEE
Confidence 999888766641 2333 33 3799998864
|
|
| >PRK04266 fibrillarin; Provisional | Back alignment and domain information |
|---|
Probab=98.64 E-value=4.9e-07 Score=85.12 Aligned_cols=110 Identities=16% Similarity=0.140 Sum_probs=67.1
Q ss_pred HHHHHHHHCCCCCCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCCCCceeechhhhHhhhh
Q 015771 18 VTESFARRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKD 97 (400)
Q Consensus 18 vL~el~~rlp~~~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~~~~~~~~~~~~~l~~~ 97 (400)
+|..+ +.++-....+|||+|||+|..+..+++..+ ..+|+++|.|++|++.+.+.++...|+..+... ....
T Consensus 61 ll~~~-~~l~i~~g~~VlD~G~G~G~~~~~la~~v~--~g~V~avD~~~~ml~~l~~~a~~~~nv~~i~~D-----~~~~ 132 (226)
T PRK04266 61 ILKGL-KNFPIKKGSKVLYLGAASGTTVSHVSDIVE--EGVVYAVEFAPRPMRELLEVAEERKNIIPILAD-----ARKP 132 (226)
T ss_pred HHhhH-hhCCCCCCCEEEEEccCCCHHHHHHHHhcC--CCeEEEEECCHHHHHHHHHHhhhcCCcEEEECC-----CCCc
Confidence 44444 334433346999999999999988887764 358999999999998766665543344333221 1110
Q ss_pred --cccCCCcccEEeecccccCCCCHHHHHHHHHHHHh--ccCCeEEE
Q 015771 98 --ISKSEREHDLVIASYVLGEVPSLQDRITIVRQLWD--LTRDVLVL 140 (400)
Q Consensus 98 --l~~~~~~~DLVias~~L~eL~~~~~r~~~i~~Lw~--~~gG~LVl 140 (400)
......+||+|++. ++.+.....+++++.+ +|||.|+|
T Consensus 133 ~~~~~l~~~~D~i~~d-----~~~p~~~~~~L~~~~r~LKpGG~lvI 174 (226)
T PRK04266 133 ERYAHVVEKVDVIYQD-----VAQPNQAEIAIDNAEFFLKDGGYLLL 174 (226)
T ss_pred chhhhccccCCEEEEC-----CCChhHHHHHHHHHHHhcCCCcEEEE
Confidence 00112469999853 3333222233444443 38999999
|
|
| >PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.62 E-value=6.1e-07 Score=89.58 Aligned_cols=113 Identities=18% Similarity=0.180 Sum_probs=75.7
Q ss_pred CCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCCCCceeechhhhHhhhhcccCCCcccEEe
Q 015771 30 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDISKSEREHDLVI 109 (400)
Q Consensus 30 ~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~~~~~~~~~~~~~l~~~l~~~~~~~DLVi 109 (400)
...+|||+|||+|..+..+....+ ..+++++|.|+.|++.++..++... +... .. ..+.. ....++||+||
T Consensus 196 ~~g~VLDlGCG~G~ls~~la~~~p--~~~v~~vDis~~Al~~A~~nl~~n~-l~~~-~~--~~D~~---~~~~~~fDlIv 266 (342)
T PRK09489 196 TKGKVLDVGCGAGVLSAVLARHSP--KIRLTLSDVSAAALESSRATLAANG-LEGE-VF--ASNVF---SDIKGRFDMII 266 (342)
T ss_pred CCCeEEEeccCcCHHHHHHHHhCC--CCEEEEEECCHHHHHHHHHHHHHcC-CCCE-EE--Ecccc---cccCCCccEEE
Confidence 346899999999999888887765 3579999999999999998776432 2211 00 01111 11346899999
Q ss_pred ecccccCCCC--HHHHHHHHHHHHhc--cCCeEEEEcCCCCCchHHH
Q 015771 110 ASYVLGEVPS--LQDRITIVRQLWDL--TRDVLVLVEPGTPQGSSII 152 (400)
Q Consensus 110 as~~L~eL~~--~~~r~~~i~~Lw~~--~gG~LVlVE~Gtp~Gf~~I 152 (400)
++..++.... ......++.+..+. +||.|+||-+.. ..|..+
T Consensus 267 sNPPFH~g~~~~~~~~~~~i~~a~~~LkpgG~L~iVan~~-l~y~~~ 312 (342)
T PRK09489 267 SNPPFHDGIQTSLDAAQTLIRGAVRHLNSGGELRIVANAF-LPYPDL 312 (342)
T ss_pred ECCCccCCccccHHHHHHHHHHHHHhcCcCCEEEEEEeCC-CChHHH
Confidence 9988775322 23345566665553 899999997643 446543
|
|
| >PRK04457 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.61 E-value=4.1e-07 Score=87.54 Aligned_cols=112 Identities=12% Similarity=0.093 Sum_probs=68.4
Q ss_pred CCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCCCCceeechhhhHhhhhcccCCCcccEEe
Q 015771 30 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDISKSEREHDLVI 109 (400)
Q Consensus 30 ~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~~~~~~~~~~~~~l~~~l~~~~~~~DLVi 109 (400)
.|.+|||+|||.|+.+..+...+| ..++++||+++++++.|++.+......+.++.. ..+....+.....+||+|+
T Consensus 66 ~~~~vL~IG~G~G~l~~~l~~~~p--~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~--~~Da~~~l~~~~~~yD~I~ 141 (262)
T PRK04457 66 RPQHILQIGLGGGSLAKFIYTYLP--DTRQTAVEINPQVIAVARNHFELPENGERFEVI--EADGAEYIAVHRHSTDVIL 141 (262)
T ss_pred CCCEEEEECCCHhHHHHHHHHhCC--CCeEEEEECCHHHHHHHHHHcCCCCCCCceEEE--ECCHHHHHHhCCCCCCEEE
Confidence 468999999999999988888776 358999999999999999887532211211110 1122211222345899999
Q ss_pred eccc-ccCCCCHHHHHHHHHHHHhc--cCCeEEEEcCCC
Q 015771 110 ASYV-LGEVPSLQDRITIVRQLWDL--TRDVLVLVEPGT 145 (400)
Q Consensus 110 as~~-L~eL~~~~~r~~~i~~Lw~~--~gG~LVlVE~Gt 145 (400)
+... -...+......++++++.+. +||.|++--.+.
T Consensus 142 ~D~~~~~~~~~~l~t~efl~~~~~~L~pgGvlvin~~~~ 180 (262)
T PRK04457 142 VDGFDGEGIIDALCTQPFFDDCRNALSSDGIFVVNLWSR 180 (262)
T ss_pred EeCCCCCCCccccCcHHHHHHHHHhcCCCcEEEEEcCCC
Confidence 7531 11222111123445554443 799999854433
|
|
| >PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases | Back alignment and domain information |
|---|
Probab=98.61 E-value=9.1e-07 Score=79.49 Aligned_cols=115 Identities=19% Similarity=0.195 Sum_probs=73.1
Q ss_pred CCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCCCCceeechhhhHhhhhcccCCCcccEEe
Q 015771 30 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDISKSEREHDLVI 109 (400)
Q Consensus 30 ~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~~~~~~~~~~~~~l~~~l~~~~~~~DLVi 109 (400)
...+|||+|||+|..++.++...+ ..+++++|.|+.+++.++..++... ...+... ..++...+ ...+||+|+
T Consensus 31 ~~~~vLDlG~G~G~i~~~la~~~~--~~~v~~vDi~~~a~~~a~~n~~~n~-~~~v~~~--~~d~~~~~--~~~~fD~Iv 103 (170)
T PF05175_consen 31 KGGRVLDLGCGSGVISLALAKRGP--DAKVTAVDINPDALELAKRNAERNG-LENVEVV--QSDLFEAL--PDGKFDLIV 103 (170)
T ss_dssp TTCEEEEETSTTSHHHHHHHHTST--CEEEEEEESBHHHHHHHHHHHHHTT-CTTEEEE--ESSTTTTC--CTTCEEEEE
T ss_pred cCCeEEEecCChHHHHHHHHHhCC--CCEEEEEcCCHHHHHHHHHHHHhcC-ccccccc--cccccccc--cccceeEEE
Confidence 347999999999999999887765 3469999999999999998886532 2212211 11222222 357899999
Q ss_pred ecccccCCCC--HHHHHHHHHHHHhc--cCCeEEEEcCCCCCchHHH
Q 015771 110 ASYVLGEVPS--LQDRITIVRQLWDL--TRDVLVLVEPGTPQGSSII 152 (400)
Q Consensus 110 as~~L~eL~~--~~~r~~~i~~Lw~~--~gG~LVlVE~Gtp~Gf~~I 152 (400)
++--++.-.. ..-...++++..+. +||.|++|-. +..+++.+
T Consensus 104 ~NPP~~~~~~~~~~~~~~~i~~a~~~Lk~~G~l~lv~~-~~~~~~~~ 149 (170)
T PF05175_consen 104 SNPPFHAGGDDGLDLLRDFIEQARRYLKPGGRLFLVIN-SHLGYERL 149 (170)
T ss_dssp E---SBTTSHCHHHHHHHHHHHHHHHEEEEEEEEEEEE-TTSCHHHH
T ss_pred EccchhcccccchhhHHHHHHHHHHhccCCCEEEEEee-cCCChHHH
Confidence 9876554431 11233455554443 7999987765 35566555
|
; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A .... |
| >COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=98.60 E-value=5.5e-07 Score=86.79 Aligned_cols=122 Identities=16% Similarity=0.085 Sum_probs=83.0
Q ss_pred HHHHHHHHHHCCCCCCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCCCCceeechhhhHhh
Q 015771 16 LLVTESFARRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALN 95 (400)
Q Consensus 16 ~~vL~el~~rlp~~~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~~~~~~~~~~~~~l~ 95 (400)
.+.++.+.+.+.--.+.+|||||||-|..+..+++.++ .+|++|+.|+++.+.+++.+...+-...++.. ++++.
T Consensus 58 ~~k~~~~~~kl~L~~G~~lLDiGCGWG~l~~~aA~~y~---v~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~--l~d~r 132 (283)
T COG2230 58 RAKLDLILEKLGLKPGMTLLDIGCGWGGLAIYAAEEYG---VTVVGVTLSEEQLAYAEKRIAARGLEDNVEVR--LQDYR 132 (283)
T ss_pred HHHHHHHHHhcCCCCCCEEEEeCCChhHHHHHHHHHcC---CEEEEeeCCHHHHHHHHHHHHHcCCCcccEEE--ecccc
Confidence 34566666666544458999999999999888887664 68999999999999999977654321112111 12222
Q ss_pred hhcccCCCcccEEeecccccCCCC--HHHHHHHHHHHHhccCCeEEEEcCCCCC
Q 015771 96 KDISKSEREHDLVIASYVLGEVPS--LQDRITIVRQLWDLTRDVLVLVEPGTPQ 147 (400)
Q Consensus 96 ~~l~~~~~~~DLVias~~L~eL~~--~~~r~~~i~~Lw~~~gG~LVlVE~Gtp~ 147 (400)
...++||-||+--++.++.. ...-...+.++++ +||.+++-.-+.+.
T Consensus 133 ----d~~e~fDrIvSvgmfEhvg~~~~~~ff~~~~~~L~-~~G~~llh~I~~~~ 181 (283)
T COG2230 133 ----DFEEPFDRIVSVGMFEHVGKENYDDFFKKVYALLK-PGGRMLLHSITGPD 181 (283)
T ss_pred ----ccccccceeeehhhHHHhCcccHHHHHHHHHhhcC-CCceEEEEEecCCC
Confidence 23345999999999999964 2222334444443 79999988777666
|
|
| >PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.57 E-value=5.3e-07 Score=90.94 Aligned_cols=106 Identities=14% Similarity=0.122 Sum_probs=67.9
Q ss_pred CCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCC--CCceeechhhhHhhhhcccCCCcccEE
Q 015771 31 PAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKD--LPLIHSYNSIQALNKDISKSEREHDLV 108 (400)
Q Consensus 31 p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~--~~~~~~~~~~~~l~~~l~~~~~~~DLV 108 (400)
..+|||+|||+|....+++..+| ..+++++|.|+.|++.++..++.... ...+... ..+....+ ...+||+|
T Consensus 229 ~~~VLDLGCGtGvi~i~la~~~P--~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~--~~D~l~~~--~~~~fDlI 302 (378)
T PRK15001 229 EGEIVDLGCGNGVIGLTLLDKNP--QAKVVFVDESPMAVASSRLNVETNMPEALDRCEFM--INNALSGV--EPFRFNAV 302 (378)
T ss_pred CCeEEEEeccccHHHHHHHHhCC--CCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEE--EccccccC--CCCCEEEE
Confidence 35999999999999988888776 35899999999999999987753211 1111111 11111111 23579999
Q ss_pred eecccccCC--CCHHHHHHHHHHHHhc--cCCeEEEEc
Q 015771 109 IASYVLGEV--PSLQDRITIVRQLWDL--TRDVLVLVE 142 (400)
Q Consensus 109 ias~~L~eL--~~~~~r~~~i~~Lw~~--~gG~LVlVE 142 (400)
+++--++.. -+.....+++....+. +||.|+||-
T Consensus 303 lsNPPfh~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV~ 340 (378)
T PRK15001 303 LCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIVA 340 (378)
T ss_pred EECcCcccCccCCHHHHHHHHHHHHHhcccCCEEEEEE
Confidence 997444332 1223334555555443 799999884
|
|
| >TIGR00406 prmA ribosomal protein L11 methyltransferase | Back alignment and domain information |
|---|
Probab=98.57 E-value=1.1e-06 Score=85.71 Aligned_cols=114 Identities=16% Similarity=0.087 Sum_probs=69.5
Q ss_pred HHHHHHHHHHHHCCCCCCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCCCC-ceeechhhh
Q 015771 14 FTLLVTESFARRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLP-LIHSYNSIQ 92 (400)
Q Consensus 14 ~~~~vL~el~~rlp~~~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~~~-~~~~~~~~~ 92 (400)
++.-++..+.+.. ..+.+|||+|||+|..+.+++.. + ..+++++|.|+.|++.|+..+.... +. .+... ..
T Consensus 145 tt~l~l~~l~~~~--~~g~~VLDvGcGsG~lai~aa~~-g--~~~V~avDid~~al~~a~~n~~~n~-~~~~~~~~--~~ 216 (288)
T TIGR00406 145 TTSLCLEWLEDLD--LKDKNVIDVGCGSGILSIAALKL-G--AAKVVGIDIDPLAVESARKNAELNQ-VSDRLQVK--LI 216 (288)
T ss_pred HHHHHHHHHHhhc--CCCCEEEEeCCChhHHHHHHHHc-C--CCeEEEEECCHHHHHHHHHHHHHcC-CCcceEEE--ec
Confidence 3333444444332 23479999999999888776643 2 3589999999999999998876432 21 11110 01
Q ss_pred HhhhhcccCCCcccEEeecccccCCCCHHHHHHHHHHHHh--ccCCeEEEEcCC
Q 015771 93 ALNKDISKSEREHDLVIASYVLGEVPSLQDRITIVRQLWD--LTRDVLVLVEPG 144 (400)
Q Consensus 93 ~l~~~l~~~~~~~DLVias~~L~eL~~~~~r~~~i~~Lw~--~~gG~LVlVE~G 144 (400)
+. .....++||+|+++..... ...++.++.+ ++||.|++....
T Consensus 217 ~~---~~~~~~~fDlVvan~~~~~------l~~ll~~~~~~LkpgG~li~sgi~ 261 (288)
T TIGR00406 217 YL---EQPIEGKADVIVANILAEV------IKELYPQFSRLVKPGGWLILSGIL 261 (288)
T ss_pred cc---ccccCCCceEEEEecCHHH------HHHHHHHHHHHcCCCcEEEEEeCc
Confidence 11 1123468999998754322 2233433333 279999998664
|
Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis. |
| >PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional | Back alignment and domain information |
|---|
Probab=98.55 E-value=9.7e-07 Score=82.14 Aligned_cols=130 Identities=12% Similarity=0.053 Sum_probs=73.3
Q ss_pred HHHHHHHCCCC-CCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCCCCceeechh----hhH
Q 015771 19 TESFARRLPGF-SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNS----IQA 93 (400)
Q Consensus 19 L~el~~rlp~~-~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~~~~~~~~~~----~~~ 93 (400)
|.|+..+..-+ ...+|||+|||||..+..+++..+ ....|++||+++ |. ...++.+++.... +..
T Consensus 39 l~~~~~~~~~~~~~~~VLDlG~GtG~~t~~l~~~~~-~~~~V~aVDi~~-~~--------~~~~v~~i~~D~~~~~~~~~ 108 (209)
T PRK11188 39 LDEIQQSDKLFKPGMTVVDLGAAPGGWSQYAVTQIG-DKGRVIACDILP-MD--------PIVGVDFLQGDFRDELVLKA 108 (209)
T ss_pred hHHHHHHhccCCCCCEEEEEcccCCHHHHHHHHHcC-CCceEEEEeccc-cc--------CCCCcEEEecCCCChHHHHH
Confidence 34454444423 346899999999999888887765 246899999988 32 1122322222110 001
Q ss_pred hhhhcccCCCcccEEeecccccCCCCHH---HH-----HHHHHHHHh--ccCCeEEEEcCCCCCchHHHHHHHHHHH
Q 015771 94 LNKDISKSEREHDLVIASYVLGEVPSLQ---DR-----ITIVRQLWD--LTRDVLVLVEPGTPQGSSIISQMRSHIL 160 (400)
Q Consensus 94 l~~~l~~~~~~~DLVias~~L~eL~~~~---~r-----~~~i~~Lw~--~~gG~LVlVE~Gtp~Gf~~I~~aR~~lL 160 (400)
+... ...++||+|++..+.+...+.. .+ ..+++.+.+ ++||.|++.......=-+.+..+|..+.
T Consensus 109 i~~~--~~~~~~D~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~~~~~~~~~~l~~l~~~f~ 183 (209)
T PRK11188 109 LLER--VGDSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVFQGEGFDEYLREIRSLFT 183 (209)
T ss_pred HHHH--hCCCCCCEEecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEecCcCHHHHHHHHHhCce
Confidence 1111 2346899999977666543221 11 123333332 2899999976655443445556665554
|
|
| >PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=98.55 E-value=8.7e-07 Score=83.86 Aligned_cols=101 Identities=18% Similarity=0.276 Sum_probs=73.0
Q ss_pred CCCCC-CeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCCCCceeechhhhHhhhhcccCCCcc
Q 015771 27 PGFSP-AKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDISKSEREH 105 (400)
Q Consensus 27 p~~~p-~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~~~~~~~~~~~~~l~~~l~~~~~~~ 105 (400)
.+|.+ .+|||||+|.|..+.++...+|. .++++.|. |++++.++. ...+.++.. ++-..+ + . +
T Consensus 96 ~d~~~~~~vvDvGGG~G~~~~~l~~~~P~--l~~~v~Dl-p~v~~~~~~----~~rv~~~~g-----d~f~~~--P-~-~ 159 (241)
T PF00891_consen 96 FDFSGFKTVVDVGGGSGHFAIALARAYPN--LRATVFDL-PEVIEQAKE----ADRVEFVPG-----DFFDPL--P-V-A 159 (241)
T ss_dssp STTTTSSEEEEET-TTSHHHHHHHHHSTT--SEEEEEE--HHHHCCHHH----TTTEEEEES------TTTCC--S-S-E
T ss_pred ccccCccEEEeccCcchHHHHHHHHHCCC--Ccceeecc-Hhhhhcccc----ccccccccc-----cHHhhh--c-c-c
Confidence 45654 58999999999999999999984 47999998 888888877 112222221 222222 2 3 9
Q ss_pred cEEeecccccCCCCHHHHHHHHHHHHhc--cC--CeEEEEcCC
Q 015771 106 DLVIASYVLGEVPSLQDRITIVRQLWDL--TR--DVLVLVEPG 144 (400)
Q Consensus 106 DLVias~~L~eL~~~~~r~~~i~~Lw~~--~g--G~LVlVE~G 144 (400)
|+|+++++||..+ .++-..+++++.+. || |.|+|+|.-
T Consensus 160 D~~~l~~vLh~~~-d~~~~~iL~~~~~al~pg~~g~llI~e~~ 201 (241)
T PF00891_consen 160 DVYLLRHVLHDWS-DEDCVKILRNAAAALKPGKDGRLLIIEMV 201 (241)
T ss_dssp SEEEEESSGGGS--HHHHHHHHHHHHHHSEECTTEEEEEEEEE
T ss_pred cceeeehhhhhcc-hHHHHHHHHHHHHHhCCCCCCeEEEEeec
Confidence 9999999999997 66777888888775 78 999999874
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A .... |
| >PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4) | Back alignment and domain information |
|---|
Probab=98.54 E-value=7.2e-07 Score=86.33 Aligned_cols=121 Identities=15% Similarity=0.119 Sum_probs=74.7
Q ss_pred HHHHHHHHHCCCCCCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCCCCceeechhhhHhhh
Q 015771 17 LVTESFARRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNK 96 (400)
Q Consensus 17 ~vL~el~~rlp~~~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~~~~~~~~~~~~~l~~ 96 (400)
+-++.+.+++.--.+.+|||+|||-|..+..+++.++ .+|++|..|.+..+.+++.+++.+....+... ..+..
T Consensus 49 ~k~~~~~~~~~l~~G~~vLDiGcGwG~~~~~~a~~~g---~~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~--~~D~~- 122 (273)
T PF02353_consen 49 RKLDLLCEKLGLKPGDRVLDIGCGWGGLAIYAAERYG---CHVTGITLSEEQAEYARERIREAGLEDRVEVR--LQDYR- 122 (273)
T ss_dssp HHHHHHHTTTT--TT-EEEEES-TTSHHHHHHHHHH-----EEEEEES-HHHHHHHHHHHHCSTSSSTEEEE--ES-GG-
T ss_pred HHHHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHcC---cEEEEEECCHHHHHHHHHHHHhcCCCCceEEE--Eeecc-
Confidence 3455566665443457999999999999988887764 58999999999999999988765322222211 12222
Q ss_pred hcccCCCcccEEeecccccCCCCHHHHHHHHHHHHh--ccCCeEEEEcCCCCC
Q 015771 97 DISKSEREHDLVIASYVLGEVPSLQDRITIVRQLWD--LTRDVLVLVEPGTPQ 147 (400)
Q Consensus 97 ~l~~~~~~~DLVias~~L~eL~~~~~r~~~i~~Lw~--~~gG~LVlVE~Gtp~ 147 (400)
.+ ..+||-||+--++.++. ......+++++.+ +|||.+++-....+.
T Consensus 123 ~~---~~~fD~IvSi~~~Ehvg-~~~~~~~f~~~~~~LkpgG~~~lq~i~~~~ 171 (273)
T PF02353_consen 123 DL---PGKFDRIVSIEMFEHVG-RKNYPAFFRKISRLLKPGGRLVLQTITHRD 171 (273)
T ss_dssp G------S-SEEEEESEGGGTC-GGGHHHHHHHHHHHSETTEEEEEEEEEE--
T ss_pred cc---CCCCCEEEEEechhhcC-hhHHHHHHHHHHHhcCCCcEEEEEeccccc
Confidence 12 34899999999999995 3444445555444 389999865554444
|
All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: |
| >PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.53 E-value=2.1e-06 Score=81.93 Aligned_cols=109 Identities=18% Similarity=0.201 Sum_probs=69.0
Q ss_pred HHHHHHHHHHHHHCCCCCCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCCC-Cceeechhh
Q 015771 13 LFTLLVTESFARRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDL-PLIHSYNSI 91 (400)
Q Consensus 13 a~~~~vL~el~~rlp~~~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~~-~~~~~~~~~ 91 (400)
.++..++..+.... ..+.+|||+|||+|..+.++... + ..+++++|+|+.|++.|+..+... ++ ..+.
T Consensus 104 ~tt~~~l~~l~~~~--~~~~~VLDiGcGsG~l~i~~~~~-g--~~~v~giDis~~~l~~A~~n~~~~-~~~~~~~----- 172 (250)
T PRK00517 104 PTTRLCLEALEKLV--LPGKTVLDVGCGSGILAIAAAKL-G--AKKVLAVDIDPQAVEAARENAELN-GVELNVY----- 172 (250)
T ss_pred HHHHHHHHHHHhhc--CCCCEEEEeCCcHHHHHHHHHHc-C--CCeEEEEECCHHHHHHHHHHHHHc-CCCceEE-----
Confidence 44455566665543 24579999999999888776643 2 236999999999999999887543 22 1111
Q ss_pred hHhhhhcccCCCcccEEeecccccCCCCHHHHHHHHHHHHhc--cCCeEEEEcCC
Q 015771 92 QALNKDISKSEREHDLVIASYVLGEVPSLQDRITIVRQLWDL--TRDVLVLVEPG 144 (400)
Q Consensus 92 ~~l~~~l~~~~~~~DLVias~~L~eL~~~~~r~~~i~~Lw~~--~gG~LVlVE~G 144 (400)
+.....+||+|+++... .....++.++.+. +||.||+....
T Consensus 173 ------~~~~~~~fD~Vvani~~------~~~~~l~~~~~~~LkpgG~lilsgi~ 215 (250)
T PRK00517 173 ------LPQGDLKADVIVANILA------NPLLELAPDLARLLKPGGRLILSGIL 215 (250)
T ss_pred ------EccCCCCcCEEEEcCcH------HHHHHHHHHHHHhcCCCcEEEEEECc
Confidence 11112279999986432 1223344454442 79999997543
|
|
| >PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=98.53 E-value=8.3e-07 Score=85.91 Aligned_cols=107 Identities=21% Similarity=0.267 Sum_probs=74.2
Q ss_pred HHHHCCCCCCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHH---HHHhhcCCCCCCceeec-hhhhHhhhh
Q 015771 22 FARRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRA---GQSLMQGPKDLPLIHSY-NSIQALNKD 97 (400)
Q Consensus 22 l~~rlp~~~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~---a~~ll~~~~~~~~~~~~-~~~~~l~~~ 97 (400)
+...+++++.++|||||||.|-.+|.+.. .....|+++|++.-..-. .+.++... .. +... ..++ .
T Consensus 107 l~p~l~~L~gk~VLDIGC~nGY~~frM~~---~GA~~ViGiDP~~lf~~QF~~i~~~lg~~--~~-~~~lplgvE----~ 176 (315)
T PF08003_consen 107 LLPHLPDLKGKRVLDIGCNNGYYSFRMLG---RGAKSVIGIDPSPLFYLQFEAIKHFLGQD--PP-VFELPLGVE----D 176 (315)
T ss_pred HHhhhCCcCCCEEEEecCCCcHHHHHHhh---cCCCEEEEECCChHHHHHHHHHHHHhCCC--cc-EEEcCcchh----h
Confidence 44445677889999999999999998774 345689999999876543 33333221 11 1110 0111 2
Q ss_pred cccCCCcccEEeecccccCCCCHHHHHHHHHHHHhccCCeEEE
Q 015771 98 ISKSEREHDLVIASYVLGEVPSLQDRITIVRQLWDLTRDVLVL 140 (400)
Q Consensus 98 l~~~~~~~DLVias~~L~eL~~~~~r~~~i~~Lw~~~gG~LVl 140 (400)
++. .+.||+|++.-||.+..++-+.+..+++.++ +||.|||
T Consensus 177 Lp~-~~~FDtVF~MGVLYHrr~Pl~~L~~Lk~~L~-~gGeLvL 217 (315)
T PF08003_consen 177 LPN-LGAFDTVFSMGVLYHRRSPLDHLKQLKDSLR-PGGELVL 217 (315)
T ss_pred ccc-cCCcCEEEEeeehhccCCHHHHHHHHHHhhC-CCCEEEE
Confidence 343 5789999999999999988877777777765 6999884
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification |
| >PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.51 E-value=2.2e-06 Score=78.81 Aligned_cols=116 Identities=15% Similarity=0.100 Sum_probs=69.9
Q ss_pred CCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCC---CCCceeechhhhHhhhhcccCCCccc
Q 015771 30 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK---DLPLIHSYNSIQALNKDISKSEREHD 106 (400)
Q Consensus 30 ~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~---~~~~~~~~~~~~~l~~~l~~~~~~~D 106 (400)
...+|||+|||+|..+.+++..++ ...+++++|.|+.|++.+++.+.... ++..+.. +....++.....||
T Consensus 40 ~~~~vlDlG~GtG~~s~~~a~~~~-~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~-----d~~~~l~~~~~~~D 113 (198)
T PRK00377 40 KGDMILDIGCGTGSVTVEASLLVG-ETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKG-----EAPEILFTINEKFD 113 (198)
T ss_pred CcCEEEEeCCcCCHHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEe-----chhhhHhhcCCCCC
Confidence 447999999999999888776654 34589999999999999988776432 2222211 12111222235799
Q ss_pred EEeecccccCCCCHHHHHHHHHHHHhccCCeEEEEcCCCCCchHHHHHHHHHH
Q 015771 107 LVIASYVLGEVPSLQDRITIVRQLWDLTRDVLVLVEPGTPQGSSIISQMRSHI 159 (400)
Q Consensus 107 LVias~~L~eL~~~~~r~~~i~~Lw~~~gG~LVlVE~Gtp~Gf~~I~~aR~~l 159 (400)
+|++...... .......+.+++ ++||.+|+. .- -++.+..+.+.+
T Consensus 114 ~V~~~~~~~~---~~~~l~~~~~~L-kpgG~lv~~-~~---~~~~~~~~~~~l 158 (198)
T PRK00377 114 RIFIGGGSEK---LKEIISASWEII-KKGGRIVID-AI---LLETVNNALSAL 158 (198)
T ss_pred EEEECCCccc---HHHHHHHHHHHc-CCCcEEEEE-ee---cHHHHHHHHHHH
Confidence 9998543222 222233333333 379999863 22 233445555544
|
|
| >PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A | Back alignment and domain information |
|---|
Probab=98.50 E-value=7.9e-07 Score=74.00 Aligned_cols=105 Identities=18% Similarity=0.200 Sum_probs=66.6
Q ss_pred CeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCC---CCceeechhhhHhhhhcccCCCcccEE
Q 015771 32 AKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKD---LPLIHSYNSIQALNKDISKSEREHDLV 108 (400)
Q Consensus 32 ~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~---~~~~~~~~~~~~l~~~l~~~~~~~DLV 108 (400)
.+|||+|||+|+.+.++.+.. ..+++++|.++..++.++..+..... ..++... ..+... ....++||+|
T Consensus 2 ~~vlD~~~G~G~~~~~~~~~~---~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D--~~~~~~--~~~~~~~D~I 74 (117)
T PF13659_consen 2 DRVLDPGCGSGTFLLAALRRG---AARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGD--ARDLPE--PLPDGKFDLI 74 (117)
T ss_dssp EEEEEETSTTCHHHHHHHHHC---TCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESH--HHHHHH--TCTTT-EEEE
T ss_pred CEEEEcCcchHHHHHHHHHHC---CCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECc--hhhchh--hccCceeEEE
Confidence 589999999999999988775 36899999999999999998865421 1122211 112211 1345789999
Q ss_pred eecccccCCCCHH-----HHHHHHHHHHhc--cCCeEEEEcC
Q 015771 109 IASYVLGEVPSLQ-----DRITIVRQLWDL--TRDVLVLVEP 143 (400)
Q Consensus 109 ias~~L~eL~~~~-----~r~~~i~~Lw~~--~gG~LVlVE~ 143 (400)
+++--........ .-..+++.+.+. +||.++++-+
T Consensus 75 v~npP~~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~~~ 116 (117)
T PF13659_consen 75 VTNPPYGPRSGDKAALRRLYSRFLEAAARLLKPGGVLVFITP 116 (117)
T ss_dssp EE--STTSBTT----GGCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred EECCCCccccccchhhHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence 9975554322111 123455555553 7999998743
|
... |
| >PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins | Back alignment and domain information |
|---|
Probab=98.45 E-value=1.7e-06 Score=78.64 Aligned_cols=93 Identities=19% Similarity=0.271 Sum_probs=68.4
Q ss_pred CeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCCCCceeechhhhHhhhhcc-cCCCcccEEee
Q 015771 32 AKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDIS-KSEREHDLVIA 110 (400)
Q Consensus 32 ~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~~~~~~~~~~~~~l~~~l~-~~~~~~DLVia 110 (400)
.+|||+|||.|+.+-.+.+. ...+.++||++++.+..+.+ ..+++++. +++..+. .++++||.||+
T Consensus 15 srVLDLGCGdG~LL~~L~~~---k~v~g~GvEid~~~v~~cv~-----rGv~Viq~-----Dld~gL~~f~d~sFD~VIl 81 (193)
T PF07021_consen 15 SRVLDLGCGDGELLAYLKDE---KQVDGYGVEIDPDNVAACVA-----RGVSVIQG-----DLDEGLADFPDQSFDYVIL 81 (193)
T ss_pred CEEEecCCCchHHHHHHHHh---cCCeEEEEecCHHHHHHHHH-----cCCCEEEC-----CHHHhHhhCCCCCccEEeh
Confidence 79999999999998777764 34689999999998766543 14555543 3554553 56789999999
Q ss_pred cccccCCCCHHHHHHHHHHHHhccCCeEEEE
Q 015771 111 SYVLGEVPSLQDRITIVRQLWDLTRDVLVLV 141 (400)
Q Consensus 111 s~~L~eL~~~~~r~~~i~~Lw~~~gG~LVlV 141 (400)
+.+|..+..+ ..++++|++- |...|+.
T Consensus 82 sqtLQ~~~~P---~~vL~EmlRV-gr~~IVs 108 (193)
T PF07021_consen 82 SQTLQAVRRP---DEVLEEMLRV-GRRAIVS 108 (193)
T ss_pred HhHHHhHhHH---HHHHHHHHHh-cCeEEEE
Confidence 9999998654 3578888874 5555544
|
Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells []. |
| >PRK13255 thiopurine S-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.44 E-value=2.7e-06 Score=79.71 Aligned_cols=117 Identities=19% Similarity=-0.022 Sum_probs=71.4
Q ss_pred HHHHHHHHHCCCCCCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCC------------CCc
Q 015771 17 LVTESFARRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKD------------LPL 84 (400)
Q Consensus 17 ~vL~el~~rlp~~~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~------------~~~ 84 (400)
..|.+...++...+..+|||+|||.|..+..+++ ...+|++||.|+.+++.+..... ... ...
T Consensus 24 ~~L~~~~~~~~~~~~~rvL~~gCG~G~da~~LA~----~G~~V~avD~s~~Ai~~~~~~~~-l~~~~~~~~~~~~~~~~~ 98 (218)
T PRK13255 24 PLLQKYWPALALPAGSRVLVPLCGKSLDMLWLAE----QGHEVLGVELSELAVEQFFAENG-LTPQTRQSGEFEHYQAGE 98 (218)
T ss_pred HHHHHHHHhhCCCCCCeEEEeCCCChHhHHHHHh----CCCeEEEEccCHHHHHHHHHHcC-CCccccccccccccccCc
Confidence 3444443333222346999999999988877773 46789999999999987532110 000 000
Q ss_pred eeechhhhHhhhhcccCCCcccEEeecccccCCCCHHHHHHHHHHHHhc--cCCeEEEE
Q 015771 85 IHSYNSIQALNKDISKSEREHDLVIASYVLGEVPSLQDRITIVRQLWDL--TRDVLVLV 141 (400)
Q Consensus 85 ~~~~~~~~~l~~~l~~~~~~~DLVias~~L~eL~~~~~r~~~i~~Lw~~--~gG~LVlV 141 (400)
++ ....++..-.+.....||+|+-.-+++.++ ++.|..++..+.+. |||.++++
T Consensus 99 v~--~~~~D~~~l~~~~~~~fd~v~D~~~~~~l~-~~~R~~~~~~l~~lL~pgG~~~l~ 154 (218)
T PRK13255 99 IT--IYCGDFFALTAADLADVDAVYDRAALIALP-EEMRERYVQQLAALLPAGCRGLLV 154 (218)
T ss_pred eE--EEECcccCCCcccCCCeeEEEehHhHhhCC-HHHHHHHHHHHHHHcCCCCeEEEE
Confidence 10 001112110011235799999999999996 77888877777664 78865543
|
|
| >PRK14967 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.44 E-value=4.8e-06 Score=78.00 Aligned_cols=71 Identities=20% Similarity=0.223 Sum_probs=48.5
Q ss_pred CCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCC-CCCceeechhhhHhhhhcccCCCcccEEe
Q 015771 31 PAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK-DLPLIHSYNSIQALNKDISKSEREHDLVI 109 (400)
Q Consensus 31 p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~-~~~~~~~~~~~~~l~~~l~~~~~~~DLVi 109 (400)
..+|||+|||+|..+..++.. + ..+++++|.|+.|++.++..+.... +..++. .++...+ ..++||+|+
T Consensus 37 ~~~vLDlGcG~G~~~~~la~~-~--~~~v~~vD~s~~~l~~a~~n~~~~~~~~~~~~-----~d~~~~~--~~~~fD~Vi 106 (223)
T PRK14967 37 GRRVLDLCTGSGALAVAAAAA-G--AGSVTAVDISRRAVRSARLNALLAGVDVDVRR-----GDWARAV--EFRPFDVVV 106 (223)
T ss_pred CCeEEEecCCHHHHHHHHHHc-C--CCeEEEEECCHHHHHHHHHHHHHhCCeeEEEE-----Cchhhhc--cCCCeeEEE
Confidence 369999999999987776643 2 3489999999999999988775432 111111 1222112 346899999
Q ss_pred ec
Q 015771 110 AS 111 (400)
Q Consensus 110 as 111 (400)
++
T Consensus 107 ~n 108 (223)
T PRK14967 107 SN 108 (223)
T ss_pred EC
Confidence 86
|
|
| >COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.42 E-value=1.8e-06 Score=83.97 Aligned_cols=115 Identities=23% Similarity=0.247 Sum_probs=72.3
Q ss_pred HHHHHHHHHHHHHCCCCCCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCCCCc-eeechhh
Q 015771 13 LFTLLVTESFARRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPL-IHSYNSI 91 (400)
Q Consensus 13 a~~~~vL~el~~rlp~~~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~~~~-~~~~~~~ 91 (400)
+++.-+|..+.+.+ .++.+|||+|||+|.+++|++.. ...+++++|+++-.++.|+..+... +++. .+.. .
T Consensus 147 pTT~lcL~~Le~~~--~~g~~vlDvGcGSGILaIAa~kL---GA~~v~g~DiDp~AV~aa~eNa~~N-~v~~~~~~~--~ 218 (300)
T COG2264 147 PTTSLCLEALEKLL--KKGKTVLDVGCGSGILAIAAAKL---GAKKVVGVDIDPQAVEAARENARLN-GVELLVQAK--G 218 (300)
T ss_pred hhHHHHHHHHHHhh--cCCCEEEEecCChhHHHHHHHHc---CCceEEEecCCHHHHHHHHHHHHHc-CCchhhhcc--c
Confidence 44555666666553 36789999999999999998753 3468999999999999999987642 2321 1100 0
Q ss_pred hHhhhhcccCCCcccEEeecccccCCCCHHHHHHHHHHHHhccCCeEEEE
Q 015771 92 QALNKDISKSEREHDLVIASYVLGEVPSLQDRITIVRQLWDLTRDVLVLV 141 (400)
Q Consensus 92 ~~l~~~l~~~~~~~DLVias~~L~eL~~~~~r~~~i~~Lw~~~gG~LVlV 141 (400)
.... .. ...++||+||++- |-+. ......-+..+.+ |||++|+.
T Consensus 219 ~~~~-~~-~~~~~~DvIVANI-LA~v--l~~La~~~~~~lk-pgg~lIlS 262 (300)
T COG2264 219 FLLL-EV-PENGPFDVIVANI-LAEV--LVELAPDIKRLLK-PGGRLILS 262 (300)
T ss_pred ccch-hh-cccCcccEEEehh-hHHH--HHHHHHHHHHHcC-CCceEEEE
Confidence 0011 11 1336899999876 3322 1122233444443 79999976
|
|
| >TIGR00438 rrmJ cell division protein FtsJ | Back alignment and domain information |
|---|
Probab=98.42 E-value=2.3e-06 Score=77.97 Aligned_cols=127 Identities=11% Similarity=0.122 Sum_probs=67.5
Q ss_pred HHHHHHHCCCCC-CCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCCCCceeechh----hhH
Q 015771 19 TESFARRLPGFS-PAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNS----IQA 93 (400)
Q Consensus 19 L~el~~rlp~~~-p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~~~~~~~~~~----~~~ 93 (400)
+.++.++....+ ..+|||+|||||..+.++...+. ...+++++|.|+.| .. .++..+..... ...
T Consensus 20 ~~~~~~~~~~i~~g~~VLDiG~GtG~~~~~l~~~~~-~~~~v~~vDis~~~------~~---~~i~~~~~d~~~~~~~~~ 89 (188)
T TIGR00438 20 LLQLNQKFKLIKPGDTVLDLGAAPGGWSQVAVEQVG-GKGRVIAVDLQPMK------PI---ENVDFIRGDFTDEEVLNK 89 (188)
T ss_pred HHHHHHHhcccCCCCEEEEecCCCCHHHHHHHHHhC-CCceEEEEeccccc------cC---CCceEEEeeCCChhHHHH
Confidence 344444444333 46999999999999887776663 23589999999865 11 12222211100 000
Q ss_pred hhhhcccCCCcccEEeeccccc-----CCCC---HHHHHHHHHHHHhc--cCCeEEEEcCCCCCch-HHHHHHHHH
Q 015771 94 LNKDISKSEREHDLVIASYVLG-----EVPS---LQDRITIVRQLWDL--TRDVLVLVEPGTPQGS-SIISQMRSH 158 (400)
Q Consensus 94 l~~~l~~~~~~~DLVias~~L~-----eL~~---~~~r~~~i~~Lw~~--~gG~LVlVE~Gtp~Gf-~~I~~aR~~ 158 (400)
+... ...++||+|++..+.+ .+.. ......++.++++. +||.+++.-. .+..+ +.+..+|+.
T Consensus 90 l~~~--~~~~~~D~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~~-~~~~~~~~l~~l~~~ 162 (188)
T TIGR00438 90 IRER--VGDDKVDVVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKVF-QGEEIDEYLNELRKL 162 (188)
T ss_pred HHHH--hCCCCccEEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEEEc-cCccHHHHHHHHHhh
Confidence 1111 1345799999854321 1111 11223455555553 8999998533 33333 444444443
|
|
| >PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences | Back alignment and domain information |
|---|
Probab=98.41 E-value=1.6e-06 Score=84.72 Aligned_cols=112 Identities=20% Similarity=0.182 Sum_probs=70.0
Q ss_pred HHHHHHHHHHHHHHCCCCCCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCCCCceeechhh
Q 015771 12 LLFTLLVTESFARRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSI 91 (400)
Q Consensus 12 Ya~~~~vL~el~~rlp~~~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~~~~~~~~~~~ 91 (400)
-.+++-+|..|.+.. .++.+|||+|||+|.++++++.. ...+|+++|.++..++.|+..+....-...+...
T Consensus 145 H~TT~lcl~~l~~~~--~~g~~vLDvG~GSGILaiaA~kl---GA~~v~a~DiDp~Av~~a~~N~~~N~~~~~~~v~--- 216 (295)
T PF06325_consen 145 HPTTRLCLELLEKYV--KPGKRVLDVGCGSGILAIAAAKL---GAKKVVAIDIDPLAVEAARENAELNGVEDRIEVS--- 216 (295)
T ss_dssp CHHHHHHHHHHHHHS--STTSEEEEES-TTSHHHHHHHHT---TBSEEEEEESSCHHHHHHHHHHHHTT-TTCEEES---
T ss_pred CHHHHHHHHHHHHhc--cCCCEEEEeCCcHHHHHHHHHHc---CCCeEEEecCCHHHHHHHHHHHHHcCCCeeEEEE---
Confidence 355666777776653 34579999999999999988754 2468999999999999999887643211112110
Q ss_pred hHhhhhcccCCCcccEEeecccccCCCCHHHHHHHHHHHHh--ccCCeEEEE
Q 015771 92 QALNKDISKSEREHDLVIASYVLGEVPSLQDRITIVRQLWD--LTRDVLVLV 141 (400)
Q Consensus 92 ~~l~~~l~~~~~~~DLVias~~L~eL~~~~~r~~~i~~Lw~--~~gG~LVlV 141 (400)
... .....+||||+++-...-| ..++..+.+ ++||+||+.
T Consensus 217 --~~~--~~~~~~~dlvvANI~~~vL------~~l~~~~~~~l~~~G~lIlS 258 (295)
T PF06325_consen 217 --LSE--DLVEGKFDLVVANILADVL------LELAPDIASLLKPGGYLILS 258 (295)
T ss_dssp --CTS--CTCCS-EEEEEEES-HHHH------HHHHHHCHHHEEEEEEEEEE
T ss_pred --Eec--ccccccCCEEEECCCHHHH------HHHHHHHHHhhCCCCEEEEc
Confidence 111 1234789999986543322 233333332 279999974
|
Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A .... |
| >KOG2361 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.41 E-value=1.1e-06 Score=81.97 Aligned_cols=110 Identities=16% Similarity=0.273 Sum_probs=79.7
Q ss_pred CCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCCCCceeechhhhHhhh-hc--ccCCCcccE
Q 015771 31 PAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNK-DI--SKSEREHDL 107 (400)
Q Consensus 31 p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~~~~~~~~~~~~~l~~-~l--~~~~~~~DL 107 (400)
+.+||++|||.|..+|.+.+.-++...++++.|-|+.++++.++..... ....++. .-+++. .+ +...+.+|+
T Consensus 72 ~~~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~--e~~~~af--v~Dlt~~~~~~~~~~~svD~ 147 (264)
T KOG2361|consen 72 AETILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYD--ESRVEAF--VWDLTSPSLKEPPEEGSVDI 147 (264)
T ss_pred hhhheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccc--hhhhccc--ceeccchhccCCCCcCccce
Confidence 3489999999999999999888766689999999999999887754332 1111111 112221 11 235678999
Q ss_pred EeecccccCCCCHHHHHHHHHHHHhc--cCCeEEEEcCCC
Q 015771 108 VIASYVLGEVPSLQDRITIVRQLWDL--TRDVLVLVEPGT 145 (400)
Q Consensus 108 Vias~~L~eL~~~~~r~~~i~~Lw~~--~gG~LVlVE~Gt 145 (400)
|++-|+|+.++ ++.....+.+|.+. |||.|++-+-|.
T Consensus 148 it~IFvLSAi~-pek~~~a~~nl~~llKPGG~llfrDYg~ 186 (264)
T KOG2361|consen 148 ITLIFVLSAIH-PEKMQSVIKNLRTLLKPGGSLLFRDYGR 186 (264)
T ss_pred EEEEEEEeccC-hHHHHHHHHHHHHHhCCCcEEEEeeccc
Confidence 99999999997 66666666666553 999999887765
|
|
| >PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.41 E-value=2.6e-06 Score=79.10 Aligned_cols=97 Identities=18% Similarity=0.219 Sum_probs=64.6
Q ss_pred CCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCC--CCCceeechhhhHhhhhcccCCCcccE
Q 015771 30 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK--DLPLIHSYNSIQALNKDISKSEREHDL 107 (400)
Q Consensus 30 ~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~--~~~~~~~~~~~~~l~~~l~~~~~~~DL 107 (400)
...+|||+|||+|..+..++... .+++++|.|++|++.+++.++... ++.++.. +....++ ..++||+
T Consensus 78 ~~~~VLeiG~GsG~~t~~la~~~----~~v~~vd~~~~~~~~a~~~~~~~~~~~v~~~~~-----d~~~~~~-~~~~fD~ 147 (212)
T PRK00312 78 PGDRVLEIGTGSGYQAAVLAHLV----RRVFSVERIKTLQWEAKRRLKQLGLHNVSVRHG-----DGWKGWP-AYAPFDR 147 (212)
T ss_pred CCCEEEEECCCccHHHHHHHHHh----CEEEEEeCCHHHHHHHHHHHHHCCCCceEEEEC-----CcccCCC-cCCCcCE
Confidence 34799999999998776666543 379999999999999998876532 2222211 1111121 2368999
Q ss_pred EeecccccCCCCHHHHHHHHHHHHhccCCeEEEEcC
Q 015771 108 VIASYVLGEVPSLQDRITIVRQLWDLTRDVLVLVEP 143 (400)
Q Consensus 108 Vias~~L~eL~~~~~r~~~i~~Lw~~~gG~LVlVE~ 143 (400)
|++...+..++ ..+.++++ +||.|++.-.
T Consensus 148 I~~~~~~~~~~------~~l~~~L~-~gG~lv~~~~ 176 (212)
T PRK00312 148 ILVTAAAPEIP------RALLEQLK-EGGILVAPVG 176 (212)
T ss_pred EEEccCchhhh------HHHHHhcC-CCcEEEEEEc
Confidence 99998777664 12333443 7999988654
|
|
| >cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy) | Back alignment and domain information |
|---|
Probab=98.40 E-value=3.8e-06 Score=66.20 Aligned_cols=99 Identities=20% Similarity=0.261 Sum_probs=63.2
Q ss_pred eEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCC--CCCceeechhhhHhhhhcccCCCcccEEee
Q 015771 33 KVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK--DLPLIHSYNSIQALNKDISKSEREHDLVIA 110 (400)
Q Consensus 33 ~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~--~~~~~~~~~~~~~l~~~l~~~~~~~DLVia 110 (400)
+|||+|||+|..+..+.. . ...+++++|.++.+++.+++...... ...++.. +..........+||+|++
T Consensus 1 ~ildig~G~G~~~~~~~~-~--~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~d~i~~ 72 (107)
T cd02440 1 RVLDLGCGTGALALALAS-G--PGARVTGVDISPVALELARKAAAALLADNVEVLKG-----DAEELPPEADESFDVIIS 72 (107)
T ss_pred CeEEEcCCccHHHHHHhc-C--CCCEEEEEeCCHHHHHHHHHHHhcccccceEEEEc-----ChhhhccccCCceEEEEE
Confidence 589999999998888775 2 35799999999999998885332211 1222221 121111113467999999
Q ss_pred cccccCCCCHHHHHHHHHHHHh--ccCCeEEEE
Q 015771 111 SYVLGEVPSLQDRITIVRQLWD--LTRDVLVLV 141 (400)
Q Consensus 111 s~~L~eL~~~~~r~~~i~~Lw~--~~gG~LVlV 141 (400)
..+++.. ......+++.+.+ +++|.+++.
T Consensus 73 ~~~~~~~--~~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 73 DPPLHHL--VEDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred ccceeeh--hhHHHHHHHHHHHHcCCCCEEEEE
Confidence 9998873 2233344444443 278988875
|
There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.). |
| >TIGR00091 tRNA (guanine-N(7)-)-methyltransferase | Back alignment and domain information |
|---|
Probab=98.40 E-value=3.5e-06 Score=77.32 Aligned_cols=108 Identities=12% Similarity=0.120 Sum_probs=67.8
Q ss_pred CCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCC--CCCCceeechhhhHhhhhcccCCCcccEE
Q 015771 31 PAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGP--KDLPLIHSYNSIQALNKDISKSEREHDLV 108 (400)
Q Consensus 31 p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~--~~~~~~~~~~~~~~l~~~l~~~~~~~DLV 108 (400)
..+|||+|||+|..+.+++..+|+ ..+++||.|..|++.|+..+... .++.++... ..++.... ...+.+|.|
T Consensus 17 ~~~ilDiGcG~G~~~~~la~~~p~--~~v~gvD~~~~~l~~a~~~~~~~~l~ni~~i~~d--~~~~~~~~-~~~~~~d~v 91 (194)
T TIGR00091 17 APLHLEIGCGKGRFLIDMAKQNPD--KNFLGIEIHTPIVLAANNKANKLGLKNLHVLCGD--ANELLDKF-FPDGSLSKV 91 (194)
T ss_pred CceEEEeCCCccHHHHHHHHhCCC--CCEEEEEeeHHHHHHHHHHHHHhCCCCEEEEccC--HHHHHHhh-CCCCceeEE
Confidence 468999999999999998888763 58999999999999988776543 233222221 11111111 133579999
Q ss_pred eecccccCCCCHH--HH---HHHHHHHHhc--cCCeEEEEcC
Q 015771 109 IASYVLGEVPSLQ--DR---ITIVRQLWDL--TRDVLVLVEP 143 (400)
Q Consensus 109 ias~~L~eL~~~~--~r---~~~i~~Lw~~--~gG~LVlVE~ 143 (400)
++.+...+..... .| ..+++.+.+. +||.|++.-.
T Consensus 92 ~~~~pdpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~td 133 (194)
T TIGR00091 92 FLNFPDPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKTD 133 (194)
T ss_pred EEECCCcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEeC
Confidence 9887544322110 11 2344444432 7999988753
|
In E. coli, this protein flanks the DNA repair protein MutY, also called micA. |
| >COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.37 E-value=3.7e-07 Score=84.47 Aligned_cols=97 Identities=23% Similarity=0.293 Sum_probs=68.4
Q ss_pred CeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCCCCceeechhhhHhhhhcc-cCCCcccEEee
Q 015771 32 AKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDIS-KSEREHDLVIA 110 (400)
Q Consensus 32 ~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~~~~~~~~~~~~~l~~~l~-~~~~~~DLVia 110 (400)
.++||+|||||..--++.+ ....+++||+|.+|++.|... ...+ ... ..++...++ ....+||||++
T Consensus 127 ~~~lDLGCGTGL~G~~lR~----~a~~ltGvDiS~nMl~kA~eK--g~YD-~L~-----~Aea~~Fl~~~~~er~DLi~A 194 (287)
T COG4976 127 RRMLDLGCGTGLTGEALRD----MADRLTGVDISENMLAKAHEK--GLYD-TLY-----VAEAVLFLEDLTQERFDLIVA 194 (287)
T ss_pred ceeeecccCcCcccHhHHH----HHhhccCCchhHHHHHHHHhc--cchH-HHH-----HHHHHHHhhhccCCcccchhh
Confidence 6899999999988777764 345789999999999988652 1100 000 111111111 24578999999
Q ss_pred cccccCCCCHHHHHHHHHHHHhccCCeEEEE
Q 015771 111 SYVLGEVPSLQDRITIVRQLWDLTRDVLVLV 141 (400)
Q Consensus 111 s~~L~eL~~~~~r~~~i~~Lw~~~gG~LVlV 141 (400)
+-||..|.+.+.....+..+++ +||.+.+.
T Consensus 195 aDVl~YlG~Le~~~~~aa~~L~-~gGlfaFS 224 (287)
T COG4976 195 ADVLPYLGALEGLFAGAAGLLA-PGGLFAFS 224 (287)
T ss_pred hhHHHhhcchhhHHHHHHHhcC-CCceEEEE
Confidence 9999999877766677777775 79988875
|
|
| >TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific | Back alignment and domain information |
|---|
Probab=98.37 E-value=7.3e-06 Score=77.50 Aligned_cols=73 Identities=21% Similarity=0.353 Sum_probs=52.5
Q ss_pred CCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCC--CCCceeechhhhHhhhhcccCCCcccE
Q 015771 30 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK--DLPLIHSYNSIQALNKDISKSEREHDL 107 (400)
Q Consensus 30 ~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~--~~~~~~~~~~~~~l~~~l~~~~~~~DL 107 (400)
.+.+|||+|||+|..+++++..++. .+++++|.|+.|++.++..+.... ++.++. .+.... ...++||+
T Consensus 87 ~~~~ilDig~G~G~~~~~l~~~~~~--~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~-----~d~~~~--~~~~~fD~ 157 (251)
T TIGR03534 87 GPLRVLDLGTGSGAIALALAKERPD--ARVTAVDISPEALAVARKNAARLGLDNVTFLQ-----SDWFEP--LPGGKFDL 157 (251)
T ss_pred CCCeEEEEeCcHhHHHHHHHHHCCC--CEEEEEECCHHHHHHHHHHHHHcCCCeEEEEE-----Cchhcc--CcCCceeE
Confidence 3468999999999999999987763 589999999999999998876432 122221 122111 23468999
Q ss_pred Eeec
Q 015771 108 VIAS 111 (400)
Q Consensus 108 Vias 111 (400)
|+++
T Consensus 158 Vi~n 161 (251)
T TIGR03534 158 IVSN 161 (251)
T ss_pred EEEC
Confidence 9984
|
Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3. |
| >PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.32 E-value=6.2e-06 Score=79.28 Aligned_cols=73 Identities=22% Similarity=0.378 Sum_probs=51.6
Q ss_pred CCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhc-CC-CCCCceeechhhhHhhhhcccCCCcccE
Q 015771 30 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQ-GP-KDLPLIHSYNSIQALNKDISKSEREHDL 107 (400)
Q Consensus 30 ~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~-~~-~~~~~~~~~~~~~~l~~~l~~~~~~~DL 107 (400)
.+.+|||+|||+|..+.+++..++ ..+++++|.|+.|++.++..+. .. .++.++.. ++...+ ..++||+
T Consensus 108 ~~~~vLDiG~GsG~~~~~la~~~~--~~~v~~iDis~~~l~~a~~n~~~~~~~~i~~~~~-----d~~~~~--~~~~fD~ 178 (275)
T PRK09328 108 EPLRVLDLGTGSGAIALALAKERP--DAEVTAVDISPEALAVARRNAKHGLGARVEFLQG-----DWFEPL--PGGRFDL 178 (275)
T ss_pred CCCEEEEEcCcHHHHHHHHHHHCC--CCEEEEEECCHHHHHHHHHHHHhCCCCcEEEEEc-----cccCcC--CCCceeE
Confidence 457999999999999988887775 3589999999999999999876 11 11222211 121111 2368999
Q ss_pred Eeec
Q 015771 108 VIAS 111 (400)
Q Consensus 108 Vias 111 (400)
|+++
T Consensus 179 Iv~n 182 (275)
T PRK09328 179 IVSN 182 (275)
T ss_pred EEEC
Confidence 9985
|
|
| >PRK00811 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.31 E-value=7.3e-06 Score=79.77 Aligned_cols=112 Identities=21% Similarity=0.278 Sum_probs=66.7
Q ss_pred CCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCC----CCCceeechhhhHhhhhcccCCCcc
Q 015771 30 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK----DLPLIHSYNSIQALNKDISKSEREH 105 (400)
Q Consensus 30 ~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~----~~~~~~~~~~~~~l~~~l~~~~~~~ 105 (400)
+|.+||++|||.|..+..+.... ...+|++||+++.|+++|++.+.... +-+.+... ..+....+....++|
T Consensus 76 ~p~~VL~iG~G~G~~~~~~l~~~--~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~--~~Da~~~l~~~~~~y 151 (283)
T PRK00811 76 NPKRVLIIGGGDGGTLREVLKHP--SVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELV--IGDGIKFVAETENSF 151 (283)
T ss_pred CCCEEEEEecCchHHHHHHHcCC--CCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEE--ECchHHHHhhCCCcc
Confidence 57899999999999988776432 35689999999999999999875321 11222110 112221222235689
Q ss_pred cEEeecccccCCCCH----HHHHHHHHHHHhccCCeEEEEcCCCCC
Q 015771 106 DLVIASYVLGEVPSL----QDRITIVRQLWDLTRDVLVLVEPGTPQ 147 (400)
Q Consensus 106 DLVias~~L~eL~~~----~~r~~~i~~Lw~~~gG~LVlVE~Gtp~ 147 (400)
|+|++...-...+.. .+-.+.++++++ +||++|+- .+.|.
T Consensus 152 DvIi~D~~dp~~~~~~l~t~ef~~~~~~~L~-~gGvlv~~-~~~~~ 195 (283)
T PRK00811 152 DVIIVDSTDPVGPAEGLFTKEFYENCKRALK-EDGIFVAQ-SGSPF 195 (283)
T ss_pred cEEEECCCCCCCchhhhhHHHHHHHHHHhcC-CCcEEEEe-CCCcc
Confidence 999985432222111 112233444443 79988753 44443
|
|
| >smart00650 rADc Ribosomal RNA adenine dimethylases | Back alignment and domain information |
|---|
Probab=98.30 E-value=4.3e-06 Score=74.92 Aligned_cols=72 Identities=18% Similarity=0.236 Sum_probs=50.0
Q ss_pred CCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCCCCceeechhhhHhhhhcccCCCcccEEee
Q 015771 31 PAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDISKSEREHDLVIA 110 (400)
Q Consensus 31 p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~~~~~~~~~~~~~l~~~l~~~~~~~DLVia 110 (400)
..+|||+|||+|..+..+++. ..+++++|.|+.|++.+++.+....++..++. +.. .++.....||+|++
T Consensus 14 ~~~vLEiG~G~G~lt~~l~~~----~~~v~~vE~~~~~~~~~~~~~~~~~~v~ii~~-----D~~-~~~~~~~~~d~vi~ 83 (169)
T smart00650 14 GDTVLEIGPGKGALTEELLER----AARVTAIEIDPRLAPRLREKFAAADNLTVIHG-----DAL-KFDLPKLQPYKVVG 83 (169)
T ss_pred cCEEEEECCCccHHHHHHHhc----CCeEEEEECCHHHHHHHHHHhccCCCEEEEEC-----chh-cCCccccCCCEEEE
Confidence 368999999999999888753 35899999999999999988764333333322 121 12223346898877
Q ss_pred cc
Q 015771 111 SY 112 (400)
Q Consensus 111 s~ 112 (400)
+-
T Consensus 84 n~ 85 (169)
T smart00650 84 NL 85 (169)
T ss_pred CC
Confidence 53
|
|
| >PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2 | Back alignment and domain information |
|---|
Probab=98.28 E-value=3.6e-06 Score=78.32 Aligned_cols=98 Identities=18% Similarity=0.252 Sum_probs=66.4
Q ss_pred CeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCC--CCCceeechhhhHhhhhcccCCCcccEEe
Q 015771 32 AKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK--DLPLIHSYNSIQALNKDISKSEREHDLVI 109 (400)
Q Consensus 32 ~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~--~~~~~~~~~~~~~l~~~l~~~~~~~DLVi 109 (400)
.+|||+|||+|-.+-.++...+ ....|++||..+.+.+.|+..+.... ++.++.. +.....+ ...+||.|+
T Consensus 74 ~~VLeIGtGsGY~aAlla~lvg-~~g~Vv~vE~~~~l~~~A~~~l~~~~~~nv~~~~g-----dg~~g~~-~~apfD~I~ 146 (209)
T PF01135_consen 74 DRVLEIGTGSGYQAALLAHLVG-PVGRVVSVERDPELAERARRNLARLGIDNVEVVVG-----DGSEGWP-EEAPFDRII 146 (209)
T ss_dssp -EEEEES-TTSHHHHHHHHHHS-TTEEEEEEESBHHHHHHHHHHHHHHTTHSEEEEES------GGGTTG-GG-SEEEEE
T ss_pred CEEEEecCCCcHHHHHHHHhcC-ccceEEEECccHHHHHHHHHHHHHhccCceeEEEc-----chhhccc-cCCCcCEEE
Confidence 7999999999988777777665 35689999999999999999987532 2222222 2222222 346899999
Q ss_pred ecccccCCCCHHHHHHHHHHHHhccCCeEEEEcC
Q 015771 110 ASYVLGEVPSLQDRITIVRQLWDLTRDVLVLVEP 143 (400)
Q Consensus 110 as~~L~eL~~~~~r~~~i~~Lw~~~gG~LVlVE~ 143 (400)
++....++|. .++++| ++||.||+.-.
T Consensus 147 v~~a~~~ip~-----~l~~qL--~~gGrLV~pi~ 173 (209)
T PF01135_consen 147 VTAAVPEIPE-----ALLEQL--KPGGRLVAPIG 173 (209)
T ss_dssp ESSBBSS--H-----HHHHTE--EEEEEEEEEES
T ss_pred EeeccchHHH-----HHHHhc--CCCcEEEEEEc
Confidence 9999988862 355554 37999998544
|
1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A .... |
| >PRK07402 precorrin-6B methylase; Provisional | Back alignment and domain information |
|---|
Probab=98.27 E-value=1e-05 Score=74.12 Aligned_cols=100 Identities=16% Similarity=0.189 Sum_probs=61.1
Q ss_pred CCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCC--CCCceeechhhhHhhhhcccCCCcccE
Q 015771 30 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK--DLPLIHSYNSIQALNKDISKSEREHDL 107 (400)
Q Consensus 30 ~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~--~~~~~~~~~~~~~l~~~l~~~~~~~DL 107 (400)
...+|||+|||+|..+..++...+ ..+++++|.|+.|++.++..++... ++.++.. +....+......+|.
T Consensus 40 ~~~~VLDiG~G~G~~~~~la~~~~--~~~V~~vD~s~~~~~~a~~n~~~~~~~~v~~~~~-----d~~~~~~~~~~~~d~ 112 (196)
T PRK07402 40 PDSVLWDIGAGTGTIPVEAGLLCP--KGRVIAIERDEEVVNLIRRNCDRFGVKNVEVIEG-----SAPECLAQLAPAPDR 112 (196)
T ss_pred CCCEEEEeCCCCCHHHHHHHHHCC--CCEEEEEeCCHHHHHHHHHHHHHhCCCCeEEEEC-----chHHHHhhCCCCCCE
Confidence 347999999999998887776554 3689999999999999998775432 2222221 111111111224566
Q ss_pred EeecccccCCCCHHHHHHHHHHHHhc--cCCeEEEEcC
Q 015771 108 VIASYVLGEVPSLQDRITIVRQLWDL--TRDVLVLVEP 143 (400)
Q Consensus 108 Vias~~L~eL~~~~~r~~~i~~Lw~~--~gG~LVlVE~ 143 (400)
|+.... ... ..+++++++. +||.+++..+
T Consensus 113 v~~~~~----~~~---~~~l~~~~~~LkpgG~li~~~~ 143 (196)
T PRK07402 113 VCIEGG----RPI---KEILQAVWQYLKPGGRLVATAS 143 (196)
T ss_pred EEEECC----cCH---HHHHHHHHHhcCCCeEEEEEee
Confidence 654321 112 2344554443 7999998865
|
|
| >PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.26 E-value=7.9e-06 Score=80.89 Aligned_cols=99 Identities=16% Similarity=0.134 Sum_probs=65.4
Q ss_pred CCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCC--CCCceeechhhhHhhhhcccCCCcccE
Q 015771 30 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK--DLPLIHSYNSIQALNKDISKSEREHDL 107 (400)
Q Consensus 30 ~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~--~~~~~~~~~~~~~l~~~l~~~~~~~DL 107 (400)
...+|||+|||+|..+..+++..+ ....|+++|.|++|++.|+..++..+ ++..+. .+..... .....||+
T Consensus 80 ~g~~VLDIG~GtG~~a~~LA~~~~-~~g~VvgVDis~~~l~~Ar~~l~~~g~~nV~~i~-----gD~~~~~-~~~~~fD~ 152 (322)
T PRK13943 80 KGMRVLEIGGGTGYNAAVMSRVVG-EKGLVVSVEYSRKICEIAKRNVRRLGIENVIFVC-----GDGYYGV-PEFAPYDV 152 (322)
T ss_pred CCCEEEEEeCCccHHHHHHHHhcC-CCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEe-----CChhhcc-cccCCccE
Confidence 347999999999998888777664 23469999999999999998776432 222221 1222111 12357999
Q ss_pred EeecccccCCCCHHHHHHHHHHHHhccCCeEEEEc
Q 015771 108 VIASYVLGEVPSLQDRITIVRQLWDLTRDVLVLVE 142 (400)
Q Consensus 108 Vias~~L~eL~~~~~r~~~i~~Lw~~~gG~LVlVE 142 (400)
|+++..+.+++. .+++ .+ ++||.+++..
T Consensus 153 Ii~~~g~~~ip~-----~~~~-~L-kpgG~Lvv~~ 180 (322)
T PRK13943 153 IFVTVGVDEVPE-----TWFT-QL-KEGGRVIVPI 180 (322)
T ss_pred EEECCchHHhHH-----HHHH-hc-CCCCEEEEEe
Confidence 999987766542 1232 23 3799888754
|
|
| >TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific | Back alignment and domain information |
|---|
Probab=98.26 E-value=1.3e-05 Score=78.18 Aligned_cols=73 Identities=22% Similarity=0.332 Sum_probs=52.4
Q ss_pred CCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCC---CCCceeechhhhHhhhhcccCCCccc
Q 015771 30 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK---DLPLIHSYNSIQALNKDISKSEREHD 106 (400)
Q Consensus 30 ~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~---~~~~~~~~~~~~~l~~~l~~~~~~~D 106 (400)
.+.+|||+|||+|..+.+++..++ ..+++++|.|+.|++.|+..+.... ++.++.. ++...+ ...+||
T Consensus 121 ~~~~vLDlG~GsG~i~~~la~~~~--~~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~-----D~~~~~--~~~~fD 191 (284)
T TIGR03533 121 PVKRILDLCTGSGCIAIACAYAFP--EAEVDAVDISPDALAVAEINIERHGLEDRVTLIQS-----DLFAAL--PGRKYD 191 (284)
T ss_pred CCCEEEEEeCchhHHHHHHHHHCC--CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEC-----chhhcc--CCCCcc
Confidence 346899999999999999887765 3589999999999999999886432 1222221 222222 234799
Q ss_pred EEeec
Q 015771 107 LVIAS 111 (400)
Q Consensus 107 LVias 111 (400)
+|++.
T Consensus 192 ~Iv~N 196 (284)
T TIGR03533 192 LIVSN 196 (284)
T ss_pred EEEEC
Confidence 99985
|
Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors. |
| >PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.25 E-value=1.8e-05 Score=80.42 Aligned_cols=72 Identities=18% Similarity=0.275 Sum_probs=50.9
Q ss_pred CeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCC-CCCceeechhhhHhhh-hcccCCCcccEEe
Q 015771 32 AKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK-DLPLIHSYNSIQALNK-DISKSEREHDLVI 109 (400)
Q Consensus 32 ~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~-~~~~~~~~~~~~~l~~-~l~~~~~~~DLVi 109 (400)
.+|||+|||+|..+.+++...+ ..+++++|.|+.|++.|++.++... ++.++.. ++.. ..+ ..++||+|+
T Consensus 253 ~rVLDLGcGSG~IaiaLA~~~p--~a~VtAVDiS~~ALe~AreNa~~~g~rV~fi~g-----Dl~e~~l~-~~~~FDLIV 324 (423)
T PRK14966 253 GRVWDLGTGSGAVAVTVALERP--DAFVRASDISPPALETARKNAADLGARVEFAHG-----SWFDTDMP-SEGKWDIIV 324 (423)
T ss_pred CEEEEEeChhhHHHHHHHHhCC--CCEEEEEECCHHHHHHHHHHHHHcCCcEEEEEc-----chhccccc-cCCCccEEE
Confidence 5899999999999888876664 3589999999999999999886532 1222221 2211 111 235799999
Q ss_pred ec
Q 015771 110 AS 111 (400)
Q Consensus 110 as 111 (400)
++
T Consensus 325 SN 326 (423)
T PRK14966 325 SN 326 (423)
T ss_pred EC
Confidence 94
|
|
| >PTZ00146 fibrillarin; Provisional | Back alignment and domain information |
|---|
Probab=98.25 E-value=8.1e-06 Score=79.29 Aligned_cols=104 Identities=14% Similarity=0.091 Sum_probs=61.2
Q ss_pred CeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCCCCceeechhhhHhhhhcccCCCcccEEeec
Q 015771 32 AKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDISKSEREHDLVIAS 111 (400)
Q Consensus 32 ~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~~~~~~~~~~~~~l~~~l~~~~~~~DLVias 111 (400)
.+|||+|||||+.+..+++..+. ...|++||.|+.|++.....+....|+..+...... ..........+|+|++.
T Consensus 134 ~~VLDLGaG~G~~t~~lAdiVG~-~G~VyAVD~s~r~~~dLl~~ak~r~NI~~I~~Da~~---p~~y~~~~~~vDvV~~D 209 (293)
T PTZ00146 134 SKVLYLGAASGTTVSHVSDLVGP-EGVVYAVEFSHRSGRDLTNMAKKRPNIVPIIEDARY---PQKYRMLVPMVDVIFAD 209 (293)
T ss_pred CEEEEeCCcCCHHHHHHHHHhCC-CCEEEEEECcHHHHHHHHHHhhhcCCCEEEECCccC---hhhhhcccCCCCEEEEe
Confidence 69999999999999998887753 358999999997654333333222344333221100 00111123479999888
Q ss_pred ccccCCCCHHHH-HHHHHHHHhccCCeEEEEcC
Q 015771 112 YVLGEVPSLQDR-ITIVRQLWDLTRDVLVLVEP 143 (400)
Q Consensus 112 ~~L~eL~~~~~r-~~~i~~Lw~~~gG~LVlVE~ 143 (400)
.. .++.... ...+..++ +++|.|+|..+
T Consensus 210 va---~pdq~~il~~na~r~L-KpGG~~vI~ik 238 (293)
T PTZ00146 210 VA---QPDQARIVALNAQYFL-KNGGHFIISIK 238 (293)
T ss_pred CC---CcchHHHHHHHHHHhc-cCCCEEEEEEe
Confidence 74 2332211 11233444 38999999543
|
|
| >TIGR00417 speE spermidine synthase | Back alignment and domain information |
|---|
Probab=98.24 E-value=1.5e-05 Score=77.04 Aligned_cols=107 Identities=18% Similarity=0.268 Sum_probs=64.4
Q ss_pred CCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCC---CCceeechhhhHhhhhcccCCCccc
Q 015771 30 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKD---LPLIHSYNSIQALNKDISKSEREHD 106 (400)
Q Consensus 30 ~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~---~~~~~~~~~~~~l~~~l~~~~~~~D 106 (400)
+|.+||++|||+|..+..+.... ...+++++|+++++++.+++.+..... .+.+... ..+....+....++||
T Consensus 72 ~p~~VL~iG~G~G~~~~~ll~~~--~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~--~~D~~~~l~~~~~~yD 147 (270)
T TIGR00417 72 NPKHVLVIGGGDGGVLREVLKHK--SVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQ--IDDGFKFLADTENTFD 147 (270)
T ss_pred CCCEEEEEcCCchHHHHHHHhCC--CcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEE--ECchHHHHHhCCCCcc
Confidence 57899999999999887766432 246899999999999999987754211 1111110 0111111112246899
Q ss_pred EEeecccccCCCC----HHHHHHHHHHHHhccCCeEEEE
Q 015771 107 LVIASYVLGEVPS----LQDRITIVRQLWDLTRDVLVLV 141 (400)
Q Consensus 107 LVias~~L~eL~~----~~~r~~~i~~Lw~~~gG~LVlV 141 (400)
+||+......-+. ..+-.+.+.++++ +||.+++.
T Consensus 148 vIi~D~~~~~~~~~~l~~~ef~~~~~~~L~-pgG~lv~~ 185 (270)
T TIGR00417 148 VIIVDSTDPVGPAETLFTKEFYELLKKALN-EDGIFVAQ 185 (270)
T ss_pred EEEEeCCCCCCcccchhHHHHHHHHHHHhC-CCcEEEEc
Confidence 9998654222111 1122234444443 79999987
|
the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM. |
| >COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=98.24 E-value=7.2e-06 Score=74.20 Aligned_cols=97 Identities=16% Similarity=0.165 Sum_probs=67.7
Q ss_pred CCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCCCCceeechhhhHhhhhcccCCCcccEEee
Q 015771 31 PAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDISKSEREHDLVIA 110 (400)
Q Consensus 31 p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~~~~~~~~~~~~~l~~~l~~~~~~~DLVia 110 (400)
..+++|||||+|+.+..++-..| ..+++++|.++++++..++.++... .+.+... ..+....++.. ..+|.|+.
T Consensus 35 g~~l~DIGaGtGsi~iE~a~~~p--~~~v~AIe~~~~a~~~~~~N~~~fg-~~n~~vv--~g~Ap~~L~~~-~~~daiFI 108 (187)
T COG2242 35 GDRLWDIGAGTGSITIEWALAGP--SGRVIAIERDEEALELIERNAARFG-VDNLEVV--EGDAPEALPDL-PSPDAIFI 108 (187)
T ss_pred CCEEEEeCCCccHHHHHHHHhCC--CceEEEEecCHHHHHHHHHHHHHhC-CCcEEEE--eccchHhhcCC-CCCCEEEE
Confidence 36999999999999988775554 5799999999999999999888764 3332211 01112223222 27999999
Q ss_pred cccccCCCCHHHHHHHHHHHHhc--cCCeEEE
Q 015771 111 SYVLGEVPSLQDRITIVRQLWDL--TRDVLVL 140 (400)
Q Consensus 111 s~~L~eL~~~~~r~~~i~~Lw~~--~gG~LVl 140 (400)
.-. ..++ .+++..|.+ +||.||+
T Consensus 109 GGg-~~i~------~ile~~~~~l~~ggrlV~ 133 (187)
T COG2242 109 GGG-GNIE------EILEAAWERLKPGGRLVA 133 (187)
T ss_pred CCC-CCHH------HHHHHHHHHcCcCCeEEE
Confidence 887 4443 466777764 7888884
|
|
| >PRK14968 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.23 E-value=2e-05 Score=70.99 Aligned_cols=104 Identities=13% Similarity=0.113 Sum_probs=65.5
Q ss_pred CCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCC--C--CCceeechhhhHhhhhcccCCCcc
Q 015771 30 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK--D--LPLIHSYNSIQALNKDISKSEREH 105 (400)
Q Consensus 30 ~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~--~--~~~~~~~~~~~~l~~~l~~~~~~~ 105 (400)
+..+|||+|||+|..+..++.. ..+++++|.|+.|++.+++.+.... + ...+.. ++...+ ....|
T Consensus 23 ~~~~vLd~G~G~G~~~~~l~~~----~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~-----d~~~~~--~~~~~ 91 (188)
T PRK14968 23 KGDRVLEVGTGSGIVAIVAAKN----GKKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRS-----DLFEPF--RGDKF 91 (188)
T ss_pred CCCEEEEEccccCHHHHHHHhh----cceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEec-----cccccc--cccCc
Confidence 4478999999999988877754 3689999999999999987765321 1 222211 121112 23479
Q ss_pred cEEeecccccCCCC------------------HHHHHHHHHHHHhc--cCCeEEEEcCC
Q 015771 106 DLVIASYVLGEVPS------------------LQDRITIVRQLWDL--TRDVLVLVEPG 144 (400)
Q Consensus 106 DLVias~~L~eL~~------------------~~~r~~~i~~Lw~~--~gG~LVlVE~G 144 (400)
|+|+++..+..... ......+++++++. +||.++++.+.
T Consensus 92 d~vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~~ 150 (188)
T PRK14968 92 DVILFNPPYLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQSS 150 (188)
T ss_pred eEEEECCCcCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEcc
Confidence 99998755432110 11123455555543 79998887654
|
|
| >KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.23 E-value=4.7e-06 Score=76.86 Aligned_cols=102 Identities=24% Similarity=0.249 Sum_probs=67.1
Q ss_pred CCCCCCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHH-hhcCCCCCCceeechhhhHhhhhcccCCCc
Q 015771 26 LPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQS-LMQGPKDLPLIHSYNSIQALNKDISKSERE 104 (400)
Q Consensus 26 lp~~~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~-ll~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 104 (400)
+|+-.+.-|||||||+|...-.+. +....+++||+|+.|++.|.. .++ .+ ++ +.++-..+|+..++
T Consensus 46 lp~~~~~~iLDIGCGsGLSg~vL~----~~Gh~wiGvDiSpsML~~a~~~e~e--gd--li-----l~DMG~GlpfrpGt 112 (270)
T KOG1541|consen 46 LPGPKSGLILDIGCGSGLSGSVLS----DSGHQWIGVDISPSMLEQAVERELE--GD--LI-----LCDMGEGLPFRPGT 112 (270)
T ss_pred CCCCCCcEEEEeccCCCcchheec----cCCceEEeecCCHHHHHHHHHhhhh--cC--ee-----eeecCCCCCCCCCc
Confidence 355467889999999997753333 456789999999999999985 222 12 12 12344567778899
Q ss_pred ccEEeecccccCCCC-------HHHHH-HHHHHHHhc--cCCeEEE
Q 015771 105 HDLVIASYVLGEVPS-------LQDRI-TIVRQLWDL--TRDVLVL 140 (400)
Q Consensus 105 ~DLVias~~L~eL~~-------~~~r~-~~i~~Lw~~--~gG~LVl 140 (400)
||-||+-.++.+|-+ +..|+ .++..|... .++..|+
T Consensus 113 FDg~ISISAvQWLcnA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~ 158 (270)
T KOG1541|consen 113 FDGVISISAVQWLCNADKSLHVPKKRLLRFFGTLYSCLKRGARAVL 158 (270)
T ss_pred cceEEEeeeeeeecccCccccChHHHHHHHhhhhhhhhccCceeEE
Confidence 999988766665532 33443 355556653 3555554
|
|
| >COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.23 E-value=1.5e-05 Score=73.52 Aligned_cols=96 Identities=21% Similarity=0.270 Sum_probs=71.3
Q ss_pred CCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCC--CCCceeechhhhHhhhhcccCCCcccEE
Q 015771 31 PAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK--DLPLIHSYNSIQALNKDISKSEREHDLV 108 (400)
Q Consensus 31 p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~--~~~~~~~~~~~~~l~~~l~~~~~~~DLV 108 (400)
+.+||+||||+|-.+-.++++- .+|+.||..+++.+.|++.++... |+..++ .|-....+ ...+||.|
T Consensus 73 g~~VLEIGtGsGY~aAvla~l~----~~V~siEr~~~L~~~A~~~L~~lg~~nV~v~~-----gDG~~G~~-~~aPyD~I 142 (209)
T COG2518 73 GDRVLEIGTGSGYQAAVLARLV----GRVVSIERIEELAEQARRNLETLGYENVTVRH-----GDGSKGWP-EEAPYDRI 142 (209)
T ss_pred CCeEEEECCCchHHHHHHHHHh----CeEEEEEEcHHHHHHHHHHHHHcCCCceEEEE-----CCcccCCC-CCCCcCEE
Confidence 3799999999997766666544 389999999999999999987653 222222 22222222 45789999
Q ss_pred eecccccCCCCHHHHHHHHHHHHhccCCeEEEEcC
Q 015771 109 IASYVLGEVPSLQDRITIVRQLWDLTRDVLVLVEP 143 (400)
Q Consensus 109 ias~~L~eL~~~~~r~~~i~~Lw~~~gG~LVlVE~ 143 (400)
+++-...++|. .++++| ++||.||+..-
T Consensus 143 ~Vtaaa~~vP~-----~Ll~QL--~~gGrlv~PvG 170 (209)
T COG2518 143 IVTAAAPEVPE-----ALLDQL--KPGGRLVIPVG 170 (209)
T ss_pred EEeeccCCCCH-----HHHHhc--ccCCEEEEEEc
Confidence 99999999983 467777 47999998876
|
|
| >PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.22 E-value=1.5e-05 Score=78.50 Aligned_cols=71 Identities=23% Similarity=0.339 Sum_probs=51.8
Q ss_pred CeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCC---CCCceeechhhhHhhhhcccCCCcccEE
Q 015771 32 AKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK---DLPLIHSYNSIQALNKDISKSEREHDLV 108 (400)
Q Consensus 32 ~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~---~~~~~~~~~~~~~l~~~l~~~~~~~DLV 108 (400)
.+|||+|||+|..+.+++..++ ..+++++|.|+.|++.|+..++..+ .+.++.. ++...+ +..+||+|
T Consensus 135 ~~VLDlG~GsG~iai~la~~~p--~~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~-----D~~~~l--~~~~fDlI 205 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAFP--DAEVDAVDISPDALAVAEINIERHGLEDRVTLIES-----DLFAAL--PGRRYDLI 205 (307)
T ss_pred CEEEEEechhhHHHHHHHHHCC--CCEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEEC-----chhhhC--CCCCccEE
Confidence 6899999999999998887765 3689999999999999999886432 1222221 222222 23579999
Q ss_pred eec
Q 015771 109 IAS 111 (400)
Q Consensus 109 ias 111 (400)
++.
T Consensus 206 vsN 208 (307)
T PRK11805 206 VSN 208 (307)
T ss_pred EEC
Confidence 985
|
|
| >PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes | Back alignment and domain information |
|---|
Probab=98.19 E-value=1.1e-05 Score=76.55 Aligned_cols=95 Identities=18% Similarity=0.280 Sum_probs=67.4
Q ss_pred CCCCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCCCCceeechhhhHhhhhcccCCCcccE
Q 015771 28 GFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDISKSEREHDL 107 (400)
Q Consensus 28 ~~~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~~~~~~~~~~~~~l~~~l~~~~~~~DL 107 (400)
+++..++||+|+|-|..+..++..|. +|++.|.|..|....++ + +...+.. .++. ....+||+
T Consensus 92 ~~~~~~lLDlGAGdG~VT~~l~~~f~----~v~aTE~S~~Mr~rL~~--k---g~~vl~~----~~w~----~~~~~fDv 154 (265)
T PF05219_consen 92 DWKDKSLLDLGAGDGEVTERLAPLFK----EVYATEASPPMRWRLSK--K---GFTVLDI----DDWQ----QTDFKFDV 154 (265)
T ss_pred cccCCceEEecCCCcHHHHHHHhhcc----eEEeecCCHHHHHHHHh--C---CCeEEeh----hhhh----ccCCceEE
Confidence 45667899999999999988886654 79999999999765544 1 2222221 1121 13458999
Q ss_pred EeecccccCCCCHHHHHHHHHHHHhccCCeEEE
Q 015771 108 VIASYVLGEVPSLQDRITIVRQLWDLTRDVLVL 140 (400)
Q Consensus 108 Vias~~L~eL~~~~~r~~~i~~Lw~~~gG~LVl 140 (400)
|.|-|+|.--..+...+.-+++.++ |+|.|||
T Consensus 155 IscLNvLDRc~~P~~LL~~i~~~l~-p~G~lil 186 (265)
T PF05219_consen 155 ISCLNVLDRCDRPLTLLRDIRRALK-PNGRLIL 186 (265)
T ss_pred EeehhhhhccCCHHHHHHHHHHHhC-CCCEEEE
Confidence 9999999887767665555666553 7998885
|
The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases. |
| >TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific | Back alignment and domain information |
|---|
Probab=98.19 E-value=3.5e-05 Score=73.71 Aligned_cols=73 Identities=14% Similarity=0.138 Sum_probs=51.0
Q ss_pred CCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCCCCceeechhhhHhhhhccc-CCCcccEEe
Q 015771 31 PAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDISK-SEREHDLVI 109 (400)
Q Consensus 31 p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~~~~~~~~~~~~~l~~~l~~-~~~~~DLVi 109 (400)
+.+|||+|||+|..+.+++..++ ..+++++|.|+.|++.|+..+.... ..++.. ++...++. ..++||+|+
T Consensus 87 ~~~vLDlg~GsG~i~l~la~~~~--~~~v~~vDis~~al~~A~~N~~~~~-~~~~~~-----D~~~~l~~~~~~~fDlVv 158 (251)
T TIGR03704 87 TLVVVDLCCGSGAVGAALAAALD--GIELHAADIDPAAVRCARRNLADAG-GTVHEG-----DLYDALPTALRGRVDILA 158 (251)
T ss_pred CCEEEEecCchHHHHHHHHHhCC--CCEEEEEECCHHHHHHHHHHHHHcC-CEEEEe-----echhhcchhcCCCEeEEE
Confidence 35899999999999998887665 2589999999999999998876432 222221 12111111 135799999
Q ss_pred ec
Q 015771 110 AS 111 (400)
Q Consensus 110 as 111 (400)
+.
T Consensus 159 ~N 160 (251)
T TIGR03704 159 AN 160 (251)
T ss_pred EC
Confidence 85
|
This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown. |
| >PRK01581 speE spermidine synthase; Validated | Back alignment and domain information |
|---|
Probab=98.18 E-value=2.5e-05 Score=78.05 Aligned_cols=113 Identities=16% Similarity=0.196 Sum_probs=64.6
Q ss_pred CCCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHh--hcCC---C-CCCceeechhhhHhhhhcccCC
Q 015771 29 FSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSL--MQGP---K-DLPLIHSYNSIQALNKDISKSE 102 (400)
Q Consensus 29 ~~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~l--l~~~---~-~~~~~~~~~~~~~l~~~l~~~~ 102 (400)
-+|.+||++|||.|.++..+... + ...++++||++++|+++|+.. +... . +.+.+... ..+....+....
T Consensus 149 ~~PkrVLIIGgGdG~tlrelLk~-~-~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vv--i~Da~~fL~~~~ 224 (374)
T PRK01581 149 IDPKRVLILGGGDGLALREVLKY-E-TVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVH--VCDAKEFLSSPS 224 (374)
T ss_pred CCCCEEEEECCCHHHHHHHHHhc-C-CCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEE--ECcHHHHHHhcC
Confidence 45789999999999887766653 2 357999999999999999962 1111 0 11222211 112222222234
Q ss_pred CcccEEeecccccCC--CCHHHHHHHHHHHHhc--cCCeEEEEcCCCC
Q 015771 103 REHDLVIASYVLGEV--PSLQDRITIVRQLWDL--TRDVLVLVEPGTP 146 (400)
Q Consensus 103 ~~~DLVias~~L~eL--~~~~~r~~~i~~Lw~~--~gG~LVlVE~Gtp 146 (400)
++||+|++...-..- ....-..++++.+.+. +||++|+-. +.|
T Consensus 225 ~~YDVIIvDl~DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Qs-~sp 271 (374)
T PRK01581 225 SLYDVIIIDFPDPATELLSTLYTSELFARIATFLTEDGAFVCQS-NSP 271 (374)
T ss_pred CCccEEEEcCCCccccchhhhhHHHHHHHHHHhcCCCcEEEEec-CCh
Confidence 689999987421100 0011112344444433 799988763 344
|
|
| >COG4123 Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.18 E-value=1.7e-05 Score=75.30 Aligned_cols=108 Identities=19% Similarity=0.127 Sum_probs=68.2
Q ss_pred CCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCCCCceeechhhhHhhhhc-ccCCCcccEEe
Q 015771 31 PAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDI-SKSEREHDLVI 109 (400)
Q Consensus 31 p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~~~~~~~~~~~~~l~~~l-~~~~~~~DLVi 109 (400)
..+|||+|||.|.+.++++...++ .++++||+.++|.+.|++.++.......++.. ..|+.... .....+||+||
T Consensus 45 ~~~IlDlGaG~G~l~L~la~r~~~--a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~--~~Di~~~~~~~~~~~fD~Ii 120 (248)
T COG4123 45 KGRILDLGAGNGALGLLLAQRTEK--AKIVGVEIQEEAAEMAQRNVALNPLEERIQVI--EADIKEFLKALVFASFDLII 120 (248)
T ss_pred CCeEEEecCCcCHHHHHHhccCCC--CcEEEEEeCHHHHHHHHHHHHhCcchhceeEe--hhhHHHhhhcccccccCEEE
Confidence 579999999999999999876543 78999999999999999988653222222111 12332211 12344799999
Q ss_pred ecccccCCCCH----H--------------HHHHHHHHHHhccCCeEEEEcC
Q 015771 110 ASYVLGEVPSL----Q--------------DRITIVRQLWDLTRDVLVLVEP 143 (400)
Q Consensus 110 as~~L~eL~~~----~--------------~r~~~i~~Lw~~~gG~LVlVE~ 143 (400)
|+==....... . +..+....++ +++|.|.+|-+
T Consensus 121 ~NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~l-k~~G~l~~V~r 171 (248)
T COG4123 121 CNPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLL-KPGGRLAFVHR 171 (248)
T ss_pred eCCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHc-cCCCEEEEEec
Confidence 96433332211 1 1112223333 37999999965
|
|
| >TIGR00536 hemK_fam HemK family putative methylases | Back alignment and domain information |
|---|
Probab=98.18 E-value=3.4e-05 Score=75.07 Aligned_cols=71 Identities=21% Similarity=0.338 Sum_probs=51.0
Q ss_pred CeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCC---CCceeechhhhHhhhhcccCCCcccEE
Q 015771 32 AKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKD---LPLIHSYNSIQALNKDISKSEREHDLV 108 (400)
Q Consensus 32 ~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~---~~~~~~~~~~~~l~~~l~~~~~~~DLV 108 (400)
.+|||+|||+|..+.+++..++ ..+++++|.|+.+++.|+..+..... +.++.. ++...+ ...+||+|
T Consensus 116 ~~vLDlG~GsG~i~l~la~~~~--~~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~-----d~~~~~--~~~~fDlI 186 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAYEFP--NAEVIAVDISPDALAVAEENAEKNQLEHRVEFIQS-----NLFEPL--AGQKIDII 186 (284)
T ss_pred CEEEEEeccHhHHHHHHHHHCC--CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEC-----chhccC--cCCCccEE
Confidence 6899999999999999888775 35899999999999999998764321 222221 222122 22379999
Q ss_pred eec
Q 015771 109 IAS 111 (400)
Q Consensus 109 ias 111 (400)
++.
T Consensus 187 vsN 189 (284)
T TIGR00536 187 VSN 189 (284)
T ss_pred EEC
Confidence 985
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain. |
| >PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.17 E-value=2.7e-05 Score=81.81 Aligned_cols=73 Identities=19% Similarity=0.296 Sum_probs=51.3
Q ss_pred CCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCC---CCCceeechhhhHhhhhcccCCCccc
Q 015771 30 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK---DLPLIHSYNSIQALNKDISKSEREHD 106 (400)
Q Consensus 30 ~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~---~~~~~~~~~~~~~l~~~l~~~~~~~D 106 (400)
.+.+|||+|||+|..+.+++..++. .+++++|.|+.|++.|+..+.... .+.++.. ++...+ ..++||
T Consensus 138 ~~~~VLDlG~GsG~iai~la~~~p~--~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~-----D~~~~~--~~~~fD 208 (506)
T PRK01544 138 KFLNILELGTGSGCIAISLLCELPN--ANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHS-----NWFENI--EKQKFD 208 (506)
T ss_pred CCCEEEEccCchhHHHHHHHHHCCC--CeEEEEECCHHHHHHHHHHHHHcCCccceeeeec-----chhhhC--cCCCcc
Confidence 3468999999999999888877653 589999999999999998875432 1222221 121122 235799
Q ss_pred EEeec
Q 015771 107 LVIAS 111 (400)
Q Consensus 107 LVias 111 (400)
+|+++
T Consensus 209 lIvsN 213 (506)
T PRK01544 209 FIVSN 213 (506)
T ss_pred EEEEC
Confidence 99983
|
|
| >COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.13 E-value=3.8e-05 Score=74.67 Aligned_cols=71 Identities=20% Similarity=0.237 Sum_probs=51.8
Q ss_pred eEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCCCCceeechhhhHhhhhcccCCCcccEEeec
Q 015771 33 KVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDISKSEREHDLVIAS 111 (400)
Q Consensus 33 ~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~~~~~~~~~~~~~l~~~l~~~~~~~DLVias 111 (400)
+|||+|||+|..+.+++...+. .+|+++|+|+.+++.|+..+...+- ..+.... .++- ....++||+||++
T Consensus 113 ~ilDlGTGSG~iai~la~~~~~--~~V~a~Dis~~Al~~A~~Na~~~~l-~~~~~~~--~dlf---~~~~~~fDlIVsN 183 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEGPD--AEVIAVDISPDALALARENAERNGL-VRVLVVQ--SDLF---EPLRGKFDLIVSN 183 (280)
T ss_pred cEEEecCChHHHHHHHHhhCcC--CeEEEEECCHHHHHHHHHHHHHcCC-ccEEEEe--eecc---cccCCceeEEEeC
Confidence 8999999999999999988763 6899999999999999998876431 1111110 1121 2234589999985
|
|
| >PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.13 E-value=1.8e-05 Score=78.22 Aligned_cols=124 Identities=8% Similarity=0.009 Sum_probs=70.7
Q ss_pred HHHhHHHHHHHHHHHHHHCCCCCCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCC--CCCce
Q 015771 8 LLECLLFTLLVTESFARRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK--DLPLI 85 (400)
Q Consensus 8 ~~~~Ya~~~~vL~el~~rlp~~~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~--~~~~~ 85 (400)
|-.|.......+..+.+.+....+.+|||+|||+|..+..++. ...+|+++|.|+.|++.|+..++... ++.++
T Consensus 151 ~Q~n~~~~~~l~~~v~~~l~~~~~~~VLDl~cG~G~~sl~la~----~~~~V~gvD~s~~av~~A~~n~~~~~l~~v~~~ 226 (315)
T PRK03522 151 FQTNPAVAAQLYATARDWVRELPPRSMWDLFCGVGGFGLHCAT----PGMQLTGIEISAEAIACAKQSAAELGLTNVQFQ 226 (315)
T ss_pred eecCHHHHHHHHHHHHHHHHhcCCCEEEEccCCCCHHHHHHHh----cCCEEEEEeCCHHHHHHHHHHHHHcCCCceEEE
Confidence 3344444444444444443333568999999999999888875 23689999999999999998875432 22222
Q ss_pred eechhhhHhhhhcccCCCcccEEeecccccCCCCHHHHHHHHHHHHhccCCeEEEEcCCC
Q 015771 86 HSYNSIQALNKDISKSEREHDLVIASYVLGEVPSLQDRITIVRQLWDLTRDVLVLVEPGT 145 (400)
Q Consensus 86 ~~~~~~~~l~~~l~~~~~~~DLVias~~L~eL~~~~~r~~~i~~Lw~~~gG~LVlVE~Gt 145 (400)
.. ++........+.||+|++.---..+. ..+++.|.+..-+.+|.|..+.
T Consensus 227 ~~-----D~~~~~~~~~~~~D~Vv~dPPr~G~~-----~~~~~~l~~~~~~~ivyvsc~p 276 (315)
T PRK03522 227 AL-----DSTQFATAQGEVPDLVLVNPPRRGIG-----KELCDYLSQMAPRFILYSSCNA 276 (315)
T ss_pred Ec-----CHHHHHHhcCCCCeEEEECCCCCCcc-----HHHHHHHHHcCCCeEEEEECCc
Confidence 21 22211111234699999763211111 1233333333225677676543
|
|
| >PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=98.13 E-value=7.8e-06 Score=75.31 Aligned_cols=113 Identities=18% Similarity=0.135 Sum_probs=64.3
Q ss_pred CCCCeEEEEccchhHHH----HHHHHHCCC---CCcEEEEEeCCHHHHHHHHHhhcC---CCCCC------ce-ee---c
Q 015771 29 FSPAKVLDFGAGTGSAF----WALREVWPR---SLEKVNLVEPSQSMQRAGQSLMQG---PKDLP------LI-HS---Y 88 (400)
Q Consensus 29 ~~p~~VLDvG~G~Gt~~----~Al~~~~~~---~~~~v~~vD~S~~ml~~a~~ll~~---~~~~~------~~-~~---~ 88 (400)
..+.+|+..||++|--. ..+.+..+. ...+++++|+|+.+++.|++-.=. ..++| +. .. .
T Consensus 30 ~~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~ 109 (196)
T PF01739_consen 30 GRPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGG 109 (196)
T ss_dssp -S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCC
T ss_pred CCCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCc
Confidence 36789999999999533 334443322 236999999999999999764311 11222 00 00 0
Q ss_pred hh------------hhHhhhhcccCCCcccEEeecccccCCCCHHHHHHHHHHHHhc--cCCeEEEEcC
Q 015771 89 NS------------IQALNKDISKSEREHDLVIASYVLGEVPSLQDRITIVRQLWDL--TRDVLVLVEP 143 (400)
Q Consensus 89 ~~------------~~~l~~~l~~~~~~~DLVias~~L~eL~~~~~r~~~i~~Lw~~--~gG~LVlVE~ 143 (400)
+. ..++.. .+...+.||+|+|-|||..+. .+.+..+++.+... |||+|+|=..
T Consensus 110 ~~v~~~lr~~V~F~~~NL~~-~~~~~~~fD~I~CRNVlIYF~-~~~~~~vl~~l~~~L~pgG~L~lG~s 176 (196)
T PF01739_consen 110 YRVKPELRKMVRFRRHNLLD-PDPPFGRFDLIFCRNVLIYFD-PETQQRVLRRLHRSLKPGGYLFLGHS 176 (196)
T ss_dssp TTE-HHHHTTEEEEE--TT--S------EEEEEE-SSGGGS--HHHHHHHHHHHGGGEEEEEEEEE-TT
T ss_pred eeEChHHcCceEEEecccCC-CCcccCCccEEEecCEEEEeC-HHHHHHHHHHHHHHcCCCCEEEEecC
Confidence 00 011221 123457899999999999995 77888999999876 8999997543
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A. |
| >PLN02781 Probable caffeoyl-CoA O-methyltransferase | Back alignment and domain information |
|---|
Probab=98.13 E-value=2.6e-05 Score=73.82 Aligned_cols=49 Identities=12% Similarity=0.260 Sum_probs=41.5
Q ss_pred CCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCC
Q 015771 30 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGP 79 (400)
Q Consensus 30 ~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~ 79 (400)
++++|||+|||+|..+++++...+. ..+++++|.++++.+.|++.++..
T Consensus 68 ~~~~vLEiGt~~G~s~l~la~~~~~-~g~v~tiD~d~~~~~~A~~n~~~~ 116 (234)
T PLN02781 68 NAKNTLEIGVFTGYSLLTTALALPE-DGRITAIDIDKEAYEVGLEFIKKA 116 (234)
T ss_pred CCCEEEEecCcccHHHHHHHHhCCC-CCEEEEEECCHHHHHHHHHHHHHc
Confidence 5789999999999887777766653 458999999999999999988754
|
|
| >PLN02232 ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Probab=98.12 E-value=7.9e-06 Score=72.72 Aligned_cols=82 Identities=12% Similarity=0.056 Sum_probs=56.5
Q ss_pred EEEeCCHHHHHHHHHhhcCC-----CCCCceeechhhhHhhhhcccCCCcccEEeecccccCCCCHHHHHHHHHHHHhcc
Q 015771 60 NLVEPSQSMQRAGQSLMQGP-----KDLPLIHSYNSIQALNKDISKSEREHDLVIASYVLGEVPSLQDRITIVRQLWDLT 134 (400)
Q Consensus 60 ~~vD~S~~ml~~a~~ll~~~-----~~~~~~~~~~~~~~l~~~l~~~~~~~DLVias~~L~eL~~~~~r~~~i~~Lw~~~ 134 (400)
+++|.|++|++.|++..+.. .++.++.. +.. +++...++||+|+++++|+++++...-..-+.+++ +|
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~-----d~~-~lp~~~~~fD~v~~~~~l~~~~d~~~~l~ei~rvL-kp 73 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEG-----DAI-DLPFDDCEFDAVTMGYGLRNVVDRLRAMKEMYRVL-KP 73 (160)
T ss_pred CeEcCCHHHHHHHHHhhhcccccCCCceEEEEe-----chh-hCCCCCCCeeEEEecchhhcCCCHHHHHHHHHHHc-Cc
Confidence 48999999999997665421 12223222 222 35556678999999999999976554444444444 38
Q ss_pred CCeEEEEcCCCCCc
Q 015771 135 RDVLVLVEPGTPQG 148 (400)
Q Consensus 135 gG~LVlVE~Gtp~G 148 (400)
||.|+|+|.+.+..
T Consensus 74 GG~l~i~d~~~~~~ 87 (160)
T PLN02232 74 GSRVSILDFNKSNQ 87 (160)
T ss_pred CeEEEEEECCCCCh
Confidence 99999999987664
|
|
| >PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.06 E-value=5.1e-05 Score=76.61 Aligned_cols=108 Identities=11% Similarity=0.067 Sum_probs=69.1
Q ss_pred CCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCC--CCCCceeechhhhHhhhhcccCCCcccE
Q 015771 30 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGP--KDLPLIHSYNSIQALNKDISKSEREHDL 107 (400)
Q Consensus 30 ~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~--~~~~~~~~~~~~~~l~~~l~~~~~~~DL 107 (400)
....+||+|||+|..+.+++...|+ ..+++||.+..|+..+...+... .|+..+... ...+... ...+.+|.
T Consensus 122 ~~p~vLEIGcGsG~~ll~lA~~~P~--~~~iGIEI~~~~i~~a~~ka~~~gL~NV~~i~~D--A~~ll~~--~~~~s~D~ 195 (390)
T PRK14121 122 QEKILIEIGFGSGRHLLYQAKNNPN--KLFIGIEIHTPSIEQVLKQIELLNLKNLLIINYD--ARLLLEL--LPSNSVEK 195 (390)
T ss_pred CCCeEEEEcCcccHHHHHHHHhCCC--CCEEEEECCHHHHHHHHHHHHHcCCCcEEEEECC--HHHhhhh--CCCCceeE
Confidence 3458999999999999999988763 58999999999999887776543 233333322 1111111 24578999
Q ss_pred EeecccccCCCCHHHH---HHHHHHHHhc--cCCeEEEEcC
Q 015771 108 VIASYVLGEVPSLQDR---ITIVRQLWDL--TRDVLVLVEP 143 (400)
Q Consensus 108 Vias~~L~eL~~~~~r---~~~i~~Lw~~--~gG~LVlVE~ 143 (400)
|++.+..-+......| ..++..+.+. +||.+.|.-.
T Consensus 196 I~lnFPdPW~KkrHRRlv~~~fL~e~~RvLkpGG~l~l~TD 236 (390)
T PRK14121 196 IFVHFPVPWDKKPHRRVISEDFLNEALRVLKPGGTLELRTD 236 (390)
T ss_pred EEEeCCCCccccchhhccHHHHHHHHHHHcCCCcEEEEEEE
Confidence 9987654432211111 2344444432 7999988743
|
|
| >TIGR01177 conserved hypothetical protein TIGR01177 | Back alignment and domain information |
|---|
Probab=98.05 E-value=5.2e-05 Score=75.35 Aligned_cols=104 Identities=15% Similarity=0.117 Sum_probs=65.4
Q ss_pred CeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCC--CCCceeechhhhHhhhhcccCCCcccEEe
Q 015771 32 AKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK--DLPLIHSYNSIQALNKDISKSEREHDLVI 109 (400)
Q Consensus 32 ~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~--~~~~~~~~~~~~~l~~~l~~~~~~~DLVi 109 (400)
.+|||.|||+|+.+.+++.. ...++++|.|+.|++.++..++..+ ++.... .+.. .++...+.||+|+
T Consensus 184 ~~vLDp~cGtG~~lieaa~~----~~~v~g~Di~~~~~~~a~~nl~~~g~~~i~~~~-----~D~~-~l~~~~~~~D~Iv 253 (329)
T TIGR01177 184 DRVLDPFCGTGGFLIEAGLM----GAKVIGCDIDWKMVAGARINLEHYGIEDFFVKR-----GDAT-KLPLSSESVDAIA 253 (329)
T ss_pred CEEEECCCCCCHHHHHHHHh----CCeEEEEcCCHHHHHHHHHHHHHhCCCCCeEEe-----cchh-cCCcccCCCCEEE
Confidence 58999999999988776542 3589999999999999988876532 111111 1222 2333356899999
Q ss_pred ec--ccccCC-C--CH-HHHHHHHHHHHhc--cCCeEEEEcCCC
Q 015771 110 AS--YVLGEV-P--SL-QDRITIVRQLWDL--TRDVLVLVEPGT 145 (400)
Q Consensus 110 as--~~L~eL-~--~~-~~r~~~i~~Lw~~--~gG~LVlVE~Gt 145 (400)
+. |..... . .. .-...++..+.+. +||.++++-+..
T Consensus 254 ~dPPyg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~~~ 297 (329)
T TIGR01177 254 TDPPYGRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYAVPTR 297 (329)
T ss_pred ECCCCcCcccccCCchHHHHHHHHHHHHHHccCCcEEEEEEcCC
Confidence 85 322111 0 01 1123445554442 799999987754
|
This family is found exclusively in the Archaea. |
| >COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.05 E-value=7e-05 Score=72.66 Aligned_cols=115 Identities=19% Similarity=0.187 Sum_probs=74.5
Q ss_pred HCCCCCCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCCCCceeechhhhHhhhhcccCCCc
Q 015771 25 RLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDISKSERE 104 (400)
Q Consensus 25 rlp~~~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 104 (400)
.++.....+|||+|||-|.....+++..| ..+++.+|.|...++.|+..+.... ....... ..++-. ...++
T Consensus 153 ~l~~~~~~~vlDlGCG~Gvlg~~la~~~p--~~~vtmvDvn~~Av~~ar~Nl~~N~-~~~~~v~--~s~~~~---~v~~k 224 (300)
T COG2813 153 TLPPDLGGKVLDLGCGYGVLGLVLAKKSP--QAKLTLVDVNARAVESARKNLAANG-VENTEVW--ASNLYE---PVEGK 224 (300)
T ss_pred hCCccCCCcEEEeCCCccHHHHHHHHhCC--CCeEEEEecCHHHHHHHHHhHHHcC-CCccEEE--Eecccc---ccccc
Confidence 34433334999999999999998888876 4689999999999999999887432 2210000 111211 12348
Q ss_pred ccEEeecccccCCCCHHH--HHHHHHHHHhc--cCCeEEEEcCCCCC
Q 015771 105 HDLVIASYVLGEVPSLQD--RITIVRQLWDL--TRDVLVLVEPGTPQ 147 (400)
Q Consensus 105 ~DLVias~~L~eL~~~~~--r~~~i~~Lw~~--~gG~LVlVE~Gtp~ 147 (400)
||+||++==++.=..... -.+++..-.+. +||.|-||-.|.+.
T Consensus 225 fd~IisNPPfh~G~~v~~~~~~~~i~~A~~~L~~gGeL~iVan~~l~ 271 (300)
T COG2813 225 FDLIISNPPFHAGKAVVHSLAQEIIAAAARHLKPGGELWIVANRHLP 271 (300)
T ss_pred ccEEEeCCCccCCcchhHHHHHHHHHHHHHhhccCCEEEEEEcCCCC
Confidence 999999887775432111 12344443332 79999999885444
|
|
| >COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.04 E-value=2.5e-05 Score=70.73 Aligned_cols=102 Identities=18% Similarity=0.148 Sum_probs=66.9
Q ss_pred HHHHHHHCCCCCCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCC-CCceeechhhhHhhhh
Q 015771 19 TESFARRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKD-LPLIHSYNSIQALNKD 97 (400)
Q Consensus 19 L~el~~rlp~~~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~-~~~~~~~~~~~~l~~~ 97 (400)
+-.+....+++...+|+|+|||||.+.++++- + ...+|+|||++++++++++....+... +.++. . +
T Consensus 34 il~~a~~~g~l~g~~V~DlG~GTG~La~ga~~-l--Ga~~V~~vdiD~~a~ei~r~N~~~l~g~v~f~~-----~----d 101 (198)
T COG2263 34 ILWVAYLRGDLEGKTVLDLGAGTGILAIGAAL-L--GASRVLAVDIDPEALEIARANAEELLGDVEFVV-----A----D 101 (198)
T ss_pred HHHHHHHcCCcCCCEEEEcCCCcCHHHHHHHh-c--CCcEEEEEecCHHHHHHHHHHHHhhCCceEEEE-----c----c
Confidence 33334456788889999999999999888663 3 347999999999999999998876321 22211 1 2
Q ss_pred cccCCCcccEEeecccccCCCCHHHHHHHHHHHHhc
Q 015771 98 ISKSEREHDLVIASYVLGEVPSLQDRITIVRQLWDL 133 (400)
Q Consensus 98 l~~~~~~~DLVias~~L~eL~~~~~r~~~i~~Lw~~ 133 (400)
+.....++|.||.+--+.-.-...+ ..++...++.
T Consensus 102 v~~~~~~~dtvimNPPFG~~~rhaD-r~Fl~~Ale~ 136 (198)
T COG2263 102 VSDFRGKFDTVIMNPPFGSQRRHAD-RPFLLKALEI 136 (198)
T ss_pred hhhcCCccceEEECCCCccccccCC-HHHHHHHHHh
Confidence 2234567888887655554422222 2456565553
|
|
| >PHA03411 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.03 E-value=5.1e-05 Score=73.10 Aligned_cols=76 Identities=28% Similarity=0.405 Sum_probs=53.5
Q ss_pred CCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCCCCceeechhhhHhhhhcccCCCcccEEee
Q 015771 31 PAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDISKSEREHDLVIA 110 (400)
Q Consensus 31 p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~~~~~~~~~~~~~l~~~l~~~~~~~DLVia 110 (400)
..+|||+|||+|..+..+....+ ..+++++|.|+.|++.++..+. +..++.. ++.. .. ...+||+||+
T Consensus 65 ~grVLDLGcGsGilsl~la~r~~--~~~V~gVDisp~al~~Ar~n~~---~v~~v~~-----D~~e-~~-~~~kFDlIIs 132 (279)
T PHA03411 65 TGKVLDLCAGIGRLSFCMLHRCK--PEKIVCVELNPEFARIGKRLLP---EAEWITS-----DVFE-FE-SNEKFDVVIS 132 (279)
T ss_pred CCeEEEcCCCCCHHHHHHHHhCC--CCEEEEEECCHHHHHHHHHhCc---CCEEEEC-----chhh-hc-ccCCCcEEEE
Confidence 36899999999988877765543 3589999999999999988653 2223222 1221 11 2357999999
Q ss_pred cccccCCC
Q 015771 111 SYVLGEVP 118 (400)
Q Consensus 111 s~~L~eL~ 118 (400)
.-.+..++
T Consensus 133 NPPF~~l~ 140 (279)
T PHA03411 133 NPPFGKIN 140 (279)
T ss_pred cCCccccC
Confidence 77776664
|
|
| >PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases | Back alignment and domain information |
|---|
Probab=98.02 E-value=3.5e-05 Score=69.54 Aligned_cols=108 Identities=19% Similarity=0.236 Sum_probs=60.9
Q ss_pred CCCCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCC--CCC--ceeechhhh-HhhhhcccCC
Q 015771 28 GFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK--DLP--LIHSYNSIQ-ALNKDISKSE 102 (400)
Q Consensus 28 ~~~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~--~~~--~~~~~~~~~-~l~~~l~~~~ 102 (400)
.+++.+||++|||+|...++++... ...+|++.|.++ .++..+..++... ... .+... .|. ...... ...
T Consensus 43 ~~~~~~VLELGaG~Gl~gi~~a~~~--~~~~Vv~TD~~~-~l~~l~~Ni~~N~~~~~~~v~v~~L-~Wg~~~~~~~-~~~ 117 (173)
T PF10294_consen 43 LFRGKRVLELGAGTGLPGIAAAKLF--GAARVVLTDYNE-VLELLRRNIELNGSLLDGRVSVRPL-DWGDELDSDL-LEP 117 (173)
T ss_dssp GTTTSEEEETT-TTSHHHHHHHHT---T-SEEEEEE-S--HHHHHHHHHHTT--------EEEE---TTS-HHHHH-HS-
T ss_pred hcCCceEEEECCccchhHHHHHhcc--CCceEEEeccch-hhHHHHHHHHhccccccccccCcEE-EecCcccccc-ccc
Confidence 4677899999999998888877653 256899999999 7787777775432 111 11111 111 111111 134
Q ss_pred CcccEEeecccccCCCCHHHHHHHHHHHHhccCCeEEEE
Q 015771 103 REHDLVIASYVLGEVPSLQDRITIVRQLWDLTRDVLVLV 141 (400)
Q Consensus 103 ~~~DLVias~~L~eL~~~~~r~~~i~~Lw~~~gG~LVlV 141 (400)
.+||+|+++-++..-.........+..+++ ++|.+++.
T Consensus 118 ~~~D~IlasDv~Y~~~~~~~L~~tl~~ll~-~~~~vl~~ 155 (173)
T PF10294_consen 118 HSFDVILASDVLYDEELFEPLVRTLKRLLK-PNGKVLLA 155 (173)
T ss_dssp SSBSEEEEES--S-GGGHHHHHHHHHHHBT-T-TTEEEE
T ss_pred ccCCEEEEecccchHHHHHHHHHHHHHHhC-CCCEEEEE
Confidence 589999999999875445556667777775 44544443
|
They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A. |
| >PHA03412 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.02 E-value=4.6e-05 Score=71.84 Aligned_cols=107 Identities=13% Similarity=0.228 Sum_probs=66.2
Q ss_pred CCeEEEEccchhHHHHHHHHHCCC-CCcEEEEEeCCHHHHHHHHHhhcCCCCCCceeechhhhHhhhhcccCCCcccEEe
Q 015771 31 PAKVLDFGAGTGSAFWALREVWPR-SLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDISKSEREHDLVI 109 (400)
Q Consensus 31 p~~VLDvG~G~Gt~~~Al~~~~~~-~~~~v~~vD~S~~ml~~a~~ll~~~~~~~~~~~~~~~~~l~~~l~~~~~~~DLVi 109 (400)
+.+|||+|||+|.++++++...+. ...++++||+++.|++.|+..+.+ ..++.. ++.. .. ...+||+||
T Consensus 50 ~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~~~---~~~~~~-----D~~~-~~-~~~~FDlII 119 (241)
T PHA03412 50 SGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIVPE---ATWINA-----DALT-TE-FDTLFDMAI 119 (241)
T ss_pred CCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhccC---CEEEEc-----chhc-cc-ccCCccEEE
Confidence 479999999999999988875431 235899999999999999976542 333322 2211 11 235899999
Q ss_pred ecccccCCCCH---------HHHHHHHHHHHhc-cCCeEEEEcCCCCCch
Q 015771 110 ASYVLGEVPSL---------QDRITIVRQLWDL-TRDVLVLVEPGTPQGS 149 (400)
Q Consensus 110 as~~L~eL~~~---------~~r~~~i~~Lw~~-~gG~LVlVE~Gtp~Gf 149 (400)
++-=...+... .--..++...++. +.|.+ |=|.+..+|
T Consensus 120 sNPPY~~~~~~d~~ar~~g~~~~~~li~~A~~Ll~~G~~--ILP~~~~~~ 167 (241)
T PHA03412 120 SNPPFGKIKTSDFKGKYTGAEFEYKVIERASQIARQGTF--IIPQMSANF 167 (241)
T ss_pred ECCCCCCccccccCCcccccHHHHHHHHHHHHHcCCCEE--EeCcccccC
Confidence 96433333211 1112244443333 45666 557777776
|
|
| >PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.01 E-value=3.4e-05 Score=79.81 Aligned_cols=113 Identities=18% Similarity=0.143 Sum_probs=66.4
Q ss_pred HHHHHHHHHHCCCCCCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCC--CCCceeechhhhH
Q 015771 16 LLVTESFARRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK--DLPLIHSYNSIQA 93 (400)
Q Consensus 16 ~~vL~el~~rlp~~~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~--~~~~~~~~~~~~~ 93 (400)
...+..+...+......+|||+|||+|+.+.+++.. ..+++++|.|+.|++.|+..++... ++.++.. +
T Consensus 283 e~l~~~vl~~l~~~~~~~VLDlgcGtG~~sl~la~~----~~~V~gvD~s~~al~~A~~n~~~~~~~~v~~~~~-----d 353 (443)
T PRK13168 283 QKMVARALEWLDPQPGDRVLDLFCGLGNFTLPLARQ----AAEVVGVEGVEAMVERARENARRNGLDNVTFYHA-----N 353 (443)
T ss_pred HHHHHHHHHHhcCCCCCEEEEEeccCCHHHHHHHHh----CCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEe-----C
Confidence 334444444443334479999999999998888754 3589999999999999998875332 2222222 1
Q ss_pred hhhhc---ccCCCcccEEeecccccCCCCHHHHHHHHHHHHhccCCeEEEEcC
Q 015771 94 LNKDI---SKSEREHDLVIASYVLGEVPSLQDRITIVRQLWDLTRDVLVLVEP 143 (400)
Q Consensus 94 l~~~l---~~~~~~~DLVias~~L~eL~~~~~r~~~i~~Lw~~~gG~LVlVE~ 143 (400)
+...+ +....+||+|++.---..+ ...++.|.+..-+.+|.|..
T Consensus 354 ~~~~l~~~~~~~~~fD~Vi~dPPr~g~------~~~~~~l~~~~~~~ivyvSC 400 (443)
T PRK13168 354 LEEDFTDQPWALGGFDKVLLDPPRAGA------AEVMQALAKLGPKRIVYVSC 400 (443)
T ss_pred hHHhhhhhhhhcCCCCEEEECcCCcCh------HHHHHHHHhcCCCeEEEEEe
Confidence 21111 1223579999874322211 13345555432344555544
|
|
| >PRK14901 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=97.99 E-value=5.9e-05 Score=77.82 Aligned_cols=112 Identities=16% Similarity=0.103 Sum_probs=69.4
Q ss_pred CCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCC--CCCceeechhhhHhhhhcccCCCcccE
Q 015771 30 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK--DLPLIHSYNSIQALNKDISKSEREHDL 107 (400)
Q Consensus 30 ~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~--~~~~~~~~~~~~~l~~~l~~~~~~~DL 107 (400)
.+.+|||+|||||..+..+++..+ ...+++++|.|++|++.++..++..+ ++..+... ...+....+...++||.
T Consensus 252 ~g~~VLDl~ag~G~kt~~la~~~~-~~g~v~a~D~~~~rl~~~~~n~~r~g~~~v~~~~~D--~~~~~~~~~~~~~~fD~ 328 (434)
T PRK14901 252 PGEVILDACAAPGGKTTHIAELMG-DQGEIWAVDRSASRLKKLQENAQRLGLKSIKILAAD--SRNLLELKPQWRGYFDR 328 (434)
T ss_pred CcCEEEEeCCCCchhHHHHHHHhC-CCceEEEEcCCHHHHHHHHHHHHHcCCCeEEEEeCC--hhhcccccccccccCCE
Confidence 347999999999999888887764 24589999999999999998887542 22222111 01111000112457999
Q ss_pred Eeec------ccccCCCCH------HH-------HHHHHHHHHhc--cCCeEEEEcCC
Q 015771 108 VIAS------YVLGEVPSL------QD-------RITIVRQLWDL--TRDVLVLVEPG 144 (400)
Q Consensus 108 Vias------~~L~eL~~~------~~-------r~~~i~~Lw~~--~gG~LVlVE~G 144 (400)
|++- -++..-++. .. ..+++.+.++. +||.||.....
T Consensus 329 Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystcs 386 (434)
T PRK14901 329 ILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATCT 386 (434)
T ss_pred EEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCC
Confidence 9862 233322221 11 23566666664 89999987653
|
|
| >KOG2899 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.98 E-value=5.8e-05 Score=70.70 Aligned_cols=126 Identities=16% Similarity=0.202 Sum_probs=80.4
Q ss_pred CCCCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCCCC--ce--------------ee----
Q 015771 28 GFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLP--LI--------------HS---- 87 (400)
Q Consensus 28 ~~~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~~~--~~--------------~~---- 87 (400)
-|.|..+|||||-.|.++.+++..|+. ..+.+||+++.++..|++.++...... .. ..
T Consensus 56 ~f~~~~~LDIGCNsG~lt~~iak~F~~--r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~~a 133 (288)
T KOG2899|consen 56 WFEPKQALDIGCNSGFLTLSIAKDFGP--RRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQRNEA 133 (288)
T ss_pred ccCcceeEeccCCcchhHHHHHHhhcc--ceeeEeeccHHHHHHHHHhccccccccccccCCCccccccccccccccccc
Confidence 378899999999999999999999974 469999999999999998876421100 00 00
Q ss_pred ------ch--hhhH------h--hhhcccCCCcccEEeeccccc--CCC-CHHHHHHHHHHHHhc--cCCeEEEEcCCCC
Q 015771 88 ------YN--SIQA------L--NKDISKSEREHDLVIASYVLG--EVP-SLQDRITIVRQLWDL--TRDVLVLVEPGTP 146 (400)
Q Consensus 88 ------~~--~~~~------l--~~~l~~~~~~~DLVias~~L~--eL~-~~~~r~~~i~~Lw~~--~gG~LVlVE~Gtp 146 (400)
.. +... + ++-+......||+|+|-.+=. +|. ..+....+++.+|+. |||+|| || |
T Consensus 134 ~~a~t~~~p~n~~f~~~n~vle~~dfl~~~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~pgGiLv-vE---P 209 (288)
T KOG2899|consen 134 DRAFTTDFPDNVWFQKENYVLESDDFLDMIQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHPGGILV-VE---P 209 (288)
T ss_pred cccccccCCcchhcccccEEEecchhhhhccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCcCcEEE-Ec---C
Confidence 00 0000 0 000112345799998754322 332 244567889999886 889887 55 4
Q ss_pred CchHHHHHHHHHH
Q 015771 147 QGSSIISQMRSHI 159 (400)
Q Consensus 147 ~Gf~~I~~aR~~l 159 (400)
.+|..-..++..+
T Consensus 210 QpWksY~kaar~~ 222 (288)
T KOG2899|consen 210 QPWKSYKKAARRS 222 (288)
T ss_pred CchHHHHHHHHHH
Confidence 5565555555443
|
|
| >TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase | Back alignment and domain information |
|---|
Probab=97.95 E-value=3.2e-05 Score=74.48 Aligned_cols=110 Identities=15% Similarity=0.115 Sum_probs=67.9
Q ss_pred CCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCCCCceeechhhhHhhhhcccCCCcccEEe
Q 015771 30 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDISKSEREHDLVI 109 (400)
Q Consensus 30 ~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~~~~~~~~~~~~~l~~~l~~~~~~~DLVi 109 (400)
.+.+|||+|||||..+..+++..+. ...|+++|.|+.|++.++..++... +..+... ..+.. .++...+.||.|+
T Consensus 71 ~g~~VLDl~ag~G~kt~~la~~~~~-~g~v~a~D~~~~~l~~~~~n~~~~g-~~~v~~~--~~D~~-~~~~~~~~fD~Vl 145 (264)
T TIGR00446 71 PPERVLDMAAAPGGKTTQISALMKN-EGAIVANEFSKSRTKVLIANINRCG-VLNVAVT--NFDGR-VFGAAVPKFDAIL 145 (264)
T ss_pred CcCEEEEECCCchHHHHHHHHHcCC-CCEEEEEcCCHHHHHHHHHHHHHcC-CCcEEEe--cCCHH-HhhhhccCCCEEE
Confidence 3478999999999999888877753 3589999999999999998887643 2111110 11111 1122234699998
Q ss_pred ecc------cccCCCC------HH-------HHHHHHHHHHhc--cCCeEEEEcCC
Q 015771 110 ASY------VLGEVPS------LQ-------DRITIVRQLWDL--TRDVLVLVEPG 144 (400)
Q Consensus 110 as~------~L~eL~~------~~-------~r~~~i~~Lw~~--~gG~LVlVE~G 144 (400)
+-- ++..-|+ .. ....++++.++. +||+||.....
T Consensus 146 ~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstcs 201 (264)
T TIGR00446 146 LDAPCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYSTCS 201 (264)
T ss_pred EcCCCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCC
Confidence 621 1211111 11 112466666654 79999988653
|
|
| >PRK14903 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=97.95 E-value=7.5e-05 Score=76.97 Aligned_cols=110 Identities=22% Similarity=0.271 Sum_probs=69.0
Q ss_pred CCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCCCCceeechhhhHhhhhcc-cCCCcccEE
Q 015771 30 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDIS-KSEREHDLV 108 (400)
Q Consensus 30 ~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~~~~~~~~~~~~~l~~~l~-~~~~~~DLV 108 (400)
.+.+|||+|||||.-+..+++..+ ...+++++|.|+.|++.++..++..+ +..+... ..+.. .++ ...++||.|
T Consensus 237 ~g~~VLD~cagpGgkt~~la~~~~-~~g~V~a~Dis~~rl~~~~~n~~r~g-~~~v~~~--~~Da~-~l~~~~~~~fD~V 311 (431)
T PRK14903 237 PGLRVLDTCAAPGGKTTAIAELMK-DQGKILAVDISREKIQLVEKHAKRLK-LSSIEIK--IADAE-RLTEYVQDTFDRI 311 (431)
T ss_pred CCCEEEEeCCCccHHHHHHHHHcC-CCCEEEEEECCHHHHHHHHHHHHHcC-CCeEEEE--ECchh-hhhhhhhccCCEE
Confidence 346899999999999888887775 24689999999999999999887643 2211110 11111 111 124579999
Q ss_pred eec---ccccCC---CCH------H-------HHHHHHHHHHhc--cCCeEEEEcCC
Q 015771 109 IAS---YVLGEV---PSL------Q-------DRITIVRQLWDL--TRDVLVLVEPG 144 (400)
Q Consensus 109 ias---~~L~eL---~~~------~-------~r~~~i~~Lw~~--~gG~LVlVE~G 144 (400)
++- ..++.+ |+. + ...+++.+.++. +||.||..-..
T Consensus 312 l~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs 368 (431)
T PRK14903 312 LVDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCT 368 (431)
T ss_pred EECCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECC
Confidence 861 122222 111 0 123456666654 79999887664
|
|
| >PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes | Back alignment and domain information |
|---|
Probab=97.94 E-value=4.1e-05 Score=76.14 Aligned_cols=120 Identities=15% Similarity=0.277 Sum_probs=70.6
Q ss_pred CCCeEEEEccchhHHH--HHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCC----CC-C---Cc----eeechhhhHhh
Q 015771 30 SPAKVLDFGAGTGSAF--WALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGP----KD-L---PL----IHSYNSIQALN 95 (400)
Q Consensus 30 ~p~~VLDvG~G~Gt~~--~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~----~~-~---~~----~~~~~~~~~l~ 95 (400)
.+.+|||+|||-|.-+ |.-+ ....|+++|+|..-++.|+...... .. . .+ +........+.
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~-----~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~ 136 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKA-----KIKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLR 136 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHT-----T-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHH
T ss_pred CCCeEEEecCCCchhHHHHHhc-----CCCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhh
Confidence 4579999999987544 4433 5679999999999999998888211 00 0 01 11111111222
Q ss_pred hhcccCCCcccEEeecccccCCCCHHHH-HHHHHHHHhc--cCCeEEEEcCCCCCchHHHHHHHH
Q 015771 96 KDISKSEREHDLVIASYVLGEVPSLQDR-ITIVRQLWDL--TRDVLVLVEPGTPQGSSIISQMRS 157 (400)
Q Consensus 96 ~~l~~~~~~~DLVias~~L~eL~~~~~r-~~~i~~Lw~~--~gG~LVlVE~Gtp~Gf~~I~~aR~ 157 (400)
..++....+||+|-|-++||..-..+++ ..+++++.+. +||++|.. +|.+...+..+|+
T Consensus 137 ~~~~~~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT---~~d~~~i~~~l~~ 198 (331)
T PF03291_consen 137 EKLPPRSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFIGT---TPDSDEIVKRLRE 198 (331)
T ss_dssp CTSSSTTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEE---EE-HHHHHCCHHC
T ss_pred hhccccCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEEE---ecCHHHHHHHHHh
Confidence 2222223689999999999988655544 4478888775 89999965 5666655444443
|
The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A. |
| >TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB | Back alignment and domain information |
|---|
Probab=97.94 E-value=8.1e-05 Score=76.62 Aligned_cols=111 Identities=17% Similarity=0.200 Sum_probs=71.2
Q ss_pred CCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCCCCceeechhhhHhhhhccc--CCCcccE
Q 015771 30 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDISK--SEREHDL 107 (400)
Q Consensus 30 ~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~~~~~~~~~~~~~l~~~l~~--~~~~~DL 107 (400)
.+.+|||+|||||..+..+++..+ ..+++++|.|+.|++.++..++..+ .. +.......+.. .... ...+||.
T Consensus 238 ~g~~VLDlcag~G~kt~~la~~~~--~~~v~a~D~~~~~l~~~~~n~~r~g-~~-~~v~~~~~d~~-~~~~~~~~~~fD~ 312 (426)
T TIGR00563 238 NEETILDACAAPGGKTTHILELAP--QAQVVALDIHEHRLKRVYENLKRLG-LT-IKAETKDGDGR-GPSQWAENEQFDR 312 (426)
T ss_pred CCCeEEEeCCCccHHHHHHHHHcC--CCeEEEEeCCHHHHHHHHHHHHHcC-CC-eEEEEeccccc-cccccccccccCE
Confidence 447999999999999888887775 3589999999999999999887543 22 11100001111 1111 3457999
Q ss_pred Eee------cccccCCCCH------H-------HHHHHHHHHHhc--cCCeEEEEcCCC
Q 015771 108 VIA------SYVLGEVPSL------Q-------DRITIVRQLWDL--TRDVLVLVEPGT 145 (400)
Q Consensus 108 Via------s~~L~eL~~~------~-------~r~~~i~~Lw~~--~gG~LVlVE~Gt 145 (400)
|++ +.++...|+. . ...+++.+.++. +||.||+.....
T Consensus 313 VllDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystcs~ 371 (426)
T TIGR00563 313 ILLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATCSV 371 (426)
T ss_pred EEEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCC
Confidence 985 2244443321 1 123566666653 899999997753
|
The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles. |
| >PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional | Back alignment and domain information |
|---|
Probab=97.94 E-value=2.6e-05 Score=74.80 Aligned_cols=93 Identities=15% Similarity=0.157 Sum_probs=60.8
Q ss_pred HhHHHHHHHHHHHHHHCCCCCCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCCCCceeech
Q 015771 10 ECLLFTLLVTESFARRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYN 89 (400)
Q Consensus 10 ~~Ya~~~~vL~el~~rlp~~~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~~~~~~~~~ 89 (400)
+||-.=.+++..+...+......+|||+|||+|+.+..+.+. ..+++++|.++.|++.++..+....++.++..
T Consensus 9 Qnfl~d~~~~~~iv~~~~~~~~~~VLEIG~G~G~lt~~L~~~----~~~v~~vEid~~~~~~l~~~~~~~~~v~ii~~-- 82 (258)
T PRK14896 9 QHFLIDDRVVDRIVEYAEDTDGDPVLEIGPGKGALTDELAKR----AKKVYAIELDPRLAEFLRDDEIAAGNVEIIEG-- 82 (258)
T ss_pred ccccCCHHHHHHHHHhcCCCCcCeEEEEeCccCHHHHHHHHh----CCEEEEEECCHHHHHHHHHHhccCCCEEEEEe--
Confidence 333333455666666554444579999999999999988865 24799999999999999987754333333322
Q ss_pred hhhHhhhhcccCCCcccEEeecccc
Q 015771 90 SIQALNKDISKSEREHDLVIASYVL 114 (400)
Q Consensus 90 ~~~~l~~~l~~~~~~~DLVias~~L 114 (400)
+.. .++ ...+|+|+++.-.
T Consensus 83 ---D~~-~~~--~~~~d~Vv~NlPy 101 (258)
T PRK14896 83 ---DAL-KVD--LPEFNKVVSNLPY 101 (258)
T ss_pred ---ccc-cCC--chhceEEEEcCCc
Confidence 121 111 2347888776443
|
|
| >PLN02366 spermidine synthase | Back alignment and domain information |
|---|
Probab=97.92 E-value=0.00017 Score=71.00 Aligned_cols=107 Identities=18% Similarity=0.212 Sum_probs=63.7
Q ss_pred CCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCC---CCCceeechhhhHhhhhccc-CCCcc
Q 015771 30 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK---DLPLIHSYNSIQALNKDISK-SEREH 105 (400)
Q Consensus 30 ~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~---~~~~~~~~~~~~~l~~~l~~-~~~~~ 105 (400)
+|++||++|||.|..+..+... + ...++++||+++.+++.+++.+.... +-+.+... ..+....+.. ..++|
T Consensus 91 ~pkrVLiIGgG~G~~~rellk~-~-~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi--~~Da~~~l~~~~~~~y 166 (308)
T PLN02366 91 NPKKVLVVGGGDGGVLREIARH-S-SVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLH--IGDGVEFLKNAPEGTY 166 (308)
T ss_pred CCCeEEEEcCCccHHHHHHHhC-C-CCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEE--EChHHHHHhhccCCCC
Confidence 4789999999999988877654 3 45789999999999999999875421 11222111 1121111111 24679
Q ss_pred cEEeecccccCCCCH----HHHHHHHHHHHhccCCeEEEE
Q 015771 106 DLVIASYVLGEVPSL----QDRITIVRQLWDLTRDVLVLV 141 (400)
Q Consensus 106 DLVias~~L~eL~~~----~~r~~~i~~Lw~~~gG~LVlV 141 (400)
|+|++-..-..-+.. .+-.+.+.++++ +||++++-
T Consensus 167 DvIi~D~~dp~~~~~~L~t~ef~~~~~~~L~-pgGvlv~q 205 (308)
T PLN02366 167 DAIIVDSSDPVGPAQELFEKPFFESVARALR-PGGVVCTQ 205 (308)
T ss_pred CEEEEcCCCCCCchhhhhHHHHHHHHHHhcC-CCcEEEEC
Confidence 999985432211111 111233344443 79998764
|
|
| >TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB | Back alignment and domain information |
|---|
Probab=97.91 E-value=5.9e-05 Score=76.31 Aligned_cols=133 Identities=9% Similarity=0.016 Sum_probs=76.2
Q ss_pred HHHHhHHHHHHHHHHHHHHCCCCCCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCC--CCCc
Q 015771 7 LLLECLLFTLLVTESFARRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK--DLPL 84 (400)
Q Consensus 7 ~~~~~Ya~~~~vL~el~~rlp~~~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~--~~~~ 84 (400)
||-.|......++..+...+....+.+|||+|||+|+.+.+++. ...++++||.|+.+++.|+..++... ++.+
T Consensus 210 F~Q~n~~~~~~l~~~~~~~l~~~~~~~vLDL~cG~G~~~l~la~----~~~~v~~vE~~~~av~~a~~N~~~~~~~~~~~ 285 (374)
T TIGR02085 210 FFQTNPKVAAQLYATARQWVREIPVTQMWDLFCGVGGFGLHCAG----PDTQLTGIEIESEAIACAQQSAQMLGLDNLSF 285 (374)
T ss_pred cccCCHHHHHHHHHHHHHHHHhcCCCEEEEccCCccHHHHHHhh----cCCeEEEEECCHHHHHHHHHHHHHcCCCcEEE
Confidence 34444444444555555443323347999999999999888773 33589999999999999998875432 2222
Q ss_pred eeechhhhHhhhhcccCCCcccEEeecccccCCCCHHHHHHHHHHHHhccCCeEEEEcCCCCCchHHHHHHHHHH
Q 015771 85 IHSYNSIQALNKDISKSEREHDLVIASYVLGEVPSLQDRITIVRQLWDLTRDVLVLVEPGTPQGSSIISQMRSHI 159 (400)
Q Consensus 85 ~~~~~~~~~l~~~l~~~~~~~DLVias~~L~eL~~~~~r~~~i~~Lw~~~gG~LVlVE~Gtp~Gf~~I~~aR~~l 159 (400)
+.. ++...+.....+||+|++.=--..+ -..++..+.+..-+.+|.|+.. |. .-|||.-
T Consensus 286 ~~~-----d~~~~~~~~~~~~D~vi~DPPr~G~-----~~~~l~~l~~~~p~~ivyvsc~-p~-----TlaRDl~ 344 (374)
T TIGR02085 286 AAL-----DSAKFATAQMSAPELVLVNPPRRGI-----GKELCDYLSQMAPKFILYSSCN-AQ-----TMAKDIA 344 (374)
T ss_pred EEC-----CHHHHHHhcCCCCCEEEECCCCCCC-----cHHHHHHHHhcCCCeEEEEEeC-HH-----HHHHHHH
Confidence 221 2221111112459999886322222 1234455544423567777652 22 3357764
|
This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA. |
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.00017 Score=76.21 Aligned_cols=107 Identities=21% Similarity=0.342 Sum_probs=63.3
Q ss_pred CCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHh--hcCCC----CCCceeechhhhHhhhhcccCCC
Q 015771 30 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSL--MQGPK----DLPLIHSYNSIQALNKDISKSER 103 (400)
Q Consensus 30 ~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~l--l~~~~----~~~~~~~~~~~~~l~~~l~~~~~ 103 (400)
+|++|||+|||+|..+..+.+ .+ ...++++||++++|++.+++. +...+ +.|.++.. ..|....+....+
T Consensus 297 ~~~rVL~IG~G~G~~~~~ll~-~~-~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi--~~Da~~~l~~~~~ 372 (521)
T PRK03612 297 RPRRVLVLGGGDGLALREVLK-YP-DVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVV--NDDAFNWLRKLAE 372 (521)
T ss_pred CCCeEEEEcCCccHHHHHHHh-CC-CcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEE--EChHHHHHHhCCC
Confidence 578999999999998887765 33 347999999999999999983 32211 11222111 1122221222346
Q ss_pred cccEEeecccccCCCCHH-----HHHHHHHHHHhccCCeEEEE
Q 015771 104 EHDLVIASYVLGEVPSLQ-----DRITIVRQLWDLTRDVLVLV 141 (400)
Q Consensus 104 ~~DLVias~~L~eL~~~~-----~r~~~i~~Lw~~~gG~LVlV 141 (400)
+||+|++...-...+... +-.+.+.++++ +||.+++-
T Consensus 373 ~fDvIi~D~~~~~~~~~~~L~t~ef~~~~~~~L~-pgG~lv~~ 414 (521)
T PRK03612 373 KFDVIIVDLPDPSNPALGKLYSVEFYRLLKRRLA-PDGLLVVQ 414 (521)
T ss_pred CCCEEEEeCCCCCCcchhccchHHHHHHHHHhcC-CCeEEEEe
Confidence 899999975432222111 12233444443 78987754
|
|
| >KOG1271 consensus Methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.87 E-value=3.9e-05 Score=68.99 Aligned_cols=105 Identities=19% Similarity=0.262 Sum_probs=66.9
Q ss_pred CeEEEEccchhHHHHHHHHH-CCCCCcEEEEEeCCHHHHHHHHHhhcCCCCCCceeechhhhHhhhhcccCCCcccEEee
Q 015771 32 AKVLDFGAGTGSAFWALREV-WPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDISKSEREHDLVIA 110 (400)
Q Consensus 32 ~~VLDvG~G~Gt~~~Al~~~-~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~~~~~~~~~~~~~l~~~l~~~~~~~DLVia 110 (400)
.+|||+|||-|..+..+++. |+ .+.++||.|+..+++|+.++++......+. +.+.++... ....++||||+-
T Consensus 69 ~~VlDLGtGNG~~L~~L~~egf~---~~L~GvDYs~~AV~LA~niAe~~~~~n~I~--f~q~DI~~~-~~~~~qfdlvlD 142 (227)
T KOG1271|consen 69 DRVLDLGTGNGHLLFQLAKEGFQ---SKLTGVDYSEKAVELAQNIAERDGFSNEIR--FQQLDITDP-DFLSGQFDLVLD 142 (227)
T ss_pred cceeeccCCchHHHHHHHHhcCC---CCccccccCHHHHHHHHHHHHhcCCCccee--EEEeeccCC-cccccceeEEee
Confidence 39999999999999887753 43 348999999999999999987643221111 111223221 234568888865
Q ss_pred cccccCCC----CHHHH----HHHHHHHHhccCCeEEEEcC
Q 015771 111 SYVLGEVP----SLQDR----ITIVRQLWDLTRDVLVLVEP 143 (400)
Q Consensus 111 s~~L~eL~----~~~~r----~~~i~~Lw~~~gG~LVlVE~ 143 (400)
--++.-+. ....| ...+++|++ +||++||--.
T Consensus 143 KGT~DAisLs~d~~~~r~~~Y~d~v~~ll~-~~gifvItSC 182 (227)
T KOG1271|consen 143 KGTLDAISLSPDGPVGRLVVYLDSVEKLLS-PGGIFVITSC 182 (227)
T ss_pred cCceeeeecCCCCcccceeeehhhHhhccC-CCcEEEEEec
Confidence 43332221 12233 346778886 7999988644
|
|
| >PLN02476 O-methyltransferase | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.00021 Score=69.17 Aligned_cols=107 Identities=13% Similarity=0.099 Sum_probs=65.1
Q ss_pred CCCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCCCCceee--chhhhHhhhhc-ccCCCcc
Q 015771 29 FSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHS--YNSIQALNKDI-SKSEREH 105 (400)
Q Consensus 29 ~~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~~~~~~~--~~~~~~l~~~l-~~~~~~~ 105 (400)
.++++|||+|+|+|..+++++...++ ..+++.+|.++++.+.|+..++..+-...+.. ......+..-. ....++|
T Consensus 117 ~~ak~VLEIGT~tGySal~lA~al~~-~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~L~~l~~~~~~~~F 195 (278)
T PLN02476 117 LGAERCIEVGVYTGYSSLAVALVLPE-SGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAESLKSMIQNGEGSSY 195 (278)
T ss_pred cCCCeEEEecCCCCHHHHHHHHhCCC-CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcccCCCC
Confidence 36789999999999888887777764 45799999999999999999976532111111 01111121111 1113589
Q ss_pred cEEeecccccCCCCHHHHHHHHHHHHhc--cCCeEEEEcC
Q 015771 106 DLVIASYVLGEVPSLQDRITIVRQLWDL--TRDVLVLVEP 143 (400)
Q Consensus 106 DLVias~~L~eL~~~~~r~~~i~~Lw~~--~gG~LVlVE~ 143 (400)
|+|+.-.- ...-..+++.++++ +||.+| ++.
T Consensus 196 D~VFIDa~------K~~Y~~y~e~~l~lL~~GGvIV-~DN 228 (278)
T PLN02476 196 DFAFVDAD------KRMYQDYFELLLQLVRVGGVIV-MDN 228 (278)
T ss_pred CEEEECCC------HHHHHHHHHHHHHhcCCCcEEE-Eec
Confidence 99987642 22223334444432 677755 444
|
|
| >TIGR00755 ksgA dimethyladenosine transferase | Back alignment and domain information |
|---|
Probab=97.86 E-value=8.1e-05 Score=71.14 Aligned_cols=65 Identities=18% Similarity=0.172 Sum_probs=48.2
Q ss_pred HhHHHHHHHHHHHHHHCCCCCCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcC
Q 015771 10 ECLLFTLLVTESFARRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQG 78 (400)
Q Consensus 10 ~~Ya~~~~vL~el~~rlp~~~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~ 78 (400)
+||-.=..++..+.+.+..-.+.+|||+|||+|..+..+++..+ .++++|.++.|++.++..+..
T Consensus 9 q~fl~d~~i~~~i~~~~~~~~~~~VLEiG~G~G~lt~~L~~~~~----~v~~iE~d~~~~~~l~~~~~~ 73 (253)
T TIGR00755 9 QNFLIDESVIQKIVEAANVLEGDVVLEIGPGLGALTEPLLKRAK----KVTAIEIDPRLAEILRKLLSL 73 (253)
T ss_pred CccCCCHHHHHHHHHhcCCCCcCEEEEeCCCCCHHHHHHHHhCC----cEEEEECCHHHHHHHHHHhCc
Confidence 34443344555555554433457999999999999999886553 599999999999999887754
|
Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase |
| >TIGR00478 tly hemolysin TlyA family protein | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.00016 Score=68.24 Aligned_cols=56 Identities=18% Similarity=0.017 Sum_probs=40.3
Q ss_pred HhHHHHHHHHHHHHHHCCCCCCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHH
Q 015771 10 ECLLFTLLVTESFARRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRA 71 (400)
Q Consensus 10 ~~Ya~~~~vL~el~~rlp~~~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~ 71 (400)
..+..+..++..+. ..++..+|||+|||||..+..+++. ...+|++||.|+.|+..
T Consensus 58 r~~~kL~~~l~~~~---~~~~~~~vlDiG~gtG~~t~~l~~~---ga~~v~avD~~~~~l~~ 113 (228)
T TIGR00478 58 RGGEKLKEALEEFN---IDVKNKIVLDVGSSTGGFTDCALQK---GAKEVYGVDVGYNQLAE 113 (228)
T ss_pred hhHHHHHHHHHhcC---CCCCCCEEEEcccCCCHHHHHHHHc---CCCEEEEEeCCHHHHHH
Confidence 33444444444432 2456689999999999999888753 24689999999988865
|
Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479). |
| >KOG2904 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.85 E-value=5.2e-05 Score=72.17 Aligned_cols=93 Identities=18% Similarity=0.252 Sum_probs=63.0
Q ss_pred HHHHHHHHHHHCCCCCCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCC--C-CCceeechhh
Q 015771 15 TLLVTESFARRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK--D-LPLIHSYNSI 91 (400)
Q Consensus 15 ~~~vL~el~~rlp~~~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~--~-~~~~~~~~~~ 91 (400)
+..|++++.++ ..+++..|||+|||+|+.+..+....+ ...+++||.|+.++.+|...++... + +..++... .
T Consensus 134 V~~Vid~~~~~-~~~~~~~ildlgtGSGaIslsll~~L~--~~~v~AiD~S~~Ai~La~eN~qr~~l~g~i~v~~~~m-e 209 (328)
T KOG2904|consen 134 VEAVIDALNNS-EHSKHTHILDLGTGSGAISLSLLHGLP--QCTVTAIDVSKAAIKLAKENAQRLKLSGRIEVIHNIM-E 209 (328)
T ss_pred HHHHHHHHhhh-hhcccceEEEecCCccHHHHHHHhcCC--CceEEEEeccHHHHHHHHHHHHHHhhcCceEEEeccc-c
Confidence 45677777654 345677899999999999999998887 4689999999999999998886542 1 12222100 0
Q ss_pred hHhhhhcccCCCcccEEeec
Q 015771 92 QALNKDISKSEREHDLVIAS 111 (400)
Q Consensus 92 ~~l~~~l~~~~~~~DLVias 111 (400)
.+.....+...+++|+++++
T Consensus 210 ~d~~~~~~l~~~~~dllvsN 229 (328)
T KOG2904|consen 210 SDASDEHPLLEGKIDLLVSN 229 (328)
T ss_pred cccccccccccCceeEEecC
Confidence 00100112245789999885
|
|
| >PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like | Back alignment and domain information |
|---|
Probab=97.85 E-value=7.9e-05 Score=69.15 Aligned_cols=111 Identities=22% Similarity=0.379 Sum_probs=71.5
Q ss_pred CCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCCCCceeechhhhHhhhhcccCCCcccEEee
Q 015771 31 PAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDISKSEREHDLVIA 110 (400)
Q Consensus 31 p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~~~~~~~~~~~~~l~~~l~~~~~~~DLVia 110 (400)
..+.||.|||-|..+--+. -+...+|..||+++.+++.|+.-+.... ..+...+.. .+.. +.+...+||+|.+
T Consensus 56 ~~~alDcGAGIGRVTk~lL---l~~f~~VDlVEp~~~Fl~~a~~~l~~~~--~~v~~~~~~-gLQ~-f~P~~~~YDlIW~ 128 (218)
T PF05891_consen 56 FNRALDCGAGIGRVTKGLL---LPVFDEVDLVEPVEKFLEQAKEYLGKDN--PRVGEFYCV-GLQD-FTPEEGKYDLIWI 128 (218)
T ss_dssp -SEEEEET-TTTHHHHHTC---CCC-SEEEEEES-HHHHHHHHHHTCCGG--CCEEEEEES--GGG-----TT-EEEEEE
T ss_pred cceEEecccccchhHHHHH---HHhcCEeEEeccCHHHHHHHHHHhcccC--CCcceEEec-CHhh-ccCCCCcEeEEEe
Confidence 4689999999999985432 2345799999999999999997765411 111111100 1221 2223568999999
Q ss_pred cccccCCCCHHHHHHHHHHHHhc--cCCeEEEEcCCCCCch
Q 015771 111 SYVLGEVPSLQDRITIVRQLWDL--TRDVLVLVEPGTPQGS 149 (400)
Q Consensus 111 s~~L~eL~~~~~r~~~i~~Lw~~--~gG~LVlVE~Gtp~Gf 149 (400)
-.+|.+|. ..+..+++++.-+. ++|.+|+=|+-+..|+
T Consensus 129 QW~lghLT-D~dlv~fL~RCk~~L~~~G~IvvKEN~~~~~~ 168 (218)
T PF05891_consen 129 QWCLGHLT-DEDLVAFLKRCKQALKPNGVIVVKENVSSSGF 168 (218)
T ss_dssp ES-GGGS--HHHHHHHHHHHHHHEEEEEEEEEEEEEESSSE
T ss_pred hHhhccCC-HHHHHHHHHHHHHhCcCCcEEEEEecCCCCCC
Confidence 99999997 66777777776543 7999999898777776
|
; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B. |
| >PRK10901 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.00019 Score=73.86 Aligned_cols=107 Identities=18% Similarity=0.175 Sum_probs=67.1
Q ss_pred CCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCC-CCceeechhhhHhhhhcc--cCCCccc
Q 015771 30 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKD-LPLIHSYNSIQALNKDIS--KSEREHD 106 (400)
Q Consensus 30 ~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~-~~~~~~~~~~~~l~~~l~--~~~~~~D 106 (400)
.+.+|||+|||+|..+..+++..+. .+|+++|.|+.|++.++..++..+. ...+. .+... +. ...++||
T Consensus 244 ~g~~VLDlgaG~G~~t~~la~~~~~--~~v~a~D~s~~~l~~~~~n~~~~g~~~~~~~-----~D~~~-~~~~~~~~~fD 315 (427)
T PRK10901 244 NGERVLDACAAPGGKTAHILELAPQ--AQVVALDIDAQRLERVRENLQRLGLKATVIV-----GDARD-PAQWWDGQPFD 315 (427)
T ss_pred CCCEEEEeCCCCChHHHHHHHHcCC--CEEEEEeCCHHHHHHHHHHHHHcCCCeEEEE-----cCccc-chhhcccCCCC
Confidence 4579999999999998888877642 6899999999999999998875421 11111 11111 11 1245799
Q ss_pred EEee----cc--ccc------CCCCHHH-------HHHHHHHHHhc--cCCeEEEEcCC
Q 015771 107 LVIA----SY--VLG------EVPSLQD-------RITIVRQLWDL--TRDVLVLVEPG 144 (400)
Q Consensus 107 LVia----s~--~L~------eL~~~~~-------r~~~i~~Lw~~--~gG~LVlVE~G 144 (400)
+|++ +. ++. +..+... ...++...++. +||.||+....
T Consensus 316 ~Vl~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystcs 374 (427)
T PRK10901 316 RILLDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATCS 374 (427)
T ss_pred EEEECCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCC
Confidence 9984 21 111 1111111 12455555543 89999988764
|
|
| >PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.0001 Score=75.09 Aligned_cols=121 Identities=14% Similarity=0.083 Sum_probs=68.1
Q ss_pred CCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCC----CCCceeechhhhHhhhhcccCCCcc
Q 015771 30 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK----DLPLIHSYNSIQALNKDISKSEREH 105 (400)
Q Consensus 30 ~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~----~~~~~~~~~~~~~l~~~l~~~~~~~ 105 (400)
++.+|||+|||+|..+++++. + ...++++||.|+.+++.|++.++... ++.++... ..++...+.....+|
T Consensus 220 ~g~rVLDlfsgtG~~~l~aa~--~-ga~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D--~~~~l~~~~~~~~~f 294 (396)
T PRK15128 220 ENKRVLNCFSYTGGFAVSALM--G-GCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDD--VFKLLRTYRDRGEKF 294 (396)
T ss_pred CCCeEEEeccCCCHHHHHHHh--C-CCCEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEcc--HHHHHHHHHhcCCCC
Confidence 357999999999998776542 2 34589999999999999999886432 11122221 111111111124579
Q ss_pred cEEeecccccCCCCHHHHH----------HHHHHHHhccCCeEEEEcCCCCCchHHHHHHHHHHH
Q 015771 106 DLVIASYVLGEVPSLQDRI----------TIVRQLWDLTRDVLVLVEPGTPQGSSIISQMRSHIL 160 (400)
Q Consensus 106 DLVias~~L~eL~~~~~r~----------~~i~~Lw~~~gG~LVlVE~Gtp~Gf~~I~~aR~~lL 160 (400)
|+||+.--- ...+..... ....++++ +||.|++.-.....+. ...++++.
T Consensus 295 DlVilDPP~-f~~~k~~l~~~~~~y~~l~~~a~~lLk-~gG~lv~~scs~~~~~---~~f~~~v~ 354 (396)
T PRK15128 295 DVIVMDPPK-FVENKSQLMGACRGYKDINMLAIQLLN-PGGILLTFSCSGLMTS---DLFQKIIA 354 (396)
T ss_pred CEEEECCCC-CCCChHHHHHHHHHHHHHHHHHHHHcC-CCeEEEEEeCCCcCCH---HHHHHHHH
Confidence 999975211 111111111 12223332 7999998765444443 33355544
|
|
| >PRK14904 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.00011 Score=75.99 Aligned_cols=109 Identities=16% Similarity=0.158 Sum_probs=67.6
Q ss_pred CCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCCCCceeechhhhHhhhhcccCCCcccEEe
Q 015771 30 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDISKSEREHDLVI 109 (400)
Q Consensus 30 ~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~~~~~~~~~~~~~l~~~l~~~~~~~DLVi 109 (400)
.+.+|||+|||+|..+..+++..+ ...+++++|.|+.|++.++..++..+ +..+... ..+.. .+. ....||+|+
T Consensus 250 ~g~~VLDlgaG~G~kt~~la~~~~-~~~~V~avD~s~~~l~~~~~~~~~~g-~~~v~~~--~~Da~-~~~-~~~~fD~Vl 323 (445)
T PRK14904 250 PGSTVLDLCAAPGGKSTFMAELMQ-NRGQITAVDRYPQKLEKIRSHASALG-ITIIETI--EGDAR-SFS-PEEQPDAIL 323 (445)
T ss_pred CCCEEEEECCCCCHHHHHHHHHhC-CCcEEEEEECCHHHHHHHHHHHHHhC-CCeEEEE--eCccc-ccc-cCCCCCEEE
Confidence 347999999999998877776654 23589999999999999999887542 2211110 11121 111 345799998
Q ss_pred ec---ccccCC---------CCHHH-------HHHHHHHHHhc--cCCeEEEEcCC
Q 015771 110 AS---YVLGEV---------PSLQD-------RITIVRQLWDL--TRDVLVLVEPG 144 (400)
Q Consensus 110 as---~~L~eL---------~~~~~-------r~~~i~~Lw~~--~gG~LVlVE~G 144 (400)
+- ..+..+ .+... ...++.++++. +||.||+....
T Consensus 324 ~D~Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystcs 379 (445)
T PRK14904 324 LDAPCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATCS 379 (445)
T ss_pred EcCCCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCC
Confidence 52 111111 11111 12456666654 89999998654
|
|
| >PRK14902 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.00016 Score=74.88 Aligned_cols=48 Identities=17% Similarity=0.079 Sum_probs=40.6
Q ss_pred CCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCC
Q 015771 31 PAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGP 79 (400)
Q Consensus 31 p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~ 79 (400)
+.+|||+|||+|..+..+++..+ ...+++++|.|+.+++.+++.++..
T Consensus 251 g~~VLDlgaG~G~~t~~la~~~~-~~~~v~avDi~~~~l~~~~~n~~~~ 298 (444)
T PRK14902 251 GDTVLDACAAPGGKTTHIAELLK-NTGKVVALDIHEHKLKLIEENAKRL 298 (444)
T ss_pred CCEEEEeCCCCCHHHHHHHHHhC-CCCEEEEEeCCHHHHHHHHHHHHHc
Confidence 47899999999999888887663 2358999999999999999888654
|
|
| >COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.00023 Score=68.57 Aligned_cols=113 Identities=19% Similarity=0.198 Sum_probs=73.2
Q ss_pred CCCeEEEEccchh----HHHHHHHHHCCC---CCcEEEEEeCCHHHHHHHHHhhcC---C-CCCC------ce-eec---
Q 015771 30 SPAKVLDFGAGTG----SAFWALREVWPR---SLEKVNLVEPSQSMQRAGQSLMQG---P-KDLP------LI-HSY--- 88 (400)
Q Consensus 30 ~p~~VLDvG~G~G----t~~~Al~~~~~~---~~~~v~~vD~S~~ml~~a~~ll~~---~-~~~~------~~-~~~--- 88 (400)
++.+|.-.||++| +.+.++.+.++. ...+|++.|+|..+++.|+.-.=. . .+++ +. ...
T Consensus 96 ~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~ 175 (268)
T COG1352 96 RPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGS 175 (268)
T ss_pred CceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCc
Confidence 5789999999999 455567777763 357899999999999998764421 0 1121 00 000
Q ss_pred hhh-hHhhh-------hc--cc-CCCcccEEeecccccCCCCHHHHHHHHHHHHhc--cCCeEEEEcC
Q 015771 89 NSI-QALNK-------DI--SK-SEREHDLVIASYVLGEVPSLQDRITIVRQLWDL--TRDVLVLVEP 143 (400)
Q Consensus 89 ~~~-~~l~~-------~l--~~-~~~~~DLVias~~L~eL~~~~~r~~~i~~Lw~~--~gG~LVlVE~ 143 (400)
+.+ ..+.. ++ +. ..+.||+|+|-|||-.+. ...+..+++.+... +||+|+|=-.
T Consensus 176 y~v~~~ir~~V~F~~~NLl~~~~~~~~fD~IfCRNVLIYFd-~~~q~~il~~f~~~L~~gG~LflG~s 242 (268)
T COG1352 176 YRVKEELRKMVRFRRHNLLDDSPFLGKFDLIFCRNVLIYFD-EETQERILRRFADSLKPGGLLFLGHS 242 (268)
T ss_pred EEEChHHhcccEEeecCCCCCccccCCCCEEEEcceEEeeC-HHHHHHHHHHHHHHhCCCCEEEEccC
Confidence 000 01110 11 11 346799999999999995 66667777777764 7899887533
|
|
| >TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.00029 Score=72.61 Aligned_cols=97 Identities=10% Similarity=-0.003 Sum_probs=58.3
Q ss_pred HhHHHHHHHHHHHHHHCCCCCCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCC--CCCCceee
Q 015771 10 ECLLFTLLVTESFARRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGP--KDLPLIHS 87 (400)
Q Consensus 10 ~~Ya~~~~vL~el~~rlp~~~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~--~~~~~~~~ 87 (400)
.|......++..+.+.+..-...+|||+|||+|+.++.++.. ..+|+++|.|+.|++.|+..+... .++.++..
T Consensus 272 ~N~~~~~~l~~~~~~~l~~~~~~~vLDl~cG~G~~sl~la~~----~~~V~~vE~~~~av~~a~~n~~~~~~~nv~~~~~ 347 (431)
T TIGR00479 272 VNSGQNEKLVDRALEALELQGEELVVDAYCGVGTFTLPLAKQ----AKSVVGIEVVPESVEKAQQNAELNGIANVEFLAG 347 (431)
T ss_pred cCHHHHHHHHHHHHHHhccCCCCEEEEcCCCcCHHHHHHHHh----CCEEEEEEcCHHHHHHHHHHHHHhCCCceEEEeC
Confidence 343333344444444432222369999999999999888753 358999999999999999887542 23333322
Q ss_pred chhhhHhhhhcccCCCcccEEeecc
Q 015771 88 YNSIQALNKDISKSEREHDLVIASY 112 (400)
Q Consensus 88 ~~~~~~l~~~l~~~~~~~DLVias~ 112 (400)
. .......+......||+|++.-
T Consensus 348 d--~~~~l~~~~~~~~~~D~vi~dP 370 (431)
T TIGR00479 348 T--LETVLPKQPWAGQIPDVLLLDP 370 (431)
T ss_pred C--HHHHHHHHHhcCCCCCEEEECc
Confidence 1 1111111111234699998643
|
This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA. |
| >PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.74 E-value=9.2e-05 Score=80.83 Aligned_cols=73 Identities=15% Similarity=0.043 Sum_probs=49.6
Q ss_pred CCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCC----CCceeechhhhHhhhhcccCCCccc
Q 015771 31 PAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKD----LPLIHSYNSIQALNKDISKSEREHD 106 (400)
Q Consensus 31 p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~----~~~~~~~~~~~~l~~~l~~~~~~~D 106 (400)
+.+|||+|||+|..+++++.. ...+|++||.|+.+++.|+..++..+. +.++.. +....+....++||
T Consensus 539 g~rVLDlf~gtG~~sl~aa~~---Ga~~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~-----D~~~~l~~~~~~fD 610 (702)
T PRK11783 539 GKDFLNLFAYTGTASVHAALG---GAKSTTTVDMSNTYLEWAERNFALNGLSGRQHRLIQA-----DCLAWLKEAREQFD 610 (702)
T ss_pred CCeEEEcCCCCCHHHHHHHHC---CCCEEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEc-----cHHHHHHHcCCCcC
Confidence 479999999999998877742 235799999999999999998864321 112222 11111111245899
Q ss_pred EEeec
Q 015771 107 LVIAS 111 (400)
Q Consensus 107 LVias 111 (400)
+||+.
T Consensus 611 lIilD 615 (702)
T PRK11783 611 LIFID 615 (702)
T ss_pred EEEEC
Confidence 99983
|
|
| >COG4122 Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.00024 Score=66.41 Aligned_cols=107 Identities=13% Similarity=0.156 Sum_probs=66.4
Q ss_pred CCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCCCCceeechhhhHhhhhcc-cCCCcccEE
Q 015771 30 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDIS-KSEREHDLV 108 (400)
Q Consensus 30 ~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~~~~~~~~~~~~~l~~~l~-~~~~~~DLV 108 (400)
+|++||++|.+.|-.++.++...++ ..+++.+|.++++.+.|++.++...-...+..... .+....+. ...++||+|
T Consensus 59 ~~k~iLEiGT~~GySal~mA~~l~~-~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~-gdal~~l~~~~~~~fDli 136 (219)
T COG4122 59 GPKRILEIGTAIGYSALWMALALPD-DGRLTTIERDEERAEIARENLAEAGVDDRIELLLG-GDALDVLSRLLDGSFDLV 136 (219)
T ss_pred CCceEEEeecccCHHHHHHHhhCCC-CCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEec-CcHHHHHHhccCCCccEE
Confidence 6789999999999877777777764 45999999999999999999987643222221110 01111122 245799999
Q ss_pred eecccccCCCCHHHHHHHHHHHHhccCCeEEEEcC
Q 015771 109 IASYVLGEVPSLQDRITIVRQLWDLTRDVLVLVEP 143 (400)
Q Consensus 109 ias~~L~eL~~~~~r~~~i~~Lw~~~gG~LVlVE~ 143 (400)
+.-.-=...+ .-.+.+..|++ +||.+| +++
T Consensus 137 FIDadK~~yp---~~le~~~~lLr-~GGliv-~DN 166 (219)
T COG4122 137 FIDADKADYP---EYLERALPLLR-PGGLIV-ADN 166 (219)
T ss_pred EEeCChhhCH---HHHHHHHHHhC-CCcEEE-Eee
Confidence 8765322221 22233344443 566665 443
|
|
| >PRK13256 thiopurine S-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.00048 Score=64.85 Aligned_cols=101 Identities=12% Similarity=0.032 Sum_probs=68.9
Q ss_pred CCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCC--------------CCCCceeechhhhHhh
Q 015771 30 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGP--------------KDLPLIHSYNSIQALN 95 (400)
Q Consensus 30 ~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~--------------~~~~~~~~~~~~~~l~ 95 (400)
++.+||+.|||.|.-+..+++ ...+|++||.|+..++.+.+-..-. .++.+.. .|+-
T Consensus 43 ~~~rvLvPgCGkg~D~~~LA~----~G~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~-----gD~f 113 (226)
T PRK13256 43 DSSVCLIPMCGCSIDMLFFLS----KGVKVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYV-----ADIF 113 (226)
T ss_pred CCCeEEEeCCCChHHHHHHHh----CCCcEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEE-----ccCc
Confidence 347999999999987777663 4568999999999998775521100 0111111 1211
Q ss_pred hhcc---cCCCcccEEeecccccCCCCHHHHHHHHHHHHhc--cCCeEEEE
Q 015771 96 KDIS---KSEREHDLVIASYVLGEVPSLQDRITIVRQLWDL--TRDVLVLV 141 (400)
Q Consensus 96 ~~l~---~~~~~~DLVias~~L~eL~~~~~r~~~i~~Lw~~--~gG~LVlV 141 (400)
.++ ...++||+|.-..+|..|+ ++.|.+.++.|.+. +||.++++
T Consensus 114 -~l~~~~~~~~~fD~VyDra~~~Alp-p~~R~~Y~~~l~~lL~pgg~llll 162 (226)
T PRK13256 114 -NLPKIANNLPVFDIWYDRGAYIALP-NDLRTNYAKMMLEVCSNNTQILLL 162 (226)
T ss_pred -CCCccccccCCcCeeeeehhHhcCC-HHHHHHHHHHHHHHhCCCcEEEEE
Confidence 111 1235799999999999997 78888888777764 78888877
|
|
| >PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.00033 Score=65.05 Aligned_cols=92 Identities=18% Similarity=0.236 Sum_probs=60.6
Q ss_pred HHHHHHHHHHCCCCCCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCC---CCceeechhhh
Q 015771 16 LLVTESFARRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKD---LPLIHSYNSIQ 92 (400)
Q Consensus 16 ~~vL~el~~rlp~~~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~---~~~~~~~~~~~ 92 (400)
.+.|..+.+. .+|++||++|+++|..++.++...|+ ..+++.+|.++++.+.|+..++..+. +.++.. ....
T Consensus 34 g~lL~~l~~~---~~~k~vLEIGt~~GySal~la~~l~~-~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~g-da~~ 108 (205)
T PF01596_consen 34 GQLLQMLVRL---TRPKRVLEIGTFTGYSALWLAEALPE-DGKITTIEIDPERAEIARENFRKAGLDDRIEVIEG-DALE 108 (205)
T ss_dssp HHHHHHHHHH---HT-SEEEEESTTTSHHHHHHHHTSTT-TSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES--HHH
T ss_pred HHHHHHHHHh---cCCceEEEeccccccHHHHHHHhhcc-cceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEe-ccHh
Confidence 3455555543 46789999999999998888888874 56999999999999999999875432 112221 1111
Q ss_pred Hhhhhcc-cCCCcccEEeecc
Q 015771 93 ALNKDIS-KSEREHDLVIASY 112 (400)
Q Consensus 93 ~l~~~l~-~~~~~~DLVias~ 112 (400)
.+..-.. ...++||+|+.-.
