Citrus Sinensis ID: 015791

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400
Protein Sequence
MMLQMHSSSSFSPKYYYPLQHAGCDKTLQLPLTKVHGGLNRSESKNYAIKCTQSDSFYSTNKIKNNENTSSRNCKPFNKYRVAVTLQQQGCASNNEDDINSTSFWDVLLKKLHALYVFTRPFAMIGTIVGITSIAILPLQSFADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADVEIDKVNKPDLPLASGDLSMGTGLAITLTLSLTSLAIALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQFSFFIHFQKYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYGVSVIVGASSSFQLVKLVSIIGHSTLAFLLWLRAQTVDLSNNASTYSFYMFIWKAIVLC
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccEEccccccccccccccccccccccccccccccccccccccccccccccHHHHHccccccccccccccccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHcccccccHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccHHHccccccccccEEEccccccccccccEEEEEcccccEEEEEEEEEEcccccccccccccEEEEEEccccccccccccccccccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHEEEEHcccccHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHEEccccccHHcHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHccccccccHHccccEEEEEccHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHc
Coil and Loop (DISEMBL)
mmlqmhssssfspkyyyplqhagcdktlqlpltkvhgglnrsesknyaikctqsdsfystnkiknnentssrnckpfnkYRVAVTLQQqgcasnneddinstSFWDVLLKKLHALYVftrpfamigTIVGITSIailplqsfadltPKYFMEFLKALLSAVLMNNYVGTVNQVADVeidkvnkpdlplasgdlsmgTGLAITLTLSLTSLAIALSLQSPPLIFGLIVWFLLGtaysvdlpflrwktkpflagmCMVTVFGLVYQFSFFIHFQKyvlgrpvvitRPLIFAAAIISTISAVMSLLkdipdedgdkqfgfqsissklgkenVLRLCVYALFFAYGVSVIVGASSSFQLVKLVSIIGHSTLAFLLWLRAQTVdlsnnastysFYMFIWKAIVLC
Flexible Loop (DISEMBL)
mmlqmhssssfspKYYYPLQHAGCDKTLQLPLTKVHGglnrsesknyaikctqsdsfystnkiknnentssrnckpFNKYRVAVTLQQQGCASNNEDDINSTSFWDVLLKKLHALYVFTRPFAMIGTIVGITSIAILPLQSFADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADVEIDKVNKPDLPLASGDLSMGTGLAITLTLSLTSLAIALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQFSFFIHFQKYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSissklgkenVLRLCVYALFFAYGVSVIVGASSSFQLVKLVSIIGHSTLAFLLWLRAQTVDLSNNASTYSFYMFIWKAIVLC
Low Complexity Region (SEG)
MMLQMHssssfsPKYYYPLQHAGCDKTLQLPLTKVHGGLNRSESKNYAIKCTQSDSFYSTNKIKNNENTSSRNCKPFNKYRVAVTLQQQGCASNNEDDINSTSFWDVLLKKLHALYVFTRPFAMIGTIVGITSIAILPLQSFADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADVEIDKVNKPDLPLASGDLSMGTGlaitltlsltslaialslQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQFSFFIHFQKYVLGRPVVITRPLifaaaiistisaVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYGVSVIVGASSSFQLVKLVSIIGHSTLAFLLWLRAQTVDLSNNASTYSFYMFIWKAIVLC
Disordered region (IsUnstruct)
*************KYYYPLQHAGCDKTLQLPLTKVHGGLN*****NYAIKCT**********************KPFNKYRVAVTLQQQGCASNNEDDINSTSFWDVLLKKLHALYVFTRPFAMIGTIVGITSIAILPLQSFADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADVEIDKVNKPDLPLASGDLSMGTGLAITLTLSLTSLAIALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQFSFFIHFQKYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDE***KQFGFQSISSKLGKENVLRLCVYALFFAYGVSVIVGASSSFQLVKLVSIIGHSTLAFLLWLRAQTVDLSNNASTYSFYMFIWKAIVL*
Disordered Region (DISOPRED)
********************************T***************************************************************************LKKLHALYVFTRPFAMIGTIVGITSIAILPLQSFADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADVEIDKVNKPDLPLASGDLSMGTGLAITLTLSLTSLAIALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQFSFFIHFQKYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYGVSVIVGASSSFQLVKLVSIIGHSTLAFLLWLRAQTVDLSNNASTYSFYMFIWKAIVLC
Disordered Region (DISEMBL)
***********SPKYYYPLQHAGCDKTLQLPLTKVHGGLNRSESKNYAIKCTQSDSFYSTNKIKNNENTSSRNCKPFNKYRVAVTLQQQGCASNNEDDINSTSFWDVLLKKLHALYVFTRPFAMIGTIVGITSIAILPLQSFADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADVEIDKVNKPDLPLASGDLSMGTGLAITLTLSLTSLAIALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQFSFFIHFQKYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYGVSVIVGASSSFQLVKLVSIIGHSTLAFLLWLRAQTVDLSNNASTYSFYMFIWKAIVLC
Disordered Region (DISPRO)
**********FSPKYYYPLQHAGCDKTLQLPLTKVHGGLNRSESKNYAIKCTQSDSFYSTNKIKNNENTSSRNCKPFNKYRVAVTLQQQ**A********STSFWDVLLKKLHALYVFTRPFAMIGTIVGITSIAILPLQSFADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADVEIDKVNKPDLPLASGDLSMGTGLAITLTLSLTSLAIALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQFSFFIHFQKYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYGVSVIVGASSSFQLVKLVSIIGHSTLAFLLWLRAQTVDLSNNASTYSFYMFIWKAIVLC
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MMLQMHSSSSFSPKYYYPLQHAGCDKTLQLPLTKVHGGLNRSESKNYAIKCTQSDSFYSTNKIKNNENTSSRNCKPFNKYRVAVTLQQQGCASNNEDDINSTSFWDVLLKKLHALYVFTRPFAMIGTIVGITSIAILPLQSFADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADVEIDKVNKPDLPLASGDLSMGTGLAITLTLSLTSLAIALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQFSFFIHFQKYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYGVSVIVGASSSFQLVKLVSIIGHSTLAFLLWLRAQTVDLSNNASTYSFYMFIWKAIVLC
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	400	2.2.26 [Sep-21-2011]
Q8VWJ1	393	Homogentisate phytyltrans	yes	no	0.87	0.885	0.421	1e-74
B7FA90	404	Probable homogentisate ph	no	no	0.9	0.891	0.389	4e-73
B1B3P3	410	Naringenin 8-dimethylally	N/A	no	0.832	0.812	0.375	8e-64
B9A1Q4	409	Glycinol 4-dimethylallylt	no	no	0.725	0.709	0.4	2e-56
Q1ACB3	386	Homogentisate phytyltrans	no	no	0.767	0.795	0.288	3e-24
Q0D576	379	Probable homogentisate ph	no	no	0.685	0.722	0.274	8e-21
A3CW74	279	Digeranylgeranylglyceryl	yes	no	0.395	0.566	0.298	2e-06
B1L6Z7	281	Digeranylgeranylglyceryl	yes	no	0.485	0.690	0.266	2e-06
Q9Z5D6	302	Bacteriochlorophyll synth	yes	no	0.465	0.615	0.269	3e-06
Q9UWY6	282	Digeranylgeranylglyceryl	yes	no	0.435	0.617	0.252	4e-06