T Consensus 109 ~l~~l~~~~~~~~fD~VFiDa 129 (205)
T PF01596_consen 109 VLPELANDGEEGQFDFVFIDA 129 (205)
T ss_dssp HHHHHHHTTTTTSEEEEEEES
T ss_pred hHHHHHhccCCCceeEEEEcc
Confidence 1221111 1235899998765
|
The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A .... |
| >PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.00056 Score=66.03 Aligned_cols=111 Identities=17% Similarity=0.168 Sum_probs=77.9
Q ss_pred CCCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCC--CC-CceeechhhhHhhhhcccCCCcc
Q 015771 29 FSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK--DL-PLIHSYNSIQALNKDISKSEREH 105 (400)
Q Consensus 29 ~~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~--~~-~~~~~~~~~~~l~~~l~~~~~~~ 105 (400)
-.|.+|||+.||+|..++-+.+..+....++...|.|+..++.++.++++.+ ++ .+.... ..+ ..++.......
T Consensus 134 g~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~d--Afd-~~~l~~l~p~P 210 (311)
T PF12147_consen 134 GRPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLEDIARFEQGD--AFD-RDSLAALDPAP 210 (311)
T ss_pred CCceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecC--CCC-HhHhhccCCCC
Confidence 4678999999999999998888887656799999999999999999997642 22 111111 001 11222233467
Q ss_pred cEEeecccccCCCCHHHHHHHHHHHHhc--cCCeEEEEc
Q 015771 106 DLVIASYVLGEVPSLQDRITIVRQLWDL--TRDVLVLVE 142 (400)
Q Consensus 106 DLVias~~L~eL~~~~~r~~~i~~Lw~~--~gG~LVlVE 142 (400)
+|+|+|-...-+++...-...+..|... |||+||.--
T Consensus 211 ~l~iVsGL~ElF~Dn~lv~~sl~gl~~al~pgG~lIyTg 249 (311)
T PF12147_consen 211 TLAIVSGLYELFPDNDLVRRSLAGLARALEPGGYLIYTG 249 (311)
T ss_pred CEEEEecchhhCCcHHHHHHHHHHHHHHhCCCcEEEEcC
Confidence 9999998877777655444556666553 899999763
|
It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily. |
| >PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.00035 Score=64.57 Aligned_cols=103 Identities=17% Similarity=0.163 Sum_probs=61.3
Q ss_pred CCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCC--CCCceeechhhhHhhhhcccCCCcccEE
Q 015771 31 PAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK--DLPLIHSYNSIQALNKDISKSEREHDLV 108 (400)
Q Consensus 31 p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~--~~~~~~~~~~~~~l~~~l~~~~~~~DLV 108 (400)
..+|||+|||+|..++++... ...++++||.++.+.+.++..++... ++.++.. ++...++....+||+|
T Consensus 54 ~~~vLDl~~GsG~l~l~~lsr---~a~~V~~vE~~~~a~~~a~~Nl~~~~~~~v~~~~~-----D~~~~l~~~~~~fDlV 125 (199)
T PRK10909 54 DARCLDCFAGSGALGLEALSR---YAAGATLLEMDRAVAQQLIKNLATLKAGNARVVNT-----NALSFLAQPGTPHNVV 125 (199)
T ss_pred CCEEEEcCCCccHHHHHHHHc---CCCEEEEEECCHHHHHHHHHHHHHhCCCcEEEEEc-----hHHHHHhhcCCCceEE
Confidence 469999999999998754332 23589999999999999988876532 2222221 2222222123469999
Q ss_pred eecccccCCCCHHHHHHHHHHHHhc---cCCeEEEEcCCC
Q 015771 109 IASYVLGEVPSLQDRITIVRQLWDL---TRDVLVLVEPGT 145 (400)
Q Consensus 109 ias~~L~eL~~~~~r~~~i~~Lw~~---~gG~LVlVE~Gt 145 (400)
++.=-... .. -..++..|... ..+.+|+||...
T Consensus 126 ~~DPPy~~--g~--~~~~l~~l~~~~~l~~~~iv~ve~~~ 161 (199)
T PRK10909 126 FVDPPFRK--GL--LEETINLLEDNGWLADEALIYVESEV 161 (199)
T ss_pred EECCCCCC--Ch--HHHHHHHHHHCCCcCCCcEEEEEecC
Confidence 98643211 11 12233444331 235677788754
|
|
| >PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed | Back alignment and domain information |
|---|
Probab=97.70 E-value=6.6e-05 Score=72.62 Aligned_cols=57 Identities=19% Similarity=0.172 Sum_probs=43.1
Q ss_pred HHHHHHHHCCCCCCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcC
Q 015771 18 VTESFARRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQG 78 (400)
Q Consensus 18 vL~el~~rlp~~~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~ 78 (400)
++..+.+.+..-.+.+|||+|||+|..+..+++.. .+++++|.|+.|++.++..+..
T Consensus 30 i~~~i~~~l~~~~~~~VLEiG~G~G~lt~~L~~~~----~~v~avE~d~~~~~~~~~~~~~ 86 (272)
T PRK00274 30 ILDKIVDAAGPQPGDNVLEIGPGLGALTEPLLERA----AKVTAVEIDRDLAPILAETFAE 86 (272)
T ss_pred HHHHHHHhcCCCCcCeEEEeCCCccHHHHHHHHhC----CcEEEEECCHHHHHHHHHhhcc
Confidence 44444444433344799999999999998888653 3799999999999999887643
|
|
| >PRK10611 chemotaxis methyltransferase CheR; Provisional | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.00021 Score=69.62 Aligned_cols=112 Identities=15% Similarity=0.089 Sum_probs=69.6
Q ss_pred CCCeEEEEccchhHHH----HHHHHHCCC--CCcEEEEEeCCHHHHHHHHHhhcCC---CCCC------c----------
Q 015771 30 SPAKVLDFGAGTGSAF----WALREVWPR--SLEKVNLVEPSQSMQRAGQSLMQGP---KDLP------L---------- 84 (400)
Q Consensus 30 ~p~~VLDvG~G~Gt~~----~Al~~~~~~--~~~~v~~vD~S~~ml~~a~~ll~~~---~~~~------~---------- 84 (400)
.+.+|+..||++|--. ..+.+.++. ...+|+++|+|+.+++.|+.-.=.. .++| +
T Consensus 115 ~~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~ 194 (287)
T PRK10611 115 GEYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEG 194 (287)
T ss_pred CCEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCc
Confidence 3579999999999533 334444432 2357999999999999998753110 0111 0
Q ss_pred -eeechhh--------hHhhhhcccCCCcccEEeecccccCCCCHHHHHHHHHHHHhc--cCCeEEEEc
Q 015771 85 -IHSYNSI--------QALNKDISKSEREHDLVIASYVLGEVPSLQDRITIVRQLWDL--TRDVLVLVE 142 (400)
Q Consensus 85 -~~~~~~~--------~~l~~~l~~~~~~~DLVias~~L~eL~~~~~r~~~i~~Lw~~--~gG~LVlVE 142 (400)
......+ .++........+.||+|+|-|+|.++. .+.+..+++++.+. |||+|++=.
T Consensus 195 ~~~v~~~lr~~V~F~~~NL~~~~~~~~~~fD~I~cRNvliyF~-~~~~~~vl~~l~~~L~pgG~L~lG~ 262 (287)
T PRK10611 195 LVRVRQELANYVDFQQLNLLAKQWAVPGPFDAIFCRNVMIYFD-KTTQERILRRFVPLLKPDGLLFAGH 262 (287)
T ss_pred eEEEChHHHccCEEEcccCCCCCCccCCCcceeeHhhHHhcCC-HHHHHHHHHHHHHHhCCCcEEEEeC
Confidence 0000000 112110001246899999999999995 67788888888775 899877543
|
|
| >COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.00078 Score=63.81 Aligned_cols=114 Identities=17% Similarity=0.183 Sum_probs=79.2
Q ss_pred HHHHHCCCCCCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCCCCceeechhhhHhhhhccc
Q 015771 21 SFARRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDISK 100 (400)
Q Consensus 21 el~~rlp~~~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~~~~~~~~~~~~~l~~~l~~ 100 (400)
.|..+++-....+|||.|.|+|+++.+++...+ ...+++..|.-+++.+.|++.++.......+.. ...|+....
T Consensus 85 ~I~~~~gi~pg~rVlEAGtGSG~lt~~La~~vg-~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~--~~~Dv~~~~-- 159 (256)
T COG2519 85 YIVARLGISPGSRVLEAGTGSGALTAYLARAVG-PEGHVTTYEIREDFAKTARENLSEFGLGDRVTL--KLGDVREGI-- 159 (256)
T ss_pred HHHHHcCCCCCCEEEEcccCchHHHHHHHHhhC-CCceEEEEEecHHHHHHHHHHHHHhccccceEE--Eeccccccc--
Confidence 344454445568999999999999988886665 457999999999999999999986522111211 113333322
Q ss_pred CCCcccEEeecccccCCCCHHHHHHHHHHHHhccCCeEEEEcCCC
Q 015771 101 SEREHDLVIASYVLGEVPSLQDRITIVRQLWDLTRDVLVLVEPGT 145 (400)
Q Consensus 101 ~~~~~DLVias~~L~eL~~~~~r~~~i~~Lw~~~gG~LVlVE~Gt 145 (400)
....||.|+. .+|++.+-.+.+..+++ +||.+++.-|..
T Consensus 160 ~~~~vDav~L-----Dmp~PW~~le~~~~~Lk-pgg~~~~y~P~v 198 (256)
T COG2519 160 DEEDVDAVFL-----DLPDPWNVLEHVSDALK-PGGVVVVYSPTV 198 (256)
T ss_pred cccccCEEEE-----cCCChHHHHHHHHHHhC-CCcEEEEEcCCH
Confidence 2347888875 46777777777777774 799999887744
|
|
| >PTZ00338 dimethyladenosine transferase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.00025 Score=69.45 Aligned_cols=58 Identities=24% Similarity=0.261 Sum_probs=43.8
Q ss_pred HHHHHHHHHCCCCCCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcC
Q 015771 17 LVTESFARRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQG 78 (400)
Q Consensus 17 ~vL~el~~rlp~~~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~ 78 (400)
.++..+..........+|||+|||+|..+..+.+. ..+++++|.++.|++.+++.+..
T Consensus 23 ~i~~~Iv~~~~~~~~~~VLEIG~G~G~LT~~Ll~~----~~~V~avEiD~~li~~l~~~~~~ 80 (294)
T PTZ00338 23 LVLDKIVEKAAIKPTDTVLEIGPGTGNLTEKLLQL----AKKVIAIEIDPRMVAELKKRFQN 80 (294)
T ss_pred HHHHHHHHhcCCCCcCEEEEecCchHHHHHHHHHh----CCcEEEEECCHHHHHHHHHHHHh
Confidence 34444544443334479999999999999888754 34799999999999999987754
|
|
| >PLN02589 caffeoyl-CoA O-methyltransferase | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.00086 Score=64.01 Aligned_cols=51 Identities=16% Similarity=0.223 Sum_probs=43.2
Q ss_pred CCCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCC
Q 015771 29 FSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK 80 (400)
Q Consensus 29 ~~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~ 80 (400)
.+|++||++|+++|-.+++++...++ ..+++.+|.++++.+.|+..++..+
T Consensus 78 ~~ak~iLEiGT~~GySal~la~al~~-~g~v~tiE~~~~~~~~Ar~~~~~ag 128 (247)
T PLN02589 78 INAKNTMEIGVYTGYSLLATALALPE-DGKILAMDINRENYELGLPVIQKAG 128 (247)
T ss_pred hCCCEEEEEeChhhHHHHHHHhhCCC-CCEEEEEeCCHHHHHHHHHHHHHCC
Confidence 46789999999999888777777763 4689999999999999999997653
|
|
| >PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.00012 Score=68.56 Aligned_cols=117 Identities=17% Similarity=0.080 Sum_probs=71.1
Q ss_pred HHHHHHHHCCCCCCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcC---CCCCCceee------c
Q 015771 18 VTESFARRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQG---PKDLPLIHS------Y 88 (400)
Q Consensus 18 vL~el~~rlp~~~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~---~~~~~~~~~------~ 88 (400)
.|.++...++.-.+.+||.-|||.|.-+..+++ ...+|++||.|+..++.+.+-... ......... .
T Consensus 25 ~L~~~~~~l~~~~~~rvLvPgCG~g~D~~~La~----~G~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~ 100 (218)
T PF05724_consen 25 ALVEYLDSLALKPGGRVLVPGCGKGYDMLWLAE----QGHDVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRIT 100 (218)
T ss_dssp HHHHHHHHHTTSTSEEEEETTTTTSCHHHHHHH----TTEEEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEE
T ss_pred HHHHHHHhcCCCCCCeEEEeCCCChHHHHHHHH----CCCeEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceE
Confidence 344444443333446999999999988777774 457999999999999887332111 111111110 0
Q ss_pred hhhhHhhhhcc-cCCCcccEEeecccccCCCCHHHHHHHHHHHHhc--cCCeEEE
Q 015771 89 NSIQALNKDIS-KSEREHDLVIASYVLGEVPSLQDRITIVRQLWDL--TRDVLVL 140 (400)
Q Consensus 89 ~~~~~l~~~l~-~~~~~~DLVias~~L~eL~~~~~r~~~i~~Lw~~--~gG~LVl 140 (400)
....|+- .++ ...++||+|.=.-+|.-|+ ++.|...++.|.+. +||.+++
T Consensus 101 ~~~gDfF-~l~~~~~g~fD~iyDr~~l~Alp-p~~R~~Ya~~l~~ll~p~g~~lL 153 (218)
T PF05724_consen 101 IYCGDFF-ELPPEDVGKFDLIYDRTFLCALP-PEMRERYAQQLASLLKPGGRGLL 153 (218)
T ss_dssp EEES-TT-TGGGSCHHSEEEEEECSSTTTS--GGGHHHHHHHHHHCEEEEEEEEE
T ss_pred EEEcccc-cCChhhcCCceEEEEecccccCC-HHHHHHHHHHHHHHhCCCCcEEE
Confidence 0001111 111 1234799999999999997 78899888888875 7888333
|
Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B. |
| >PLN02672 methionine S-methyltransferase | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.00015 Score=81.54 Aligned_cols=48 Identities=21% Similarity=0.252 Sum_probs=42.2
Q ss_pred CCCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcC
Q 015771 29 FSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQG 78 (400)
Q Consensus 29 ~~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~ 78 (400)
|++.+|||+|||+|...++++..++. .+++++|+|+.+++.|+..+..
T Consensus 117 ~~~~~VLDlG~GSG~Iai~La~~~~~--~~v~avDis~~Al~~A~~Na~~ 164 (1082)
T PLN02672 117 FRDKTVAELGCGNGWISIAIAEKWLP--SKVYGLDINPRAVKVAWINLYL 164 (1082)
T ss_pred CCCCEEEEEecchHHHHHHHHHHCCC--CEEEEEECCHHHHHHHHHHHHH
Confidence 55679999999999999999988863 4899999999999999888864
|
|
| >COG3963 Phospholipid N-methyltransferase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.0012 Score=58.70 Aligned_cols=108 Identities=25% Similarity=0.256 Sum_probs=80.0
Q ss_pred CCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCCCCceeechhhhHhhhhcc-cCCCcccEE
Q 015771 30 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDIS-KSEREHDLV 108 (400)
Q Consensus 30 ~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~~~~~~~~~~~~~l~~~l~-~~~~~~DLV 108 (400)
+..-||++|.|||..+-|+...-- ....++++|.|++......++..+.+ .+... ..+++..+. .....||.|
T Consensus 48 sglpVlElGPGTGV~TkaIL~~gv-~~~~L~~iE~~~dF~~~L~~~~p~~~---ii~gd--a~~l~~~l~e~~gq~~D~v 121 (194)
T COG3963 48 SGLPVLELGPGTGVITKAILSRGV-RPESLTAIEYSPDFVCHLNQLYPGVN---IINGD--AFDLRTTLGEHKGQFFDSV 121 (194)
T ss_pred cCCeeEEEcCCccHhHHHHHhcCC-CccceEEEEeCHHHHHHHHHhCCCcc---ccccc--hhhHHHHHhhcCCCeeeeE
Confidence 346899999999999999886432 34689999999999988887776542 22211 112332222 345679999
Q ss_pred eecccccCCCCHHHHHHHHHHHHhc--cCCeEEEEcCC
Q 015771 109 IASYVLGEVPSLQDRITIVRQLWDL--TRDVLVLVEPG 144 (400)
Q Consensus 109 ias~~L~eL~~~~~r~~~i~~Lw~~--~gG~LVlVE~G 144 (400)
|++--|..+| ...+.++++++..+ .||.||.+--|
T Consensus 122 iS~lPll~~P-~~~~iaile~~~~rl~~gg~lvqftYg 158 (194)
T COG3963 122 ISGLPLLNFP-MHRRIAILESLLYRLPAGGPLVQFTYG 158 (194)
T ss_pred EeccccccCc-HHHHHHHHHHHHHhcCCCCeEEEEEec
Confidence 9999988887 77889999999876 69999988776
|
|
| >PLN02823 spermine synthase | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.00071 Score=67.46 Aligned_cols=109 Identities=17% Similarity=0.236 Sum_probs=64.8
Q ss_pred CCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCC---CCCceeechhhhHhhhhcccCCCccc
Q 015771 30 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK---DLPLIHSYNSIQALNKDISKSEREHD 106 (400)
Q Consensus 30 ~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~---~~~~~~~~~~~~~l~~~l~~~~~~~D 106 (400)
.|++||.+|+|.|..+..+.... ...++++||+++++++++++.+.... .-+.++.. ..|....+....++||
T Consensus 103 ~pk~VLiiGgG~G~~~re~l~~~--~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~--~~Da~~~L~~~~~~yD 178 (336)
T PLN02823 103 NPKTVFIMGGGEGSTAREVLRHK--TVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELI--INDARAELEKRDEKFD 178 (336)
T ss_pred CCCEEEEECCCchHHHHHHHhCC--CCCeEEEEECCHHHHHHHHHhcccccccccCCceEEE--EChhHHHHhhCCCCcc
Confidence 57899999999998887666533 34689999999999999998875321 11222111 1122222222356899
Q ss_pred EEeecccc-------cCCCCHHHHHH-HHHHHHhccCCeEEEEcCCC
Q 015771 107 LVIASYVL-------GEVPSLQDRIT-IVRQLWDLTRDVLVLVEPGT 145 (400)
Q Consensus 107 LVias~~L-------~eL~~~~~r~~-~i~~Lw~~~gG~LVlVE~Gt 145 (400)
+|++--.= ..|-+ .+-.+ .+++.++ +||++|+ ..+.
T Consensus 179 vIi~D~~dp~~~~~~~~Lyt-~eF~~~~~~~~L~-p~Gvlv~-q~~s 222 (336)
T PLN02823 179 VIIGDLADPVEGGPCYQLYT-KSFYERIVKPKLN-PGGIFVT-QAGP 222 (336)
T ss_pred EEEecCCCccccCcchhhcc-HHHHHHHHHHhcC-CCcEEEE-eccC
Confidence 99986311 11111 12223 4455553 7898764 4443
|
|
| >TIGR00095 RNA methyltransferase, RsmD family | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.002 Score=59.03 Aligned_cols=47 Identities=17% Similarity=0.011 Sum_probs=38.7
Q ss_pred CCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCC
Q 015771 30 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGP 79 (400)
Q Consensus 30 ~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~ 79 (400)
...+|||++||+|+..+.+... ....+++||.++.+++.+++.++..
T Consensus 49 ~g~~vLDLfaGsG~lglea~sr---ga~~v~~vE~~~~a~~~~~~N~~~~ 95 (189)
T TIGR00095 49 QGAHLLDVFAGSGLLGEEALSR---GAKVAFLEEDDRKANQTLKENLALL 95 (189)
T ss_pred CCCEEEEecCCCcHHHHHHHhC---CCCEEEEEeCCHHHHHHHHHHHHHh
Confidence 4579999999999998887743 2358999999999999998887643
|
This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases. |
| >PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.00098 Score=61.52 Aligned_cols=121 Identities=17% Similarity=0.263 Sum_probs=72.0
Q ss_pred HHHHHHHHCCCCCCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcC--CCCC-CceeechhhhHh
Q 015771 18 VTESFARRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQG--PKDL-PLIHSYNSIQAL 94 (400)
Q Consensus 18 vL~el~~rlp~~~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~--~~~~-~~~~~~~~~~~l 94 (400)
||+-|++.++.-. .+||+||||||.-+..++..+|. ....--|.++..+.--..-+.. ..|+ +.+.. ++
T Consensus 14 Il~vL~~~l~~~~-~~vLEiaSGtGqHa~~FA~~lP~--l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~l-----Dv 85 (204)
T PF06080_consen 14 ILEVLKQYLPDSG-TRVLEIASGTGQHAVYFAQALPH--LTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLAL-----DV 85 (204)
T ss_pred HHHHHHHHhCccC-ceEEEEcCCccHHHHHHHHHCCC--CEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEe-----ec
Confidence 3444444444321 26999999999988888888883 4688888888875322222221 1232 11111 11
Q ss_pred hhh-c------ccCCCcccEEeecccccCCCCHHHHHHHHH---HHHhccCCeEEEEcCCCCCc
Q 015771 95 NKD-I------SKSEREHDLVIASYVLGEVPSLQDRITIVR---QLWDLTRDVLVLVEPGTPQG 148 (400)
Q Consensus 95 ~~~-l------~~~~~~~DLVias~~L~eL~~~~~r~~~i~---~Lw~~~gG~LVlVE~Gtp~G 148 (400)
... . +.....||.|++.|++|-.+ ...-..++. ++++ +||.|++--|-...|
T Consensus 86 ~~~~w~~~~~~~~~~~~~D~i~~~N~lHI~p-~~~~~~lf~~a~~~L~-~gG~L~~YGPF~~~G 147 (204)
T PF06080_consen 86 SAPPWPWELPAPLSPESFDAIFCINMLHISP-WSAVEGLFAGAARLLK-PGGLLFLYGPFNRDG 147 (204)
T ss_pred CCCCCccccccccCCCCcceeeehhHHHhcC-HHHHHHHHHHHHHhCC-CCCEEEEeCCcccCC
Confidence 111 0 11346899999999999776 444444444 4443 799999887744333
|
The function of this family is unknown. |
| >PRK04148 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.00087 Score=57.88 Aligned_cols=102 Identities=15% Similarity=0.066 Sum_probs=65.1
Q ss_pred HHHHHHCCCCCCCeEEEEccchhH-HHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCCCCceeechhhhHhhhhc
Q 015771 20 ESFARRLPGFSPAKVLDFGAGTGS-AFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDI 98 (400)
Q Consensus 20 ~el~~rlp~~~p~~VLDvG~G~Gt-~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~~~~~~~~~~~~~l~~~l 98 (400)
..|...++..++.+|||+|||+|. .+..+.+ ...+|+++|.|+...+.++...- ..+.. |+...-
T Consensus 6 ~~l~~~~~~~~~~kileIG~GfG~~vA~~L~~----~G~~ViaIDi~~~aV~~a~~~~~-----~~v~d-----Dlf~p~ 71 (134)
T PRK04148 6 EFIAENYEKGKNKKIVELGIGFYFKVAKKLKE----SGFDVIVIDINEKAVEKAKKLGL-----NAFVD-----DLFNPN 71 (134)
T ss_pred HHHHHhcccccCCEEEEEEecCCHHHHHHHHH----CCCEEEEEECCHHHHHHHHHhCC-----eEEEC-----cCCCCC
Confidence 345555566667899999999996 5555552 34699999999999888776532 11211 121100
Q ss_pred ccCCCcccEEeecccccCCCCHHHHHHHHHHHHhccCCeEEEE
Q 015771 99 SKSEREHDLVIASYVLGEVPSLQDRITIVRQLWDLTRDVLVLV 141 (400)
Q Consensus 99 ~~~~~~~DLVias~~L~eL~~~~~r~~~i~~Lw~~~gG~LVlV 141 (400)
...-+.+|+|.+..- +.+....+.+|.++-+.-|+|.
T Consensus 72 ~~~y~~a~liysirp------p~el~~~~~~la~~~~~~~~i~ 108 (134)
T PRK04148 72 LEIYKNAKLIYSIRP------PRDLQPFILELAKKINVPLIIK 108 (134)
T ss_pred HHHHhcCCEEEEeCC------CHHHHHHHHHHHHHcCCCEEEE
Confidence 112356899887663 4455667778887766677765
|
|
| >PRK11727 23S rRNA mA1618 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.00049 Score=68.07 Aligned_cols=84 Identities=14% Similarity=0.122 Sum_probs=52.2
Q ss_pred CCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCCCC-ceeec--hhhhHhhhhcccCCCccc
Q 015771 30 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLP-LIHSY--NSIQALNKDISKSEREHD 106 (400)
Q Consensus 30 ~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~~~-~~~~~--~~~~~l~~~l~~~~~~~D 106 (400)
...+|||||||+|.....+....+ ..+++++|+++.+++.|+..++...++. .+... ....++...+....+.||
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~~~~--~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I~~~~~~~~~~i~~~i~~~~~~fD 191 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGVHEY--GWRFVGSDIDPQALASAQAIISANPGLNGAIRLRLQKDSKAIFKGIIHKNERFD 191 (321)
T ss_pred CCceEEEecCCccHHHHHHHhhCC--CCEEEEEeCCHHHHHHHHHHHHhccCCcCcEEEEEccchhhhhhcccccCCceE
Confidence 447999999999866555444333 3579999999999999999987642221 11110 011122212212356899
Q ss_pred EEeeccccc
Q 015771 107 LVIASYVLG 115 (400)
Q Consensus 107 LVias~~L~ 115 (400)
+|+|+==++
T Consensus 192 livcNPPf~ 200 (321)
T PRK11727 192 ATLCNPPFH 200 (321)
T ss_pred EEEeCCCCc
Confidence 999975444
|
|
| >KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription] | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.0012 Score=64.71 Aligned_cols=77 Identities=27% Similarity=0.366 Sum_probs=51.5
Q ss_pred CCCCCCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCCC-CceeechhhhHhhhhcccCCCc
Q 015771 26 LPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDL-PLIHSYNSIQALNKDISKSERE 104 (400)
Q Consensus 26 lp~~~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~~-~~~~~~~~~~~l~~~l~~~~~~ 104 (400)
..+|+.+.|||+|||+|.+.+.++.. ...+|++||.| +|.+.|+.+++.. ++ ..+... -..++ .+. ..++
T Consensus 173 ~sDF~~kiVlDVGaGSGILS~FAaqA---GA~~vYAvEAS-~MAqyA~~Lv~~N-~~~~rItVI--~GKiE-die-LPEk 243 (517)
T KOG1500|consen 173 HSDFQDKIVLDVGAGSGILSFFAAQA---GAKKVYAVEAS-EMAQYARKLVASN-NLADRITVI--PGKIE-DIE-LPEK 243 (517)
T ss_pred ccccCCcEEEEecCCccHHHHHHHHh---CcceEEEEehh-HHHHHHHHHHhcC-CccceEEEc--cCccc-ccc-Cchh
Confidence 35799999999999999987665542 56799999986 6889999998764 32 112110 01111 121 3468
Q ss_pred ccEEeec
Q 015771 105 HDLVIAS 111 (400)
Q Consensus 105 ~DLVias 111 (400)
.|+||+-
T Consensus 244 ~DviISE 250 (517)
T KOG1500|consen 244 VDVIISE 250 (517)
T ss_pred ccEEEec
Confidence 9999874
|
|
| >KOG2940 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.00022 Score=66.32 Aligned_cols=114 Identities=16% Similarity=0.242 Sum_probs=77.1
Q ss_pred CeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCCCCceeechhhhHhhhhcccCCCcccEEeec
Q 015771 32 AKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDISKSEREHDLVIAS 111 (400)
Q Consensus 32 ~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~~~~~~~~~~~~~l~~~l~~~~~~~DLVias 111 (400)
..++|+|||-|....-+.. +...+++.+|.|-.|++-++..-. +.+. ......+ ...+++.++++||||+|
T Consensus 74 p~a~diGcs~G~v~rhl~~---e~vekli~~DtS~~M~~s~~~~qd--p~i~---~~~~v~D-EE~Ldf~ens~DLiisS 144 (325)
T KOG2940|consen 74 PTAFDIGCSLGAVKRHLRG---EGVEKLIMMDTSYDMIKSCRDAQD--PSIE---TSYFVGD-EEFLDFKENSVDLIISS 144 (325)
T ss_pred cceeecccchhhhhHHHHh---cchhheeeeecchHHHHHhhccCC--CceE---EEEEecc-hhcccccccchhhhhhh
Confidence 4799999999998765543 567899999999999998875322 1221 1111111 22455677899999999
Q ss_pred ccccCCCCHHHHHHHHHHHHhccCCeEEEEcCCCCCchHHHHHHHHHH
Q 015771 112 YVLGEVPSLQDRITIVRQLWDLTRDVLVLVEPGTPQGSSIISQMRSHI 159 (400)
Q Consensus 112 ~~L~eL~~~~~r~~~i~~Lw~~~gG~LVlVE~Gtp~Gf~~I~~aR~~l 159 (400)
.+||+..+...-..-.+..+ +|+|.+|-. --|...+-++|--+
T Consensus 145 lslHW~NdLPg~m~~ck~~l-KPDg~Fias----mlggdTLyELR~sl 187 (325)
T KOG2940|consen 145 LSLHWTNDLPGSMIQCKLAL-KPDGLFIAS----MLGGDTLYELRCSL 187 (325)
T ss_pred hhhhhhccCchHHHHHHHhc-CCCccchhH----HhccccHHHHHHHh
Confidence 99998876555555555555 478887733 34556666777654
|
|
| >KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.00048 Score=67.90 Aligned_cols=81 Identities=21% Similarity=0.226 Sum_probs=52.1
Q ss_pred CCCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCCCCceeechhhhHhhhhcccCCCcccEE
Q 015771 29 FSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDISKSEREHDLV 108 (400)
Q Consensus 29 ~~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~~~~~~~~~~~~~l~~~l~~~~~~~DLV 108 (400)
|+.+.|||+|||+|.+...+++. ...+|++||.|.-+ +.|.+++........+... ...+. .+..+.++.|+|
T Consensus 59 f~dK~VlDVGcGtGILS~F~akA---GA~~V~aVe~S~ia-~~a~~iv~~N~~~~ii~vi--~gkvE-di~LP~eKVDiI 131 (346)
T KOG1499|consen 59 FKDKTVLDVGCGTGILSMFAAKA---GARKVYAVEASSIA-DFARKIVKDNGLEDVITVI--KGKVE-DIELPVEKVDII 131 (346)
T ss_pred cCCCEEEEcCCCccHHHHHHHHh---CcceEEEEechHHH-HHHHHHHHhcCccceEEEe--ecceE-EEecCccceeEE
Confidence 78899999999999887655543 35789999987655 8888888654322222211 01111 112235789999
Q ss_pred eecccccC
Q 015771 109 IASYVLGE 116 (400)
Q Consensus 109 ias~~L~e 116 (400)
|+-++=..
T Consensus 132 vSEWMGy~ 139 (346)
T KOG1499|consen 132 VSEWMGYF 139 (346)
T ss_pred eehhhhHH
Confidence 98665333
|
|
| >KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.0014 Score=64.02 Aligned_cols=121 Identities=14% Similarity=0.199 Sum_probs=76.8
Q ss_pred CeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCC-----C---CceeechhhhHhhhhcccCCC
Q 015771 32 AKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKD-----L---PLIHSYNSIQALNKDISKSER 103 (400)
Q Consensus 32 ~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~-----~---~~~~~~~~~~~l~~~l~~~~~ 103 (400)
..+||+|||-|.-++-.-. .....++++|++.--++.|+...++..+ + .++....+...+...++....
T Consensus 119 ~~~~~LgCGKGGDLlKw~k---AgI~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~~e~~dp 195 (389)
T KOG1975|consen 119 DDVLDLGCGKGGDLLKWDK---AGIGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDLLEFKDP 195 (389)
T ss_pred cccceeccCCcccHhHhhh---hcccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHhccCCCC
Confidence 5799999998865432111 2567899999999888888777654211 1 112222212223333333333
Q ss_pred cccEEeecccccCCCC-HHHHHHHHHHHHhc--cCCeEEEEcCCCCCchHHHHHHHHH
Q 015771 104 EHDLVIASYVLGEVPS-LQDRITIVRQLWDL--TRDVLVLVEPGTPQGSSIISQMRSH 158 (400)
Q Consensus 104 ~~DLVias~~L~eL~~-~~~r~~~i~~Lw~~--~gG~LVlVE~Gtp~Gf~~I~~aR~~ 158 (400)
+||||-|.+++|.--. .+....++++..+. |||++|- ..|..+..|..+|+.
T Consensus 196 ~fDivScQF~~HYaFetee~ar~~l~Nva~~LkpGG~FIg---TiPdsd~Ii~rlr~~ 250 (389)
T KOG1975|consen 196 RFDIVSCQFAFHYAFETEESARIALRNVAKCLKPGGVFIG---TIPDSDVIIKRLRAG 250 (389)
T ss_pred CcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCCcEEEE---ecCcHHHHHHHHHhc
Confidence 4999999999987643 33344566666654 8999983 247888888777766
|
|
| >PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.0018 Score=63.30 Aligned_cols=92 Identities=12% Similarity=0.089 Sum_probs=59.0
Q ss_pred HHHHHHHCCCCCCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCCCCceeechhhhHhhhhc
Q 015771 19 TESFARRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDI 98 (400)
Q Consensus 19 L~el~~rlp~~~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~~~~~~~~~~~~~l~~~l 98 (400)
|.|+-..+..-.+..+||.+||.|.-+.++++..+ ...+|+++|.++.|++.++..+.....+..++.. ..++...+
T Consensus 8 l~Evl~~L~~~pg~~vlD~TlG~GGhS~~il~~~~-~~g~VigiD~D~~al~~ak~~L~~~~ri~~i~~~--f~~l~~~l 84 (296)
T PRK00050 8 LDEVVDALAIKPDGIYVDGTFGGGGHSRAILERLG-PKGRLIAIDRDPDAIAAAKDRLKPFGRFTLVHGN--FSNLKEVL 84 (296)
T ss_pred HHHHHHhhCCCCCCEEEEeCcCChHHHHHHHHhCC-CCCEEEEEcCCHHHHHHHHHhhccCCcEEEEeCC--HHHHHHHH
Confidence 45555554322336999999999999999998775 3468999999999999999887652223333332 22222222
Q ss_pred ccCCCcccEEeeccc
Q 015771 99 SKSEREHDLVIASYV 113 (400)
Q Consensus 99 ~~~~~~~DLVias~~ 113 (400)
+..-.++|.|++-..
T Consensus 85 ~~~~~~vDgIl~DLG 99 (296)
T PRK00050 85 AEGLGKVDGILLDLG 99 (296)
T ss_pred HcCCCccCEEEECCC
Confidence 211126787766443
|
|
| >KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.005 Score=60.90 Aligned_cols=99 Identities=17% Similarity=0.282 Sum_probs=69.7
Q ss_pred CeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHH-HHHHhhcCCCCCCceeechhhhHhhhhcccCCCcccEEee
Q 015771 32 AKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQR-AGQSLMQGPKDLPLIHSYNSIQALNKDISKSEREHDLVIA 110 (400)
Q Consensus 32 ~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~-~a~~ll~~~~~~~~~~~~~~~~~l~~~l~~~~~~~DLVia 110 (400)
...+|+|+|.|..+-.+...|| .+-+++.....+- .+..+.. .+..+.. +.-+++| +-|+|++
T Consensus 179 ~~avDvGgGiG~v~k~ll~~fp----~ik~infdlp~v~~~a~~~~~---gV~~v~g-----dmfq~~P----~~daI~m 242 (342)
T KOG3178|consen 179 NVAVDVGGGIGRVLKNLLSKYP----HIKGINFDLPFVLAAAPYLAP---GVEHVAG-----DMFQDTP----KGDAIWM 242 (342)
T ss_pred ceEEEcCCcHhHHHHHHHHhCC----CCceeecCHHHHHhhhhhhcC---Ccceecc-----cccccCC----CcCeEEE
Confidence 6899999999999988777776 3667777666544 4444321 1221111 1111233 4579999
Q ss_pred cccccCCCCHHHHHHHHHHHHhc--cCCeEEEEcCCCCC
Q 015771 111 SYVLGEVPSLQDRITIVRQLWDL--TRDVLVLVEPGTPQ 147 (400)
Q Consensus 111 s~~L~eL~~~~~r~~~i~~Lw~~--~gG~LVlVE~Gtp~ 147 (400)
-.+|++++ .++-..++++.|+. ++|.+|++|.=+|.
T Consensus 243 kWiLhdwt-DedcvkiLknC~~sL~~~GkIiv~E~V~p~ 280 (342)
T KOG3178|consen 243 KWILHDWT-DEDCVKILKNCKKSLPPGGKIIVVENVTPE 280 (342)
T ss_pred EeecccCC-hHHHHHHHHHHHHhCCCCCEEEEEeccCCC
Confidence 99999997 66788999999986 79999999996664
|
|
| >PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase [] | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.00058 Score=70.67 Aligned_cols=100 Identities=19% Similarity=0.259 Sum_probs=56.3
Q ss_pred CCCeEEEEccchhHHHHHHHHHCC--CCCcEEEEEeCCHHHHHHHHHhhc--CCCC-CCceeechhhhHhhhhcccCCCc
Q 015771 30 SPAKVLDFGAGTGSAFWALREVWP--RSLEKVNLVEPSQSMQRAGQSLMQ--GPKD-LPLIHSYNSIQALNKDISKSERE 104 (400)
Q Consensus 30 ~p~~VLDvG~G~Gt~~~Al~~~~~--~~~~~v~~vD~S~~ml~~a~~ll~--~~~~-~~~~~~~~~~~~l~~~l~~~~~~ 104 (400)
+...|||+|||+|.++..+..... ....+|++||.|+.+....+.++. ...+ +.+++. ++. .+. ...+
T Consensus 186 ~~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w~~~V~vi~~-----d~r-~v~-lpek 258 (448)
T PF05185_consen 186 KDKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGWGDKVTVIHG-----DMR-EVE-LPEK 258 (448)
T ss_dssp TT-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTTTTTEEEEES------TT-TSC-HSS-
T ss_pred cceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCCCCeEEEEeC-----ccc-CCC-CCCc
Confidence 357899999999998765443220 135699999999988777666533 2222 222322 222 121 2358
Q ss_pred ccEEee----cccccCCCCHHHHHHHHHHHHhccCCeEE
Q 015771 105 HDLVIA----SYVLGEVPSLQDRITIVRQLWDLTRDVLV 139 (400)
Q Consensus 105 ~DLVia----s~~L~eL~~~~~r~~~i~~Lw~~~gG~LV 139 (400)
+|+||+ ++..+|+. ++ -+...++.+ +++|.+|
T Consensus 259 vDIIVSElLGsfg~nEl~-pE-~Lda~~rfL-kp~Gi~I 294 (448)
T PF05185_consen 259 VDIIVSELLGSFGDNELS-PE-CLDAADRFL-KPDGIMI 294 (448)
T ss_dssp EEEEEE---BTTBTTTSH-HH-HHHHGGGGE-EEEEEEE
T ss_pred eeEEEEeccCCccccccC-HH-HHHHHHhhc-CCCCEEe
Confidence 999987 55667763 32 233444444 3566655
|
These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B .... |
| >TIGR03439 methyl_EasF probable methyltransferase domain, EasF family | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.012 Score=58.28 Aligned_cols=123 Identities=9% Similarity=0.144 Sum_probs=74.2
Q ss_pred HHHHHHHHHHHCCCCCCCeEEEEccchhHHHHHHHHHCCC--CCcEEEEEeCCHHHHHHHHHhhcCCCCCCceeechhhh
Q 015771 15 TLLVTESFARRLPGFSPAKVLDFGAGTGSAFWALREVWPR--SLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQ 92 (400)
Q Consensus 15 ~~~vL~el~~rlp~~~p~~VLDvG~G~Gt~~~Al~~~~~~--~~~~v~~vD~S~~ml~~a~~ll~~~~~~~~~~~~~~~~ 92 (400)
+.+...+|...++. +..|+|+|||.|.=+.-+.+.+.. ....|+.||+|.++++.+...+... ..|.+....-+.
T Consensus 63 L~~~~~~Ia~~i~~--~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~-~~p~l~v~~l~g 139 (319)
T TIGR03439 63 LKKHSSDIAASIPS--GSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLG-NFSHVRCAGLLG 139 (319)
T ss_pred HHHHHHHHHHhcCC--CCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhc-cCCCeEEEEEEe
Confidence 34445666766653 348999999999765544444421 2468999999999999887777611 223222211112
Q ss_pred Hhhhh---ccc--CCCcccEEe-ecccccCCCCHHHHHHHHHHHHh-c--cCCeEEEE
Q 015771 93 ALNKD---ISK--SEREHDLVI-ASYVLGEVPSLQDRITIVRQLWD-L--TRDVLVLV 141 (400)
Q Consensus 93 ~l~~~---l~~--~~~~~DLVi-as~~L~eL~~~~~r~~~i~~Lw~-~--~gG~LVlV 141 (400)
++... ++. ......+|+ .+.++.+++ +.+...+++++.+ . ++|.|+|-
T Consensus 140 dy~~~l~~l~~~~~~~~~r~~~flGSsiGNf~-~~ea~~fL~~~~~~~l~~~d~lLiG 196 (319)
T TIGR03439 140 TYDDGLAWLKRPENRSRPTTILWLGSSIGNFS-RPEAAAFLAGFLATALSPSDSFLIG 196 (319)
T ss_pred cHHHHHhhcccccccCCccEEEEeCccccCCC-HHHHHHHHHHHHHhhCCCCCEEEEe
Confidence 22221 111 122345554 567999986 6777888888876 3 67776663
|
This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781). |
| >PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA [] | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.0023 Score=61.02 Aligned_cols=113 Identities=15% Similarity=0.146 Sum_probs=72.2
Q ss_pred CCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCCCCceeechhhhHhh-hhcc-cCCCcccE
Q 015771 30 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALN-KDIS-KSEREHDL 107 (400)
Q Consensus 30 ~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~~~~~~~~~~~~~l~-~~l~-~~~~~~DL 107 (400)
.+.+||+.|.|+|+++.+++...+ ...+|+..|..++..+.|++.++......++.. ...++. ..+. .....+|.
T Consensus 40 pG~~VlEaGtGSG~lt~~l~r~v~-p~G~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~--~~~Dv~~~g~~~~~~~~~Da 116 (247)
T PF08704_consen 40 PGSRVLEAGTGSGSLTHALARAVG-PTGHVYTYEFREDRAEKARKNFERHGLDDNVTV--HHRDVCEEGFDEELESDFDA 116 (247)
T ss_dssp TT-EEEEE--TTSHHHHHHHHHHT-TTSEEEEEESSHHHHHHHHHHHHHTTCCTTEEE--EES-GGCG--STT-TTSEEE
T ss_pred CCCEEEEecCCcHHHHHHHHHHhC-CCeEEEccccCHHHHHHHHHHHHHcCCCCCcee--EecceecccccccccCcccE
Confidence 347999999999999999887665 346899999999999999999986532222221 112332 1221 12356887
Q ss_pred EeecccccCCCCHHHHHHHHHHHHhccCCeEEEEcCCCCCchH
Q 015771 108 VIASYVLGEVPSLQDRITIVRQLWDLTRDVLVLVEPGTPQGSS 150 (400)
Q Consensus 108 Vias~~L~eL~~~~~r~~~i~~Lw~~~gG~LVlVE~Gtp~Gf~ 150 (400)
|+. .||++......+.+.++++||.|+..-|-...--+
T Consensus 117 vfL-----Dlp~Pw~~i~~~~~~L~~~gG~i~~fsP~ieQv~~ 154 (247)
T PF08704_consen 117 VFL-----DLPDPWEAIPHAKRALKKPGGRICCFSPCIEQVQK 154 (247)
T ss_dssp EEE-----ESSSGGGGHHHHHHHE-EEEEEEEEEESSHHHHHH
T ss_pred EEE-----eCCCHHHHHHHHHHHHhcCCceEEEECCCHHHHHH
Confidence 664 57777766666666665579999988775433333
|
; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A. |
| >PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.0019 Score=61.86 Aligned_cols=126 Identities=16% Similarity=0.262 Sum_probs=69.8
Q ss_pred HHHHHHHHHHHCC--CCCCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCCCC---cee---
Q 015771 15 TLLVTESFARRLP--GFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLP---LIH--- 86 (400)
Q Consensus 15 ~~~vL~el~~rlp--~~~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~~~---~~~--- 86 (400)
+...|..+.+.+. ..++.++||||||| +...++. .- +...+|++.|.++.-++..++=++...... +..
T Consensus 39 ~~~~L~~l~~~f~~g~~~g~~llDiGsGP-tiy~~ls-a~-~~f~~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~~~v~ 115 (256)
T PF01234_consen 39 LLFFLKNLHETFSSGGVKGETLLDIGSGP-TIYQLLS-AC-EWFEEIVLSDYSEQNREELEKWLRKEGAFDWSPFWKYVC 115 (256)
T ss_dssp HHHHHHHHHHHHHTSSS-EEEEEEES-TT---GGGTT-GG-GTEEEEEEEESSHHHHHHHHHHHTT-TS--THHHHHHHH
T ss_pred HHHHHHHHHHHhCccCcCCCEEEEeCCCc-HHHhhhh-HH-HhhcceEEeeccHhhHHHHHHHHCCCCCCCccHHHHHHH
Confidence 3335555555542 45667999999999 3322221 11 245789999999988776666555431111 100
Q ss_pred ---ec-hhh----h------------Hhhhh--ccc---CCCcccEEeecccccCCC-CHHHHHHHHHHHHhc--cCCeE
Q 015771 87 ---SY-NSI----Q------------ALNKD--ISK---SEREHDLVIASYVLGEVP-SLQDRITIVRQLWDL--TRDVL 138 (400)
Q Consensus 87 ---~~-~~~----~------------~l~~~--l~~---~~~~~DLVias~~L~eL~-~~~~r~~~i~~Lw~~--~gG~L 138 (400)
.. ..+ . ++.+. +.. ...+||+|+++++|.... +.++=...++++.+. |||+|
T Consensus 116 ~lEg~~~~~~e~e~~lR~~Vk~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG~L 195 (256)
T PF01234_consen 116 ELEGKREKWEEKEEKLRRAVKQVVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESACKDLDEYRRALRNISSLLKPGGHL 195 (256)
T ss_dssp HHTTSSSGHHHHHHHHHHHEEEEEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEE
T ss_pred hccCCcchhhhHHHHHHHhhceEEEeeccCCCCCCccccCccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCcEE
Confidence 00 000 0 11110 111 123599999999997653 455556788888775 89999
Q ss_pred EEEcC
Q 015771 139 VLVEP 143 (400)
Q Consensus 139 VlVE~ 143 (400)
|++.-
T Consensus 196 il~~~ 200 (256)
T PF01234_consen 196 ILAGV 200 (256)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 98854
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A .... |
| >PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.00078 Score=69.39 Aligned_cols=110 Identities=17% Similarity=0.168 Sum_probs=63.2
Q ss_pred HHHHHHHHCCC--C--CCCeEEEEccchhHHHHHHHHHCCCCCcEEEEE-----eCCHHHHHHHHHhhcCCCCCCceeec
Q 015771 18 VTESFARRLPG--F--SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLV-----EPSQSMQRAGQSLMQGPKDLPLIHSY 88 (400)
Q Consensus 18 vL~el~~rlp~--~--~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~v-----D~S~~ml~~a~~ll~~~~~~~~~~~~ 88 (400)
.++.|.+-++. + .-..+||+|||+|++...+.+ . .|+.+ |..+...+.|.+ + .+|.+-..
T Consensus 101 Yid~i~~~~~~~~~~g~iR~~LDvGcG~aSF~a~l~~----r--~V~t~s~a~~d~~~~qvqfale---R--Gvpa~~~~ 169 (506)
T PF03141_consen 101 YIDQIAEMIPLIKWGGGIRTALDVGCGVASFGAYLLE----R--NVTTMSFAPNDEHEAQVQFALE---R--GVPAMIGV 169 (506)
T ss_pred HHHHHHHHhhccccCCceEEEEeccceeehhHHHHhh----C--CceEEEcccccCCchhhhhhhh---c--Ccchhhhh
Confidence 34455555544 2 235789999999998766663 1 23333 333333333322 1 24432111
Q ss_pred hhhhHhhhhcccCCCcccEEeecccccCCCCHHH-HHHHHHHHHhccCCeEEEEcC
Q 015771 89 NSIQALNKDISKSEREHDLVIASYVLGEVPSLQD-RITIVRQLWDLTRDVLVLVEP 143 (400)
Q Consensus 89 ~~~~~l~~~l~~~~~~~DLVias~~L~eL~~~~~-r~~~i~~Lw~~~gG~LVlVE~ 143 (400)
-..+.+|.+.+.||+|-|+.++..-..... .+--+.++++ |||++|+.-|
T Consensus 170 ----~~s~rLPfp~~~fDmvHcsrc~i~W~~~~g~~l~evdRvLR-pGGyfv~S~p 220 (506)
T PF03141_consen 170 ----LGSQRLPFPSNAFDMVHCSRCLIPWHPNDGFLLFEVDRVLR-PGGYFVLSGP 220 (506)
T ss_pred ----hccccccCCccchhhhhcccccccchhcccceeehhhhhhc-cCceEEecCC
Confidence 013456778899999999998864432221 2234567775 8999998866
|
; GO: 0008168 methyltransferase activity |
| >TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.0017 Score=65.18 Aligned_cols=64 Identities=17% Similarity=0.115 Sum_probs=46.3
Q ss_pred HhHHHHHHHHHHHHHHCCCCCCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcC
Q 015771 10 ECLLFTLLVTESFARRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQG 78 (400)
Q Consensus 10 ~~Ya~~~~vL~el~~rlp~~~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~ 78 (400)
.|.......+..+.+.+. ..+.+|||+|||+|+.+++++... .+|++||.|++|++.|++.+..
T Consensus 178 ~N~~~~~~l~~~v~~~~~-~~~~~vlDl~~G~G~~sl~la~~~----~~v~~vE~~~~av~~a~~n~~~ 241 (353)
T TIGR02143 178 PNAAVNIKMLEWACEVTQ-GSKGDLLELYCGNGNFSLALAQNF----RRVLATEIAKPSVNAAQYNIAA 241 (353)
T ss_pred CCHHHHHHHHHHHHHHhh-cCCCcEEEEeccccHHHHHHHHhC----CEEEEEECCHHHHHHHHHHHHH
Confidence 344444444555554432 123479999999999999888543 4899999999999999988754
|
This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA. |
| >PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.003 Score=58.65 Aligned_cols=92 Identities=17% Similarity=0.263 Sum_probs=59.8
Q ss_pred CCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCCCCceeechhhhHhhhhcc-cCCCcccEEe
Q 015771 31 PAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDIS-KSEREHDLVI 109 (400)
Q Consensus 31 p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~~~~~~~~~~~~~l~~~l~-~~~~~~DLVi 109 (400)
+.++|||||=......... ...+|+.||.++. ...+..+. .+...+| ...++||+|+
T Consensus 52 ~lrlLEVGals~~N~~s~~-----~~fdvt~IDLns~-------------~~~I~qqD----Fm~rplp~~~~e~FdvIs 109 (219)
T PF11968_consen 52 KLRLLEVGALSTDNACSTS-----GWFDVTRIDLNSQ-------------HPGILQQD----FMERPLPKNESEKFDVIS 109 (219)
T ss_pred cceEEeecccCCCCccccc-----CceeeEEeecCCC-------------CCCceeec----cccCCCCCCcccceeEEE
Confidence 3699999987443322222 2345999997652 11111211 1222333 2457899999
Q ss_pred ecccccCCCCHHHHHHHHHHHHhc--cCCe-----EEEEcCC
Q 015771 110 ASYVLGEVPSLQDRITIVRQLWDL--TRDV-----LVLVEPG 144 (400)
Q Consensus 110 as~~L~eL~~~~~r~~~i~~Lw~~--~gG~-----LVlVE~G 144 (400)
+|.||+.+|++.+|-+.++...+. ++|. |.||=|-
T Consensus 110 ~SLVLNfVP~p~~RG~Ml~r~~~fL~~~g~~~~~~LFlVlP~ 151 (219)
T PF11968_consen 110 LSLVLNFVPDPKQRGEMLRRAHKFLKPPGLSLFPSLFLVLPL 151 (219)
T ss_pred EEEEEeeCCCHHHHHHHHHHHHHHhCCCCccCcceEEEEeCc
Confidence 999999999999998877766543 7888 8888663
|
|
| >COG3897 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.0063 Score=55.60 Aligned_cols=104 Identities=21% Similarity=0.262 Sum_probs=62.6
Q ss_pred CCCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCC-CCCceeechhhhHhhhhcccCCCcccE
Q 015771 29 FSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK-DLPLIHSYNSIQALNKDISKSEREHDL 107 (400)
Q Consensus 29 ~~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~-~~~~~~~~~~~~~l~~~l~~~~~~~DL 107 (400)
...++|||+|+|+|...+|++.. ....++..|+.+..........+... ++.+++. + .+. ....+|+
T Consensus 78 VrgkrVLd~gagsgLvaIAaa~a---GA~~v~a~d~~P~~~~ai~lNa~angv~i~~~~~-----d---~~g-~~~~~Dl 145 (218)
T COG3897 78 VRGKRVLDLGAGSGLVAIAAARA---GAAEVVAADIDPWLEQAIRLNAAANGVSILFTHA-----D---LIG-SPPAFDL 145 (218)
T ss_pred cccceeeecccccChHHHHHHHh---hhHHHHhcCCChHHHHHhhcchhhccceeEEeec-----c---ccC-CCcceeE
Confidence 45689999999999988876632 34678888998877666555444321 1111111 1 122 5568999
Q ss_pred EeecccccCCCCHHHH-HHHHHHHHhccCCeEEEEcCCCC
Q 015771 108 VIASYVLGEVPSLQDR-ITIVRQLWDLTRDVLVLVEPGTP 146 (400)
Q Consensus 108 Vias~~L~eL~~~~~r-~~~i~~Lw~~~gG~LVlVE~Gtp 146 (400)
|+++-++.+=+ ..+| +.....+.. .|-.+++-+||-+
T Consensus 146 ~LagDlfy~~~-~a~~l~~~~~~l~~-~g~~vlvgdp~R~ 183 (218)
T COG3897 146 LLAGDLFYNHT-EADRLIPWKDRLAE-AGAAVLVGDPGRA 183 (218)
T ss_pred EEeeceecCch-HHHHHHHHHHHHHh-CCCEEEEeCCCCC
Confidence 99999887654 3333 333444433 2344444466643
|
|
| >KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.0045 Score=57.07 Aligned_cols=100 Identities=16% Similarity=0.119 Sum_probs=63.0
Q ss_pred CeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCCCC-----ceeec--hhhhHhhhhcccCCCc
Q 015771 32 AKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLP-----LIHSY--NSIQALNKDISKSERE 104 (400)
Q Consensus 32 ~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~~~-----~~~~~--~~~~~l~~~l~~~~~~ 104 (400)
.+.||+|+|+|-++-.+....+......++||.-+++++.+++.+...-..+ +-... ....+-.. ......+
T Consensus 84 ~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivvGDgr~-g~~e~a~ 162 (237)
T KOG1661|consen 84 ASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIVVGDGRK-GYAEQAP 162 (237)
T ss_pred cceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEEeCCccc-cCCccCC
Confidence 5899999999987766554444444556999999999999999886432100 00000 00011111 1234678
Q ss_pred ccEEeecccccCCCCHHHHHHHHHHHHhccCCeEE
Q 015771 105 HDLVIASYVLGEVPSLQDRITIVRQLWDLTRDVLV 139 (400)
Q Consensus 105 ~DLVias~~L~eL~~~~~r~~~i~~Lw~~~gG~LV 139 (400)
||-|.+.-.-.+++ ++++.+|. +||.||
T Consensus 163 YDaIhvGAaa~~~p-----q~l~dqL~--~gGrll 190 (237)
T KOG1661|consen 163 YDAIHVGAAASELP-----QELLDQLK--PGGRLL 190 (237)
T ss_pred cceEEEccCccccH-----HHHHHhhc--cCCeEE
Confidence 99999997777765 45777775 455554
|
|
| >KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.0061 Score=58.31 Aligned_cols=59 Identities=27% Similarity=0.255 Sum_probs=46.5
Q ss_pred HHHHHHHHCCCCCCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCC
Q 015771 18 VTESFARRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK 80 (400)
Q Consensus 18 vL~el~~rlp~~~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~ 80 (400)
+++.|...-+.-.+..||++|.|||..+..+.+ ...+|+++|.++.|....+++.++..
T Consensus 46 v~~~I~~ka~~k~tD~VLEvGPGTGnLT~~lLe----~~kkVvA~E~Dprmvael~krv~gtp 104 (315)
T KOG0820|consen 46 VIDQIVEKADLKPTDVVLEVGPGTGNLTVKLLE----AGKKVVAVEIDPRMVAELEKRVQGTP 104 (315)
T ss_pred HHHHHHhccCCCCCCEEEEeCCCCCHHHHHHHH----hcCeEEEEecCcHHHHHHHHHhcCCC
Confidence 445555544433457999999999999999884 56799999999999998888887654
|
|
| >KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.0027 Score=55.29 Aligned_cols=91 Identities=13% Similarity=0.102 Sum_probs=60.3
Q ss_pred HHHHHHHHHCCCCCCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCC-CCCceeechhhhHhh
Q 015771 17 LVTESFARRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK-DLPLIHSYNSIQALN 95 (400)
Q Consensus 17 ~vL~el~~rlp~~~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~-~~~~~~~~~~~~~l~ 95 (400)
..+.-|..-.+++.++.|+|+|||.|-+..+++ ++ ....+.++|+.++.++++...+.... ++..+.+. +.
T Consensus 35 sM~~~Ih~TygdiEgkkl~DLgcgcGmLs~a~s--m~-~~e~vlGfDIdpeALEIf~rNaeEfEvqidlLqcd-----il 106 (185)
T KOG3420|consen 35 SMLYTIHNTYGDIEGKKLKDLGCGCGMLSIAFS--MP-KNESVLGFDIDPEALEIFTRNAEEFEVQIDLLQCD-----IL 106 (185)
T ss_pred HHHHHHHhhhccccCcchhhhcCchhhhHHHhh--cC-CCceEEeeecCHHHHHHHhhchHHhhhhhheeeee-----cc
Confidence 345555556678889999999999999987655 22 45789999999999999988776532 11222221 11
Q ss_pred hhcccCCCcccEEeecccccC
Q 015771 96 KDISKSEREHDLVIASYVLGE 116 (400)
Q Consensus 96 ~~l~~~~~~~DLVias~~L~e 116 (400)
. +....+.||.++..--++.
T Consensus 107 d-le~~~g~fDtaviNppFGT 126 (185)
T KOG3420|consen 107 D-LELKGGIFDTAVINPPFGT 126 (185)
T ss_pred c-hhccCCeEeeEEecCCCCc
Confidence 1 1123467888777665543
|
|
| >COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.01 Score=57.72 Aligned_cols=114 Identities=18% Similarity=0.283 Sum_probs=73.8
Q ss_pred CCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCC---CCceeechhhhHhhhhcccCCCccc
Q 015771 30 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKD---LPLIHSYNSIQALNKDISKSEREHD 106 (400)
Q Consensus 30 ~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~---~~~~~~~~~~~~l~~~l~~~~~~~D 106 (400)
+|++||-+|.|.|..++.+...- ...++++||+++.+++.+++-+..... -|.+... ++|--+-+.....+||
T Consensus 76 ~pk~VLiiGgGdG~tlRevlkh~--~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~--i~Dg~~~v~~~~~~fD 151 (282)
T COG0421 76 NPKRVLIIGGGDGGTLREVLKHL--PVERITMVEIDPAVIELARKYLPEPSGGADDPRVEII--IDDGVEFLRDCEEKFD 151 (282)
T ss_pred CCCeEEEECCCccHHHHHHHhcC--CcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEE--eccHHHHHHhCCCcCC
Confidence 45799999999999999988654 368999999999999999999876431 1322211 1121112222234899
Q ss_pred EEeecccccCCCC----HHHHHHHHHHHHhccCCeEEEEcCCCCCch
Q 015771 107 LVIASYVLGEVPS----LQDRITIVRQLWDLTRDVLVLVEPGTPQGS 149 (400)
Q Consensus 107 LVias~~L~eL~~----~~~r~~~i~~Lw~~~gG~LVlVE~Gtp~Gf 149 (400)
+||+--+=..=+. ..+-.+.++++++ ++|++|.- .|+|-..
T Consensus 152 vIi~D~tdp~gp~~~Lft~eFy~~~~~~L~-~~Gi~v~q-~~~~~~~ 196 (282)
T COG0421 152 VIIVDSTDPVGPAEALFTEEFYEGCRRALK-EDGIFVAQ-AGSPFLQ 196 (282)
T ss_pred EEEEcCCCCCCcccccCCHHHHHHHHHhcC-CCcEEEEe-cCCcccc
Confidence 9998554331110 1244456666664 68988877 6666655
|
|
| >COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.0045 Score=59.32 Aligned_cols=73 Identities=18% Similarity=0.211 Sum_probs=52.6
Q ss_pred HhHHHHHHHHHHHHHHCCCCCCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCCCCcee
Q 015771 10 ECLLFTLLVTESFARRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIH 86 (400)
Q Consensus 10 ~~Ya~~~~vL~el~~rlp~~~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~~~~~~ 86 (400)
||+-.=..+++.+......-...+||+||+|.|+.+..+.+ ...+|+++|+++.|....+..+....++..++
T Consensus 10 QnFL~d~~v~~kIv~~a~~~~~d~VlEIGpG~GaLT~~Ll~----~~~~v~aiEiD~~l~~~L~~~~~~~~n~~vi~ 82 (259)
T COG0030 10 QNFLIDKNVIDKIVEAANISPGDNVLEIGPGLGALTEPLLE----RAARVTAIEIDRRLAEVLKERFAPYDNLTVIN 82 (259)
T ss_pred cccccCHHHHHHHHHhcCCCCCCeEEEECCCCCHHHHHHHh----hcCeEEEEEeCHHHHHHHHHhcccccceEEEe
Confidence 33333345566666554333357999999999999999885 45689999999999998888876444555444
|
|
| >PF13679 Methyltransf_32: Methyltransferase domain | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.02 Score=49.72 Aligned_cols=86 Identities=17% Similarity=0.180 Sum_probs=57.8
Q ss_pred CCCCeEEEEccchhHHHHHHHHHCCC--CCcEEEEEeCCHHHHHHHHHhhcCCCC-C-CceeechhhhHhhhhcccCCCc
Q 015771 29 FSPAKVLDFGAGTGSAFWALREVWPR--SLEKVNLVEPSQSMQRAGQSLMQGPKD-L-PLIHSYNSIQALNKDISKSERE 104 (400)
Q Consensus 29 ~~p~~VLDvG~G~Gt~~~Al~~~~~~--~~~~v~~vD~S~~ml~~a~~ll~~~~~-~-~~~~~~~~~~~l~~~l~~~~~~ 104 (400)
..+.+|+|+|||-|.++++++..|+. ...+|++||.++.+.+.+..+.+.... . .... .....+... .....
T Consensus 24 ~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~~~~--~~~~~ 99 (141)
T PF13679_consen 24 KRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQKLGSDLEKRLS--FIQGDIADE--SSSDP 99 (141)
T ss_pred CCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHHhcchhhccch--hhccchhhh--cccCC
Confidence 45679999999999999998875532 346899999999999988887765431 1 1010 000111110 12456
Q ss_pred ccEEeecccccCCC
Q 015771 105 HDLVIASYVLGEVP 118 (400)
Q Consensus 105 ~DLVias~~L~eL~ 118 (400)
.+++|.-|+=..|.
T Consensus 100 ~~~~vgLHaCG~Ls 113 (141)
T PF13679_consen 100 PDILVGLHACGDLS 113 (141)
T ss_pred CeEEEEeecccchH
Confidence 78999999988885
|
|
| >PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2 | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.0044 Score=59.16 Aligned_cols=108 Identities=19% Similarity=0.264 Sum_probs=61.7
Q ss_pred CCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCC---CCceeechhhhHhhhhcccCCC-cc
Q 015771 30 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKD---LPLIHSYNSIQALNKDISKSER-EH 105 (400)
Q Consensus 30 ~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~---~~~~~~~~~~~~l~~~l~~~~~-~~ 105 (400)
+|++||=+|.|.|..+..+.... ...++++||+++.+++.|++.+..... -+.++.. .++-..-+....+ +|
T Consensus 76 ~p~~VLiiGgG~G~~~~ell~~~--~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~--~~Dg~~~l~~~~~~~y 151 (246)
T PF01564_consen 76 NPKRVLIIGGGDGGTARELLKHP--PVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRII--IGDGRKFLKETQEEKY 151 (246)
T ss_dssp ST-EEEEEESTTSHHHHHHTTST--T-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEE--ESTHHHHHHTSSST-E
T ss_pred CcCceEEEcCCChhhhhhhhhcC--CcceEEEEecChHHHHHHHHhchhhccccCCCceEEE--EhhhHHHHHhccCCcc
Confidence 68999999999999988776432 357899999999999999987753211 1222111 1111111222234 89
Q ss_pred cEEeecccccCCCCH----HHHHHHHHHHHhccCCeEEEEc
Q 015771 106 DLVIASYVLGEVPSL----QDRITIVRQLWDLTRDVLVLVE 142 (400)
Q Consensus 106 DLVias~~L~eL~~~----~~r~~~i~~Lw~~~gG~LVlVE 142 (400)
|+|++--.-..-+.. .+-.+.+++.++ ++|++++=-
T Consensus 152 DvIi~D~~dp~~~~~~l~t~ef~~~~~~~L~-~~Gv~v~~~ 191 (246)
T PF01564_consen 152 DVIIVDLTDPDGPAPNLFTREFYQLCKRRLK-PDGVLVLQA 191 (246)
T ss_dssp EEEEEESSSTTSCGGGGSSHHHHHHHHHHEE-EEEEEEEEE
T ss_pred cEEEEeCCCCCCCcccccCHHHHHHHHhhcC-CCcEEEEEc
Confidence 999974332111111 133344555553 789988765
|
5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B .... |
| >PRK05031 tRNA (uracil-5-)-methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=96.73 E-value=0.0029 Score=63.81 Aligned_cols=66 Identities=20% Similarity=0.110 Sum_probs=47.4
Q ss_pred HHHhHHHHHHHHHHHHHHCCCCCCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcC
Q 015771 8 LLECLLFTLLVTESFARRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQG 78 (400)
Q Consensus 8 ~~~~Ya~~~~vL~el~~rlp~~~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~ 78 (400)
|=.|-.....+++.+...+.. .+.+|||++||+|+.+++++.. ..+|++||.|+.|++.+++.+..
T Consensus 185 ~Q~N~~~~e~l~~~v~~~~~~-~~~~vLDl~~G~G~~sl~la~~----~~~v~~vE~~~~ai~~a~~N~~~ 250 (362)
T PRK05031 185 TQPNAAVNEKMLEWALDATKG-SKGDLLELYCGNGNFTLALARN----FRRVLATEISKPSVAAAQYNIAA 250 (362)
T ss_pred eccCHHHHHHHHHHHHHHhhc-CCCeEEEEeccccHHHHHHHhh----CCEEEEEECCHHHHHHHHHHHHH
Confidence 334444444555555554422 2357999999999999988854 34899999999999999987753
|
|
| >KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown] | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.00066 Score=62.30 Aligned_cols=96 Identities=18% Similarity=0.298 Sum_probs=65.5
Q ss_pred CCCC--CCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCCCCceeechhhhHhhhhcccCCCc
Q 015771 27 PGFS--PAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDISKSERE 104 (400)
Q Consensus 27 p~~~--p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 104 (400)
|+|+ |.++||+|+|-|..+..++. ...+|++.|.|..|++..+.+ +..++.... .. ..+-+
T Consensus 107 p~w~~~~~~lLDlGAGdGeit~~m~p----~feevyATElS~tMr~rL~kk-----~ynVl~~~e---w~-----~t~~k 169 (288)
T KOG3987|consen 107 PAWGQEPVTLLDLGAGDGEITLRMAP----TFEEVYATELSWTMRDRLKKK-----NYNVLTEIE---WL-----QTDVK 169 (288)
T ss_pred CccCCCCeeEEeccCCCcchhhhhcc----hHHHHHHHHhhHHHHHHHhhc-----CCceeeehh---hh-----hcCce
Confidence 4554 58999999999998877664 345799999999999876653 111222111 11 12347
Q ss_pred ccEEeecccccCCCCHHHHHHHHHHHHhccCCeEE
Q 015771 105 HDLVIASYVLGEVPSLQDRITIVRQLWDLTRDVLV 139 (400)
Q Consensus 105 ~DLVias~~L~eL~~~~~r~~~i~~Lw~~~gG~LV 139 (400)
||||.|-++|.--.++...++-|+..++..+|..|
T Consensus 170 ~dli~clNlLDRc~~p~kLL~Di~~vl~psngrvi 204 (288)
T KOG3987|consen 170 LDLILCLNLLDRCFDPFKLLEDIHLVLAPSNGRVI 204 (288)
T ss_pred eehHHHHHHHHhhcChHHHHHHHHHHhccCCCcEE
Confidence 99999999998776666666666666665577544
|
|
| >PRK00536 speE spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=96.66 E-value=0.012 Score=56.60 Aligned_cols=102 Identities=15% Similarity=0.100 Sum_probs=65.3
Q ss_pred CCCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCC---CCCceeechhhhHhhhhcccCCCcc
Q 015771 29 FSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK---DLPLIHSYNSIQALNKDISKSEREH 105 (400)
Q Consensus 29 ~~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~---~~~~~~~~~~~~~l~~~l~~~~~~~ 105 (400)
-+|++||=+|.|-|.++..+... ..+|+.||+++++++.+++-+.... +-|.+.... .+. ....++|
T Consensus 71 ~~pk~VLIiGGGDGg~~REvLkh----~~~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~---~~~---~~~~~~f 140 (262)
T PRK00536 71 KELKEVLIVDGFDLELAHQLFKY----DTHVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAK---QLL---DLDIKKY 140 (262)
T ss_pred CCCCeEEEEcCCchHHHHHHHCc----CCeeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEee---hhh---hccCCcC
Confidence 46899999999999998776632 2499999999999999999665432 123332211 011 1123689
Q ss_pred cEEeecccccCCCCHHHHHHHHHHHHhccCCeEEEEcCCCCC
Q 015771 106 DLVIASYVLGEVPSLQDRITIVRQLWDLTRDVLVLVEPGTPQ 147 (400)
Q Consensus 106 DLVias~~L~eL~~~~~r~~~i~~Lw~~~gG~LVlVE~Gtp~ 147 (400)
|+||+--+ ++ .+-.+.+++.++ +||++|.= .|+|-
T Consensus 141 DVIIvDs~----~~-~~fy~~~~~~L~-~~Gi~v~Q-s~sp~ 175 (262)
T PRK00536 141 DLIICLQE----PD-IHKIDGLKRMLK-EDGVFISV-AKHPL 175 (262)
T ss_pred CEEEEcCC----CC-hHHHHHHHHhcC-CCcEEEEC-CCCcc
Confidence 99998743 22 233345666664 78888743 34443
|
|
| >PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.0074 Score=54.39 Aligned_cols=48 Identities=21% Similarity=0.151 Sum_probs=33.8
Q ss_pred HHHHHHHCCCCC---CCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHH
Q 015771 19 TESFARRLPGFS---PAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQS 67 (400)
Q Consensus 19 L~el~~rlp~~~---p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ 67 (400)
|.|+-++.+-+. +.+|||+||+||..+-.+.+... ....+++||..+.
T Consensus 9 L~ei~~~~~~~~~~~~~~vlDlG~aPGGws~~~~~~~~-~~~~v~avDl~~~ 59 (181)
T PF01728_consen 9 LYEIDEKFKIFKPGKGFTVLDLGAAPGGWSQVLLQRGG-PAGRVVAVDLGPM 59 (181)
T ss_dssp HHHHHHTTSSS-TTTTEEEEEET-TTSHHHHHHHTSTT-TEEEEEEEESSST
T ss_pred HHHHHHHCCCCCcccccEEEEcCCcccceeeeeeeccc-ccceEEEEecccc
Confidence 455555555333 47999999999999988875441 2479999998765
|
RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A .... |
| >KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.59 E-value=0.028 Score=50.88 Aligned_cols=79 Identities=15% Similarity=0.207 Sum_probs=53.9
Q ss_pred CCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCC-CCCceeechhhhHhhhhcccCCCcccEE
Q 015771 30 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK-DLPLIHSYNSIQALNKDISKSEREHDLV 108 (400)
Q Consensus 30 ~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~-~~~~~~~~~~~~~l~~~l~~~~~~~DLV 108 (400)
.|.-+||+|||+|..+-.++.... ...-+.++|+|+.+++..+.-++... .+..+. .++...+. .++.|++
T Consensus 43 ~~~i~lEIG~GSGvvstfL~~~i~-~~~~~latDiNp~A~~~Tl~TA~~n~~~~~~V~-----tdl~~~l~--~~~VDvL 114 (209)
T KOG3191|consen 43 NPEICLEIGCGSGVVSTFLASVIG-PQALYLATDINPEALEATLETARCNRVHIDVVR-----TDLLSGLR--NESVDVL 114 (209)
T ss_pred CceeEEEecCCcchHHHHHHHhcC-CCceEEEecCCHHHHHHHHHHHHhcCCccceee-----hhHHhhhc--cCCccEE
Confidence 367899999999998888777665 35678999999999988766654322 222222 23444443 3789999
Q ss_pred eec--ccccC
Q 015771 109 IAS--YVLGE 116 (400)
Q Consensus 109 ias--~~L~e 116 (400)
+.+ |+..+
T Consensus 115 vfNPPYVpt~ 124 (209)
T KOG3191|consen 115 VFNPPYVPTS 124 (209)
T ss_pred EECCCcCcCC
Confidence 875 55443
|
|
| >TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family | Back alignment and domain information |
|---|
Probab=96.53 E-value=0.013 Score=62.08 Aligned_cols=50 Identities=14% Similarity=0.185 Sum_probs=40.1
Q ss_pred CCCeEEEEccchhHHHHHHHHHCCC------CCcEEEEEeCCHHHHHHHHHhhcCC
Q 015771 30 SPAKVLDFGAGTGSAFWALREVWPR------SLEKVNLVEPSQSMQRAGQSLMQGP 79 (400)
Q Consensus 30 ~p~~VLDvG~G~Gt~~~Al~~~~~~------~~~~v~~vD~S~~ml~~a~~ll~~~ 79 (400)
.+.+|||.|||+|..+.++...++. ....++++|+++.++..++..+...
T Consensus 31 ~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~ 86 (524)
T TIGR02987 31 TKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEF 86 (524)
T ss_pred cceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhc
Confidence 3569999999999999888766531 1257899999999999998887544
|
Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted. |
| >PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed | Back alignment and domain information |
|---|
Probab=96.43 E-value=0.027 Score=58.70 Aligned_cols=116 Identities=13% Similarity=0.098 Sum_probs=70.4
Q ss_pred CCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCCCCceeechhhhHhhhhcc-cCCCcccEE
Q 015771 30 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDIS-KSEREHDLV 108 (400)
Q Consensus 30 ~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~~~~~~~~~~~~~l~~~l~-~~~~~~DLV 108 (400)
.+.+|||++||||.=+..+++.++. ...++++|+|+..++..+..++..+ +..+... ..+.. .+. .....||.|
T Consensus 113 pg~~VLD~CAAPGgKTt~la~~l~~-~g~lvA~D~~~~R~~~L~~nl~r~G-~~nv~v~--~~D~~-~~~~~~~~~fD~I 187 (470)
T PRK11933 113 APQRVLDMAAAPGSKTTQIAALMNN-QGAIVANEYSASRVKVLHANISRCG-VSNVALT--HFDGR-VFGAALPETFDAI 187 (470)
T ss_pred CCCEEEEeCCCccHHHHHHHHHcCC-CCEEEEEeCCHHHHHHHHHHHHHcC-CCeEEEE--eCchh-hhhhhchhhcCeE
Confidence 3479999999999988888887753 4589999999999998888887653 2211110 01111 111 123569999
Q ss_pred e----ecc--cccCCCC------HH-------HHHHHHHHHHhc--cCCeEEEEcCC-CCCchH
Q 015771 109 I----ASY--VLGEVPS------LQ-------DRITIVRQLWDL--TRDVLVLVEPG-TPQGSS 150 (400)
Q Consensus 109 i----as~--~L~eL~~------~~-------~r~~~i~~Lw~~--~gG~LVlVE~G-tp~Gf~ 150 (400)
+ ||- ++.--|+ .+ -..+++.+.|+. +||.||-.--. +|.--+
T Consensus 188 LvDaPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYSTCT~~~eENE 251 (470)
T PRK11933 188 LLDAPCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYSTCTLNREENQ 251 (470)
T ss_pred EEcCCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCHHHHH
Confidence 8 442 1221111 11 113466666654 89999887664 344333
|
|
| >PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 [] | Back alignment and domain information |
|---|
Probab=96.31 E-value=0.027 Score=52.30 Aligned_cols=60 Identities=15% Similarity=0.198 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHHHCCCCCCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhc
Q 015771 12 LLFTLLVTESFARRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQ 77 (400)
Q Consensus 12 Ya~~~~vL~el~~rlp~~~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~ 77 (400)
+..+..+|.++. + -.....+|+|||.|..+.+++-..+ ..+.++||..+...++|+.+.+
T Consensus 28 ~~~~~~il~~~~--l--~~~dvF~DlGSG~G~~v~~aal~~~--~~~~~GIEi~~~~~~~a~~~~~ 87 (205)
T PF08123_consen 28 PEFVSKILDELN--L--TPDDVFYDLGSGVGNVVFQAALQTG--CKKSVGIEILPELHDLAEELLE 87 (205)
T ss_dssp HHHHHHHHHHTT------TT-EEEEES-TTSHHHHHHHHHH----SEEEEEE-SHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC--C--CCCCEEEECCCCCCHHHHHHHHHcC--CcEEEEEEechHHHHHHHHHHH
Confidence 345556665543 1 1226899999999998887665543 5679999999998888876554
|
H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A .... |
| >PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2 | Back alignment and domain information |
|---|
Probab=96.21 E-value=0.033 Score=53.93 Aligned_cols=104 Identities=15% Similarity=0.228 Sum_probs=52.0
Q ss_pred CCCeEEEEccchhHHH-HHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCC----CCceeechhhhHhhhhcccCCCc
Q 015771 30 SPAKVLDFGAGTGSAF-WALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKD----LPLIHSYNSIQALNKDISKSERE 104 (400)
Q Consensus 30 ~p~~VLDvG~G~Gt~~-~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~----~~~~~~~~~~~~l~~~l~~~~~~ 104 (400)
.|.+|+=+||||--.+ +-++.... ....++++|.+++..+++++++....+ +.++.. +.. +....-..
T Consensus 120 ~p~rVaFIGSGPLPlT~i~la~~~~-~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~-----d~~-~~~~dl~~ 192 (276)
T PF03059_consen 120 PPSRVAFIGSGPLPLTSIVLAKQHG-PGARVHNIDIDPEANELARRLVASDLGLSKRMSFITA-----DVL-DVTYDLKE 192 (276)
T ss_dssp ---EEEEE---SS-HHHHHHH--HT-T--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES------GG-GG-GG---
T ss_pred ccceEEEEcCCCcchHHHHHHHHhC-CCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEec-----chh-cccccccc
Confidence 5779999999976432 22332221 235789999999999999999873211 122221 111 11112357
Q ss_pred ccEEeecccccCCCCHHHHHHHHHHHHhc-cCCeEEEEc
Q 015771 105 HDLVIASYVLGEVPSLQDRITIVRQLWDL-TRDVLVLVE 142 (400)
Q Consensus 105 ~DLVias~~L~eL~~~~~r~~~i~~Lw~~-~gG~LVlVE 142 (400)
||+|+.+-...- +.++..+++.+|++. +.|.+|++-
T Consensus 193 ~DvV~lAalVg~--~~e~K~~Il~~l~~~m~~ga~l~~R 229 (276)
T PF03059_consen 193 YDVVFLAALVGM--DAEPKEEILEHLAKHMAPGARLVVR 229 (276)
T ss_dssp -SEEEE-TT-S------SHHHHHHHHHHHS-TTSEEEEE
T ss_pred CCEEEEhhhccc--ccchHHHHHHHHHhhCCCCcEEEEe
Confidence 999987765543 244567899999886 567777775
|
5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B. |
| >PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH | Back alignment and domain information |
|---|
Probab=96.20 E-value=0.013 Score=53.47 Aligned_cols=119 Identities=18% Similarity=0.198 Sum_probs=65.6
Q ss_pred HHHHHHHHCCCCCCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCCCC---ceeechhhhHh
Q 015771 18 VTESFARRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLP---LIHSYNSIQAL 94 (400)
Q Consensus 18 vL~el~~rlp~~~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~~~---~~~~~~~~~~l 94 (400)
+|+-|... .+...++||+=||+|+..+.+.. ....+|++||.|....+..++.++...... .+... ....+
T Consensus 32 lFniL~~~--~~~g~~vLDLFaGSGalGlEALS---RGA~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d-~~~~l 105 (183)
T PF03602_consen 32 LFNILQPR--NLEGARVLDLFAGSGALGLEALS---RGAKSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGD-AFKFL 105 (183)
T ss_dssp HHHHHHCH---HTT-EEEETT-TTSHHHHHHHH---TT-SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESS-HHHHH
T ss_pred HHHHhccc--ccCCCeEEEcCCccCccHHHHHh---cCCCeEEEEECCHHHHHHHHHHHHHhCCCcceeeeccC-HHHHH
Confidence 45555544 13458999999999998875442 356799999999999999988887543211 11111 11112
Q ss_pred hhhcccCCCcccEEeecccccCCCCHHHHHHHHHHHHhc---cCCeEEEEcCCCC
Q 015771 95 NKDISKSEREHDLVIASYVLGEVPSLQDRITIVRQLWDL---TRDVLVLVEPGTP 146 (400)
Q Consensus 95 ~~~l~~~~~~~DLVias~~L~eL~~~~~r~~~i~~Lw~~---~gG~LVlVE~Gtp 146 (400)
.. ......+||+|.+-==...- . ....++..|.+. ..+-+|++|....
T Consensus 106 ~~-~~~~~~~fDiIflDPPY~~~--~-~~~~~l~~l~~~~~l~~~~~ii~E~~~~ 156 (183)
T PF03602_consen 106 LK-LAKKGEKFDIIFLDPPYAKG--L-YYEELLELLAENNLLNEDGLIIIEHSKK 156 (183)
T ss_dssp HH-HHHCTS-EEEEEE--STTSC--H-HHHHHHHHHHHTTSEEEEEEEEEEEETT
T ss_pred Hh-hcccCCCceEEEECCCcccc--h-HHHHHHHHHHHCCCCCCCEEEEEEecCC
Confidence 21 11235789999884221111 1 023455555542 3567888888554
|
They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A. |
| >KOG3201 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.20 E-value=0.0055 Score=54.34 Aligned_cols=128 Identities=13% Similarity=0.128 Sum_probs=70.7
Q ss_pred HHHhHHHHHHHHHHHHHHCCCCCCCeEEEEccc-hhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCC--CCCCc
Q 015771 8 LLECLLFTLLVTESFARRLPGFSPAKVLDFGAG-TGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGP--KDLPL 84 (400)
Q Consensus 8 ~~~~Ya~~~~vL~el~~rlp~~~p~~VLDvG~G-~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~--~~~~~ 84 (400)
||+.=+-.+-+|.+..+ +...+||++|.| +|.+.+.++-.-+ ...|...|.+...++-.+++.... .....
T Consensus 11 wpseeala~~~l~~~n~----~rg~~ilelgggft~laglmia~~a~--~~~v~ltdgne~svrnv~ki~~~n~~s~~ts 84 (201)
T KOG3201|consen 11 WPSEEALAWTILRDPNK----IRGRRILELGGGFTGLAGLMIACKAP--DSSVWLTDGNEESVRNVEKIRNSNMASSLTS 84 (201)
T ss_pred cccHHHHHHHHHhchhH----HhHHHHHHhcCchhhhhhhheeeecC--CceEEEecCCHHHHHHHHHHHhcccccccce
Confidence 44443444455555443 445789999999 5555444443333 468999999999888777765432 11111
Q ss_pred eeechhhhHhhhhcccCCCcccEEeecccccCCCCHHHHHHHHHHHHhccCCeEEEEcC
Q 015771 85 IHSYNSIQALNKDISKSEREHDLVIASYVLGEVPSLQDRITIVRQLWDLTRDVLVLVEP 143 (400)
Q Consensus 85 ~~~~~~~~~l~~~l~~~~~~~DLVias~~L~eL~~~~~r~~~i~~Lw~~~gG~LVlVE~ 143 (400)
... ..+............+||+|+++-.+..-...++....|+.+++ |.|.-++.-|
T Consensus 85 c~v-lrw~~~~aqsq~eq~tFDiIlaADClFfdE~h~sLvdtIk~lL~-p~g~Al~fsP 141 (201)
T KOG3201|consen 85 CCV-LRWLIWGAQSQQEQHTFDIILAADCLFFDEHHESLVDTIKSLLR-PSGRALLFSP 141 (201)
T ss_pred ehh-hHHHHhhhHHHHhhCcccEEEeccchhHHHHHHHHHHHHHHHhC-cccceeEecC
Confidence 111 11111111111234589999999987653222333445555553 6776666655
|
|
| >PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G | Back alignment and domain information |
|---|
Probab=96.06 E-value=0.013 Score=53.39 Aligned_cols=110 Identities=22% Similarity=0.306 Sum_probs=63.1
Q ss_pred eEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCC--CCCCceeechhhhHhhhhcccCCCcccEEee
Q 015771 33 KVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGP--KDLPLIHSYNSIQALNKDISKSEREHDLVIA 110 (400)
Q Consensus 33 ~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~--~~~~~~~~~~~~~~l~~~l~~~~~~~DLVia 110 (400)
+++|+|+|.|--.+.++-.+|+ .+++.+|++..-....+...... .|+..++.. +.. ......||+|++
T Consensus 51 ~~lDiGSGaGfPGipLaI~~p~--~~~~LvEs~~KK~~FL~~~~~~L~L~nv~v~~~R-----~E~--~~~~~~fd~v~a 121 (184)
T PF02527_consen 51 KVLDIGSGAGFPGIPLAIARPD--LQVTLVESVGKKVAFLKEVVRELGLSNVEVINGR-----AEE--PEYRESFDVVTA 121 (184)
T ss_dssp EEEEETSTTTTTHHHHHHH-TT--SEEEEEESSHHHHHHHHHHHHHHT-SSEEEEES------HHH--TTTTT-EEEEEE
T ss_pred eEEecCCCCCChhHHHHHhCCC--CcEEEEeCCchHHHHHHHHHHHhCCCCEEEEEee-----ecc--cccCCCccEEEe
Confidence 7999999999766666656663 57999999987555444444332 233333321 222 224578999988
Q ss_pred cccccCCCCHHHHHHHHHHHHhccCCeEEEEcCCCCCchHHHHHHHHH
Q 015771 111 SYVLGEVPSLQDRITIVRQLWDLTRDVLVLVEPGTPQGSSIISQMRSH 158 (400)
Q Consensus 111 s~~L~eL~~~~~r~~~i~~Lw~~~gG~LVlVE~Gtp~Gf~~I~~aR~~ 158 (400)
--+ .. ......+...+++ ++|.+++. .| +...+-+.+++..
T Consensus 122 RAv-~~---l~~l~~~~~~~l~-~~G~~l~~-KG-~~~~~El~~~~~~ 162 (184)
T PF02527_consen 122 RAV-AP---LDKLLELARPLLK-PGGRLLAY-KG-PDAEEELEEAKKA 162 (184)
T ss_dssp ESS-SS---HHHHHHHHGGGEE-EEEEEEEE-ES-S--HHHHHTHHHH
T ss_pred ehh-cC---HHHHHHHHHHhcC-CCCEEEEE-cC-CChHHHHHHHHhH
Confidence 654 22 3344455555554 68888876 33 2333445455444
|
Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A. |
| >PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=95.94 E-value=0.019 Score=58.38 Aligned_cols=97 Identities=15% Similarity=0.048 Sum_probs=59.0
Q ss_pred CeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCCCCceeechhhhHhhhhcccCCCcccEEeec
Q 015771 32 AKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDISKSEREHDLVIAS 111 (400)
Q Consensus 32 ~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~~~~~~~~~~~~~l~~~l~~~~~~~DLVias 111 (400)
.+|||++||+|...+.++...+ ..+|+++|.++.+++.++..++.. ++.... ....+....+.. ...||+|++-
T Consensus 59 ~~vLDl~aGsG~~~l~~a~~~~--~~~V~a~Din~~Av~~a~~N~~~N-~~~~~~--v~~~Da~~~l~~-~~~fD~V~lD 132 (382)
T PRK04338 59 ESVLDALSASGIRGIRYALETG--VEKVTLNDINPDAVELIKKNLELN-GLENEK--VFNKDANALLHE-ERKFDVVDID 132 (382)
T ss_pred CEEEECCCcccHHHHHHHHHCC--CCEEEEEeCCHHHHHHHHHHHHHh-CCCceE--EEhhhHHHHHhh-cCCCCEEEEC
Confidence 5899999999999888765543 358999999999999999887532 222111 111222222211 3569999884
Q ss_pred ccccCCCCHHHHHHHHHH-HHh-ccCCeEEEE
Q 015771 112 YVLGEVPSLQDRITIVRQ-LWD-LTRDVLVLV 141 (400)
Q Consensus 112 ~~L~eL~~~~~r~~~i~~-Lw~-~~gG~LVlV 141 (400)
- . -. .. .++.. +.. +++|.|.+-
T Consensus 133 P-~-Gs--~~---~~l~~al~~~~~~gilyvS 157 (382)
T PRK04338 133 P-F-GS--PA---PFLDSAIRSVKRGGLLCVT 157 (382)
T ss_pred C-C-CC--cH---HHHHHHHHHhcCCCEEEEE
Confidence 2 1 11 11 34444 222 267777766
|
|
| >COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=95.91 E-value=0.09 Score=42.94 Aligned_cols=107 Identities=21% Similarity=0.169 Sum_probs=57.0
Q ss_pred EEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCCCCceeechhhhHhhh-hcccCC-CcccEEeec
Q 015771 34 VLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNK-DISKSE-REHDLVIAS 111 (400)
Q Consensus 34 VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~~~~~~~~~~~~~l~~-~l~~~~-~~~DLVias 111 (400)
+||+|||+|... .+....+ ....++++|.++.|+..++..... .....+... ..+... .++... ..||++ +.
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~~~-~~~~~~~~~--~~~~~~~~~~~~~~~~~d~~-~~ 125 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGG-RGAYVVGVDLSPEMLALARARAEG-AGLGLVDFV--VADALGGVLPFEDSASFDLV-IS 125 (257)
T ss_pred eEEecCCcCHHH-HHHHhCC-CCceEEEEeCCHHHHHHHHhhhhh-cCCCceEEE--EeccccCCCCCCCCCceeEE-ee
Confidence 999999999875 2222222 114788899999999885554422 211101100 011111 123233 479999 55
Q ss_pred ccccCCCCHHHHHHHHHHHHhccCCeEEEEcCCCCC
Q 015771 112 YVLGEVPSLQDRITIVRQLWDLTRDVLVLVEPGTPQ 147 (400)
Q Consensus 112 ~~L~eL~~~~~r~~~i~~Lw~~~gG~LVlVE~Gtp~ 147 (400)
...............+....+ ++|.+++.......
T Consensus 126 ~~~~~~~~~~~~~~~~~~~l~-~~g~~~~~~~~~~~ 160 (257)
T COG0500 126 LLVLHLLPPAKALRELLRVLK-PGGRLVLSDLLRDG 160 (257)
T ss_pred eeehhcCCHHHHHHHHHHhcC-CCcEEEEEeccCCC
Confidence 544433322222333333332 68988888775444
|
|
| >TIGR01444 fkbM_fam methyltransferase, FkbM family | Back alignment and domain information |
|---|
Probab=95.89 E-value=0.016 Score=49.69 Aligned_cols=44 Identities=18% Similarity=0.139 Sum_probs=36.6
Q ss_pred eEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcC
Q 015771 33 KVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQG 78 (400)
Q Consensus 33 ~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~ 78 (400)
+|||+|||.|..+..++...+. .+++++|+++.+.+.++..++.
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~~--~~v~~~E~~~~~~~~l~~~~~~ 44 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGAE--GRVIAFEPLPDAYEILEENVKL 44 (143)
T ss_pred CEEEccCCccHHHHHHHHhCCC--CEEEEEecCHHHHHHHHHHHHH
Confidence 4899999999988877766642 4899999999999988887653
|
Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548. |
| >PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT) | Back alignment and domain information |
|---|
Probab=95.84 E-value=0.14 Score=49.47 Aligned_cols=124 Identities=19% Similarity=0.289 Sum_probs=80.7
Q ss_pred HHHHHHHHHHHCCC----CCCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCC--C----CCc
Q 015771 15 TLLVTESFARRLPG----FSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK--D----LPL 84 (400)
Q Consensus 15 ~~~vL~el~~rlp~----~~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~--~----~~~ 84 (400)
...++++|.+..|. -.+.+||==|||.|.++|.++. ....+.+.|.|-.|+=...-++.... + .|+
T Consensus 37 ~~~I~~~L~~~~p~~~~~~~~~~VLVPGsGLGRLa~Eia~----~G~~~~gnE~S~~Mll~s~fiLn~~~~~~~~~I~Pf 112 (270)
T PF07942_consen 37 YSPILDELESLFPPAGSDRSKIRVLVPGSGLGRLAWEIAK----LGYAVQGNEFSYFMLLASNFILNHCSQPNQFTIYPF 112 (270)
T ss_pred HHHHHHHHHHhhcccccCCCccEEEEcCCCcchHHHHHhh----ccceEEEEEchHHHHHHHHHHHcccCCCCcEEEecc
Confidence 34467777777662 3457999999999999999884 35689999999999988888776311 1 144
Q ss_pred eeechhh---h---------H------------h---hhh---cccC---CCcccEEeecccccCCCCHHHHHHHHHHHH
Q 015771 85 IHSYNSI---Q---------A------------L---NKD---ISKS---EREHDLVIASYVLGEVPSLQDRITIVRQLW 131 (400)
Q Consensus 85 ~~~~~~~---~---------~------------l---~~~---l~~~---~~~~DLVias~~L~eL~~~~~r~~~i~~Lw 131 (400)
++...+. . | + ..+ +... .++||.|+..|.+...++.-+=++.|.+++
T Consensus 113 ~~~~sn~~~~~dqlr~v~iPDv~p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~FFIDTA~Ni~~Yi~tI~~lL 192 (270)
T PF07942_consen 113 VHSFSNQKSREDQLRPVRIPDVDPSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTCFFIDTAENIIEYIETIEHLL 192 (270)
T ss_pred eecccCCCCHHHhCCceEeCCcCcccccCCCCceeEecCccEEecCCcccCCcccEEEEEEEeechHHHHHHHHHHHHHh
Confidence 3321110 0 0 0 000 0111 368999999988776655555566777777
Q ss_pred hccCCeEEEEcC
Q 015771 132 DLTRDVLVLVEP 143 (400)
Q Consensus 132 ~~~gG~LVlVE~ 143 (400)
+ |||+.|=+-|
T Consensus 193 k-pgG~WIN~GP 203 (270)
T PF07942_consen 193 K-PGGYWINFGP 203 (270)
T ss_pred c-cCCEEEecCC
Confidence 4 7997775544
|
This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions []. |
| >PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2 | Back alignment and domain information |
|---|
Probab=95.80 E-value=0.013 Score=57.42 Aligned_cols=130 Identities=16% Similarity=0.128 Sum_probs=67.4
Q ss_pred CCCCeEEEEccchhHHHHHHHHHCC-----CCCcEEEEEeCCHHHHHHHHHhh--cCCCCC-CceeechhhhHhhhhccc
Q 015771 29 FSPAKVLDFGAGTGSAFWALREVWP-----RSLEKVNLVEPSQSMQRAGQSLM--QGPKDL-PLIHSYNSIQALNKDISK 100 (400)
Q Consensus 29 ~~p~~VLDvG~G~Gt~~~Al~~~~~-----~~~~~v~~vD~S~~ml~~a~~ll--~~~~~~-~~~~~~~~~~~l~~~l~~ 100 (400)
....+|||-.||+|.++.++.+.+. .....++++|.++.+..+|+..+ ...... ..+.... .+......
T Consensus 45 ~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~~~~~~i~~~d---~l~~~~~~ 121 (311)
T PF02384_consen 45 KKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGIDNSNINIIQGD---SLENDKFI 121 (311)
T ss_dssp -TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHHCBGCEEEES----TTTSHSCT
T ss_pred cccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhccccccccccccc---cccccccc
Confidence 3446899999999999988776431 13468999999999999887543 221111 0011111 11111111
Q ss_pred CCCcccEEeecccccCC--C----------------CHHHHHHHHHHHHhc--cCCeEEEEcCCCCC-chHHHHHHHHHH
Q 015771 101 SEREHDLVIASYVLGEV--P----------------SLQDRITIVRQLWDL--TRDVLVLVEPGTPQ-GSSIISQMRSHI 159 (400)
Q Consensus 101 ~~~~~DLVias~~L~eL--~----------------~~~~r~~~i~~Lw~~--~gG~LVlVE~Gtp~-Gf~~I~~aR~~l 159 (400)
....||+|++.--+... . ....-..++...++. ++|.+++|-|..-. .-..-..+|+.|
T Consensus 122 ~~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~~~Ilp~~~L~~~~~~~~iR~~l 201 (311)
T PF02384_consen 122 KNQKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGRAAIILPNGFLFSSSSEKKIRKYL 201 (311)
T ss_dssp ST--EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEEEEEEEEHHHHHGSTHHHHHHHHH
T ss_pred cccccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhcccccceeEEecchhhhccchHHHHHHHH
Confidence 24689999885322211 0 001112355555554 68988877663211 111125679998
Q ss_pred HH
Q 015771 160 LW 161 (400)
Q Consensus 160 L~ 161 (400)
|+
T Consensus 202 l~ 203 (311)
T PF02384_consen 202 LE 203 (311)
T ss_dssp HH
T ss_pred Hh
Confidence 85
|
1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B. |
| >COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=95.78 E-value=0.038 Score=57.02 Aligned_cols=123 Identities=19% Similarity=0.150 Sum_probs=74.8
Q ss_pred HHHHhHHHHHHHHHHHHHHCCCCCCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCC--CCCc
Q 015771 7 LLLECLLFTLLVTESFARRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK--DLPL 84 (400)
Q Consensus 7 ~~~~~Ya~~~~vL~el~~rlp~~~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~--~~~~ 84 (400)
||=.|.+.....+..+.+-+..-...+|||+=||.|+.+++++ ....+|++||+++++++.|+..++..+ |..+
T Consensus 270 F~Q~N~~~~ekl~~~a~~~~~~~~~~~vlDlYCGvG~f~l~lA----~~~~~V~gvEi~~~aV~~A~~NA~~n~i~N~~f 345 (432)
T COG2265 270 FFQVNPAVAEKLYETALEWLELAGGERVLDLYCGVGTFGLPLA----KRVKKVHGVEISPEAVEAAQENAAANGIDNVEF 345 (432)
T ss_pred ceecCHHHHHHHHHHHHHHHhhcCCCEEEEeccCCChhhhhhc----ccCCEEEEEecCHHHHHHHHHHHHHcCCCcEEE
Confidence 4445655555555666555554455799999999999999988 356799999999999999999887542 2211
Q ss_pred eeechhhhHhhhhcccCCCcccEEeecccccCCCCHHHHHHHHHHHHhccCCeEEEE
Q 015771 85 IHSYNSIQALNKDISKSEREHDLVIASYVLGEVPSLQDRITIVRQLWDLTRDVLVLV 141 (400)
Q Consensus 85 ~~~~~~~~~l~~~l~~~~~~~DLVias~~L~eL~~~~~r~~~i~~Lw~~~gG~LVlV 141 (400)
... ....+.... .....+|.|+.-=-=.-+. ..+++.+.+..--.+|-|
T Consensus 346 ~~~--~ae~~~~~~-~~~~~~d~VvvDPPR~G~~-----~~~lk~l~~~~p~~IvYV 394 (432)
T COG2265 346 IAG--DAEEFTPAW-WEGYKPDVVVVDPPRAGAD-----REVLKQLAKLKPKRIVYV 394 (432)
T ss_pred EeC--CHHHHhhhc-cccCCCCEEEECCCCCCCC-----HHHHHHHHhcCCCcEEEE
Confidence 111 011111111 1234678888643222221 246777776533444444
|
|
| >PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2 | Back alignment and domain information |
|---|
Probab=95.74 E-value=0.023 Score=57.08 Aligned_cols=68 Identities=18% Similarity=0.019 Sum_probs=49.0
Q ss_pred HHHHHhHHHHHHHHHHHHHHCCCCCCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcC
Q 015771 6 MLLLECLLFTLLVTESFARRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQG 78 (400)
Q Consensus 6 ~~~~~~Ya~~~~vL~el~~rlp~~~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~ 78 (400)
+||=.|-......+..+.+.++.- +..|||+=||.|+.++.++. ...+|++||.++++++.|+..++.
T Consensus 173 sFfQvN~~~~~~l~~~~~~~l~~~-~~~vlDlycG~G~fsl~la~----~~~~V~gvE~~~~av~~A~~Na~~ 240 (352)
T PF05958_consen 173 SFFQVNPEQNEKLYEQALEWLDLS-KGDVLDLYCGVGTFSLPLAK----KAKKVIGVEIVEEAVEDARENAKL 240 (352)
T ss_dssp S---SBHHHHHHHHHHHHHHCTT--TTEEEEES-TTTCCHHHHHC----CSSEEEEEES-HHHHHHHHHHHHH
T ss_pred cCccCcHHHHHHHHHHHHHHhhcC-CCcEEEEeecCCHHHHHHHh----hCCeEEEeeCCHHHHHHHHHHHHH
Confidence 355556666666677776666543 34899999999999999983 557899999999999999988763
|
1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B. |
| >PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e | Back alignment and domain information |
|---|
Probab=95.62 E-value=0.046 Score=52.56 Aligned_cols=66 Identities=17% Similarity=0.211 Sum_probs=48.1
Q ss_pred HHHHHHHHHCCCCCCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCCCCcee
Q 015771 17 LVTESFARRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIH 86 (400)
Q Consensus 17 ~vL~el~~rlp~~~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~~~~~~ 86 (400)
.+.+.+.+.+..-....|||+|+|+|..+.++.+.. .++++||.++.+.+..+..+....++.+++
T Consensus 17 ~~~~~Iv~~~~~~~~~~VlEiGpG~G~lT~~L~~~~----~~v~~vE~d~~~~~~L~~~~~~~~~~~vi~ 82 (262)
T PF00398_consen 17 NIADKIVDALDLSEGDTVLEIGPGPGALTRELLKRG----KRVIAVEIDPDLAKHLKERFASNPNVEVIN 82 (262)
T ss_dssp HHHHHHHHHHTCGTTSEEEEESSTTSCCHHHHHHHS----SEEEEEESSHHHHHHHHHHCTTCSSEEEEE
T ss_pred HHHHHHHHhcCCCCCCEEEEeCCCCccchhhHhccc----CcceeecCcHhHHHHHHHHhhhcccceeee
Confidence 344444444432245799999999999999988654 689999999999999888776444444443
|
g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A .... |
| >PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ] | Back alignment and domain information |
|---|
Probab=95.60 E-value=0.025 Score=50.54 Aligned_cols=43 Identities=14% Similarity=0.151 Sum_probs=36.0
Q ss_pred eEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCC
Q 015771 33 KVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGP 79 (400)
Q Consensus 33 ~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~ 79 (400)
.|+|+.||.|..+++++..+ ..|++||.++..++.++..++-.
T Consensus 2 ~vlD~fcG~GGNtIqFA~~~----~~Viaidid~~~~~~a~hNa~vY 44 (163)
T PF09445_consen 2 TVLDAFCGVGGNTIQFARTF----DRVIAIDIDPERLECAKHNAEVY 44 (163)
T ss_dssp EEEETT-TTSHHHHHHHHTT-----EEEEEES-HHHHHHHHHHHHHT
T ss_pred EEEEeccCcCHHHHHHHHhC----CeEEEEECCHHHHHHHHHHHHHc
Confidence 69999999999999999765 47999999999999999988654
|
Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A. |
| >PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase | Back alignment and domain information |
|---|
Probab=95.54 E-value=0.19 Score=45.52 Aligned_cols=82 Identities=12% Similarity=0.063 Sum_probs=50.3
Q ss_pred CeEEEEccchhHHHHHHHHHCCCCC-------cEEEEEeCCHHHHHHHHHhhcCCCCCCceeechhhhHhhhhcccCCCc
Q 015771 32 AKVLDFGAGTGSAFWALREVWPRSL-------EKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDISKSERE 104 (400)
Q Consensus 32 ~~VLDvG~G~Gt~~~Al~~~~~~~~-------~~v~~vD~S~~ml~~a~~ll~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 104 (400)
..|||-=||+||.++.++..+.... .++++.|.++.+++.|+..++.......+... ..+.. .++...+.
T Consensus 30 ~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~~~i~~~--~~D~~-~l~~~~~~ 106 (179)
T PF01170_consen 30 DVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVEDYIDFI--QWDAR-ELPLPDGS 106 (179)
T ss_dssp S-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-CGGEEEE--E--GG-GGGGTTSB
T ss_pred CEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccCCceEEE--ecchh-hcccccCC
Confidence 5899999999999988766654322 14899999999999999998754322122110 01111 23334568
Q ss_pred ccEEeecccccC
Q 015771 105 HDLVIASYVLGE 116 (400)
Q Consensus 105 ~DLVias~~L~e 116 (400)
+|+||+.-=...
T Consensus 107 ~d~IvtnPPyG~ 118 (179)
T PF01170_consen 107 VDAIVTNPPYGR 118 (179)
T ss_dssp SCEEEEE--STT
T ss_pred CCEEEECcchhh
Confidence 999998755444
|
It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A. |
| >COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=95.48 E-value=0.11 Score=48.56 Aligned_cols=95 Identities=19% Similarity=0.281 Sum_probs=55.2
Q ss_pred CCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCC--CCCCceeechhhhHhhhhcccCCCc-ccE
Q 015771 31 PAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGP--KDLPLIHSYNSIQALNKDISKSERE-HDL 107 (400)
Q Consensus 31 p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~--~~~~~~~~~~~~~~l~~~l~~~~~~-~DL 107 (400)
+.+++|+|+|.|--.+.++-.+|+ .+++.+|+...=...-+.+.... .|+..++.. .++ +. ...+ ||+
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~~p~--~~vtLles~~Kk~~FL~~~~~eL~L~nv~i~~~R--aE~----~~-~~~~~~D~ 138 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIAFPD--LKVTLLESLGKKIAFLREVKKELGLENVEIVHGR--AEE----FG-QEKKQYDV 138 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHhccC--CcEEEEccCchHHHHHHHHHHHhCCCCeEEehhh--Hhh----cc-cccccCcE
Confidence 689999999999766665556664 34999999876555444444433 233333211 111 21 1123 999
Q ss_pred EeecccccCCCCHHHHHHHHHHHHhccCCeEE
Q 015771 108 VIASYVLGEVPSLQDRITIVRQLWDLTRDVLV 139 (400)
Q Consensus 108 Vias~~L~eL~~~~~r~~~i~~Lw~~~gG~LV 139 (400)
|++--+ ..| ....++...+.+ .||.++
T Consensus 139 vtsRAv-a~L---~~l~e~~~pllk-~~g~~~ 165 (215)
T COG0357 139 VTSRAV-ASL---NVLLELCLPLLK-VGGGFL 165 (215)
T ss_pred EEeehc-cch---HHHHHHHHHhcc-cCCcch
Confidence 887543 333 234455666664 466654
|
|
| >PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species | Back alignment and domain information |
|---|
Probab=95.47 E-value=0.073 Score=51.94 Aligned_cols=115 Identities=17% Similarity=0.165 Sum_probs=63.9
Q ss_pred CCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCC-CC---CceeechhhhHhhhhcccCCCcc
Q 015771 30 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK-DL---PLIHSYNSIQALNKDISKSEREH 105 (400)
Q Consensus 30 ~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~-~~---~~~~~~~~~~~l~~~l~~~~~~~ 105 (400)
+.++|||+=|=||..+.+++. ....+|+.||.|..+++.|+..+.-.. +. .++... -...+.. +. ..++|
T Consensus 123 ~gkrvLnlFsYTGgfsv~Aa~---gGA~~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~D-vf~~l~~-~~-~~~~f 196 (286)
T PF10672_consen 123 KGKRVLNLFSYTGGFSVAAAA---GGAKEVVSVDSSKRALEWAKENAALNGLDLDRHRFIQGD-VFKFLKR-LK-KGGRF 196 (286)
T ss_dssp TTCEEEEET-TTTHHHHHHHH---TTESEEEEEES-HHHHHHHHHHHHHTT-CCTCEEEEES--HHHHHHH-HH-HTT-E
T ss_pred CCCceEEecCCCCHHHHHHHH---CCCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecC-HHHHHHH-Hh-cCCCC
Confidence 347999999999988876552 245689999999999999999875321 11 122111 1111221 21 24589
Q ss_pred cEEee---cccccCCCCHHHHHHHHHHHHhc--cCCeEEEEcCCCCCchH
Q 015771 106 DLVIA---SYVLGEVPSLQDRITIVRQLWDL--TRDVLVLVEPGTPQGSS 150 (400)
Q Consensus 106 DLVia---s~~L~eL~~~~~r~~~i~~Lw~~--~gG~LVlVE~Gtp~Gf~ 150 (400)
|+||+ ++.=+...-..+-..++..+.+. +||.|++.-....-+.+
T Consensus 197 D~IIlDPPsF~k~~~~~~~~y~~L~~~a~~ll~~gG~l~~~scs~~i~~~ 246 (286)
T PF10672_consen 197 DLIILDPPSFAKSKFDLERDYKKLLRRAMKLLKPGGLLLTCSCSHHISPD 246 (286)
T ss_dssp EEEEE--SSEESSTCEHHHHHHHHHHHHHHTEEEEEEEEEEE--TTS-HH
T ss_pred CEEEECCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEcCCcccCHH
Confidence 99998 33322111011223455555554 79999888776555544
|
The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A. |
| >PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases | Back alignment and domain information |
|---|
Probab=95.46 E-value=0.057 Score=50.10 Aligned_cols=86 Identities=15% Similarity=0.224 Sum_probs=45.7
Q ss_pred CeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCCCCceeechhhhHhhhhcccCCCcccEEeec
Q 015771 32 AKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDISKSEREHDLVIAS 111 (400)
Q Consensus 32 ~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~~~~~~~~~~~~~l~~~l~~~~~~~DLVias 111 (400)
..|-|+|||-+..+-++. ...+|...|.-.. + +.+.. .++. .+|.+.+..|++|++
T Consensus 74 ~viaD~GCGdA~la~~~~-----~~~~V~SfDLva~-------------n-~~Vta----cdia-~vPL~~~svDv~Vfc 129 (219)
T PF05148_consen 74 LVIADFGCGDAKLAKAVP-----NKHKVHSFDLVAP-------------N-PRVTA----CDIA-NVPLEDESVDVAVFC 129 (219)
T ss_dssp S-EEEES-TT-HHHHH-------S---EEEEESS-S-------------S-TTEEE----S-TT-S-S--TT-EEEEEEE
T ss_pred EEEEECCCchHHHHHhcc-----cCceEEEeeccCC-------------C-CCEEE----ecCc-cCcCCCCceeEEEEE
Confidence 589999999988774443 2346888885321 1 11221 1232 345567889999999
Q ss_pred ccccCCCCHHHHHHHHHHHHh--ccCCeEEEEcCCC
Q 015771 112 YVLGEVPSLQDRITIVRQLWD--LTRDVLVLVEPGT 145 (400)
Q Consensus 112 ~~L~eL~~~~~r~~~i~~Lw~--~~gG~LVlVE~Gt 145 (400)
.+|+-.. . ..+|.+.++ ++||.|.|.|-.+
T Consensus 130 LSLMGTn-~---~~fi~EA~RvLK~~G~L~IAEV~S 161 (219)
T PF05148_consen 130 LSLMGTN-W---PDFIREANRVLKPGGILKIAEVKS 161 (219)
T ss_dssp S---SS--H---HHHHHHHHHHEEEEEEEEEEEEGG
T ss_pred hhhhCCC-c---HHHHHHHHheeccCcEEEEEEecc
Confidence 9998763 3 345555555 3899999999854
|
; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B. |
| >KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=95.36 E-value=0.18 Score=47.26 Aligned_cols=82 Identities=16% Similarity=0.248 Sum_probs=55.8
Q ss_pred CCCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCC---CCceeechhhhHhhhhcc-cCCCc
Q 015771 29 FSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKD---LPLIHSYNSIQALNKDIS-KSERE 104 (400)
Q Consensus 29 ~~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~---~~~~~~~~~~~~l~~~l~-~~~~~ 104 (400)
++|+++||+|.=||..+++.+...|+ ..+|+++|.+....+++..+.+...- +.+++. .....+.+-+. ...++
T Consensus 72 ~~ak~~lelGvfTGySaL~~Alalp~-dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g-~a~esLd~l~~~~~~~t 149 (237)
T KOG1663|consen 72 LNAKRTLELGVFTGYSALAVALALPE-DGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEG-PALESLDELLADGESGT 149 (237)
T ss_pred hCCceEEEEecccCHHHHHHHHhcCC-CceEEEEecChHHHHHhHHHHHhccccceeeeeec-chhhhHHHHHhcCCCCc
Confidence 57899999998888888877777875 67999999999999999887764321 222222 11222332222 24678
Q ss_pred ccEEeecc
Q 015771 105 HDLVIASY 112 (400)
Q Consensus 105 ~DLVias~ 112 (400)
||.++.-.
T Consensus 150 fDfaFvDa 157 (237)
T KOG1663|consen 150 FDFAFVDA 157 (237)
T ss_pred eeEEEEcc
Confidence 99998643
|
|
| >PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=95.30 E-value=0.32 Score=46.83 Aligned_cols=123 Identities=17% Similarity=0.220 Sum_probs=63.3
Q ss_pred CeEEEEccchhH--HHHHHH-HHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCC--CCceeechhhhHhhhhcc--c----
Q 015771 32 AKVLDFGAGTGS--AFWALR-EVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKD--LPLIHSYNSIQALNKDIS--K---- 100 (400)
Q Consensus 32 ~~VLDvG~G~Gt--~~~Al~-~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~--~~~~~~~~~~~~l~~~l~--~---- 100 (400)
...||+|||-=| .+-.++ ..-| ..+|+.||..+-.+..++.++....+ ..+++.. +.+...-+. .
T Consensus 70 rQFLDlGsGlPT~~nvHevAq~~~P--~aRVVYVD~DPvv~ah~ralL~~~~~g~t~~v~aD--~r~p~~iL~~p~~~~~ 145 (267)
T PF04672_consen 70 RQFLDLGSGLPTAGNVHEVAQRVAP--DARVVYVDNDPVVLAHARALLADNPRGRTAYVQAD--LRDPEAILAHPEVRGL 145 (267)
T ss_dssp -EEEEET--S--SS-HHHHHHHH-T--T-EEEEEESSHHHHHCCHHHHTT-TTSEEEEEE----TT-HHHHHCSHHHHCC
T ss_pred ceEEEcccCCCCCCCHhHHHHhhCC--CceEEEECCCchHHHHHHhhhcCCCCccEEEEeCC--CCCHHHHhcCHHHHhc
Confidence 689999999432 233333 2333 47999999999999999999987544 2333322 111110010 0
Q ss_pred -CCCcccEEeecccccCCCCHHHHHHHHHHHHhc-cCCeEEEEcCCCCCch-HHHHHHHHH
Q 015771 101 -SEREHDLVIASYVLGEVPSLQDRITIVRQLWDL-TRDVLVLVEPGTPQGS-SIISQMRSH 158 (400)
Q Consensus 101 -~~~~~DLVias~~L~eL~~~~~r~~~i~~Lw~~-~gG~LVlVE~Gtp~Gf-~~I~~aR~~ 158 (400)
...+.=.|++.-+|+++++.++-..++..+... +-|..+.|-+.|..+. +....++++
T Consensus 146 lD~~rPVavll~~vLh~v~D~~dp~~iv~~l~d~lapGS~L~ish~t~d~~p~~~~~~~~~ 206 (267)
T PF04672_consen 146 LDFDRPVAVLLVAVLHFVPDDDDPAGIVARLRDALAPGSYLAISHATDDGAPERAEALEAV 206 (267)
T ss_dssp --TTS--EEEECT-GGGS-CGCTHHHHHHHHHCCS-TT-EEEEEEEB-TTSHHHHHHHHHH
T ss_pred CCCCCCeeeeeeeeeccCCCccCHHHHHHHHHHhCCCCceEEEEecCCCCCHHHHHHHHHH
Confidence 111223567788899998877777889998876 4444444445454433 233444444
|
; PDB: 3GIW_A 3GO4_A 2QE6_A. |
| >KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.20 E-value=0.13 Score=49.06 Aligned_cols=111 Identities=20% Similarity=0.206 Sum_probs=64.4
Q ss_pred HHCCCCC--CCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCC---CCC---CceeechhhhH-h
Q 015771 24 RRLPGFS--PAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGP---KDL---PLIHSYNSIQA-L 94 (400)
Q Consensus 24 ~rlp~~~--p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~---~~~---~~~~~~~~~~~-l 94 (400)
..+.+|+ +.+||++|+|+|-....++-.+ ..+|+..|...-+..+...+-.+. ... -.+.... |.. +
T Consensus 78 ~~~~g~~~~~~~vlELGsGtglvG~~aa~~~---~~~v~ltD~~~~~~~L~~~~~~~~~~l~~~g~~v~v~~L~-Wg~~~ 153 (248)
T KOG2793|consen 78 ATLIGFKTKYINVLELGSGTGLVGILAALLL---GAEVVLTDLPKVVENLKFNRDKNNIALNQLGGSVIVAILV-WGNAL 153 (248)
T ss_pred hccccccccceeEEEecCCccHHHHHHHHHh---cceeccCCchhhHHHHHHhhhhhhhhhhhcCCceeEEEEe-cCCcc
Confidence 3566676 6789999999996655544433 357888887766554433322111 010 0111111 111 1
Q ss_pred hhhcccCCCc-ccEEeecccccCCCCHHHHHHHHHHHHhccCCeEEEE
Q 015771 95 NKDISKSERE-HDLVIASYVLGEVPSLQDRITIVRQLWDLTRDVLVLV 141 (400)
Q Consensus 95 ~~~l~~~~~~-~DLVias~~L~eL~~~~~r~~~i~~Lw~~~gG~LVlV 141 (400)
.... .... +|+|+++-++.+....+....++..|... ++.+.++
T Consensus 154 ~~~~--~~~~~~DlilasDvvy~~~~~e~Lv~tla~ll~~-~~~i~l~ 198 (248)
T KOG2793|consen 154 DVSF--RLPNPFDLILASDVVYEEESFEGLVKTLAFLLAK-DGTIFLA 198 (248)
T ss_pred cHhh--ccCCcccEEEEeeeeecCCcchhHHHHHHHHHhc-CCeEEEE
Confidence 1111 1223 99999999999888788888888888875 5544333
|
|
| >COG1092 Predicted SAM-dependent methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.04 E-value=0.11 Score=52.77 Aligned_cols=113 Identities=15% Similarity=0.084 Sum_probs=65.7
Q ss_pred CCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCCCC-----ceeechhhhHhhhhcccCCCc
Q 015771 30 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLP-----LIHSYNSIQALNKDISKSERE 104 (400)
Q Consensus 30 ~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~~~-----~~~~~~~~~~l~~~l~~~~~~ 104 (400)
++++|||+=|=||.++.+++. ....++|.||.|...++.|++.++=. ++. ++... -...+. .......+
T Consensus 217 ~GkrvLNlFsYTGgfSv~Aa~---gGA~~vt~VD~S~~al~~a~~N~~LN-g~~~~~~~~i~~D-vf~~l~-~~~~~g~~ 290 (393)
T COG1092 217 AGKRVLNLFSYTGGFSVHAAL---GGASEVTSVDLSKRALEWARENAELN-GLDGDRHRFIVGD-VFKWLR-KAERRGEK 290 (393)
T ss_pred cCCeEEEecccCcHHHHHHHh---cCCCceEEEeccHHHHHHHHHHHHhc-CCCccceeeehhh-HHHHHH-HHHhcCCc
Confidence 358999999999998877662 24459999999999999999988632 221 22111 011121 11223458
Q ss_pred ccEEee---cccccCCCCH---HHHHHHHHHHHh--ccCCeEEEEcCCCCCc
Q 015771 105 HDLVIA---SYVLGEVPSL---QDRITIVRQLWD--LTRDVLVLVEPGTPQG 148 (400)
Q Consensus 105 ~DLVia---s~~L~eL~~~---~~r~~~i~~Lw~--~~gG~LVlVE~Gtp~G 148 (400)
|||||+ +|+=+.-... .+-..++....+ .+||.|++.-....-.
T Consensus 291 fDlIilDPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s~~~~~~ 342 (393)
T COG1092 291 FDLIILDPPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSSCSRHFS 342 (393)
T ss_pred ccEEEECCcccccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEEecCCccC
Confidence 999997 2222111110 111123332222 2799999887755443
|
|
| >PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ] | Back alignment and domain information |
|---|
Probab=94.97 E-value=0.14 Score=48.02 Aligned_cols=103 Identities=15% Similarity=0.114 Sum_probs=58.8
Q ss_pred CCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCCC-CceeechhhhHhhhhcccCCCcccEEe
Q 015771 31 PAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDL-PLIHSYNSIQALNKDISKSEREHDLVI 109 (400)
Q Consensus 31 p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~~-~~~~~~~~~~~l~~~l~~~~~~~DLVi 109 (400)
..+||-+|+.+||.+--+++..+ ....|++||.|+.+.+-.-.+.+.-.|+ |.+.....-..+ ...-+..|+|.
T Consensus 74 gskVLYLGAasGTTVSHvSDIvg-~~G~VYaVEfs~r~~rdL~~la~~R~NIiPIl~DAr~P~~Y----~~lv~~VDvI~ 148 (229)
T PF01269_consen 74 GSKVLYLGAASGTTVSHVSDIVG-PDGVVYAVEFSPRSMRDLLNLAKKRPNIIPILEDARHPEKY----RMLVEMVDVIF 148 (229)
T ss_dssp T-EEEEETTTTSHHHHHHHHHHT-TTSEEEEEESSHHHHHHHHHHHHHSTTEEEEES-TTSGGGG----TTTS--EEEEE
T ss_pred CCEEEEecccCCCccchhhhccC-CCCcEEEEEecchhHHHHHHHhccCCceeeeeccCCChHHh----hcccccccEEE
Confidence 36999999999999988888876 3568999999996554333444333453 443221100111 11234788887
Q ss_pred ecccccCCCCHHHHHHHHHHH--HhccCCeEEEEcC
Q 015771 110 ASYVLGEVPSLQDRITIVRQL--WDLTRDVLVLVEP 143 (400)
Q Consensus 110 as~~L~eL~~~~~r~~~i~~L--w~~~gG~LVlVE~ 143 (400)
+--. . +.+...++.|. .-++||.++|+=.
T Consensus 149 ~DVa---Q--p~Qa~I~~~Na~~fLk~gG~~~i~iK 179 (229)
T PF01269_consen 149 QDVA---Q--PDQARIAALNARHFLKPGGHLIISIK 179 (229)
T ss_dssp EE-S---S--TTHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred ecCC---C--hHHHHHHHHHHHhhccCCcEEEEEEe
Confidence 6544 2 23333333333 3247898887743
|
It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A .... |
| >PF11312 DUF3115: Protein of unknown function (DUF3115); InterPro: IPR021463 This eukaryotic family of proteins has no known function | Back alignment and domain information |
|---|
Probab=94.97 E-value=0.074 Score=52.12 Aligned_cols=140 Identities=18% Similarity=0.206 Sum_probs=73.6
Q ss_pred hHHHHHHHHHHHHHHCCC-C---------CCCeEEEEccchhHHHHHHHHHC----CC--------------CCcEEEEE
Q 015771 11 CLLFTLLVTESFARRLPG-F---------SPAKVLDFGAGTGSAFWALREVW----PR--------------SLEKVNLV 62 (400)
Q Consensus 11 ~Ya~~~~vL~el~~rlp~-~---------~p~~VLDvG~G~Gt~~~Al~~~~----~~--------------~~~~v~~v 62 (400)
+|+.+..-|.++...+.. - +..+||-||.|.|+-+.|++.+| .. ....+++|
T Consensus 57 ~Yaslf~~l~~~l~~~~~~~~~~~~~~~~~~~~VlCIGGGAGAElVAlAa~~~~~~~~~~s~~~~~~~~~~~~~l~itlv 136 (315)
T PF11312_consen 57 AYASLFASLKEHLELLSCPEDESDEDEEKKSLRVLCIGGGAGAELVALAAAFRTRSSEFLSKSPSGVSLSSPPSLSITLV 136 (315)
T ss_pred HHHHHHHHHHHHHHhhccccccccccccccCceEEEECCChHHHHHHHHHHHhhcccccCCcccccccccCCCcceEEEE
Confidence 577776666666554421 1 12699999999999888888888 11 11389999
Q ss_pred eCCH--HHHH-HHHHhhcC-----------CCCC--CceeechhhhHhh----hhcc-c-CCCcccEEeecccccCCCCH
Q 015771 63 EPSQ--SMQR-AGQSLMQG-----------PKDL--PLIHSYNSIQALN----KDIS-K-SEREHDLVIASYVLGEVPSL 120 (400)
Q Consensus 63 D~S~--~ml~-~a~~ll~~-----------~~~~--~~~~~~~~~~~l~----~~l~-~-~~~~~DLVias~~L~eL~~~ 120 (400)
|+.+ ..++ +...+-.. .... ..+...+...|+- ..+. . .....|||+.-|+||||-+.
T Consensus 137 DiAdWs~VV~~L~~~i~s~p~~sk~a~~~~~~~~~~~~~~~~F~~~DvL~~~~~~l~~ll~~~~~~LITLlFTlNELfs~ 216 (315)
T PF11312_consen 137 DIADWSSVVDRLTTTITSPPPLSKYASAANWPLIEPDRFNVSFTQQDVLSLSEDDLKSLLGPPSPDLITLLFTLNELFST 216 (315)
T ss_pred EecChHHHHHHHHHhccCCCCccccccccccccCCccceeeeEEecccccCChHHHHHHhccchhHHHHHHHHHHHHHhc
Confidence 9764 2222 22222211 0000 0000001111110 0110 0 11257999999999999644
Q ss_pred H--HHHHHHHHHHhc--cCCeEEEEcCCCCCchHHH
Q 015771 121 Q--DRITIVRQLWDL--TRDVLVLVEPGTPQGSSII 152 (400)
Q Consensus 121 ~--~r~~~i~~Lw~~--~gG~LVlVE~Gtp~Gf~~I 152 (400)
. .-..++.+|-.. +|-.|+|||. |-.|..|
T Consensus 217 s~~kTt~FLl~Lt~~~~~GslLLVvDS--pGSYS~~ 250 (315)
T PF11312_consen 217 SISKTTKFLLRLTDICPPGSLLLVVDS--PGSYSEI 250 (315)
T ss_pred ChHHHHHHHHHHHhhcCCCcEEEEEcC--CCCchhe
Confidence 3 223455555443 4556667764 4444433
|
|
| >PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2 | Back alignment and domain information |
|---|
Probab=94.75 E-value=0.072 Score=49.00 Aligned_cols=106 Identities=13% Similarity=0.128 Sum_probs=60.1
Q ss_pred eEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhc--CCCCCCceeechhhhHhhhhcccCCCcccEEee
Q 015771 33 KVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQ--GPKDLPLIHSYNSIQALNKDISKSEREHDLVIA 110 (400)
Q Consensus 33 ~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~--~~~~~~~~~~~~~~~~l~~~l~~~~~~~DLVia 110 (400)
.+||+|||.|..+.+++...|+ ..+++||.+...+..+...+. ...|+-++..... ..+..-+ ..++.|-|..
T Consensus 20 l~lEIG~G~G~~l~~~A~~~Pd--~n~iGiE~~~~~v~~a~~~~~~~~l~Nv~~~~~da~-~~l~~~~--~~~~v~~i~i 94 (195)
T PF02390_consen 20 LILEIGCGKGEFLIELAKRNPD--INFIGIEIRKKRVAKALRKAEKRGLKNVRFLRGDAR-ELLRRLF--PPGSVDRIYI 94 (195)
T ss_dssp EEEEET-TTSHHHHHHHHHSTT--SEEEEEES-HHHHHHHHHHHHHHTTSSEEEEES-CT-THHHHHS--TTTSEEEEEE
T ss_pred eEEEecCCCCHHHHHHHHHCCC--CCEEEEecchHHHHHHHHHHHhhcccceEEEEccHH-HHHhhcc--cCCchheEEE
Confidence 8999999999999999998875 689999999998876666554 3344444432211 1122111 3456777766
Q ss_pred cccccCCCCHH--HH---HHHHHHHHhc--cCCeEEEEcC
Q 015771 111 SYVLGEVPSLQ--DR---ITIVRQLWDL--TRDVLVLVEP 143 (400)
Q Consensus 111 s~~L~eL~~~~--~r---~~~i~~Lw~~--~gG~LVlVE~ 143 (400)
.|-==+..... .| ..++..+.+. +||.|-|.-.
T Consensus 95 ~FPDPWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~TD 134 (195)
T PF02390_consen 95 NFPDPWPKKRHHKRRLVNPEFLELLARVLKPGGELYFATD 134 (195)
T ss_dssp ES-----SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEEES
T ss_pred eCCCCCcccchhhhhcCCchHHHHHHHHcCCCCEEEEEeC
Confidence 55321111000 11 1344444432 7998887743
|
1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B .... |
| >COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=94.65 E-value=0.36 Score=44.09 Aligned_cols=49 Identities=22% Similarity=0.241 Sum_probs=40.3
Q ss_pred CCCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCC
Q 015771 29 FSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK 80 (400)
Q Consensus 29 ~~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~ 80 (400)
+...++||+=+|+|+..+.+.. .....++.||.+.....+.++.++...
T Consensus 42 i~g~~~LDlFAGSGaLGlEAlS---RGA~~~~~vE~~~~a~~~l~~N~~~l~ 90 (187)
T COG0742 42 IEGARVLDLFAGSGALGLEALS---RGAARVVFVEKDRKAVKILKENLKALG 90 (187)
T ss_pred cCCCEEEEecCCccHhHHHHHh---CCCceEEEEecCHHHHHHHHHHHHHhC
Confidence 5668999999999998776553 346789999999999999888887654
|
|
| >COG4076 Predicted RNA methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.57 E-value=0.046 Score=49.75 Aligned_cols=41 Identities=22% Similarity=0.289 Sum_probs=34.7
Q ss_pred CeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhh
Q 015771 32 AKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLM 76 (400)
Q Consensus 32 ~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll 76 (400)
..+.|+|+|+|.++..+++ ...+|++++.+|...+.|++.+
T Consensus 34 d~~~DLGaGsGiLs~~Aa~----~A~rViAiE~dPk~a~~a~eN~ 74 (252)
T COG4076 34 DTFADLGAGSGILSVVAAH----AAERVIAIEKDPKRARLAEENL 74 (252)
T ss_pred hceeeccCCcchHHHHHHh----hhceEEEEecCcHHHHHhhhcC
Confidence 5899999999998776664 3568999999999999888875
|
|
| >COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.33 E-value=0.43 Score=45.05 Aligned_cols=105 Identities=11% Similarity=0.087 Sum_probs=63.8
Q ss_pred CeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCC--CCCceeechhhhHhhhhcccCCCcccEEe
Q 015771 32 AKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK--DLPLIHSYNSIQALNKDISKSEREHDLVI 109 (400)
Q Consensus 32 ~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~--~~~~~~~~~~~~~l~~~l~~~~~~~DLVi 109 (400)
..+||||||.|..+..++...|+ ..+++||+...-+..+...+.+.. |+-.+... ...+...+ .+.++.|-|.
T Consensus 50 pi~lEIGfG~G~~l~~~A~~nP~--~nfiGiEi~~~~v~~~l~k~~~~~l~Nlri~~~D--A~~~l~~~-~~~~sl~~I~ 124 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKNPE--KNFLGIEIRVPGVAKALKKIKELGLKNLRLLCGD--AVEVLDYL-IPDGSLDKIY 124 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHCCC--CCEEEEEEehHHHHHHHHHHHHcCCCcEEEEcCC--HHHHHHhc-CCCCCeeEEE
Confidence 47999999999999999999885 479999999988777766665431 33322211 11122222 2344778887
Q ss_pred ecccccCCCC--HH------HHHHHHHHHHhccCCeEEEEc
Q 015771 110 ASYVLGEVPS--LQ------DRITIVRQLWDLTRDVLVLVE 142 (400)
Q Consensus 110 as~~L~eL~~--~~------~r~~~i~~Lw~~~gG~LVlVE 142 (400)
..|-==+-.. .. ...+.+.+.++ +||.|-+.-
T Consensus 125 i~FPDPWpKkRH~KRRl~~~~fl~~~a~~Lk-~gG~l~~aT 164 (227)
T COG0220 125 INFPDPWPKKRHHKRRLTQPEFLKLYARKLK-PGGVLHFAT 164 (227)
T ss_pred EECCCCCCCccccccccCCHHHHHHHHHHcc-CCCEEEEEe
Confidence 7764222111 01 12233334442 799999873
|
|
| >PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=94.33 E-value=0.28 Score=53.84 Aligned_cols=83 Identities=16% Similarity=0.201 Sum_probs=51.2
Q ss_pred CCC-C-CCeEEEEccchhHHHHHHHHH------------CC-----C-----------------------CCcEEEEEeC
Q 015771 27 PGF-S-PAKVLDFGAGTGSAFWALREV------------WP-----R-----------------------SLEKVNLVEP 64 (400)
Q Consensus 27 p~~-~-p~~VLDvG~G~Gt~~~Al~~~------------~~-----~-----------------------~~~~v~~vD~ 64 (400)
.+| + ...++|-+||+||.++.++.. |+ . ...+++++|.
T Consensus 185 a~w~~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~~~~~~~i~G~Di 264 (702)
T PRK11783 185 SGWPQEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGLAELPSKFYGSDI 264 (702)
T ss_pred cCCCCCCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhcccccCceEEEEEC
Confidence 345 3 468999999999998865442 11 0 1126999999
Q ss_pred CHHHHHHHHHhhcCCCCCCceeechhhhHhhhhcc--cCCCcccEEeecc
Q 015771 65 SQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDIS--KSEREHDLVIASY 112 (400)
Q Consensus 65 S~~ml~~a~~ll~~~~~~~~~~~~~~~~~l~~~l~--~~~~~~DLVias~ 112 (400)
++.|++.|+..+...+-...+.. ...++.. ++ ...+.||+||++-
T Consensus 265 d~~av~~A~~N~~~~g~~~~i~~--~~~D~~~-~~~~~~~~~~d~IvtNP 311 (702)
T PRK11783 265 DPRVIQAARKNARRAGVAELITF--EVKDVAD-LKNPLPKGPTGLVISNP 311 (702)
T ss_pred CHHHHHHHHHHHHHcCCCcceEE--EeCChhh-cccccccCCCCEEEECC
Confidence 99999999999875432111111 0112221 21 1234699999873
|
|
| >COG4301 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.16 E-value=1.4 Score=42.02 Aligned_cols=116 Identities=15% Similarity=0.192 Sum_probs=75.0
Q ss_pred HHHHHHHHCCCCCCCeEEEEccchhHHHHHHHHHCCC--CCcEEEEEeCCHHHHH-HHHHhhcCCCCCCceeechhhhHh
Q 015771 18 VTESFARRLPGFSPAKVLDFGAGTGSAFWALREVWPR--SLEKVNLVEPSQSMQR-AGQSLMQGPKDLPLIHSYNSIQAL 94 (400)
Q Consensus 18 vL~el~~rlp~~~p~~VLDvG~G~Gt~~~Al~~~~~~--~~~~v~~vD~S~~ml~-~a~~ll~~~~~~~~~~~~~~~~~l 94 (400)
.-.||..+.+ +.+++|+|+|.-+=+..+.+.+.. +...|+.+|.|...++ .++.++.....++..-. ..++
T Consensus 69 ~a~Eia~~~g---~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ta~ai~~~y~~l~v~~l---~~~~ 142 (321)
T COG4301 69 RAAEIASITG---ACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRATATAILREYPGLEVNAL---CGDY 142 (321)
T ss_pred HHHHHHHhhC---cceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHHHHHHHHHhCCCCeEeeh---hhhH
Confidence 4457776644 579999999998776666655532 4578999999999886 67777776655443211 1222
Q ss_pred hhhcc--cCCCcccEEeecccccCCCCHHHHHHHHHHHHhc--cCCeEEE
Q 015771 95 NKDIS--KSEREHDLVIASYVLGEVPSLQDRITIVRQLWDL--TRDVLVL 140 (400)
Q Consensus 95 ~~~l~--~~~~~~DLVias~~L~eL~~~~~r~~~i~~Lw~~--~gG~LVl 140 (400)
...+. ...+.-=++....+|..+. +.+...++.++-.. ||.+++|
T Consensus 143 ~~~La~~~~~~~Rl~~flGStlGN~t-p~e~~~Fl~~l~~a~~pGd~~Ll 191 (321)
T COG4301 143 ELALAELPRGGRRLFVFLGSTLGNLT-PGECAVFLTQLRGALRPGDYFLL 191 (321)
T ss_pred HHHHhcccCCCeEEEEEecccccCCC-hHHHHHHHHHHHhcCCCcceEEE
Confidence 22221 1112223456778899995 78888888888654 7776664
|
|
| >COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=94.02 E-value=0.37 Score=48.03 Aligned_cols=118 Identities=14% Similarity=0.118 Sum_probs=72.9
Q ss_pred HHHHHHHHHHHHHCCCCCCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCCCCc--eeechh
Q 015771 13 LFTLLVTESFARRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPL--IHSYNS 90 (400)
Q Consensus 13 a~~~~vL~el~~rlp~~~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~~~~--~~~~~~ 90 (400)
+.+.+++..+.+-.++ ..|||==||||+.++.+. . ....+++.|++..|++-|+..++...-..+ ...
T Consensus 183 P~lAR~mVNLa~v~~G---~~vlDPFcGTGgiLiEag-l---~G~~viG~Did~~mv~gak~Nl~~y~i~~~~~~~~--- 252 (347)
T COG1041 183 PRLARAMVNLARVKRG---ELVLDPFCGTGGILIEAG-L---MGARVIGSDIDERMVRGAKINLEYYGIEDYPVLKV--- 252 (347)
T ss_pred HHHHHHHHHHhccccC---CEeecCcCCccHHHHhhh-h---cCceEeecchHHHHHhhhhhhhhhhCcCceeEEEe---
Confidence 3456677777654333 689999999999998765 3 346899999999999999999987641111 211
Q ss_pred hhHhhhhcccCCCcccEEeec--ccccC-CCC------HHHHHHHHHHHHhccCCeEEEEcC
Q 015771 91 IQALNKDISKSEREHDLVIAS--YVLGE-VPS------LQDRITIVRQLWDLTRDVLVLVEP 143 (400)
Q Consensus 91 ~~~l~~~l~~~~~~~DLVias--~~L~e-L~~------~~~r~~~i~~Lw~~~gG~LVlVE~ 143 (400)
.+. ..++....++|-|++- |.-+. ... ..+..+.+..+++ +||++|+.-|
T Consensus 253 -~Da-~~lpl~~~~vdaIatDPPYGrst~~~~~~l~~Ly~~~le~~~evLk-~gG~~vf~~p 311 (347)
T COG1041 253 -LDA-TNLPLRDNSVDAIATDPPYGRSTKIKGEGLDELYEEALESASEVLK-PGGRIVFAAP 311 (347)
T ss_pred -ccc-ccCCCCCCccceEEecCCCCcccccccccHHHHHHHHHHHHHHHhh-cCcEEEEecC
Confidence 011 1344444569998763 22221 110 1112233333332 5899999977
|
|
| >PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A | Back alignment and domain information |
|---|
Probab=93.91 E-value=0.11 Score=49.53 Aligned_cols=109 Identities=17% Similarity=0.150 Sum_probs=57.6
Q ss_pred CCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCCCCceeechhhhHhhhhcccCCCcccEEee
Q 015771 31 PAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDISKSEREHDLVIA 110 (400)
Q Consensus 31 p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~~~~~~~~~~~~~l~~~l~~~~~~~DLVia 110 (400)
|.+|||+|||.=-+++.....- ....|++.|++..+++.....+.-.+ .+. . ..+.++..+ .+....||.+.
T Consensus 106 p~sVlDigCGlNPlalp~~~~~--~~a~Y~a~DID~~~ve~l~~~l~~l~-~~~-~--~~v~Dl~~~--~~~~~~DlaLl 177 (251)
T PF07091_consen 106 PDSVLDIGCGLNPLALPWMPEA--PGATYIAYDIDSQLVEFLNAFLAVLG-VPH-D--ARVRDLLSD--PPKEPADLALL 177 (251)
T ss_dssp -SEEEEET-TTCHHHHHTTTSS--TT-EEEEEESBHHHHHHHHHHHHHTT--CE-E--EEEE-TTTS--HTTSEESEEEE
T ss_pred CchhhhhhccCCceehhhcccC--CCcEEEEEeCCHHHHHHHHHHHHhhC-CCc-c--eeEeeeecc--CCCCCcchhhH
Confidence 7899999999644433222211 24599999999999999888876442 111 1 111223222 24567899988
Q ss_pred cccccCCCCHHHHHHHHHHHHhc-cCCeEEEEcCCCCCch
Q 015771 111 SYVLGEVPSLQDRITIVRQLWDL-TRDVLVLVEPGTPQGS 149 (400)
Q Consensus 111 s~~L~eL~~~~~r~~~i~~Lw~~-~gG~LVlVE~Gtp~Gf 149 (400)
--+|.-|. .++....-+++.. ..-.+|+..|-.-.|-
T Consensus 178 lK~lp~le--~q~~g~g~~ll~~~~~~~~vVSfPtrSL~g 215 (251)
T PF07091_consen 178 LKTLPCLE--RQRRGAGLELLDALRSPHVVVSFPTRSLGG 215 (251)
T ss_dssp ET-HHHHH--HHSTTHHHHHHHHSCESEEEEEEES-----
T ss_pred HHHHHHHH--HHhcchHHHHHHHhCCCeEEEecccccccc
Confidence 88777663 1222222333333 3457777777544443
|
|
| >TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase | Back alignment and domain information |
|---|
Probab=93.51 E-value=0.37 Score=48.83 Aligned_cols=100 Identities=10% Similarity=0.066 Sum_probs=59.4
Q ss_pred CCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCCCCceeechhhhHhhhhcccCCCcccEEee
Q 015771 31 PAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDISKSEREHDLVIA 110 (400)
Q Consensus 31 p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~~~~~~~~~~~~~l~~~l~~~~~~~DLVia 110 (400)
+.+|||+-||+|...+.++...+ ...+|+++|.|+...+..+..++... ...+... ..+....+.....+||+|..
T Consensus 45 ~~~vLD~faGsG~rgir~a~e~~-ga~~Vv~nD~n~~Av~~i~~N~~~N~-~~~~~v~--~~Da~~~l~~~~~~fDvIdl 120 (374)
T TIGR00308 45 YINIADALSASGIRAIRYAHEIE-GVREVFANDINPKAVESIKNNVEYNS-VENIEVP--NEDAANVLRYRNRKFHVIDI 120 (374)
T ss_pred CCEEEECCCchhHHHHHHHhhCC-CCCEEEEEeCCHHHHHHHHHHHHHhC-CCcEEEE--chhHHHHHHHhCCCCCEEEe
Confidence 45899999999998887665432 34689999999999999988875431 2111110 11222222212357999977
Q ss_pred cccccCCCCHHHHHHHHHHHHhc--cCCeEEEE
Q 015771 111 SYVLGEVPSLQDRITIVRQLWDL--TRDVLVLV 141 (400)
Q Consensus 111 s~~L~eL~~~~~r~~~i~~Lw~~--~gG~LVlV 141 (400)
-- .. .+ . .++....+. .+|.|.+-
T Consensus 121 DP-fG-s~--~---~fld~al~~~~~~glL~vT 146 (374)
T TIGR00308 121 DP-FG-TP--A---PFVDSAIQASAERGLLLVT 146 (374)
T ss_pred CC-CC-Cc--H---HHHHHHHHhcccCCEEEEE
Confidence 43 22 22 1 233333332 46777766
|
This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes. |
| >KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=93.13 E-value=0.52 Score=45.16 Aligned_cols=97 Identities=18% Similarity=0.269 Sum_probs=58.8
Q ss_pred HHHHHHHHCCCCCCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCCCCceeechhhhHhhhh
Q 015771 18 VTESFARRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKD 97 (400)
Q Consensus 18 vL~el~~rlp~~~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~~~~~~~~~~~~~l~~~ 97 (400)
++..|+.| | ....|-|+|||-+-.+. . ...+|+..|.-+. +..++.+ ++. .
T Consensus 171 ii~~ik~r-~--~~~vIaD~GCGEakiA~--~-----~~~kV~SfDL~a~-------------~~~V~~c-----Dm~-~ 221 (325)
T KOG3045|consen 171 IIRKIKRR-P--KNIVIADFGCGEAKIAS--S-----ERHKVHSFDLVAV-------------NERVIAC-----DMR-N 221 (325)
T ss_pred HHHHHHhC-c--CceEEEecccchhhhhh--c-----cccceeeeeeecC-------------CCceeec-----ccc-C
Confidence 44455544 2 23689999999876542 1 2356888884211 1111211 233 2
Q ss_pred cccCCCcccEEeecccccCCCCHHHHHHHHHHHHhccCCeEEEEcCCC
Q 015771 98 ISKSEREHDLVIASYVLGEVPSLQDRITIVRQLWDLTRDVLVLVEPGT 145 (400)
Q Consensus 98 l~~~~~~~DLVias~~L~eL~~~~~r~~~i~~Lw~~~gG~LVlVE~Gt 145 (400)
+|..+++.|++|+..+|+--. ..+-..-...+++ +||.|-|.|-.+
T Consensus 222 vPl~d~svDvaV~CLSLMgtn-~~df~kEa~RiLk-~gG~l~IAEv~S 267 (325)
T KOG3045|consen 222 VPLEDESVDVAVFCLSLMGTN-LADFIKEANRILK-PGGLLYIAEVKS 267 (325)
T ss_pred CcCccCcccEEEeeHhhhccc-HHHHHHHHHHHhc-cCceEEEEehhh
Confidence 566778999999998887653 4444444555553 799999999754
|
|
| >COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=93.08 E-value=1.6 Score=40.46 Aligned_cols=47 Identities=19% Similarity=0.180 Sum_probs=35.9
Q ss_pred HHHHHHHCCCCCC-CeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCH
Q 015771 19 TESFARRLPGFSP-AKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQ 66 (400)
Q Consensus 19 L~el~~rlp~~~p-~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~ 66 (400)
|.||.++..-|++ ..|+|+||-||.-+-.++...+ ....|+++|.-+
T Consensus 33 L~el~~k~~i~~~~~~ViDLGAAPGgWsQva~~~~~-~~~~ivavDi~p 80 (205)
T COG0293 33 LLELNEKFKLFKPGMVVVDLGAAPGGWSQVAAKKLG-AGGKIVAVDILP 80 (205)
T ss_pred HHHHHHhcCeecCCCEEEEcCCCCCcHHHHHHHHhC-CCCcEEEEECcc
Confidence 6677777655665 7999999999998887777665 234599999755
|
|
| >COG1565 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=92.87 E-value=0.51 Score=47.23 Aligned_cols=58 Identities=19% Similarity=0.386 Sum_probs=43.1
Q ss_pred HHHCCCCCCCeEEEEccchhHHHHHHHH----HCCC--CCcEEEEEeCCHHHHHHHHHhhcCCC
Q 015771 23 ARRLPGFSPAKVLDFGAGTGSAFWALRE----VWPR--SLEKVNLVEPSQSMQRAGQSLMQGPK 80 (400)
Q Consensus 23 ~~rlp~~~p~~VLDvG~G~Gt~~~Al~~----~~~~--~~~~v~~vD~S~~ml~~a~~ll~~~~ 80 (400)
-.+++...|..|+++|+|.|+.+.-+.. ..|+ ...+|..||+|+++.++=+..+++..
T Consensus 70 wq~~g~p~~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L~~~Qk~~L~~~~ 133 (370)
T COG1565 70 WQELGRPAPLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPELRARQKETLKATE 133 (370)
T ss_pred HHHhcCCCCceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHHHHHHHHHHHhccc
Confidence 3445566778999999999998754332 2221 24689999999999998888887754
|
|
| >KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=92.79 E-value=0.24 Score=49.68 Aligned_cols=58 Identities=24% Similarity=0.240 Sum_probs=44.9
Q ss_pred HHHHHHHHHHCCCCCC-CeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhh
Q 015771 16 LLVTESFARRLPGFSP-AKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLM 76 (400)
Q Consensus 16 ~~vL~el~~rlp~~~p-~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll 76 (400)
-++|.|+...+.+|.| ..|.|+|+|.|..+..+.-- ....|.+||.|....+.|+++=
T Consensus 138 i~~lselvSsi~~f~gi~~vvD~GaG~G~LSr~lSl~---y~lsV~aIegsq~~~~ra~rLd 196 (476)
T KOG2651|consen 138 IRRLSELVSSISDFTGIDQVVDVGAGQGHLSRFLSLG---YGLSVKAIEGSQRLVERAQRLD 196 (476)
T ss_pred HHHHHHHHHHHHhhcCCCeeEEcCCCchHHHHHHhhc---cCceEEEeccchHHHHHHHHHH
Confidence 3567888877777776 68999999999988766533 3468999999988777776653
|
|
| >PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=92.53 E-value=0.9 Score=47.96 Aligned_cols=109 Identities=17% Similarity=0.129 Sum_probs=64.2
Q ss_pred CCCCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcC--CCCCCceeechhhhHhhhhcccCCCcc
Q 015771 28 GFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQG--PKDLPLIHSYNSIQALNKDISKSEREH 105 (400)
Q Consensus 28 ~~~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~--~~~~~~~~~~~~~~~l~~~l~~~~~~~ 105 (400)
+.....+||+|||.|..+..++...|+ ..+++||.+..-+..+...+.. ..|+-.+... ...+...+ ..++.
T Consensus 345 ~~~~p~~lEIG~G~G~~~~~~A~~~p~--~~~iGiE~~~~~~~~~~~~~~~~~l~N~~~~~~~--~~~~~~~~--~~~sv 418 (506)
T PRK01544 345 NEKRKVFLEIGFGMGEHFINQAKMNPD--ALFIGVEVYLNGVANVLKLAGEQNITNFLLFPNN--LDLILNDL--PNNSL 418 (506)
T ss_pred CCCCceEEEECCCchHHHHHHHHhCCC--CCEEEEEeeHHHHHHHHHHHHHcCCCeEEEEcCC--HHHHHHhc--Ccccc
Confidence 344568999999999999999988875 5799999999876655554432 2233222211 11122222 34567
Q ss_pred cEEeecccccCCCC--HHHHH---HHHHHHHhc--cCCeEEEEc
Q 015771 106 DLVIASYVLGEVPS--LQDRI---TIVRQLWDL--TRDVLVLVE 142 (400)
Q Consensus 106 DLVias~~L~eL~~--~~~r~---~~i~~Lw~~--~gG~LVlVE 142 (400)
|-|...|-==+-.. ...|+ .++..+.+. +||.+-+.-
T Consensus 419 ~~i~i~FPDPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~~T 462 (506)
T PRK01544 419 DGIYILFPDPWIKNKQKKKRIFNKERLKILQDKLKDNGNLVFAS 462 (506)
T ss_pred cEEEEECCCCCCCCCCccccccCHHHHHHHHHhcCCCCEEEEEc
Confidence 88877664322211 11121 244444432 799888773
|
|
| >COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=92.47 E-value=1.2 Score=44.97 Aligned_cols=111 Identities=17% Similarity=0.132 Sum_probs=67.0
Q ss_pred CCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCCC--CceeechhhhHhhhhcccCCCcccEE
Q 015771 31 PAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDL--PLIHSYNSIQALNKDISKSEREHDLV 108 (400)
Q Consensus 31 p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~~--~~~~~~~~~~~l~~~l~~~~~~~DLV 108 (400)
+.+|||+.++||.=+-.+++...+....|+++|.|+.-++..+..+++.+-. ..+.... ..+.. ......+||.|
T Consensus 157 ge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~nv~~~~~d~--~~~~~-~~~~~~~fD~i 233 (355)
T COG0144 157 GERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVRNVIVVNKDA--RRLAE-LLPGGEKFDRI 233 (355)
T ss_pred cCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCCceEEEeccc--ccccc-cccccCcCcEE
Confidence 3799999999998777777777654556799999999988888888765422 1111110 00110 11122369999
Q ss_pred ee------cccccCCCC------HH-------HHHHHHHHHHhc--cCCeEEEEcCC
Q 015771 109 IA------SYVLGEVPS------LQ-------DRITIVRQLWDL--TRDVLVLVEPG 144 (400)
Q Consensus 109 ia------s~~L~eL~~------~~-------~r~~~i~~Lw~~--~gG~LVlVE~G 144 (400)
++ +.++.-=|+ .. -..++|...|+. +||.||-.--.
T Consensus 234 LlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYSTCS 290 (355)
T COG0144 234 LLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYSTCS 290 (355)
T ss_pred EECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEccC
Confidence 75 223321121 11 123466666654 79999987654
|
|
| >PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function | Back alignment and domain information |
|---|
Probab=91.44 E-value=0.37 Score=45.89 Aligned_cols=49 Identities=16% Similarity=0.302 Sum_probs=38.0
Q ss_pred CCCeEEEEccchhHHHHHHHHHCCCC------CcEEEEEeCCHHHHHHHHHhhcC
Q 015771 30 SPAKVLDFGAGTGSAFWALREVWPRS------LEKVNLVEPSQSMQRAGQSLMQG 78 (400)
Q Consensus 30 ~p~~VLDvG~G~Gt~~~Al~~~~~~~------~~~v~~vD~S~~ml~~a~~ll~~ 78 (400)
.|.+|+++|+|.|+++..+...+... ..+|+.||.|+.|.+.-++.+..
T Consensus 18 ~~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~~~Q~~~L~~ 72 (252)
T PF02636_consen 18 EPLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLRERQKERLSE 72 (252)
T ss_dssp S-EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCHHHHHHHCCC
T ss_pred cCcEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHHHHHHHHhhh
Confidence 35799999999999998877766532 25899999999999988888865
|
; PDB: 4F3N_A 1ZKD_B. |
| >PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases | Back alignment and domain information |
|---|
Probab=91.42 E-value=1.3 Score=38.55 Aligned_cols=97 Identities=20% Similarity=0.297 Sum_probs=59.0
Q ss_pred EEEEEeCCHHHHHHHHHhhcCCCC---CCceeechhhhHhhhhcccCCCcccEEeecccccCCCCHH--------HHHHH
Q 015771 58 KVNLVEPSQSMQRAGQSLMQGPKD---LPLIHSYNSIQALNKDISKSEREHDLVIASYVLGEVPSLQ--------DRITI 126 (400)
Q Consensus 58 ~v~~vD~S~~ml~~a~~ll~~~~~---~~~~~~~~~~~~l~~~l~~~~~~~DLVias~~L~eL~~~~--------~r~~~ 126 (400)
+|++.|+=+++++..++++++... +..+. .+...+...++ .++.|+||.+ |+.||..+ .-...
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~~~~~~v~li~--~sHe~l~~~i~--~~~v~~~iFN--LGYLPggDk~i~T~~~TTl~A 74 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEAGLEDRVTLIL--DSHENLDEYIP--EGPVDAAIFN--LGYLPGGDKSITTKPETTLKA 74 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHTT-GSGEEEEE--S-GGGGGGT----S--EEEEEEE--ESB-CTS-TTSB--HHHHHHH
T ss_pred CEEEEECHHHHHHHHHHHHHhcCCCCcEEEEE--CCHHHHHhhCc--cCCcCEEEEE--CCcCCCCCCCCCcCcHHHHHH
Confidence 589999999999999999976532 22222 12233443332 2478887754 57777532 34456
Q ss_pred HHHHHhc--cCCeEEEE-cCCCCCchHHHHHHHHHHH
Q 015771 127 VRQLWDL--TRDVLVLV-EPGTPQGSSIISQMRSHIL 160 (400)
Q Consensus 127 i~~Lw~~--~gG~LVlV-E~Gtp~Gf~~I~~aR~~lL 160 (400)
+++.++. +||.|+|| =+|++.|.+--....+++-
T Consensus 75 l~~al~lL~~gG~i~iv~Y~GH~gG~eE~~av~~~~~ 111 (140)
T PF06962_consen 75 LEAALELLKPGGIITIVVYPGHPGGKEESEAVEEFLA 111 (140)
T ss_dssp HHHHHHHEEEEEEEEEEE--STCHHHHHHHHHHHHHH
T ss_pred HHHHHHhhccCCEEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 6666664 78977765 7899999988877787763
|
; PDB: 3EEY_H 3LBY_A 3MTI_A. |
| >KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=91.38 E-value=1.8 Score=42.89 Aligned_cols=113 Identities=17% Similarity=0.164 Sum_probs=65.8
Q ss_pred CCCCC-CeEEEEccch-hHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCCCCceeechhhhHhhhhcc--cCC
Q 015771 27 PGFSP-AKVLDFGAGT-GSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDIS--KSE 102 (400)
Q Consensus 27 p~~~p-~~VLDvG~G~-Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~~~~~~~~~~~~~l~~~l~--~~~ 102 (400)
.++++ .+||=+|+|| |..+...++.++ ..+|+.+|.++.-++.|++ +......+.-+. .+.+.+.+.+. ...
T Consensus 165 ~~vk~Gs~vLV~GAGPIGl~t~l~Aka~G--A~~VVi~d~~~~Rle~Ak~-~Ga~~~~~~~~~-~~~~~~~~~v~~~~g~ 240 (354)
T KOG0024|consen 165 AGVKKGSKVLVLGAGPIGLLTGLVAKAMG--ASDVVITDLVANRLELAKK-FGATVTDPSSHK-SSPQELAELVEKALGK 240 (354)
T ss_pred cCcccCCeEEEECCcHHHHHHHHHHHHcC--CCcEEEeecCHHHHHHHHH-hCCeEEeecccc-ccHHHHHHHHHhhccc
Confidence 34544 6999999998 666667777776 5789999999999999999 533211111111 11222221111 122
Q ss_pred CcccEEeecccccCCCCHHHHHHHHHHHHhccCCeEEEEcCCCCC-chH
Q 015771 103 REHDLVIASYVLGEVPSLQDRITIVRQLWDLTRDVLVLVEPGTPQ-GSS 150 (400)
Q Consensus 103 ~~~DLVias~~L~eL~~~~~r~~~i~~Lw~~~gG~LVlVE~Gtp~-Gf~ 150 (400)
..+|..+-.--+.-- . ...|..+ +.+|.+|++.-|.+. -|-
T Consensus 241 ~~~d~~~dCsG~~~~----~-~aai~a~--r~gGt~vlvg~g~~~~~fp 282 (354)
T KOG0024|consen 241 KQPDVTFDCSGAEVT----I-RAAIKAT--RSGGTVVLVGMGAEEIQFP 282 (354)
T ss_pred cCCCeEEEccCchHH----H-HHHHHHh--ccCCEEEEeccCCCccccC
Confidence 347877755433211 1 1123222 369999999987643 454
|
|
| >COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.00 E-value=1.2 Score=44.63 Aligned_cols=40 Identities=30% Similarity=0.522 Sum_probs=34.6
Q ss_pred CeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHH
Q 015771 32 AKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQ 73 (400)
Q Consensus 32 ~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~ 73 (400)
.+||=+|.|-|-++..+.. +| ...+++.||.+|.|++.++
T Consensus 291 ~~vLvlGGGDGLAlRellk-yP-~~~qI~lVdLDP~miela~ 330 (508)
T COG4262 291 RSVLVLGGGDGLALRELLK-YP-QVEQITLVDLDPRMIELAS 330 (508)
T ss_pred ceEEEEcCCchHHHHHHHh-CC-CcceEEEEecCHHHHHHhh
Confidence 5899999999988877763 44 4789999999999999998
|
|
| >PHA01634 hypothetical protein | Back alignment and domain information |
|---|
Probab=90.74 E-value=0.53 Score=40.37 Aligned_cols=48 Identities=15% Similarity=0.082 Sum_probs=38.0
Q ss_pred CCCCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcC
Q 015771 28 GFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQG 78 (400)
Q Consensus 28 ~~~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~ 78 (400)
+++.++|+|+|++-|..++.++- .....|+++|+++.+.++.+..++.
T Consensus 26 dvk~KtV~dIGA~iGdSaiYF~l---~GAK~Vva~E~~~kl~k~~een~k~ 73 (156)
T PHA01634 26 NVYQRTIQIVGADCGSSALYFLL---RGASFVVQYEKEEKLRKKWEEVCAY 73 (156)
T ss_pred eecCCEEEEecCCccchhhHHhh---cCccEEEEeccCHHHHHHHHHHhhh
Confidence 46779999999999976554331 2567999999999999998887654
|
|
| >KOG1331 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=90.56 E-value=0.21 Score=48.33 Aligned_cols=94 Identities=13% Similarity=0.122 Sum_probs=64.2
Q ss_pred CCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCCCCceeechhhhHhhhhcccCCCcccEEee
Q 015771 31 PAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDISKSEREHDLVIA 110 (400)
Q Consensus 31 p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~~~~~~~~~~~~~l~~~l~~~~~~~DLVia 110 (400)
...+||+|||-|-.+ ... ...-+.+.|.+...+..++..=.. +.. ..+.. .+|.....||.+++
T Consensus 46 gsv~~d~gCGngky~----~~~--p~~~~ig~D~c~~l~~~ak~~~~~--~~~-------~ad~l-~~p~~~~s~d~~ls 109 (293)
T KOG1331|consen 46 GSVGLDVGCGNGKYL----GVN--PLCLIIGCDLCTGLLGGAKRSGGD--NVC-------RADAL-KLPFREESFDAALS 109 (293)
T ss_pred cceeeecccCCcccC----cCC--CcceeeecchhhhhccccccCCCc--eee-------hhhhh-cCCCCCCccccchh
Confidence 357999999987543 111 234678899998887776652111 111 11111 34556778999999
Q ss_pred cccccCCCCHHHHHHHHHHHHhc--cCCeEEE
Q 015771 111 SYVLGEVPSLQDRITIVRQLWDL--TRDVLVL 140 (400)
Q Consensus 111 s~~L~eL~~~~~r~~~i~~Lw~~--~gG~LVl 140 (400)
.-++++|.+...|..+++.+.+. +||..++
T Consensus 110 iavihhlsT~~RR~~~l~e~~r~lrpgg~~lv 141 (293)
T KOG1331|consen 110 IAVIHHLSTRERRERALEELLRVLRPGGNALV 141 (293)
T ss_pred hhhhhhhhhHHHHHHHHHHHHHHhcCCCceEE
Confidence 99999999888888999999875 7775443
|
|
| >PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=90.28 E-value=0.52 Score=47.05 Aligned_cols=111 Identities=16% Similarity=0.155 Sum_probs=59.4
Q ss_pred CCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCCCCceeechhhhHhhhhcccCCCcccEEe
Q 015771 30 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDISKSEREHDLVI 109 (400)
Q Consensus 30 ~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~~~~~~~~~~~~~l~~~l~~~~~~~DLVi 109 (400)
...++||+||+||..++.+.+ ...+|++||.++ | +..+... +.+...... .+. ..+ ..+.+|+|+
T Consensus 211 ~g~~vlDLGAsPGGWT~~L~~----rG~~V~AVD~g~-l---~~~L~~~-~~V~h~~~d----~fr-~~p-~~~~vDwvV 275 (357)
T PRK11760 211 PGMRAVDLGAAPGGWTYQLVR----RGMFVTAVDNGP-M---AQSLMDT-GQVEHLRAD----GFK-FRP-PRKNVDWLV 275 (357)
T ss_pred CCCEEEEeCCCCcHHHHHHHH----cCCEEEEEechh-c---CHhhhCC-CCEEEEecc----Ccc-cCC-CCCCCCEEE
Confidence 447999999999999998885 345999999554 2 2333322 222211110 011 112 256799999
Q ss_pred ecccccCCCCHHHHHHHHHHHHhc--cCCeEEEEcCCCCCchHHHHHHHHHH
Q 015771 110 ASYVLGEVPSLQDRITIVRQLWDL--TRDVLVLVEPGTPQGSSIISQMRSHI 159 (400)
Q Consensus 110 as~~L~eL~~~~~r~~~i~~Lw~~--~gG~LVlVE~Gtp~Gf~~I~~aR~~l 159 (400)
|--+-. +..-..++...+.. ....++-+----..-|+.+....+.|
T Consensus 276 cDmve~----P~rva~lm~~Wl~~g~cr~aIfnLKlpmk~r~~~v~~~l~~i 323 (357)
T PRK11760 276 CDMVEK----PARVAELMAQWLVNGWCREAIFNLKLPMKKRYEEVRQCLELI 323 (357)
T ss_pred EecccC----HHHHHHHHHHHHhcCcccEEEEEEEcCCCCCHHHHHHHHHHH
Confidence 876521 33333444444332 12233333323344566666655554
|
|
| >KOG1501 consensus Arginine N-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=89.90 E-value=0.6 Score=47.74 Aligned_cols=65 Identities=20% Similarity=0.105 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHHHHCCCCCCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCC
Q 015771 12 LLFTLLVTESFARRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK 80 (400)
Q Consensus 12 Ya~~~~vL~el~~rlp~~~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~ 80 (400)
|+.+...+.|.++++.+ .-.-|||||.|||.++..+... ....++++|.=..|.+.|+++....+
T Consensus 49 ~~gi~~tIte~kh~~~~-gkv~vLdigtGTGLLSmMAvra---gaD~vtA~EvfkPM~d~arkI~~kng 113 (636)
T KOG1501|consen 49 RLGIEKTITEPKHVLDI-GKVFVLDIGTGTGLLSMMAVRA---GADSVTACEVFKPMVDLARKIMHKNG 113 (636)
T ss_pred HHHHHHHhcccceeccC-ceEEEEEccCCccHHHHHHHHh---cCCeEEeehhhchHHHHHHHHHhcCC
Confidence 45566677777777533 2247999999999887665543 34579999999999999999997643
|
|
| >KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=89.62 E-value=0.44 Score=49.59 Aligned_cols=42 Identities=29% Similarity=0.271 Sum_probs=36.9
Q ss_pred CeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhc
Q 015771 32 AKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQ 77 (400)
Q Consensus 32 ~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~ 77 (400)
..+||+-||||+..++++. ....|++||.|+....-|+..+.
T Consensus 385 k~llDv~CGTG~iglala~----~~~~ViGvEi~~~aV~dA~~nA~ 426 (534)
T KOG2187|consen 385 KTLLDVCCGTGTIGLALAR----GVKRVIGVEISPDAVEDAEKNAQ 426 (534)
T ss_pred cEEEEEeecCCceehhhhc----cccceeeeecChhhcchhhhcch
Confidence 6899999999999999884 56789999999999998887664
|
|
| >PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family | Back alignment and domain information |
|---|
Probab=89.46 E-value=0.69 Score=42.79 Aligned_cols=76 Identities=18% Similarity=0.081 Sum_probs=42.9
Q ss_pred CCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCCCCceeechhhhHhhhhcccCCCcccEEee
Q 015771 31 PAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDISKSEREHDLVIA 110 (400)
Q Consensus 31 p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~~~~~~~~~~~~~l~~~l~~~~~~~DLVia 110 (400)
..+|||.-||-|..++.++..- ....|+++|.+|...+..++.++-..-...+... ..|.. .+. ....+|-|++
T Consensus 102 ~e~VlD~faGIG~f~l~~ak~~--~~~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~--~~D~~-~~~-~~~~~drvim 175 (200)
T PF02475_consen 102 GEVVLDMFAGIGPFSLPIAKHG--KAKRVYAVDLNPDAVEYLKENIRLNKVENRIEVI--NGDAR-EFL-PEGKFDRVIM 175 (200)
T ss_dssp T-EEEETT-TTTTTHHHHHHHT---SSEEEEEES-HHHHHHHHHHHHHTT-TTTEEEE--ES-GG-G----TT-EEEEEE
T ss_pred ceEEEEccCCccHHHHHHhhhc--CccEEEEecCCHHHHHHHHHHHHHcCCCCeEEEE--cCCHH-Hhc-CccccCEEEE
Confidence 3699999999999888877542 3568999999999988887776532111111110 11222 121 1568898877
Q ss_pred cc
Q 015771 111 SY 112 (400)
Q Consensus 111 s~ 112 (400)
.+
T Consensus 176 ~l 177 (200)
T PF02475_consen 176 NL 177 (200)
T ss_dssp --
T ss_pred CC
Confidence 65
|
Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A. |
| >COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=89.45 E-value=4.9 Score=40.24 Aligned_cols=45 Identities=22% Similarity=0.167 Sum_probs=36.8
Q ss_pred CCeEEEEccch-hHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhc
Q 015771 31 PAKVLDFGAGT-GSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQ 77 (400)
Q Consensus 31 p~~VLDvG~G~-Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~ 77 (400)
+.+|+=+|||| |.++.+++...+ ..+|+++|.++.-+++|++...
T Consensus 169 ~~~V~V~GaGpIGLla~~~a~~~G--a~~Viv~d~~~~Rl~~A~~~~g 214 (350)
T COG1063 169 GGTVVVVGAGPIGLLAIALAKLLG--ASVVIVVDRSPERLELAKEAGG 214 (350)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcC--CceEEEeCCCHHHHHHHHHhCC
Confidence 34899999998 666667777765 5789999999999999998554
|
|
| >cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1 | Back alignment and domain information |
|---|
Probab=88.37 E-value=7.1 Score=39.32 Aligned_cols=45 Identities=16% Similarity=0.142 Sum_probs=35.5
Q ss_pred CCCeEEEEccch-hHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhh
Q 015771 30 SPAKVLDFGAGT-GSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLM 76 (400)
Q Consensus 30 ~p~~VLDvG~G~-Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll 76 (400)
...+||.+|+|+ |..+..++...+ ..++++++.++++++.++.+.
T Consensus 184 ~g~~VlV~g~G~vG~~~~~la~~~g--~~~vi~~~~~~~~~~~~~~~~ 229 (386)
T cd08283 184 PGDTVAVWGCGPVGLFAARSAKLLG--AERVIAIDRVPERLEMARSHL 229 (386)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcC--CCEEEEEcCCHHHHHHHHHcC
Confidence 347899999987 777777777664 246999999999999988753
|
Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T |
| >COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=88.23 E-value=4.8 Score=37.39 Aligned_cols=102 Identities=13% Similarity=0.161 Sum_probs=59.6
Q ss_pred CCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCCC-CceeechhhhHhhhhcccCCCcccEE
Q 015771 30 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDL-PLIHSYNSIQALNKDISKSEREHDLV 108 (400)
Q Consensus 30 ~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~~-~~~~~~~~~~~l~~~l~~~~~~~DLV 108 (400)
...+||=+|+-+||.+--+++.-+ ...+++||.|+.+.+-.-.+++.-.|+ |.+.....-+.+. ..-+..|+|
T Consensus 76 ~g~~VLYLGAasGTTvSHVSDIv~--~G~iYaVEfs~R~~reLl~~a~~R~Ni~PIL~DA~~P~~Y~----~~Ve~VDvi 149 (231)
T COG1889 76 EGSKVLYLGAASGTTVSHVSDIVG--EGRIYAVEFSPRPMRELLDVAEKRPNIIPILEDARKPEKYR----HLVEKVDVI 149 (231)
T ss_pred CCCEEEEeeccCCCcHhHHHhccC--CCcEEEEEecchhHHHHHHHHHhCCCceeeecccCCcHHhh----hhcccccEE
Confidence 457999999999999888888876 357999999998776555555444443 4432210000111 122457877
Q ss_pred eecccccCCCCHHHHHHHHHHH--HhccCCeEEEEc
Q 015771 109 IASYVLGEVPSLQDRITIVRQL--WDLTRDVLVLVE 142 (400)
Q Consensus 109 ias~~L~eL~~~~~r~~~i~~L--w~~~gG~LVlVE 142 (400)
..-- ..+.+...++.|. .-+.+|+++|+=
T Consensus 150 y~DV-----AQp~Qa~I~~~Na~~FLk~~G~~~i~i 180 (231)
T COG1889 150 YQDV-----AQPNQAEILADNAEFFLKKGGYVVIAI 180 (231)
T ss_pred EEec-----CCchHHHHHHHHHHHhcccCCeEEEEE
Confidence 6543 2333433444442 223577666653
|
|
| >PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins | Back alignment and domain information |
|---|
Probab=88.09 E-value=1.5 Score=40.72 Aligned_cols=111 Identities=14% Similarity=0.044 Sum_probs=59.1
Q ss_pred EEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCCCCceeechhhhHhhhhcccCCCcccEEeeccc
Q 015771 34 VLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDISKSEREHDLVIASYV 113 (400)
Q Consensus 34 VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~~~~~~~~~~~~~l~~~l~~~~~~~DLVias~~ 113 (400)
|.|+||-.|-...++.+.- ...+++++|.++..++.|+..++.......+... +.+--..+. +.+..|.||.+-+
T Consensus 1 vaDIGtDHgyLpi~L~~~~--~~~~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~r--lgdGL~~l~-~~e~~d~ivIAGM 75 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNG--KAPKAIAVDINPGPLEKAKENIAKYGLEDRIEVR--LGDGLEVLK-PGEDVDTIVIAGM 75 (205)
T ss_dssp EEEET-STTHHHHHHHHTT--SEEEEEEEESSHHHHHHHHHHHHHTT-TTTEEEE--E-SGGGG---GGG---EEEEEEE
T ss_pred CceeccchhHHHHHHHhcC--CCCEEEEEeCCHHHHHHHHHHHHHcCCcccEEEE--ECCcccccC-CCCCCCEEEEecC
Confidence 6899999999888777532 3468999999999999999988765422222221 111001121 2223677777665
Q ss_pred ccCCCCHHHHHHHHHHHHhc-c-CCeEEEEcCCCCCchHHHHHHHHHHH
Q 015771 114 LGEVPSLQDRITIVRQLWDL-T-RDVLVLVEPGTPQGSSIISQMRSHIL 160 (400)
Q Consensus 114 L~eL~~~~~r~~~i~~Lw~~-~-gG~LVlVE~Gtp~Gf~~I~~aR~~lL 160 (400)
= ..-...++.+.... . ...||| -|-+ ....+|++|.
T Consensus 76 G-----G~lI~~ILe~~~~~~~~~~~lIL-qP~~-----~~~~LR~~L~ 113 (205)
T PF04816_consen 76 G-----GELIIEILEAGPEKLSSAKRLIL-QPNT-----HAYELRRWLY 113 (205)
T ss_dssp ------HHHHHHHHHHTGGGGTT--EEEE-EESS------HHHHHHHHH
T ss_pred C-----HHHHHHHHHhhHHHhccCCeEEE-eCCC-----ChHHHHHHHH
Confidence 2 22233444443322 2 234554 3322 2456788876
|
; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B. |
| >COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=88.00 E-value=1.2 Score=45.08 Aligned_cols=85 Identities=16% Similarity=0.156 Sum_probs=53.4
Q ss_pred HCCCCCCC-eEEEEccchhHHHHHHHHHCCC---C----------------------------------CcEEEEEeCCH
Q 015771 25 RLPGFSPA-KVLDFGAGTGSAFWALREVWPR---S----------------------------------LEKVNLVEPSQ 66 (400)
Q Consensus 25 rlp~~~p~-~VLDvG~G~Gt~~~Al~~~~~~---~----------------------------------~~~v~~vD~S~ 66 (400)
++.+|++. .++|==||+||.++.++-.-.+ . ...++|+|+++
T Consensus 185 ~lagw~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~~~G~Did~ 264 (381)
T COG0116 185 LLAGWKPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPIIYGSDIDP 264 (381)
T ss_pred HHcCCCCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccceEEEecCCH
Confidence 34567764 8999999999998765433210 0 01377999999
Q ss_pred HHHHHHHHhhcCCCCCCceeechhhhHhhhhcccCCCcccEEeecc
Q 015771 67 SMQRAGQSLMQGPKDLPLIHSYNSIQALNKDISKSEREHDLVIASY 112 (400)
Q Consensus 67 ~ml~~a~~ll~~~~~~~~~~~~~~~~~l~~~l~~~~~~~DLVias~ 112 (400)
.|++.|+..+.+.+-...+... ..++. .+....+.+|+||++-
T Consensus 265 r~i~~Ak~NA~~AGv~d~I~f~--~~d~~-~l~~~~~~~gvvI~NP 307 (381)
T COG0116 265 RHIEGAKANARAAGVGDLIEFK--QADAT-DLKEPLEEYGVVISNP 307 (381)
T ss_pred HHHHHHHHHHHhcCCCceEEEE--Ecchh-hCCCCCCcCCEEEeCC
Confidence 9999999998875422222211 11222 2322226899999863
|
|
| >PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins | Back alignment and domain information |
|---|
Probab=86.75 E-value=3 Score=40.58 Aligned_cols=49 Identities=16% Similarity=0.098 Sum_probs=41.3
Q ss_pred CCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCC
Q 015771 31 PAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK 80 (400)
Q Consensus 31 p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~ 80 (400)
..+|||+.+|||.=+..+++.+. ....+++.|.+..-+...+..+++.+
T Consensus 86 ~~~VLD~CAapGgKt~~la~~~~-~~g~i~A~D~~~~Rl~~l~~~~~r~g 134 (283)
T PF01189_consen 86 GERVLDMCAAPGGKTTHLAELMG-NKGEIVANDISPKRLKRLKENLKRLG 134 (283)
T ss_dssp TSEEEESSCTTSHHHHHHHHHTT-TTSEEEEEESSHHHHHHHHHHHHHTT
T ss_pred cccccccccCCCCceeeeeeccc-chhHHHHhccCHHHHHHHHHHHHhcC
Confidence 36899999999988888888886 36799999999998888888777654
|
In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A .... |
| >TIGR00006 S-adenosyl-methyltransferase MraW | Back alignment and domain information |
|---|
Probab=86.28 E-value=6 Score=39.04 Aligned_cols=59 Identities=10% Similarity=0.015 Sum_probs=46.1
Q ss_pred HHHHHHHCCCCCCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCC
Q 015771 19 TESFARRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGP 79 (400)
Q Consensus 19 L~el~~rlp~~~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~ 79 (400)
|+|+-..+..-.+..++|.=+|-|.-+.++++..+ . .+++++|.++.++..++..+...
T Consensus 9 l~Evl~~L~~~~ggiyVD~TlG~GGHS~~iL~~l~-~-g~vigiD~D~~Al~~ak~~L~~~ 67 (305)
T TIGR00006 9 LDEVVEGLNIKPDGIYIDCTLGFGGHSKAILEQLG-T-GRLIGIDRDPQAIAFAKERLSDF 67 (305)
T ss_pred HHHHHHhcCcCCCCEEEEeCCCChHHHHHHHHhCC-C-CEEEEEcCCHHHHHHHHHHHhhc
Confidence 45555544322346899999999998888888776 3 78999999999999999988654
|
Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn. |
| >COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=85.02 E-value=1.6 Score=41.32 Aligned_cols=119 Identities=19% Similarity=0.179 Sum_probs=64.9
Q ss_pred HhHHHHHHHHHHHHHHCCCCCCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCCCCceee--
Q 015771 10 ECLLFTLLVTESFARRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHS-- 87 (400)
Q Consensus 10 ~~Ya~~~~vL~el~~rlp~~~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~~~~~~~-- 87 (400)
..+-.+..+|++..- +++...+||+|+.||.++--+.+ .....|++||.+-.-+.- ++ + +-+.+..
T Consensus 62 RG~~KL~~ale~F~l---~~k~kv~LDiGsSTGGFTd~lLq---~gAk~VyavDVG~~Ql~~--kL-R---~d~rV~~~E 129 (245)
T COG1189 62 RGGLKLEKALEEFEL---DVKGKVVLDIGSSTGGFTDVLLQ---RGAKHVYAVDVGYGQLHW--KL-R---NDPRVIVLE 129 (245)
T ss_pred cHHHHHHHHHHhcCc---CCCCCEEEEecCCCccHHHHHHH---cCCcEEEEEEccCCccCH--hH-h---cCCcEEEEe
Confidence 344555566666542 45668999999999999876664 346799999987643221 11 1 1111111
Q ss_pred chhhhHhhhhcccCCCcccEEeecccccCCCCHHHHHHHHHHHHhccCCeEEEEcCCC
Q 015771 88 YNSIQALNKDISKSEREHDLVIASYVLGEVPSLQDRITIVRQLWDLTRDVLVLVEPGT 145 (400)
Q Consensus 88 ~~~~~~l~~~l~~~~~~~DLVias~~L~eL~~~~~r~~~i~~Lw~~~gG~LVlVE~Gt 145 (400)
..+...+... ...+..|++++--++-.|. ..+..+..+.+..+-.+.+|-|-.
T Consensus 130 ~tN~r~l~~~--~~~~~~d~~v~DvSFISL~---~iLp~l~~l~~~~~~~v~LvKPQF 182 (245)
T COG1189 130 RTNVRYLTPE--DFTEKPDLIVIDVSFISLK---LILPALLLLLKDGGDLVLLVKPQF 182 (245)
T ss_pred cCChhhCCHH--HcccCCCeEEEEeehhhHH---HHHHHHHHhcCCCceEEEEecchh
Confidence 1111112110 1123678999877655442 334445555543334566776643
|
|
| >PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D | Back alignment and domain information |
|---|
Probab=84.63 E-value=0.63 Score=37.75 Aligned_cols=97 Identities=16% Similarity=0.140 Sum_probs=29.0
Q ss_pred EEEccchhHHHHHHHHHCCCCC-cEEEEEeCCHH---HHHHHHHhhcCCCCCCceeechhhhHhhhhcccCCCcccEEee
Q 015771 35 LDFGAGTGSAFWALREVWPRSL-EKVNLVEPSQS---MQRAGQSLMQGPKDLPLIHSYNSIQALNKDISKSEREHDLVIA 110 (400)
Q Consensus 35 LDvG~G~Gt~~~Al~~~~~~~~-~~v~~vD~S~~---ml~~a~~ll~~~~~~~~~~~~~~~~~l~~~l~~~~~~~DLVia 110 (400)
|++|+..|..+..+++.+++.. .+++++|..+. ..+..++.-- ..++..+... +...+. .++ ..++|+|+.
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~~~~~~~~~~~~~~-~~~~~~~~g~-s~~~l~-~~~--~~~~dli~i 75 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPGDEQAQEIIKKAGL-SDRVEFIQGD-SPDFLP-SLP--DGPIDLIFI 75 (106)
T ss_dssp --------------------------EEEESS------------GGG--BTEEEEES--THHHHH-HHH--H--EEEEEE
T ss_pred CccccccccccccccccccccccCCEEEEECCCcccccchhhhhcCC-CCeEEEEEcC-cHHHHH-HcC--CCCEEEEEE
Confidence 6899888877666665554322 37999999994 3333332100 0122222221 111121 111 368999986
Q ss_pred cccccCCCCHHHHHHHHHHHHhc--cCCeEEE
Q 015771 111 SYVLGEVPSLQDRITIVRQLWDL--TRDVLVL 140 (400)
Q Consensus 111 s~~L~eL~~~~~r~~~i~~Lw~~--~gG~LVl 140 (400)
--. + +.+.....+..++.+ +||++|+
T Consensus 76 Dg~--H--~~~~~~~dl~~~~~~l~~ggviv~ 103 (106)
T PF13578_consen 76 DGD--H--SYEAVLRDLENALPRLAPGGVIVF 103 (106)
T ss_dssp ES-------HHHHHHHHHHHGGGEEEEEEEEE
T ss_pred CCC--C--CHHHHHHHHHHHHHHcCCCeEEEE
Confidence 431 1 134455667777765 6777665
|
|
| >COG2384 Predicted SAM-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=83.77 E-value=4.6 Score=37.86 Aligned_cols=110 Identities=13% Similarity=0.050 Sum_probs=67.9
Q ss_pred eEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCCCCceeechhhhHhhhhcc--cCCCcccEEee
Q 015771 33 KVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDIS--KSEREHDLVIA 110 (400)
Q Consensus 33 ~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~~~~~~~~~~~~~l~~~l~--~~~~~~DLVia 110 (400)
+|.|+||-.|-+...+...- ....++++|.++..++.|...+...+..+.+... ..+.++ .....+|.|+.
T Consensus 19 ~iaDIGsDHAYLp~~Lv~~~--~~~~~va~eV~~gpl~~a~~~v~~~~l~~~i~vr-----~~dgl~~l~~~d~~d~ivI 91 (226)
T COG2384 19 RIADIGSDHAYLPIYLVKNN--PASTAVAGEVVPGPLESAIRNVKKNNLSERIDVR-----LGDGLAVLELEDEIDVIVI 91 (226)
T ss_pred ceeeccCchhHhHHHHHhcC--CcceEEEeecccCHHHHHHHHHHhcCCcceEEEe-----ccCCccccCccCCcCEEEE
Confidence 49999999998877766443 3568999999999999999999876555544432 111222 13346888877
Q ss_pred cccccCCCCHHHHHHHHHHHHhccCC--eEEEEcCCCCCchHHHHHHHHHHH
Q 015771 111 SYVLGEVPSLQDRITIVRQLWDLTRD--VLVLVEPGTPQGSSIISQMRSHIL 160 (400)
Q Consensus 111 s~~L~eL~~~~~r~~~i~~Lw~~~gG--~LVlVE~Gtp~Gf~~I~~aR~~lL 160 (400)
+-+= ..--..++++.-++-.| .|||- |.+ . .-.+|+++.
T Consensus 92 AGMG-----G~lI~~ILee~~~~l~~~~rlILQ-Pn~---~--~~~LR~~L~ 132 (226)
T COG2384 92 AGMG-----GTLIREILEEGKEKLKGVERLILQ-PNI---H--TYELREWLS 132 (226)
T ss_pred eCCc-----HHHHHHHHHHhhhhhcCcceEEEC-CCC---C--HHHHHHHHH
Confidence 6642 22233455555444233 45543 322 1 346788875
|
|
| >PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes | Back alignment and domain information |
|---|
Probab=83.53 E-value=3 Score=41.00 Aligned_cols=83 Identities=10% Similarity=0.138 Sum_probs=39.6
Q ss_pred CCeEEEEccchhHH--HHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCCC-Cceeec--hhhhHhhhhcccCCCcc
Q 015771 31 PAKVLDFGAGTGSA--FWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDL-PLIHSY--NSIQALNKDISKSEREH 105 (400)
Q Consensus 31 p~~VLDvG~G~Gt~--~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~~-~~~~~~--~~~~~l~~~l~~~~~~~ 105 (400)
..++||||+|.-.. ++.+ ..++ =++++.|+++..++.|+.+++...++ ..+... ..-..+-..+....+.|
T Consensus 103 ~v~glDIGTGAscIYpLLg~-~~~~---W~fvaTdID~~sl~~A~~nv~~N~~L~~~I~l~~~~~~~~i~~~i~~~~e~~ 178 (299)
T PF05971_consen 103 KVRGLDIGTGASCIYPLLGA-KLYG---WSFVATDIDPKSLESARENVERNPNLESRIELRKQKNPDNIFDGIIQPNERF 178 (299)
T ss_dssp --EEEEES-TTTTHHHHHHH-HHH-----EEEEEES-HHHHHHHHHHHHHT-T-TTTEEEEE--ST-SSTTTSTT--S-E
T ss_pred ceEeecCCccHHHHHHHHhh-hhcC---CeEEEecCCHHHHHHHHHHHHhccccccceEEEEcCCccccchhhhccccee
Confidence 35899999997532 2222 2222 37999999999999999998754222 122111 00011111222234589
Q ss_pred cEEeecccccCC
Q 015771 106 DLVIASYVLGEV 117 (400)
Q Consensus 106 DLVias~~L~eL 117 (400)
|+.+|.-=+++-
T Consensus 179 dftmCNPPFy~s 190 (299)
T PF05971_consen 179 DFTMCNPPFYSS 190 (299)
T ss_dssp EEEEE-----SS
T ss_pred eEEecCCccccC
Confidence 999997665553
|
The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A. |
| >PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases | Back alignment and domain information |
|---|
Probab=83.29 E-value=8.1 Score=40.45 Aligned_cols=110 Identities=15% Similarity=0.136 Sum_probs=61.1
Q ss_pred CeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCCCCceeechhhhHhhhhcccCCCcccEEeec
Q 015771 32 AKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDISKSEREHDLVIAS 111 (400)
Q Consensus 32 ~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~~~~~~~~~~~~~l~~~l~~~~~~~DLVias 111 (400)
..|||..+|.|.++-|+.+ ...-|.-|-++... +...-++.+ +-+...| ++.+.++.-..+||||-+.
T Consensus 367 RNVMDMnAg~GGFAAAL~~----~~VWVMNVVP~~~~-ntL~vIydR-GLIG~yh------DWCE~fsTYPRTYDLlHA~ 434 (506)
T PF03141_consen 367 RNVMDMNAGYGGFAAALID----DPVWVMNVVPVSGP-NTLPVIYDR-GLIGVYH------DWCEAFSTYPRTYDLLHAD 434 (506)
T ss_pred eeeeeecccccHHHHHhcc----CCceEEEecccCCC-Ccchhhhhc-ccchhcc------chhhccCCCCcchhheehh
Confidence 6899999999999887763 22222222222110 000111111 1112122 2344444345799999999
Q ss_pred ccccCCCCHHH---HHHHHHHHHhccCCeEEEEcCCCCCchHHHHHHHHHH
Q 015771 112 YVLGEVPSLQD---RITIVRQLWDLTRDVLVLVEPGTPQGSSIISQMRSHI 159 (400)
Q Consensus 112 ~~L~eL~~~~~---r~~~i~~Lw~~~gG~LVlVE~Gtp~Gf~~I~~aR~~l 159 (400)
++|+...+.-+ .+--++++++ |+|.+||=+ ....|..++..+
T Consensus 435 ~lfs~~~~rC~~~~illEmDRILR-P~G~~iiRD-----~~~vl~~v~~i~ 479 (506)
T PF03141_consen 435 GLFSLYKDRCEMEDILLEMDRILR-PGGWVIIRD-----TVDVLEKVKKIA 479 (506)
T ss_pred hhhhhhcccccHHHHHHHhHhhcC-CCceEEEec-----cHHHHHHHHHHH
Confidence 99987754322 2233445553 899988754 367788888754
|
; GO: 0008168 methyltransferase activity |
| >PRK10742 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=82.94 E-value=4.5 Score=38.70 Aligned_cols=42 Identities=19% Similarity=0.197 Sum_probs=34.4
Q ss_pred eEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcC
Q 015771 33 KVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQG 78 (400)
Q Consensus 33 ~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~ 78 (400)
+|||.=+|.|.-.+.++. ...+|++||.|+.+..+.+..++.
T Consensus 91 ~VLD~TAGlG~Da~~las----~G~~V~~vEr~p~vaalL~dgL~r 132 (250)
T PRK10742 91 DVVDATAGLGRDAFVLAS----VGCRVRMLERNPVVAALLDDGLAR 132 (250)
T ss_pred EEEECCCCccHHHHHHHH----cCCEEEEEECCHHHHHHHHHHHHH
Confidence 899999999998887774 345699999999988777766654
|
|
| >COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=81.81 E-value=7.9 Score=38.02 Aligned_cols=69 Identities=14% Similarity=0.171 Sum_probs=51.8
Q ss_pred HHHHHHHHCCCCCCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCC-CCCceee
Q 015771 18 VTESFARRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK-DLPLIHS 87 (400)
Q Consensus 18 vL~el~~rlp~~~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~-~~~~~~~ 87 (400)
.|+|+..-+..-.....+|.=-|-|.-+-++.+.++ ...+++++|.++.+++.|+.++.... .+.+++.
T Consensus 11 Ll~E~i~~L~~~~~giyiD~TlG~GGHS~~iL~~l~-~~~~li~~DrD~~Ai~~a~~~l~~~~~r~~~v~~ 80 (314)
T COG0275 11 LLNEVVELLAPKPDGIYIDGTLGAGGHSRAILEKLP-DLGRLIGIDRDPQAIAIAKERLKEFDGRVTLVHG 80 (314)
T ss_pred HHHHHHHhcccCCCcEEEEecCCCcHhHHHHHHhCC-CCCeEEEEcCCHHHHHHHHHHhhccCCcEEEEeC
Confidence 456666655322236899998898888889888886 46789999999999999999987643 3444554
|
|
| >PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=80.78 E-value=19 Score=38.12 Aligned_cols=43 Identities=28% Similarity=0.313 Sum_probs=35.2
Q ss_pred CCCeEEEEccch-hHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHh
Q 015771 30 SPAKVLDFGAGT-GSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSL 75 (400)
Q Consensus 30 ~p~~VLDvG~G~-Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~l 75 (400)
.|.+||=+|+|+ |..+.+++..++ .+|+++|.+++-++.++.+
T Consensus 164 pg~kVlViGaG~iGL~Ai~~Ak~lG---A~V~a~D~~~~rle~aesl 207 (509)
T PRK09424 164 PPAKVLVIGAGVAGLAAIGAAGSLG---AIVRAFDTRPEVAEQVESM 207 (509)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCC---CEEEEEeCCHHHHHHHHHc
Confidence 478999999997 556666777775 3799999999999998884
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 54.9 bits (131), Expect = 3e-08
Identities = 58/444 (13%), Positives = 122/444 (27%), Gaps = 134/444 (30%)
Query: 45 FWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKD------- 97
FW L + + +Q+ + +++ + + + I+ +
Sbjct: 68 FWTLLS------------KQEEMVQKFVEEVLR--INYKFL--MSPIKTEQRQPSMMTRM 111
Query: 98 -ISKSEREHDLVIASYVLGEVPSLQDRITIVRQLWDLTRDVLVLVE--PGTPQGSS---- 150
I + +R ++ + V LQ + + + L +L VL++ G+ G +
Sbjct: 112 YIEQRDRLYN-DNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGS--GKTWVAL 168
Query: 151 -------IISQMRSHILWMEKRKSRKYEARKSKDTNKETSKDLVTLRSGVHIVAPCPHEG 203
+ +M I W+ + E L L+ ++ + P
Sbjct: 169 DVCLSYKVQCKMDFKIFWLNLKNCNSPET------------VLEMLQKLLYQIDPNWTSR 216
Query: 204 RCPLENSGKYCHFVQ-RLQRTTSQRAYKRS--------KSEPLRGF-------------- 240
N H +Q L+R + Y+ ++ F
Sbjct: 217 SDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQ 276
Query: 241 --------EDEKFSFVAFRRGERPRE------RWPLDGMKFDTLKEQHAKRNPEDLEIDY 286
S P E ++ L + L + NP L I
Sbjct: 277 VTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKY-L-DCRPQDLPREVLTTNPRRLSI-- 332
Query: 287 EDLLRLQAEAEVEPCKKEDLVNYESDEVQDDTVDSDKDQEKGEEE--------------T 332
+ ++ + D++ ++S + + E
Sbjct: 333 -----IAESIRDGLATWDNWKHVNCDKL-TTIIESSLNVLEPAEYRKMFDRLSVFPPSAH 386
Query: 333 IPAD-LGGGWGRIIFSPVRRGRQVAMDVCRS---IKRDGSEGSFQ-HLVF-----TRSKN 382
IP L W +I S V V ++ +++ E + ++
Sbjct: 387 IPTILLSLIWFDVIKSDV----MVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENE 442
Query: 383 PTLHR-------LAKKSLWGDLWP 399
LHR + K DL P
Sbjct: 443 YALHRSIVDHYNIPKTFDSDDLIP 466
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 43.7 bits (102), Expect = 1e-04
Identities = 59/374 (15%), Positives = 113/374 (30%), Gaps = 118/374 (31%)
Query: 9 LECLLFTLLVTESFARRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLV-EPSQS 67
L C +L+T F +V DF + SL+ ++ P +
Sbjct: 264 LSC---KILLTTRFK---------QVTDFLSAA--------TTTHISLDHHSMTLTPDEV 303
Query: 68 MQRAGQSLMQGPKDLPLIHSYNSIQALNKDISKSEREHDLVIASYVLGEVPSLQDRITIV 127
+ L P+DLP + L + ++ ++ E S++D +
Sbjct: 304 KSLLLKYLDCRPQDLPR-------EVL--------TTNPRRLS--IIAE--SIRDGLA-- 342
Query: 128 RQLWDLTRDV------------LVLVEPGT-----------PQGSSIISQMRSHILWMEK 164
WD + V L ++EP P + I + + S ++W +
Sbjct: 343 --TWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLS-LIWFD- 398
Query: 165 RKSRKYEARKSKDTNKETS---KDLVTLRSGVHIVAPCPHEGRCPLENSGKYCHFVQRL- 220
K + + + S K + + E + LEN H + +
Sbjct: 399 --VIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIY---LELKVKLENE-YALH--RSIV 450
Query: 221 QRTTSQRAYKRSKSEP--------------LRGFE-DEKFS-----FVAFR----RGERP 256
+ + P L+ E E+ + F+ FR +
Sbjct: 451 DHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHD 510
Query: 257 RERWPLDGMKFDTLK-----EQHAKRN---PEDLEIDYEDLLRLQAEAEVEPCKKEDLV- 307
W G +TL+ + + N E L D L + E + K DL+
Sbjct: 511 STAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLP-KIEENLICSKYTDLLR 569
Query: 308 ---NYESDEVQDDT 318
E + + ++
Sbjct: 570 IALMAEDEAIFEEA 583
|
| >2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A* Length = 292 | Back alignment and structure |
|---|
Score = 46.6 bits (110), Expect = 6e-06
Identities = 23/142 (16%), Positives = 47/142 (33%), Gaps = 14/142 (9%)
Query: 18 VTESFARRLPGFSPAKVLDFGAGTGSAFW----ALREVWPRSLEKVNLVEPSQSMQRAGQ 73
+ R S K+L G G G ++ +P +VEPS +
Sbjct: 40 LPGIIGRIGDTKSEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYK 99
Query: 74 SLMQGPKDLPLI----HSYNSIQALNKDISKSEREH-DLVIASYVLGEVPSLQDRITIVR 128
L+ +L + H S + ++ + K E + D + +L V + ++
Sbjct: 100 ELVAKTSNLENVKFAWHKETSSEYQSRMLEKKELQKWDFIHMIQMLYYVKDIPA---TLK 156
Query: 129 QLWDLTRD--VLVLVEPGTPQG 148
L ++++ G
Sbjct: 157 FFHSLLGTNAKMLIIVVSGSSG 178
|
| >3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei} Length = 234 | Back alignment and structure |
|---|
Score = 42.8 bits (101), Expect = 6e-05
Identities = 20/130 (15%), Positives = 56/130 (43%), Gaps = 12/130 (9%)
Query: 31 PAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNS 90
+LD GAGTG L E +P + LV+ S+ M ++ +G + I +
Sbjct: 45 NPDILDLGAGTGLLSAFLMEKYPEA--TFTLVDMSEKMLEIAKNRFRGNLKVKYIEA--D 100
Query: 91 IQALNKDISKSEREHDLVIASYVLGEVPSLQDRITIVRQLWDLTRD--VLVLVEPGTPQG 148
+ + +D+V+++ + + +D+ + ++ + + ++ + + + +
Sbjct: 101 YSKYDFEEK-----YDMVVSALSIHHLED-EDKKELYKRSYSILKESGIFINADLVHGET 154
Query: 149 SSIISQMRSH 158
+ I + ++
Sbjct: 155 AFIENLNKTI 164
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 400 | |||
| 4gek_A | 261 | TRNA (CMO5U34)-methyltransferase; structural genom | 99.59 | |
| 2aot_A | 292 | HMT, histamine N-methyltransferase; classic methyl | 99.27 | |
| 3dtn_A | 234 | Putative methyltransferase MM_2633; structural gen | 99.26 | |
| 1vl5_A | 260 | Unknown conserved protein BH2331; putative methylt | 99.25 | |
| 3ofk_A | 216 | Nodulation protein S; NODS, N-methyltransferase, S | 99.25 | |
| 3ujc_A | 266 | Phosphoethanolamine N-methyltransferase; parasite; | 99.22 | |
| 3hnr_A | 220 | Probable methyltransferase BT9727_4108; structural | 99.22 | |
| 4hg2_A | 257 | Methyltransferase type 11; structural genomics, PS | 99.22 | |
| 1xtp_A | 254 | LMAJ004091AAA; SGPP, structural genomics, PSI, pro | 99.2 | |
| 3g5l_A | 253 | Putative S-adenosylmethionine dependent methyltran | 99.18 | |
| 3jwh_A | 217 | HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena | 99.18 | |
| 3bus_A | 273 | REBM, methyltransferase; rebeccamycin synthesis; H | 99.18 | |
| 4htf_A | 285 | S-adenosylmethionine-dependent methyltransferase; | 99.18 | |
| 1pjz_A | 203 | Thiopurine S-methyltransferase; polymorphism, S-ad | 99.17 | |
| 3ou2_A | 218 | SAM-dependent methyltransferase; O-methyltransfera | 99.17 | |
| 3pfg_A | 263 | N-methyltransferase; N,N-dimethyltransferase, SAM | 99.17 | |
| 3sm3_A | 235 | SAM-dependent methyltransferases; NESG, structural | 99.16 | |
| 2p7i_A | 250 | Hypothetical protein; putative methyltransferase, | 99.16 | |
| 2p35_A | 259 | Trans-aconitate 2-methyltransferase; SAM dependent | 99.16 | |
| 2o57_A | 297 | Putative sarcosine dimethylglycine methyltransfera | 99.15 | |
| 3hem_A | 302 | Cyclopropane-fatty-acyl-phospholipid synthase 2; p | 99.15 | |
| 3jwg_A | 219 | HEN1, methyltransferase type 12; 1.90A {Clostridiu | 99.14 | |
| 1nkv_A | 256 | Hypothetical protein YJHP; structural genomics, PS | 99.14 | |
| 3ccf_A | 279 | Cyclopropane-fatty-acyl-phospholipid synthase; YP_ | 99.14 | |
| 3dlc_A | 219 | Putative S-adenosyl-L-methionine-dependent methylt | 99.14 | |
| 2xvm_A | 199 | Tellurite resistance protein TEHB; antibiotic resi | 99.13 | |
| 3l8d_A | 242 | Methyltransferase; structural genomics, PSI, nysgr | 99.13 | |
| 1kpg_A | 287 | CFA synthase;, cyclopropane-fatty-acyl-phospholipi | 99.13 | |
| 3g5t_A | 299 | Trans-aconitate 3-methyltransferase; structural ge | 99.13 | |
| 1xxl_A | 239 | YCGJ protein; structural genomics, protein structu | 99.13 | |
| 3gu3_A | 284 | Methyltransferase; alpha-beta protein, structural | 99.12 | |
| 3ege_A | 261 | Putative methyltransferase from antibiotic biosyn | 99.12 | |
| 3dh0_A | 219 | SAM dependent methyltransferase; cystal structure, | 99.12 | |
| 2ex4_A | 241 | Adrenal gland protein AD-003; methyltransferase, s | 99.12 | |
| 2gs9_A | 211 | Hypothetical protein TT1324; methyl transferase, s | 99.11 | |
| 2yqz_A | 263 | Hypothetical protein TTHA0223; RNA methyltransfera | 99.11 | |
| 3bkw_A | 243 | MLL3908 protein, S-adenosylmethionine dependent me | 99.11 | |
| 3bxo_A | 239 | N,N-dimethyltransferase; desosamine, sugar, carboh | 99.11 | |
| 3vc1_A | 312 | Geranyl diphosphate 2-C-methyltransferase; rossman | 99.1 | |
| 3ggd_A | 245 | SAM-dependent methyltransferase; YP_325210.1, stru | 99.1 | |
| 3h2b_A | 203 | SAM-dependent methyltransferase; alpha-beta protei | 99.1 | |
| 3e8s_A | 227 | Putative SAM dependent methyltransferase; NP_74470 | 99.1 | |
| 3iv6_A | 261 | Putative Zn-dependent alcohol dehydrogenase; alpha | 99.1 | |
| 2qe6_A | 274 | Uncharacterized protein TFU_2867; putative methylt | 99.09 | |
| 2fk8_A | 318 | Methoxy mycolic acid synthase 4; S-adenosylmethion | 99.09 | |
| 3mgg_A | 276 | Methyltransferase; NYSGXRC, PSI-II, protein struct | 99.09 | |
| 3f4k_A | 257 | Putative methyltransferase; structural genomics, P | 99.08 | |
| 3dli_A | 240 | Methyltransferase; PSI-II, NYSGXRC, structural gen | 99.08 | |
| 3e23_A | 211 | Uncharacterized protein RPA2492; alpha-beta protei | 99.08 | |
| 1y8c_A | 246 | S-adenosylmethionine-dependent methyltransferase; | 99.07 | |
| 3hm2_A | 178 | Precorrin-6Y C5,15-methyltransferase; alpha-beta-s | 99.07 | |
| 3lcc_A | 235 | Putative methyl chloride transferase; halide methy | 99.07 | |
| 3bkx_A | 275 | SAM-dependent methyltransferase; YP_807781.1, cycl | 99.07 | |
| 3i9f_A | 170 | Putative type 11 methyltransferase; structural gen | 99.06 | |
| 1ve3_A | 227 | Hypothetical protein PH0226; dimer, riken structur | 99.05 | |
| 2a14_A | 263 | Indolethylamine N-methyltransferase; SGC,INMT, str | 99.05 | |
| 2gb4_A | 252 | Thiopurine S-methyltransferase; 18204406, thiopuri | 99.03 | |
| 3kkz_A | 267 | Uncharacterized protein Q5LES9; putative methyltra | 99.03 | |
| 3thr_A | 293 | Glycine N-methyltransferase; GNMT, folate, methylt | 99.02 | |
| 3m70_A | 286 | Tellurite resistance protein TEHB homolog; structu | 99.02 | |
| 2pxx_A | 215 | Uncharacterized protein MGC2408; structural genomi | 99.02 | |
| 3g07_A | 292 | 7SK snRNA methylphosphate capping enzyme; structur | 99.01 | |
| 2p8j_A | 209 | S-adenosylmethionine-dependent methyltransferase; | 99.01 | |
| 4fsd_A | 383 | Arsenic methyltransferase; rossmann fold; 1.75A {C | 99.01 | |
| 3mti_A | 185 | RRNA methylase; SAM-dependent, PSI, MCSG, structur | 99.0 | |
| 3bgv_A | 313 | MRNA CAP guanine-N7 methyltransferase; alternative | 99.0 | |
| 4e2x_A | 416 | TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s | 98.98 | |
| 1vlm_A | 219 | SAM-dependent methyltransferase; possible histamin | 98.98 | |
| 1wzn_A | 252 | SAM-dependent methyltransferase; structural genomi | 98.97 | |
| 2yxd_A | 183 | Probable cobalt-precorrin-6Y C(15)-methyltransfer | 98.97 | |
| 2i62_A | 265 | Nicotinamide N-methyltransferase; structural genom | 98.96 | |
| 3g2m_A | 299 | PCZA361.24; SAM-dependent methyltransferase, glyco | 98.96 | |
| 3mcz_A | 352 | O-methyltransferase; adomet_mtases, S-adenosylmeth | 98.96 | |
| 2vdw_A | 302 | Vaccinia virus capping enzyme D1 subunit; nucleoti | 98.94 | |
| 3ocj_A | 305 | Putative exported protein; structural genomics, PS | 98.94 | |
| 3eey_A | 197 | Putative rRNA methylase; rRNA methylation, S-adeno | 98.94 | |
| 3gwz_A | 369 | MMCR; methyltransferase, mitomycin, S-adenosyl met | 98.94 | |
| 3i53_A | 332 | O-methyltransferase; CO-complex, rossmann-like fol | 98.94 | |
| 2avn_A | 260 | Ubiquinone/menaquinone biosynthesis methyltransfe | 98.93 | |
| 3dp7_A | 363 | SAM-dependent methyltransferase; structural genomi | 98.92 | |
| 1vbf_A | 231 | 231AA long hypothetical protein-L-isoaspartate O- | 98.92 | |
| 3d2l_A | 243 | SAM-dependent methyltransferase; ZP_00538691.1, st | 98.91 | |
| 3cc8_A | 230 | Putative methyltransferase; structural genomics, j | 98.9 | |
| 1ri5_A | 298 | MRNA capping enzyme; methyltransferase, M7G, messe | 98.9 | |
| 1zx0_A | 236 | Guanidinoacetate N-methyltransferase; structural g | 98.89 | |
| 3e05_A | 204 | Precorrin-6Y C5,15-methyltransferase (decarboxyla; | 98.89 | |
| 1dus_A | 194 | MJ0882; hypothetical protein, methanococcus jannas | 98.88 | |
| 3p9n_A | 189 | Possible methyltransferase (methylase); RV2966C, a | 98.88 | |
| 1x19_A | 359 | CRTF-related protein; methyltransferase, bacterioc | 98.88 | |
| 2r3s_A | 335 | Uncharacterized protein; methyltransferase domain, | 98.87 | |
| 3u81_A | 221 | Catechol O-methyltransferase; neurotransmitter deg | 98.86 | |
| 4dzr_A | 215 | Protein-(glutamine-N5) methyltransferase, release | 98.86 | |
| 2kw5_A | 202 | SLR1183 protein; structural genomics, northeast st | 98.86 | |
| 3orh_A | 236 | Guanidinoacetate N-methyltransferase; structura ge | 98.85 | |
| 3fzg_A | 200 | 16S rRNA methylase; methyltransferase, plasmid, tr | 98.85 | |
| 2g72_A | 289 | Phenylethanolamine N-methyltransferase; HET: SAM F | 98.85 | |
| 1nt2_A | 210 | Fibrillarin-like PRE-rRNA processing protein; adeM | 98.85 | |
| 3lbf_A | 210 | Protein-L-isoaspartate O-methyltransferase; modifi | 98.84 | |
| 3cgg_A | 195 | SAM-dependent methyltransferase; NP_600671.1, meth | 98.84 | |
| 1fbn_A | 230 | MJ fibrillarin homologue; MJ proteins, ribosomal R | 98.83 | |
| 3q87_B | 170 | N6 adenine specific DNA methylase; SAM-methyltrans | 98.83 | |
| 3giw_A | 277 | Protein of unknown function DUF574; rossmann-fold | 98.82 | |
| 1qzz_A | 374 | RDMB, aclacinomycin-10-hydroxylase; anthracycline, | 98.82 | |
| 1l3i_A | 192 | Precorrin-6Y methyltransferase/putative decarboxyl | 98.82 | |
| 2esr_A | 177 | Methyltransferase; structural genomics, hypothetic | 98.81 | |
| 1o9g_A | 250 | RRNA methyltransferase; antibiotic resistance, Se- | 98.81 | |
| 3dr5_A | 221 | Putative O-methyltransferase; Q8NRD3, CGL1119, PF0 | 98.81 | |
| 3uwp_A | 438 | Histone-lysine N-methyltransferase, H3 lysine-79; | 98.81 | |
| 3grz_A | 205 | L11 mtase, ribosomal protein L11 methyltransferase | 98.8 | |
| 1p91_A | 269 | Ribosomal RNA large subunit methyltransferase A; R | 98.8 | |
| 2yxe_A | 215 | Protein-L-isoaspartate O-methyltransferase; rossma | 98.8 | |
| 3htx_A | 950 | HEN1; HEN1, small RNA methyltransferase, protein-R | 98.8 | |
| 3njr_A | 204 | Precorrin-6Y methylase; methyltransferase, decarbo | 98.78 | |
| 2ip2_A | 334 | Probable phenazine-specific methyltransferase; pyo | 98.77 | |
| 4df3_A | 233 | Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; | 98.77 | |
| 3fpf_A | 298 | Mtnas, putative uncharacterized protein; thermonic | 98.76 | |
| 3bzb_A | 281 | Uncharacterized protein; RED ALGA, protein structu | 98.76 | |
| 1tw3_A | 360 | COMT, carminomycin 4-O-methyltransferase; anthracy | 98.75 | |
| 1ej0_A | 180 | FTSJ; methyltransferase, adoMet, adenosyl methioni | 98.75 | |
| 3tfw_A | 248 | Putative O-methyltransferase; PSI-biology, nysgrc, | 98.75 | |
| 1af7_A | 274 | Chemotaxis receptor methyltransferase CHER; chemot | 98.75 | |
| 1u2z_A | 433 | Histone-lysine N-methyltransferase, H3 lysine-79 s | 98.74 | |
| 3evz_A | 230 | Methyltransferase; NYSGXRC, NEW YORK SGX research | 98.74 | |
| 4azs_A | 569 | Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15 | 98.73 | |
| 3lst_A | 348 | CALO1 methyltransferase; calicheamicin, enediyne, | 98.73 | |
| 1dl5_A | 317 | Protein-L-isoaspartate O-methyltransferase; isoasp | 98.73 | |
| 3mb5_A | 255 | SAM-dependent methyltransferase; RNA methyltransfe | 98.71 | |
| 1ws6_A | 171 | Methyltransferase; structural genomics, riken stru | 98.71 | |
| 3p9c_A | 364 | Caffeic acid O-methyltransferase; S-adenosylmethio | 98.71 | |
| 2fca_A | 213 | TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bac | 98.7 | |
| 3tr6_A | 225 | O-methyltransferase; cellular processes; HET: SAH; | 98.7 | |
| 1ne2_A | 200 | Hypothetical protein TA1320; structural genomics, | 98.7 | |
| 4dcm_A | 375 | Ribosomal RNA large subunit methyltransferase G; 2 | 98.7 | |
| 3r0q_C | 376 | Probable protein arginine N-methyltransferase 4.2; | 98.69 | |
| 1fp1_D | 372 | Isoliquiritigenin 2'-O-methyltransferase; protein- | 98.69 | |
| 3reo_A | 368 | (ISO)eugenol O-methyltransferase; directed evoluti | 98.69 | |
| 3dmg_A | 381 | Probable ribosomal RNA small subunit methyltransf; | 98.68 | |
| 2fpo_A | 202 | Methylase YHHF; structural genomics, putative meth | 98.68 | |
| 2pwy_A | 258 | TRNA (adenine-N(1)-)-methyltransferase; mtase, ado | 98.67 | |
| 1sui_A | 247 | Caffeoyl-COA O-methyltransferase; rossmann fold, p | 98.67 | |
| 2gpy_A | 233 | O-methyltransferase; structural genomics, PSI, pro | 98.67 | |
| 1g8a_A | 227 | Fibrillarin-like PRE-rRNA processing protein; rRNA | 98.67 | |
| 3dxy_A | 218 | TRNA (guanine-N(7)-)-methyltransferase; rossmann f | 98.67 | |
| 3ntv_A | 232 | MW1564 protein; rossmann fold, putative methyltran | 98.66 | |
| 3duw_A | 223 | OMT, O-methyltransferase, putative; alternating of | 98.66 | |
| 1yzh_A | 214 | TRNA (guanine-N(7)-)-methyltransferase; alpha-beta | 98.66 | |
| 2b3t_A | 276 | Protein methyltransferase HEMK; translation termin | 98.65 | |
| 1xdz_A | 240 | Methyltransferase GIDB; MCSG, protein structure in | 98.65 | |
| 1i9g_A | 280 | Hypothetical protein RV2118C; mtase, adoMet, cryst | 98.65 | |
| 2fhp_A | 187 | Methylase, putative; alpha-beta-alpha sandwich, st | 98.65 | |
| 2ift_A | 201 | Putative methylase HI0767; NESG, Y767_haein, struc | 98.65 | |
| 1jg1_A | 235 | PIMT;, protein-L-isoaspartate O-methyltransferase; | 98.64 | |
| 3c3p_A | 210 | Methyltransferase; NP_951602.1, structural genomic | 98.64 | |
| 3g89_A | 249 | Ribosomal RNA small subunit methyltransferase G; 1 | 98.63 | |
| 1i1n_A | 226 | Protein-L-isoaspartate O-methyltransferase; S-aden | 98.63 | |
| 3ckk_A | 235 | TRNA (guanine-N(7)-)-methyltransferase; mettl1, S- | 98.62 | |
| 2fyt_A | 340 | Protein arginine N-methyltransferase 3; structural | 98.62 | |
| 3m33_A | 226 | Uncharacterized protein; structural genomics, PSI- | 98.62 | |
| 4a6d_A | 353 | Hydroxyindole O-methyltransferase; melatonin, circ | 98.62 | |
| 2pjd_A | 343 | Ribosomal RNA small subunit methyltransferase C; g | 98.62 | |
| 3q7e_A | 349 | Protein arginine N-methyltransferase 1; HET: SAH; | 98.62 | |
| 1fp2_A | 352 | Isoflavone O-methyltransferase; protein-product co | 98.62 | |
| 1yb2_A | 275 | Hypothetical protein TA0852; structural genomics, | 98.61 | |
| 3bwc_A | 304 | Spermidine synthase; SAM, SGPP, structura genomics | 98.6 | |
| 1o54_A | 277 | SAM-dependent O-methyltransferase; TM0748, structu | 98.59 | |
| 3r3h_A | 242 | O-methyltransferase, SAM-dependent; structural gen | 98.58 | |
| 3c3y_A | 237 | Pfomt, O-methyltransferase; plant secondary metabo | 98.58 | |
| 2ipx_A | 233 | RRNA 2'-O-methyltransferase fibrillarin; FBL, stru | 98.58 | |
| 2nxc_A | 254 | L11 mtase, ribosomal protein L11 methyltransferase | 98.58 | |
| 3adn_A | 294 | Spermidine synthase; aminopropyltransferase, polya | 98.57 | |
| 2y1w_A | 348 | Histone-arginine methyltransferase CARM1; histone | 98.56 | |
| 3lpm_A | 259 | Putative methyltransferase; structural genomics, p | 98.55 | |
| 2hnk_A | 239 | SAM-dependent O-methyltransferase; modified rossma | 98.55 | |
| 1g6q_1 | 328 | HnRNP arginine N-methyltransferase; SAM-binding do | 98.54 | |
| 1zg3_A | 358 | Isoflavanone 4'-O-methyltransferase; rossman fold, | 98.54 | |
| 2ozv_A | 260 | Hypothetical protein ATU0636; structural genomics, | 98.53 | |
| 3gdh_A | 241 | Trimethylguanosine synthase homolog; M7G, CAP, dim | 98.52 | |
| 2zfu_A | 215 | Nucleomethylin, cerebral protein 1; nucleolar prot | 98.52 | |
| 2pt6_A | 321 | Spermidine synthase; transferase, structural genom | 98.52 | |
| 1jsx_A | 207 | Glucose-inhibited division protein B; methyltransf | 98.52 | |
| 1inl_A | 296 | Spermidine synthase; beta-barrel, rossman fold, st | 98.52 | |
| 2o07_A | 304 | Spermidine synthase; structural genomics, structur | 98.51 | |
| 4hc4_A | 376 | Protein arginine N-methyltransferase 6; HRMT1L6, S | 98.51 | |
| 2avd_A | 229 | Catechol-O-methyltransferase; structural genomics, | 98.51 | |
| 1r18_A | 227 | Protein-L-isoaspartate(D-aspartate)-O-methyltrans; | 98.51 | |
| 2b2c_A | 314 | Spermidine synthase; beta-alpha, transferase; 2.50 | 98.51 | |
| 2i7c_A | 283 | Spermidine synthase; transferase, structural genom | 98.5 | |
| 3cbg_A | 232 | O-methyltransferase; cyanobacterium; HET: SAH FER | 98.5 | |
| 3gjy_A | 317 | Spermidine synthase; APC62791, structural genomics | 98.5 | |
| 3id6_C | 232 | Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; | 98.5 | |
| 2pbf_A | 227 | Protein-L-isoaspartate O-methyltransferase beta-A | 98.49 | |
| 2yvl_A | 248 | TRMI protein, hypothetical protein; tRNA, methyltr | 98.49 | |
| 2nyu_A | 196 | Putative ribosomal RNA methyltransferase 2; SAM, s | 98.48 | |
| 1wy7_A | 207 | Hypothetical protein PH1948; seven-stranded beta s | 98.48 | |
| 2vdv_E | 246 | TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl | 98.47 | |
| 2b25_A | 336 | Hypothetical protein; structural genomics, methyl | 98.47 | |
| 1uir_A | 314 | Polyamine aminopropyltransferase; spermidien synth | 98.46 | |
| 1iy9_A | 275 | Spermidine synthase; rossmann fold, structural gen | 98.45 | |
| 3hp7_A | 291 | Hemolysin, putative; structural genomics, APC64019 | 98.45 | |
| 1nv8_A | 284 | HEMK protein; class I adoMet-dependent methyltrans | 98.44 | |
| 2plw_A | 201 | Ribosomal RNA methyltransferase, putative; malaria | 98.43 | |
| 1mjf_A | 281 | Spermidine synthase; spermidine synthetase, struct | 98.43 | |
| 3frh_A | 253 | 16S rRNA methylase; methyltransferase domain, heli | 98.42 | |
| 3b3j_A | 480 | Histone-arginine methyltransferase CARM1; protein | 98.41 | |
| 3tma_A | 354 | Methyltransferase; thump domain; 2.05A {Thermus th | 98.39 | |
| 1xj5_A | 334 | Spermidine synthase 1; structural genomics, protei | 98.38 | |
| 3lcv_B | 281 | Sisomicin-gentamicin resistance methylase SGM; ant | 98.36 | |
| 2frn_A | 278 | Hypothetical protein PH0793; structural genomics, | 98.35 | |
| 1ixk_A | 315 | Methyltransferase; open beta sheet; 1.90A {Pyrococ | 98.35 | |
| 3kr9_A | 225 | SAM-dependent methyltransferase; class I rossmann- | 98.34 | |
| 2f8l_A | 344 | Hypothetical protein LMO1582; structural genomics, | 98.34 | |
| 2bm8_A | 236 | Cephalosporin hydroxylase CMCI; cephamycin biosynt | 98.32 | |
| 3opn_A | 232 | Putative hemolysin; structural genomics, PSI-2, pr | 98.3 | |
| 3ajd_A | 274 | Putative methyltransferase MJ0026; tRNA, M5C, ross | 98.29 | |
| 3lec_A | 230 | NADB-rossmann superfamily protein; PSI, MCSG, stru | 98.29 | |
| 3mq2_A | 218 | 16S rRNA methyltransferase; methyltranferase, ribo | 98.28 | |
| 3p2e_A | 225 | 16S rRNA methylase; methyltransferase, transferase | 98.28 | |
| 3gnl_A | 244 | Uncharacterized protein, DUF633, LMOF2365_1472; st | 98.25 | |
| 2ld4_A | 176 | Anamorsin; methyltransferase-like fold, alpha/beta | 98.25 | |
| 2wa2_A | 276 | Non-structural protein 5; transferase, S-adenosyl- | 98.24 | |
| 2igt_A | 332 | SAM dependent methyltransferase; alpha-beta sandwi | 98.23 | |
| 2oxt_A | 265 | Nucleoside-2'-O-methyltransferase; flavivirus, vir | 98.22 | |
| 3a27_A | 272 | TYW2, uncharacterized protein MJ1557; wybutosine m | 98.19 | |
| 2qm3_A | 373 | Predicted methyltransferase; putative methyltransf | 98.18 | |
| 2ih2_A | 421 | Modification methylase TAQI; DNA, DNA methyltransf | 98.17 | |
| 2cmg_A | 262 | Spermidine synthase; transferase, putrescine amino | 98.16 | |
| 2b78_A | 385 | Hypothetical protein SMU.776; structure genomics, | 98.15 | |
| 4dmg_A | 393 | Putative uncharacterized protein TTHA1493; rRNA, m | 98.14 | |
| 2yxl_A | 450 | PH0851 protein, 450AA long hypothetical FMU protei | 98.12 | |
| 3gru_A | 295 | Dimethyladenosine transferase; rossman fold, ribos | 98.11 | |
| 2h00_A | 254 | Methyltransferase 10 domain containing protein; st | 98.11 | |
| 3tm4_A | 373 | TRNA (guanine N2-)-methyltransferase TRM14; rossma | 98.11 | |
| 3sso_A | 419 | Methyltransferase; macrolide, natural product, ros | 98.1 | |
| 1uwv_A | 433 | 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA m | 98.07 | |
| 3m6w_A | 464 | RRNA methylase; rRNA methyltransferase, 5-methylcy | 98.06 | |
| 2as0_A | 396 | Hypothetical protein PH1915; RNA methyltransferase | 98.05 | |
| 1zq9_A | 285 | Probable dimethyladenosine transferase; SGC, struc | 98.05 | |
| 3tqs_A | 255 | Ribosomal RNA small subunit methyltransferase A; p | 98.04 | |
| 1wxx_A | 382 | TT1595, hypothetical protein TTHA1280; thermus the | 98.04 | |
| 1sqg_A | 429 | SUN protein, FMU protein; rossmann-fold, mixed bet | 98.02 | |
| 3m4x_A | 456 | NOL1/NOP2/SUN family protein; mtase domain, PUA do | 98.01 | |
| 2h1r_A | 299 | Dimethyladenosine transferase, putative; SGC toron | 97.99 | |
| 2frx_A | 479 | Hypothetical protein YEBU; rossmann-type S-adenosy | 97.99 | |
| 2p41_A | 305 | Type II methyltransferase; vizier, viral enzymes i | 97.97 | |
| 3c0k_A | 396 | UPF0064 protein YCCW; PUA domain, adoMet dependent | 97.97 | |
| 3dou_A | 191 | Ribosomal RNA large subunit methyltransferase J; c | 97.97 | |
| 3v97_A | 703 | Ribosomal RNA large subunit methyltransferase L; Y | 97.96 | |
| 1m6y_A | 301 | S-adenosyl-methyltransferase MRAW; SAM-dependent m | 97.9 | |
| 1qam_A | 244 | ERMC' methyltransferase; rRNA methyltransferase ER | 97.9 | |
| 3bt7_A | 369 | TRNA (uracil-5-)-methyltransferase; methyluridine, | 97.88 | |
| 2jjq_A | 425 | Uncharacterized RNA methyltransferase pyrab10780; | 97.84 | |
| 2yx1_A | 336 | Hypothetical protein MJ0883; methyl transferase, t | 97.83 | |
| 3fut_A | 271 | Dimethyladenosine transferase; methyltransferase, | 97.82 | |
| 3ftd_A | 249 | Dimethyladenosine transferase; KSGA, rossmann-like | 97.81 | |
| 3uzu_A | 279 | Ribosomal RNA small subunit methyltransferase A; s | 97.7 | |
| 2okc_A | 445 | Type I restriction enzyme stysji M protein; NP_813 | 97.66 | |
| 2qfm_A | 364 | Spermine synthase; spermidine aminopropyltransfera | 97.66 | |
| 3ldg_A | 384 | Putative uncharacterized protein SMU.472; YPSC, me | 97.52 | |
| 3k0b_A | 393 | Predicted N6-adenine-specific DNA methylase; methy | 97.51 | |
| 3ll7_A | 410 | Putative methyltransferase; methytransferase, stru | 97.47 | |
| 2xyq_A | 290 | Putative 2'-O-methyl transferase; transferase-vira | 97.47 | |
| 3k6r_A | 278 | Putative transferase PH0793; structural genomics, | 97.43 | |
| 2b9e_A | 309 | NOL1/NOP2/SUN domain family, member 5 isoform 2; m | 97.42 | |
| 3ldu_A | 385 | Putative methylase; structural genomics, PSI-2, pr | 97.41 | |
| 2r6z_A | 258 | UPF0341 protein in RSP 3' region; alpha-beta prote | 97.41 | |
| 1qyr_A | 252 | KSGA, high level kasugamycin resistance protein, S | 97.39 | |
| 2ar0_A | 541 | M.ecoki, type I restriction enzyme ecoki M protein | 97.37 | |
| 2dul_A | 378 | N(2),N(2)-dimethylguanosine tRNA methyltransferas; | 97.34 | |
| 4gqb_A | 637 | Protein arginine N-methyltransferase 5; TIM barrel | 97.22 | |
| 3b5i_A | 374 | S-adenosyl-L-methionine:salicylic acid carboxyl me | 97.17 | |
| 1yub_A | 245 | Ermam, rRNA methyltransferase; MLS antibiotics; NM | 97.15 | |
| 3axs_A | 392 | Probable N(2),N(2)-dimethylguanosine tRNA methylt | 97.12 | |
| 3s1s_A | 878 | Restriction endonuclease bpusi; PD--(D/E)XK cataly | 96.95 | |
| 3v97_A | 703 | Ribosomal RNA large subunit methyltransferase L; Y | 96.91 | |
| 3cvo_A | 202 | Methyltransferase-like protein of unknown functio; | 96.84 | |
| 3ua3_A | 745 | Protein arginine N-methyltransferase 5; TIM-barrel | 96.83 | |
| 2oyr_A | 258 | UPF0341 protein YHIQ; alpha-beta protein, structur | 96.74 | |
| 3khk_A | 544 | Type I restriction-modification system methylation | 96.7 | |
| 2qy6_A | 257 | UPF0209 protein YFCK; structural genomics, unknown | 96.59 | |
| 2efj_A | 384 | 3,7-dimethylxanthine methyltransferase; SAM-depend | 96.56 | |
| 2zig_A | 297 | TTHA0409, putative modification methylase; methylt | 96.54 | |
| 3o4f_A | 294 | Spermidine synthase; aminopropyltransferase, polya | 96.4 | |
| 1m6e_X | 359 | S-adenosyl-L-methionnine:salicylic acid carboxyl m | 96.32 | |
| 3evf_A | 277 | RNA-directed RNA polymerase NS5; NS5 methyltransfe | 96.24 | |
| 3lkd_A | 542 | Type I restriction-modification system methyltrans | 96.19 | |
| 4auk_A | 375 | Ribosomal RNA large subunit methyltransferase M; Y | 96.08 | |
| 1wg8_A | 285 | Predicted S-adenosylmethionine-dependent methyltra | 96.05 | |
| 3gcz_A | 282 | Polyprotein; flavivirus, RNA capping, methyltransf | 95.88 | |
| 2vz8_A | 2512 | Fatty acid synthase; transferase, phosphopantethei | 95.64 | |
| 2k4m_A | 153 | TR8_protein, UPF0146 protein MTH_1000; alpha+beta, | 95.56 | |
| 3c6k_A | 381 | Spermine synthase; spermidine aminopropyltransfera | 95.19 | |
| 1rjd_A | 334 | PPM1P, carboxy methyl transferase for protein phos | 95.15 | |
| 2wk1_A | 282 | NOVP; transferase, O-methyltransferase, novobiocin | 94.73 | |
| 1g60_A | 260 | Adenine-specific methyltransferase MBOIIA; structu | 94.55 | |
| 3eld_A | 300 | Methyltransferase; flavivirus, RNA capping, guanyl | 94.53 | |
| 3ufb_A | 530 | Type I restriction-modification system methyltran | 94.32 | |
| 2uyo_A | 310 | Hypothetical protein ML2640; putative methyltransf | 94.3 | |
| 1i4w_A | 353 | Mitochondrial replication protein MTF1; mitochondr | 93.06 | |
| 1zkd_A | 387 | DUF185; NESG, RPR58, structural genomics, PSI, pro | 91.63 | |
| 3tka_A | 347 | Ribosomal RNA small subunit methyltransferase H; H | 91.59 | |
| 2oo3_A | 283 | Protein involved in catabolism of external DNA; st | 90.85 | |
| 3p8z_A | 267 | Mtase, non-structural protein 5; methyltransferase | 87.3 | |
| 3lkz_A | 321 | Non-structural protein 5; flavivirus, methyltransf | 86.56 | |
| 2py6_A | 409 | Methyltransferase FKBM; YP_546752.1, structural ge | 85.66 | |
| 4fzv_A | 359 | Putative methyltransferase NSUN4; mterf fold, meth | 85.23 | |
| 1boo_A | 323 | Protein (N-4 cytosine-specific methyltransferase P | 84.72 | |
| 2c7p_A | 327 | Modification methylase HHAI; DNA methyltransferase | 81.6 | |
| 2px2_A | 269 | Genome polyprotein [contains: capsid protein C (co | 80.71 |
| >4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=2.1e-14 Score=136.46 Aligned_cols=139 Identities=15% Similarity=0.190 Sum_probs=103.8
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHCCCCCCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCCCC
Q 015771 4 LLMLLLECLLFTLLVTESFARRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLP 83 (400)
Q Consensus 4 l~~~~~~~Ya~~~~vL~el~~rlp~~~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~~~ 83 (400)
|+.+..+.|..+.+.+..+..+... ...+|||+|||+|..+.+++..++....+|++||.|+.|++.|++.++......
T Consensus 45 ~i~rsvP~Y~~~~~~i~~l~~~~~~-~~~~vLDlGcGtG~~~~~la~~~~~~~~~v~gvD~s~~ml~~A~~~~~~~~~~~ 123 (261)
T 4gek_A 45 MIQRSVPGYSNIISMIGMLAERFVQ-PGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPT 123 (261)
T ss_dssp HHHHHSTTHHHHHHHHHHHHHHHCC-TTCEEEEETCTTTHHHHHHHHTCCSSSCEEEEEESCHHHHHHHHHHHHTSCCSS
T ss_pred hHhhcCCCHHHHHHHHHHHHHHhCC-CCCEEEEEeCCCCHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHHHHhhccCc
Confidence 4556667898888888888877432 236999999999999999988776556799999999999999999887543221
Q ss_pred ceeechhhhHhhhhcccCCCcccEEeecccccCCCCHHHHHHHHHHHHhc--cCCeEEEEcCCCCCch
Q 015771 84 LIHSYNSIQALNKDISKSEREHDLVIASYVLGEVPSLQDRITIVRQLWDL--TRDVLVLVEPGTPQGS 149 (400)
Q Consensus 84 ~~~~~~~~~~l~~~l~~~~~~~DLVias~~L~eL~~~~~r~~~i~~Lw~~--~gG~LVlVE~Gtp~Gf 149 (400)
.+... ..++. .+ +.+.||+|++.++|++++ ..++..+++++.+. |||.|||.|+..+...
T Consensus 124 ~v~~~--~~D~~-~~--~~~~~d~v~~~~~l~~~~-~~~~~~~l~~i~~~LkpGG~lii~e~~~~~~~ 185 (261)
T 4gek_A 124 PVDVI--EGDIR-DI--AIENASMVVLNFTLQFLE-PSERQALLDKIYQGLNPGGALVLSEKFSFEDA 185 (261)
T ss_dssp CEEEE--ESCTT-TC--CCCSEEEEEEESCGGGSC-HHHHHHHHHHHHHHEEEEEEEEEEEEBCCSSH
T ss_pred eEEEe--ecccc-cc--cccccccceeeeeeeecC-chhHhHHHHHHHHHcCCCcEEEEEeccCCCCH
Confidence 11110 11222 23 235799999999999997 66787888888774 8999999998766544
|
| >2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A* | Back alignment and structure |
|---|
Probab=99.27 E-value=9e-12 Score=119.35 Aligned_cols=119 Identities=17% Similarity=0.218 Sum_probs=74.1
Q ss_pred CCCeEEEEccchhHHHHHH----HHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCCCCceee---chhhhHhhhh--ccc
Q 015771 30 SPAKVLDFGAGTGSAFWAL----REVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHS---YNSIQALNKD--ISK 100 (400)
Q Consensus 30 ~p~~VLDvG~G~Gt~~~Al----~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~~~~~~~---~~~~~~l~~~--l~~ 100 (400)
.+.+|||+|||+|..+..+ ...++.....++++|+|++|++.|++.+.....++.+.. .....++... .+.
T Consensus 52 ~~~~VLDiG~GtG~~~~~~l~~l~~~~~~~~v~~~~vD~S~~ml~~a~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 131 (292)
T 2aot_A 52 SEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKTSNLENVKFAWHKETSSEYQSRMLEKK 131 (292)
T ss_dssp SEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECSCHHHHHHHHHHHHTCSSCTTEEEEEECSCHHHHHHHHHTTT
T ss_pred CCCeEEEEcCCCCHHHHHHHHHHHhhCCCceeeEEEEeCCHHHHHHHHHHHHhccCCCcceEEEEecchhhhhhhhcccc
Confidence 3469999999999765432 233332111459999999999999988754322222211 0011111100 012
Q ss_pred CCCcccEEeecccccCCCCHHHHHHHHHHHHhccCCeEEEEcCCCCCch
Q 015771 101 SEREHDLVIASYVLGEVPSLQDRITIVRQLWDLTRDVLVLVEPGTPQGS 149 (400)
Q Consensus 101 ~~~~~DLVias~~L~eL~~~~~r~~~i~~Lw~~~gG~LVlVE~Gtp~Gf 149 (400)
..++||+|+++++|+++++....+.-+.+++ +|||.|+|++.....++
T Consensus 132 ~~~~fD~V~~~~~l~~~~d~~~~l~~~~r~L-kpgG~l~i~~~~~~~~~ 179 (292)
T 2aot_A 132 ELQKWDFIHMIQMLYYVKDIPATLKFFHSLL-GTNAKMLIIVVSGSSGW 179 (292)
T ss_dssp CCCCEEEEEEESCGGGCSCHHHHHHHHHHTE-EEEEEEEEEEECTTSHH
T ss_pred CCCceeEEEEeeeeeecCCHHHHHHHHHHHc-CCCcEEEEEEecCCccH
Confidence 3578999999999999997765444444444 38999999987544333
|
| >3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.26 E-value=8e-11 Score=108.31 Aligned_cols=110 Identities=17% Similarity=0.306 Sum_probs=83.1
Q ss_pred CCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCCCCceeechhhhHhhhhcccCCCcccEEe
Q 015771 30 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDISKSEREHDLVI 109 (400)
Q Consensus 30 ~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~~~~~~~~~~~~~l~~~l~~~~~~~DLVi 109 (400)
.+.+|||+|||+|..+..++..++ ..+++++|.|+.|++.++..+....++.++.. ++. .++.. ++||+|+
T Consensus 44 ~~~~vLDiG~G~G~~~~~l~~~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~-----d~~-~~~~~-~~fD~v~ 114 (234)
T 3dtn_A 44 ENPDILDLGAGTGLLSAFLMEKYP--EATFTLVDMSEKMLEIAKNRFRGNLKVKYIEA-----DYS-KYDFE-EKYDMVV 114 (234)
T ss_dssp SSCEEEEETCTTSHHHHHHHHHCT--TCEEEEEESCHHHHHHHHHHTCSCTTEEEEES-----CTT-TCCCC-SCEEEEE
T ss_pred CCCeEEEecCCCCHHHHHHHHhCC--CCeEEEEECCHHHHHHHHHhhccCCCEEEEeC-----chh-ccCCC-CCceEEE
Confidence 457999999999999999888775 36899999999999999998875443322221 122 22223 7899999
Q ss_pred ecccccCCCCHHHHHHHHHHHHhc--cCCeEEEEcCCCCCch
Q 015771 110 ASYVLGEVPSLQDRITIVRQLWDL--TRDVLVLVEPGTPQGS 149 (400)
Q Consensus 110 as~~L~eL~~~~~r~~~i~~Lw~~--~gG~LVlVE~Gtp~Gf 149 (400)
+.++|++++ ...+..+++++.+. |||.|+++++..+...
T Consensus 115 ~~~~l~~~~-~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~ 155 (234)
T 3dtn_A 115 SALSIHHLE-DEDKKELYKRSYSILKESGIFINADLVHGETA 155 (234)
T ss_dssp EESCGGGSC-HHHHHHHHHHHHHHEEEEEEEEEEEECBCSSH
T ss_pred EeCccccCC-HHHHHHHHHHHHHhcCCCcEEEEEEecCCCCh
Confidence 999999996 55555677776654 8999999998665544
|
| >1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.25 E-value=2.2e-11 Score=114.20 Aligned_cols=119 Identities=13% Similarity=0.230 Sum_probs=83.7
Q ss_pred HHHHHHHCCCCCCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCC--CCCceeechhhhHhhh
Q 015771 19 TESFARRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK--DLPLIHSYNSIQALNK 96 (400)
Q Consensus 19 L~el~~rlp~~~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~--~~~~~~~~~~~~~l~~ 96 (400)
+..+...++...+.+|||+|||+|..+..++..+ .+|+++|+|+.|++.|+..+.... ++.++. .++.
T Consensus 26 ~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~----~~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~-----~d~~- 95 (260)
T 1vl5_A 26 LAKLMQIAALKGNEEVLDVATGGGHVANAFAPFV----KKVVAFDLTEDILKVARAFIEGNGHQQVEYVQ-----GDAE- 95 (260)
T ss_dssp HHHHHHHHTCCSCCEEEEETCTTCHHHHHHGGGS----SEEEEEESCHHHHHHHHHHHHHTTCCSEEEEE-----CCC--
T ss_pred HHHHHHHhCCCCCCEEEEEeCCCCHHHHHHHHhC----CEEEEEeCCHHHHHHHHHHHHhcCCCceEEEE-----ecHH-
Confidence 3444444444456899999999999998887654 389999999999999998875331 222221 1222
Q ss_pred hcccCCCcccEEeecccccCCCCHHHHHHHHHHHHhccCCeEEEEcCCCCCc
Q 015771 97 DISKSEREHDLVIASYVLGEVPSLQDRITIVRQLWDLTRDVLVLVEPGTPQG 148 (400)
Q Consensus 97 ~l~~~~~~~DLVias~~L~eL~~~~~r~~~i~~Lw~~~gG~LVlVE~Gtp~G 148 (400)
.++...++||+|++.++|+++++......-+.++++ |||.|+++++..+..
T Consensus 96 ~l~~~~~~fD~V~~~~~l~~~~d~~~~l~~~~r~Lk-pgG~l~~~~~~~~~~ 146 (260)
T 1vl5_A 96 QMPFTDERFHIVTCRIAAHHFPNPASFVSEAYRVLK-KGGQLLLVDNSAPEN 146 (260)
T ss_dssp CCCSCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEE-EEEEEEEEEEEBCSS
T ss_pred hCCCCCCCEEEEEEhhhhHhcCCHHHHHHHHHHHcC-CCCEEEEEEcCCCCC
Confidence 234456789999999999999876544444444443 899999998876654
|
| >3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A* | Back alignment and structure |
|---|
Probab=99.25 E-value=2.8e-11 Score=110.06 Aligned_cols=108 Identities=12% Similarity=0.131 Sum_probs=81.7
Q ss_pred HCCCCCCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCCCCceeechhhhHhhhhcccCCCc
Q 015771 25 RLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDISKSERE 104 (400)
Q Consensus 25 rlp~~~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 104 (400)
.++...+.+|||+|||+|..+..+++. ..+|+++|.|+.|++.++..+....++.++.. ++. .++ ..++
T Consensus 46 ~~~~~~~~~vLDiGcG~G~~~~~l~~~----~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~-----d~~-~~~-~~~~ 114 (216)
T 3ofk_A 46 SLSSGAVSNGLEIGCAAGAFTEKLAPH----CKRLTVIDVMPRAIGRACQRTKRWSHISWAAT-----DIL-QFS-TAEL 114 (216)
T ss_dssp HTTTSSEEEEEEECCTTSHHHHHHGGG----EEEEEEEESCHHHHHHHHHHTTTCSSEEEEEC-----CTT-TCC-CSCC
T ss_pred HcccCCCCcEEEEcCCCCHHHHHHHHc----CCEEEEEECCHHHHHHHHHhcccCCCeEEEEc-----chh-hCC-CCCC
Confidence 344445579999999999998887754 35899999999999999998876433333222 222 122 4578
Q ss_pred ccEEeecccccCCCCHHHHHHHHHHHHhc--cCCeEEEEcC
Q 015771 105 HDLVIASYVLGEVPSLQDRITIVRQLWDL--TRDVLVLVEP 143 (400)
Q Consensus 105 ~DLVias~~L~eL~~~~~r~~~i~~Lw~~--~gG~LVlVE~ 143 (400)
||+|++.++|+++++......++.++.+. +||.|++..+
T Consensus 115 fD~v~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 155 (216)
T 3ofk_A 115 FDLIVVAEVLYYLEDMTQMRTAIDNMVKMLAPGGHLVFGSA 155 (216)
T ss_dssp EEEEEEESCGGGSSSHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred ccEEEEccHHHhCCCHHHHHHHHHHHHHHcCCCCEEEEEec
Confidence 99999999999999877777778877765 8999998765
|
| >3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A* | Back alignment and structure |
|---|
Probab=99.22 E-value=4.3e-11 Score=111.75 Aligned_cols=119 Identities=13% Similarity=0.233 Sum_probs=85.4
Q ss_pred HHHHHHHCCCCCCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCCCCceeechhhhHhhhhc
Q 015771 19 TESFARRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDI 98 (400)
Q Consensus 19 L~el~~rlp~~~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~~~~~~~~~~~~~l~~~l 98 (400)
+..+...++.-.+.+|||+|||+|..+..++..++ .+|+++|+|+.|++.++..+....++.++.. ++. .+
T Consensus 44 ~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~---~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~-----d~~-~~ 114 (266)
T 3ujc_A 44 TKKILSDIELNENSKVLDIGSGLGGGCMYINEKYG---AHTHGIDICSNIVNMANERVSGNNKIIFEAN-----DIL-TK 114 (266)
T ss_dssp HHHHTTTCCCCTTCEEEEETCTTSHHHHHHHHHHC---CEEEEEESCHHHHHHHHHTCCSCTTEEEEEC-----CTT-TC
T ss_pred HHHHHHhcCCCCCCEEEEECCCCCHHHHHHHHHcC---CEEEEEeCCHHHHHHHHHHhhcCCCeEEEEC-----ccc-cC
Confidence 34444444433457999999999999988887653 5899999999999999998765422222221 222 23
Q ss_pred ccCCCcccEEeecccccCCCCHHHHHHHHHHHHhc--cCCeEEEEcCCCCC
Q 015771 99 SKSEREHDLVIASYVLGEVPSLQDRITIVRQLWDL--TRDVLVLVEPGTPQ 147 (400)
Q Consensus 99 ~~~~~~~DLVias~~L~eL~~~~~r~~~i~~Lw~~--~gG~LVlVE~Gtp~ 147 (400)
+...++||+|++.++|++++ ..+...+++++.+. |||.|++.++..+.
T Consensus 115 ~~~~~~fD~v~~~~~l~~~~-~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~ 164 (266)
T 3ujc_A 115 EFPENNFDLIYSRDAILALS-LENKNKLFQKCYKWLKPTGTLLITDYCATE 164 (266)
T ss_dssp CCCTTCEEEEEEESCGGGSC-HHHHHHHHHHHHHHEEEEEEEEEEEEEESC
T ss_pred CCCCCcEEEEeHHHHHHhcC-hHHHHHHHHHHHHHcCCCCEEEEEEeccCC
Confidence 34467899999999999995 45666677777654 89999999875544
|
| >3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian} | Back alignment and structure |
|---|
Probab=99.22 E-value=3.8e-11 Score=109.32 Aligned_cols=105 Identities=18% Similarity=0.293 Sum_probs=77.4
Q ss_pred CCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCCCCceeechhhhHhhhhcccCCCcccEEe
Q 015771 30 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDISKSEREHDLVI 109 (400)
Q Consensus 30 ~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~~~~~~~~~~~~~l~~~l~~~~~~~DLVi 109 (400)
.+.+|||+|||+|..+..++.. ..+++++|.|+.|++.++..+. .++.++.. ++. .++.. ++||+|+
T Consensus 45 ~~~~vLDiGcG~G~~~~~l~~~----~~~v~~vD~s~~~~~~a~~~~~--~~~~~~~~-----d~~-~~~~~-~~fD~v~ 111 (220)
T 3hnr_A 45 SFGNVLEFGVGTGNLTNKLLLA----GRTVYGIEPSREMRMIAKEKLP--KEFSITEG-----DFL-SFEVP-TSIDTIV 111 (220)
T ss_dssp CCSEEEEECCTTSHHHHHHHHT----TCEEEEECSCHHHHHHHHHHSC--TTCCEESC-----CSS-SCCCC-SCCSEEE
T ss_pred CCCeEEEeCCCCCHHHHHHHhC----CCeEEEEeCCHHHHHHHHHhCC--CceEEEeC-----Chh-hcCCC-CCeEEEE
Confidence 4579999999999998887753 3589999999999999998876 23333322 122 22333 7899999
Q ss_pred ecccccCCCCHHHHHHHHHHHHhc--cCCeEEEEcCCCCCc
Q 015771 110 ASYVLGEVPSLQDRITIVRQLWDL--TRDVLVLVEPGTPQG 148 (400)
Q Consensus 110 as~~L~eL~~~~~r~~~i~~Lw~~--~gG~LVlVE~Gtp~G 148 (400)
+.++|+++++ ..+..+++++.+. +||.|++.++..+..
T Consensus 112 ~~~~l~~~~~-~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~ 151 (220)
T 3hnr_A 112 STYAFHHLTD-DEKNVAIAKYSQLLNKGGKIVFADTIFADQ 151 (220)
T ss_dssp EESCGGGSCH-HHHHHHHHHHHHHSCTTCEEEEEEECBSSH
T ss_pred ECcchhcCCh-HHHHHHHHHHHHhcCCCCEEEEEeccccCh
Confidence 9999999974 4444566666553 899999999765443
|
| >4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans} | Back alignment and structure |
|---|
Probab=99.22 E-value=4.1e-11 Score=113.49 Aligned_cols=123 Identities=19% Similarity=0.240 Sum_probs=84.9
Q ss_pred HHHHHHHHCCCCCCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCCCCceeechhhhHhhhh
Q 015771 18 VTESFARRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKD 97 (400)
Q Consensus 18 vL~el~~rlp~~~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~~~~~~~~~~~~~l~~~ 97 (400)
+++.|....+. ..+|||+|||+|..+..+++. ..+|++||+|+.|++.|++ ..++.++.. +. ..
T Consensus 29 l~~~l~~~~~~--~~~vLDvGcGtG~~~~~l~~~----~~~v~gvD~s~~ml~~a~~----~~~v~~~~~-----~~-e~ 92 (257)
T 4hg2_A 29 LFRWLGEVAPA--RGDALDCGCGSGQASLGLAEF----FERVHAVDPGEAQIRQALR----HPRVTYAVA-----PA-ED 92 (257)
T ss_dssp HHHHHHHHSSC--SSEEEEESCTTTTTHHHHHTT----CSEEEEEESCHHHHHTCCC----CTTEEEEEC-----CT-TC
T ss_pred HHHHHHHhcCC--CCCEEEEcCCCCHHHHHHHHh----CCEEEEEeCcHHhhhhhhh----cCCceeehh-----hh-hh
Confidence 55556655543 368999999999998888853 4589999999999987643 223333322 12 13
Q ss_pred cccCCCcccEEeecccccCCCCHHHHHHHHHHHHhccCCeEEEEcCCCCCchHHHHHHHHH
Q 015771 98 ISKSEREHDLVIASYVLGEVPSLQDRITIVRQLWDLTRDVLVLVEPGTPQGSSIISQMRSH 158 (400)
Q Consensus 98 l~~~~~~~DLVias~~L~eL~~~~~r~~~i~~Lw~~~gG~LVlVE~Gtp~Gf~~I~~aR~~ 158 (400)
++.+.++||+|+++.+|++++ ......-+.+++ +|||.|+++..+.+.....+..+-+.
T Consensus 93 ~~~~~~sfD~v~~~~~~h~~~-~~~~~~e~~rvL-kpgG~l~~~~~~~~~~~~~~~~~~~~ 151 (257)
T 4hg2_A 93 TGLPPASVDVAIAAQAMHWFD-LDRFWAELRRVA-RPGAVFAAVTYGLTRVDPEVDAVVDR 151 (257)
T ss_dssp CCCCSSCEEEEEECSCCTTCC-HHHHHHHHHHHE-EEEEEEEEEEECCCBCCHHHHHHHHH
T ss_pred hcccCCcccEEEEeeehhHhh-HHHHHHHHHHHc-CCCCEEEEEECCCCCCCHHHHHHHHH
Confidence 455678999999999999885 554444455555 38999999998877665545443333
|
| >1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42 | Back alignment and structure |
|---|
Probab=99.20 E-value=8.4e-11 Score=109.24 Aligned_cols=114 Identities=18% Similarity=0.281 Sum_probs=81.6
Q ss_pred HHHHHHCCCCCCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCCCCceeechhhhHhhhhcc
Q 015771 20 ESFARRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDIS 99 (400)
Q Consensus 20 ~el~~rlp~~~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~~~~~~~~~~~~~l~~~l~ 99 (400)
..+...++...+.+|||+|||+|..+..++... ..+|+++|.|+.|++.++..+....++.++.. ++. .++
T Consensus 83 ~~~l~~l~~~~~~~vLDiG~G~G~~~~~l~~~~---~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~-----d~~-~~~ 153 (254)
T 1xtp_A 83 RNFIASLPGHGTSRALDCGAGIGRITKNLLTKL---YATTDLLEPVKHMLEEAKRELAGMPVGKFILA-----SME-TAT 153 (254)
T ss_dssp HHHHHTSTTCCCSEEEEETCTTTHHHHHTHHHH---CSEEEEEESCHHHHHHHHHHTTTSSEEEEEES-----CGG-GCC
T ss_pred HHHHHhhcccCCCEEEEECCCcCHHHHHHHHhh---cCEEEEEeCCHHHHHHHHHHhccCCceEEEEc-----cHH-HCC
Confidence 344444554456899999999999988777553 34799999999999999998765322222221 222 233
Q ss_pred cCCCcccEEeecccccCCCCHHHHHHHHHHHHhc--cCCeEEEEcC
Q 015771 100 KSEREHDLVIASYVLGEVPSLQDRITIVRQLWDL--TRDVLVLVEP 143 (400)
Q Consensus 100 ~~~~~~DLVias~~L~eL~~~~~r~~~i~~Lw~~--~gG~LVlVE~ 143 (400)
...++||+|++.++|++++ ..+...+++++.+. +||.|+|.++
T Consensus 154 ~~~~~fD~v~~~~~l~~~~-~~~~~~~l~~~~~~LkpgG~l~i~~~ 198 (254)
T 1xtp_A 154 LPPNTYDLIVIQWTAIYLT-DADFVKFFKHCQQALTPNGYIFFKEN 198 (254)
T ss_dssp CCSSCEEEEEEESCGGGSC-HHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CCCCCeEEEEEcchhhhCC-HHHHHHHHHHHHHhcCCCeEEEEEec
Confidence 3457899999999999996 34556667666654 8999999986
|
| >3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=99.18 E-value=1.4e-10 Score=108.12 Aligned_cols=113 Identities=20% Similarity=0.231 Sum_probs=80.8
Q ss_pred HHHHHHCCCCCCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCCCCceeechhhhHhhhhcc
Q 015771 20 ESFARRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDIS 99 (400)
Q Consensus 20 ~el~~rlp~~~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~~~~~~~~~~~~~l~~~l~ 99 (400)
..+...++...+.+|||+|||+|..+..++.... .+|+++|+|+.|++.++..+. ..++.++.. ++. .++
T Consensus 34 ~~l~~~~~~~~~~~vLD~GcG~G~~~~~l~~~~~---~~v~~vD~s~~~~~~a~~~~~-~~~~~~~~~-----d~~-~~~ 103 (253)
T 3g5l_A 34 HELKKMLPDFNQKTVLDLGCGFGWHCIYAAEHGA---KKVLGIDLSERMLTEAKRKTT-SPVVCYEQK-----AIE-DIA 103 (253)
T ss_dssp HHHHTTCCCCTTCEEEEETCTTCHHHHHHHHTTC---SEEEEEESCHHHHHHHHHHCC-CTTEEEEEC-----CGG-GCC
T ss_pred HHHHHhhhccCCCEEEEECCCCCHHHHHHHHcCC---CEEEEEECCHHHHHHHHHhhc-cCCeEEEEc-----chh-hCC
Confidence 3455555666778999999999999888876432 389999999999999998876 223332222 222 234
Q ss_pred cCCCcccEEeecccccCCCCHHHHHHHHHHHHhccCCeEEEEcC
Q 015771 100 KSEREHDLVIASYVLGEVPSLQDRITIVRQLWDLTRDVLVLVEP 143 (400)
Q Consensus 100 ~~~~~~DLVias~~L~eL~~~~~r~~~i~~Lw~~~gG~LVlVE~ 143 (400)
...++||+|++.++|+++++.......+.++++ +||.|++..+
T Consensus 104 ~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~Lk-pgG~l~~~~~ 146 (253)
T 3g5l_A 104 IEPDAYNVVLSSLALHYIASFDDICKKVYINLK-SSGSFIFSVE 146 (253)
T ss_dssp CCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEE-EEEEEEEEEE
T ss_pred CCCCCeEEEEEchhhhhhhhHHHHHHHHHHHcC-CCcEEEEEeC
Confidence 446789999999999999766544444555543 7999998755
|
| >3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A | Back alignment and structure |
|---|
Probab=99.18 E-value=1.3e-10 Score=105.86 Aligned_cols=105 Identities=22% Similarity=0.235 Sum_probs=75.2
Q ss_pred CCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCC-------CCCceeechhhhHhhhhcccCC
Q 015771 30 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK-------DLPLIHSYNSIQALNKDISKSE 102 (400)
Q Consensus 30 ~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~-------~~~~~~~~~~~~~l~~~l~~~~ 102 (400)
.+.+|||+|||+|..+..+++..+ ..+++++|.|+.|++.++..+.... ++.++. .++. ..+...
T Consensus 29 ~~~~vLDiGcG~G~~~~~l~~~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~-----~d~~-~~~~~~ 100 (217)
T 3jwh_A 29 NARRVIDLGCGQGNLLKILLKDSF--FEQITGVDVSYRSLEIAQERLDRLRLPRNQWERLQLIQ-----GALT-YQDKRF 100 (217)
T ss_dssp TCCEEEEETCTTCHHHHHHHHCTT--CSEEEEEESCHHHHHHHHHHHTTCCCCHHHHTTEEEEE-----CCTT-SCCGGG
T ss_pred CCCEEEEeCCCCCHHHHHHHhhCC--CCEEEEEECCHHHHHHHHHHHHHhcCCcccCcceEEEe-----CCcc-cccccC
Confidence 457999999999999988886543 3589999999999999999876432 111111 1121 122234
Q ss_pred CcccEEeecccccCCCCHHHHHHHHHHHHhc--cCCeEEEEcC
Q 015771 103 REHDLVIASYVLGEVPSLQDRITIVRQLWDL--TRDVLVLVEP 143 (400)
Q Consensus 103 ~~~DLVias~~L~eL~~~~~r~~~i~~Lw~~--~gG~LVlVE~ 143 (400)
++||+|++.++|++++ ......+++++.+. +||.+|++..
T Consensus 101 ~~fD~v~~~~~l~~~~-~~~~~~~l~~~~~~LkpgG~li~~~~ 142 (217)
T 3jwh_A 101 HGYDAATVIEVIEHLD-LSRLGAFERVLFEFAQPKIVIVTTPN 142 (217)
T ss_dssp CSCSEEEEESCGGGCC-HHHHHHHHHHHHTTTCCSEEEEEEEB
T ss_pred CCcCEEeeHHHHHcCC-HHHHHHHHHHHHHHcCCCEEEEEccC
Confidence 6899999999999996 55556777777764 7886666544
|
| >3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes} | Back alignment and structure |
|---|
Probab=99.18 E-value=9.4e-11 Score=110.36 Aligned_cols=120 Identities=17% Similarity=0.141 Sum_probs=85.9
Q ss_pred HHHHHHHHHHHCCCCCCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCC---CCCceeechhh
Q 015771 15 TLLVTESFARRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK---DLPLIHSYNSI 91 (400)
Q Consensus 15 ~~~vL~el~~rlp~~~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~---~~~~~~~~~~~ 91 (400)
..+.+..+...++...+.+|||+|||+|..+..++...+ .+|+++|.|+.|++.++..+.... ++.++..
T Consensus 46 ~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~---~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~---- 118 (273)
T 3bus_A 46 TDRLTDEMIALLDVRSGDRVLDVGCGIGKPAVRLATARD---VRVTGISISRPQVNQANARATAAGLANRVTFSYA---- 118 (273)
T ss_dssp HHHHHHHHHHHSCCCTTCEEEEESCTTSHHHHHHHHHSC---CEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEEC----
T ss_pred HHHHHHHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHhcC---CEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEEC----
Confidence 345566777777655568999999999999988887653 589999999999999998875432 1222211
Q ss_pred hHhhhhcccCCCcccEEeecccccCCCCHHHHHHHHHHHHhc--cCCeEEEEcCCCC
Q 015771 92 QALNKDISKSEREHDLVIASYVLGEVPSLQDRITIVRQLWDL--TRDVLVLVEPGTP 146 (400)
Q Consensus 92 ~~l~~~l~~~~~~~DLVias~~L~eL~~~~~r~~~i~~Lw~~--~gG~LVlVE~Gtp 146 (400)
++. .++...++||+|++..+|+++++.. .+++++.+. |||.|++.++...
T Consensus 119 -d~~-~~~~~~~~fD~v~~~~~l~~~~~~~---~~l~~~~~~L~pgG~l~i~~~~~~ 170 (273)
T 3bus_A 119 -DAM-DLPFEDASFDAVWALESLHHMPDRG---RALREMARVLRPGGTVAIADFVLL 170 (273)
T ss_dssp -CTT-SCCSCTTCEEEEEEESCTTTSSCHH---HHHHHHHTTEEEEEEEEEEEEEES
T ss_pred -ccc-cCCCCCCCccEEEEechhhhCCCHH---HHHHHHHHHcCCCeEEEEEEeecc
Confidence 122 2344457899999999999998654 445555543 8999999987543
|
| >4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.18 E-value=8.9e-11 Score=111.59 Aligned_cols=121 Identities=18% Similarity=0.112 Sum_probs=80.8
Q ss_pred HHHHHHHHHHCCCCCCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCCCCceeechhhhHhh
Q 015771 16 LLVTESFARRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALN 95 (400)
Q Consensus 16 ~~vL~el~~rlp~~~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~~~~~~~~~~~~~l~ 95 (400)
.+.+..+...++. ++.+|||+|||+|..+..++.. ..+|+++|+|+.|++.|+..+......+.+... ..++.
T Consensus 55 ~~~l~~~l~~~~~-~~~~vLDiGcG~G~~~~~l~~~----~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~--~~d~~ 127 (285)
T 4htf_A 55 WQDLDRVLAEMGP-QKLRVLDAGGGEGQTAIKMAER----GHQVILCDLSAQMIDRAKQAAEAKGVSDNMQFI--HCAAQ 127 (285)
T ss_dssp HHHHHHHHHHTCS-SCCEEEEETCTTCHHHHHHHHT----TCEEEEEESCHHHHHHHHHHHHC-CCGGGEEEE--ESCGG
T ss_pred HHHHHHHHHhcCC-CCCEEEEeCCcchHHHHHHHHC----CCEEEEEECCHHHHHHHHHHHHhcCCCcceEEE--EcCHH
Confidence 3345555555543 3679999999999998887754 358999999999999999988654211111110 11222
Q ss_pred hhcccCCCcccEEeecccccCCCCHHHHHHHHHHHHhccCCeEEEEcCC
Q 015771 96 KDISKSEREHDLVIASYVLGEVPSLQDRITIVRQLWDLTRDVLVLVEPG 144 (400)
Q Consensus 96 ~~l~~~~~~~DLVias~~L~eL~~~~~r~~~i~~Lw~~~gG~LVlVE~G 144 (400)
...+...++||+|++.++|+++++.......+.+++ +|||.|++..+.
T Consensus 128 ~~~~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L-kpgG~l~~~~~~ 175 (285)
T 4htf_A 128 DVASHLETPVDLILFHAVLEWVADPRSVLQTLWSVL-RPGGVLSLMFYN 175 (285)
T ss_dssp GTGGGCSSCEEEEEEESCGGGCSCHHHHHHHHHHTE-EEEEEEEEEEEB
T ss_pred HhhhhcCCCceEEEECchhhcccCHHHHHHHHHHHc-CCCeEEEEEEeC
Confidence 111134578999999999999987654333444444 289999998764
|
| >1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36 | Back alignment and structure |
|---|
Probab=99.17 E-value=4.3e-11 Score=108.76 Aligned_cols=101 Identities=14% Similarity=0.008 Sum_probs=71.3
Q ss_pred CCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcC--------------CCCCCceeechhhhHhh
Q 015771 30 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQG--------------PKDLPLIHSYNSIQALN 95 (400)
Q Consensus 30 ~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~--------------~~~~~~~~~~~~~~~l~ 95 (400)
.+.+|||+|||+|..+..+++. ..+|++||.|+.|++.|++.... ..++.++.. ++.
T Consensus 22 ~~~~vLD~GCG~G~~~~~la~~----g~~V~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-----d~~ 92 (203)
T 1pjz_A 22 PGARVLVPLCGKSQDMSWLSGQ----GYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCG-----DFF 92 (203)
T ss_dssp TTCEEEETTTCCSHHHHHHHHH----CCEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEE-----CCS
T ss_pred CCCEEEEeCCCCcHhHHHHHHC----CCeEEEEeCCHHHHHHHHHHccCCcccccccccccccCCccEEEEC-----ccc
Confidence 4579999999999988877753 34899999999999999987642 112222221 121
Q ss_pred hhcccCC-CcccEEeecccccCCCCHHHHHHHHHHHHhc--cCCeEEEE
Q 015771 96 KDISKSE-REHDLVIASYVLGEVPSLQDRITIVRQLWDL--TRDVLVLV 141 (400)
Q Consensus 96 ~~l~~~~-~~~DLVias~~L~eL~~~~~r~~~i~~Lw~~--~gG~LVlV 141 (400)
.++... ++||+|++..+|++++ ...+..+++++.+. |||.++++
T Consensus 93 -~l~~~~~~~fD~v~~~~~l~~l~-~~~~~~~l~~~~r~LkpgG~~~l~ 139 (203)
T 1pjz_A 93 -ALTARDIGHCAAFYDRAAMIALP-ADMRERYVQHLEALMPQACSGLLI 139 (203)
T ss_dssp -SSTHHHHHSEEEEEEESCGGGSC-HHHHHHHHHHHHHHSCSEEEEEEE
T ss_pred -cCCcccCCCEEEEEECcchhhCC-HHHHHHHHHHHHHHcCCCcEEEEE
Confidence 122222 5899999999999996 56676777777663 89984444
|
| >3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A* | Back alignment and structure |
|---|
Probab=99.17 E-value=2.2e-10 Score=103.59 Aligned_cols=114 Identities=18% Similarity=0.211 Sum_probs=79.5
Q ss_pred HHHHCCCCC-CCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCCCCceeechhhhHhhhhccc
Q 015771 22 FARRLPGFS-PAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDISK 100 (400)
Q Consensus 22 l~~rlp~~~-p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~~~~~~~~~~~~~l~~~l~~ 100 (400)
+...+.... +.+|||+|||+|..+..++.. ..+++++|.|+.|++.++. ....++.++.. ++.. + .
T Consensus 37 ~~~~l~~~~~~~~vLdiG~G~G~~~~~l~~~----~~~v~~~D~s~~~~~~a~~--~~~~~~~~~~~-----d~~~-~-~ 103 (218)
T 3ou2_A 37 ALERLRAGNIRGDVLELASGTGYWTRHLSGL----ADRVTALDGSAEMIAEAGR--HGLDNVEFRQQ-----DLFD-W-T 103 (218)
T ss_dssp HHHHHTTTTSCSEEEEESCTTSHHHHHHHHH----SSEEEEEESCHHHHHHHGG--GCCTTEEEEEC-----CTTS-C-C
T ss_pred HHHHHhcCCCCCeEEEECCCCCHHHHHHHhc----CCeEEEEeCCHHHHHHHHh--cCCCCeEEEec-----cccc-C-C
Confidence 333333333 369999999999998887765 3589999999999999987 22223322222 1221 2 3
Q ss_pred CCCcccEEeecccccCCCCHHHHHHHHHHHHhc--cCCeEEEEcCCCCCch
Q 015771 101 SEREHDLVIASYVLGEVPSLQDRITIVRQLWDL--TRDVLVLVEPGTPQGS 149 (400)
Q Consensus 101 ~~~~~DLVias~~L~eL~~~~~r~~~i~~Lw~~--~gG~LVlVE~Gtp~Gf 149 (400)
..++||+|+++++|++++ ......+++++.+. +||.|++++++.+..+
T Consensus 104 ~~~~~D~v~~~~~l~~~~-~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~ 153 (218)
T 3ou2_A 104 PDRQWDAVFFAHWLAHVP-DDRFEAFWESVRSAVAPGGVVEFVDVTDHERR 153 (218)
T ss_dssp CSSCEEEEEEESCGGGSC-HHHHHHHHHHHHHHEEEEEEEEEEEECCCC--
T ss_pred CCCceeEEEEechhhcCC-HHHHHHHHHHHHHHcCCCeEEEEEeCCCCccc
Confidence 467899999999999997 44455666666654 8999999999876544
|
| >3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A* | Back alignment and structure |
|---|
Probab=99.17 E-value=2.1e-10 Score=107.58 Aligned_cols=115 Identities=21% Similarity=0.249 Sum_probs=84.1
Q ss_pred HHHHHHHCCCCCCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCCCCceeechhhhHhhhhc
Q 015771 19 TESFARRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDI 98 (400)
Q Consensus 19 L~el~~rlp~~~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~~~~~~~~~~~~~l~~~l 98 (400)
+..+...++ .+.+|||+|||+|..+..++.. ..+|+++|+|+.|++.|+..+. ++.++.. ++. .+
T Consensus 41 ~~~l~~~~~--~~~~vLDiGcG~G~~~~~l~~~----~~~v~gvD~s~~~~~~a~~~~~---~~~~~~~-----d~~-~~ 105 (263)
T 3pfg_A 41 AALVRRHSP--KAASLLDVACGTGMHLRHLADS----FGTVEGLELSADMLAIARRRNP---DAVLHHG-----DMR-DF 105 (263)
T ss_dssp HHHHHHHCT--TCCEEEEETCTTSHHHHHHTTT----SSEEEEEESCHHHHHHHHHHCT---TSEEEEC-----CTT-TC
T ss_pred HHHHHhhCC--CCCcEEEeCCcCCHHHHHHHHc----CCeEEEEECCHHHHHHHHhhCC---CCEEEEC-----ChH-HC
Confidence 344444443 3479999999999998887743 3589999999999999998765 2333322 122 12
Q ss_pred ccCCCcccEEeecc-cccCCCCHHHHHHHHHHHHhc--cCCeEEEEcCCCCCch
Q 015771 99 SKSEREHDLVIASY-VLGEVPSLQDRITIVRQLWDL--TRDVLVLVEPGTPQGS 149 (400)
Q Consensus 99 ~~~~~~~DLVias~-~L~eL~~~~~r~~~i~~Lw~~--~gG~LVlVE~Gtp~Gf 149 (400)
+. .++||+|++.+ +|+++++..+...+++++.+. |||.|+|.....|..+
T Consensus 106 ~~-~~~fD~v~~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~ 158 (263)
T 3pfg_A 106 SL-GRRFSAVTCMFSSIGHLAGQAELDAALERFAAHVLPDGVVVVEPWWFPENF 158 (263)
T ss_dssp CC-SCCEEEEEECTTGGGGSCHHHHHHHHHHHHHHTEEEEEEEEECCCCCTTTC
T ss_pred Cc-cCCcCEEEEcCchhhhcCCHHHHHHHHHHHHHhcCCCcEEEEEeccChhhc
Confidence 22 57899999998 999998777777888888775 8999998766665544
|
| >3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.16 E-value=1.9e-10 Score=105.14 Aligned_cols=114 Identities=18% Similarity=0.259 Sum_probs=83.6
Q ss_pred CCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCCC----CceeechhhhHhhhhcccCCCcc
Q 015771 30 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDL----PLIHSYNSIQALNKDISKSEREH 105 (400)
Q Consensus 30 ~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~~----~~~~~~~~~~~l~~~l~~~~~~~ 105 (400)
.+.+|||+|||+|..+..++.. ..+|+++|.|+.|++.++..+...... ..+.. ...++. .++...++|
T Consensus 30 ~~~~vLdiG~G~G~~~~~l~~~----~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~--~~~d~~-~~~~~~~~~ 102 (235)
T 3sm3_A 30 EDDEILDIGCGSGKISLELASK----GYSVTGIDINSEAIRLAETAARSPGLNQKTGGKAEF--KVENAS-SLSFHDSSF 102 (235)
T ss_dssp TTCEEEEETCTTSHHHHHHHHT----TCEEEEEESCHHHHHHHHHHTTCCSCCSSSSCEEEE--EECCTT-SCCSCTTCE
T ss_pred CCCeEEEECCCCCHHHHHHHhC----CCeEEEEECCHHHHHHHHHHHHhcCCccccCcceEE--EEeccc-ccCCCCCce
Confidence 3479999999999998888754 358999999999999999988654210 01110 011122 233346789
Q ss_pred cEEeecccccCCCCHHHHHHHHHHHHhc--cCCeEEEEcCCCCCchH
Q 015771 106 DLVIASYVLGEVPSLQDRITIVRQLWDL--TRDVLVLVEPGTPQGSS 150 (400)
Q Consensus 106 DLVias~~L~eL~~~~~r~~~i~~Lw~~--~gG~LVlVE~Gtp~Gf~ 150 (400)
|+|++.++|+++++...+..+++++.+. +||.|++++++......
T Consensus 103 D~v~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~ 149 (235)
T 3sm3_A 103 DFAVMQAFLTSVPDPKERSRIIKEVFRVLKPGAYLYLVEFGQNWHLK 149 (235)
T ss_dssp EEEEEESCGGGCCCHHHHHHHHHHHHHHEEEEEEEEEEEEBCCTTSH
T ss_pred eEEEEcchhhcCCCHHHHHHHHHHHHHHcCCCeEEEEEECCcchhHH
Confidence 9999999999999888777777777664 89999999987655443
|
| >2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A | Back alignment and structure |
|---|
Probab=99.16 E-value=9.6e-11 Score=107.87 Aligned_cols=103 Identities=22% Similarity=0.364 Sum_probs=76.3
Q ss_pred CCCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCCCCceeechhhhHhhhhcccCCCcccEE
Q 015771 29 FSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDISKSEREHDLV 108 (400)
Q Consensus 29 ~~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~~~~~~~~~~~~~l~~~l~~~~~~~DLV 108 (400)
..+.+|||+|||+|..+..+++.. .+|+++|.|+.|++.|+..+.. ++.++.. ++.. + ...++||+|
T Consensus 41 ~~~~~vLDiGcG~G~~~~~l~~~~----~~v~gvD~s~~~~~~a~~~~~~--~v~~~~~-----d~~~-~-~~~~~fD~v 107 (250)
T 2p7i_A 41 FRPGNLLELGSFKGDFTSRLQEHF----NDITCVEASEEAISHAQGRLKD--GITYIHS-----RFED-A-QLPRRYDNI 107 (250)
T ss_dssp CCSSCEEEESCTTSHHHHHHTTTC----SCEEEEESCHHHHHHHHHHSCS--CEEEEES-----CGGG-C-CCSSCEEEE
T ss_pred cCCCcEEEECCCCCHHHHHHHHhC----CcEEEEeCCHHHHHHHHHhhhC--CeEEEEc-----cHHH-c-CcCCcccEE
Confidence 345799999999999988877543 3799999999999999988754 3332222 1221 2 245789999
Q ss_pred eecccccCCCCHHHHHHHHHHHH-hc--cCCeEEEEcCCCCC
Q 015771 109 IASYVLGEVPSLQDRITIVRQLW-DL--TRDVLVLVEPGTPQ 147 (400)
Q Consensus 109 ias~~L~eL~~~~~r~~~i~~Lw-~~--~gG~LVlVE~Gtp~ 147 (400)
++.++|+++++.. .+++++. +. |||.|++.++....
T Consensus 108 ~~~~~l~~~~~~~---~~l~~~~~~~LkpgG~l~i~~~~~~~ 146 (250)
T 2p7i_A 108 VLTHVLEHIDDPV---ALLKRINDDWLAEGGRLFLVCPNANA 146 (250)
T ss_dssp EEESCGGGCSSHH---HHHHHHHHTTEEEEEEEEEEEECTTC
T ss_pred EEhhHHHhhcCHH---HHHHHHHHHhcCCCCEEEEEcCChHH
Confidence 9999999998664 5566666 43 89999999886544
|
| >2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.16 E-value=8.6e-11 Score=109.49 Aligned_cols=115 Identities=18% Similarity=0.259 Sum_probs=83.1
Q ss_pred HHHHHHHHCCCCCCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCCCCceeechhhhHhhhh
Q 015771 18 VTESFARRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKD 97 (400)
Q Consensus 18 vL~el~~rlp~~~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~~~~~~~~~~~~~l~~~ 97 (400)
...++...++...+.+|||+|||+|..+..++..++ ..+++++|.|+.|++.++.... ++.++.. ++. .
T Consensus 21 ~~~~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~--~~~v~~~D~s~~~~~~a~~~~~---~~~~~~~-----d~~-~ 89 (259)
T 2p35_A 21 PARDLLAQVPLERVLNGYDLGCGPGNSTELLTDRYG--VNVITGIDSDDDMLEKAADRLP---NTNFGKA-----DLA-T 89 (259)
T ss_dssp HHHHHHTTCCCSCCSSEEEETCTTTHHHHHHHHHHC--TTSEEEEESCHHHHHHHHHHST---TSEEEEC-----CTT-T
T ss_pred HHHHHHHhcCCCCCCEEEEecCcCCHHHHHHHHhCC--CCEEEEEECCHHHHHHHHHhCC---CcEEEEC-----Chh-h
Confidence 344555665544568999999999999998888765 3579999999999999988732 2332222 122 2
Q ss_pred cccCCCcccEEeecccccCCCCHHHHHHHHHHHHhc--cCCeEEEEcCCCCC
Q 015771 98 ISKSEREHDLVIASYVLGEVPSLQDRITIVRQLWDL--TRDVLVLVEPGTPQ 147 (400)
Q Consensus 98 l~~~~~~~DLVias~~L~eL~~~~~r~~~i~~Lw~~--~gG~LVlVE~Gtp~ 147 (400)
++ ..++||+|+++++|+++++.. .+++++.+. +||.|++.+++...
T Consensus 90 ~~-~~~~fD~v~~~~~l~~~~~~~---~~l~~~~~~L~pgG~l~~~~~~~~~ 137 (259)
T 2p35_A 90 WK-PAQKADLLYANAVFQWVPDHL---AVLSQLMDQLESGGVLAVQMPDNLQ 137 (259)
T ss_dssp CC-CSSCEEEEEEESCGGGSTTHH---HHHHHHGGGEEEEEEEEEEEECCTT
T ss_pred cC-ccCCcCEEEEeCchhhCCCHH---HHHHHHHHhcCCCeEEEEEeCCCCC
Confidence 33 456899999999999997544 455555543 89999999986643
|
| >2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18 | Back alignment and structure |
|---|
Probab=99.15 E-value=9.5e-11 Score=111.95 Aligned_cols=120 Identities=16% Similarity=0.194 Sum_probs=82.6
Q ss_pred HHHHHHHHHC----CCCCCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCC---CCCceeech
Q 015771 17 LVTESFARRL----PGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK---DLPLIHSYN 89 (400)
Q Consensus 17 ~vL~el~~rl----p~~~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~---~~~~~~~~~ 89 (400)
+.+..+...+ ....+.+|||+|||+|..+..++..++ .+|+++|+|+.|++.++..+.... ++.++..
T Consensus 65 ~~~~~l~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~---~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~-- 139 (297)
T 2o57_A 65 RTDEWLASELAMTGVLQRQAKGLDLGAGYGGAARFLVRKFG---VSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYG-- 139 (297)
T ss_dssp HHHHHHHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHHHC---CEEEEEESCHHHHHHHHHHHHHHTCTTTEEEEEC--
T ss_pred HHHHHHHHHhhhccCCCCCCEEEEeCCCCCHHHHHHHHHhC---CEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEEc--
Confidence 3445555555 223457999999999999988887653 489999999999999988774321 1222211
Q ss_pred hhhHhhhhcccCCCcccEEeecccccCCCCHHHHHHHHHHHHhccCCeEEEEcCCCC
Q 015771 90 SIQALNKDISKSEREHDLVIASYVLGEVPSLQDRITIVRQLWDLTRDVLVLVEPGTP 146 (400)
Q Consensus 90 ~~~~l~~~l~~~~~~~DLVias~~L~eL~~~~~r~~~i~~Lw~~~gG~LVlVE~Gtp 146 (400)
++. .++...++||+|++.++|+++++.......+.++++ |||.|+++++..+
T Consensus 140 ---d~~-~~~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~Lk-pgG~l~~~~~~~~ 191 (297)
T 2o57_A 140 ---SFL-EIPCEDNSYDFIWSQDAFLHSPDKLKVFQECARVLK-PRGVMAITDPMKE 191 (297)
T ss_dssp ---CTT-SCSSCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEE-EEEEEEEEEEEEC
T ss_pred ---Ccc-cCCCCCCCEeEEEecchhhhcCCHHHHHHHHHHHcC-CCeEEEEEEeccC
Confidence 222 234456789999999999999875443444444442 8999999987544
|
| >3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A* | Back alignment and structure |
|---|
Probab=99.15 E-value=3.2e-10 Score=108.85 Aligned_cols=121 Identities=12% Similarity=0.119 Sum_probs=87.3
Q ss_pred HHHHHHHHHCCCCCCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCC---CCCceeechhhhH
Q 015771 17 LVTESFARRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK---DLPLIHSYNSIQA 93 (400)
Q Consensus 17 ~vL~el~~rlp~~~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~---~~~~~~~~~~~~~ 93 (400)
+.+..+...++.-.+.+|||+|||+|..+..+++.++ .+|+++|.|+.|++.|++.+.... ++.++.. +
T Consensus 59 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~---~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~-----d 130 (302)
T 3hem_A 59 AKRKLALDKLNLEPGMTLLDIGCGWGSTMRHAVAEYD---VNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQ-----G 130 (302)
T ss_dssp HHHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHHHC---CEEEEEECCHHHHHHHHHHHHHSCCSSCEEEEEC-----C
T ss_pred HHHHHHHHHcCCCCcCEEEEeeccCcHHHHHHHHhCC---CEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEC-----C
Confidence 3455556555433456999999999999988887765 589999999999999999876532 1212211 2
Q ss_pred hhhhcccCCCcccEEeecccccCCCCH------HHHHHHHHHHHhc--cCCeEEEEcCCCCCch
Q 015771 94 LNKDISKSEREHDLVIASYVLGEVPSL------QDRITIVRQLWDL--TRDVLVLVEPGTPQGS 149 (400)
Q Consensus 94 l~~~l~~~~~~~DLVias~~L~eL~~~------~~r~~~i~~Lw~~--~gG~LVlVE~Gtp~Gf 149 (400)
+. .+ .++||+|++..+|++++++ .....+++++.+. |||.|+|.+...+...
T Consensus 131 ~~-~~---~~~fD~v~~~~~~~~~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~ 190 (302)
T 3hem_A 131 WE-EF---DEPVDRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHTITIPDKE 190 (302)
T ss_dssp GG-GC---CCCCSEEEEESCGGGTTCCSSCCCTTHHHHHHHHHHHSSCTTCEEEEEEEECCCHH
T ss_pred HH-Hc---CCCccEEEEcchHHhcCccccccchhHHHHHHHHHHHhcCCCcEEEEEEEeccCcc
Confidence 22 12 5789999999999999654 4455667766654 8999999988766543
|
| >3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A | Back alignment and structure |
|---|
Probab=99.14 E-value=1.4e-10 Score=105.78 Aligned_cols=105 Identities=19% Similarity=0.233 Sum_probs=74.0
Q ss_pred CCCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCC-------CCCceeechhhhHhhhhcccC
Q 015771 29 FSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK-------DLPLIHSYNSIQALNKDISKS 101 (400)
Q Consensus 29 ~~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~-------~~~~~~~~~~~~~l~~~l~~~ 101 (400)
..+.+|||+|||+|..+..++...+ ..+|+++|.|+.|++.+++.+.... ++.++.. ++. ..+..
T Consensus 28 ~~~~~vLDiGcG~G~~~~~l~~~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~-----d~~-~~~~~ 99 (219)
T 3jwg_A 28 VNAKKVIDLGCGEGNLLSLLLKDKS--FEQITGVDVSYSVLERAKDRLKIDRLPEMQRKRISLFQS-----SLV-YRDKR 99 (219)
T ss_dssp TTCCEEEEETCTTCHHHHHHHTSTT--CCEEEEEESCHHHHHHHHHHHTGGGSCHHHHTTEEEEEC-----CSS-SCCGG
T ss_pred cCCCEEEEecCCCCHHHHHHHhcCC--CCEEEEEECCHHHHHHHHHHHHhhccccccCcceEEEeC-----ccc-ccccc
Confidence 3457999999999999988886543 2689999999999999998875421 1222211 121 12223
Q ss_pred CCcccEEeecccccCCCCHHHHHHHHHHHHhc--cCCeEEEEc
Q 015771 102 EREHDLVIASYVLGEVPSLQDRITIVRQLWDL--TRDVLVLVE 142 (400)
Q Consensus 102 ~~~~DLVias~~L~eL~~~~~r~~~i~~Lw~~--~gG~LVlVE 142 (400)
.++||+|++..+|++++ ..+...+++++.+. +||.+|++.
T Consensus 100 ~~~fD~V~~~~~l~~~~-~~~~~~~l~~~~~~LkpgG~~i~~~ 141 (219)
T 3jwg_A 100 FSGYDAATVIEVIEHLD-ENRLQAFEKVLFEFTRPQTVIVSTP 141 (219)
T ss_dssp GTTCSEEEEESCGGGCC-HHHHHHHHHHHHTTTCCSEEEEEEE
T ss_pred cCCCCEEEEHHHHHhCC-HHHHHHHHHHHHHhhCCCEEEEEcc
Confidence 46899999999999996 44556677777664 788655543
|
| >1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21 | Back alignment and structure |
|---|
Probab=99.14 E-value=8.7e-11 Score=109.41 Aligned_cols=114 Identities=12% Similarity=0.108 Sum_probs=79.9
Q ss_pred HHHHHHHHCCCCCCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCC---CCCceeechhhhHh
Q 015771 18 VTESFARRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK---DLPLIHSYNSIQAL 94 (400)
Q Consensus 18 vL~el~~rlp~~~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~---~~~~~~~~~~~~~l 94 (400)
.+..+...++...+.+|||+|||+|..+..++..++ .+++++|.|+.|++.++..+.... ++.++.. ++
T Consensus 24 ~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~la~~~~---~~v~gvD~s~~~l~~a~~~~~~~~~~~~v~~~~~-----d~ 95 (256)
T 1nkv_A 24 KYATLGRVLRMKPGTRILDLGSGSGEMLCTWARDHG---ITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHN-----DA 95 (256)
T ss_dssp HHHHHHHHTCCCTTCEEEEETCTTCHHHHHHHHHTC---CEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEES-----CC
T ss_pred HHHHHHHhcCCCCCCEEEEECCCCCHHHHHHHHhcC---CeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEEC-----Ch
Confidence 344455555444457999999999999988887663 489999999999999998875432 2222221 22
Q ss_pred hhhcccCCCcccEEeecccccCCCCHHHHHHHHHHHHhc--cCCeEEEEcCC
Q 015771 95 NKDISKSEREHDLVIASYVLGEVPSLQDRITIVRQLWDL--TRDVLVLVEPG 144 (400)
Q Consensus 95 ~~~l~~~~~~~DLVias~~L~eL~~~~~r~~~i~~Lw~~--~gG~LVlVE~G 144 (400)
. .++. .++||+|++..+++++++.. .+++++.+. |||.|++.++.
T Consensus 96 ~-~~~~-~~~fD~V~~~~~~~~~~~~~---~~l~~~~r~LkpgG~l~~~~~~ 142 (256)
T 1nkv_A 96 A-GYVA-NEKCDVAACVGATWIAGGFA---GAEELLAQSLKPGGIMLIGEPY 142 (256)
T ss_dssp T-TCCC-SSCEEEEEEESCGGGTSSSH---HHHHHHTTSEEEEEEEEEEEEE
T ss_pred H-hCCc-CCCCCEEEECCChHhcCCHH---HHHHHHHHHcCCCeEEEEecCc
Confidence 2 2233 57899999999999987543 445555543 89999998864
|
| >3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.14 E-value=3.9e-10 Score=106.86 Aligned_cols=111 Identities=17% Similarity=0.150 Sum_probs=78.8
Q ss_pred HHHHCCCCCCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCCCCceeechhhhHhhhhcccC
Q 015771 22 FARRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDISKS 101 (400)
Q Consensus 22 l~~rlp~~~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~~~~~~~~~~~~~l~~~l~~~ 101 (400)
+...++...+.+|||+|||+|..+..+++ ...+|+++|+|+.|++.++..+. ++.++.. ++. .++.
T Consensus 49 l~~~l~~~~~~~vLDiGcG~G~~~~~l~~----~~~~v~gvD~s~~~~~~a~~~~~---~~~~~~~-----d~~-~~~~- 114 (279)
T 3ccf_A 49 LLQLLNPQPGEFILDLGCGTGQLTEKIAQ----SGAEVLGTDNAATMIEKARQNYP---HLHFDVA-----DAR-NFRV- 114 (279)
T ss_dssp HHHHHCCCTTCEEEEETCTTSHHHHHHHH----TTCEEEEEESCHHHHHHHHHHCT---TSCEEEC-----CTT-TCCC-
T ss_pred HHHHhCCCCCCEEEEecCCCCHHHHHHHh----CCCeEEEEECCHHHHHHHHhhCC---CCEEEEC-----Chh-hCCc-
Confidence 33334334557999999999999988886 24589999999999999988762 3333322 122 2332
Q ss_pred CCcccEEeecccccCCCCHHHHHHHHHHHHhccCCeEEEEcCCCCC
Q 015771 102 EREHDLVIASYVLGEVPSLQDRITIVRQLWDLTRDVLVLVEPGTPQ 147 (400)
Q Consensus 102 ~~~~DLVias~~L~eL~~~~~r~~~i~~Lw~~~gG~LVlVE~Gtp~ 147 (400)
.++||+|++.++|+++++......-+.++++ |||.|++..++...
T Consensus 115 ~~~fD~v~~~~~l~~~~d~~~~l~~~~~~Lk-pgG~l~~~~~~~~~ 159 (279)
T 3ccf_A 115 DKPLDAVFSNAMLHWVKEPEAAIASIHQALK-SGGRFVAEFGGKGN 159 (279)
T ss_dssp SSCEEEEEEESCGGGCSCHHHHHHHHHHHEE-EEEEEEEEEECTTT
T ss_pred CCCcCEEEEcchhhhCcCHHHHHHHHHHhcC-CCcEEEEEecCCcc
Confidence 4689999999999999876544444445543 79999998886544
|
| >3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=99.14 E-value=1.3e-10 Score=104.92 Aligned_cols=120 Identities=12% Similarity=0.101 Sum_probs=81.0
Q ss_pred HHHHHHHCCCCCCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCCCCceeechhhhHhhhhc
Q 015771 19 TESFARRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDI 98 (400)
Q Consensus 19 L~el~~rlp~~~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~~~~~~~~~~~~~l~~~l 98 (400)
...+.+.++ .++.+|||+|||+|..+..++.. + ..+++++|.|+.|++.++..+........+... ..++. .+
T Consensus 33 ~~~~~~~~~-~~~~~vLdiG~G~G~~~~~l~~~-~--~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~--~~d~~-~~ 105 (219)
T 3dlc_A 33 AENIINRFG-ITAGTCIDIGSGPGALSIALAKQ-S--DFSIRALDFSKHMNEIALKNIADANLNDRIQIV--QGDVH-NI 105 (219)
T ss_dssp HHHHHHHHC-CCEEEEEEETCTTSHHHHHHHHH-S--EEEEEEEESCHHHHHHHHHHHHHTTCTTTEEEE--ECBTT-BC
T ss_pred HHHHHHhcC-CCCCEEEEECCCCCHHHHHHHHc-C--CCeEEEEECCHHHHHHHHHHHHhccccCceEEE--EcCHH-HC
Confidence 344444444 34459999999999999888865 2 368999999999999999987653211111110 11122 23
Q ss_pred ccCCCcccEEeecccccCCCCHHHHHHHHHHHHhccCCeEEEEcCCCC
Q 015771 99 SKSEREHDLVIASYVLGEVPSLQDRITIVRQLWDLTRDVLVLVEPGTP 146 (400)
Q Consensus 99 ~~~~~~~DLVias~~L~eL~~~~~r~~~i~~Lw~~~gG~LVlVE~Gtp 146 (400)
+...++||+|++.++|+++++.......+.++++ +||.|++.++-..
T Consensus 106 ~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~-pgG~l~~~~~~~~ 152 (219)
T 3dlc_A 106 PIEDNYADLIVSRGSVFFWEDVATAFREIYRILK-SGGKTYIGGGFGN 152 (219)
T ss_dssp SSCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEE-EEEEEEEEECCSS
T ss_pred CCCcccccEEEECchHhhccCHHHHHHHHHHhCC-CCCEEEEEeccCc
Confidence 3445789999999999999766554444444443 7999999875443
|
| >2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A* | Back alignment and structure |
|---|
Probab=99.13 E-value=1.6e-10 Score=103.10 Aligned_cols=115 Identities=15% Similarity=0.154 Sum_probs=81.0
Q ss_pred HHHHHCCCCCCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCC--CCCceeechhhhHhhhhc
Q 015771 21 SFARRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK--DLPLIHSYNSIQALNKDI 98 (400)
Q Consensus 21 el~~rlp~~~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~--~~~~~~~~~~~~~l~~~l 98 (400)
.+...++...+.+|||+|||+|..+..++.. ..+++++|.|+.|++.++..+.... ++.++.. ++. .+
T Consensus 23 ~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~----~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~-----d~~-~~ 92 (199)
T 2xvm_A 23 EVLEAVKVVKPGKTLDLGCGNGRNSLYLAAN----GYDVDAWDKNAMSIANVERIKSIENLDNLHTRVV-----DLN-NL 92 (199)
T ss_dssp HHHHHTTTSCSCEEEEETCTTSHHHHHHHHT----TCEEEEEESCHHHHHHHHHHHHHHTCTTEEEEEC-----CGG-GC
T ss_pred HHHHHhhccCCCeEEEEcCCCCHHHHHHHHC----CCeEEEEECCHHHHHHHHHHHHhCCCCCcEEEEc-----chh-hC
Confidence 3334444445689999999999998887753 3589999999999999998775321 2222221 222 12
Q ss_pred ccCCCcccEEeecccccCCCCHHHHHHHHHHHHhc--cCCeEEEEcCCCCC
Q 015771 99 SKSEREHDLVIASYVLGEVPSLQDRITIVRQLWDL--TRDVLVLVEPGTPQ 147 (400)
Q Consensus 99 ~~~~~~~DLVias~~L~eL~~~~~r~~~i~~Lw~~--~gG~LVlVE~Gtp~ 147 (400)
+. .++||+|++.++|++++ ......+++++.+. +||.|++++...+.
T Consensus 93 ~~-~~~~D~v~~~~~l~~~~-~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~ 141 (199)
T 2xvm_A 93 TF-DRQYDFILSTVVLMFLE-AKTIPGLIANMQRCTKPGGYNLIVAAMDTA 141 (199)
T ss_dssp CC-CCCEEEEEEESCGGGSC-GGGHHHHHHHHHHTEEEEEEEEEEEEBCCS
T ss_pred CC-CCCceEEEEcchhhhCC-HHHHHHHHHHHHHhcCCCeEEEEEEeeccC
Confidence 33 57899999999999996 44556677777664 89999998865543
|
| >3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis} | Back alignment and structure |
|---|
Probab=99.13 E-value=2.2e-10 Score=105.64 Aligned_cols=116 Identities=19% Similarity=0.269 Sum_probs=80.8
Q ss_pred HHHHHHHHCCCCCCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCCCCceeechhhhHhhhh
Q 015771 18 VTESFARRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKD 97 (400)
Q Consensus 18 vL~el~~rlp~~~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~~~~~~~~~~~~~l~~~ 97 (400)
++..+...++ .+.+|||+|||+|..+..++.. ..+|+++|+|+.|++.++..... .++.++.. ++. .
T Consensus 43 ~~~~l~~~~~--~~~~vLDiG~G~G~~~~~l~~~----~~~v~~vD~s~~~~~~a~~~~~~-~~~~~~~~-----d~~-~ 109 (242)
T 3l8d_A 43 IIPFFEQYVK--KEAEVLDVGCGDGYGTYKLSRT----GYKAVGVDISEVMIQKGKERGEG-PDLSFIKG-----DLS-S 109 (242)
T ss_dssp HHHHHHHHSC--TTCEEEEETCTTSHHHHHHHHT----TCEEEEEESCHHHHHHHHTTTCB-TTEEEEEC-----BTT-B
T ss_pred HHHHHHHHcC--CCCeEEEEcCCCCHHHHHHHHc----CCeEEEEECCHHHHHHHHhhccc-CCceEEEc-----chh-c
Confidence 3444555444 3579999999999998888754 35899999999999999887522 22222221 122 2
Q ss_pred cccCCCcccEEeecccccCCCCHHHHHHHHHHHHhccCCeEEEEcCCCCC
Q 015771 98 ISKSEREHDLVIASYVLGEVPSLQDRITIVRQLWDLTRDVLVLVEPGTPQ 147 (400)
Q Consensus 98 l~~~~~~~DLVias~~L~eL~~~~~r~~~i~~Lw~~~gG~LVlVE~Gtp~ 147 (400)
++...++||+|++.++|+++++.......+.++++ +||.|+|..++...
T Consensus 110 ~~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~-pgG~l~i~~~~~~~ 158 (242)
T 3l8d_A 110 LPFENEQFEAIMAINSLEWTEEPLRALNEIKRVLK-SDGYACIAILGPTA 158 (242)
T ss_dssp CSSCTTCEEEEEEESCTTSSSCHHHHHHHHHHHEE-EEEEEEEEEECTTC
T ss_pred CCCCCCCccEEEEcChHhhccCHHHHHHHHHHHhC-CCeEEEEEEcCCcc
Confidence 33346789999999999999876544444445443 79999999875443
|
| >1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A* | Back alignment and structure |
|---|
Probab=99.13 E-value=4.4e-10 Score=106.76 Aligned_cols=121 Identities=12% Similarity=0.082 Sum_probs=82.5
Q ss_pred HHHHHHHHHCCCCCCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCCCCceeechhhhHhhh
Q 015771 17 LVTESFARRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNK 96 (400)
Q Consensus 17 ~vL~el~~rlp~~~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~~~~~~~~~~~~~l~~ 96 (400)
+.+..+...++...+.+|||+|||+|..+..+++.++ .+|+++|.|+.|++.++..+........+... ..++.
T Consensus 51 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~---~~v~gvd~s~~~~~~a~~~~~~~~~~~~~~~~--~~d~~- 124 (287)
T 1kpg_A 51 AKIDLALGKLGLQPGMTLLDVGCGWGATMMRAVEKYD---VNVVGLTLSKNQANHVQQLVANSENLRSKRVL--LAGWE- 124 (287)
T ss_dssp HHHHHHHTTTTCCTTCEEEEETCTTSHHHHHHHHHHC---CEEEEEESCHHHHHHHHHHHHTCCCCSCEEEE--ESCGG-
T ss_pred HHHHHHHHHcCCCCcCEEEEECCcccHHHHHHHHHcC---CEEEEEECCHHHHHHHHHHHHhcCCCCCeEEE--ECChh-
Confidence 4555666665544557999999999999888876554 38999999999999999988654211111110 11222
Q ss_pred hcccCCCcccEEeecccccCCCCHHHHHHHHHHHHh--ccCCeEEEEcCCCCC
Q 015771 97 DISKSEREHDLVIASYVLGEVPSLQDRITIVRQLWD--LTRDVLVLVEPGTPQ 147 (400)
Q Consensus 97 ~l~~~~~~~DLVias~~L~eL~~~~~r~~~i~~Lw~--~~gG~LVlVE~Gtp~ 147 (400)
.++ ++||+|++..+|++++. .....+++++.+ +|||.|++.++..+.
T Consensus 125 ~~~---~~fD~v~~~~~l~~~~~-~~~~~~l~~~~~~LkpgG~l~~~~~~~~~ 173 (287)
T 1kpg_A 125 QFD---EPVDRIVSIGAFEHFGH-ERYDAFFSLAHRLLPADGVMLLHTITGLH 173 (287)
T ss_dssp GCC---CCCSEEEEESCGGGTCT-TTHHHHHHHHHHHSCTTCEEEEEEEEECC
T ss_pred hCC---CCeeEEEEeCchhhcCh-HHHHHHHHHHHHhcCCCCEEEEEEecCCC
Confidence 222 68999999999999952 223344444443 389999999886554
|
| >3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.13 E-value=1.3e-10 Score=111.35 Aligned_cols=118 Identities=12% Similarity=0.121 Sum_probs=81.4
Q ss_pred HHHHHHHHCCCCCCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCC----CCCCceeechhhhH
Q 015771 18 VTESFARRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGP----KDLPLIHSYNSIQA 93 (400)
Q Consensus 18 vL~el~~rlp~~~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~----~~~~~~~~~~~~~~ 93 (400)
++..|..... -.+.+|||+|||+|..+..+++.++ ...+|+++|+|+.|++.|+..+... .++.++.. +
T Consensus 25 ~~~~l~~~~~-~~~~~vLDiGcG~G~~~~~la~~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~v~~~~~-----d 97 (299)
T 3g5t_A 25 FYKMIDEYHD-GERKLLVDVGCGPGTATLQMAQELK-PFEQIIGSDLSATMIKTAEVIKEGSPDTYKNVSFKIS-----S 97 (299)
T ss_dssp HHHHHHHHCC-SCCSEEEEETCTTTHHHHHHHHHSS-CCSEEEEEESCHHHHHHHHHHHHHCC-CCTTEEEEEC-----C
T ss_pred HHHHHHHHhc-CCCCEEEEECCCCCHHHHHHHHhCC-CCCEEEEEeCCHHHHHHHHHHHHhccCCCCceEEEEc-----C
Confidence 3444444433 2458999999999999999988763 3578999999999999999987543 12222221 1
Q ss_pred hhhhcccCC------CcccEEeecccccCCCCHHHHHHHHHHHHhccCCeEEEEcCCC
Q 015771 94 LNKDISKSE------REHDLVIASYVLGEVPSLQDRITIVRQLWDLTRDVLVLVEPGT 145 (400)
Q Consensus 94 l~~~l~~~~------~~~DLVias~~L~eL~~~~~r~~~i~~Lw~~~gG~LVlVE~Gt 145 (400)
+. .++... ++||+|+++++|+++ +.......+.++++ +||.|++++.+.
T Consensus 98 ~~-~~~~~~~~~~~~~~fD~V~~~~~l~~~-~~~~~l~~~~~~Lk-pgG~l~i~~~~~ 152 (299)
T 3g5t_A 98 SD-DFKFLGADSVDKQKIDMITAVECAHWF-DFEKFQRSAYANLR-KDGTIAIWGYAD 152 (299)
T ss_dssp TT-CCGGGCTTTTTSSCEEEEEEESCGGGS-CHHHHHHHHHHHEE-EEEEEEEEEEEE
T ss_pred HH-hCCccccccccCCCeeEEeHhhHHHHh-CHHHHHHHHHHhcC-CCcEEEEEecCC
Confidence 21 122223 689999999999999 66555555555553 799999965543
|
| >1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A* | Back alignment and structure |
|---|
Probab=99.13 E-value=2.4e-10 Score=106.01 Aligned_cols=109 Identities=17% Similarity=0.305 Sum_probs=79.0
Q ss_pred CCCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCC--CCCCceeechhhhHhhhhcccCCCccc
Q 015771 29 FSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGP--KDLPLIHSYNSIQALNKDISKSEREHD 106 (400)
Q Consensus 29 ~~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~--~~~~~~~~~~~~~~l~~~l~~~~~~~D 106 (400)
-.+.+|||+|||+|..+..++... .+|+++|.|+.|++.++..+... .++.++.. ++. .++...++||
T Consensus 20 ~~~~~vLDiGcG~G~~~~~l~~~~----~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~-----d~~-~~~~~~~~fD 89 (239)
T 1xxl_A 20 RAEHRVLDIGAGAGHTALAFSPYV----QECIGVDATKEMVEVASSFAQEKGVENVRFQQG-----TAE-SLPFPDDSFD 89 (239)
T ss_dssp CTTCEEEEESCTTSHHHHHHGGGS----SEEEEEESCHHHHHHHHHHHHHHTCCSEEEEEC-----BTT-BCCSCTTCEE
T ss_pred CCCCEEEEEccCcCHHHHHHHHhC----CEEEEEECCHHHHHHHHHHHHHcCCCCeEEEec-----ccc-cCCCCCCcEE
Confidence 345799999999999988887543 48999999999999998877532 12222221 122 2344557899
Q ss_pred EEeecccccCCCCHHHHHHHHHHHHhccCCeEEEEcCCCCCc
Q 015771 107 LVIASYVLGEVPSLQDRITIVRQLWDLTRDVLVLVEPGTPQG 148 (400)
Q Consensus 107 LVias~~L~eL~~~~~r~~~i~~Lw~~~gG~LVlVE~Gtp~G 148 (400)
+|++.++++++++.......+.++++ +||.|+++++..+..
T Consensus 90 ~v~~~~~l~~~~~~~~~l~~~~~~Lk-pgG~l~~~~~~~~~~ 130 (239)
T 1xxl_A 90 IITCRYAAHHFSDVRKAVREVARVLK-QDGRFLLVDHYAPED 130 (239)
T ss_dssp EEEEESCGGGCSCHHHHHHHHHHHEE-EEEEEEEEEECBCSS
T ss_pred EEEECCchhhccCHHHHHHHHHHHcC-CCcEEEEEEcCCCCC
Confidence 99999999999876554444455543 799999999877655
|
| >3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A | Back alignment and structure |
|---|
Probab=99.12 E-value=1.6e-10 Score=110.13 Aligned_cols=115 Identities=15% Similarity=0.250 Sum_probs=82.2
Q ss_pred HHHHHHHCCC-CCCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCC-CCCceeechhhhHhhh
Q 015771 19 TESFARRLPG-FSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK-DLPLIHSYNSIQALNK 96 (400)
Q Consensus 19 L~el~~rlp~-~~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~-~~~~~~~~~~~~~l~~ 96 (400)
+..+...+.. .++.+|||+|||+|..+..+++.++ ...+|+++|.|+.|++.++..+.... ++.++. .++.
T Consensus 10 ~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~v~~~~-----~d~~- 82 (284)
T 3gu3_A 10 VSFLVNTVWKITKPVHIVDYGCGYGYLGLVLMPLLP-EGSKYTGIDSGETLLAEARELFRLLPYDSEFLE-----GDAT- 82 (284)
T ss_dssp HHHHHHTTSCCCSCCEEEEETCTTTHHHHHHTTTSC-TTCEEEEEESCHHHHHHHHHHHHSSSSEEEEEE-----SCTT-
T ss_pred HHHHHHHHhccCCCCeEEEecCCCCHHHHHHHHhCC-CCCEEEEEECCHHHHHHHHHHHHhcCCceEEEE-----cchh-
Confidence 3344444433 3468999999999999999887776 24689999999999999999886543 222221 1222
Q ss_pred hcccCCCcccEEeecccccCCCCHHHHHHHHHHHHhc--cCCeEEEEcCC
Q 015771 97 DISKSEREHDLVIASYVLGEVPSLQDRITIVRQLWDL--TRDVLVLVEPG 144 (400)
Q Consensus 97 ~l~~~~~~~DLVias~~L~eL~~~~~r~~~i~~Lw~~--~gG~LVlVE~G 144 (400)
.++. .++||+|++.++|+++++.. .+++++.+. |||.|+++++.
T Consensus 83 ~~~~-~~~fD~v~~~~~l~~~~~~~---~~l~~~~~~LkpgG~l~~~~~~ 128 (284)
T 3gu3_A 83 EIEL-NDKYDIAICHAFLLHMTTPE---TMLQKMIHSVKKGGKIICFEPH 128 (284)
T ss_dssp TCCC-SSCEEEEEEESCGGGCSSHH---HHHHHHHHTEEEEEEEEEEECC
T ss_pred hcCc-CCCeeEEEECChhhcCCCHH---HHHHHHHHHcCCCCEEEEEecc
Confidence 2332 46899999999999998765 444444443 89999999987
|
| >3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.12 E-value=1.2e-10 Score=109.59 Aligned_cols=112 Identities=19% Similarity=0.197 Sum_probs=80.0
Q ss_pred HHHHHHHHCCCCCCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCCCCceeechhhhHhhhh
Q 015771 18 VTESFARRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKD 97 (400)
Q Consensus 18 vL~el~~rlp~~~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~~~~~~~~~~~~~l~~~ 97 (400)
+...+...++...+.+|||+|||+|..+..+++ ...+|+++|+|+.|++.++... ++.++.. ++. .
T Consensus 22 ~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~----~~~~v~gvD~s~~~~~~a~~~~----~~~~~~~-----d~~-~ 87 (261)
T 3ege_A 22 IVNAIINLLNLPKGSVIADIGAGTGGYSVALAN----QGLFVYAVEPSIVMRQQAVVHP----QVEWFTG-----YAE-N 87 (261)
T ss_dssp HHHHHHHHHCCCTTCEEEEETCTTSHHHHHHHT----TTCEEEEECSCHHHHHSSCCCT----TEEEECC-----CTT-S
T ss_pred HHHHHHHHhCCCCCCEEEEEcCcccHHHHHHHh----CCCEEEEEeCCHHHHHHHHhcc----CCEEEEC-----chh-h
Confidence 445555555544568999999999999988874 3469999999999988765543 2222221 222 2
Q ss_pred cccCCCcccEEeecccccCCCCHHHHHHHHHHHHhccCCeEEEEcCCC
Q 015771 98 ISKSEREHDLVIASYVLGEVPSLQDRITIVRQLWDLTRDVLVLVEPGT 145 (400)
Q Consensus 98 l~~~~~~~DLVias~~L~eL~~~~~r~~~i~~Lw~~~gG~LVlVE~Gt 145 (400)
++...++||+|++.++|+++++.......+.+++ + ||.+++++...
T Consensus 88 ~~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L-k-gG~~~~~~~~~ 133 (261)
T 3ege_A 88 LALPDKSVDGVISILAIHHFSHLEKSFQEMQRII-R-DGTIVLLTFDI 133 (261)
T ss_dssp CCSCTTCBSEEEEESCGGGCSSHHHHHHHHHHHB-C-SSCEEEEEECG
T ss_pred CCCCCCCEeEEEEcchHhhccCHHHHHHHHHHHh-C-CcEEEEEEcCC
Confidence 3445678999999999999987766555666666 4 89999998753
|
| >3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.12 E-value=1.1e-10 Score=106.08 Aligned_cols=110 Identities=15% Similarity=0.201 Sum_probs=77.6
Q ss_pred CCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCC--CCCceeechhhhHhhhhcccCCCcccE
Q 015771 30 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK--DLPLIHSYNSIQALNKDISKSEREHDL 107 (400)
Q Consensus 30 ~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~--~~~~~~~~~~~~~l~~~l~~~~~~~DL 107 (400)
.+.+|||+|||+|..+..++...+ ...+|+++|.|+.|++.++..+.... ++.++.. ++. .++...++||+
T Consensus 37 ~~~~vLDiG~G~G~~~~~l~~~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~-----d~~-~~~~~~~~fD~ 109 (219)
T 3dh0_A 37 EGMTVLDVGTGAGFYLPYLSKMVG-EKGKVYAIDVQEEMVNYAWEKVNKLGLKNVEVLKS-----EEN-KIPLPDNTVDF 109 (219)
T ss_dssp TTCEEEESSCTTCTTHHHHHHHHT-TTCEEEEEESCHHHHHHHHHHHHHHTCTTEEEEEC-----BTT-BCSSCSSCEEE
T ss_pred CCCEEEEEecCCCHHHHHHHHHhC-CCcEEEEEECCHHHHHHHHHHHHHcCCCcEEEEec-----ccc-cCCCCCCCeeE
Confidence 457999999999999888887763 23589999999999999998875421 2222221 121 23334578999
Q ss_pred EeecccccCCCCHHHHHHHHHHHHhccCCeEEEEcCCCCC
Q 015771 108 VIASYVLGEVPSLQDRITIVRQLWDLTRDVLVLVEPGTPQ 147 (400)
Q Consensus 108 Vias~~L~eL~~~~~r~~~i~~Lw~~~gG~LVlVE~Gtp~ 147 (400)
|+++++|+++++.......+.++++ +||.+++++.....
T Consensus 110 v~~~~~l~~~~~~~~~l~~~~~~Lk-pgG~l~i~~~~~~~ 148 (219)
T 3dh0_A 110 IFMAFTFHELSEPLKFLEELKRVAK-PFAYLAIIDWKKEE 148 (219)
T ss_dssp EEEESCGGGCSSHHHHHHHHHHHEE-EEEEEEEEEECSSC
T ss_pred EEeehhhhhcCCHHHHHHHHHHHhC-CCeEEEEEEecccc
Confidence 9999999999765444444444442 79999999865443
|
| >2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42 | Back alignment and structure |
|---|
Probab=99.12 E-value=1.4e-10 Score=107.59 Aligned_cols=120 Identities=17% Similarity=0.240 Sum_probs=79.4
Q ss_pred HHHHHHHHHCCCC-CCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCC--CCCceeechhhhH
Q 015771 17 LVTESFARRLPGF-SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK--DLPLIHSYNSIQA 93 (400)
Q Consensus 17 ~vL~el~~rlp~~-~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~--~~~~~~~~~~~~~ 93 (400)
..+..+...++.. .+.+|||+|||+|..+..++... ..+|+++|.|+.|++.++..+.... ++.++. .+
T Consensus 65 ~~~~~l~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~---~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~-----~d 136 (241)
T 2ex4_A 65 KFLQRFLREGPNKTGTSCALDCGAGIGRITKRLLLPL---FREVDMVDITEDFLVQAKTYLGEEGKRVRNYFC-----CG 136 (241)
T ss_dssp HHHHGGGC----CCCCSEEEEETCTTTHHHHHTTTTT---CSEEEEEESCHHHHHHHHHHTGGGGGGEEEEEE-----CC
T ss_pred HHHHHHHHhcccCCCCCEEEEECCCCCHHHHHHHHhc---CCEEEEEeCCHHHHHHHHHHhhhcCCceEEEEE-----cC
Confidence 3444444433322 35799999999999988766433 3589999999999999998876431 111111 12
Q ss_pred hhhhcccCCCcccEEeecccccCCCCHHHHHHHHHHHHhc--cCCeEEEEcCCCC
Q 015771 94 LNKDISKSEREHDLVIASYVLGEVPSLQDRITIVRQLWDL--TRDVLVLVEPGTP 146 (400)
Q Consensus 94 l~~~l~~~~~~~DLVias~~L~eL~~~~~r~~~i~~Lw~~--~gG~LVlVE~Gtp 146 (400)
+. .++...++||+|++.++|+++++ .....+++++.+. +||.|++.++..+
T Consensus 137 ~~-~~~~~~~~fD~v~~~~~l~~~~~-~~~~~~l~~~~~~LkpgG~l~i~~~~~~ 189 (241)
T 2ex4_A 137 LQ-DFTPEPDSYDVIWIQWVIGHLTD-QHLAEFLRRCKGSLRPNGIIVIKDNMAQ 189 (241)
T ss_dssp GG-GCCCCSSCEEEEEEESCGGGSCH-HHHHHHHHHHHHHEEEEEEEEEEEEEBS
T ss_pred hh-hcCCCCCCEEEEEEcchhhhCCH-HHHHHHHHHHHHhcCCCeEEEEEEccCC
Confidence 22 23334568999999999999974 3445566666553 8999999887443
|
| >2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.11 E-value=4.6e-10 Score=101.49 Aligned_cols=104 Identities=20% Similarity=0.214 Sum_probs=74.3
Q ss_pred CCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCCCCceeechhhhHhhhhcccCCCcccEEe
Q 015771 30 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDISKSEREHDLVI 109 (400)
Q Consensus 30 ~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~~~~~~~~~~~~~l~~~l~~~~~~~DLVi 109 (400)
.+.+|||+|||+|..+..+ + ..+++++|.|+.|++.+++.+. ++.++.. ++. .++...++||+|+
T Consensus 36 ~~~~vLdiG~G~G~~~~~l----~--~~~v~~vD~s~~~~~~a~~~~~---~~~~~~~-----d~~-~~~~~~~~fD~v~ 100 (211)
T 2gs9_A 36 PGESLLEVGAGTGYWLRRL----P--YPQKVGVEPSEAMLAVGRRRAP---EATWVRA-----WGE-ALPFPGESFDVVL 100 (211)
T ss_dssp CCSEEEEETCTTCHHHHHC----C--CSEEEEECCCHHHHHHHHHHCT---TSEEECC-----CTT-SCCSCSSCEEEEE
T ss_pred CCCeEEEECCCCCHhHHhC----C--CCeEEEEeCCHHHHHHHHHhCC---CcEEEEc-----ccc-cCCCCCCcEEEEE
Confidence 5679999999999887665 2 2389999999999999998762 2222221 121 2333456899999
Q ss_pred ecccccCCCCHHHHHHHHHHHHhccCCeEEEEcCCCCCch
Q 015771 110 ASYVLGEVPSLQDRITIVRQLWDLTRDVLVLVEPGTPQGS 149 (400)
Q Consensus 110 as~~L~eL~~~~~r~~~i~~Lw~~~gG~LVlVE~Gtp~Gf 149 (400)
+.++|+++++.......+.++++ +||.|+++.+.....+
T Consensus 101 ~~~~l~~~~~~~~~l~~~~~~L~-pgG~l~i~~~~~~~~~ 139 (211)
T 2gs9_A 101 LFTTLEFVEDVERVLLEARRVLR-PGGALVVGVLEALSPW 139 (211)
T ss_dssp EESCTTTCSCHHHHHHHHHHHEE-EEEEEEEEEECTTSHH
T ss_pred EcChhhhcCCHHHHHHHHHHHcC-CCCEEEEEecCCcCcH
Confidence 99999999866544444444443 7999999988665444
|
| >2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A | Back alignment and structure |
|---|
Probab=99.11 E-value=5.3e-10 Score=104.20 Aligned_cols=101 Identities=14% Similarity=0.161 Sum_probs=71.6
Q ss_pred CCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCC-CCCCceeechhhhHhhhhcccCCCcccEE
Q 015771 30 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGP-KDLPLIHSYNSIQALNKDISKSEREHDLV 108 (400)
Q Consensus 30 ~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~-~~~~~~~~~~~~~~l~~~l~~~~~~~DLV 108 (400)
.+.+|||+|||+|..+..++.. ..+|+++|.|+.|++.++..+... .++.++.. +.. .++...++||+|
T Consensus 39 ~~~~vLDiG~G~G~~~~~l~~~----~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~-----d~~-~~~~~~~~fD~v 108 (263)
T 2yqz_A 39 EEPVFLELGVGTGRIALPLIAR----GYRYIALDADAAMLEVFRQKIAGVDRKVQVVQA-----DAR-AIPLPDESVHGV 108 (263)
T ss_dssp SCCEEEEETCTTSTTHHHHHTT----TCEEEEEESCHHHHHHHHHHTTTSCTTEEEEES-----CTT-SCCSCTTCEEEE
T ss_pred CCCEEEEeCCcCCHHHHHHHHC----CCEEEEEECCHHHHHHHHHHhhccCCceEEEEc-----ccc-cCCCCCCCeeEE
Confidence 3579999999999998887743 468999999999999999887221 12222221 222 233345789999
Q ss_pred eecccccCCCCHHHHHHHHHHHHhccCCeEEEE
Q 015771 109 IASYVLGEVPSLQDRITIVRQLWDLTRDVLVLV 141 (400)
Q Consensus 109 ias~~L~eL~~~~~r~~~i~~Lw~~~gG~LVlV 141 (400)
++.++|+++++.......+.++++ +||.|+++
T Consensus 109 ~~~~~l~~~~~~~~~l~~~~~~L~-pgG~l~~~ 140 (263)
T 2yqz_A 109 IVVHLWHLVPDWPKVLAEAIRVLK-PGGALLEG 140 (263)
T ss_dssp EEESCGGGCTTHHHHHHHHHHHEE-EEEEEEEE
T ss_pred EECCchhhcCCHHHHHHHHHHHCC-CCcEEEEE
Confidence 999999999865444444444443 79999988
|
| >3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti} | Back alignment and structure |
|---|
Probab=99.11 E-value=3.1e-10 Score=104.55 Aligned_cols=112 Identities=17% Similarity=0.184 Sum_probs=78.6
Q ss_pred HHHHHCCCCCCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCCCCceeechhhhHhhhhccc
Q 015771 21 SFARRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDISK 100 (400)
Q Consensus 21 el~~rlp~~~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~~~~~~~~~~~~~l~~~l~~ 100 (400)
.+...++...+.+|||+|||+|..+..++.. + ..+++++|.|+.|++.++..+... ++.++.. ++. .++.
T Consensus 34 ~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~-~--~~~v~~vD~s~~~~~~a~~~~~~~-~~~~~~~-----d~~-~~~~ 103 (243)
T 3bkw_A 34 ALRAMLPEVGGLRIVDLGCGFGWFCRWAHEH-G--ASYVLGLDLSEKMLARARAAGPDT-GITYERA-----DLD-KLHL 103 (243)
T ss_dssp HHHHHSCCCTTCEEEEETCTTCHHHHHHHHT-T--CSEEEEEESCHHHHHHHHHTSCSS-SEEEEEC-----CGG-GCCC
T ss_pred HHHHhccccCCCEEEEEcCcCCHHHHHHHHC-C--CCeEEEEcCCHHHHHHHHHhcccC-CceEEEc-----Chh-hccC
Confidence 3555555556789999999999998887754 2 238999999999999999877542 2222221 122 1233
Q ss_pred CCCcccEEeecccccCCCCHHHHHHHHHHHHhccCCeEEEEcC
Q 015771 101 SEREHDLVIASYVLGEVPSLQDRITIVRQLWDLTRDVLVLVEP 143 (400)
Q Consensus 101 ~~~~~DLVias~~L~eL~~~~~r~~~i~~Lw~~~gG~LVlVE~ 143 (400)
..++||+|++.++|+++++.......+.++++ +||.|++..+
T Consensus 104 ~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~-pgG~l~~~~~ 145 (243)
T 3bkw_A 104 PQDSFDLAYSSLALHYVEDVARLFRTVHQALS-PGGHFVFSTE 145 (243)
T ss_dssp CTTCEEEEEEESCGGGCSCHHHHHHHHHHHEE-EEEEEEEEEE
T ss_pred CCCCceEEEEeccccccchHHHHHHHHHHhcC-cCcEEEEEeC
Confidence 45789999999999999865544444444443 7999999875
|
| >3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae} | Back alignment and structure |
|---|
Probab=99.11 E-value=8.5e-10 Score=101.31 Aligned_cols=105 Identities=16% Similarity=0.228 Sum_probs=78.3
Q ss_pred CCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCCCCceeechhhhHhhhhcccCCCcccEEe
Q 015771 30 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDISKSEREHDLVI 109 (400)
Q Consensus 30 ~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~~~~~~~~~~~~~l~~~l~~~~~~~DLVi 109 (400)
.+.+|||+|||+|..+..++...+ +++++|.|+.|++.++..+.+ +.++.. ++. .++. .++||+|+
T Consensus 40 ~~~~vLdiG~G~G~~~~~l~~~~~----~v~~~D~s~~~~~~a~~~~~~---~~~~~~-----d~~-~~~~-~~~~D~v~ 105 (239)
T 3bxo_A 40 EASSLLDVACGTGTHLEHFTKEFG----DTAGLELSEDMLTHARKRLPD---ATLHQG-----DMR-DFRL-GRKFSAVV 105 (239)
T ss_dssp TCCEEEEETCTTSHHHHHHHHHHS----EEEEEESCHHHHHHHHHHCTT---CEEEEC-----CTT-TCCC-SSCEEEEE
T ss_pred CCCeEEEecccCCHHHHHHHHhCC----cEEEEeCCHHHHHHHHHhCCC---CEEEEC-----CHH-Hccc-CCCCcEEE
Confidence 457999999999999888876543 799999999999999987632 322222 122 1222 56899999
Q ss_pred ecc-cccCCCCHHHHHHHHHHHHhc--cCCeEEEEcCCCCCc
Q 015771 110 ASY-VLGEVPSLQDRITIVRQLWDL--TRDVLVLVEPGTPQG 148 (400)
Q Consensus 110 as~-~L~eL~~~~~r~~~i~~Lw~~--~gG~LVlVE~Gtp~G 148 (400)
+++ +++++++..+...+++++.+. +||.|++.++..+..
T Consensus 106 ~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~ 147 (239)
T 3bxo_A 106 SMFSSVGYLKTTEELGAAVASFAEHLEPGGVVVVEPWWFPET 147 (239)
T ss_dssp ECTTGGGGCCSHHHHHHHHHHHHHTEEEEEEEEECCCCCTTT
T ss_pred EcCchHhhcCCHHHHHHHHHHHHHhcCCCeEEEEEeccCccc
Confidence 655 999998777778888888775 899999887655443
|
| >3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A* | Back alignment and structure |
|---|
Probab=99.10 E-value=5.1e-10 Score=108.09 Aligned_cols=118 Identities=13% Similarity=0.054 Sum_probs=80.6
Q ss_pred HHHHHHHCCCCC-CCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCC---CCCceeechhhhHh
Q 015771 19 TESFARRLPGFS-PAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK---DLPLIHSYNSIQAL 94 (400)
Q Consensus 19 L~el~~rlp~~~-p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~---~~~~~~~~~~~~~l 94 (400)
...+...++... +.+|||+|||+|..+..+++.++ .+|+++|.|+.|++.|+..+.... ++.++.. ++
T Consensus 105 ~~~l~~~l~~~~~~~~vLDiGcG~G~~~~~la~~~~---~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~-----d~ 176 (312)
T 3vc1_A 105 AEFLMDHLGQAGPDDTLVDAGCGRGGSMVMAHRRFG---SRVEGVTLSAAQADFGNRRARELRIDDHVRSRVC-----NM 176 (312)
T ss_dssp HHHHHTTSCCCCTTCEEEEESCTTSHHHHHHHHHHC---CEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEEC-----CT
T ss_pred HHHHHHHhccCCCCCEEEEecCCCCHHHHHHHHHcC---CEEEEEeCCHHHHHHHHHHHHHcCCCCceEEEEC-----Ch
Confidence 344555555333 46999999999999988887653 589999999999999998876432 1222221 22
Q ss_pred hhhcccCCCcccEEeecccccCCCCHHHHHHHHHHHHhccCCeEEEEcCCCCC
Q 015771 95 NKDISKSEREHDLVIASYVLGEVPSLQDRITIVRQLWDLTRDVLVLVEPGTPQ 147 (400)
Q Consensus 95 ~~~l~~~~~~~DLVias~~L~eL~~~~~r~~~i~~Lw~~~gG~LVlVE~Gtp~ 147 (400)
. .++...++||+|++..+|++++ .......+.+++ +|||.|+++++....
T Consensus 177 ~-~~~~~~~~fD~V~~~~~l~~~~-~~~~l~~~~~~L-kpgG~l~~~~~~~~~ 226 (312)
T 3vc1_A 177 L-DTPFDKGAVTASWNNESTMYVD-LHDLFSEHSRFL-KVGGRYVTITGCWNP 226 (312)
T ss_dssp T-SCCCCTTCEEEEEEESCGGGSC-HHHHHHHHHHHE-EEEEEEEEEEEEECT
T ss_pred h-cCCCCCCCEeEEEECCchhhCC-HHHHHHHHHHHc-CCCcEEEEEEccccc
Confidence 2 2333457899999999999994 433333333343 289999999865433
|
| >3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.10 E-value=5.1e-10 Score=103.69 Aligned_cols=111 Identities=16% Similarity=0.144 Sum_probs=76.0
Q ss_pred CCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCCCCceeechhhhHhhhhccc-CCCcccEEe
Q 015771 31 PAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDISK-SEREHDLVI 109 (400)
Q Consensus 31 p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~~~~~~~~~~~~~l~~~l~~-~~~~~DLVi 109 (400)
..+|||+|||+|..+..++...+ +|+++|.|+.|++.++..+.. .++.++... ..++....+. ....||+|+
T Consensus 57 ~~~vLD~GcG~G~~~~~la~~~~----~v~gvD~s~~~~~~a~~~~~~-~~~~~~~~d--~~~~~~~~~~~~~~~~d~v~ 129 (245)
T 3ggd_A 57 ELPLIDFACGNGTQTKFLSQFFP----RVIGLDVSKSALEIAAKENTA-ANISYRLLD--GLVPEQAAQIHSEIGDANIY 129 (245)
T ss_dssp TSCEEEETCTTSHHHHHHHHHSS----CEEEEESCHHHHHHHHHHSCC-TTEEEEECC--TTCHHHHHHHHHHHCSCEEE
T ss_pred CCeEEEEcCCCCHHHHHHHHhCC----CEEEEECCHHHHHHHHHhCcc-cCceEEECc--ccccccccccccccCccEEE
Confidence 36899999999999988887653 799999999999999998743 233332221 1111100000 112499999
Q ss_pred ecccccCCCCHHHHHHHHHHHHh--ccCCeEEEEcCCCCCch
Q 015771 110 ASYVLGEVPSLQDRITIVRQLWD--LTRDVLVLVEPGTPQGS 149 (400)
Q Consensus 110 as~~L~eL~~~~~r~~~i~~Lw~--~~gG~LVlVE~Gtp~Gf 149 (400)
+..++++++ ..++..+++++.+ ++||.|+|++.+.+.+.
T Consensus 130 ~~~~~~~~~-~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~ 170 (245)
T 3ggd_A 130 MRTGFHHIP-VEKRELLGQSLRILLGKQGAMYLIELGTGCID 170 (245)
T ss_dssp EESSSTTSC-GGGHHHHHHHHHHHHTTTCEEEEEEECTTHHH
T ss_pred EcchhhcCC-HHHHHHHHHHHHHHcCCCCEEEEEeCCccccH
Confidence 999999997 3344455555544 38999999999887654
|
| >3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.10 E-value=4.1e-10 Score=101.20 Aligned_cols=103 Identities=18% Similarity=0.214 Sum_probs=75.5
Q ss_pred CCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCCCCceeechhhhHhhhhcccCCCcccEEee
Q 015771 31 PAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDISKSEREHDLVIA 110 (400)
Q Consensus 31 p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~~~~~~~~~~~~~l~~~l~~~~~~~DLVia 110 (400)
+.+|||+|||+|..+..++.. ..+++++|.|+.|++.++.... ++.++.. ++. .++...++||+|++
T Consensus 42 ~~~vLDiGcG~G~~~~~l~~~----~~~v~gvD~s~~~~~~a~~~~~---~~~~~~~-----d~~-~~~~~~~~fD~v~~ 108 (203)
T 3h2b_A 42 DGVILDVGSGTGRWTGHLASL----GHQIEGLEPATRLVELARQTHP---SVTFHHG-----TIT-DLSDSPKRWAGLLA 108 (203)
T ss_dssp CSCEEEETCTTCHHHHHHHHT----TCCEEEECCCHHHHHHHHHHCT---TSEEECC-----CGG-GGGGSCCCEEEEEE
T ss_pred CCeEEEecCCCCHHHHHHHhc----CCeEEEEeCCHHHHHHHHHhCC---CCeEEeC-----ccc-ccccCCCCeEEEEe
Confidence 579999999999998887754 3489999999999999998743 2322222 122 22334578999999
Q ss_pred cccccCCCCHHHHHHHHHHHHhc--cCCeEEEEcCCCCC
Q 015771 111 SYVLGEVPSLQDRITIVRQLWDL--TRDVLVLVEPGTPQ 147 (400)
Q Consensus 111 s~~L~eL~~~~~r~~~i~~Lw~~--~gG~LVlVE~Gtp~ 147 (400)
.++|++++ ..+...+++++.+. +||.|++..+..+.
T Consensus 109 ~~~l~~~~-~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~ 146 (203)
T 3h2b_A 109 WYSLIHMG-PGELPDALVALRMAVEDGGGLLMSFFSGPS 146 (203)
T ss_dssp ESSSTTCC-TTTHHHHHHHHHHTEEEEEEEEEEEECCSS
T ss_pred hhhHhcCC-HHHHHHHHHHHHHHcCCCcEEEEEEccCCc
Confidence 99999996 33455666666654 79999998875543
|
| >3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440} | Back alignment and structure |
|---|
Probab=99.10 E-value=3.2e-10 Score=102.96 Aligned_cols=105 Identities=19% Similarity=0.238 Sum_probs=71.1
Q ss_pred CCCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCCCCceeechhhhHhhhhcccCCCcccEE
Q 015771 29 FSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDISKSEREHDLV 108 (400)
Q Consensus 29 ~~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~~~~~~~~~~~~~l~~~l~~~~~~~DLV 108 (400)
..+.+|||+|||+|..+..++.. ..+|+++|.|+.|++.++.. .+..+.... ..++.........+||+|
T Consensus 51 ~~~~~vLdiG~G~G~~~~~l~~~----~~~v~~vD~s~~~~~~a~~~----~~~~~~~~~--~~~~~~~~~~~~~~fD~v 120 (227)
T 3e8s_A 51 RQPERVLDLGCGEGWLLRALADR----GIEAVGVDGDRTLVDAARAA----GAGEVHLAS--YAQLAEAKVPVGKDYDLI 120 (227)
T ss_dssp TCCSEEEEETCTTCHHHHHHHTT----TCEEEEEESCHHHHHHHHHT----CSSCEEECC--HHHHHTTCSCCCCCEEEE
T ss_pred CCCCEEEEeCCCCCHHHHHHHHC----CCEEEEEcCCHHHHHHHHHh----cccccchhh--HHhhcccccccCCCccEE
Confidence 45689999999999998888743 45899999999999999886 122222221 222221111234569999
Q ss_pred eecccccCCCCHHHHHHHHHHHHhccCCeEEEEcCCC
Q 015771 109 IASYVLGEVPSLQDRITIVRQLWDLTRDVLVLVEPGT 145 (400)
Q Consensus 109 ias~~L~eL~~~~~r~~~i~~Lw~~~gG~LVlVE~Gt 145 (400)
+++++|+ ..+.......+.+++ ++||.|++.++..
T Consensus 121 ~~~~~l~-~~~~~~~l~~~~~~L-~pgG~l~~~~~~~ 155 (227)
T 3e8s_A 121 CANFALL-HQDIIELLSAMRTLL-VPGGALVIQTLHP 155 (227)
T ss_dssp EEESCCC-SSCCHHHHHHHHHTE-EEEEEEEEEECCT
T ss_pred EECchhh-hhhHHHHHHHHHHHh-CCCeEEEEEecCc
Confidence 9999999 555443333333333 2799999998754
|
| >3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides} | Back alignment and structure |
|---|
Probab=99.10 E-value=6e-10 Score=105.76 Aligned_cols=113 Identities=12% Similarity=0.024 Sum_probs=75.7
Q ss_pred HHHHHHCCCCCCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCCCCceeechhhhHhhhhc-
Q 015771 20 ESFARRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDI- 98 (400)
Q Consensus 20 ~el~~rlp~~~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~~~~~~~~~~~~~l~~~l- 98 (400)
..+...++.-.+.+|||+|||+|..+..+++. ..+|++||.|+.|++.|++.+... . +... +.++....
T Consensus 35 ~~il~~l~l~~g~~VLDlGcGtG~~a~~La~~----g~~V~gvD~S~~ml~~Ar~~~~~~-~---v~~~--~~~~~~~~~ 104 (261)
T 3iv6_A 35 ENDIFLENIVPGSTVAVIGASTRFLIEKALER----GASVTVFDFSQRMCDDLAEALADR-C---VTID--LLDITAEIP 104 (261)
T ss_dssp HHHHHTTTCCTTCEEEEECTTCHHHHHHHHHT----TCEEEEEESCHHHHHHHHHHTSSS-C---CEEE--ECCTTSCCC
T ss_pred HHHHHhcCCCCcCEEEEEeCcchHHHHHHHhc----CCEEEEEECCHHHHHHHHHHHHhc-c---ceee--eeecccccc
Confidence 33444444334579999999999998887753 458999999999999999987653 1 1111 11111100
Q ss_pred ccCCCcccEEeecccccCCCCHHHHHHHHHHHHhc-cCCeEEEEcC
Q 015771 99 SKSEREHDLVIASYVLGEVPSLQDRITIVRQLWDL-TRDVLVLVEP 143 (400)
Q Consensus 99 ~~~~~~~DLVias~~L~eL~~~~~r~~~i~~Lw~~-~gG~LVlVE~ 143 (400)
....++||+|+++++|+++. ..+...+++++.+. |||.|++..+
T Consensus 105 ~~~~~~fD~Vv~~~~l~~~~-~~~~~~~l~~l~~lLPGG~l~lS~~ 149 (261)
T 3iv6_A 105 KELAGHFDFVLNDRLINRFT-TEEARRACLGMLSLVGSGTVRASVK 149 (261)
T ss_dssp GGGTTCCSEEEEESCGGGSC-HHHHHHHHHHHHHHHTTSEEEEEEE
T ss_pred cccCCCccEEEEhhhhHhCC-HHHHHHHHHHHHHhCcCcEEEEEec
Confidence 11246899999999999886 44444555555433 8999998754
|
| >2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca} | Back alignment and structure |
|---|
Probab=99.09 E-value=1.5e-09 Score=103.49 Aligned_cols=110 Identities=14% Similarity=0.125 Sum_probs=78.0
Q ss_pred CCeEEEEccch---hHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCCCCceeechhh-hHh------hhhccc
Q 015771 31 PAKVLDFGAGT---GSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSI-QAL------NKDISK 100 (400)
Q Consensus 31 p~~VLDvG~G~---Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~~~~~~~~~~~-~~l------~~~l~~ 100 (400)
..+|||+|||+ |..+..+...++. .+|++||.|+.|++.|+.++....++.++.....- ..+ ...+
T Consensus 78 ~~~vLDlGcG~pt~G~~~~~~~~~~p~--~~v~~vD~sp~~l~~Ar~~~~~~~~v~~~~~D~~~~~~~~~~~~~~~~~-- 153 (274)
T 2qe6_A 78 ISQFLDLGSGLPTVQNTHEVAQSVNPD--ARVVYVDIDPMVLTHGRALLAKDPNTAVFTADVRDPEYILNHPDVRRMI-- 153 (274)
T ss_dssp CCEEEEETCCSCCSSCHHHHHHHHCTT--CEEEEEESSHHHHHHHHHHHTTCTTEEEEECCTTCHHHHHHSHHHHHHC--
T ss_pred CCEEEEECCCCCCCChHHHHHHHhCCC--CEEEEEECChHHHHHHHHhcCCCCCeEEEEeeCCCchhhhccchhhccC--
Confidence 47999999999 9887777777663 58999999999999999988543333333322100 000 0112
Q ss_pred CCCcccEEeecccccCCCCHHHHHHHHHHHHhc--cCCeEEEEcCCC
Q 015771 101 SEREHDLVIASYVLGEVPSLQDRITIVRQLWDL--TRDVLVLVEPGT 145 (400)
Q Consensus 101 ~~~~~DLVias~~L~eL~~~~~r~~~i~~Lw~~--~gG~LVlVE~Gt 145 (400)
...+||+|++.++|+++++. +...+++++.+. |||+|+|.+...