>sp|Q8VWJ1|HPT1_ARATH Homogentisate phytyltransferase 1, chloroplastic OS=Arabidopsis thaliana GN=VTE2-1 PE=2 SV=1

 Score =  280 bits (717), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 152/361 (42%), Positives = 223/361 (61%), Gaps = 13/361 (3%)

Query: 41  RSESKNYAIKCTQSDSF----YSTNKIKNNENTSSRNCKPFNK--YRVAVTLQQQGCASN 94
            S S+   ++C  S       +  N ++ +   SS    P +K  +RV  T  Q     +
Sbjct: 27  HSLSEIRVLRCDSSKVVAKPKFRNNLVRPDGQGSSLLLYPKHKSRFRVNATAGQPEAFDS 86

Query: 95  NEDDINSTSFWDVLLKKLHALYVFTRPFAMIGTIVGITSIAILPLQSFADLTPKYFMEFL 154
           N       SF D     L A Y F+RP  +IGT++ I S++ L ++  +D++P  F   L
Sbjct: 87  NSKQ---KSFRD----SLDAFYRFSRPHTVIGTVLSILSVSFLAVEKVSDISPLLFTGIL 139

Query: 155 KALLSAVLMNNYVGTVNQVADVEIDKVNKPDLPLASGDLSMGTGLAITLTLSLTSLAIAL 214
           +A+++A++MN Y+  +NQ++DVEIDKVNKP LPLASG+ S+ TG+AI  + S+ S  +  
Sbjct: 140 EAVVAALMMNIYIVGLNQLSDVEIDKVNKPYLPLASGEYSVNTGIAIVASFSIMSFWLGW 199

Query: 215 SLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQFSFFIHFQKY 274
            + S PL + L V F+LGTAYS++LP LRWK    +A MC++ V  ++ Q +F++H Q +
Sbjct: 200 IVGSWPLFWALFVSFMLGTAYSINLPLLRWKRFALVAAMCILAVRAIIVQIAFYLHIQTH 259

Query: 275 VLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCV 334
           V GRP++ TRPLIFA A +S  S V++L KDIPD +GDK FG +S S  LG++ V   CV
Sbjct: 260 VFGRPILFTRPLIFATAFMSFFSVVIALFKDIPDIEGDKIFGIRSFSVTLGQKRVFWTCV 319

Query: 335 YALFFAYGVSVIVGASSSFQLVKLVSIIGHSTLAFLLWLRAQTVDLSNNASTYSFYMFIW 394
             L  AY V+++VGA+S F   K++S++GH  LA  LW RA++VDLS+     S YMFIW
Sbjct: 320 TLLQMAYAVAILVGATSPFIWSKVISVVGHVILATTLWARAKSVDLSSKTEITSCYMFIW 379