T Consensus 154 d~~~~d~v~~~~vlh~~~d~-~~~~~l~~~~~~L~pGG~l~i~~~~~ 199 (274)
T 2qe6_A 154 DFSRPAAIMLVGMLHYLSPD-VVDRVVGAYRDALAPGSYLFMTSLVD 199 (274)
T ss_dssp CTTSCCEEEETTTGGGSCTT-THHHHHHHHHHHSCTTCEEEEEEEBC
T ss_pred CCCCCEEEEEechhhhCCcH-HHHHHHHHHHHhCCCCcEEEEEEecC
Confidence 22479999999999999864 455677777663 899999998754
|
| >2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A* | Back alignment and structure |
|---|
Probab=99.09 E-value=8.6e-10 Score=106.49 Aligned_cols=122 Identities=10% Similarity=0.100 Sum_probs=84.4
Q ss_pred HHHHHHHHHCCCCCCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCCCCceeechhhhHhhh
Q 015771 17 LVTESFARRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNK 96 (400)
Q Consensus 17 ~vL~el~~rlp~~~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~~~~~~~~~~~~~l~~ 96 (400)
+.+..+...++...+.+|||+|||+|..+..+++.++ .+|+++|.|+.|++.++..+........+... ..++.
T Consensus 77 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~---~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~--~~d~~- 150 (318)
T 2fk8_A 77 AKVDLNLDKLDLKPGMTLLDIGCGWGTTMRRAVERFD---VNVIGLTLSKNQHARCEQVLASIDTNRSRQVL--LQGWE- 150 (318)
T ss_dssp HHHHHHHTTSCCCTTCEEEEESCTTSHHHHHHHHHHC---CEEEEEESCHHHHHHHHHHHHTSCCSSCEEEE--ESCGG-
T ss_pred HHHHHHHHhcCCCCcCEEEEEcccchHHHHHHHHHCC---CEEEEEECCHHHHHHHHHHHHhcCCCCceEEE--ECChH-
Confidence 4555666666544557999999999999888876653 48999999999999999988654211111110 11221
Q ss_pred hcccCCCcccEEeecccccCCCCHHHHHHHHHHHHhc--cCCeEEEEcCCCCCc
Q 015771 97 DISKSEREHDLVIASYVLGEVPSLQDRITIVRQLWDL--TRDVLVLVEPGTPQG 148 (400)
Q Consensus 97 ~l~~~~~~~DLVias~~L~eL~~~~~r~~~i~~Lw~~--~gG~LVlVE~Gtp~G 148 (400)
.+ .++||+|++..+|++++. .....+++++.+. |||.|++.++..+..
T Consensus 151 ~~---~~~fD~v~~~~~l~~~~~-~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~ 200 (318)
T 2fk8_A 151 DF---AEPVDRIVSIEAFEHFGH-ENYDDFFKRCFNIMPADGRMTVQSSVSYHP 200 (318)
T ss_dssp GC---CCCCSEEEEESCGGGTCG-GGHHHHHHHHHHHSCTTCEEEEEEEECCCH
T ss_pred HC---CCCcCEEEEeChHHhcCH-HHHHHHHHHHHHhcCCCcEEEEEEeccCCc
Confidence 12 268999999999999952 3344555555543 899999999876653
|
| >3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.09 E-value=3.3e-10 Score=106.90 Aligned_cols=106 Identities=14% Similarity=0.276 Sum_probs=78.7
Q ss_pred CCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCC--CCCceeechhhhHhhhhcccCCCcccE
Q 015771 30 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK--DLPLIHSYNSIQALNKDISKSEREHDL 107 (400)
Q Consensus 30 ~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~--~~~~~~~~~~~~~l~~~l~~~~~~~DL 107 (400)
.+.+|||+|||+|..+..++..++ ..+++++|+|+.|++.++..+.... ++.++.. ++. .++...++||+
T Consensus 37 ~~~~vLDiG~G~G~~~~~l~~~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~-----d~~-~~~~~~~~fD~ 108 (276)
T 3mgg_A 37 PGAKVLEAGCGIGAQTVILAKNNP--DAEITSIDISPESLEKARENTEKNGIKNVKFLQA-----NIF-SLPFEDSSFDH 108 (276)
T ss_dssp TTCEEEETTCTTSHHHHHHHHHCT--TSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEEC-----CGG-GCCSCTTCEEE
T ss_pred CCCeEEEecCCCCHHHHHHHHhCC--CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEc-----ccc-cCCCCCCCeeE
Confidence 347999999999999998888765 3589999999999999998875432 2222211 222 23345678999
Q ss_pred EeecccccCCCCHHHHHHHHHHHHhccCCeEEEEcCC
Q 015771 108 VIASYVLGEVPSLQDRITIVRQLWDLTRDVLVLVEPG 144 (400)
Q Consensus 108 Vias~~L~eL~~~~~r~~~i~~Lw~~~gG~LVlVE~G 144 (400)
|++.++|+++++.......+.++++ |||.|+++++.
T Consensus 109 v~~~~~l~~~~~~~~~l~~~~~~L~-pgG~l~~~~~~ 144 (276)
T 3mgg_A 109 IFVCFVLEHLQSPEEALKSLKKVLK-PGGTITVIEGD 144 (276)
T ss_dssp EEEESCGGGCSCHHHHHHHHHHHEE-EEEEEEEEEEC
T ss_pred EEEechhhhcCCHHHHHHHHHHHcC-CCcEEEEEEcC
Confidence 9999999999877655555555553 89999999864
|
| >3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A* | Back alignment and structure |
|---|
Probab=99.08 E-value=3.3e-10 Score=105.49 Aligned_cols=111 Identities=12% Similarity=0.142 Sum_probs=78.6
Q ss_pred HHHHHCCCCC-CCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCC---CCceeechhhhHhhh
Q 015771 21 SFARRLPGFS-PAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKD---LPLIHSYNSIQALNK 96 (400)
Q Consensus 21 el~~rlp~~~-p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~---~~~~~~~~~~~~l~~ 96 (400)
.+...++... +.+|||+|||+|..+..++...+ .+|+++|+|+.|++.++..+..... +.++. .++.
T Consensus 36 ~~l~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~~---~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~-----~d~~- 106 (257)
T 3f4k_A 36 KAVSFINELTDDAKIADIGCGTGGQTLFLADYVK---GQITGIDLFPDFIEIFNENAVKANCADRVKGIT-----GSMD- 106 (257)
T ss_dssp HHHTTSCCCCTTCEEEEETCTTSHHHHHHHHHCC---SEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEE-----CCTT-
T ss_pred HHHHHHhcCCCCCeEEEeCCCCCHHHHHHHHhCC---CeEEEEECCHHHHHHHHHHHHHcCCCCceEEEE-----CChh-
Confidence 3334444433 36999999999999999888765 3899999999999999988764321 22221 1221
Q ss_pred hcccCCCcccEEeecccccCCCCHHHHHHHHHHHHhc--cCCeEEEEcCC
Q 015771 97 DISKSEREHDLVIASYVLGEVPSLQDRITIVRQLWDL--TRDVLVLVEPG 144 (400)
Q Consensus 97 ~l~~~~~~~DLVias~~L~eL~~~~~r~~~i~~Lw~~--~gG~LVlVE~G 144 (400)
.++...++||+|++.++|+++ +.. .+++++.+. |||.|++.++.
T Consensus 107 ~~~~~~~~fD~v~~~~~l~~~-~~~---~~l~~~~~~L~pgG~l~~~~~~ 152 (257)
T 3f4k_A 107 NLPFQNEELDLIWSEGAIYNI-GFE---RGMNEWSKYLKKGGFIAVSEAS 152 (257)
T ss_dssp SCSSCTTCEEEEEEESCSCCC-CHH---HHHHHHHTTEEEEEEEEEEEEE
T ss_pred hCCCCCCCEEEEEecChHhhc-CHH---HHHHHHHHHcCCCcEEEEEEee
Confidence 234446789999999999998 443 455555543 89999999864
|
| >3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.08 E-value=6.6e-10 Score=102.87 Aligned_cols=109 Identities=18% Similarity=0.222 Sum_probs=74.4
Q ss_pred HHHHCCCCCC-CeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCCCCceeechhhhHhhhhccc
Q 015771 22 FARRLPGFSP-AKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDISK 100 (400)
Q Consensus 22 l~~rlp~~~p-~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~~~~~~~~~~~~~l~~~l~~ 100 (400)
+...++.+++ .+|||+|||+|..+..+++. ..+|+++|+|+.|++.++.. +.++... ..+... +.
T Consensus 32 ~~~~l~~~~~~~~vLDiGcG~G~~~~~l~~~----~~~v~gvD~s~~~~~~a~~~------~~~~~~d--~~~~~~--~~ 97 (240)
T 3dli_A 32 LRRYIPYFKGCRRVLDIGCGRGEFLELCKEE----GIESIGVDINEDMIKFCEGK------FNVVKSD--AIEYLK--SL 97 (240)
T ss_dssp HGGGGGGTTTCSCEEEETCTTTHHHHHHHHH----TCCEEEECSCHHHHHHHHTT------SEEECSC--HHHHHH--TS
T ss_pred HHHHHhhhcCCCeEEEEeCCCCHHHHHHHhC----CCcEEEEECCHHHHHHHHhh------cceeecc--HHHHhh--hc
Confidence 3333343443 79999999999998887764 23699999999999999875 1222111 111111 33
Q ss_pred CCCcccEEeecccccCCCCHHHHHHHHHHHHh--ccCCeEEEEcCCC
Q 015771 101 SEREHDLVIASYVLGEVPSLQDRITIVRQLWD--LTRDVLVLVEPGT 145 (400)
Q Consensus 101 ~~~~~DLVias~~L~eL~~~~~r~~~i~~Lw~--~~gG~LVlVE~Gt 145 (400)
..++||+|++.++|++++. .+...+++++.+ +|||.|++..++.
T Consensus 98 ~~~~fD~i~~~~~l~~~~~-~~~~~~l~~~~~~LkpgG~l~~~~~~~ 143 (240)
T 3dli_A 98 PDKYLDGVMISHFVEHLDP-ERLFELLSLCYSKMKYSSYIVIESPNP 143 (240)
T ss_dssp CTTCBSEEEEESCGGGSCG-GGHHHHHHHHHHHBCTTCCEEEEEECT
T ss_pred CCCCeeEEEECCchhhCCc-HHHHHHHHHHHHHcCCCcEEEEEeCCc
Confidence 4578999999999999973 333445555544 3899999988864
|
| >3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=99.08 E-value=6.6e-10 Score=100.61 Aligned_cols=109 Identities=18% Similarity=0.273 Sum_probs=78.2
Q ss_pred HHHHHHHHCCCCCCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCCCCceeechhhhHhhhh
Q 015771 18 VTESFARRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKD 97 (400)
Q Consensus 18 vL~el~~rlp~~~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~~~~~~~~~~~~~l~~~ 97 (400)
.+.++...++ .+.+|||+|||+|..+..++.. ..+|+++|.|+.|++.++..+. +.++... +. .
T Consensus 33 ~~~~~~~~~~--~~~~vLDiGcG~G~~~~~l~~~----~~~v~~vD~s~~~~~~a~~~~~----~~~~~~d-----~~-~ 96 (211)
T 3e23_A 33 TLTKFLGELP--AGAKILELGCGAGYQAEAMLAA----GFDVDATDGSPELAAEASRRLG----RPVRTML-----FH-Q 96 (211)
T ss_dssp HHHHHHTTSC--TTCEEEESSCTTSHHHHHHHHT----TCEEEEEESCHHHHHHHHHHHT----SCCEECC-----GG-G
T ss_pred HHHHHHHhcC--CCCcEEEECCCCCHHHHHHHHc----CCeEEEECCCHHHHHHHHHhcC----CceEEee-----ec-c
Confidence 3444444433 2479999999999998887753 3589999999999999998772 2222221 22 2
Q ss_pred cccCCCcccEEeecccccCCCCHHHHHHHHHHHHhc--cCCeEEEEcCC
Q 015771 98 ISKSEREHDLVIASYVLGEVPSLQDRITIVRQLWDL--TRDVLVLVEPG 144 (400)
Q Consensus 98 l~~~~~~~DLVias~~L~eL~~~~~r~~~i~~Lw~~--~gG~LVlVE~G 144 (400)
++ ..++||+|++.++|++++ ..+...+++++.+. +||.|++..+.
T Consensus 97 ~~-~~~~fD~v~~~~~l~~~~-~~~~~~~l~~~~~~LkpgG~l~~~~~~ 143 (211)
T 3e23_A 97 LD-AIDAYDAVWAHACLLHVP-RDELADVLKLIWRALKPGGLFYASYKS 143 (211)
T ss_dssp CC-CCSCEEEEEECSCGGGSC-HHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred CC-CCCcEEEEEecCchhhcC-HHHHHHHHHHHHHhcCCCcEEEEEEcC
Confidence 23 467899999999999997 55566677776654 89999988653
|
| >1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.07 E-value=6e-10 Score=102.50 Aligned_cols=120 Identities=13% Similarity=0.084 Sum_probs=82.8
Q ss_pred HHHHHHHHHHHHHHCCCCCCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCC-CCCceeechh
Q 015771 12 LLFTLLVTESFARRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK-DLPLIHSYNS 90 (400)
Q Consensus 12 Ya~~~~vL~el~~rlp~~~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~-~~~~~~~~~~ 90 (400)
|......+.++.... ...+.+|||+|||+|..+..++.. ..+++++|.|+.|++.++..+.... ++.++..
T Consensus 20 ~~~~~~~~~~~l~~~-~~~~~~vLdiG~G~G~~~~~l~~~----~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~--- 91 (246)
T 1y8c_A 20 YKKWSDFIIEKCVEN-NLVFDDYLDLACGTGNLTENLCPK----FKNTWAVDLSQEMLSEAENKFRSQGLKPRLACQ--- 91 (246)
T ss_dssp HHHHHHHHHHHHHTT-TCCTTEEEEETCTTSTTHHHHGGG----SSEEEEECSCHHHHHHHHHHHHHTTCCCEEECC---
T ss_pred HHHHHHHHHHHHHHh-CCCCCeEEEeCCCCCHHHHHHHHC----CCcEEEEECCHHHHHHHHHHHhhcCCCeEEEec---
Confidence 334444444433322 125679999999999988877753 3589999999999999998875432 2222221
Q ss_pred hhHhhhhcccCCCcccEEeecc-cccCCCCHHHHHHHHHHHHhc--cCCeEEEEcC
Q 015771 91 IQALNKDISKSEREHDLVIASY-VLGEVPSLQDRITIVRQLWDL--TRDVLVLVEP 143 (400)
Q Consensus 91 ~~~l~~~l~~~~~~~DLVias~-~L~eL~~~~~r~~~i~~Lw~~--~gG~LVlVE~ 143 (400)
++. .++.. ++||+|++.+ +|+++++..+...+++++.+. +||.|++..+
T Consensus 92 --d~~-~~~~~-~~fD~v~~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 143 (246)
T 1y8c_A 92 --DIS-NLNIN-RKFDLITCCLDSTNYIIDSDDLKKYFKAVSNHLKEGGVFIFDIN 143 (246)
T ss_dssp --CGG-GCCCS-CCEEEEEECTTGGGGCCSHHHHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred --ccc-cCCcc-CCceEEEEcCccccccCCHHHHHHHHHHHHHhcCCCcEEEEEec
Confidence 222 12223 6899999998 999997767777888888775 7999987443
|
| >3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae} | Back alignment and structure |
|---|
Probab=99.07 E-value=1e-09 Score=96.12 Aligned_cols=102 Identities=14% Similarity=0.085 Sum_probs=70.8
Q ss_pred CCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCCC-C-ceeechhhhHhhhhcccCCCcccE
Q 015771 30 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDL-P-LIHSYNSIQALNKDISKSEREHDL 107 (400)
Q Consensus 30 ~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~~-~-~~~~~~~~~~l~~~l~~~~~~~DL 107 (400)
.+.+|||+|||+|..+..++..++ ..+++++|.|+.|++.++..+...... . .+.. +....++...++||+
T Consensus 25 ~~~~vldiG~G~G~~~~~l~~~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~-----d~~~~~~~~~~~~D~ 97 (178)
T 3hm2_A 25 PHETLWDIGGGSGSIAIEWLRSTP--QTTAVCFEISEERRERILSNAINLGVSDRIAVQQ-----GAPRAFDDVPDNPDV 97 (178)
T ss_dssp TTEEEEEESTTTTHHHHHHHTTSS--SEEEEEECSCHHHHHHHHHHHHTTTCTTSEEEEC-----CTTGGGGGCCSCCSE
T ss_pred CCCeEEEeCCCCCHHHHHHHHHCC--CCeEEEEeCCHHHHHHHHHHHHHhCCCCCEEEec-----chHhhhhccCCCCCE
Confidence 446999999999999998887664 478999999999999999987654211 0 2221 122223322368999
Q ss_pred EeecccccCCCCHHHHHHHHHHHHhc--cCCeEEEEcCCC
Q 015771 108 VIASYVLGEVPSLQDRITIVRQLWDL--TRDVLVLVEPGT 145 (400)
Q Consensus 108 Vias~~L~eL~~~~~r~~~i~~Lw~~--~gG~LVlVE~Gt 145 (400)
|++++++++ ..+++++.+. +||.|++.....
T Consensus 98 i~~~~~~~~-------~~~l~~~~~~L~~gG~l~~~~~~~ 130 (178)
T 3hm2_A 98 IFIGGGLTA-------PGVFAAAWKRLPVGGRLVANAVTV 130 (178)
T ss_dssp EEECC-TTC-------TTHHHHHHHTCCTTCEEEEEECSH
T ss_pred EEECCcccH-------HHHHHHHHHhcCCCCEEEEEeecc
Confidence 999999876 2344455443 899999887643
|
| >3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.07 E-value=4e-10 Score=103.89 Aligned_cols=107 Identities=12% Similarity=0.101 Sum_probs=75.9
Q ss_pred CCCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCCCCceeechhhhHhhhhcccCCCcccEE
Q 015771 29 FSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDISKSEREHDLV 108 (400)
Q Consensus 29 ~~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~~~~~~~~~~~~~l~~~l~~~~~~~DLV 108 (400)
+.+.+|||+|||+|..+..++. ...+|+++|+|+.|++.++..+........+... ..++.. ++ ...+||+|
T Consensus 65 ~~~~~vLDiGcG~G~~~~~l~~----~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~--~~d~~~-~~-~~~~fD~v 136 (235)
T 3lcc_A 65 LPLGRALVPGCGGGHDVVAMAS----PERFVVGLDISESALAKANETYGSSPKAEYFSFV--KEDVFT-WR-PTELFDLI 136 (235)
T ss_dssp SCCEEEEEETCTTCHHHHHHCB----TTEEEEEECSCHHHHHHHHHHHTTSGGGGGEEEE--CCCTTT-CC-CSSCEEEE
T ss_pred CCCCCEEEeCCCCCHHHHHHHh----CCCeEEEEECCHHHHHHHHHHhhccCCCcceEEE--ECchhc-CC-CCCCeeEE
Confidence 4557999999999999887763 3568999999999999999988653211111110 112221 22 34589999
Q ss_pred eecccccCCCCHHHHHHHHHHHHhc--cCCeEEEEcCC
Q 015771 109 IASYVLGEVPSLQDRITIVRQLWDL--TRDVLVLVEPG 144 (400)
Q Consensus 109 ias~~L~eL~~~~~r~~~i~~Lw~~--~gG~LVlVE~G 144 (400)
++.++|++++ ...+..+++++.+. +||.|++++..
T Consensus 137 ~~~~~l~~~~-~~~~~~~l~~~~~~LkpgG~l~~~~~~ 173 (235)
T 3lcc_A 137 FDYVFFCAIE-PEMRPAWAKSMYELLKPDGELITLMYP 173 (235)
T ss_dssp EEESSTTTSC-GGGHHHHHHHHHHHEEEEEEEEEEECC
T ss_pred EEChhhhcCC-HHHHHHHHHHHHHHCCCCcEEEEEEec
Confidence 9999999997 44556666666653 89999998764
|
| >3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei} | Back alignment and structure |
|---|
Probab=99.07 E-value=6.6e-10 Score=104.61 Aligned_cols=124 Identities=13% Similarity=0.043 Sum_probs=83.6
Q ss_pred HHHHHHHCCCCCCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHH------HHHHHHHhhcCCCCCCceeechhhh
Q 015771 19 TESFARRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQS------MQRAGQSLMQGPKDLPLIHSYNSIQ 92 (400)
Q Consensus 19 L~el~~rlp~~~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~------ml~~a~~ll~~~~~~~~~~~~~~~~ 92 (400)
+..+...++...+.+|||+|||+|..+..++...+ ...+|+++|+|+. |++.+++.+......+.+... ..
T Consensus 32 ~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~g-~~~~v~gvD~s~~~~~~~~~~~~a~~~~~~~~~~~~v~~~--~~ 108 (275)
T 3bkx_A 32 RLAIAEAWQVKPGEKILEIGCGQGDLSAVLADQVG-SSGHVTGIDIASPDYGAPLTLGQAWNHLLAGPLGDRLTVH--FN 108 (275)
T ss_dssp HHHHHHHHTCCTTCEEEEESCTTSHHHHHHHHHHC-TTCEEEEECSSCTTCCSSSCHHHHHHHHHTSTTGGGEEEE--CS
T ss_pred HHHHHHHcCCCCCCEEEEeCCCCCHHHHHHHHHhC-CCCEEEEEECCccccccHHHHHHHHHHHHhcCCCCceEEE--EC
Confidence 33444444433457999999999999998887763 2258999999997 999999887653211111110 01
Q ss_pred H-h-hhhcccCCCcccEEeecccccCCCCHHHHHHHHHHHHhccCCeEEEEcCCCC
Q 015771 93 A-L-NKDISKSEREHDLVIASYVLGEVPSLQDRITIVRQLWDLTRDVLVLVEPGTP 146 (400)
Q Consensus 93 ~-l-~~~l~~~~~~~DLVias~~L~eL~~~~~r~~~i~~Lw~~~gG~LVlVE~Gtp 146 (400)
+ + ...++...++||+|++.++|+++++.....+.++.|.+ +||.|++.+...+
T Consensus 109 d~~~~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~~~l~~-~gG~l~~~~~~~~ 163 (275)
T 3bkx_A 109 TNLSDDLGPIADQHFDRVVLAHSLWYFASANALALLFKNMAA-VCDHVDVAEWSMQ 163 (275)
T ss_dssp CCTTTCCGGGTTCCCSEEEEESCGGGSSCHHHHHHHHHHHTT-TCSEEEEEEECSS
T ss_pred ChhhhccCCCCCCCEEEEEEccchhhCCCHHHHHHHHHHHhC-CCCEEEEEEecCC
Confidence 1 1 11223345789999999999999877654555555543 6999999987654
|
| >3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=99.06 E-value=2.6e-10 Score=99.58 Aligned_cols=98 Identities=11% Similarity=0.186 Sum_probs=71.6
Q ss_pred CCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCCCCceeechhhhHhhhhcccCCCcccEEee
Q 015771 31 PAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDISKSEREHDLVIA 110 (400)
Q Consensus 31 p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~~~~~~~~~~~~~l~~~l~~~~~~~DLVia 110 (400)
+.+|||+|||+|..+..+.... .+++++|.|+.|++.++.... ++.++.. + .+...++||+|++
T Consensus 18 ~~~vLDiG~G~G~~~~~l~~~~----~~v~~vD~s~~~~~~a~~~~~---~v~~~~~-----d----~~~~~~~~D~v~~ 81 (170)
T 3i9f_A 18 KGVIVDYGCGNGFYCKYLLEFA----TKLYCIDINVIALKEVKEKFD---SVITLSD-----P----KEIPDNSVDFILF 81 (170)
T ss_dssp CEEEEEETCTTCTTHHHHHTTE----EEEEEECSCHHHHHHHHHHCT---TSEEESS-----G----GGSCTTCEEEEEE
T ss_pred CCeEEEECCCCCHHHHHHHhhc----CeEEEEeCCHHHHHHHHHhCC---CcEEEeC-----C----CCCCCCceEEEEE
Confidence 4699999999999988887543 489999999999999988722 3322221 1 3335678999999
Q ss_pred cccccCCCCHHHHHHHHHHHHhccCCeEEEEcCCC
Q 015771 111 SYVLGEVPSLQDRITIVRQLWDLTRDVLVLVEPGT 145 (400)
Q Consensus 111 s~~L~eL~~~~~r~~~i~~Lw~~~gG~LVlVE~Gt 145 (400)
.++++++++...-...+.+++ ++||.+++++...
T Consensus 82 ~~~l~~~~~~~~~l~~~~~~L-~pgG~l~~~~~~~ 115 (170)
T 3i9f_A 82 ANSFHDMDDKQHVISEVKRIL-KDDGRVIIIDWRK 115 (170)
T ss_dssp ESCSTTCSCHHHHHHHHHHHE-EEEEEEEEEEECS
T ss_pred ccchhcccCHHHHHHHHHHhc-CCCCEEEEEEcCc
Confidence 999999976544333444444 2799999997654
|
| >1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.05 E-value=1.4e-09 Score=99.05 Aligned_cols=115 Identities=15% Similarity=0.196 Sum_probs=77.8
Q ss_pred HHHHHHHHCCCCCCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCC-CCCceeechhhhHhhh
Q 015771 18 VTESFARRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK-DLPLIHSYNSIQALNK 96 (400)
Q Consensus 18 vL~el~~rlp~~~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~-~~~~~~~~~~~~~l~~ 96 (400)
++..+.+.++. +.+|||+|||+|..+..++...+ +++++|.|+.|++.++..+.... ++.++.. ++.
T Consensus 28 ~~~~l~~~~~~--~~~vLDlG~G~G~~~~~l~~~~~----~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~-----d~~- 95 (227)
T 1ve3_A 28 LEPLLMKYMKK--RGKVLDLACGVGGFSFLLEDYGF----EVVGVDISEDMIRKAREYAKSRESNVEFIVG-----DAR- 95 (227)
T ss_dssp HHHHHHHSCCS--CCEEEEETCTTSHHHHHHHHTTC----EEEEEESCHHHHHHHHHHHHHTTCCCEEEEC-----CTT-
T ss_pred HHHHHHHhcCC--CCeEEEEeccCCHHHHHHHHcCC----EEEEEECCHHHHHHHHHHHHhcCCCceEEEC-----chh-
Confidence 34444444433 57999999999999888776543 89999999999999998875332 2322222 122
Q ss_pred hcccCCCcccEEeecccccCCCCHHHHHHHHHHHHhc--cCCeEEEEcCCC
Q 015771 97 DISKSEREHDLVIASYVLGEVPSLQDRITIVRQLWDL--TRDVLVLVEPGT 145 (400)
Q Consensus 97 ~l~~~~~~~DLVias~~L~eL~~~~~r~~~i~~Lw~~--~gG~LVlVE~Gt 145 (400)
.++...++||+|++..+++... ..+...+++++.+. +||.|+++++..
T Consensus 96 ~~~~~~~~~D~v~~~~~~~~~~-~~~~~~~l~~~~~~L~~gG~l~~~~~~~ 145 (227)
T 1ve3_A 96 KLSFEDKTFDYVIFIDSIVHFE-PLELNQVFKEVRRVLKPSGKFIMYFTDL 145 (227)
T ss_dssp SCCSCTTCEEEEEEESCGGGCC-HHHHHHHHHHHHHHEEEEEEEEEEEECH
T ss_pred cCCCCCCcEEEEEEcCchHhCC-HHHHHHHHHHHHHHcCCCcEEEEEecCh
Confidence 1233456899999999854443 34445566666553 899999998753
|
| >2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15 | Back alignment and structure |
|---|
Probab=99.05 E-value=1.9e-10 Score=108.54 Aligned_cols=124 Identities=12% Similarity=0.047 Sum_probs=77.1
Q ss_pred HHHHHHHHC--CCCCCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCC-CCCc------eee-
Q 015771 18 VTESFARRL--PGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK-DLPL------IHS- 87 (400)
Q Consensus 18 vL~el~~rl--p~~~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~-~~~~------~~~- 87 (400)
++.++.+.+ +...+.+|||+|||+|..+..++. ....+|+++|.|+.|++.|++.++... ...+ +..
T Consensus 41 ~~~~~~~~~~~~~~~g~~vLDiGCG~G~~~~~~~~---~~~~~v~g~D~s~~~l~~a~~~~~~~~~~~d~s~~~~~~~~~ 117 (263)
T 2a14_A 41 NLECLHKTFGPGGLQGDTLIDIGSGPTIYQVLAAC---DSFQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACEL 117 (263)
T ss_dssp HHHHHHHHHSTTSCCEEEEEESSCTTCCGGGTTGG---GTEEEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCCCceEEEeCCCccHHHHHHHH---hhhcceeeccccHHHHHHHHHHHhcCCCcccchHHHHHHHhc
Confidence 344444433 344557999999999965443332 123579999999999999998765421 1100 000
Q ss_pred --c-----------------hhhhHhhhhcc---cCCCcccEEeecccccCC-CCHHHHHHHHHHHHhc--cCCeEEEEc
Q 015771 88 --Y-----------------NSIQALNKDIS---KSEREHDLVIASYVLGEV-PSLQDRITIVRQLWDL--TRDVLVLVE 142 (400)
Q Consensus 88 --~-----------------~~~~~l~~~l~---~~~~~~DLVias~~L~eL-~~~~~r~~~i~~Lw~~--~gG~LVlVE 142 (400)
. ....++....+ ...++||+|+++++|+++ ++..+...+++++.+. |||.||+..
T Consensus 118 ~~~~~~~~~~~~~~~~~i~~~~~~D~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~i~r~LKPGG~li~~~ 197 (263)
T 2a14_A 118 EGNSGRWEEKEEKLRAAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLVTTV 197 (263)
T ss_dssp TTCGGGHHHHHHHHHHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred CCCCcchhhHHHHHHhhhheEEeccccCCCCCCccccCCCCEeeehHHHHHhcCCHHHHHHHHHHHHHHcCCCcEEEEEE
Confidence 0 00011111111 124589999999999985 4456667788887774 899999996
Q ss_pred CC
Q 015771 143 PG 144 (400)
Q Consensus 143 ~G 144 (400)
..
T Consensus 198 ~~ 199 (263)
T 2a14_A 198 TL 199 (263)
T ss_dssp ES
T ss_pred ee
Confidence 53
|
| >2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A* | Back alignment and structure |
|---|
Probab=99.03 E-value=4.4e-10 Score=105.99 Aligned_cols=102 Identities=14% Similarity=-0.015 Sum_probs=72.1
Q ss_pred CCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcC-------------------CCCCCceeechh
Q 015771 30 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQG-------------------PKDLPLIHSYNS 90 (400)
Q Consensus 30 ~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~-------------------~~~~~~~~~~~~ 90 (400)
.+.+|||+|||+|..+..+++. ..+|++||.|+.|++.|++.... ..++.++.
T Consensus 68 ~~~~vLD~GCG~G~~~~~La~~----G~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~---- 139 (252)
T 2gb4_A 68 SGLRVFFPLCGKAIEMKWFADR----GHTVVGVEISEIGIREFFAEQNLSYTEEPLAEIAGAKVFKSSSGSISLYC---- 139 (252)
T ss_dssp CSCEEEETTCTTCTHHHHHHHT----TCEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEE----
T ss_pred CCCeEEEeCCCCcHHHHHHHHC----CCeEEEEECCHHHHHHHHHhcccccccccccccccccccccCCCceEEEE----
Confidence 4579999999999988777742 35899999999999999776531 11222221
Q ss_pred hhHhhhhcccC-CCcccEEeecccccCCCCHHHHHHHHHHHHhc--cCCeEEEEc
Q 015771 91 IQALNKDISKS-EREHDLVIASYVLGEVPSLQDRITIVRQLWDL--TRDVLVLVE 142 (400)
Q Consensus 91 ~~~l~~~l~~~-~~~~DLVias~~L~eL~~~~~r~~~i~~Lw~~--~gG~LVlVE 142 (400)
.++. .++.. .++||+|++..+|+.++ ...+..+++++.+. |||.|+|+.
T Consensus 140 -~D~~-~l~~~~~~~FD~V~~~~~l~~l~-~~~~~~~l~~~~~~LkpGG~l~l~~ 191 (252)
T 2gb4_A 140 -CSIF-DLPRANIGKFDRIWDRGALVAIN-PGDHDRYADIILSLLRKEFQYLVAV 191 (252)
T ss_dssp -SCTT-TGGGGCCCCEEEEEESSSTTTSC-GGGHHHHHHHHHHTEEEEEEEEEEE
T ss_pred -Cccc-cCCcccCCCEEEEEEhhhhhhCC-HHHHHHHHHHHHHHcCCCeEEEEEE
Confidence 1222 12222 26899999999999996 55677777777764 899997653
|
| >3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A* | Back alignment and structure |
|---|
Probab=99.03 E-value=5.2e-10 Score=105.21 Aligned_cols=105 Identities=12% Similarity=0.122 Sum_probs=73.9
Q ss_pred CCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCCCCceeechhhhHhhhhcccCCCcccEEe
Q 015771 30 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDISKSEREHDLVI 109 (400)
Q Consensus 30 ~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~~~~~~~~~~~~~l~~~l~~~~~~~DLVi 109 (400)
.+.+|||+|||+|..+..+++. + ..+|+++|+|+.|++.+++.+....-.+.+... ..++. .++...++||+|+
T Consensus 46 ~~~~vLDiGcG~G~~~~~la~~-~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~--~~d~~-~~~~~~~~fD~i~ 119 (267)
T 3kkz_A 46 EKSLIADIGCGTGGQTMVLAGH-V--TGQVTGLDFLSGFIDIFNRNARQSGLQNRVTGI--VGSMD-DLPFRNEELDLIW 119 (267)
T ss_dssp TTCEEEEETCTTCHHHHHHHTT-C--SSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEE--ECCTT-SCCCCTTCEEEEE
T ss_pred CCCEEEEeCCCCCHHHHHHHhc-c--CCEEEEEeCCHHHHHHHHHHHHHcCCCcCcEEE--EcChh-hCCCCCCCEEEEE
Confidence 3579999999999999888864 2 358999999999999999987643211111110 11222 2333467899999
Q ss_pred ecccccCCCCHHHHHHHHHHHHhc--cCCeEEEEcCC
Q 015771 110 ASYVLGEVPSLQDRITIVRQLWDL--TRDVLVLVEPG 144 (400)
Q Consensus 110 as~~L~eL~~~~~r~~~i~~Lw~~--~gG~LVlVE~G 144 (400)
+..+++++ +.. .+++++.+. |||.|++.++.
T Consensus 120 ~~~~~~~~-~~~---~~l~~~~~~LkpgG~l~~~~~~ 152 (267)
T 3kkz_A 120 SEGAIYNI-GFE---RGLNEWRKYLKKGGYLAVSECS 152 (267)
T ss_dssp ESSCGGGT-CHH---HHHHHHGGGEEEEEEEEEEEEE
T ss_pred EcCCceec-CHH---HHHHHHHHHcCCCCEEEEEEee
Confidence 99999998 443 445555443 89999999864
|
| >3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A* | Back alignment and structure |
|---|
Probab=99.02 E-value=3.3e-10 Score=107.85 Aligned_cols=108 Identities=19% Similarity=0.217 Sum_probs=75.6
Q ss_pred CCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCC------CCCceeechhhhHhhhhcccCCC
Q 015771 30 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK------DLPLIHSYNSIQALNKDISKSER 103 (400)
Q Consensus 30 ~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~------~~~~~~~~~~~~~l~~~l~~~~~ 103 (400)
.+.+|||+|||+|..+..+++. ..+|+++|+|+.|++.|++.+.... ++.+.... ...+...+ ...+
T Consensus 57 ~~~~vLDiGcG~G~~~~~l~~~----~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~d--~~~~~~~~-~~~~ 129 (293)
T 3thr_A 57 GCHRVLDVACGTGVDSIMLVEE----GFSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEAN--WLTLDKDV-PAGD 129 (293)
T ss_dssp TCCEEEETTCTTSHHHHHHHHT----TCEEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECC--GGGHHHHS-CCTT
T ss_pred CCCEEEEecCCCCHHHHHHHHC----CCeEEEEECCHHHHHHHHHhhhhcccccccceeeEeecC--hhhCcccc-ccCC
Confidence 4579999999999998887753 3489999999999999987653211 11111111 11111111 3457
Q ss_pred cccEEeec-ccccCCCC----HHHHHHHHHHHHhc--cCCeEEEEcCC
Q 015771 104 EHDLVIAS-YVLGEVPS----LQDRITIVRQLWDL--TRDVLVLVEPG 144 (400)
Q Consensus 104 ~~DLVias-~~L~eL~~----~~~r~~~i~~Lw~~--~gG~LVlVE~G 144 (400)
+||+|++. ++|+++++ ..+...+++++.+. |||.|++..+.
T Consensus 130 ~fD~V~~~g~~l~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 177 (293)
T 3thr_A 130 GFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDHRN 177 (293)
T ss_dssp CEEEEEECTTCGGGSCCSSSSSHHHHHHHHHHHHTEEEEEEEEEEEEC
T ss_pred CeEEEEEcChHHhhcCccccCHHHHHHHHHHHHHHcCCCeEEEEEeCC
Confidence 89999998 99999987 35566777777764 89999998774
|
| >3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae} | Back alignment and structure |
|---|
Probab=99.02 E-value=4.9e-10 Score=106.46 Aligned_cols=103 Identities=16% Similarity=0.180 Sum_probs=75.6
Q ss_pred CCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCC-CCCceeechhhhHhhhhcccCCCcccEE
Q 015771 30 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK-DLPLIHSYNSIQALNKDISKSEREHDLV 108 (400)
Q Consensus 30 ~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~-~~~~~~~~~~~~~l~~~l~~~~~~~DLV 108 (400)
.+.+|||+|||+|..+..++.. ..+|+++|.|+.|++.++..+.... ++.++. .++.. ++. .++||+|
T Consensus 120 ~~~~vLD~GcG~G~~~~~l~~~----g~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~-----~d~~~-~~~-~~~fD~i 188 (286)
T 3m70_A 120 SPCKVLDLGCGQGRNSLYLSLL----GYDVTSWDHNENSIAFLNETKEKENLNISTAL-----YDINA-ANI-QENYDFI 188 (286)
T ss_dssp CSCEEEEESCTTCHHHHHHHHT----TCEEEEEESCHHHHHHHHHHHHHTTCCEEEEE-----CCGGG-CCC-CSCEEEE
T ss_pred CCCcEEEECCCCCHHHHHHHHC----CCeEEEEECCHHHHHHHHHHHHHcCCceEEEE-----ecccc-ccc-cCCccEE
Confidence 4589999999999998887754 3489999999999999998876432 222221 12221 222 5789999
Q ss_pred eecccccCCCCHHHHHHHHHHHHhc--cCCeEEEEcCC
Q 015771 109 IASYVLGEVPSLQDRITIVRQLWDL--TRDVLVLVEPG 144 (400)
Q Consensus 109 ias~~L~eL~~~~~r~~~i~~Lw~~--~gG~LVlVE~G 144 (400)
++..+|++++ ...+..+++++.+. +||.|+|+...
T Consensus 189 ~~~~~~~~~~-~~~~~~~l~~~~~~LkpgG~l~i~~~~ 225 (286)
T 3m70_A 189 VSTVVFMFLN-RERVPSIIKNMKEHTNVGGYNLIVAAM 225 (286)
T ss_dssp EECSSGGGSC-GGGHHHHHHHHHHTEEEEEEEEEEEEB
T ss_pred EEccchhhCC-HHHHHHHHHHHHHhcCCCcEEEEEEec
Confidence 9999999996 45556677777664 89998887653
|
| >2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.02 E-value=5.2e-10 Score=100.77 Aligned_cols=108 Identities=13% Similarity=0.134 Sum_probs=76.1
Q ss_pred CCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCCCCceeechhhhHhhhhcccCCCcccEEe
Q 015771 30 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDISKSEREHDLVI 109 (400)
Q Consensus 30 ~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~~~~~~~~~~~~~l~~~l~~~~~~~DLVi 109 (400)
.+.+|||+|||+|..+..++..-. .+++++|.|+.|++.++..+....++.++.. ++. .++...++||+|+
T Consensus 42 ~~~~vLdiGcG~G~~~~~l~~~~~---~~v~~~D~s~~~~~~a~~~~~~~~~i~~~~~-----d~~-~~~~~~~~fD~v~ 112 (215)
T 2pxx_A 42 PEDRILVLGCGNSALSYELFLGGF---PNVTSVDYSSVVVAAMQACYAHVPQLRWETM-----DVR-KLDFPSASFDVVL 112 (215)
T ss_dssp TTCCEEEETCTTCSHHHHHHHTTC---CCEEEEESCHHHHHHHHHHTTTCTTCEEEEC-----CTT-SCCSCSSCEEEEE
T ss_pred CCCeEEEECCCCcHHHHHHHHcCC---CcEEEEeCCHHHHHHHHHhcccCCCcEEEEc-----chh-cCCCCCCcccEEE
Confidence 347999999999999888776422 3899999999999999998765333333322 122 1233456899999
Q ss_pred ecccccCCC------------CHHHHHHHHHHHHhc--cCCeEEEEcCCCC
Q 015771 110 ASYVLGEVP------------SLQDRITIVRQLWDL--TRDVLVLVEPGTP 146 (400)
Q Consensus 110 as~~L~eL~------------~~~~r~~~i~~Lw~~--~gG~LVlVE~Gtp 146 (400)
+..+++.+. .......+++++.+. +||.+++++++.+
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~~ 163 (215)
T 2pxx_A 113 EKGTLDALLAGERDPWTVSSEGVHTVDQVLSEVSRVLVPGGRFISMTSAAP 163 (215)
T ss_dssp EESHHHHHTTTCSCTTSCCHHHHHHHHHHHHHHHHHEEEEEEEEEEESCCH
T ss_pred ECcchhhhccccccccccccchhHHHHHHHHHHHHhCcCCCEEEEEeCCCc
Confidence 988886654 123445566666653 8999999998764
|
| >3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.01 E-value=4.1e-10 Score=108.03 Aligned_cols=48 Identities=15% Similarity=0.307 Sum_probs=41.2
Q ss_pred CCCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcC
Q 015771 29 FSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQG 78 (400)
Q Consensus 29 ~~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~ 78 (400)
+.+.+|||+|||+|..+..++..++. .+|++||+|+.|++.|++.+..
T Consensus 45 ~~~~~VLDiGCG~G~~~~~la~~~~~--~~v~gvDis~~~i~~A~~~~~~ 92 (292)
T 3g07_A 45 FRGRDVLDLGCNVGHLTLSIACKWGP--SRMVGLDIDSRLIHSARQNIRH 92 (292)
T ss_dssp TTTSEEEEESCTTCHHHHHHHHHTCC--SEEEEEESCHHHHHHHHHTC--
T ss_pred cCCCcEEEeCCCCCHHHHHHHHHcCC--CEEEEECCCHHHHHHHHHHHHh
Confidence 45689999999999999999988863 5899999999999999988654
|
| >2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=99.01 E-value=1.1e-09 Score=98.59 Aligned_cols=107 Identities=12% Similarity=0.067 Sum_probs=74.9
Q ss_pred CCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCC-CCCCceeechhhhHhhhhcccCCCcccEEe
Q 015771 31 PAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGP-KDLPLIHSYNSIQALNKDISKSEREHDLVI 109 (400)
Q Consensus 31 p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~-~~~~~~~~~~~~~~l~~~l~~~~~~~DLVi 109 (400)
+.+|||+|||+|..+..+... ...+|+++|.|+.|++.++..+... .++.++.. ++. .++...++||+|+
T Consensus 24 ~~~vLDiGcG~G~~~~~~~~~---~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~-----d~~-~~~~~~~~fD~v~ 94 (209)
T 2p8j_A 24 DKTVLDCGAGGDLPPLSIFVE---DGYKTYGIEISDLQLKKAENFSRENNFKLNISKG-----DIR-KLPFKDESMSFVY 94 (209)
T ss_dssp CSEEEEESCCSSSCTHHHHHH---TTCEEEEEECCHHHHHHHHHHHHHHTCCCCEEEC-----CTT-SCCSCTTCEEEEE
T ss_pred CCEEEEECCCCCHHHHHHHHh---CCCEEEEEECCHHHHHHHHHHHHhcCCceEEEEC-----chh-hCCCCCCceeEEE
Confidence 479999999999763322222 2358999999999999999876532 12333322 122 2333457899999
Q ss_pred ecccccCCCCHHHHHHHHHHHHhc--cCCeEEEEcCCCCC
Q 015771 110 ASYVLGEVPSLQDRITIVRQLWDL--TRDVLVLVEPGTPQ 147 (400)
Q Consensus 110 as~~L~eL~~~~~r~~~i~~Lw~~--~gG~LVlVE~Gtp~ 147 (400)
+.+++++++ ..+...+++++.+. +||.+++.+...+.
T Consensus 95 ~~~~l~~~~-~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~ 133 (209)
T 2p8j_A 95 SYGTIFHMR-KNDVKEAIDEIKRVLKPGGLACINFLTTKD 133 (209)
T ss_dssp ECSCGGGSC-HHHHHHHHHHHHHHEEEEEEEEEEEEETTS
T ss_pred EcChHHhCC-HHHHHHHHHHHHHHcCCCcEEEEEEecccc
Confidence 999999985 56667777777664 89999999876543
|
| >4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A | Back alignment and structure |
|---|
Probab=99.01 E-value=4.7e-10 Score=111.85 Aligned_cols=113 Identities=16% Similarity=0.204 Sum_probs=77.9
Q ss_pred CCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCC----------CCCCceeechhhhHhhhh--
Q 015771 30 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGP----------KDLPLIHSYNSIQALNKD-- 97 (400)
Q Consensus 30 ~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~----------~~~~~~~~~~~~~~l~~~-- 97 (400)
.+.+|||+|||+|..+..++..++ ...+|+++|+|+.|++.|++.++.. .++.++... ..++...
T Consensus 83 ~~~~VLDlGcG~G~~~~~la~~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~g~~~~~~v~~~~~d--~~~l~~~~~ 159 (383)
T 4fsd_A 83 EGATVLDLGCGTGRDVYLASKLVG-EHGKVIGVDMLDNQLEVARKYVEYHAEKFFGSPSRSNVRFLKGF--IENLATAEP 159 (383)
T ss_dssp TTCEEEEESCTTSHHHHHHHHHHT-TTCEEEEEECCHHHHHHHHHTHHHHHHHHHSSTTCCCEEEEESC--TTCGGGCBS
T ss_pred CCCEEEEecCccCHHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHhhhhcccccCCCceEEEEcc--HHHhhhccc
Confidence 457999999999999988887764 2358999999999999999876421 122222221 1111100
Q ss_pred cccCCCcccEEeecccccCCCCHHHHHHHHHHHHhccCCeEEEEcCCCC
Q 015771 98 ISKSEREHDLVIASYVLGEVPSLQDRITIVRQLWDLTRDVLVLVEPGTP 146 (400)
Q Consensus 98 l~~~~~~~DLVias~~L~eL~~~~~r~~~i~~Lw~~~gG~LVlVE~Gtp 146 (400)
.+...++||+|++.++|+++++....+..+.++++ |||.|++.+....
T Consensus 160 ~~~~~~~fD~V~~~~~l~~~~d~~~~l~~~~r~Lk-pgG~l~i~~~~~~ 207 (383)
T 4fsd_A 160 EGVPDSSVDIVISNCVCNLSTNKLALFKEIHRVLR-DGGELYFSDVYAD 207 (383)
T ss_dssp CCCCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEE-EEEEEEEEEEEES
T ss_pred CCCCCCCEEEEEEccchhcCCCHHHHHHHHHHHcC-CCCEEEEEEeccc
Confidence 03446789999999999999876544444444443 8999999886543
|
| >3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A* | Back alignment and structure |
|---|
Probab=99.00 E-value=3e-09 Score=94.20 Aligned_cols=120 Identities=13% Similarity=0.119 Sum_probs=73.3
Q ss_pred CCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCC--CCCCceeechhhhHhhhhcccCCCcccEE
Q 015771 31 PAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGP--KDLPLIHSYNSIQALNKDISKSEREHDLV 108 (400)
Q Consensus 31 p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~--~~~~~~~~~~~~~~l~~~l~~~~~~~DLV 108 (400)
+.+|||+|||+|..+..++.. ..+|+++|.|+.|++.|++.++.. .++.++... ...+. ....++||+|
T Consensus 23 ~~~vLDiGcG~G~~~~~la~~----~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~~--~~~l~---~~~~~~fD~v 93 (185)
T 3mti_A 23 ESIVVDATMGNGNDTAFLAGL----SKKVYAFDVQEQALGKTSQRLSDLGIENTELILDG--HENLD---HYVREPIRAA 93 (185)
T ss_dssp TCEEEESCCTTSHHHHHHHTT----SSEEEEEESCHHHHHHHHHHHHHHTCCCEEEEESC--GGGGG---GTCCSCEEEE
T ss_pred CCEEEEEcCCCCHHHHHHHHh----CCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCc--HHHHH---hhccCCcCEE
Confidence 479999999999999888853 468999999999999999988642 222222211 11111 1235689999
Q ss_pred eecc-cccC-----CCCHHHHHHHHHHHHhc--cCCeEEEEcC-CCCCchHHHHHHHHHH
Q 015771 109 IASY-VLGE-----VPSLQDRITIVRQLWDL--TRDVLVLVEP-GTPQGSSIISQMRSHI 159 (400)
Q Consensus 109 ias~-~L~e-----L~~~~~r~~~i~~Lw~~--~gG~LVlVE~-Gtp~Gf~~I~~aR~~l 159 (400)
+++. .+.. .........+++++.+. |||.|+++.. +.+.|.+......+++
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~ 153 (185)
T 3mti_A 94 IFNLGYLPSADKSVITKPHTTLEAIEKILDRLEVGGRLAIMIYYGHDGGDMEKDAVLEYV 153 (185)
T ss_dssp EEEEC-----------CHHHHHHHHHHHHHHEEEEEEEEEEEC------CHHHHHHHHHH
T ss_pred EEeCCCCCCcchhcccChhhHHHHHHHHHHhcCCCcEEEEEEeCCCCCCHHHHHHHHHHH
Confidence 8773 2221 00234455666766653 8999988765 5666666555555543
|
| >3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A* | Back alignment and structure |
|---|
Probab=99.00 E-value=1.4e-09 Score=105.03 Aligned_cols=108 Identities=15% Similarity=0.226 Sum_probs=75.4
Q ss_pred CCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCC---------CCCceeechhhhHhhhh---
Q 015771 30 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK---------DLPLIHSYNSIQALNKD--- 97 (400)
Q Consensus 30 ~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~---------~~~~~~~~~~~~~l~~~--- 97 (400)
.+.+|||+|||+|..+..+... ...+|+++|+|+.|++.++..+.... ++.++.. ++...
T Consensus 34 ~~~~VLDlGcG~G~~~~~l~~~---~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~-----D~~~~~~~ 105 (313)
T 3bgv_A 34 RDITVLDLGCGKGGDLLKWKKG---RINKLVCTDIADVSVKQCQQRYEDMKNRRDSEYIFSAEFITA-----DSSKELLI 105 (313)
T ss_dssp -CCEEEEETCTTTTTHHHHHHT---TCSEEEEEESCHHHHHHHHHHHHHHHSSSCC-CCCEEEEEEC-----CTTTSCST
T ss_pred CCCEEEEECCCCcHHHHHHHhc---CCCEEEEEeCCHHHHHHHHHHHHHhhhcccccccceEEEEEe-----cccccchh
Confidence 4579999999999887776652 24689999999999999988764310 1112211 12111
Q ss_pred --cccCCCcccEEeecccccCC-CCHHHHHHHHHHHHhc--cCCeEEEEcCCC
Q 015771 98 --ISKSEREHDLVIASYVLGEV-PSLQDRITIVRQLWDL--TRDVLVLVEPGT 145 (400)
Q Consensus 98 --l~~~~~~~DLVias~~L~eL-~~~~~r~~~i~~Lw~~--~gG~LVlVE~Gt 145 (400)
++...++||+|+++++|+++ .+......++.++.+. |||.|++..++.
T Consensus 106 ~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~ 158 (313)
T 3bgv_A 106 DKFRDPQMCFDICSCQFVCHYSFESYEQADMMLRNACERLSPGGYFIGTTPNS 158 (313)
T ss_dssp TTCSSTTCCEEEEEEETCGGGGGGSHHHHHHHHHHHHTTEEEEEEEEEEEECH
T ss_pred hhcccCCCCEEEEEEecchhhccCCHHHHHHHHHHHHHHhCCCcEEEEecCCh
Confidence 11123589999999999988 5556666788887764 899999987653
|
| >4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A* | Back alignment and structure |
|---|
Probab=98.98 E-value=8.4e-10 Score=110.83 Aligned_cols=117 Identities=16% Similarity=0.246 Sum_probs=78.9
Q ss_pred HHHHHHHHHCCCCCCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCCCCceeechhhhHhhh
Q 015771 17 LVTESFARRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNK 96 (400)
Q Consensus 17 ~vL~el~~rlp~~~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~~~~~~~~~~~~~l~~ 96 (400)
+....+..+++.-.+.+|||+|||+|..+..+.+. ..+++++|+|+.|++.|++. +.+...... ......
T Consensus 94 ~~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~----g~~v~gvD~s~~~~~~a~~~-----~~~~~~~~~-~~~~~~ 163 (416)
T 4e2x_A 94 MLARDFLATELTGPDPFIVEIGCNDGIMLRTIQEA----GVRHLGFEPSSGVAAKAREK-----GIRVRTDFF-EKATAD 163 (416)
T ss_dssp HHHHHHHHTTTCSSSCEEEEETCTTTTTHHHHHHT----TCEEEEECCCHHHHHHHHTT-----TCCEECSCC-SHHHHH
T ss_pred HHHHHHHHHhCCCCCCEEEEecCCCCHHHHHHHHc----CCcEEEECCCHHHHHHHHHc-----CCCcceeee-chhhHh
Confidence 34455555554334579999999999988887753 34899999999999999875 122111111 111122
Q ss_pred hcccCCCcccEEeecccccCCCCHHHHHHHHHHHHhccCCeEEEEcCC
Q 015771 97 DISKSEREHDLVIASYVLGEVPSLQDRITIVRQLWDLTRDVLVLVEPG 144 (400)
Q Consensus 97 ~l~~~~~~~DLVias~~L~eL~~~~~r~~~i~~Lw~~~gG~LVlVE~G 144 (400)
.++...++||+|++.++|+++++...-...+.++++ +||.|++..+.
T Consensus 164 ~l~~~~~~fD~I~~~~vl~h~~d~~~~l~~~~r~Lk-pgG~l~i~~~~ 210 (416)
T 4e2x_A 164 DVRRTEGPANVIYAANTLCHIPYVQSVLEGVDALLA-PDGVFVFEDPY 210 (416)
T ss_dssp HHHHHHCCEEEEEEESCGGGCTTHHHHHHHHHHHEE-EEEEEEEEEEC
T ss_pred hcccCCCCEEEEEECChHHhcCCHHHHHHHHHHHcC-CCeEEEEEeCC
Confidence 233345789999999999999876555555555553 79999987664
|
| >1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=98.98 E-value=2.8e-09 Score=97.31 Aligned_cols=106 Identities=14% Similarity=0.197 Sum_probs=73.3
Q ss_pred HHHHHHHHCCCCCCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCCCCceeechhhhHhhhh
Q 015771 18 VTESFARRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKD 97 (400)
Q Consensus 18 vL~el~~rlp~~~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~~~~~~~~~~~~~l~~~ 97 (400)
.+..+....+ +.+|||+|||+|..+..+.. . +++|.|+.|++.++.. ++.++.. ++. .
T Consensus 38 ~~~~l~~~~~---~~~vLDiG~G~G~~~~~l~~----~----~~vD~s~~~~~~a~~~-----~~~~~~~-----d~~-~ 95 (219)
T 1vlm_A 38 ELQAVKCLLP---EGRGVEIGVGTGRFAVPLKI----K----IGVEPSERMAEIARKR-----GVFVLKG-----TAE-N 95 (219)
T ss_dssp HHHHHHHHCC---SSCEEEETCTTSTTHHHHTC----C----EEEESCHHHHHHHHHT-----TCEEEEC-----BTT-B
T ss_pred HHHHHHHhCC---CCcEEEeCCCCCHHHHHHHH----H----hccCCCHHHHHHHHhc-----CCEEEEc-----ccc-c
Confidence 3444555544 57999999999998877652 1 9999999999999875 2222221 121 2
Q ss_pred cccCCCcccEEeecccccCCCCHHHHHHHHHHHHhccCCeEEEEcCCCC
Q 015771 98 ISKSEREHDLVIASYVLGEVPSLQDRITIVRQLWDLTRDVLVLVEPGTP 146 (400)
Q Consensus 98 l~~~~~~~DLVias~~L~eL~~~~~r~~~i~~Lw~~~gG~LVlVE~Gtp 146 (400)
++...++||+|++.++|+++++.......+.++++ +||.|++.++...
T Consensus 96 ~~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~-pgG~l~i~~~~~~ 143 (219)
T 1vlm_A 96 LPLKDESFDFALMVTTICFVDDPERALKEAYRILK-KGGYLIVGIVDRE 143 (219)
T ss_dssp CCSCTTCEEEEEEESCGGGSSCHHHHHHHHHHHEE-EEEEEEEEEECSS
T ss_pred CCCCCCCeeEEEEcchHhhccCHHHHHHHHHHHcC-CCcEEEEEEeCCc
Confidence 33345689999999999999866544444444443 7999999887543
|
| >1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=98.97 E-value=5e-09 Score=97.26 Aligned_cols=120 Identities=16% Similarity=0.170 Sum_probs=78.7
Q ss_pred HHHHHHHHHHHHHHCCCCCCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCC-CCCceeechh
Q 015771 12 LLFTLLVTESFARRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK-DLPLIHSYNS 90 (400)
Q Consensus 12 Ya~~~~vL~el~~rlp~~~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~-~~~~~~~~~~ 90 (400)
|......+.++........+.+|||+|||+|..+..+++. ..+|+++|.|+.|++.|+..+.... ++.++..
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~----~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~--- 95 (252)
T 1wzn_A 23 VKAEIDFVEEIFKEDAKREVRRVLDLACGTGIPTLELAER----GYEVVGLDLHEEMLRVARRKAKERNLKIEFLQG--- 95 (252)
T ss_dssp HHHHHHHHHHHHHHTCSSCCCEEEEETCTTCHHHHHHHHT----TCEEEEEESCHHHHHHHHHHHHHTTCCCEEEES---
T ss_pred hHHHHHHHHHHHHHhcccCCCEEEEeCCCCCHHHHHHHHC----CCeEEEEECCHHHHHHHHHHHHhcCCceEEEEC---
Confidence 3334445555555544445679999999999998887753 3589999999999999998875432 2222222
Q ss_pred hhHhhhhcccCCCcccEEeecc-cccCCCCHHHHHHHHHHHHhc--cCCeEEEEcC
Q 015771 91 IQALNKDISKSEREHDLVIASY-VLGEVPSLQDRITIVRQLWDL--TRDVLVLVEP 143 (400)
Q Consensus 91 ~~~l~~~l~~~~~~~DLVias~-~L~eL~~~~~r~~~i~~Lw~~--~gG~LVlVE~ 143 (400)
++. .++ ..++||+|++.+ +++.+ +..+...+++++.+. |||.+|+--+
T Consensus 96 --d~~-~~~-~~~~fD~v~~~~~~~~~~-~~~~~~~~l~~~~~~L~pgG~li~~~~ 146 (252)
T 1wzn_A 96 --DVL-EIA-FKNEFDAVTMFFSTIMYF-DEEDLRKLFSKVAEALKPGGVFITDFP 146 (252)
T ss_dssp --CGG-GCC-CCSCEEEEEECSSGGGGS-CHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred --Chh-hcc-cCCCccEEEEcCCchhcC-CHHHHHHHHHHHHHHcCCCeEEEEecc
Confidence 222 122 235799999875 34444 355666677776654 7999886443
|
| >2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=98.97 E-value=3.6e-09 Score=92.62 Aligned_cols=105 Identities=11% Similarity=0.079 Sum_probs=71.3
Q ss_pred HHHHCCCCCCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCC--CCCceeechhhhHhhhhcc
Q 015771 22 FARRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK--DLPLIHSYNSIQALNKDIS 99 (400)
Q Consensus 22 l~~rlp~~~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~--~~~~~~~~~~~~~l~~~l~ 99 (400)
+...+....+.+|||+|||+|..+..++. ...+++++|.|+.|++.++..+.... ++.++.. ++...+
T Consensus 27 ~~~~~~~~~~~~vLdiG~G~G~~~~~l~~----~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~-----d~~~~~- 96 (183)
T 2yxd_A 27 SIGKLNLNKDDVVVDVGCGSGGMTVEIAK----RCKFVYAIDYLDGAIEVTKQNLAKFNIKNCQIIKG-----RAEDVL- 96 (183)
T ss_dssp HHHHHCCCTTCEEEEESCCCSHHHHHHHT----TSSEEEEEECSHHHHHHHHHHHHHTTCCSEEEEES-----CHHHHG-
T ss_pred HHHHcCCCCCCEEEEeCCCCCHHHHHHHh----cCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEEC-----Cccccc-
Confidence 33333334557999999999999888875 35689999999999999998876432 2222221 222222
Q ss_pred cCCCcccEEeecccccCCCCHHHHHHHHHHHHhccCCeEEEEcCC
Q 015771 100 KSEREHDLVIASYVLGEVPSLQDRITIVRQLWDLTRDVLVLVEPG 144 (400)
Q Consensus 100 ~~~~~~DLVias~~L~eL~~~~~r~~~i~~Lw~~~gG~LVlVE~G 144 (400)
..++||+|++..+ .... .+++.+.+.+||.++++.+.
T Consensus 97 -~~~~~D~i~~~~~----~~~~---~~l~~~~~~~gG~l~~~~~~ 133 (183)
T 2yxd_A 97 -DKLEFNKAFIGGT----KNIE---KIIEILDKKKINHIVANTIV 133 (183)
T ss_dssp -GGCCCSEEEECSC----SCHH---HHHHHHHHTTCCEEEEEESC
T ss_pred -cCCCCcEEEECCc----ccHH---HHHHHHhhCCCCEEEEEecc
Confidence 2368999999988 2233 34444444489999999864
|
| >2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A* | Back alignment and structure |
|---|
Probab=98.96 E-value=7.1e-10 Score=103.46 Aligned_cols=109 Identities=13% Similarity=0.137 Sum_probs=73.9
Q ss_pred CCCCCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCC-------------------------
Q 015771 27 PGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKD------------------------- 81 (400)
Q Consensus 27 p~~~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~------------------------- 81 (400)
+..++.+|||+|||+|..+..++... ..+|+++|.|+.|++.+++.+....+
T Consensus 53 ~~~~~~~vLDlGcG~G~~~~~l~~~~---~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (265)
T 2i62_A 53 GAVKGELLIDIGSGPTIYQLLSACES---FTEIIVSDYTDQNLWELQKWLKKEPGAFDWSPVVTYVCDLEGNRMKGPEKE 129 (265)
T ss_dssp SSCCEEEEEEESCTTCCGGGTTGGGT---EEEEEEEESCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHTTTCSCHHHHH
T ss_pred cccCCCEEEEECCCccHHHHHHhhcc---cCeEEEecCCHHHHHHHHHHHhcCCccccchhhhhhhhcccccccchHHHH
Confidence 45566899999999998876655322 24899999999999999988765321
Q ss_pred ------C-CceeechhhhHhhhhcccCC---CcccEEeecccccCCCC-HHHHHHHHHHHHhc--cCCeEEEEcC
Q 015771 82 ------L-PLIHSYNSIQALNKDISKSE---REHDLVIASYVLGEVPS-LQDRITIVRQLWDL--TRDVLVLVEP 143 (400)
Q Consensus 82 ------~-~~~~~~~~~~~l~~~l~~~~---~~~DLVias~~L~eL~~-~~~r~~~i~~Lw~~--~gG~LVlVE~ 143 (400)
+ .++. .++....+... ++||+|++.++|+.++. ..+...+++++.+. |||.||+++.
T Consensus 130 ~~l~~~v~~~~~-----~d~~~~~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~ 199 (265)
T 2i62_A 130 EKLRRAIKQVLK-----CDVTQSQPLGGVSLPPADCLLSTLCLDAACPDLPAYRTALRNLGSLLKPGGFLVMVDA 199 (265)
T ss_dssp HHHHHHEEEEEE-----CCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred HHhhhhheeEEE-----eeeccCCCCCccccCCccEEEEhhhhhhhcCChHHHHHHHHHHHhhCCCCcEEEEEec
Confidence 1 1111 11221111123 68999999999985532 33556677777664 8999999874
|
| >3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A* | Back alignment and structure |
|---|
Probab=98.96 E-value=2.1e-09 Score=102.89 Aligned_cols=104 Identities=16% Similarity=0.205 Sum_probs=74.3
Q ss_pred CCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCC-----CCCceeechhhhHhhhhcccCCCc
Q 015771 30 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK-----DLPLIHSYNSIQALNKDISKSERE 104 (400)
Q Consensus 30 ~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~-----~~~~~~~~~~~~~l~~~l~~~~~~ 104 (400)
.+.+|||+|||+|..+..++.. ..+|+++|+|+.|++.|++.+.... ++.++.. ++. .++. .++
T Consensus 82 ~~~~vLDlGcG~G~~~~~l~~~----~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~-----d~~-~~~~-~~~ 150 (299)
T 3g2m_A 82 VSGPVLELAAGMGRLTFPFLDL----GWEVTALELSTSVLAAFRKRLAEAPADVRDRCTLVQG-----DMS-AFAL-DKR 150 (299)
T ss_dssp CCSCEEEETCTTTTTHHHHHTT----TCCEEEEESCHHHHHHHHHHHHTSCHHHHTTEEEEEC-----BTT-BCCC-SCC
T ss_pred CCCcEEEEeccCCHHHHHHHHc----CCeEEEEECCHHHHHHHHHHHhhcccccccceEEEeC-----chh-cCCc-CCC
Confidence 3459999999999998888743 3579999999999999999886542 2222222 222 2232 578
Q ss_pred ccEEeec-ccccCCCCHHHHHHHHHHHHhc--cCCeEEEEcCCC
Q 015771 105 HDLVIAS-YVLGEVPSLQDRITIVRQLWDL--TRDVLVLVEPGT 145 (400)
Q Consensus 105 ~DLVias-~~L~eL~~~~~r~~~i~~Lw~~--~gG~LVlVE~Gt 145 (400)
||+|+++ .+++.+ +..++..+++++.+. |||.|+|..+..
T Consensus 151 fD~v~~~~~~~~~~-~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 193 (299)
T 3g2m_A 151 FGTVVISSGSINEL-DEADRRGLYASVREHLEPGGKFLLSLAMS 193 (299)
T ss_dssp EEEEEECHHHHTTS-CHHHHHHHHHHHHHHEEEEEEEEEEEECC
T ss_pred cCEEEECCcccccC-CHHHHHHHHHHHHHHcCCCcEEEEEeecC
Confidence 9999976 456655 466677777777764 899999887643
|
| >3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=98.96 E-value=3.5e-09 Score=103.71 Aligned_cols=121 Identities=12% Similarity=0.135 Sum_probs=83.3
Q ss_pred HHHHHCCCCC-CCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCCCCceeechhhhHhhhhcc
Q 015771 21 SFARRLPGFS-PAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDIS 99 (400)
Q Consensus 21 el~~rlp~~~-p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~~~~~~~~~~~~~l~~~l~ 99 (400)
++...++... +.+|||+|||+|..+.++.+.+|. .+++++|. +.|++.++..+........+... ..++....+
T Consensus 169 ~~l~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~--~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~--~~d~~~~~~ 243 (352)
T 3mcz_A 169 DVVSELGVFARARTVIDLAGGHGTYLAQVLRRHPQ--LTGQIWDL-PTTRDAARKTIHAHDLGGRVEFF--EKNLLDARN 243 (352)
T ss_dssp HHHHTCGGGTTCCEEEEETCTTCHHHHHHHHHCTT--CEEEEEEC-GGGHHHHHHHHHHTTCGGGEEEE--ECCTTCGGG
T ss_pred HHHHhCCCcCCCCEEEEeCCCcCHHHHHHHHhCCC--CeEEEEEC-HHHHHHHHHHHHhcCCCCceEEE--eCCcccCcc
Confidence 4555554334 689999999999999999988873 68999999 78999998877543211111110 011211110
Q ss_pred cCCCcccEEeecccccCCCCHHHHHHHHHHHHhc--cCCeEEEEcCCCCC
Q 015771 100 KSEREHDLVIASYVLGEVPSLQDRITIVRQLWDL--TRDVLVLVEPGTPQ 147 (400)
Q Consensus 100 ~~~~~~DLVias~~L~eL~~~~~r~~~i~~Lw~~--~gG~LVlVE~Gtp~ 147 (400)
...+.||+|++.++|++++ ..+...+++++.+. |||.|+|+|...+.
T Consensus 244 ~~~~~~D~v~~~~vlh~~~-~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~ 292 (352)
T 3mcz_A 244 FEGGAADVVMLNDCLHYFD-AREAREVIGHAAGLVKPGGALLILTMTMND 292 (352)
T ss_dssp GTTCCEEEEEEESCGGGSC-HHHHHHHHHHHHHTEEEEEEEEEEEECCCT
T ss_pred cCCCCccEEEEecccccCC-HHHHHHHHHHHHHHcCCCCEEEEEEeccCC
Confidence 1335699999999999996 55566778877764 89999999975443
|
| >2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus} | Back alignment and structure |
|---|
Probab=98.94 E-value=8.1e-10 Score=106.91 Aligned_cols=108 Identities=10% Similarity=0.111 Sum_probs=69.2
Q ss_pred CCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCC--------CCceeech----hhhHhhhhc
Q 015771 31 PAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKD--------LPLIHSYN----SIQALNKDI 98 (400)
Q Consensus 31 p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~--------~~~~~~~~----~~~~l~~~l 98 (400)
+.+|||+|||+|..+..+.. ....+|+++|+|+.|++.|+........ +.+..... ...++..
T Consensus 49 ~~~VLDlGCG~G~~l~~~~~---~~~~~v~GiD~S~~~l~~A~~~~~~~~~~~~~~~~~~~f~~~d~~~d~~~~~l~~-- 123 (302)
T 2vdw_A 49 KRKVLAIDFGNGADLEKYFY---GEIALLVATDPDADAIARGNERYNKLNSGIKTKYYKFDYIQETIRSDTFVSSVRE-- 123 (302)
T ss_dssp CCEEEETTCTTTTTHHHHHH---TTCSEEEEEESCHHHHHHHHHHHHHHCC----CCCEEEEEECCTTSSSHHHHHHT--
T ss_pred CCeEEEEecCCcHhHHHHHh---cCCCeEEEEECCHHHHHHHHHHHHhccccccccccccchhhhhcccchhhhhhhc--
Confidence 47999999999964443322 1346899999999999999987653211 00111100 0011111
Q ss_pred ccCCCcccEEeecccccCCCCHHHHHHHHHHHHhc--cCCeEEEEcC
Q 015771 99 SKSEREHDLVIASYVLGEVPSLQDRITIVRQLWDL--TRDVLVLVEP 143 (400)
Q Consensus 99 ~~~~~~~DLVias~~L~eL~~~~~r~~~i~~Lw~~--~gG~LVlVE~ 143 (400)
+...++||+|+|.++|+++.+..+...+++++.+. |||+||+..+
T Consensus 124 ~~~~~~FD~V~~~~~lhy~~~~~~~~~~l~~~~r~LkpGG~~i~~~~ 170 (302)
T 2vdw_A 124 VFYFGKFNIIDWQFAIHYSFHPRHYATVMNNLSELTASGGKVLITTM 170 (302)
T ss_dssp TCCSSCEEEEEEESCGGGTCSTTTHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred cccCCCeeEEEECchHHHhCCHHHHHHHHHHHHHHcCCCCEEEEEeC
Confidence 12356899999999998764333445677777664 8999998765
|
| >3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=98.94 E-value=1.4e-09 Score=104.58 Aligned_cols=108 Identities=17% Similarity=0.133 Sum_probs=79.5
Q ss_pred CCCeEEEEccchhHHHHHHH-HHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCC---CCceeechhhhHhhhhcccCCCcc
Q 015771 30 SPAKVLDFGAGTGSAFWALR-EVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKD---LPLIHSYNSIQALNKDISKSEREH 105 (400)
Q Consensus 30 ~p~~VLDvG~G~Gt~~~Al~-~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~---~~~~~~~~~~~~l~~~l~~~~~~~ 105 (400)
.+.+|||+|||+|..+..++ ...+ ..+|+++|.|+.|++.++..+..... +.++. .++. .++.. ++|
T Consensus 118 ~~~~vLDiGcG~G~~~~~la~~~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~-----~d~~-~~~~~-~~f 188 (305)
T 3ocj_A 118 PGCVVASVPCGWMSELLALDYSACP--GVQLVGIDYDPEALDGATRLAAGHALAGQITLHR-----QDAW-KLDTR-EGY 188 (305)
T ss_dssp TTCEEEETTCTTCHHHHTSCCTTCT--TCEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEE-----CCGG-GCCCC-SCE
T ss_pred CCCEEEEecCCCCHHHHHHHHhcCC--CCeEEEEECCHHHHHHHHHHHHhcCCCCceEEEE-----Cchh-cCCcc-CCe
Confidence 34799999999999887764 2332 46899999999999999998875421 11222 1222 23333 789
Q ss_pred cEEeecccccCCCCHHHHHHHHHHHHhc--cCCeEEEEcCCCC
Q 015771 106 DLVIASYVLGEVPSLQDRITIVRQLWDL--TRDVLVLVEPGTP 146 (400)
Q Consensus 106 DLVias~~L~eL~~~~~r~~~i~~Lw~~--~gG~LVlVE~Gtp 146 (400)
|+|++..+++++++......+++++.+. |||.|++.+...+
T Consensus 189 D~v~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~ 231 (305)
T 3ocj_A 189 DLLTSNGLNIYEPDDARVTELYRRFWQALKPGGALVTSFLTPP 231 (305)
T ss_dssp EEEECCSSGGGCCCHHHHHHHHHHHHHHEEEEEEEEEECCCCC
T ss_pred EEEEECChhhhcCCHHHHHHHHHHHHHhcCCCeEEEEEecCCC
Confidence 9999999999998887766677777653 8999999986654
|
| >3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405} | Back alignment and structure |
|---|
Probab=98.94 E-value=5e-09 Score=93.70 Aligned_cols=122 Identities=12% Similarity=0.054 Sum_probs=79.4
Q ss_pred CCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCC---CCCceeechhhhHhhhhcccCCCcccE
Q 015771 31 PAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK---DLPLIHSYNSIQALNKDISKSEREHDL 107 (400)
Q Consensus 31 p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~---~~~~~~~~~~~~~l~~~l~~~~~~~DL 107 (400)
..+|||+|||+|..+..++..++. ..+|+++|.|+.|++.|++.+.... ++.++.. +.........++||+
T Consensus 23 ~~~vLDlGcG~G~~~~~l~~~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~-----d~~~~~~~~~~~fD~ 96 (197)
T 3eey_A 23 GDTVVDATCGNGNDTAFLASLVGE-NGRVFGFDIQDKAIANTTKKLTDLNLIDRVTLIKD-----GHQNMDKYIDCPVKA 96 (197)
T ss_dssp TCEEEESCCTTSHHHHHHHHHHCT-TCEEEEECSCHHHHHHHHHHHHHTTCGGGEEEECS-----CGGGGGGTCCSCEEE
T ss_pred CCEEEEcCCCCCHHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEEC-----CHHHHhhhccCCceE
Confidence 369999999999999888877642 3489999999999999999876532 1222221 121111123468999
Q ss_pred EeecccccC------CCCHHHHHHHHHHHHhc--cCCeEEEEcC-CCCCchHHHHHHHHH
Q 015771 108 VIASYVLGE------VPSLQDRITIVRQLWDL--TRDVLVLVEP-GTPQGSSIISQMRSH 158 (400)
Q Consensus 108 Vias~~L~e------L~~~~~r~~~i~~Lw~~--~gG~LVlVE~-Gtp~Gf~~I~~aR~~ 158 (400)
|++...+.. +........++.++.+. +||.|+++.. +.+.+........++
T Consensus 97 v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~~~~~~~~~~ 156 (197)
T 3eey_A 97 VMFNLGYLPSGDHSISTRPETTIQALSKAMELLVTGGIITVVIYYGGDTGFEEKEKVLEF 156 (197)
T ss_dssp EEEEESBCTTSCTTCBCCHHHHHHHHHHHHHHEEEEEEEEEEECCBTTTBSHHHHHHHHH
T ss_pred EEEcCCcccCcccccccCcccHHHHHHHHHHhCcCCCEEEEEEccCCCCcHHHHHHHHHH
Confidence 998876511 11233445567666653 8999998874 455665555444444
|
| >3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A* | Back alignment and structure |
|---|
Probab=98.94 E-value=1.6e-08 Score=100.12 Aligned_cols=117 Identities=18% Similarity=0.268 Sum_probs=84.6
Q ss_pred HHHHHHHCCCCCCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCC---CCCceeechhhhHhh
Q 015771 19 TESFARRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK---DLPLIHSYNSIQALN 95 (400)
Q Consensus 19 L~el~~rlp~~~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~---~~~~~~~~~~~~~l~ 95 (400)
+..+...++.-.+.+|||+|||+|..+.++++.+|. .+++++|. +.|++.|+..+.... ++.++.. ++.
T Consensus 191 ~~~l~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~--~~~~~~D~-~~~~~~a~~~~~~~~l~~~v~~~~~-----d~~ 262 (369)
T 3gwz_A 191 AGQVAAAYDFSGAATAVDIGGGRGSLMAAVLDAFPG--LRGTLLER-PPVAEEARELLTGRGLADRCEILPG-----DFF 262 (369)
T ss_dssp HHHHHHHSCCTTCSEEEEETCTTSHHHHHHHHHCTT--CEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEEC-----CTT
T ss_pred HHHHHHhCCCccCcEEEEeCCCccHHHHHHHHHCCC--CeEEEEcC-HHHHHHHHHhhhhcCcCCceEEecc-----CCC
Confidence 445555554334579999999999999999988863 58999999 999999998775432 1222221 222
Q ss_pred hhcccCCCcccEEeecccccCCCCHHHHHHHHHHHHhc--cCCeEEEEcCCCCC
Q 015771 96 KDISKSEREHDLVIASYVLGEVPSLQDRITIVRQLWDL--TRDVLVLVEPGTPQ 147 (400)
Q Consensus 96 ~~l~~~~~~~DLVias~~L~eL~~~~~r~~~i~~Lw~~--~gG~LVlVE~Gtp~ 147 (400)
..+ + ..||+|++.++|+.++ ......+++++.+. |||.|+|+|.-.+.
T Consensus 263 ~~~--p-~~~D~v~~~~vlh~~~-d~~~~~~L~~~~~~L~pgG~l~i~e~~~~~ 312 (369)
T 3gwz_A 263 ETI--P-DGADVYLIKHVLHDWD-DDDVVRILRRIATAMKPDSRLLVIDNLIDE 312 (369)
T ss_dssp TCC--C-SSCSEEEEESCGGGSC-HHHHHHHHHHHHTTCCTTCEEEEEEEBCCS
T ss_pred CCC--C-CCceEEEhhhhhccCC-HHHHHHHHHHHHHHcCCCCEEEEEEeccCC
Confidence 112 2 2799999999999986 55566778888764 89999999976554
|
| >3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A* | Back alignment and structure |
|---|
Probab=98.94 E-value=6.5e-09 Score=101.17 Aligned_cols=109 Identities=15% Similarity=0.132 Sum_probs=76.6
Q ss_pred CCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCCCCceeechhhhHhhhhcccCCCcccEEee
Q 015771 31 PAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDISKSEREHDLVIA 110 (400)
Q Consensus 31 p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~~~~~~~~~~~~~l~~~l~~~~~~~DLVia 110 (400)
+.+|||+|||+|..+.++.+.+|. .+++++|. +.|++.|++.+....-...+... ..++...+ + ..||+|++
T Consensus 170 ~~~vlDvG~G~G~~~~~l~~~~p~--~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~--~~d~~~~~--p-~~~D~v~~ 241 (332)
T 3i53_A 170 LGHVVDVGGGSGGLLSALLTAHED--LSGTVLDL-QGPASAAHRRFLDTGLSGRAQVV--VGSFFDPL--P-AGAGGYVL 241 (332)
T ss_dssp GSEEEEETCTTSHHHHHHHHHCTT--CEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEE--ECCTTSCC--C-CSCSEEEE
T ss_pred CCEEEEeCCChhHHHHHHHHHCCC--CeEEEecC-HHHHHHHHHhhhhcCcCcCeEEe--cCCCCCCC--C-CCCcEEEE
Confidence 479999999999999999988873 48999999 99999999877543211111110 11222112 2 27999999
Q ss_pred cccccCCCCHHHHHHHHHHHHhc--cCCeEEEEcCCCCCc
Q 015771 111 SYVLGEVPSLQDRITIVRQLWDL--TRDVLVLVEPGTPQG 148 (400)
Q Consensus 111 s~~L~eL~~~~~r~~~i~~Lw~~--~gG~LVlVE~Gtp~G 148 (400)
.++|++++ ......+++++.+. |||.|+|+|.-.+..
T Consensus 242 ~~vlh~~~-~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~ 280 (332)
T 3i53_A 242 SAVLHDWD-DLSAVAILRRCAEAAGSGGVVLVIEAVAGDE 280 (332)
T ss_dssp ESCGGGSC-HHHHHHHHHHHHHHHTTTCEEEEEECCCC--
T ss_pred ehhhccCC-HHHHHHHHHHHHHhcCCCCEEEEEeecCCCC
Confidence 99999997 44455666666553 899999999865553
|
| >2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=98.93 E-value=4e-09 Score=98.92 Aligned_cols=98 Identities=20% Similarity=0.248 Sum_probs=69.4
Q ss_pred CCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCCCCceeechhhhHhhhhcccCCCcccEEe
Q 015771 30 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDISKSEREHDLVI 109 (400)
Q Consensus 30 ~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~~~~~~~~~~~~~l~~~l~~~~~~~DLVi 109 (400)
.+.+|||+|||+|..+..+++. ..+++++|+|+.|++.++..... + ++.. ++. .++...++||+|+
T Consensus 54 ~~~~vLDiGcG~G~~~~~l~~~----~~~v~gvD~s~~~l~~a~~~~~~--~--~~~~-----d~~-~~~~~~~~fD~v~ 119 (260)
T 2avn_A 54 NPCRVLDLGGGTGKWSLFLQER----GFEVVLVDPSKEMLEVAREKGVK--N--VVEA-----KAE-DLPFPSGAFEAVL 119 (260)
T ss_dssp SCCEEEEETCTTCHHHHHHHTT----TCEEEEEESCHHHHHHHHHHTCS--C--EEEC-----CTT-SCCSCTTCEEEEE
T ss_pred CCCeEEEeCCCcCHHHHHHHHc----CCeEEEEeCCHHHHHHHHhhcCC--C--EEEC-----cHH-HCCCCCCCEEEEE
Confidence 5679999999999998887743 45899999999999999987652 1 2221 121 2333457899999
Q ss_pred ecccccCC-CCHHHHHHHHHHHHhc--cCCeEEEEcCC
Q 015771 110 ASYVLGEV-PSLQDRITIVRQLWDL--TRDVLVLVEPG 144 (400)
Q Consensus 110 as~~L~eL-~~~~~r~~~i~~Lw~~--~gG~LVlVE~G 144 (400)
+.+++.++ ++. ..+++++.+. +||.|++..++
T Consensus 120 ~~~~~~~~~~~~---~~~l~~~~~~LkpgG~l~~~~~~ 154 (260)
T 2avn_A 120 ALGDVLSYVENK---DKAFSEIRRVLVPDGLLIATVDN 154 (260)
T ss_dssp ECSSHHHHCSCH---HHHHHHHHHHEEEEEEEEEEEEB
T ss_pred EcchhhhccccH---HHHHHHHHHHcCCCeEEEEEeCC
Confidence 98866554 443 3445555442 79999998775
|
| >3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus} | Back alignment and structure |
|---|
Probab=98.92 E-value=7.1e-09 Score=102.50 Aligned_cols=111 Identities=17% Similarity=0.131 Sum_probs=79.7
Q ss_pred CCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCCCCceeechhhhHhhhh-cccCCCcccEE
Q 015771 30 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKD-ISKSEREHDLV 108 (400)
Q Consensus 30 ~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~~~~~~~~~~~~~l~~~-l~~~~~~~DLV 108 (400)
.+.+|||+|||+|..+.++++.+|. .+++++|. +.|++.|+..+........+... ..++... .+. .+.||+|
T Consensus 179 ~~~~vlDvG~G~G~~~~~l~~~~p~--~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~--~~d~~~~~~~~-p~~~D~v 252 (363)
T 3dp7_A 179 HPKRLLDIGGNTGKWATQCVQYNKE--VEVTIVDL-PQQLEMMRKQTAGLSGSERIHGH--GANLLDRDVPF-PTGFDAV 252 (363)
T ss_dssp CCSEEEEESCTTCHHHHHHHHHSTT--CEEEEEEC-HHHHHHHHHHHTTCTTGGGEEEE--ECCCCSSSCCC-CCCCSEE
T ss_pred CCCEEEEeCCCcCHHHHHHHHhCCC--CEEEEEeC-HHHHHHHHHHHHhcCcccceEEE--EccccccCCCC-CCCcCEE
Confidence 4579999999999999999988874 48999999 99999999988654211112110 0112111 011 2689999
Q ss_pred eecccccCCCCHHHHHHHHHHHHhc--cCCeEEEEcCCCCC
Q 015771 109 IASYVLGEVPSLQDRITIVRQLWDL--TRDVLVLVEPGTPQ 147 (400)
Q Consensus 109 ias~~L~eL~~~~~r~~~i~~Lw~~--~gG~LVlVE~Gtp~ 147 (400)
++.++|+.++ ..+...+++++.+. |||.|+|+|.-.+.
T Consensus 253 ~~~~vlh~~~-~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~ 292 (363)
T 3dp7_A 253 WMSQFLDCFS-EEEVISILTRVAQSIGKDSKVYIMETLWDR 292 (363)
T ss_dssp EEESCSTTSC-HHHHHHHHHHHHHHCCTTCEEEEEECCTTS
T ss_pred EEechhhhCC-HHHHHHHHHHHHHhcCCCcEEEEEeeccCC
Confidence 9999999987 45566677777663 89999999975544
|
| >1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7 | Back alignment and structure |
|---|
Probab=98.92 E-value=9.9e-09 Score=94.10 Aligned_cols=108 Identities=19% Similarity=0.125 Sum_probs=75.0
Q ss_pred HHHHHCCCCCCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCCCCceeechhhhHhhhhccc
Q 015771 21 SFARRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDISK 100 (400)
Q Consensus 21 el~~rlp~~~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~~~~~~~~~~~~~l~~~l~~ 100 (400)
.+...+....+.+|||+|||+|..+..++... .+|+++|.|+.|++.++..+....++.++.. +....++
T Consensus 61 ~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~----~~v~~vD~~~~~~~~a~~~~~~~~~v~~~~~-----d~~~~~~- 130 (231)
T 1vbf_A 61 FMLDELDLHKGQKVLEIGTGIGYYTALIAEIV----DKVVSVEINEKMYNYASKLLSYYNNIKLILG-----DGTLGYE- 130 (231)
T ss_dssp HHHHHTTCCTTCEEEEECCTTSHHHHHHHHHS----SEEEEEESCHHHHHHHHHHHTTCSSEEEEES-----CGGGCCG-
T ss_pred HHHHhcCCCCCCEEEEEcCCCCHHHHHHHHHc----CEEEEEeCCHHHHHHHHHHHhhcCCeEEEEC-----Ccccccc-
Confidence 34444433345799999999999988887653 5899999999999999998875432222221 2222122
Q ss_pred CCCcccEEeecccccCCCCHHHHHHHHHHHHhccCCeEEEEcCCC
Q 015771 101 SEREHDLVIASYVLGEVPSLQDRITIVRQLWDLTRDVLVLVEPGT 145 (400)
Q Consensus 101 ~~~~~DLVias~~L~eL~~~~~r~~~i~~Lw~~~gG~LVlVE~Gt 145 (400)
..++||+|++..++++++. .+.+++ ++||.|+++.+..
T Consensus 131 ~~~~fD~v~~~~~~~~~~~------~~~~~L-~pgG~l~~~~~~~ 168 (231)
T 1vbf_A 131 EEKPYDRVVVWATAPTLLC------KPYEQL-KEGGIMILPIGVG 168 (231)
T ss_dssp GGCCEEEEEESSBBSSCCH------HHHHTE-EEEEEEEEEECSS
T ss_pred cCCCccEEEECCcHHHHHH------HHHHHc-CCCcEEEEEEcCC
Confidence 3468999999999999862 133333 3799999997654
|
| >3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15} | Back alignment and structure |
|---|
Probab=98.91 E-value=1e-08 Score=94.23 Aligned_cols=111 Identities=15% Similarity=0.134 Sum_probs=77.8
Q ss_pred HHHHHHHHCCCCCCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCC-CCCceeechhhhHhhh
Q 015771 18 VTESFARRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK-DLPLIHSYNSIQALNK 96 (400)
Q Consensus 18 vL~el~~rlp~~~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~-~~~~~~~~~~~~~l~~ 96 (400)
.+..+...++. ..+|||+|||+|..+..++.. .+++++|.|+.|++.|+..+.... ++.++.. ++.
T Consensus 23 ~~~~~~~~~~~--~~~vLdiG~G~G~~~~~l~~~-----~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~-----d~~- 89 (243)
T 3d2l_A 23 WVAWVLEQVEP--GKRIADIGCGTGTATLLLADH-----YEVTGVDLSEEMLEIAQEKAMETNRHVDFWVQ-----DMR- 89 (243)
T ss_dssp HHHHHHHHSCT--TCEEEEESCTTCHHHHHHTTT-----SEEEEEESCHHHHHHHHHHHHHTTCCCEEEEC-----CGG-
T ss_pred HHHHHHHHcCC--CCeEEEecCCCCHHHHHHhhC-----CeEEEEECCHHHHHHHHHhhhhcCCceEEEEc-----Chh-
Confidence 33444444432 379999999999988877632 689999999999999998875322 2322222 122
Q ss_pred hcccCCCcccEEeecc-cccCCCCHHHHHHHHHHHHhc--cCCeEEEEc
Q 015771 97 DISKSEREHDLVIASY-VLGEVPSLQDRITIVRQLWDL--TRDVLVLVE 142 (400)
Q Consensus 97 ~l~~~~~~~DLVias~-~L~eL~~~~~r~~~i~~Lw~~--~gG~LVlVE 142 (400)
.++. .++||+|++.+ +++++.+......+++++.+. +||.|++.-
T Consensus 90 ~~~~-~~~fD~v~~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 137 (243)
T 3d2l_A 90 ELEL-PEPVDAITILCDSLNYLQTEADVKQTFDSAARLLTDGGKLLFDV 137 (243)
T ss_dssp GCCC-SSCEEEEEECTTGGGGCCSHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred hcCC-CCCcCEEEEeCCchhhcCCHHHHHHHHHHHHHhcCCCeEEEEEc
Confidence 1222 36899999987 999997677777777777664 799988643
|
| >3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus} | Back alignment and structure |
|---|
Probab=98.90 E-value=3.3e-09 Score=96.36 Aligned_cols=110 Identities=16% Similarity=0.240 Sum_probs=77.4
Q ss_pred HHHHHHHCCCCCCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCCCCceeechhhhHhhh-h
Q 015771 19 TESFARRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNK-D 97 (400)
Q Consensus 19 L~el~~rlp~~~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~~~~~~~~~~~~~l~~-~ 97 (400)
...+...++ ..+.+|||+|||+|..+..+... + .+++++|.|+.|++.++..+.. ++.. ++.. .
T Consensus 22 ~~~l~~~~~-~~~~~vLdiG~G~G~~~~~l~~~-~---~~~~~~D~~~~~~~~~~~~~~~-----~~~~-----d~~~~~ 86 (230)
T 3cc8_A 22 NPNLLKHIK-KEWKEVLDIGCSSGALGAAIKEN-G---TRVSGIEAFPEAAEQAKEKLDH-----VVLG-----DIETMD 86 (230)
T ss_dssp CHHHHTTCC-TTCSEEEEETCTTSHHHHHHHTT-T---CEEEEEESSHHHHHHHHTTSSE-----EEES-----CTTTCC
T ss_pred HHHHHHHhc-cCCCcEEEeCCCCCHHHHHHHhc-C---CeEEEEeCCHHHHHHHHHhCCc-----EEEc-----chhhcC
Confidence 344555554 35679999999999998888754 2 6899999999999999875431 1111 1211 1
Q ss_pred cccCCCcccEEeecccccCCCCHHHHHHHHHHHHhc--cCCeEEEEcCCCC
Q 015771 98 ISKSEREHDLVIASYVLGEVPSLQDRITIVRQLWDL--TRDVLVLVEPGTP 146 (400)
Q Consensus 98 l~~~~~~~DLVias~~L~eL~~~~~r~~~i~~Lw~~--~gG~LVlVE~Gtp 146 (400)
.+...++||+|+++++|+++++.. .++.++.+. +||.+++..+...
T Consensus 87 ~~~~~~~fD~v~~~~~l~~~~~~~---~~l~~~~~~L~~gG~l~~~~~~~~ 134 (230)
T 3cc8_A 87 MPYEEEQFDCVIFGDVLEHLFDPW---AVIEKVKPYIKQNGVILASIPNVS 134 (230)
T ss_dssp CCSCTTCEEEEEEESCGGGSSCHH---HHHHHTGGGEEEEEEEEEEEECTT
T ss_pred CCCCCCccCEEEECChhhhcCCHH---HHHHHHHHHcCCCCEEEEEeCCcc
Confidence 233457899999999999998664 455555443 7999999987653
|
| >1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A* | Back alignment and structure |
|---|
Probab=98.90 E-value=8.8e-09 Score=97.65 Aligned_cols=109 Identities=12% Similarity=0.119 Sum_probs=75.6
Q ss_pred CCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCCCCceeechhhhHhhhhccc-CCCcccEE
Q 015771 30 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDISK-SEREHDLV 108 (400)
Q Consensus 30 ~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~~~~~~~~~~~~~l~~~l~~-~~~~~DLV 108 (400)
.+.+|||+|||+|..+..++.. + ..+|+++|.|+.|++.|+..+........+... ..++. .++. ..++||+|
T Consensus 64 ~~~~vLDiGcG~G~~~~~l~~~-~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~--~~d~~-~~~~~~~~~fD~v 137 (298)
T 1ri5_A 64 RGDSVLDLGCGKGGDLLKYERA-G--IGEYYGVDIAEVSINDARVRARNMKRRFKVFFR--AQDSY-GRHMDLGKEFDVI 137 (298)
T ss_dssp TTCEEEEETCTTTTTHHHHHHH-T--CSEEEEEESCHHHHHHHHHHHHTSCCSSEEEEE--ESCTT-TSCCCCSSCEEEE
T ss_pred CCCeEEEECCCCCHHHHHHHHC-C--CCEEEEEECCHHHHHHHHHHHHhcCCCccEEEE--ECCcc-ccccCCCCCcCEE
Confidence 4579999999999877766653 2 348999999999999999988654211111110 11122 1222 35689999
Q ss_pred eecccccCC-CCHHHHHHHHHHHHhc--cCCeEEEEcCC
Q 015771 109 IASYVLGEV-PSLQDRITIVRQLWDL--TRDVLVLVEPG 144 (400)
Q Consensus 109 ias~~L~eL-~~~~~r~~~i~~Lw~~--~gG~LVlVE~G 144 (400)
++.++|+++ .+......+++++.+. +||.|++..+.
T Consensus 138 ~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 176 (298)
T 1ri5_A 138 SSQFSFHYAFSTSESLDIAQRNIARHLRPGGYFIMTVPS 176 (298)
T ss_dssp EEESCGGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEEC
T ss_pred EECchhhhhcCCHHHHHHHHHHHHHhcCCCCEEEEEECC
Confidence 999999873 3455666777777764 89999998764
|
| >1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* | Back alignment and structure |
|---|
Probab=98.89 E-value=5.4e-09 Score=96.62 Aligned_cols=106 Identities=13% Similarity=0.152 Sum_probs=69.8
Q ss_pred CCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCC-CCCceeechhhhHhhhhc-ccCCCcccE
Q 015771 30 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK-DLPLIHSYNSIQALNKDI-SKSEREHDL 107 (400)
Q Consensus 30 ~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~-~~~~~~~~~~~~~l~~~l-~~~~~~~DL 107 (400)
.+.+|||+|||+|..+..++.. ...+|+++|.|+.|++.|++...... ++.++.. ++...+ +...++||+
T Consensus 60 ~~~~vLDiGcGtG~~~~~l~~~---~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~-----d~~~~~~~~~~~~fD~ 131 (236)
T 1zx0_A 60 KGGRVLEVGFGMAIAASKVQEA---PIDEHWIIECNDGVFQRLRDWAPRQTHKVIPLKG-----LWEDVAPTLPDGHFDG 131 (236)
T ss_dssp TCEEEEEECCTTSHHHHHHHTS---CEEEEEEEECCHHHHHHHHHHGGGCSSEEEEEES-----CHHHHGGGSCTTCEEE
T ss_pred CCCeEEEEeccCCHHHHHHHhc---CCCeEEEEcCCHHHHHHHHHHHHhcCCCeEEEec-----CHHHhhcccCCCceEE
Confidence 3469999999999998887632 23489999999999999999876432 1222221 122111 334578999
Q ss_pred Eee-cccccCCC--CHHHHHHHHHHHHhc--cCCeEEEEcCC
Q 015771 108 VIA-SYVLGEVP--SLQDRITIVRQLWDL--TRDVLVLVEPG 144 (400)
Q Consensus 108 Via-s~~L~eL~--~~~~r~~~i~~Lw~~--~gG~LVlVE~G 144 (400)
|++ .+++ ..+ ....+..+++++.+. |||.|++++..
T Consensus 132 V~~d~~~~-~~~~~~~~~~~~~l~~~~r~LkpgG~l~~~~~~ 172 (236)
T 1zx0_A 132 ILYDTYPL-SEETWHTHQFNFIKNHAFRLLKPGGVLTYCNLT 172 (236)
T ss_dssp EEECCCCC-BGGGTTTHHHHHHHHTHHHHEEEEEEEEECCHH
T ss_pred EEECCccc-chhhhhhhhHHHHHHHHHHhcCCCeEEEEEecC
Confidence 999 7765 221 233344455555543 89999998753
|
| >3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=98.89 E-value=1.3e-08 Score=91.76 Aligned_cols=109 Identities=17% Similarity=0.150 Sum_probs=71.9
Q ss_pred HHCCCCCCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCC--CCCceeechhhhHhhhhcccC
Q 015771 24 RRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK--DLPLIHSYNSIQALNKDISKS 101 (400)
Q Consensus 24 ~rlp~~~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~--~~~~~~~~~~~~~l~~~l~~~ 101 (400)
.++..-.+.+|||+|||+|..+..++...+ ..+++++|.|+.|++.+++.+.... ++..+.. +....++ .
T Consensus 34 ~~l~~~~~~~vLDiG~G~G~~~~~la~~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~-----d~~~~~~-~ 105 (204)
T 3e05_A 34 SKLRLQDDLVMWDIGAGSASVSIEASNLMP--NGRIFALERNPQYLGFIRDNLKKFVARNVTLVEA-----FAPEGLD-D 105 (204)
T ss_dssp HHTTCCTTCEEEEETCTTCHHHHHHHHHCT--TSEEEEEECCHHHHHHHHHHHHHHTCTTEEEEEC-----CTTTTCT-T
T ss_pred HHcCCCCCCEEEEECCCCCHHHHHHHHHCC--CCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeC-----Chhhhhh-c
Confidence 334333457999999999999998888764 3689999999999999998875432 2222211 1211221 2
Q ss_pred CCcccEEeecccccCCCCHHHHHHHHHHHHhccCCeEEEEcCC
Q 015771 102 EREHDLVIASYVLGEVPSLQDRITIVRQLWDLTRDVLVLVEPG 144 (400)
Q Consensus 102 ~~~~DLVias~~L~eL~~~~~r~~~i~~Lw~~~gG~LVlVE~G 144 (400)
...||+|++..++. ........+.+++ ++||.|++....
T Consensus 106 ~~~~D~i~~~~~~~---~~~~~l~~~~~~L-kpgG~l~~~~~~ 144 (204)
T 3e05_A 106 LPDPDRVFIGGSGG---MLEEIIDAVDRRL-KSEGVIVLNAVT 144 (204)
T ss_dssp SCCCSEEEESCCTT---CHHHHHHHHHHHC-CTTCEEEEEECB
T ss_pred CCCCCEEEECCCCc---CHHHHHHHHHHhc-CCCeEEEEEecc
Confidence 25799999998775 2333333333343 389999998653
|
| >1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4 | Back alignment and structure |
|---|
Probab=98.88 E-value=1.9e-08 Score=88.68 Aligned_cols=110 Identities=14% Similarity=0.196 Sum_probs=74.9
Q ss_pred HHHCCCCCCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCC--C--CCceeechhhhHhhhhc
Q 015771 23 ARRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK--D--LPLIHSYNSIQALNKDI 98 (400)
Q Consensus 23 ~~rlp~~~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~--~--~~~~~~~~~~~~l~~~l 98 (400)
...+....+.+|||+|||+|..+..++.. ..+++++|.|+.|++.++..+.... + +.++.. ++...+
T Consensus 45 ~~~~~~~~~~~vLdiG~G~G~~~~~~~~~----~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~-----d~~~~~ 115 (194)
T 1dus_A 45 VENVVVDKDDDILDLGCGYGVIGIALADE----VKSTTMADINRRAIKLAKENIKLNNLDNYDIRVVHS-----DLYENV 115 (194)
T ss_dssp HHHCCCCTTCEEEEETCTTSHHHHHHGGG----SSEEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEEC-----STTTTC
T ss_pred HHHcccCCCCeEEEeCCCCCHHHHHHHHc----CCeEEEEECCHHHHHHHHHHHHHcCCCccceEEEEC-----chhccc
Confidence 33333335579999999999998887754 4589999999999999998875432 1 222211 222211
Q ss_pred ccCCCcccEEeecccccCCCCHHHHHHHHHHHHhc--cCCeEEEEcCCC
Q 015771 99 SKSEREHDLVIASYVLGEVPSLQDRITIVRQLWDL--TRDVLVLVEPGT 145 (400)
Q Consensus 99 ~~~~~~~DLVias~~L~eL~~~~~r~~~i~~Lw~~--~gG~LVlVE~Gt 145 (400)
..++||+|++...++.- ......+++++.+. +||.++++.+..
T Consensus 116 --~~~~~D~v~~~~~~~~~--~~~~~~~l~~~~~~L~~gG~l~~~~~~~ 160 (194)
T 1dus_A 116 --KDRKYNKIITNPPIRAG--KEVLHRIIEEGKELLKDNGEIWVVIQTK 160 (194)
T ss_dssp --TTSCEEEEEECCCSTTC--HHHHHHHHHHHHHHEEEEEEEEEEEEST
T ss_pred --ccCCceEEEECCCcccc--hhHHHHHHHHHHHHcCCCCEEEEEECCC
Confidence 34689999998877642 34445566666553 799999998754
|
| >3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.88 E-value=3.9e-08 Score=87.57 Aligned_cols=118 Identities=19% Similarity=0.090 Sum_probs=76.4
Q ss_pred HHHHHHHHHHCCCCCCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCC--CCCceeechhhhH
Q 015771 16 LLVTESFARRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK--DLPLIHSYNSIQA 93 (400)
Q Consensus 16 ~~vL~el~~rlp~~~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~--~~~~~~~~~~~~~ 93 (400)
..++..+.... ...+.+|||+|||+|..+.+++.. ...+|+++|.|+.|++.|+..++... ++.++... ..+
T Consensus 31 ~~l~~~l~~~~-~~~~~~vLDlgcG~G~~~~~~~~~---~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d--~~~ 104 (189)
T 3p9n_A 31 ESLFNIVTARR-DLTGLAVLDLYAGSGALGLEALSR---GAASVLFVESDQRSAAVIARNIEALGLSGATLRRGA--VAA 104 (189)
T ss_dssp HHHHHHHHHHS-CCTTCEEEEETCTTCHHHHHHHHT---TCSEEEEEECCHHHHHHHHHHHHHHTCSCEEEEESC--HHH
T ss_pred HHHHHHHHhcc-CCCCCEEEEeCCCcCHHHHHHHHC---CCCeEEEEECCHHHHHHHHHHHHHcCCCceEEEEcc--HHH
Confidence 33445554432 245689999999999988865542 34589999999999999999875432 22222221 111
Q ss_pred hhhhcccCCCcccEEeecccccCCCCHHHHHHHHHHHHh----ccCCeEEEEcC
Q 015771 94 LNKDISKSEREHDLVIASYVLGEVPSLQDRITIVRQLWD----LTRDVLVLVEP 143 (400)
Q Consensus 94 l~~~l~~~~~~~DLVias~~L~eL~~~~~r~~~i~~Lw~----~~gG~LVlVE~ 143 (400)
+... ...++||+|++...++.. ......++..+.+ ++||.|++..+
T Consensus 105 ~~~~--~~~~~fD~i~~~~p~~~~--~~~~~~~l~~~~~~~~L~pgG~l~~~~~ 154 (189)
T 3p9n_A 105 VVAA--GTTSPVDLVLADPPYNVD--SADVDAILAALGTNGWTREGTVAVVERA 154 (189)
T ss_dssp HHHH--CCSSCCSEEEECCCTTSC--HHHHHHHHHHHHHSSSCCTTCEEEEEEE
T ss_pred HHhh--ccCCCccEEEECCCCCcc--hhhHHHHHHHHHhcCccCCCeEEEEEec
Confidence 1111 125689999998776653 2445566666665 38999988654
|
| >1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A* | Back alignment and structure |
|---|
Probab=98.88 E-value=2.3e-08 Score=98.43 Aligned_cols=118 Identities=15% Similarity=0.125 Sum_probs=83.7
Q ss_pred HHHHHHHHCCCCCCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCC--C-CCceeechhhhHh
Q 015771 18 VTESFARRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK--D-LPLIHSYNSIQAL 94 (400)
Q Consensus 18 vL~el~~rlp~~~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~--~-~~~~~~~~~~~~l 94 (400)
....+...++.-.+.+|||+|||+|..+.++.+.+|. .+++++|. +.|++.|++.+.... + +.++.. ++
T Consensus 178 ~~~~l~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~--~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~-----d~ 249 (359)
T 1x19_A 178 AIQLLLEEAKLDGVKKMIDVGGGIGDISAAMLKHFPE--LDSTILNL-PGAIDLVNENAAEKGVADRMRGIAV-----DI 249 (359)
T ss_dssp HHHHHHHHCCCTTCCEEEEESCTTCHHHHHHHHHCTT--CEEEEEEC-GGGHHHHHHHHHHTTCTTTEEEEEC-----CT
T ss_pred hHHHHHHhcCCCCCCEEEEECCcccHHHHHHHHHCCC--CeEEEEec-HHHHHHHHHHHHhcCCCCCEEEEeC-----cc
Confidence 4455555655334579999999999999999988863 58999999 999999998775432 1 222211 12
Q ss_pred hhhcccCCCcccEEeecccccCCCCHHHHHHHHHHHHhc--cCCeEEEEcCCCCC
Q 015771 95 NKDISKSEREHDLVIASYVLGEVPSLQDRITIVRQLWDL--TRDVLVLVEPGTPQ 147 (400)
Q Consensus 95 ~~~l~~~~~~~DLVias~~L~eL~~~~~r~~~i~~Lw~~--~gG~LVlVE~Gtp~ 147 (400)
.. .+ ...+|+|+++++|++++ ......+++++.+. |||.|+|+|...+.
T Consensus 250 ~~-~~--~~~~D~v~~~~vlh~~~-d~~~~~~l~~~~~~L~pgG~l~i~e~~~~~ 300 (359)
T 1x19_A 250 YK-ES--YPEADAVLFCRILYSAN-EQLSTIMCKKAFDAMRSGGRLLILDMVIDD 300 (359)
T ss_dssp TT-SC--CCCCSEEEEESCGGGSC-HHHHHHHHHHHHTTCCTTCEEEEEEECCCC
T ss_pred cc-CC--CCCCCEEEEechhccCC-HHHHHHHHHHHHHhcCCCCEEEEEecccCC
Confidence 21 12 12349999999999986 44566778887764 89999999965543
|
| >2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=98.87 E-value=8.5e-09 Score=100.01 Aligned_cols=117 Identities=15% Similarity=0.137 Sum_probs=81.9
Q ss_pred HHHHHHCCC--CCCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCC---CCCceeechhhhHh
Q 015771 20 ESFARRLPG--FSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK---DLPLIHSYNSIQAL 94 (400)
Q Consensus 20 ~el~~rlp~--~~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~---~~~~~~~~~~~~~l 94 (400)
.++...++. -.+.+|||+|||+|..+..+.+.++. .+++++|.| .|++.|+..+.... ++.++. .++
T Consensus 153 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~--~~~~~~D~~-~~~~~a~~~~~~~~~~~~v~~~~-----~d~ 224 (335)
T 2r3s_A 153 QLIAQLVNENKIEPLKVLDISASHGLFGIAVAQHNPN--AEIFGVDWA-SVLEVAKENARIQGVASRYHTIA-----GSA 224 (335)
T ss_dssp HHHHHHHTC--CCCSEEEEETCTTCHHHHHHHHHCTT--CEEEEEECH-HHHHHHHHHHHHHTCGGGEEEEE-----SCT
T ss_pred HHHHHhcccccCCCCEEEEECCCcCHHHHHHHHHCCC--CeEEEEecH-HHHHHHHHHHHhcCCCcceEEEe-----ccc
Confidence 344444443 34579999999999999999888763 589999999 99999998765321 111111 112
Q ss_pred hhhcccCCCcccEEeecccccCCCCHHHHHHHHHHHHhc--cCCeEEEEcCCCCC
Q 015771 95 NKDISKSEREHDLVIASYVLGEVPSLQDRITIVRQLWDL--TRDVLVLVEPGTPQ 147 (400)
Q Consensus 95 ~~~l~~~~~~~DLVias~~L~eL~~~~~r~~~i~~Lw~~--~gG~LVlVE~Gtp~ 147 (400)
.. .+ ....||+|++.++|++++ ..+...+++++.+. +||.|+|+|...+.
T Consensus 225 ~~-~~-~~~~~D~v~~~~~l~~~~-~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~ 276 (335)
T 2r3s_A 225 FE-VD-YGNDYDLVLLPNFLHHFD-VATCEQLLRKIKTALAVEGKVIVFDFIPNS 276 (335)
T ss_dssp TT-SC-CCSCEEEEEEESCGGGSC-HHHHHHHHHHHHHHEEEEEEEEEEECCCCT
T ss_pred cc-CC-CCCCCcEEEEcchhccCC-HHHHHHHHHHHHHhCCCCcEEEEEeecCCC
Confidence 21 12 223499999999999986 45556677777664 89999999987654
|
| >3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ... | Back alignment and structure |
|---|
Probab=98.86 E-value=5.8e-09 Score=95.51 Aligned_cols=109 Identities=15% Similarity=0.116 Sum_probs=70.3
Q ss_pred CCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCC---CCceeechhhhHhhhhcccC-----
Q 015771 30 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKD---LPLIHSYNSIQALNKDISKS----- 101 (400)
Q Consensus 30 ~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~---~~~~~~~~~~~~l~~~l~~~----- 101 (400)
.+.+|||+|||+|..+..++..++ ...+|++||.|+.|++.|++.++.... +.++.. +....++..
T Consensus 58 ~~~~vLdiG~G~G~~~~~la~~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~-----d~~~~l~~~~~~~~ 131 (221)
T 3u81_A 58 SPSLVLELGAYCGYSAVRMARLLQ-PGARLLTMEINPDCAAITQQMLNFAGLQDKVTILNG-----ASQDLIPQLKKKYD 131 (221)
T ss_dssp CCSEEEEECCTTSHHHHHHHTTSC-TTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEES-----CHHHHGGGTTTTSC
T ss_pred CCCEEEEECCCCCHHHHHHHHhCC-CCCEEEEEeCChHHHHHHHHHHHHcCCCCceEEEEC-----CHHHHHHHHHHhcC
Confidence 458999999999999988887664 246899999999999999998764321 222221 111112211
Q ss_pred CCcccEEeecccccCCCCHHHHHHHHHHHHh--ccCCeEEEEcCCCCCch
Q 015771 102 EREHDLVIASYVLGEVPSLQDRITIVRQLWD--LTRDVLVLVEPGTPQGS 149 (400)
Q Consensus 102 ~~~~DLVias~~L~eL~~~~~r~~~i~~Lw~--~~gG~LVlVE~Gtp~Gf 149 (400)
.++||+|++........ ....++..+ + ++||.||+-+.. ..|.
T Consensus 132 ~~~fD~V~~d~~~~~~~---~~~~~~~~~-~~LkpgG~lv~~~~~-~~~~ 176 (221)
T 3u81_A 132 VDTLDMVFLDHWKDRYL---PDTLLLEKC-GLLRKGTVLLADNVI-VPGT 176 (221)
T ss_dssp CCCCSEEEECSCGGGHH---HHHHHHHHT-TCCCTTCEEEESCCC-CCCC
T ss_pred CCceEEEEEcCCcccch---HHHHHHHhc-cccCCCeEEEEeCCC-Ccch
Confidence 26899999887665542 223344433 3 279988765443 4444
|
| >4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp} | Back alignment and structure |
|---|
Probab=98.86 E-value=6.7e-09 Score=93.27 Aligned_cols=89 Identities=16% Similarity=0.097 Sum_probs=46.4
Q ss_pred HHHHHHHHCCC-CCCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCC-CCCceeechhhhHhh
Q 015771 18 VTESFARRLPG-FSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK-DLPLIHSYNSIQALN 95 (400)
Q Consensus 18 vL~el~~rlp~-~~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~-~~~~~~~~~~~~~l~ 95 (400)
++..+...++. ..+.+|||+|||+|..+..++..++ ..+++++|.|+.|++.++..+.... ++.++ ..++.
T Consensus 17 ~~~~~~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~-----~~d~~ 89 (215)
T 4dzr_A 17 LVEEAIRFLKRMPSGTRVIDVGTGSGCIAVSIALACP--GVSVTAVDLSMDALAVARRNAERFGAVVDWA-----AADGI 89 (215)
T ss_dssp HHHHHHHHHTTCCTTEEEEEEESSBCHHHHHHHHHCT--TEEEEEEECC-------------------CC-----HHHHH
T ss_pred HHHHHHHHhhhcCCCCEEEEecCCHhHHHHHHHHhCC--CCeEEEEECCHHHHHHHHHHHHHhCCceEEE-----EcchH
Confidence 33444444333 3457999999999999998888764 3589999999999999998776432 12211 12232
Q ss_pred hhccc---CCCcccEEeeccc
Q 015771 96 KDISK---SEREHDLVIASYV 113 (400)
Q Consensus 96 ~~l~~---~~~~~DLVias~~ 113 (400)
..++. ..++||+|++...
T Consensus 90 ~~~~~~~~~~~~fD~i~~npp 110 (215)
T 4dzr_A 90 EWLIERAERGRPWHAIVSNPP 110 (215)
T ss_dssp HHHHHHHHTTCCBSEEEECCC
T ss_pred hhhhhhhhccCcccEEEECCC
Confidence 22211 2378999999543
|
| >2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A | Back alignment and structure |
|---|
Probab=98.86 E-value=1.3e-08 Score=91.17 Aligned_cols=101 Identities=16% Similarity=0.190 Sum_probs=71.3
Q ss_pred CeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCC-CCCceeechhhhHhhhhcccCCCcccEEee
Q 015771 32 AKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK-DLPLIHSYNSIQALNKDISKSEREHDLVIA 110 (400)
Q Consensus 32 ~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~-~~~~~~~~~~~~~l~~~l~~~~~~~DLVia 110 (400)
.+|||+|||+|..+..++.. ..+|+++|.|+.|++.++..+.... ++.++.. ++. .++...++||+|++
T Consensus 31 ~~vLdiGcG~G~~~~~l~~~----~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~-----d~~-~~~~~~~~fD~v~~ 100 (202)
T 2kw5_A 31 GKILCLAEGEGRNACFLASL----GYEVTAVDQSSVGLAKAKQLAQEKGVKITTVQS-----NLA-DFDIVADAWEGIVS 100 (202)
T ss_dssp SEEEECCCSCTHHHHHHHTT----TCEEEEECSSHHHHHHHHHHHHHHTCCEEEECC-----BTT-TBSCCTTTCSEEEE
T ss_pred CCEEEECCCCCHhHHHHHhC----CCeEEEEECCHHHHHHHHHHHHhcCCceEEEEc-----Chh-hcCCCcCCccEEEE
Confidence 39999999999998887743 3589999999999999998875321 2222211 122 12334568999999
Q ss_pred cccccCCCCHHHHHHHHHHHHhc--cCCeEEEEcCCC
Q 015771 111 SYVLGEVPSLQDRITIVRQLWDL--TRDVLVLVEPGT 145 (400)
Q Consensus 111 s~~L~eL~~~~~r~~~i~~Lw~~--~gG~LVlVE~Gt 145 (400)
++ .++ .......+++++.+. +||.|++..+..
T Consensus 101 ~~--~~~-~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 134 (202)
T 2kw5_A 101 IF--CHL-PSSLRQQLYPKVYQGLKPGGVFILEGFAP 134 (202)
T ss_dssp EC--CCC-CHHHHHHHHHHHHTTCCSSEEEEEEEECT
T ss_pred Eh--hcC-CHHHHHHHHHHHHHhcCCCcEEEEEEecc
Confidence 64 334 356677788888764 899999998754
|
| >3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* | Back alignment and structure |
|---|
Probab=98.85 E-value=4.1e-09 Score=97.97 Aligned_cols=105 Identities=11% Similarity=0.081 Sum_probs=68.6
Q ss_pred CCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCC-CCceeechhhhHhhhhcccCCCcccEE
Q 015771 30 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKD-LPLIHSYNSIQALNKDISKSEREHDLV 108 (400)
Q Consensus 30 ~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~-~~~~~~~~~~~~l~~~l~~~~~~~DLV 108 (400)
.+.+|||||||+|..+..+++.. ..++++||+|+.|++.|++....... ..++... .+++.. ....++||.|
T Consensus 60 ~G~rVLdiG~G~G~~~~~~~~~~---~~~v~~id~~~~~~~~a~~~~~~~~~~~~~~~~~--a~~~~~--~~~~~~FD~i 132 (236)
T 3orh_A 60 KGGRVLEVGFGMAIAASKVQEAP---IDEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGL--WEDVAP--TLPDGHFDGI 132 (236)
T ss_dssp TCEEEEEECCTTSHHHHHHTTSC---EEEEEEEECCHHHHHHHHHHGGGCSSEEEEEESC--HHHHGG--GSCTTCEEEE
T ss_pred CCCeEEEECCCccHHHHHHHHhC---CcEEEEEeCCHHHHHHHHHHHhhCCCceEEEeeh--HHhhcc--cccccCCceE
Confidence 45799999999999887776543 35899999999999999998865432 1112111 122221 2345678988
Q ss_pred ee-----cccccCCCCHHHHHHHHHHHHhccCCeEEEEc
Q 015771 109 IA-----SYVLGEVPSLQDRITIVRQLWDLTRDVLVLVE 142 (400)
Q Consensus 109 ia-----s~~L~eL~~~~~r~~~i~~Lw~~~gG~LVlVE 142 (400)
+. .+++.++++...-...+.++++ |||.|++.+
T Consensus 133 ~~D~~~~~~~~~~~~~~~~~~~e~~rvLk-PGG~l~f~~ 170 (236)
T 3orh_A 133 LYDTYPLSEETWHTHQFNFIKNHAFRLLK-PGGVLTYCN 170 (236)
T ss_dssp EECCCCCBGGGTTTHHHHHHHHTHHHHEE-EEEEEEECC
T ss_pred EEeeeecccchhhhcchhhhhhhhhheeC-CCCEEEEEe
Confidence 63 5566665543333444555553 899999864
|
| >3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.85 E-value=3.1e-09 Score=95.90 Aligned_cols=100 Identities=13% Similarity=0.073 Sum_probs=70.4
Q ss_pred CCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCCCC-ceeechhhhHhhhhcccCCCcccEEe
Q 015771 31 PAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLP-LIHSYNSIQALNKDISKSEREHDLVI 109 (400)
Q Consensus 31 p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~~~-~~~~~~~~~~l~~~l~~~~~~~DLVi 109 (400)
+.+|||+|||+|..++++....|. .+|+++|.|+.|+++++..+...+ .. .+.. .++... ...++||+|+
T Consensus 50 ~~~VLDlGCG~GplAl~l~~~~p~--a~~~A~Di~~~~leiar~~~~~~g-~~~~v~~----~d~~~~--~~~~~~DvVL 120 (200)
T 3fzg_A 50 VSSILDFGCGFNPLALYQWNENEK--IIYHAYDIDRAEIAFLSSIIGKLK-TTIKYRF----LNKESD--VYKGTYDVVF 120 (200)
T ss_dssp CSEEEEETCTTHHHHHHHHCSSCC--CEEEEECSCHHHHHHHHHHHHHSC-CSSEEEE----ECCHHH--HTTSEEEEEE
T ss_pred CCeEEEecCCCCHHHHHHHhcCCC--CEEEEEeCCHHHHHHHHHHHHhcC-CCccEEE----eccccc--CCCCCcChhh
Confidence 689999999999999998766653 399999999999999999986532 22 1111 112212 2457899999
Q ss_pred ecccccCCCCHHHHHHHHHHHHhc--cCCeEEEEc
Q 015771 110 ASYVLGEVPSLQDRITIVRQLWDL--TRDVLVLVE 142 (400)
Q Consensus 110 as~~L~eL~~~~~r~~~i~~Lw~~--~gG~LVlVE 142 (400)
+..+|+.|. ++...+.++.+. ++|++|-.+
T Consensus 121 a~k~LHlL~---~~~~al~~v~~~L~pggvfISfp 152 (200)
T 3fzg_A 121 LLKMLPVLK---QQDVNILDFLQLFHTQNFVISFP 152 (200)
T ss_dssp EETCHHHHH---HTTCCHHHHHHTCEEEEEEEEEE
T ss_pred HhhHHHhhh---hhHHHHHHHHHHhCCCCEEEEeC
Confidence 999999982 222333344443 788888776
|
| >2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ... | Back alignment and structure |
|---|
Probab=98.85 E-value=3.9e-09 Score=100.53 Aligned_cols=111 Identities=12% Similarity=0.122 Sum_probs=69.5
Q ss_pred CCCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCC-CCc------e---ee-----------
Q 015771 29 FSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKD-LPL------I---HS----------- 87 (400)
Q Consensus 29 ~~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~-~~~------~---~~----------- 87 (400)
..+.+|||+|||+|.....+.. . ...+|+++|+|+.|++.|++.++.... ... + ..
T Consensus 70 ~~~~~vLDiGcG~G~~~~l~~~-~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 146 (289)
T 2g72_A 70 VSGRTLIDIGSGPTVYQLLSAC-S--HFEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQ 146 (289)
T ss_dssp SCCSEEEEETCTTCCGGGTTGG-G--GCSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHH
T ss_pred CCCCeEEEECCCcChHHHHhhc-c--CCCeEEEeCCCHHHHHHHHHHHhhCcccccchhhhhHHHHhcCcccchhhhHHH
Confidence 3568999999999984322221 1 235899999999999999887653211 000 0 00
Q ss_pred ------chhhhHhhhhcc-----cCCCcccEEeecccccCCCC-HHHHHHHHHHHHhc--cCCeEEEEc
Q 015771 88 ------YNSIQALNKDIS-----KSEREHDLVIASYVLGEVPS-LQDRITIVRQLWDL--TRDVLVLVE 142 (400)
Q Consensus 88 ------~~~~~~l~~~l~-----~~~~~~DLVias~~L~eL~~-~~~r~~~i~~Lw~~--~gG~LVlVE 142 (400)
.....++...++ ...++||+|+++++|+++.. ..+...+++++.+. |||.|++++
T Consensus 147 ~~~~~~~~~~~D~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~r~LkpGG~l~~~~ 215 (289)
T 2g72_A 147 LRARVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLLIG 215 (289)
T ss_dssp HHHHEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred HHhhhceEEecccCCCCCccccccCCCCCCEEEehhhhhhhcCCHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 000001211111 12356999999999998643 33566777887764 899999984
|
| >1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3 | Back alignment and structure |
|---|
Probab=98.85 E-value=7.2e-09 Score=94.80 Aligned_cols=100 Identities=14% Similarity=0.079 Sum_probs=62.8
Q ss_pred CCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCCCCceeechhhhHhhhh---cccCCCcccE
Q 015771 31 PAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKD---ISKSEREHDL 107 (400)
Q Consensus 31 p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~~~~~~~~~~~~~l~~~---l~~~~~~~DL 107 (400)
+.+|||+|||+|..+..+++..+ ..+|+++|.|+.|++.+....+...++..+.. +.... .+ ..++||+
T Consensus 58 g~~VLDlGcGtG~~~~~la~~~~--~~~V~gvD~s~~~l~~~~~~a~~~~~v~~~~~-----d~~~~~~~~~-~~~~fD~ 129 (210)
T 1nt2_A 58 DERVLYLGAASGTTVSHLADIVD--EGIIYAVEYSAKPFEKLLELVRERNNIIPLLF-----DASKPWKYSG-IVEKVDL 129 (210)
T ss_dssp SCEEEEETCTTSHHHHHHHHHTT--TSEEEEECCCHHHHHHHHHHHHHCSSEEEECS-----CTTCGGGTTT-TCCCEEE
T ss_pred CCEEEEECCcCCHHHHHHHHHcC--CCEEEEEECCHHHHHHHHHHHhcCCCeEEEEc-----CCCCchhhcc-cccceeE
Confidence 46999999999999888887775 35899999999887654444432223222211 11110 12 2368999
Q ss_pred EeecccccCCCCHHHHHHHHHHHHh--ccCCeEEEEcC
Q 015771 108 VIASYVLGEVPSLQDRITIVRQLWD--LTRDVLVLVEP 143 (400)
Q Consensus 108 Vias~~L~eL~~~~~r~~~i~~Lw~--~~gG~LVlVE~ 143 (400)
|++.. ........+++++.+ +|||.|+++-+
T Consensus 130 V~~~~-----~~~~~~~~~l~~~~r~LkpgG~l~i~~~ 162 (210)
T 1nt2_A 130 IYQDI-----AQKNQIEILKANAEFFLKEKGEVVIMVK 162 (210)
T ss_dssp EEECC-----CSTTHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred EEEec-----cChhHHHHHHHHHHHHhCCCCEEEEEEe
Confidence 99872 122233334555554 38999999853
|
| >3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.84 E-value=2.2e-08 Score=90.35 Aligned_cols=106 Identities=18% Similarity=0.221 Sum_probs=74.0
Q ss_pred HHHHCCCCCCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCC--CCCceeechhhhHhhhhcc
Q 015771 22 FARRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK--DLPLIHSYNSIQALNKDIS 99 (400)
Q Consensus 22 l~~rlp~~~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~--~~~~~~~~~~~~~l~~~l~ 99 (400)
+...+....+.+|||+|||+|..+..++.. ..+|+++|.|+.|++.+++.+.... ++.++.. +.....
T Consensus 69 ~~~~l~~~~~~~vLdiG~G~G~~~~~la~~----~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~-----d~~~~~- 138 (210)
T 3lbf_A 69 MTELLELTPQSRVLEIGTGSGYQTAILAHL----VQHVCSVERIKGLQWQARRRLKNLDLHNVSTRHG-----DGWQGW- 138 (210)
T ss_dssp HHHHTTCCTTCEEEEECCTTSHHHHHHHHH----SSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEES-----CGGGCC-
T ss_pred HHHhcCCCCCCEEEEEcCCCCHHHHHHHHh----CCEEEEEecCHHHHHHHHHHHHHcCCCceEEEEC-----CcccCC-
Confidence 333443334579999999999998887765 3589999999999999999876432 2222221 222211
Q ss_pred cCCCcccEEeecccccCCCCHHHHHHHHHHHHhccCCeEEEEcCC
Q 015771 100 KSEREHDLVIASYVLGEVPSLQDRITIVRQLWDLTRDVLVLVEPG 144 (400)
Q Consensus 100 ~~~~~~DLVias~~L~eL~~~~~r~~~i~~Lw~~~gG~LVlVE~G 144 (400)
...++||+|++..++.++++. +.+++ ++||.||+.-+.
T Consensus 139 ~~~~~~D~i~~~~~~~~~~~~------~~~~L-~pgG~lv~~~~~ 176 (210)
T 3lbf_A 139 QARAPFDAIIVTAAPPEIPTA------LMTQL-DEGGILVLPVGE 176 (210)
T ss_dssp GGGCCEEEEEESSBCSSCCTH------HHHTE-EEEEEEEEEECS
T ss_pred ccCCCccEEEEccchhhhhHH------HHHhc-ccCcEEEEEEcC
Confidence 234689999999999999742 33344 379999998776
|
| >3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=98.84 E-value=1.5e-08 Score=89.47 Aligned_cols=102 Identities=18% Similarity=0.129 Sum_probs=73.4
Q ss_pred CCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCCCCceeechhhhHhhhhcccCCCcccEEe
Q 015771 30 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDISKSEREHDLVI 109 (400)
Q Consensus 30 ~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~~~~~~~~~~~~~l~~~l~~~~~~~DLVi 109 (400)
.+.+|||+|||+|..+..+... ..+++++|.|+.|++.++..+.+ +.++.. ++. .++...++||+|+
T Consensus 46 ~~~~vLdiG~G~G~~~~~l~~~----~~~v~~~D~~~~~~~~a~~~~~~---~~~~~~-----d~~-~~~~~~~~~D~i~ 112 (195)
T 3cgg_A 46 RGAKILDAGCGQGRIGGYLSKQ----GHDVLGTDLDPILIDYAKQDFPE---ARWVVG-----DLS-VDQISETDFDLIV 112 (195)
T ss_dssp TTCEEEEETCTTTHHHHHHHHT----TCEEEEEESCHHHHHHHHHHCTT---SEEEEC-----CTT-TSCCCCCCEEEEE
T ss_pred CCCeEEEECCCCCHHHHHHHHC----CCcEEEEcCCHHHHHHHHHhCCC---CcEEEc-----ccc-cCCCCCCceeEEE
Confidence 4579999999999998887754 35899999999999999987643 222221 122 1223356899999
Q ss_pred ec-ccccCCCCHHHHHHHHHHHHhc--cCCeEEEEcCCC
Q 015771 110 AS-YVLGEVPSLQDRITIVRQLWDL--TRDVLVLVEPGT 145 (400)
Q Consensus 110 as-~~L~eL~~~~~r~~~i~~Lw~~--~gG~LVlVE~Gt 145 (400)
+. .++++++ ......++.++.+. +||.+++..+..
T Consensus 113 ~~~~~~~~~~-~~~~~~~l~~~~~~l~~~G~l~~~~~~~ 150 (195)
T 3cgg_A 113 SAGNVMGFLA-EDGREPALANIHRALGADGRAVIGFGAG 150 (195)
T ss_dssp ECCCCGGGSC-HHHHHHHHHHHHHHEEEEEEEEEEEETT
T ss_pred ECCcHHhhcC-hHHHHHHHHHHHHHhCCCCEEEEEeCCC
Confidence 98 7888874 55566677776654 799999876543
|
| >1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A | Back alignment and structure |
|---|
Probab=98.83 E-value=1.6e-08 Score=93.23 Aligned_cols=102 Identities=11% Similarity=0.081 Sum_probs=67.4
Q ss_pred CCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCCCCceeechhhhHhhhhcccCCCcccEEe
Q 015771 30 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDISKSEREHDLVI 109 (400)
Q Consensus 30 ~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~~~~~~~~~~~~~l~~~l~~~~~~~DLVi 109 (400)
.+.+|||+|||+|..+..+++.++ ..+|++||.|+.|++.++..++...++.++.... ......++.. ..||+|+
T Consensus 74 ~~~~VLDlGcG~G~~~~~la~~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~v~~~~~d~--~~~~~~~~~~-~~~D~v~ 148 (230)
T 1fbn_A 74 RDSKILYLGASAGTTPSHVADIAD--KGIVYAIEYAPRIMRELLDACAERENIIPILGDA--NKPQEYANIV-EKVDVIY 148 (230)
T ss_dssp TTCEEEEESCCSSHHHHHHHHHTT--TSEEEEEESCHHHHHHHHHHTTTCTTEEEEECCT--TCGGGGTTTS-CCEEEEE
T ss_pred CCCEEEEEcccCCHHHHHHHHHcC--CcEEEEEECCHHHHHHHHHHhhcCCCeEEEECCC--CCcccccccC-ccEEEEE
Confidence 347999999999999998888775 3589999999999999988876543332222110 0000002222 6799999
Q ss_pred ecccccCCCCHHHHHHHHHHHHhc--cCCeEEEE
Q 015771 110 ASYVLGEVPSLQDRITIVRQLWDL--TRDVLVLV 141 (400)
Q Consensus 110 as~~L~eL~~~~~r~~~i~~Lw~~--~gG~LVlV 141 (400)
++++.......+++++.+. +||.|+++
T Consensus 149 -----~~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 177 (230)
T 1fbn_A 149 -----EDVAQPNQAEILIKNAKWFLKKGGYGMIA 177 (230)
T ss_dssp -----ECCCSTTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred -----EecCChhHHHHHHHHHHHhCCCCcEEEEE
Confidence 3344444444556665543 89999885
|
| >3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=98.83 E-value=1.7e-08 Score=88.92 Aligned_cols=98 Identities=17% Similarity=0.096 Sum_probs=65.3
Q ss_pred CCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCCCCceeechhhhHhhhhcccCCCcccEEe
Q 015771 30 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDISKSEREHDLVI 109 (400)
Q Consensus 30 ~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~~~~~~~~~~~~~l~~~l~~~~~~~DLVi 109 (400)
.+.+|||+|||+|..+..++. .. +++++|.|+.|++. ..++.++.. ++... ...++||+|+
T Consensus 23 ~~~~vLD~GcG~G~~~~~l~~----~~-~v~gvD~s~~~~~~-------~~~~~~~~~-----d~~~~--~~~~~fD~i~ 83 (170)
T 3q87_B 23 EMKIVLDLGTSTGVITEQLRK----RN-TVVSTDLNIRALES-------HRGGNLVRA-----DLLCS--INQESVDVVV 83 (170)
T ss_dssp CSCEEEEETCTTCHHHHHHTT----TS-EEEEEESCHHHHHT-------CSSSCEEEC-----STTTT--BCGGGCSEEE
T ss_pred CCCeEEEeccCccHHHHHHHh----cC-cEEEEECCHHHHhc-------ccCCeEEEC-----Chhhh--cccCCCCEEE
Confidence 457999999999999888874 33 89999999999987 123333332 12221 2336899999
Q ss_pred ecccccCCCCH------HHHHHHHHHHHhc-cCCeEEEEcCCCC
Q 015771 110 ASYVLGEVPSL------QDRITIVRQLWDL-TRDVLVLVEPGTP 146 (400)
Q Consensus 110 as~~L~eL~~~------~~r~~~i~~Lw~~-~gG~LVlVE~Gtp 146 (400)
++..++..++. .....++.++.+. +||.+++++++..
T Consensus 84 ~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~lpgG~l~~~~~~~~ 127 (170)
T 3q87_B 84 FNPPYVPDTDDPIIGGGYLGREVIDRFVDAVTVGMLYLLVIEAN 127 (170)
T ss_dssp ECCCCBTTCCCTTTBCCGGGCHHHHHHHHHCCSSEEEEEEEGGG
T ss_pred ECCCCccCCccccccCCcchHHHHHHHHhhCCCCEEEEEEecCC
Confidence 98888765432 1122333333332 8999999987543
|
| >3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A* | Back alignment and structure |
|---|
Probab=98.82 E-value=5.6e-08 Score=92.64 Aligned_cols=124 Identities=15% Similarity=0.172 Sum_probs=77.3
Q ss_pred CCeEEEEccchhH--HHHH-HHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCC--CCCceeechhhhHhhhhccc--CCC
Q 015771 31 PAKVLDFGAGTGS--AFWA-LREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK--DLPLIHSYNSIQALNKDISK--SER 103 (400)
Q Consensus 31 p~~VLDvG~G~Gt--~~~A-l~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~--~~~~~~~~~~~~~l~~~l~~--~~~ 103 (400)
..+|||+|||++| .+.. +...+| ..+|++||.|+.|+..|+.++.... +..++... +.+....+.. ...
T Consensus 79 ~~q~LDLGcG~pT~~~~~~la~~~~P--~arVv~VD~sp~mLa~Ar~~l~~~~~~~~~~v~aD--~~~~~~~l~~~~~~~ 154 (277)
T 3giw_A 79 IRQFLDIGTGIPTSPNLHEIAQSVAP--ESRVVYVDNDPIVLTLSQGLLASTPEGRTAYVEAD--MLDPASILDAPELRD 154 (277)
T ss_dssp CCEEEEESCCSCCSSCHHHHHHHHCT--TCEEEEEECCHHHHHTTHHHHCCCSSSEEEEEECC--TTCHHHHHTCHHHHT
T ss_pred CCEEEEeCCCCCcccHHHHHHHHHCC--CCEEEEEeCChHHHHHHHHHhccCCCCcEEEEEec--ccChhhhhccccccc
Confidence 4799999999743 2333 344676 3689999999999999999987532 12233322 1111100000 023
Q ss_pred ccc-----EEeecccccCCCCHHHHHHHHHHHHhc--cCCeEEEEcCCCCCchHHHHHHHHH
Q 015771 104 EHD-----LVIASYVLGEVPSLQDRITIVRQLWDL--TRDVLVLVEPGTPQGSSIISQMRSH 158 (400)
Q Consensus 104 ~~D-----LVias~~L~eL~~~~~r~~~i~~Lw~~--~gG~LVlVE~Gtp~Gf~~I~~aR~~ 158 (400)
.|| .|+++.+|+++++......+++.+.+. |||+|+|.+......-+.+..+++.
T Consensus 155 ~~D~~~p~av~~~avLH~l~d~~~p~~~l~~l~~~L~PGG~Lvls~~~~d~~p~~~~~~~~~ 216 (277)
T 3giw_A 155 TLDLTRPVALTVIAIVHFVLDEDDAVGIVRRLLEPLPSGSYLAMSIGTAEFAPQEVGRVARE 216 (277)
T ss_dssp TCCTTSCCEEEEESCGGGSCGGGCHHHHHHHHHTTSCTTCEEEEEEECCTTSHHHHHHHHHH
T ss_pred ccCcCCcchHHhhhhHhcCCchhhHHHHHHHHHHhCCCCcEEEEEeccCCCCHHHHHHHHHH
Confidence 344 588899999998654346778888764 8999999876544222334444444
|
| >1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A* | Back alignment and structure |
|---|
Probab=98.82 E-value=1.5e-08 Score=99.85 Aligned_cols=115 Identities=20% Similarity=0.198 Sum_probs=78.2
Q ss_pred HHHHHCCCCCCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCC---CCCceeechhhhHhhhh
Q 015771 21 SFARRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK---DLPLIHSYNSIQALNKD 97 (400)
Q Consensus 21 el~~rlp~~~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~---~~~~~~~~~~~~~l~~~ 97 (400)
.+...++.-.+.+|||+|||+|..+..+.+.++ ..+++++|. +.|++.|+..+.... ++.++.. ++...
T Consensus 173 ~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~~--~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~-----d~~~~ 244 (374)
T 1qzz_A 173 APADAYDWSAVRHVLDVGGGNGGMLAAIALRAP--HLRGTLVEL-AGPAERARRRFADAGLADRVTVAEG-----DFFKP 244 (374)
T ss_dssp HHHHTSCCTTCCEEEEETCTTSHHHHHHHHHCT--TCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEEC-----CTTSC
T ss_pred HHHHhCCCCCCCEEEEECCCcCHHHHHHHHHCC--CCEEEEEeC-HHHHHHHHHHHHhcCCCCceEEEeC-----CCCCc
Confidence 334444322457999999999999999988876 358999999 999999998775432 1222211 22222
Q ss_pred cccCCCcccEEeecccccCCCCHHHHHHHHHHHHhc--cCCeEEEEcC--CCCC
Q 015771 98 ISKSEREHDLVIASYVLGEVPSLQDRITIVRQLWDL--TRDVLVLVEP--GTPQ 147 (400)
Q Consensus 98 l~~~~~~~DLVias~~L~eL~~~~~r~~~i~~Lw~~--~gG~LVlVE~--Gtp~ 147 (400)
++ ..||+|++.++|++++ ......+++++.+. +||.|+|+|. ..+.
T Consensus 245 ~~---~~~D~v~~~~vl~~~~-~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~ 294 (374)
T 1qzz_A 245 LP---VTADVVLLSFVLLNWS-DEDALTILRGCVRALEPGGRLLVLDRADVEGD 294 (374)
T ss_dssp CS---CCEEEEEEESCGGGSC-HHHHHHHHHHHHHHEEEEEEEEEEECCH----
T ss_pred CC---CCCCEEEEeccccCCC-HHHHHHHHHHHHHhcCCCcEEEEEechhhcCC
Confidence 22 2499999999999986 44445667766653 8999999998 5443
|
| >1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A* | Back alignment and structure |
|---|
Probab=98.82 E-value=1.6e-08 Score=88.90 Aligned_cols=102 Identities=15% Similarity=0.169 Sum_probs=69.1
Q ss_pred CCCCCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCC---CCCceeechhhhHhhhhcccCCC
Q 015771 27 PGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK---DLPLIHSYNSIQALNKDISKSER 103 (400)
Q Consensus 27 p~~~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~---~~~~~~~~~~~~~l~~~l~~~~~ 103 (400)
....+.+|||+|||+|..+..++... .+|+++|.|+.|++.++..+.... ++.++.. ++...++ ...
T Consensus 30 ~~~~~~~vldiG~G~G~~~~~l~~~~----~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~-----d~~~~~~-~~~ 99 (192)
T 1l3i_A 30 EPGKNDVAVDVGCGTGGVTLELAGRV----RRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEG-----DAPEALC-KIP 99 (192)
T ss_dssp CCCTTCEEEEESCTTSHHHHHHHTTS----SEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEES-----CHHHHHT-TSC
T ss_pred CCCCCCEEEEECCCCCHHHHHHHHhc----CEEEEEECCHHHHHHHHHHHHHcCCCcceEEEec-----CHHHhcc-cCC
Confidence 33455799999999999988877543 689999999999999998775432 2222221 1222222 124
Q ss_pred cccEEeecccccCCCCHHHHHHHHHHHHhc--cCCeEEEEcCC
Q 015771 104 EHDLVIASYVLGEVPSLQDRITIVRQLWDL--TRDVLVLVEPG 144 (400)
Q Consensus 104 ~~DLVias~~L~eL~~~~~r~~~i~~Lw~~--~gG~LVlVE~G 144 (400)
.||+|++..++.++ ..+++++.+. +||.++++.+.
T Consensus 100 ~~D~v~~~~~~~~~------~~~l~~~~~~l~~gG~l~~~~~~ 136 (192)
T 1l3i_A 100 DIDIAVVGGSGGEL------QEILRIIKDKLKPGGRIIVTAIL 136 (192)
T ss_dssp CEEEEEESCCTTCH------HHHHHHHHHTEEEEEEEEEEECB
T ss_pred CCCEEEECCchHHH------HHHHHHHHHhcCCCcEEEEEecC
Confidence 79999998876543 3445555543 79999998764
|
| >2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=98.81 E-value=1.7e-08 Score=88.64 Aligned_cols=117 Identities=16% Similarity=0.100 Sum_probs=71.1
Q ss_pred HHHHHHHCC-CCCCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCCCCceeechhhhHhhhh
Q 015771 19 TESFARRLP-GFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKD 97 (400)
Q Consensus 19 L~el~~rlp-~~~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~~~~~~~~~~~~~l~~~ 97 (400)
...+...+. ...+.+|||+|||+|..+..++.. + ..+++++|.|+.|++.|+..++.......+... ..+....
T Consensus 19 ~~~~~~~l~~~~~~~~vLDlGcG~G~~~~~l~~~-~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~--~~d~~~~ 93 (177)
T 2esr_A 19 RGAIFNMIGPYFNGGRVLDLFAGSGGLAIEAVSR-G--MSAAVLVEKNRKAQAIIQDNIIMTKAENRFTLL--KMEAERA 93 (177)
T ss_dssp HHHHHHHHCSCCCSCEEEEETCTTCHHHHHHHHT-T--CCEEEEECCCHHHHHHHHHHHHTTTCGGGEEEE--CSCHHHH
T ss_pred HHHHHHHHHhhcCCCeEEEeCCCCCHHHHHHHHc-C--CCEEEEEECCHHHHHHHHHHHHHcCCCCceEEE--ECcHHHh
Confidence 334443333 345679999999999998877754 2 358999999999999999988654211111110 1112211
Q ss_pred cccCCCcccEEeecccccCCCCHHHHHHHHHHHH--h--ccCCeEEEEcCC
Q 015771 98 ISKSEREHDLVIASYVLGEVPSLQDRITIVRQLW--D--LTRDVLVLVEPG 144 (400)
Q Consensus 98 l~~~~~~~DLVias~~L~eL~~~~~r~~~i~~Lw--~--~~gG~LVlVE~G 144 (400)
++...+.||+|++...+.. ......+..+. + ++||.+++..+.
T Consensus 94 ~~~~~~~fD~i~~~~~~~~----~~~~~~~~~l~~~~~L~~gG~l~~~~~~ 140 (177)
T 2esr_A 94 IDCLTGRFDLVFLDPPYAK----ETIVATIEALAAKNLLSEQVMVVCETDK 140 (177)
T ss_dssp HHHBCSCEEEEEECCSSHH----HHHHHHHHHHHHTTCEEEEEEEEEEEET
T ss_pred HHhhcCCCCEEEECCCCCc----chHHHHHHHHHhCCCcCCCcEEEEEECC
Confidence 2222357999998755421 22334444444 3 279998887654
|
| >1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A | Back alignment and structure |
|---|
Probab=98.81 E-value=1.7e-08 Score=94.11 Aligned_cols=59 Identities=19% Similarity=0.193 Sum_probs=44.9
Q ss_pred HHHHHHHHCCCCCCCeEEEEccchhHHHHHHHHH--CCCCCcEEEEEeCCHHHHHHHHHhhcC
Q 015771 18 VTESFARRLPGFSPAKVLDFGAGTGSAFWALREV--WPRSLEKVNLVEPSQSMQRAGQSLMQG 78 (400)
Q Consensus 18 vL~el~~rlp~~~p~~VLDvG~G~Gt~~~Al~~~--~~~~~~~v~~vD~S~~ml~~a~~ll~~ 78 (400)
++..+...++...+.+|||+|||+|..+..++.. ++ ..+|+++|.|+.|++.|+..+..
T Consensus 39 l~~~~l~~~~~~~~~~vLD~gcGsG~~~~~la~~~~~~--~~~v~gvDis~~~l~~A~~~~~~ 99 (250)
T 1o9g_A 39 IFQRALARLPGDGPVTLWDPCCGSGYLLTVLGLLHRRS--LRQVIASDVDPAPLELAAKNLAL 99 (250)
T ss_dssp HHHHHHHTSSCCSCEEEEETTCTTSHHHHHHHHHTGGG--EEEEEEEESCHHHHHHHHHHHHT
T ss_pred HHHHHHHhcccCCCCeEEECCCCCCHHHHHHHHHhccC--CCeEEEEECCHHHHHHHHHHHHH
Confidence 4444444444335679999999999998888876 43 35899999999999999977654
|
| >3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=98.81 E-value=2.9e-08 Score=91.46 Aligned_cols=116 Identities=14% Similarity=0.168 Sum_probs=71.3
Q ss_pred HHHHHHHHHCCCCCCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCCC-CceeechhhhHhh
Q 015771 17 LVTESFARRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDL-PLIHSYNSIQALN 95 (400)
Q Consensus 17 ~vL~el~~rlp~~~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~~-~~~~~~~~~~~l~ 95 (400)
+.|..+....+.-+..+|||+|||+|..+..++..++ ...+|++||.|+.|++.|++.++..... ..+... ..+..
T Consensus 43 ~~l~~l~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~-~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~~i~~~--~gda~ 119 (221)
T 3dr5_A 43 QLLTTLAATTNGNGSTGAIAITPAAGLVGLYILNGLA-DNTTLTCIDPESEHQRQAKALFREAGYSPSRVRFL--LSRPL 119 (221)
T ss_dssp HHHHHHHHHSCCTTCCEEEEESTTHHHHHHHHHHHSC-TTSEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEE--CSCHH
T ss_pred HHHHHHHHhhCCCCCCCEEEEcCCchHHHHHHHHhCC-CCCEEEEEECCHHHHHHHHHHHHHcCCCcCcEEEE--EcCHH
Confidence 3445554443221123999999999999988888775 3468999999999999999988653211 122110 11112
Q ss_pred hhccc-CCCcccEEeecccccCCCCHHHHHHHHHHHHhc--cCCeEEEE
Q 015771 96 KDISK-SEREHDLVIASYVLGEVPSLQDRITIVRQLWDL--TRDVLVLV 141 (400)
Q Consensus 96 ~~l~~-~~~~~DLVias~~L~eL~~~~~r~~~i~~Lw~~--~gG~LVlV 141 (400)
..++. ..++||+|++..... . ...+++.+++. +||.||+-
T Consensus 120 ~~l~~~~~~~fD~V~~d~~~~---~---~~~~l~~~~~~LkpGG~lv~d 162 (221)
T 3dr5_A 120 DVMSRLANDSYQLVFGQVSPM---D---LKALVDAAWPLLRRGGALVLA 162 (221)
T ss_dssp HHGGGSCTTCEEEEEECCCTT---T---HHHHHHHHHHHEEEEEEEEET
T ss_pred HHHHHhcCCCcCeEEEcCcHH---H---HHHHHHHHHHHcCCCcEEEEe
Confidence 22222 257899998865322 2 22344444443 78988863
|
| >3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A* | Back alignment and structure |
|---|
Probab=98.81 E-value=3.9e-08 Score=98.58 Aligned_cols=120 Identities=8% Similarity=0.049 Sum_probs=77.2
Q ss_pred HHHHHHHCCCCCCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcC---------C--CCCCceee
Q 015771 19 TESFARRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQG---------P--KDLPLIHS 87 (400)
Q Consensus 19 L~el~~rlp~~~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~---------~--~~~~~~~~ 87 (400)
+.++...+.--...+|||+|||+|..++.++...+ ..++++||.|+.|+++|+..++. . .++.++..
T Consensus 162 i~~il~~l~l~~gd~VLDLGCGtG~l~l~lA~~~g--~~kVvGIDiS~~~lelAr~n~e~frkr~~~~Gl~~~rVefi~G 239 (438)
T 3uwp_A 162 VAQMIDEIKMTDDDLFVDLGSGVGQVVLQVAAATN--CKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERG 239 (438)
T ss_dssp HHHHHHHHCCCTTCEEEEESCTTSHHHHHHHHHCC--CSEEEEEECCHHHHHHHHHHHHHHHHHHHHHTBCCCEEEEEEC
T ss_pred HHHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHHCC--CCEEEEEeCCHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEEEC
Confidence 33343333333447999999999999998876654 34799999999999999875421 1 12222322
Q ss_pred chhhhHhhhhcccC--CCcccEEeecccccCCCCHHHHHHHHHHHHhc--cCCeEEEEcCCCCCchH
Q 015771 88 YNSIQALNKDISKS--EREHDLVIASYVLGEVPSLQDRITIVRQLWDL--TRDVLVLVEPGTPQGSS 150 (400)
Q Consensus 88 ~~~~~~l~~~l~~~--~~~~DLVias~~L~eL~~~~~r~~~i~~Lw~~--~gG~LVlVE~Gtp~Gf~ 150 (400)
. +.. ++.. ...+|+|++++.+.. . +....+.++++. |||.||+.|+-.|.++.
T Consensus 240 D-----~~~-lp~~d~~~~aDVVf~Nn~~F~---p-dl~~aL~Ei~RvLKPGGrIVssE~f~p~d~~ 296 (438)
T 3uwp_A 240 D-----FLS-EEWRERIANTSVIFVNNFAFG---P-EVDHQLKERFANMKEGGRIVSSKPFAPLNFR 296 (438)
T ss_dssp C-----TTS-HHHHHHHHTCSEEEECCTTCC---H-HHHHHHHHHHTTSCTTCEEEESSCSSCTTCC
T ss_pred c-----ccC-CccccccCCccEEEEcccccC---c-hHHHHHHHHHHcCCCCcEEEEeecccCCCCC
Confidence 1 111 1111 136999998877632 2 334445555553 89999999998888873
|
| >3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp} | Back alignment and structure |
|---|
Probab=98.80 E-value=1.1e-08 Score=92.17 Aligned_cols=115 Identities=18% Similarity=0.196 Sum_probs=76.1
Q ss_pred HHHHHHHHHHHHHHCCCCCCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCC--CCCceeech
Q 015771 12 LLFTLLVTESFARRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK--DLPLIHSYN 89 (400)
Q Consensus 12 Ya~~~~vL~el~~rlp~~~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~--~~~~~~~~~ 89 (400)
+.....++..+...+. .+.+|||+|||+|..+..++. .+ ..+++++|.|+.|++.|+..+.... ++.++..
T Consensus 44 ~~~~~~~~~~l~~~~~--~~~~vLDiG~G~G~~~~~l~~-~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~-- 116 (205)
T 3grz_A 44 HQTTQLAMLGIERAMV--KPLTVADVGTGSGILAIAAHK-LG--AKSVLATDISDESMTAAEENAALNGIYDIALQKT-- 116 (205)
T ss_dssp HHHHHHHHHHHHHHCS--SCCEEEEETCTTSHHHHHHHH-TT--CSEEEEEESCHHHHHHHHHHHHHTTCCCCEEEES--
T ss_pred CccHHHHHHHHHHhcc--CCCEEEEECCCCCHHHHHHHH-CC--CCEEEEEECCHHHHHHHHHHHHHcCCCceEEEec--
Confidence 3444556666665443 347999999999998888765 32 3589999999999999999876432 2222221
Q ss_pred hhhHhhhhcccCCCcccEEeecccccCCCCHHHHHHHHHHHHhc--cCCeEEEEcCCC
Q 015771 90 SIQALNKDISKSEREHDLVIASYVLGEVPSLQDRITIVRQLWDL--TRDVLVLVEPGT 145 (400)
Q Consensus 90 ~~~~l~~~l~~~~~~~DLVias~~L~eL~~~~~r~~~i~~Lw~~--~gG~LVlVE~Gt 145 (400)
++. ....++||+|++..+++.+ ..+++++.+. +||.|++.+...
T Consensus 117 ---d~~---~~~~~~fD~i~~~~~~~~~------~~~l~~~~~~L~~gG~l~~~~~~~ 162 (205)
T 3grz_A 117 ---SLL---ADVDGKFDLIVANILAEIL------LDLIPQLDSHLNEDGQVIFSGIDY 162 (205)
T ss_dssp ---STT---TTCCSCEEEEEEESCHHHH------HHHGGGSGGGEEEEEEEEEEEEEG
T ss_pred ---ccc---ccCCCCceEEEECCcHHHH------HHHHHHHHHhcCCCCEEEEEecCc
Confidence 121 1234789999998766432 3445555443 799999976543
|
| >1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33 | Back alignment and structure |
|---|
Probab=98.80 E-value=2.3e-08 Score=93.89 Aligned_cols=116 Identities=16% Similarity=0.153 Sum_probs=75.4
Q ss_pred HHHHHHHHHH-HHHHCCCCCCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCCCCceeechh
Q 015771 12 LLFTLLVTES-FARRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNS 90 (400)
Q Consensus 12 Ya~~~~vL~e-l~~rlp~~~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~~~~~~~~~~ 90 (400)
|..+...+.+ +...++ ..+.+|||+|||+|..+..+++.++ ..+|+++|+|+.|++.|++...+ +.++..
T Consensus 67 ~~~~~~~~~~~~~~~~~-~~~~~vLdiG~G~G~~~~~l~~~~~--~~~v~~vD~s~~~~~~a~~~~~~---~~~~~~--- 137 (269)
T 1p91_A 67 YQPLRDAIVAQLRERLD-DKATAVLDIGCGEGYYTHAFADALP--EITTFGLDVSKVAIKAAAKRYPQ---VTFCVA--- 137 (269)
T ss_dssp THHHHHHHHHHHHHHSC-TTCCEEEEETCTTSTTHHHHHHTCT--TSEEEEEESCHHHHHHHHHHCTT---SEEEEC---
T ss_pred cHHHHHHHHHHHHHhcC-CCCCEEEEECCCCCHHHHHHHHhCC--CCeEEEEeCCHHHHHHHHHhCCC---cEEEEc---
Confidence 3344443333 333332 2457999999999999888887664 35899999999999999887532 222221
Q ss_pred hhHhhhhcccCCCcccEEeecccccCCCCHHHHHHHHHHHHhccCCeEEEEcCCCCC
Q 015771 91 IQALNKDISKSEREHDLVIASYVLGEVPSLQDRITIVRQLWDLTRDVLVLVEPGTPQ 147 (400)
Q Consensus 91 ~~~l~~~l~~~~~~~DLVias~~L~eL~~~~~r~~~i~~Lw~~~gG~LVlVE~Gtp~ 147 (400)
+.. .++...++||+|++.++... ...+.+++ ++||.|+++.++...
T Consensus 138 --d~~-~~~~~~~~fD~v~~~~~~~~-------l~~~~~~L-~pgG~l~~~~~~~~~ 183 (269)
T 1p91_A 138 --SSH-RLPFSDTSMDAIIRIYAPCK-------AEELARVV-KPGGWVITATPGPRH 183 (269)
T ss_dssp --CTT-SCSBCTTCEEEEEEESCCCC-------HHHHHHHE-EEEEEEEEEEECTTT
T ss_pred --chh-hCCCCCCceeEEEEeCChhh-------HHHHHHhc-CCCcEEEEEEcCHHH
Confidence 111 23334568999998776332 22334444 379999999987644
|
| >2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=98.80 E-value=3.6e-08 Score=89.29 Aligned_cols=109 Identities=13% Similarity=0.061 Sum_probs=73.7
Q ss_pred HHHHCCCCCCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCC--CCCCceeechhhhHhhhhcc
Q 015771 22 FARRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGP--KDLPLIHSYNSIQALNKDIS 99 (400)
Q Consensus 22 l~~rlp~~~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~--~~~~~~~~~~~~~~l~~~l~ 99 (400)
+.+.+....+.+|||+|||+|..+..++...+ ...+|+++|.|+.|++.++..+... .++.+... +....++
T Consensus 69 ~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~-----d~~~~~~ 142 (215)
T 2yxe_A 69 MCELLDLKPGMKVLEIGTGCGYHAAVTAEIVG-EDGLVVSIERIPELAEKAERTLRKLGYDNVIVIVG-----DGTLGYE 142 (215)
T ss_dssp HHHHTTCCTTCEEEEECCTTSHHHHHHHHHHC-TTSEEEEEESCHHHHHHHHHHHHHHTCTTEEEEES-----CGGGCCG
T ss_pred HHHhhCCCCCCEEEEECCCccHHHHHHHHHhC-CCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEEC-----CcccCCC
Confidence 33333333457999999999999988887763 2258999999999999999887532 12222211 1221121
Q ss_pred cCCCcccEEeecccccCCCCHHHHHHHHHHHHhccCCeEEEEcCC
Q 015771 100 KSEREHDLVIASYVLGEVPSLQDRITIVRQLWDLTRDVLVLVEPG 144 (400)
Q Consensus 100 ~~~~~~DLVias~~L~eL~~~~~r~~~i~~Lw~~~gG~LVlVE~G 144 (400)
..++||+|++..++++++. .+.+++ ++||.|+++.+.
T Consensus 143 -~~~~fD~v~~~~~~~~~~~------~~~~~L-~pgG~lv~~~~~ 179 (215)
T 2yxe_A 143 -PLAPYDRIYTTAAGPKIPE------PLIRQL-KDGGKLLMPVGR 179 (215)
T ss_dssp -GGCCEEEEEESSBBSSCCH------HHHHTE-EEEEEEEEEESS
T ss_pred -CCCCeeEEEECCchHHHHH------HHHHHc-CCCcEEEEEECC
Confidence 2467999999999999862 233343 379999988764
|
| >3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.80 E-value=1.7e-08 Score=108.48 Aligned_cols=109 Identities=16% Similarity=0.203 Sum_probs=73.9
Q ss_pred CCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCC-----CCCCceeechhhhHhhhhcccCCCc
Q 015771 30 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGP-----KDLPLIHSYNSIQALNKDISKSERE 104 (400)
Q Consensus 30 ~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~-----~~~~~~~~~~~~~~l~~~l~~~~~~ 104 (400)
.+.+|||+|||+|..+..++...+ ...+|++||+|+.|++.|++.+... ...+.+.. ...++. .++...+.
T Consensus 721 ~g~rVLDVGCGTG~lai~LAr~g~-p~a~VtGVDIS~emLe~AReRLa~~lnAkr~gl~nVef--iqGDa~-dLp~~d~s 796 (950)
T 3htx_A 721 SASTLVDFGCGSGSLLDSLLDYPT-SLQTIIGVDISPKGLARAAKMLHVKLNKEACNVKSATL--YDGSIL-EFDSRLHD 796 (950)
T ss_dssp CCSEEEEETCSSSHHHHHHTSSCC-CCCEEEEEESCHHHHHHHHHHHHHHTTTTCSSCSEEEE--EESCTT-SCCTTSCS
T ss_pred CCCEEEEECCCCCHHHHHHHHhCC-CCCeEEEEECCHHHHHHHHHHhhhccchhhcCCCceEE--EECchH-hCCcccCC
Confidence 457999999999999988886542 2368999999999999998855311 11222211 012222 23444578
Q ss_pred ccEEeecccccCCCCHHHHHHHHHHHHhc--cCCeEEEEcCC
Q 015771 105 HDLVIASYVLGEVPSLQDRITIVRQLWDL--TRDVLVLVEPG 144 (400)
Q Consensus 105 ~DLVias~~L~eL~~~~~r~~~i~~Lw~~--~gG~LVlVE~G 144 (400)
||+|++..+|++++ ......+++++.+. || .|||..|.
T Consensus 797 FDlVV~~eVLeHL~-dp~l~~~L~eI~RvLKPG-~LIISTPN 836 (950)
T 3htx_A 797 VDIGTCLEVIEHME-EDQACEFGEKVLSLFHPK-LLIVSTPN 836 (950)
T ss_dssp CCEEEEESCGGGSC-HHHHHHHHHHHHHTTCCS-EEEEEECB
T ss_pred eeEEEEeCchhhCC-hHHHHHHHHHHHHHcCCC-EEEEEecC
Confidence 99999999999997 44455566666654 66 66666553
|
| >3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus} | Back alignment and structure |
|---|
Probab=98.78 E-value=5.5e-08 Score=88.29 Aligned_cols=108 Identities=12% Similarity=0.063 Sum_probs=70.6
Q ss_pred CCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCC---CCCceeechhhhHhhhhcccCCCccc
Q 015771 30 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK---DLPLIHSYNSIQALNKDISKSEREHD 106 (400)
Q Consensus 30 ~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~---~~~~~~~~~~~~~l~~~l~~~~~~~D 106 (400)
.+.+|||+|||+|..+..++.. ..+|+++|.|+.|++.|++.++... ++.++.. +....++ ....||
T Consensus 55 ~~~~vLDlGcG~G~~~~~la~~----~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~-----d~~~~~~-~~~~~D 124 (204)
T 3njr_A 55 RGELLWDIGGGSGSVSVEWCLA----GGRAITIEPRADRIENIQKNIDTYGLSPRMRAVQG-----TAPAALA-DLPLPE 124 (204)
T ss_dssp TTCEEEEETCTTCHHHHHHHHT----TCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEES-----CTTGGGT-TSCCCS
T ss_pred CCCEEEEecCCCCHHHHHHHHc----CCEEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEeC-----chhhhcc-cCCCCC
Confidence 4579999999999998887754 4689999999999999998875432 2222221 1222122 234799
Q ss_pred EEeecccccCCCCHHHHHHHHHHHHh--ccCCeEEEEcCCCCCchHHHHHHHHHH
Q 015771 107 LVIASYVLGEVPSLQDRITIVRQLWD--LTRDVLVLVEPGTPQGSSIISQMRSHI 159 (400)
Q Consensus 107 LVias~~L~eL~~~~~r~~~i~~Lw~--~~gG~LVlVE~Gtp~Gf~~I~~aR~~l 159 (400)
+|++...+ +.. ++.++++ ++||.|++.... .+.+...++.+
T Consensus 125 ~v~~~~~~----~~~----~l~~~~~~LkpgG~lv~~~~~----~~~~~~~~~~l 167 (204)
T 3njr_A 125 AVFIGGGG----SQA----LYDRLWEWLAPGTRIVANAVT----LESETLLTQLH 167 (204)
T ss_dssp EEEECSCC----CHH----HHHHHHHHSCTTCEEEEEECS----HHHHHHHHHHH
T ss_pred EEEECCcc----cHH----HHHHHHHhcCCCcEEEEEecC----cccHHHHHHHH
Confidence 99988754 222 4455544 389999987653 23444555554
|
| >2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=98.77 E-value=2.9e-08 Score=96.50 Aligned_cols=115 Identities=13% Similarity=0.268 Sum_probs=81.1
Q ss_pred HHHHHHHCCCCCCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCC---CCCCceeechhhhHhh
Q 015771 19 TESFARRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGP---KDLPLIHSYNSIQALN 95 (400)
Q Consensus 19 L~el~~rlp~~~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~---~~~~~~~~~~~~~~l~ 95 (400)
...+...++ |.+.+|||+|||+|..+..+.+.+|. .+++++|. +.|++.|+..+... .++.++.. ++.
T Consensus 157 ~~~~~~~~~-~~~~~vlDvG~G~G~~~~~l~~~~p~--~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~-----d~~ 227 (334)
T 2ip2_A 157 FHEIPRLLD-FRGRSFVDVGGGSGELTKAILQAEPS--ARGVMLDR-EGSLGVARDNLSSLLAGERVSLVGG-----DML 227 (334)
T ss_dssp HHHHHHHSC-CTTCEEEEETCTTCHHHHHHHHHCTT--CEEEEEEC-TTCTHHHHHHTHHHHHTTSEEEEES-----CTT
T ss_pred HHHHHHhCC-CCCCEEEEeCCCchHHHHHHHHHCCC--CEEEEeCc-HHHHHHHHHHHhhcCCCCcEEEecC-----CCC
Confidence 344555543 44489999999999999999888863 48999999 99999998876431 11222221 222
Q ss_pred hhcccCCCcccEEeecccccCCCCHHHHHHHHHHHHhc--cCCeEEEEcCCCC
Q 015771 96 KDISKSEREHDLVIASYVLGEVPSLQDRITIVRQLWDL--TRDVLVLVEPGTP 146 (400)
Q Consensus 96 ~~l~~~~~~~DLVias~~L~eL~~~~~r~~~i~~Lw~~--~gG~LVlVE~Gtp 146 (400)
..+ ...||+|++.++|++++ ......+++++.+. |||.|+|+|...+
T Consensus 228 ~~~---~~~~D~v~~~~vl~~~~-~~~~~~~l~~~~~~L~pgG~l~i~e~~~~ 276 (334)
T 2ip2_A 228 QEV---PSNGDIYLLSRIIGDLD-EAASLRLLGNCREAMAGDGRVVVIERTIS 276 (334)
T ss_dssp TCC---CSSCSEEEEESCGGGCC-HHHHHHHHHHHHHHSCTTCEEEEEECCBC
T ss_pred CCC---CCCCCEEEEchhccCCC-HHHHHHHHHHHHHhcCCCCEEEEEEeccC
Confidence 212 25799999999999886 44555667776653 8999999987644
|
| >4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=98.77 E-value=1.2e-08 Score=95.02 Aligned_cols=103 Identities=11% Similarity=0.085 Sum_probs=70.8
Q ss_pred CCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCCCCceeechhhhHhhhhcccCCCcccEEee
Q 015771 31 PAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDISKSEREHDLVIA 110 (400)
Q Consensus 31 p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~~~~~~~~~~~~~l~~~l~~~~~~~DLVia 110 (400)
+.+|||+|||+|+.+..+++..+ ...+|++||.|+.|++.++..++...|+..+... .... ...+.....+|+|++
T Consensus 78 G~~VldlG~G~G~~~~~la~~VG-~~G~V~avD~s~~~~~~l~~~a~~~~ni~~V~~d--~~~p-~~~~~~~~~vDvVf~ 153 (233)
T 4df3_A 78 GDRILYLGIASGTTASHMSDIIG-PRGRIYGVEFAPRVMRDLLTVVRDRRNIFPILGD--ARFP-EKYRHLVEGVDGLYA 153 (233)
T ss_dssp TCEEEEETCTTSHHHHHHHHHHC-TTCEEEEEECCHHHHHHHHHHSTTCTTEEEEESC--TTCG-GGGTTTCCCEEEEEE
T ss_pred CCEEEEecCcCCHHHHHHHHHhC-CCceEEEEeCCHHHHHHHHHhhHhhcCeeEEEEe--ccCc-cccccccceEEEEEE
Confidence 37999999999999999998776 3568999999999999999888766555433221 1111 112334567998876
Q ss_pred cccccCCCCHHHHHHHHHHHHh--ccCCeEEEEc
Q 015771 111 SYVLGEVPSLQDRITIVRQLWD--LTRDVLVLVE 142 (400)
Q Consensus 111 s~~L~eL~~~~~r~~~i~~Lw~--~~gG~LVlVE 142 (400)
.... ..+...++.++.+ +|||.++|+.
T Consensus 154 d~~~-----~~~~~~~l~~~~r~LKpGG~lvI~i 182 (233)
T 4df3_A 154 DVAQ-----PEQAAIVVRNARFFLRDGGYMLMAI 182 (233)
T ss_dssp CCCC-----TTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred eccC-----ChhHHHHHHHHHHhccCCCEEEEEE
Confidence 4332 2344456666544 3899999864
|
| >3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A* | Back alignment and structure |
|---|
Probab=98.76 E-value=5.9e-08 Score=93.46 Aligned_cols=96 Identities=15% Similarity=0.170 Sum_probs=63.0
Q ss_pred CCCeEEEEccchhHHH-HHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCC--CCCceeechhhhHhhhhcccCCCccc
Q 015771 30 SPAKVLDFGAGTGSAF-WALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK--DLPLIHSYNSIQALNKDISKSEREHD 106 (400)
Q Consensus 30 ~p~~VLDvG~G~Gt~~-~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~--~~~~~~~~~~~~~l~~~l~~~~~~~D 106 (400)
.+.+|||+|||+|..+ +.++. ++ ..+|++||.|++|++.|+++++... ++.++.. +.. .++ .++||
T Consensus 122 ~g~rVLDIGcG~G~~ta~~lA~-~~--ga~V~gIDis~~~l~~Ar~~~~~~gl~~v~~v~g-----Da~-~l~--d~~FD 190 (298)
T 3fpf_A 122 RGERAVFIGGGPLPLTGILLSH-VY--GMRVNVVEIEPDIAELSRKVIEGLGVDGVNVITG-----DET-VID--GLEFD 190 (298)
T ss_dssp TTCEEEEECCCSSCHHHHHHHH-TT--CCEEEEEESSHHHHHHHHHHHHHHTCCSEEEEES-----CGG-GGG--GCCCS
T ss_pred CcCEEEEECCCccHHHHHHHHH-cc--CCEEEEEECCHHHHHHHHHHHHhcCCCCeEEEEC-----chh-hCC--CCCcC
Confidence 4589999999998543 33333 22 3689999999999999999876432 2222222 121 122 46899
Q ss_pred EEeecccccCCCCHHHHHHHHHHHHh--ccCCeEEEEc
Q 015771 107 LVIASYVLGEVPSLQDRITIVRQLWD--LTRDVLVLVE 142 (400)
Q Consensus 107 LVias~~L~eL~~~~~r~~~i~~Lw~--~~gG~LVlVE 142 (400)
+|+++.. .++. ..+++++.+ +|||.||+.+
T Consensus 191 vV~~~a~---~~d~---~~~l~el~r~LkPGG~Lvv~~ 222 (298)
T 3fpf_A 191 VLMVAAL---AEPK---RRVFRNIHRYVDTETRIIYRT 222 (298)
T ss_dssp EEEECTT---CSCH---HHHHHHHHHHCCTTCEEEEEE
T ss_pred EEEECCC---ccCH---HHHHHHHHHHcCCCcEEEEEc
Confidence 9998654 3433 344555554 3899999876
|
| >3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae} | Back alignment and structure |
|---|
Probab=98.76 E-value=3e-08 Score=94.53 Aligned_cols=112 Identities=12% Similarity=0.109 Sum_probs=70.0
Q ss_pred CCCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeC-CHHHHHHHHHhh-----cCCC-------CCCceeechhhhHhh
Q 015771 29 FSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEP-SQSMQRAGQSLM-----QGPK-------DLPLIHSYNSIQALN 95 (400)
Q Consensus 29 ~~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~-S~~ml~~a~~ll-----~~~~-------~~~~~~~~~~~~~l~ 95 (400)
..+.+|||+|||+|..+.+++.. + ..+|+++|. |+.|++.++..+ +... ++.+... .+.+..
T Consensus 78 ~~~~~vLDlG~G~G~~~~~~a~~-~--~~~v~~~D~s~~~~~~~a~~n~~~N~~~~~~~~~~~~~~v~~~~~--~~~~~~ 152 (281)
T 3bzb_A 78 IAGKTVCELGAGAGLVSIVAFLA-G--ADQVVATDYPDPEILNSLESNIREHTANSCSSETVKRASPKVVPY--RWGDSP 152 (281)
T ss_dssp TTTCEEEETTCTTSHHHHHHHHT-T--CSEEEEEECSCHHHHHHHHHHHHTTCC----------CCCEEEEC--CTTSCT
T ss_pred cCCCeEEEecccccHHHHHHHHc-C--CCEEEEEeCCCHHHHHHHHHHHHHhhhhhcccccCCCCCeEEEEe--cCCCcc
Confidence 45679999999999988877653 2 348999999 899999999887 3211 1111110 011101
Q ss_pred hhccc--CCCcccEEeecccccCCCCHHHHHHHHHHHHhc--c--CCeEEEE-cCCC
Q 015771 96 KDISK--SEREHDLVIASYVLGEVPSLQDRITIVRQLWDL--T--RDVLVLV-EPGT 145 (400)
Q Consensus 96 ~~l~~--~~~~~DLVias~~L~eL~~~~~r~~~i~~Lw~~--~--gG~LVlV-E~Gt 145 (400)
..+.. ..++||+|+++.++.+.+........+.++++. + ||.++++ .+..
T Consensus 153 ~~~~~~~~~~~fD~Ii~~dvl~~~~~~~~ll~~l~~~Lk~~~p~~gG~l~v~~~~~~ 209 (281)
T 3bzb_A 153 DSLQRCTGLQRFQVVLLADLLSFHQAHDALLRSVKMLLALPANDPTAVALVTFTHHR 209 (281)
T ss_dssp HHHHHHHSCSSBSEEEEESCCSCGGGHHHHHHHHHHHBCCTTTCTTCEEEEEECC--
T ss_pred HHHHhhccCCCCCEEEEeCcccChHHHHHHHHHHHHHhcccCCCCCCEEEEEEEeee
Confidence 11110 246899999999998876555555666666641 5 8987665 4433
|
| >1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A* | Back alignment and structure |
|---|
Probab=98.75 E-value=3.8e-08 Score=96.60 Aligned_cols=114 Identities=18% Similarity=0.241 Sum_probs=80.8
Q ss_pred HHHHCCCCCCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCC---CCCceeechhhhHhhhhc
Q 015771 22 FARRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK---DLPLIHSYNSIQALNKDI 98 (400)
Q Consensus 22 l~~rlp~~~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~---~~~~~~~~~~~~~l~~~l 98 (400)
+.+.++.-.+.+|||+|||+|..+..+.+.++. .+++++|. +.|++.|++.+.... ++.++.. ++...+
T Consensus 175 l~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~~~--~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~-----d~~~~~ 246 (360)
T 1tw3_A 175 PAAAYDWTNVRHVLDVGGGKGGFAAAIARRAPH--VSATVLEM-AGTVDTARSYLKDEGLSDRVDVVEG-----DFFEPL 246 (360)
T ss_dssp HHHHSCCTTCSEEEEETCTTSHHHHHHHHHCTT--CEEEEEEC-TTHHHHHHHHHHHTTCTTTEEEEEC-----CTTSCC
T ss_pred HHHhCCCccCcEEEEeCCcCcHHHHHHHHhCCC--CEEEEecC-HHHHHHHHHHHHhcCCCCceEEEeC-----CCCCCC
Confidence 344443234579999999999999998888763 58999999 999999998775432 1222211 222222
Q ss_pred ccCCCcccEEeecccccCCCCHHHHHHHHHHHHhc--cCCeEEEEcCC-CCC
Q 015771 99 SKSEREHDLVIASYVLGEVPSLQDRITIVRQLWDL--TRDVLVLVEPG-TPQ 147 (400)
Q Consensus 99 ~~~~~~~DLVias~~L~eL~~~~~r~~~i~~Lw~~--~gG~LVlVE~G-tp~ 147 (400)
...||+|+++++|++++ ..+...+++++.+. +||.|+|+|.. .|.
T Consensus 247 ---~~~~D~v~~~~vl~~~~-~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~ 294 (360)
T 1tw3_A 247 ---PRKADAIILSFVLLNWP-DHDAVRILTRCAEALEPGGRILIHERDDLHE 294 (360)
T ss_dssp ---SSCEEEEEEESCGGGSC-HHHHHHHHHHHHHTEEEEEEEEEEECCBCGG
T ss_pred ---CCCccEEEEcccccCCC-HHHHHHHHHHHHHhcCCCcEEEEEEEeccCC
Confidence 23499999999999986 44556777777764 89999999987 543
|
| >1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A* | Back alignment and structure |
|---|
Probab=98.75 E-value=1.5e-08 Score=87.69 Aligned_cols=129 Identities=10% Similarity=0.037 Sum_probs=75.7
Q ss_pred HHHHHHHCCCC-CCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCCCCceeechhhhHhhhh
Q 015771 19 TESFARRLPGF-SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKD 97 (400)
Q Consensus 19 L~el~~rlp~~-~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~~~~~~~~~~~~~l~~~ 97 (400)
+.++.+++... .+.+|||+|||+|..+..++..++ ...+++++|.|+ |++. .++.++.....-......
T Consensus 10 l~~~~~~~~~~~~~~~vLd~G~G~G~~~~~l~~~~~-~~~~v~~~D~~~-~~~~--------~~~~~~~~d~~~~~~~~~ 79 (180)
T 1ej0_A 10 LDEIQQSDKLFKPGMTVVDLGAAPGGWSQYVVTQIG-GKGRIIACDLLP-MDPI--------VGVDFLQGDFRDELVMKA 79 (180)
T ss_dssp HHHHHHHHCCCCTTCEEEEESCTTCHHHHHHHHHHC-TTCEEEEEESSC-CCCC--------TTEEEEESCTTSHHHHHH
T ss_pred HHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHHhC-CCCeEEEEECcc-cccc--------CcEEEEEcccccchhhhh
Confidence 33444444322 346999999999999998887763 236899999999 7543 122222111000000000
Q ss_pred cc--cCCCcccEEeecccccCCCCHH--HH------HHHHHHHHhc--cCCeEEEEcCCCCCchHHHHHHHH
Q 015771 98 IS--KSEREHDLVIASYVLGEVPSLQ--DR------ITIVRQLWDL--TRDVLVLVEPGTPQGSSIISQMRS 157 (400)
Q Consensus 98 l~--~~~~~~DLVias~~L~eL~~~~--~r------~~~i~~Lw~~--~gG~LVlVE~Gtp~Gf~~I~~aR~ 157 (400)
++ ...++||+|++..+++...... .. ..++.++.+. +||.+++..+........+..+++
T Consensus 80 ~~~~~~~~~~D~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~ 151 (180)
T 1ej0_A 80 LLERVGDSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVFQGEGFDEYLREIRS 151 (180)
T ss_dssp HHHHHTTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEESSTTHHHHHHHHHH
T ss_pred hhccCCCCceeEEEECCCccccCCCccchHHHHHHHHHHHHHHHHHcCCCcEEEEEEecCCcHHHHHHHHHH
Confidence 10 2346899999988887765431 11 3455555543 799999988876655444433333
|
| >3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.75 E-value=6.3e-08 Score=90.53 Aligned_cols=102 Identities=10% Similarity=0.092 Sum_probs=67.9
Q ss_pred CCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCC---CCCceeechhhhHhhhhccc--CCCc
Q 015771 30 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK---DLPLIHSYNSIQALNKDISK--SERE 104 (400)
Q Consensus 30 ~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~---~~~~~~~~~~~~~l~~~l~~--~~~~ 104 (400)
.+.+|||+|||+|..+..++..++ ...+|+++|.|+.|++.|+..++... ++.++.. +....++. ..++
T Consensus 63 ~~~~VLdiG~G~G~~~~~la~~~~-~~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~-----d~~~~l~~~~~~~~ 136 (248)
T 3tfw_A 63 QAKRILEIGTLGGYSTIWMARELP-ADGQLLTLEADAHHAQVARENLQLAGVDQRVTLREG-----PALQSLESLGECPA 136 (248)
T ss_dssp TCSEEEEECCTTSHHHHHHHTTSC-TTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEES-----CHHHHHHTCCSCCC
T ss_pred CCCEEEEecCCchHHHHHHHHhCC-CCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEc-----CHHHHHHhcCCCCC
Confidence 457999999999999999887775 24689999999999999999886432 1222221 12111221 2348
Q ss_pred ccEEeecccccCCCCHHHHHHHHHHHHhc--cCCeEEEEcC
Q 015771 105 HDLVIASYVLGEVPSLQDRITIVRQLWDL--TRDVLVLVEP 143 (400)
Q Consensus 105 ~DLVias~~L~eL~~~~~r~~~i~~Lw~~--~gG~LVlVE~ 143 (400)
||+|++.... .....+++.+.+. +||+||+-+.
T Consensus 137 fD~V~~d~~~------~~~~~~l~~~~~~LkpGG~lv~~~~ 171 (248)
T 3tfw_A 137 FDLIFIDADK------PNNPHYLRWALRYSRPGTLIIGDNV 171 (248)
T ss_dssp CSEEEECSCG------GGHHHHHHHHHHTCCTTCEEEEECC
T ss_pred eEEEEECCch------HHHHHHHHHHHHhcCCCeEEEEeCC
Confidence 9999986532 2223455555543 7998887543
|
| >1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A* | Back alignment and structure |
|---|
Probab=98.75 E-value=2.2e-08 Score=95.66 Aligned_cols=108 Identities=18% Similarity=0.099 Sum_probs=70.3
Q ss_pred CCeEEEEccchhHH----HHHHHHHCCCC--CcEEEEEeCCHHHHHHHHHhhcCC---CCCC-----------------c
Q 015771 31 PAKVLDFGAGTGSA----FWALREVWPRS--LEKVNLVEPSQSMQRAGQSLMQGP---KDLP-----------------L 84 (400)
Q Consensus 31 p~~VLDvG~G~Gt~----~~Al~~~~~~~--~~~v~~vD~S~~ml~~a~~ll~~~---~~~~-----------------~ 84 (400)
+.+|||+|||+|.- +..+++.++.. ..+|+++|+|+.|++.|+..+-.. .++| .
T Consensus 106 ~~rIld~GCgTGee~ysiAi~L~e~~~~~~~~~~I~atDis~~~L~~Ar~~~y~~~~~~~~~~~~~~~~f~~~~~~~~~~ 185 (274)
T 1af7_A 106 EYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHEGL 185 (274)
T ss_dssp CEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSCSE
T ss_pred CcEEEEeeccCChhHHHHHHHHHHhcccCCCCeEEEEEECCHHHHHHHHhcCCchhhhhcCCHHHHHHHhhccccCCCCc
Confidence 46999999999973 33455555421 248999999999999999864210 0111 0
Q ss_pred ee--------echhhhHhhhhcccC-CCcccEEeecccccCCCCHHHHHHHHHHHHhc--cCCeEEE
Q 015771 85 IH--------SYNSIQALNKDISKS-EREHDLVIASYVLGEVPSLQDRITIVRQLWDL--TRDVLVL 140 (400)
Q Consensus 85 ~~--------~~~~~~~l~~~l~~~-~~~~DLVias~~L~eL~~~~~r~~~i~~Lw~~--~gG~LVl 140 (400)
.. ..+...++.. .+.+ .++||+|+|.++|.++. ...+..++.++.+. |||+|++
T Consensus 186 ~~v~~~lr~~V~F~~~dl~~-~~~~~~~~fDlI~crnvliyf~-~~~~~~vl~~~~~~L~pgG~L~l 250 (274)
T 1af7_A 186 VRVRQELANYVEFSSVNLLE-KQYNVPGPFDAIFCRNVMIYFD-KTTQEDILRRFVPLLKPDGLLFA 250 (274)
T ss_dssp EEECHHHHTTEEEEECCTTC-SSCCCCCCEEEEEECSSGGGSC-HHHHHHHHHHHGGGEEEEEEEEE
T ss_pred eeechhhcccCeEEecccCC-CCCCcCCCeeEEEECCchHhCC-HHHHHHHHHHHHHHhCCCcEEEE
Confidence 00 0000112221 1112 36899999999999995 66677888888775 8999886
|
| >1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31 | Back alignment and structure |
|---|
Probab=98.74 E-value=3.7e-08 Score=99.73 Aligned_cols=122 Identities=7% Similarity=-0.012 Sum_probs=78.8
Q ss_pred HHHHHHHHCCCCCCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHH-------HHhhcCCC----CCCcee
Q 015771 18 VTESFARRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAG-------QSLMQGPK----DLPLIH 86 (400)
Q Consensus 18 vL~el~~rlp~~~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a-------~~ll~~~~----~~~~~~ 86 (400)
++..+...+..-.+.+|||+|||+|..+..++..++ ..+|++||.|+.|++.| +..+...+ ++.++.
T Consensus 230 ~v~~ml~~l~l~~g~~VLDLGCGsG~la~~LA~~~g--~~~V~GVDis~~~l~~A~~Ml~~ar~~~~~~Gl~~~nV~~i~ 307 (433)
T 1u2z_A 230 FLSDVYQQCQLKKGDTFMDLGSGVGNCVVQAALECG--CALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSL 307 (433)
T ss_dssp HHHHHHHHTTCCTTCEEEEESCTTSHHHHHHHHHHC--CSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEE
T ss_pred HHHHHHHhcCCCCCCEEEEeCCCcCHHHHHHHHHCC--CCEEEEEeCCHHHHHHHHHhHHHHHHHHHHcCCCCCceEEEE
Confidence 344455555433457999999999999988887665 24899999999999988 66554321 222222
Q ss_pred echhhhHhhh--hcccCCCcccEEeecccccCCCCHHHHHHHHHHHHhc--cCCeEEEEcCCCCCch
Q 015771 87 SYNSIQALNK--DISKSEREHDLVIASYVLGEVPSLQDRITIVRQLWDL--TRDVLVLVEPGTPQGS 149 (400)
Q Consensus 87 ~~~~~~~l~~--~l~~~~~~~DLVias~~L~eL~~~~~r~~~i~~Lw~~--~gG~LVlVE~Gtp~Gf 149 (400)
.. +... .+.....+||+|++++++. . .+....+.++.+. +||.||+.++-.|..|
T Consensus 308 gD----~~~~~~~~~~~~~~FDvIvvn~~l~-~---~d~~~~L~el~r~LKpGG~lVi~d~f~p~~~ 366 (433)
T 1u2z_A 308 KK----SFVDNNRVAELIPQCDVILVNNFLF-D---EDLNKKVEKILQTAKVGCKIISLKSLRSLTY 366 (433)
T ss_dssp SS----CSTTCHHHHHHGGGCSEEEECCTTC-C---HHHHHHHHHHHTTCCTTCEEEESSCSSCTTC
T ss_pred cC----ccccccccccccCCCCEEEEeCccc-c---ccHHHHHHHHHHhCCCCeEEEEeeccCCccc
Confidence 11 0100 0101135799999987762 2 2344556677664 8999999988766655
|
| >3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=98.74 E-value=2.7e-08 Score=91.11 Aligned_cols=119 Identities=13% Similarity=0.156 Sum_probs=74.3
Q ss_pred CCCeEEEEccc-hhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCC-CCCceeechhhhHhhhhcccCCCcccE
Q 015771 30 SPAKVLDFGAG-TGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK-DLPLIHSYNSIQALNKDISKSEREHDL 107 (400)
Q Consensus 30 ~p~~VLDvG~G-~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~-~~~~~~~~~~~~~l~~~l~~~~~~~DL 107 (400)
.+.+|||+||| +|..+..++..+ ..+|+++|.|+.|++.|+..+.... ++.++.. +.....+...++||+
T Consensus 55 ~~~~vLDlG~G~~G~~~~~la~~~---~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~-----d~~~~~~~~~~~fD~ 126 (230)
T 3evz_A 55 GGEVALEIGTGHTAMMALMAEKFF---NCKVTATEVDEEFFEYARRNIERNNSNVRLVKS-----NGGIIKGVVEGTFDV 126 (230)
T ss_dssp SSCEEEEECCTTTCHHHHHHHHHH---CCEEEEEECCHHHHHHHHHHHHHTTCCCEEEEC-----SSCSSTTTCCSCEEE
T ss_pred CCCEEEEcCCCHHHHHHHHHHHhc---CCEEEEEECCHHHHHHHHHHHHHhCCCcEEEeC-----CchhhhhcccCceeE
Confidence 34799999999 999988887654 3589999999999999998876432 2222221 111001123478999
Q ss_pred EeecccccCCCCH----------------HHHHHHHHHHHhc--cCCeEEEEcCCCCCchHHHHHHHHHH
Q 015771 108 VIASYVLGEVPSL----------------QDRITIVRQLWDL--TRDVLVLVEPGTPQGSSIISQMRSHI 159 (400)
Q Consensus 108 Vias~~L~eL~~~----------------~~r~~~i~~Lw~~--~gG~LVlVE~Gtp~Gf~~I~~aR~~l 159 (400)
|++...+...+.. .....+++.+.+. +||.|+++-+. +.......++.+
T Consensus 127 I~~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~---~~~~~~~~~~~l 193 (230)
T 3evz_A 127 IFSAPPYYDKPLGRVLTEREAIGGGKYGEEFSVKLLEEAFDHLNPGGKVALYLPD---KEKLLNVIKERG 193 (230)
T ss_dssp EEECCCCC---------------CCSSSCHHHHHHHHHHGGGEEEEEEEEEEEES---CHHHHHHHHHHH
T ss_pred EEECCCCcCCccccccChhhhhccCccchHHHHHHHHHHHHHhCCCeEEEEEecc---cHhHHHHHHHHH
Confidence 9987655443221 1124456665553 89999997543 334445555554
|
| >4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A* | Back alignment and structure |
|---|
Probab=98.73 E-value=3.3e-08 Score=103.65 Aligned_cols=99 Identities=20% Similarity=0.206 Sum_probs=69.1
Q ss_pred HHHHHHHHHHHHHCCCCCCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCC--CCceeechh
Q 015771 13 LFTLLVTESFARRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKD--LPLIHSYNS 90 (400)
Q Consensus 13 a~~~~vL~el~~rlp~~~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~--~~~~~~~~~ 90 (400)
..+...+..+.+.++ +|.+|||||||.|..+..++. ...+|++||.|+.|++.|+..+...+. +.+... .
T Consensus 51 ~~i~~~~~~~~~~~~--~~~~vLDvGCG~G~~~~~la~----~ga~V~giD~~~~~i~~a~~~a~~~~~~~~~~~~~--~ 122 (569)
T 4azs_A 51 DLITEQYDNLSRALG--RPLNVLDLGCAQGFFSLSLAS----KGATIVGIDFQQENINVCRALAEENPDFAAEFRVG--R 122 (569)
T ss_dssp HHHHHHHHHHHHHHT--SCCEEEEETCTTSHHHHHHHH----TTCEEEEEESCHHHHHHHHHHHHTSTTSEEEEEEC--C
T ss_pred HHHHHHHHHHHhhcC--CCCeEEEECCCCcHHHHHHHh----CCCEEEEECCCHHHHHHHHHHHHhcCCCceEEEEC--C
Confidence 344445555555443 468999999999999888874 356899999999999999988765432 223222 1
Q ss_pred hhHhhhhcccCCCcccEEeecccccCCCCHH
Q 015771 91 IQALNKDISKSEREHDLVIASYVLGEVPSLQ 121 (400)
Q Consensus 91 ~~~l~~~l~~~~~~~DLVias~~L~eL~~~~ 121 (400)
..++... ...++||+|++.-+|.+++++.
T Consensus 123 ~~~~~~~--~~~~~fD~v~~~e~~ehv~~~~ 151 (569)
T 4azs_A 123 IEEVIAA--LEEGEFDLAIGLSVFHHIVHLH 151 (569)
T ss_dssp HHHHHHH--CCTTSCSEEEEESCHHHHHHHH
T ss_pred HHHHhhh--ccCCCccEEEECcchhcCCCHH
Confidence 2333221 2456899999999999997543
|
| >3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora} | Back alignment and structure |
|---|
Probab=98.73 E-value=7.5e-08 Score=94.43 Aligned_cols=115 Identities=13% Similarity=0.176 Sum_probs=73.9
Q ss_pred HHHHHHCCCCCCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCCCCceeechhhhHhhhhcc
Q 015771 20 ESFARRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDIS 99 (400)
Q Consensus 20 ~el~~rlp~~~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~~~~~~~~~~~~~l~~~l~ 99 (400)
..+...++--...+|||+|||+|..+.++++.++. .+++++|.+ .++. +..+........+... ..++...+
T Consensus 174 ~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~--~~~~~~D~~-~~~~--~~~~~~~~~~~~v~~~--~~d~~~~~- 245 (348)
T 3lst_A 174 LILARAGDFPATGTVADVGGGRGGFLLTVLREHPG--LQGVLLDRA-EVVA--RHRLDAPDVAGRWKVV--EGDFLREV- 245 (348)
T ss_dssp HHHHHHSCCCSSEEEEEETCTTSHHHHHHHHHCTT--EEEEEEECH-HHHT--TCCCCCGGGTTSEEEE--ECCTTTCC-
T ss_pred HHHHHhCCccCCceEEEECCccCHHHHHHHHHCCC--CEEEEecCH-HHhh--cccccccCCCCCeEEE--ecCCCCCC-
Confidence 44555554223469999999999999999988873 579999994 4443 2222211101111110 11121112
Q ss_pred cCCCcccEEeecccccCCCCHHHHHHHHHHHHhc--cCCeEEEEcCCCC
Q 015771 100 KSEREHDLVIASYVLGEVPSLQDRITIVRQLWDL--TRDVLVLVEPGTP 146 (400)
Q Consensus 100 ~~~~~~DLVias~~L~eL~~~~~r~~~i~~Lw~~--~gG~LVlVE~Gtp 146 (400)
+ .||+|++.++|++++ ..+...+++++.+. |||.|+|+|.-.+
T Consensus 246 -p--~~D~v~~~~vlh~~~-d~~~~~~L~~~~~~LkpgG~l~i~e~~~~ 290 (348)
T 3lst_A 246 -P--HADVHVLKRILHNWG-DEDSVRILTNCRRVMPAHGRVLVIDAVVP 290 (348)
T ss_dssp -C--CCSEEEEESCGGGSC-HHHHHHHHHHHHHTCCTTCEEEEEECCBC
T ss_pred -C--CCcEEEEehhccCCC-HHHHHHHHHHHHHhcCCCCEEEEEEeccC
Confidence 2 899999999999997 45556777777764 8999999987443
|
| >1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1 | Back alignment and structure |
|---|
Probab=98.73 E-value=4.4e-08 Score=94.97 Aligned_cols=110 Identities=15% Similarity=0.084 Sum_probs=74.6
Q ss_pred HHHHHHCCCCCCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCC--CCCceeechhhhHhhhh
Q 015771 20 ESFARRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK--DLPLIHSYNSIQALNKD 97 (400)
Q Consensus 20 ~el~~rlp~~~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~--~~~~~~~~~~~~~l~~~ 97 (400)
..+...+....+.+|||+|||+|..+..+++..+ ...+|+++|.|+.|++.|+..+.... ++.++. .+....
T Consensus 65 ~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~~~-~~~~v~gvD~s~~~~~~a~~~~~~~g~~~v~~~~-----~d~~~~ 138 (317)
T 1dl5_A 65 ALFMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVG-EKGLVVSVEYSRKICEIAKRNVERLGIENVIFVC-----GDGYYG 138 (317)
T ss_dssp HHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHC-TTCEEEEEESCHHHHHHHHHHHHHTTCCSEEEEE-----SCGGGC
T ss_pred HHHHHhcCCCCcCEEEEecCCchHHHHHHHHhcC-CCCEEEEEECCHHHHHHHHHHHHHcCCCCeEEEE-----CChhhc
Confidence 3344444333457999999999999888877654 23579999999999999998875432 222221 122221
Q ss_pred cccCCCcccEEeecccccCCCCHHHHHHHHHHHHhccCCeEEEEcC
Q 015771 98 ISKSEREHDLVIASYVLGEVPSLQDRITIVRQLWDLTRDVLVLVEP 143 (400)
Q Consensus 98 l~~~~~~~DLVias~~L~eL~~~~~r~~~i~~Lw~~~gG~LVlVE~ 143 (400)
.+ ..++||+|++..++.+++ ..+.+++ +|||.|++...
T Consensus 139 ~~-~~~~fD~Iv~~~~~~~~~------~~~~~~L-kpgG~lvi~~~ 176 (317)
T 1dl5_A 139 VP-EFSPYDVIFVTVGVDEVP------ETWFTQL-KEGGRVIVPIN 176 (317)
T ss_dssp CG-GGCCEEEEEECSBBSCCC------HHHHHHE-EEEEEEEEEBC
T ss_pred cc-cCCCeEEEEEcCCHHHHH------HHHHHhc-CCCcEEEEEEC
Confidence 21 346899999999999986 1234444 37999998854
|
| >3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C* | Back alignment and structure |
|---|
Probab=98.71 E-value=3.9e-08 Score=91.58 Aligned_cols=108 Identities=13% Similarity=0.129 Sum_probs=70.6
Q ss_pred HHCCCCCCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCC--C-CCceeechhhhHhhhhccc
Q 015771 24 RRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK--D-LPLIHSYNSIQALNKDISK 100 (400)
Q Consensus 24 ~rlp~~~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~--~-~~~~~~~~~~~~l~~~l~~ 100 (400)
..+....+.+|||+|||+|..+.+++...+ ...+++++|.|+.|++.|+..++... + +.++. .++... .
T Consensus 87 ~~~~~~~~~~vldiG~G~G~~~~~l~~~~~-~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~v~~~~-----~d~~~~--~ 158 (255)
T 3mb5_A 87 AYAGISPGDFIVEAGVGSGALTLFLANIVG-PEGRVVSYEIREDFAKLAWENIKWAGFDDRVTIKL-----KDIYEG--I 158 (255)
T ss_dssp HHTTCCTTCEEEEECCTTSHHHHHHHHHHC-TTSEEEEECSCHHHHHHHHHHHHHHTCTTTEEEEC-----SCGGGC--C
T ss_pred HhhCCCCCCEEEEecCCchHHHHHHHHHhC-CCeEEEEEecCHHHHHHHHHHHHHcCCCCceEEEE-----Cchhhc--c
Confidence 333333457999999999999988887743 24689999999999999999875432 2 22221 122222 2
Q ss_pred CCCcccEEeecccccCCCCHHHHHHHHHHHHhccCCeEEEEcCCC
Q 015771 101 SEREHDLVIASYVLGEVPSLQDRITIVRQLWDLTRDVLVLVEPGT 145 (400)
Q Consensus 101 ~~~~~DLVias~~L~eL~~~~~r~~~i~~Lw~~~gG~LVlVE~Gt 145 (400)
..++||+|++. +++.......+.++++ +||.++++++..
T Consensus 159 ~~~~~D~v~~~-----~~~~~~~l~~~~~~L~-~gG~l~~~~~~~ 197 (255)
T 3mb5_A 159 EEENVDHVILD-----LPQPERVVEHAAKALK-PGGFFVAYTPCS 197 (255)
T ss_dssp CCCSEEEEEEC-----SSCGGGGHHHHHHHEE-EEEEEEEEESSH
T ss_pred CCCCcCEEEEC-----CCCHHHHHHHHHHHcC-CCCEEEEEECCH
Confidence 34679999983 3444333333444442 799999998754
|
| >1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=98.71 E-value=6e-08 Score=83.99 Aligned_cols=106 Identities=12% Similarity=0.047 Sum_probs=65.6
Q ss_pred CCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCC-CCCceeechhhhHhhhhcccCCCcccEE
Q 015771 30 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK-DLPLIHSYNSIQALNKDISKSEREHDLV 108 (400)
Q Consensus 30 ~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~-~~~~~~~~~~~~~l~~~l~~~~~~~DLV 108 (400)
.+.+|||+|||+|..+..++... .+++++|.|+.|++.|+..+.... ++.++... ..+.....+...++||+|
T Consensus 41 ~~~~vLD~GcG~G~~~~~l~~~~----~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d--~~~~~~~~~~~~~~~D~i 114 (171)
T 1ws6_A 41 RRGRFLDPFAGSGAVGLEAASEG----WEAVLVEKDPEAVRLLKENVRRTGLGARVVALP--VEVFLPEAKAQGERFTVA 114 (171)
T ss_dssp TCCEEEEETCSSCHHHHHHHHTT----CEEEEECCCHHHHHHHHHHHHHHTCCCEEECSC--HHHHHHHHHHTTCCEEEE
T ss_pred CCCeEEEeCCCcCHHHHHHHHCC----CeEEEEeCCHHHHHHHHHHHHHcCCceEEEecc--HHHHHHhhhccCCceEEE
Confidence 34799999999999988877643 249999999999999998775432 22222221 111111111123479999
Q ss_pred eecccccCCCCHHHHHHHHHHHHh--ccCCeEEEEcCC
Q 015771 109 IASYVLGEVPSLQDRITIVRQLWD--LTRDVLVLVEPG 144 (400)
Q Consensus 109 ias~~L~eL~~~~~r~~~i~~Lw~--~~gG~LVlVE~G 144 (400)
++...++ ....+....+.+ .+ ++||.+++..+.
T Consensus 115 ~~~~~~~--~~~~~~~~~~~~-~~~L~~gG~~~~~~~~ 149 (171)
T 1ws6_A 115 FMAPPYA--MDLAALFGELLA-SGLVEAGGLYVLQHPK 149 (171)
T ss_dssp EECCCTT--SCTTHHHHHHHH-HTCEEEEEEEEEEEET
T ss_pred EECCCCc--hhHHHHHHHHHh-hcccCCCcEEEEEeCC
Confidence 9987665 223333333332 13 279998876554
|
| >3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A* | Back alignment and structure |
|---|
Probab=98.71 E-value=1.1e-07 Score=94.06 Aligned_cols=112 Identities=18% Similarity=0.306 Sum_probs=78.6
Q ss_pred HHHHHHHCCCCCC-CeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCCCCceeechhhhHhhhh
Q 015771 19 TESFARRLPGFSP-AKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKD 97 (400)
Q Consensus 19 L~el~~rlp~~~p-~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~~~~~~~~~~~~~l~~~ 97 (400)
...+...++.|.+ .+|||+|||+|..+.++.+.+|. .+++++|. +.|++.++.. .++.++.. ++...
T Consensus 189 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~--~~~~~~D~-~~~~~~a~~~----~~v~~~~~-----D~~~~ 256 (364)
T 3p9c_A 189 TKKLLELYHGFEGLGTLVDVGGGVGATVAAIAAHYPT--IKGVNFDL-PHVISEAPQF----PGVTHVGG-----DMFKE 256 (364)
T ss_dssp HHHHHHHCCTTTTCSEEEEETCTTSHHHHHHHHHCTT--CEEEEEEC-HHHHTTCCCC----TTEEEEEC-----CTTTC
T ss_pred HHHHHHhcccccCCCEEEEeCCCCCHHHHHHHHHCCC--CeEEEecC-HHHHHhhhhc----CCeEEEeC-----CcCCC
Confidence 4556666665554 79999999999999999998874 47999999 8887665431 22222221 22222
Q ss_pred cccCCCcccEEeecccccCCCCHHHHHHHHHHHHhc--cCCeEEEEcCCCCC
Q 015771 98 ISKSEREHDLVIASYVLGEVPSLQDRITIVRQLWDL--TRDVLVLVEPGTPQ 147 (400)
Q Consensus 98 l~~~~~~~DLVias~~L~eL~~~~~r~~~i~~Lw~~--~gG~LVlVE~Gtp~ 147 (400)
+ +. . |+|+++++|+.++ ..+...+++++.+. |||.|+|+|.-.+.
T Consensus 257 ~--p~-~-D~v~~~~vlh~~~-d~~~~~~L~~~~~~L~pgG~l~i~e~~~~~ 303 (364)
T 3p9c_A 257 V--PS-G-DTILMKWILHDWS-DQHCATLLKNCYDALPAHGKVVLVQCILPV 303 (364)
T ss_dssp C--CC-C-SEEEEESCGGGSC-HHHHHHHHHHHHHHSCTTCEEEEEECCBCS
T ss_pred C--CC-C-CEEEehHHhccCC-HHHHHHHHHHHHHHcCCCCEEEEEEeccCC
Confidence 2 22 2 9999999999986 45566777777663 89999999976544
|
| >2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53 | Back alignment and structure |
|---|
Probab=98.70 E-value=1.3e-07 Score=86.28 Aligned_cols=106 Identities=9% Similarity=0.043 Sum_probs=67.9
Q ss_pred CCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCC--CCCCceeechhhhHhhhhcccCCCcccEE
Q 015771 31 PAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGP--KDLPLIHSYNSIQALNKDISKSEREHDLV 108 (400)
Q Consensus 31 p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~--~~~~~~~~~~~~~~l~~~l~~~~~~~DLV 108 (400)
..+|||+|||+|..+..++..++ ..++++||.|+.|++.|+..+... .++.++... ...+... ...+.||.|
T Consensus 39 ~~~vLDiGcG~G~~~~~la~~~p--~~~v~giD~s~~~l~~a~~~~~~~~~~nv~~~~~d--~~~l~~~--~~~~~~d~v 112 (213)
T 2fca_A 39 NPIHIEVGTGKGQFISGMAKQNP--DINYIGIELFKSVIVTAVQKVKDSEAQNVKLLNID--ADTLTDV--FEPGEVKRV 112 (213)
T ss_dssp CCEEEEECCTTSHHHHHHHHHCT--TSEEEEECSCHHHHHHHHHHHHHSCCSSEEEECCC--GGGHHHH--CCTTSCCEE
T ss_pred CceEEEEecCCCHHHHHHHHHCC--CCCEEEEEechHHHHHHHHHHHHcCCCCEEEEeCC--HHHHHhh--cCcCCcCEE
Confidence 46899999999999999888775 358999999999999999877533 233333221 1112111 234679999
Q ss_pred eecccccCCCC--------HHHHHHHHHHHHhccCCeEEEEcC
Q 015771 109 IASYVLGEVPS--------LQDRITIVRQLWDLTRDVLVLVEP 143 (400)
Q Consensus 109 ias~~L~eL~~--------~~~r~~~i~~Lw~~~gG~LVlVE~ 143 (400)
++.+...+... .......+.++++ +||.|++...
T Consensus 113 ~~~~~~p~~~~~~~~~rl~~~~~l~~~~~~Lk-pgG~l~~~td 154 (213)
T 2fca_A 113 YLNFSDPWPKKRHEKRRLTYSHFLKKYEEVMG-KGGSIHFKTD 154 (213)
T ss_dssp EEESCCCCCSGGGGGGSTTSHHHHHHHHHHHT-TSCEEEEEES
T ss_pred EEECCCCCcCccccccccCcHHHHHHHHHHcC-CCCEEEEEeC
Confidence 87664332211 1122333444443 8999998753
|
| >3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=98.70 E-value=3.9e-08 Score=89.73 Aligned_cols=115 Identities=12% Similarity=0.093 Sum_probs=71.5
Q ss_pred HHHHHHHHHCCCCCCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCC---CCceeechhhhH
Q 015771 17 LVTESFARRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKD---LPLIHSYNSIQA 93 (400)
Q Consensus 17 ~vL~el~~rlp~~~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~---~~~~~~~~~~~~ 93 (400)
++|..+.... .+.+|||+|||+|..+..++..++ ...+|+++|.|+.|++.++..++.... +.++.... ...
T Consensus 54 ~~l~~l~~~~---~~~~vLdiG~G~G~~~~~la~~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~-~~~ 128 (225)
T 3tr6_A 54 QLLALLVKLM---QAKKVIDIGTFTGYSAIAMGLALP-KDGTLITCDVDEKSTALAKEYWEKAGLSDKIGLRLSPA-KDT 128 (225)
T ss_dssp HHHHHHHHHH---TCSEEEEECCTTSHHHHHHHTTCC-TTCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCH-HHH
T ss_pred HHHHHHHHhh---CCCEEEEeCCcchHHHHHHHHhCC-CCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeCCH-HHH
Confidence 3444444332 457999999999999999887775 247899999999999999998864321 22222210 011
Q ss_pred hhhhccc--CCCcccEEeecccccCCCCHHHHHHHHHHHHhc--cCCeEEEEcC
Q 015771 94 LNKDISK--SEREHDLVIASYVLGEVPSLQDRITIVRQLWDL--TRDVLVLVEP 143 (400)
Q Consensus 94 l~~~l~~--~~~~~DLVias~~L~eL~~~~~r~~~i~~Lw~~--~gG~LVlVE~ 143 (400)
+. .+.. ..++||+|++.... .....++..+++. +||+||+-+.
T Consensus 129 ~~-~~~~~~~~~~fD~v~~~~~~------~~~~~~l~~~~~~L~pgG~lv~~~~ 175 (225)
T 3tr6_A 129 LA-ELIHAGQAWQYDLIYIDADK------ANTDLYYEESLKLLREGGLIAVDNV 175 (225)
T ss_dssp HH-HHHTTTCTTCEEEEEECSCG------GGHHHHHHHHHHHEEEEEEEEEECS
T ss_pred HH-HhhhccCCCCccEEEECCCH------HHHHHHHHHHHHhcCCCcEEEEeCC
Confidence 11 1110 11689999965531 2223345554443 7999987654
|
| >1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32 | Back alignment and structure |
|---|
Probab=98.70 E-value=4.6e-08 Score=87.74 Aligned_cols=114 Identities=11% Similarity=0.106 Sum_probs=70.6
Q ss_pred HHHHHHHHHHHHHCCCCCCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCCCCceeechhhh
Q 015771 13 LFTLLVTESFARRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQ 92 (400)
Q Consensus 13 a~~~~vL~el~~rlp~~~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~~~~~~~~~~~~ 92 (400)
.....++..+... +...+.+|||+|||+|..+.+++.. + ..+++++|.|+.|++.++..+. ++.++..
T Consensus 35 ~~~~~l~~~~~~~-~~~~~~~vlD~gcG~G~~~~~l~~~-~--~~~v~~vD~~~~~~~~a~~~~~---~~~~~~~----- 102 (200)
T 1ne2_A 35 STAAYFLIEIYND-GNIGGRSVIDAGTGNGILACGSYLL-G--AESVTAFDIDPDAIETAKRNCG---GVNFMVA----- 102 (200)
T ss_dssp HHHHHHHHHHHHH-TSSBTSEEEEETCTTCHHHHHHHHT-T--BSEEEEEESCHHHHHHHHHHCT---TSEEEEC-----
T ss_pred HHHHHHHHHHHhc-CCCCCCEEEEEeCCccHHHHHHHHc-C--CCEEEEEECCHHHHHHHHHhcC---CCEEEEC-----
Confidence 3334444444333 3345679999999999998887754 2 3579999999999999998775 2333322
Q ss_pred HhhhhcccCCCcccEEeecccccCCCCHHHHHHHHHHHHhccCCeEEEEcC
Q 015771 93 ALNKDISKSEREHDLVIASYVLGEVPSLQDRITIVRQLWDLTRDVLVLVEP 143 (400)
Q Consensus 93 ~l~~~l~~~~~~~DLVias~~L~eL~~~~~r~~~i~~Lw~~~gG~LVlVE~ 143 (400)
++. .+ .++||+|++...++.+.. .....+++.+.+..|+.+++..+
T Consensus 103 d~~-~~---~~~~D~v~~~~p~~~~~~-~~~~~~l~~~~~~~g~~~~~~~~ 148 (200)
T 1ne2_A 103 DVS-EI---SGKYDTWIMNPPFGSVVK-HSDRAFIDKAFETSMWIYSIGNA 148 (200)
T ss_dssp CGG-GC---CCCEEEEEECCCC--------CHHHHHHHHHHEEEEEEEEEG
T ss_pred cHH-HC---CCCeeEEEECCCchhccC-chhHHHHHHHHHhcCcEEEEEcC
Confidence 122 12 258999999988888753 22345677777655444444433
|
| >4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.70 E-value=3.2e-08 Score=98.55 Aligned_cols=118 Identities=14% Similarity=0.098 Sum_probs=75.9
Q ss_pred HCCCCCCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCC--CCCceeechhhhHhhhhcccCC
Q 015771 25 RLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK--DLPLIHSYNSIQALNKDISKSE 102 (400)
Q Consensus 25 rlp~~~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~--~~~~~~~~~~~~~l~~~l~~~~ 102 (400)
.++...+.+|||+|||+|..+..++..+| ..+|++||.|+.|++.++..+.... +...+.. ...++... ...
T Consensus 217 ~l~~~~~~~VLDlGcG~G~~s~~la~~~p--~~~V~gvD~s~~al~~Ar~n~~~ngl~~~~~v~~--~~~D~~~~--~~~ 290 (375)
T 4dcm_A 217 HLPENLEGEIVDLGCGNGVIGLTLLDKNP--QAKVVFVDESPMAVASSRLNVETNMPEALDRCEF--MINNALSG--VEP 290 (375)
T ss_dssp TCCCSCCSEEEEETCTTCHHHHHHHHHCT--TCEEEEEESCHHHHHHHHHHHHHHCGGGGGGEEE--EECSTTTT--CCT
T ss_pred hCcccCCCeEEEEeCcchHHHHHHHHHCC--CCEEEEEECcHHHHHHHHHHHHHcCCCcCceEEE--Eechhhcc--CCC
Confidence 34444457999999999999999888775 3689999999999999998876432 1001110 01122222 235
Q ss_pred CcccEEeecccccCCCC--HHHHHHHHHHHHhc--cCCeEEEEcCCCCCch
Q 015771 103 REHDLVIASYVLGEVPS--LQDRITIVRQLWDL--TRDVLVLVEPGTPQGS 149 (400)
Q Consensus 103 ~~~DLVias~~L~eL~~--~~~r~~~i~~Lw~~--~gG~LVlVE~Gtp~Gf 149 (400)
++||+|++...++.... ......+++.+.+. +||.|+|+-+.. .+|
T Consensus 291 ~~fD~Ii~nppfh~~~~~~~~~~~~~l~~~~~~LkpgG~l~iv~n~~-~~~ 340 (375)
T 4dcm_A 291 FRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIVANRH-LDY 340 (375)
T ss_dssp TCEEEEEECCCC-------CCHHHHHHHHHHHHEEEEEEEEEEEETT-SCH
T ss_pred CCeeEEEECCCcccCcccCHHHHHHHHHHHHHhCCCCcEEEEEEECC-cCH
Confidence 68999999887764211 12233566666653 899999987644 344
|
| >3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.69 E-value=5.3e-08 Score=96.89 Aligned_cols=112 Identities=18% Similarity=0.187 Sum_probs=70.4
Q ss_pred HHHHHHCCCCCCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCC---CCceeechhhhHhhh
Q 015771 20 ESFARRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKD---LPLIHSYNSIQALNK 96 (400)
Q Consensus 20 ~el~~rlp~~~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~---~~~~~~~~~~~~l~~ 96 (400)
..+.+....+++.+|||+|||+|..+..+++. ...+|++||.| .|++.|+++++.... +.++.. ++.
T Consensus 53 ~~i~~~~~~~~~~~VLDlGcGtG~ls~~la~~---g~~~V~gvD~s-~~~~~a~~~~~~~~~~~~v~~~~~-----d~~- 122 (376)
T 3r0q_C 53 NAVFQNKHHFEGKTVLDVGTGSGILAIWSAQA---GARKVYAVEAT-KMADHARALVKANNLDHIVEVIEG-----SVE- 122 (376)
T ss_dssp HHHHTTTTTTTTCEEEEESCTTTHHHHHHHHT---TCSEEEEEESS-TTHHHHHHHHHHTTCTTTEEEEES-----CGG-
T ss_pred HHHHhccccCCCCEEEEeccCcCHHHHHHHhc---CCCEEEEEccH-HHHHHHHHHHHHcCCCCeEEEEEC-----chh-
Confidence 33444344566789999999999998887754 23489999999 999999998864321 122221 222
Q ss_pred hcccCCCcccEEeecccccCCCCHHHHHHHHHHHHh--ccCCeEEEEc
Q 015771 97 DISKSEREHDLVIASYVLGEVPSLQDRITIVRQLWD--LTRDVLVLVE 142 (400)
Q Consensus 97 ~l~~~~~~~DLVias~~L~eL~~~~~r~~~i~~Lw~--~~gG~LVlVE 142 (400)
.++.+ ++||+|++..+.+.+........++..+.+ ++||.|++.+
T Consensus 123 ~~~~~-~~~D~Iv~~~~~~~l~~e~~~~~~l~~~~~~LkpgG~li~~~ 169 (376)
T 3r0q_C 123 DISLP-EKVDVIISEWMGYFLLRESMFDSVISARDRWLKPTGVMYPSH 169 (376)
T ss_dssp GCCCS-SCEEEEEECCCBTTBTTTCTHHHHHHHHHHHEEEEEEEESSE
T ss_pred hcCcC-CcceEEEEcChhhcccchHHHHHHHHHHHhhCCCCeEEEEec
Confidence 22222 789999996655555322223334444332 3799887543
|
| >1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A* | Back alignment and structure |
|---|
Probab=98.69 E-value=6e-08 Score=96.01 Aligned_cols=110 Identities=14% Similarity=0.176 Sum_probs=77.0
Q ss_pred HHHHHHHCCCCC-CCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCCCCceeechhhhHhhhh
Q 015771 19 TESFARRLPGFS-PAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKD 97 (400)
Q Consensus 19 L~el~~rlp~~~-p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~~~~~~~~~~~~~l~~~ 97 (400)
...+...++.|. +.+|||+|||+|..+.++.+.++. .+++++|. +.|++.++.. .++.++.. ++...
T Consensus 197 ~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~~~--~~~~~~D~-~~~~~~a~~~----~~v~~~~~-----d~~~~ 264 (372)
T 1fp1_D 197 MKRMLEIYTGFEGISTLVDVGGGSGRNLELIISKYPL--IKGINFDL-PQVIENAPPL----SGIEHVGG-----DMFAS 264 (372)
T ss_dssp HHHHHHHCCTTTTCSEEEEETCTTSHHHHHHHHHCTT--CEEEEEEC-HHHHTTCCCC----TTEEEEEC-----CTTTC
T ss_pred HHHHHHHhhccCCCCEEEEeCCCCcHHHHHHHHHCCC--CeEEEeCh-HHHHHhhhhc----CCCEEEeC-----CcccC
Confidence 456666665454 479999999999999999988863 48899999 8998766541 22222221 22221
Q ss_pred cccCCCcccEEeecccccCCCCHHHHHHHHHHHHhc--cCCeEEEEcCCC
Q 015771 98 ISKSEREHDLVIASYVLGEVPSLQDRITIVRQLWDL--TRDVLVLVEPGT 145 (400)
Q Consensus 98 l~~~~~~~DLVias~~L~eL~~~~~r~~~i~~Lw~~--~gG~LVlVE~Gt 145 (400)
+ + .||+|+++++|++++ ......+++++.+. |||.|+|+|...
T Consensus 265 ~--~--~~D~v~~~~~lh~~~-d~~~~~~l~~~~~~L~pgG~l~i~e~~~ 309 (372)
T 1fp1_D 265 V--P--QGDAMILKAVCHNWS-DEKCIEFLSNCHKALSPNGKVIIVEFIL 309 (372)
T ss_dssp C--C--CEEEEEEESSGGGSC-HHHHHHHHHHHHHHEEEEEEEEEEEEEE
T ss_pred C--C--CCCEEEEecccccCC-HHHHHHHHHHHHHhcCCCCEEEEEEecc
Confidence 2 2 299999999999997 44455677777664 899999997643
|
| >3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A* | Back alignment and structure |
|---|
Probab=98.69 E-value=1.2e-07 Score=93.83 Aligned_cols=112 Identities=10% Similarity=0.236 Sum_probs=77.7
Q ss_pred HHHHHHHCCCCCC-CeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCCCCceeechhhhHhhhh
Q 015771 19 TESFARRLPGFSP-AKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKD 97 (400)
Q Consensus 19 L~el~~rlp~~~p-~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~~~~~~~~~~~~~l~~~ 97 (400)
...+...++.|.+ .+|||+|||+|..+.++++.+|. .+++++|. +.|++.++.. .++.++.. ++...
T Consensus 191 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~--~~~~~~D~-~~~~~~a~~~----~~v~~~~~-----d~~~~ 258 (368)
T 3reo_A 191 MKKILEMYNGFEGLTTIVDVGGGTGAVASMIVAKYPS--INAINFDL-PHVIQDAPAF----SGVEHLGG-----DMFDG 258 (368)
T ss_dssp HHHHHTTCCTTTTCSEEEEETCTTSHHHHHHHHHCTT--CEEEEEEC-HHHHTTCCCC----TTEEEEEC-----CTTTC
T ss_pred HHHHHHhcccccCCCEEEEeCCCcCHHHHHHHHhCCC--CEEEEEeh-HHHHHhhhhc----CCCEEEec-----CCCCC
Confidence 3455555554544 79999999999999999998874 47999999 8887765431 22222221 22222
Q ss_pred cccCCCcccEEeecccccCCCCHHHHHHHHHHHHhc--cCCeEEEEcCCCCC
Q 015771 98 ISKSEREHDLVIASYVLGEVPSLQDRITIVRQLWDL--TRDVLVLVEPGTPQ 147 (400)
Q Consensus 98 l~~~~~~~DLVias~~L~eL~~~~~r~~~i~~Lw~~--~gG~LVlVE~Gtp~ 147 (400)
+ +. . |+|++.++|++++ ..+...+++++.+. |||.|+|+|.-.+.
T Consensus 259 ~--p~-~-D~v~~~~vlh~~~-~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~ 305 (368)
T 3reo_A 259 V--PK-G-DAIFIKWICHDWS-DEHCLKLLKNCYAALPDHGKVIVAEYILPP 305 (368)
T ss_dssp C--CC-C-SEEEEESCGGGBC-HHHHHHHHHHHHHHSCTTCEEEEEECCCCS
T ss_pred C--CC-C-CEEEEechhhcCC-HHHHHHHHHHHHHHcCCCCEEEEEEeccCC
Confidence 2 22 2 9999999999987 45556677777653 89999999975443
|
| >3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A* | Back alignment and structure |
|---|
Probab=98.68 E-value=1.2e-07 Score=94.64 Aligned_cols=119 Identities=21% Similarity=0.207 Sum_probs=77.9
Q ss_pred HHHHHHHHC--CCCCCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCC-CCCceeechhhhHh
Q 015771 18 VTESFARRL--PGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK-DLPLIHSYNSIQAL 94 (400)
Q Consensus 18 vL~el~~rl--p~~~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~-~~~~~~~~~~~~~l 94 (400)
++..+...+ ....+.+|||+|||+|..+..++.. ..+|++||.|+.|++.++..+.... .+.++.. ++
T Consensus 219 ll~~l~~~l~~~~~~~~~VLDlGcG~G~~~~~la~~----g~~V~gvDis~~al~~A~~n~~~~~~~v~~~~~-----D~ 289 (381)
T 3dmg_A 219 LLEALQERLGPEGVRGRQVLDLGAGYGALTLPLARM----GAEVVGVEDDLASVLSLQKGLEANALKAQALHS-----DV 289 (381)
T ss_dssp HHHHHHHHHCTTTTTTCEEEEETCTTSTTHHHHHHT----TCEEEEEESBHHHHHHHHHHHHHTTCCCEEEEC-----ST
T ss_pred HHHHHHHhhcccCCCCCEEEEEeeeCCHHHHHHHHc----CCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEc-----ch
Confidence 444444433 2335579999999999988887753 3589999999999999999876432 1222221 22
Q ss_pred hhhcccCCCcccEEeecccccCCCC--HHHHHHHHHHHHhc--cCCeEEEEcCCCC
Q 015771 95 NKDISKSEREHDLVIASYVLGEVPS--LQDRITIVRQLWDL--TRDVLVLVEPGTP 146 (400)
Q Consensus 95 ~~~l~~~~~~~DLVias~~L~eL~~--~~~r~~~i~~Lw~~--~gG~LVlVE~Gtp 146 (400)
.. .....++||+|+++..++.... ......++.++.+. +||.|+|+.+...
T Consensus 290 ~~-~~~~~~~fD~Ii~npp~~~~~~~~~~~~~~~l~~~~~~LkpGG~l~iv~n~~l 344 (381)
T 3dmg_A 290 DE-ALTEEARFDIIVTNPPFHVGGAVILDVAQAFVNVAAARLRPGGVFFLVSNPFL 344 (381)
T ss_dssp TT-TSCTTCCEEEEEECCCCCTTCSSCCHHHHHHHHHHHHHEEEEEEEEEEECTTS
T ss_pred hh-ccccCCCeEEEEECCchhhcccccHHHHHHHHHHHHHhcCcCcEEEEEEcCCC
Confidence 21 1223468999999988776211 33445566665553 8999999866443
|
| >2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=98.68 E-value=6.1e-08 Score=87.69 Aligned_cols=102 Identities=15% Similarity=0.115 Sum_probs=65.6
Q ss_pred CCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCC--CCCceeechhhhHhhhhcccCCCcccE
Q 015771 30 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK--DLPLIHSYNSIQALNKDISKSEREHDL 107 (400)
Q Consensus 30 ~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~--~~~~~~~~~~~~~l~~~l~~~~~~~DL 107 (400)
.+.+|||+|||+|..+..++.. ...+|+++|.|+.|++.|+..++... ++.++.. +....++...++||+
T Consensus 54 ~~~~vLDlgcG~G~~~~~l~~~---~~~~V~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~-----D~~~~~~~~~~~fD~ 125 (202)
T 2fpo_A 54 VDAQCLDCFAGSGALGLEALSR---YAAGATLIEMDRAVSQQLIKNLATLKAGNARVVNS-----NAMSFLAQKGTPHNI 125 (202)
T ss_dssp TTCEEEETTCTTCHHHHHHHHT---TCSEEEEECSCHHHHHHHHHHHHHTTCCSEEEECS-----CHHHHHSSCCCCEEE
T ss_pred CCCeEEEeCCCcCHHHHHHHhc---CCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEEC-----CHHHHHhhcCCCCCE
Confidence 3479999999999998865542 23489999999999999998876432 2222221 222222334468999
Q ss_pred EeecccccCCCCHHHHHHHHHHHHh----ccCCeEEEEcC
Q 015771 108 VIASYVLGEVPSLQDRITIVRQLWD----LTRDVLVLVEP 143 (400)
Q Consensus 108 Vias~~L~eL~~~~~r~~~i~~Lw~----~~gG~LVlVE~ 143 (400)
|++...++ .... ..+++.+.+ ++||.|++...
T Consensus 126 V~~~~p~~-~~~~---~~~l~~l~~~~~L~pgG~l~i~~~ 161 (202)
T 2fpo_A 126 VFVDPPFR-RGLL---EETINLLEDNGWLADEALIYVESE 161 (202)
T ss_dssp EEECCSSS-TTTH---HHHHHHHHHTTCEEEEEEEEEEEE
T ss_pred EEECCCCC-CCcH---HHHHHHHHhcCccCCCcEEEEEEC
Confidence 99876644 2222 234444433 37898887643
|
| >2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.67 E-value=4e-08 Score=91.34 Aligned_cols=111 Identities=14% Similarity=0.072 Sum_probs=71.7
Q ss_pred HHHHCCCCCCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCC---CCCCceeechhhhHhhhhc
Q 015771 22 FARRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGP---KDLPLIHSYNSIQALNKDI 98 (400)
Q Consensus 22 l~~rlp~~~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~---~~~~~~~~~~~~~~l~~~l 98 (400)
+...+....+.+|||+|||+|..+.+++..++ ...+++++|.|+.|++.|+..++.. .++.+... ++.. .
T Consensus 88 ~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~-~~~~v~~~D~~~~~~~~a~~~~~~~~g~~~v~~~~~-----d~~~-~ 160 (258)
T 2pwy_A 88 MVTLLDLAPGMRVLEAGTGSGGLTLFLARAVG-EKGLVESYEARPHHLAQAERNVRAFWQVENVRFHLG-----KLEE-A 160 (258)
T ss_dssp HHHHTTCCTTCEEEEECCTTSHHHHHHHHHHC-TTSEEEEEESCHHHHHHHHHHHHHHCCCCCEEEEES-----CGGG-C
T ss_pred HHHHcCCCCCCEEEEECCCcCHHHHHHHHHhC-CCCEEEEEeCCHHHHHHHHHHHHHhcCCCCEEEEEC-----chhh-c
Confidence 33444333457999999999999988887643 2458999999999999999887532 22222221 2222 1
Q ss_pred ccCCCcccEEeecccccCCCCHHHHHHHHHHHHhccCCeEEEEcCCC
Q 015771 99 SKSEREHDLVIASYVLGEVPSLQDRITIVRQLWDLTRDVLVLVEPGT 145 (400)
Q Consensus 99 ~~~~~~~DLVias~~L~eL~~~~~r~~~i~~Lw~~~gG~LVlVE~Gt 145 (400)
+...+.||+|++. +++.......+.++++ +||.|+++.+..
T Consensus 161 ~~~~~~~D~v~~~-----~~~~~~~l~~~~~~L~-~gG~l~~~~~~~ 201 (258)
T 2pwy_A 161 ELEEAAYDGVALD-----LMEPWKVLEKAALALK-PDRFLVAYLPNI 201 (258)
T ss_dssp CCCTTCEEEEEEE-----SSCGGGGHHHHHHHEE-EEEEEEEEESCH
T ss_pred CCCCCCcCEEEEC-----CcCHHHHHHHHHHhCC-CCCEEEEEeCCH
Confidence 2234689999983 3344333334444443 799999998754
|
| >1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A* | Back alignment and structure |
|---|
Probab=98.67 E-value=9.5e-08 Score=89.46 Aligned_cols=106 Identities=11% Similarity=0.129 Sum_probs=66.8
Q ss_pred CCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCC---CCceeechhhhHhhhhccc---CCC
Q 015771 30 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKD---LPLIHSYNSIQALNKDISK---SER 103 (400)
Q Consensus 30 ~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~---~~~~~~~~~~~~l~~~l~~---~~~ 103 (400)
.+.+|||+|||+|..+..++..++. ..+++++|.|+.|++.|++.++.... +.++... ....+. .+.. ..+
T Consensus 79 ~~~~VLeiG~G~G~~~~~la~~~~~-~~~v~~iD~s~~~~~~a~~~~~~~g~~~~i~~~~gd-a~~~l~-~l~~~~~~~~ 155 (247)
T 1sui_A 79 NAKNTMEIGVYTGYSLLATALAIPE-DGKILAMDINKENYELGLPVIKKAGVDHKIDFREGP-ALPVLD-EMIKDEKNHG 155 (247)
T ss_dssp TCCEEEEECCGGGHHHHHHHHHSCT-TCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESC-HHHHHH-HHHHSGGGTT
T ss_pred CcCEEEEeCCCcCHHHHHHHHhCCC-CCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECC-HHHHHH-HHHhccCCCC
Confidence 5689999999999999888888763 46899999999999999998865321 1122211 011111 1100 146
Q ss_pred cccEEeecccccCCCCHHHHHHHHHHHHhccCCeEEEEc
Q 015771 104 EHDLVIASYVLGEVPSLQDRITIVRQLWDLTRDVLVLVE 142 (400)
Q Consensus 104 ~~DLVias~~L~eL~~~~~r~~~i~~Lw~~~gG~LVlVE 142 (400)
+||+|++.... .....-...+.+++ ++||.||+-+
T Consensus 156 ~fD~V~~d~~~---~~~~~~l~~~~~~L-kpGG~lv~d~ 190 (247)
T 1sui_A 156 SYDFIFVDADK---DNYLNYHKRLIDLV-KVGGVIGYDN 190 (247)
T ss_dssp CBSEEEECSCS---TTHHHHHHHHHHHB-CTTCCEEEEC
T ss_pred CEEEEEEcCch---HHHHHHHHHHHHhC-CCCeEEEEec
Confidence 89999987542 22222233333343 2799998643
|
| >2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.67 E-value=7.6e-08 Score=88.51 Aligned_cols=100 Identities=11% Similarity=0.143 Sum_probs=68.4
Q ss_pred CCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCC---CCceeechhhhHhhhhcccC--CCc
Q 015771 30 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKD---LPLIHSYNSIQALNKDISKS--ERE 104 (400)
Q Consensus 30 ~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~---~~~~~~~~~~~~l~~~l~~~--~~~ 104 (400)
.+.+|||+|||+|..+..++..++ ..+|+++|.|+.+++.|+..+..... +.++.. +....++.. .++
T Consensus 54 ~~~~vLdiG~G~G~~~~~la~~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~-----d~~~~~~~~~~~~~ 126 (233)
T 2gpy_A 54 APARILEIGTAIGYSAIRMAQALP--EATIVSIERDERRYEEAHKHVKALGLESRIELLFG-----DALQLGEKLELYPL 126 (233)
T ss_dssp CCSEEEEECCTTSHHHHHHHHHCT--TCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECS-----CGGGSHHHHTTSCC
T ss_pred CCCEEEEecCCCcHHHHHHHHHCC--CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEC-----CHHHHHHhcccCCC
Confidence 357999999999999988888875 36899999999999999998764321 222211 111111111 468
Q ss_pred ccEEeecccccCCCCHHHHHHHHHHHHhc--cCCeEEEEc
Q 015771 105 HDLVIASYVLGEVPSLQDRITIVRQLWDL--TRDVLVLVE 142 (400)
Q Consensus 105 ~DLVias~~L~eL~~~~~r~~~i~~Lw~~--~gG~LVlVE 142 (400)
||+|++...+.. ...+++.+.+. +||.||+.+
T Consensus 127 fD~I~~~~~~~~------~~~~l~~~~~~L~pgG~lv~~~ 160 (233)
T 2gpy_A 127 FDVLFIDAAKGQ------YRRFFDMYSPMVRPGGLILSDN 160 (233)
T ss_dssp EEEEEEEGGGSC------HHHHHHHHGGGEEEEEEEEEET
T ss_pred ccEEEECCCHHH------HHHHHHHHHHHcCCCeEEEEEc
Confidence 999999877542 23455555543 799998864
|
| >1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A | Back alignment and structure |
|---|
Probab=98.67 E-value=8.9e-08 Score=87.63 Aligned_cols=101 Identities=11% Similarity=0.072 Sum_probs=66.0
Q ss_pred CCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCCCCceeechhhhHhhh--hcccCCCcccE
Q 015771 30 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNK--DISKSEREHDL 107 (400)
Q Consensus 30 ~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~~~~~~~~~~~~~l~~--~l~~~~~~~DL 107 (400)
.+.+|||+|||+|..+..+++.++. ..+|+++|.|+.|++.++..++...++.++... +.. .+....++||+
T Consensus 73 ~~~~vLDlG~G~G~~~~~la~~~~~-~~~v~~vD~s~~~~~~~~~~~~~~~~v~~~~~d-----~~~~~~~~~~~~~~D~ 146 (227)
T 1g8a_A 73 PGKSVLYLGIASGTTASHVSDIVGW-EGKIFGIEFSPRVLRELVPIVEERRNIVPILGD-----ATKPEEYRALVPKVDV 146 (227)
T ss_dssp TTCEEEEETTTSTTHHHHHHHHHCT-TSEEEEEESCHHHHHHHHHHHSSCTTEEEEECC-----TTCGGGGTTTCCCEEE
T ss_pred CCCEEEEEeccCCHHHHHHHHHhCC-CeEEEEEECCHHHHHHHHHHHhccCCCEEEEcc-----CCCcchhhcccCCceE
Confidence 3469999999999999988877642 358999999999999988887654333332221 211 01112357999
Q ss_pred EeecccccCCCCHHHHHHHHHHHHh--ccCCeEEEE
Q 015771 108 VIASYVLGEVPSLQDRITIVRQLWD--LTRDVLVLV 141 (400)
Q Consensus 108 Vias~~L~eL~~~~~r~~~i~~Lw~--~~gG~LVlV 141 (400)
|++... .......++.++.+ ++||.|+++
T Consensus 147 v~~~~~-----~~~~~~~~l~~~~~~LkpgG~l~~~ 177 (227)
T 1g8a_A 147 IFEDVA-----QPTQAKILIDNAEVYLKRGGYGMIA 177 (227)
T ss_dssp EEECCC-----STTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred EEECCC-----CHhHHHHHHHHHHHhcCCCCEEEEE
Confidence 997654 12222333555544 289999886
|
| >3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A* | Back alignment and structure |
|---|
Probab=98.67 E-value=5.6e-08 Score=89.39 Aligned_cols=108 Identities=13% Similarity=0.111 Sum_probs=70.4
Q ss_pred CCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCC--CCCCceeechhhhH-hhhhcccCCCccc
Q 015771 30 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGP--KDLPLIHSYNSIQA-LNKDISKSEREHD 106 (400)
Q Consensus 30 ~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~--~~~~~~~~~~~~~~-l~~~l~~~~~~~D 106 (400)
...+|||+|||+|..+..++...+. ..|++||.|+.|++.|+..+... .++.++... ..+ +... ...++||
T Consensus 34 ~~~~vLDiGcG~G~~~~~lA~~~p~--~~v~giD~s~~~l~~a~~~~~~~~l~nv~~~~~D--a~~~l~~~--~~~~~~d 107 (218)
T 3dxy_A 34 EAPVTLEIGFGMGASLVAMAKDRPE--QDFLGIEVHSPGVGACLASAHEEGLSNLRVMCHD--AVEVLHKM--IPDNSLR 107 (218)
T ss_dssp CCCEEEEESCTTCHHHHHHHHHCTT--SEEEEECSCHHHHHHHHHHHHHTTCSSEEEECSC--HHHHHHHH--SCTTCEE
T ss_pred CCCeEEEEeeeChHHHHHHHHHCCC--CeEEEEEecHHHHHHHHHHHHHhCCCcEEEEECC--HHHHHHHH--cCCCChh
Confidence 3469999999999999998887763 58999999999999998887543 233332221 111 1111 2457899
Q ss_pred EEeecccccCCCCHHH-H----HHHHHHHHh--ccCCeEEEEcC
Q 015771 107 LVIASYVLGEVPSLQD-R----ITIVRQLWD--LTRDVLVLVEP 143 (400)
Q Consensus 107 LVias~~L~eL~~~~~-r----~~~i~~Lw~--~~gG~LVlVE~ 143 (400)
.|++.+...+...... + ..+++.+.+ +|||.|+++..
T Consensus 108 ~v~~~~~~p~~~~~~~~rr~~~~~~l~~~~r~LkpGG~l~i~td 151 (218)
T 3dxy_A 108 MVQLFFPDPWHKARHNKRRIVQVPFAELVKSKLQLGGVFHMATD 151 (218)
T ss_dssp EEEEESCCCCCSGGGGGGSSCSHHHHHHHHHHEEEEEEEEEEES
T ss_pred eEEEeCCCCccchhhhhhhhhhHHHHHHHHHHcCCCcEEEEEeC
Confidence 9998865443321111 0 135555544 28999998854
|
| >3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=98.66 E-value=5.1e-08 Score=90.08 Aligned_cols=98 Identities=9% Similarity=0.166 Sum_probs=66.1
Q ss_pred CCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCC---CCCceeechhhhHhhhhcc-cCCCcc
Q 015771 30 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK---DLPLIHSYNSIQALNKDIS-KSEREH 105 (400)
Q Consensus 30 ~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~---~~~~~~~~~~~~~l~~~l~-~~~~~~ 105 (400)
.+.+|||+|||+|..+..++..++ ..+|+++|.|+.|++.|+..++... ++.++.. +....++ ...++|
T Consensus 71 ~~~~vLDiG~G~G~~~~~la~~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~-----d~~~~~~~~~~~~f 143 (232)
T 3ntv_A 71 NVKNILEIGTAIGYSSMQFASISD--DIHVTTIERNETMIQYAKQNLATYHFENQVRIIEG-----NALEQFENVNDKVY 143 (232)
T ss_dssp TCCEEEEECCSSSHHHHHHHTTCT--TCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEES-----CGGGCHHHHTTSCE
T ss_pred CCCEEEEEeCchhHHHHHHHHhCC--CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEC-----CHHHHHHhhccCCc
Confidence 457999999999999988887554 4689999999999999999886432 2222221 1222222 225689
Q ss_pred cEEeecccccCCCCHHHHHHHHHHHHhc--cCCeEEE
Q 015771 106 DLVIASYVLGEVPSLQDRITIVRQLWDL--TRDVLVL 140 (400)
Q Consensus 106 DLVias~~L~eL~~~~~r~~~i~~Lw~~--~gG~LVl 140 (400)
|+|++...... ...+++.+.+. +||.||+
T Consensus 144 D~V~~~~~~~~------~~~~l~~~~~~LkpgG~lv~ 174 (232)
T 3ntv_A 144 DMIFIDAAKAQ------SKKFFEIYTPLLKHQGLVIT 174 (232)
T ss_dssp EEEEEETTSSS------HHHHHHHHGGGEEEEEEEEE
T ss_pred cEEEEcCcHHH------HHHHHHHHHHhcCCCeEEEE
Confidence 99997654222 22355555543 7998877
|
| >3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A* | Back alignment and structure |
|---|
Probab=98.66 E-value=2.3e-07 Score=84.54 Aligned_cols=105 Identities=12% Similarity=0.109 Sum_probs=67.2
Q ss_pred CCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCC---CCceeechhhhHhhhhcccC-CCcc
Q 015771 30 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKD---LPLIHSYNSIQALNKDISKS-EREH 105 (400)
Q Consensus 30 ~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~---~~~~~~~~~~~~l~~~l~~~-~~~~ 105 (400)
.+.+|||+|||+|..+..++..++. ..+|+++|.|+.|++.|+..+..... +.++.... ...+. .+... .++|
T Consensus 58 ~~~~vLdiG~G~G~~~~~la~~~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~-~~~~~-~~~~~~~~~f 134 (223)
T 3duw_A 58 GARNILEIGTLGGYSTIWLARGLSS-GGRVVTLEASEKHADIARSNIERANLNDRVEVRTGLA-LDSLQ-QIENEKYEPF 134 (223)
T ss_dssp TCSEEEEECCTTSHHHHHHHTTCCS-SCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCH-HHHHH-HHHHTTCCCC
T ss_pred CCCEEEEecCCccHHHHHHHHhCCC-CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCH-HHHHH-HHHhcCCCCc
Confidence 4579999999999999998877752 46999999999999999988864321 22222210 01111 11111 2579
Q ss_pred cEEeecccccCCCCHHHHHHHHHHHHhc--cCCeEEEEcC
Q 015771 106 DLVIASYVLGEVPSLQDRITIVRQLWDL--TRDVLVLVEP 143 (400)
Q Consensus 106 DLVias~~L~eL~~~~~r~~~i~~Lw~~--~gG~LVlVE~ 143 (400)
|+|++..... ....++..+.+. +||.||+-+.
T Consensus 135 D~v~~d~~~~------~~~~~l~~~~~~L~pgG~lv~~~~ 168 (223)
T 3duw_A 135 DFIFIDADKQ------NNPAYFEWALKLSRPGTVIIGDNV 168 (223)
T ss_dssp SEEEECSCGG------GHHHHHHHHHHTCCTTCEEEEESC
T ss_pred CEEEEcCCcH------HHHHHHHHHHHhcCCCcEEEEeCC
Confidence 9999875522 223455555543 7997776543
|
| >1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53 | Back alignment and structure |
|---|
Probab=98.66 E-value=9.5e-08 Score=86.80 Aligned_cols=105 Identities=9% Similarity=0.021 Sum_probs=68.6
Q ss_pred CCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCC--CCCCceeechhhhHhhhhcc--cCCCccc
Q 015771 31 PAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGP--KDLPLIHSYNSIQALNKDIS--KSEREHD 106 (400)
Q Consensus 31 p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~--~~~~~~~~~~~~~~l~~~l~--~~~~~~D 106 (400)
+.+|||+|||+|..+..++...+ ..++++||.|+.|++.|+..+... .++.++... +.. ++ ...++||
T Consensus 42 ~~~vLDiGcG~G~~~~~la~~~p--~~~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d-----~~~-~~~~~~~~~~D 113 (214)
T 1yzh_A 42 NPIHVEVGSGKGAFVSGMAKQNP--DINYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVD-----GSD-LTDYFEDGEID 113 (214)
T ss_dssp CCEEEEESCTTSHHHHHHHHHCT--TSEEEEEESCHHHHHHHHHHHHHHCCSSEEEEECC-----SSC-GGGTSCTTCCS
T ss_pred CCeEEEEccCcCHHHHHHHHHCC--CCCEEEEEcCHHHHHHHHHHHHHcCCCCEEEEeCC-----HHH-HHhhcCCCCCC
Confidence 46899999999999999888776 358999999999999998877532 222222221 111 22 2356799
Q ss_pred EEeecccccCCCCHH-H----HHHHHHHHHh--ccCCeEEEEcC
Q 015771 107 LVIASYVLGEVPSLQ-D----RITIVRQLWD--LTRDVLVLVEP 143 (400)
Q Consensus 107 LVias~~L~eL~~~~-~----r~~~i~~Lw~--~~gG~LVlVE~ 143 (400)
+|++.+...+..... . ...++..+.+ ++||.|++...
T Consensus 114 ~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 157 (214)
T 1yzh_A 114 RLYLNFSDPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKTD 157 (214)
T ss_dssp EEEEESCCCCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEEES
T ss_pred EEEEECCCCccccchhhhccCCHHHHHHHHHHcCCCcEEEEEeC
Confidence 999987644322110 0 1234444444 37999988643
|
| >2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A* | Back alignment and structure |
|---|
Probab=98.65 E-value=3.9e-07 Score=86.25 Aligned_cols=84 Identities=21% Similarity=0.324 Sum_probs=57.2
Q ss_pred HHHHHHHCCCCCCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCC--CCCceeechhhhHhhh
Q 015771 19 TESFARRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK--DLPLIHSYNSIQALNK 96 (400)
Q Consensus 19 L~el~~rlp~~~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~--~~~~~~~~~~~~~l~~ 96 (400)
+..+...++ ..+.+|||+|||+|..+.+++..++ ..+++++|.|+.|++.++..+.... ++.++.. ++..
T Consensus 99 ~~~~l~~~~-~~~~~vLDlG~GsG~~~~~la~~~~--~~~v~~vD~s~~~l~~a~~n~~~~~~~~v~~~~~-----d~~~ 170 (276)
T 2b3t_A 99 VEQALARLP-EQPCRILDLGTGTGAIALALASERP--DCEIIAVDRMPDAVSLAQRNAQHLAIKNIHILQS-----DWFS 170 (276)
T ss_dssp HHHHHHHSC-SSCCEEEEETCTTSHHHHHHHHHCT--TSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECC-----STTG
T ss_pred HHHHHHhcc-cCCCEEEEecCCccHHHHHHHHhCC--CCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEc-----chhh
Confidence 334444443 3457999999999999999888775 3589999999999999998875321 2222221 2222
Q ss_pred hcccCCCcccEEeecc
Q 015771 97 DISKSEREHDLVIASY 112 (400)
Q Consensus 97 ~l~~~~~~~DLVias~ 112 (400)
.+ ..++||+|++..
T Consensus 171 ~~--~~~~fD~Iv~np 184 (276)
T 2b3t_A 171 AL--AGQQFAMIVSNP 184 (276)
T ss_dssp GG--TTCCEEEEEECC
T ss_pred hc--ccCCccEEEECC
Confidence 12 246899999973
|
| >1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20 | Back alignment and structure |
|---|
Probab=98.65 E-value=3.6e-08 Score=91.39 Aligned_cols=101 Identities=17% Similarity=0.252 Sum_probs=65.9
Q ss_pred CCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCC--CCCCceeechhhhHhhhhcccCCCcccE
Q 015771 30 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGP--KDLPLIHSYNSIQALNKDISKSEREHDL 107 (400)
Q Consensus 30 ~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~--~~~~~~~~~~~~~~l~~~l~~~~~~~DL 107 (400)
.+.+|||+|||+|..+..++...+ ..+|++||.|+.|++.++..++.. .++.++... ..++... +...++||+
T Consensus 70 ~~~~vLDiG~G~G~~~~~la~~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d--~~~~~~~-~~~~~~fD~ 144 (240)
T 1xdz_A 70 QVNTICDVGAGAGFPSLPIKICFP--HLHVTIVDSLNKRITFLEKLSEALQLENTTFCHDR--AETFGQR-KDVRESYDI 144 (240)
T ss_dssp GCCEEEEECSSSCTTHHHHHHHCT--TCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEESC--HHHHTTC-TTTTTCEEE
T ss_pred CCCEEEEecCCCCHHHHHHHHhCC--CCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEecc--HHHhccc-ccccCCccE
Confidence 457999999999988877776654 358999999999999999877543 223233221 1111100 011468999
Q ss_pred EeecccccCCCCHHHHHHHHHHHHhc--cCCeEEEEc
Q 015771 108 VIASYVLGEVPSLQDRITIVRQLWDL--TRDVLVLVE 142 (400)
Q Consensus 108 Vias~~L~eL~~~~~r~~~i~~Lw~~--~gG~LVlVE 142 (400)
|++..+ .+. ..+++.+.+. +||.++++.
T Consensus 145 V~~~~~----~~~---~~~l~~~~~~LkpgG~l~~~~ 174 (240)
T 1xdz_A 145 VTARAV----ARL---SVLSELCLPLVKKNGLFVALK 174 (240)
T ss_dssp EEEECC----SCH---HHHHHHHGGGEEEEEEEEEEE
T ss_pred EEEecc----CCH---HHHHHHHHHhcCCCCEEEEEe
Confidence 998763 333 3455555443 799998874
|
| >1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=98.65 E-value=6e-08 Score=91.52 Aligned_cols=112 Identities=18% Similarity=0.175 Sum_probs=71.3
Q ss_pred HHHHHCCCCCCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCC-----CCCCceeechhhhHhh
Q 015771 21 SFARRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGP-----KDLPLIHSYNSIQALN 95 (400)
Q Consensus 21 el~~rlp~~~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~-----~~~~~~~~~~~~~~l~ 95 (400)
.+...+....+.+|||+|||+|..+.+++..++ ...+++++|.|+.|++.|+..+... .++.++.. ++.
T Consensus 90 ~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~g~~~~~v~~~~~-----d~~ 163 (280)
T 1i9g_A 90 QIVHEGDIFPGARVLEAGAGSGALTLSLLRAVG-PAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVS-----DLA 163 (280)
T ss_dssp HHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHC-TTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECS-----CGG
T ss_pred HHHHHcCCCCCCEEEEEcccccHHHHHHHHHhC-CCCEEEEEeCCHHHHHHHHHHHHHhcCCCCCcEEEEEC-----chH
Confidence 333344333447999999999999988887543 2358999999999999999887532 12222211 222
Q ss_pred hhcccCCCcccEEeecccccCCCCHHHHHHHHHHHHhccCCeEEEEcCCC
Q 015771 96 KDISKSEREHDLVIASYVLGEVPSLQDRITIVRQLWDLTRDVLVLVEPGT 145 (400)
Q Consensus 96 ~~l~~~~~~~DLVias~~L~eL~~~~~r~~~i~~Lw~~~gG~LVlVE~Gt 145 (400)
. .+...+.||+|++. +++.......+.++++ +||.|+++.+..
T Consensus 164 ~-~~~~~~~~D~v~~~-----~~~~~~~l~~~~~~L~-pgG~l~~~~~~~ 206 (280)
T 1i9g_A 164 D-SELPDGSVDRAVLD-----MLAPWEVLDAVSRLLV-AGGVLMVYVATV 206 (280)
T ss_dssp G-CCCCTTCEEEEEEE-----SSCGGGGHHHHHHHEE-EEEEEEEEESSH
T ss_pred h-cCCCCCceeEEEEC-----CcCHHHHHHHHHHhCC-CCCEEEEEeCCH
Confidence 1 12235689999983 2334333333444443 799999998743
|
| >2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=98.65 E-value=3.2e-08 Score=87.20 Aligned_cols=109 Identities=12% Similarity=0.115 Sum_probs=66.3
Q ss_pred CCCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCC---CCCceeechhhhHhhhhcccCCCcc
Q 015771 29 FSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK---DLPLIHSYNSIQALNKDISKSEREH 105 (400)
Q Consensus 29 ~~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~---~~~~~~~~~~~~~l~~~l~~~~~~~ 105 (400)
..+.+|||+|||+|..+..++. . ...+|+++|.|+.|++.|+..+.... ++.++... ..+....++...++|
T Consensus 43 ~~~~~vLD~GcG~G~~~~~~~~-~--~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d--~~~~~~~~~~~~~~f 117 (187)
T 2fhp_A 43 FDGGMALDLYSGSGGLAIEAVS-R--GMDKSICIEKNFAALKVIKENIAITKEPEKFEVRKMD--ANRALEQFYEEKLQF 117 (187)
T ss_dssp CSSCEEEETTCTTCHHHHHHHH-T--TCSEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESC--HHHHHHHHHHTTCCE
T ss_pred cCCCCEEEeCCccCHHHHHHHH-c--CCCEEEEEECCHHHHHHHHHHHHHhCCCcceEEEECc--HHHHHHHHHhcCCCC
Confidence 3457999999999999887665 2 23689999999999999998875422 12222221 111111111124689
Q ss_pred cEEeecccccCCCCHHHHHHHHHHHHh--ccCCeEEEEcCC
Q 015771 106 DLVIASYVLGEVPSLQDRITIVRQLWD--LTRDVLVLVEPG 144 (400)
Q Consensus 106 DLVias~~L~eL~~~~~r~~~i~~Lw~--~~gG~LVlVE~G 144 (400)
|+|++...++.. ........+.. .+ ++||.+++..+.
T Consensus 118 D~i~~~~~~~~~-~~~~~~~~l~~-~~~L~~gG~l~~~~~~ 156 (187)
T 2fhp_A 118 DLVLLDPPYAKQ-EIVSQLEKMLE-RQLLTNEAVIVCETDK 156 (187)
T ss_dssp EEEEECCCGGGC-CHHHHHHHHHH-TTCEEEEEEEEEEEET
T ss_pred CEEEECCCCCch-hHHHHHHHHHH-hcccCCCCEEEEEeCC
Confidence 999998765422 23333333311 22 279998877553
|
| >2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=98.65 E-value=9.9e-08 Score=86.24 Aligned_cols=102 Identities=15% Similarity=0.126 Sum_probs=66.1
Q ss_pred CCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCC----CCCceeechhhhHhhhhccc-CCCc
Q 015771 30 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK----DLPLIHSYNSIQALNKDISK-SERE 104 (400)
Q Consensus 30 ~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~----~~~~~~~~~~~~~l~~~l~~-~~~~ 104 (400)
.+.+|||+|||+|..+..++.. ...+|++||.|+.|++.|+..++... ++.++.. +....++. ..++
T Consensus 53 ~~~~vLDlGcGtG~~~~~~~~~---~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~-----d~~~~~~~~~~~~ 124 (201)
T 2ift_A 53 HQSECLDGFAGSGSLGFEALSR---QAKKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQ-----SSLDFLKQPQNQP 124 (201)
T ss_dssp TTCEEEETTCTTCHHHHHHHHT---TCSEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECS-----CHHHHTTSCCSSC
T ss_pred CCCeEEEcCCccCHHHHHHHHc---cCCEEEEEECCHHHHHHHHHHHHHhCCCccceEEEEC-----CHHHHHHhhccCC
Confidence 3479999999999988765432 23589999999999999999876432 2222221 22221221 2467
Q ss_pred -ccEEeecccccCCCCHHHHHHHHHHHHh----ccCCeEEEEcC
Q 015771 105 -HDLVIASYVLGEVPSLQDRITIVRQLWD----LTRDVLVLVEP 143 (400)
Q Consensus 105 -~DLVias~~L~eL~~~~~r~~~i~~Lw~----~~gG~LVlVE~ 143 (400)
||+|++...++ .. ....++..+.+ ++||.|++...
T Consensus 125 ~fD~I~~~~~~~-~~---~~~~~l~~~~~~~~LkpgG~l~i~~~ 164 (201)
T 2ift_A 125 HFDVVFLDPPFH-FN---LAEQAISLLCENNWLKPNALIYVETE 164 (201)
T ss_dssp CEEEEEECCCSS-SC---HHHHHHHHHHHTTCEEEEEEEEEEEE
T ss_pred CCCEEEECCCCC-Cc---cHHHHHHHHHhcCccCCCcEEEEEEC
Confidence 99999987754 22 23345555532 37999887654
|
| >1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A* | Back alignment and structure |
|---|
Probab=98.64 E-value=8.9e-08 Score=88.37 Aligned_cols=99 Identities=13% Similarity=0.182 Sum_probs=69.0
Q ss_pred CCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCC--CCCceeechhhhHhhhhcccCCCcccE
Q 015771 30 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK--DLPLIHSYNSIQALNKDISKSEREHDL 107 (400)
Q Consensus 30 ~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~--~~~~~~~~~~~~~l~~~l~~~~~~~DL 107 (400)
.+.+|||+|||+|..+..++...+ .+|+++|.|+.|++.|+..+.... ++.++.. +....++ ...+||+
T Consensus 91 ~~~~vLdiG~G~G~~~~~la~~~~---~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~-----d~~~~~~-~~~~fD~ 161 (235)
T 1jg1_A 91 PGMNILEVGTGSGWNAALISEIVK---TDVYTIERIPELVEFAKRNLERAGVKNVHVILG-----DGSKGFP-PKAPYDV 161 (235)
T ss_dssp TTCCEEEECCTTSHHHHHHHHHHC---SCEEEEESCHHHHHHHHHHHHHTTCCSEEEEES-----CGGGCCG-GGCCEEE
T ss_pred CCCEEEEEeCCcCHHHHHHHHHhC---CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEC-----CcccCCC-CCCCccE
Confidence 447999999999999988887764 579999999999999998875432 2222211 1211221 2235999
Q ss_pred EeecccccCCCCHHHHHHHHHHHHhccCCeEEEEcCC
Q 015771 108 VIASYVLGEVPSLQDRITIVRQLWDLTRDVLVLVEPG 144 (400)
Q Consensus 108 Vias~~L~eL~~~~~r~~~i~~Lw~~~gG~LVlVE~G 144 (400)
|++..++.+++. .+.+++ ++||.|++.-+.
T Consensus 162 Ii~~~~~~~~~~------~~~~~L-~pgG~lvi~~~~ 191 (235)
T 1jg1_A 162 IIVTAGAPKIPE------PLIEQL-KIGGKLIIPVGS 191 (235)
T ss_dssp EEECSBBSSCCH------HHHHTE-EEEEEEEEEECS
T ss_pred EEECCcHHHHHH------HHHHhc-CCCcEEEEEEec
Confidence 999999998862 123333 379999887664
|
| >3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca} | Back alignment and structure |
|---|
Probab=98.64 E-value=7.7e-08 Score=87.06 Aligned_cols=100 Identities=13% Similarity=0.197 Sum_probs=66.1
Q ss_pred CCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCC---CCceeechhhhHhhhhcccCCCccc
Q 015771 30 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKD---LPLIHSYNSIQALNKDISKSEREHD 106 (400)
Q Consensus 30 ~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~---~~~~~~~~~~~~l~~~l~~~~~~~D 106 (400)
.+.+|||+|||+|..+..++..++. ..+|+++|.|+.|++.|++.++.... +.++.. +....++...+ ||
T Consensus 56 ~~~~vLdiG~G~G~~~~~la~~~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~-----d~~~~~~~~~~-fD 128 (210)
T 3c3p_A 56 QPQLVVVPGDGLGCASWWFARAISI-SSRVVMIDPDRDNVEHARRMLHDNGLIDRVELQVG-----DPLGIAAGQRD-ID 128 (210)
T ss_dssp CCSEEEEESCGGGHHHHHHHTTSCT-TCEEEEEESCHHHHHHHHHHHHHHSGGGGEEEEES-----CHHHHHTTCCS-EE
T ss_pred CCCEEEEEcCCccHHHHHHHHhCCC-CCEEEEEECCHHHHHHHHHHHHHCCCCceEEEEEe-----cHHHHhccCCC-CC
Confidence 4579999999999999988877652 46899999999999999988754221 112211 12112222335 99
Q ss_pred EEeecccccCCCCHHHHHHHHHHHHhc--cCCeEEEEc
Q 015771 107 LVIASYVLGEVPSLQDRITIVRQLWDL--TRDVLVLVE 142 (400)
Q Consensus 107 LVias~~L~eL~~~~~r~~~i~~Lw~~--~gG~LVlVE 142 (400)
+|++.... .. ...+++.+.+. +||.||+-+
T Consensus 129 ~v~~~~~~---~~---~~~~l~~~~~~LkpgG~lv~~~ 160 (210)
T 3c3p_A 129 ILFMDCDV---FN---GADVLERMNRCLAKNALLIAVN 160 (210)
T ss_dssp EEEEETTT---SC---HHHHHHHHGGGEEEEEEEEEES
T ss_pred EEEEcCCh---hh---hHHHHHHHHHhcCCCeEEEEEC
Confidence 99987432 22 23455555543 799888744
|
| >3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A* | Back alignment and structure |
|---|
Probab=98.63 E-value=6.4e-08 Score=90.87 Aligned_cols=118 Identities=14% Similarity=0.163 Sum_probs=73.5
Q ss_pred CCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCC--CCCceeechhhhHhhhhcccCCCcccE
Q 015771 30 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK--DLPLIHSYNSIQALNKDISKSEREHDL 107 (400)
Q Consensus 30 ~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~--~~~~~~~~~~~~~l~~~l~~~~~~~DL 107 (400)
.+.+|||+|||+|..++.++..++ ..+|++||+|+.|++.++..++... ++.+++.. ..++... +...++||+
T Consensus 80 ~~~~vLDiG~G~G~~~i~la~~~~--~~~v~~vD~s~~~~~~a~~~~~~~~l~~v~~~~~d--~~~~~~~-~~~~~~fD~ 154 (249)
T 3g89_A 80 GPLRVLDLGTGAGFPGLPLKIVRP--ELELVLVDATRKKVAFVERAIEVLGLKGARALWGR--AEVLARE-AGHREAYAR 154 (249)
T ss_dssp SSCEEEEETCTTTTTHHHHHHHCT--TCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEECC--HHHHTTS-TTTTTCEEE
T ss_pred CCCEEEEEcCCCCHHHHHHHHHCC--CCEEEEEECCHHHHHHHHHHHHHhCCCceEEEECc--HHHhhcc-cccCCCceE
Confidence 457999999999998888887775 3689999999999999998876432 33333221 1111100 012468999
Q ss_pred EeecccccCCCCHHHHHHHHHHHHhccCCeEEEEcCCCCCchHHHHHHHHHH
Q 015771 108 VIASYVLGEVPSLQDRITIVRQLWDLTRDVLVLVEPGTPQGSSIISQMRSHI 159 (400)
Q Consensus 108 Vias~~L~eL~~~~~r~~~i~~Lw~~~gG~LVlVE~Gtp~Gf~~I~~aR~~l 159 (400)
|++..+ .+.....+.+..++ ++||.++++....+ .+.+..+...+
T Consensus 155 I~s~a~----~~~~~ll~~~~~~L-kpgG~l~~~~g~~~--~~e~~~~~~~l 199 (249)
T 3g89_A 155 AVARAV----APLCVLSELLLPFL-EVGGAAVAMKGPRV--EEELAPLPPAL 199 (249)
T ss_dssp EEEESS----CCHHHHHHHHGGGE-EEEEEEEEEECSCC--HHHHTTHHHHH
T ss_pred EEECCc----CCHHHHHHHHHHHc-CCCeEEEEEeCCCc--HHHHHHHHHHH
Confidence 998653 22333333333333 27999998764322 24455555543
|
| >1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A* | Back alignment and structure |
|---|
Probab=98.63 E-value=1.2e-07 Score=86.63 Aligned_cols=99 Identities=16% Similarity=0.097 Sum_probs=68.5
Q ss_pred CCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCC-------CCCCceeechhhhHhhhhcccCCC
Q 015771 31 PAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGP-------KDLPLIHSYNSIQALNKDISKSER 103 (400)
Q Consensus 31 p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~-------~~~~~~~~~~~~~~l~~~l~~~~~ 103 (400)
+.+|||+|||+|..+..+++.++ ...+|+++|.|+.|++.++..+... .++.++.. +... ......
T Consensus 78 ~~~vLDiG~G~G~~~~~la~~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~-----d~~~-~~~~~~ 150 (226)
T 1i1n_A 78 GAKALDVGSGSGILTACFARMVG-CTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVG-----DGRM-GYAEEA 150 (226)
T ss_dssp TCEEEEETCTTSHHHHHHHHHHC-TTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEES-----CGGG-CCGGGC
T ss_pred CCEEEEEcCCcCHHHHHHHHHhC-CCcEEEEEeCCHHHHHHHHHHHHhhcccccCCCcEEEEEC-----Cccc-CcccCC
Confidence 47999999999999988887764 2358999999999999998877542 12222221 1221 112345
Q ss_pred cccEEeecccccCCCCHHHHHHHHHHHHhccCCeEEEEcC
Q 015771 104 EHDLVIASYVLGEVPSLQDRITIVRQLWDLTRDVLVLVEP 143 (400)
Q Consensus 104 ~~DLVias~~L~eL~~~~~r~~~i~~Lw~~~gG~LVlVE~ 143 (400)
+||+|++...+.++.. .+.+++ ++||.||+...
T Consensus 151 ~fD~i~~~~~~~~~~~------~~~~~L-kpgG~lv~~~~ 183 (226)
T 1i1n_A 151 PYDAIHVGAAAPVVPQ------ALIDQL-KPGGRLILPVG 183 (226)
T ss_dssp CEEEEEECSBBSSCCH------HHHHTE-EEEEEEEEEES
T ss_pred CcCEEEECCchHHHHH------HHHHhc-CCCcEEEEEEe
Confidence 7999999999887751 223333 37999998865
|
| >3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.62 E-value=6e-08 Score=90.27 Aligned_cols=106 Identities=11% Similarity=0.112 Sum_probs=65.6
Q ss_pred CCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcC--------CCCCCceeechhhhHhhhhcc--c
Q 015771 31 PAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQG--------PKDLPLIHSYNSIQALNKDIS--K 100 (400)
Q Consensus 31 p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~--------~~~~~~~~~~~~~~~l~~~l~--~ 100 (400)
..+|||+|||+|..+..++..++. ..+++||+|+.|++.|+..+.. ..++.++... +...++ .
T Consensus 47 ~~~vLDiGcG~G~~~~~la~~~p~--~~v~GiDis~~~l~~A~~~~~~l~~~~~~~~~nv~~~~~d-----~~~~l~~~~ 119 (235)
T 3ckk_A 47 QVEFADIGCGYGGLLVELSPLFPD--TLILGLEIRVKVSDYVQDRIRALRAAPAGGFQNIACLRSN-----AMKHLPNFF 119 (235)
T ss_dssp CEEEEEETCTTCHHHHHHGGGSTT--SEEEEEESCHHHHHHHHHHHHHHHHSTTCCCTTEEEEECC-----TTTCHHHHC
T ss_pred CCeEEEEccCCcHHHHHHHHHCCC--CeEEEEECCHHHHHHHHHHHHHHHHHHhcCCCeEEEEECc-----HHHhhhhhC
Confidence 468999999999999998887753 5899999999999998876531 2233333221 211122 2
Q ss_pred CCCcccEEeecccccCCCC--HHHH---HHHHHHHHhc--cCCeEEEEcC
Q 015771 101 SEREHDLVIASYVLGEVPS--LQDR---ITIVRQLWDL--TRDVLVLVEP 143 (400)
Q Consensus 101 ~~~~~DLVias~~L~eL~~--~~~r---~~~i~~Lw~~--~gG~LVlVE~ 143 (400)
..+.||.|++.+...+... ...| ..+++.+.+. +||.|+++-.
T Consensus 120 ~~~~~D~v~~~~~dp~~k~~h~krr~~~~~~l~~~~~~LkpGG~l~~~td 169 (235)
T 3ckk_A 120 YKGQLTKMFFLFPDPHFKRTKHKWRIISPTLLAEYAYVLRVGGLVYTITD 169 (235)
T ss_dssp CTTCEEEEEEESCC-----------CCCHHHHHHHHHHEEEEEEEEEEES
T ss_pred CCcCeeEEEEeCCCchhhhhhhhhhhhhHHHHHHHHHHCCCCCEEEEEeC
Confidence 4568999987654322211 0111 2455555543 8999998743
|
| >2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A* | Back alignment and structure |
|---|
Probab=98.62 E-value=1.2e-07 Score=93.12 Aligned_cols=102 Identities=17% Similarity=0.144 Sum_probs=63.7
Q ss_pred CCCCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCC---CCCceeechhhhHhhhhcccCCCc
Q 015771 28 GFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK---DLPLIHSYNSIQALNKDISKSERE 104 (400)
Q Consensus 28 ~~~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~---~~~~~~~~~~~~~l~~~l~~~~~~ 104 (400)
..++.+|||+|||+|..+..+++. + ..+|+++|.|+ |++.|++.++... ++.++.. ++. .++.+.++
T Consensus 62 ~~~~~~VLDiGcGtG~ls~~la~~-g--~~~v~gvD~s~-~~~~a~~~~~~~~~~~~i~~~~~-----d~~-~~~~~~~~ 131 (340)
T 2fyt_A 62 IFKDKVVLDVGCGTGILSMFAAKA-G--AKKVLGVDQSE-ILYQAMDIIRLNKLEDTITLIKG-----KIE-EVHLPVEK 131 (340)
T ss_dssp GTTTCEEEEETCTTSHHHHHHHHT-T--CSEEEEEESST-HHHHHHHHHHHTTCTTTEEEEES-----CTT-TSCCSCSC
T ss_pred hcCCCEEEEeeccCcHHHHHHHHc-C--CCEEEEEChHH-HHHHHHHHHHHcCCCCcEEEEEe-----eHH-HhcCCCCc
Confidence 355689999999999988877754 2 35899999996 9999998875432 1222221 122 22334468
Q ss_pred ccEEeecccccCCCCHHHHHHHHHHHHh--ccCCeEE
Q 015771 105 HDLVIASYVLGEVPSLQDRITIVRQLWD--LTRDVLV 139 (400)
Q Consensus 105 ~DLVias~~L~eL~~~~~r~~~i~~Lw~--~~gG~LV 139 (400)
||+|++..+...+........++..+.+ ++||.++
T Consensus 132 ~D~Ivs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li 168 (340)
T 2fyt_A 132 VDVIISEWMGYFLLFESMLDSVLYAKNKYLAKGGSVY 168 (340)
T ss_dssp EEEEEECCCBTTBTTTCHHHHHHHHHHHHEEEEEEEE
T ss_pred EEEEEEcCchhhccCHHHHHHHHHHHHhhcCCCcEEE
Confidence 9999986532222222233344444433 3799887
|
| >3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=98.62 E-value=2.6e-08 Score=91.42 Aligned_cols=91 Identities=10% Similarity=0.105 Sum_probs=61.3
Q ss_pred CCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCCCCceeechhhhHhhhhcccC-CCcccEE
Q 015771 30 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDISKS-EREHDLV 108 (400)
Q Consensus 30 ~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~~~~~~~~~~~~~l~~~l~~~-~~~~DLV 108 (400)
.+.+|||+|||+|..+..++.. ..+|+++|+|+.|++.++.... ++.++.. ++...++.. .++||+|
T Consensus 48 ~~~~vLDiGcG~G~~~~~l~~~----~~~v~~vD~s~~~~~~a~~~~~---~~~~~~~-----d~~~~~~~~~~~~fD~v 115 (226)
T 3m33_A 48 PQTRVLEAGCGHGPDAARFGPQ----AARWAAYDFSPELLKLARANAP---HADVYEW-----NGKGELPAGLGAPFGLI 115 (226)
T ss_dssp TTCEEEEESCTTSHHHHHHGGG----SSEEEEEESCHHHHHHHHHHCT---TSEEEEC-----CSCSSCCTTCCCCEEEE
T ss_pred CCCeEEEeCCCCCHHHHHHHHc----CCEEEEEECCHHHHHHHHHhCC---CceEEEc-----chhhccCCcCCCCEEEE
Confidence 3479999999999998888754 3589999999999999998732 3333322 222233434 5789999
Q ss_pred eecccccCCCCHHHHHHHHHHHHhccCCeEE
Q 015771 109 IASYVLGEVPSLQDRITIVRQLWDLTRDVLV 139 (400)
Q Consensus 109 ias~~L~eL~~~~~r~~~i~~Lw~~~gG~LV 139 (400)
+++. +.......+.+++ +|||.|+
T Consensus 116 ~~~~------~~~~~l~~~~~~L-kpgG~l~ 139 (226)
T 3m33_A 116 VSRR------GPTSVILRLPELA-APDAHFL 139 (226)
T ss_dssp EEES------CCSGGGGGHHHHE-EEEEEEE
T ss_pred EeCC------CHHHHHHHHHHHc-CCCcEEE
Confidence 9872 1222222334444 3799999
|
| >4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A* | Back alignment and structure |
|---|
Probab=98.62 E-value=5.7e-07 Score=88.52 Aligned_cols=104 Identities=14% Similarity=0.159 Sum_probs=75.1
Q ss_pred CeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCCCCceeechhhhHhhhhcccCCCcccEEeec
Q 015771 32 AKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDISKSEREHDLVIAS 111 (400)
Q Consensus 32 ~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~~~~~~~~~~~~~l~~~l~~~~~~~DLVias 111 (400)
.+|||||||+|..+.++++.+|. .++++.|. +++++.|+..+.... ...+... ..++.. .+...+|+|++.
T Consensus 181 ~~v~DvGgG~G~~~~~l~~~~p~--~~~~~~dl-p~v~~~a~~~~~~~~-~~rv~~~--~gD~~~---~~~~~~D~~~~~ 251 (353)
T 4a6d_A 181 PLMCDLGGGAGALAKECMSLYPG--CKITVFDI-PEVVWTAKQHFSFQE-EEQIDFQ--EGDFFK---DPLPEADLYILA 251 (353)
T ss_dssp SEEEEETCTTSHHHHHHHHHCSS--CEEEEEEC-HHHHHHHHHHSCC---CCSEEEE--ESCTTT---SCCCCCSEEEEE
T ss_pred CeEEeeCCCCCHHHHHHHHhCCC--ceeEeccC-HHHHHHHHHhhhhcc-cCceeee--cCcccc---CCCCCceEEEee
Confidence 69999999999999999999984 47888887 889999998875432 2222110 011111 123468999999
Q ss_pred ccccCCCCHHHHHHHHHHHHhc--cCCeEEEEcCCC
Q 015771 112 YVLGEVPSLQDRITIVRQLWDL--TRDVLVLVEPGT 145 (400)
Q Consensus 112 ~~L~eL~~~~~r~~~i~~Lw~~--~gG~LVlVE~Gt 145 (400)
++|+..+ .++...+++++.+. |||.|+|+|.-.
T Consensus 252 ~vlh~~~-d~~~~~iL~~~~~al~pgg~lli~e~~~ 286 (353)
T 4a6d_A 252 RVLHDWA-DGKCSHLLERIYHTCKPGGGILVIESLL 286 (353)
T ss_dssp SSGGGSC-HHHHHHHHHHHHHHCCTTCEEEEEECCC
T ss_pred eecccCC-HHHHHHHHHHHHhhCCCCCEEEEEEeee
Confidence 9999997 45556777777664 899999999754
|
| >2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.62 E-value=9e-08 Score=93.86 Aligned_cols=107 Identities=20% Similarity=0.236 Sum_probs=75.2
Q ss_pred CCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCC-CCCceeechhhhHhhhhcccCCCcccEE
Q 015771 30 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK-DLPLIHSYNSIQALNKDISKSEREHDLV 108 (400)
Q Consensus 30 ~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~-~~~~~~~~~~~~~l~~~l~~~~~~~DLV 108 (400)
.+.+|||+|||+|..+..++...+. .+|+++|.|+.|++.++..+.... ...++. .+.. ....++||+|
T Consensus 196 ~~~~VLDlGcG~G~~~~~la~~~~~--~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~-----~d~~---~~~~~~fD~I 265 (343)
T 2pjd_A 196 TKGKVLDVGCGAGVLSVAFARHSPK--IRLTLCDVSAPAVEASRATLAANGVEGEVFA-----SNVF---SEVKGRFDMI 265 (343)
T ss_dssp CCSBCCBTTCTTSHHHHHHHHHCTT--CBCEEEESBHHHHHHHHHHHHHTTCCCEEEE-----CSTT---TTCCSCEEEE
T ss_pred CCCeEEEecCccCHHHHHHHHHCCC--CEEEEEECCHHHHHHHHHHHHHhCCCCEEEE-----cccc---ccccCCeeEE
Confidence 4569999999999999888877642 489999999999999998875432 111111 1111 1225689999
Q ss_pred eecccccCCC--CHHHHHHHHHHHHhc--cCCeEEEEcCCCC
Q 015771 109 IASYVLGEVP--SLQDRITIVRQLWDL--TRDVLVLVEPGTP 146 (400)
Q Consensus 109 ias~~L~eL~--~~~~r~~~i~~Lw~~--~gG~LVlVE~Gtp 146 (400)
+++..++... .......+++++.+. +||.|+++.+...
T Consensus 266 v~~~~~~~g~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~ 307 (343)
T 2pjd_A 266 ISNPPFHDGMQTSLDAAQTLIRGAVRHLNSGGELRIVANAFL 307 (343)
T ss_dssp EECCCCCSSSHHHHHHHHHHHHHHGGGEEEEEEEEEEEETTS
T ss_pred EECCCcccCccCCHHHHHHHHHHHHHhCCCCcEEEEEEcCCC
Confidence 9999887532 133455677777664 8999999987543
|
| >3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A* | Back alignment and structure |
|---|
Probab=98.62 E-value=4.8e-08 Score=96.19 Aligned_cols=100 Identities=18% Similarity=0.266 Sum_probs=64.9
Q ss_pred CCCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCC--C-CCceeechhhhHhhhhcccCCCcc
Q 015771 29 FSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK--D-LPLIHSYNSIQALNKDISKSEREH 105 (400)
Q Consensus 29 ~~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~--~-~~~~~~~~~~~~l~~~l~~~~~~~ 105 (400)
+.+.+|||+|||+|..+..+++. ...+|++||.| .|++.|++.++... + +.++.. ++. .++.+.++|
T Consensus 65 ~~~~~VLDvGcG~G~~~~~la~~---g~~~v~gvD~s-~~l~~a~~~~~~~~~~~~v~~~~~-----d~~-~~~~~~~~f 134 (349)
T 3q7e_A 65 FKDKVVLDVGSGTGILCMFAAKA---GARKVIGIECS-SISDYAVKIVKANKLDHVVTIIKG-----KVE-EVELPVEKV 134 (349)
T ss_dssp HTTCEEEEESCTTSHHHHHHHHT---TCSEEEEEECS-THHHHHHHHHHHTTCTTTEEEEES-----CTT-TCCCSSSCE
T ss_pred CCCCEEEEEeccchHHHHHHHHC---CCCEEEEECcH-HHHHHHHHHHHHcCCCCcEEEEEC-----cHH-HccCCCCce
Confidence 34589999999999998887764 24589999999 59999998876432 1 222221 122 223345789
Q ss_pred cEEeecccccCC---CCHHHHHHHHHHHHhccCCeEE
Q 015771 106 DLVIASYVLGEV---PSLQDRITIVRQLWDLTRDVLV 139 (400)
Q Consensus 106 DLVias~~L~eL---~~~~~r~~~i~~Lw~~~gG~LV 139 (400)
|+|++..+...+ .........+.++++ |||.|+
T Consensus 135 D~Iis~~~~~~l~~~~~~~~~l~~~~r~Lk-pgG~li 170 (349)
T 3q7e_A 135 DIIISEWMGYCLFYESMLNTVLHARDKWLA-PDGLIF 170 (349)
T ss_dssp EEEEECCCBBTBTBTCCHHHHHHHHHHHEE-EEEEEE
T ss_pred EEEEEccccccccCchhHHHHHHHHHHhCC-CCCEEc
Confidence 999986553333 333333344445553 799886
|
| >1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A* | Back alignment and structure |
|---|
Probab=98.62 E-value=1.2e-07 Score=92.96 Aligned_cols=100 Identities=17% Similarity=0.320 Sum_probs=71.0
Q ss_pred CCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCCCCceeechhhhHhhhhcccCCCcccEEee
Q 015771 31 PAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDISKSEREHDLVIA 110 (400)
Q Consensus 31 p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~~~~~~~~~~~~~l~~~l~~~~~~~DLVia 110 (400)
+.+|||+|||+|..+.++.+.+|. .+++++|. +.|++.++.. .++.++.. ++...+ + .||+|++
T Consensus 189 ~~~vlDvG~G~G~~~~~l~~~~p~--~~~~~~D~-~~~~~~a~~~----~~v~~~~~-----d~~~~~--p--~~D~v~~ 252 (352)
T 1fp2_A 189 LESIVDVGGGTGTTAKIICETFPK--LKCIVFDR-PQVVENLSGS----NNLTYVGG-----DMFTSI--P--NADAVLL 252 (352)
T ss_dssp CSEEEEETCTTSHHHHHHHHHCTT--CEEEEEEC-HHHHTTCCCB----TTEEEEEC-----CTTTCC--C--CCSEEEE
T ss_pred CceEEEeCCCccHHHHHHHHHCCC--CeEEEeeC-HHHHhhcccC----CCcEEEec-----cccCCC--C--CccEEEe
Confidence 479999999999999999988863 48999999 9998776542 22222211 222122 2 3999999
Q ss_pred cccccCCCCHHHHHHHHHHHHh--cc---CCeEEEEcCCCCC
Q 015771 111 SYVLGEVPSLQDRITIVRQLWD--LT---RDVLVLVEPGTPQ 147 (400)
Q Consensus 111 s~~L~eL~~~~~r~~~i~~Lw~--~~---gG~LVlVE~Gtp~ 147 (400)
+++|+++++ .+...+++++.+ +| ||.|+|+|...+.
T Consensus 253 ~~~lh~~~d-~~~~~~l~~~~~~L~p~~~gG~l~i~e~~~~~ 293 (352)
T 1fp2_A 253 KYILHNWTD-KDCLRILKKCKEAVTNDGKRGKVTIIDMVIDK 293 (352)
T ss_dssp ESCGGGSCH-HHHHHHHHHHHHHHSGGGCCCEEEEEECEECT
T ss_pred ehhhccCCH-HHHHHHHHHHHHhCCCCCCCcEEEEEEeecCC
Confidence 999999974 444456666554 37 9999999975443
|
| >1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=98.61 E-value=7.3e-08 Score=91.31 Aligned_cols=99 Identities=15% Similarity=0.208 Sum_probs=68.1
Q ss_pred CCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCC-C--CCCceeechhhhHhhhhcccCCCccc
Q 015771 30 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGP-K--DLPLIHSYNSIQALNKDISKSEREHD 106 (400)
Q Consensus 30 ~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~-~--~~~~~~~~~~~~~l~~~l~~~~~~~D 106 (400)
.+.+|||+|||+|..+..+++... ...+++++|.|+.|++.++..+... . ++.++. .++.. +...++||
T Consensus 110 ~~~~VLD~G~G~G~~~~~la~~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~g~~~v~~~~-----~d~~~--~~~~~~fD 181 (275)
T 1yb2_A 110 PGMDILEVGVGSGNMSSYILYALN-GKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSR-----SDIAD--FISDQMYD 181 (275)
T ss_dssp TTCEEEEECCTTSHHHHHHHHHHT-TSSEEEEECSCHHHHHHHHHHHHTTSCCTTEEEEC-----SCTTT--CCCSCCEE
T ss_pred CcCEEEEecCCCCHHHHHHHHHcC-CCCEEEEEECCHHHHHHHHHHHHhcCCCCcEEEEE-----Cchhc--cCcCCCcc
Confidence 447999999999999888887632 2368999999999999999988654 2 222221 12222 22346799
Q ss_pred EEeecccccCCCCHHHHHHHHHHHHhc--cCCeEEEEcCC
Q 015771 107 LVIASYVLGEVPSLQDRITIVRQLWDL--TRDVLVLVEPG 144 (400)
Q Consensus 107 LVias~~L~eL~~~~~r~~~i~~Lw~~--~gG~LVlVE~G 144 (400)
+|++ .+++.. .+++++++. +||.|+++.+.
T Consensus 182 ~Vi~-----~~~~~~---~~l~~~~~~LkpgG~l~i~~~~ 213 (275)
T 1yb2_A 182 AVIA-----DIPDPW---NHVQKIASMMKPGSVATFYLPN 213 (275)
T ss_dssp EEEE-----CCSCGG---GSHHHHHHTEEEEEEEEEEESS
T ss_pred EEEE-----cCcCHH---HHHHHHHHHcCCCCEEEEEeCC
Confidence 9998 344443 455555553 89999999864
|
| >3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A* | Back alignment and structure |
|---|
Probab=98.60 E-value=1.5e-07 Score=90.81 Aligned_cols=106 Identities=12% Similarity=0.139 Sum_probs=64.6
Q ss_pred CCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcC------CCCCCceeechhhhHhhhhccc-CC
Q 015771 30 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQG------PKDLPLIHSYNSIQALNKDISK-SE 102 (400)
Q Consensus 30 ~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~------~~~~~~~~~~~~~~~l~~~l~~-~~ 102 (400)
++.+|||+|||+|..+..++...+ ..+|++||+|+.|++.|++.+.. ..++.++.. +....+.. ..
T Consensus 95 ~~~~VLdiG~G~G~~~~~l~~~~~--~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~-----D~~~~~~~~~~ 167 (304)
T 3bwc_A 95 KPERVLIIGGGDGGVLREVLRHGT--VEHCDLVDIDGEVMEQSKQHFPQISRSLADPRATVRVG-----DGLAFVRQTPD 167 (304)
T ss_dssp SCCEEEEEECTTSHHHHHHHTCTT--CCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEES-----CHHHHHHSSCT
T ss_pred CCCeEEEEcCCCCHHHHHHHhCCC--CCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEEC-----cHHHHHHhccC
Confidence 568999999999999988875432 46899999999999999987631 111222221 12111111 35
Q ss_pred CcccEEeecccccCCCCHHHH--HHHHHHHHhc--cCCeEEEEcC
Q 015771 103 REHDLVIASYVLGEVPSLQDR--ITIVRQLWDL--TRDVLVLVEP 143 (400)
Q Consensus 103 ~~~DLVias~~L~eL~~~~~r--~~~i~~Lw~~--~gG~LVlVE~ 143 (400)
++||+|++.......+.. .. .++++++.+. +||.|++...
T Consensus 168 ~~fDvIi~d~~~~~~~~~-~l~~~~~l~~~~~~LkpgG~lv~~~~ 211 (304)
T 3bwc_A 168 NTYDVVIIDTTDPAGPAS-KLFGEAFYKDVLRILKPDGICCNQGE 211 (304)
T ss_dssp TCEEEEEEECC----------CCHHHHHHHHHHEEEEEEEEEEEC
T ss_pred CceeEEEECCCCccccch-hhhHHHHHHHHHHhcCCCcEEEEecC
Confidence 689999996654432211 11 2344444432 7999998754
|
| >1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=98.59 E-value=1.7e-07 Score=88.79 Aligned_cols=105 Identities=16% Similarity=0.186 Sum_probs=67.7
Q ss_pred CCCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCCCCceeechhhhHhhhhcccCCCcccEE
Q 015771 29 FSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDISKSEREHDLV 108 (400)
Q Consensus 29 ~~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~~~~~~~~~~~~~l~~~l~~~~~~~DLV 108 (400)
..+.+|||+|||+|..+.+++...+ ...+++++|.|+.+++.|+..+....-...+... ..++...+ ..+.||+|
T Consensus 111 ~~~~~VLDiG~G~G~~~~~la~~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~--~~d~~~~~--~~~~~D~V 185 (277)
T 1o54_A 111 KEGDRIIDTGVGSGAMCAVLARAVG-SSGKVFAYEKREEFAKLAESNLTKWGLIERVTIK--VRDISEGF--DEKDVDAL 185 (277)
T ss_dssp CTTCEEEEECCTTSHHHHHHHHHTT-TTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEE--CCCGGGCC--SCCSEEEE
T ss_pred CCCCEEEEECCcCCHHHHHHHHHhC-CCcEEEEEECCHHHHHHHHHHHHHcCCCCCEEEE--ECCHHHcc--cCCccCEE
Confidence 3457999999999999988887743 2368999999999999999887543210111110 11222222 34579999
Q ss_pred eecccccCCCCHHHHHHHHHHHHhccCCeEEEEcCC
Q 015771 109 IASYVLGEVPSLQDRITIVRQLWDLTRDVLVLVEPG 144 (400)
Q Consensus 109 ias~~L~eL~~~~~r~~~i~~Lw~~~gG~LVlVE~G 144 (400)
++. .++.......+.++++ +||.|+++.+.
T Consensus 186 ~~~-----~~~~~~~l~~~~~~L~-pgG~l~~~~~~ 215 (277)
T 1o54_A 186 FLD-----VPDPWNYIDKCWEALK-GGGRFATVCPT 215 (277)
T ss_dssp EEC-----CSCGGGTHHHHHHHEE-EEEEEEEEESS
T ss_pred EEC-----CcCHHHHHHHHHHHcC-CCCEEEEEeCC
Confidence 983 3434333333444442 79999999864
|
| >3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=98.58 E-value=2.7e-08 Score=92.99 Aligned_cols=104 Identities=14% Similarity=0.222 Sum_probs=67.1
Q ss_pred CCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCC---CCCceeechhhhHhhhhccc--CCCc
Q 015771 30 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK---DLPLIHSYNSIQALNKDISK--SERE 104 (400)
Q Consensus 30 ~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~---~~~~~~~~~~~~~l~~~l~~--~~~~ 104 (400)
++.+|||+|||+|..+..++..++. ..+|+++|.|+.|++.|+..++... ++.++.... ...+. .+.. ..++
T Consensus 60 ~~~~VLDiG~G~G~~t~~la~~~~~-~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda-~~~l~-~~~~~~~~~~ 136 (242)
T 3r3h_A 60 RAKKVLELGTFTGYSALAMSLALPD-DGQVITCDINEGWTKHAHPYWREAKQEHKIKLRLGPA-LDTLH-SLLNEGGEHQ 136 (242)
T ss_dssp TCSEEEEEESCCSHHHHHHHHTSCT-TCEEEEEECCCSSCCCSHHHHHHTTCTTTEEEEESCH-HHHHH-HHHHHHCSSC
T ss_pred CcCEEEEeeCCcCHHHHHHHHhCCC-CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCH-HHHHH-HHhhccCCCC
Confidence 4689999999999999988887752 4689999999999999988876432 222222110 01111 1100 1468
Q ss_pred ccEEeecccccCCCCHHHHHHHHHHHHhc--cCCeEEEEc
Q 015771 105 HDLVIASYVLGEVPSLQDRITIVRQLWDL--TRDVLVLVE 142 (400)
Q Consensus 105 ~DLVias~~L~eL~~~~~r~~~i~~Lw~~--~gG~LVlVE 142 (400)
||+|++.... .....+++.+++. +||.||+-+
T Consensus 137 fD~V~~d~~~------~~~~~~l~~~~~~LkpGG~lv~d~ 170 (242)
T 3r3h_A 137 FDFIFIDADK------TNYLNYYELALKLVTPKGLIAIDN 170 (242)
T ss_dssp EEEEEEESCG------GGHHHHHHHHHHHEEEEEEEEEEC
T ss_pred EeEEEEcCCh------HHhHHHHHHHHHhcCCCeEEEEEC
Confidence 9999987542 2233445555443 799988743
|
| >3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum} | Back alignment and structure |
|---|
Probab=98.58 E-value=2.1e-07 Score=86.44 Aligned_cols=104 Identities=16% Similarity=0.200 Sum_probs=66.7
Q ss_pred CCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCC---CCceeechhhhHhhhhcc-c--CCC
Q 015771 30 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKD---LPLIHSYNSIQALNKDIS-K--SER 103 (400)
Q Consensus 30 ~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~---~~~~~~~~~~~~l~~~l~-~--~~~ 103 (400)
++.+|||+|||+|..+..++..++. ..+++++|.|+.|++.|+..++..+. +.++... ....+. .+. . ..+
T Consensus 70 ~~~~VLeiG~G~G~~~~~la~~~~~-~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gd-a~~~l~-~l~~~~~~~~ 146 (237)
T 3c3y_A 70 NAKKTIEVGVFTGYSLLLTALSIPD-DGKITAIDFDREAYEIGLPFIRKAGVEHKINFIESD-AMLALD-NLLQGQESEG 146 (237)
T ss_dssp TCCEEEEECCTTSHHHHHHHHHSCT-TCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESC-HHHHHH-HHHHSTTCTT
T ss_pred CCCEEEEeCCCCCHHHHHHHHhCCC-CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcC-HHHHHH-HHHhccCCCC
Confidence 5689999999999999888888763 46999999999999999998864321 1122111 011111 111 0 146
Q ss_pred cccEEeecccccCCCCHHHHHHHHHHHHhc--cCCeEEEEc
Q 015771 104 EHDLVIASYVLGEVPSLQDRITIVRQLWDL--TRDVLVLVE 142 (400)
Q Consensus 104 ~~DLVias~~L~eL~~~~~r~~~i~~Lw~~--~gG~LVlVE 142 (400)
+||+|++.... .....+++.+.+. +||+||+-+
T Consensus 147 ~fD~I~~d~~~------~~~~~~l~~~~~~L~pGG~lv~d~ 181 (237)
T 3c3y_A 147 SYDFGFVDADK------PNYIKYHERLMKLVKVGGIVAYDN 181 (237)
T ss_dssp CEEEEEECSCG------GGHHHHHHHHHHHEEEEEEEEEEC
T ss_pred CcCEEEECCch------HHHHHHHHHHHHhcCCCeEEEEec
Confidence 89999986431 1223444554443 799887643
|
| >2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.58 E-value=1.1e-07 Score=87.54 Aligned_cols=100 Identities=16% Similarity=0.104 Sum_probs=62.4
Q ss_pred CCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCCCCceeechhhhHhhh--hcccCCCcccEE
Q 015771 31 PAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNK--DISKSEREHDLV 108 (400)
Q Consensus 31 p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~~~~~~~~~~~~~l~~--~l~~~~~~~DLV 108 (400)
..+|||+|||+|..+..+++.++ ...+++++|.|+.|++.+...++...++.++.. ++.. .++...++||+|
T Consensus 78 ~~~vLDlG~G~G~~~~~la~~~g-~~~~v~gvD~s~~~i~~~~~~a~~~~~v~~~~~-----d~~~~~~~~~~~~~~D~V 151 (233)
T 2ipx_A 78 GAKVLYLGAASGTTVSHVSDIVG-PDGLVYAVEFSHRSGRDLINLAKKRTNIIPVIE-----DARHPHKYRMLIAMVDVI 151 (233)
T ss_dssp TCEEEEECCTTSHHHHHHHHHHC-TTCEEEEECCCHHHHHHHHHHHHHCTTEEEECS-----CTTCGGGGGGGCCCEEEE
T ss_pred CCEEEEEcccCCHHHHHHHHHhC-CCcEEEEEECCHHHHHHHHHHhhccCCeEEEEc-----ccCChhhhcccCCcEEEE
Confidence 46999999999999998887763 235899999998877665555543223322221 1211 122234689999
Q ss_pred eecccccCCCCHHHHHHHHHHHHh--ccCCeEEEE
Q 015771 109 IASYVLGEVPSLQDRITIVRQLWD--LTRDVLVLV 141 (400)
Q Consensus 109 ias~~L~eL~~~~~r~~~i~~Lw~--~~gG~LVlV 141 (400)
++... .......++.++.+ ++||.|++.
T Consensus 152 ~~~~~-----~~~~~~~~~~~~~~~LkpgG~l~i~ 181 (233)
T 2ipx_A 152 FADVA-----QPDQTRIVALNAHTFLRNGGHFVIS 181 (233)
T ss_dssp EECCC-----CTTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred EEcCC-----CccHHHHHHHHHHHHcCCCeEEEEE
Confidence 98544 22233334444443 379988885
|
| >2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A* | Back alignment and structure |
|---|
Probab=98.58 E-value=7.8e-08 Score=90.30 Aligned_cols=113 Identities=18% Similarity=0.154 Sum_probs=72.2
Q ss_pred HHHHHHHHHHHHCCCCCCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCC-CCceeechhhh
Q 015771 14 FTLLVTESFARRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKD-LPLIHSYNSIQ 92 (400)
Q Consensus 14 ~~~~vL~el~~rlp~~~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~-~~~~~~~~~~~ 92 (400)
+...++..+.+.+ ..+.+|||+|||+|..+.+++... .+|+++|.|+.|++.++..+..... +.+...
T Consensus 106 tt~~~~~~l~~~~--~~~~~VLDiGcG~G~l~~~la~~g----~~v~gvDi~~~~v~~a~~n~~~~~~~v~~~~~----- 174 (254)
T 2nxc_A 106 TTRLALKALARHL--RPGDKVLDLGTGSGVLAIAAEKLG----GKALGVDIDPMVLPQAEANAKRNGVRPRFLEG----- 174 (254)
T ss_dssp HHHHHHHHHHHHC--CTTCEEEEETCTTSHHHHHHHHTT----CEEEEEESCGGGHHHHHHHHHHTTCCCEEEES-----
T ss_pred HHHHHHHHHHHhc--CCCCEEEEecCCCcHHHHHHHHhC----CeEEEEECCHHHHHHHHHHHHHcCCcEEEEEC-----
Confidence 3344555555443 235799999999999988877532 2899999999999999988754321 222211
Q ss_pred HhhhhcccCCCcccEEeecccccCCCCHHHHHHHHHHHHhc--cCCeEEEEcCCC
Q 015771 93 ALNKDISKSEREHDLVIASYVLGEVPSLQDRITIVRQLWDL--TRDVLVLVEPGT 145 (400)
Q Consensus 93 ~l~~~l~~~~~~~DLVias~~L~eL~~~~~r~~~i~~Lw~~--~gG~LVlVE~Gt 145 (400)
++...+ ..++||+|+++...+. ...++..+.+. +||.|++.....
T Consensus 175 d~~~~~--~~~~fD~Vv~n~~~~~------~~~~l~~~~~~LkpgG~lils~~~~ 221 (254)
T 2nxc_A 175 SLEAAL--PFGPFDLLVANLYAEL------HAALAPRYREALVPGGRALLTGILK 221 (254)
T ss_dssp CHHHHG--GGCCEEEEEEECCHHH------HHHHHHHHHHHEEEEEEEEEEEEEG
T ss_pred ChhhcC--cCCCCCEEEECCcHHH------HHHHHHHHHHHcCCCCEEEEEeecc
Confidence 122222 2458999998754332 23445555442 799999976543
|
| >2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A | Back alignment and structure |
|---|
Probab=98.56 E-value=1.4e-07 Score=92.81 Aligned_cols=109 Identities=16% Similarity=0.203 Sum_probs=69.5
Q ss_pred HHHHHHHCCCCCCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCC---CCCceeechhhhHhh
Q 015771 19 TESFARRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK---DLPLIHSYNSIQALN 95 (400)
Q Consensus 19 L~el~~rlp~~~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~---~~~~~~~~~~~~~l~ 95 (400)
...+.+.+..+++.+|||+|||+|..+..++.. ...+|++||.|+ |++.|+++++... ++.++.. ++.
T Consensus 39 ~~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~---g~~~V~~vD~s~-~~~~a~~~~~~~~l~~~v~~~~~-----d~~ 109 (348)
T 2y1w_A 39 QRAILQNHTDFKDKIVLDVGCGSGILSFFAAQA---GARKIYAVEAST-MAQHAEVLVKSNNLTDRIVVIPG-----KVE 109 (348)
T ss_dssp HHHHHHTGGGTTTCEEEEETCTTSHHHHHHHHT---TCSEEEEEECST-HHHHHHHHHHHTTCTTTEEEEES-----CTT
T ss_pred HHHHHhccccCCcCEEEEcCCCccHHHHHHHhC---CCCEEEEECCHH-HHHHHHHHHHHcCCCCcEEEEEc-----chh
Confidence 344555554556789999999999988877753 235899999996 8899988875432 1222221 122
Q ss_pred hhcccCCCcccEEeecccccCCCCHHHHHHHHHHHHh--ccCCeEE
Q 015771 96 KDISKSEREHDLVIASYVLGEVPSLQDRITIVRQLWD--LTRDVLV 139 (400)
Q Consensus 96 ~~l~~~~~~~DLVias~~L~eL~~~~~r~~~i~~Lw~--~~gG~LV 139 (400)
.++ ..++||+|++..++.++... .....+.++.+ ++||.++
T Consensus 110 -~~~-~~~~~D~Ivs~~~~~~~~~~-~~~~~l~~~~~~LkpgG~li 152 (348)
T 2y1w_A 110 -EVS-LPEQVDIIISEPMGYMLFNE-RMLESYLHAKKYLKPSGNMF 152 (348)
T ss_dssp -TCC-CSSCEEEEEECCCBTTBTTT-SHHHHHHHGGGGEEEEEEEE
T ss_pred -hCC-CCCceeEEEEeCchhcCChH-HHHHHHHHHHhhcCCCeEEE
Confidence 122 23579999998887766432 23334444433 2788887
|
| >3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=98.55 E-value=1e-07 Score=89.45 Aligned_cols=106 Identities=15% Similarity=0.088 Sum_probs=66.4
Q ss_pred CCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCC---CCceeechhhhHhhhhcc-cCCCcc
Q 015771 30 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKD---LPLIHSYNSIQALNKDIS-KSEREH 105 (400)
Q Consensus 30 ~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~---~~~~~~~~~~~~l~~~l~-~~~~~~ 105 (400)
.+.+|||+|||+|..+..++...+ .+|++||+|+.|++.|+..+..... +.++.. ++..... ...++|
T Consensus 49 ~~~~vLDlG~G~G~~~~~la~~~~---~~v~gvDi~~~~~~~a~~n~~~~~~~~~v~~~~~-----D~~~~~~~~~~~~f 120 (259)
T 3lpm_A 49 RKGKIIDLCSGNGIIPLLLSTRTK---AKIVGVEIQERLADMAKRSVAYNQLEDQIEIIEY-----DLKKITDLIPKERA 120 (259)
T ss_dssp SCCEEEETTCTTTHHHHHHHTTCC---CEEEEECCSHHHHHHHHHHHHHTTCTTTEEEECS-----CGGGGGGTSCTTCE
T ss_pred CCCEEEEcCCchhHHHHHHHHhcC---CcEEEEECCHHHHHHHHHHHHHCCCcccEEEEEC-----cHHHhhhhhccCCc
Confidence 457999999999999988886543 3899999999999999998764321 222221 2221111 235789
Q ss_pred cEEeecccccCC-----CCH------------HHHHHHHHHHHhc--cCCeEEEEcC
Q 015771 106 DLVIASYVLGEV-----PSL------------QDRITIVRQLWDL--TRDVLVLVEP 143 (400)
Q Consensus 106 DLVias~~L~eL-----~~~------------~~r~~~i~~Lw~~--~gG~LVlVE~ 143 (400)
|+|+++-.+... .+. .....++..+.+. +||.|+++-+
T Consensus 121 D~Ii~npPy~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 177 (259)
T 3lpm_A 121 DIVTCNPPYFATPDTSLKNTNEHFRIARHEVMCTLEDTIRVAASLLKQGGKANFVHR 177 (259)
T ss_dssp EEEEECCCC-----------------------HHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred cEEEECCCCCCCccccCCCCchHHHhhhccccCCHHHHHHHHHHHccCCcEEEEEEc
Confidence 999996333221 111 1122345555443 7999999865
|
| >2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=98.55 E-value=1.6e-07 Score=86.83 Aligned_cols=104 Identities=12% Similarity=0.104 Sum_probs=66.9
Q ss_pred CCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCC---CCceeechhhhHhhhhcc-------
Q 015771 30 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKD---LPLIHSYNSIQALNKDIS------- 99 (400)
Q Consensus 30 ~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~---~~~~~~~~~~~~l~~~l~------- 99 (400)
.+.+|||+|||+|..+..++..++ ...+|+++|.|+.+++.|+..+..... +.++.... ...+. .+.
T Consensus 60 ~~~~VLdiG~G~G~~~~~la~~~~-~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~d~-~~~~~-~~~~~~~~~~ 136 (239)
T 2hnk_A 60 GAKRIIEIGTFTGYSSLCFASALP-EDGKILCCDVSEEWTNVARKYWKENGLENKIFLKLGSA-LETLQ-VLIDSKSAPS 136 (239)
T ss_dssp TCSEEEEECCTTCHHHHHHHHHSC-TTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCH-HHHHH-HHHHCSSCCG
T ss_pred CcCEEEEEeCCCCHHHHHHHHhCC-CCCEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCH-HHHHH-HHHhhccccc
Confidence 357999999999999998888875 246899999999999999998754321 22222110 01111 010
Q ss_pred ----cC-C-CcccEEeecccccCCCCHHHHHHHHHHHHhc--cCCeEEEEc
Q 015771 100 ----KS-E-REHDLVIASYVLGEVPSLQDRITIVRQLWDL--TRDVLVLVE 142 (400)
Q Consensus 100 ----~~-~-~~~DLVias~~L~eL~~~~~r~~~i~~Lw~~--~gG~LVlVE 142 (400)
.. . ++||+|++......+ ..++..+.+. +||.||+.+
T Consensus 137 ~~~~f~~~~~~fD~I~~~~~~~~~------~~~l~~~~~~L~pgG~lv~~~ 181 (239)
T 2hnk_A 137 WASDFAFGPSSIDLFFLDADKENY------PNYYPLILKLLKPGGLLIADN 181 (239)
T ss_dssp GGTTTCCSTTCEEEEEECSCGGGH------HHHHHHHHHHEEEEEEEEEEC
T ss_pred ccccccCCCCCcCEEEEeCCHHHH------HHHHHHHHHHcCCCeEEEEEc
Confidence 11 1 689999988653322 2344444432 799999865
|
| >1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6 | Back alignment and structure |
|---|
Probab=98.54 E-value=1.3e-07 Score=92.17 Aligned_cols=99 Identities=17% Similarity=0.182 Sum_probs=62.0
Q ss_pred CCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCC---CCceeechhhhHhhhhcccCCCccc
Q 015771 30 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKD---LPLIHSYNSIQALNKDISKSEREHD 106 (400)
Q Consensus 30 ~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~---~~~~~~~~~~~~l~~~l~~~~~~~D 106 (400)
++.+|||+|||+|..+..+++. + ..+|+++|.| .|++.|++.++...- +.++.. ++. .++.+.++||
T Consensus 38 ~~~~VLDiGcGtG~ls~~la~~-g--~~~v~~vD~s-~~~~~a~~~~~~~~~~~~i~~~~~-----d~~-~~~~~~~~~D 107 (328)
T 1g6q_1 38 KDKIVLDVGCGTGILSMFAAKH-G--AKHVIGVDMS-SIIEMAKELVELNGFSDKITLLRG-----KLE-DVHLPFPKVD 107 (328)
T ss_dssp TTCEEEEETCTTSHHHHHHHHT-C--CSEEEEEESS-THHHHHHHHHHHTTCTTTEEEEES-----CTT-TSCCSSSCEE
T ss_pred CCCEEEEecCccHHHHHHHHHC-C--CCEEEEEChH-HHHHHHHHHHHHcCCCCCEEEEEC-----chh-hccCCCCccc
Confidence 4579999999999988877753 2 3589999999 699999988764321 222221 122 1223346899
Q ss_pred EEeecccccCC---CCHHHHHHHHHHHHhccCCeEE
Q 015771 107 LVIASYVLGEV---PSLQDRITIVRQLWDLTRDVLV 139 (400)
Q Consensus 107 LVias~~L~eL---~~~~~r~~~i~~Lw~~~gG~LV 139 (400)
+|++..+...+ .........+.+++ ++||.++
T Consensus 108 ~Ivs~~~~~~l~~~~~~~~~l~~~~~~L-kpgG~li 142 (328)
T 1g6q_1 108 IIISEWMGYFLLYESMMDTVLYARDHYL-VEGGLIF 142 (328)
T ss_dssp EEEECCCBTTBSTTCCHHHHHHHHHHHE-EEEEEEE
T ss_pred EEEEeCchhhcccHHHHHHHHHHHHhhc-CCCeEEE
Confidence 99987543333 22222233333444 3789887
|
| >1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A* | Back alignment and structure |
|---|
Probab=98.54 E-value=1.8e-07 Score=91.95 Aligned_cols=99 Identities=16% Similarity=0.316 Sum_probs=69.8
Q ss_pred CCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCCCCceeechhhhHhhhhcccCCCcccEEee
Q 015771 31 PAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDISKSEREHDLVIA 110 (400)
Q Consensus 31 p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~~~~~~~~~~~~~l~~~l~~~~~~~DLVia 110 (400)
+.+|||+|||+|..+.++.+.+|. .+++++|. +.|++.++. ..++.++.. ++.. +.+ .||+|++
T Consensus 194 ~~~vlDvG~G~G~~~~~l~~~~p~--~~~~~~D~-~~~~~~a~~----~~~v~~~~~-----d~~~--~~~--~~D~v~~ 257 (358)
T 1zg3_A 194 LESLVDVGGGTGGVTKLIHEIFPH--LKCTVFDQ-PQVVGNLTG----NENLNFVGG-----DMFK--SIP--SADAVLL 257 (358)
T ss_dssp CSEEEEETCTTSHHHHHHHHHCTT--SEEEEEEC-HHHHSSCCC----CSSEEEEEC-----CTTT--CCC--CCSEEEE
T ss_pred CCEEEEECCCcCHHHHHHHHHCCC--CeEEEecc-HHHHhhccc----CCCcEEEeC-----ccCC--CCC--CceEEEE
Confidence 379999999999999999988863 47999999 688766543 122222211 2221 212 4999999
Q ss_pred cccccCCCCHHHHHHHHHHHHhc--c---CCeEEEEcCCCC
Q 015771 111 SYVLGEVPSLQDRITIVRQLWDL--T---RDVLVLVEPGTP 146 (400)
Q Consensus 111 s~~L~eL~~~~~r~~~i~~Lw~~--~---gG~LVlVE~Gtp 146 (400)
+++|+++++ .+...+++++.+. + ||.|+|+|...+
T Consensus 258 ~~vlh~~~d-~~~~~~l~~~~~~L~p~~~gG~l~i~e~~~~ 297 (358)
T 1zg3_A 258 KWVLHDWND-EQSLKILKNSKEAISHKGKDGKVIIIDISID 297 (358)
T ss_dssp ESCGGGSCH-HHHHHHHHHHHHHTGGGGGGCEEEEEECEEC
T ss_pred cccccCCCH-HHHHHHHHHHHHhCCCCCCCcEEEEEEeccC
Confidence 999999974 4455666666653 7 999999987543
|
| >2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=98.53 E-value=2.4e-07 Score=87.24 Aligned_cols=47 Identities=28% Similarity=0.343 Sum_probs=41.2
Q ss_pred CCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcC
Q 015771 30 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQG 78 (400)
Q Consensus 30 ~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~ 78 (400)
.+.+|||+|||+|..+..++...+ ..++++||+++.|++.|+..+..
T Consensus 36 ~~~~VLDlG~G~G~~~l~la~~~~--~~~v~gvDi~~~~~~~a~~n~~~ 82 (260)
T 2ozv_A 36 RACRIADLGAGAGAAGMAVAARLE--KAEVTLYERSQEMAEFARRSLEL 82 (260)
T ss_dssp SCEEEEECCSSSSHHHHHHHHHCT--TEEEEEEESSHHHHHHHHHHTTS
T ss_pred CCCEEEEeCChHhHHHHHHHHhCC--CCeEEEEECCHHHHHHHHHHHHh
Confidence 457999999999999998888775 36899999999999999998865
|
| >3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A* | Back alignment and structure |
|---|
Probab=98.52 E-value=8.4e-09 Score=95.29 Aligned_cols=78 Identities=14% Similarity=0.031 Sum_probs=56.9
Q ss_pred CCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCC---CCCceeechhhhHhhhhcccCCCccc
Q 015771 30 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK---DLPLIHSYNSIQALNKDISKSEREHD 106 (400)
Q Consensus 30 ~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~---~~~~~~~~~~~~~l~~~l~~~~~~~D 106 (400)
.+.+|||+|||+|..+..++.. ..+|+++|.|+.|++.|+..+.... ++.++.. ++.. ++ ...+||
T Consensus 78 ~~~~vLD~gcG~G~~~~~la~~----~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~-----d~~~-~~-~~~~~D 146 (241)
T 3gdh_A 78 KCDVVVDAFCGVGGNTIQFALT----GMRVIAIDIDPVKIALARNNAEVYGIADKIEFICG-----DFLL-LA-SFLKAD 146 (241)
T ss_dssp CCSEEEETTCTTSHHHHHHHHT----TCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEES-----CHHH-HG-GGCCCS
T ss_pred CCCEEEECccccCHHHHHHHHc----CCEEEEEECCHHHHHHHHHHHHHcCCCcCeEEEEC-----ChHH-hc-ccCCCC
Confidence 4579999999999999888753 3689999999999999998876432 1222221 2221 11 346899
Q ss_pred EEeecccccCCC
Q 015771 107 LVIASYVLGEVP 118 (400)
Q Consensus 107 LVias~~L~eL~ 118 (400)
+|++...++...
T Consensus 147 ~v~~~~~~~~~~ 158 (241)
T 3gdh_A 147 VVFLSPPWGGPD 158 (241)
T ss_dssp EEEECCCCSSGG
T ss_pred EEEECCCcCCcc
Confidence 999998888764
|
| >2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.52 E-value=1.6e-07 Score=84.96 Aligned_cols=88 Identities=15% Similarity=0.233 Sum_probs=58.9
Q ss_pred CCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCCCCceeechhhhHhhhhcccCCCcccEEe
Q 015771 30 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDISKSEREHDLVI 109 (400)
Q Consensus 30 ~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~~~~~~~~~~~~~l~~~l~~~~~~~DLVi 109 (400)
.+.+|||+|||+|..+..+. .+++++|.|+. ++.++.. ++. .++...++||+|+
T Consensus 67 ~~~~vLDiG~G~G~~~~~l~-------~~v~~~D~s~~-------------~~~~~~~-----d~~-~~~~~~~~fD~v~ 120 (215)
T 2zfu_A 67 ASLVVADFGCGDCRLASSIR-------NPVHCFDLASL-------------DPRVTVC-----DMA-QVPLEDESVDVAV 120 (215)
T ss_dssp TTSCEEEETCTTCHHHHHCC-------SCEEEEESSCS-------------STTEEES-----CTT-SCSCCTTCEEEEE
T ss_pred CCCeEEEECCcCCHHHHHhh-------ccEEEEeCCCC-------------CceEEEe-----ccc-cCCCCCCCEeEEE
Confidence 34799999999999876552 47999999987 1222221 121 1333456899999
Q ss_pred ecccccCCCCHHHHHHHHHHHHhccCCeEEEEcCCC
Q 015771 110 ASYVLGEVPSLQDRITIVRQLWDLTRDVLVLVEPGT 145 (400)
Q Consensus 110 as~~L~eL~~~~~r~~~i~~Lw~~~gG~LVlVE~Gt 145 (400)
++++|+. .+.......+.++++ +||.|++++...
T Consensus 121 ~~~~l~~-~~~~~~l~~~~~~L~-~gG~l~i~~~~~ 154 (215)
T 2zfu_A 121 FCLSLMG-TNIRDFLEEANRVLK-PGGLLKVAEVSS 154 (215)
T ss_dssp EESCCCS-SCHHHHHHHHHHHEE-EEEEEEEEECGG
T ss_pred Eehhccc-cCHHHHHHHHHHhCC-CCeEEEEEEcCC
Confidence 9999974 444433344444442 799999998754
|
| >2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A* | Back alignment and structure |
|---|
Probab=98.52 E-value=2.6e-07 Score=89.98 Aligned_cols=107 Identities=13% Similarity=0.214 Sum_probs=65.2
Q ss_pred CCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCC---CCceeechhhhHhhhhcccCCCccc
Q 015771 30 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKD---LPLIHSYNSIQALNKDISKSEREHD 106 (400)
Q Consensus 30 ~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~---~~~~~~~~~~~~l~~~l~~~~~~~D 106 (400)
.|.+|||+|||+|..+..++...+ ..++++||+|+.|++.|++.+....+ .+.+... ..+....++...++||
T Consensus 116 ~~~~VLdiG~G~G~~~~~l~~~~~--~~~v~~vDis~~~l~~ar~~~~~~~~~~~~~~v~~~--~~D~~~~l~~~~~~fD 191 (321)
T 2pt6_A 116 EPKNVLVVGGGDGGIIRELCKYKS--VENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVF--IEDASKFLENVTNTYD 191 (321)
T ss_dssp SCCEEEEEECTTCHHHHHHTTCTT--CCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEE--ESCHHHHHHHCCSCEE
T ss_pred CCCEEEEEcCCccHHHHHHHHcCC--CCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEE--EccHHHHHhhcCCCce
Confidence 468999999999999988875433 46899999999999999998765210 1111110 1122111222346899
Q ss_pred EEeecccccCCCCHHHH--HHHHHHHHhc--cCCeEEEE
Q 015771 107 LVIASYVLGEVPSLQDR--ITIVRQLWDL--TRDVLVLV 141 (400)
Q Consensus 107 LVias~~L~eL~~~~~r--~~~i~~Lw~~--~gG~LVlV 141 (400)
+|++...- .+...... .++++++.+. +||.|++.
T Consensus 192 vIi~d~~~-p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~ 229 (321)
T 2pt6_A 192 VIIVDSSD-PIGPAETLFNQNFYEKIYNALKPNGYCVAQ 229 (321)
T ss_dssp EEEEECCC-SSSGGGGGSSHHHHHHHHHHEEEEEEEEEE
T ss_pred EEEECCcC-CCCcchhhhHHHHHHHHHHhcCCCcEEEEE
Confidence 99986431 11111111 3445554443 78988875
|
| >1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20 | Back alignment and structure |
|---|
Probab=98.52 E-value=3e-07 Score=82.50 Aligned_cols=98 Identities=20% Similarity=0.233 Sum_probs=66.2
Q ss_pred CCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCC--CCCceeechhhhHhhhhcccCCCcccE
Q 015771 30 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK--DLPLIHSYNSIQALNKDISKSEREHDL 107 (400)
Q Consensus 30 ~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~--~~~~~~~~~~~~~l~~~l~~~~~~~DL 107 (400)
.+.+|||+|||+|..+..++..++ ..+++++|.|+.|++.++..+.... ++.++.. ++.. .. ..++||+
T Consensus 65 ~~~~vLDiG~G~G~~~~~l~~~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~-----d~~~-~~-~~~~~D~ 135 (207)
T 1jsx_A 65 QGERFIDVGTGPGLPGIPLSIVRP--EAHFTLLDSLGKRVRFLRQVQHELKLENIEPVQS-----RVEE-FP-SEPPFDG 135 (207)
T ss_dssp CSSEEEEETCTTTTTHHHHHHHCT--TSEEEEEESCHHHHHHHHHHHHHTTCSSEEEEEC-----CTTT-SC-CCSCEEE
T ss_pred CCCeEEEECCCCCHHHHHHHHHCC--CCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEec-----chhh-CC-ccCCcCE
Confidence 357999999999999988888775 3589999999999999998876432 2222211 1221 11 2468999
Q ss_pred EeecccccCCCCHHHHHHHHHHHHhc--cCCeEEEEcC
Q 015771 108 VIASYVLGEVPSLQDRITIVRQLWDL--TRDVLVLVEP 143 (400)
Q Consensus 108 Vias~~L~eL~~~~~r~~~i~~Lw~~--~gG~LVlVE~ 143 (400)
|++..+ .+. ..++..+.+. +||.+++...
T Consensus 136 i~~~~~----~~~---~~~l~~~~~~L~~gG~l~~~~~ 166 (207)
T 1jsx_A 136 VISRAF----ASL---NDMVSWCHHLPGEQGRFYALKG 166 (207)
T ss_dssp EECSCS----SSH---HHHHHHHTTSEEEEEEEEEEES
T ss_pred EEEecc----CCH---HHHHHHHHHhcCCCcEEEEEeC
Confidence 997432 222 3455555543 7999888743
|
| >1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A* | Back alignment and structure |
|---|
Probab=98.52 E-value=3.1e-07 Score=88.33 Aligned_cols=122 Identities=16% Similarity=0.142 Sum_probs=69.8
Q ss_pred CCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcC----C--CCCCceeechhhhHhhhhcccCCC
Q 015771 30 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQG----P--KDLPLIHSYNSIQALNKDISKSER 103 (400)
Q Consensus 30 ~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~----~--~~~~~~~~~~~~~~l~~~l~~~~~ 103 (400)
.+.+|||+|||+|..+..++...+ ..+|++||+|+.|++.|++.+.. . .++.++.. +....++...+
T Consensus 90 ~~~~VLdiG~G~G~~~~~l~~~~~--~~~v~~vDid~~~~~~a~~~~~~~~~~~~~~~v~~~~~-----D~~~~l~~~~~ 162 (296)
T 1inl_A 90 NPKKVLIIGGGDGGTLREVLKHDS--VEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIA-----NGAEYVRKFKN 162 (296)
T ss_dssp SCCEEEEEECTTCHHHHHHTTSTT--CSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEES-----CHHHHGGGCSS
T ss_pred CCCEEEEEcCCcCHHHHHHHhcCC--CCEEEEEECCHHHHHHHHHHhHhhccccCCCceEEEEC-----cHHHHHhhCCC
Confidence 468999999999999988876543 46899999999999999987642 1 12222221 22212222346
Q ss_pred cccEEeecccccCCCCHH--HHHHHHHHHHhc--cCCeEEEEcCCCCC-chHHHHHHHHHH
Q 015771 104 EHDLVIASYVLGEVPSLQ--DRITIVRQLWDL--TRDVLVLVEPGTPQ-GSSIISQMRSHI 159 (400)
Q Consensus 104 ~~DLVias~~L~eL~~~~--~r~~~i~~Lw~~--~gG~LVlVE~Gtp~-Gf~~I~~aR~~l 159 (400)
+||+|++...-..+.... ...++++++.+. +||.|++. -++|. .-+.+..+.+.+
T Consensus 163 ~fD~Ii~d~~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~-~~~~~~~~~~~~~~~~~l 222 (296)
T 1inl_A 163 EFDVIIIDSTDPTAGQGGHLFTEEFYQACYDALKEDGVFSAE-TEDPFYDIGWFKLAYRRI 222 (296)
T ss_dssp CEEEEEEEC----------CCSHHHHHHHHHHEEEEEEEEEE-CCCTTTTHHHHHHHHHHH
T ss_pred CceEEEEcCCCcccCchhhhhHHHHHHHHHHhcCCCcEEEEE-ccCcccCHHHHHHHHHHH
Confidence 899999743211011010 013444444443 79988875 34442 223344444443
|
| >2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A* | Back alignment and structure |
|---|
Probab=98.51 E-value=2e-07 Score=90.13 Aligned_cols=123 Identities=17% Similarity=0.163 Sum_probs=70.5
Q ss_pred CCCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcC------CCCCCceeechhhhHhhhhcccCC
Q 015771 29 FSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQG------PKDLPLIHSYNSIQALNKDISKSE 102 (400)
Q Consensus 29 ~~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~------~~~~~~~~~~~~~~~l~~~l~~~~ 102 (400)
..+.+|||+|||+|..+..++...+ ..++++||+|+.|++.|++.+.. ..++.++.. +....++...
T Consensus 94 ~~~~~VLdiG~G~G~~~~~l~~~~~--~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~rv~v~~~-----Da~~~l~~~~ 166 (304)
T 2o07_A 94 PNPRKVLIIGGGDGGVLREVVKHPS--VESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVG-----DGFEFMKQNQ 166 (304)
T ss_dssp SSCCEEEEEECTTSHHHHHHTTCTT--CCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEES-----CHHHHHHTCS
T ss_pred CCCCEEEEECCCchHHHHHHHHcCC--CCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEEC-----cHHHHHhhCC
Confidence 3568999999999999988875432 46899999999999999987643 112222221 1211122235
Q ss_pred CcccEEeecccccCCCCH-HHHHHHHHHHHhc--cCCeEEEEcCCCCCc-hHHHHHHHHHH
Q 015771 103 REHDLVIASYVLGEVPSL-QDRITIVRQLWDL--TRDVLVLVEPGTPQG-SSIISQMRSHI 159 (400)
Q Consensus 103 ~~~DLVias~~L~eL~~~-~~r~~~i~~Lw~~--~gG~LVlVE~Gtp~G-f~~I~~aR~~l 159 (400)
++||+|++......-+.. ....++++++.+. +||.|++-. +++-. -..+..+++.+
T Consensus 167 ~~fD~Ii~d~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~-~~~~~~~~~~~~~~~~l 226 (304)
T 2o07_A 167 DAFDVIITDSSDPMGPAESLFKESYYQLMKTALKEDGVLCCQG-ECQWLHLDLIKEMRQFC 226 (304)
T ss_dssp SCEEEEEEECC-----------CHHHHHHHHHEEEEEEEEEEE-ECTTTCHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCCcchhhhHHHHHHHHHhccCCCeEEEEec-CCcccchHHHHHHHHHH
Confidence 689999985443221110 0112345555443 789888754 23322 23344444443
|
| >4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.51 E-value=1.7e-07 Score=93.22 Aligned_cols=99 Identities=17% Similarity=0.226 Sum_probs=61.9
Q ss_pred CCCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCC---CCceeechhhhHhhhhcccCCCcc
Q 015771 29 FSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKD---LPLIHSYNSIQALNKDISKSEREH 105 (400)
Q Consensus 29 ~~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~---~~~~~~~~~~~~l~~~l~~~~~~~ 105 (400)
|+.++|||||||+|.+++.+++. ...+|++||.|+ |.+.|+.+++.... +.+++. ++. .+. ..+++
T Consensus 82 ~~~k~VLDvG~GtGiLs~~Aa~a---GA~~V~ave~s~-~~~~a~~~~~~n~~~~~i~~i~~-----~~~-~~~-lpe~~ 150 (376)
T 4hc4_A 82 LRGKTVLDVGAGTGILSIFCAQA---GARRVYAVEASA-IWQQAREVVRFNGLEDRVHVLPG-----PVE-TVE-LPEQV 150 (376)
T ss_dssp HTTCEEEEETCTTSHHHHHHHHT---TCSEEEEEECST-THHHHHHHHHHTTCTTTEEEEES-----CTT-TCC-CSSCE
T ss_pred cCCCEEEEeCCCccHHHHHHHHh---CCCEEEEEeChH-HHHHHHHHHHHcCCCceEEEEee-----eee-eec-CCccc
Confidence 56689999999999887766642 346899999996 88999988764321 222221 111 122 23689
Q ss_pred cEEee---cccccCCCCHHHHHHHHHHHHhccCCeEE
Q 015771 106 DLVIA---SYVLGEVPSLQDRITIVRQLWDLTRDVLV 139 (400)
Q Consensus 106 DLVia---s~~L~eL~~~~~r~~~i~~Lw~~~gG~LV 139 (400)
|+||+ .+.|..-.....-+...+++++ |||.+|
T Consensus 151 DvivsE~~~~~l~~e~~l~~~l~a~~r~Lk-p~G~~i 186 (376)
T 4hc4_A 151 DAIVSEWMGYGLLHESMLSSVLHARTKWLK-EGGLLL 186 (376)
T ss_dssp EEEECCCCBTTBTTTCSHHHHHHHHHHHEE-EEEEEE
T ss_pred cEEEeecccccccccchhhhHHHHHHhhCC-CCceEC
Confidence 99998 4444333223344444555554 677655
|
| >2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1 | Back alignment and structure |
|---|
Probab=98.51 E-value=5e-07 Score=82.45 Aligned_cols=104 Identities=17% Similarity=0.220 Sum_probs=66.1
Q ss_pred CCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCC---CCCceeechhhhHhhhhcccC--CCc
Q 015771 30 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK---DLPLIHSYNSIQALNKDISKS--ERE 104 (400)
Q Consensus 30 ~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~---~~~~~~~~~~~~~l~~~l~~~--~~~ 104 (400)
.+.+|||+|||+|..+..++..++. ..+++++|.|+.|++.|+..++... ++.++.... ...+. .+... .++
T Consensus 69 ~~~~vLdiG~G~G~~~~~la~~~~~-~~~v~~vD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~-~~~~~-~~~~~~~~~~ 145 (229)
T 2avd_A 69 QAKKALDLGTFTGYSALALALALPA-DGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPA-LETLD-ELLAAGEAGT 145 (229)
T ss_dssp TCCEEEEECCTTSHHHHHHHTTSCT-TCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCH-HHHHH-HHHHTTCTTC
T ss_pred CCCEEEEEcCCccHHHHHHHHhCCC-CCEEEEEECCHHHHHHHHHHHHHCCCCCeEEEEEcCH-HHHHH-HHHhcCCCCC
Confidence 4579999999999999888877652 4699999999999999999876432 122222110 01111 11111 158
Q ss_pred ccEEeecccccCCCCHHHHHHHHHHHHhc--cCCeEEEEc
Q 015771 105 HDLVIASYVLGEVPSLQDRITIVRQLWDL--TRDVLVLVE 142 (400)
Q Consensus 105 ~DLVias~~L~eL~~~~~r~~~i~~Lw~~--~gG~LVlVE 142 (400)
||+|++.... ... ..+++.+.+. +||.||+.+
T Consensus 146 ~D~v~~d~~~---~~~---~~~l~~~~~~L~pgG~lv~~~ 179 (229)
T 2avd_A 146 FDVAVVDADK---ENC---SAYYERCLQLLRPGGILAVLR 179 (229)
T ss_dssp EEEEEECSCS---TTH---HHHHHHHHHHEEEEEEEEEEC
T ss_pred ccEEEECCCH---HHH---HHHHHHHHHHcCCCeEEEEEC
Confidence 9999986541 112 2344444442 799998854
|
| >1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7 | Back alignment and structure |
|---|
Probab=98.51 E-value=2.7e-07 Score=84.57 Aligned_cols=100 Identities=13% Similarity=0.156 Sum_probs=67.2
Q ss_pred CCeEEEEccchhHHHHHHHHHCCC----CCcEEEEEeCCHHHHHHHHHhhcCC-------CCCCceeechhhhHhhhhcc
Q 015771 31 PAKVLDFGAGTGSAFWALREVWPR----SLEKVNLVEPSQSMQRAGQSLMQGP-------KDLPLIHSYNSIQALNKDIS 99 (400)
Q Consensus 31 p~~VLDvG~G~Gt~~~Al~~~~~~----~~~~v~~vD~S~~ml~~a~~ll~~~-------~~~~~~~~~~~~~~l~~~l~ 99 (400)
..+|||+|||+|..+..+++.++. ...+|+++|.|+.|++.+++.+... .++.++.. +....++
T Consensus 85 ~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~-----d~~~~~~ 159 (227)
T 1r18_A 85 GARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVEG-----DGRKGYP 159 (227)
T ss_dssp TCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEES-----CGGGCCG
T ss_pred CCEEEEECCCccHHHHHHHHhcccccCCccCEEEEEEcCHHHHHHHHHHHHhcCccccCCCceEEEEC-----CcccCCC
Confidence 369999999999998887765531 0248999999999999999876532 12222221 1222221
Q ss_pred cCCCcccEEeecccccCCCCHHHHHHHHHHHHhccCCeEEEEcC
Q 015771 100 KSEREHDLVIASYVLGEVPSLQDRITIVRQLWDLTRDVLVLVEP 143 (400)
Q Consensus 100 ~~~~~~DLVias~~L~eL~~~~~r~~~i~~Lw~~~gG~LVlVE~ 143 (400)
...+||+|++..++.+++ ..+.+++ ++||.||+.-.
T Consensus 160 -~~~~fD~I~~~~~~~~~~------~~~~~~L-kpgG~lvi~~~ 195 (227)
T 1r18_A 160 -PNAPYNAIHVGAAAPDTP------TELINQL-ASGGRLIVPVG 195 (227)
T ss_dssp -GGCSEEEEEECSCBSSCC------HHHHHTE-EEEEEEEEEES
T ss_pred -cCCCccEEEECCchHHHH------HHHHHHh-cCCCEEEEEEe
Confidence 236899999999999886 1223333 37999988754
|
| >2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17 | Back alignment and structure |
|---|
Probab=98.51 E-value=3.2e-07 Score=89.16 Aligned_cols=123 Identities=16% Similarity=0.208 Sum_probs=70.2
Q ss_pred CCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCC-C--CCceeechhhhHhhhhcccCCCccc
Q 015771 30 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK-D--LPLIHSYNSIQALNKDISKSEREHD 106 (400)
Q Consensus 30 ~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~-~--~~~~~~~~~~~~l~~~l~~~~~~~D 106 (400)
.|.+|||+|||+|..+..++...+ ..+|++||+|+.|++.|++.+.... . .+.+... ..+....++...++||
T Consensus 108 ~~~~VLdIG~G~G~~~~~l~~~~~--~~~v~~vDid~~~i~~Ar~~~~~~~~~~~~~rv~~~--~~D~~~~l~~~~~~fD 183 (314)
T 2b2c_A 108 DPKRVLIIGGGDGGILREVLKHES--VEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLF--CGDGFEFLKNHKNEFD 183 (314)
T ss_dssp SCCEEEEESCTTSHHHHHHTTCTT--CCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEE--CSCHHHHHHHCTTCEE
T ss_pred CCCEEEEEcCCcCHHHHHHHHcCC--CCEEEEEECCHHHHHHHHHHHHHhccccCCCCEEEE--EChHHHHHHhcCCCce
Confidence 468999999999999988876443 4689999999999999999886431 0 1112110 1122111222346899
Q ss_pred EEeecccccCCCCHHHH--HHHHHHHHhc--cCCeEEEEcCCCCCc-hHHHHHHHHH
Q 015771 107 LVIASYVLGEVPSLQDR--ITIVRQLWDL--TRDVLVLVEPGTPQG-SSIISQMRSH 158 (400)
Q Consensus 107 LVias~~L~eL~~~~~r--~~~i~~Lw~~--~gG~LVlVE~Gtp~G-f~~I~~aR~~ 158 (400)
+|++.... .+...... .++++++.+. +||.|++-. |.+.. -..+..+++.
T Consensus 184 ~Ii~d~~~-~~~~~~~l~t~~~l~~~~~~LkpgG~lv~~~-~~~~~~~~~~~~~~~~ 238 (314)
T 2b2c_A 184 VIITDSSD-PVGPAESLFGQSYYELLRDALKEDGILSSQG-ESVWLHLPLIAHLVAF 238 (314)
T ss_dssp EEEECCC--------------HHHHHHHHEEEEEEEEEEC-CCTTTCHHHHHHHHHH
T ss_pred EEEEcCCC-CCCcchhhhHHHHHHHHHhhcCCCeEEEEEC-CCcccCHHHHHHHHHH
Confidence 99985432 22111111 3455555443 789888653 44432 2334444444
|
| >2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A* | Back alignment and structure |
|---|
Probab=98.50 E-value=3.3e-07 Score=87.60 Aligned_cols=108 Identities=14% Similarity=0.216 Sum_probs=66.5
Q ss_pred CCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCC---CCCceeechhhhHhhhhcccCCCccc
Q 015771 30 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK---DLPLIHSYNSIQALNKDISKSEREHD 106 (400)
Q Consensus 30 ~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~---~~~~~~~~~~~~~l~~~l~~~~~~~D 106 (400)
+|.+|||+|||+|..+..++...+ ..++++||+|+.|++.|++.+.... +.+.+... ..+....++...++||
T Consensus 78 ~~~~VLdiG~G~G~~~~~l~~~~~--~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~--~~D~~~~l~~~~~~fD 153 (283)
T 2i7c_A 78 EPKNVLVVGGGDGGIIRELCKYKS--VENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVF--IEDASKFLENVTNTYD 153 (283)
T ss_dssp SCCEEEEEECTTSHHHHHHTTCTT--CCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEE--ESCHHHHHHHCCSCEE
T ss_pred CCCeEEEEeCCcCHHHHHHHHcCC--CCEEEEEECCHHHHHHHHHHhHHhccccCCCcEEEE--ECChHHHHHhCCCCce
Confidence 568999999999999988875432 4689999999999999999876431 01211110 1112111222256899
Q ss_pred EEeecccccCCCCHHHH--HHHHHHHHhc--cCCeEEEEc
Q 015771 107 LVIASYVLGEVPSLQDR--ITIVRQLWDL--TRDVLVLVE 142 (400)
Q Consensus 107 LVias~~L~eL~~~~~r--~~~i~~Lw~~--~gG~LVlVE 142 (400)
+|++.......+ .... .++++.+.+. +||.|++.-
T Consensus 154 ~Ii~d~~~~~~~-~~~l~~~~~l~~~~~~L~pgG~lv~~~ 192 (283)
T 2i7c_A 154 VIIVDSSDPIGP-AETLFNQNFYEKIYNALKPNGYCVAQC 192 (283)
T ss_dssp EEEEECCCTTTG-GGGGSSHHHHHHHHHHEEEEEEEEEEC
T ss_pred EEEEcCCCCCCc-chhhhHHHHHHHHHHhcCCCcEEEEEC
Confidence 999854332211 1111 2444444442 799998763
|
| >3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP} | Back alignment and structure |
|---|
Probab=98.50 E-value=5.2e-07 Score=83.29 Aligned_cols=105 Identities=13% Similarity=0.150 Sum_probs=67.8
Q ss_pred CCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCC---CCceeechhhhHhhhhcccCC--Cc
Q 015771 30 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKD---LPLIHSYNSIQALNKDISKSE--RE 104 (400)
Q Consensus 30 ~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~---~~~~~~~~~~~~l~~~l~~~~--~~ 104 (400)
.+.+|||+|||+|..+..++..++. ..+++++|.|+.+++.|+..++.... +.++.... ...+. .++... ++
T Consensus 72 ~~~~vLdiG~G~G~~~~~la~~~~~-~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~-~~~l~-~l~~~~~~~~ 148 (232)
T 3cbg_A 72 GAKQVLEIGVFRGYSALAMALQLPP-DGQIIACDQDPNATAIAKKYWQKAGVAEKISLRLGPA-LATLE-QLTQGKPLPE 148 (232)
T ss_dssp TCCEEEEECCTTSHHHHHHHTTSCT-TCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCH-HHHHH-HHHTSSSCCC
T ss_pred CCCEEEEecCCCCHHHHHHHHhCCC-CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCH-HHHHH-HHHhcCCCCC
Confidence 4579999999999999888877652 46899999999999999988753221 11222110 01111 122122 68
Q ss_pred ccEEeecccccCCCCHHHHHHHHHHHHhc--cCCeEEEEcC
Q 015771 105 HDLVIASYVLGEVPSLQDRITIVRQLWDL--TRDVLVLVEP 143 (400)
Q Consensus 105 ~DLVias~~L~eL~~~~~r~~~i~~Lw~~--~gG~LVlVE~ 143 (400)
||+|++.... .....+++++++. +||.||+-+.