Query: 395 K 395
           K
Sbjct: 380 K 380

Involved in the synthesis of tocopherol (vitamin E). Catalyzes the condensation of homogentisate and phytyl diphosphate to form dimethylphytylhydrquinone. Tocopherol functions to limit lipid oxidation during seed desiccation, quiescence and germination and early seedling development. Protects thylakoid membrane lipids from photooxidation and is required for low-temperature adaptation.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 5EC: .EC: 1EC: .EC: nEC: 8

>sp|B7FA90|HPT1_ORYSJ Probable homogentisate phytyltransferase 1, chloroplastic OS=Oryza sativa subsp. japonica GN=HPT1 PE=2 SV=1

 Score =  275 bits (704), Expect = 4e-73,   Method: Compositional matrix adjust.
 Identities = 142/365 (38%), Positives = 224/365 (61%), Gaps = 5/365 (1%)

Query: 31  PLTKVHGGLNRSESKNYAIKCTQSDSFYSTNKIKNNENTSSRNCKPFNKYRVAVTLQQQG 90
           PL  +H    R  S +   + TQ  SF    K    +++  R   P      +     Q 
Sbjct: 32  PLCSIHRNGKRPVSLSS--QRTQGPSFDQCQKFFGWKSSHHR--IPHRPTSSSADASGQP 87

Query: 91  CASNNEDDINSTSFWDVLLKKLHALYVFTRPFAMIGTIVGITSIAILPLQSFADLTPKYF 150
             S+ E   +S+S W  +   L A Y F+RP  +IGT + I S+++L +++ +D++P + 
Sbjct: 88  LQSSAEAH-DSSSIWKPISSSLDAFYRFSRPHTVIGTALSIVSVSLLAVENLSDVSPLFL 146

Query: 151 MEFLKALLSAVLMNNYVGTVNQVADVEIDKVNKPDLPLASGDLSMGTGLAITLTLSLTSL 210
              L+A+++A+ MN Y+  +NQ+ D+EIDKVNKP LPLASG+ S  TG+A+    +  S 
Sbjct: 147 TGLLEAVVAALFMNIYIVGLNQLFDIEIDKVNKPTLPLASGEYSPATGVALVSAFAAMSF 206

Query: 211 AIALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQFSFFIH 270
            +  ++ S PL   L + F+LGTAYS++LPFLRWK    +A +C++ V  ++ Q +FF+H
Sbjct: 207 GLGWAVGSQPLFLALFISFILGTAYSINLPFLRWKRSAVVAALCILAVRAVIVQLAFFLH 266

Query: 271 FQKYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVL 330
            Q +V  RP V TRPLIFA A ++  S V++L KDIPD +GD+ FG +S S +LG++ V 
Sbjct: 267 IQTFVFRRPAVFTRPLIFATAFMTFFSVVIALFKDIPDIEGDRIFGIKSFSVRLGQKKVF 326

Query: 331 RLCVYALFFAYGVSVIVGASSSFQLVKLVSIIGHSTLAFLLWLRAQTVDLSNNASTYSFY 390
            +CV  L  AY V++++GA+S+    K  +++GH+ LA +LW R++++DL++  +  SFY
Sbjct: 327 WICVGLLEMAYCVAILMGATSACLWSKYATVVGHAILAAILWNRSRSIDLTSKTAITSFY 386

Query: 391 MFIWK 395
           MFIWK
Sbjct: 387 MFIWK 391

Involved in the synthesis of tocopherol (vitamin E). Catalyzes the condensation of homogentisate and phytyl diphosphate to form dimethylphytylhydroquinone.

Oryza sativa subsp. japonica (taxid: 39947)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: n

EC: 8

>sp|B1B3P3|N8DT1_SOPFL Naringenin 8-dimethylallyltransferase 1, chloroplastic OS=Sophora flavescens GN=N8DT-1 PE=1 SV=1

 Score =  244 bits (623), Expect = 8e-64,   Method: Compositional matrix adjust.
 Identities = 127/338 (37%), Positives = 200/338 (59%), Gaps = 5/338 (1%)

Query: 58  YSTNKIKNNENTSSRNCKPFNKYRVAVTLQQQGCASNNEDDINSTSFWDVLLKKLHALYV 117
           Y  N+  +  NTS + C+   KY V    +Q         D    S WD +   L   Y 
Sbjct: 65  YKVNEGGSTSNTS-KECE--KKYVVNAISEQSFEYEPQTRD--PESIWDSVNDALDIFYK 119

Query: 118 FTRPFAMIGTIVGITSIAILPLQSFADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADVE 177
           F RP+AM   ++G T  +++ ++  +DL+  +F+ +L+ +++ + ++ +   +NQ+ D+E
Sbjct: 120 FCRPYAMFTIVLGATFKSLVAVEKLSDLSLAFFIGWLQVVVAVICIHIFGVGLNQLCDIE 179

Query: 178 IDKVNKPDLPLASGDLSMGTGLAITLTLSLTSLAIALSLQSPPLIFGLIVWFLLGTAYSV 237
           IDK+NKPDLPLASG LS    + IT +  +  L  A  + S PL + + +  ++ +AY+V
Sbjct: 180 IDKINKPDLPLASGKLSFRNVVIITASSLILGLGFAWIVDSWPLFWTVFISCMVASAYNV 239