T Consensus 149 fD~V~~d~~~------~~~~~~l~~~~~~LkpgG~lv~~~~ 183 (232)
T 3cbg_A 149 FDLIFIDADK------RNYPRYYEIGLNLLRRGGLMVIDNV 183 (232)
T ss_dssp EEEEEECSCG------GGHHHHHHHHHHTEEEEEEEEEECT
T ss_pred cCEEEECCCH------HHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 9999977542 2234456666554 7999887543
|
| >3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=98.50 E-value=1e-06 Score=85.59 Aligned_cols=112 Identities=13% Similarity=0.224 Sum_probs=68.6
Q ss_pred CCCCCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCCCCceeechhhhHhhhhcc-cCCCcc
Q 015771 27 PGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDIS-KSEREH 105 (400)
Q Consensus 27 p~~~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~~~~~~~~~~~~~l~~~l~-~~~~~~ 105 (400)
|.-+|.+|||+|||+|..+..+.+.++. .++++||+++.|+++|++.+.... .+.+... ..+....+. ...++|
T Consensus 86 p~p~~~rVLdIG~G~G~la~~la~~~p~--~~v~~VEidp~vi~~Ar~~~~~~~-~~rv~v~--~~Da~~~l~~~~~~~f 160 (317)
T 3gjy_A 86 QDASKLRITHLGGGACTMARYFADVYPQ--SRNTVVELDAELARLSREWFDIPR-APRVKIR--VDDARMVAESFTPASR 160 (317)
T ss_dssp SCGGGCEEEEESCGGGHHHHHHHHHSTT--CEEEEEESCHHHHHHHHHHSCCCC-TTTEEEE--ESCHHHHHHTCCTTCE
T ss_pred CCCCCCEEEEEECCcCHHHHHHHHHCCC--cEEEEEECCHHHHHHHHHhccccC-CCceEEE--ECcHHHHHhhccCCCC
Confidence 4434559999999999999999988873 389999999999999999886421 1212110 111111111 134689
Q ss_pred cEEeecccccCC-CCHHHHHHHHHHHHhc--cCCeEEEEcC
Q 015771 106 DLVIASYVLGEV-PSLQDRITIVRQLWDL--TRDVLVLVEP 143 (400)
Q Consensus 106 DLVias~~L~eL-~~~~~r~~~i~~Lw~~--~gG~LVlVE~ 143 (400)
|+||+......- +......++++.+.+. +||+|++.-.
T Consensus 161 DvIi~D~~~~~~~~~~L~t~efl~~~~r~LkpgGvlv~~~~ 201 (317)
T 3gjy_A 161 DVIIRDVFAGAITPQNFTTVEFFEHCHRGLAPGGLYVANCG 201 (317)
T ss_dssp EEEEECCSTTSCCCGGGSBHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CEEEECCCCccccchhhhHHHHHHHHHHhcCCCcEEEEEec
Confidence 999985433221 1110012344444432 7999887654
|
| >3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E* | Back alignment and structure |
|---|
Probab=98.50 E-value=4.1e-07 Score=84.66 Aligned_cols=106 Identities=17% Similarity=0.113 Sum_probs=61.7
Q ss_pred CCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCCCCceeechhhhHhhhhcccCCCcccEEee
Q 015771 31 PAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDISKSEREHDLVIA 110 (400)
Q Consensus 31 p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~~~~~~~~~~~~~l~~~l~~~~~~~DLVia 110 (400)
..+|||+|||||..+..+++..+. ..+|+++|.|+.|++......+...|+..+..... ... ......++||+|++
T Consensus 77 g~~VLDlG~GtG~~t~~la~~v~~-~G~V~avD~s~~~l~~l~~~a~~r~nv~~i~~Da~--~~~-~~~~~~~~~D~I~~ 152 (232)
T 3id6_C 77 GTKVLYLGAASGTTISHVSDIIEL-NGKAYGVEFSPRVVRELLLVAQRRPNIFPLLADAR--FPQ-SYKSVVENVDVLYV 152 (232)
T ss_dssp TCEEEEETCTTSHHHHHHHHHHTT-TSEEEEEECCHHHHHHHHHHHHHCTTEEEEECCTT--CGG-GTTTTCCCEEEEEE
T ss_pred CCEEEEEeecCCHHHHHHHHHhCC-CCEEEEEECcHHHHHHHHHHhhhcCCeEEEEcccc--cch-hhhccccceEEEEe
Confidence 379999999999998888877652 46899999999986433333322234332222110 000 00112358999998
Q ss_pred cccccCCCCHHHH-HHHHHHHHhccCCeEEEEcCC
Q 015771 111 SYVLGEVPSLQDR-ITIVRQLWDLTRDVLVLVEPG 144 (400)
Q Consensus 111 s~~L~eL~~~~~r-~~~i~~Lw~~~gG~LVlVE~G 144 (400)
..++ ++.... ...+..++ ++||.||++...
T Consensus 153 d~a~---~~~~~il~~~~~~~L-kpGG~lvisik~ 183 (232)
T 3id6_C 153 DIAQ---PDQTDIAIYNAKFFL-KVNGDMLLVIKA 183 (232)
T ss_dssp CCCC---TTHHHHHHHHHHHHE-EEEEEEEEEEC-
T ss_pred cCCC---hhHHHHHHHHHHHhC-CCCeEEEEEEcc
Confidence 7553 322211 11222233 389999988543
|
| >2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=98.49 E-value=3.2e-07 Score=83.75 Aligned_cols=102 Identities=16% Similarity=0.166 Sum_probs=69.1
Q ss_pred CCeEEEEccchhHHHHHHHHHCCC---CCcEEEEEeCCHHHHHHHHHhhcCCC-------CCCceeechhhhHhhhhcc-
Q 015771 31 PAKVLDFGAGTGSAFWALREVWPR---SLEKVNLVEPSQSMQRAGQSLMQGPK-------DLPLIHSYNSIQALNKDIS- 99 (400)
Q Consensus 31 p~~VLDvG~G~Gt~~~Al~~~~~~---~~~~v~~vD~S~~ml~~a~~ll~~~~-------~~~~~~~~~~~~~l~~~l~- 99 (400)
+.+|||+|||+|..+..++...+. ...+|+++|.|+.|++.|+..+.... ++.++.. +.....+
T Consensus 81 ~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~-----d~~~~~~~ 155 (227)
T 2pbf_A 81 GSRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLENIKRDKPELLKIDNFKIIHK-----NIYQVNEE 155 (227)
T ss_dssp TCEEEEESCTTSHHHHHHHHHTTTTTCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGSSTTEEEEEC-----CGGGCCHH
T ss_pred CCEEEEECCCCCHHHHHHHHHhcccCCCCCEEEEEeCCHHHHHHHHHHHHHcCccccccCCEEEEEC-----ChHhcccc
Confidence 479999999999998888876630 13489999999999999998875421 2222221 1211110
Q ss_pred --cCCCcccEEeecccccCCCCHHHHHHHHHHHHhccCCeEEEEcCC
Q 015771 100 --KSEREHDLVIASYVLGEVPSLQDRITIVRQLWDLTRDVLVLVEPG 144 (400)
Q Consensus 100 --~~~~~~DLVias~~L~eL~~~~~r~~~i~~Lw~~~gG~LVlVE~G 144 (400)
...++||+|++...+.++. ..+.+++ ++||.||+.-+.
T Consensus 156 ~~~~~~~fD~I~~~~~~~~~~------~~~~~~L-kpgG~lv~~~~~ 195 (227)
T 2pbf_A 156 EKKELGLFDAIHVGASASELP------EILVDLL-AENGKLIIPIEE 195 (227)
T ss_dssp HHHHHCCEEEEEECSBBSSCC------HHHHHHE-EEEEEEEEEEEE
T ss_pred cCccCCCcCEEEECCchHHHH------HHHHHhc-CCCcEEEEEEcc
Confidence 1235799999999998875 2233444 379999988664
|
| >2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=98.49 E-value=8.9e-07 Score=81.59 Aligned_cols=109 Identities=17% Similarity=0.153 Sum_probs=68.1
Q ss_pred HHHCCCCCCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCCCCceeechhhhHhhhhcccCC
Q 015771 23 ARRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDISKSE 102 (400)
Q Consensus 23 ~~rlp~~~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~~~~~~~~~~~~~l~~~l~~~~ 102 (400)
...+....+.+|||+|||+|..+..++.. ..+++++|.|+.|++.|+..+....-...+... ..++.... ...
T Consensus 84 ~~~~~~~~~~~vldiG~G~G~~~~~l~~~----~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~--~~d~~~~~-~~~ 156 (248)
T 2yvl_A 84 ALKLNLNKEKRVLEFGTGSGALLAVLSEV----AGEVWTFEAVEEFYKTAQKNLKKFNLGKNVKFF--NVDFKDAE-VPE 156 (248)
T ss_dssp HHHTTCCTTCEEEEECCTTSHHHHHHHHH----SSEEEEECSCHHHHHHHHHHHHHTTCCTTEEEE--CSCTTTSC-CCT
T ss_pred HHhcCCCCCCEEEEeCCCccHHHHHHHHh----CCEEEEEecCHHHHHHHHHHHHHcCCCCcEEEE--EcChhhcc-cCC
Confidence 33333334579999999999998887765 358999999999999999887543210111110 11222111 134
Q ss_pred CcccEEeecccccCCCCHHHHHHHHHHHHhccCCeEEEEcCC
Q 015771 103 REHDLVIASYVLGEVPSLQDRITIVRQLWDLTRDVLVLVEPG 144 (400)
Q Consensus 103 ~~~DLVias~~L~eL~~~~~r~~~i~~Lw~~~gG~LVlVE~G 144 (400)
..||+|++. .++.......+.+++ ++||.++++.+.
T Consensus 157 ~~~D~v~~~-----~~~~~~~l~~~~~~L-~~gG~l~~~~~~ 192 (248)
T 2yvl_A 157 GIFHAAFVD-----VREPWHYLEKVHKSL-MEGAPVGFLLPT 192 (248)
T ss_dssp TCBSEEEEC-----SSCGGGGHHHHHHHB-CTTCEEEEEESS
T ss_pred CcccEEEEC-----CcCHHHHHHHHHHHc-CCCCEEEEEeCC
Confidence 579999973 333333333344444 379999999874
|
| >2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.48 E-value=1.1e-06 Score=77.89 Aligned_cols=116 Identities=13% Similarity=0.063 Sum_probs=64.2
Q ss_pred HHHHHCCCCC-CCeEEEEccchhHHHHHHHHHCCCC-------CcEEEEEeCCHHHHHHHHHhhcCCCCCCce-eechhh
Q 015771 21 SFARRLPGFS-PAKVLDFGAGTGSAFWALREVWPRS-------LEKVNLVEPSQSMQRAGQSLMQGPKDLPLI-HSYNSI 91 (400)
Q Consensus 21 el~~rlp~~~-p~~VLDvG~G~Gt~~~Al~~~~~~~-------~~~v~~vD~S~~ml~~a~~ll~~~~~~~~~-~~~~~~ 91 (400)
++..+...++ +.+|||+|||+|..+..++..++.. ..+++++|.|+.+ ...+...+ ......
T Consensus 12 ~l~~~~~~~~~~~~vLDlGcG~G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~~~---------~~~~~~~~~~~d~~~ 82 (196)
T 2nyu_A 12 EVNERHQILRPGLRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHIF---------PLEGATFLCPADVTD 82 (196)
T ss_dssp HHHHHHCCCCTTCEEEEETCCSCHHHHHHHHHTTTTCCCTTSCCCEEEEECSSCCC---------CCTTCEEECSCCTTS
T ss_pred HHHHhcCCCCCCCEEEEeCCCCCHHHHHHHHHhccccccccCCCceEEEEechhcc---------cCCCCeEEEeccCCC
Confidence 4444433333 4699999999999999988887521 1589999999832 01122222 111000
Q ss_pred hHhhhhc--ccCCCcccEEeecccccCCCCH-HHH-------HHHHHHHHhc--cCCeEEEEcCCC
Q 015771 92 QALNKDI--SKSEREHDLVIASYVLGEVPSL-QDR-------ITIVRQLWDL--TRDVLVLVEPGT 145 (400)
Q Consensus 92 ~~l~~~l--~~~~~~~DLVias~~L~eL~~~-~~r-------~~~i~~Lw~~--~gG~LVlVE~Gt 145 (400)
......+ ....++||+|++..+++..... .+. ..++.++.+. +||.|++.....
T Consensus 83 ~~~~~~~~~~~~~~~fD~V~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~ 148 (196)
T 2nyu_A 83 PRTSQRILEVLPGRRADVILSDMAPNATGFRDLDHDRLISLCLTLLSVTPDILQPGGTFLCKTWAG 148 (196)
T ss_dssp HHHHHHHHHHSGGGCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEECCS
T ss_pred HHHHHHHHHhcCCCCCcEEEeCCCCCCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCEEEEEecCC
Confidence 0000000 0123579999997655443221 111 2445555543 899999887644
|
| >1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32 | Back alignment and structure |
|---|
Probab=98.48 E-value=1.3e-06 Score=78.44 Aligned_cols=99 Identities=16% Similarity=0.194 Sum_probs=65.5
Q ss_pred CCCCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCC-CCCceeechhhhHhhhhcccCCCccc
Q 015771 28 GFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK-DLPLIHSYNSIQALNKDISKSEREHD 106 (400)
Q Consensus 28 ~~~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~-~~~~~~~~~~~~~l~~~l~~~~~~~D 106 (400)
...+.+|||+|||+|..+.+++.. ...+++++|.|+.|++.++..+.... ++.++.. +.. .+ ..+||
T Consensus 47 ~~~~~~vlD~g~G~G~~~~~l~~~---~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~-----d~~-~~---~~~~D 114 (207)
T 1wy7_A 47 DIEGKVVADLGAGTGVLSYGALLL---GAKEVICVEVDKEAVDVLIENLGEFKGKFKVFIG-----DVS-EF---NSRVD 114 (207)
T ss_dssp SSTTCEEEEETCTTCHHHHHHHHT---TCSEEEEEESCHHHHHHHHHHTGGGTTSEEEEES-----CGG-GC---CCCCS
T ss_pred CCCcCEEEEeeCCCCHHHHHHHHc---CCCEEEEEECCHHHHHHHHHHHHHcCCCEEEEEC-----chH-Hc---CCCCC
Confidence 345679999999999998887754 13489999999999999999876432 2222211 122 12 24899
Q ss_pred EEeecccccCCCCHHHHHHHHHHHHhccCCeEE
Q 015771 107 LVIASYVLGEVPSLQDRITIVRQLWDLTRDVLV 139 (400)
Q Consensus 107 LVias~~L~eL~~~~~r~~~i~~Lw~~~gG~LV 139 (400)
+|++...++.... .....+++.+.+..|+.++
T Consensus 115 ~v~~~~p~~~~~~-~~~~~~l~~~~~~l~~~~~ 146 (207)
T 1wy7_A 115 IVIMNPPFGSQRK-HADRPFLLKAFEISDVVYS 146 (207)
T ss_dssp EEEECCCCSSSST-TTTHHHHHHHHHHCSEEEE
T ss_pred EEEEcCCCccccC-CchHHHHHHHHHhcCcEEE
Confidence 9999877766542 2234566666655444443
|
| >2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E | Back alignment and structure |
|---|
Probab=98.47 E-value=3.7e-07 Score=84.94 Aligned_cols=45 Identities=16% Similarity=0.226 Sum_probs=38.9
Q ss_pred CCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhc
Q 015771 31 PAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQ 77 (400)
Q Consensus 31 p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~ 77 (400)
+.+|||+|||+|..+..++...+ ...|++||+|+.|++.++..+.
T Consensus 50 ~~~vLDiGcG~G~~~~~la~~~~--~~~v~gvD~s~~~l~~a~~~~~ 94 (246)
T 2vdv_E 50 KVTIADIGCGFGGLMIDLSPAFP--EDLILGMEIRVQVTNYVEDRII 94 (246)
T ss_dssp CEEEEEETCTTSHHHHHHHHHST--TSEEEEEESCHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCHHHHHHHHhCC--CCCEEEEEcCHHHHHHHHHHHH
Confidence 46899999999999999888775 3589999999999999987664
|
| >2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=98.47 E-value=3.5e-07 Score=89.11 Aligned_cols=101 Identities=14% Similarity=0.134 Sum_probs=63.3
Q ss_pred CCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCC-------------CCCCceeechhhhHhhh
Q 015771 30 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGP-------------KDLPLIHSYNSIQALNK 96 (400)
Q Consensus 30 ~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~-------------~~~~~~~~~~~~~~l~~ 96 (400)
.+.+|||+|||+|..+++++...+ ...+++++|.|+.|++.|++.+... .++.++. .++..
T Consensus 105 ~g~~VLDiG~G~G~~~~~la~~~g-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~ln~~~~~~~~v~~~~-----~d~~~ 178 (336)
T 2b25_A 105 PGDTVLEAGSGSGGMSLFLSKAVG-SQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIH-----KDISG 178 (336)
T ss_dssp TTCEEEEECCTTSHHHHHHHHHHC-TTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEE-----SCTTC
T ss_pred CCCEEEEeCCCcCHHHHHHHHHhC-CCceEEEEeCCHHHHHHHHHHHHHhhcccccccccccCCceEEEE-----CChHH
Confidence 457999999999999998887653 2368999999999999999887531 1221111 12221
Q ss_pred hc-ccCCCcccEEeecccccCCCCHHHHHHHHHHHHhc--cCCeEEEEcCC
Q 015771 97 DI-SKSEREHDLVIASYVLGEVPSLQDRITIVRQLWDL--TRDVLVLVEPG 144 (400)
Q Consensus 97 ~l-~~~~~~~DLVias~~L~eL~~~~~r~~~i~~Lw~~--~gG~LVlVE~G 144 (400)
.. +...+.||+|++... .+.. ++..+.+. +||.|++..+.
T Consensus 179 ~~~~~~~~~fD~V~~~~~-----~~~~---~l~~~~~~LkpgG~lv~~~~~ 221 (336)
T 2b25_A 179 ATEDIKSLTFDAVALDML-----NPHV---TLPVFYPHLKHGGVCAVYVVN 221 (336)
T ss_dssp CC-------EEEEEECSS-----STTT---THHHHGGGEEEEEEEEEEESS
T ss_pred cccccCCCCeeEEEECCC-----CHHH---HHHHHHHhcCCCcEEEEEeCC
Confidence 11 123457999998532 1211 34444432 79999988773
|
| >1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A* | Back alignment and structure |
|---|
Probab=98.46 E-value=1.7e-07 Score=91.06 Aligned_cols=105 Identities=16% Similarity=0.187 Sum_probs=67.5
Q ss_pred CCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcC-------CCCCCceeechhhhHhhhhcccCC
Q 015771 30 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQG-------PKDLPLIHSYNSIQALNKDISKSE 102 (400)
Q Consensus 30 ~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~-------~~~~~~~~~~~~~~~l~~~l~~~~ 102 (400)
.|.+|||+|||+|..+..++...+ ..++++||+|+.|++.|++.+.. ..++.++.. +....++...
T Consensus 77 ~~~~VLdiG~G~G~~~~~l~~~~~--~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~~~v~~~~~-----D~~~~l~~~~ 149 (314)
T 1uir_A 77 EPKRVLIVGGGEGATLREVLKHPT--VEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVID-----DARAYLERTE 149 (314)
T ss_dssp CCCEEEEEECTTSHHHHHHTTSTT--CCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEES-----CHHHHHHHCC
T ss_pred CCCeEEEEcCCcCHHHHHHHhcCC--CCEEEEEECCHHHHHHHHHHhHhhccccccCCceEEEEc-----hHHHHHHhcC
Confidence 468999999999999988876443 46899999999999999987642 112222221 1221122235
Q ss_pred CcccEEeecccccC-CCCH-HH--HHHHHHHHHhc--cCCeEEEE
Q 015771 103 REHDLVIASYVLGE-VPSL-QD--RITIVRQLWDL--TRDVLVLV 141 (400)
Q Consensus 103 ~~~DLVias~~L~e-L~~~-~~--r~~~i~~Lw~~--~gG~LVlV 141 (400)
++||+|++...... +... .. ..++++.+.+. +||.|++.
T Consensus 150 ~~fD~Ii~d~~~~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~ 194 (314)
T 1uir_A 150 ERYDVVIIDLTDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQ 194 (314)
T ss_dssp CCEEEEEEECCCCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEE
T ss_pred CCccEEEECCCCcccccCcchhccHHHHHHHHHHhcCCCcEEEEE
Confidence 68999999765543 1111 11 23455555553 79998875
|
| >1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17 | Back alignment and structure |
|---|
Probab=98.45 E-value=5.3e-07 Score=85.85 Aligned_cols=107 Identities=17% Similarity=0.219 Sum_probs=64.2
Q ss_pred CCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCC---CCCCceeechhhhHhhhhcccCCCccc
Q 015771 30 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGP---KDLPLIHSYNSIQALNKDISKSEREHD 106 (400)
Q Consensus 30 ~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~---~~~~~~~~~~~~~~l~~~l~~~~~~~D 106 (400)
.|.+|||+|||+|..+..+....+ ..++++||+++.|++.|++.+... -+.+.+... ..+....++...++||
T Consensus 75 ~~~~VLdiG~G~G~~~~~l~~~~~--~~~v~~vEid~~~v~~ar~~~~~~~~~~~~~rv~v~--~~D~~~~l~~~~~~fD 150 (275)
T 1iy9_A 75 NPEHVLVVGGGDGGVIREILKHPS--VKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQ--VDDGFMHIAKSENQYD 150 (275)
T ss_dssp SCCEEEEESCTTCHHHHHHTTCTT--CSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEE--ESCSHHHHHTCCSCEE
T ss_pred CCCEEEEECCchHHHHHHHHhCCC--CceEEEEECCHHHHHHHHHHhHhhccccCCCceEEE--ECcHHHHHhhCCCCee
Confidence 578999999999999888775432 468999999999999999877321 011212110 1111111222346899
Q ss_pred EEeecccccCCCC----HHHHHHHHHHHHhccCCeEEEE
Q 015771 107 LVIASYVLGEVPS----LQDRITIVRQLWDLTRDVLVLV 141 (400)
Q Consensus 107 LVias~~L~eL~~----~~~r~~~i~~Lw~~~gG~LVlV 141 (400)
+|++.-.....+. ..+-...+.++++ +||.|++-
T Consensus 151 ~Ii~d~~~~~~~~~~l~~~~~~~~~~~~L~-pgG~lv~~ 188 (275)
T 1iy9_A 151 VIMVDSTEPVGPAVNLFTKGFYAGIAKALK-EDGIFVAQ 188 (275)
T ss_dssp EEEESCSSCCSCCCCCSTTHHHHHHHHHEE-EEEEEEEE
T ss_pred EEEECCCCCCCcchhhhHHHHHHHHHHhcC-CCcEEEEE
Confidence 9998543321110 1122333334432 78988875
|
| >3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=98.45 E-value=2.1e-07 Score=89.43 Aligned_cols=101 Identities=10% Similarity=0.037 Sum_probs=61.8
Q ss_pred CCCCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCCCCceeechhhhHhh-hhcccCCCccc
Q 015771 28 GFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALN-KDISKSEREHD 106 (400)
Q Consensus 28 ~~~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~~~~~~~~~~~~~l~-~~l~~~~~~~D 106 (400)
+..+.+|||+|||||..+..+++. ...+|++||.|+.|++.+.+.-.+ ..... ..++..+. ..+ +...||
T Consensus 83 ~~~g~~vLDiGcGTG~~t~~L~~~---ga~~V~aVDvs~~mL~~a~r~~~r---v~~~~-~~ni~~l~~~~l--~~~~fD 153 (291)
T 3hp7_A 83 SVEDMITIDIGASTGGFTDVMLQN---GAKLVYAVDVGTNQLVWKLRQDDR---VRSME-QYNFRYAEPVDF--TEGLPS 153 (291)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHT---TCSEEEEECSSSSCSCHHHHTCTT---EEEEC-SCCGGGCCGGGC--TTCCCS
T ss_pred CccccEEEecCCCccHHHHHHHhC---CCCEEEEEECCHHHHHHHHHhCcc---cceec-ccCceecchhhC--CCCCCC
Confidence 345579999999999998776653 246899999999999875432111 00000 00011111 112 223599
Q ss_pred EEeecccccCCCCHHHHHHHHHHHHhccCCeEEEE
Q 015771 107 LVIASYVLGEVPSLQDRITIVRQLWDLTRDVLVLV 141 (400)
Q Consensus 107 LVias~~L~eL~~~~~r~~~i~~Lw~~~gG~LVlV 141 (400)
+|++..++..+. .-+.-+.+++ +|||.||++
T Consensus 154 ~v~~d~sf~sl~---~vL~e~~rvL-kpGG~lv~l 184 (291)
T 3hp7_A 154 FASIDVSFISLN---LILPALAKIL-VDGGQVVAL 184 (291)
T ss_dssp EEEECCSSSCGG---GTHHHHHHHS-CTTCEEEEE
T ss_pred EEEEEeeHhhHH---HHHHHHHHHc-CcCCEEEEE
Confidence 999988887652 2233444444 389999887
|
| >1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A* | Back alignment and structure |
|---|
Probab=98.44 E-value=8.9e-07 Score=84.65 Aligned_cols=104 Identities=15% Similarity=0.251 Sum_probs=67.2
Q ss_pred CCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCC--C-CCceeechhhhHhhhhcccCCCcc--
Q 015771 31 PAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK--D-LPLIHSYNSIQALNKDISKSEREH-- 105 (400)
Q Consensus 31 p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~--~-~~~~~~~~~~~~l~~~l~~~~~~~-- 105 (400)
+.+|||+|||+|..+.+++.. + ..+++++|.|+.|++.|+..+.... + +.++.. ++...+ .++|
T Consensus 124 ~~~vLDlG~GsG~~~~~la~~-~--~~~v~~vDis~~al~~A~~n~~~~~l~~~v~~~~~-----D~~~~~---~~~f~~ 192 (284)
T 1nv8_A 124 IKTVADIGTGSGAIGVSVAKF-S--DAIVFATDVSSKAVEIARKNAERHGVSDRFFVRKG-----EFLEPF---KEKFAS 192 (284)
T ss_dssp CCEEEEESCTTSHHHHHHHHH-S--SCEEEEEESCHHHHHHHHHHHHHTTCTTSEEEEES-----STTGGG---GGGTTT
T ss_pred CCEEEEEeCchhHHHHHHHHC-C--CCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEEC-----cchhhc---ccccCC
Confidence 369999999999999988876 4 3689999999999999999876432 1 222221 222112 1468
Q ss_pred -cEEeec------------ccccCCCCH-----HHHHHHHHHHH-hc--cCCeEEEEcCCCCC
Q 015771 106 -DLVIAS------------YVLGEVPSL-----QDRITIVRQLW-DL--TRDVLVLVEPGTPQ 147 (400)
Q Consensus 106 -DLVias------------~~L~eL~~~-----~~r~~~i~~Lw-~~--~gG~LVlVE~Gtp~ 147 (400)
|+|+++ .++ +-|.. .+...+++++. +. +||.|++ |.|...
T Consensus 193 ~D~IvsnPPyi~~~~~l~~~v~-~ep~~al~~~~dgl~~~~~i~~~~l~pgG~l~~-e~~~~q 253 (284)
T 1nv8_A 193 IEMILSNPPYVKSSAHLPKDVL-FEPPEALFGGEDGLDFYREFFGRYDTSGKIVLM-EIGEDQ 253 (284)
T ss_dssp CCEEEECCCCBCGGGSCTTSCC-CSCHHHHBCTTTSCHHHHHHHHHCCCTTCEEEE-ECCTTC
T ss_pred CCEEEEcCCCCCcccccChhhc-cCcHHHhcCCCcHHHHHHHHHHhcCCCCCEEEE-EECchH
Confidence 999996 122 11100 01125677777 53 7898885 666544
|
| >2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=98.43 E-value=1.5e-06 Score=77.43 Aligned_cols=35 Identities=20% Similarity=0.127 Sum_probs=29.9
Q ss_pred CeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCH
Q 015771 32 AKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQ 66 (400)
Q Consensus 32 ~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~ 66 (400)
.+|||+|||+|..+..+++.++....+|+++|.|+
T Consensus 24 ~~vLDlGcG~G~~~~~l~~~~~~~~~~v~gvD~s~ 58 (201)
T 2plw_A 24 KIILDIGCYPGSWCQVILERTKNYKNKIIGIDKKI 58 (201)
T ss_dssp EEEEEESCTTCHHHHHHHHHTTTSCEEEEEEESSC
T ss_pred CEEEEeCCCCCHHHHHHHHHcCCCCceEEEEeCCc
Confidence 68999999999999998887752146899999998
|
| >1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A* | Back alignment and structure |
|---|
Probab=98.43 E-value=5.7e-07 Score=85.76 Aligned_cols=120 Identities=18% Similarity=0.188 Sum_probs=69.6
Q ss_pred CCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCC----------CCCceeechhhhHhhhhcc
Q 015771 30 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK----------DLPLIHSYNSIQALNKDIS 99 (400)
Q Consensus 30 ~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~----------~~~~~~~~~~~~~l~~~l~ 99 (400)
.+.+|||+|||+|..+..++.. + ..++++||+|+.|++.|++.+ ... ..+.+... ..+....+.
T Consensus 75 ~~~~VLdiG~G~G~~~~~l~~~-~--~~~v~~vDid~~~i~~ar~~~-~~~~~l~~~~~~~~~~~v~~~--~~D~~~~l~ 148 (281)
T 1mjf_A 75 KPKRVLVIGGGDGGTVREVLQH-D--VDEVIMVEIDEDVIMVSKDLI-KIDNGLLEAMLNGKHEKAKLT--IGDGFEFIK 148 (281)
T ss_dssp CCCEEEEEECTTSHHHHHHTTS-C--CSEEEEEESCHHHHHHHHHHT-CTTTTHHHHHHTTCCSSEEEE--ESCHHHHHH
T ss_pred CCCeEEEEcCCcCHHHHHHHhC-C--CCEEEEEECCHHHHHHHHHHH-hhccccccccccCCCCcEEEE--ECchHHHhc
Confidence 5689999999999998887754 3 468999999999999999887 331 11212111 111111122
Q ss_pred cCCCcccEEeecccccCCCCHHH--HHHHHHHHHhc--cCCeEEEEcCCCCC-chHHHHHHHHH
Q 015771 100 KSEREHDLVIASYVLGEVPSLQD--RITIVRQLWDL--TRDVLVLVEPGTPQ-GSSIISQMRSH 158 (400)
Q Consensus 100 ~~~~~~DLVias~~L~eL~~~~~--r~~~i~~Lw~~--~gG~LVlVE~Gtp~-Gf~~I~~aR~~ 158 (400)
. .++||+|++......-+ ... ..++++.+.+. +||.|++. .+.+. .-+.+..+++.
T Consensus 149 ~-~~~fD~Ii~d~~~~~~~-~~~l~~~~~l~~~~~~L~pgG~lv~~-~~~~~~~~~~~~~~~~~ 209 (281)
T 1mjf_A 149 N-NRGFDVIIADSTDPVGP-AKVLFSEEFYRYVYDALNNPGIYVTQ-AGSVYLFTDELISAYKE 209 (281)
T ss_dssp H-CCCEEEEEEECCCCC------TTSHHHHHHHHHHEEEEEEEEEE-EEETTTSHHHHHHHHHH
T ss_pred c-cCCeeEEEECCCCCCCc-chhhhHHHHHHHHHHhcCCCcEEEEE-cCCcccCHHHHHHHHHH
Confidence 2 46899999865432111 111 13445555443 79988875 23332 22344444444
|
| >3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A* | Back alignment and structure |
|---|
Probab=98.42 E-value=3.8e-07 Score=85.13 Aligned_cols=100 Identities=15% Similarity=0.145 Sum_probs=65.7
Q ss_pred CCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCCCCceeechhhhHhhhhcccCCCcccEEe
Q 015771 30 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDISKSEREHDLVI 109 (400)
Q Consensus 30 ~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~~~~~~~~~~~~~l~~~l~~~~~~~DLVi 109 (400)
.|.+|||+|||+|.+++++. ....|+++|+|+.|++.++..+.... .+.... +.++.. ....++||+|+
T Consensus 105 ~p~~VLDlGCG~gpLal~~~-----~~~~y~a~DId~~~i~~ar~~~~~~g-~~~~~~---v~D~~~--~~~~~~~DvvL 173 (253)
T 3frh_A 105 TPRRVLDIACGLNPLALYER-----GIASVWGCDIHQGLGDVITPFAREKD-WDFTFA---LQDVLC--APPAEAGDLAL 173 (253)
T ss_dssp CCSEEEEETCTTTHHHHHHT-----TCSEEEEEESBHHHHHHHHHHHHHTT-CEEEEE---ECCTTT--SCCCCBCSEEE
T ss_pred CCCeEEEecCCccHHHHHhc-----cCCeEEEEeCCHHHHHHHHHHHHhcC-CCceEE---Eeeccc--CCCCCCcchHH
Confidence 57899999999999988766 35799999999999999999875432 221111 122221 12456899999
Q ss_pred ecccccCCCCHHHHHHHHHHHHhc--cCCeEEEEc
Q 015771 110 ASYVLGEVPSLQDRITIVRQLWDL--TRDVLVLVE 142 (400)
Q Consensus 110 as~~L~eL~~~~~r~~~i~~Lw~~--~gG~LVlVE 142 (400)
+.-+++.|.+ .++.... +++.. ++|++|-+.
T Consensus 174 llk~lh~LE~-q~~~~~~-~ll~aL~~~~vvVsfP 206 (253)
T 3frh_A 174 IFKLLPLLER-EQAGSAM-ALLQSLNTPRMAVSFP 206 (253)
T ss_dssp EESCHHHHHH-HSTTHHH-HHHHHCBCSEEEEEEE
T ss_pred HHHHHHHhhh-hchhhHH-HHHHHhcCCCEEEEcC
Confidence 9988888842 2222222 33332 455555554
|
| >3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.41 E-value=5.4e-07 Score=92.56 Aligned_cols=110 Identities=15% Similarity=0.183 Sum_probs=69.7
Q ss_pred HHHHHHHHCCCCCCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCC---CCCceeechhhhHh
Q 015771 18 VTESFARRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK---DLPLIHSYNSIQAL 94 (400)
Q Consensus 18 vL~el~~rlp~~~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~---~~~~~~~~~~~~~l 94 (400)
....+...+...++.+|||+|||+|..+..++. .+ ..+|+++|.|+ |++.|++.+.... ++.++.. ++
T Consensus 146 ~~~~il~~l~~~~~~~VLDiGcGtG~la~~la~-~~--~~~V~gvD~s~-~l~~A~~~~~~~gl~~~v~~~~~-----d~ 216 (480)
T 3b3j_A 146 YQRAILQNHTDFKDKIVLDVGCGSGILSFFAAQ-AG--ARKIYAVEAST-MAQHAEVLVKSNNLTDRIVVIPG-----KV 216 (480)
T ss_dssp HHHHHHHTGGGTTTCEEEEESCSTTHHHHHHHH-TT--CSEEEEEECHH-HHHHHHHHHHHTTCTTTEEEEES-----CT
T ss_pred HHHHHHHhhhhcCCCEEEEecCcccHHHHHHHH-cC--CCEEEEEEcHH-HHHHHHHHHHHcCCCCcEEEEEC-----ch
Confidence 344455544445668999999999998887775 32 35899999998 9999988876432 1222221 12
Q ss_pred hhhcccCCCcccEEeecccccCCCCHHHHHHHHHHHHhc--cCCeEE
Q 015771 95 NKDISKSEREHDLVIASYVLGEVPSLQDRITIVRQLWDL--TRDVLV 139 (400)
Q Consensus 95 ~~~l~~~~~~~DLVias~~L~eL~~~~~r~~~i~~Lw~~--~gG~LV 139 (400)
.. ++ ..++||+|++..++..+... .....+..+.+. +||.|+
T Consensus 217 ~~-~~-~~~~fD~Ivs~~~~~~~~~e-~~~~~l~~~~~~LkpgG~li 260 (480)
T 3b3j_A 217 EE-VS-LPEQVDIIISEPMGYMLFNE-RMLESYLHAKKYLKPSGNMF 260 (480)
T ss_dssp TT-CC-CSSCEEEEECCCCHHHHTCH-HHHHHHHHGGGGEEEEEEEE
T ss_pred hh-Cc-cCCCeEEEEEeCchHhcCcH-HHHHHHHHHHHhcCCCCEEE
Confidence 21 12 23589999997665555432 334444444332 788887
|
| >3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.39 E-value=2.1e-06 Score=84.35 Aligned_cols=106 Identities=12% Similarity=0.059 Sum_probs=69.1
Q ss_pred CCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCC--CCCceeechhhhHhhhhcccCCCcccEE
Q 015771 31 PAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK--DLPLIHSYNSIQALNKDISKSEREHDLV 108 (400)
Q Consensus 31 p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~--~~~~~~~~~~~~~l~~~l~~~~~~~DLV 108 (400)
+.+|||+|||+|+.+..++...+ ...+++++|+|+.|++.|+..++..+ ++.+... +.. .++.....||+|
T Consensus 204 ~~~vLD~gcGsG~~~ie~a~~~~-~~~~v~g~Di~~~~i~~a~~n~~~~g~~~i~~~~~-----D~~-~~~~~~~~~D~I 276 (354)
T 3tma_A 204 GMRVLDPFTGSGTIALEAASTLG-PTSPVYAGDLDEKRLGLAREAALASGLSWIRFLRA-----DAR-HLPRFFPEVDRI 276 (354)
T ss_dssp TCCEEESSCTTSHHHHHHHHHHC-TTSCEEEEESCHHHHHHHHHHHHHTTCTTCEEEEC-----CGG-GGGGTCCCCSEE
T ss_pred CCEEEeCCCCcCHHHHHHHHhhC-CCceEEEEECCHHHHHHHHHHHHHcCCCceEEEeC-----Chh-hCccccCCCCEE
Confidence 36899999999999998887662 13579999999999999999887543 2222222 222 222234568999
Q ss_pred eecccccCCCC-HHHH----HHHHHHHHhc--cCCeEEEEcC
Q 015771 109 IASYVLGEVPS-LQDR----ITIVRQLWDL--TRDVLVLVEP 143 (400)
Q Consensus 109 ias~~L~eL~~-~~~r----~~~i~~Lw~~--~gG~LVlVE~ 143 (400)
++.-..++... .... ..+++.+.+. +||.++++.+
T Consensus 277 i~npPyg~r~~~~~~~~~~~~~~~~~~~~~LkpgG~l~i~t~ 318 (354)
T 3tma_A 277 LANPPHGLRLGRKEGLFHLYWDFLRGALALLPPGGRVALLTL 318 (354)
T ss_dssp EECCCSCC----CHHHHHHHHHHHHHHHHTSCTTCEEEEEES
T ss_pred EECCCCcCccCCcccHHHHHHHHHHHHHHhcCCCcEEEEEeC
Confidence 99544433211 1111 3455555554 7999999865
|
| >1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A | Back alignment and structure |
|---|
Probab=98.38 E-value=9.2e-07 Score=86.67 Aligned_cols=105 Identities=15% Similarity=0.172 Sum_probs=64.7
Q ss_pred CCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCC------CCCCceeechhhhHhhhhcc-cCC
Q 015771 30 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGP------KDLPLIHSYNSIQALNKDIS-KSE 102 (400)
Q Consensus 30 ~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~------~~~~~~~~~~~~~~l~~~l~-~~~ 102 (400)
.+.+|||+|||+|..+..++...+ ..+|++||+|+.|++.|++.+... .++.++.. +....++ ...
T Consensus 120 ~~~~VLdIG~G~G~~a~~la~~~~--~~~V~~VDis~~~l~~Ar~~~~~~~~gl~~~rv~~~~~-----D~~~~l~~~~~ 192 (334)
T 1xj5_A 120 NPKKVLVIGGGDGGVLREVARHAS--IEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIG-----DGVAFLKNAAE 192 (334)
T ss_dssp CCCEEEEETCSSSHHHHHHTTCTT--CCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEES-----CHHHHHHTSCT
T ss_pred CCCEEEEECCCccHHHHHHHHcCC--CCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEEC-----CHHHHHHhccC
Confidence 568999999999999988876433 468999999999999999877421 12222221 1211111 124
Q ss_pred CcccEEeecccccCCCCHH-HHHHHHHHHHhc--cCCeEEEE
Q 015771 103 REHDLVIASYVLGEVPSLQ-DRITIVRQLWDL--TRDVLVLV 141 (400)
Q Consensus 103 ~~~DLVias~~L~eL~~~~-~r~~~i~~Lw~~--~gG~LVlV 141 (400)
++||+|++......-+... ....+++.+.+. +||.|++.
T Consensus 193 ~~fDlIi~d~~~p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~ 234 (334)
T 1xj5_A 193 GSYDAVIVDSSDPIGPAKELFEKPFFQSVARALRPGGVVCTQ 234 (334)
T ss_dssp TCEEEEEECCCCTTSGGGGGGSHHHHHHHHHHEEEEEEEEEE
T ss_pred CCccEEEECCCCccCcchhhhHHHHHHHHHHhcCCCcEEEEe
Confidence 6899999854311111010 013444444443 79998875
|
| >3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A* | Back alignment and structure |
|---|
Probab=98.36 E-value=1.6e-07 Score=88.48 Aligned_cols=104 Identities=11% Similarity=0.092 Sum_probs=70.7
Q ss_pred CCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCCCCceeechhhhHhhhhcccCCCcccEEe
Q 015771 30 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDISKSEREHDLVI 109 (400)
Q Consensus 30 ~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~~~~~~~~~~~~~l~~~l~~~~~~~DLVi 109 (400)
.|.+|||+|||.|.++.++....+ ..+|+++|+++.|+++++..+... ++... ..+.++.. ..+.++||+|+
T Consensus 132 ~p~~VLDLGCG~GpLAl~~~~~~p--~a~y~a~DId~~~le~a~~~l~~~-g~~~~---~~v~D~~~--~~p~~~~DvaL 203 (281)
T 3lcv_B 132 RPNTLRDLACGLNPLAAPWMGLPA--ETVYIASDIDARLVGFVDEALTRL-NVPHR---TNVADLLE--DRLDEPADVTL 203 (281)
T ss_dssp CCSEEEETTCTTGGGCCTTTTCCT--TCEEEEEESBHHHHHHHHHHHHHT-TCCEE---EEECCTTT--SCCCSCCSEEE
T ss_pred CCceeeeeccCccHHHHHHHhhCC--CCEEEEEeCCHHHHHHHHHHHHhc-CCCce---EEEeeecc--cCCCCCcchHH
Confidence 378999999999998877665433 579999999999999999988653 23211 11122221 23567899999
Q ss_pred ecccccCCCCHHHHHHHHHHHHhc--cCCeEEEEcC
Q 015771 110 ASYVLGEVPSLQDRITIVRQLWDL--TRDVLVLVEP 143 (400)
Q Consensus 110 as~~L~eL~~~~~r~~~i~~Lw~~--~gG~LVlVE~ 143 (400)
+.-++++|. ...+...+ +++.. ++|++|-.+-
T Consensus 204 ~lkti~~Le-~q~kg~g~-~ll~aL~~~~vvVSfp~ 237 (281)
T 3lcv_B 204 LLKTLPCLE-TQQRGSGW-EVIDIVNSPNIVVTFPT 237 (281)
T ss_dssp ETTCHHHHH-HHSTTHHH-HHHHHSSCSEEEEEEEC
T ss_pred HHHHHHHhh-hhhhHHHH-HHHHHhCCCCEEEeccc
Confidence 999999995 33232333 44443 6677666655
|
| >2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A* | Back alignment and structure |
|---|
Probab=98.35 E-value=4.9e-07 Score=85.99 Aligned_cols=102 Identities=15% Similarity=0.068 Sum_probs=64.2
Q ss_pred CCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCCCCceeechhhhHhhhhcccCCCcccEEee
Q 015771 31 PAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDISKSEREHDLVIA 110 (400)
Q Consensus 31 p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~~~~~~~~~~~~~l~~~l~~~~~~~DLVia 110 (400)
+.+|||+|||+|..+..++.... .+|+++|.|+.|++.|+..++...-...+... ..+... +. ..++||+|++
T Consensus 126 ~~~VLDlgcG~G~~~~~la~~~~---~~V~~vD~s~~~~~~a~~n~~~n~~~~~v~~~--~~D~~~-~~-~~~~fD~Vi~ 198 (278)
T 2frn_A 126 DELVVDMFAGIGHLSLPIAVYGK---AKVIAIEKDPYTFKFLVENIHLNKVEDRMSAY--NMDNRD-FP-GENIADRILM 198 (278)
T ss_dssp TCEEEETTCTTTTTHHHHHHHTC---CEEEEECCCHHHHHHHHHHHHHTTCTTTEEEE--CSCTTT-CC-CCSCEEEEEE
T ss_pred CCEEEEecccCCHHHHHHHHhCC---CEEEEEECCHHHHHHHHHHHHHcCCCceEEEE--ECCHHH-hc-ccCCccEEEE
Confidence 47999999999998888776543 27999999999999999887632111111110 112221 12 2568999998
Q ss_pred cccccCCCCHHHHHHHHHHHHhccCCeEEEEcCC
Q 015771 111 SYVLGEVPSLQDRITIVRQLWDLTRDVLVLVEPG 144 (400)
Q Consensus 111 s~~L~eL~~~~~r~~~i~~Lw~~~gG~LVlVE~G 144 (400)
.... ....-...+.+++ ++||.|++.+..
T Consensus 199 ~~p~----~~~~~l~~~~~~L-kpgG~l~~~~~~ 227 (278)
T 2frn_A 199 GYVV----RTHEFIPKALSIA-KDGAIIHYHNTV 227 (278)
T ss_dssp CCCS----SGGGGHHHHHHHE-EEEEEEEEEEEE
T ss_pred CCch----hHHHHHHHHHHHC-CCCeEEEEEEee
Confidence 6432 1222222333333 279999998775
|
| >1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38 | Back alignment and structure |
|---|
Probab=98.35 E-value=1.5e-06 Score=84.26 Aligned_cols=108 Identities=14% Similarity=0.165 Sum_probs=69.2
Q ss_pred CCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCC--CCCceeechhhhHhhhhcccCCCcccE
Q 015771 30 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK--DLPLIHSYNSIQALNKDISKSEREHDL 107 (400)
Q Consensus 30 ~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~--~~~~~~~~~~~~~l~~~l~~~~~~~DL 107 (400)
.+.+|||+|||+|..+..+++.++ ...+|+++|.|+.|++.++..++... ++.++.. +.. .++...++||+
T Consensus 118 ~g~~VLDlg~G~G~~t~~la~~~~-~~~~v~avD~s~~~l~~a~~~~~~~g~~~v~~~~~-----D~~-~~~~~~~~fD~ 190 (315)
T 1ixk_A 118 PGEIVADMAAAPGGKTSYLAQLMR-NDGVIYAFDVDENRLRETRLNLSRLGVLNVILFHS-----SSL-HIGELNVEFDK 190 (315)
T ss_dssp TTCEEEECCSSCSHHHHHHHHHTT-TCSEEEEECSCHHHHHHHHHHHHHHTCCSEEEESS-----CGG-GGGGGCCCEEE
T ss_pred CCCEEEEeCCCCCHHHHHHHHHhC-CCCEEEEEcCCHHHHHHHHHHHHHhCCCeEEEEEC-----Chh-hcccccccCCE
Confidence 346999999999999998888775 34689999999999999998876432 2222211 111 11212457999
Q ss_pred Eeecc------cccCCCC------HH-------HHHHHHHHHHhc--cCCeEEEEcCC
Q 015771 108 VIASY------VLGEVPS------LQ-------DRITIVRQLWDL--TRDVLVLVEPG 144 (400)
Q Consensus 108 Vias~------~L~eL~~------~~-------~r~~~i~~Lw~~--~gG~LVlVE~G 144 (400)
|++.- ++...++ .. ....+++++++. +||.||+....
T Consensus 191 Il~d~Pcsg~g~~~~~p~~~~~~~~~~~~~~~~~q~~~L~~~~~~LkpGG~lv~stcs 248 (315)
T 1ixk_A 191 ILLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTCS 248 (315)
T ss_dssp EEEECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESC
T ss_pred EEEeCCCCCcccccCChhHhhcCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCC
Confidence 99732 2322221 11 113566666654 89999997654
|
| >3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A* | Back alignment and structure |
|---|
Probab=98.34 E-value=2.2e-06 Score=79.28 Aligned_cols=113 Identities=12% Similarity=0.053 Sum_probs=71.5
Q ss_pred CeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCCCCceeechhhhHhhhhcccCCCcccEEeec
Q 015771 32 AKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDISKSEREHDLVIAS 111 (400)
Q Consensus 32 ~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~~~~~~~~~~~~~l~~~l~~~~~~~DLVias 111 (400)
.+|||+|||+|..+.+++...+ ..+|+++|.|+.+++.|+..++..+-...+... ..+....++ ...+||+|+.+
T Consensus 17 ~~VlDIGtGsG~l~i~la~~~~--~~~V~avDi~~~al~~A~~N~~~~gl~~~i~~~--~~d~l~~l~-~~~~~D~Ivia 91 (225)
T 3kr9_A 17 AILLDVGSDHAYLPIELVERGQ--IKSAIAGEVVEGPYQSAVKNVEAHGLKEKIQVR--LANGLAAFE-ETDQVSVITIA 91 (225)
T ss_dssp EEEEEETCSTTHHHHHHHHTTS--EEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEE--ECSGGGGCC-GGGCCCEEEEE
T ss_pred CEEEEeCCCcHHHHHHHHHhCC--CCEEEEEECCHHHHHHHHHHHHHcCCCceEEEE--ECchhhhcc-cCcCCCEEEEc
Confidence 6899999999999998887653 458999999999999999988654211112111 112222222 12269999887
Q ss_pred ccccCCCCHHHHHHHHHHHHhc--cCCeEEEEcCCCCCchHHHHHHHHHHH
Q 015771 112 YVLGEVPSLQDRITIVRQLWDL--TRDVLVLVEPGTPQGSSIISQMRSHIL 160 (400)
Q Consensus 112 ~~L~eL~~~~~r~~~i~~Lw~~--~gG~LVlVE~Gtp~Gf~~I~~aR~~lL 160 (400)
.+-.+ -...++...+.. ++|.||+ .|.+ + ...+|++|.
T Consensus 92 G~Gg~-----~i~~Il~~~~~~L~~~~~lVl-q~~~--~---~~~vr~~L~ 131 (225)
T 3kr9_A 92 GMGGR-----LIARILEEGLGKLANVERLIL-QPNN--R---EDDLRIWLQ 131 (225)
T ss_dssp EECHH-----HHHHHHHHTGGGCTTCCEEEE-EESS--C---HHHHHHHHH
T ss_pred CCChH-----HHHHHHHHHHHHhCCCCEEEE-ECCC--C---HHHHHHHHH
Confidence 65322 223455555443 5677666 5542 3 456688875
|
| >2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45 | Back alignment and structure |
|---|
Probab=98.34 E-value=1.2e-06 Score=85.67 Aligned_cols=125 Identities=14% Similarity=0.113 Sum_probs=80.3
Q ss_pred CCCeEEEEccchhHHHHHHHHHCCCC---CcEEEEEeCCHHHHHHHHHhhcCCC-CCCceeechhhhHhhhhcccCCCcc
Q 015771 30 SPAKVLDFGAGTGSAFWALREVWPRS---LEKVNLVEPSQSMQRAGQSLMQGPK-DLPLIHSYNSIQALNKDISKSEREH 105 (400)
Q Consensus 30 ~p~~VLDvG~G~Gt~~~Al~~~~~~~---~~~v~~vD~S~~ml~~a~~ll~~~~-~~~~~~~~~~~~~l~~~l~~~~~~~ 105 (400)
.+.+|||+|||+|..+.++.+..+.. ..+++++|.|+.++++|+..+.... +..++.. +... +....+|
T Consensus 130 ~~~~VlDp~cGsG~~l~~~~~~~~~~~~~~~~v~GiDi~~~~~~~a~~n~~~~g~~~~i~~~-----D~l~--~~~~~~f 202 (344)
T 2f8l_A 130 KNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQKMTLLHQ-----DGLA--NLLVDPV 202 (344)
T ss_dssp SEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTCCCEEEES-----CTTS--CCCCCCE
T ss_pred CCCEEEeCCCCccHHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHHHHhCCCCceEEEC-----CCCC--ccccCCc
Confidence 34699999999999998887766421 2689999999999999988764211 1111111 1111 1134689
Q ss_pred cEEeecccccCCCCHH---------------HHHHHHHHHHhc--cCCeEEEEcCCCCCchHHHHHHHHHHHH
Q 015771 106 DLVIASYVLGEVPSLQ---------------DRITIVRQLWDL--TRDVLVLVEPGTPQGSSIISQMRSHILW 161 (400)
Q Consensus 106 DLVias~~L~eL~~~~---------------~r~~~i~~Lw~~--~gG~LVlVE~Gtp~Gf~~I~~aR~~lL~ 161 (400)
|+|++.-.++.++... ....++..+++. +||.+++|-|..--+...-..+|++|++
T Consensus 203 D~Ii~NPPfg~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~Lk~gG~~~~v~p~~~~~~~~~~~ir~~l~~ 275 (344)
T 2f8l_A 203 DVVISDLPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFLVPDAMFGTSDFAKVDKFIKK 275 (344)
T ss_dssp EEEEEECCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEEEEGGGGGSTTHHHHHHHHHH
T ss_pred cEEEECCCCCCcCchhhhhhccccCCCCcchHHHHHHHHHHHHhCCCCEEEEEECchhcCCchHHHHHHHHHh
Confidence 9999986655544322 112466666654 7999999986543333334677888763
|
| >2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A* | Back alignment and structure |
|---|
Probab=98.32 E-value=4.8e-07 Score=84.05 Aligned_cols=99 Identities=16% Similarity=0.206 Sum_probs=62.1
Q ss_pred CCCeEEEEccchhHHHHHHHHH---CCCCCcEEEEEeCCHHHHHHHHHhhcCCCCCCceeechhhhHhhhh--ccc-CCC
Q 015771 30 SPAKVLDFGAGTGSAFWALREV---WPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKD--ISK-SER 103 (400)
Q Consensus 30 ~p~~VLDvG~G~Gt~~~Al~~~---~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~~~~~~~~~~~~~l~~~--l~~-~~~ 103 (400)
++.+|||+|||+|..+..+++. .. ...+|++||.|+.|++.|+.+. .++.++... .... ++. ...
T Consensus 81 ~~~~VLDiG~GtG~~t~~la~~~~~~~-~~~~V~gvD~s~~~l~~a~~~~---~~v~~~~gD-----~~~~~~l~~~~~~ 151 (236)
T 2bm8_A 81 RPRTIVELGVYNGGSLAWFRDLTKIMG-IDCQVIGIDRDLSRCQIPASDM---ENITLHQGD-----CSDLTTFEHLREM 151 (236)
T ss_dssp CCSEEEEECCTTSHHHHHHHHHHHHTT-CCCEEEEEESCCTTCCCCGGGC---TTEEEEECC-----SSCSGGGGGGSSS
T ss_pred CCCEEEEEeCCCCHHHHHHHHhhhhcC-CCCEEEEEeCChHHHHHHhccC---CceEEEECc-----chhHHHHHhhccC
Confidence 3579999999999988887765 22 2468999999999988876321 223333221 1110 121 223
Q ss_pred cccEEeecccccCCCCHHHHHHHHHHHHh-c--cCCeEEEEcC
Q 015771 104 EHDLVIASYVLGEVPSLQDRITIVRQLWD-L--TRDVLVLVEP 143 (400)
Q Consensus 104 ~~DLVias~~L~eL~~~~~r~~~i~~Lw~-~--~gG~LVlVE~ 143 (400)
+||+|++... + . +. ..++.++.+ . +||.||+.+.
T Consensus 152 ~fD~I~~d~~-~-~-~~---~~~l~~~~r~~LkpGG~lv~~d~ 188 (236)
T 2bm8_A 152 AHPLIFIDNA-H-A-NT---FNIMKWAVDHLLEEGDYFIIEDM 188 (236)
T ss_dssp CSSEEEEESS-C-S-SH---HHHHHHHHHHTCCTTCEEEECSC
T ss_pred CCCEEEECCc-h-H-hH---HHHHHHHHHhhCCCCCEEEEEeC
Confidence 7999997654 2 1 22 345555543 2 8999998764
|
| >3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp} | Back alignment and structure |
|---|
Probab=98.30 E-value=7.3e-07 Score=82.82 Aligned_cols=46 Identities=13% Similarity=0.024 Sum_probs=36.9
Q ss_pred CCCCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhh
Q 015771 28 GFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLM 76 (400)
Q Consensus 28 ~~~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll 76 (400)
...+.+|||+|||+|..+..+++. + ..+|++||.|+.|++.+++..
T Consensus 35 ~~~g~~VLDiGcGtG~~t~~la~~-g--~~~V~gvDis~~ml~~a~~~~ 80 (232)
T 3opn_A 35 EINGKTCLDIGSSTGGFTDVMLQN-G--AKLVYALDVGTNQLAWKIRSD 80 (232)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHT-T--CSEEEEECSSCCCCCHHHHTC
T ss_pred CCCCCEEEEEccCCCHHHHHHHhc-C--CCEEEEEcCCHHHHHHHHHhC
Confidence 345579999999999998877754 2 248999999999999877643
|
| >3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A | Back alignment and structure |
|---|
Probab=98.29 E-value=2.7e-06 Score=80.64 Aligned_cols=111 Identities=17% Similarity=0.084 Sum_probs=68.7
Q ss_pred CCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCC--CCCceeechhhhHhhhhcccCCCcccEE
Q 015771 31 PAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK--DLPLIHSYNSIQALNKDISKSEREHDLV 108 (400)
Q Consensus 31 p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~--~~~~~~~~~~~~~l~~~l~~~~~~~DLV 108 (400)
+.+|||+|||+|..+..+++.++ ...+|+++|.|+.|++.++..++... ++.++... ...+...+....++||+|
T Consensus 84 g~~VLDlgaG~G~~t~~la~~~~-~~~~v~avD~~~~~l~~~~~~~~~~g~~~v~~~~~D--~~~~~~~~~~~~~~fD~V 160 (274)
T 3ajd_A 84 DDFILDMCAAPGGKTTHLAQLMK-NKGTIVAVEISKTRTKALKSNINRMGVLNTIIINAD--MRKYKDYLLKNEIFFDKI 160 (274)
T ss_dssp TCEEEETTCTTCHHHHHHHHHTT-TCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESC--HHHHHHHHHHTTCCEEEE
T ss_pred cCEEEEeCCCccHHHHHHHHHcC-CCCEEEEECCCHHHHHHHHHHHHHhCCCcEEEEeCC--hHhcchhhhhccccCCEE
Confidence 46999999999999988888775 34689999999999999998876432 22222211 111111110024579999
Q ss_pred eecccc---cCCC-----CH-------HHHHHHHHHHHhc--cCCeEEEEcCC
Q 015771 109 IASYVL---GEVP-----SL-------QDRITIVRQLWDL--TRDVLVLVEPG 144 (400)
Q Consensus 109 ias~~L---~eL~-----~~-------~~r~~~i~~Lw~~--~gG~LVlVE~G 144 (400)
++.--. +.+. +. .....+++++++. +||.||+....
T Consensus 161 l~d~Pcs~~g~~~~~p~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~stcs 213 (274)
T 3ajd_A 161 LLDAPCSGNIIKDKNRNVSEEDIKYCSLRQKELIDIGIDLLKKDGELVYSTCS 213 (274)
T ss_dssp EEEECCC------------HHHHTGGGTCHHHHHHHHHHHEEEEEEEEEEESC
T ss_pred EEcCCCCCCcccccCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEECC
Confidence 986221 1110 00 1124566666653 89999998664
|
| >3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae} | Back alignment and structure |
|---|
Probab=98.29 E-value=3.7e-06 Score=78.04 Aligned_cols=115 Identities=13% Similarity=0.007 Sum_probs=72.3
Q ss_pred CCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCCCCceeechhhhHhhhhcccCCCcccEEee
Q 015771 31 PAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDISKSEREHDLVIA 110 (400)
Q Consensus 31 p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~~~~~~~~~~~~~l~~~l~~~~~~~DLVia 110 (400)
+.+|||+|||+|..+.+++...+ ..+|+++|.|+.+++.|+..++..+-...+... ..+....+. +..+||+|+.
T Consensus 22 g~~VlDIGtGsG~l~i~la~~~~--~~~V~AvDi~~~al~~A~~N~~~~gl~~~I~~~--~gD~l~~~~-~~~~~D~Ivi 96 (230)
T 3lec_A 22 GARLLDVGSDHAYLPIFLLQMGY--CDFAIAGEVVNGPYQSALKNVSEHGLTSKIDVR--LANGLSAFE-EADNIDTITI 96 (230)
T ss_dssp TEEEEEETCSTTHHHHHHHHTTC--EEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEE--ECSGGGGCC-GGGCCCEEEE
T ss_pred CCEEEEECCchHHHHHHHHHhCC--CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEE--ECchhhccc-cccccCEEEE
Confidence 36999999999999998886543 458999999999999999988654211112111 112222221 2237999998
Q ss_pred cccccCCCCHHHHHHHHHHHHhc--cCCeEEEEcCCCCCchHHHHHHHHHHHH
Q 015771 111 SYVLGEVPSLQDRITIVRQLWDL--TRDVLVLVEPGTPQGSSIISQMRSHILW 161 (400)
Q Consensus 111 s~~L~eL~~~~~r~~~i~~Lw~~--~gG~LVlVE~Gtp~Gf~~I~~aR~~lL~ 161 (400)
+.+..++ ...++...+.. ++|.||+-=. .+ ...+|+++..
T Consensus 97 aGmGg~l-----I~~IL~~~~~~l~~~~~lIlqp~---~~---~~~lr~~L~~ 138 (230)
T 3lec_A 97 CGMGGRL-----IADILNNDIDKLQHVKTLVLQPN---NR---EDDLRKWLAA 138 (230)
T ss_dssp EEECHHH-----HHHHHHHTGGGGTTCCEEEEEES---SC---HHHHHHHHHH
T ss_pred eCCchHH-----HHHHHHHHHHHhCcCCEEEEECC---CC---hHHHHHHHHH
Confidence 7765432 23345444433 5677765532 23 4667888763
|
| >3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP} | Back alignment and structure |
|---|
Probab=98.28 E-value=2e-07 Score=84.62 Aligned_cols=41 Identities=22% Similarity=0.240 Sum_probs=35.2
Q ss_pred CCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHH
Q 015771 30 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAG 72 (400)
Q Consensus 30 ~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a 72 (400)
.+.+|||+|||+|..+..++..+| ..+|+++|.|+.|++.+
T Consensus 27 ~~~~vLDiGcG~G~~~~~la~~~p--~~~v~gvD~s~~~l~~~ 67 (218)
T 3mq2_A 27 YDDVVLDVGTGDGKHPYKVARQNP--SRLVVALDADKSRMEKI 67 (218)
T ss_dssp SSEEEEEESCTTCHHHHHHHHHCT--TEEEEEEESCGGGGHHH
T ss_pred CCCEEEEecCCCCHHHHHHHHHCC--CCEEEEEECCHHHHHHH
Confidence 346999999999999999888765 36899999999999853
|
| >3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A* | Back alignment and structure |
|---|
Probab=98.28 E-value=8.9e-07 Score=81.66 Aligned_cols=40 Identities=15% Similarity=0.185 Sum_probs=33.4
Q ss_pred CCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCC-HHHHHHH
Q 015771 31 PAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPS-QSMQRAG 72 (400)
Q Consensus 31 p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S-~~ml~~a 72 (400)
+.+|||+|||+|..+..++...+ ..+|++||+| +.|++.|
T Consensus 25 ~~~vLDiGCG~G~~~~~la~~~~--~~~v~GvD~s~~~ml~~A 65 (225)
T 3p2e_A 25 DRVHIDLGTGDGRNIYKLAINDQ--NTFYIGIDPVKENLFDIS 65 (225)
T ss_dssp SEEEEEETCTTSHHHHHHHHTCT--TEEEEEECSCCGGGHHHH
T ss_pred CCEEEEEeccCcHHHHHHHHhCC--CCEEEEEeCCHHHHHHHH
Confidence 46899999999999888776543 4689999999 8888776
|
| >3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=98.25 E-value=3.2e-06 Score=79.12 Aligned_cols=115 Identities=13% Similarity=-0.019 Sum_probs=71.0
Q ss_pred CCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCCCCceeechhhhHhhhhcccCCCcccEEee
Q 015771 31 PAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDISKSEREHDLVIA 110 (400)
Q Consensus 31 p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~~~~~~~~~~~~~l~~~l~~~~~~~DLVia 110 (400)
+.+|||+|||+|..+.+++...+ ..+|+++|.|+.+++.|+..++..+-...+... ..+....+. +..+||+|++
T Consensus 22 g~~VlDIGtGsG~l~i~la~~~~--~~~V~avDi~~~al~~A~~N~~~~gl~~~I~v~--~gD~l~~~~-~~~~~D~Ivi 96 (244)
T 3gnl_A 22 NERIADIGSDHAYLPCFAVKNQT--ASFAIAGEVVDGPFQSAQKQVRSSGLTEQIDVR--KGNGLAVIE-KKDAIDTIVI 96 (244)
T ss_dssp SEEEEEETCSTTHHHHHHHHTTS--EEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEE--ECSGGGGCC-GGGCCCEEEE
T ss_pred CCEEEEECCccHHHHHHHHHhCC--CCEEEEEECCHHHHHHHHHHHHHcCCCceEEEE--ecchhhccC-ccccccEEEE
Confidence 36999999999999998886543 458999999999999999988654211112111 112222221 2235999998
Q ss_pred cccccCCCCHHHHHHHHHHHHhc--cCCeEEEEcCCCCCchHHHHHHHHHHHH
Q 015771 111 SYVLGEVPSLQDRITIVRQLWDL--TRDVLVLVEPGTPQGSSIISQMRSHILW 161 (400)
Q Consensus 111 s~~L~eL~~~~~r~~~i~~Lw~~--~gG~LVlVE~Gtp~Gf~~I~~aR~~lL~ 161 (400)
+.+..++ ...++...... +++.||+- |- .| ...+|++|..
T Consensus 97 agmGg~l-----I~~IL~~~~~~L~~~~~lIlq-~~--~~---~~~lr~~L~~ 138 (244)
T 3gnl_A 97 AGMGGTL-----IRTILEEGAAKLAGVTKLILQ-PN--IA---AWQLREWSEQ 138 (244)
T ss_dssp EEECHHH-----HHHHHHHTGGGGTTCCEEEEE-ES--SC---HHHHHHHHHH
T ss_pred eCCchHH-----HHHHHHHHHHHhCCCCEEEEE-cC--CC---hHHHHHHHHH
Confidence 7664432 23344444433 45666655 32 23 4566888763
|
| >2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A | Back alignment and structure |
|---|
Probab=98.25 E-value=5.8e-07 Score=78.83 Aligned_cols=86 Identities=15% Similarity=0.173 Sum_probs=59.7
Q ss_pred CCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCCCCceeechhhhHhhhhccc---CCCcccE
Q 015771 31 PAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDISK---SEREHDL 107 (400)
Q Consensus 31 p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~~~~~~~~~~~~~l~~~l~~---~~~~~DL 107 (400)
..+|||+|||. +.+|.|+.|++.|++.+.. ++.++.. ++. .++. ..++||+
T Consensus 13 g~~vL~~~~g~------------------v~vD~s~~ml~~a~~~~~~--~~~~~~~-----d~~-~~~~~~~~~~~fD~ 66 (176)
T 2ld4_A 13 GQFVAVVWDKS------------------SPVEALKGLVDKLQALTGN--EGRVSVE-----NIK-QLLQSAHKESSFDI 66 (176)
T ss_dssp TSEEEEEECTT------------------SCHHHHHHHHHHHHHHTTT--TSEEEEE-----EGG-GGGGGCCCSSCEEE
T ss_pred CCEEEEecCCc------------------eeeeCCHHHHHHHHHhccc--CcEEEEe-----chh-cCccccCCCCCEeE
Confidence 47999999995 2399999999999988753 2333322 122 2222 4678999
Q ss_pred EeecccccCC-CCHHHHHHHHHHHHhccCCeEEEEcC
Q 015771 108 VIASYVLGEV-PSLQDRITIVRQLWDLTRDVLVLVEP 143 (400)
Q Consensus 108 Vias~~L~eL-~~~~~r~~~i~~Lw~~~gG~LVlVE~ 143 (400)
|+++++|+++ ++......-+.+++ +|||.|++.++
T Consensus 67 V~~~~~l~~~~~~~~~~l~~~~r~L-kpgG~l~~~~~ 102 (176)
T 2ld4_A 67 ILSGLVPGSTTLHSAEILAEIARIL-RPGGCLFLKEP 102 (176)
T ss_dssp EEECCSTTCCCCCCHHHHHHHHHHE-EEEEEEEEEEE
T ss_pred EEECChhhhcccCHHHHHHHHHHHC-CCCEEEEEEcc
Confidence 9999999999 66544444444444 38999999765
|
| >2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A* | Back alignment and structure |
|---|
Probab=98.24 E-value=2.2e-06 Score=81.67 Aligned_cols=115 Identities=15% Similarity=0.198 Sum_probs=63.2
Q ss_pred HHHHHHHCCCCC-CCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCC----CCCceeechhhhH
Q 015771 19 TESFARRLPGFS-PAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK----DLPLIHSYNSIQA 93 (400)
Q Consensus 19 L~el~~rlp~~~-p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~----~~~~~~~~~~~~~ 93 (400)
|.++.++ ..++ ..+|||+|||||..+..+++. .+|++||.|+ |+..++....... ++.++.. ..+
T Consensus 71 L~~i~~~-~~~~~g~~VLDlGcGtG~~s~~la~~-----~~V~gVD~s~-m~~~a~~~~~~~~~~~~~v~~~~~---~~D 140 (276)
T 2wa2_A 71 LAWIDER-GGVELKGTVVDLGCGRGSWSYYAASQ-----PNVREVKAYT-LGTSGHEKPRLVETFGWNLITFKS---KVD 140 (276)
T ss_dssp HHHHHHT-TSCCCCEEEEEESCTTCHHHHHHHTS-----TTEEEEEEEC-CCCTTSCCCCCCCCTTGGGEEEEC---SCC
T ss_pred HHHHHHc-CCCCCCCEEEEeccCCCHHHHHHHHc-----CCEEEEECch-hhhhhhhchhhhhhcCCCeEEEec---cCc
Confidence 4555554 3333 369999999999998887743 5799999998 6432211100000 1111100 112
Q ss_pred hhhhcccCCCcccEEeecccccCCCCHH---H----HHHHHHHHHhccCC--eEEEEcCCCCCch
Q 015771 94 LNKDISKSEREHDLVIASYVLGEVPSLQ---D----RITIVRQLWDLTRD--VLVLVEPGTPQGS 149 (400)
Q Consensus 94 l~~~l~~~~~~~DLVias~~L~eL~~~~---~----r~~~i~~Lw~~~gG--~LVlVE~Gtp~Gf 149 (400)
+. .+ +.++||+|++..+ +...... . .+..+.++++ ||| .+|+-... |...
T Consensus 141 ~~-~l--~~~~fD~Vvsd~~-~~~~~~~~d~~~~l~~L~~~~r~Lk-pGG~~~~v~~~~~-~~~~ 199 (276)
T 2wa2_A 141 VT-KM--EPFQADTVLCDIG-ESNPTAAVEASRTLTVLNVISRWLE-YNQGCGFCVKVLN-PYSC 199 (276)
T ss_dssp GG-GC--CCCCCSEEEECCC-CCCSCHHHHHHHHHHHHHHHHHHHH-HSTTCEEEEEESC-CCSH
T ss_pred Hh-hC--CCCCcCEEEECCC-cCCCchhhhHHHHHHHHHHHHHHhc-cCCCcEEEEEeCC-CCch
Confidence 22 12 2568999999877 4433321 1 1223334443 799 88876555 4443
|
| >2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51 | Back alignment and structure |
|---|
Probab=98.23 E-value=2e-06 Score=84.16 Aligned_cols=108 Identities=12% Similarity=0.073 Sum_probs=64.5
Q ss_pred CCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCC--C--CCceeechhhhHhhhhcccCCCccc
Q 015771 31 PAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK--D--LPLIHSYNSIQALNKDISKSEREHD 106 (400)
Q Consensus 31 p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~--~--~~~~~~~~~~~~l~~~l~~~~~~~D 106 (400)
+.+|||+|||+|..+.+++.. ..+|++||.|+.|++.|+..++... + +.++... ..++.........+||
T Consensus 154 ~~~VLDlgcGtG~~sl~la~~----ga~V~~VD~s~~al~~a~~n~~~~gl~~~~v~~i~~D--~~~~l~~~~~~~~~fD 227 (332)
T 2igt_A 154 PLKVLNLFGYTGVASLVAAAA----GAEVTHVDASKKAIGWAKENQVLAGLEQAPIRWICED--AMKFIQREERRGSTYD 227 (332)
T ss_dssp CCEEEEETCTTCHHHHHHHHT----TCEEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSC--HHHHHHHHHHHTCCBS
T ss_pred CCcEEEcccccCHHHHHHHHc----CCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECc--HHHHHHHHHhcCCCce
Confidence 469999999999998887752 2389999999999999998875321 1 2222211 1111111111145899
Q ss_pred EEeec---ccccCC---C-CHHHHHHHHHHHHhc--cCCeEEEEcCC
Q 015771 107 LVIAS---YVLGEV---P-SLQDRITIVRQLWDL--TRDVLVLVEPG 144 (400)
Q Consensus 107 LVias---~~L~eL---~-~~~~r~~~i~~Lw~~--~gG~LVlVE~G 144 (400)
+|++. +....- . .......++..+.+. +||.|++....
T Consensus 228 ~Ii~dPP~~~~~~~~~~~~~~~~~~~ll~~~~~~LkpgG~lli~~~~ 274 (332)
T 2igt_A 228 IILTDPPKFGRGTHGEVWQLFDHLPLMLDICREILSPKALGLVLTAY 274 (332)
T ss_dssp EEEECCCSEEECTTCCEEEHHHHHHHHHHHHHHTBCTTCCEEEEEEC
T ss_pred EEEECCccccCCchHHHHHHHHHHHHHHHHHHHhcCcCcEEEEEECC
Confidence 99983 222211 0 122334566655543 79987665543
|
| >2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus} | Back alignment and structure |
|---|
Probab=98.22 E-value=1.9e-06 Score=81.64 Aligned_cols=115 Identities=12% Similarity=0.160 Sum_probs=62.3
Q ss_pred HHHHHHHCCCCC-CCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCC----CCCceeechhhhH
Q 015771 19 TESFARRLPGFS-PAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK----DLPLIHSYNSIQA 93 (400)
Q Consensus 19 L~el~~rlp~~~-p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~----~~~~~~~~~~~~~ 93 (400)
|.++.++ ..++ ..+|||+|||||..+..+++. .+|++||.|+ |+..++....... ++.++.. ..+
T Consensus 63 L~~i~~~-~~~~~g~~VLDlGcGtG~~s~~la~~-----~~V~gvD~s~-m~~~a~~~~~~~~~~~~~v~~~~~---~~D 132 (265)
T 2oxt_A 63 LAWMEER-GYVELTGRVVDLGCGRGGWSYYAASR-----PHVMDVRAYT-LGVGGHEVPRITESYGWNIVKFKS---RVD 132 (265)
T ss_dssp HHHHHHH-TSCCCCEEEEEESCTTSHHHHHHHTS-----TTEEEEEEEC-CCCSSCCCCCCCCBTTGGGEEEEC---SCC
T ss_pred HHHHHHc-CCCCCCCEEEEeCcCCCHHHHHHHHc-----CcEEEEECch-hhhhhhhhhhhhhccCCCeEEEec---ccC
Confidence 3444444 2333 369999999999998877743 5799999998 6322111000000 1111100 112
Q ss_pred hhhhcccCCCcccEEeecccccCCCCHH---H----HHHHHHHHHhccCC--eEEEEcCCCCCch
Q 015771 94 LNKDISKSEREHDLVIASYVLGEVPSLQ---D----RITIVRQLWDLTRD--VLVLVEPGTPQGS 149 (400)
Q Consensus 94 l~~~l~~~~~~~DLVias~~L~eL~~~~---~----r~~~i~~Lw~~~gG--~LVlVE~Gtp~Gf 149 (400)
+. .+ +.++||+|++..+ +...... . .+..+.++++ ||| .+|+-... |...
T Consensus 133 ~~-~l--~~~~fD~V~sd~~-~~~~~~~~d~~~~l~~L~~~~r~Lk-pGG~~~fv~kv~~-~~~~ 191 (265)
T 2oxt_A 133 IH-TL--PVERTDVIMCDVG-ESSPKWSVESERTIKILELLEKWKV-KNPSADFVVKVLC-PYSV 191 (265)
T ss_dssp TT-TS--CCCCCSEEEECCC-CCCSCHHHHHHHHHHHHHHHHHHHH-HCTTCEEEEEESC-TTSH
T ss_pred Hh-HC--CCCCCcEEEEeCc-ccCCccchhHHHHHHHHHHHHHHhc-cCCCeEEEEEeCC-CCCh
Confidence 21 12 2468999999877 4443321 1 1223334443 799 88876555 5444
|
| >3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=98.19 E-value=2.1e-06 Score=81.43 Aligned_cols=101 Identities=18% Similarity=0.085 Sum_probs=66.0
Q ss_pred CCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCC--CCCceeechhhhHhhhhcccCCCcccEE
Q 015771 31 PAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK--DLPLIHSYNSIQALNKDISKSEREHDLV 108 (400)
Q Consensus 31 p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~--~~~~~~~~~~~~~l~~~l~~~~~~~DLV 108 (400)
..+|||+|||+|+.+..++...+ ..+|+++|.|+.|++.|+..++... +..++. .+... .+ ..++||+|
T Consensus 120 ~~~VLDlgcG~G~~s~~la~~~~--~~~V~~vD~s~~av~~a~~n~~~n~l~~~~~~~-----~d~~~-~~-~~~~~D~V 190 (272)
T 3a27_A 120 NEVVVDMFAGIGYFTIPLAKYSK--PKLVYAIEKNPTAYHYLCENIKLNKLNNVIPIL-----ADNRD-VE-LKDVADRV 190 (272)
T ss_dssp TCEEEETTCTTTTTHHHHHHHTC--CSEEEEEECCHHHHHHHHHHHHHTTCSSEEEEE-----SCGGG-CC-CTTCEEEE
T ss_pred CCEEEEecCcCCHHHHHHHHhCC--CCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEE-----CChHH-cC-ccCCceEE
Confidence 46999999999999988887654 3589999999999999998875431 222222 12222 12 24579999
Q ss_pred eecccccCCCCHHHHHHHHHHHHhccCCeEEEEcCCC
Q 015771 109 IASYVLGEVPSLQDRITIVRQLWDLTRDVLVLVEPGT 145 (400)
Q Consensus 109 ias~~L~eL~~~~~r~~~i~~Lw~~~gG~LVlVE~Gt 145 (400)
++.... ........+..++ ++||.+++.+...
T Consensus 191 i~d~p~----~~~~~l~~~~~~L-kpgG~l~~s~~~~ 222 (272)
T 3a27_A 191 IMGYVH----KTHKFLDKTFEFL-KDRGVIHYHETVA 222 (272)
T ss_dssp EECCCS----SGGGGHHHHHHHE-EEEEEEEEEEEEE
T ss_pred EECCcc----cHHHHHHHHHHHc-CCCCEEEEEEcCc
Confidence 987654 1222222222233 3799999887643
|
| >2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638} | Back alignment and structure |
|---|
Probab=98.18 E-value=7.5e-06 Score=81.07 Aligned_cols=106 Identities=8% Similarity=0.004 Sum_probs=69.1
Q ss_pred CCCCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCC--CCCceeechhhhHhhhhccc-CCCc
Q 015771 28 GFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK--DLPLIHSYNSIQALNKDISK-SERE 104 (400)
Q Consensus 28 ~~~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~--~~~~~~~~~~~~~l~~~l~~-~~~~ 104 (400)
...+.+|||+| |+|..+.+++...+ ..+++++|.|+.|++.|++.++..+ ++.++. .++...++. ..++
T Consensus 170 ~~~~~~VLDlG-G~G~~~~~la~~~~--~~~v~~vDi~~~~l~~a~~~~~~~g~~~v~~~~-----~D~~~~l~~~~~~~ 241 (373)
T 2qm3_A 170 DLENKDIFVLG-DDDLTSIALMLSGL--PKRIAVLDIDERLTKFIEKAANEIGYEDIEIFT-----FDLRKPLPDYALHK 241 (373)
T ss_dssp CSTTCEEEEES-CTTCHHHHHHHHTC--CSEEEEECSCHHHHHHHHHHHHHHTCCCEEEEC-----CCTTSCCCTTTSSC
T ss_pred CCCCCEEEEEC-CCCHHHHHHHHhCC--CCEEEEEECCHHHHHHHHHHHHHcCCCCEEEEE-----ChhhhhchhhccCC
Confidence 34568999999 99999888776543 2589999999999999999876432 222222 223222332 2358
Q ss_pred ccEEeecccccCCCCHHHHHHHHHHHHhc--cCCeEEEEcCCC
Q 015771 105 HDLVIASYVLGEVPSLQDRITIVRQLWDL--TRDVLVLVEPGT 145 (400)
Q Consensus 105 ~DLVias~~L~eL~~~~~r~~~i~~Lw~~--~gG~LVlVE~Gt 145 (400)
||+|+++..++.. ....++.++.+. +||.+++++-.+
T Consensus 242 fD~Vi~~~p~~~~----~~~~~l~~~~~~LkpgG~~~~~~~~~ 280 (373)
T 2qm3_A 242 FDTFITDPPETLE----AIRAFVGRGIATLKGPRCAGYFGITR 280 (373)
T ss_dssp BSEEEECCCSSHH----HHHHHHHHHHHTBCSTTCEEEEEECT
T ss_pred ccEEEECCCCchH----HHHHHHHHHHHHcccCCeEEEEEEec
Confidence 9999998654322 235566666654 789655555444
|
| >2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A* | Back alignment and structure |
|---|
Probab=98.17 E-value=3.1e-06 Score=84.49 Aligned_cols=128 Identities=17% Similarity=0.098 Sum_probs=75.6
Q ss_pred HHHHHHHHCCCCCCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCCCCceeechhhhHhhhh
Q 015771 18 VTESFARRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKD 97 (400)
Q Consensus 18 vL~el~~rlp~~~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~~~~~~~~~~~~~l~~~ 97 (400)
+...+.+.+....+.+|||+|||+|..+.++++.++ ...+++++|.++.|++.| .++..+.. ++..
T Consensus 27 l~~~~~~~~~~~~~~~vLD~gcGtG~~~~~~~~~~~-~~~~i~gvDi~~~~~~~a-------~~~~~~~~-----D~~~- 92 (421)
T 2ih2_A 27 VVDFMVSLAEAPRGGRVLEPACAHGPFLRAFREAHG-TAYRFVGVEIDPKALDLP-------PWAEGILA-----DFLL- 92 (421)
T ss_dssp HHHHHHHHCCCCTTCEEEEETCTTCHHHHHHHHHHC-SCSEEEEEESCTTTCCCC-------TTEEEEES-----CGGG-
T ss_pred HHHHHHHhhccCCCCEEEECCCCChHHHHHHHHHhC-CCCeEEEEECCHHHHHhC-------CCCcEEeC-----Chhh-
Confidence 334444444433457999999999999998887653 236899999999998766 12222221 1211
Q ss_pred cccCCCcccEEeec--ccccC--------CCCHHHHH-----------------HHHHHHHhc--cCCeEEEEcCCCCCc
Q 015771 98 ISKSEREHDLVIAS--YVLGE--------VPSLQDRI-----------------TIVRQLWDL--TRDVLVLVEPGTPQG 148 (400)
Q Consensus 98 l~~~~~~~DLVias--~~L~e--------L~~~~~r~-----------------~~i~~Lw~~--~gG~LVlVE~Gtp~G 148 (400)
. ...++||+|++. |.-.. +. ...+. .++..+.+. +||.+++|-|..-..
T Consensus 93 ~-~~~~~fD~Ii~NPPy~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~~G~~~~i~p~~~l~ 170 (421)
T 2ih2_A 93 W-EPGEAFDLILGNPPYGIVGEASKYPIHVF-KAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVFVVPATWLV 170 (421)
T ss_dssp C-CCSSCEEEEEECCCCCCBSCTTTCSBCCC-HHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEEEEEGGGGT
T ss_pred c-CccCCCCEEEECcCccCcccccccccccC-HHHHHHHHHhhhcccCCccHHHHHHHHHHHHhCCCCEEEEEEChHHhc
Confidence 1 124689999995 22111 21 22221 334444443 799999997754221
Q ss_pred hHHHHHHHHHHHH
Q 015771 149 SSIISQMRSHILW 161 (400)
Q Consensus 149 f~~I~~aR~~lL~ 161 (400)
-.....+|+.++.
T Consensus 171 ~~~~~~lr~~l~~ 183 (421)
T 2ih2_A 171 LEDFALLREFLAR 183 (421)
T ss_dssp CGGGHHHHHHHHH
T ss_pred CccHHHHHHHHHh
Confidence 1223557888874
|
| >2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A | Back alignment and structure |
|---|
Probab=98.16 E-value=4.5e-06 Score=78.94 Aligned_cols=94 Identities=13% Similarity=0.052 Sum_probs=61.1
Q ss_pred CCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCC---CCCceeechhhhHhhhhcccCCCccc
Q 015771 30 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK---DLPLIHSYNSIQALNKDISKSEREHD 106 (400)
Q Consensus 30 ~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~---~~~~~~~~~~~~~l~~~l~~~~~~~D 106 (400)
.|.+|||+|||+|..+..+... + .++++||+++.|++.|++.+.... ..+.+... ..+.. ... ++||
T Consensus 72 ~~~~VL~iG~G~G~~~~~ll~~-~---~~v~~veid~~~i~~ar~~~~~~~~~~~~~rv~~~--~~D~~---~~~-~~fD 141 (262)
T 2cmg_A 72 ELKEVLIVDGFDLELAHQLFKY-D---THIDFVQADEKILDSFISFFPHFHEVKNNKNFTHA--KQLLD---LDI-KKYD 141 (262)
T ss_dssp CCCEEEEESSCCHHHHHHHTTS-S---CEEEEECSCHHHHGGGTTTSTTHHHHHTCTTEEEE--SSGGG---SCC-CCEE
T ss_pred CCCEEEEEeCCcCHHHHHHHhC-C---CEEEEEECCHHHHHHHHHHHHhhccccCCCeEEEE--echHH---HHH-hhCC
Confidence 5689999999999998877654 3 689999999999999987664310 01112111 11111 112 6899
Q ss_pred EEeecccccCCCCHHHHHHHHHHHHhc--cCCeEEEE
Q 015771 107 LVIASYVLGEVPSLQDRITIVRQLWDL--TRDVLVLV 141 (400)
Q Consensus 107 LVias~~L~eL~~~~~r~~~i~~Lw~~--~gG~LVlV 141 (400)
+|++.. +++.. +++.+.+. +||.|++.
T Consensus 142 ~Ii~d~-----~dp~~---~~~~~~~~L~pgG~lv~~ 170 (262)
T 2cmg_A 142 LIFCLQ-----EPDIH---RIDGLKRMLKEDGVFISV 170 (262)
T ss_dssp EEEESS-----CCCHH---HHHHHHTTEEEEEEEEEE
T ss_pred EEEECC-----CChHH---HHHHHHHhcCCCcEEEEE
Confidence 999862 23332 55555543 79999875
|
| >2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A* | Back alignment and structure |
|---|
Probab=98.15 E-value=8.2e-06 Score=81.29 Aligned_cols=111 Identities=14% Similarity=0.079 Sum_probs=66.4
Q ss_pred CCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCC----CCCceeechhhhHhhhhcccCCCcc
Q 015771 30 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK----DLPLIHSYNSIQALNKDISKSEREH 105 (400)
Q Consensus 30 ~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~----~~~~~~~~~~~~~l~~~l~~~~~~~ 105 (400)
.+.+|||+|||+|+.+.+++.. ...+|++||.|+.|++.|+..++... ++.++... ..+....+.....+|
T Consensus 212 ~~~~VLDl~cGtG~~sl~la~~---ga~~V~~vD~s~~al~~A~~N~~~n~~~~~~v~~~~~D--~~~~l~~~~~~~~~f 286 (385)
T 2b78_A 212 AGKTVLNLFSYTAAFSVAAAMG---GAMATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMD--VFDYFKYARRHHLTY 286 (385)
T ss_dssp BTCEEEEETCTTTHHHHHHHHT---TBSEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESC--HHHHHHHHHHTTCCE
T ss_pred CCCeEEEEeeccCHHHHHHHHC---CCCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECC--HHHHHHHHHHhCCCc
Confidence 3479999999999998887742 23589999999999999998876432 22222221 111111111123589
Q ss_pred cEEeecccc-----cCCCCHH-HHHHHHHHHHhc--cCCeEEEEcCCC
Q 015771 106 DLVIASYVL-----GEVPSLQ-DRITIVRQLWDL--TRDVLVLVEPGT 145 (400)
Q Consensus 106 DLVias~~L-----~eL~~~~-~r~~~i~~Lw~~--~gG~LVlVE~Gt 145 (400)
|+|++.--. ..+.+.. ....++..+.+. +||.|++.....
T Consensus 287 D~Ii~DPP~~~~~~~~~~~~~~~~~~ll~~~~~~L~pgG~l~~~~~~~ 334 (385)
T 2b78_A 287 DIIIIDPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIASTNAA 334 (385)
T ss_dssp EEEEECCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEECCT
T ss_pred cEEEECCCCCCCChhhHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCC
Confidence 999984221 2333322 222344444443 799988776543
|
| >4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.14 E-value=1e-05 Score=80.97 Aligned_cols=111 Identities=13% Similarity=-0.066 Sum_probs=66.1
Q ss_pred CCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCCCCceeechhhhHhhhhcccCCCcccEEee
Q 015771 31 PAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDISKSEREHDLVIA 110 (400)
Q Consensus 31 p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~~~~~~~~~~~~~l~~~l~~~~~~~DLVia 110 (400)
+.+|||+|||+|..+.+++.. ..+|++||.|+.|++.|+..++...-...+.. .+....++...+.||+|++
T Consensus 215 g~~VLDlg~GtG~~sl~~a~~----ga~V~avDis~~al~~a~~n~~~ng~~~~~~~----~D~~~~l~~~~~~fD~Ii~ 286 (393)
T 4dmg_A 215 GERVLDVYSYVGGFALRAARK----GAYALAVDKDLEALGVLDQAALRLGLRVDIRH----GEALPTLRGLEGPFHHVLL 286 (393)
T ss_dssp TCEEEEESCTTTHHHHHHHHT----TCEEEEEESCHHHHHHHHHHHHHHTCCCEEEE----SCHHHHHHTCCCCEEEEEE
T ss_pred CCeEEEcccchhHHHHHHHHc----CCeEEEEECCHHHHHHHHHHHHHhCCCCcEEE----ccHHHHHHHhcCCCCEEEE
Confidence 579999999999998887752 23499999999999999988753211111111 1222112111234999998
Q ss_pred cccccCCC--CH----HHHHHHHHHHHhc--cCCeEEEEcCCCCCch
Q 015771 111 SYVLGEVP--SL----QDRITIVRQLWDL--TRDVLVLVEPGTPQGS 149 (400)
Q Consensus 111 s~~L~eL~--~~----~~r~~~i~~Lw~~--~gG~LVlVE~Gtp~Gf 149 (400)
.--...-. .. .....++..+.+. +||.|+++........
T Consensus 287 dpP~f~~~~~~~~~~~~~~~~ll~~a~~~LkpGG~Lv~~s~s~~~~~ 333 (393)
T 4dmg_A 287 DPPTLVKRPEELPAMKRHLVDLVREALRLLAEEGFLWLSSCSYHLRL 333 (393)
T ss_dssp CCCCCCSSGGGHHHHHHHHHHHHHHHHHTEEEEEEEEEEECCTTSCH
T ss_pred CCCcCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCCCCH
Confidence 53211000 00 1123455555543 7999998877654443
|
| >2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=98.12 E-value=1.2e-05 Score=81.81 Aligned_cols=111 Identities=14% Similarity=0.181 Sum_probs=72.0
Q ss_pred CCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCCCCceeechhhhHhhhhcc--cCCCcccE
Q 015771 30 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDIS--KSEREHDL 107 (400)
Q Consensus 30 ~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~~~~~~~~~~~~~l~~~l~--~~~~~~DL 107 (400)
.+.+|||+|||+|..+..+++.++ ...+++++|.|+.+++.++..++..+ ...+... ..+.. .++ ...+.||+
T Consensus 259 ~g~~VLDlgaG~G~~t~~la~~~~-~~~~v~a~D~s~~~l~~~~~~~~~~g-~~~v~~~--~~D~~-~~~~~~~~~~fD~ 333 (450)
T 2yxl_A 259 PGETVVDLAAAPGGKTTHLAELMK-NKGKIYAFDVDKMRMKRLKDFVKRMG-IKIVKPL--VKDAR-KAPEIIGEEVADK 333 (450)
T ss_dssp TTCEEEESSCTTCHHHHHHHHHTT-TCSEEEEECSCHHHHHHHHHHHHHTT-CCSEEEE--CSCTT-CCSSSSCSSCEEE
T ss_pred CcCEEEEeCCCccHHHHHHHHHcC-CCCEEEEEcCCHHHHHHHHHHHHHcC-CCcEEEE--EcChh-hcchhhccCCCCE
Confidence 346999999999999998888775 33689999999999999998876432 1111110 11121 111 12267999
Q ss_pred Eee------cccccCCCCHHH-------------HHHHHHHHHhc--cCCeEEEEcCCC
Q 015771 108 VIA------SYVLGEVPSLQD-------------RITIVRQLWDL--TRDVLVLVEPGT 145 (400)
Q Consensus 108 Via------s~~L~eL~~~~~-------------r~~~i~~Lw~~--~gG~LVlVE~Gt 145 (400)
|++ ..++...++..- ...++.++++. +||.||++....
T Consensus 334 Vl~D~Pcsg~g~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvy~tcs~ 392 (450)
T 2yxl_A 334 VLLDAPCTSSGTIGKNPELRWRLREDKINEMSQLQRELLESAARLVKPGGRLLYTTCSI 392 (450)
T ss_dssp EEEECCCCCGGGTTTSTTHHHHCCTTSHHHHHHHHHHHHHHHHTTEEEEEEEEEEESCC
T ss_pred EEEcCCCCCCeeeccChhhhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCC
Confidence 996 223443332210 13567777764 899999987754
|
| >3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A* | Back alignment and structure |
|---|
Probab=98.11 E-value=5.6e-06 Score=79.70 Aligned_cols=87 Identities=16% Similarity=0.154 Sum_probs=59.2
Q ss_pred HHHHHHHHHCCCCCCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCCCCceeechhhhHhhh
Q 015771 17 LVTESFARRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNK 96 (400)
Q Consensus 17 ~vL~el~~rlp~~~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~~~~~~~~~~~~~l~~ 96 (400)
.++..+...+......+|||+|||+|..+..+++. ..+|++||.|+.|++.++..+....++.++... ..
T Consensus 37 ~i~~~Iv~~l~~~~~~~VLEIG~G~G~lT~~La~~----~~~V~aVEid~~li~~a~~~~~~~~~v~vi~gD-----~l- 106 (295)
T 3gru_A 37 NFVNKAVESANLTKDDVVLEIGLGKGILTEELAKN----AKKVYVIEIDKSLEPYANKLKELYNNIEIIWGD-----AL- 106 (295)
T ss_dssp HHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHH----SSEEEEEESCGGGHHHHHHHHHHCSSEEEEESC-----TT-
T ss_pred HHHHHHHHhcCCCCcCEEEEECCCchHHHHHHHhc----CCEEEEEECCHHHHHHHHHHhccCCCeEEEECc-----hh-
Confidence 45555555554444579999999999999888864 358999999999999999887643343333321 21
Q ss_pred hcccCCCcccEEeeccc
Q 015771 97 DISKSEREHDLVIASYV 113 (400)
Q Consensus 97 ~l~~~~~~~DLVias~~ 113 (400)
.++.....||.|+++..
T Consensus 107 ~~~~~~~~fD~Iv~NlP 123 (295)
T 3gru_A 107 KVDLNKLDFNKVVANLP 123 (295)
T ss_dssp TSCGGGSCCSEEEEECC
T ss_pred hCCcccCCccEEEEeCc
Confidence 11223346999996643
|
| >2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54 | Back alignment and structure |
|---|
Probab=98.11 E-value=6.7e-06 Score=76.36 Aligned_cols=60 Identities=10% Similarity=-0.000 Sum_probs=44.3
Q ss_pred HHHHHHHHHCCC--CCCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcC
Q 015771 17 LVTESFARRLPG--FSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQG 78 (400)
Q Consensus 17 ~vL~el~~rlp~--~~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~ 78 (400)
..+.++...++. ..+.+|||+|||+|..+..++...+ ..+++++|.|+.|++.|+..+..
T Consensus 50 ~~~~~~~~~~~~~~~~~~~vLDlG~G~G~~~~~la~~~~--~~~v~gvD~s~~~~~~a~~~~~~ 111 (254)
T 2h00_A 50 HWVEDLIGHQDSDKSTLRRGIDIGTGASCIYPLLGATLN--GWYFLATEVDDMCFNYAKKNVEQ 111 (254)
T ss_dssp HHHHHHHCCCCGGGCCCCEEEEESCTTTTHHHHHHHHHH--CCEEEEEESCHHHHHHHHHHHHH
T ss_pred HHHHHHHhhccccCCCCCEEEEeCCChhHHHHHHHHhCC--CCeEEEEECCHHHHHHHHHHHHH
Confidence 344444443332 1457999999999988877776553 25899999999999999998764
|
| >3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A* | Back alignment and structure |
|---|
Probab=98.11 E-value=1.2e-05 Score=79.79 Aligned_cols=105 Identities=14% Similarity=0.127 Sum_probs=66.1
Q ss_pred CCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCC---CCCceeechhhhHhhhhcccCCCcccE
Q 015771 31 PAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK---DLPLIHSYNSIQALNKDISKSEREHDL 107 (400)
Q Consensus 31 p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~---~~~~~~~~~~~~~l~~~l~~~~~~~DL 107 (400)
+.+|||+|||+|+.+..++...+ ..+++++|.|+.|++.|+..+.... ++.+... +.. .++...++||+
T Consensus 218 ~~~vLD~gCGsG~~~i~~a~~~~--~~~v~g~Dis~~~l~~A~~n~~~~gl~~~i~~~~~-----D~~-~~~~~~~~fD~ 289 (373)
T 3tm4_A 218 GGSVLDPMCGSGTILIELALRRY--SGEIIGIEKYRKHLIGAEMNALAAGVLDKIKFIQG-----DAT-QLSQYVDSVDF 289 (373)
T ss_dssp SCCEEETTCTTCHHHHHHHHTTC--CSCEEEEESCHHHHHHHHHHHHHTTCGGGCEEEEC-----CGG-GGGGTCSCEEE
T ss_pred CCEEEEccCcCcHHHHHHHHhCC--CCeEEEEeCCHHHHHHHHHHHHHcCCCCceEEEEC-----Chh-hCCcccCCcCE
Confidence 46899999999999988876543 2379999999999999999886432 1222221 222 22334468999
Q ss_pred EeecccccCCC----CHHHH-HHHHHHHHhccCCeEEEEcC
Q 015771 108 VIASYVLGEVP----SLQDR-ITIVRQLWDLTRDVLVLVEP 143 (400)
Q Consensus 108 Vias~~L~eL~----~~~~r-~~~i~~Lw~~~gG~LVlVE~ 143 (400)
|++.-..++-. ..... ..+++.+.+..+|.+++|..
T Consensus 290 Ii~npPyg~r~~~~~~~~~ly~~~~~~l~r~l~g~~~~i~~ 330 (373)
T 3tm4_A 290 AISNLPYGLKIGKKSMIPDLYMKFFNELAKVLEKRGVFITT 330 (373)
T ss_dssp EEEECCCC------CCHHHHHHHHHHHHHHHEEEEEEEEES
T ss_pred EEECCCCCcccCcchhHHHHHHHHHHHHHHHcCCeEEEEEC
Confidence 99965544321 11222 34555555433677777754
|
| >3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A* | Back alignment and structure |
|---|
Probab=98.10 E-value=5.1e-06 Score=82.99 Aligned_cols=99 Identities=14% Similarity=0.173 Sum_probs=59.5
Q ss_pred CCCeEEEEccc------hhHHHH-HHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCCCCceeechhhhHhh--hhccc
Q 015771 30 SPAKVLDFGAG------TGSAFW-ALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALN--KDISK 100 (400)
Q Consensus 30 ~p~~VLDvG~G------~Gt~~~-Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~~~~~~~~~~~~~l~--~~l~~ 100 (400)
++.+|||+||| +|..+. .+...++ ..+|++||.|+.|. . ...++.++... ..++. ..+..
T Consensus 216 ~~~rVLDIGCG~~~~~~TGG~Sl~la~~~fP--~a~V~GVDiSp~m~------~-~~~rI~fv~GD--a~dlpf~~~l~~ 284 (419)
T 3sso_A 216 QQVRVLEIGVGGYKHPEWGGGSLRMWKSFFP--RGQIYGLDIMDKSH------V-DELRIRTIQGD--QNDAEFLDRIAR 284 (419)
T ss_dssp SCCEEEEECCSCTTCSSCCCHHHHHHHHHCT--TCEEEEEESSCCGG------G-CBTTEEEEECC--TTCHHHHHHHHH
T ss_pred CCCEEEEEecCCCcCCCCCHHHHHHHHHhCC--CCEEEEEECCHHHh------h-cCCCcEEEEec--ccccchhhhhhc
Confidence 56899999999 544444 4444555 36899999999983 1 11233333221 11110 00111
Q ss_pred CCCcccEEeecccccCCCCHHHHHHHHHHHHhc--cCCeEEEEcC
Q 015771 101 SEREHDLVIASYVLGEVPSLQDRITIVRQLWDL--TRDVLVLVEP 143 (400)
Q Consensus 101 ~~~~~DLVias~~L~eL~~~~~r~~~i~~Lw~~--~gG~LVlVE~ 143 (400)
..++||+|++..+ +. ..+....++++++. |||++|+.+.
T Consensus 285 ~d~sFDlVisdgs-H~---~~d~~~aL~el~rvLKPGGvlVi~Dl 325 (419)
T 3sso_A 285 RYGPFDIVIDDGS-HI---NAHVRTSFAALFPHVRPGGLYVIEDM 325 (419)
T ss_dssp HHCCEEEEEECSC-CC---HHHHHHHHHHHGGGEEEEEEEEEECG
T ss_pred ccCCccEEEECCc-cc---chhHHHHHHHHHHhcCCCeEEEEEec
Confidence 1468999998643 33 34556778888775 8999999764
|
| >1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A* | Back alignment and structure |
|---|
Probab=98.07 E-value=8.1e-06 Score=82.58 Aligned_cols=112 Identities=19% Similarity=0.174 Sum_probs=67.1
Q ss_pred HHHHHHHHHHCCCCCCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCC--CCCceeechhhhH
Q 015771 16 LLVTESFARRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK--DLPLIHSYNSIQA 93 (400)
Q Consensus 16 ~~vL~el~~rlp~~~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~--~~~~~~~~~~~~~ 93 (400)
...+..+...+......+|||+|||+|+.+..++.. ..+|+++|.|+.|++.|+..++... ++.++.. +
T Consensus 272 e~l~~~~~~~l~~~~~~~VLDlgcG~G~~~~~la~~----~~~V~gvD~s~~al~~A~~n~~~~~~~~v~f~~~-----d 342 (433)
T 1uwv_A 272 QKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQ----AASVVGVEGVPALVEKGQQNARLNGLQNVTFYHE-----N 342 (433)
T ss_dssp HHHHHHHHHHHTCCTTCEEEEESCTTTTTHHHHHTT----SSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEEC-----C
T ss_pred HHHHHHHHHhhcCCCCCEEEECCCCCCHHHHHHHhh----CCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEC-----C
Confidence 334444444443334479999999999999888843 4689999999999999998875321 2222221 1
Q ss_pred hhhhc---ccCCCcccEEeecccccCCCCHHHHHHHHHHHHhccCCeEEEEc
Q 015771 94 LNKDI---SKSEREHDLVIASYVLGEVPSLQDRITIVRQLWDLTRDVLVLVE 142 (400)
Q Consensus 94 l~~~l---~~~~~~~DLVias~~L~eL~~~~~r~~~i~~Lw~~~gG~LVlVE 142 (400)
+...+ +...++||+|++.---..+ .++++.|.+...+.+|.|.
T Consensus 343 ~~~~l~~~~~~~~~fD~Vv~dPPr~g~------~~~~~~l~~~~p~~ivyvs 388 (433)
T 1uwv_A 343 LEEDVTKQPWAKNGFDKVLLDPARAGA------AGVMQQIIKLEPIRIVYVS 388 (433)
T ss_dssp TTSCCSSSGGGTTCCSEEEECCCTTCC------HHHHHHHHHHCCSEEEEEE
T ss_pred HHHHhhhhhhhcCCCCEEEECCCCccH------HHHHHHHHhcCCCeEEEEE
Confidence 22111 1234579999984322211 1345555543335555553
|
| >3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A* | Back alignment and structure |
|---|
Probab=98.06 E-value=1.1e-05 Score=82.28 Aligned_cols=109 Identities=17% Similarity=0.033 Sum_probs=70.3
Q ss_pred CCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCC-CCceeechhhhHhhhhcccCCCcccEE
Q 015771 30 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKD-LPLIHSYNSIQALNKDISKSEREHDLV 108 (400)
Q Consensus 30 ~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~-~~~~~~~~~~~~l~~~l~~~~~~~DLV 108 (400)
.+.+|||+|||||..+..+++.++. ...|+++|+|+.|++.++..++...- +.++... ...+.. ...+.||+|
T Consensus 101 ~g~~VLDlgaGpG~kt~~LA~~~~~-~g~V~AvDis~~~l~~a~~n~~r~G~~v~~~~~D--a~~l~~---~~~~~FD~I 174 (464)
T 3m6w_A 101 PGERVLDLAAAPGGKTTHLAARMGG-KGLLLANEVDGKRVRGLLENVERWGAPLAVTQAP--PRALAE---AFGTYFHRV 174 (464)
T ss_dssp TTCEEEESSCTTCHHHHHHHHHTTT-CSEEEEECSCHHHHHHHHHHHHHHCCCCEEECSC--HHHHHH---HHCSCEEEE
T ss_pred CCCEEEEEcCCcCHHHHHHHHhCCC-CCEEEEEECCHHHHHHHHHHHHHcCCeEEEEECC--HHHhhh---hccccCCEE
Confidence 3479999999999999998888763 45899999999999999998865321 2222111 111111 124689999
Q ss_pred ee----c--ccccCCCCH------H-------HHHHHHHHHHhc--cCCeEEEEcCC
Q 015771 109 IA----S--YVLGEVPSL------Q-------DRITIVRQLWDL--TRDVLVLVEPG 144 (400)
Q Consensus 109 ia----s--~~L~eL~~~------~-------~r~~~i~~Lw~~--~gG~LVlVE~G 144 (400)
++ + -++..-++. . ....++..+++. +||.||+....
T Consensus 175 l~D~PcSg~G~~rr~pd~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvysTCs 231 (464)
T 3m6w_A 175 LLDAPCSGEGMFRKDREAARHWGPSAPKRMAEVQKALLAQASRLLGPGGVLVYSTCT 231 (464)
T ss_dssp EEECCCCCGGGTTTCTTSGGGCCTTHHHHHHHHHHHHHHHHHTTEEEEEEEEEEESC
T ss_pred EECCCcCCccccccChHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEecc
Confidence 95 1 122222211 0 114567777764 89999987653
|
| >2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51 | Back alignment and structure |
|---|
Probab=98.05 E-value=1.4e-05 Score=79.59 Aligned_cols=112 Identities=13% Similarity=0.037 Sum_probs=68.3
Q ss_pred CCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCC---CCCceeechhhhHhhhhcccCCCccc
Q 015771 30 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK---DLPLIHSYNSIQALNKDISKSEREHD 106 (400)
Q Consensus 30 ~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~---~~~~~~~~~~~~~l~~~l~~~~~~~D 106 (400)
.+.+|||+|||+|+.+..++.. ...+|+++|.|+.|++.|+..+.... ++.++... ..++...+.....+||
T Consensus 217 ~~~~VLDl~~G~G~~~~~la~~---g~~~v~~vD~s~~~l~~a~~n~~~n~~~~~v~~~~~d--~~~~~~~~~~~~~~fD 291 (396)
T 2as0_A 217 PGDRVLDVFTYTGGFAIHAAIA---GADEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGS--AFEEMEKLQKKGEKFD 291 (396)
T ss_dssp TTCEEEETTCTTTHHHHHHHHT---TCSEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESC--HHHHHHHHHHTTCCEE
T ss_pred CCCeEEEecCCCCHHHHHHHHC---CCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEECC--HHHHHHHHHhhCCCCC
Confidence 3479999999999998887753 24589999999999999998876432 12222211 1111111111246899
Q ss_pred EEeecccccCCCC--H----HHHHHHHHHHHhc--cCCeEEEEcCCCC
Q 015771 107 LVIASYVLGEVPS--L----QDRITIVRQLWDL--TRDVLVLVEPGTP 146 (400)
Q Consensus 107 LVias~~L~eL~~--~----~~r~~~i~~Lw~~--~gG~LVlVE~Gtp 146 (400)
+|++.--...... . .....++..+.+. +||.|+++.....
T Consensus 292 ~Vi~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~ 339 (396)
T 2as0_A 292 IVVLDPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCSCSQH 339 (396)
T ss_dssp EEEECCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEECCTT
T ss_pred EEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEECCCC
Confidence 9998432111110 0 2233455555554 7999999876543
|
| >1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=98.05 E-value=1.7e-05 Score=75.59 Aligned_cols=87 Identities=21% Similarity=0.192 Sum_probs=58.1
Q ss_pred HHHHHHHHHCCCCCCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCC---CCCceeechhhhH
Q 015771 17 LVTESFARRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK---DLPLIHSYNSIQA 93 (400)
Q Consensus 17 ~vL~el~~rlp~~~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~---~~~~~~~~~~~~~ 93 (400)
.++..+...++.-.+.+|||+|||+|..+..+++. ..+|++||.|+.|++.++..+.... ++.++.. +
T Consensus 15 ~i~~~i~~~~~~~~~~~VLDiG~G~G~lt~~L~~~----~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~-----D 85 (285)
T 1zq9_A 15 LIINSIIDKAALRPTDVVLEVGPGTGNMTVKLLEK----AKKVVACELDPRLVAELHKRVQGTPVASKLQVLVG-----D 85 (285)
T ss_dssp HHHHHHHHHTCCCTTCEEEEECCTTSTTHHHHHHH----SSEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEES-----C
T ss_pred HHHHHHHHhcCCCCCCEEEEEcCcccHHHHHHHhh----CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEc-----c
Confidence 34555555554445579999999999999888865 2489999999999999998876432 1222221 1
Q ss_pred hhhhcccCCCcccEEeeccccc
Q 015771 94 LNKDISKSEREHDLVIASYVLG 115 (400)
Q Consensus 94 l~~~l~~~~~~~DLVias~~L~ 115 (400)
.. .++ ...||+|+++...+
T Consensus 86 ~~-~~~--~~~fD~vv~nlpy~ 104 (285)
T 1zq9_A 86 VL-KTD--LPFFDTCVANLPYQ 104 (285)
T ss_dssp TT-TSC--CCCCSEEEEECCGG
T ss_pred ee-ccc--chhhcEEEEecCcc
Confidence 11 111 23799999865544
|
| >3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=98.04 E-value=9.6e-06 Score=76.38 Aligned_cols=64 Identities=16% Similarity=0.210 Sum_probs=47.0
Q ss_pred HHHHHHHHCCCCCCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCCCCce
Q 015771 18 VTESFARRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLI 85 (400)
Q Consensus 18 vL~el~~rlp~~~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~~~~~ 85 (400)
++..+...+..-...+|||+|||+|..+..+++ ...+|++||.|+.|++.+++.+....++.++
T Consensus 17 i~~~iv~~~~~~~~~~VLEIG~G~G~lt~~La~----~~~~V~avEid~~~~~~~~~~~~~~~~v~~i 80 (255)
T 3tqs_A 17 VLQKIVSAIHPQKTDTLVEIGPGRGALTDYLLT----ECDNLALVEIDRDLVAFLQKKYNQQKNITIY 80 (255)
T ss_dssp HHHHHHHHHCCCTTCEEEEECCTTTTTHHHHTT----TSSEEEEEECCHHHHHHHHHHHTTCTTEEEE
T ss_pred HHHHHHHhcCCCCcCEEEEEcccccHHHHHHHH----hCCEEEEEECCHHHHHHHHHHHhhCCCcEEE
Confidence 444444444333457999999999999988874 3468999999999999999988653343333
|
| >1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A* | Back alignment and structure |
|---|
Probab=98.04 E-value=2.4e-05 Score=77.70 Aligned_cols=111 Identities=14% Similarity=0.076 Sum_probs=67.8
Q ss_pred CCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCC--CCCceeechhhhHhhhhcccCCCcccE
Q 015771 30 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK--DLPLIHSYNSIQALNKDISKSEREHDL 107 (400)
Q Consensus 30 ~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~--~~~~~~~~~~~~~l~~~l~~~~~~~DL 107 (400)
.+.+|||+|||+|+.+..++.. ..+|+++|.|+.|++.|+..++... ++.++... ..++...+.....+||+
T Consensus 209 ~~~~VLDlg~G~G~~~~~la~~----~~~v~~vD~s~~~~~~a~~n~~~n~~~~~~~~~~d--~~~~~~~~~~~~~~fD~ 282 (382)
T 1wxx_A 209 RGERALDVFSYAGGFALHLALG----FREVVAVDSSAEALRRAEENARLNGLGNVRVLEAN--AFDLLRRLEKEGERFDL 282 (382)
T ss_dssp CEEEEEEETCTTTHHHHHHHHH----EEEEEEEESCHHHHHHHHHHHHHTTCTTEEEEESC--HHHHHHHHHHTTCCEEE
T ss_pred CCCeEEEeeeccCHHHHHHHHh----CCEEEEEECCHHHHHHHHHHHHHcCCCCceEEECC--HHHHHHHHHhcCCCeeE
Confidence 4479999999999998887764 3589999999999999998875432 22222211 11111111112468999
Q ss_pred EeecccccCCC--CH----HHHHHHHHHHHhc--cCCeEEEEcCCCC
Q 015771 108 VIASYVLGEVP--SL----QDRITIVRQLWDL--TRDVLVLVEPGTP 146 (400)
Q Consensus 108 Vias~~L~eL~--~~----~~r~~~i~~Lw~~--~gG~LVlVE~Gtp 146 (400)
|++.--..... .. .....++..+.+. +||.|++......
T Consensus 283 Ii~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 329 (382)
T 1wxx_A 283 VVLDPPAFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATASCSHH 329 (382)
T ss_dssp EEECCCCSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEECCTT
T ss_pred EEECCCCCCCChhHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCC
Confidence 99842211110 11 1223455555543 8999999876543
|
| >1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A | Back alignment and structure |
|---|
Probab=98.02 E-value=1.8e-05 Score=79.80 Aligned_cols=110 Identities=16% Similarity=0.174 Sum_probs=71.4
Q ss_pred CCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCC-CCCceeechhhhHhhhhcccCCCcccEE
Q 015771 30 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK-DLPLIHSYNSIQALNKDISKSEREHDLV 108 (400)
Q Consensus 30 ~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~-~~~~~~~~~~~~~l~~~l~~~~~~~DLV 108 (400)
.+.+|||+|||+|..+..+++..+. .+++++|.|+.+++.++..++..+ ++..+... ...+... ...++||+|
T Consensus 246 ~g~~VLDlgaG~G~~t~~la~~~~~--~~v~a~D~~~~~l~~~~~~~~~~g~~~~~~~~D--~~~~~~~--~~~~~fD~V 319 (429)
T 1sqg_A 246 NGEHILDLCAAPGGKTTHILEVAPE--AQVVAVDIDEQRLSRVYDNLKRLGMKATVKQGD--GRYPSQW--CGEQQFDRI 319 (429)
T ss_dssp TTCEEEEESCTTCHHHHHHHHHCTT--CEEEEEESSTTTHHHHHHHHHHTTCCCEEEECC--TTCTHHH--HTTCCEEEE
T ss_pred CcCeEEEECCCchHHHHHHHHHcCC--CEEEEECCCHHHHHHHHHHHHHcCCCeEEEeCc--hhhchhh--cccCCCCEE
Confidence 3479999999999999998888753 689999999999999998876432 12222111 0011100 123579999
Q ss_pred ee------cccccCCCCHH-------------HHHHHHHHHHhc--cCCeEEEEcCCC
Q 015771 109 IA------SYVLGEVPSLQ-------------DRITIVRQLWDL--TRDVLVLVEPGT 145 (400)
Q Consensus 109 ia------s~~L~eL~~~~-------------~r~~~i~~Lw~~--~gG~LVlVE~Gt 145 (400)
++ ..++...++.. ....++.++++. +||.||++....
T Consensus 320 l~D~Pcsg~g~~~~~p~~~~~~~~~~~~~l~~~q~~~L~~a~~~LkpGG~lvystcs~ 377 (429)
T 1sqg_A 320 LLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATCSV 377 (429)
T ss_dssp EEECCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEESCC
T ss_pred EEeCCCCcccccCCCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCC
Confidence 96 22344433321 113566777664 899999988654
|
| >3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium} | Back alignment and structure |
|---|
Probab=98.01 E-value=1.7e-05 Score=80.87 Aligned_cols=109 Identities=12% Similarity=0.001 Sum_probs=69.1
Q ss_pred CCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCC--CCCceeechhhhHhhhhcccCCCcccE
Q 015771 30 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK--DLPLIHSYNSIQALNKDISKSEREHDL 107 (400)
Q Consensus 30 ~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~--~~~~~~~~~~~~~l~~~l~~~~~~~DL 107 (400)
.+.+|||+|||||..+..+++..+ ....|+++|+|+.+++.++..++... ++.++... ...+.. ...+.||+
T Consensus 105 ~g~~VLDlcaGpGgkt~~lA~~~~-~~g~V~AvDis~~rl~~~~~n~~r~g~~nv~v~~~D--a~~l~~---~~~~~FD~ 178 (456)
T 3m4x_A 105 PGEKVLDLCAAPGGKSTQLAAQMK-GKGLLVTNEIFPKRAKILSENIERWGVSNAIVTNHA--PAELVP---HFSGFFDR 178 (456)
T ss_dssp TTCEEEESSCTTCHHHHHHHHHHT-TCSEEEEECSSHHHHHHHHHHHHHHTCSSEEEECCC--HHHHHH---HHTTCEEE
T ss_pred CCCEEEEECCCcCHHHHHHHHHcC-CCCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCC--HHHhhh---hccccCCE
Confidence 347999999999999888887765 34689999999999999998886532 22222211 111111 12468999
Q ss_pred Eeecc---cccCCC-CHHH---------------HHHHHHHHHhc--cCCeEEEEcCC
Q 015771 108 VIASY---VLGEVP-SLQD---------------RITIVRQLWDL--TRDVLVLVEPG 144 (400)
Q Consensus 108 Vias~---~L~eL~-~~~~---------------r~~~i~~Lw~~--~gG~LVlVE~G 144 (400)
|++.- .+..+. +++. ...++...++. +||.||.....
T Consensus 179 Il~DaPCSg~G~~rr~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs 236 (456)
T 3m4x_A 179 IVVDAPCSGEGMFRKDPNAIKEWTEESPLYCQKRQQEILSSAIKMLKNKGQLIYSTCT 236 (456)
T ss_dssp EEEECCCCCGGGTTTCHHHHHHCCTTHHHHHHHHHHHHHHHHHHTEEEEEEEEEEESC
T ss_pred EEECCCCCCccccccCHHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEEee
Confidence 98732 111111 1111 12566677664 89999987653
|
| >2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=97.99 E-value=1.4e-05 Score=76.89 Aligned_cols=86 Identities=16% Similarity=0.086 Sum_probs=55.0
Q ss_pred HHHHHHHHCCCCCCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCC--CCCCceeechhhhHhh
Q 015771 18 VTESFARRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGP--KDLPLIHSYNSIQALN 95 (400)
Q Consensus 18 vL~el~~rlp~~~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~--~~~~~~~~~~~~~~l~ 95 (400)
++..+...+....+.+|||+|||+|..+..+++ ...+|++||.|+.|++.++..+... .++.++. .+..
T Consensus 30 i~~~i~~~~~~~~~~~VLDiG~G~G~lt~~La~----~~~~v~~vDi~~~~~~~a~~~~~~~~~~~v~~~~-----~D~~ 100 (299)
T 2h1r_A 30 ILDKIIYAAKIKSSDIVLEIGCGTGNLTVKLLP----LAKKVITIDIDSRMISEVKKRCLYEGYNNLEVYE-----GDAI 100 (299)
T ss_dssp HHHHHHHHHCCCTTCEEEEECCTTSTTHHHHTT----TSSEEEEECSCHHHHHHHHHHHHHTTCCCEEC---------CC
T ss_pred HHHHHHHhcCCCCcCEEEEEcCcCcHHHHHHHh----cCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEE-----Cchh
Confidence 344444444333457999999999999988774 3468999999999999999877422 1222211 1221
Q ss_pred hhcccCCCcccEEeeccccc
Q 015771 96 KDISKSEREHDLVIASYVLG 115 (400)
Q Consensus 96 ~~l~~~~~~~DLVias~~L~ 115 (400)
.+ ....||+|+++...+
T Consensus 101 -~~--~~~~~D~Vv~n~py~ 117 (299)
T 2h1r_A 101 -KT--VFPKFDVCTANIPYK 117 (299)
T ss_dssp -SS--CCCCCSEEEEECCGG
T ss_pred -hC--CcccCCEEEEcCCcc
Confidence 11 234799999864433
|
| >2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.99 E-value=1.5e-05 Score=81.64 Aligned_cols=107 Identities=15% Similarity=0.124 Sum_probs=69.0
Q ss_pred CCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCC--CCCceeechhhhHhhhhccc-CCCcccE
Q 015771 31 PAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK--DLPLIHSYNSIQALNKDISK-SEREHDL 107 (400)
Q Consensus 31 p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~--~~~~~~~~~~~~~l~~~l~~-~~~~~DL 107 (400)
+.+|||+|||||..+..+++..+ ....|+++|.|+.|++.++..++... ++.++.. +.. .++. ..+.||+
T Consensus 118 g~~VLDl~aGpG~kt~~lA~~~~-~~g~V~avDis~~~l~~~~~n~~r~g~~nv~~~~~-----D~~-~~~~~~~~~fD~ 190 (479)
T 2frx_A 118 PQRVMDVAAAPGSKTTQISARMN-NEGAILANEFSASRVKVLHANISRCGISNVALTHF-----DGR-VFGAAVPEMFDA 190 (479)
T ss_dssp CSEEEESSCTTSHHHHHHHHHTT-TCSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECC-----CST-THHHHSTTCEEE
T ss_pred CCEEEEeCCCCCHHHHHHHHhCC-CCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeC-----CHH-HhhhhccccCCE
Confidence 46999999999999998888775 34689999999999999998876432 2222221 111 1111 2457999
Q ss_pred Eeec------ccccCCCC------HH-------HHHHHHHHHHhc--cCCeEEEEcCC
Q 015771 108 VIAS------YVLGEVPS------LQ-------DRITIVRQLWDL--TRDVLVLVEPG 144 (400)
Q Consensus 108 Vias------~~L~eL~~------~~-------~r~~~i~~Lw~~--~gG~LVlVE~G 144 (400)
|++. -++...++ .. ....++.++++. +||.||+....
T Consensus 191 Il~D~PcSg~G~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~LvysTcs 248 (479)
T 2frx_A 191 ILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPGGTLVYSTCT 248 (479)
T ss_dssp EEEECCCCCGGGGGTCTTSSSSCCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESC
T ss_pred EEECCCcCCcccccCCHHHHhhcCHhHHHHHHHHHHHHHHHHHHhcCCCCEEEEeccc
Confidence 9971 12322221 11 123456666654 89999998654
|
| >2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A* | Back alignment and structure |
|---|
Probab=97.97 E-value=2.3e-06 Score=82.69 Aligned_cols=108 Identities=15% Similarity=0.164 Sum_probs=57.6
Q ss_pred HHHHHHCCCCCC-CeEEEEccchhHHHHHHHHHCCCCCcEEEEEeC----CHHHHHHHHHhhcCCCCCCceeechhhh-H
Q 015771 20 ESFARRLPGFSP-AKVLDFGAGTGSAFWALREVWPRSLEKVNLVEP----SQSMQRAGQSLMQGPKDLPLIHSYNSIQ-A 93 (400)
Q Consensus 20 ~el~~rlp~~~p-~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~----S~~ml~~a~~ll~~~~~~~~~~~~~~~~-~ 93 (400)
.++..+ ..++| .+|||+|||||..+..+++. .+|++||. ++.+++.. ..+.. ..+.+... .. +
T Consensus 72 ~~i~~~-~~~~~g~~VLDlGcG~G~~s~~la~~-----~~V~gvD~~~~~~~~~~~~~--~~~~~-~~~~v~~~--~~~D 140 (305)
T 2p41_A 72 RWFVER-NLVTPEGKVVDLGCGRGGWSYYCGGL-----KNVREVKGLTKGGPGHEEPI--PMSTY-GWNLVRLQ--SGVD 140 (305)
T ss_dssp HHHHHT-TSSCCCEEEEEETCTTSHHHHHHHTS-----TTEEEEEEECCCSTTSCCCC--CCCST-TGGGEEEE--CSCC
T ss_pred HHHHHc-CCCCCCCEEEEEcCCCCHHHHHHHhc-----CCEEEEeccccCchhHHHHH--Hhhhc-CCCCeEEE--eccc
Confidence 334444 33454 69999999999998887743 46999999 56543211 01111 01212110 01 1
Q ss_pred hhhhcccCCCcccEEeecccccCCCCH---HHH-HHHHHHHHh--ccCCeEEEEc
Q 015771 94 LNKDISKSEREHDLVIASYVLGEVPSL---QDR-ITIVRQLWD--LTRDVLVLVE 142 (400)
Q Consensus 94 l~~~l~~~~~~~DLVias~~L~eL~~~---~~r-~~~i~~Lw~--~~gG~LVlVE 142 (400)
+. ..+..+||+|++..+++ .... ..+ ..++..+.+ +|||.||+-.
T Consensus 141 ~~---~l~~~~fD~V~sd~~~~-~g~~~~d~~~~l~~L~~~~~~LkpGG~~v~kv 191 (305)
T 2p41_A 141 VF---FIPPERCDTLLCDIGES-SPNPTVEAGRTLRVLNLVENWLSNNTQFCVKV 191 (305)
T ss_dssp TT---TSCCCCCSEEEECCCCC-CSSHHHHHHHHHHHHHHHHHHCCTTCEEEEEE
T ss_pred cc---cCCcCCCCEEEECCccc-cCcchhhHHHHHHHHHHHHHHhCCCCEEEEEe
Confidence 11 11345899999977664 2211 111 133433322 3899888743
|
| >3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=97.97 E-value=2.1e-05 Score=78.45 Aligned_cols=110 Identities=13% Similarity=0.046 Sum_probs=65.9
Q ss_pred CCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCC----CCCceeechhhhHhhhhcccCCCcc
Q 015771 30 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK----DLPLIHSYNSIQALNKDISKSEREH 105 (400)
Q Consensus 30 ~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~----~~~~~~~~~~~~~l~~~l~~~~~~~ 105 (400)
.+.+|||+|||+|+.+..++.. ...+|++||.|+.+++.|+..++... ++.++... ..++...+.....+|
T Consensus 220 ~~~~VLDl~cG~G~~sl~la~~---g~~~V~~vD~s~~al~~a~~n~~~ngl~~~~v~~~~~D--~~~~~~~~~~~~~~f 294 (396)
T 3c0k_A 220 ENKRVLNCFSYTGGFAVSALMG---GCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDD--VFKLLRTYRDRGEKF 294 (396)
T ss_dssp TTCEEEEESCTTCSHHHHHHHT---TCSEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEESC--HHHHHHHHHHTTCCE
T ss_pred CCCeEEEeeccCCHHHHHHHHC---CCCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECC--HHHHHHHHHhcCCCC
Confidence 3479999999999998887753 24589999999999999998876421 11122211 111111111124589
Q ss_pred cEEeeccccc-----CCC-CHHHHHHHHHHHHhc--cCCeEEEEcCC
Q 015771 106 DLVIASYVLG-----EVP-SLQDRITIVRQLWDL--TRDVLVLVEPG 144 (400)
Q Consensus 106 DLVias~~L~-----eL~-~~~~r~~~i~~Lw~~--~gG~LVlVE~G 144 (400)
|+|++.--.. .+. .......++....+. +||.|++....
T Consensus 295 D~Ii~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 341 (396)
T 3c0k_A 295 DVIVMDPPKFVENKSQLMGACRGYKDINMLAIQLLNEGGILLTFSCS 341 (396)
T ss_dssp EEEEECCSSTTTCSSSSSCCCTHHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred CEEEECCCCCCCChhHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCC
Confidence 9999853110 010 012333455555543 79999887654
|
| >3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=97.97 E-value=3.1e-06 Score=76.03 Aligned_cols=45 Identities=16% Similarity=0.192 Sum_probs=33.1
Q ss_pred HHHHHHHCCCCC-CCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHH
Q 015771 19 TESFARRLPGFS-PAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQS 67 (400)
Q Consensus 19 L~el~~rlp~~~-p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ 67 (400)
|.|+..+...++ ..+|||+|||||..+..+++. ..+|++||.|+.
T Consensus 13 L~ei~~~~~~~~~g~~VLDlG~G~G~~s~~la~~----~~~V~gvD~~~~ 58 (191)
T 3dou_A 13 LEFLLDRYRVVRKGDAVIEIGSSPGGWTQVLNSL----ARKIISIDLQEM 58 (191)
T ss_dssp HHHHHHHHCCSCTTCEEEEESCTTCHHHHHHTTT----CSEEEEEESSCC
T ss_pred HHHHHHHcCCCCCCCEEEEEeecCCHHHHHHHHc----CCcEEEEecccc
Confidence 344444444343 379999999999998887754 468999999974
|
| >3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A* | Back alignment and structure |
|---|
Probab=97.96 E-value=7.2e-06 Score=87.96 Aligned_cols=107 Identities=13% Similarity=0.103 Sum_probs=65.6
Q ss_pred CCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCC----CCCceeechhhhHhhhhcccCCCcc
Q 015771 30 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK----DLPLIHSYNSIQALNKDISKSEREH 105 (400)
Q Consensus 30 ~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~----~~~~~~~~~~~~~l~~~l~~~~~~~ 105 (400)
++.+|||+|||+|..+.+++.. ...+|++||.|+.|++.|+..++... ++.++.. +....++...++|
T Consensus 539 ~g~~VLDlg~GtG~~sl~aa~~---ga~~V~aVD~s~~al~~a~~N~~~ngl~~~~v~~i~~-----D~~~~l~~~~~~f 610 (703)
T 3v97_A 539 KGKDFLNLFSYTGSATVHAGLG---GARSTTTVDMSRTYLEWAERNLRLNGLTGRAHRLIQA-----DCLAWLREANEQF 610 (703)
T ss_dssp TTCEEEEESCTTCHHHHHHHHT---TCSEEEEEESCHHHHHHHHHHHHHTTCCSTTEEEEES-----CHHHHHHHCCCCE
T ss_pred CCCcEEEeeechhHHHHHHHHC---CCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEec-----CHHHHHHhcCCCc
Confidence 3479999999999988877652 34579999999999999999875432 1122221 1221122234689
Q ss_pred cEEeecccc---cC----CCC-HHHHHHHHHHHHhc--cCCeEEEEcCC
Q 015771 106 DLVIASYVL---GE----VPS-LQDRITIVRQLWDL--TRDVLVLVEPG 144 (400)
Q Consensus 106 DLVias~~L---~e----L~~-~~~r~~~i~~Lw~~--~gG~LVlVE~G 144 (400)
|+|++.--- +. ..+ ......++..+.+. +||.|++.-..
T Consensus 611 D~Ii~DPP~f~~~~~~~~~~~~~~~~~~ll~~a~~~LkpgG~L~~s~~~ 659 (703)
T 3v97_A 611 DLIFIDPPTFSNSKRMEDAFDVQRDHLALMKDLKRLLRAGGTIMFSNNK 659 (703)
T ss_dssp EEEEECCCSBC-------CCBHHHHHHHHHHHHHHHEEEEEEEEEEECC
T ss_pred cEEEECCccccCCccchhHHHHHHHHHHHHHHHHHhcCCCcEEEEEECC
Confidence 999984311 10 111 12233455555443 79999966553
|
| >1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A* | Back alignment and structure |
|---|
Probab=97.90 E-value=1.8e-05 Score=76.28 Aligned_cols=89 Identities=12% Similarity=0.105 Sum_probs=57.6
Q ss_pred HHHHHHCCCCCCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCC-CCCceeechhhhHhhhhc
Q 015771 20 ESFARRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK-DLPLIHSYNSIQALNKDI 98 (400)
Q Consensus 20 ~el~~rlp~~~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~-~~~~~~~~~~~~~l~~~l 98 (400)
.++...+..-.+.+|||+|||+|..+.++++.++ ..+++++|.|+.|++.|+..+.... ++.+++.. ..++...+
T Consensus 16 ~e~l~~L~~~~g~~vLD~g~G~G~~s~~la~~~~--~~~VigvD~d~~al~~A~~~~~~~g~~v~~v~~d--~~~l~~~l 91 (301)
T 1m6y_A 16 REVIEFLKPEDEKIILDCTVGEGGHSRAILEHCP--GCRIIGIDVDSEVLRIAEEKLKEFSDRVSLFKVS--YREADFLL 91 (301)
T ss_dssp HHHHHHHCCCTTCEEEETTCTTSHHHHHHHHHCT--TCEEEEEESCHHHHHHHHHHTGGGTTTEEEEECC--GGGHHHHH
T ss_pred HHHHHhcCCCCCCEEEEEeCCcCHHHHHHHHHCC--CCEEEEEECCHHHHHHHHHHHHhcCCcEEEEECC--HHHHHHHH
Confidence 3343433322347999999999999999988875 3689999999999999999886532 33333332 11221111
Q ss_pred cc-CCCcccEEeecc
Q 015771 99 SK-SEREHDLVIASY 112 (400)
Q Consensus 99 ~~-~~~~~DLVias~ 112 (400)
.. ...+||.|++..
T Consensus 92 ~~~g~~~~D~Vl~D~ 106 (301)
T 1m6y_A 92 KTLGIEKVDGILMDL 106 (301)
T ss_dssp HHTTCSCEEEEEEEC
T ss_pred HhcCCCCCCEEEEcC
Confidence 11 114799998754
|
| >1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A | Back alignment and structure |
|---|
Probab=97.90 E-value=2.2e-05 Score=73.15 Aligned_cols=60 Identities=10% Similarity=0.142 Sum_probs=47.6
Q ss_pred HHHHHHHHHHCCCCCCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCC
Q 015771 16 LLVTESFARRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGP 79 (400)
Q Consensus 16 ~~vL~el~~rlp~~~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~ 79 (400)
..++..+...+....+.+|||+|||+|..+..+++.. .+++++|.|+.|++.++..+...
T Consensus 16 ~~~~~~i~~~~~~~~~~~VLDiG~G~G~lt~~l~~~~----~~v~~vD~~~~~~~~a~~~~~~~ 75 (244)
T 1qam_A 16 KHNIDKIMTNIRLNEHDNIFEIGSGKGHFTLELVQRC----NFVTAIEIDHKLCKTTENKLVDH 75 (244)
T ss_dssp HHHHHHHHTTCCCCTTCEEEEECCTTSHHHHHHHHHS----SEEEEECSCHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHhCCCCCCCEEEEEeCCchHHHHHHHHcC----CeEEEEECCHHHHHHHHHhhccC
Confidence 4566666666544445799999999999998888653 58999999999999999887643
|
| >3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.88 E-value=5.2e-05 Score=74.92 Aligned_cols=63 Identities=19% Similarity=0.185 Sum_probs=45.6
Q ss_pred hHHHHHHHHHHHHHHCCCCCCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcC
Q 015771 11 CLLFTLLVTESFARRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQG 78 (400)
Q Consensus 11 ~Ya~~~~vL~el~~rlp~~~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~ 78 (400)
|..........+...+.. .+.+|||+|||+|+.+.+++. ...+|++||.|+.|++.|+..++.
T Consensus 195 n~~~~~~l~~~~~~~~~~-~~~~vLDl~cG~G~~~l~la~----~~~~V~gvd~~~~ai~~a~~n~~~ 257 (369)
T 3bt7_A 195 NAAMNIQMLEWALDVTKG-SKGDLLELYCGNGNFSLALAR----NFDRVLATEIAKPSVAAAQYNIAA 257 (369)
T ss_dssp BHHHHHHHHHHHHHHTTT-CCSEEEEESCTTSHHHHHHGG----GSSEEEEECCCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhhc-CCCEEEEccCCCCHHHHHHHh----cCCEEEEEECCHHHHHHHHHHHHH
Confidence 333334444444444332 357899999999999988775 235899999999999999988753
|
| >2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A* | Back alignment and structure |
|---|
Probab=97.84 E-value=3.3e-05 Score=78.01 Aligned_cols=95 Identities=13% Similarity=0.054 Sum_probs=58.8
Q ss_pred CCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCCCCceeechhhhHhhhhcccCCCcccEEee
Q 015771 31 PAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDISKSEREHDLVIA 110 (400)
Q Consensus 31 p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~~~~~~~~~~~~~l~~~l~~~~~~~DLVia 110 (400)
..+|||+|||+|+.+..++.. ..+|+++|.|+.|++.|+..+... ++. +... ..+....+ ..+||+|++
T Consensus 291 ~~~VLDlgcG~G~~sl~la~~----~~~V~gvD~s~~ai~~A~~n~~~n-gl~-v~~~--~~d~~~~~---~~~fD~Vv~ 359 (425)
T 2jjq_A 291 GEKILDMYSGVGTFGIYLAKR----GFNVKGFDSNEFAIEMARRNVEIN-NVD-AEFE--VASDREVS---VKGFDTVIV 359 (425)
T ss_dssp SSEEEEETCTTTHHHHHHHHT----TCEEEEEESCHHHHHHHHHHHHHH-TCC-EEEE--ECCTTTCC---CTTCSEEEE
T ss_pred CCEEEEeeccchHHHHHHHHc----CCEEEEEECCHHHHHHHHHHHHHc-CCc-EEEE--ECChHHcC---ccCCCEEEE
Confidence 479999999999999888753 358999999999999999887532 222 1110 11222111 127999998
Q ss_pred cccccCCCCHHHHHHHHHHHHh-ccCCeEEEE
Q 015771 111 SYVLGEVPSLQDRITIVRQLWD-LTRDVLVLV 141 (400)
Q Consensus 111 s~~L~eL~~~~~r~~~i~~Lw~-~~gG~LVlV 141 (400)
.--...+. . .+++.+.. +++|.+++.
T Consensus 360 dPPr~g~~--~---~~~~~l~~l~p~givyvs 386 (425)
T 2jjq_A 360 DPPRAGLH--P---RLVKRLNREKPGVIVYVS 386 (425)
T ss_dssp CCCTTCSC--H---HHHHHHHHHCCSEEEEEE
T ss_pred cCCccchH--H---HHHHHHHhcCCCcEEEEE
Confidence 54432221 1 23333322 367766654
|
| >2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A* | Back alignment and structure |
|---|
Probab=97.83 E-value=2.9e-05 Score=75.78 Aligned_cols=99 Identities=14% Similarity=0.062 Sum_probs=62.8
Q ss_pred CCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCCCCceeechhhhHhhhhcccCCCcccEEe
Q 015771 30 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDISKSEREHDLVI 109 (400)
Q Consensus 30 ~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~~~~~~~~~~~~~l~~~l~~~~~~~DLVi 109 (400)
.+.+|||+|||+|..+.. +. ...+|+++|.|+.+++.++..++...-...+... ..+... . . .+||+|+
T Consensus 195 ~~~~VLDlg~G~G~~~l~-a~----~~~~V~~vD~s~~ai~~a~~n~~~n~l~~~v~~~--~~D~~~-~--~-~~fD~Vi 263 (336)
T 2yx1_A 195 LNDVVVDMFAGVGPFSIA-CK----NAKKIYAIDINPHAIELLKKNIKLNKLEHKIIPI--LSDVRE-V--D-VKGNRVI 263 (336)
T ss_dssp TTCEEEETTCTTSHHHHH-TT----TSSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEE--ESCGGG-C--C-CCEEEEE
T ss_pred CCCEEEEccCccCHHHHh-cc----CCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEE--ECChHH-h--c-CCCcEEE
Confidence 347999999999999887 64 3568999999999999999887643211111110 111221 1 2 6899999
Q ss_pred ecccccCCCCHHHHHHHHHHHHh--ccCCeEEEEcCCCC
Q 015771 110 ASYVLGEVPSLQDRITIVRQLWD--LTRDVLVLVEPGTP 146 (400)
Q Consensus 110 as~~L~eL~~~~~r~~~i~~Lw~--~~gG~LVlVE~Gtp 146 (400)
+..--. . ..++..+.+ ++||.|++.+....
T Consensus 264 ~dpP~~----~---~~~l~~~~~~L~~gG~l~~~~~~~~ 295 (336)
T 2yx1_A 264 MNLPKF----A---HKFIDKALDIVEEGGVIHYYTIGKD 295 (336)
T ss_dssp ECCTTT----G---GGGHHHHHHHEEEEEEEEEEEEESS
T ss_pred ECCcHh----H---HHHHHHHHHHcCCCCEEEEEEeecC
Confidence 852110 1 133444443 27999999877554
|
| >3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A* | Back alignment and structure |
|---|
Probab=97.82 E-value=3e-05 Score=73.62 Aligned_cols=56 Identities=20% Similarity=0.270 Sum_probs=42.6
Q ss_pred HHHHHHHHCCCCCCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcC
Q 015771 18 VTESFARRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQG 78 (400)
Q Consensus 18 vL~el~~rlp~~~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~ 78 (400)
++..+.+.+..-.. +|||+|||+|..+..+++. ..+|++||.|+.|++.+++.+..
T Consensus 35 i~~~Iv~~~~~~~~-~VLEIG~G~G~lt~~L~~~----~~~V~avEid~~~~~~l~~~~~~ 90 (271)
T 3fut_A 35 HLRRIVEAARPFTG-PVFEVGPGLGALTRALLEA----GAEVTAIEKDLRLRPVLEETLSG 90 (271)
T ss_dssp HHHHHHHHHCCCCS-CEEEECCTTSHHHHHHHHT----TCCEEEEESCGGGHHHHHHHTTT
T ss_pred HHHHHHHhcCCCCC-eEEEEeCchHHHHHHHHHc----CCEEEEEECCHHHHHHHHHhcCC
Confidence 33444444333334 9999999999999988864 35899999999999999988763
|
| >3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B* | Back alignment and structure |
|---|
Probab=97.81 E-value=6e-05 Score=70.59 Aligned_cols=56 Identities=25% Similarity=0.271 Sum_probs=43.6
Q ss_pred HHHHHHHHHCCCCCCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHh
Q 015771 17 LVTESFARRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSL 75 (400)
Q Consensus 17 ~vL~el~~rlp~~~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~l 75 (400)
.++..+.+.++...+.+|||+|||+|..+..+++. ...++++||.|+.|++.++..
T Consensus 18 ~i~~~iv~~~~~~~~~~VLDiG~G~G~lt~~L~~~---~~~~v~avEid~~~~~~~~~~ 73 (249)
T 3ftd_A 18 GVLKKIAEELNIEEGNTVVEVGGGTGNLTKVLLQH---PLKKLYVIELDREMVENLKSI 73 (249)
T ss_dssp HHHHHHHHHTTCCTTCEEEEEESCHHHHHHHHTTS---CCSEEEEECCCHHHHHHHTTS
T ss_pred HHHHHHHHhcCCCCcCEEEEEcCchHHHHHHHHHc---CCCeEEEEECCHHHHHHHHhc
Confidence 45555555554445579999999999999888743 136899999999999999876
|
| >3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=97.70 E-value=7.4e-05 Score=71.20 Aligned_cols=59 Identities=10% Similarity=0.122 Sum_probs=42.9
Q ss_pred HHHHHHHHCCCCCCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhh
Q 015771 18 VTESFARRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLM 76 (400)
Q Consensus 18 vL~el~~rlp~~~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll 76 (400)
++..+...+......+|||+|||+|..+..+++..+....+|++||.|+.|++.++...
T Consensus 30 i~~~iv~~~~~~~~~~VLEIG~G~G~lt~~La~~~~~~~~~V~avDid~~~l~~a~~~~ 88 (279)
T 3uzu_A 30 VIDAIVAAIRPERGERMVEIGPGLGALTGPVIARLATPGSPLHAVELDRDLIGRLEQRF 88 (279)
T ss_dssp HHHHHHHHHCCCTTCEEEEECCTTSTTHHHHHHHHCBTTBCEEEEECCHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCcCEEEEEccccHHHHHHHHHhCCCcCCeEEEEECCHHHHHHHHHhc
Confidence 34444444433345799999999999998888654311234999999999999998874
|
| >2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45 | Back alignment and structure |
|---|
Probab=97.66 E-value=6.9e-05 Score=75.92 Aligned_cols=123 Identities=15% Similarity=0.196 Sum_probs=73.8
Q ss_pred CCeEEEEccchhHHHHHHHHHCCC-----------CCcEEEEEeCCHHHHHHHHHhhc--CCC--CCCceeechhhhHhh
Q 015771 31 PAKVLDFGAGTGSAFWALREVWPR-----------SLEKVNLVEPSQSMQRAGQSLMQ--GPK--DLPLIHSYNSIQALN 95 (400)
Q Consensus 31 p~~VLDvG~G~Gt~~~Al~~~~~~-----------~~~~v~~vD~S~~ml~~a~~ll~--~~~--~~~~~~~~~~~~~l~ 95 (400)
..+|||.|||+|..+.++.+.... ....++++|.++.|+++|+..+. ... +..+.... .+.
T Consensus 172 ~~~VlDpacGsG~fl~~~~~~l~~~~~~~~~~~~~~~~~i~G~Ei~~~~~~lA~~nl~l~g~~~~~~~i~~gD----~l~ 247 (445)
T 2okc_A 172 GETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGIGTDRSPIVCED----SLE 247 (445)
T ss_dssp TCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTTCCSSCCSEEECC----TTT
T ss_pred CCEEeccCCCcchHHHHHHHHHHHhcCCHHHHHhhcCeEEEEEeCCHHHHHHHHHHHHHhCCCcCCCCEeeCC----CCC
Confidence 469999999999998887765311 12469999999999999987653 221 12222211 011
Q ss_pred hhcccCCCcccEEeecccccCCCCH--------------HHHHHHHHHHHhc--cCCeEEEEcCCCC--CchHHHHHHHH
Q 015771 96 KDISKSEREHDLVIASYVLGEVPSL--------------QDRITIVRQLWDL--TRDVLVLVEPGTP--QGSSIISQMRS 157 (400)
Q Consensus 96 ~~l~~~~~~~DLVias~~L~eL~~~--------------~~r~~~i~~Lw~~--~gG~LVlVE~Gtp--~Gf~~I~~aR~ 157 (400)
.+ ...+||+|++.--++..... ..-..++..+.+. +||.+++|-|... .|. .-..+|+
T Consensus 248 --~~-~~~~fD~Iv~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~gG~~a~V~p~~~L~~~~-~~~~iR~ 323 (445)
T 2okc_A 248 --KE-PSTLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTGGRAAVVLPDNVLFEAG-AGETIRK 323 (445)
T ss_dssp --SC-CSSCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEEEEEEEEEEHHHHHCST-HHHHHHH
T ss_pred --Cc-ccCCcCEEEECCCCCCcccccchhhHhhcCCCCcchHHHHHHHHHHHhccCCEEEEEECCcccccCc-HHHHHHH
Confidence 11 23489999997544432111 1113456665553 7999999976421 111 2356788
Q ss_pred HHHH
Q 015771 158 HILW 161 (400)
Q Consensus 158 ~lL~ 161 (400)
.|+.
T Consensus 324 ~L~~ 327 (445)
T 2okc_A 324 RLLQ 327 (445)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 8873
|
| >3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=97.52 E-value=0.00051 Score=68.35 Aligned_cols=111 Identities=8% Similarity=0.033 Sum_probs=66.2
Q ss_pred CCCC-CeEEEEccchhHHHHHHHHHCCC------------------------------------CCcEEEEEeCCHHHHH
Q 015771 28 GFSP-AKVLDFGAGTGSAFWALREVWPR------------------------------------SLEKVNLVEPSQSMQR 70 (400)
Q Consensus 28 ~~~p-~~VLDvG~G~Gt~~~Al~~~~~~------------------------------------~~~~v~~vD~S~~ml~ 70 (400)
.|.+ ..|||.+||+|+.++.++..-.+ ...+++++|.|+.|++
T Consensus 191 ~~~~~~~llDp~CGSGt~lIEAa~~a~~iapg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~v~GvDid~~al~ 270 (384)
T 3ldg_A 191 NWFPDKPFVDPTCGSGTFCIEAAMIGMNIAPGFNRDFAFEEWPWVDEALVTRVRNEADEQADYDIQLDISGFDFDGRMVE 270 (384)
T ss_dssp TCCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEEEEESCHHHHH
T ss_pred CCCCCCeEEEeCCcCCHHHHHHHHHhcCcCCCccccchhhhhccCCHHHHHHHHHHHHHhhhccCCceEEEEECCHHHHH
Confidence 4554 58999999999998866543211 1146999999999999
Q ss_pred HHHHhhcCCCCCCceeechhhhHhhhhcccCCCcccEEeec--ccccCCCCHHHHHHHHH---HHHhc-cCCeEEEEcC
Q 015771 71 AGQSLMQGPKDLPLIHSYNSIQALNKDISKSEREHDLVIAS--YVLGEVPSLQDRITIVR---QLWDL-TRDVLVLVEP 143 (400)
Q Consensus 71 ~a~~ll~~~~~~~~~~~~~~~~~l~~~l~~~~~~~DLVias--~~L~eL~~~~~r~~~i~---~Lw~~-~gG~LVlVE~ 143 (400)
.|+..+....-...++.. ..++. .++ ....||+||+. |... +.+..+...+.. +.++. +|+.+.++-+
T Consensus 271 ~Ar~Na~~~gl~~~I~~~--~~D~~-~l~-~~~~fD~Iv~NPPYG~r-l~~~~~l~~ly~~lg~~lk~~~g~~~~iit~ 344 (384)
T 3ldg_A 271 IARKNAREVGLEDVVKLK--QMRLQ-DFK-TNKINGVLISNPPYGER-LLDDKAVDILYNEMGETFAPLKTWSQFILTN 344 (384)
T ss_dssp HHHHHHHHTTCTTTEEEE--ECCGG-GCC-CCCCSCEEEECCCCTTT-TSCHHHHHHHHHHHHHHHTTCTTSEEEEEES
T ss_pred HHHHHHHHcCCCCceEEE--ECChH-HCC-ccCCcCEEEECCchhhc-cCCHHHHHHHHHHHHHHHhhCCCcEEEEEEC
Confidence 999988654211111110 11222 122 23489999997 4432 333333333333 33433 5888888855
|
| >3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=97.51 E-value=0.00034 Score=69.85 Aligned_cols=109 Identities=9% Similarity=0.067 Sum_probs=64.4
Q ss_pred CCCC-CeEEEEccchhHHHHHHHHHCCC------------------------------------CCcEEEEEeCCHHHHH
Q 015771 28 GFSP-AKVLDFGAGTGSAFWALREVWPR------------------------------------SLEKVNLVEPSQSMQR 70 (400)
Q Consensus 28 ~~~p-~~VLDvG~G~Gt~~~Al~~~~~~------------------------------------~~~~v~~vD~S~~ml~ 70 (400)
.|.+ ..|||.+||+|+.++.++....+ ...+++++|.|+.|++
T Consensus 198 ~~~~~~~vlDp~CGSGt~~ieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~GvDid~~al~ 277 (393)
T 3k0b_A 198 SWHPDRPFYDPVCGSGTIPIEAALIGQNIAPGFNREFVSETWDWMPKQVWADARQEAEDLANYDQPLNIIGGDIDARLIE 277 (393)
T ss_dssp CCCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEEEEESCHHHHH
T ss_pred CCCCCCeEEEcCCCCCHHHHHHHHHhcCcCCCccccchhhccccCCHHHHHHHHHHHHHhhcccCCceEEEEECCHHHHH
Confidence 4554 58999999999998766543211 1146999999999999
Q ss_pred HHHHhhcCCCC---CCceeechhhhHhhhhcccCCCcccEEeecccccC-CCCHHHHHHH---HHHHHhc-cCCeEEEEc
Q 015771 71 AGQSLMQGPKD---LPLIHSYNSIQALNKDISKSEREHDLVIASYVLGE-VPSLQDRITI---VRQLWDL-TRDVLVLVE 142 (400)
Q Consensus 71 ~a~~ll~~~~~---~~~~~~~~~~~~l~~~l~~~~~~~DLVias~~L~e-L~~~~~r~~~---i~~Lw~~-~gG~LVlVE 142 (400)
.|+..+....- +.+... ++.. ++ ...+||+||++--.++ +.+..+...+ +...++. +||.+.++-
T Consensus 278 ~Ar~Na~~~gl~~~I~~~~~-----D~~~-~~-~~~~fD~Iv~NPPYg~rl~~~~~l~~ly~~lg~~lk~~~g~~~~iit 350 (393)
T 3k0b_A 278 IAKQNAVEAGLGDLITFRQL-----QVAD-FQ-TEDEYGVVVANPPYGERLEDEEAVRQLYREMGIVYKRMPTWSVYVLT 350 (393)
T ss_dssp HHHHHHHHTTCTTCSEEEEC-----CGGG-CC-CCCCSCEEEECCCCCCSHHHHHHHHHHHHHHHHHHHTCTTCEEEEEE
T ss_pred HHHHHHHHcCCCCceEEEEC-----ChHh-CC-CCCCCCEEEECCCCccccCCchhHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 99998864321 222221 2221 22 2358999999833222 1111222222 3333333 588888875
Q ss_pred C
Q 015771 143 P 143 (400)
Q Consensus 143 ~ 143 (400)
.
T Consensus 351 ~ 351 (393)
T 3k0b_A 351 S 351 (393)
T ss_dssp C
T ss_pred C
Confidence 4
|
| >3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=97.47 E-value=7.1e-05 Score=75.09 Aligned_cols=44 Identities=23% Similarity=0.244 Sum_probs=38.3
Q ss_pred CCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcC
Q 015771 31 PAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQG 78 (400)
Q Consensus 31 p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~ 78 (400)
..+|||+|||+|..+.+++. ...+|++||.|+.|++.|+..++.
T Consensus 94 g~~VLDLgcG~G~~al~LA~----~g~~V~~VD~s~~~l~~Ar~N~~~ 137 (410)
T 3ll7_A 94 GTKVVDLTGGLGIDFIALMS----KASQGIYIERNDETAVAARHNIPL 137 (410)
T ss_dssp TCEEEESSCSSSHHHHHHHT----TCSEEEEEESCHHHHHHHHHHHHH
T ss_pred CCEEEEeCCCchHHHHHHHh----cCCEEEEEECCHHHHHHHHHhHHH
Confidence 57999999999999888774 346899999999999999998863
|
| >2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A* | Back alignment and structure |
|---|
Probab=97.47 E-value=0.00069 Score=64.83 Aligned_cols=93 Identities=13% Similarity=0.105 Sum_probs=52.3
Q ss_pred CCeEEEEcc------chhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCCCCc-eeechhhhHhhhhcccCCC
Q 015771 31 PAKVLDFGA------GTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPL-IHSYNSIQALNKDISKSER 103 (400)
Q Consensus 31 p~~VLDvG~------G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~~~~-~~~~~~~~~l~~~l~~~~~ 103 (400)
..+|||+|| |||+ ..++...+ ...+|+++|.|+. +. ++.+ +.. ++.. ++ ..+
T Consensus 64 g~~VLDLGcGsg~~~GpGs--~~~a~~~~-~~~~V~gvDis~~--------v~---~v~~~i~g-----D~~~-~~-~~~ 122 (290)
T 2xyq_A 64 NMRVIHFGAGSDKGVAPGT--AVLRQWLP-TGTLLVDSDLNDF--------VS---DADSTLIG-----DCAT-VH-TAN 122 (290)
T ss_dssp TCEEEEESCCCTTSBCHHH--HHHHHHSC-TTCEEEEEESSCC--------BC---SSSEEEES-----CGGG-CC-CSS
T ss_pred CCEEEEeCCCCCCCCCcHH--HHHHHHcC-CCCEEEEEECCCC--------CC---CCEEEEEC-----cccc-CC-ccC
Confidence 369999999 6677 32344554 2468999999987 11 3444 332 2321 22 236
Q ss_pred cccEEeeccccc--------CCCCHHHHHHHHHHHHh--ccCCeEEEEcCC
Q 015771 104 EHDLVIASYVLG--------EVPSLQDRITIVRQLWD--LTRDVLVLVEPG 144 (400)
Q Consensus 104 ~~DLVias~~L~--------eL~~~~~r~~~i~~Lw~--~~gG~LVlVE~G 144 (400)
+||+|++....+ ..........+++.+.+ ++||.|++....
T Consensus 123 ~fD~Vvsn~~~~~~g~~~~d~~~~~~l~~~~l~~a~r~LkpGG~~v~~~~~ 173 (290)
T 2xyq_A 123 KWDLIISDMYDPRTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAVKITE 173 (290)
T ss_dssp CEEEEEECCCCCC---CCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEEECS
T ss_pred cccEEEEcCCccccccccccccchHHHHHHHHHHHHHhcCCCcEEEEEEec
Confidence 799999853321 11111111234444443 289999986543
|
| >3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A* | Back alignment and structure |
|---|
Probab=97.43 E-value=0.00014 Score=69.37 Aligned_cols=99 Identities=16% Similarity=0.089 Sum_probs=59.6
Q ss_pred CCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCCCCceeechhhhHhhhhcccCCCcccEEee
Q 015771 31 PAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDISKSEREHDLVIA 110 (400)
Q Consensus 31 p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~~~~~~~~~~~~~l~~~l~~~~~~~DLVia 110 (400)
+.+|||+|||+|..++.++.. ...+|+++|.|+.+++.++..++...-...+... ..+.. .+. ..+.||.|++
T Consensus 126 g~~VlD~~aG~G~~~i~~a~~---g~~~V~avD~np~a~~~~~~N~~~N~v~~~v~~~--~~D~~-~~~-~~~~~D~Vi~ 198 (278)
T 3k6r_A 126 DELVVDMFAGIGHLSLPIAVY---GKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAY--NMDNR-DFP-GENIADRILM 198 (278)
T ss_dssp TCEEEETTCTTTTTTHHHHHH---TCCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEE--CSCTT-TCC-CCSCEEEEEE
T ss_pred CCEEEEecCcCcHHHHHHHHh---cCCeEEEEECCHHHHHHHHHHHHHcCCCCcEEEE--eCcHH-Hhc-cccCCCEEEE
Confidence 379999999999988776643 2358999999999999999887643211112110 01111 122 3468999987
Q ss_pred cccccCCCCHHHHHHHHHHHHhccCCeEEEE
Q 015771 111 SYVLGEVPSLQDRITIVRQLWDLTRDVLVLV 141 (400)
Q Consensus 111 s~~L~eL~~~~~r~~~i~~Lw~~~gG~LVlV 141 (400)
..- +...+-+...-+++ ++||.|.+-
T Consensus 199 ~~p----~~~~~~l~~a~~~l-k~gG~ih~~ 224 (278)
T 3k6r_A 199 GYV----VRTHEFIPKALSIA-KDGAIIHYH 224 (278)
T ss_dssp CCC----SSGGGGHHHHHHHE-EEEEEEEEE
T ss_pred CCC----CcHHHHHHHHHHHc-CCCCEEEEE
Confidence 542 22222222222343 368987654
|
| >2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38 | Back alignment and structure |
|---|
Probab=97.42 E-value=0.00058 Score=65.92 Aligned_cols=48 Identities=15% Similarity=0.118 Sum_probs=40.9
Q ss_pred CCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCC
Q 015771 31 PAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGP 79 (400)
Q Consensus 31 p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~ 79 (400)
..+|||+|||||..+..+++..+ ...+|+++|.|+.+++.++..++..
T Consensus 103 g~~VLDlcaG~G~kt~~la~~~~-~~g~V~a~D~~~~~l~~~~~n~~r~ 150 (309)
T 2b9e_A 103 GSHVIDACAAPGNKTSHLAALLK-NQGKIFAFDLDAKRLASMATLLARA 150 (309)
T ss_dssp TCEEEESSCTTCHHHHHHHHHHT-TCSEEEEEESCHHHHHHHHHHHHHT
T ss_pred CCEEEEeCCChhHHHHHHHHHhC-CCCEEEEEeCCHHHHHHHHHHHHHc
Confidence 36999999999999888887764 3468999999999999999988754
|
| >3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile} | Back alignment and structure |
|---|
Probab=97.41 E-value=0.00036 Score=69.46 Aligned_cols=113 Identities=12% Similarity=0.113 Sum_probs=64.9
Q ss_pred CCCCC-CeEEEEccchhHHHHHHHHH----------------CCC--------------------CCcEEEEEeCCHHHH
Q 015771 27 PGFSP-AKVLDFGAGTGSAFWALREV----------------WPR--------------------SLEKVNLVEPSQSMQ 69 (400)
Q Consensus 27 p~~~p-~~VLDvG~G~Gt~~~Al~~~----------------~~~--------------------~~~~v~~vD~S~~ml 69 (400)
..|.+ .+|||.|||+|+.++.++.. |+. ...+|+++|.|+.|+
T Consensus 191 ~~~~~~~~vlDp~CGSGt~lieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~GvDid~~ai 270 (385)
T 3ldu_A 191 TPWKAGRVLVDPMCGSGTILIEAAMIGINMAPGLNREFISEKWRTLDKKIWWDVRKDAFNKIDNESKFKIYGYDIDEESI 270 (385)
T ss_dssp SCCCTTSCEEETTCTTCHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHSCCSCCCCEEEEESCHHHH
T ss_pred hCCCCCCeEEEcCCCCCHHHHHHHHHHhhhCCCcccccchhhcccCCHHHHHHHHHHHHHHhhccCCceEEEEECCHHHH
Confidence 34544 68999999999998876543 111 114699999999999
Q ss_pred HHHHHhhcCCCCCCceeechhhhHhhhhcccCCCcccEEeecccccCC-CCHHHHHHH---HHHHHhc-cCCeEEEEcC
Q 015771 70 RAGQSLMQGPKDLPLIHSYNSIQALNKDISKSEREHDLVIASYVLGEV-PSLQDRITI---VRQLWDL-TRDVLVLVEP 143 (400)
Q Consensus 70 ~~a~~ll~~~~~~~~~~~~~~~~~l~~~l~~~~~~~DLVias~~L~eL-~~~~~r~~~---i~~Lw~~-~gG~LVlVE~ 143 (400)
+.|+..+....-...++. ...++.. ++ ...+||+||+.--..+- .+..+...+ +...++. +|+.+.++-.
T Consensus 271 ~~Ar~Na~~~gl~~~i~~--~~~D~~~-l~-~~~~~D~Iv~NPPyg~rl~~~~~l~~ly~~lg~~lk~~~g~~~~iit~ 345 (385)
T 3ldu_A 271 DIARENAEIAGVDEYIEF--NVGDATQ-FK-SEDEFGFIITNPPYGERLEDKDSVKQLYKELGYAFRKLKNWSYYLITS 345 (385)
T ss_dssp HHHHHHHHHHTCGGGEEE--EECCGGG-CC-CSCBSCEEEECCCCCCSHHHHHHHHHHHHHHHHHHHTSBSCEEEEEES
T ss_pred HHHHHHHHHcCCCCceEE--EECChhh-cC-cCCCCcEEEECCCCcCccCCHHHHHHHHHHHHHHHhhCCCCEEEEEEC
Confidence 999998764321111111 0112221 22 23589999995443322 111222222 3333333 5888888754
|
| >2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=97.41 E-value=0.00011 Score=69.24 Aligned_cols=80 Identities=18% Similarity=0.113 Sum_probs=49.4
Q ss_pred CCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCH-------HHHHHHHHhhcCC--CC-CCceeechhhhHhhhhccc
Q 015771 31 PAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQ-------SMQRAGQSLMQGP--KD-LPLIHSYNSIQALNKDISK 100 (400)
Q Consensus 31 p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~-------~ml~~a~~ll~~~--~~-~~~~~~~~~~~~l~~~l~~ 100 (400)
+.+|||+|||+|..++.++.. ..+|+++|.|+ .|++.|+..++.. .+ +.++... ...+...++.
T Consensus 84 ~~~VLDlgcG~G~~a~~lA~~----g~~V~~vD~s~~~~~ll~~~l~~a~~n~~~~~~~~ri~~~~~d--~~~~l~~~~~ 157 (258)
T 2r6z_A 84 HPTVWDATAGLGRDSFVLASL----GLTVTAFEQHPAVACLLSDGIRRALLNPETQDTAARINLHFGN--AAEQMPALVK 157 (258)
T ss_dssp CCCEEETTCTTCHHHHHHHHT----TCCEEEEECCHHHHHHHHHHHHHHHHSHHHHHHHTTEEEEESC--HHHHHHHHHH
T ss_pred cCeEEEeeCccCHHHHHHHHh----CCEEEEEECChhhhHHHHHHHHHHHhHHHhhCCccCeEEEECC--HHHHHHhhhc
Confidence 369999999999998887753 35799999999 8888887655321 11 2233221 1111111110
Q ss_pred CCCcccEEeecccccC
Q 015771 101 SEREHDLVIASYVLGE 116 (400)
Q Consensus 101 ~~~~~DLVias~~L~e 116 (400)
..++||+|++.-.+.+
T Consensus 158 ~~~~fD~V~~dP~~~~ 173 (258)
T 2r6z_A 158 TQGKPDIVYLDPMYPE 173 (258)
T ss_dssp HHCCCSEEEECCCC--
T ss_pred cCCCccEEEECCCCCC
Confidence 0157999999765544
|
| >1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A | Back alignment and structure |
|---|
Probab=97.39 E-value=0.0001 Score=69.12 Aligned_cols=45 Identities=11% Similarity=0.076 Sum_probs=35.2
Q ss_pred CCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcC
Q 015771 30 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQG 78 (400)
Q Consensus 30 ~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~ 78 (400)
...+|||+|||+|..+. +.. .+ ..+|++||.|+.|++.+++.+..
T Consensus 21 ~~~~VLEIG~G~G~lt~-l~~-~~--~~~v~avEid~~~~~~a~~~~~~ 65 (252)
T 1qyr_A 21 KGQAMVEIGPGLAALTE-PVG-ER--LDQLTVIELDRDLAARLQTHPFL 65 (252)
T ss_dssp TTCCEEEECCTTTTTHH-HHH-TT--CSCEEEECCCHHHHHHHHTCTTT
T ss_pred CcCEEEEECCCCcHHHH-hhh-CC--CCeEEEEECCHHHHHHHHHHhcc
Confidence 34689999999999888 543 11 12399999999999999987654
|
| >2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B* | Back alignment and structure |
|---|
Probab=97.37 E-value=0.00079 Score=69.96 Aligned_cols=125 Identities=12% Similarity=0.092 Sum_probs=73.0
Q ss_pred CCeEEEEccchhHHHHHHHHHCCCC----------------CcEEEEEeCCHHHHHHHHHhhcC--CCC-----CCceee
Q 015771 31 PAKVLDFGAGTGSAFWALREVWPRS----------------LEKVNLVEPSQSMQRAGQSLMQG--PKD-----LPLIHS 87 (400)
Q Consensus 31 p~~VLDvG~G~Gt~~~Al~~~~~~~----------------~~~v~~vD~S~~ml~~a~~ll~~--~~~-----~~~~~~ 87 (400)
..+|||.+||+|..+.++.+.+... ...++++|.++.|.++|+..+.- ..+ ..+...
T Consensus 170 ~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~~~~i~GiEid~~~~~lA~~nl~l~gi~~~~~~~~~I~~g 249 (541)
T 2ar0_A 170 REVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDHGGAIRLG 249 (541)
T ss_dssp TCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHHTTTCCCBGGGTBSEEES
T ss_pred CCeEecCCcccchHHHHHHHHHHHhhcccccCCHHHHhhhhcceEEEEcCCHHHHHHHHHHHHHhCCCccccccCCeEeC
Confidence 4699999999999988877654211 13799999999999999876532 111 111211
Q ss_pred chhhhHhhhhcccCCCcccEEeecccccCCCC-----------HHHHHHHHHHHHhc--cCCeEEEEcCCCC--CchHHH
Q 015771 88 YNSIQALNKDISKSEREHDLVIASYVLGEVPS-----------LQDRITIVRQLWDL--TRDVLVLVEPGTP--QGSSII 152 (400)
Q Consensus 88 ~~~~~~l~~~l~~~~~~~DLVias~~L~eL~~-----------~~~r~~~i~~Lw~~--~gG~LVlVE~Gtp--~Gf~~I 152 (400)
. . +... .....+||+|+++--++.... ...-..++..+++. +||.+++|-|... .|. .-
T Consensus 250 D-t---L~~~-~~~~~~fD~Vv~NPPf~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~gGr~a~V~p~~~L~~~~-~~ 323 (541)
T 2ar0_A 250 N-T---LGSD-GENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHPGGRAAVVVPDNVLFEGG-KG 323 (541)
T ss_dssp C-T---TSHH-HHTSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHEEEEEEEEEEEEHHHHHCCT-HH
T ss_pred C-C---cccc-cccccCCeEEEECCCcccccchhhHhhcCCCCCchHHHHHHHHHHHhCCCCEEEEEecCcceecCc-HH
Confidence 1 1 1110 112357999998633322111 11123455555543 7999999965321 111 22
Q ss_pred HHHHHHHHH
Q 015771 153 SQMRSHILW 161 (400)
Q Consensus 153 ~~aR~~lL~ 161 (400)
..+|+.|++
T Consensus 324 ~~iR~~L~~ 332 (541)
T 2ar0_A 324 TDIRRDLMD 332 (541)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhh
Confidence 467999874
|
| >2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A* | Back alignment and structure |
|---|
Probab=97.34 E-value=0.00027 Score=70.21 Aligned_cols=47 Identities=23% Similarity=0.076 Sum_probs=40.0
Q ss_pred CCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcC
Q 015771 30 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQG 78 (400)
Q Consensus 30 ~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~ 78 (400)
.+.+|||+|||+|..++.++...+ ..+|+++|.|+.+++.+++.++.
T Consensus 47 ~~~~VLDl~aGtG~~~l~~a~~~~--~~~V~avDi~~~av~~a~~N~~~ 93 (378)
T 2dul_A 47 NPKIVLDALSATGIRGIRFALETP--AEEVWLNDISEDAYELMKRNVML 93 (378)
T ss_dssp CCSEEEESSCTTSHHHHHHHHHSS--CSEEEEEESCHHHHHHHHHHHHH
T ss_pred CCCEEEECCCchhHHHHHHHHhCC--CCeEEEEECCHHHHHHHHHHHHH
Confidence 457999999999999988887665 24799999999999999988754
|
| >4gqb_A Protein arginine N-methyltransferase 5; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} PDB: 4g56_A* | Back alignment and structure |
|---|
Probab=97.22 E-value=0.00035 Score=73.73 Aligned_cols=100 Identities=14% Similarity=0.151 Sum_probs=56.1
Q ss_pred CCCCCeEEEEccchhHHHHH---HHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCC--C-CCceeechhhhHhhhhcccC
Q 015771 28 GFSPAKVLDFGAGTGSAFWA---LREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK--D-LPLIHSYNSIQALNKDISKS 101 (400)
Q Consensus 28 ~~~p~~VLDvG~G~Gt~~~A---l~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~--~-~~~~~~~~~~~~l~~~l~~~ 101 (400)
.++...|||+|||+|.++.+ +.+.-. ...+|++||.|+ |...++++..... + +.+++. ++. .+. .
T Consensus 355 ~~~~~vVldVGaGrGpLv~~al~A~a~~~-~~vkVyAVEknp-~A~~a~~~v~~N~~~dkVtVI~g-----d~e-ev~-L 425 (637)
T 4gqb_A 355 DTNVQVLMVLGAGRGPLVNASLRAAKQAD-RRIKLYAVEKNP-NAVVTLENWQFEEWGSQVTVVSS-----DMR-EWV-A 425 (637)
T ss_dssp TTCEEEEEEESCTTSHHHHHHHHHHHHTT-CEEEEEEEESCH-HHHHHHHHHHHHTTGGGEEEEES-----CTT-TCC-C
T ss_pred cCCCcEEEEECCCCcHHHHHHHHHHHhcC-CCcEEEEEECCH-HHHHHHHHHHhccCCCeEEEEeC-----cce-ecc-C
Confidence 45567899999999987433 222221 234799999997 5556666664321 1 222222 122 121 2
Q ss_pred CCcccEEee----cccccCCCCHHHHHHHHHHHHhccCCeEE
Q 015771 102 EREHDLVIA----SYVLGEVPSLQDRITIVRQLWDLTRDVLV 139 (400)
Q Consensus 102 ~~~~DLVia----s~~L~eL~~~~~r~~~i~~Lw~~~gG~LV 139 (400)
.++.|+||+ ++.++|.. . +-+...++++ +|||.++
T Consensus 426 PEKVDIIVSEwMG~fLl~E~m-l-evL~Ardr~L-KPgGimi 464 (637)
T 4gqb_A 426 PEKADIIVSELLGSFADNELS-P-ECLDGAQHFL-KDDGVSI 464 (637)
T ss_dssp SSCEEEEECCCCBTTBGGGCH-H-HHHHHHGGGE-EEEEEEE
T ss_pred CcccCEEEEEcCcccccccCC-H-HHHHHHHHhc-CCCcEEc
Confidence 468999987 45566652 2 2233333333 3677654
|
| >3b5i_A S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase-like protein; sabath family, indole-3-acetic acid, S-AD methionine; HET: SAH; 2.75A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.17 E-value=0.0016 Score=64.51 Aligned_cols=84 Identities=11% Similarity=0.071 Sum_probs=48.0
Q ss_pred CCeEEEEccchhHHHHHH--------HHHC-----CCCCcEEEEEeCCHHHH-HHHHHhhcCCCC------------CCc
Q 015771 31 PAKVLDFGAGTGSAFWAL--------REVW-----PRSLEKVNLVEPSQSMQ-RAGQSLMQGPKD------------LPL 84 (400)
Q Consensus 31 p~~VLDvG~G~Gt~~~Al--------~~~~-----~~~~~~v~~vD~S~~ml-~~a~~ll~~~~~------------~~~ 84 (400)
+.+|+|+|||+|..+..+ .+.+ +.....|..-|.-.... .+.+.+-..... -+.
T Consensus 53 ~~~IaDlGCssG~Nt~~~v~~ii~~i~~~~~~~~~~~pe~~v~~nDLp~NDFn~lF~~L~~~~~~~~~~~~~~~~~~~~~ 132 (374)
T 3b5i_A 53 PFTAVDLGCSSGANTVHIIDFIVKHISKRFDAAGIDPPEFTAFFSDLPSNDFNTLFQLLPPLVSNTCMEECLAADGNRSY 132 (374)
T ss_dssp CEEEEEETCCSSHHHHHHHHHHHHHHHHHHHHTTCCCCCEEEEEEECTTSCHHHHHHHSCCBCCCC--CCC---CCCBCS
T ss_pred ceEEEecCCCCChhHHHHHHHHHHHHHHHHhhcCCCCCceeEEecCCCccchHHHHhhhhhhhhhcchhhhccccCCCce
Confidence 478999999999776543 2222 11246788888766554 344443321100 011
Q ss_pred eeechhhhHhhhhc---ccCCCcccEEeecccccCCCC
Q 015771 85 IHSYNSIQALNKDI---SKSEREHDLVIASYVLGEVPS 119 (400)
Q Consensus 85 ~~~~~~~~~l~~~l---~~~~~~~DLVias~~L~eL~~ 119 (400)
... -+..++ ..+.+++|+|+++++||+|..
T Consensus 133 f~~-----gvpgSFy~rlfP~~S~d~v~Ss~aLHWls~ 165 (374)
T 3b5i_A 133 FVA-----GVPGSFYRRLFPARTIDFFHSAFSLHWLSQ 165 (374)
T ss_dssp EEE-----EEESCTTSCCSCTTCEEEEEEESCTTBCSS
T ss_pred EEE-----ecChhhhcccCCCcceEEEEecceeeeecc
Confidence 100 011111 135789999999999999973
|
| >1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=97.15 E-value=3.7e-05 Score=71.34 Aligned_cols=56 Identities=16% Similarity=0.236 Sum_probs=42.0
Q ss_pred HHHHHHHHCCCCCCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhc
Q 015771 18 VTESFARRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQ 77 (400)
Q Consensus 18 vL~el~~rlp~~~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~ 77 (400)
++..+.+.+..-...+|||+|||+|..+..+++.. .+++++|.|+.|++.++..+.
T Consensus 17 ~~~~i~~~~~~~~~~~VLDiG~G~G~~~~~l~~~~----~~v~~id~~~~~~~~a~~~~~ 72 (245)
T 1yub_A 17 VLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKIS----KQVTSIELDSHLFNLSSEKLK 72 (245)
T ss_dssp THHHHHHHCCCCSSEEEEECSCCCSSCSHHHHHHS----SEEEESSSSCSSSSSSSCTTT
T ss_pred HHHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHhC----CeEEEEECCHHHHHHHHHHhc
Confidence 34445555443345699999999999888877642 589999999999988776654
|
| >3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A* | Back alignment and structure |
|---|
Probab=97.12 E-value=0.00067 Score=67.66 Aligned_cols=101 Identities=15% Similarity=0.011 Sum_probs=60.9
Q ss_pred CCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCCCCc--eeechhhhHhhhhcc-cCCCcccE
Q 015771 31 PAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPL--IHSYNSIQALNKDIS-KSEREHDL 107 (400)
Q Consensus 31 p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~~~~--~~~~~~~~~l~~~l~-~~~~~~DL 107 (400)
+.+|||++||+|...+.++...+ ...+|+++|.|+.+++.+++.++... +.. +... ..+....+. ...+.||+
T Consensus 53 g~~VLDlfaGtG~~sl~aa~~~~-ga~~V~avDi~~~av~~~~~N~~~Ng-l~~~~v~v~--~~Da~~~l~~~~~~~fD~ 128 (392)
T 3axs_A 53 PVKVADPLSASGIRAIRFLLETS-CVEKAYANDISSKAIEIMKENFKLNN-IPEDRYEIH--GMEANFFLRKEWGFGFDY 128 (392)
T ss_dssp CEEEEESSCTTSHHHHHHHHHCS-CEEEEEEECSCHHHHHHHHHHHHHTT-CCGGGEEEE--CSCHHHHHHSCCSSCEEE
T ss_pred CCEEEECCCcccHHHHHHHHhCC-CCCEEEEEECCHHHHHHHHHHHHHhC-CCCceEEEE--eCCHHHHHHHhhCCCCcE
Confidence 36999999999998887775442 23689999999999999999886432 211 1110 112221121 12457999
Q ss_pred EeecccccCCCCHHHHHHHHHHHHh--ccCCeEEEEc
Q 015771 108 VIASYVLGEVPSLQDRITIVRQLWD--LTRDVLVLVE 142 (400)
Q Consensus 108 Vias~~L~eL~~~~~r~~~i~~Lw~--~~gG~LVlVE 142 (400)
|++.- .. ... .++....+ ++||.|++.-
T Consensus 129 V~lDP-~g---~~~---~~l~~a~~~Lk~gGll~~t~ 158 (392)
T 3axs_A 129 VDLDP-FG---TPV---PFIESVALSMKRGGILSLTA 158 (392)
T ss_dssp EEECC-SS---CCH---HHHHHHHHHEEEEEEEEEEE
T ss_pred EEECC-Cc---CHH---HHHHHHHHHhCCCCEEEEEe
Confidence 98754 11 112 23444443 2688665543
|
| >3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif, gamma-N6M-adenosine methyltrans S-adenosyl-methionine binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus} | Back alignment and structure |
|---|
Probab=96.95 E-value=0.003 Score=68.06 Aligned_cols=42 Identities=10% Similarity=0.037 Sum_probs=35.9
Q ss_pred CCeEEEEccchhHHHHHHHHHCCC-CCcEEEEEeCCHHHHHHH
Q 015771 31 PAKVLDFGAGTGSAFWALREVWPR-SLEKVNLVEPSQSMQRAG 72 (400)
Q Consensus 31 p~~VLDvG~G~Gt~~~Al~~~~~~-~~~~v~~vD~S~~ml~~a 72 (400)
+.+|||.|||+|+.+.+++..++. ...+++++|+++.++++|
T Consensus 322 g~rVLDPaCGSG~FLIaaA~~l~ei~~~~IyGvEIDp~Al~LA 364 (878)
T 3s1s_A 322 DEVISDPAAGSGNLLATVSAGFNNVMPRQIWANDIETLFLELL 364 (878)
T ss_dssp TCEEEETTCTTSHHHHHHHHTSTTCCGGGEEEECSCGGGHHHH
T ss_pred CCEEEECCCCccHHHHHHHHHhcccCCCeEEEEECCHHHHHHH
Confidence 469999999999999998877642 135799999999999999
|
| >3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A* | Back alignment and structure |
|---|
Probab=96.91 E-value=0.0031 Score=67.55 Aligned_cols=114 Identities=13% Similarity=0.143 Sum_probs=64.0
Q ss_pred CCCC-CeEEEEccchhHHHHHHHHH-----------------CCC-----------------------CCcEEEEEeCCH
Q 015771 28 GFSP-AKVLDFGAGTGSAFWALREV-----------------WPR-----------------------SLEKVNLVEPSQ 66 (400)
Q Consensus 28 ~~~p-~~VLDvG~G~Gt~~~Al~~~-----------------~~~-----------------------~~~~v~~vD~S~ 66 (400)
.|.+ ..|||.+||+|+.++.++.. |+. ....++++|.++
T Consensus 187 ~~~~~~~llDP~CGSGt~lIeAa~~a~~~apG~~R~~f~fe~w~~~~~~~w~~~~~ea~~~~~~~~~~~~~~i~G~Did~ 266 (703)
T 3v97_A 187 GWQPGTPLLDPMCGSGTLLIEAAMLATDRAPGLHRGRWGFSGWAQHDEAIWQEVKAEAQTRARKGLAEYSSHFYGSDSDA 266 (703)
T ss_dssp TCCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCCTTTTBTTCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEESCH
T ss_pred CCCCCCeEEecCCCCcHHHHHHHHHHhhcCCCCCccccchhhcccCCHHHHHHHHHHHHHHhhhccccCCccEEEEECCH
Confidence 3544 58999999999998866543 110 014799999999
Q ss_pred HHHHHHHHhhcCCCCCCceeechhhhHhhhhc-ccCCCcccEEeecccccC-CCCHHH---HHHHHHHHHhc--cCCeEE
Q 015771 67 SMQRAGQSLMQGPKDLPLIHSYNSIQALNKDI-SKSEREHDLVIASYVLGE-VPSLQD---RITIVRQLWDL--TRDVLV 139 (400)
Q Consensus 67 ~ml~~a~~ll~~~~~~~~~~~~~~~~~l~~~l-~~~~~~~DLVias~~L~e-L~~~~~---r~~~i~~Lw~~--~gG~LV 139 (400)
.|++.|+..+...+-...++. ...+..... +...+.||+||++--.++ +.+..+ ....+..+++. +||.+.
T Consensus 267 ~av~~A~~N~~~agv~~~i~~--~~~D~~~~~~~~~~~~~d~Iv~NPPYG~Rlg~~~~l~~ly~~l~~~lk~~~~g~~~~ 344 (703)
T 3v97_A 267 RVIQRARTNARLAGIGELITF--EVKDVAQLTNPLPKGPYGTVLSNPPYGERLDSEPALIALHSLLGRIMKNQFGGWNLS 344 (703)
T ss_dssp HHHHHHHHHHHHTTCGGGEEE--EECCGGGCCCSCTTCCCCEEEECCCCCC---CCHHHHHHHHHHHHHHHHHCTTCEEE
T ss_pred HHHHHHHHHHHHcCCCCceEE--EECChhhCccccccCCCCEEEeCCCccccccchhHHHHHHHHHHHHHHhhCCCCeEE
Confidence 999999998865421111111 011222111 112237999999722222 112222 22333444442 788888
Q ss_pred EEcC
Q 015771 140 LVEP 143 (400)
Q Consensus 140 lVE~ 143 (400)
++-+
T Consensus 345 ilt~ 348 (703)
T 3v97_A 345 LFSA 348 (703)
T ss_dssp EEES
T ss_pred EEeC
Confidence 8743
|
| >3cvo_A Methyltransferase-like protein of unknown functio; rossman fold, structural genomics, joint center for structur genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=96.84 E-value=0.0039 Score=56.42 Aligned_cols=44 Identities=25% Similarity=0.428 Sum_probs=34.3
Q ss_pred CCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCC
Q 015771 31 PAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGP 79 (400)
Q Consensus 31 p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~ 79 (400)
+++||++||| .+++|.+. .+ ..+|+.||.++++.+.|+..++..
T Consensus 31 a~~VLEiGtG-ySTl~lA~--~~--~g~VvtvE~d~~~~~~ar~~l~~~ 74 (202)
T 3cvo_A 31 AEVILEYGSG-GSTVVAAE--LP--GKHVTSVESDRAWARMMKAWLAAN 74 (202)
T ss_dssp CSEEEEESCS-HHHHHHHT--ST--TCEEEEEESCHHHHHHHHHHHHHS
T ss_pred CCEEEEECch-HHHHHHHH--cC--CCEEEEEeCCHHHHHHHHHHHHHc
Confidence 5799999998 45555543 22 469999999999999999988654
|
| >3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold, beta-barrel, symmetric arginine dimethylase, SAM binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB: 3ua4_A | Back alignment and structure |
|---|
Probab=96.83 E-value=0.0015 Score=69.29 Aligned_cols=104 Identities=13% Similarity=0.131 Sum_probs=56.1
Q ss_pred CCeEEEEccchhHHHHH---HHHHCC--------CCCcEEEEEeCCHHHHHHHHHhhc-CCCC-CCceeechhhhHhhhh
Q 015771 31 PAKVLDFGAGTGSAFWA---LREVWP--------RSLEKVNLVEPSQSMQRAGQSLMQ-GPKD-LPLIHSYNSIQALNKD 97 (400)
Q Consensus 31 p~~VLDvG~G~Gt~~~A---l~~~~~--------~~~~~v~~vD~S~~ml~~a~~ll~-~~~~-~~~~~~~~~~~~l~~~ 97 (400)
...|||+|||+|.++.+ +.+..+ ....+|++||.|+.+....+.+.. ...+ +.+++.. ..++.-.
T Consensus 410 ~~VVldVGaGtGpLs~~al~A~~~a~~~~~~~~~~~~~kVyAVEknp~A~~~l~~~~~Ng~~d~VtVI~gd--~eev~lp 487 (745)
T 3ua3_A 410 TVVIYLLGGGRGPIGTKILKSEREYNNTFRQGQESLKVKLYIVEKNPNAIVTLKYMNVRTWKRRVTIIESD--MRSLPGI 487 (745)
T ss_dssp EEEEEEESCTTCHHHHHHHHHHHHHHHHHSTTSCCCEEEEEEEECCHHHHHHHHHHHHHTTTTCSEEEESC--GGGHHHH
T ss_pred CcEEEEECCCCCHHHHHHHHHHHHhCccccccccccccEEEEEeCChHHHHHHHHHHhcCCCCeEEEEeCc--hhhcccc
Confidence 35899999999988532 221110 023599999999876655444433 3333 3344332 1222110
Q ss_pred c-ccCCCcccEEeec----ccccCCCCHHHHHHHHHHHHhccCCeEE
Q 015771 98 I-SKSEREHDLVIAS----YVLGEVPSLQDRITIVRQLWDLTRDVLV 139 (400)
Q Consensus 98 l-~~~~~~~DLVias----~~L~eL~~~~~r~~~i~~Lw~~~gG~LV 139 (400)
. ....++.|+||+= +.++|+. .+-+..+++++ +++|.++
T Consensus 488 ~~~~~~ekVDIIVSElmGsfl~nEL~--pe~Ld~v~r~L-kp~Gi~i 531 (745)
T 3ua3_A 488 AKDRGFEQPDIIVSELLGSFGDNELS--PECLDGVTGFL-KPTTISI 531 (745)
T ss_dssp HHHTTCCCCSEEEECCCBTTBGGGSH--HHHHHTTGGGS-CTTCEEE
T ss_pred cccCCCCcccEEEEeccccccchhcc--HHHHHHHHHhC-CCCcEEE
Confidence 0 0114689999874 3356652 23444444444 3788665
|
| >2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A 2pkw_A | Back alignment and structure |
|---|
Probab=96.74 E-value=0.0014 Score=61.71 Aligned_cols=42 Identities=21% Similarity=0.242 Sum_probs=33.8
Q ss_pred CeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhc
Q 015771 32 AKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQ 77 (400)
Q Consensus 32 ~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~ 77 (400)
.+|||+|||+|..++.++.. ..+|++||.|+.+..+++..++
T Consensus 90 ~~VLDl~~G~G~dal~lA~~----g~~V~~vE~~~~~~~l~~~~l~ 131 (258)
T 2oyr_A 90 PDVVDATAGLGRDAFVLASV----GCRVRMLERNPVVAALLDDGLA 131 (258)
T ss_dssp CCEEETTCTTCHHHHHHHHH----TCCEEEEECCHHHHHHHHHHHH
T ss_pred CEEEEcCCcCCHHHHHHHHc----CCEEEEEECCHHHHHHHHHHHH
Confidence 69999999999998877764 2469999999998776665543
|
| >3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=96.70 E-value=0.0016 Score=67.73 Aligned_cols=126 Identities=12% Similarity=0.167 Sum_probs=72.3
Q ss_pred CCeEEEEccchhHHHHHHHHHCCC-------------CCcEEEEEeCCHHHHHHHHHhhc--CCC-CCCceeechhhhHh
Q 015771 31 PAKVLDFGAGTGSAFWALREVWPR-------------SLEKVNLVEPSQSMQRAGQSLMQ--GPK-DLPLIHSYNSIQAL 94 (400)
Q Consensus 31 p~~VLDvG~G~Gt~~~Al~~~~~~-------------~~~~v~~vD~S~~ml~~a~~ll~--~~~-~~~~~~~~~~~~~l 94 (400)
+.+|||.+||+|+++.++...+.. ....++++|.++.+..+|+..+. ... ++...... .+
T Consensus 245 ~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi~~~i~i~~gD----tL 320 (544)
T 3khk_A 245 KGRVYDPAMGSGGFFVSSDKFIEKHANVKHYNASEQKKQISVYGQESNPTTWKLAAMNMVIRGIDFNFGKKNAD----SF 320 (544)
T ss_dssp SEEEEESSCTTCHHHHHHHHHHHHHHHHHTSCHHHHGGGEEEEECCCCHHHHHHHHHHHHHTTCCCBCCSSSCC----TT
T ss_pred CCeEeCcccCcCcHHHHHHHHHHHhccccccchHHHhhhceEEEEeCCHHHHHHHHHHHHHhCCCcccceeccc----hh
Confidence 349999999999998877554321 03579999999999999987653 211 11101111 01
Q ss_pred hhhcccCCCcccEEeec--ccccC-----------------------CCCHH-HHHHHHHHHHhc--cCCeEEEEcCCC-
Q 015771 95 NKDISKSEREHDLVIAS--YVLGE-----------------------VPSLQ-DRITIVRQLWDL--TRDVLVLVEPGT- 145 (400)
Q Consensus 95 ~~~l~~~~~~~DLVias--~~L~e-----------------------L~~~~-~r~~~i~~Lw~~--~gG~LVlVE~Gt- 145 (400)
... .....+||+||++ |.... ++... .-..++..+++. +||.+++|-|..
T Consensus 321 ~~~-~~~~~~fD~Iv~NPPf~~~~~~~~~~~~d~r~~~g~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~gGr~aiVlP~g~ 399 (544)
T 3khk_A 321 LDD-QHPDLRADFVMTNPPFNMKDWWHEKLADDPRWTINTNGEKRILTPPTGNANFAWMLHMLYHLAPTGSMALLLANGS 399 (544)
T ss_dssp TSC-SCTTCCEEEEEECCCSSCCSCCCGGGTTCGGGEECCC--CEECCCCTTCTHHHHHHHHHHTEEEEEEEEEEEETHH
T ss_pred cCc-ccccccccEEEECCCcCCccccchhhhhhhhhhcCcccccccccCCCcchhHHHHHHHHHHhccCceEEEEecchh
Confidence 111 1234689999994 33211 21111 112456666654 799998886531
Q ss_pred C-CchHHHHHHHHHHHH
Q 015771 146 P-QGSSIISQMRSHILW 161 (400)
Q Consensus 146 p-~Gf~~I~~aR~~lL~ 161 (400)
. .+...-..+|+.|++
T Consensus 400 L~~~~~~~~~iRk~Lle 416 (544)
T 3khk_A 400 MSSNTNNEGEIRKTLVE 416 (544)
T ss_dssp HHCCGGGHHHHHHHHHH
T ss_pred hhcCcchHHHHHHHHHh
Confidence 1 110123567999884
|
| >2qy6_A UPF0209 protein YFCK; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=96.59 E-value=0.0016 Score=61.23 Aligned_cols=49 Identities=18% Similarity=0.098 Sum_probs=34.7
Q ss_pred CCCeEEEEccchhHHHHHHHHHC------CCC----CcEEEEEeCCH---HHHH-----------HHHHhhcC
Q 015771 30 SPAKVLDFGAGTGSAFWALREVW------PRS----LEKVNLVEPSQ---SMQR-----------AGQSLMQG 78 (400)
Q Consensus 30 ~p~~VLDvG~G~Gt~~~Al~~~~------~~~----~~~v~~vD~S~---~ml~-----------~a~~ll~~ 78 (400)
++.+|||+|+|+|..+.++.+.| ... ..+|+++|..+ +++. .++.+++.
T Consensus 60 ~~~~ILEiGfGtG~n~l~~~~~~~~~~~~~p~~~~~~l~~isiE~~p~~~~~l~~a~~~~p~l~~~a~~l~~~ 132 (257)
T 2qy6_A 60 PLFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQ 132 (257)
T ss_dssp SEEEEEESCCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHT
T ss_pred CCCEEEEECCChHHHHHHHHHHHHhhhhhCCCCCcceeEEEEEECCcCCHHHHHHHHhcChhHHHHHHHHHHh
Confidence 34699999999998887766655 222 35899999876 4444 56666654
|
| >2efj_A 3,7-dimethylxanthine methyltransferase; SAM-dependant methyltransferase, SAH, theobromine; HET: SAH 37T; 2.00A {Coffea canephora} PDB: 2eg5_A* | Back alignment and structure |
|---|
Probab=96.56 E-value=0.036 Score=54.97 Aligned_cols=86 Identities=16% Similarity=0.064 Sum_probs=46.1
Q ss_pred CCeEEEEccchhHHHHHHHHH--------CC-------CCCcEEEEEeCC-----------HHHHHHHHHhhcCCCCCCc
Q 015771 31 PAKVLDFGAGTGSAFWALREV--------WP-------RSLEKVNLVEPS-----------QSMQRAGQSLMQGPKDLPL 84 (400)
Q Consensus 31 p~~VLDvG~G~Gt~~~Al~~~--------~~-------~~~~~v~~vD~S-----------~~ml~~a~~ll~~~~~~~~ 84 (400)
+.+|+|+|||+|..++.+... +. .....|+.-|.- +.+.+..+.......+.-+
T Consensus 53 ~~~IaDlGCssG~NT~~~v~~ii~~i~~~~~~~~~~~~~pe~~v~~nDLp~NDFN~lF~~L~~~~~~~~~~~g~~~~~~f 132 (384)
T 2efj_A 53 CFKVGDLGCASGPNTFSTVRDIVQSIDKVGQEKKNELERPTIQIFLNDLFQNDFNSVFKLLPSFYRNLEKENGRKIGSCL 132 (384)
T ss_dssp EEEEEEETCCSSHHHHHHHHHHHHHHTCC----------CEEEEEEECCTTSCHHHHHHHHHHHHHHHHHHTCCCTTSEE
T ss_pred ceEEEecCCCCCchHHHHHHHHHHHHHHHhhhcccCCCCCceEEEecCCCccchHHHHhhhhhhHhhhhhhccCCCCceE
Confidence 578999999999876654332 11 123467777866 4444432221111001111
Q ss_pred eeechhhhHhhhhcccCCCcccEEeecccccCCCC
Q 015771 85 IHSYNSIQALNKDISKSEREHDLVIASYVLGEVPS 119 (400)
Q Consensus 85 ~~~~~~~~~l~~~l~~~~~~~DLVias~~L~eL~~ 119 (400)
+.... -..+.+ ..+.+++|+|.++++||++..
T Consensus 133 ~~gvp-gSFy~r--lfp~~S~d~v~Ss~aLHWls~ 164 (384)
T 2efj_A 133 IGAMP-GSFYSR--LFPEESMHFLHSCYCLHWLSQ 164 (384)
T ss_dssp EEECC-SCTTSC--CSCTTCEEEEEEESCTTBCSS
T ss_pred EEecc-hhhhhc--cCCCCceEEEEecceeeecCC
Confidence 11100 000111 135789999999999999864
|
| >2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A | Back alignment and structure |
|---|
Probab=96.54 E-value=0.0029 Score=60.34 Aligned_cols=45 Identities=22% Similarity=0.088 Sum_probs=38.3
Q ss_pred CCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcC
Q 015771 30 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQG 78 (400)
Q Consensus 30 ~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~ 78 (400)
....|||++||+|+.+.++.. ...+++++|.++.|++.|+..+..
T Consensus 235 ~~~~vlD~f~GsGt~~~~a~~----~g~~~~g~e~~~~~~~~a~~r~~~ 279 (297)
T 2zig_A 235 VGDVVLDPFAGTGTTLIAAAR----WGRRALGVELVPRYAQLAKERFAR 279 (297)
T ss_dssp TTCEEEETTCTTTHHHHHHHH----TTCEEEEEESCHHHHHHHHHHHHH
T ss_pred CCCEEEECCCCCCHHHHHHHH----cCCeEEEEeCCHHHHHHHHHHHHH
Confidence 346999999999999998774 235899999999999999988754
|
| >3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli} | Back alignment and structure |
|---|
Probab=96.40 E-value=0.006 Score=58.34 Aligned_cols=105 Identities=13% Similarity=0.181 Sum_probs=64.6
Q ss_pred CCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCC----CCCCceeechhhhHhhhhcccCCCcc
Q 015771 30 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGP----KDLPLIHSYNSIQALNKDISKSEREH 105 (400)
Q Consensus 30 ~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~----~~~~~~~~~~~~~~l~~~l~~~~~~~ 105 (400)
+|++||=+|.|.|..+..+.... ...++++||+++.+++++++-+... -+-|.++.. .+|....+....++|
T Consensus 83 ~pk~VLIiGgGdG~~~revlk~~--~v~~v~~VEID~~Vv~~a~~~lp~~~~~~~~dpRv~v~--~~Dg~~~l~~~~~~y 158 (294)
T 3o4f_A 83 HAKHVLIIGGGDGAMLREVTRHK--NVESITMVEIDAGVVSFCRQYLPNHNAGSYDDPRFKLV--IDDGVNFVNQTSQTF 158 (294)
T ss_dssp CCCEEEEESCTTSHHHHHHHTCT--TCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEE--ESCTTTTTSCSSCCE
T ss_pred CCCeEEEECCCchHHHHHHHHcC--CcceEEEEcCCHHHHHHHHhcCccccccccCCCcEEEE--echHHHHHhhccccC
Confidence 57899999999999998877543 3579999999999999999876421 112322211 112222233345789
Q ss_pred cEEeecccc-----cCCCCHHHHHHHHHHHHhccCCeEEE
Q 015771 106 DLVIASYVL-----GEVPSLQDRITIVRQLWDLTRDVLVL 140 (400)
Q Consensus 106 DLVias~~L-----~eL~~~~~r~~~i~~Lw~~~gG~LVl 140 (400)
|+||+--.= ..|-+ .+-.+.+++.++ +||++|.
T Consensus 159 DvIi~D~~dp~~~~~~L~t-~eFy~~~~~~L~-p~Gv~v~ 196 (294)
T 3o4f_A 159 DVIISDCTDPIGPGESLFT-SAFYEGCKRCLN-PGGIFVA 196 (294)
T ss_dssp EEEEESCCCCCCTTCCSSC-CHHHHHHHHTEE-EEEEEEE
T ss_pred CEEEEeCCCcCCCchhhcC-HHHHHHHHHHhC-CCCEEEE
Confidence 999964321 11211 122334444443 7898885
|
| >1m6e_X S-adenosyl-L-methionnine:salicylic acid carboxyl methyltransferase; rossmann fold, protein-small molecule complex; HET: SAH SAL; 3.00A {Clarkia breweri} SCOP: c.66.1.35 | Back alignment and structure |
|---|
Probab=96.32 E-value=0.013 Score=57.60 Aligned_cols=85 Identities=12% Similarity=0.050 Sum_probs=50.9
Q ss_pred CCCeEEEEccchhHHHHH--------HHHHC------CCCCcEEEEEeCCHHHHHHHHHhhcCCC--CCCceeechhhhH
Q 015771 30 SPAKVLDFGAGTGSAFWA--------LREVW------PRSLEKVNLVEPSQSMQRAGQSLMQGPK--DLPLIHSYNSIQA 93 (400)
Q Consensus 30 ~p~~VLDvG~G~Gt~~~A--------l~~~~------~~~~~~v~~vD~S~~ml~~a~~ll~~~~--~~~~~~~~~~~~~ 93 (400)
++.+|+|+||++|..++. +.+.+ +.....|+..|...++.+..-+.+.... .-++... -
T Consensus 51 ~~~~IaDlGCs~G~Nt~~~v~~ii~~i~~~~~~~~~~~~pe~~v~~nDLp~NDFntlF~~L~~~~~~~~~~f~~-----g 125 (359)
T 1m6e_X 51 TRLAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIENDVDGVCFIN-----G 125 (359)
T ss_dssp SEECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTSCSCTTCEEEE-----E
T ss_pred CceEEEecCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCCceEEEecCCCchHHHHHHHhcchhcccCCCEEEE-----e
Confidence 346899999999965542 22221 1234678899988887765555554311 0111100 0
Q ss_pred hhhhc---ccCCCcccEEeecccccCCCC
Q 015771 94 LNKDI---SKSEREHDLVIASYVLGEVPS 119 (400)
Q Consensus 94 l~~~l---~~~~~~~DLVias~~L~eL~~ 119 (400)
+..++ ..+.+++|+|+++++||++..
T Consensus 126 vpgSFy~rlfp~~S~d~v~Ss~aLHWls~ 154 (359)
T 1m6e_X 126 VPGSFYGRLFPRNTLHFIHSSYSLMWLSQ 154 (359)
T ss_dssp EESCSSSCCSCTTCBSCEEEESCTTBCSS
T ss_pred cchhhhhccCCCCceEEEEehhhhhhccc
Confidence 11111 135779999999999999864
|
| >3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP binding, binding, capsid protein; HET: GTA SAH; 1.45A {Yellow fever virus} SCOP: c.66.1.0 PDB: 3evb_A* 3evc_A* 3evd_A* 3eve_A* 3eva_A* | Back alignment and structure |
|---|
Probab=96.24 E-value=0.0044 Score=58.56 Aligned_cols=110 Identities=14% Similarity=0.098 Sum_probs=57.6
Q ss_pred HHHHHHHCCCCCC-CeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCC-CCCCceeechhhhHhhh
Q 015771 19 TESFARRLPGFSP-AKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGP-KDLPLIHSYNSIQALNK 96 (400)
Q Consensus 19 L~el~~rlp~~~p-~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~-~~~~~~~~~~~~~~l~~ 96 (400)
|.|+.++ ..++| .+|||+|||||..+..+++.. ....++++|.+..+.. ..+... .+...+... .+.+
T Consensus 63 L~ei~ek-~~l~~~~~VLDLGaAPGGWSQvAa~~~--~~~~v~g~dVGvDl~~---~pi~~~~~g~~ii~~~---~~~d- 132 (277)
T 3evf_A 63 LRWFHER-GYVKLEGRVIDLGCGRGGWCYYAAAQK--EVSGVKGFTLGRDGHE---KPMNVQSLGWNIITFK---DKTD- 132 (277)
T ss_dssp HHHHHHT-TSSCCCEEEEEETCTTCHHHHHHHTST--TEEEEEEECCCCTTCC---CCCCCCBTTGGGEEEE---CSCC-
T ss_pred HHHHHHh-CCCCCCCEEEEecCCCCHHHHHHHHhc--CCCcceeEEEeccCcc---cccccCcCCCCeEEEe---ccce-
Confidence 4555555 33444 589999999999887655432 2457888888754310 000000 000111100 0010
Q ss_pred hcccCCCcccEEeecccccCCCCHH---HH----HHHHHHHHhccC-CeEEE
Q 015771 97 DISKSEREHDLVIASYVLGEVPSLQ---DR----ITIVRQLWDLTR-DVLVL 140 (400)
Q Consensus 97 ~l~~~~~~~DLVias~~L~eL~~~~---~r----~~~i~~Lw~~~g-G~LVl 140 (400)
.......+||+|++..+.+ -.... .+ +.++.+.+ ++| |.+|+
T Consensus 133 v~~l~~~~~DlVlsD~apn-sG~~~~D~~rs~~LL~~a~~~L-kpG~G~FV~ 182 (277)
T 3evf_A 133 IHRLEPVKCDTLLCDIGES-SSSSVTEGERTVRVLDTVEKWL-ACGVDNFCV 182 (277)
T ss_dssp TTTSCCCCCSEEEECCCCC-CSCHHHHHHHHHHHHHHHHHHH-TTCCSEEEE
T ss_pred ehhcCCCCccEEEecCccC-cCchHHHHHHHHHHHHHHHHHh-CCCCCeEEE
Confidence 1122456899999988777 33211 12 12333444 378 98886
|
| >3lkd_A Type I restriction-modification system methyltransferase subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics, PSI-2; 2.25A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=96.19 E-value=0.012 Score=61.18 Aligned_cols=128 Identities=15% Similarity=0.102 Sum_probs=74.6
Q ss_pred CCCeEEEEccchhHHHHHHHHHCCC-CCcEEEEEeCCHHHHHHHHHhhc--CCC--CCCceeechhhhHhhhhcc-cCCC
Q 015771 30 SPAKVLDFGAGTGSAFWALREVWPR-SLEKVNLVEPSQSMQRAGQSLMQ--GPK--DLPLIHSYNSIQALNKDIS-KSER 103 (400)
Q Consensus 30 ~p~~VLDvG~G~Gt~~~Al~~~~~~-~~~~v~~vD~S~~ml~~a~~ll~--~~~--~~~~~~~~~~~~~l~~~l~-~~~~ 103 (400)
...+|||.+||+|+.+.++.+.+.. ....++++|.++.+..+|+..+. ... +..+.... .+....+ ....
T Consensus 221 ~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi~~~~~~I~~gD----tL~~d~p~~~~~ 296 (542)
T 3lkd_A 221 QGFTLYDATMGSGSLLLNAKRYSRQPQTVVYFGQELNTSTYNLARMNMILHGVPIENQFLHNAD----TLDEDWPTQEPT 296 (542)
T ss_dssp TTCEEEETTCTTSTTGGGHHHHCSCTTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEESC----TTTSCSCCSSCC
T ss_pred CCCEEeecccchhHHHHHHHHHHHhccCceEEEEECcHHHHHHHHHHHHHcCCCcCccceEecc----eecccccccccc
Confidence 3469999999999999888777642 24689999999999999987552 211 11111111 1111111 2346
Q ss_pred cccEEeec--ccccC-----------------CCCHH-HHHHHHHHHHh--c-cCCeEEEEcCCCCC-chHHHHHHHHHH
Q 015771 104 EHDLVIAS--YVLGE-----------------VPSLQ-DRITIVRQLWD--L-TRDVLVLVEPGTPQ-GSSIISQMRSHI 159 (400)
Q Consensus 104 ~~DLVias--~~L~e-----------------L~~~~-~r~~~i~~Lw~--~-~gG~LVlVE~Gtp~-Gf~~I~~aR~~l 159 (400)
+||+||++ |.... ++... .-..++..+++ + +||.+++|-|.... +...-..+|+.|
T Consensus 297 ~fD~IvaNPPf~~~~~~~~~~~~d~rf~~~G~~~~~s~~~~~Fl~~~l~~Lk~~gGr~a~VlP~g~Lf~~~~~~~iRk~L 376 (542)
T 3lkd_A 297 NFDGVLMNPPYSAKWSASSGFMDDPRFSPFGKLAPKSKADFAFLLHGYYHLKQDNGVMAIVLPHGVLFRGNAEGTIRKAL 376 (542)
T ss_dssp CBSEEEECCCTTCCCCCCGGGGGSTTTGGGSSCCCTTCCHHHHHHHHHHTBCTTTCEEEEEEETHHHHCCTHHHHHHHHH
T ss_pred cccEEEecCCcCCccccchhhhhhhhhhhhhhcCCCchhhHHHHHHHHHHhCCCceeEEEEecchHhhCCchhHHHHHHH
Confidence 89999985 22111 11100 01235555554 3 68999988664321 111245679998
Q ss_pred HH
Q 015771 160 LW 161 (400)
Q Consensus 160 L~ 161 (400)
++
T Consensus 377 le 378 (542)
T 3lkd_A 377 LE 378 (542)
T ss_dssp HH
T ss_pred Hh
Confidence 84
|
| >4auk_A Ribosomal RNA large subunit methyltransferase M; YGDE; HET: TLA PGE; 1.90A {Escherichia coli} PDB: 4atn_A* 4b17_A* | Back alignment and structure |
|---|
Probab=96.08 E-value=0.023 Score=56.03 Aligned_cols=111 Identities=15% Similarity=0.107 Sum_probs=68.4
Q ss_pred CCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCCCCceeechhhhHhhhhcccCCCcccEEee
Q 015771 31 PAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDISKSEREHDLVIA 110 (400)
Q Consensus 31 p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~~~~~~~~~~~~~l~~~l~~~~~~~DLVia 110 (400)
+.+|||+||+||..++.+.+ ....|++||..+ |- ..+.. ..++..+.. +.. .......++|+|+|
T Consensus 212 G~~vlDLGAaPGGWT~~l~~----rg~~V~aVD~~~-l~---~~l~~-~~~V~~~~~-----d~~-~~~~~~~~~D~vvs 276 (375)
T 4auk_A 212 GMWAVDLGACPGGWTYQLVK----RNMWVYSVDNGP-MA---QSLMD-TGQVTWLRE-----DGF-KFRPTRSNISWMVC 276 (375)
T ss_dssp TCEEEEETCTTCHHHHHHHH----TTCEEEEECSSC-CC---HHHHT-TTCEEEECS-----CTT-TCCCCSSCEEEEEE
T ss_pred CCEEEEeCcCCCHHHHHHHH----CCCEEEEEEhhh-cC---hhhcc-CCCeEEEeC-----ccc-cccCCCCCcCEEEE
Confidence 47999999999999998875 346899999863 21 22222 122222211 111 12223468999999
Q ss_pred cccccCCCCHHHHHHHHHHHHhc--cCCeEEEEcCCCCCchHHHHHHHHHHH
Q 015771 111 SYVLGEVPSLQDRITIVRQLWDL--TRDVLVLVEPGTPQGSSIISQMRSHIL 160 (400)
Q Consensus 111 s~~L~eL~~~~~r~~~i~~Lw~~--~gG~LVlVE~Gtp~Gf~~I~~aR~~lL 160 (400)
-.+.+ +.....++...... .++.++.+.......++.+....+.+-
T Consensus 277 Dm~~~----p~~~~~l~~~wl~~~~~~~aI~~lKL~mk~~~~~l~~~~~~i~ 324 (375)
T 4auk_A 277 DMVEK----PAKVAALMAQWLVNGWCRETIFNLKLPMKKRYEEVSHNLAYIQ 324 (375)
T ss_dssp CCSSC----HHHHHHHHHHHHHTTSCSEEEEEEECCSSSHHHHHHHHHHHHH
T ss_pred cCCCC----hHHhHHHHHHHHhccccceEEEEEEecccchHHHHHHHHHHHH
Confidence 76532 33334455444433 356778888877777888877777664
|
| >1wg8_A Predicted S-adenosylmethionine-dependent methyltransferase; S-adenosyl-methyltransferase, MRAW; HET: SAM; 2.00A {Thermus thermophilus} SCOP: a.60.13.1 c.66.1.23 | Back alignment and structure |
|---|
Probab=96.05 E-value=0.016 Score=55.04 Aligned_cols=84 Identities=11% Similarity=0.056 Sum_probs=53.8
Q ss_pred HHHHHHHCCCCCCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCCCCceeechhhhHhhhhc
Q 015771 19 TESFARRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDI 98 (400)
Q Consensus 19 L~el~~rlp~~~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~~~~~~~~~~~~~l~~~l 98 (400)
+.|+...+.--....+||.+||.|.-+.++++. ..+|+++|.++.+++.|+. +.. ..+.+++..+ .++...+
T Consensus 11 l~e~le~L~~~~gg~~VD~T~G~GGHS~~il~~----~g~VigiD~Dp~Ai~~A~~-L~~-~rv~lv~~~f--~~l~~~L 82 (285)
T 1wg8_A 11 YQEALDLLAVRPGGVYVDATLGGAGHARGILER----GGRVIGLDQDPEAVARAKG-LHL-PGLTVVQGNF--RHLKRHL 82 (285)
T ss_dssp HHHHHHHHTCCTTCEEEETTCTTSHHHHHHHHT----TCEEEEEESCHHHHHHHHH-TCC-TTEEEEESCG--GGHHHHH
T ss_pred HHHHHHhhCCCCCCEEEEeCCCCcHHHHHHHHC----CCEEEEEeCCHHHHHHHHh-hcc-CCEEEEECCc--chHHHHH
Confidence 344444432222368999999999999888864 3589999999999999999 755 3344444332 2222212
Q ss_pred c-cCCCcccEEee
Q 015771 99 S-KSEREHDLVIA 110 (400)
Q Consensus 99 ~-~~~~~~DLVia 110 (400)
. ....++|.|++
T Consensus 83 ~~~g~~~vDgIL~ 95 (285)
T 1wg8_A 83 AALGVERVDGILA 95 (285)
T ss_dssp HHTTCSCEEEEEE
T ss_pred HHcCCCCcCEEEe
Confidence 1 11246888875
|
| >3gcz_A Polyprotein; flavivirus, RNA capping, methyltransferase, viral enzyme STR ATP-binding, nucleotide-binding, RNA replication, structura genomics; HET: SAM; 1.70A {Yokose virus} | Back alignment and structure |
|---|
Probab=95.88 E-value=0.0059 Score=57.77 Aligned_cols=47 Identities=19% Similarity=0.181 Sum_probs=33.0
Q ss_pred HHHHHHHCCCCCC-CeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHH
Q 015771 19 TESFARRLPGFSP-AKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSM 68 (400)
Q Consensus 19 L~el~~rlp~~~p-~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~m 68 (400)
|.||.++. .++| .+|||+|||||..+-.+.... ....++++|.+..|
T Consensus 79 L~ei~eK~-~Lk~~~~VLDLGaAPGGWsQvAa~~~--gv~sV~GvdvG~d~ 126 (282)
T 3gcz_A 79 LRWMEERG-YVKPTGIVVDLGCGRGGWSYYAASLK--NVKKVMAFTLGVQG 126 (282)
T ss_dssp HHHHHHTT-SCCCCEEEEEETCTTCHHHHHHHTST--TEEEEEEECCCCTT
T ss_pred HHHHHHhc-CCCCCCEEEEeCCCCCHHHHHHHHhc--CCCeeeeEEeccCc
Confidence 45565554 4444 589999999999887665433 24578899988654
|
| >2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A* | Back alignment and structure |
|---|
Probab=95.64 E-value=0.0016 Score=78.80 Aligned_cols=105 Identities=12% Similarity=0.105 Sum_probs=51.3
Q ss_pred CeEEEEccchhHHHHHHHHHCCC---CCcEEEEEeCCHHHHHHHHHhhcCCCCCCceeechhhhHhhhhcccCCCcccEE
Q 015771 32 AKVLDFGAGTGSAFWALREVWPR---SLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDISKSEREHDLV 108 (400)
Q Consensus 32 ~~VLDvG~G~Gt~~~Al~~~~~~---~~~~v~~vD~S~~ml~~a~~ll~~~~~~~~~~~~~~~~~l~~~l~~~~~~~DLV 108 (400)
.+||++|+|+|..+..+.+.+.. ...+|+..|+|+.+.+.++..++.. ++. ... + +.....+.....||+|
T Consensus 1242 ~~ilEigagtg~~t~~il~~l~~~~~~~~~yt~td~s~~~~~~a~~~f~~~-di~--~~~--~-d~~~~~~~~~~~ydlv 1315 (2512)
T 2vz8_A 1242 MKVVEVLAGDGQLYSRIPALLNTQPVMDLDYTATDRNPQALEAAQAKLEQL-HVT--QGQ--W-DPANPAPGSLGKADLL 1315 (2512)
T ss_dssp EEEEEESCSSSCCTTTHHHHTTTSSSCEEEEEEECSSSSSTTTTTTTHHHH-TEE--EEC--C-CSSCCCC-----CCEE
T ss_pred ceEEEECCCccHHHHHHHHhhcccCcccceEEEecCChHHHHHHHHHhhhc-ccc--ccc--c-cccccccCCCCceeEE
Confidence 58999999999876665555532 2358999999987765555544321 000 000 0 0000001123569999
Q ss_pred eecccccCCCCHHHHHHHHHHHHhccCCeEEEEcC
Q 015771 109 IASYVLGEVPSLQDRITIVRQLWDLTRDVLVLVEP 143 (400)
Q Consensus 109 ias~~L~eL~~~~~r~~~i~~Lw~~~gG~LVlVE~ 143 (400)
|++++|+..++....+..+++|++ |||+|++.|.
T Consensus 1316 ia~~vl~~t~~~~~~l~~~~~lL~-p~G~l~~~e~ 1349 (2512)
T 2vz8_A 1316 VCNCALATLGDPAVAVGNMAATLK-EGGFLLLHTL 1349 (2512)
T ss_dssp EEECC---------------------CCEEEEEEC
T ss_pred EEcccccccccHHHHHHHHHHhcC-CCcEEEEEec
Confidence 999999977666555666777774 8999999986
|
| >2k4m_A TR8_protein, UPF0146 protein MTH_1000; alpha+beta, rossman fold, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str} | Back alignment and structure |
|---|
Probab=95.56 E-value=0.0074 Score=51.75 Aligned_cols=84 Identities=14% Similarity=0.110 Sum_probs=51.9
Q ss_pred CCeEEEEccchh-HHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCCCCceeechhhhHhhhhcccCCCcccEEe
Q 015771 31 PAKVLDFGAGTG-SAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDISKSEREHDLVI 109 (400)
Q Consensus 31 p~~VLDvG~G~G-t~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~~~~~~~~~~~~~l~~~l~~~~~~~DLVi 109 (400)
+.+|||+|||+| ..+..+++. ...+|+++|+|+..++ ++.. ++-......-..||||-
T Consensus 36 ~~rVlEVG~G~g~~vA~~La~~---~g~~V~atDInp~Av~-------------~v~d-----DiF~P~~~~Y~~~DLIY 94 (153)
T 2k4m_A 36 GTRVVEVGAGRFLYVSDYIRKH---SKVDLVLTDIKPSHGG-------------IVRD-----DITSPRMEIYRGAALIY 94 (153)
T ss_dssp SSEEEEETCTTCCHHHHHHHHH---SCCEEEEECSSCSSTT-------------EECC-----CSSSCCHHHHTTEEEEE
T ss_pred CCcEEEEccCCChHHHHHHHHh---CCCeEEEEECCccccc-------------eEEc-----cCCCCcccccCCcCEEE
Confidence 469999999999 477666643 2357999999987655 1111 11100000114799997
Q ss_pred ecccccCCCCHHHHHHHHHHHHhccCCeEEEE
Q 015771 110 ASYVLGEVPSLQDRITIVRQLWDLTRDVLVLV 141 (400)
Q Consensus 110 as~~L~eL~~~~~r~~~i~~Lw~~~gG~LVlV 141 (400)
+-+-=- +....+.+|.++-|.-|+|.
T Consensus 95 sirPP~------El~~~i~~lA~~v~adliI~ 120 (153)
T 2k4m_A 95 SIRPPA------EIHSSLMRVADAVGARLIIK 120 (153)
T ss_dssp EESCCT------TTHHHHHHHHHHHTCEEEEE
T ss_pred EcCCCH------HHHHHHHHHHHHcCCCEEEE
Confidence 666433 34456777777667777765
|
| >3c6k_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC, phosphoprotein; HET: SPD MTA; 1.95A {Homo sapiens} PDB: 3c6m_A* | Back alignment and structure |
|---|
Probab=95.19 E-value=0.052 Score=53.63 Aligned_cols=47 Identities=21% Similarity=0.334 Sum_probs=39.6
Q ss_pred CCCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcC
Q 015771 29 FSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQG 78 (400)
Q Consensus 29 ~~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~ 78 (400)
..|++||=+|.|.|..+..+.. ++ ..++++||+++.+++++++-+..
T Consensus 204 ~~pkrVLIIGgGdG~~~revlk-h~--~~~V~~VEIDp~VVe~ar~yfp~ 250 (381)
T 3c6k_A 204 YTGKDVLILGGGDGGILCEIVK-LK--PKMVTMVEIDQMVIDGCKKYMRK 250 (381)
T ss_dssp CTTCEEEEEECTTCHHHHHHHT-TC--CSEEEEEESCHHHHHHHHHHCCC
T ss_pred CCCCeEEEECCCcHHHHHHHHh-cC--CceeEEEccCHHHHHHHHhhchh
Confidence 3578999999999999888775 33 26899999999999999997754
|
| >1rjd_A PPM1P, carboxy methyl transferase for protein phosphatase 2A catalytic subunit; SAM dependent methyltransferase; HET: SAM; 1.80A {Saccharomyces cerevisiae} SCOP: c.66.1.37 PDB: 1rje_A* 1rjf_A 1rjg_A* 2ob2_A* 2ob1_A | Back alignment and structure |
|---|
Probab=95.15 E-value=0.14 Score=49.58 Aligned_cols=111 Identities=11% Similarity=0.158 Sum_probs=72.8
Q ss_pred CCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCC-----------------------CCCCceee
Q 015771 31 PAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGP-----------------------KDLPLIHS 87 (400)
Q Consensus 31 p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~-----------------------~~~~~~~~ 87 (400)
...|+.+|||..|..|.+....+ ...++=||. |++++.-++++.+. .+...+..
T Consensus 98 ~~qVV~LGaGlDTr~~RL~~~~~--~~~~~EvD~-P~vi~~K~~~l~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~v~~ 174 (334)
T 1rjd_A 98 KVQVVNLGCGSDLRMLPLLQMFP--HLAYVDIDY-NESVELKNSILRESEILRISLGLSKEDTAKSPFLIDQGRYKLAAC 174 (334)
T ss_dssp SEEEEEETCTTCCTHHHHHHHCT--TEEEEEEEC-HHHHHHHHHHHHHSHHHHHHHTCCSSCCCCTTEEEECSSEEEEEC
T ss_pred CcEEEEeCCCCccHHHHhcCcCC--CCEEEECCC-HHHHHHHHHHhhhccchhhhcccccccccccccccCCCceEEEec
Confidence 36899999999999999876543 356777787 78877766665432 11111111
Q ss_pred c----hhhhHhhhhcccCCCcccEEeecccccCCCCHHHHHHHHHHHHhc-cCCeEEEEcCCCC
Q 015771 88 Y----NSIQALNKDISKSEREHDLVIASYVLGEVPSLQDRITIVRQLWDL-TRDVLVLVEPGTP 146 (400)
Q Consensus 88 ~----~~~~~l~~~l~~~~~~~DLVias~~L~eL~~~~~r~~~i~~Lw~~-~gG~LVlVE~Gtp 146 (400)
. .+...+-...+ ......++|+--+|..|+ .++-..+++.+.+. ++|.+|+.|.-.|
T Consensus 175 DL~d~~w~~~ll~~~~-d~~~Ptl~iaEgvL~YL~-~~~~~~ll~~ia~~~~~~~~v~~e~i~~ 236 (334)
T 1rjd_A 175 DLNDITETTRLLDVCT-KREIPTIVISECLLCYMH-NNESQLLINTIMSKFSHGLWISYDPIGG 236 (334)
T ss_dssp CTTCHHHHHHHHHTTC-CTTSCEEEEEESCGGGSC-HHHHHHHHHHHHHHCSSEEEEEEEECCC
T ss_pred CCCCcHHHHHHHHhcC-CCCCCEEEEEcchhhCCC-HHHHHHHHHHHHhhCCCcEEEEEeccCC
Confidence 1 00111111222 335678999999999997 77777888888765 7888888887544
|
| >2wk1_A NOVP; transferase, O-methyltransferase, novobiocin, TYLF superfamily; HET: SAH; 1.40A {Streptomyces caeruleus} | Back alignment and structure |
|---|
Probab=94.73 E-value=0.079 Score=50.24 Aligned_cols=118 Identities=8% Similarity=0.057 Sum_probs=65.5
Q ss_pred HHHHHHHHHHHHHCCCCCCCeEEEEccchhHHHHHHHHHCCC---CCcEEEEEeCCHH----------------------
Q 015771 13 LFTLLVTESFARRLPGFSPAKVLDFGAGTGSAFWALREVWPR---SLEKVNLVEPSQS---------------------- 67 (400)
Q Consensus 13 a~~~~vL~el~~rlp~~~p~~VLDvG~G~Gt~~~Al~~~~~~---~~~~v~~vD~S~~---------------------- 67 (400)
..++.++..+... -.|..||++|+..|..++.++...+. ...+++++|....
T Consensus 92 ~~L~~l~~~v~~~---~~pg~IlEiGv~~G~Sai~ma~~l~~~g~~~~kI~~~DtfeG~pe~~~~~~~~d~~~~~~~~~~ 168 (282)
T 2wk1_A 92 ENIRQCVEDVIGN---NVPGDLVETGVWRGGACILMRGILRAHDVRDRTVWVADSFQGIPDVGEDGYAGDRKMALHRRNS 168 (282)
T ss_dssp HHHHHHHHHHHHT---TCCCEEEEECCTTSHHHHHHHHHHHHTTCCSCCEEEEECSSCSCCCCTTSCHHHHHHCGGGGHH
T ss_pred HHHHHHHHHHHhc---CCCCcEEEeecCchHHHHHHHHHhHhcCCCCCEEEEEECCCCCCcccccccccccccccccccc
Confidence 3444445544432 35789999999999877766655421 2467999996421
Q ss_pred ----HHHHHHHhhcCCC----CCCceeechhhhHhhhhccc-CCCcccEEeecccccCCCCHHHHHHHHHHHHhc--cCC
Q 015771 68 ----MQRAGQSLMQGPK----DLPLIHSYNSIQALNKDISK-SEREHDLVIASYVLGEVPSLQDRITIVRQLWDL--TRD 136 (400)
Q Consensus 68 ----ml~~a~~ll~~~~----~~~~~~~~~~~~~l~~~l~~-~~~~~DLVias~~L~eL~~~~~r~~~i~~Lw~~--~gG 136 (400)
+.+.+++.++..+ .+..+.. +..+.++. ..++||+|..--- ....-...++.++.+ +||
T Consensus 169 ~~~~~~~~ar~n~~~~gl~~~~I~li~G-----da~etL~~~~~~~~d~vfIDaD-----~y~~~~~~Le~~~p~L~pGG 238 (282)
T 2wk1_A 169 VLAVSEEEVRRNFRNYDLLDEQVRFLPG-----WFKDTLPTAPIDTLAVLRMDGD-----LYESTWDTLTNLYPKVSVGG 238 (282)
T ss_dssp HHCCCHHHHHHHHHHTTCCSTTEEEEES-----CHHHHSTTCCCCCEEEEEECCC-----SHHHHHHHHHHHGGGEEEEE
T ss_pred cchhHHHHHHHHHHHcCCCcCceEEEEe-----CHHHHHhhCCCCCEEEEEEcCC-----ccccHHHHHHHHHhhcCCCE
Confidence 3455666665432 1222222 12223332 2457999876542 122334566667665 666
Q ss_pred eEEEEcC
Q 015771 137 VLVLVEP 143 (400)
Q Consensus 137 ~LVlVE~ 143 (400)
++|+=+-
T Consensus 239 iIv~DD~ 245 (282)
T 2wk1_A 239 YVIVDDY 245 (282)
T ss_dssp EEEESSC
T ss_pred EEEEcCC
Confidence 5554444
|
| >1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=94.55 E-value=0.054 Score=50.40 Aligned_cols=45 Identities=11% Similarity=0.090 Sum_probs=38.4
Q ss_pred CCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcC
Q 015771 30 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQG 78 (400)
Q Consensus 30 ~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~ 78 (400)
....|||..||+||.+.++... ..+++++|.++.+.++++..++.
T Consensus 212 ~~~~vlD~f~GsGtt~~~a~~~----gr~~ig~e~~~~~~~~~~~r~~~ 256 (260)
T 1g60_A 212 PNDLVLDCFMGSGTTAIVAKKL----GRNFIGCDMNAEYVNQANFVLNQ 256 (260)
T ss_dssp TTCEEEESSCTTCHHHHHHHHT----TCEEEEEESCHHHHHHHHHHHHC
T ss_pred CCCEEEECCCCCCHHHHHHHHc----CCeEEEEeCCHHHHHHHHHHHHh
Confidence 3468999999999999988743 46899999999999999988764
|
| >3eld_A Methyltransferase; flavivirus, RNA capping, guanylyltransfer viral enzyme structure; HET: SFG; 1.90A {Wesselsbron virus} PDB: 3elu_A* 3elw_A* 3ely_A* 3emb_A* 3emd_A* | Back alignment and structure |
|---|
Probab=94.53 E-value=0.03 Score=53.36 Aligned_cols=45 Identities=18% Similarity=0.140 Sum_probs=31.2
Q ss_pred HHHHHHCCCCCC-CeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHH
Q 015771 20 ESFARRLPGFSP-AKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQS 67 (400)
Q Consensus 20 ~el~~rlp~~~p-~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ 67 (400)
.|+-++ .-+.+ .+|||+||+||..+..+.+.. ....|.++|.+..
T Consensus 71 ~ei~ek-~l~~~g~~vlDLGaaPGgWsqva~~~~--gv~sV~Gvdlg~~ 116 (300)
T 3eld_A 71 RWLHER-GYLRITGRVLDLGCGRGGWSYYAAAQK--EVMSVKGYTLGIE 116 (300)
T ss_dssp HHHHHH-TSCCCCEEEEEETCTTCHHHHHHHTST--TEEEEEEECCCCT
T ss_pred HHHHHh-CCCCCCCEEEEcCCCCCHHHHHHHHhc--CCceeeeEEeccc
Confidence 344444 33444 689999999999998887543 2457888998754
|
| >3ufb_A Type I restriction-modification system methyltran subunit; methyltransferase activity, transferase; 1.80A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=94.32 E-value=0.13 Score=52.96 Aligned_cols=126 Identities=18% Similarity=0.183 Sum_probs=70.4
Q ss_pred CCCeEEEEccchhHHHHHHHHHCCCC-----------CcEEEEEeCCHHHHHHHHHhh--cCCCCCCceeechhhhHhhh
Q 015771 30 SPAKVLDFGAGTGSAFWALREVWPRS-----------LEKVNLVEPSQSMQRAGQSLM--QGPKDLPLIHSYNSIQALNK 96 (400)
Q Consensus 30 ~p~~VLDvG~G~Gt~~~Al~~~~~~~-----------~~~v~~vD~S~~ml~~a~~ll--~~~~~~~~~~~~~~~~~l~~ 96 (400)
...+|+|-.||+|.++.++.+.+... ...++++|.++.+..+|+..+ .... .+.+....+ +..
T Consensus 217 ~~~~I~DPacGsGgfL~~a~~~l~~~~~~~~~~~~~~~~~i~G~E~~~~~~~la~mNl~lhg~~-~~~I~~~dt---L~~ 292 (530)
T 3ufb_A 217 LGESVLDPACGTGGFLVEAFEHLERQCKTVEDREVLQESSIFGGEAKSLPYLLVQMNLLLHGLE-YPRIDPENS---LRF 292 (530)
T ss_dssp TTCCEEETTCTTTHHHHHHHHHHHTTCCSHHHHHHHHTCCEEEECCSHHHHHHHHHHHHHHTCS-CCEEECSCT---TCS
T ss_pred CCCEEEeCCCCcchHHHHHHHHHHHhccchhHHHHHhhhhhhhhhccHHHHHHHHHHHHhcCCc-ccccccccc---ccC
Confidence 34699999999999998876654221 136999999999999887643 2221 122211111 110
Q ss_pred hc--ccCCCcccEEeecccccCCC-------------CHHHHHHHHHHHHhc---------cCCeEEEEcCCC---CCch
Q 015771 97 DI--SKSEREHDLVIASYVLGEVP-------------SLQDRITIVRQLWDL---------TRDVLVLVEPGT---PQGS 149 (400)
Q Consensus 97 ~l--~~~~~~~DLVias~~L~eL~-------------~~~~r~~~i~~Lw~~---------~gG~LVlVE~Gt---p~Gf 149 (400)
.. .....+||+||++-=++.-. ....-..++..++.. +||.+.+|-|.. ..|.
T Consensus 293 ~~~~~~~~~~fD~Il~NPPf~~~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~~~~~l~~gGr~avVlP~g~Lf~~~~ 372 (530)
T 3ufb_A 293 PLREMGDKDRVDVILTNPPFGGEEEKGILGNFPEDMQTAETAMLFLQLIMRKLKRPGHGSDNGGRAAVVVPNGTLFSDGI 372 (530)
T ss_dssp CGGGCCGGGCBSEEEECCCSSCBCCHHHHTTSCGGGCCCBHHHHHHHHHHHHBCCTTSSSSSCCEEEEEEEHHHHHCCTH
T ss_pred chhhhcccccceEEEecCCCCccccccccccCchhcccchhHHHHHHHHHHHhhhhhhccCCCceEEEEecchhhhccch
Confidence 00 11235799999864432111 111112233333321 589999887732 2222
Q ss_pred HHHHHHHHHHHH
Q 015771 150 SIISQMRSHILW 161 (400)
Q Consensus 150 ~~I~~aR~~lL~ 161 (400)
+ ..+|+.|++
T Consensus 373 ~--~~iRk~Lle 382 (530)
T 3ufb_A 373 S--ARIKEELLK 382 (530)
T ss_dssp H--HHHHHHHHH
T ss_pred H--HHHHHHHhh
Confidence 2 457999984
|
| >2uyo_A Hypothetical protein ML2640; putative methyltransferase, transferas; 1.7A {Mycobacterium leprae} SCOP: c.66.1.57 PDB: 2ckd_A 2uyq_A* | Back alignment and structure |
|---|
Probab=94.30 E-value=0.57 Score=44.80 Aligned_cols=124 Identities=12% Similarity=0.095 Sum_probs=77.5
Q ss_pred HHHHHHHHCCCCCCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCC-----CCCceeech--h
Q 015771 18 VTESFARRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK-----DLPLIHSYN--S 90 (400)
Q Consensus 18 vL~el~~rlp~~~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~-----~~~~~~~~~--~ 90 (400)
.+++..+..-.-.+..|+++|||-=|..+.+. |+ ....|+-|| -|.++...++++.+.. +..++.... .
T Consensus 90 ~~d~~v~~~~~~g~~QvV~LGaGlDTra~Rl~--~~-~~~~v~evD-~P~vi~~k~~lL~~~~~~~~~~~~~v~~Dl~d~ 165 (310)
T 2uyo_A 90 FFDTYFNNAVIDGIRQFVILASGLDSRAYRLD--WP-TGTTVYEID-QPKVLAYKSTTLAEHGVTPTADRREVPIDLRQD 165 (310)
T ss_dssp HHHHHHHHHHHTTCCEEEEETCTTCCHHHHSC--CC-TTCEEEEEE-CHHHHHHHHHHHHHTTCCCSSEEEEEECCTTSC
T ss_pred HHHHHHHHHHHhCCCeEEEeCCCCCchhhhcc--CC-CCcEEEEcC-CHHHHHHHHHHHHhcCCCCCCCeEEEecchHhh
Confidence 45554433211134689999999888876654 44 236889999 5999999999886321 111221110 0
Q ss_pred h-hHhhhhcccCCCcccEEeecccccCCCCHHHHHHHHHHHHhc-cCCeEEEEcCCCCC
Q 015771 91 I-QALNKDISKSEREHDLVIASYVLGEVPSLQDRITIVRQLWDL-TRDVLVLVEPGTPQ 147 (400)
Q Consensus 91 ~-~~l~~~l~~~~~~~DLVias~~L~eL~~~~~r~~~i~~Lw~~-~gG~LVlVE~Gtp~ 147 (400)
+ ..+... .......-++++--+|++|+ .++-..+++.+... +.|..|++|..++.
T Consensus 166 ~~~~l~~~-g~d~~~Pt~~i~Egvl~Yl~-~~~~~~ll~~l~~~~~~gs~l~~d~~~~~ 222 (310)
T 2uyo_A 166 WPPALRSA-GFDPSARTAWLAEGLLMYLP-ATAQDGLFTEIGGLSAVGSRIAVETSPLH 222 (310)
T ss_dssp HHHHHHHT-TCCTTSCEEEEECSCGGGSC-HHHHHHHHHHHHHTCCTTCEEEEECCCTT
T ss_pred HHHHHHhc-cCCCCCCEEEEEechHhhCC-HHHHHHHHHHHHHhCCCCeEEEEEecCCC
Confidence 1 111110 11223456888889999997 56677888888875 56777788887765
|
| >1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=93.06 E-value=0.19 Score=49.22 Aligned_cols=54 Identities=19% Similarity=0.199 Sum_probs=41.5
Q ss_pred CCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCCCCceee
Q 015771 31 PAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHS 87 (400)
Q Consensus 31 p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~~~~~~~ 87 (400)
...|||+|.|+|+.+.++++... ..++++||.+..++...+.++ ...++..++.
T Consensus 59 ~~~VlEIGPG~G~LT~~Ll~~~~--~~~vvavE~D~~l~~~L~~~~-~~~~l~ii~~ 112 (353)
T 1i4w_A 59 ELKVLDLYPGVGIQSAIFYNKYC--PRQYSLLEKRSSLYKFLNAKF-EGSPLQILKR 112 (353)
T ss_dssp TCEEEEESCTTCHHHHHHHHHHC--CSEEEEECCCHHHHHHHHHHT-TTSSCEEECS
T ss_pred CCEEEEECCCCCHHHHHHHhhCC--CCEEEEEecCHHHHHHHHHhc-cCCCEEEEEC
Confidence 37899999999999999986431 357999999999999888876 3334444443
|
| >1zkd_A DUF185; NESG, RPR58, structural genomics, PSI, protein structure INI northeast structural genomics consortium, unknown function; 2.10A {Rhodopseudomonas palustris} SCOP: c.66.1.52 | Back alignment and structure |
|---|
Probab=91.63 E-value=0.95 Score=44.71 Aligned_cols=83 Identities=18% Similarity=0.312 Sum_probs=50.5
Q ss_pred CCCCCCCeEEEEccchhHHHHHHHHHCCC-----CCcEEEEEeCCHHHHHHHHHhhcCCCCCCceeechhhhHhhhhccc
Q 015771 26 LPGFSPAKVLDFGAGTGSAFWALREVWPR-----SLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDISK 100 (400)
Q Consensus 26 lp~~~p~~VLDvG~G~Gt~~~Al~~~~~~-----~~~~v~~vD~S~~ml~~a~~ll~~~~~~~~~~~~~~~~~l~~~l~~ 100 (400)
++.-.+.+|+|+|+|.|+++.-+...+.. ...+|+.||.|+.+.+.=++.+.... + +.- ...+. .++
T Consensus 76 ~g~p~~~~ivElGaG~GtLa~diL~~l~~~p~~~~~~~y~iVE~Sp~Lr~~Q~~~L~~~~--~-v~W---~~~l~-~lp- 147 (387)
T 1zkd_A 76 ADEPQTLRLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEINPVLRQKQQTLLAGIR--N-IHW---HDSFE-DVP- 147 (387)
T ss_dssp TTCCSSEEEEEECCTTSHHHHHHHHHHTTSHHHHTTEEEEEECCCHHHHHHHHHHSTTCS--S-EEE---ESSGG-GSC-
T ss_pred cCCCCCcEEEEECCCcchHHHHHHHHHHhCCccccccEEEEEecCHHHHHHHHHHhcCCC--C-eEE---eCChh-hcC-
Confidence 33334568999999999998766554321 23489999999999886666665432 1 111 11121 122
Q ss_pred CCCcccEEeecccccCCC
Q 015771 101 SEREHDLVIASYVLGEVP 118 (400)
Q Consensus 101 ~~~~~DLVias~~L~eL~ 118 (400)
...-+|+++-+|.-+|
T Consensus 148 --~~~~~viANE~fDAlP 163 (387)
T 1zkd_A 148 --EGPAVILANEYFDVLP 163 (387)
T ss_dssp --CSSEEEEEESSGGGSC
T ss_pred --CCCeEEEeccccccCc
Confidence 1234666766777776
|
| >3tka_A Ribosomal RNA small subunit methyltransferase H; HET: SAM CTN PG4; 2.25A {Escherichia coli} | Back alignment and structure |
|---|
Probab=91.59 E-value=0.36 Score=46.88 Aligned_cols=57 Identities=7% Similarity=0.010 Sum_probs=44.2
Q ss_pred HHHHHHHHCCCCCCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHh
Q 015771 18 VTESFARRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSL 75 (400)
Q Consensus 18 vL~el~~rlp~~~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~l 75 (400)
.|.|+...+..-....++|..+|.|.-+.++++..+ ...+|+++|.++.+++.++.+
T Consensus 45 Ll~Evl~~L~i~pggiyVD~TlG~GGHS~~iL~~lg-~~GrVig~D~Dp~Al~~A~rL 101 (347)
T 3tka_A 45 LLDEAVNGLNIRPDGIYIDGTFGRGGHSRLILSQLG-EEGRLLAIDRDPQAIAVAKTI 101 (347)
T ss_dssp TTHHHHHHTCCCTTCEEEESCCTTSHHHHHHHTTCC-TTCEEEEEESCHHHHHHHTTC
T ss_pred cHHHHHHhhCCCCCCEEEEeCcCCCHHHHHHHHhCC-CCCEEEEEECCHHHHHHHHhh
Confidence 356666665432346899999999999999887764 346899999999999999643
|
| >2oo3_A Protein involved in catabolism of external DNA; structural genomics, unknown function, PSI-2, protein structure initiative; 2.00A {Legionella pneumophila subsp} SCOP: c.66.1.59 | Back alignment and structure |
|---|
Probab=90.85 E-value=0.7 Score=43.65 Aligned_cols=109 Identities=11% Similarity=0.081 Sum_probs=63.9
Q ss_pred CCCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCCCCceeechhhhHhhhhcccCCCcccEE
Q 015771 29 FSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDISKSEREHDLV 108 (400)
Q Consensus 29 ~~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~~~~~~~~~~~~~l~~~l~~~~~~~DLV 108 (400)
+.+..+||+=+|+|...+.+.. ...+++.||.++...+.-++.++......++... -...+..-.+ +..+||+|
T Consensus 90 ~n~~~~LDlfaGSGaLgiEaLS----~~d~~vfvE~~~~a~~~L~~Nl~~~~~~~V~~~D-~~~~L~~l~~-~~~~fdLV 163 (283)
T 2oo3_A 90 INLNSTLSYYPGSPYFAINQLR----SQDRLYLCELHPTEYNFLLKLPHFNKKVYVNHTD-GVSKLNALLP-PPEKRGLI 163 (283)
T ss_dssp HSSSSSCCEEECHHHHHHHHSC----TTSEEEEECCSHHHHHHHTTSCCTTSCEEEECSC-HHHHHHHHCS-CTTSCEEE
T ss_pred hcCCCceeEeCCcHHHHHHHcC----CCCeEEEEeCCHHHHHHHHHHhCcCCcEEEEeCc-HHHHHHHhcC-CCCCccEE
Confidence 3456899999999998877663 3479999999999988877777542222222211 1111221122 33579999
Q ss_pred eecccccCCCCHHHHHHHHH-HHHhccCCeEEEEcC
Q 015771 109 IASYVLGEVPSLQDRITIVR-QLWDLTRDVLVLVEP 143 (400)
Q Consensus 109 ias~~L~eL~~~~~r~~~i~-~Lw~~~gG~LVlVE~ 143 (400)
++-=-...-.......+.+. ..++.++|+++|==|
T Consensus 164 fiDPPYe~k~~~~~vl~~L~~~~~r~~~Gi~v~WYP 199 (283)
T 2oo3_A 164 FIDPSYERKEEYKEIPYAIKNAYSKFSTGLYCVWYP 199 (283)
T ss_dssp EECCCCCSTTHHHHHHHHHHHHHHHCTTSEEEEEEE
T ss_pred EECCCCCCCcHHHHHHHHHHHhCccCCCeEEEEEEe
Confidence 98543332111223333333 344447898886544
|
| >3p8z_A Mtase, non-structural protein 5; methyltransferase, RNA, ER, transferase-transferase inhibito; HET: 36A SAH; 1.70A {Dengue virus 3} SCOP: c.66.1.25 PDB: 3p97_A* 2xbm_A* 3evg_A* | Back alignment and structure |
|---|
Probab=87.30 E-value=0.58 Score=43.23 Aligned_cols=45 Identities=20% Similarity=0.269 Sum_probs=32.8
Q ss_pred HHHHHHHCCCCCC-CeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCH
Q 015771 19 TESFARRLPGFSP-AKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQ 66 (400)
Q Consensus 19 L~el~~rlp~~~p-~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~ 66 (400)
|.|+.++. .++| .+|||+||+||..+-.++... ...+|+++|...
T Consensus 67 L~ei~ek~-~l~~g~~VvDLGaapGGWSq~~a~~~--g~~~V~avdvG~ 112 (267)
T 3p8z_A 67 LQWFVERN-MVIPEGRVIDLGCGRGGWSYYCAGLK--KVTEVRGYTKGG 112 (267)
T ss_dssp HHHHHHTT-SSCCCEEEEEESCTTSHHHHHHHTST--TEEEEEEECCCS
T ss_pred HHHHHHhc-CCCCCCEEEEcCCCCCcHHHHHHHhc--CCCEEEEEecCC
Confidence 56777766 4444 599999999999887555443 346899999754
|
| >3lkz_A Non-structural protein 5; flavivirus, methyltransferase, inhibitor, P nucleotide-binding, RNA replication, viral protein; HET: SFG; 2.00A {West nile virus} | Back alignment and structure |
|---|
Probab=86.56 E-value=0.53 Score=44.80 Aligned_cols=45 Identities=20% Similarity=0.287 Sum_probs=31.3
Q ss_pred HHHHHHHCCCCCC-CeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCH
Q 015771 19 TESFARRLPGFSP-AKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQ 66 (400)
Q Consensus 19 L~el~~rlp~~~p-~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~ 66 (400)
|.++.++. .++| .+|||+||+||..+-.++... ...+|+++|...
T Consensus 83 L~ei~~~~-~l~~~~~VlDLGaapGGwsq~~~~~~--gv~~V~avdvG~ 128 (321)
T 3lkz_A 83 LRWLVERR-FLEPVGKVIDLGCGRGGWCYYMATQK--RVQEVRGYTKGG 128 (321)
T ss_dssp HHHHHHTT-SCCCCEEEEEETCTTCHHHHHHTTCT--TEEEEEEECCCS
T ss_pred HHHHHHhc-CCCCCCEEEEeCCCCCcHHHHHHhhc--CCCEEEEEEcCC
Confidence 55666553 3344 599999999999887555433 346899999754
|
| >2py6_A Methyltransferase FKBM; YP_546752.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.15A {Methylobacillus flagellatus KT} SCOP: c.66.1.56 | Back alignment and structure |
|---|
Probab=85.66 E-value=1.2 Score=44.11 Aligned_cols=47 Identities=23% Similarity=0.350 Sum_probs=37.4
Q ss_pred CCeEEEEccchhHHHHHHH-HHCCCCCcEEEEEeCCHHHHHHHHHhhcC
Q 015771 31 PAKVLDFGAGTGSAFWALR-EVWPRSLEKVNLVEPSQSMQRAGQSLMQG 78 (400)
Q Consensus 31 p~~VLDvG~G~Gt~~~Al~-~~~~~~~~~v~~vD~S~~ml~~a~~ll~~ 78 (400)
...|+|+||+.|..+..++ ...+ ...+|+++|+++...+..+..++.
T Consensus 227 ~~~viDvGAn~G~~s~~~a~~~~~-~~~~V~afEP~p~~~~~L~~n~~~ 274 (409)
T 2py6_A 227 SEKMVDCGASIGESLAGLIGVTKG-KFERVWMIEPDRINLQTLQNVLRR 274 (409)
T ss_dssp SCEEEEETCTTSHHHHHHHHHHTS-CCSEEEEECCCHHHHHHHHHHHHH
T ss_pred CCEEEECCCCcCHHHHHHHHHhcC-CCCEEEEEcCCHHHHHHHHHHHHh
Confidence 3689999999998887665 4443 346899999999999888777654
|
| >4fzv_A Putative methyltransferase NSUN4; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens} PDB: 4fp9_A* | Back alignment and structure |
|---|
Probab=85.23 E-value=0.63 Score=45.54 Aligned_cols=45 Identities=22% Similarity=0.138 Sum_probs=35.9
Q ss_pred CeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcC
Q 015771 32 AKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQG 78 (400)
Q Consensus 32 ~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~ 78 (400)
.+|||+.||||.=+.++++... ...++++|.|+.-++..+..++.
T Consensus 150 ~~VLD~CAaPGGKT~~la~~~~--~~~l~A~D~~~~R~~~l~~~l~r 194 (359)
T 4fzv_A 150 DIVLDLCAAPGGKTLALLQTGC--CRNLAANDLSPSRIARLQKILHS 194 (359)
T ss_dssp EEEEESSCTTCHHHHHHHHTTC--EEEEEEECSCHHHHHHHHHHHHH
T ss_pred CEEEEecCCccHHHHHHHHhcC--CCcEEEEcCCHHHHHHHHHHHHH
Confidence 6999999999987777776543 35799999999988777776653
|
| >1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=84.72 E-value=1.1 Score=43.00 Aligned_cols=45 Identities=13% Similarity=-0.031 Sum_probs=39.0
Q ss_pred CCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCC
Q 015771 31 PAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGP 79 (400)
Q Consensus 31 p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~ 79 (400)
...|||.=||+||.+.|+... ..+++++|.++.+.++++..+...
T Consensus 253 ~~~VlDpF~GsGtt~~aa~~~----gr~~ig~e~~~~~~~~~~~r~~~~ 297 (323)
T 1boo_A 253 DDLVVDIFGGSNTTGLVAERE----SRKWISFEMKPEYVAASAFRFLDN 297 (323)
T ss_dssp TCEEEETTCTTCHHHHHHHHT----TCEEEEEESCHHHHHHHHGGGSCS
T ss_pred CCEEEECCCCCCHHHHHHHHc----CCCEEEEeCCHHHHHHHHHHHHhc
Confidence 468999999999999887743 468999999999999999998764
|
| >2c7p_A Modification methylase HHAI; DNA methyltransferase, methyltransferase, base flipping, restriction system, transferase; HET: 5CM A1P SAH EPE CIT; 1.7A {Haemophilus haemolyticus} SCOP: c.66.1.26 PDB: 10mh_A* 1m0e_A* 1mht_A* 1hmy_A* 1skm_A* 2c7o_A* 2c7q_A* 2hmy_B* 2hr1_A* 3eeo_A* 3mht_A* 4mht_A* 5mht_A* 6mht_A* 7mht_A* 8mht_A* 9mht_A* 2zcj_A* 2z6u_A* 2z6q_A* ... | Back alignment and structure |
|---|
Probab=81.60 E-value=4.3 Score=38.86 Aligned_cols=46 Identities=22% Similarity=0.099 Sum_probs=37.8
Q ss_pred CCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcC
Q 015771 30 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQG 78 (400)
Q Consensus 30 ~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~ 78 (400)
...+|||+-||.|....++... ....+.++|.++...+..+..+..
T Consensus 10 ~~~~~~dLFaG~Gg~~~g~~~a---G~~~v~~~e~d~~a~~t~~~N~~~ 55 (327)
T 2c7p_A 10 TGLRFIDLFAGLGGFRLALESC---GAECVYSNEWDKYAQEVYEMNFGE 55 (327)
T ss_dssp TTCEEEEETCTTTHHHHHHHHT---TCEEEEEECCCHHHHHHHHHHHSC
T ss_pred CCCcEEEECCCcCHHHHHHHHC---CCeEEEEEeCCHHHHHHHHHHcCC
Confidence 3468999999999998887643 356788999999999988887754
|
| >2px2_A Genome polyprotein [contains: capsid protein C (core protein); envelope protein M...; methyltransferase, SAH; HET: SAH; 2.00A {Murray valley encephalitis virus} PDB: 2px4_A* 2px5_A* 2pxa_A* 2pxc_A* 2px8_A* 2oy0_A* | Back alignment and structure |
|---|
Probab=80.71 E-value=0.92 Score=42.31 Aligned_cols=31 Identities=26% Similarity=0.358 Sum_probs=25.0
Q ss_pred HHHHHHHCCCCCC-CeEEEEccchhHHHHHHHH
Q 015771 19 TESFARRLPGFSP-AKVLDFGAGTGSAFWALRE 50 (400)
Q Consensus 19 L~el~~rlp~~~p-~~VLDvG~G~Gt~~~Al~~ 50 (400)
|.||.++. -++| .+|||+||+||.-+..+++
T Consensus 62 L~EIdeK~-likpg~~VVDLGaAPGGWSQvAa~ 93 (269)
T 2px2_A 62 LRWLVERR-FVQPIGKVVDLGCGRGGWSYYAAT 93 (269)
T ss_dssp HHHHHHTT-SCCCCEEEEEETCTTSHHHHHHTT
T ss_pred HHHHHHcC-CCCCCCEEEEcCCCCCHHHHHHhh
Confidence 67888875 6776 5999999999998777664
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 400 | |||
| d1im8a_ | 225 | Hypothetical protein HI0319 (YecO) {Haemophilus in | 99.56 | |
| d1vl5a_ | 231 | Hypothetical protein BH2331 {Bacillus halodurans [ | 99.44 | |
| d1xxla_ | 234 | Hypothetical protein YcgJ {Bacillus subtilis [TaxI | 99.41 | |
| d1jqea_ | 280 | Histamine methyltransferase {Human (Homo sapiens) | 99.37 | |
| d1ve3a1 | 226 | Hypothetical protein PH0226 {Archaeon Pyrococcus h | 99.36 | |
| d1wzna1 | 251 | Hypothetical methyltransferase PH1305 {Archaeon Py | 99.35 | |
| d2o57a1 | 282 | Putative sarcosine dimethylglycine methyltransfera | 99.32 | |
| d1y8ca_ | 246 | Putative methyltransferase CAC2371 {Clostridium ac | 99.31 | |
| d2i6ga1 | 198 | Putative methyltransferase TehB {Salmonella typhim | 99.3 | |
| d1xtpa_ | 254 | Hypothetical protein Lmaj004091aaa (LmjF30.0810) { | 99.29 | |
| d2avna1 | 246 | Hypothetical methyltransferase TM1389 {Thermotoga | 99.27 | |
| d2gh1a1 | 281 | Methyltransferase BC2162 {Bacillus cereus [TaxId: | 99.26 | |
| d1nkva_ | 245 | Hypothetical Protein YjhP {Escherichia coli [TaxId | 99.25 | |
| d1vlma_ | 208 | Possible histamine N-methyltransferase TM1293 {The | 99.24 | |
| d2ex4a1 | 222 | Adrenal gland protein AD-003 (C9orf32) {Human (Hom | 99.21 | |
| d2p7ia1 | 225 | Hypothetical protein ECA1738 {Erwinia carotovora [ | 99.21 | |
| d1pjza_ | 201 | Thiopurine S-methyltransferase {Pseudomonas syring | 99.17 | |
| d1ri5a_ | 252 | mRNA cap (Guanine N-7) methyltransferase {Fungus ( | 99.12 | |
| d1tw3a2 | 253 | Carminomycin 4-O-methyltransferase {Streptomyces p | 99.09 | |
| d1p91a_ | 268 | rRNA methyltransferase RlmA {Escherichia coli [Tax | 99.06 | |
| d1g8sa_ | 230 | Fibrillarin homologue {Archaeon Methanococcus jann | 99.04 | |
| d1xvaa_ | 292 | Glycine N-methyltransferase {Rat (Rattus norvegicu | 99.04 | |
| d2fk8a1 | 280 | Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri | 99.04 | |
| d1qzza2 | 256 | Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu | 98.99 | |
| d2bzga1 | 229 | Thiopurine S-methyltransferase {Human (Homo sapien | 98.96 | |
| d1dusa_ | 194 | Hypothetical protein MJ0882 {Archaeon Methanococcu | 98.94 | |
| d2g72a1 | 263 | Phenylethanolamine N-methyltransferase, PNMTase {H | 98.93 | |
| d2nxca1 | 254 | PrmA-like protein TTHA0656 (TT0836) {Thermus therm | 98.91 | |
| d2a14a1 | 257 | Indolethylamine N-methyltransferase, INMT {Human ( | 98.91 | |
| d1zx0a1 | 229 | Guanidinoacetate methyltransferase {Human (Homo sa | 98.89 | |
| d1kpia_ | 291 | CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} | 98.89 | |
| d1dl5a1 | 213 | Protein-L-isoaspartyl O-methyltransferase {Thermot | 98.86 | |
| d1kpga_ | 285 | CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} | 98.86 | |
| d1l3ia_ | 186 | Precorrin-6Y methyltransferase (CbiT) {Archaeon Me | 98.82 | |
| d1yb2a1 | 250 | Hypothetical protein Ta0852 {Thermoplasma acidophi | 98.81 | |
| d1nt2a_ | 209 | Fibrillarin homologue {Archaeon Archaeoglobus fulg | 98.79 | |
| d1g8aa_ | 227 | Fibrillarin homologue {Archaeon Pyrococcus horikos | 98.75 | |
| d1vbfa_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Sulfolo | 98.75 | |
| d1i9ga_ | 264 | Probable methyltransferase Rv2118c {Mycobacterium | 98.73 | |
| d1o54a_ | 266 | Hypothetical protein TM0748 {Thermotoga maritima [ | 98.68 | |
| d1i1na_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Human ( | 98.67 | |
| d1nw3a_ | 328 | Catalytic, N-terminal domain of histone methyltran | 98.56 | |
| d2fcaa1 | 204 | tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil | 98.55 | |
| d1g6q1_ | 328 | Arginine methyltransferase, HMT1 {Baker's yeast (S | 98.5 | |
| d1u2za_ | 406 | Catalytic, N-terminal domain of histone methyltran | 98.48 | |
| d2fyta1 | 311 | Protein arginine N-methyltransferase 3, PRMT3 {Hum | 98.44 | |
| d1af7a2 | 193 | Chemotaxis receptor methyltransferase CheR, C-term | 98.44 | |
| d1ne2a_ | 197 | Hypothetical protein Ta1320 {Archaeon Thermoplasma | 98.43 | |
| d1wy7a1 | 201 | Hypothetical protein PH1948 {Archaeon Pyrococcus h | 98.42 | |
| d2b25a1 | 324 | Hypothetical protein FLJ20628 {Human (Homo sapiens | 98.4 | |
| d2b3ta1 | 274 | N5-glutamine methyltransferase, HemK {Escherichia | 98.38 | |
| d1fp1d2 | 244 | Chalcone O-methyltransferase {Alfalfa (Medicago sa | 98.35 | |
| d1oria_ | 316 | Protein arginine N-methyltransferase 1, PRMT1 {Rat | 98.33 | |
| d1jg1a_ | 215 | Protein-L-isoaspartyl O-methyltransferase {Archaeo | 98.32 | |
| d1yzha1 | 204 | tRNA (guanine-N(7)-)-methyltransferase TrmB {Strep | 98.27 | |
| d1wxxa2 | 318 | Hypothetical protein TTHA1280, middle and C-termin | 98.27 | |
| d1r18a_ | 223 | Protein-L-isoaspartyl O-methyltransferase {Fruit f | 98.23 | |
| d1ws6a1 | 171 | Methyltransferase TTHA0928 {Thermus thermophilus [ | 98.15 | |
| d2avda1 | 219 | COMT domain-containing protein 1, COMTD1 {Human (H | 98.11 | |
| d2esra1 | 152 | Putative methyltransferase SPy1538 {Streptococcus | 98.08 | |
| d1m6ya2 | 192 | TM0872, methyltransferase domain {Thermotoga marit | 98.01 | |
| d2as0a2 | 324 | Hypothetical protein PH1915, middle and C-terminal | 97.99 | |
| d2cl5a1 | 214 | Catechol O-methyltransferase, COMT {Rat (Rattus no | 97.98 | |
| d1kyza2 | 243 | Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra | 97.97 | |
| d2igta1 | 309 | Putative methyltransferase Atu0340 {Agrobacterium | 97.88 | |
| d1fp2a2 | 244 | Isoflavone O-methyltransferase {Alfalfa (Medicago | 97.87 | |
| d1susa1 | 227 | Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicag | 97.8 | |
| d2h00a1 | 250 | Methyltransferase 10 domain containing protein MET | 97.8 | |
| d2b78a2 | 317 | Hypothetical protein SMu776, middle and C-terminal | 97.74 | |
| d2fpoa1 | 183 | Methylase YhhF {Escherichia coli [TaxId: 562]} | 97.7 | |
| d2f8la1 | 328 | Hypothetical protein Lmo1582 {Listeria monocytogen | 97.64 | |
| d1nv8a_ | 271 | N5-glutamine methyltransferase, HemK {Thermotoga m | 97.63 | |
| d2frna1 | 260 | Hypothetical protein PH0793 {Pyrococcus horikoshii | 97.55 | |
| d1uira_ | 312 | Spermidine synthase {Thermus thermophilus [TaxId: | 97.41 | |
| d2fhpa1 | 182 | Putative methylase EF2452 {Enterococcus faecalis [ | 97.39 | |
| d1qama_ | 235 | rRNA adenine dimethylase {Bacillus subtilis, Ermc' | 97.29 | |
| d2b2ca1 | 312 | Spermidine synthase {Caenorhabditis elegans [TaxId | 97.24 | |
| d2ih2a1 | 223 | DNA methylase TaqI, N-terminal domain {Thermus aqu | 97.24 | |
| d1inla_ | 295 | Spermidine synthase {Thermotoga maritima [TaxId: 2 | 97.19 | |
| d1mjfa_ | 276 | Putative spermidine synthetase PF0127 (SpeE) {Arch | 97.15 | |
| d1uwva2 | 358 | rRNA (Uracil-5-)-methyltransferase RumA, catalytic | 97.08 | |
| d2ifta1 | 183 | Putative methylase HI0767 {Haemophilus influenzae | 97.03 | |
| d1iy9a_ | 274 | Spermidine synthase {Bacillus subtilis [TaxId: 142 | 96.96 | |
| d1ej0a_ | 180 | RNA methyltransferase FtsJ {Escherichia coli [TaxI | 96.94 | |
| d1jsxa_ | 207 | Glucose-inhibited division protein B (GidB) {Esche | 96.91 | |
| d2o07a1 | 285 | Spermidine synthase {Human (Homo sapiens) [TaxId: | 96.85 | |
| d1qyra_ | 252 | High level kasugamycin resistance protein KsgA {Es | 96.72 | |
| d1xj5a_ | 290 | Spermidine synthase {Thale cress (Arabidopsis thal | 96.65 | |
| d1yuba_ | 245 | rRNA adenine dimethylase {Streptococcus pneumoniae | 96.63 | |
| d1zq9a1 | 278 | Probable dimethyladenosine transferase {Human (Hom | 96.56 | |
| d1xdza_ | 239 | Glucose-inhibited division protein B (GidB) {Bacil | 96.19 | |
| d1wg8a2 | 182 | TM0872, methyltransferase domain {Thermus thermoph | 95.68 | |
| d2okca1 | 425 | Type I restriction enzyme StySJI M protein {Bacter | 95.3 | |
| d2bm8a1 | 232 | Cephalosporin hydroxylase CmcI {Streptomyces clavu | 94.21 | |
| d2ar0a1 | 524 | M.EcoKI {Escherichia coli [TaxId: 562]} | 94.15 | |
| d1i4wa_ | 322 | Transcription factor sc-mtTFB {Baker's yeast (Sacc | 93.64 | |
| d1sqga2 | 284 | Ribosomal RNA small subunit methyltransferase B, R | 93.57 | |
| d1zkda1 | 365 | Hypothetical protein RPA4359 {Rhodopseudomonas pal | 93.49 | |
| d1e3ja2 | 170 | Ketose reductase (sorbitol dehydrogenase) {Silverl | 93.41 | |
| d2b9ea1 | 293 | NOL1R {Human (Homo sapiens) [TaxId: 9606]} | 93.25 | |
| d1pl8a2 | 171 | Ketose reductase (sorbitol dehydrogenase) {Human ( | 92.25 | |
| d1ixka_ | 313 | Hypothetical methyltransferase PH1374 {Archaeon Py | 90.47 | |
| d1vj0a2 | 182 | Hypothetical protein TM0436 {Thermotoga maritima [ | 90.36 | |
| d1kola2 | 195 | Formaldehyde dehydrogenase {Pseudomonas putida [Ta | 88.81 | |
| d1m6ex_ | 359 | Salicylic acid carboxyl methyltransferase (SAMT) { | 86.14 | |
| d2dula1 | 375 | N(2),N(2)-dimethylguanosine tRNA methyltransferase | 85.56 | |
| d1booa_ | 320 | m.PvuII N4 cytosine-specific DNA methyltransferase | 84.48 | |
| d1jqba2 | 174 | Bacterial secondary alcohol dehydrogenase {Clostri | 82.32 | |
| d1g60a_ | 256 | Methyltransferase mboII {Moraxella bovis [TaxId: 4 | 81.93 | |
| d2p41a1 | 257 | An RNA cap (nucleoside-2'-O-)-methyltransferase do | 81.13 |
| >d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein HI0319 (YecO) domain: Hypothetical protein HI0319 (YecO) species: Haemophilus influenzae [TaxId: 727]
Probab=99.56 E-value=1.4e-14 Score=131.68 Aligned_cols=137 Identities=18% Similarity=0.205 Sum_probs=100.0
Q ss_pred HHHHHHhHHHHHHHHHHHHHHCCCCCCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCCCCc
Q 015771 5 LMLLLECLLFTLLVTESFARRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPL 84 (400)
Q Consensus 5 ~~~~~~~Ya~~~~vL~el~~rlp~~~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~~~~ 84 (400)
+.+..+.|..+.+.+..+.++... ...+|||+|||+|..+..++..+.....+|++||.|+.|++.|++.++.......
T Consensus 15 i~~~iP~Y~~~~~~i~~~~~~~~~-~~~~vLDlGCGtG~~~~~l~~~~~~~~~~v~giD~S~~ml~~A~~~~~~~~~~~~ 93 (225)
T d1im8a_ 15 IQRSVPGYSNIITAIGMLAERFVT-ADSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIP 93 (225)
T ss_dssp HHHHSTTHHHHHHHHHHHHHHHCC-TTCEEEEESCTTCHHHHHHHHTCCCSSCEEEEECSCHHHHHHHHHHHHTSCCSSC
T ss_pred HHhcCCCHHHHHHHHHHHHHHhcC-CCCEEEEeccchhhHHHHHHHhhcCCCCceEEeCCCHHHHHHHHHHhHhhcccch
Confidence 444556788888877777665321 2368999999999999998877654567999999999999999998876543322
Q ss_pred eeechhhhHhhhhcccCCCcccEEeecccccCCCCHHHHHHHHHHHHhc--cCCeEEEEcCCCCCc
Q 015771 85 IHSYNSIQALNKDISKSEREHDLVIASYVLGEVPSLQDRITIVRQLWDL--TRDVLVLVEPGTPQG 148 (400)
Q Consensus 85 ~~~~~~~~~l~~~l~~~~~~~DLVias~~L~eL~~~~~r~~~i~~Lw~~--~gG~LVlVE~Gtp~G 148 (400)
++.. ..+. .+.+...+|+|+++++|++++ .+++..+++++.+. |||.|++.|+..+..
T Consensus 94 ~~~~--~~d~---~~~~~~~~d~i~~~~~l~~~~-~~d~~~~l~~i~~~LkpgG~li~~~~~~~~~ 153 (225)
T d1im8a_ 94 VEIL--CNDI---RHVEIKNASMVILNFTLQFLP-PEDRIALLTKIYEGLNPNGVLVLSEKFRFED 153 (225)
T ss_dssp EEEE--CSCT---TTCCCCSEEEEEEESCGGGSC-GGGHHHHHHHHHHHEEEEEEEEEEEECCCSS
T ss_pred hhhc--cchh---hccccccceeeEEeeeccccC-hhhHHHHHHHHHHhCCCCceeeccccccccc
Confidence 2211 0111 123456789999999999996 55677888888875 899999999876554
|
| >d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein BH2331 species: Bacillus halodurans [TaxId: 86665]
Probab=99.44 E-value=1.3e-13 Score=124.88 Aligned_cols=107 Identities=14% Similarity=0.302 Sum_probs=79.6
Q ss_pred CCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCC--CCCceeechhhhHhhhhcccCCCcccEE
Q 015771 31 PAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK--DLPLIHSYNSIQALNKDISKSEREHDLV 108 (400)
Q Consensus 31 p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~--~~~~~~~~~~~~~l~~~l~~~~~~~DLV 108 (400)
..+|||+|||+|..+..+++. ..+|+++|+|+.|++.|+..+.... ++.++.. +.. .++.+.++||+|
T Consensus 16 ~~rVLDiGcG~G~~~~~l~~~----~~~v~gvD~s~~~i~~A~~~~~~~~~~~i~~~~~-----d~~-~l~~~~~~fD~v 85 (231)
T d1vl5a_ 16 NEEVLDVATGGGHVANAFAPF----VKKVVAFDLTEDILKVARAFIEGNGHQQVEYVQG-----DAE-QMPFTDERFHIV 85 (231)
T ss_dssp CCEEEEETCTTCHHHHHHGGG----SSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEEC-----CC--CCCSCTTCEEEE
T ss_pred cCEEEEecccCcHHHHHHHHh----CCEEEEEECCHHHHhhhhhccccccccccccccc-----ccc-cccccccccccc
Confidence 479999999999998887753 3589999999999999998875432 2222222 122 345556899999
Q ss_pred eecccccCCCCHHHHHHHHHHHHhccCCeEEEEcCCCCCc
Q 015771 109 IASYVLGEVPSLQDRITIVRQLWDLTRDVLVLVEPGTPQG 148 (400)
Q Consensus 109 ias~~L~eL~~~~~r~~~i~~Lw~~~gG~LVlVE~Gtp~G 148 (400)
++.++|+++++......-+.++++ |||+|+|+++..|..
T Consensus 86 ~~~~~l~~~~d~~~~l~~~~r~Lk-pgG~l~i~~~~~~~~ 124 (231)
T d1vl5a_ 86 TCRIAAHHFPNPASFVSEAYRVLK-KGGQLLLVDNSAPEN 124 (231)
T ss_dssp EEESCGGGCSCHHHHHHHHHHHEE-EEEEEEEEEEEBCSS
T ss_pred cccccccccCCHHHHHHHHHHhcC-CCcEEEEEeCCCCCC
Confidence 999999999876654444445543 899999999887764
|
| >d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein YcgJ species: Bacillus subtilis [TaxId: 1423]
Probab=99.41 E-value=2.7e-13 Score=123.69 Aligned_cols=106 Identities=17% Similarity=0.335 Sum_probs=80.2
Q ss_pred CeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCC--CCCCceeechhhhHhhhhcccCCCcccEEe
Q 015771 32 AKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGP--KDLPLIHSYNSIQALNKDISKSEREHDLVI 109 (400)
Q Consensus 32 ~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~--~~~~~~~~~~~~~~l~~~l~~~~~~~DLVi 109 (400)
.+|||+|||+|..+..+++. ..+|++||+|+.|++.|++.+... .++.++.. +.. .++.+.++||+|+
T Consensus 18 ~rILDiGcGtG~~~~~la~~----~~~v~gvD~S~~~l~~A~~~~~~~~~~~~~~~~~-----d~~-~~~~~~~~fD~v~ 87 (234)
T d1xxla_ 18 HRVLDIGAGAGHTALAFSPY----VQECIGVDATKEMVEVASSFAQEKGVENVRFQQG-----TAE-SLPFPDDSFDIIT 87 (234)
T ss_dssp CEEEEESCTTSHHHHHHGGG----SSEEEEEESCHHHHHHHHHHHHHHTCCSEEEEEC-----BTT-BCCSCTTCEEEEE
T ss_pred CEEEEeCCcCcHHHHHHHHh----CCeEEEEeCChhhhhhhhhhhccccccccccccc-----ccc-cccccccccceee
Confidence 79999999999999888753 358999999999999999887542 22222221 222 3455678999999
Q ss_pred ecccccCCCCHHHHHHHHHHHHhccCCeEEEEcCCCCCc
Q 015771 110 ASYVLGEVPSLQDRITIVRQLWDLTRDVLVLVEPGTPQG 148 (400)
Q Consensus 110 as~~L~eL~~~~~r~~~i~~Lw~~~gG~LVlVE~Gtp~G 148 (400)
+.++|+++++...-..-+.++++ |||++++++...+..
T Consensus 88 ~~~~l~~~~d~~~~l~~~~r~Lk-pgG~~~~~~~~~~~~ 125 (234)
T d1xxla_ 88 CRYAAHHFSDVRKAVREVARVLK-QDGRFLLVDHYAPED 125 (234)
T ss_dssp EESCGGGCSCHHHHHHHHHHHEE-EEEEEEEEEECBCSS
T ss_pred eeceeecccCHHHHHHHHHHeeC-CCcEEEEEEcCCCCC
Confidence 99999999877655555555553 899999999887653
|
| >d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Histamine methyltransferase domain: Histamine methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.37 E-value=1.1e-12 Score=122.72 Aligned_cols=123 Identities=16% Similarity=0.185 Sum_probs=82.8
Q ss_pred HCCCCCC-CeEEEEccchhHHHHHHHH----HCCCCCcEEEEEeCCHHHHHHHHHhhcCCCCCCceeechh---hhHhhh
Q 015771 25 RLPGFSP-AKVLDFGAGTGSAFWALRE----VWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNS---IQALNK 96 (400)
Q Consensus 25 rlp~~~p-~~VLDvG~G~Gt~~~Al~~----~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~~~~~~~~~~---~~~l~~ 96 (400)
++...++ .+|||+|||+|..+..++. .++.....+++||+|+.|++.+++.+....+...+..... ...+..
T Consensus 34 ~l~~~~~~~~VLDiGcG~G~~~~~ll~~l~~~~~~~~~~~~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (280)
T d1jqea_ 34 RIGDTKSEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKISNLENVKFAWHKETSSEYQS 113 (280)
T ss_dssp TTTTTCSEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECCCHHHHHHHHHHHTTCCSCTTEEEEEECSCHHHHHH
T ss_pred HhccCCCCCeEEEEcCCCCHHHHHHHHHhhhhccCCceEEEEEeCcHHHHHHHHHHHhhccccccccccchhhhhhhhcc
Confidence 3433333 3899999999988765543 3454456789999999999999998876555443322111 111111
Q ss_pred --hcccCCCcccEEeecccccCCCCHHHHHHHHHHHHhc--cCCeEEEEcCCCCCchH
Q 015771 97 --DISKSEREHDLVIASYVLGEVPSLQDRITIVRQLWDL--TRDVLVLVEPGTPQGSS 150 (400)
Q Consensus 97 --~l~~~~~~~DLVias~~L~eL~~~~~r~~~i~~Lw~~--~gG~LVlVE~Gtp~Gf~ 150 (400)
..+...++||+|++.++|+++++... +++++.+. |||.|+|+.+.....+.
T Consensus 114 ~~~~~~~~~~fD~I~~~~~l~~~~d~~~---~l~~l~~~LkpgG~l~i~~~~~~~~~~ 168 (280)
T d1jqea_ 114 RMLEKKELQKWDFIHMIQMLYYVKDIPA---TLKFFHSLLGTNAKMLIIVVSGSSGWD 168 (280)
T ss_dssp HHTTSSSCCCEEEEEEESCGGGCSCHHH---HHHHHHHTEEEEEEEEEEEECTTSHHH
T ss_pred hhcccCCCCceeEEEEccceecCCCHHH---HHHHHHhhCCCCCEEEEEEecCcchHH
Confidence 11335679999999999999987654 45555543 89999999876655553
|
| >d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical protein PH0226 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.36 E-value=2.1e-12 Score=115.76 Aligned_cols=102 Identities=17% Similarity=0.216 Sum_probs=76.9
Q ss_pred CeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCC-CCCceeechhhhHhhhhcccCCCcccEEee
Q 015771 32 AKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK-DLPLIHSYNSIQALNKDISKSEREHDLVIA 110 (400)
Q Consensus 32 ~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~-~~~~~~~~~~~~~l~~~l~~~~~~~DLVia 110 (400)
.+|||+|||+|..+..+++ ...+|+++|+|+.|++.|++.+.... ....+.. +.. .++...++||+|++
T Consensus 39 ~~ILDiGcG~G~~~~~la~----~~~~v~giD~S~~~i~~ak~~~~~~~~~~~~~~~-----d~~-~l~~~~~~fD~I~~ 108 (226)
T d1ve3a1 39 GKVLDLACGVGGFSFLLED----YGFEVVGVDISEDMIRKAREYAKSRESNVEFIVG-----DAR-KLSFEDKTFDYVIF 108 (226)
T ss_dssp CEEEEETCTTSHHHHHHHH----TTCEEEEEESCHHHHHHHHHHHHHTTCCCEEEEC-----CTT-SCCSCTTCEEEEEE
T ss_pred CEEEEECCCcchhhhhHhh----hhcccccccccccchhhhhhhhcccccccccccc-----ccc-cccccCcCceEEEE
Confidence 6999999999999988875 24589999999999999998875432 1211211 111 34556688999999
Q ss_pred cccccCCCCHHHHHHHHHHHHhc--cCCeEEEEcCC
Q 015771 111 SYVLGEVPSLQDRITIVRQLWDL--TRDVLVLVEPG 144 (400)
Q Consensus 111 s~~L~eL~~~~~r~~~i~~Lw~~--~gG~LVlVE~G 144 (400)
.++|++++ ..++..+++++.+. |||.|||..+.
T Consensus 109 ~~~l~~~~-~~d~~~~l~~i~~~LkpgG~lii~~~~ 143 (226)
T d1ve3a1 109 IDSIVHFE-PLELNQVFKEVRRVLKPSGKFIMYFTD 143 (226)
T ss_dssp ESCGGGCC-HHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred ecchhhCC-hhHHHHHHHHHHHHcCcCcEEEEEEcC
Confidence 99999996 45666777777764 89999987653
|
| >d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical methyltransferase PH1305 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.35 E-value=3.5e-12 Score=116.62 Aligned_cols=126 Identities=16% Similarity=0.134 Sum_probs=89.5
Q ss_pred HHHHHhHHHHHHHHHHHHHHCCCCCCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCC-CCCc
Q 015771 6 MLLLECLLFTLLVTESFARRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK-DLPL 84 (400)
Q Consensus 6 ~~~~~~Ya~~~~vL~el~~rlp~~~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~-~~~~ 84 (400)
.....+|..-...+.++.++...-++.+|||+|||+|..+..+++. ..+|++||+|+.|++.|++.+...+ ++.+
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLDiGcGtG~~~~~l~~~----~~~v~gvD~s~~mi~~a~~~~~~~~~~i~~ 92 (251)
T d1wzna1 17 RRRIERVKAEIDFVEEIFKEDAKREVRRVLDLACGTGIPTLELAER----GYEVVGLDLHEEMLRVARRKAKERNLKIEF 92 (251)
T ss_dssp HHHHHTHHHHHHHHHHHHHHTCSSCCCEEEEETCTTCHHHHHHHHT----TCEEEEEESCHHHHHHHHHHHHHTTCCCEE
T ss_pred HhhhhhHHHHHHHHHHHHHHhcCCCCCEEEEeCCCCCccchhhccc----ceEEEEEeeccccccccccccccccccchh
Confidence 3444556655556666666666556789999999999998888752 3589999999999999999876432 2333
Q ss_pred eeechhhhHhhhhcccCCCcccEEeec-ccccCCCCHHHHHHHHHHHHhc--cCCeEEEEcC
Q 015771 85 IHSYNSIQALNKDISKSEREHDLVIAS-YVLGEVPSLQDRITIVRQLWDL--TRDVLVLVEP 143 (400)
Q Consensus 85 ~~~~~~~~~l~~~l~~~~~~~DLVias-~~L~eL~~~~~r~~~i~~Lw~~--~gG~LVlVE~ 143 (400)
+.. ++. +++. .++||+|++. .+++++. ..++..+++++.+. |||++|+--+
T Consensus 93 ~~~-----d~~-~l~~-~~~fD~I~~~~~~~~~~~-~~~~~~~L~~~~~~LkpgG~lii~~~ 146 (251)
T d1wzna1 93 LQG-----DVL-EIAF-KNEFDAVTMFFSTIMYFD-EEDLRKLFSKVAEALKPGGVFITDFP 146 (251)
T ss_dssp EES-----CGG-GCCC-CSCEEEEEECSSGGGGSC-HHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred eeh-----hhh-hccc-ccccchHhhhhhhhhcCC-hHHHHHHHHHHHHHcCCCcEEEEEec
Confidence 322 222 3332 3589999987 4777774 66778888888875 8999987543
|
| >d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Putative sarcosine dimethylglycine methyltransferase species: Red algae (Galdieria sulphuraria) [TaxId: 130081]
Probab=99.32 E-value=3.3e-12 Score=119.68 Aligned_cols=117 Identities=15% Similarity=0.184 Sum_probs=81.3
Q ss_pred HHHHHHHHCCCCCCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCC---CCCceeechhhhHh
Q 015771 18 VTESFARRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK---DLPLIHSYNSIQAL 94 (400)
Q Consensus 18 vL~el~~rlp~~~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~---~~~~~~~~~~~~~l 94 (400)
++.++....+--++.+|||+|||+|..+..+++.++ .+|++||+|+.|++.|+......+ ++.++.. +.
T Consensus 55 ~~~~l~~~~~l~~~~~vLDiGcG~G~~~~~la~~~~---~~v~gvD~s~~~i~~a~~~~~~~gl~~~v~~~~~-----d~ 126 (282)
T d2o57a1 55 LASELAMTGVLQRQAKGLDLGAGYGGAARFLVRKFG---VSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYG-----SF 126 (282)
T ss_dssp HHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHHHC---CEEEEEESCHHHHHHHHHHHHHHTCTTTEEEEEC-----CT
T ss_pred HHHHHHHhcCCCCCCEEEEeCCCCcHHHhhhhccCC---cEEEEEeccchhhhhhhccccccccccccccccc-----cc
Confidence 334444443333457999999999999888876553 489999999999999998875431 2222222 12
Q ss_pred hhhcccCCCcccEEeecccccCCCCHHHHHHHHHHHHhccCCeEEEEcCC
Q 015771 95 NKDISKSEREHDLVIASYVLGEVPSLQDRITIVRQLWDLTRDVLVLVEPG 144 (400)
Q Consensus 95 ~~~l~~~~~~~DLVias~~L~eL~~~~~r~~~i~~Lw~~~gG~LVlVE~G 144 (400)
. .++.+.++||+|++..+|+++++......-+.++++ |||.|++.++.
T Consensus 127 ~-~l~~~~~sfD~V~~~~~l~h~~d~~~~l~~~~~~Lk-pgG~l~~~~~~ 174 (282)
T d2o57a1 127 L-EIPCEDNSYDFIWSQDAFLHSPDKLKVFQECARVLK-PRGVMAITDPM 174 (282)
T ss_dssp T-SCSSCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEE-EEEEEEEEEEE
T ss_pred c-cccccccccchhhccchhhhccCHHHHHHHHHHhcC-CCcEEEEEEee
Confidence 2 345566899999999999999876544444444442 89999998763
|
| >d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Putative methyltransferase CAC2371 species: Clostridium acetobutylicum [TaxId: 1488]
Probab=99.31 E-value=3.4e-12 Score=116.97 Aligned_cols=117 Identities=14% Similarity=0.098 Sum_probs=82.9
Q ss_pred HHHHHHHHHHHHHHCCCCCCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCC-CCCceeechh
Q 015771 12 LLFTLLVTESFARRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK-DLPLIHSYNS 90 (400)
Q Consensus 12 Ya~~~~vL~el~~rlp~~~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~-~~~~~~~~~~ 90 (400)
|.....-+.++.... ...+.+|||+|||+|..+..+++. ..+|++||.|++|++.|++.+.... ++.++..
T Consensus 20 y~~~~~~~~~~~~~~-~~~~~~vLDiGCG~G~~~~~l~~~----g~~v~GvD~S~~ml~~A~~~~~~~~~~v~~~~~--- 91 (246)
T d1y8ca_ 20 YKKWSDFIIEKCVEN-NLVFDDYLDLACGTGNLTENLCPK----FKNTWAVDLSQEMLSEAENKFRSQGLKPRLACQ--- 91 (246)
T ss_dssp HHHHHHHHHHHHHTT-TCCTTEEEEETCTTSTTHHHHGGG----SSEEEEECSCHHHHHHHHHHHHHTTCCCEEECC---
T ss_pred HHHHHHHHHHHHHHh-CCCCCeEEEEeCcCCHHHHHHHHh----CCccEeeccchhhhhhccccccccCccceeecc---
Confidence 444333344433332 345689999999999998888753 3589999999999999998775432 3333322
Q ss_pred hhHhhhhcccCCCcccEEeec-ccccCCCCHHHHHHHHHHHHhc--cCCeEEE
Q 015771 91 IQALNKDISKSEREHDLVIAS-YVLGEVPSLQDRITIVRQLWDL--TRDVLVL 140 (400)
Q Consensus 91 ~~~l~~~l~~~~~~~DLVias-~~L~eL~~~~~r~~~i~~Lw~~--~gG~LVl 140 (400)
++. .++ ..++||+|+|. ++++++.+..++..+++++.+. |||.||+
T Consensus 92 --d~~-~~~-~~~~fD~i~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~~i~ 140 (246)
T d1y8ca_ 92 --DIS-NLN-INRKFDLITCCLDSTNYIIDSDDLKKYFKAVSNHLKEGGVFIF 140 (246)
T ss_dssp --CGG-GCC-CSCCEEEEEECTTGGGGCCSHHHHHHHHHHHHTTEEEEEEEEE
T ss_pred --chh-hhc-ccccccccceeeeeeeccCCHHHHHHHHHHHHHhCCCCeEEEE
Confidence 222 222 34689999976 6889998888999999999875 8998886
|
| >d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TehB-like domain: Putative methyltransferase TehB species: Salmonella typhimurium [TaxId: 90371]
Probab=99.30 E-value=3.1e-12 Score=113.63 Aligned_cols=106 Identities=15% Similarity=0.204 Sum_probs=78.4
Q ss_pred CCCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCCCCceeechhhhHhhhhcccCCCcccEE
Q 015771 29 FSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDISKSEREHDLV 108 (400)
Q Consensus 29 ~~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~~~~~~~~~~~~~l~~~l~~~~~~~DLV 108 (400)
..|.+|||+|||+|..+..+++ ...+|++||+|+.|++.++...... ++..+... ..++.. +. ..++||+|
T Consensus 29 ~~~grvLDiGcG~G~~~~~la~----~g~~v~gvD~s~~~l~~a~~~~~~~-~~~~~~~~--~~d~~~-~~-~~~~fD~I 99 (198)
T d2i6ga1 29 VAPGRTLDLGCGNGRNSLYLAA----NGYDVTAWDKNPASMANLERIKAAE-GLDNLQTD--LVDLNT-LT-FDGEYDFI 99 (198)
T ss_dssp SCSCEEEEETCTTSHHHHHHHH----TTCEEEEEESCHHHHHHHHHHHHHT-TCTTEEEE--ECCTTT-CC-CCCCEEEE
T ss_pred CCCCcEEEECCCCCHHHHHHHH----HhhhhccccCcHHHHHHHHHHhhhc-cccchhhh--heeccc-cc-ccccccEE
Confidence 4668999999999999888775 3458999999999999999887643 23322211 112221 12 35789999
Q ss_pred eecccccCCCCHHHHHHHHHHHHhc--cCCeEEEEcCC
Q 015771 109 IASYVLGEVPSLQDRITIVRQLWDL--TRDVLVLVEPG 144 (400)
Q Consensus 109 ias~~L~eL~~~~~r~~~i~~Lw~~--~gG~LVlVE~G 144 (400)
++.+++++++ ..++..+++++.+. +||+++++...
T Consensus 100 ~~~~~~~~~~-~~~~~~~l~~~~~~L~pgG~~~~~~~~ 136 (198)
T d2i6ga1 100 LSTVVMMFLE-AQTIPGLIANMQRCTKPGGYNLIVAAM 136 (198)
T ss_dssp EEESCGGGSC-TTHHHHHHHHHHHTEEEEEEEEEEEEB
T ss_pred EEeeeeecCC-HHHHHHHHHHHHHHcCCCcEEEEEEec
Confidence 9999999997 45677788888764 89999998764
|
| >d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810) species: Leishmania major [TaxId: 5664]
Probab=99.29 E-value=6.8e-12 Score=116.32 Aligned_cols=113 Identities=19% Similarity=0.274 Sum_probs=81.2
Q ss_pred HHHHCCCCCCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCCCCceeechhhhHhhhhcccC
Q 015771 22 FARRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDISKS 101 (400)
Q Consensus 22 l~~rlp~~~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~~~~~~~~~~~~~l~~~l~~~ 101 (400)
+.+.++.-.+.+|||+|||+|..+..++... ..+|++||+|+.|++.|++.+.......+... ++. .++..
T Consensus 85 fl~~l~~~~~~~vLD~GcG~G~~t~~ll~~~---~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~-----d~~-~~~~~ 155 (254)
T d1xtpa_ 85 FIASLPGHGTSRALDCGAGIGRITKNLLTKL---YATTDLLEPVKHMLEEAKRELAGMPVGKFILA-----SME-TATLP 155 (254)
T ss_dssp HHHTSTTCCCSEEEEETCTTTHHHHHTHHHH---CSEEEEEESCHHHHHHHHHHTTTSSEEEEEES-----CGG-GCCCC
T ss_pred HHhhCCCCCCCeEEEecccCChhhHHHHhhc---CceEEEEcCCHHHHHhhhccccccccceeEEc-----ccc-ccccC
Confidence 3344555566899999999999887655432 24799999999999999988765432222221 222 23445
Q ss_pred CCcccEEeecccccCCCCHHHHHHHHHHHHhc--cCCeEEEEcCC
Q 015771 102 EREHDLVIASYVLGEVPSLQDRITIVRQLWDL--TRDVLVLVEPG 144 (400)
Q Consensus 102 ~~~~DLVias~~L~eL~~~~~r~~~i~~Lw~~--~gG~LVlVE~G 144 (400)
.++||+|++..+|++++ ..+...+++++.+. +||.|+|.|+-
T Consensus 156 ~~~fD~I~~~~vl~hl~-d~d~~~~l~~~~~~LkpgG~iii~e~~ 199 (254)
T d1xtpa_ 156 PNTYDLIVIQWTAIYLT-DADFVKFFKHCQQALTPNGYIFFKENC 199 (254)
T ss_dssp SSCEEEEEEESCGGGSC-HHHHHHHHHHHHHHEEEEEEEEEEEEB
T ss_pred CCccceEEeeccccccc-hhhhHHHHHHHHHhcCCCcEEEEEecC
Confidence 67899999999999997 44566677777663 89999998863
|
| >d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical methyltransferase TM1389 species: Thermotoga maritima [TaxId: 2336]
Probab=99.27 E-value=1.1e-11 Score=112.28 Aligned_cols=99 Identities=24% Similarity=0.338 Sum_probs=71.6
Q ss_pred CCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCCCCceeechhhhHhhhhcccCCCcccEEe
Q 015771 30 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDISKSEREHDLVI 109 (400)
Q Consensus 30 ~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~~~~~~~~~~~~~l~~~l~~~~~~~DLVi 109 (400)
++.+|||+|||+|..+..+++ ...+|+|||+|+.|++.|+...... .+.. +. ..++.+.++||+|+
T Consensus 42 ~~~~vLDiGcG~G~~~~~l~~----~~~~v~giD~s~~~l~~a~~~~~~~----~~~~-----~~-~~l~~~~~~fD~ii 107 (246)
T d2avna1 42 NPCRVLDLGGGTGKWSLFLQE----RGFEVVLVDPSKEMLEVAREKGVKN----VVEA-----KA-EDLPFPSGAFEAVL 107 (246)
T ss_dssp SCCEEEEETCTTCHHHHHHHT----TTCEEEEEESCHHHHHHHHHHTCSC----EEEC-----CT-TSCCSCTTCEEEEE
T ss_pred CCCEEEEECCCCchhcccccc----cceEEEEeecccccccccccccccc----cccc-----cc-ccccccccccccee
Confidence 457999999999999998884 3458999999999999999864321 1211 11 13455568999999
Q ss_pred ec-ccccCCCCHHHHHHHHHHHHhccCCeEEEEcC
Q 015771 110 AS-YVLGEVPSLQDRITIVRQLWDLTRDVLVLVEP 143 (400)
Q Consensus 110 as-~~L~eL~~~~~r~~~i~~Lw~~~gG~LVlVE~ 143 (400)
+. .+++++++...-.+-+.+++ ++||.+|+..+
T Consensus 108 ~~~~~~~~~~d~~~~l~~i~r~L-k~gG~~ii~~~ 141 (246)
T d2avna1 108 ALGDVLSYVENKDKAFSEIRRVL-VPDGLLIATVD 141 (246)
T ss_dssp ECSSHHHHCSCHHHHHHHHHHHE-EEEEEEEEEEE
T ss_pred eecchhhhhhhHHHHHHHHHhhc-CcCcEEEEEEC
Confidence 75 68999987765444444444 37999998764
|
| >d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: BC2162-like domain: Methyltransferase BC2162 species: Bacillus cereus [TaxId: 1396]
Probab=99.26 E-value=3.6e-12 Score=119.78 Aligned_cols=115 Identities=14% Similarity=0.233 Sum_probs=82.4
Q ss_pred HHHHHHHCC-CCCCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCC-CCCceeechhhhHhhh
Q 015771 19 TESFARRLP-GFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK-DLPLIHSYNSIQALNK 96 (400)
Q Consensus 19 L~el~~rlp-~~~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~-~~~~~~~~~~~~~l~~ 96 (400)
+..+...+. --+|.+|||+|||+|..+..+++.++ ...+|+++|.|+.|++.|++.+...+ ++.+.. .++.
T Consensus 15 l~~l~~~~~~~~~~~~ILDiGcG~G~~~~~la~~~~-~~~~v~giD~s~~~l~~a~~~~~~~~~~~~f~~-----~d~~- 87 (281)
T d2gh1a1 15 VSFLVNTVWKITKPVHIVDYGCGYGYLGLVLMPLLP-EGSKYTGIDSGETLLAEARELFRLLPYDSEFLE-----GDAT- 87 (281)
T ss_dssp HHHHHHTTSCCCSCCEEEEETCTTTHHHHHHTTTSC-TTCEEEEEECCHHHHHHHHHHHHSSSSEEEEEE-----SCTT-
T ss_pred HHHHHHHHhccCCcCEEEEecCcCCHHHHHHHHhCC-CCCEEEEEecchhHhhhhhcccccccccccccc-----cccc-
Confidence 444544332 23678999999999999988887776 34689999999999999999887542 111221 1222
Q ss_pred hcccCCCcccEEeecccccCCCCHHHHHHHHHHHHhc--cCCeEEEEcCC
Q 015771 97 DISKSEREHDLVIASYVLGEVPSLQDRITIVRQLWDL--TRDVLVLVEPG 144 (400)
Q Consensus 97 ~l~~~~~~~DLVias~~L~eL~~~~~r~~~i~~Lw~~--~gG~LVlVE~G 144 (400)
.++. .++||+|++.++|++++++.. +++++.+. |||.|+++|+.
T Consensus 88 ~~~~-~~~fD~v~~~~~l~~~~d~~~---~l~~~~~~LkpgG~lii~~~~ 133 (281)
T d2gh1a1 88 EIEL-NDKYDIAICHAFLLHMTTPET---MLQKMIHSVKKGGKIICFEPH 133 (281)
T ss_dssp TCCC-SSCEEEEEEESCGGGCSSHHH---HHHHHHHTEEEEEEEEEEECC
T ss_pred cccc-cCCceEEEEehhhhcCCCHHH---HHHHHHHHcCcCcEEEEEECC
Confidence 2332 457999999999999987654 45555543 89999999974
|
| >d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical Protein YjhP domain: Hypothetical Protein YjhP species: Escherichia coli [TaxId: 562]
Probab=99.25 E-value=4.7e-12 Score=116.14 Aligned_cols=117 Identities=11% Similarity=0.086 Sum_probs=79.3
Q ss_pred HHHHHHCCCCCCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCCCCceeechhhhHhhhhcc
Q 015771 20 ESFARRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDIS 99 (400)
Q Consensus 20 ~el~~rlp~~~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~~~~~~~~~~~~~l~~~l~ 99 (400)
..|...+.-..+.+|||||||+|..+..+++..+ .++++||+|+.|++.|++.....+--..+... ..+... +
T Consensus 23 ~~l~~~~~l~pg~~VLDiGCG~G~~~~~la~~~~---~~v~GvD~s~~~~~~ar~~~~~~gl~~~v~~~--~~d~~~-~- 95 (245)
T d1nkva_ 23 ATLGRVLRMKPGTRILDLGSGSGEMLCTWARDHG---ITGTGIDMSSLFTAQAKRRAEELGVSERVHFI--HNDAAG-Y- 95 (245)
T ss_dssp HHHHHHTCCCTTCEEEEETCTTCHHHHHHHHHTC---CEEEEEESCHHHHHHHHHHHHHTTCTTTEEEE--ESCCTT-C-
T ss_pred HHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHhcC---CEEEEEecccchhhHHHHHHHHhhccccchhh--hhHHhh-c-
Confidence 3344444333347999999999999888877654 58999999999999999987544211111110 112221 2
Q ss_pred cCCCcccEEeecccccCCCCHHHHHHHHHHHHhccCCeEEEEcCC
Q 015771 100 KSEREHDLVIASYVLGEVPSLQDRITIVRQLWDLTRDVLVLVEPG 144 (400)
Q Consensus 100 ~~~~~~DLVias~~L~eL~~~~~r~~~i~~Lw~~~gG~LVlVE~G 144 (400)
...++||+|++..+++++++.......+.++++ |||.+++.+++
T Consensus 96 ~~~~~fD~v~~~~~~~~~~d~~~~l~~~~r~Lk-PGG~l~i~~~~ 139 (245)
T d1nkva_ 96 VANEKCDVAACVGATWIAGGFAGAEELLAQSLK-PGGIMLIGEPY 139 (245)
T ss_dssp CCSSCEEEEEEESCGGGTSSSHHHHHHHTTSEE-EEEEEEEEEEE
T ss_pred cccCceeEEEEEehhhccCCHHHHHHHHHHHcC-cCcEEEEEecc
Confidence 245789999999999999876544444444442 89999998764
|
| >d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Possible histamine N-methyltransferase TM1293 species: Thermotoga maritima [TaxId: 2336]
Probab=99.24 E-value=1.2e-11 Score=110.11 Aligned_cols=94 Identities=14% Similarity=0.181 Sum_probs=68.7
Q ss_pred CeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCCCCceeechhhhHhhhhcccCCCcccEEeec
Q 015771 32 AKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDISKSEREHDLVIAS 111 (400)
Q Consensus 32 ~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~~~~~~~~~~~~~l~~~l~~~~~~~DLVias 111 (400)
.+|||+|||+|..+..+. ++++||+|+.|++.|++. ++.++... . ..++...++||+|++.
T Consensus 38 ~~vLDiGcG~G~~~~~~~--------~~~giD~s~~~~~~a~~~-----~~~~~~~d-----~-~~l~~~~~~fD~I~~~ 98 (208)
T d1vlma_ 38 GRGVEIGVGTGRFAVPLK--------IKIGVEPSERMAEIARKR-----GVFVLKGT-----A-ENLPLKDESFDFALMV 98 (208)
T ss_dssp SCEEEETCTTSTTHHHHT--------CCEEEESCHHHHHHHHHT-----TCEEEECB-----T-TBCCSCTTCEEEEEEE
T ss_pred CeEEEECCCCcccccccc--------eEEEEeCChhhccccccc-----cccccccc-----c-cccccccccccccccc
Confidence 589999999998776553 468999999999999873 23333221 2 1344556789999999
Q ss_pred ccccCCCCHHHHHHHHHHHHhccCCeEEEEcCCC
Q 015771 112 YVLGEVPSLQDRITIVRQLWDLTRDVLVLVEPGT 145 (400)
Q Consensus 112 ~~L~eL~~~~~r~~~i~~Lw~~~gG~LVlVE~Gt 145 (400)
++|+++++...-..-+.+++ +|||.|++.++..
T Consensus 99 ~~l~h~~d~~~~l~~~~~~L-~pgG~l~i~~~~~ 131 (208)
T d1vlma_ 99 TTICFVDDPERALKEAYRIL-KKGGYLIVGIVDR 131 (208)
T ss_dssp SCGGGSSCHHHHHHHHHHHE-EEEEEEEEEEECS
T ss_pred cccccccccccchhhhhhcC-CCCceEEEEecCC
Confidence 99999987665444444444 3799999998754
|
| >d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Adrenal gland protein AD-003 (C9orf32) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.21 E-value=8.2e-12 Score=112.84 Aligned_cols=111 Identities=16% Similarity=0.248 Sum_probs=77.8
Q ss_pred CCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCCCCceeechhhhHhhhhcccCCCcccEEe
Q 015771 30 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDISKSEREHDLVI 109 (400)
Q Consensus 30 ~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~~~~~~~~~~~~~l~~~l~~~~~~~DLVi 109 (400)
...+|||+|||+|..+..++.. ...+|++||+|+.|++.|++.+.... .+.+. ....++. .++...++||+|+
T Consensus 60 ~~~~vLDiGcG~G~~~~~l~~~---~~~~v~~vD~s~~~l~~ak~~~~~~~-~~~~~--f~~~d~~-~~~~~~~~fD~I~ 132 (222)
T d2ex4a1 60 GTSCALDCGAGIGRITKRLLLP---LFREVDMVDITEDFLVQAKTYLGEEG-KRVRN--YFCCGLQ-DFTPEPDSYDVIW 132 (222)
T ss_dssp CCSEEEEETCTTTHHHHHTTTT---TCSEEEEEESCHHHHHHHHHHTGGGG-GGEEE--EEECCGG-GCCCCSSCEEEEE
T ss_pred CCCEEEEeccCCCHhhHHHHHh---cCCEEEEeecCHHHhhcccccccccc-ccccc--ccccccc-ccccccccccccc
Confidence 3478999999999988765432 33589999999999999999876432 11111 0011222 2344567999999
Q ss_pred ecccccCCCCHHHHHHHHHHHHhc--cCCeEEEEcCCCCCc
Q 015771 110 ASYVLGEVPSLQDRITIVRQLWDL--TRDVLVLVEPGTPQG 148 (400)
Q Consensus 110 as~~L~eL~~~~~r~~~i~~Lw~~--~gG~LVlVE~Gtp~G 148 (400)
+.++|+++++ .++..+++++.+. +||.++++++..+.+
T Consensus 133 ~~~~l~h~~~-~~~~~~l~~i~~~Lk~~G~~~i~~~~~~~~ 172 (222)
T d2ex4a1 133 IQWVIGHLTD-QHLAEFLRRCKGSLRPNGIIVIKDNMAQEG 172 (222)
T ss_dssp EESCGGGSCH-HHHHHHHHHHHHHEEEEEEEEEEEEEBSSS
T ss_pred cccccccchh-hhhhhHHHHHHHhcCCcceEEEEEcccccc
Confidence 9999999974 4555666666553 799999998754443
|
| >d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein ECA1738 species: Erwinia carotovora [TaxId: 554]
Probab=99.21 E-value=1.7e-11 Score=110.97 Aligned_cols=101 Identities=24% Similarity=0.351 Sum_probs=74.2
Q ss_pred CCCCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCCCCceeechhhhHhhhhcccCCCcccE
Q 015771 28 GFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDISKSEREHDL 107 (400)
Q Consensus 28 ~~~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~~~~~~~~~~~~~l~~~l~~~~~~~DL 107 (400)
.+++.+|||+|||+|..+..+++. ..+|++||+|++|++.|+..+.. ++.++... +. .++ .+++||+
T Consensus 18 ~~~~~~VLDiGcG~G~~~~~l~~~----g~~v~giD~s~~~i~~a~~~~~~--~~~~~~~~-----~~-~~~-~~~~fD~ 84 (225)
T d2p7ia1 18 FFRPGNLLELGSFKGDFTSRLQEH----FNDITCVEASEEAISHAQGRLKD--GITYIHSR-----FE-DAQ-LPRRYDN 84 (225)
T ss_dssp GCCSSCEEEESCTTSHHHHHHTTT----CSCEEEEESCHHHHHHHHHHSCS--CEEEEESC-----GG-GCC-CSSCEEE
T ss_pred hCCCCcEEEEeCCCcHHHHHHHHc----CCeEEEEeCcHHHhhhhhccccc--cccccccc-----cc-ccc-ccccccc
Confidence 467789999999999999887743 35799999999999999987653 33333321 22 222 3578999
Q ss_pred EeecccccCCCCHHHHHHHHHHHH-h--ccCCeEEEEcCC
Q 015771 108 VIASYVLGEVPSLQDRITIVRQLW-D--LTRDVLVLVEPG 144 (400)
Q Consensus 108 Vias~~L~eL~~~~~r~~~i~~Lw-~--~~gG~LVlVE~G 144 (400)
|++.++|++++++.. ++.++. + ++||.+++.-|.
T Consensus 85 I~~~~vleh~~d~~~---~l~~i~~~~Lk~gG~l~i~~pn 121 (225)
T d2p7ia1 85 IVLTHVLEHIDDPVA---LLKRINDDWLAEGGRLFLVCPN 121 (225)
T ss_dssp EEEESCGGGCSSHHH---HHHHHHHTTEEEEEEEEEEEEC
T ss_pred ccccceeEecCCHHH---HHHHHHHHhcCCCceEEEEeCC
Confidence 999999999987654 444444 2 389999987664
|
| >d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Pseudomonas syringae [TaxId: 317]
Probab=99.17 E-value=2e-11 Score=106.51 Aligned_cols=110 Identities=15% Similarity=0.006 Sum_probs=74.4
Q ss_pred CCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCCCC----ce-eechhhhHhhhh---cc-c
Q 015771 30 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLP----LI-HSYNSIQALNKD---IS-K 100 (400)
Q Consensus 30 ~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~~~----~~-~~~~~~~~l~~~---l~-~ 100 (400)
.+.+|||+|||+|..++.+++. ..+|++||+|+.|++.|++.++...... .. ........+..+ ++ .
T Consensus 20 ~~~rvLd~GCG~G~~a~~la~~----G~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 95 (201)
T d1pjza_ 20 PGARVLVPLCGKSQDMSWLSGQ----GYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFALTAR 95 (201)
T ss_dssp TTCEEEETTTCCSHHHHHHHHH----CCEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCSSSTHH
T ss_pred CCCEEEEecCcCCHHHHHHHHc----CCceEeecccHHHHHHHHHHhccccchhhhhhhhhccccccceecccccccccc
Confidence 4579999999999988887753 4689999999999999999886532100 00 000000000000 11 1
Q ss_pred CCCcccEEeecccccCCCCHHHHHHHHHHHHhc--cCCeEEEEcCC
Q 015771 101 SEREHDLVIASYVLGEVPSLQDRITIVRQLWDL--TRDVLVLVEPG 144 (400)
Q Consensus 101 ~~~~~DLVias~~L~eL~~~~~r~~~i~~Lw~~--~gG~LVlVE~G 144 (400)
....||+|+++++++.++ ...+...++++.+. +||.++|+...
T Consensus 96 ~~~~~D~i~~~~~l~~l~-~~~~~~~~~~i~~~LkpgG~l~l~~~~ 140 (201)
T d1pjza_ 96 DIGHCAAFYDRAAMIALP-ADMRERYVQHLEALMPQACSGLLITLE 140 (201)
T ss_dssp HHHSEEEEEEESCGGGSC-HHHHHHHHHHHHHHSCSEEEEEEEEES
T ss_pred cccceeEEEEEeeeEecc-hhhhHHHHHHHHHhcCCCcEEEEEEcc
Confidence 235799999999999997 56677777777664 79998877643
|
| >d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap (Guanine N-7) methyltransferase domain: mRNA cap (Guanine N-7) methyltransferase species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]
Probab=99.12 E-value=8.4e-11 Score=108.15 Aligned_cols=108 Identities=13% Similarity=0.117 Sum_probs=73.9
Q ss_pred CCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCCCCceeechhhhHhhhhcccCCCcccEEee
Q 015771 31 PAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDISKSEREHDLVIA 110 (400)
Q Consensus 31 p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~~~~~~~~~~~~~l~~~l~~~~~~~DLVia 110 (400)
..+|||+|||+|..+..+.+. ...+|+|||+|+.|++.|+....+......+. ....+.........++||+|++
T Consensus 25 ~~~VLDlGCG~G~~~~~~~~~---~~~~v~GiD~S~~~l~~A~~r~~~~~~~~~v~--f~~~D~~~~~~~~~~~fD~V~~ 99 (252)
T d1ri5a_ 25 GDSVLDLGCGKGGDLLKYERA---GIGEYYGVDIAEVSINDARVRARNMKRRFKVF--FRAQDSYGRHMDLGKEFDVISS 99 (252)
T ss_dssp TCEEEEETCTTTTTHHHHHHH---TCSEEEEEESCHHHHHHHHHHHHTSCCSSEEE--EEESCTTTSCCCCSSCEEEEEE
T ss_pred cCEEEEecccCcHHHHHHHHc---CCCeEEEecCCHHHHHHHHHHHHhcCCCcceE--EEEcchhhhcccccccceEEEE
Confidence 479999999999877666643 23589999999999999998876543221111 0011221111123568999999
Q ss_pred cccccCCCC-HHHHHHHHHHHHhc--cCCeEEEEcC
Q 015771 111 SYVLGEVPS-LQDRITIVRQLWDL--TRDVLVLVEP 143 (400)
Q Consensus 111 s~~L~eL~~-~~~r~~~i~~Lw~~--~gG~LVlVE~ 143 (400)
.++++++.. .+....++.++.+. +||++|+..+
T Consensus 100 ~~~l~~~~~~~~~~~~~l~~i~~~Lk~gG~~i~~~~ 135 (252)
T d1ri5a_ 100 QFSFHYAFSTSESLDIAQRNIARHLRPGGYFIMTVP 135 (252)
T ss_dssp ESCGGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred cceeeecCCCHHHHHHHHHHHhceeCCCCEEEEEec
Confidence 999998743 44556677777764 8999998754
|
| >d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Carminomycin 4-O-methyltransferase species: Streptomyces peucetius [TaxId: 1950]
Probab=99.09 E-value=2.5e-10 Score=105.20 Aligned_cols=115 Identities=18% Similarity=0.206 Sum_probs=80.9
Q ss_pred HHHHHCCCCC-CCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCCCCceeechhhhHhhhhcc
Q 015771 21 SFARRLPGFS-PAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDIS 99 (400)
Q Consensus 21 el~~rlp~~~-p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~~~~~~~~~~~~~l~~~l~ 99 (400)
.+...++ |. ..+|||||||+|..+.++++.+|. .+++++|. ++|++.++..+........+... ..++. .
T Consensus 71 ~~~~~~d-~~~~~~VLDvGcG~G~~~~~la~~~p~--~~~~~~D~-~~~~~~a~~~~~~~~~~~rv~~~--~~D~~---~ 141 (253)
T d1tw3a2 71 APAAAYD-WTNVRHVLDVGGGKGGFAAAIARRAPH--VSATVLEM-AGTVDTARSYLKDEGLSDRVDVV--EGDFF---E 141 (253)
T ss_dssp HHHHHSC-CTTCSEEEEETCTTSHHHHHHHHHCTT--CEEEEEEC-TTHHHHHHHHHHHTTCTTTEEEE--ECCTT---S
T ss_pred HHHhhcC-CccCCEEEEeCCCCCHHHHHHHHhcce--eEEEEccC-HHHHHHHHHHHHHhhcccchhhc--cccch---h
Confidence 3444443 43 479999999999999999998874 57899998 57888888877654221222111 01121 1
Q ss_pred cCCCcccEEeecccccCCCCHHHHHHHHHHHHhc--cCCeEEEEcCCC
Q 015771 100 KSEREHDLVIASYVLGEVPSLQDRITIVRQLWDL--TRDVLVLVEPGT 145 (400)
Q Consensus 100 ~~~~~~DLVias~~L~eL~~~~~r~~~i~~Lw~~--~gG~LVlVE~Gt 145 (400)
....+||+|+++++|++++ .++...+++++.+. |||.|+|+|...
T Consensus 142 ~~~~~~D~v~~~~vlh~~~-d~~~~~~L~~~~~~LkPGG~l~i~e~~~ 188 (253)
T d1tw3a2 142 PLPRKADAIILSFVLLNWP-DHDAVRILTRCAEALEPGGRILIHERDD 188 (253)
T ss_dssp CCSSCEEEEEEESCGGGSC-HHHHHHHHHHHHHTEEEEEEEEEEECCB
T ss_pred hcccchhheeeccccccCC-chhhHHHHHHHHHhcCCCcEEEEEeccC
Confidence 1235799999999999997 55667788888775 899999998743
|
| >d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA methyltransferase RlmA domain: rRNA methyltransferase RlmA species: Escherichia coli [TaxId: 562]
Probab=99.06 E-value=3e-10 Score=105.73 Aligned_cols=108 Identities=17% Similarity=0.242 Sum_probs=78.8
Q ss_pred HHHHHHHHCCCCCCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCCCCceeechhhhHhhhh
Q 015771 18 VTESFARRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKD 97 (400)
Q Consensus 18 vL~el~~rlp~~~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~~~~~~~~~~~~~l~~~ 97 (400)
+...+..+++. ++.+|||+|||+|..+.++++.+++ .++++||+|+.|++.|++...+ +.++.. +.. .
T Consensus 73 ~~~~l~~~~~~-~~~~iLDiGcG~G~~~~~l~~~~~~--~~~~giD~s~~~~~~a~~~~~~---~~~~~~-----d~~-~ 140 (268)
T d1p91a_ 73 IVAQLRERLDD-KATAVLDIGCGEGYYTHAFADALPE--ITTFGLDVSKVAIKAAAKRYPQ---VTFCVA-----SSH-R 140 (268)
T ss_dssp HHHHHHHHSCT-TCCEEEEETCTTSTTHHHHHHTCTT--SEEEEEESCHHHHHHHHHHCTT---SEEEEC-----CTT-S
T ss_pred HHHHHHHhcCC-CCCEEEEeCCCCcHHHHHHHHHCCC--CEEEEecchHhhhhhhhccccc---ccceee-----ehh-h
Confidence 44555666554 6789999999999999998887753 5899999999999999876542 322221 122 3
Q ss_pred cccCCCcccEEeecccccCCCCHHHHHHHHHHHHhccCCeEEEEcCCC
Q 015771 98 ISKSEREHDLVIASYVLGEVPSLQDRITIVRQLWDLTRDVLVLVEPGT 145 (400)
Q Consensus 98 l~~~~~~~DLVias~~L~eL~~~~~r~~~i~~Lw~~~gG~LVlVE~Gt 145 (400)
++...+.||+|++.+++..+. -+.+++ +|||.|+++.|+.
T Consensus 141 l~~~~~sfD~v~~~~~~~~~~-------e~~rvL-kpgG~l~~~~p~~ 180 (268)
T d1p91a_ 141 LPFSDTSMDAIIRIYAPCKAE-------ELARVV-KPGGWVITATPGP 180 (268)
T ss_dssp CSBCTTCEEEEEEESCCCCHH-------HHHHHE-EEEEEEEEEEECT
T ss_pred ccCCCCCEEEEeecCCHHHHH-------HHHHHh-CCCcEEEEEeeCC
Confidence 455678899999998877642 244455 3899999999865
|
| >d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.04 E-value=3e-10 Score=103.62 Aligned_cols=103 Identities=11% Similarity=0.036 Sum_probs=69.2
Q ss_pred CCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCCCCceeechhhhHhhhhcccCCCcccEEe
Q 015771 30 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDISKSEREHDLVI 109 (400)
Q Consensus 30 ~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~~~~~~~~~~~~~l~~~l~~~~~~~DLVi 109 (400)
.+.+|||+|||+|+.+..+++..+. ..|++||.|+.|++.++.++....++..+... ...........+|+++
T Consensus 74 pG~~VLDlGcGsG~~~~~la~~~~~--g~V~aVDiS~~~i~~a~~~a~~~~ni~~i~~d-----~~~~~~~~~~~~~v~~ 146 (230)
T d1g8sa_ 74 RDSKILYLGASAGTTPSHVADIADK--GIVYAIEYAPRIMRELLDACAERENIIPILGD-----ANKPQEYANIVEKVDV 146 (230)
T ss_dssp TTCEEEEESCCSSHHHHHHHHHTTT--SEEEEEESCHHHHHHHHHHTTTCTTEEEEECC-----TTCGGGGTTTCCCEEE
T ss_pred CCCEEEEeCEEcCHHHHHHHHhCCC--CEEEEEeCcHHHHHHHHHHHhhhcccceEEEe-----eccCcccccccceeEE
Confidence 3479999999999999999988753 58999999999999999987765543322211 1111111234577777
Q ss_pred ecccccCCCCHHHHHHHHHHHHh--ccCCeEEEEc
Q 015771 110 ASYVLGEVPSLQDRITIVRQLWD--LTRDVLVLVE 142 (400)
Q Consensus 110 as~~L~eL~~~~~r~~~i~~Lw~--~~gG~LVlVE 142 (400)
+.+.+.+.. +...++.++.+ ++||.++|+.
T Consensus 147 i~~~~~~~~---~~~~~l~~~~r~LKpgG~~~i~~ 178 (230)
T d1g8sa_ 147 IYEDVAQPN---QAEILIKNAKWFLKKGGYGMIAI 178 (230)
T ss_dssp EEECCCSTT---HHHHHHHHHHHHEEEEEEEEEEE
T ss_pred eeccccchH---HHHHHHHHHHHhcccCceEEEEe
Confidence 766666654 33344444433 3899999884
|
| >d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glycine N-methyltransferase domain: Glycine N-methyltransferase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.04 E-value=4.3e-10 Score=105.55 Aligned_cols=107 Identities=21% Similarity=0.238 Sum_probs=72.3
Q ss_pred CCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCCCC----ceeechhhhHhhhhcccCCCcc
Q 015771 30 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLP----LIHSYNSIQALNKDISKSEREH 105 (400)
Q Consensus 30 ~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~~~----~~~~~~~~~~l~~~l~~~~~~~ 105 (400)
...+|||+|||+|..+..+++. ..+|++||.|+.|++.|++......... .......+..+...++ ...+|
T Consensus 56 ~~~~vLD~GcG~G~~~~~la~~----g~~v~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~f 130 (292)
T d1xvaa_ 56 GCHRVLDVACGTGVDSIMLVEE----GFSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKDVP-AGDGF 130 (292)
T ss_dssp TCCEEEESSCTTSHHHHHHHHT----TCEEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHHHHSC-CTTCE
T ss_pred CCCEEEEecCCCcHHHHHHHHc----CCeeeeccCchHHHHHHHHHHHhcccccccceeeeeeccccccccccC-CCCCc
Confidence 3479999999999999888752 3589999999999999988765432110 0000011111222222 34689
Q ss_pred cEEeec-ccccCCCCH----HHHHHHHHHHHhc--cCCeEEEE
Q 015771 106 DLVIAS-YVLGEVPSL----QDRITIVRQLWDL--TRDVLVLV 141 (400)
Q Consensus 106 DLVias-~~L~eL~~~----~~r~~~i~~Lw~~--~gG~LVlV 141 (400)
|+|++. ++|.++++. .++..+++++.+. |||.|||-
T Consensus 131 d~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~ 173 (292)
T d1xvaa_ 131 DAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVID 173 (292)
T ss_dssp EEEEECSSCGGGSCCTTSSSHHHHHHHHHHHHTEEEEEEEEEE
T ss_pred eEEEEecCchhhcCCcccChHHHHHHHHHHHHHcCcCcEEEEe
Confidence 999875 588888653 4677788888874 89998873
|
| >d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Methoxy mycolic acid synthase 4, Mma4 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.04 E-value=1.1e-09 Score=102.62 Aligned_cols=126 Identities=9% Similarity=0.063 Sum_probs=86.2
Q ss_pred HHHHHHHHHHCCCCCCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCCCCceeechhhhHhh
Q 015771 16 LLVTESFARRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALN 95 (400)
Q Consensus 16 ~~vL~el~~rlp~~~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~~~~~~~~~~~~~l~ 95 (400)
.+-++.+..++.--.+.+|||||||.|..+..+++..+ .+|++||.|+++++.|+++++..+....+... ..+.
T Consensus 38 ~~k~~~~~~~l~l~~g~~VLDiGCG~G~~a~~~a~~~g---~~v~gi~ls~~q~~~a~~~~~~~~l~~~~~~~--~~d~- 111 (280)
T d2fk8a1 38 YAKVDLNLDKLDLKPGMTLLDIGCGWGTTMRRAVERFD---VNVIGLTLSKNQHARCEQVLASIDTNRSRQVL--LQGW- 111 (280)
T ss_dssp HHHHHHHHTTSCCCTTCEEEEESCTTSHHHHHHHHHHC---CEEEEEESCHHHHHHHHHHHHTSCCSSCEEEE--ESCG-
T ss_pred HHHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHhCc---eeEEEecchHHHHHHHHHHHHhhccccchhhh--hhhh-
Confidence 34466677766433457999999999998877776665 48999999999999999998765422222111 0111
Q ss_pred hhcccCCCcccEEeecccccCCCCHHHHHHHHHHHHh--ccCCeEEEEcCCCCCchHH
Q 015771 96 KDISKSEREHDLVIASYVLGEVPSLQDRITIVRQLWD--LTRDVLVLVEPGTPQGSSI 151 (400)
Q Consensus 96 ~~l~~~~~~~DLVias~~L~eL~~~~~r~~~i~~Lw~--~~gG~LVlVE~Gtp~Gf~~ 151 (400)
....++||.|++..++.+++. .....+++++.+ +|||.++|-...+...+..
T Consensus 112 ---~~~~~~fD~i~si~~~eh~~~-~~~~~~f~~i~~~LkpgG~~~i~~i~~~~~~~~ 165 (280)
T d2fk8a1 112 ---EDFAEPVDRIVSIEAFEHFGH-ENYDDFFKRCFNIMPADGRMTVQSSVSYHPYEM 165 (280)
T ss_dssp ---GGCCCCCSEEEEESCGGGTCG-GGHHHHHHHHHHHSCTTCEEEEEEEECCCHHHH
T ss_pred ---hhhccchhhhhHhhHHHHhhh-hhHHHHHHHHHhccCCCceEEEEEeeccCcchh
Confidence 123468999999999999963 333445555544 3899999876655555543
|
| >d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Aclacinomycin-10-hydroxylase RdmB species: Streptomyces purpurascens [TaxId: 1924]
Probab=98.99 E-value=1.5e-09 Score=100.21 Aligned_cols=109 Identities=20% Similarity=0.204 Sum_probs=78.6
Q ss_pred CCCC-CeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCCCCceeechhhhHhhhhcccCCCccc
Q 015771 28 GFSP-AKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDISKSEREHD 106 (400)
Q Consensus 28 ~~~p-~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~~~~~~~~~~~~~l~~~l~~~~~~~D 106 (400)
+|.+ .+|||||||+|..+.++++.+|. .+++++|. +++++.++..+........+... ..+.. ......||
T Consensus 78 d~~~~~~vlDvG~G~G~~~~~l~~~~P~--~~~~~~Dl-p~~~~~a~~~~~~~~~~~ri~~~--~~d~~---~~~p~~~D 149 (256)
T d1qzza2 78 DWSAVRHVLDVGGGNGGMLAAIALRAPH--LRGTLVEL-AGPAERARRRFADAGLADRVTVA--EGDFF---KPLPVTAD 149 (256)
T ss_dssp CCTTCCEEEEETCTTSHHHHHHHHHCTT--CEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEE--ECCTT---SCCSCCEE
T ss_pred CCccCCEEEEECCCCCHHHHHHHHhhcC--cEEEEecC-hHHHHHHHHHHhhcCCcceeeee--eeecc---ccccccch
Confidence 3544 68999999999999999999974 58999997 78888888877643322222110 01111 11234699
Q ss_pred EEeecccccCCCCHHHHHHHHHHHHhc--cCCeEEEEcCCC
Q 015771 107 LVIASYVLGEVPSLQDRITIVRQLWDL--TRDVLVLVEPGT 145 (400)
Q Consensus 107 LVias~~L~eL~~~~~r~~~i~~Lw~~--~gG~LVlVE~Gt 145 (400)
+|++.++|++++ .++...+++++.+. |||.|+|+|.-.
T Consensus 150 ~v~~~~vLh~~~-d~~~~~lL~~i~~~LkpgG~llI~d~~~ 189 (256)
T d1qzza2 150 VVLLSFVLLNWS-DEDALTILRGCVRALEPGGRLLVLDRAD 189 (256)
T ss_dssp EEEEESCGGGSC-HHHHHHHHHHHHHHEEEEEEEEEEECCH
T ss_pred hhhccccccccC-cHHHHHHHHHHHhhcCCcceeEEEEecc
Confidence 999999999996 56667778888764 899999999743
|
| >d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.96 E-value=1e-09 Score=99.36 Aligned_cols=109 Identities=13% Similarity=-0.031 Sum_probs=75.5
Q ss_pred CCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCCC------C---ce-----eechhhhHhh
Q 015771 30 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDL------P---LI-----HSYNSIQALN 95 (400)
Q Consensus 30 ~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~~------~---~~-----~~~~~~~~l~ 95 (400)
.+.+|||+|||.|..+..+++ ...+|++||.|+.|++.+++........ . .. .......++.
T Consensus 45 ~~~rvLd~GCG~G~~a~~LA~----~G~~V~gvD~S~~ai~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~ 120 (229)
T d2bzga1 45 SGLRVFFPLCGKAVEMKWFAD----RGHSVVGVEISELGIQEFFTEQNLSYSEEPITEIPGTKVFKSSSGNISLYCCSIF 120 (229)
T ss_dssp CSCEEEETTCTTCTHHHHHHH----TTCEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCGG
T ss_pred CCCEEEEeCCCCcHHHHHHHh----CCCcEEEEeCCHHHHHHHHHHhhccccccchhcccccceeeecCCcEEEEEcchh
Confidence 457999999999998888774 4568999999999999998876532100 0 00 0000001111
Q ss_pred hhcccCCCcccEEeecccccCCCCHHHHHHHHHHHHhc--cCCeEEEEcC
Q 015771 96 KDISKSEREHDLVIASYVLGEVPSLQDRITIVRQLWDL--TRDVLVLVEP 143 (400)
Q Consensus 96 ~~l~~~~~~~DLVias~~L~eL~~~~~r~~~i~~Lw~~--~gG~LVlVE~ 143 (400)
...+.....||+|+...+|++++ +..|..+++++.+. |||.++|+-.
T Consensus 121 ~l~~~~~~~fd~i~~~~~l~~~~-~~~r~~~~~~~~~~LkpgG~~~l~~~ 169 (229)
T d2bzga1 121 DLPRTNIGKFDMIWDRGALVAIN-PGDRKCYADTMFSLLGKKFQYLLCVL 169 (229)
T ss_dssp GGGGSCCCCEEEEEESSSTTTSC-GGGHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred hccccccCceeEEEEEEEEEecc-chhhHHHHHHHHhhcCCcceEEEEEc
Confidence 11123456899999999999996 67788888888775 8999887754
|
| >d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein MJ0882 domain: Hypothetical protein MJ0882 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=98.94 E-value=1.4e-09 Score=96.06 Aligned_cols=109 Identities=13% Similarity=0.130 Sum_probs=71.9
Q ss_pred HHHCCCCCCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCC--CCCCceeechhhhHhhhhccc
Q 015771 23 ARRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGP--KDLPLIHSYNSIQALNKDISK 100 (400)
Q Consensus 23 ~~rlp~~~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~--~~~~~~~~~~~~~~l~~~l~~ 100 (400)
.+.++...+.+|||+|||+|..+.+++... .+++++|.|+.|++.++..++.. .+.. +... ..++... .
T Consensus 45 i~~l~~~~~~~VLDiGcG~G~~~~~la~~~----~~v~~iD~s~~~i~~a~~n~~~~~l~~~~-i~~~--~~d~~~~--~ 115 (194)
T d1dusa_ 45 VENVVVDKDDDILDLGCGYGVIGIALADEV----KSTTMADINRRAIKLAKENIKLNNLDNYD-IRVV--HSDLYEN--V 115 (194)
T ss_dssp HHHCCCCTTCEEEEETCTTSHHHHHHGGGS----SEEEEEESCHHHHHHHHHHHHHTTCTTSC-EEEE--ECSTTTT--C
T ss_pred HHhCCcCCCCeEEEEeecCChhHHHHHhhc----cccceeeeccccchhHHHHHHHhCCccce-EEEE--Ecchhhh--h
Confidence 345555667899999999999998887543 47999999999999999877532 1211 1110 1122222 2
Q ss_pred CCCcccEEeecccccCCCCHHHHHHHHHHHHhc--cCCeEEEEc
Q 015771 101 SEREHDLVIASYVLGEVPSLQDRITIVRQLWDL--TRDVLVLVE 142 (400)
Q Consensus 101 ~~~~~DLVias~~L~eL~~~~~r~~~i~~Lw~~--~gG~LVlVE 142 (400)
..++||+|++...++... .....+++.+.+. +||.|+++.
T Consensus 116 ~~~~fD~Ii~~~p~~~~~--~~~~~~l~~~~~~LkpgG~l~i~~ 157 (194)
T d1dusa_ 116 KDRKYNKIITNPPIRAGK--EVLHRIIEEGKELLKDNGEIWVVI 157 (194)
T ss_dssp TTSCEEEEEECCCSTTCH--HHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ccCCceEEEEcccEEecc--hhhhhHHHHHHHhcCcCcEEEEEE
Confidence 456899999988776542 2233455555443 799887764
|
| >d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Phenylethanolamine N-methyltransferase, PNMTase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.93 E-value=6.9e-10 Score=102.87 Aligned_cols=114 Identities=12% Similarity=0.123 Sum_probs=74.0
Q ss_pred CCCCCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCC-CCceeechhh--------------
Q 015771 27 PGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKD-LPLIHSYNSI-------------- 91 (400)
Q Consensus 27 p~~~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~-~~~~~~~~~~-------------- 91 (400)
...++.+|||+|||||......+.. ...+|+++|.|+.|++.+++.+..... ..+.+.....
T Consensus 51 g~~~g~~vLDiGcG~g~~~~~~~~~---~~~~v~~~D~S~~~i~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~ 127 (263)
T d2g72a1 51 GEVSGRTLIDIGSGPTVYQLLSACS---HFEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKE 127 (263)
T ss_dssp SCSCCSEEEEETCTTCCGGGTTGGG---GCSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHH
T ss_pred CCCCCcEEEEeccCCCHHHHHHhcc---cCCeEEEEeCCHHHHHHHHHHHhcCcccccchhhhhhhhhhccccchhhhhH
Confidence 3567789999999999654322211 235899999999999999988765321 1100000000
Q ss_pred ------------hHhhh-----hcccCCCcccEEeecccccCCC-CHHHHHHHHHHHHhc--cCCeEEEEcC
Q 015771 92 ------------QALNK-----DISKSEREHDLVIASYVLGEVP-SLQDRITIVRQLWDL--TRDVLVLVEP 143 (400)
Q Consensus 92 ------------~~l~~-----~l~~~~~~~DLVias~~L~eL~-~~~~r~~~i~~Lw~~--~gG~LVlVE~ 143 (400)
.++.. ..+...+.||+|++.++|+.++ +..+-..+++++.+. |||+||++..
T Consensus 128 ~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~~~~~LkPGG~li~~~~ 199 (263)
T d2g72a1 128 RQLRARVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLLIGA 199 (263)
T ss_dssp HHHHHHEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred HHhhhhhhccccccccCCCccccCCcCcCccCeeeeHHHHHHHccCHHHHHHHHHHHHHHcCCCCEEEEecc
Confidence 00100 0112245799999999999985 344567788888875 8999998864
|
| >d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ribosomal protein L11 methyltransferase PrmA domain: PrmA-like protein TTHA0656 (TT0836) species: Thermus thermophilus [TaxId: 274]
Probab=98.91 E-value=5.4e-10 Score=103.39 Aligned_cols=114 Identities=18% Similarity=0.161 Sum_probs=74.8
Q ss_pred HhHHHHHHHHHHHHHHCCCCCCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCC-CCCceeec
Q 015771 10 ECLLFTLLVTESFARRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK-DLPLIHSY 88 (400)
Q Consensus 10 ~~Ya~~~~vL~el~~rlp~~~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~-~~~~~~~~ 88 (400)
+.-.++.-+|..+.+.. ..+.+|||+|||+|..+.+++.. ..+|+++|.|+.|++.|+..++... +..++..
T Consensus 102 G~H~TT~l~l~~l~~~~--~~g~~VLDiGcGsG~l~i~aa~~----g~~V~gvDis~~av~~A~~na~~n~~~~~~~~~- 174 (254)
T d2nxca1 102 GHHETTRLALKALARHL--RPGDKVLDLGTGSGVLAIAAEKL----GGKALGVDIDPMVLPQAEANAKRNGVRPRFLEG- 174 (254)
T ss_dssp CCSHHHHHHHHHHHHHC--CTTCEEEEETCTTSHHHHHHHHT----TCEEEEEESCGGGHHHHHHHHHHTTCCCEEEES-
T ss_pred cccchhhHHHHHHHhhc--CccCEEEEcccchhHHHHHHHhc----CCEEEEEECChHHHHHHHHHHHHcCCceeEEec-
Confidence 34456666777777654 24579999999999998887742 3479999999999999998876432 1112221
Q ss_pred hhhhHhhhhcccCCCcccEEeecccccCCCCHHHHHHHHHHHHh--ccCCeEEEEc
Q 015771 89 NSIQALNKDISKSEREHDLVIASYVLGEVPSLQDRITIVRQLWD--LTRDVLVLVE 142 (400)
Q Consensus 89 ~~~~~l~~~l~~~~~~~DLVias~~L~eL~~~~~r~~~i~~Lw~--~~gG~LVlVE 142 (400)
++...+ ..++||+|+++...+.+ ..++..+.+ +|||.||+..
T Consensus 175 ----d~~~~~--~~~~fD~V~ani~~~~l------~~l~~~~~~~LkpGG~lilSg 218 (254)
T d2nxca1 175 ----SLEAAL--PFGPFDLLVANLYAELH------AALAPRYREALVPGGRALLTG 218 (254)
T ss_dssp ----CHHHHG--GGCCEEEEEEECCHHHH------HHHHHHHHHHEEEEEEEEEEE
T ss_pred ----cccccc--cccccchhhhccccccH------HHHHHHHHHhcCCCcEEEEEe
Confidence 222222 34689999987554432 233344433 3899999853
|
| >d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Indolethylamine N-methyltransferase, INMT species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.91 E-value=4.9e-10 Score=102.32 Aligned_cols=126 Identities=12% Similarity=0.052 Sum_probs=79.2
Q ss_pred HHHHHHHHCC--CCCCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCC-CCceeechhhhHh
Q 015771 18 VTESFARRLP--GFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKD-LPLIHSYNSIQAL 94 (400)
Q Consensus 18 vL~el~~rlp--~~~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~-~~~~~~~~~~~~l 94 (400)
++.++.+.+. ..++.+|||+|||+|..++.++. ....+|+++|.|+.|++.|++.+..... .........+.++
T Consensus 37 ~~~~~~~~~~~~~~~g~~vLDlGcG~G~~~~~~~~---~~~~~v~giD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~ 113 (257)
T d2a14a1 37 NLECLHKTFGPGGLQGDTLIDIGSGPTIYQVLAAC---DSFQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACEL 113 (257)
T ss_dssp HHHHHHHHHSTTSCCEEEEEESSCTTCCGGGTTGG---GTEEEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHH
T ss_pred HHHHHHHHhcccCCCCCEEEEECCCCCHhHHHHhc---cccCcEEEecCCHHHHHHHHHHHhhccccchhhhHHHHHHHh
Confidence 3444444432 23557999999999976543332 1345899999999999999998865421 1100000000000
Q ss_pred --------------------------h-h--hcccCCCcccEEeecccccCCCC-HHHHHHHHHHHHhc--cCCeEEEEc
Q 015771 95 --------------------------N-K--DISKSEREHDLVIASYVLGEVPS-LQDRITIVRQLWDL--TRDVLVLVE 142 (400)
Q Consensus 95 --------------------------~-~--~l~~~~~~~DLVias~~L~eL~~-~~~r~~~i~~Lw~~--~gG~LVlVE 142 (400)
. . ..+...++||+|++.++|++++. .++...+++++.+. |||+||+.+
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~~l~~~~~~~~~~~~~l~~i~~~LkpGG~li~~~ 193 (257)
T d2a14a1 114 EGNSGRWEEKEEKLRAAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLVTTV 193 (257)
T ss_dssp TTCGGGHHHHHHHHHHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred ccccchHHHHHHHHhhhhhcccccccccccccccccCCcccEEeehhhHHHhcccHHHHHHHHHHHHhccCCCcEEEEEE
Confidence 0 0 01234568999999999999864 34556677777764 899999987
Q ss_pred CCCC
Q 015771 143 PGTP 146 (400)
Q Consensus 143 ~Gtp 146 (400)
....