Query: 238 DLPFLRWKTKPFLAGMCMVTVFGLVYQFSFFIHFQKYVLGRPVVITRPLIFAAAIISTIS 297
           DLP LRWK  P L  +  +    +     FF+H Q  V  RP    RPLIF  AI+S  +
Sbjct: 240 DLPLLRWKKYPVLTAINFIADVAVTRSLGFFLHMQTCVFKRPTTFPRPLIFCTAIVSIYA 299

Query: 298 AVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYGVSVIVGASSSFQLVK 357
            V++L KDIPD +GD++FG QS+S +LG + V  +CV  L   YGV+++VGA+S     K
Sbjct: 300 IVIALFKDIPDMEGDEKFGIQSLSLRLGPKRVFWICVSLLEMTYGVTILVGATSPILWSK 359

Query: 358 LVSIIGHSTLAFLLWLRAQTVDLSNNASTYSFYMFIWK 395
           +++++GH+ LA +LW  A++VDL++N   +SFYMFIWK
Sbjct: 360 IITVLGHAVLASVLWYHAKSVDLTSNVVLHSFYMFIWK 397

Involved in the biosynthesis of sophoraflavanone G (SFG). Can use flavanones (naringenin, liquiritigenin and hesperetin) as substrates, but not flavonols or isoflavones. Shows a strict specificity for dimethylallyl diphosphate.

Sophora flavescens (taxid: 49840)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 7

EC: 0

>sp|B9A1Q4|G4DT_SOYBN Glycinol 4-dimethylallyltransferase OS=Glycine max GN=G4DT PE=1 SV=1

 Score =  219 bits (559), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 116/290 (40%), Positives = 173/290 (59%)

Query: 106 DVLLKKLHALYVFTRPFAMIGTIVGITSIAILPLQSFADLTPKYFMEFLKALLSAVLMNN 165
           D +   L A Y F+ P+ MIG  +   S ++L ++  +D++  + +  L+ +L  + +  
Sbjct: 107 DSVKNVLSAFYWFSYPYTMIGITLCAFSSSLLAVEKLSDISLSFLIGVLQGVLPQLFIEI 166

Query: 166 YVGTVNQVADVEIDKVNKPDLPLASGDLSMGTGLAITLTLSLTSLAIALSLQSPPLIFGL 225
           Y+  VNQ+ D+EIDK+NKP LP+ASG  S  TG+ I+      S        S PLI  L
Sbjct: 167 YLCGVNQLYDLEIDKINKPHLPMASGQFSFKTGVIISAAFLALSFGFTWITGSWPLICNL 226

Query: 226 IVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQFSFFIHFQKYVLGRPVVITRP 285
           +V     TAYS+D+P LRWK  PF+A MCM++ + L    S+F H Q  VL RP+   R 
Sbjct: 227 VVIASSWTAYSIDVPLLRWKRYPFVAAMCMISTWALALPISYFHHMQTVVLKRPIGFPRS 286

Query: 286 LIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYGVSV 345
           L F  A ++  S  ++L KDIPD +GDK+ G  S + +LG++    +CV     A+GV +
Sbjct: 287 LGFLVAFMTFYSLGLALSKDIPDVEGDKEHGIDSFAVRLGQKRAFWICVSFFEMAFGVGI 346

Query: 346 IVGASSSFQLVKLVSIIGHSTLAFLLWLRAQTVDLSNNASTYSFYMFIWK 395
           + GAS S    K+ + +G++ LA +LW +A++VDLS+ AST SFYMFIWK
Sbjct: 347 LAGASCSHFWTKIFTGMGNAVLASILWYQAKSVDLSDKASTGSFYMFIWK 396

Proposed to be involved in the biosynthesis of pterocarpan phytoalexins, specifically glyceollins. Can act as a prenyltransferase towards glycinol which is the direct precursor of glyceollins. Seems to be specific for prenylation at C-4 thus producing glyceollin I.

Glycine max (taxid: 3847)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 3

EC: 6

>sp|Q1ACB3|HPT2_ARATH Homogentisate phytyltransferase 2, chloroplastic OS=Arabidopsis thaliana GN=HPT2 PE=2 SV=1

 Score =  112 bits (281), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 93/322 (28%), Positives = 160/322 (49%), Gaps = 15/322 (4%)

Query: 78  NKYRVAVTLQQQGCASNNEDDINSTSFWDVLLKKLHALYVFTRPFAMIGTIVGITSIAIL 137
           N  ++++    Q  A+ ++D +      D + +  +A + F RP  + GT +G T++   
Sbjct: 62  NYRKISIRACSQVGAAESDDPV-----LDRIARFQNACWRFLRPHTIRGTALGSTALVTR 116

Query: 138 PLQSFADLTP-KYFMEFLKALLSAVLMNNYVGTVNQVADVEIDKVNKPDLPLASGDLSMG 196
            L     L      ++ L  LL+ +  N Y+  +NQ+ D+ IDKVNKP LP+A+GDLS+ 
Sbjct: 117 ALIENTHLIKWSLVLKALSGLLALICGNGYIVGINQIYDIGIDKVNKPYLPIAAGDLSVQ 176

Query: 197 TGLAITLTLSLTSLAIALSLQSPPLIFGLI-VWFLLGTAYSVDLPFLRWKTKPFLAGMCM 255
           +   + +  ++  L + +     P I  L  +   LGT YSV  P LR K  P  A + +
Sbjct: 177 SAWLLVIFFAIAGL-LVVGFNFGPFITSLYSLGLFLGTIYSV--PPLRMKRFPVAAFLII 233

Query: 256 VTVFGLVYQFSFFIHFQKYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQF 315
            TV G +  F  + H  +  LG P   + P+ F  + ++  + V+++ KD+PD +GD++F
Sbjct: 234 ATVRGFLLNFGVY-HATRAALGLPFQWSAPVAFITSFVTLFALVIAITKDLPDVEGDRKF 292

Query: 316 GFQSISSKLGKENVLRLCVYALFFAYGVSVIVGASSSFQLVK-LVSIIGHSTLAFLLWLR 374
              ++++KLG  N+  L    L   Y VS I  A    Q+ +  + I  H  LA  L  +
Sbjct: 293 QISTLATKLGVRNIAFLGSGLLLVNY-VSAISLAFYMPQVFRGSLMIPAHVILASGLIFQ 351

Query: 375 AQTVDLSN--NASTYSFYMFIW 394
              ++ +N    +   +Y FIW
Sbjct: 352 TWVLEKANYTKEAISGYYRFIW 373

Involved in the synthesis of tocopherol (vitamin E). Catalyzes the condensation of homogentisate and phytyl diphosphate to form dimethylphytylhydrquinone.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: n

EC: 8

>sp|Q0D576|HPT2_ORYSJ Probable homogentisate phytyltransferase 2, chloroplastic OS=Oryza sativa subsp. japonica GN=HPT2 PE=3 SV=2

 Score =  101 bits (252), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 78/284 (27%), Positives = 135/284 (47%), Gaps = 10/284 (3%)

Query: 116 YVFTRPFAMIGTIVGITSIAILPLQSFADLTPKYFM-EFLKALLSAVLMNNYVGTVNQVA 174
           + F RP  + GT +G  ++    L     L   + + +    L++ +  N Y+  +NQ+ 
Sbjct: 88  WRFLRPHTIRGTALGSIALVARALIENPQLINWWLVFKAFYGLVALICGNGYIVGINQIY 147

Query: 175 DVEIDKVNKPDLPLASGDLSMGTGLAITLTLSLTSLAIALSLQSPPLIFGLIVWFLLGTA 234
           D+ IDKVNKP LP+A+GDLS+ T   + +  +    +I ++   P +     +   LGT 
Sbjct: 148 DIRIDKVNKPYLPIAAGDLSVQTAWLLVVLFAAAGFSIVVTNFGPFITSLYCLGLFLGTI 207

Query: 235 YSVDLPFLRWKTKPFLAGMCMVTVFGLVYQFSFFIHFQKYVLGRPVVITRPLIFAAAIIS 294
           YSV  P  R K  P  A + + TV G +  F  + +  +  LG     + P+ F    ++
Sbjct: 208 YSV--PPFRLKRYPVAAFLIIATVRGFLLNFGVY-YATRAALGLTFQWSSPVAFITCFVT 264

Query: 295 TISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYGVSVIVGASSSFQ 354
             + V+++ KD+PD +GD+++   ++++KLG  N+  L    L   Y  ++ V       
Sbjct: 265 LFALVIAITKDLPDVEGDRKYQISTLATKLGVRNIAFLGSGLLIANYVAAIAVAFLMPQA 324

Query: 355 LVKLVSIIGHSTLA----FLLWLRAQTVDLSNNASTYSFYMFIW 394
             + V +  H+ LA    F  W+  Q     +  S Y  Y FIW
Sbjct: 325 FRRTVMVPVHAALAVGIIFQTWVLEQAKYTKDAISQY--YRFIW 366

Involved in the synthesis of tocopherol (vitamin E). Catalyzes the condensation of homogentisate and phytyl diphosphate to form dimethylphytylhydrquinone.

Oryza sativa subsp. japonica (taxid: 39947)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: n

EC: 8

>sp|A3CW74|DGGGP_METMJ Digeranylgeranylglyceryl phosphate synthase OS=Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1) GN=Memar_1697 PE=3 SV=1

 Score = 54.3 bits (129), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 54/181 (29%), Positives = 84/181 (46%), Gaps = 23/181 (12%)

Query: 147 PKYFMEFLKALLSAVLMNNYVGTVNQVADVEIDKVNKPDLPLASGDLSMGTGLAITLTLS 206
           P   +  + AL++A    N    +N V DVEID++N+PD P+ +GD+S+    A    L 
Sbjct: 36  PSLLLAVIVALITA--GGN---VINDVRDVEIDRINRPDRPIPAGDISLAGARAYAAALF 90

Query: 207 LTSLAIALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQF- 265
           +  +AIA    +  L   +I   +L   Y+V     R K  P L  + +  + G V+ F 
Sbjct: 91  VGGIAIATLTTTLCLAIAIINSVIL-IVYAV-----RLKRTPVLGNVAVAYLAGSVFLFG 144

Query: 266 SFFIHFQKYVLGRPVVITRPLIFAA-AIISTISAVMSLLKDIPDEDGDKQFGFQSISSKL 324
             F   +  V        R L  AA   ++TI+    LLKD  D DGD   G +++   +
Sbjct: 145 GAFAGIEGLV--------RNLSLAAITFLATIA--RELLKDAEDVDGDAAGGARTLPMIV 194

Query: 325 G 325
           G
Sbjct: 195 G 195

Prenyltransferase that catalyzes the transfer of the geranylgeranyl moiety of geranylgeranyl diphosphate (GGPP) to the C2 hydroxyl of (S)-3-O-geranylgeranylglyceryl phosphate (GGGP). This reaction is the second ether-bond-formation step in the biosynthesis of archaeal membrane lipids.

Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1) (taxid: 368407)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 4

EC: 2

>sp|B1L6Z7|DGGGP_KORCO Digeranylgeranylglyceryl phosphate synthase OS=Korarchaeum cryptofilum (strain OPF8) GN=Kcr_1480 PE=3 SV=1

 Score = 54.3 bits (129), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 58/218 (26%), Positives = 99/218 (45%), Gaps = 24/218 (11%)

Query: 109 LKKLHALYVFTRPFAMIGTIVGITSIAILPLQSFADLTPKYFMEFLKALLSAVLMNNYVG 168
           + KL A    +RP   + +I+G        L  + + T  Y    + A L   L+     
Sbjct: 1   MGKLGAYVEISRPKNALMSILG-------TLTGWVNSTSVYDGRLILACLIPPLVLMAGN 53

Query: 169 TVNQVADVEIDKVNKPDLPLASGDLSMGTGLAITLTLSLTSLAIALSLQSPPLIFGLIVW 228
            +N   D EID +NKP  P+ SG +S    L I + LSL    IALS      IF   + 
Sbjct: 54  AINDYYDAEIDAINKPYRPIPSGRISKREALNIYIALSL--FGIALS------IFLGFIE 105

Query: 229 FLLGTAYSVD-LPFLRWKTKPFLAGMCMVTVFGLVYQFSFFIHFQKYVLGRPVVITRPLI 287
           FL+ TA+S+    + RW  +  + G  +V++       +F + F     G    +T  +I
Sbjct: 106 FLIVTAFSLSWYAYARWLKRTGVPGNALVSL-----GVAFTLIFGSLAAGN---LTNKVI 157

Query: 288 FAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLG 325
             +++  T + +   +K + D  GD+  G ++I+ ++G
Sbjct: 158 IFSSVAFTSNLIREFVKAVEDLPGDRAHGVRTIAVRIG 195

Prenyltransferase that catalyzes the transfer of the geranylgeranyl moiety of geranylgeranyl diphosphate (GGPP) to the C2 hydroxyl of (S)-3-O-geranylgeranylglyceryl phosphate (GGGP). This reaction is the second ether-bond-formation step in the biosynthesis of archaeal membrane lipids.

Korarchaeum cryptofilum (strain OPF8) (taxid: 374847)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 4

EC: 2

>sp|Q9Z5D6|BCHG_RHOS4 Bacteriochlorophyll synthase 33 kDa chain OS=Rhodobacter sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158) GN=bchG PE=4 SV=1

 Score = 53.1 bits (126), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 56/208 (26%), Positives = 93/208 (44%), Gaps = 22/208 (10%)

Query: 128 IVGITSIAILPLQSFADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADVEIDKVNKPDLP 187
           + G  S+ I P +       K+ +  L  +L+  L+       N   D  +D VN+PD P
Sbjct: 35  LCGTVSVGIWPGE-------KWPLVLLGMVLAGPLVCGMSQAANNWCDRHVDAVNEPDRP 87

Query: 188 LASGDLSMGTGLAITLTLSLTSLAIALSLQSPPLIFGLIVWFLLGT-AYSVDLPFLRWKT 246
           + SG +    GL I L +++ SLA+   L   P  FG  V+ +L   AYSV+   L+ ++
Sbjct: 88  IPSGRIPGRWGLYIALLMTVLSLAVGWMLG--PWGFGATVFGVLAAWAYSVEPIRLK-RS 144

Query: 247 KPFLAGMCMVTVFGLVYQFSFFIHFQKYVLGRP--VVITRPLIFAAAIISTISAVMSLLK 304
             +  G+  +   GL     +F        G P   ++T  L++A      ++     L 
Sbjct: 145 GWWGPGLVALCYEGL----PWFTGAAVLSAGAPSFFIVTVALLYAFGAHGIMT-----LN 195

Query: 305 DIPDEDGDKQFGFQSISSKLGKENVLRL 332
           D    +GD+Q G +S+   LG E   +L
Sbjct: 196 DFKALEGDRQHGVRSLPVMLGPEVAAKL 223

Catalyzes the esterification of bacteriochlorophyllide a by geranylgeraniol-PPi.