T Consensus 194 ~~~~ 197 (257)
T d2a14a1 194 TLRL 197 (257)
T ss_dssp ESSC
T ss_pred eccc
Confidence 6543
|
| >d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Guanidinoacetate methyltransferase domain: Guanidinoacetate methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.89 E-value=1.6e-09 Score=98.24 Aligned_cols=104 Identities=12% Similarity=0.092 Sum_probs=68.4
Q ss_pred CCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCC-CCceeechhhhHhhhhcccCCCcccEE
Q 015771 30 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKD-LPLIHSYNSIQALNKDISKSEREHDLV 108 (400)
Q Consensus 30 ~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~-~~~~~~~~~~~~l~~~l~~~~~~~DLV 108 (400)
.+.+|||||||+|..+..+++. ...++++||+|+.|++.|++.+..... +..+.. ....+.. ....++||+|
T Consensus 53 ~g~~VLdIGcG~G~~a~~~a~~---~~~~v~~id~s~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~~--~~~~~~fD~i 125 (229)
T d1zx0a1 53 KGGRVLEVGFGMAIAASKVQEA---PIDEHWIIECNDGVFQRLRDWAPRQTHKVIPLKG--LWEDVAP--TLPDGHFDGI 125 (229)
T ss_dssp TCEEEEEECCTTSHHHHHHHTS---CEEEEEEEECCHHHHHHHHHHGGGCSSEEEEEES--CHHHHGG--GSCTTCEEEE
T ss_pred CCCeEEEeeccchHHHHHHHHc---CCCeEEEeCCCHHHHHHHHHHhhhcccccccccc--ccccccc--ccccccccce
Confidence 4579999999999988887743 236899999999999999998865432 111111 1122222 2245678887
Q ss_pred e-----ecccccCCCCHHHHHHHHHHHHhccCCeEEEE
Q 015771 109 I-----ASYVLGEVPSLQDRITIVRQLWDLTRDVLVLV 141 (400)
Q Consensus 109 i-----as~~L~eL~~~~~r~~~i~~Lw~~~gG~LVlV 141 (400)
+ +.+.+.++++...-...+.++++ |||.|++.
T Consensus 126 ~fD~~~~~~~~~~~~~~~~~~~~~~r~Lk-pGG~~~~~ 162 (229)
T d1zx0a1 126 LYDTYPLSEETWHTHQFNFIKNHAFRLLK-PGGVLTYC 162 (229)
T ss_dssp EECCCCCBGGGTTTHHHHHHHHTHHHHEE-EEEEEEEC
T ss_pred eecccccccccccccCHHHHHHHHHHHcC-CCcEEEEE
Confidence 6 56677776544444444555553 89999874
|
| >d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA2 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.89 E-value=6.7e-09 Score=97.70 Aligned_cols=122 Identities=13% Similarity=0.105 Sum_probs=84.6
Q ss_pred HHHHHHHHHHCCCCCCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCCCCceeechhhhHhh
Q 015771 16 LLVTESFARRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALN 95 (400)
Q Consensus 16 ~~vL~el~~rlp~~~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~~~~~~~~~~~~~l~ 95 (400)
.+-++.+.+++.--.+.+|||||||.|..+..+++.++ .++++|+.|++.++.++.++...+....+... ..
T Consensus 47 ~~k~~~~~~~l~l~~G~~VLDiGCG~G~~~~~~a~~~g---~~v~git~s~~q~~~a~~~~~~~~l~~~v~~~--~~--- 118 (291)
T d1kpia_ 47 YAKRKLALDKLNLEPGMTLLDIGCGWGSTMRHAVAEYD---VNVIGLTLSENQYAHDKAMFDEVDSPRRKEVR--IQ--- 118 (291)
T ss_dssp HHHHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHHHC---CEEEEEESCHHHHHHHHHHHHHSCCSSCEEEE--EC---
T ss_pred HHHHHHHHHhcCCCCCCEEEEecCcchHHHHHHHHhcC---cceeeccchHHHHHHHHHHHHhhccchhhhhh--hh---
Confidence 44567777776544558999999999999887777765 58999999999999999988754322222211 11
Q ss_pred hhcccCCCcccEEeecccccCCCCH------HHHHHHHHHHHhc--cCCeEEEEcCCCC
Q 015771 96 KDISKSEREHDLVIASYVLGEVPSL------QDRITIVRQLWDL--TRDVLVLVEPGTP 146 (400)
Q Consensus 96 ~~l~~~~~~~DLVias~~L~eL~~~------~~r~~~i~~Lw~~--~gG~LVlVE~Gtp 146 (400)
+.+..+++||.|++--++.++++. .....+++++.+. |||.+++=.-+.+
T Consensus 119 -d~~~~~~~fD~i~sie~~eH~~~~~~~~~~~~~~~~f~~i~~~LkpgG~~~l~~i~~~ 176 (291)
T d1kpia_ 119 -GWEEFDEPVDRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHTITIP 176 (291)
T ss_dssp -CGGGCCCCCSEEEEESCGGGTTCCSSCCSTTHHHHHHHHHHHTSCTTCEEEEEEEECC
T ss_pred -cccccccccceEeechhHHhcchhhhhhHHHHHHHHHHHHHHhCCCCCceEEEEEecc
Confidence 122346789999999999998753 2234555555553 8999997554433
|
| >d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Thermotoga maritima [TaxId: 2336]
Probab=98.86 E-value=5.2e-09 Score=93.97 Aligned_cols=97 Identities=19% Similarity=0.179 Sum_probs=69.5
Q ss_pred CCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCC--CCCceeechhhhHhhhhcccCCCcccEE
Q 015771 31 PAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK--DLPLIHSYNSIQALNKDISKSEREHDLV 108 (400)
Q Consensus 31 p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~--~~~~~~~~~~~~~l~~~l~~~~~~~DLV 108 (400)
..+|||+|||+|..+..++...+ ....|+++|.++.|++.|+..++... +...+. .+..... ...++||+|
T Consensus 76 g~~VLdiG~GtG~~s~~la~~~~-~~g~V~~id~~~~~~~~a~~~~~~~~~~n~~~~~-----~d~~~~~-~~~~~fD~I 148 (213)
T d1dl5a1 76 GMRVLEIGGGTGYNAAVMSRVVG-EKGLVVSVEYSRKICEIAKRNVERLGIENVIFVC-----GDGYYGV-PEFSPYDVI 148 (213)
T ss_dssp TCEEEEECCTTSHHHHHHHHHHC-TTCEEEEEESCHHHHHHHHHHHHHTTCCSEEEEE-----SCGGGCC-GGGCCEEEE
T ss_pred cceEEEecCccchhHHHHHHHhC-CCCcEEEeecchhhHHHhhhhHhhhccccccccc-----CchHHcc-ccccchhhh
Confidence 47999999999998887777665 34689999999999999999887542 222221 1222222 245689999
Q ss_pred eecccccCCCCHHHHHHHHHHHHhccCCeEEEE
Q 015771 109 IASYVLGEVPSLQDRITIVRQLWDLTRDVLVLV 141 (400)
Q Consensus 109 ias~~L~eL~~~~~r~~~i~~Lw~~~gG~LVlV 141 (400)
++..++.++++ .++++| +|||.||+.
T Consensus 149 ~~~~~~~~~p~-----~l~~~L--kpGG~lv~p 174 (213)
T d1dl5a1 149 FVTVGVDEVPE-----TWFTQL--KEGGRVIVP 174 (213)
T ss_dssp EECSBBSCCCH-----HHHHHE--EEEEEEEEE
T ss_pred hhhccHHHhHH-----HHHHhc--CCCcEEEEE
Confidence 99999999873 233332 489999874
|
| >d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA1 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.86 E-value=9.4e-09 Score=96.40 Aligned_cols=120 Identities=13% Similarity=0.075 Sum_probs=83.9
Q ss_pred HHHHHHHHHHHHHCCCCCCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCCCCceeechhhh
Q 015771 13 LFTLLVTESFARRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQ 92 (400)
Q Consensus 13 a~~~~vL~el~~rlp~~~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~~~~~~~~~~~~ 92 (400)
.+-.+.++.+.+++.--...+|||+|||.|..+..+++..+ .+|++|.+|++.++.|++++.+......+... ..
T Consensus 45 eAQ~~k~~~~~~~l~l~~G~~VLDiGCG~G~~a~~~a~~~g---~~v~git~s~~Q~~~a~~~~~~~g~~~~v~~~--~~ 119 (285)
T d1kpga_ 45 EAQIAKIDLALGKLGLQPGMTLLDVGCGWGATMMRAVEKYD---VNVVGLTLSKNQANHVQQLVANSENLRSKRVL--LA 119 (285)
T ss_dssp HHHHHHHHHHHTTTTCCTTCEEEEETCTTSHHHHHHHHHHC---CEEEEEESCHHHHHHHHHHHHTCCCCSCEEEE--ES
T ss_pred HHHHHHHHHHHHHcCCCCCCEEEEecCcchHHHHHHHhcCC---cceEEEeccHHHHHHHHHHHHhhhhhhhhHHH--Hh
Confidence 34456677888887655558999999999998887776664 59999999999999999988765443333221 11
Q ss_pred HhhhhcccCCCcccEEeecccccCCCCHHHHHHHHHHHHh--ccCCeEEEEc
Q 015771 93 ALNKDISKSEREHDLVIASYVLGEVPSLQDRITIVRQLWD--LTRDVLVLVE 142 (400)
Q Consensus 93 ~l~~~l~~~~~~~DLVias~~L~eL~~~~~r~~~i~~Lw~--~~gG~LVlVE 142 (400)
+. ...+++||-|++-.++.++... ....+++++.+ +|||.++|-.
T Consensus 120 d~----~~~~~~fD~i~si~~~eh~~~~-~~~~~~~~~~r~LkpgG~~~l~~ 166 (285)
T d1kpga_ 120 GW----EQFDEPVDRIVSIGAFEHFGHE-RYDAFFSLAHRLLPADGVMLLHT 166 (285)
T ss_dssp CG----GGCCCCCSEEEEESCGGGTCTT-THHHHHHHHHHHSCTTCEEEEEE
T ss_pred hh----hcccccccceeeehhhhhcCch-hHHHHHHHHHhhcCCCCcEEEEE
Confidence 22 1234689999999999998643 22344444433 3899998643
|
| >d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Precorrin-6Y methyltransferase (CbiT) domain: Precorrin-6Y methyltransferase (CbiT) species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=98.82 E-value=6.2e-09 Score=91.21 Aligned_cols=101 Identities=14% Similarity=0.108 Sum_probs=67.2
Q ss_pred CCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCCCCceeechhhhHhhhhcccCCCcccEEe
Q 015771 30 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDISKSEREHDLVI 109 (400)
Q Consensus 30 ~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~~~~~~~~~~~~~l~~~l~~~~~~~DLVi 109 (400)
...+|||+|||+|..+.+++.. ..+|+++|.|++|++.|++.++...-...+... ..+... .......||+|+
T Consensus 33 ~g~~VLDiGcGsG~~s~~lA~~----~~~V~avD~~~~~l~~a~~n~~~~gl~~~v~~~--~gda~~-~~~~~~~~D~v~ 105 (186)
T d1l3ia_ 33 KNDVAVDVGCGTGGVTLELAGR----VRRVYAIDRNPEAISTTEMNLQRHGLGDNVTLM--EGDAPE-ALCKIPDIDIAV 105 (186)
T ss_dssp TTCEEEEESCTTSHHHHHHHTT----SSEEEEEESCHHHHHHHHHHHHHTTCCTTEEEE--ESCHHH-HHTTSCCEEEEE
T ss_pred CCCEEEEEECCeEccccccccc----ceEEEEecCCHHHHHHHHHHHHHcCCCcceEEE--ECchhh-cccccCCcCEEE
Confidence 4579999999999998887742 458999999999999999988764311222110 111221 122346899999
Q ss_pred ecccccCCCCHHHHHHHHHHHHhc--cCCeEEEEcC
Q 015771 110 ASYVLGEVPSLQDRITIVRQLWDL--TRDVLVLVEP 143 (400)
Q Consensus 110 as~~L~eL~~~~~r~~~i~~Lw~~--~gG~LVlVE~ 143 (400)
+.....++ ..+++.+++. +||.||+...
T Consensus 106 ~~~~~~~~------~~~~~~~~~~LkpgG~lvi~~~ 135 (186)
T d1l3ia_ 106 VGGSGGEL------QEILRIIKDKLKPGGRIIVTAI 135 (186)
T ss_dssp ESCCTTCH------HHHHHHHHHTEEEEEEEEEEEC
T ss_pred EeCccccc------hHHHHHHHHHhCcCCEEEEEee
Confidence 87655443 2345555543 8999987754
|
| >d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein Ta0852 species: Thermoplasma acidophilum [TaxId: 2303]
Probab=98.81 E-value=2.6e-09 Score=98.46 Aligned_cols=104 Identities=15% Similarity=0.211 Sum_probs=71.3
Q ss_pred CCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCCCCceeechhhhHhhhhcccCCCcccEEe
Q 015771 30 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDISKSEREHDLVI 109 (400)
Q Consensus 30 ~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~~~~~~~~~~~~~l~~~l~~~~~~~DLVi 109 (400)
.+.+|||+|||+|..+.+++...+ ...+|+++|.+++|++.|++.+++......+... ..++...+ .+..||.|+
T Consensus 85 pG~rVLEiG~GsG~lt~~la~~v~-~~g~V~~vD~~e~~~~~A~~n~~~~~~~~nv~~~--~~Di~~~~--~~~~fD~V~ 159 (250)
T d1yb2a1 85 PGMDILEVGVGSGNMSSYILYALN-GKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTS--RSDIADFI--SDQMYDAVI 159 (250)
T ss_dssp TTCEEEEECCTTSHHHHHHHHHHT-TSSEEEEECSCHHHHHHHHHHHHTTSCCTTEEEE--CSCTTTCC--CSCCEEEEE
T ss_pred CcCEEEEeeeeCcHHHHHHHHHhC-CCcEEEEEECCHHHHHHHHHHHHHhcCCCceEEE--Eeeeeccc--ccceeeeee
Confidence 347999999999999888887664 3468999999999999999998765333222211 12233222 356899998
Q ss_pred ecccccCCCCHHHHHHHHHHHHhccCCeEEEEcCC
Q 015771 110 ASYVLGEVPSLQDRITIVRQLWDLTRDVLVLVEPG 144 (400)
Q Consensus 110 as~~L~eL~~~~~r~~~i~~Lw~~~gG~LVlVE~G 144 (400)
+ .++++......+.+++ +|||.|++..|.
T Consensus 160 l-----d~p~p~~~l~~~~~~L-KpGG~lv~~~P~ 188 (250)
T d1yb2a1 160 A-----DIPDPWNHVQKIASMM-KPGSVATFYLPN 188 (250)
T ss_dssp E-----CCSCGGGSHHHHHHTE-EEEEEEEEEESS
T ss_pred e-----cCCchHHHHHHHHHhc-CCCceEEEEeCC
Confidence 5 3555554444444444 389999998774
|
| >d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=98.79 E-value=7.4e-09 Score=92.77 Aligned_cols=103 Identities=14% Similarity=0.055 Sum_probs=65.7
Q ss_pred CCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCCCCceeechhhhHhhhhcccCCCcccEEee
Q 015771 31 PAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDISKSEREHDLVIA 110 (400)
Q Consensus 31 p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~~~~~~~~~~~~~l~~~l~~~~~~~DLVia 110 (400)
..+|||+|||+|+.+..+++..++ .+|++||.|+.|++.++..++...++..+... .. ........+|.|.+
T Consensus 57 g~~VLDlGcG~G~~~~~la~~v~~--g~V~gvDis~~~i~~a~~~a~~~~ni~~i~~d-----~~-~~~~~~~~~~~vd~ 128 (209)
T d1nt2a_ 57 DERVLYLGAASGTTVSHLADIVDE--GIIYAVEYSAKPFEKLLELVRERNNIIPLLFD-----AS-KPWKYSGIVEKVDL 128 (209)
T ss_dssp SCEEEEETCTTSHHHHHHHHHTTT--SEEEEECCCHHHHHHHHHHHHHCSSEEEECSC-----TT-CGGGTTTTCCCEEE
T ss_pred CCEEEEeCCcCCHHHHHHHHhccC--CeEEEEeCCHHHHHHHHHHhhccCCceEEEee-----cc-CccccccccceEEE
Confidence 379999999999999999988873 48999999999999999888765554333211 11 11111223333322
Q ss_pred cccccCCCCHHHHHHHHHHHHh--ccCCeEEEEcC
Q 015771 111 SYVLGEVPSLQDRITIVRQLWD--LTRDVLVLVEP 143 (400)
Q Consensus 111 s~~L~eL~~~~~r~~~i~~Lw~--~~gG~LVlVE~ 143 (400)
.+ +.+....+...++.++.+ ++||.++|+..
T Consensus 129 v~--~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 161 (209)
T d1nt2a_ 129 IY--QDIAQKNQIEILKANAEFFLKEKGEVVIMVK 161 (209)
T ss_dssp EE--ECCCSTTHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred EE--ecccChhhHHHHHHHHHHHhccCCeEEEEEE
Confidence 22 222223344556665554 38999998864
|
| >d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=98.75 E-value=7.1e-09 Score=94.09 Aligned_cols=104 Identities=10% Similarity=0.041 Sum_probs=69.6
Q ss_pred CCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCCCCceeechhhhHhhhhcccCCCcccEEee
Q 015771 31 PAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDISKSEREHDLVIA 110 (400)
Q Consensus 31 p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~~~~~~~~~~~~~l~~~l~~~~~~~DLVia 110 (400)
+.+|||+|||+|+.+..+++..+ ...+|++||.|+.|++.++.+++...++..+.... . .....+.....+|+|++
T Consensus 74 G~~VLDlGaGsG~~t~~la~~VG-~~G~V~aVD~s~~~l~~a~~~a~~~~~~~~i~~d~--~-~~~~~~~~~~~vD~i~~ 149 (227)
T d1g8aa_ 74 GKSVLYLGIASGTTASHVSDIVG-WEGKIFGIEFSPRVLRELVPIVEERRNIVPILGDA--T-KPEEYRALVPKVDVIFE 149 (227)
T ss_dssp TCEEEEETTTSTTHHHHHHHHHC-TTSEEEEEESCHHHHHHHHHHHSSCTTEEEEECCT--T-CGGGGTTTCCCEEEEEE
T ss_pred CCEEEEeccCCCHHHHHHHHHhC-CCCEEEEEeCcHHHHHHHHHHHHhcCCceEEEEEC--C-CcccccccccceEEEEE
Confidence 37999999999999999998886 35699999999999999999987655543222110 0 11112223356787765
Q ss_pred cccccCCCCHHHHHHHHHHHHh--ccCCeEEEEcC
Q 015771 111 SYVLGEVPSLQDRITIVRQLWD--LTRDVLVLVEP 143 (400)
Q Consensus 111 s~~L~eL~~~~~r~~~i~~Lw~--~~gG~LVlVE~ 143 (400)
.. +...+...++.++.+ ++||.++|+..
T Consensus 150 d~-----~~~~~~~~~l~~~~~~LkpgG~lvi~~k 179 (227)
T d1g8aa_ 150 DV-----AQPTQAKILIDNAEVYLKRGGYGMIAVK 179 (227)
T ss_dssp CC-----CSTTHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred Ec-----cccchHHHHHHHHHHhcccCCeEEEEEE
Confidence 32 223344455666554 38999998753
|
| >d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Sulfolobus tokodaii [TaxId: 111955]
Probab=98.75 E-value=2.2e-08 Score=90.63 Aligned_cols=94 Identities=22% Similarity=0.212 Sum_probs=68.2
Q ss_pred CCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCCCCceeechhhhHhhhhcccCCCcccEEee
Q 015771 31 PAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDISKSEREHDLVIA 110 (400)
Q Consensus 31 p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~~~~~~~~~~~~~l~~~l~~~~~~~DLVia 110 (400)
..+|||+|||+|..+..++... .+|+++|.++++.+.|++++....++.++... .....+ ..++||.|++
T Consensus 71 g~~VLdIG~GsGy~ta~La~l~----~~V~aiE~~~~~~~~A~~~~~~~~nv~~~~~d-----~~~g~~-~~~pfD~Iiv 140 (224)
T d1vbfa_ 71 GQKVLEIGTGIGYYTALIAEIV----DKVVSVEINEKMYNYASKLLSYYNNIKLILGD-----GTLGYE-EEKPYDRVVV 140 (224)
T ss_dssp TCEEEEECCTTSHHHHHHHHHS----SEEEEEESCHHHHHHHHHHHTTCSSEEEEESC-----GGGCCG-GGCCEEEEEE
T ss_pred cceEEEecCCCCHHHHHHHHHh----cccccccccHHHHHHHHHHHhcccccccccCc-----hhhcch-hhhhHHHHHh
Confidence 4799999999998876666543 48999999999999999988766554444322 222222 3568999999
Q ss_pred cccccCCCCHHHHHHHHHHHHhccCCeEEEE
Q 015771 111 SYVLGEVPSLQDRITIVRQLWDLTRDVLVLV 141 (400)
Q Consensus 111 s~~L~eL~~~~~r~~~i~~Lw~~~gG~LVlV 141 (400)
+.++.+++. .++++| ++||.||+.
T Consensus 141 ~~a~~~ip~-----~l~~qL--k~GGrLV~p 164 (224)
T d1vbfa_ 141 WATAPTLLC-----KPYEQL--KEGGIMILP 164 (224)
T ss_dssp SSBBSSCCH-----HHHHTE--EEEEEEEEE
T ss_pred hcchhhhhH-----HHHHhc--CCCCEEEEE
Confidence 999999872 223332 379999975
|
| >d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Probable methyltransferase Rv2118c species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.73 E-value=7.4e-09 Score=96.02 Aligned_cols=107 Identities=16% Similarity=0.134 Sum_probs=74.6
Q ss_pred CCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCC--CCCceeechhhhHhhhhcccCCCcccE
Q 015771 30 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK--DLPLIHSYNSIQALNKDISKSEREHDL 107 (400)
Q Consensus 30 ~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~--~~~~~~~~~~~~~l~~~l~~~~~~~DL 107 (400)
.+.+|||+|||+|..+.+++...+ ...+++++|.+++|++.|++.++... ....+... ..++.. .+.+++.||.
T Consensus 96 PG~~VLE~G~GsG~lt~~La~~vg-p~G~V~~~d~~~~~~~~Ar~n~~~~~~~~~~nv~~~--~~d~~~-~~~~~~~fDa 171 (264)
T d1i9ga_ 96 PGARVLEAGAGSGALTLSLLRAVG-PAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLV--VSDLAD-SELPDGSVDR 171 (264)
T ss_dssp TTCEEEEECCTTSHHHHHHHHHHC-TTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEE--CSCGGG-CCCCTTCEEE
T ss_pred CCCEEEecCcCCcHHHHHHHHhhC-CCcEEEEecCCHHHHHHHHHhhhhhccCCCceEEEE--eccccc-ccccCCCcce
Confidence 347999999999999999887765 34689999999999999998776421 11111110 122221 2335678999
Q ss_pred EeecccccCCCCHHHHHHHHHHHHhccCCeEEEEcCCCC
Q 015771 108 VIASYVLGEVPSLQDRITIVRQLWDLTRDVLVLVEPGTP 146 (400)
Q Consensus 108 Vias~~L~eL~~~~~r~~~i~~Lw~~~gG~LVlVE~Gtp 146 (400)
|++ .++++.+....+.++++ |||.|++..|..-
T Consensus 172 V~l-----dlp~P~~~l~~~~~~Lk-pGG~lv~~~P~i~ 204 (264)
T d1i9ga_ 172 AVL-----DMLAPWEVLDAVSRLLV-AGGVLMVYVATVT 204 (264)
T ss_dssp EEE-----ESSCGGGGHHHHHHHEE-EEEEEEEEESSHH
T ss_pred EEE-----ecCCHHHHHHHHHhccC-CCCEEEEEeCccC
Confidence 975 47777766666666664 8999999887543
|
| >d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein TM0748 species: Thermotoga maritima [TaxId: 2336]
Probab=98.68 E-value=1.7e-08 Score=93.73 Aligned_cols=105 Identities=16% Similarity=0.169 Sum_probs=72.4
Q ss_pred CCCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCCCCceeechhhhHhhhhcccCCCcccEE
Q 015771 29 FSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDISKSEREHDLV 108 (400)
Q Consensus 29 ~~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~~~~~~~~~~~~~l~~~l~~~~~~~DLV 108 (400)
..+.+|||+|||+|..+.+++...+ ...+++++|.|++|++.|++.++.......+... ..++... .....+|.|
T Consensus 102 ~pG~~VLDiG~GsG~lt~~lA~~~~-~~G~V~~vD~~~~~~~~A~~~~~~~g~~~~v~~~--~~d~~~~--~~~~~~D~V 176 (266)
T d1o54a_ 102 KEGDRIIDTGVGSGAMCAVLARAVG-SSGKVFAYEKREEFAKLAESNLTKWGLIERVTIK--VRDISEG--FDEKDVDAL 176 (266)
T ss_dssp CTTCEEEEECCTTSHHHHHHHHHTT-TTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEE--CCCGGGC--CSCCSEEEE
T ss_pred CCCCEEEECCCCCCHHHHHHHHHhC-CCcEEEEEeCCHHHHHHHHHHHHHhccccCcEEE--ecccccc--ccccceeee
Confidence 3447999999999999998888775 3568999999999999999998765322222111 1122211 234567776
Q ss_pred eecccccCCCCHHHHHHHHHHHHhccCCeEEEEcCC
Q 015771 109 IASYVLGEVPSLQDRITIVRQLWDLTRDVLVLVEPG 144 (400)
Q Consensus 109 ias~~L~eL~~~~~r~~~i~~Lw~~~gG~LVlVE~G 144 (400)
+ ..++++.+....+.++++ |||.|++..|.
T Consensus 177 ~-----~d~p~p~~~l~~~~~~LK-pGG~lv~~~P~ 206 (266)
T d1o54a_ 177 F-----LDVPDPWNYIDKCWEALK-GGGRFATVCPT 206 (266)
T ss_dssp E-----ECCSCGGGTHHHHHHHEE-EEEEEEEEESS
T ss_pred E-----ecCCCHHHHHHHHHhhcC-CCCEEEEEeCc
Confidence 5 356777655555555553 89999998874
|
| >d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.67 E-value=2.4e-08 Score=90.32 Aligned_cols=100 Identities=17% Similarity=0.134 Sum_probs=67.3
Q ss_pred CeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCC--C--CCceeechhhhHhhhhcccCCCcccE
Q 015771 32 AKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK--D--LPLIHSYNSIQALNKDISKSEREHDL 107 (400)
Q Consensus 32 ~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~--~--~~~~~~~~~~~~l~~~l~~~~~~~DL 107 (400)
.+|||+|||+|..+..++...+ ...+|+++|.+++|++.|++.++... + ...+... ..+.... ......||.
T Consensus 78 ~~VLdiG~GsGy~ta~la~l~~-~~g~V~~ie~~~~l~~~a~~~l~~~~~~~~~~~~~~~~--~gD~~~~-~~~~~~fD~ 153 (224)
T d1i1na_ 78 AKALDVGSGSGILTACFARMVG-CTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLV--VGDGRMG-YAEEAPYDA 153 (224)
T ss_dssp CEEEEETCTTSHHHHHHHHHHC-TTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEE--ESCGGGC-CGGGCCEEE
T ss_pred CeEEEecCCCCHHHHHHHHHhC-CCceEEEEcCCHHHHHHHHHhccccCcccccccceEEE--Eeecccc-cchhhhhhh
Confidence 6999999999987766665543 34689999999999999998875421 0 1111100 1122211 224568999
Q ss_pred EeecccccCCCCHHHHHHHHHHHHhccCCeEEEEc
Q 015771 108 VIASYVLGEVPSLQDRITIVRQLWDLTRDVLVLVE 142 (400)
Q Consensus 108 Vias~~L~eL~~~~~r~~~i~~Lw~~~gG~LVlVE 142 (400)
|++..++.+++. .++++| ++||.||+..
T Consensus 154 I~~~~~~~~ip~-----~l~~~L--kpGG~LV~pv 181 (224)
T d1i1na_ 154 IHVGAAAPVVPQ-----ALIDQL--KPGGRLILPV 181 (224)
T ss_dssp EEECSBBSSCCH-----HHHHTE--EEEEEEEEEE
T ss_pred hhhhcchhhcCH-----HHHhhc--CCCcEEEEEE
Confidence 999999999872 233333 4899999854
|
| >d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.56 E-value=2.5e-07 Score=88.04 Aligned_cols=119 Identities=10% Similarity=0.092 Sum_probs=75.4
Q ss_pred HHHHHHHCCCCCCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCC-----------CCCCceee
Q 015771 19 TESFARRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGP-----------KDLPLIHS 87 (400)
Q Consensus 19 L~el~~rlp~~~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~-----------~~~~~~~~ 87 (400)
+.++.+.+.--...+|||+|||+|..+..++...+ ..++++||.|+.|++.|+..++.. .++.++..
T Consensus 140 ~~~~~~~~~l~~~~~vlD~GcG~G~~~~~~a~~~~--~~~~~Gid~s~~~~~~a~~~~~~~~~~~~~~g~~~~~i~~~~g 217 (328)
T d1nw3a_ 140 VAQMIDEIKMTDDDLFVDLGSGVGQVVLQVAAATN--CKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERG 217 (328)
T ss_dssp HHHHHHHSCCCTTCEEEEETCTTSHHHHHHHHHCC--CSEEEEEECSHHHHHHHHHHHHHHHHHHHHHTCCCCCEEEEEC
T ss_pred HHHHHHHcCCCCCCEEEEcCCCCCHHHHHHHHHhC--CCeEEEEeCCHHHHHHHHHHHHHHHHHhhhccccCCceEEEEC
Confidence 45555555333347999999999999988877765 458999999999999998876531 12222222
Q ss_pred chhhhHhhhhcccCC--CcccEEeecccccCCCCHHHHHHHHHHHHh--ccCCeEEEEcCCCCCch
Q 015771 88 YNSIQALNKDISKSE--REHDLVIASYVLGEVPSLQDRITIVRQLWD--LTRDVLVLVEPGTPQGS 149 (400)
Q Consensus 88 ~~~~~~l~~~l~~~~--~~~DLVias~~L~eL~~~~~r~~~i~~Lw~--~~gG~LVlVE~Gtp~Gf 149 (400)
. +. ..+... ..+|+|++.+. .+.+ +....+.++++ +|||.+|..++-.|.+|
T Consensus 218 d-----~~-~~~~~~~~~~advi~~~~~-~f~~---~~~~~l~e~~r~LKpGg~iv~~~~~~~~~~ 273 (328)
T d1nw3a_ 218 D-----FL-SEEWRERIANTSVIFVNNF-AFGP---EVDHQLKERFANMKEGGRIVSSKPFAPLNF 273 (328)
T ss_dssp C-----TT-SHHHHHHHHHCSEEEECCT-TTCH---HHHHHHHHHHTTCCTTCEEEESSCSSCTTC
T ss_pred c-----cc-ccccccccCcceEEEEcce-ecch---HHHHHHHHHHHhCCCCcEEEEecccCCCCc
Confidence 1 11 011111 12477776543 3332 34456667765 38999999888777766
|
| >d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Bacillus subtilis [TaxId: 1423]
Probab=98.55 E-value=2.7e-07 Score=82.03 Aligned_cols=104 Identities=10% Similarity=0.070 Sum_probs=70.2
Q ss_pred CeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCC--CCCCceeechhhhHhhhhcccCCCcccEEe
Q 015771 32 AKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGP--KDLPLIHSYNSIQALNKDISKSEREHDLVI 109 (400)
Q Consensus 32 ~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~--~~~~~~~~~~~~~~l~~~l~~~~~~~DLVi 109 (400)
..|||||||+|..+..++..+|+ ..+++||.+..|+..|...+... .|+.++... ...+...+ ..+.+|.|.
T Consensus 31 PlvLeIGcG~G~~~~~lA~~~p~--~~~iGiD~~~~~i~~a~~~~~~~~l~Nv~~~~~D--a~~l~~~~--~~~~~d~v~ 104 (204)
T d2fcaa1 31 PIHIEVGTGKGQFISGMAKQNPD--INYIGIELFKSVIVTAVQKVKDSEAQNVKLLNID--ADTLTDVF--EPGEVKRVY 104 (204)
T ss_dssp CEEEEECCTTSHHHHHHHHHCTT--SEEEEECSCHHHHHHHHHHHHHSCCSSEEEECCC--GGGHHHHC--CTTSCCEEE
T ss_pred ceEEEEEecCcHHHHHHHHhCCC--CcEEEeecchHHHHHHHHHHHHHhccCchhcccc--hhhhhccc--Cchhhhccc
Confidence 37999999999999999988874 58999999999999888777543 233333322 11222222 457899998
Q ss_pred ecccccCCCCHH--------HHHHHHHHHHhccCCeEEEEc
Q 015771 110 ASYVLGEVPSLQ--------DRITIVRQLWDLTRDVLVLVE 142 (400)
Q Consensus 110 as~~L~eL~~~~--------~r~~~i~~Lw~~~gG~LVlVE 142 (400)
+.+..-+..... +-...+.++++ |||.|+|..
T Consensus 105 i~fp~P~~k~~h~k~Rl~~~~~l~~~~r~Lk-pgG~l~i~T 144 (204)
T d2fcaa1 105 LNFSDPWPKKRHEKRRLTYSHFLKKYEEVMG-KGGSIHFKT 144 (204)
T ss_dssp EESCCCCCSGGGGGGSTTSHHHHHHHHHHHT-TSCEEEEEE
T ss_pred cccccccchhhhcchhhhHHHHHHHHHHhCC-CCcEEEEEE
Confidence 888766543211 22334445553 899999873
|
| >d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Arginine methyltransferase, HMT1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.50 E-value=1.6e-07 Score=89.16 Aligned_cols=103 Identities=17% Similarity=0.111 Sum_probs=63.1
Q ss_pred CCCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCCCCceeechhhhHhhhhcccCCCcccEE
Q 015771 29 FSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDISKSEREHDLV 108 (400)
Q Consensus 29 ~~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~~~~~~~~~~~~~l~~~l~~~~~~~DLV 108 (400)
++.++|||+|||+|..+..+++. ...+|+++|.|+ |+..|++.....+....+... ..++. .++.+..+||+|
T Consensus 37 ~~~~~VLDlGcGtG~ls~~aa~~---Ga~~V~avd~s~-~~~~a~~~~~~~~~~~~i~~i--~~~~~-~l~~~~~~~D~i 109 (328)
T d1g6q1_ 37 FKDKIVLDVGCGTGILSMFAAKH---GAKHVIGVDMSS-IIEMAKELVELNGFSDKITLL--RGKLE-DVHLPFPKVDII 109 (328)
T ss_dssp HTTCEEEEETCTTSHHHHHHHHT---CCSEEEEEESST-HHHHHHHHHHHTTCTTTEEEE--ESCTT-TSCCSSSCEEEE
T ss_pred CCcCEEEEeCCCCCHHHHHHHHh---CCCEEEEEeCCH-HHHHHHHHHHHhCccccceEE--Eeehh-hccCcccceeEE
Confidence 45589999999999888777653 235899999996 667777766543222211110 01121 233456789999
Q ss_pred eecccccCCCCHH---HHHHHHHHHHhccCCeEE
Q 015771 109 IASYVLGEVPSLQ---DRITIVRQLWDLTRDVLV 139 (400)
Q Consensus 109 ias~~L~eL~~~~---~r~~~i~~Lw~~~gG~LV 139 (400)
++..+++.+.... .......+++ +|||.++
T Consensus 110 ~se~~~~~~~~e~~~~~~~~a~~r~L-kpgG~ii 142 (328)
T d1g6q1_ 110 ISEWMGYFLLYESMMDTVLYARDHYL-VEGGLIF 142 (328)
T ss_dssp EECCCBTTBSTTCCHHHHHHHHHHHE-EEEEEEE
T ss_pred EEEecceeeccchhHHHHHHHHHhcc-CCCeEEE
Confidence 9876665554332 2333444555 3788765
|
| >d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.48 E-value=2.1e-07 Score=90.94 Aligned_cols=126 Identities=8% Similarity=-0.031 Sum_probs=74.7
Q ss_pred HHHHHHHHCCCCCCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCC--------CCCceeech
Q 015771 18 VTESFARRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK--------DLPLIHSYN 89 (400)
Q Consensus 18 vL~el~~rlp~~~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~--------~~~~~~~~~ 89 (400)
.+.++.+++.--...+|||+|||+|..+..++..++ ..+++|||.|+.|++.|+...+... .........
T Consensus 204 ~i~~Il~~l~Lkpgd~fLDLGCG~G~~vl~aA~~~g--~~~v~GIDiS~~~i~~Ak~~~~e~~~~~~~~g~~~~~~~~~~ 281 (406)
T d1u2za_ 204 FLSDVYQQCQLKKGDTFMDLGSGVGNCVVQAALECG--CALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSL 281 (406)
T ss_dssp HHHHHHHHTTCCTTCEEEEESCTTSHHHHHHHHHHC--CSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEE
T ss_pred HHHHHHHHhCCCCCCEEEeCCCCCcHHHHHHHHHcC--CCeEEEEeCCHHHHHHHHHHHHHHhhhhhhhccccccceeee
Confidence 344555554332337999999999999998887775 3589999999999999998765310 000000000
Q ss_pred hhhHhhh-hcccCCCcccEEeecccccCCCCHHHHHHHHHHHHhc--cCCeEEEEcCCCCCch
Q 015771 90 SIQALNK-DISKSEREHDLVIASYVLGEVPSLQDRITIVRQLWDL--TRDVLVLVEPGTPQGS 149 (400)
Q Consensus 90 ~~~~l~~-~l~~~~~~~DLVias~~L~eL~~~~~r~~~i~~Lw~~--~gG~LVlVE~Gtp~Gf 149 (400)
....... .....-..+|+|++.+. .+. .+....+.++++. |||.+|..++--|.++
T Consensus 282 ~~~f~~~~~~d~~~~~adVV~inn~-~f~---~~l~~~L~ei~r~LKPGGrIVs~~~~~~~~~ 340 (406)
T d1u2za_ 282 KKSFVDNNRVAELIPQCDVILVNNF-LFD---EDLNKKVEKILQTAKVGCKIISLKSLRSLTY 340 (406)
T ss_dssp SSCSTTCHHHHHHGGGCSEEEECCT-TCC---HHHHHHHHHHHTTCCTTCEEEESSCSSCTTC
T ss_pred eechhhccccccccccceEEEEecc-cCc---hHHHHHHHHHHHhcCCCcEEEEecccCCCch
Confidence 0000000 00011235678877543 232 3455666777653 8999998876555544
|
| >d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 3, PRMT3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.44 E-value=3.8e-07 Score=85.82 Aligned_cols=103 Identities=17% Similarity=0.146 Sum_probs=63.7
Q ss_pred CCCCCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCC--CCCceeechhhhHhhhhcccCCCc
Q 015771 27 PGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK--DLPLIHSYNSIQALNKDISKSERE 104 (400)
Q Consensus 27 p~~~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~--~~~~~~~~~~~~~l~~~l~~~~~~ 104 (400)
..+++++|||+|||+|..++.++.. ...+|+++|.|+.|....+....+.. ++.++.. ++. .+.....+
T Consensus 32 ~~~~~~~VLDiGcG~G~lsl~aa~~---Ga~~V~aid~s~~~~~a~~~~~~~~~~~~i~~~~~-----~~~-~l~~~~~~ 102 (311)
T d2fyta1 32 HIFKDKVVLDVGCGTGILSMFAAKA---GAKKVLGVDQSEILYQAMDIIRLNKLEDTITLIKG-----KIE-EVHLPVEK 102 (311)
T ss_dssp GGTTTCEEEEETCTTSHHHHHHHHT---TCSEEEEEESSTHHHHHHHHHHHTTCTTTEEEEES-----CTT-TSCCSCSC
T ss_pred ccCCcCEEEEECCCCCHHHHHHHHc---CCCEEEEEeCHHHHHHHHHHHHHhCCCccceEEEe-----eHH-HhcCcccc
Confidence 3467789999999999988776653 23689999999998765554443321 1112221 121 23334578
Q ss_pred ccEEeecccccCCCCHH---HHHHHHHHHHhccCCeEE
Q 015771 105 HDLVIASYVLGEVPSLQ---DRITIVRQLWDLTRDVLV 139 (400)
Q Consensus 105 ~DLVias~~L~eL~~~~---~r~~~i~~Lw~~~gG~LV 139 (400)
||+|++..+.+.+.... ......++++ +|||.+|
T Consensus 103 ~D~Ivse~~~~~~~~e~~~~~~~~a~~~~L-kp~G~ii 139 (311)
T d2fyta1 103 VDVIISEWMGYFLLFESMLDSVLYAKNKYL-AKGGSVY 139 (311)
T ss_dssp EEEEEECCCBTTBTTTCHHHHHHHHHHHHE-EEEEEEE
T ss_pred ceEEEEeeeeeecccccccHHHHHHHHhcC-CCCcEEe
Confidence 99999876666554322 2223334444 3788776
|
| >d1af7a2 c.66.1.8 (A:92-284) Chemotaxis receptor methyltransferase CheR, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Chemotaxis receptor methyltransferase CheR, C-terminal domain domain: Chemotaxis receptor methyltransferase CheR, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=98.44 E-value=2.2e-07 Score=81.76 Aligned_cols=114 Identities=15% Similarity=0.089 Sum_probs=71.4
Q ss_pred CCCCCCeEEEEccchhHHHHH----HHHHCC--CCCcEEEEEeCCHHHHHHHHHhhcCC---CCCCc------e-e----
Q 015771 27 PGFSPAKVLDFGAGTGSAFWA----LREVWP--RSLEKVNLVEPSQSMQRAGQSLMQGP---KDLPL------I-H---- 86 (400)
Q Consensus 27 p~~~p~~VLDvG~G~Gt~~~A----l~~~~~--~~~~~v~~vD~S~~ml~~a~~ll~~~---~~~~~------~-~---- 86 (400)
+...+.+|+++|||+|--++. +.+... ....+++++|+|+.+++.|+.-.-.. ...+. . .
T Consensus 21 ~~~~~lrIwsaGCstGeE~YSlA~~l~e~~~~~~~~~~I~atDi~~~~l~~A~~g~y~~~~~~~~~~~~~~~yf~~~~~~ 100 (193)
T d1af7a2 21 RRHGEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGP 100 (193)
T ss_dssp HSCSCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTT
T ss_pred ccCCCeEEEEeCCCCchhHHHHHHHHHHhhhhcCCceEEEeecCChHHhhHhhcCcccHHHHhhhhHHHHhhceeecCCC
Confidence 345667999999999965433 333322 12357999999999999997543110 01110 0 0
Q ss_pred ------echhh--------hHhhhhcccCCCcccEEeecccccCCCCHHHHHHHHHHHHhc--cCCeEEEE
Q 015771 87 ------SYNSI--------QALNKDISKSEREHDLVIASYVLGEVPSLQDRITIVRQLWDL--TRDVLVLV 141 (400)
Q Consensus 87 ------~~~~~--------~~l~~~l~~~~~~~DLVias~~L~eL~~~~~r~~~i~~Lw~~--~gG~LVlV 141 (400)
....+ .++....+...+.||+|+|-|+|..++ .+.+.++++++.+. |||+|+|=
T Consensus 101 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~fDvI~CRNVLiYf~-~~~~~~vl~~l~~~L~pGG~L~lG 170 (193)
T d1af7a2 101 HEGLVRVRQELANYVEFSSVNLLEKQYNVPGPFDAIFCRNVMIYFD-KTTQEDILRRFVPLLKPDGLLFAG 170 (193)
T ss_dssp SCSEEEECHHHHTTEEEEECCTTCSSCCCCCCEEEEEECSSGGGSC-HHHHHHHHHHHGGGEEEEEEEEEC
T ss_pred ccceeehHHHHHHHHHHhhhhccccccCCCCCccEEEeehhHHhcC-HHHHHHHHHHHHHHhCCCcEEEEe
Confidence 00000 000000112346899999999999996 77788899999886 89988754
|
| >d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein Ta1320 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=98.43 E-value=2.7e-07 Score=81.59 Aligned_cols=74 Identities=14% Similarity=0.121 Sum_probs=53.3
Q ss_pred HCCCCCCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCCCCceeechhhhHhhhhcccCCCc
Q 015771 25 RLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDISKSERE 104 (400)
Q Consensus 25 rlp~~~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 104 (400)
...++.+++|||+|||+|..+.+++.. ...+|++||.++.+++.|+..+.+ ..++.. ++. ...++
T Consensus 43 ~~~dl~Gk~VLDlGcGtG~l~i~a~~~---ga~~V~~vDid~~a~~~ar~N~~~---~~~~~~-----D~~----~l~~~ 107 (197)
T d1ne2a_ 43 NDGNIGGRSVIDAGTGNGILACGSYLL---GAESVTAFDIDPDAIETAKRNCGG---VNFMVA-----DVS----EISGK 107 (197)
T ss_dssp HHTSSBTSEEEEETCTTCHHHHHHHHT---TBSEEEEEESCHHHHHHHHHHCTT---SEEEEC-----CGG----GCCCC
T ss_pred HcCCCCCCEEEEeCCCCcHHHHHHHHc---CCCcccccccCHHHHHHHHHcccc---ccEEEE-----ehh----hcCCc
Confidence 347788899999999999887765542 235899999999999999987653 222221 222 23468
Q ss_pred ccEEeeccc
Q 015771 105 HDLVIASYV 113 (400)
Q Consensus 105 ~DLVias~~ 113 (400)
||+|+++--
T Consensus 108 fD~Vi~NPP 116 (197)
T d1ne2a_ 108 YDTWIMNPP 116 (197)
T ss_dssp EEEEEECCC
T ss_pred ceEEEeCcc
Confidence 999998633
|
| >d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein PH1948 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=98.42 E-value=4.8e-07 Score=80.08 Aligned_cols=108 Identities=20% Similarity=0.191 Sum_probs=66.3
Q ss_pred HHHHHCCCCCCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCCCCceeechhhhHhhhhccc
Q 015771 21 SFARRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDISK 100 (400)
Q Consensus 21 el~~rlp~~~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~~~~~~~~~~~~~l~~~l~~ 100 (400)
.+....+++.+.+|||+|||+|..+.+++. . ...+|++||.|+.+++.++..++... ... .. +..+...
T Consensus 37 ~~~~~~~dl~g~~vLDlg~GtG~l~i~a~~-~--g~~~v~~vdi~~~~~~~a~~N~~~~~-~~~-~~------~~~d~~~ 105 (201)
T d1wy7a1 37 WLAYSLGDIEGKVVADLGAGTGVLSYGALL-L--GAKEVICVEVDKEAVDVLIENLGEFK-GKF-KV------FIGDVSE 105 (201)
T ss_dssp HHHHHTTSSTTCEEEEETCTTCHHHHHHHH-T--TCSEEEEEESCHHHHHHHHHHTGGGT-TSE-EE------EESCGGG
T ss_pred HHHHhcCCCCCCEEEECcCcchHHHHHHHH-c--CCCEEEEEcCcHHHHHHHHHHHHHcC-CCc-eE------EECchhh
Confidence 444556788889999999999998877653 2 23589999999999999999876532 211 10 0011112
Q ss_pred CCCcccEEeecccccCCCCHHHHHHHHHHHHhccCCeEEEE
Q 015771 101 SEREHDLVIASYVLGEVPSLQDRITIVRQLWDLTRDVLVLV 141 (400)
Q Consensus 101 ~~~~~DLVias~~L~eL~~~~~r~~~i~~Lw~~~gG~LVlV 141 (400)
..++||+|++.--......... ...+...+.. ++.+..+
T Consensus 106 ~~~~fD~Vi~nPP~~~~~~~~d-~~~l~~~~~~-~~~v~~i 144 (201)
T d1wy7a1 106 FNSRVDIVIMNPPFGSQRKHAD-RPFLLKAFEI-SDVVYSI 144 (201)
T ss_dssp CCCCCSEEEECCCCSSSSTTTT-HHHHHHHHHH-CSEEEEE
T ss_pred hCCcCcEEEEcCcccccccccc-HHHHHHHHhh-cccchhc
Confidence 3568999998644333221111 2334444443 4444444
|
| >d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein FLJ20628 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.40 E-value=1.5e-07 Score=89.55 Aligned_cols=104 Identities=13% Similarity=0.118 Sum_probs=66.2
Q ss_pred CCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCC-------------CCCCceeechhhhHhhh
Q 015771 30 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGP-------------KDLPLIHSYNSIQALNK 96 (400)
Q Consensus 30 ~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~-------------~~~~~~~~~~~~~~l~~ 96 (400)
.+.+|||+|||+|..+.+++...+ ...+|+++|.+++|++.|++.++.. .++.+.+ .++..
T Consensus 98 pG~rVLE~GtGsG~lt~~LAr~vg-~~G~V~t~E~~~~~~~~A~~n~~~~~~~~~~~~~~~~~~nv~~~~-----~di~~ 171 (324)
T d2b25a1 98 PGDTVLEAGSGSGGMSLFLSKAVG-SQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIH-----KDISG 171 (324)
T ss_dssp TTCEEEEECCTTSHHHHHHHHHHC-TTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEE-----SCTTC
T ss_pred CCCEEEEecccccHHHHHHHHHhC-CCcEEEEecCCHHHHHHHHHHHHHhhhhhhhhhhhccccceeEEe-----cchhh
Confidence 447999999999999998887765 3468999999999999999877531 0111111 12221
Q ss_pred hc-ccCCCcccEEeecccccCCCCHHHHHHHHHHHHhccCCeEEEEcCCC
Q 015771 97 DI-SKSEREHDLVIASYVLGEVPSLQDRITIVRQLWDLTRDVLVLVEPGT 145 (400)
Q Consensus 97 ~l-~~~~~~~DLVias~~L~eL~~~~~r~~~i~~Lw~~~gG~LVlVE~Gt 145 (400)
.. ......||.|+. .+|++...+..+.+++ +|||.|++.-|..
T Consensus 172 ~~~~~~~~~fD~V~L-----D~p~P~~~l~~~~~~L-KpGG~lv~~~P~i 215 (324)
T d2b25a1 172 ATEDIKSLTFDAVAL-----DMLNPHVTLPVFYPHL-KHGGVCAVYVVNI 215 (324)
T ss_dssp CC-------EEEEEE-----CSSSTTTTHHHHGGGE-EEEEEEEEEESSH
T ss_pred cccccCCCCcceEee-----cCcCHHHHHHHHHHhc-cCCCEEEEEeCCH
Confidence 11 123457998875 4565544433344444 3899999887754
|
| >d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N5-glutamine methyltransferase, HemK domain: N5-glutamine methyltransferase, HemK species: Escherichia coli [TaxId: 562]
Probab=98.38 E-value=1.3e-06 Score=81.06 Aligned_cols=73 Identities=19% Similarity=0.348 Sum_probs=54.4
Q ss_pred CCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCC--CCCceeechhhhHhhhhcccCCCcccE
Q 015771 30 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK--DLPLIHSYNSIQALNKDISKSEREHDL 107 (400)
Q Consensus 30 ~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~--~~~~~~~~~~~~~l~~~l~~~~~~~DL 107 (400)
++.+|||+|||+|..+.+++...|. .+++++|.|+.+++.|++.++... ++.+++. ++...+ ...+||+
T Consensus 108 ~~~~vlDlGtGSG~I~i~la~~~p~--~~v~avDis~~Al~~A~~Na~~~~~~~v~~~~~-----d~~~~~--~~~~fDl 178 (274)
T d2b3ta1 108 QPCRILDLGTGTGAIALALASERPD--CEIIAVDRMPDAVSLAQRNAQHLAIKNIHILQS-----DWFSAL--AGQQFAM 178 (274)
T ss_dssp SCCEEEEETCTTSHHHHHHHHHCTT--SEEEEECSSHHHHHHHHHHHHHHTCCSEEEECC-----STTGGG--TTCCEEE
T ss_pred cccceeeeehhhhHHHHHHHhhCCc--ceeeeccchhHHHhHHHHHHHHhCcccceeeec-----cccccc--CCCceeE
Confidence 4678999999999999999888873 589999999999999999886532 2222222 222222 3468999
Q ss_pred Eeec
Q 015771 108 VIAS 111 (400)
Q Consensus 108 Vias 111 (400)
||++
T Consensus 179 IvsN 182 (274)
T d2b3ta1 179 IVSN 182 (274)
T ss_dssp EEEC
T ss_pred EEec
Confidence 9996
|
| >d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Chalcone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=98.35 E-value=2.9e-06 Score=77.22 Aligned_cols=109 Identities=15% Similarity=0.160 Sum_probs=74.3
Q ss_pred HHHHHHHHCCCCCC-CeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCCCCceeechhhhHhhh
Q 015771 18 VTESFARRLPGFSP-AKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNK 96 (400)
Q Consensus 18 vL~el~~rlp~~~p-~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~~~~~~~~~~~~~l~~ 96 (400)
...++.+..+.|.. .+|||+|||+|+.+.++.+.+|. .++++.|.. +.++ .......+... ..+..+
T Consensus 68 ~~~~l~~~~~~f~~~~~vlDiGGG~G~~~~~l~~~~P~--l~~~v~Dlp-~vi~-------~~~~~~ri~~~--~gd~~~ 135 (244)
T d1fp1d2 68 EMKRMLEIYTGFEGISTLVDVGGGSGRNLELIISKYPL--IKGINFDLP-QVIE-------NAPPLSGIEHV--GGDMFA 135 (244)
T ss_dssp HHHHHHHHCCTTTTCSEEEEETCTTSHHHHHHHHHCTT--CEEEEEECH-HHHT-------TCCCCTTEEEE--ECCTTT
T ss_pred HHHHHHHhcccccCCcEEEEecCCCcHHHHHHHHHCCC--CeEEEecch-hhhh-------ccCCCCCeEEe--cCCccc
Confidence 45567777776665 79999999999999999999984 478999973 3322 11111112110 011111
Q ss_pred hcccCCCcccEEeecccccCCCCHHHHHHHHHHHHhc--cCCeEEEEcC
Q 015771 97 DISKSEREHDLVIASYVLGEVPSLQDRITIVRQLWDL--TRDVLVLVEP 143 (400)
Q Consensus 97 ~l~~~~~~~DLVias~~L~eL~~~~~r~~~i~~Lw~~--~gG~LVlVE~ 143 (400)
.+ ...|+|+++++|+..+ .++...+++++.+. |||.|+|+|.
T Consensus 136 ~~----p~~D~~~l~~vLh~~~-de~~~~iL~~~~~aL~pgg~llI~e~ 179 (244)
T d1fp1d2 136 SV----PQGDAMILKAVCHNWS-DEKCIEFLSNCHKALSPNGKVIIVEF 179 (244)
T ss_dssp CC----CCEEEEEEESSGGGSC-HHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred cc----ccceEEEEehhhhhCC-HHHHHHHHHHHHHHcCCCcEEEEEEE
Confidence 22 2469999999999996 56667777777764 7999999984
|
| >d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 1, PRMT1 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.33 E-value=5.1e-07 Score=85.23 Aligned_cols=100 Identities=16% Similarity=0.207 Sum_probs=60.7
Q ss_pred CCCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCC--C-CCceeechhhhHhhhhcccCCCcc
Q 015771 29 FSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK--D-LPLIHSYNSIQALNKDISKSEREH 105 (400)
Q Consensus 29 ~~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~--~-~~~~~~~~~~~~l~~~l~~~~~~~ 105 (400)
++.++|||+|||+|..++.+++. ...+|++||.|+.+.. +++++.... + +.++.. +.. .++.+.+++
T Consensus 32 ~~~~~VLDiGcG~G~ls~~aa~~---Ga~~V~avd~s~~~~~-a~~~~~~n~~~~~v~~~~~-----~~~-~~~~~~~~~ 101 (316)
T d1oria_ 32 FKDKVVLDVGSGTGILCMFAAKA---GARKVIGIECSSISDY-AVKIVKANKLDHVVTIIKG-----KVE-EVELPVEKV 101 (316)
T ss_dssp HTTCEEEEETCTTSHHHHHHHHT---TCSEEEEEECSTTHHH-HHHHHHHTTCTTTEEEEES-----CTT-TCCCSSSCE
T ss_pred CCcCEEEEEecCCcHHHHHHHHh---CCCEEEEEcCcHHHhh-hhhHHHHhCCccccceEec-----cHH-Hccccccee
Confidence 45589999999999988777753 2358999999986644 444443221 1 222221 111 233455789
Q ss_pred cEEeecccccCCCCH---HHHHHHHHHHHhccCCeEE
Q 015771 106 DLVIASYVLGEVPSL---QDRITIVRQLWDLTRDVLV 139 (400)
Q Consensus 106 DLVias~~L~eL~~~---~~r~~~i~~Lw~~~gG~LV 139 (400)
|+|++..+.+.+... ..-...+.++++ |||.++
T Consensus 102 D~ivs~~~~~~l~~e~~~~~~l~~~~r~Lk-p~G~ii 137 (316)
T d1oria_ 102 DIIISEWMGYCLFYESMLNTVLHARDKWLA-PDGLIF 137 (316)
T ss_dssp EEEEECCCBBTBTBTCCHHHHHHHHHHHEE-EEEEEE
T ss_pred EEEeeeeeeeeeccHHHHHHHHHHHHhcCC-CCeEEE
Confidence 999987666665433 333344555553 788765
|
| >d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=98.32 E-value=7.4e-07 Score=79.78 Aligned_cols=97 Identities=15% Similarity=0.237 Sum_probs=68.9
Q ss_pred CCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCC--CCCceeechhhhHhhhhcccCCCcccEE
Q 015771 31 PAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK--DLPLIHSYNSIQALNKDISKSEREHDLV 108 (400)
Q Consensus 31 p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~--~~~~~~~~~~~~~l~~~l~~~~~~~DLV 108 (400)
..+|||+|||+|..+-.++...+ .+|+++|.++.+.+.|++.+.+.. |+.++.. +..... ....+||.|
T Consensus 79 g~~VLeIGsGsGY~taila~l~g---~~V~~ie~~~~l~~~a~~~l~~~g~~nv~~~~g-----d~~~g~-~~~~pfD~I 149 (215)
T d1jg1a_ 79 GMNILEVGTGSGWNAALISEIVK---TDVYTIERIPELVEFAKRNLERAGVKNVHVILG-----DGSKGF-PPKAPYDVI 149 (215)
T ss_dssp TCCEEEECCTTSHHHHHHHHHHC---SCEEEEESCHHHHHHHHHHHHHTTCCSEEEEES-----CGGGCC-GGGCCEEEE
T ss_pred cceEEEecCCCChhHHHHHHhhC---ceeEEEeccHHHHHHHHHHHHHcCCceeEEEEC-----ccccCC-cccCcceeE
Confidence 36999999999987766565443 469999999999999999987643 2222222 222222 245789999
Q ss_pred eecccccCCCCHHHHHHHHHHHHhccCCeEEEEcC
Q 015771 109 IASYVLGEVPSLQDRITIVRQLWDLTRDVLVLVEP 143 (400)
Q Consensus 109 ias~~L~eL~~~~~r~~~i~~Lw~~~gG~LVlVE~ 143 (400)
+++-++.++|. .++++| ++||.||+.-.
T Consensus 150 iv~~a~~~ip~-----~l~~qL--~~gGrLv~pv~ 177 (215)
T d1jg1a_ 150 IVTAGAPKIPE-----PLIEQL--KIGGKLIIPVG 177 (215)
T ss_dssp EECSBBSSCCH-----HHHHTE--EEEEEEEEEEC
T ss_pred EeecccccCCH-----HHHHhc--CCCCEEEEEEc
Confidence 99999999873 244444 47999997643
|
| >d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Streptococcus pneumoniae [TaxId: 1313]
Probab=98.27 E-value=1.7e-06 Score=76.65 Aligned_cols=104 Identities=11% Similarity=0.060 Sum_probs=67.2
Q ss_pred CeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCC--CCCCceeechhhhHhhhhcccCCCcccEEe
Q 015771 32 AKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGP--KDLPLIHSYNSIQALNKDISKSEREHDLVI 109 (400)
Q Consensus 32 ~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~--~~~~~~~~~~~~~~l~~~l~~~~~~~DLVi 109 (400)
..|||||||+|..+..++...|+ ..+++||.++.|+..|...+... .|+.++.... .++... .+...+|.|+
T Consensus 33 plvLdIGcG~G~~~~~lA~~~p~--~~~iGid~~~~~v~~a~~~~~~~~l~Ni~~~~~da--~~l~~~--~~~~~~~~i~ 106 (204)
T d1yzha1 33 PIHVEVGSGKGAFVSGMAKQNPD--INYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDG--SDLTDY--FEDGEIDRLY 106 (204)
T ss_dssp CEEEEESCTTSHHHHHHHHHCTT--SEEEEEESCHHHHHHHHHHHHHHCCSSEEEEECCS--SCGGGT--SCTTCCSEEE
T ss_pred CeEEEEeccCCHHHHHHHHHCCC--CceEEEeccHHHHHHHHHhhhhhccccceeeecCH--HHHhhh--ccCCceehhc
Confidence 36999999999999999998875 57999999999999887766532 3443333221 112222 2456789998
Q ss_pred ecccccCCCCHH--HH---HHHHHHHHh--ccCCeEEEE
Q 015771 110 ASYVLGEVPSLQ--DR---ITIVRQLWD--LTRDVLVLV 141 (400)
Q Consensus 110 as~~L~eL~~~~--~r---~~~i~~Lw~--~~gG~LVlV 141 (400)
+.+.--+..... .| ..++..+.+ ++||.|.|.
T Consensus 107 i~fPdPw~K~~h~krRl~~~~~l~~~~~~LkpgG~l~i~ 145 (204)
T d1yzha1 107 LNFSDPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFK 145 (204)
T ss_dssp EESCCCCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEE
T ss_pred ccccccccchhhhhhhhhHHHHHHHHHHhCCCCcEEEEE
Confidence 776544332111 11 234444443 289999886
|
| >d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein TTHA1280, middle and C-terminal domains species: Thermus thermophilus [TaxId: 274]
Probab=98.27 E-value=1.7e-06 Score=81.79 Aligned_cols=113 Identities=15% Similarity=0.149 Sum_probs=70.7
Q ss_pred CCCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCC--CCCceeechhhhHhhhhcccCCCccc
Q 015771 29 FSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK--DLPLIHSYNSIQALNKDISKSEREHD 106 (400)
Q Consensus 29 ~~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~--~~~~~~~~~~~~~l~~~l~~~~~~~D 106 (400)
.+..+|||++||+|..+.+++. ...+|++||.|+.+++.|+..++..+ +..++... ..++...+....++||
T Consensus 144 ~~g~rVLDl~~gtG~~s~~~a~----g~~~V~~vD~s~~al~~a~~n~~~ngl~~~~~i~~d--~~~~~~~~~~~~~~fD 217 (318)
T d1wxxa2 144 FRGERALDVFSYAGGFALHLAL----GFREVVAVDSSAEALRRAEENARLNGLGNVRVLEAN--AFDLLRRLEKEGERFD 217 (318)
T ss_dssp CCEEEEEEETCTTTHHHHHHHH----HEEEEEEEESCHHHHHHHHHHHHHTTCTTEEEEESC--HHHHHHHHHHTTCCEE
T ss_pred hCCCeeeccCCCCcHHHHHHHh----cCCcEEeecchHHHHHHHHHHHHHcCCCCcceeecc--HHHHhhhhHhhhcCCC
Confidence 3458999999999999888763 34689999999999999999886432 22222221 1122222333457899
Q ss_pred EEeecc---cccCCCCHH----HHHHHHHHHHhc--cCCeEEEEcCCCCCc
Q 015771 107 LVIASY---VLGEVPSLQ----DRITIVRQLWDL--TRDVLVLVEPGTPQG 148 (400)
Q Consensus 107 LVias~---~L~eL~~~~----~r~~~i~~Lw~~--~gG~LVlVE~Gtp~G 148 (400)
+|++.- .... .... .-..++...++. |||.||+........
T Consensus 218 ~Vi~DpP~~~~~~-~~~~~~~~~~~~l~~~a~~lLkpGG~Lv~~scs~~~~ 267 (318)
T d1wxxa2 218 LVVLDPPAFAKGK-KDVERAYRAYKEVNLRAIKLLKEGGILATASCSHHMT 267 (318)
T ss_dssp EEEECCCCSCCST-TSHHHHHHHHHHHHHHHHHTEEEEEEEEEEECCTTSC
T ss_pred EEEEcCCccccch-HHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeCCcccC
Confidence 999742 2111 1111 112455555554 899999987654333
|
| >d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=98.23 E-value=1.1e-06 Score=79.13 Aligned_cols=98 Identities=14% Similarity=0.223 Sum_probs=65.6
Q ss_pred CeEEEEccchhHHHHHHHHHCCC----CCcEEEEEeCCHHHHHHHHHhhcCC-------CCCCceeechhhhHhhhhccc
Q 015771 32 AKVLDFGAGTGSAFWALREVWPR----SLEKVNLVEPSQSMQRAGQSLMQGP-------KDLPLIHSYNSIQALNKDISK 100 (400)
Q Consensus 32 ~~VLDvG~G~Gt~~~Al~~~~~~----~~~~v~~vD~S~~ml~~a~~ll~~~-------~~~~~~~~~~~~~~l~~~l~~ 100 (400)
.+|||+|||+|-.+-.++...+. ...+|++||.++++.+.|++.+... .++.++.. +..... .
T Consensus 82 ~~VLeIGtGsGY~ta~la~l~g~~g~~~~~~V~~iE~~~~l~~~a~~~l~~~~~~~~~~~nv~~~~~-----d~~~~~-~ 155 (223)
T d1r18a_ 82 ARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVEG-----DGRKGY-P 155 (223)
T ss_dssp CEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEES-----CGGGCC-G
T ss_pred CeEEEecCCCCHHHHHHHHHhhhccCCcccEEEEEecCHHHHHHHHHhhhhcchhhcCccEEEEEec-----cccccc-c
Confidence 79999999999877666655431 1248999999999999998765321 12222221 122222 2
Q ss_pred CCCcccEEeecccccCCCCHHHHHHHHHHHHhccCCeEEEEc
Q 015771 101 SEREHDLVIASYVLGEVPSLQDRITIVRQLWDLTRDVLVLVE 142 (400)
Q Consensus 101 ~~~~~DLVias~~L~eL~~~~~r~~~i~~Lw~~~gG~LVlVE 142 (400)
...+||.|+++.++.++|. .++++| ++||.||+.-
T Consensus 156 ~~~~fD~Iiv~~a~~~~p~-----~l~~~L--k~gG~lV~pv 190 (223)
T d1r18a_ 156 PNAPYNAIHVGAAAPDTPT-----ELINQL--ASGGRLIVPV 190 (223)
T ss_dssp GGCSEEEEEECSCBSSCCH-----HHHHTE--EEEEEEEEEE
T ss_pred cccceeeEEEEeechhchH-----HHHHhc--CCCcEEEEEE
Confidence 3568999999999999873 233333 3799998753
|
| >d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Methyltransferase TTHA0928 species: Thermus thermophilus [TaxId: 274]
Probab=98.15 E-value=3.2e-06 Score=72.66 Aligned_cols=87 Identities=13% Similarity=0.087 Sum_probs=53.8
Q ss_pred HHHHHHHHCCCCCCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCCCCceeechhhhHhhhh
Q 015771 18 VTESFARRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKD 97 (400)
Q Consensus 18 vL~el~~rlp~~~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~~~~~~~~~~~~~l~~~ 97 (400)
+++-|..+++ .+.+|||+|||+|...+++.. ...+++++|.|+.+++.+++.++.......+.... .......
T Consensus 31 lf~~l~~~~~--~g~~vLDl~~G~G~~~i~a~~----~ga~vv~vD~~~~a~~~~~~N~~~~~~~~~v~~~~-~d~~~~~ 103 (171)
T d1ws6a1 31 LFDYLRLRYP--RRGRFLDPFAGSGAVGLEAAS----EGWEAVLVEKDPEAVRLLKENVRRTGLGARVVALP-VEVFLPE 103 (171)
T ss_dssp HHHHHHHHCT--TCCEEEEETCSSCHHHHHHHH----TTCEEEEECCCHHHHHHHHHHHHHHTCCCEEECSC-HHHHHHH
T ss_pred HHHHhhcccc--CCCeEEEeccccchhhhhhhh----ccchhhhcccCHHHHhhhhHHHHhhccccceeeee-hhccccc
Confidence 4445555543 347999999999998876664 23578999999999999998876432111111110 1111111
Q ss_pred cccCCCcccEEeec
Q 015771 98 ISKSEREHDLVIAS 111 (400)
Q Consensus 98 l~~~~~~~DLVias 111 (400)
......+||+|++.
T Consensus 104 ~~~~~~~fD~If~D 117 (171)
T d1ws6a1 104 AKAQGERFTVAFMA 117 (171)
T ss_dssp HHHTTCCEEEEEEC
T ss_pred ccccCCccceeEEc
Confidence 11234689999883
|
| >d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: COMT domain-containing protein 1, COMTD1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.11 E-value=3.5e-06 Score=75.42 Aligned_cols=115 Identities=17% Similarity=0.187 Sum_probs=70.9
Q ss_pred HHHHHHHHHHCCCCCCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCCCCceee--chhhhH
Q 015771 16 LLVTESFARRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHS--YNSIQA 93 (400)
Q Consensus 16 ~~vL~el~~rlp~~~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~~~~~~~--~~~~~~ 93 (400)
.+.|..|.+. .+|++||++|+|+|-.+++++...++ ..+++++|.++++.+.|+..++..+-...+.. ......
T Consensus 48 g~lL~~L~~~---~~~k~vLEiGt~~GyStl~~a~al~~-~g~i~tie~~~~~~~~A~~~~~~ag~~~~i~~~~Gda~e~ 123 (219)
T d2avda1 48 AQLLANLARL---IQAKKALDLGTFTGYSALALALALPA-DGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALET 123 (219)
T ss_dssp HHHHHHHHHH---TTCCEEEEECCTTSHHHHHHHTTSCT-TCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHH
T ss_pred HHHHHHHHHc---cCCCeEEEEechhhHHHHHHHHhCCC-CceEEEEeechhHHHHHHHHHHhcCccceEEEEEeehhhc
Confidence 3444444443 47899999999999998888877764 56999999999999999999875432222211 111111
Q ss_pred hhhhc-ccCCCcccEEeecccccCCCCHHHHHHHHHHHHhc--cCCeEEE
Q 015771 94 LNKDI-SKSEREHDLVIASYVLGEVPSLQDRITIVRQLWDL--TRDVLVL 140 (400)
Q Consensus 94 l~~~l-~~~~~~~DLVias~~L~eL~~~~~r~~~i~~Lw~~--~gG~LVl 140 (400)
+...+ .....+||+|..-.-=. .-...++.++++ +||.||+
T Consensus 124 l~~~~~~~~~~~fD~ifiD~dk~------~y~~~~~~~~~lL~~GGvii~ 167 (219)
T d2avda1 124 LDELLAAGEAGTFDVAVVDADKE------NCSAYYERCLQLLRPGGILAV 167 (219)
T ss_dssp HHHHHHTTCTTCEEEEEECSCST------THHHHHHHHHHHEEEEEEEEE
T ss_pred chhhhhhcccCCccEEEEeCCHH------HHHHHHHHHHHHhcCCcEEEE
Confidence 22111 12356899999865321 122333444433 6777664
|
| >d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methyltransferase SPy1538 species: Streptococcus pyogenes [TaxId: 1314]
Probab=98.08 E-value=3.2e-06 Score=71.15 Aligned_cols=79 Identities=23% Similarity=0.177 Sum_probs=51.4
Q ss_pred CCCCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCCCCceeechhhhHhhhhcccCCCcccE
Q 015771 28 GFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDISKSEREHDL 107 (400)
Q Consensus 28 ~~~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~~~~~~~~~~~~~l~~~l~~~~~~~DL 107 (400)
.++..+|||+|||+|+..+.++. ....+|++||.++.+++.+++.++...-...+... ..+....+....++||+
T Consensus 12 ~~~g~~vlDl~~GtG~~~iea~~---rga~~v~~ve~~~~a~~~~~~n~~~~~~~~~~~ii--~~D~~~~l~~~~~~fDi 86 (152)
T d2esra1 12 YFNGGRVLDLFAGSGGLAIEAVS---RGMSAAVLVEKNRKAQAIIQDNIIMTKAENRFTLL--KMEAERAIDCLTGRFDL 86 (152)
T ss_dssp CCCSCEEEEETCTTCHHHHHHHH---TTCCEEEEECCCHHHHHHHHHHHHTTTCGGGEEEE--CSCHHHHHHHBCSCEEE
T ss_pred hCCCCeEEEcCCccCHHHHHHHH---hCcceeeeehhchhhhhhhhhhhhhcccccchhhh--cccccccccccccccce
Confidence 46778999999999998876553 23469999999999999999988754211111110 01111112223567888
Q ss_pred Eeec
Q 015771 108 VIAS 111 (400)
Q Consensus 108 Vias 111 (400)
|++.
T Consensus 87 If~D 90 (152)
T d2esra1 87 VFLD 90 (152)
T ss_dssp EEEC
T ss_pred eEec
Confidence 8763
|
| >d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: MraW-like putative methyltransferases domain: TM0872, methyltransferase domain species: Thermotoga maritima [TaxId: 2336]
Probab=98.01 E-value=9.5e-06 Score=71.05 Aligned_cols=122 Identities=15% Similarity=0.158 Sum_probs=75.6
Q ss_pred HHHHHHHCCCCCCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCC-CCceeechhhhHhhhh
Q 015771 19 TESFARRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKD-LPLIHSYNSIQALNKD 97 (400)
Q Consensus 19 L~el~~rlp~~~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~-~~~~~~~~~~~~l~~~ 97 (400)
|.|+-..+..-....|||++||+|..+.++.+.++. .+++++|.++.|++.|+..++...+ +.+++..+ .++..-
T Consensus 12 l~evi~~l~~~~~~~~lD~t~G~Gghs~~il~~~~~--~~vi~~D~d~~~l~~a~~~l~~~~~r~~~~~~~f--~~~~~~ 87 (192)
T d1m6ya2 12 VREVIEFLKPEDEKIILDCTVGEGGHSRAILEHCPG--CRIIGIDVDSEVLRIAEEKLKEFSDRVSLFKVSY--READFL 87 (192)
T ss_dssp HHHHHHHHCCCTTCEEEETTCTTSHHHHHHHHHCTT--CEEEEEESCHHHHHHHHHHTGGGTTTEEEEECCG--GGHHHH
T ss_pred HHHHHHhhCCCCCCEEEEecCCCcHHHHHHHhcCCC--CeEEEeechHHHHHHHHHhhccccccccchhHHH--hhHHHH
Confidence 445555443334579999999999999999988863 6899999999999999999876532 33333221 112111
Q ss_pred c-ccCCCcccEEeec-----ccccCCC-CHHHHHHHHHHHHhc--cCCeEEEEcCC
Q 015771 98 I-SKSEREHDLVIAS-----YVLGEVP-SLQDRITIVRQLWDL--TRDVLVLVEPG 144 (400)
Q Consensus 98 l-~~~~~~~DLVias-----~~L~eL~-~~~~r~~~i~~Lw~~--~gG~LVlVE~G 144 (400)
+ ....+++|-|+.- +.|.... ........+...... +||.+++|...
T Consensus 88 ~~~~~~~~vdgIl~DlGvSs~Qld~~~r~~~~~~~~L~~a~~~Lk~gG~l~ii~f~ 143 (192)
T d1m6ya2 88 LKTLGIEKVDGILMDLGVSTYQLKGENRELENLKEFLKKAEDLLNPGGRIVVISFH 143 (192)
T ss_dssp HHHTTCSCEEEEEEECSCCHHHHHTSHTHHHHHHHHHHHGGGGEEEEEEEEEEESS
T ss_pred HHHcCCCCcceeeeccchhHhhhhhhhccchhHHHHHHHHHHhcCCCCeeeeeccc
Confidence 1 1123577777654 3332221 112233444444442 79999999753
|
| >d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein PH1915, middle and C-terminal domains species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=97.99 E-value=1.2e-05 Score=75.90 Aligned_cols=113 Identities=15% Similarity=0.048 Sum_probs=68.1
Q ss_pred CCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCCCC---ceeechhhhHhhhhcccCCCcccE
Q 015771 31 PAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLP---LIHSYNSIQALNKDISKSEREHDL 107 (400)
Q Consensus 31 p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~~~---~~~~~~~~~~l~~~l~~~~~~~DL 107 (400)
..+|||+|||+|..+.+++.. ...+|++||.|+.+++.++..+...+-.. ++... ..+....+.....+||+
T Consensus 146 g~~VLDl~~g~G~~si~~a~~---ga~~V~~vD~s~~al~~a~~N~~~ngl~~~~~~~~~d--~~~~~~~~~~~~~~fD~ 220 (324)
T d2as0a2 146 GDRVLDVFTYTGGFAIHAAIA---GADEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGS--AFEEMEKLQKKGEKFDI 220 (324)
T ss_dssp TCEEEETTCTTTHHHHHHHHT---TCSEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESC--HHHHHHHHHHTTCCEEE
T ss_pred CCeeecccCcccchhhhhhhc---CCcEEEeecCCHHHHHHHHHHHHHcCCCccceeeech--hhhhhHHHHhccCCCCc
Confidence 479999999999988876632 34589999999999999999886432111 11111 11111122234568999
Q ss_pred Eeecc---cccCCCCHHHH----HHHHHHHHhc--cCCeEEEEcCCCCCch
Q 015771 108 VIASY---VLGEVPSLQDR----ITIVRQLWDL--TRDVLVLVEPGTPQGS 149 (400)
Q Consensus 108 Vias~---~L~eL~~~~~r----~~~i~~Lw~~--~gG~LVlVE~Gtp~Gf 149 (400)
||+.- ..+.- ..... ..++....+. |||.||+.........
T Consensus 221 Vi~DpP~~~~~~~-~~~~~~~~y~~l~~~a~~ll~pGG~lv~~s~s~~~~~ 270 (324)
T d2as0a2 221 VVLDPPAFVQHEK-DLKAGLRAYFNVNFAGLNLVKDGGILVTCSCSQHVDL 270 (324)
T ss_dssp EEECCCCSCSSGG-GHHHHHHHHHHHHHHHHTTEEEEEEEEEEECCTTSCH
T ss_pred hhcCCccccCCHH-HHHHHHHHHHHHHHHHHHHcCCCcEEEEEeCCccCCH
Confidence 99832 21111 11111 1244444433 8999999877655544
|
| >d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: Catechol O-methyltransferase, COMT species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=97.98 E-value=1.2e-05 Score=71.59 Aligned_cols=50 Identities=18% Similarity=0.241 Sum_probs=43.0
Q ss_pred CCCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCC
Q 015771 29 FSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGP 79 (400)
Q Consensus 29 ~~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~ 79 (400)
.+|++|||+|||+|..+++++..++ ...+++++|.++.+.+.|+..++..
T Consensus 55 ~kpk~ILEiGt~~G~Sti~la~al~-~~g~v~sid~~~~~~~~a~~~~~~~ 104 (214)
T d2cl5a1 55 YSPSLVLELGAYCGYSAVRMARLLQ-PGARLLTMEMNPDYAAITQQMLNFA 104 (214)
T ss_dssp HCCSEEEEECCTTSHHHHHHHTTCC-TTCEEEEEESCHHHHHHHHHHHHHH
T ss_pred hCCCEEEEEccCchhHHHHHHHhCC-CccEEEEEeccHHHHHHHHHHHHHc
Confidence 3688999999999999888887775 3569999999999999999888653
|
| >d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=97.97 E-value=6.8e-05 Score=67.62 Aligned_cols=109 Identities=13% Similarity=0.230 Sum_probs=71.3
Q ss_pred HHHHHHHHCCCCC-CCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCCCCceeechhhhHhhh
Q 015771 18 VTESFARRLPGFS-PAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNK 96 (400)
Q Consensus 18 vL~el~~rlp~~~-p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~~~~~~~~~~~~~l~~ 96 (400)
....+....+.+. ..+|||+|||+|..+.++++.+|. .++++.|...- + +.....+.+... ..++..
T Consensus 68 ~~~~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~--l~~~v~Dlp~v-i-------~~~~~~~r~~~~--~~d~~~ 135 (243)
T d1kyza2 68 TMKKILETYTGFEGLKSLVDVGGGTGAVINTIVSKYPT--IKGINFDLPHV-I-------EDAPSYPGVEHV--GGDMFV 135 (243)
T ss_dssp HHHHHHHHCCTTSSCSEEEEETCTTSHHHHHHHHHCTT--SEEEEEECTTT-T-------TTCCCCTTEEEE--ECCTTT
T ss_pred HHHHHHHhcccccCCcEEEEecCCCcHHHHHHHHHCCC--CeEEEcccHHh-h-------hhcccCCceEEe--cccccc
Confidence 3445555555555 368999999999999999999984 48899998542 1 111111111110 011211
Q ss_pred hcccCCCcccEEeecccccCCCCHHHHHHHHHHHHhc--cCCeEEEEcC
Q 015771 97 DISKSEREHDLVIASYVLGEVPSLQDRITIVRQLWDL--TRDVLVLVEP 143 (400)
Q Consensus 97 ~l~~~~~~~DLVias~~L~eL~~~~~r~~~i~~Lw~~--~gG~LVlVE~ 143 (400)
.+ ...|+++..++|+..+ .++...+++++.+. +||.++|+|.
T Consensus 136 ~~----P~ad~~~l~~vlh~~~-d~~~~~iL~~~~~al~pgg~~li~d~ 179 (243)
T d1kyza2 136 SI----PKADAVFMKWICHDWS-DEHCLKFLKNCYEALPDNGKVIVAEC 179 (243)
T ss_dssp CC----CCCSCEECSSSSTTSC-HHHHHHHHHHHHHHCCSSSCEEEEEC
T ss_pred cC----CCcceEEEEEEeecCC-HHHHHHHHHHHHHhcCCCceEEEEEE
Confidence 22 2368889999999986 55666778887764 7999998875
|
| >d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Putative methyltransferase Atu0340 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=97.88 E-value=1.8e-05 Score=74.21 Aligned_cols=75 Identities=16% Similarity=0.151 Sum_probs=49.8
Q ss_pred CCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcC--CCC--CCceeechhhhHhhhhcccCCCcc
Q 015771 30 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQG--PKD--LPLIHSYNSIQALNKDISKSEREH 105 (400)
Q Consensus 30 ~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~--~~~--~~~~~~~~~~~~l~~~l~~~~~~~ 105 (400)
++.+|||+.||+|..+++++. ...+|++||.|..+++.|++.++. ..+ +.++... -...+.. ......+|
T Consensus 132 ~~~rVLdlf~~tG~~sl~aa~----~GA~V~~VD~s~~al~~a~~N~~ln~~~~~~~~~i~~D-~~~~l~~-~~~~~~~f 205 (309)
T d2igta1 132 RPLKVLNLFGYTGVASLVAAA----AGAEVTHVDASKKAIGWAKENQVLAGLEQAPIRWICED-AMKFIQR-EERRGSTY 205 (309)
T ss_dssp SCCEEEEETCTTCHHHHHHHH----TTCEEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSC-HHHHHHH-HHHHTCCB
T ss_pred CCCeEEEecCCCcHHHHHHHh----CCCeEEEEeChHHHHHHHHHhhhhhcccCCcEEEEeCC-HHHhHHH-HhhcCCCC
Confidence 457999999999999887764 345899999999999999987752 211 1222221 0111211 11234689
Q ss_pred cEEee
Q 015771 106 DLVIA 110 (400)
Q Consensus 106 DLVia 110 (400)
|+||+
T Consensus 206 D~Iil 210 (309)
T d2igta1 206 DIILT 210 (309)
T ss_dssp SEEEE
T ss_pred CEEEE
Confidence 99998
|
| >d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Isoflavone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=97.87 E-value=3.3e-05 Score=69.92 Aligned_cols=95 Identities=18% Similarity=0.334 Sum_probs=63.9
Q ss_pred CeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCCCCceeechhhhHhhhhcccCCCcccEEeec
Q 015771 32 AKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDISKSEREHDLVIAS 111 (400)
Q Consensus 32 ~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~~~~~~~~~~~~~l~~~l~~~~~~~DLVias 111 (400)
.+|||||||+|..+.++.+.+|. .++++.|.. +.++.+ .....+.++.. +... +...+|++++.
T Consensus 82 ~~vvDvGGG~G~~~~~l~~~~P~--l~~~v~Dlp-~vi~~~----~~~~rv~~~~g-----D~f~----~~p~aD~~~l~ 145 (244)
T d1fp2a2 82 ESIVDVGGGTGTTAKIICETFPK--LKCIVFDRP-QVVENL----SGSNNLTYVGG-----DMFT----SIPNADAVLLK 145 (244)
T ss_dssp SEEEEETCTTSHHHHHHHHHCTT--CEEEEEECH-HHHTTC----CCBTTEEEEEC-----CTTT----CCCCCSEEEEE
T ss_pred eEEEEecCCccHHHHHHHHhCCC--CeEEEecCH-HHHHhC----cccCceEEEec-----Cccc----CCCCCcEEEEE
Confidence 68999999999999999999984 489999984 332211 11111222111 1111 12368999999
Q ss_pred ccccCCCCHHHHHHHHHHHHhc--cC---CeEEEEcC
Q 015771 112 YVLGEVPSLQDRITIVRQLWDL--TR---DVLVLVEP 143 (400)
Q Consensus 112 ~~L~eL~~~~~r~~~i~~Lw~~--~g---G~LVlVE~ 143 (400)
++||..+ .++...+++++.+. +| |.++|+|.
T Consensus 146 ~vLHdw~-d~~~~~iL~~~~~al~pgg~~~~lli~e~ 181 (244)
T d1fp2a2 146 YILHNWT-DKDCLRILKKCKEAVTNDGKRGKVTIIDM 181 (244)
T ss_dssp SCGGGSC-HHHHHHHHHHHHHHHSGGGCCCEEEEEEC
T ss_pred eecccCC-hHHHHHHHHHHHHHcCcccCCcEEEEEEe
Confidence 9999997 56666777776653 55 78888875
|
| >d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: Caffeoyl-CoA O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=97.80 E-value=3.8e-05 Score=68.88 Aligned_cols=106 Identities=13% Similarity=0.109 Sum_probs=66.3
Q ss_pred CCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCCCCceee--chhhhHhhhhc--ccCCCcc
Q 015771 30 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHS--YNSIQALNKDI--SKSEREH 105 (400)
Q Consensus 30 ~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~~~~~~~--~~~~~~l~~~l--~~~~~~~ 105 (400)
+|++||++|+++|-.++.+++.+++ ..+++.+|.+++..+.|+..++..+....+.. ......+..-+ ....++|
T Consensus 59 ~~k~iLEiGT~~GyStl~la~al~~-~g~v~tie~~~~~~~~A~~~~~~~g~~~~i~~~~g~a~~~L~~l~~~~~~~~~f 137 (227)
T d1susa1 59 NAKNTMEIGVYTGYSLLATALAIPE-DGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPVLDEMIKDEKNHGSY 137 (227)
T ss_dssp TCCEEEEECCGGGHHHHHHHHHSCT-TCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHCGGGTTCB
T ss_pred CCCcEEEecchhhhhHHHHHhhCCC-CcEEEEEeccchhHHHHHHHHHHhccccceeeeehHHHHHHHHHHhccccCCce
Confidence 6899999999999988888888874 57999999999999999999875432221111 11111122111 1124689
Q ss_pred cEEeecccccCCCCHHHHHHHHHHHHhccCCeEEE
Q 015771 106 DLVIASYVLGEVPSLQDRITIVRQLWDLTRDVLVL 140 (400)
Q Consensus 106 DLVias~~L~eL~~~~~r~~~i~~Lw~~~gG~LVl 140 (400)
|+|+.-.-= .....-.+.+..+++ +||.||+
T Consensus 138 D~iFiDa~k---~~y~~~~e~~~~ll~-~gGiii~ 168 (227)
T d1susa1 138 DFIFVDADK---DNYLNYHKRLIDLVK-VGGVIGY 168 (227)
T ss_dssp SEEEECSCS---TTHHHHHHHHHHHBC-TTCCEEE
T ss_pred eEEEeccch---hhhHHHHHHHHhhcC-CCcEEEE
Confidence 999986421 112222233334442 6777775
|
| >d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain containing protein METT10D {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Methyltransferase 10 domain domain: Methyltransferase 10 domain containing protein METT10D species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.80 E-value=1.1e-05 Score=73.53 Aligned_cols=82 Identities=11% Similarity=0.006 Sum_probs=54.3
Q ss_pred CCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCCCC---ceeechhhhHhhhhc-ccCCCccc
Q 015771 31 PAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLP---LIHSYNSIQALNKDI-SKSEREHD 106 (400)
Q Consensus 31 p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~~~---~~~~~~~~~~l~~~l-~~~~~~~D 106 (400)
..+|||+|||+|.....++..++ ..+++++|.|+.+++.|++.++...-.. .++.. ....+...+ ....++||
T Consensus 62 ~~~~LDiGtGsg~I~~~l~~~~~--~~~~~~~Di~~~al~~A~~N~~~n~l~~~~~~~~~~-~~~~~~~~~~~~~~~~fD 138 (250)
T d2h00a1 62 LRRGIDIGTGASCIYPLLGATLN--GWYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVP-QKTLLMDALKEESEIIYD 138 (250)
T ss_dssp CCEEEEESCTTTTHHHHHHHHHH--CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECC-TTCSSTTTSTTCCSCCBS
T ss_pred cceEEEeCCCchHHHHHHHHhCC--CccccceecCHHHHHHHHHHHHHhCCCcceeeeeec-cHHhhhhhhhhcccCcee
Confidence 46899999999999888877765 3589999999999999999986532111 11111 001111111 12356899
Q ss_pred EEeeccccc
Q 015771 107 LVIASYVLG 115 (400)
Q Consensus 107 LVias~~L~ 115 (400)
+|||+-=..
T Consensus 139 ~ivsNPPY~ 147 (250)
T d2h00a1 139 FCMCNPPFF 147 (250)
T ss_dssp EEEECCCCC
T ss_pred EEEecCccc
Confidence 999975443
|
| >d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein SMu776, middle and C-terminal domains species: Streptococcus mutans [TaxId: 1309]
Probab=97.74 E-value=6.1e-05 Score=70.80 Aligned_cols=114 Identities=12% Similarity=0.098 Sum_probs=68.7
Q ss_pred CCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCC----CCCceeechhhhHhhhhcccCCCccc
Q 015771 31 PAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK----DLPLIHSYNSIQALNKDISKSEREHD 106 (400)
Q Consensus 31 p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~----~~~~~~~~~~~~~l~~~l~~~~~~~D 106 (400)
+.+|||+.||+|+.+.+++. ....+|++||.|+.+++.++..++... +..++.... ...+. .+.....+||
T Consensus 145 g~~VLdlf~~~G~~sl~aa~---~ga~~V~~vD~s~~a~~~a~~N~~~n~l~~~~~~~i~~d~-~~~l~-~~~~~~~~fD 219 (317)
T d2b78a2 145 GKTVLNLFSYTAAFSVAAAM---GGAMATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDV-FDYFK-YARRHHLTYD 219 (317)
T ss_dssp TCEEEEETCTTTHHHHHHHH---TTBSEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCH-HHHHH-HHHHTTCCEE
T ss_pred CCceeecCCCCcHHHHHHHh---CCCceEEEecCCHHHHHHHHHHHHHhcccCcceEEEEccH-HHHHH-HHHhhcCCCC
Confidence 47999999999999876553 245689999999999999999885321 111222210 11111 1222346899
Q ss_pred EEeec---cc--ccCCCCHH-HHHHHHHHHHhc--cCCeEEEEcCCCCCch
Q 015771 107 LVIAS---YV--LGEVPSLQ-DRITIVRQLWDL--TRDVLVLVEPGTPQGS 149 (400)
Q Consensus 107 LVias---~~--L~eL~~~~-~r~~~i~~Lw~~--~gG~LVlVE~Gtp~Gf 149 (400)
+||+- +. -..+.+.. .-.+++...++. |||.|++.-.......
T Consensus 220 ~Ii~DPP~f~~~~~~~~~~~~~~~~L~~~a~~ll~pgG~l~~~scs~~~~~ 270 (317)
T d2b78a2 220 IIIIDPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIASTNAANMTV 270 (317)
T ss_dssp EEEECCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEECCTTSCH
T ss_pred EEEEcChhhccchhHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeCCccCCH
Confidence 99973 21 11222211 223455555554 8999999877544444
|
| >d2fpoa1 c.66.1.46 (A:10-192) Methylase YhhF {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Methylase YhhF species: Escherichia coli [TaxId: 562]
Probab=97.70 E-value=7.7e-05 Score=64.33 Aligned_cols=83 Identities=17% Similarity=0.176 Sum_probs=54.6
Q ss_pred HHHHHHHHCCCCCCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCC--CCCceeechhhhHhh
Q 015771 18 VTESFARRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK--DLPLIHSYNSIQALN 95 (400)
Q Consensus 18 vL~el~~rlp~~~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~--~~~~~~~~~~~~~l~ 95 (400)
+++-|...+ ...+|||++||+|+..+.+.. .....|++||.|..+++.+++.++... +...+.. +..
T Consensus 34 lfn~l~~~~---~~~~vLDlfaGsG~~gieals---rGa~~v~~VE~~~~a~~~~k~N~~~~~~~~~~ii~~-----d~~ 102 (183)
T d2fpoa1 34 LFNWLAPVI---VDAQCLDCFAGSGALGLEALS---RYAAGATLIEMDRAVSQQLIKNLATLKAGNARVVNS-----NAM 102 (183)
T ss_dssp HHHHHHHHH---TTCEEEETTCTTCHHHHHHHH---TTCSEEEEECSCHHHHHHHHHHHHHTTCCSEEEECS-----CHH
T ss_pred HHhhhhccc---chhhhhhhhccccceeeeEEe---cCcceeEEEEEeechhhHHHHHHhhccccceeeeee-----ccc
Confidence 444444443 347999999999999886553 245689999999999999998876432 2112211 111
Q ss_pred hhcccCCCcccEEeec
Q 015771 96 KDISKSEREHDLVIAS 111 (400)
Q Consensus 96 ~~l~~~~~~~DLVias 111 (400)
..+.....+||+|++-
T Consensus 103 ~~l~~~~~~fDlIf~D 118 (183)
T d2fpoa1 103 SFLAQKGTPHNIVFVD 118 (183)
T ss_dssp HHHSSCCCCEEEEEEC
T ss_pred ccccccccccCEEEEc
Confidence 1223345689999994
|
| >d2f8la1 c.66.1.45 (A:2-329) Hypothetical protein Lmo1582 {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: Hypothetical protein Lmo1582 species: Listeria monocytogenes [TaxId: 1639]
Probab=97.64 E-value=5.7e-05 Score=70.83 Aligned_cols=125 Identities=15% Similarity=0.137 Sum_probs=75.9
Q ss_pred CCCeEEEEccchhHHHHHHHHHCCC---CCcEEEEEeCCHHHHHHHHHhhcCCCC-CCceeechhhhHhhhhcccCCCcc
Q 015771 30 SPAKVLDFGAGTGSAFWALREVWPR---SLEKVNLVEPSQSMQRAGQSLMQGPKD-LPLIHSYNSIQALNKDISKSEREH 105 (400)
Q Consensus 30 ~p~~VLDvG~G~Gt~~~Al~~~~~~---~~~~v~~vD~S~~ml~~a~~ll~~~~~-~~~~~~~~~~~~l~~~l~~~~~~~ 105 (400)
.+.+|||.|||+|..+.++.+.+.. ....++++|.++.++++|+..+.-... ....... .+. .....+|
T Consensus 117 ~~~~vlDp~~GsG~~l~~~~~~l~~~~~~~~~~~g~di~~~~~~~a~~~~~~~~~~~~~~~~d----~~~---~~~~~~f 189 (328)
T d2f8la1 117 KNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQKMTLLHQD----GLA---NLLVDPV 189 (328)
T ss_dssp SEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTCCCEEEESC----TTS---CCCCCCE
T ss_pred CCCEEEeCCCCcchhHHHHHHHHHhccCccceEEEecccHHHHHHHHHHHHHhhhhhhhhccc----ccc---ccccccc
Confidence 4468999999999999887765432 234799999999999998876642211 1111110 011 1235689
Q ss_pred cEEeecccccCCCCHH---------------HHHHHHHHHHhc--cCCeEEEEcCCCCCchHHHHHHHHHHHH
Q 015771 106 DLVIASYVLGEVPSLQ---------------DRITIVRQLWDL--TRDVLVLVEPGTPQGSSIISQMRSHILW 161 (400)
Q Consensus 106 DLVias~~L~eL~~~~---------------~r~~~i~~Lw~~--~gG~LVlVE~Gtp~Gf~~I~~aR~~lL~ 161 (400)
|+||+.--.+...... .-..++...++. ++|.+++|-|.+-.....-..+|+.|++
T Consensus 190 D~vi~NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G~~~~I~p~~~l~~~~~~~lR~~L~~ 262 (328)
T d2f8la1 190 DVVISDLPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFLVPDAMFGTSDFAKVDKFIKK 262 (328)
T ss_dssp EEEEEECCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEEEEGGGGGSTTHHHHHHHHHH
T ss_pred cccccCCCCCCCccchhhhhcchhcccCcchHHHHHHHHHHHhcCCCCceEEEecCccccCchhHHHHHHHHh
Confidence 9999974332211111 112346666554 7999988877543222234556999884
|
| >d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N5-glutamine methyltransferase, HemK domain: N5-glutamine methyltransferase, HemK species: Thermotoga maritima [TaxId: 2336]
Probab=97.63 E-value=4.2e-05 Score=70.38 Aligned_cols=74 Identities=9% Similarity=0.104 Sum_probs=51.2
Q ss_pred CCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCCCC--ceeechhhhHhhhhcccCCCcccEE
Q 015771 31 PAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLP--LIHSYNSIQALNKDISKSEREHDLV 108 (400)
Q Consensus 31 p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~~~--~~~~~~~~~~l~~~l~~~~~~~DLV 108 (400)
+.+|||+|||+|..+.+++. ++ ..+|+++|.|+.+++.|++.++...-.. .+... ++...+....++||+|
T Consensus 111 ~~~vld~g~GsG~i~~~la~-~~--~~~v~a~Dis~~Al~~A~~Na~~~~~~~~~~i~~~----~~~~~~~~~~~~fDlI 183 (271)
T d1nv8a_ 111 IKTVADIGTGSGAIGVSVAK-FS--DAIVFATDVSSKAVEIARKNAERHGVSDRFFVRKG----EFLEPFKEKFASIEMI 183 (271)
T ss_dssp CCEEEEESCTTSHHHHHHHH-HS--SCEEEEEESCHHHHHHHHHHHHHTTCTTSEEEEES----STTGGGGGGTTTCCEE
T ss_pred ccEEEEeeeeeehhhhhhhh-cc--cceeeechhhhhHHHHHHHHHHHcCCCceeEEeec----ccccccccccCcccEE
Confidence 46899999999998888774 44 3589999999999999999887543211 11111 1211222234689999
Q ss_pred eec
Q 015771 109 IAS 111 (400)
Q Consensus 109 ias 111 (400)
|++
T Consensus 184 VsN 186 (271)
T d1nv8a_ 184 LSN 186 (271)
T ss_dssp EEC
T ss_pred EEc
Confidence 986
|
| >d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Met-10+ protein-like domain: Hypothetical protein PH0793 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=97.55 E-value=2.4e-05 Score=71.55 Aligned_cols=98 Identities=16% Similarity=0.090 Sum_probs=58.9
Q ss_pred CCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCCCCceeechhhhHhhhhcccCCCcccEEee
Q 015771 31 PAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDISKSEREHDLVIA 110 (400)
Q Consensus 31 p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~~~~~~~~~~~~~l~~~l~~~~~~~DLVia 110 (400)
+.+|||+|||+|..++.++.. + ..+|+++|.|+.+++.++..++..+-...+... ..+.. .+. ....||.|++
T Consensus 108 g~~VlD~~aG~G~~~l~~a~~-~--~~~V~avd~n~~a~~~~~~N~~~n~l~~~v~~~--~~D~~-~~~-~~~~~D~Ii~ 180 (260)
T d2frna1 108 DELVVDMFAGIGHLSLPIAVY-G--KAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAY--NMDNR-DFP-GENIADRILM 180 (260)
T ss_dssp TCEEEETTCTTTTTHHHHHHH-T--CCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEE--CSCTT-TCC-CCSCEEEEEE
T ss_pred ccEEEECcceEcHHHHHHHHh-C--CcEEEEecCCHHHHHHHHHHHHHhCCCceEEEE--EcchH-Hhc-cCCCCCEEEE
Confidence 479999999999988877654 2 358999999999999999887643211112110 11121 122 3467999987
Q ss_pred cccccCCCCHHHHHHHHHHHHhccCCeEEE
Q 015771 111 SYVLGEVPSLQDRITIVRQLWDLTRDVLVL 140 (400)
Q Consensus 111 s~~L~eL~~~~~r~~~i~~Lw~~~gG~LVl 140 (400)
..- +...+-.....+++ ++||.|.+
T Consensus 181 ~~p----~~~~~~l~~a~~~l-~~gG~lh~ 205 (260)
T d2frna1 181 GYV----VRTHEFIPKALSIA-KDGAIIHY 205 (260)
T ss_dssp CCC----SSGGGGHHHHHHHE-EEEEEEEE
T ss_pred CCC----CchHHHHHHHHhhc-CCCCEEEE
Confidence 532 11222222222333 37888754
|
| >d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thermus thermophilus [TaxId: 274]
Probab=97.41 E-value=7.9e-05 Score=69.85 Aligned_cols=46 Identities=22% Similarity=0.362 Sum_probs=39.1
Q ss_pred CCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhc
Q 015771 30 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQ 77 (400)
Q Consensus 30 ~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~ 77 (400)
.|++||.+|.|.|..+..+.... ...++++||+++.++++|++.+.
T Consensus 77 ~pk~VLiiG~G~G~~~~~ll~~~--~~~~v~~VEiD~~Vi~~a~~~f~ 122 (312)
T d1uira_ 77 EPKRVLIVGGGEGATLREVLKHP--TVEKAVMVDIDGELVEVAKRHMP 122 (312)
T ss_dssp CCCEEEEEECTTSHHHHHHTTST--TCCEEEEEESCHHHHHHHHHHCH
T ss_pred CcceEEEeCCCchHHHHHHHhcC--CcceEEEecCCHHHHHHHHhcCc
Confidence 57899999999999988776543 35789999999999999998763
|
| >d2fhpa1 c.66.1.46 (A:1-182) Putative methylase EF2452 {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methylase EF2452 species: Enterococcus faecalis [TaxId: 1351]
Probab=97.39 E-value=8.7e-05 Score=64.02 Aligned_cols=79 Identities=18% Similarity=0.208 Sum_probs=51.4
Q ss_pred CCCCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCC---CCceeechhhhHhhhhcccCCCc
Q 015771 28 GFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKD---LPLIHSYNSIQALNKDISKSERE 104 (400)
Q Consensus 28 ~~~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~---~~~~~~~~~~~~l~~~l~~~~~~ 104 (400)
.+...+|||++||+|+..+.++. ....+|++||.|..+++.+++.++.... ...+... ....+. .+.....+
T Consensus 39 ~~~~~~vLDlfaGsG~~g~ea~s---rGa~~v~~ve~~~~a~~~~~~N~~~~~~~~~~~i~~~D-~~~~l~-~~~~~~~~ 113 (182)
T d2fhpa1 39 YFDGGMALDLYSGSGGLAIEAVS---RGMDKSICIEKNFAALKVIKENIAITKEPEKFEVRKMD-ANRALE-QFYEEKLQ 113 (182)
T ss_dssp CCSSCEEEETTCTTCHHHHHHHH---TTCSEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESC-HHHHHH-HHHHTTCC
T ss_pred hcCCCEEEEcccccccccceeee---cchhHHHHHHHHHHHHHHHHHHhhhhhccccccccccc-chhhhh-hhcccCCC
Confidence 35668999999999998886553 2456899999999999999988764321 1112211 011121 11123458
Q ss_pred ccEEeec
Q 015771 105 HDLVIAS 111 (400)
Q Consensus 105 ~DLVias 111 (400)
||+|++-
T Consensus 114 fDlIflD 120 (182)
T d2fhpa1 114 FDLVLLD 120 (182)
T ss_dssp EEEEEEC
T ss_pred cceEEec
Confidence 9999874
|
| >d1qama_ c.66.1.24 (A:) rRNA adenine dimethylase {Bacillus subtilis, Ermc' [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: rRNA adenine dimethylase species: Bacillus subtilis, Ermc' [TaxId: 1423]
Probab=97.29 E-value=0.00036 Score=62.57 Aligned_cols=65 Identities=9% Similarity=0.201 Sum_probs=48.9
Q ss_pred HHHHHHHHCCCCCCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCCCCcee
Q 015771 18 VTESFARRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIH 86 (400)
Q Consensus 18 vL~el~~rlp~~~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~~~~~~ 86 (400)
++..+.+...--...+|||+|||+|+.+..+.+. ..++++||.++.|.+..+..+.+..++..++
T Consensus 9 i~~~iv~~~~~~~~d~VlEIGpG~G~LT~~Ll~~----~~~v~avE~D~~l~~~l~~~~~~~~n~~i~~ 73 (235)
T d1qama_ 9 NIDKIMTNIRLNEHDNIFEIGSGKGHFTLELVQR----CNFVTAIEIDHKLCKTTENKLVDHDNFQVLN 73 (235)
T ss_dssp HHHHHHTTCCCCTTCEEEEECCTTSHHHHHHHHH----SSEEEEECSCHHHHHHHHHHTTTCCSEEEEC
T ss_pred HHHHHHHhcCCCCCCeEEEECCCchHHHHHHHhC----cCceEEEeeccchHHHHHHHhhcccchhhhh
Confidence 4455555443334579999999999999998864 3589999999999999998876655554444
|
| >d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Caenorhabditis elegans [TaxId: 6239]
Probab=97.24 E-value=0.00044 Score=64.49 Aligned_cols=122 Identities=16% Similarity=0.217 Sum_probs=68.9
Q ss_pred CCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCC---CCceeechhhhHhhhhcccCCCccc
Q 015771 30 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKD---LPLIHSYNSIQALNKDISKSEREHD 106 (400)
Q Consensus 30 ~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~---~~~~~~~~~~~~l~~~l~~~~~~~D 106 (400)
.|++||-+|.|.|..+..+.... ...++++||+++.+++++++-+..... -|.+... .++....+....++||
T Consensus 106 ~pk~VLIiGgG~G~~~rellk~~--~v~~v~~VEID~~Vv~~a~~~~~~~~~~~~dprv~i~--i~Da~~~l~~~~~~yD 181 (312)
T d2b2ca1 106 DPKRVLIIGGGDGGILREVLKHE--SVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLF--CGDGFEFLKNHKNEFD 181 (312)
T ss_dssp SCCEEEEESCTTSHHHHHHTTCT--TCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEE--CSCHHHHHHHCTTCEE
T ss_pred CCCeEEEeCCCchHHHHHHHHcC--CcceEEEEcccHHHHHHHHhhchhhccccCCCCeEEE--EchHHHHHHhCCCCCC
Confidence 57899999999999988877533 357999999999999999998754321 1222111 1111111222456899
Q ss_pred EEeecccccCCCCHH-----HHHHHHHHHHhccCCeEEEEcCCCCCc-hHHHHHHHHH
Q 015771 107 LVIASYVLGEVPSLQ-----DRITIVRQLWDLTRDVLVLVEPGTPQG-SSIISQMRSH 158 (400)
Q Consensus 107 LVias~~L~eL~~~~-----~r~~~i~~Lw~~~gG~LVlVE~Gtp~G-f~~I~~aR~~ 158 (400)
+||+--.-. ..... +-.+.+++.++ ++|++|.= -+.+.- -+.+......
T Consensus 182 vII~D~~dp-~~~~~~L~t~eFy~~~~~~L~-~~Gi~v~q-~~s~~~~~~~~~~i~~~ 236 (312)
T d2b2ca1 182 VIITDSSDP-VGPAESLFGQSYYELLRDALK-EDGILSSQ-GESVWLHLPLIAHLVAF 236 (312)
T ss_dssp EEEECCC--------------HHHHHHHHEE-EEEEEEEE-CCCTTTCHHHHHHHHHH
T ss_pred EEEEcCCCC-CCcchhhhhHHHHHHHHhhcC-CCcEEEEe-cCChHHhHHHHHHHHHH
Confidence 999753211 11011 11233334432 78988865 333332 2334434443
|
| >d2ih2a1 c.66.1.27 (A:21-243) DNA methylase TaqI, N-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: DNA methylase TaqI, N-terminal domain domain: DNA methylase TaqI, N-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=97.24 E-value=0.00012 Score=63.88 Aligned_cols=124 Identities=18% Similarity=0.066 Sum_probs=70.2
Q ss_pred HHHCCCCCCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCCCCceeechhhhHhhhhcccCC
Q 015771 23 ARRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDISKSE 102 (400)
Q Consensus 23 ~~rlp~~~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~~~~~~~~~~~~~l~~~l~~~~ 102 (400)
...+...++.+|||.|||+|..+.++.+..+ ....++++|.++.++.+++.. ..+... .+. ....
T Consensus 12 ~~l~~~~~~~~IlDp~~G~G~fl~~~~~~~~-~~~~i~g~ei~~~~~~~~~~~-------~~~~~~----~~~---~~~~ 76 (223)
T d2ih2a1 12 VSLAEAPRGGRVLEPACAHGPFLRAFREAHG-TAYRFVGVEIDPKALDLPPWA-------EGILAD----FLL---WEPG 76 (223)
T ss_dssp HHHCCCCTTCEEEEETCTTCHHHHHHHHHHC-SCSEEEEEESCTTTCCCCTTE-------EEEESC----GGG---CCCS
T ss_pred HHhcCCCCcCEEEECCCchHHHHHHHHHhcc-ccceEEeeecCHHHHhhcccc-------eeeeee----hhc---cccc
Confidence 3334334567999999999999988887765 356899999987654332110 011111 011 1234
Q ss_pred CcccEEeecccccCCCC---------HH-----------------HHHHHHHHHHhc--cCCeEEEEcCCCCCchHHHHH
Q 015771 103 REHDLVIASYVLGEVPS---------LQ-----------------DRITIVRQLWDL--TRDVLVLVEPGTPQGSSIISQ 154 (400)
Q Consensus 103 ~~~DLVias~~L~eL~~---------~~-----------------~r~~~i~~Lw~~--~gG~LVlVE~Gtp~Gf~~I~~ 154 (400)
.+||+|++..-...... .. .-..++...++. +||.+++|-|..-.....-..
T Consensus 77 ~~fd~ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~al~~lk~~G~~~~I~p~~~l~~~~~~~ 156 (223)
T d2ih2a1 77 EAFDLILGNPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVFVVPATWLVLEDFAL 156 (223)
T ss_dssp SCEEEEEECCCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEEEEEGGGGTCGGGHH
T ss_pred cccceecccCccccccccccccchhhhhhhhhhhhccccCCCcchHHHHHHHHHHHhcccCCceEEEEeeeeccCcchHH
Confidence 67999988654332110 00 011233444433 799999997643322223356
Q ss_pred HHHHHHH
Q 015771 155 MRSHILW 161 (400)
Q Consensus 155 aR~~lL~ 161 (400)
+|++|++
T Consensus 157 lR~~l~~ 163 (223)
T d2ih2a1 157 LREFLAR 163 (223)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 6888874
|
| >d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thermotoga maritima [TaxId: 2336]
Probab=97.19 E-value=0.00043 Score=64.12 Aligned_cols=111 Identities=21% Similarity=0.225 Sum_probs=65.1
Q ss_pred CCCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCC---CCCceeechhhhHhhhhcccCCCcc
Q 015771 29 FSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK---DLPLIHSYNSIQALNKDISKSEREH 105 (400)
Q Consensus 29 ~~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~---~~~~~~~~~~~~~l~~~l~~~~~~~ 105 (400)
-.|++||-+|.|.|..+..+.... ...++++||+++.+++++++-+.... +-+.++.. .++....+....++|
T Consensus 88 ~~pk~VLiiGgG~G~~~r~~l~~~--~~~~i~~VEIDp~Vi~~a~~~~~~~~~~~~d~rv~v~--~~Da~~~l~~~~~~y 163 (295)
T d1inla_ 88 PNPKKVLIIGGGDGGTLREVLKHD--SVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIV--IANGAEYVRKFKNEF 163 (295)
T ss_dssp SSCCEEEEEECTTCHHHHHHTTST--TCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEE--ESCHHHHGGGCSSCE
T ss_pred CCCceEEEecCCchHHHHHHHhcC--CCceEEEecCCHHHHHHHHHHHHhhcccccCCCcEEE--hhhHHHHHhcCCCCC
Confidence 358999999999999887776543 35789999999999999998764211 11222111 112222233345689
Q ss_pred cEEeecccc------cCCCCHHHHHHHHHHHHhccCCeEEEEcCCCC
Q 015771 106 DLVIASYVL------GEVPSLQDRITIVRQLWDLTRDVLVLVEPGTP 146 (400)
Q Consensus 106 DLVias~~L------~eL~~~~~r~~~i~~Lw~~~gG~LVlVE~Gtp 146 (400)
|+||+--.- ..|-+ .+-.+.+++.++ ++|++|.= -+.|
T Consensus 164 DvIi~D~~dp~~~~~~~L~t-~efy~~~~~~L~-~~Gi~v~q-~~sp 207 (295)
T d1inla_ 164 DVIIIDSTDPTAGQGGHLFT-EEFYQACYDALK-EDGVFSAE-TEDP 207 (295)
T ss_dssp EEEEEEC----------CCS-HHHHHHHHHHEE-EEEEEEEE-CCCT
T ss_pred CEEEEcCCCCCcCchhhhcc-HHHHHHHHhhcC-CCcEEEEe-cCCh
Confidence 999974321 12221 122334444442 78888754 3344
|
| >d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Putative spermidine synthetase PF0127 (SpeE) species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=97.15 E-value=0.00042 Score=63.56 Aligned_cols=46 Identities=22% Similarity=0.407 Sum_probs=38.9
Q ss_pred CCCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhc
Q 015771 29 FSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQ 77 (400)
Q Consensus 29 ~~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~ 77 (400)
-+|.+||-+|+|.|..+..+.. ++ ..++++||+++.++++|+..+.
T Consensus 71 ~~p~~vLiiG~G~G~~~~~~l~-~~--~~~v~~VEiD~~Vi~~a~~~f~ 116 (276)
T d1mjfa_ 71 PKPKRVLVIGGGDGGTVREVLQ-HD--VDEVIMVEIDEDVIMVSKDLIK 116 (276)
T ss_dssp SCCCEEEEEECTTSHHHHHHTT-SC--CSEEEEEESCHHHHHHHHHHTC
T ss_pred CCCceEEEecCCchHHHHHHHH-hC--CceEEEecCCHHHHHHHHHhhh
Confidence 3578999999999999887764 43 3589999999999999998774
|
| >d1uwva2 c.66.1.40 (A:75-432) rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: (Uracil-5-)-methyltransferase domain: rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain species: Escherichia coli [TaxId: 562]
Probab=97.08 E-value=0.00033 Score=66.13 Aligned_cols=129 Identities=18% Similarity=0.156 Sum_probs=76.7
Q ss_pred HhHHHHHHHHHHHHHHCCCCCCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCC--CCCCceee
Q 015771 10 ECLLFTLLVTESFARRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGP--KDLPLIHS 87 (400)
Q Consensus 10 ~~Ya~~~~vL~el~~rlp~~~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~--~~~~~~~~ 87 (400)
.|-......++.+.+.+..-+..+|||+-||.|+.+..+++ ...+|++||.++++++.|+..++.. .|..++..
T Consensus 192 ~N~~~~e~l~~~v~~~~~~~~~~~vlDLycG~G~fsl~La~----~~~~V~gvE~~~~ai~~A~~na~~n~i~n~~~~~~ 267 (358)
T d1uwva2 192 VNAGVNQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLAT----QAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHE 267 (358)
T ss_dssp SBHHHHHHHHHHHHHHHTCCTTCEEEEESCTTTTTHHHHHT----TSSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEEC
T ss_pred cchhhhhHHHHHHHHhhccCCCceEEEecccccccchhccc----cccEEEeccCcHHHHHHHHHhHHhcccccceeeec
Confidence 34344444455555544433457999999999999999884 4569999999999999999876532 22222221
Q ss_pred chhhhHhhhhc---ccCCCcccEEeecccccCCCCHHHHHHHHHHHHhccCCeEEEEcCCCCCchHHHHHHHHHH
Q 015771 88 YNSIQALNKDI---SKSEREHDLVIASYVLGEVPSLQDRITIVRQLWDLTRDVLVLVEPGTPQGSSIISQMRSHI 159 (400)
Q Consensus 88 ~~~~~~l~~~l---~~~~~~~DLVias~~L~eL~~~~~r~~~i~~Lw~~~gG~LVlVE~Gtp~Gf~~I~~aR~~l 159 (400)
+....+ ......+|+||+-=-=.-+ .+.+..|.+..-..+|-|-- .|. .-|||.-
T Consensus 268 -----~~~~~~~~~~~~~~~~d~vilDPPR~G~------~~~~~~l~~~~~~~ivYVSC-np~-----TlaRDl~ 325 (358)
T d1uwva2 268 -----NLEEDVTKQPWAKNGFDKVLLDPARAGA------AGVMQQIIKLEPIRIVYVSC-NPA-----TLARDSE 325 (358)
T ss_dssp -----CTTSCCSSSGGGTTCCSEEEECCCTTCC------HHHHHHHHHHCCSEEEEEES-CHH-----HHHHHHH
T ss_pred -----chhhhhhhhhhhhccCceEEeCCCCccH------HHHHHHHHHcCCCEEEEEeC-CHH-----HHHHHHH
Confidence 111111 1234568988764322222 23566666643356776643 232 2467763
|
| >d2ifta1 c.66.1.46 (A:11-193) Putative methylase HI0767 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methylase HI0767 species: Haemophilus influenzae [TaxId: 727]
Probab=97.03 E-value=0.0017 Score=55.53 Aligned_cols=113 Identities=18% Similarity=0.191 Sum_probs=66.5
Q ss_pred HHHHHHHHCCCCCCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCCC--Cc-eeechhhhHh
Q 015771 18 VTESFARRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDL--PL-IHSYNSIQAL 94 (400)
Q Consensus 18 vL~el~~rlp~~~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~~--~~-~~~~~~~~~l 94 (400)
+|+-|...+. ..+|||+-||+|+..+.+.. .....++.||.|...++..++.++..... .. +........+
T Consensus 34 lFn~l~~~~~---~~~vLDlFaGsG~~glEalS---RGA~~v~fVE~~~~a~~~ik~Ni~~l~~~~~~~~~~~~d~~~~l 107 (183)
T d2ifta1 34 LFNWLMPYIH---QSECLDGFAGSGSLGFEALS---RQAKKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFL 107 (183)
T ss_dssp HHHHHHHHHT---TCEEEETTCTTCHHHHHHHH---TTCSEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHT
T ss_pred HHHHhhhhcc---cceEeecccCccceeeeeee---ecceeeEEeecccchhhhHhhHHhhhcccccccccccccccccc
Confidence 4455554433 37999999999999887663 34679999999999999998887654321 11 1111101111
Q ss_pred hhhcccCCCcccEEeec--ccccCCCCHHHHHHHHHHHHhc---cCCeEEEEcCC
Q 015771 95 NKDISKSEREHDLVIAS--YVLGEVPSLQDRITIVRQLWDL---TRDVLVLVEPG 144 (400)
Q Consensus 95 ~~~l~~~~~~~DLVias--~~L~eL~~~~~r~~~i~~Lw~~---~gG~LVlVE~G 144 (400)
. ......+||+|++- |... .-..++..+.+. ..+.+|++|..
T Consensus 108 ~--~~~~~~~fDlIFlDPPY~~~------~~~~~l~~l~~~~~L~~~~liiiE~~ 154 (183)
T d2ifta1 108 K--QPQNQPHFDVVFLDPPFHFN------LAEQAISLLCENNWLKPNALIYVETE 154 (183)
T ss_dssp T--SCCSSCCEEEEEECCCSSSC------HHHHHHHHHHHTTCEEEEEEEEEEEE
T ss_pred c--ccccCCcccEEEechhHhhh------hHHHHHHHHHHhCCcCCCcEEEEEec
Confidence 1 11234579999884 4321 122345555442 24567777753
|
| >d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Bacillus subtilis [TaxId: 1423]
Probab=96.96 E-value=0.0016 Score=59.44 Aligned_cols=111 Identities=17% Similarity=0.229 Sum_probs=66.6
Q ss_pred CCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcC---CCCCCceeechhhhHhhhhcccCCCccc
Q 015771 30 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQG---PKDLPLIHSYNSIQALNKDISKSEREHD 106 (400)
Q Consensus 30 ~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~---~~~~~~~~~~~~~~~l~~~l~~~~~~~D 106 (400)
.|++||-+|.|.|..+..+.... ...++++||++++++++|++.+.. .-+-+.+... ..+....+....++||
T Consensus 75 ~p~~vLiiGgG~G~~~~~~l~~~--~~~~i~~VEID~~Vi~~a~~~~~~~~~~~~d~r~~i~--~~D~~~~l~~~~~~yD 150 (274)
T d1iy9a_ 75 NPEHVLVVGGGDGGVIREILKHP--SVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQ--VDDGFMHIAKSENQYD 150 (274)
T ss_dssp SCCEEEEESCTTCHHHHHHTTCT--TCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEE--ESCSHHHHHTCCSCEE
T ss_pred CcceEEecCCCCcHHHHHHHhcC--CcceEEEecCCHHHHHHHHHhChhhcccccCCCeEEE--echHHHHHhhcCCCCC
Confidence 57899999999999987776443 357999999999999999997742 1112222211 1111111222456899
Q ss_pred EEeecccc-----cCCCCHHHHHHHHHHHHhccCCeEEEEcCCCCC
Q 015771 107 LVIASYVL-----GEVPSLQDRITIVRQLWDLTRDVLVLVEPGTPQ 147 (400)
Q Consensus 107 LVias~~L-----~eL~~~~~r~~~i~~Lw~~~gG~LVlVE~Gtp~ 147 (400)
+||+--.- ..|-+ .+-.+.+++.++ ++|++|.= -+.|.
T Consensus 151 vIi~D~~~p~~~~~~L~t-~eFy~~~~~~L~-~~Gv~v~q-~~s~~ 193 (274)
T d1iy9a_ 151 VIMVDSTEPVGPAVNLFT-KGFYAGIAKALK-EDGIFVAQ-TDNPW 193 (274)
T ss_dssp EEEESCSSCCSCCCCCST-THHHHHHHHHEE-EEEEEEEE-CCCTT
T ss_pred EEEEcCCCCCCcchhhcc-HHHHHHHHhhcC-CCceEEEe-cCCcc
Confidence 99864321 11221 123344555553 78988854 34444
|
| >d1ej0a_ c.66.1.2 (A:) RNA methyltransferase FtsJ {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: RNA methyltransferase FtsJ domain: RNA methyltransferase FtsJ species: Escherichia coli [TaxId: 562]
Probab=96.94 E-value=0.0019 Score=55.30 Aligned_cols=47 Identities=15% Similarity=0.131 Sum_probs=35.3
Q ss_pred HHHHHHHCCCCCC-CeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCH
Q 015771 19 TESFARRLPGFSP-AKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQ 66 (400)
Q Consensus 19 L~el~~rlp~~~p-~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~ 66 (400)
|.||-++..-++| .+|||+||+||..+-.+.+..+ ....++++|..+
T Consensus 10 L~EI~~k~~l~k~~~~vlDLg~aPGgw~q~~~~~~~-~~~~v~~vDl~~ 57 (180)
T d1ej0a_ 10 LDEIQQSDKLFKPGMTVVDLGAAPGGWSQYVVTQIG-GKGRIIACDLLP 57 (180)
T ss_dssp HHHHHHHHCCCCTTCEEEEESCTTCHHHHHHHHHHC-TTCEEEEEESSC
T ss_pred HHHHHHHhCccCCCCeEEEEeccCCcceEEEEeecc-ccceEEEeeccc
Confidence 5566666655655 6999999999999887776654 346899999654
|
| >d1jsxa_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glucose-inhibited division protein B (GidB) domain: Glucose-inhibited division protein B (GidB) species: Escherichia coli [TaxId: 562]
Probab=96.91 E-value=0.0011 Score=58.12 Aligned_cols=112 Identities=19% Similarity=0.247 Sum_probs=65.3
Q ss_pred HHHHHHHHHHCCCCCCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCC--CCCceeechhhhH
Q 015771 16 LLVTESFARRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK--DLPLIHSYNSIQA 93 (400)
Q Consensus 16 ~~vL~el~~rlp~~~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~--~~~~~~~~~~~~~ 93 (400)
..+++-+.- ++.+.+.+|||+|+|.|--.+.++-.+|+ .+++.+|.+..=....+......+ |+..++..
T Consensus 52 rHi~DSl~~-~~~~~~~~ilDiGsGaG~PGi~laI~~p~--~~~~Lves~~KK~~FL~~~~~~L~L~nv~v~~~R----- 123 (207)
T d1jsxa_ 52 RHILDSIVV-APYLQGERFIDVGTGPGLPGIPLSIVRPE--AHFTLLDSLGKRVRFLRQVQHELKLENIEPVQSR----- 123 (207)
T ss_dssp HHHHHHHHH-GGGCCSSEEEEETCTTTTTHHHHHHHCTT--SEEEEEESCHHHHHHHHHHHHHTTCSSEEEEECC-----
T ss_pred HHhcchHhh-hhhhcCCceeeeeccCCceeeehhhhccc--ceEEEEecchHHHHHHHHHHHHcCCcceeeeccc-----
Confidence 345554442 23456689999999999655555555663 689999999986666666554432 33222221
Q ss_pred hhhhcccCCCcccEEeecccccCCCCHHHHHHHHHHHHhccCCeEEEEc
Q 015771 94 LNKDISKSEREHDLVIASYVLGEVPSLQDRITIVRQLWDLTRDVLVLVE 142 (400)
Q Consensus 94 l~~~l~~~~~~~DLVias~~L~eL~~~~~r~~~i~~Lw~~~gG~LVlVE 142 (400)
.. .+. ...+||+|++--+ .. ......+...+.+ ++|.+++.-
T Consensus 124 ~E-~~~-~~~~fD~V~sRA~-~~---~~~ll~~~~~~l~-~~g~~~~~K 165 (207)
T d1jsxa_ 124 VE-EFP-SEPPFDGVISRAF-AS---LNDMVSWCHHLPG-EQGRFYALK 165 (207)
T ss_dssp TT-TSC-CCSCEEEEECSCS-SS---HHHHHHHHTTSEE-EEEEEEEEE
T ss_pred hh-hhc-cccccceehhhhh-cC---HHHHHHHHHHhcC-CCcEEEEEC
Confidence 11 111 3457998876443 33 3333444444443 588877663
|
| >d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.85 E-value=0.0014 Score=60.36 Aligned_cols=107 Identities=14% Similarity=0.184 Sum_probs=62.7
Q ss_pred CCCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCC---CCCCceeechhhhHhhhhcccCCCcc
Q 015771 29 FSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGP---KDLPLIHSYNSIQALNKDISKSEREH 105 (400)
Q Consensus 29 ~~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~---~~~~~~~~~~~~~~l~~~l~~~~~~~ 105 (400)
-.|++||-+|.|.|..+..+....+ ..++++||++++++++|++-+... -+-+.++.. ..|....+....++|
T Consensus 77 ~~pk~vLiiGgG~G~~~~~~l~~~~--~~~v~~vEiD~~Vv~~a~~~~~~~~~~~~d~rv~i~--~~Da~~~l~~~~~~y 152 (285)
T d2o07a1 77 PNPRKVLIIGGGDGGVLREVVKHPS--VESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLH--VGDGFEFMKQNQDAF 152 (285)
T ss_dssp SSCCEEEEEECTTSHHHHHHTTCTT--CCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEE--ESCHHHHHHTCSSCE
T ss_pred cCcCeEEEeCCCchHHHHHHHHcCC--cceeeeccCCHHHHHHHHhhchhhccccCCCCceEE--EccHHHHHhcCCCCC
Confidence 3679999999999999887775443 579999999999999999876421 011222211 111111222245689
Q ss_pred cEEeecccccCCCCHH-----HHHHHHHHHHhccCCeEEEE
Q 015771 106 DLVIASYVLGEVPSLQ-----DRITIVRQLWDLTRDVLVLV 141 (400)
Q Consensus 106 DLVias~~L~eL~~~~-----~r~~~i~~Lw~~~gG~LVlV 141 (400)
|+||+--. ....... +-.+.+++.++ ++|++|+=
T Consensus 153 DvIi~D~~-~p~~~~~~L~t~eF~~~~~~~L~-~~Gi~v~q 191 (285)
T d2o07a1 153 DVIITDSS-DPMGPAESLFKESYYQLMKTALK-EDGVLCCQ 191 (285)
T ss_dssp EEEEEECC------------CHHHHHHHHHEE-EEEEEEEE
T ss_pred CEEEEcCC-CCCCcccccccHHHHHHHHHhcC-CCCeEEEe
Confidence 99997532 1111111 11233444442 78988864
|
| >d1qyra_ c.66.1.24 (A:) High level kasugamycin resistance protein KsgA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: High level kasugamycin resistance protein KsgA species: Escherichia coli [TaxId: 562]
Probab=96.72 E-value=0.00065 Score=61.47 Aligned_cols=56 Identities=13% Similarity=0.163 Sum_probs=41.5
Q ss_pred HHHHHHHCCCCCCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcC
Q 015771 19 TESFARRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQG 78 (400)
Q Consensus 19 L~el~~rlp~~~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~ 78 (400)
++.+...+..-....||++|||+|+.+..+++ ...++++||.++.|.+..+.....
T Consensus 10 ~~~Iv~~~~~~~~d~vlEIGpG~G~LT~~Ll~----~~~~v~aiEiD~~l~~~L~~~~~~ 65 (252)
T d1qyra_ 10 IDSIVSAINPQKGQAMVEIGPGLAALTEPVGE----RLDQLTVIELDRDLAARLQTHPFL 65 (252)
T ss_dssp HHHHHHHHCCCTTCCEEEECCTTTTTHHHHHT----TCSCEEEECCCHHHHHHHHTCTTT
T ss_pred HHHHHHhcCCCCCCEEEEECCCchHHHHHHHc----cCCceEEEEeccchhHHHHHHhhh
Confidence 33343333223357899999999999999884 456899999999999988775543
|
| >d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=96.65 E-value=0.0027 Score=58.37 Aligned_cols=108 Identities=17% Similarity=0.181 Sum_probs=64.0
Q ss_pred CCCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCC---CCCceeechhhhHhhhhcc-cCCCc
Q 015771 29 FSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK---DLPLIHSYNSIQALNKDIS-KSERE 104 (400)
Q Consensus 29 ~~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~---~~~~~~~~~~~~~l~~~l~-~~~~~ 104 (400)
-+|++||=+|.|.|..+.++....+ ..++++||+++++++++++-+.... +-+.+... .++....+. ...++
T Consensus 79 ~~pk~VLiiGgG~G~~~r~~l~~~~--~~~i~~VEiD~~Vi~~~~~~f~~~~~~~~~~r~~i~--~~Da~~~l~~~~~~~ 154 (290)
T d1xj5a_ 79 PNPKKVLVIGGGDGGVLREVARHAS--IEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLV--IGDGVAFLKNAAEGS 154 (290)
T ss_dssp SCCCEEEEETCSSSHHHHHHTTCTT--CCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEE--ESCHHHHHHTSCTTC
T ss_pred CCCcceEEecCCchHHHHHHHhccc--ceeeEEecCCHHHHHHHHHhchhhhccccCCCcEEE--EccHHHHHhhccccC
Confidence 3678999999999999988776443 5689999999999999998763210 11222111 111111121 23458
Q ss_pred ccEEeecccc-----cCCCCHHHHHHHHHHHHhccCCeEEEEc
Q 015771 105 HDLVIASYVL-----GEVPSLQDRITIVRQLWDLTRDVLVLVE 142 (400)
Q Consensus 105 ~DLVias~~L-----~eL~~~~~r~~~i~~Lw~~~gG~LVlVE 142 (400)
||+||+--.= ..|-+ .+-.+.+++.++ ++|++|.=-
T Consensus 155 yDvIi~D~~dp~~~~~~L~t-~eF~~~~~~~L~-~~Gi~v~q~ 195 (290)
T d1xj5a_ 155 YDAVIVDSSDPIGPAKELFE-KPFFQSVARALR-PGGVVCTQA 195 (290)
T ss_dssp EEEEEECCCCTTSGGGGGGS-HHHHHHHHHHEE-EEEEEEEEC
T ss_pred ccEEEEcCCCCCCcchhhCC-HHHHHHHHHhcC-CCcEEEEec
Confidence 9999974321 11111 122233444442 789888754
|
| >d1yuba_ c.66.1.24 (A:) rRNA adenine dimethylase {Streptococcus pneumoniae, Ermam [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: rRNA adenine dimethylase species: Streptococcus pneumoniae, Ermam [TaxId: 1313]
Probab=96.63 E-value=5.4e-05 Score=68.59 Aligned_cols=64 Identities=17% Similarity=0.236 Sum_probs=44.7
Q ss_pred HHHHHHHHCCCCCCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCCCCce
Q 015771 18 VTESFARRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLI 85 (400)
Q Consensus 18 vL~el~~rlp~~~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~~~~~ 85 (400)
++..+.+.+..-...+|||+|||+|+.+..+++. ..++++||.++.|.+.++..+....++.++
T Consensus 17 ii~kIv~~~~~~~~d~VLEIGpG~G~LT~~L~~~----~~~v~aIE~D~~l~~~l~~~~~~~~n~~ii 80 (245)
T d1yuba_ 17 VLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKI----SKQVTSIELDSHLFNLSSEKLKLNTRVTLI 80 (245)
T ss_dssp THHHHHHHCCCCSSEEEEECSCCCSSCSHHHHHH----SSEEEESSSSCSSSSSSSCTTTTCSEEEEC
T ss_pred HHHHHHHhcCCCCCCeEEEECCCccHHHHHHHhh----cCceeEeeecccchhhhhhhhhhccchhhh
Confidence 3445555443334468999999999999888764 358999999999987776665543333333
|
| >d1zq9a1 c.66.1.24 (A:36-313) Probable dimethyladenosine transferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: Probable dimethyladenosine transferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.56 E-value=0.0031 Score=57.64 Aligned_cols=58 Identities=24% Similarity=0.236 Sum_probs=44.3
Q ss_pred HHHHHHHHCCCCCCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCC
Q 015771 18 VTESFARRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGP 79 (400)
Q Consensus 18 vL~el~~rlp~~~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~ 79 (400)
+++.+......-....||++|+|+|+.+.++.+. ..++++||.++.+.+..+..+...
T Consensus 9 i~~kIv~~~~~~~~d~VlEIGPG~G~LT~~Ll~~----~~~v~aiE~D~~l~~~L~~~~~~~ 66 (278)
T d1zq9a1 9 IINSIIDKAALRPTDVVLEVGPGTGNMTVKLLEK----AKKVVACELDPRLVAELHKRVQGT 66 (278)
T ss_dssp HHHHHHHHTCCCTTCEEEEECCTTSTTHHHHHHH----SSEEEEEESCHHHHHHHHHHHTTS
T ss_pred HHHHHHHHhCCCCCCEEEEECCCchHHHHHHHhc----CCcEEEEEEccchhHHHHHHHhhh
Confidence 4444544443223468999999999999998864 358999999999999998887653
|
| >d1xdza_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glucose-inhibited division protein B (GidB) domain: Glucose-inhibited division protein B (GidB) species: Bacillus subtilis [TaxId: 1423]
Probab=96.19 E-value=0.0045 Score=55.23 Aligned_cols=117 Identities=15% Similarity=0.225 Sum_probs=68.4
Q ss_pred CCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCC--CCCCceeechhhhHhhhhcccCCCcccEE
Q 015771 31 PAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGP--KDLPLIHSYNSIQALNKDISKSEREHDLV 108 (400)
Q Consensus 31 p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~--~~~~~~~~~~~~~~l~~~l~~~~~~~DLV 108 (400)
..+|+|+|+|.|--.+.++-.+|+ .+++.||.+..=....+...... .++..++.. .+.+... ......||+|
T Consensus 71 ~~~ilDiGSGaGfPGi~laI~~p~--~~v~Lves~~KK~~FL~~v~~~L~L~n~~i~~~R--~E~~~~~-~~~~~~~D~v 145 (239)
T d1xdza_ 71 VNTICDVGAGAGFPSLPIKICFPH--LHVTIVDSLNKRITFLEKLSEALQLENTTFCHDR--AETFGQR-KDVRESYDIV 145 (239)
T ss_dssp CCEEEEECSSSCTTHHHHHHHCTT--CEEEEEESCHHHHHHHHHHHHHHTCSSEEEEESC--HHHHTTC-TTTTTCEEEE
T ss_pred CCeEEeecCCCchHHHHHHHhCCC--ccceeecchHHHHHHHHHHHHHhCCCCcEEEeeh--hhhcccc-ccccccceEE
Confidence 468999999999665555555663 58999999987555544444332 233333321 2222211 1124689999
Q ss_pred eecccccCCCCHHHHHHHHHHHHhccCCeEEEEcCCCCCchHHHHHHHHHH
Q 015771 109 IASYVLGEVPSLQDRITIVRQLWDLTRDVLVLVEPGTPQGSSIISQMRSHI 159 (400)
Q Consensus 109 ias~~L~eL~~~~~r~~~i~~Lw~~~gG~LVlVE~Gtp~Gf~~I~~aR~~l 159 (400)
++-- +.. ......+...+.+ ++|.+++.- |. ..-+-|..++..+
T Consensus 146 ~sRA-va~---l~~ll~~~~~~l~-~~g~~i~~K-G~-~~~~El~~a~~~~ 189 (239)
T d1xdza_ 146 TARA-VAR---LSVLSELCLPLVK-KNGLFVALK-AA-SAEEELNAGKKAI 189 (239)
T ss_dssp EEEC-CSC---HHHHHHHHGGGEE-EEEEEEEEE-CC--CHHHHHHHHHHH
T ss_pred EEhh-hhC---HHHHHHHHhhhcc-cCCEEEEEC-CC-ChHHHHHHHHHHH
Confidence 8864 333 3344555555554 588877764 33 3345566666654
|
| >d1wg8a2 c.66.1.23 (A:5-108,A:207-284) TM0872, methyltransferase domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: MraW-like putative methyltransferases domain: TM0872, methyltransferase domain species: Thermus thermophilus [TaxId: 274]
Probab=95.68 E-value=0.012 Score=50.21 Aligned_cols=117 Identities=12% Similarity=0.070 Sum_probs=67.0
Q ss_pred HHHHHHHCCCCCCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCCCCceeechhhhHhhhhc
Q 015771 19 TESFARRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDI 98 (400)
Q Consensus 19 L~el~~rlp~~~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~~~~~~~~~~~~~l~~~l 98 (400)
|.|+-..+..-....++|..+|.|.-+.++.+. ..+|+++|..+.++..++.+.. .+...++..+ .++...+
T Consensus 7 l~Evl~~l~~~~g~~~vD~T~G~GGhs~~iL~~----~~~viaiD~D~~ai~~a~~~~~--~~~~~~~~~f--~~~~~~l 78 (182)
T d1wg8a2 7 YQEALDLLAVRPGGVYVDATLGGAGHARGILER----GGRVIGLDQDPEAVARAKGLHL--PGLTVVQGNF--RHLKRHL 78 (182)
T ss_dssp HHHHHHHHTCCTTCEEEETTCTTSHHHHHHHHT----TCEEEEEESCHHHHHHHHHTCC--TTEEEEESCG--GGHHHHH
T ss_pred HHHHHHhcCCCCCCEEEEeCCCCcHHHHHHhcc----cCcEEEEhhhhhHHHHHhhccc--cceeEeehHH--HHHHHHH
Confidence 455555543334579999999999888777763 3589999999999999988643 2333333322 1222222
Q ss_pred c-cCCCcccEEeec-----ccccCCCCHH-HHHHHHHHHHh--ccCCeEEEEcC
Q 015771 99 S-KSEREHDLVIAS-----YVLGEVPSLQ-DRITIVRQLWD--LTRDVLVLVEP 143 (400)
Q Consensus 99 ~-~~~~~~DLVias-----~~L~eL~~~~-~r~~~i~~Lw~--~~gG~LVlVE~ 143 (400)
. ...+.+|.|++- +-|......- .....+....+ ++||.++++..
T Consensus 79 ~~~~~~~vdgIl~DLGvSs~qld~~~re~~~~~~~L~~~~~~lk~gg~~~ii~f 132 (182)
T d1wg8a2 79 AALGVERVDGILADLGVSSFHLDDPSDELNALKEFLEQAAEVLAPGGRLVVIAF 132 (182)
T ss_dssp HHTTCSCEEEEEEECSCCHHHHHCGGTHHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred HHcCCCccCEEEEEccCCHHHhhcchHHHHHHHHHHHHHHhhhCCCCeEEEEec
Confidence 1 123567777653 3333221111 11122222222 27899998865
|
| >d2okca1 c.66.1.45 (A:9-433) Type I restriction enzyme StySJI M protein {Bacteroides thetaiotaomicron [TaxId: 818]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: Type I restriction enzyme StySJI M protein species: Bacteroides thetaiotaomicron [TaxId: 818]
Probab=95.30 E-value=0.017 Score=55.51 Aligned_cols=123 Identities=15% Similarity=0.231 Sum_probs=72.8
Q ss_pred CCCeEEEEccchhHHHHHHHHHCCCCC-----------cEEEEEeCCHHHHHHHHHhhc--CCC--CCCceeechhhhHh
Q 015771 30 SPAKVLDFGAGTGSAFWALREVWPRSL-----------EKVNLVEPSQSMQRAGQSLMQ--GPK--DLPLIHSYNSIQAL 94 (400)
Q Consensus 30 ~p~~VLDvG~G~Gt~~~Al~~~~~~~~-----------~~v~~vD~S~~ml~~a~~ll~--~~~--~~~~~~~~~~~~~l 94 (400)
...+|||-.||+|..+.++.+.+.... ..+.++|.++.+..+|+..+- ... ........ .+
T Consensus 162 ~~~~IlDPacGsG~fL~~a~~~~~~~~~~~~~~~~~~~~~l~g~E~~~~~~~la~~n~~l~g~~~~~~~i~~~d----~l 237 (425)
T d2okca1 162 MGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGIGTDRSPIVCED----SL 237 (425)
T ss_dssp TTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTTCCSSCCSEEECC----TT
T ss_pred ccceeeccccccCccHHHHHHHHHhhccchhhhhhhhhhhhhhhhccHHHHHHHHhhhhhcCCccccceeecCc----hh
Confidence 457999999999999988877653211 258999999999998876542 211 11111111 01
Q ss_pred hhhcccCCCcccEEeecccccCCCC--------------HHHHHHHHHHHHhc--cCCeEEEEcCC-C--CCchHHHHHH
Q 015771 95 NKDISKSEREHDLVIASYVLGEVPS--------------LQDRITIVRQLWDL--TRDVLVLVEPG-T--PQGSSIISQM 155 (400)
Q Consensus 95 ~~~l~~~~~~~DLVias~~L~eL~~--------------~~~r~~~i~~Lw~~--~gG~LVlVE~G-t--p~Gf~~I~~a 155 (400)
. .....+||+||+.-=.+.... ...-..++...++. +||.+++|=|. . ..+. -..+
T Consensus 238 ~---~~~~~~fD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G~~~iI~p~~~L~~~~~--~~~i 312 (425)
T d2okca1 238 E---KEPSTLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTGGRAAVVLPDNVLFEAGA--GETI 312 (425)
T ss_dssp T---SCCSSCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEEEEEEEEEEHHHHHCSTH--HHHH
T ss_pred h---hhcccccceEEecCCCCCCccccchhhhhhcccccccHHHHHHHHHHHhcCCCCeEEEEechHHhhhhhh--HHHH
Confidence 1 123468999998643322110 01112355555543 78988888763 2 2222 3467
Q ss_pred HHHHHH
Q 015771 156 RSHILW 161 (400)
Q Consensus 156 R~~lL~ 161 (400)
|++|++
T Consensus 313 R~~Ll~ 318 (425)
T d2okca1 313 RKRLLQ 318 (425)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 999984
|
| >d2bm8a1 c.66.1.50 (A:2-233) Cephalosporin hydroxylase CmcI {Streptomyces clavuligerus [TaxId: 1901]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CmcI-like domain: Cephalosporin hydroxylase CmcI species: Streptomyces clavuligerus [TaxId: 1901]
Probab=94.21 E-value=0.021 Score=50.49 Aligned_cols=48 Identities=15% Similarity=0.179 Sum_probs=31.1
Q ss_pred HHHHHHHHCCCCCCCeEEEEccchhHHHHHHHHHCC--CCCcEEEEEeCCHHH
Q 015771 18 VTESFARRLPGFSPAKVLDFGAGTGSAFWALREVWP--RSLEKVNLVEPSQSM 68 (400)
Q Consensus 18 vL~el~~rlp~~~p~~VLDvG~G~Gt~~~Al~~~~~--~~~~~v~~vD~S~~m 68 (400)
++.+|-.+ .+|.+||++|++.|..+..+++.+. ....+++++|+.+..
T Consensus 71 ~~~eli~~---~KPk~ILEIGv~~GgS~~~~a~~l~~~~~~~kI~giDId~~~ 120 (232)
T d2bm8a1 71 VYHDMLWE---LRPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSR 120 (232)
T ss_dssp HHHHHHHH---HCCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTT
T ss_pred HHHHHHHH---hCCCEEEEECCCCchHHHHHHHHHHhcCCCceEEecCcChhh
Confidence 34444443 3678999999998865544443321 134699999987654
|
| >d2ar0a1 c.66.1.45 (A:6-529) M.EcoKI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: M.EcoKI species: Escherichia coli [TaxId: 562]
Probab=94.15 E-value=0.039 Score=54.36 Aligned_cols=130 Identities=13% Similarity=0.108 Sum_probs=72.1
Q ss_pred CCCCeEEEEccchhHHHHHHHHHCCCCC----------------cEEEEEeCCHHHHHHHHHhhc--CCCCCCceeec-h
Q 015771 29 FSPAKVLDFGAGTGSAFWALREVWPRSL----------------EKVNLVEPSQSMQRAGQSLMQ--GPKDLPLIHSY-N 89 (400)
Q Consensus 29 ~~p~~VLDvG~G~Gt~~~Al~~~~~~~~----------------~~v~~vD~S~~ml~~a~~ll~--~~~~~~~~~~~-~ 89 (400)
....+|+|-.||+|.++.++.+.+.... ..++++|.++.+..+|+..+- ... ....... .
T Consensus 163 ~~~~~i~DPacGsG~fL~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~G~E~~~~~~~la~~nl~l~~~~-~~i~~~~~~ 241 (524)
T d2ar0a1 163 QPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIE-GNLDHGGAI 241 (524)
T ss_dssp CTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHHTTTCC-CBGGGTBSE
T ss_pred ccchhhcchhhhcchhhHHHHHHHHHhcCcccccchhHHHHHHHhhhhhhccCHHHHHHHHHHHHhhccc-ccccccchh
Confidence 3446999999999999988776542211 258999999999998876442 111 1100000 0
Q ss_pred hhh-HhhhhcccCCCcccEEeecccccCCC-----------CHHHHHHHHHHHHhc--cCCeEEEEcCCCC--CchHHHH
Q 015771 90 SIQ-ALNKDISKSEREHDLVIASYVLGEVP-----------SLQDRITIVRQLWDL--TRDVLVLVEPGTP--QGSSIIS 153 (400)
Q Consensus 90 ~~~-~l~~~l~~~~~~~DLVias~~L~eL~-----------~~~~r~~~i~~Lw~~--~gG~LVlVE~Gtp--~Gf~~I~ 153 (400)
... .+... .....+||+|++.-=++.-. ....-..++..+++. +||.+++|=|... .|.. =.
T Consensus 242 ~~~~~l~~d-~~~~~kfD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~gGr~aiIlP~~~Lf~~~~-~~ 319 (524)
T d2ar0a1 242 RLGNTLGSD-GENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHPGGRAAVVVPDNVLFEGGK-GT 319 (524)
T ss_dssp EESCTTSHH-HHTSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHEEEEEEEEEEEEHHHHHCCTH-HH
T ss_pred hhhhhhhhc-ccccccceeEEecCCccccccccchhhhccccccccHHHHHHHHHhccccCcEEEEEehHHhhhhhh-hH
Confidence 000 00000 01345799999864332111 111123455555553 7999998877321 2222 13
Q ss_pred HHHHHHHH
Q 015771 154 QMRSHILW 161 (400)
Q Consensus 154 ~aR~~lL~ 161 (400)
..|+.|+.
T Consensus 320 ~iR~~Ll~ 327 (524)
T d2ar0a1 320 DIRRDLMD 327 (524)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 57999884
|
| >d1i4wa_ c.66.1.24 (A:) Transcription factor sc-mtTFB {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: Transcription factor sc-mtTFB species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.64 E-value=0.049 Score=50.30 Aligned_cols=63 Identities=16% Similarity=0.176 Sum_probs=45.6
Q ss_pred HHHHHHHHH--HHHCCCCCCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcC
Q 015771 14 FTLLVTESF--ARRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQG 78 (400)
Q Consensus 14 ~~~~vL~el--~~rlp~~~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~ 78 (400)
.+..+++.+ ..........+|||+|.|+|+.+.++.+.. ...++++||.++.+.+..+.++.+
T Consensus 25 i~~~Iv~~~~l~~~~~~~~~~~VlEIGPG~G~LT~~Ll~~~--~~~~v~~iE~D~~~~~~L~~~~~~ 89 (322)
T d1i4wa_ 25 VYNKIFDKLDLTKTYKHPEELKVLDLYPGVGIQSAIFYNKY--CPRQYSLLEKRSSLYKFLNAKFEG 89 (322)
T ss_dssp HHHHHHHHHCGGGTCCCTTTCEEEEESCTTCHHHHHHHHHH--CCSEEEEECCCHHHHHHHHHHTTT
T ss_pred HHHHHHHHhcCCccccccCCCeEEEECCCCCHHHHHHHhcC--CCCEEEEEECCHHHHHHHHHhccC
Confidence 344454443 222233456789999999999999988653 235899999999999998888764
|
| >d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=93.57 E-value=0.14 Score=46.24 Aligned_cols=116 Identities=17% Similarity=0.184 Sum_probs=67.7
Q ss_pred CCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCCCCceeechhhhHhhhhcccCCCcccEEe
Q 015771 30 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDISKSEREHDLVI 109 (400)
Q Consensus 30 ~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~~~~~~~~~~~~~l~~~l~~~~~~~DLVi 109 (400)
...+|||+.||||.=+.++++... ...++++|.|..-++..+..++..+....+.... -.... . ......||.|+
T Consensus 102 ~g~~vLD~CAaPGgKt~~la~l~~--~~~i~a~d~~~~R~~~l~~~~~r~g~~~~~~~~~-~~~~~-~-~~~~~~fd~IL 176 (284)
T d1sqga2 102 NGEHILDLCAAPGGKTTHILEVAP--EAQVVAVDIDEQRLSRVYDNLKRLGMKATVKQGD-GRYPS-Q-WCGEQQFDRIL 176 (284)
T ss_dssp TTCEEEEESCTTCHHHHHHHHHCT--TCEEEEEESSTTTHHHHHHHHHHTTCCCEEEECC-TTCTH-H-HHTTCCEEEEE
T ss_pred ccceeEeccCccccchhhhhhhhh--hhhhhhhhcchhhhhhHhhhhhcccccceeeecc-ccccc-h-hcccccccEEE
Confidence 447999999999988777777654 2689999999998888777776653211111100 00000 0 11345799997
Q ss_pred e------cccccCCCCHH-------------HHHHHHHHHHhc--cCCeEEEEcCC-CCCchH
Q 015771 110 A------SYVLGEVPSLQ-------------DRITIVRQLWDL--TRDVLVLVEPG-TPQGSS 150 (400)
Q Consensus 110 a------s~~L~eL~~~~-------------~r~~~i~~Lw~~--~gG~LVlVE~G-tp~Gf~ 150 (400)
+ +-++.--|+.. -..+++++.++. +||+||-.--. +|.-.+
T Consensus 177 ~DaPCSg~G~~rr~p~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lk~gG~lvYsTCS~~~~ENE 239 (284)
T d1sqga2 177 LDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATCSVLPEENS 239 (284)
T ss_dssp EECCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEESCCCGGGTH
T ss_pred EeccccccCccccccchhhccccchhhHHHHHHHHHHHHHHHhcCCCceEEEeeecCchhhCH
Confidence 5 22333222211 012355555543 79999987664 344333
|
| >d1zkda1 c.66.1.52 (A:2-366) Hypothetical protein RPA4359 {Rhodopseudomonas palustris [TaxId: 1076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: RPA4359-like domain: Hypothetical protein RPA4359 species: Rhodopseudomonas palustris [TaxId: 1076]
Probab=93.49 E-value=0.17 Score=47.14 Aligned_cols=56 Identities=18% Similarity=0.269 Sum_probs=40.6
Q ss_pred HHCCCCCCCeEEEEccchhHHHHHHHHHCCC-----CCcEEEEEeCCHHHHHHHHHhhcCC
Q 015771 24 RRLPGFSPAKVLDFGAGTGSAFWALREVWPR-----SLEKVNLVEPSQSMQRAGQSLMQGP 79 (400)
Q Consensus 24 ~rlp~~~p~~VLDvG~G~Gt~~~Al~~~~~~-----~~~~v~~vD~S~~ml~~a~~ll~~~ 79 (400)
..+..-.+.+|+++|+|.|+++.-+...+.. ...+|+.||.|+.+.+.-+..+...
T Consensus 73 ~~~~~~~~~~ivE~GaG~G~La~dil~~l~~~~~~~~~~~~~~vE~s~~L~~~Q~~~l~~~ 133 (365)
T d1zkda1 73 KAADEPQTLRLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEINPVLRQKQQTLLAGI 133 (365)
T ss_dssp HHTTCCSSEEEEEECCTTSHHHHHHHHHHTTSHHHHTTEEEEEECCCHHHHHHHHHHSTTC
T ss_pred HHhCCCccceEEecCCcccHHHHhhhhhhcccccccccceEEEeccchhHHHHHHHHhccc
Confidence 3344434568999999999998766555431 2357999999999988877777643
|
| >d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]
Probab=93.41 E-value=0.24 Score=40.30 Aligned_cols=60 Identities=15% Similarity=-0.008 Sum_probs=40.8
Q ss_pred hHHHHHHHHHHHHHHCCCCCCCeEEEEccch-hHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhc
Q 015771 11 CLLFTLLVTESFARRLPGFSPAKVLDFGAGT-GSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQ 77 (400)
Q Consensus 11 ~Ya~~~~vL~el~~rlp~~~p~~VLDvG~G~-Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~ 77 (400)
.+++.++.+... .--...+||-+|+|+ |..+.+++..++ .+++++|.+++-++.++++-.
T Consensus 11 Pla~a~~a~~~~----~~~~g~~vlV~G~G~vG~~~~~~ak~~G---a~vi~v~~~~~r~~~a~~~ga 71 (170)
T d1e3ja2 11 PLSVGVHACRRA----GVQLGTTVLVIGAGPIGLVSVLAAKAYG---AFVVCTARSPRRLEVAKNCGA 71 (170)
T ss_dssp HHHHHHHHHHHH----TCCTTCEEEEECCSHHHHHHHHHHHHTT---CEEEEEESCHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHh----CCCCCCEEEEEcccccchhhHhhHhhhc---ccccccchHHHHHHHHHHcCC
Confidence 345555555332 112336899999995 455555666664 489999999999999988653
|
| >d2b9ea1 c.66.1.38 (A:133-425) NOL1R {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: NOL1R species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.25 E-value=0.098 Score=47.44 Aligned_cols=49 Identities=14% Similarity=0.118 Sum_probs=40.1
Q ss_pred CCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCC
Q 015771 30 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGP 79 (400)
Q Consensus 30 ~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~ 79 (400)
...+|||+.||||.=+..+++... ....++++|.|+.-++..+..++..
T Consensus 94 ~g~~vLD~cAapGgKt~~la~l~~-~~~~i~a~d~~~~R~~~l~~~l~r~ 142 (293)
T d2b9ea1 94 PGSHVIDACAAPGNKTSHLAALLK-NQGKIFAFDLDAKRLASMATLLARA 142 (293)
T ss_dssp TTCEEEESSCTTCHHHHHHHHHHT-TCSEEEEEESCHHHHHHHHHHHHHT
T ss_pred ccceEEecccchhhHHHHHHHHhc-CCceEeeecCCHHHHHHHHHHHHhc
Confidence 346899999999987777777665 3568999999999888888887765
|
| >d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.25 E-value=0.53 Score=38.25 Aligned_cols=60 Identities=17% Similarity=0.048 Sum_probs=40.3
Q ss_pred HhHHHHHHHHHHHHHHCCCCCCCeEEEEccchh-HHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHh
Q 015771 10 ECLLFTLLVTESFARRLPGFSPAKVLDFGAGTG-SAFWALREVWPRSLEKVNLVEPSQSMQRAGQSL 75 (400)
Q Consensus 10 ~~Ya~~~~vL~el~~rlp~~~p~~VLDvG~G~G-t~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~l 75 (400)
..+++.++.+.... --...+||=+|+|+. ..+..++..++ ..+|+++|.++.-++.|+++
T Consensus 10 epla~a~~a~~~~~----~~~gd~VlI~G~G~iG~~~~~~a~~~G--~~~Vi~~d~~~~rl~~a~~~ 70 (171)
T d1pl8a2 10 EPLSVGIHACRRGG----VTLGHKVLVCGAGPIGMVTLLVAKAMG--AAQVVVTDLSATRLSKAKEI 70 (171)
T ss_dssp HHHHHHHHHHHHHT----CCTTCEEEEECCSHHHHHHHHHHHHTT--CSEEEEEESCHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhC----CCCCCEEEEECCCccHHHHHHHHHHcC--CceEEeccCCHHHHHHHHHh
Confidence 45566555553321 112368999999974 44445555554 35899999999999999886
|
| >d1ixka_ c.66.1.38 (A:) Hypothetical methyltransferase PH1374 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: Hypothetical methyltransferase PH1374 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=90.47 E-value=0.3 Score=44.53 Aligned_cols=76 Identities=14% Similarity=0.089 Sum_probs=49.8
Q ss_pred CCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCCCCceeechhhhHhhhhcccCCCcccEEe
Q 015771 30 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDISKSEREHDLVI 109 (400)
Q Consensus 30 ~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~~~~~~~~~~~~~l~~~l~~~~~~~DLVi 109 (400)
...+|||+.||||.=+..+++... ....++++|.++.-+...+..++..+....+... .+ ...++.....||.|+
T Consensus 116 ~g~~vlD~CAapGgKt~~l~~~~~-~~~~i~a~d~~~~r~~~l~~~~~r~~~~~i~~~~---~d-~~~~~~~~~~fD~IL 190 (313)
T d1ixka_ 116 PGEIVADMAAAPGGKTSYLAQLMR-NDGVIYAFDVDENRLRETRLNLSRLGVLNVILFH---SS-SLHIGELNVEFDKIL 190 (313)
T ss_dssp TTCEEEECCSSCSHHHHHHHHHTT-TCSEEEEECSCHHHHHHHHHHHHHHTCCSEEEES---SC-GGGGGGGCCCEEEEE
T ss_pred ccceeeecccchhhhhHhhhhhcc-cccceeeeccCHHHHHHHHHHHHHHHhhcccccc---cc-ccccccccccccEEE
Confidence 347999999999988777777765 4568999999999888877777654221111110 00 111222356799997
Q ss_pred e
Q 015771 110 A 110 (400)
Q Consensus 110 a 110 (400)
+
T Consensus 191 v 191 (313)
T d1ixka_ 191 L 191 (313)
T ss_dssp E
T ss_pred E
Confidence 6
|
| >d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein TM0436 species: Thermotoga maritima [TaxId: 2336]
Probab=90.36 E-value=0.26 Score=40.77 Aligned_cols=58 Identities=16% Similarity=0.105 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHHHCCCCC-CCeEEEEccch-hHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHh
Q 015771 12 LLFTLLVTESFARRLPGFS-PAKVLDFGAGT-GSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSL 75 (400)
Q Consensus 12 Ya~~~~vL~el~~rlp~~~-p~~VLDvG~G~-Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~l 75 (400)
..+.++.+.++ ...+ ..+||-+|+|+ |..+..++..++ ..+|+++|.+++-++.++++
T Consensus 13 ~~ta~~al~~~----~~~~~G~~VlV~GaG~iG~~~~~~ak~~G--a~~Vi~~~~~~~~~~~a~~l 72 (182)
T d1vj0a2 13 GATAYHAFDEY----PESFAGKTVVIQGAGPLGLFGVVIARSLG--AENVIVIAGSPNRLKLAEEI 72 (182)
T ss_dssp HHHHHHHHHTC----SSCCBTCEEEEECCSHHHHHHHHHHHHTT--BSEEEEEESCHHHHHHHHHT
T ss_pred HHHHHHHHHHH----hCCCCCCEEEEECCCccchhheecccccc--cccccccccccccccccccc
Confidence 34555555433 2233 37999999985 556666676664 35899999999999999876
|
| >d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Formaldehyde dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=88.81 E-value=0.45 Score=40.03 Aligned_cols=43 Identities=19% Similarity=0.074 Sum_probs=33.5
Q ss_pred CCeEEEEccch-hHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHh
Q 015771 31 PAKVLDFGAGT-GSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSL 75 (400)
Q Consensus 31 p~~VLDvG~G~-Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~l 75 (400)
..+||-+|||+ |..+..++...+ ..+|+++|.++.-++.|+++
T Consensus 26 G~tVlV~GaG~vGl~a~~~ak~~g--a~~Vi~~d~~~~rl~~a~~~ 69 (195)
T d1kola2 26 GSTVYVAGAGPVGLAAAASARLLG--AAVVIVGDLNPARLAHAKAQ 69 (195)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTT--CSEEEEEESCHHHHHHHHHT
T ss_pred CCEEEEECcCHHHHHHHHHHHhhc--ccceeeecccchhhHhhhhc
Confidence 37999999997 444455555554 46899999999999999886
|
| >d1m6ex_ c.66.1.35 (X:) Salicylic acid carboxyl methyltransferase (SAMT) {Clarkia breweri [TaxId: 36903]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Salicylic acid carboxyl methyltransferase (SAMT) domain: Salicylic acid carboxyl methyltransferase (SAMT) species: Clarkia breweri [TaxId: 36903]
Probab=86.14 E-value=1.5 Score=40.41 Aligned_cols=84 Identities=12% Similarity=0.077 Sum_probs=43.3
Q ss_pred CCeEEEEccchhHHHH--------HHHHHC------CCCCcEEEEEeC-CHHHHHHHHHhhcCCCCCCceeechhhhHhh
Q 015771 31 PAKVLDFGAGTGSAFW--------ALREVW------PRSLEKVNLVEP-SQSMQRAGQSLMQGPKDLPLIHSYNSIQALN 95 (400)
Q Consensus 31 p~~VLDvG~G~Gt~~~--------Al~~~~------~~~~~~v~~vD~-S~~ml~~a~~ll~~~~~~~~~~~~~~~~~l~ 95 (400)
+.+|.|+||..|..++ ++.+.+ +....+|..-|. +.....+-+.+-......+.+... -+.
T Consensus 52 ~~~IADlGCS~G~Ntl~~v~~iI~~i~~~~~~~~~~~~pe~qvf~nDLP~NDFNtLF~~L~~~~~~~~~~f~~----gvp 127 (359)
T d1m6ex_ 52 RLAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIENDVDGVCFIN----GVP 127 (359)
T ss_dssp EECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTSCSCTTCEEEE----EEE
T ss_pred ceEEEEeCCCCCccHHHHHHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCcchHHHHHHhccccccCCCCeEEE----ecC
Confidence 4689999999996542 233222 112245555563 334444444432211111111000 011
Q ss_pred hhcc---cCCCcccEEeecccccCCC
Q 015771 96 KDIS---KSEREHDLVIASYVLGEVP 118 (400)
Q Consensus 96 ~~l~---~~~~~~DLVias~~L~eL~ 118 (400)
.++. .+.++.+++.++++||+|+
T Consensus 128 GSFY~rLfP~~Slh~~~Ss~alHWLS 153 (359)
T d1m6ex_ 128 GSFYGRLFPRNTLHFIHSSYSLMWLS 153 (359)
T ss_dssp SCSSSCCSCTTCBSCEEEESCTTBCS
T ss_pred CchhhhcCCCCceEEeeehhhhhhhh
Confidence 1111 3567899999999999985
|
| >d2dula1 c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TRM1-like domain: N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=85.56 E-value=0.4 Score=44.82 Aligned_cols=47 Identities=23% Similarity=0.121 Sum_probs=37.9
Q ss_pred CCCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhc
Q 015771 29 FSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQ 77 (400)
Q Consensus 29 ~~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~ 77 (400)
+++.+|||..||+|.-.+..+...+ ..+|+++|.|+..++.+++.++
T Consensus 44 ~~~~~vLD~~sasG~rsiRya~E~~--~~~V~~nDis~~A~~~i~~N~~ 90 (375)
T d2dula1 44 LNPKIVLDALSATGIRGIRFALETP--AEEVWLNDISEDAYELMKRNVM 90 (375)
T ss_dssp HCCSEEEESSCTTSHHHHHHHHHSS--CSEEEEEESCHHHHHHHHHHHH
T ss_pred hCCCEEEEcCCCccHHHHHHHHhCC--CCEEEEecCCHHHHHHHHHHHH
Confidence 4678999999999987775443333 4689999999999999998874
|
| >d1booa_ c.66.1.11 (A:) m.PvuII N4 cytosine-specific DNA methyltransferase {Proteus vulgaris [TaxId: 585]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: m.PvuII N4 cytosine-specific DNA methyltransferase species: Proteus vulgaris [TaxId: 585]
Probab=84.48 E-value=0.49 Score=41.88 Aligned_cols=46 Identities=13% Similarity=-0.012 Sum_probs=39.3
Q ss_pred CCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCC
Q 015771 30 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGP 79 (400)
Q Consensus 30 ~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~ 79 (400)
....|||.=||+||.+.|+.. ...+++++|.|++..++|++.+...
T Consensus 250 ~gdiVlDpF~GSGTT~~AA~~----lgR~~Ig~El~~~y~~~a~~Rl~~~ 295 (320)
T d1booa_ 250 PDDLVVDIFGGSNTTGLVAER----ESRKWISFEMKPEYVAASAFRFLDN 295 (320)
T ss_dssp TTCEEEETTCTTCHHHHHHHH----TTCEEEEEESCHHHHHHHHGGGSCS
T ss_pred CCCEEEecCCCCcHHHHHHHH----cCCcEEEEeCCHHHHHHHHHHHHhc
Confidence 347999999999999998774 3468999999999999999888653
|
| >d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Bacterial secondary alcohol dehydrogenase species: Clostridium beijerinckii [TaxId: 1520]
Probab=82.32 E-value=1.6 Score=35.61 Aligned_cols=60 Identities=15% Similarity=-0.008 Sum_probs=40.7
Q ss_pred HhHHHHHHHHHHHHHHCCCCCCCeEEEEccch-hHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHh
Q 015771 10 ECLLFTLLVTESFARRLPGFSPAKVLDFGAGT-GSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSL 75 (400)
Q Consensus 10 ~~Ya~~~~vL~el~~rlp~~~p~~VLDvG~G~-Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~l 75 (400)
..+++.+..+.. .+ --...+||=+|||+ |..+..++..++ ..+|+++|.+++-++.++++
T Consensus 11 ~~~~ta~~a~~~-a~---~~~g~~VlI~GaG~vGl~~~q~ak~~G--a~~Vi~~d~~~~r~~~a~~l 71 (174)
T d1jqba2 11 DMMTTGFHGAEL-AD---IEMGSSVVVIGIGAVGLMGIAGAKLRG--AGRIIGVGSRPICVEAAKFY 71 (174)
T ss_dssp THHHHHHHHHHH-TT---CCTTCCEEEECCSHHHHHHHHHHHTTT--CSCEEEECCCHHHHHHHHHH
T ss_pred hHHHHHHHHHHH-hC---CCCCCEEEEEcCCcchhhhhhhhhccc--ccccccccchhhhHHHHHhh
Confidence 445555555422 11 11236899899996 666666776654 35799999999999998875
|
| >d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: Methyltransferase mboII species: Moraxella bovis [TaxId: 476]
Probab=81.93 E-value=0.78 Score=39.19 Aligned_cols=44 Identities=11% Similarity=0.070 Sum_probs=38.0
Q ss_pred CCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhc
Q 015771 30 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQ 77 (400)
Q Consensus 30 ~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~ 77 (400)
....|||.=||+||.+.|+.. ...+++++|.+++-.++|+++++
T Consensus 212 ~gd~VlDpF~GSGTT~~aa~~----~~R~~ig~El~~~y~~~a~~Rl~ 255 (256)
T d1g60a_ 212 PNDLVLDCFMGSGTTAIVAKK----LGRNFIGCDMNAEYVNQANFVLN 255 (256)
T ss_dssp TTCEEEESSCTTCHHHHHHHH----TTCEEEEEESCHHHHHHHHHHHH
T ss_pred CCCEEEECCCCchHHHHHHHH----cCCeEEEEeCCHHHHHHHHHHHc
Confidence 457999999999999988774 34689999999999999998774
|
| >d2p41a1 c.66.1.25 (A:8-264) An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 {Dengue virus 2 [TaxId: 11060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap methylase domain: An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 species: Dengue virus 2 [TaxId: 11060]
Probab=81.13 E-value=0.72 Score=40.59 Aligned_cols=43 Identities=23% Similarity=0.324 Sum_probs=29.6
Q ss_pred HHHHHHHCCCCCC-CeEEEEccchhHHHHHHHHHCCCCCcEEEEEeC
Q 015771 19 TESFARRLPGFSP-AKVLDFGAGTGSAFWALREVWPRSLEKVNLVEP 64 (400)
Q Consensus 19 L~el~~rlp~~~p-~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~ 64 (400)
|.++.++. .++| .+|+|+|||||.-++.++..- ....+.+++.
T Consensus 55 l~~~~~~~-~~~~~~~vvDlG~~pGgws~~~a~~~--~v~~V~g~~i 98 (257)
T d2p41a1 55 LRWFVERN-LVTPEGKVVDLGCGRGGWSYYCGGLK--NVREVKGLTK 98 (257)
T ss_dssp HHHHHHTT-SSCCCEEEEEETCTTSHHHHHHHTST--TEEEEEEECC
T ss_pred HHHHHHhc-CccCCCeEEEecCCCChHHHHHHhhc--CCCceeEEEe
Confidence 55666664 3444 589999999999988877432 2346677765
|