Rhodobacter sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158) (taxid: 272943)

>sp|Q9UWY6|DGGGP_SULSO Digeranylgeranylglyceryl phosphate synthase OS=Sulfolobus solfataricus (strain ATCC 35092 / DSM 1617 / JCM 11322 / P2) GN=ubiA-2 PE=1 SV=1

 Score = 53.1 bits (126), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 49/194 (25%), Positives = 91/194 (46%), Gaps = 20/194 (10%)

Query: 145 LTPKYFMEFLKALLSAVLMN-----NYVGTVNQVADVEIDKVNKPDLPLASGDLSMGTGL 199
           ++ ++++E    LLSA+++       YV  +N V DVEIDK+NKP  P+ SG +S+    
Sbjct: 28  VSSQWYLELKGILLSALVVGLIAAGGYV--INDVYDVEIDKINKPYRPIPSGKISVNKAK 85

Query: 200 AITLTLSLTSLAIALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVF 259
           A+++ L +  +A+++ L    L+  L+    L   Y+ DL     K   F   + + T  
Sbjct: 86  ALSIALFIIGIALSILLNIYALVIALVTAIGL-IYYAKDL-----KKTGFYGNLLVATTT 139

Query: 260 GLVYQFSFFIHFQKYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQS 319
            L   +     F    L R ++ T    F       ++ +  ++K I D +GD     ++
Sbjct: 140 ALSIFYGGLAFFSDNWLLRIIIPTLYAFF-------LTLIREIVKGIEDYNGDSLNNVKT 192

Query: 320 ISSKLGKENVLRLC 333
           +++ LG     R+ 
Sbjct: 193 LATTLGINKSWRIA 206

Prenyltransferase that catalyzes the transfer of the geranylgeranyl moiety of geranylgeranyl diphosphate (GGPP) to the C2 hydroxyl of (S)-3-O-geranylgeranylglyceryl phosphate (GGGP). This reaction is the second ether-bond-formation step in the biosynthesis of archaeal membrane lipids. Can not use other prenyl donors, i.e. farnesyl diphosphate (FPP) and phytyl diphosphate. Moreover, 4-hydroxybenzoate, 1,4-dihydroxy 2-naphthoate, homogentisate, and alpha-glycerophosphate do not function as prenyl acceptor substrates.

Sulfolobus solfataricus (strain ATCC 35092 / DSM 1617 / JCM 11322 / P2) (taxid: 273057)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 4

EC: 2

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	400
359476155	397	PREDICTED: probable homogentisate phytyl	0.902	0.909	0.456	7e-87
296082088	398	unnamed protein product [Vitis vinifera]	0.897	0.902	0.458	1e-86
219842170	411	homogentisate geranylgeranyl transferase	0.98	0.953	0.452	4e-86
224143266	284	predicted protein [Populus trichocarpa]	0.71	1.0	0.545	2e-85
171190284	317	homogentisate geranylgeranyl transferase	0.72	0.908	0.517	2e-78
295656253	401	homogentisate geranylgeranyl transferase	0.97	0.967	0.436	9e-78
374461278	407	aromatic prenyltransferase [Epimedium ac	0.757	0.744	0.458	9e-76
301154093	394	Chlorophyll synthase [Musa balbisiana]	0.732	0.743	0.470	6e-75
301154114	398	Chlorophyll synthase [Musa balbisiana]	0.732	0.736	0.470	6e-75
33391138	408	homogentisic acid geranylgeranyl transfe	0.77	0.754	0.453	8e-75

>gi|359476155|ref|XP_002282953.2| PREDICTED: probable homogentisate phytyltransferase 1, chloroplastic-like [Vitis vinifera]

 Score =  327 bits (838), Expect = 7e-87,   Method: Compositional matrix adjust.
 Identities = 172/377 (45%), Positives = 238/377 (63%), Gaps = 16/377 (4%)

Query: 19  LQHAGCDKTLQLPLTKVHGGLNRSESKNYAIKCTQSDSFYSTNKIKNNENTSSRNCKPFN 78
           LQ  GC +  QL + K H  L      N   KC  S+ F S+  I++    S +     N
Sbjct: 24  LQQQGCVQPPQLSVKKTHNFLKSCYCSN-PFKCC-SEGFSSSVNIQHLTFKSHKR----N 77

Query: 79  KYRVAVTLQQQGCASNNEDDINSTSFWDVLLKKLHALYVFTRPFAMIGTIVGITSIAILP 138
              V+    + G  S  ED  N  S      K+L A Y+F+RP  +IGT++GITS+++LP
Sbjct: 78  PIHVS---SEYGYPSKPEDQ-NHVS------KQLRAFYLFSRPHTIIGTVIGITSVSLLP 127

Query: 139 LQSFADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADVEIDKVNKPDLPLASGDLSMGTG 198
           L++ +DL+P +F+  LKA++ +VLMN YV  +NQ+ DVEIDKVNKP+LPLASGD SM TG
Sbjct: 128 LETISDLSPAFFVGLLKAMVPSVLMNIYVVGLNQIFDVEIDKVNKPELPLASGDFSMETG 187

Query: 199 LAITLTLSLTSLAIALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTV 258
             I     L S+ + +  QSPPL   L++ FLLGTAYS+++P LRWK  P LA  C++ V
Sbjct: 188 SQIVFISLLMSVGMGIMFQSPPLFCALLISFLLGTAYSIEIPLLRWKRYPLLAASCILIV 247

Query: 259 FGLVYQFSFFIHFQKYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQ 318
             +V Q +FF H QK+VLGR +V T+ ++F  A +   S V++L KDIPD DGD++FG Q
Sbjct: 248 RAIVVQLAFFAHIQKHVLGRSIVYTKSVVFGVAFMCFFSTVIALFKDIPDVDGDREFGIQ 307

Query: 319 SISSKLGKENVLRLCVYALFFAYGVSVIVGASSSFQLVKLVSIIGHSTLAFLLWLRAQTV 378
           S + KLG++ V  LCV  L  AYG + ++GASSS   +K  ++  H  LA +LW+RAQ+V
Sbjct: 308 SFTVKLGQKKVFWLCVNMLLMAYGAATVIGASSSSMPIKFATVFCHCALALVLWVRAQSV 367

Query: 379 DLSNNASTYSFYMFIWK 395
           DLS+  +  SFYMFIWK
Sbjct: 368 DLSSKEAVTSFYMFIWK 384

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296082088|emb|CBI21093.3| unnamed protein product [Vitis vinifera]

 Score =  326 bits (836), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 172/375 (45%), Positives = 238/375 (63%), Gaps = 16/375 (4%)

Query: 22  AGCDKTLQLPLTKVHGGLNRSESKNYAIKCTQSDSFYSTNKIKNNENTSSRNCKPFNKYR 81
           AGC +  QL + K H  L      N   KC  S+ F S+  I++    S +     N   
Sbjct: 3   AGCVQPPQLSVKKTHNFLKSCYCSN-PFKCC-SEGFSSSVNIQHLTFKSHKR----NPIH 56

Query: 82  VAVTLQQQGCASNNEDDINSTSFWDVLLKKLHALYVFTRPFAMIGTIVGITSIAILPLQS 141
           V+    + G  S  ED  N  S      K+L A Y+F+RP  +IGT++GITS+++LPL++
Sbjct: 57  VS---SEYGYPSKPEDQ-NHVS------KQLRAFYLFSRPHTIIGTVIGITSVSLLPLET 106

Query: 142 FADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADVEIDKVNKPDLPLASGDLSMGTGLAI 201
            +DL+P +F+  LKA++ +VLMN YV  +NQ+ DVEIDKVNKP+LPLASGD SM TG  I
Sbjct: 107 ISDLSPAFFVGLLKAMVPSVLMNIYVVGLNQIFDVEIDKVNKPELPLASGDFSMETGSQI 166

Query: 202 TLTLSLTSLAIALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGL 261
                L S+ + +  QSPPL   L++ FLLGTAYS+++P LRWK  P LA  C++ V  +
Sbjct: 167 VFISLLMSVGMGIMFQSPPLFCALLISFLLGTAYSIEIPLLRWKRYPLLAASCILIVRAI 226

Query: 262 VYQFSFFIHFQKYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSIS 321
           V Q +FF H QK+VLGR +V T+ ++F  A +   S V++L KDIPD DGD++FG QS +
Sbjct: 227 VVQLAFFAHIQKHVLGRSIVYTKSVVFGVAFMCFFSTVIALFKDIPDVDGDREFGIQSFT 286

Query: 322 SKLGKENVLRLCVYALFFAYGVSVIVGASSSFQLVKLVSIIGHSTLAFLLWLRAQTVDLS 381
            KLG++ V  LCV  L  AYG + ++GASSS   +K  ++  H  LA +LW+RAQ+VDLS
Sbjct: 287 VKLGQKKVFWLCVNMLLMAYGAATVIGASSSSMPIKFATVFCHCALALVLWVRAQSVDLS 346

Query: 382 NNASTYSFYMFIWKA 396
           +  +  SFYMFIWKA
Sbjct: 347 SKEAVTSFYMFIWKA 361

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|219842170|dbj|BAH10642.1| homogentisate geranylgeranyl transferase [Hevea brasiliensis]

 Score =  324 bits (831), Expect = 4e-86,   Method: Compositional matrix adjust.
 Identities = 181/400 (45%), Positives = 254/400 (63%), Gaps = 8/400 (2%)

Query: 2   MLQMHSSSSFSPKYYYPLQHAGCDKTLQLPLTKVHGGLNRSESKNYAIKCTQSDSFYSTN 61
           ML  + S   +    Y +   G   T+ +   +V+  L  S  K   I C+     ++ N
Sbjct: 1   MLHYYPSPCLNTPPKYQVLDPGQVTTVTVLKKQVNHILKESXCKK-PIICSLRSLSWAKN 59

Query: 62  KIKNNENTSSRNCKPFNKYR--VAVTLQQQGCASNNED--DINSTSFWDVLLKKLHALYV 117
             +  E    RN +   +     A+ LQ    A N+ED  DI S+S    +L+ L++LY 
Sbjct: 60  S-RKKELYVLRNLRILTRKNGIPAIFLQNNWLAPNSEDGDDICSSSKRGPILEHLNSLYQ 118

Query: 118 FTRPFAMIGTIVGITSIAILPLQSFADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADVE 177
           F+RP  +IGTI+GITS+++LP+++  DL+P YF+  LKAL+ +VLMN YV  +NQ+ DVE
Sbjct: 119 FSRPHTVIGTIIGITSVSLLPVETIVDLSPTYFIGLLKALVPSVLMNIYVVGLNQLFDVE 178

Query: 178 IDKVNKPDLPLASGDLSMGTGLAITLTLSLTSLAIALSLQSPPLIFGLIVWFLLGTAYSV 237
           IDKVNKP LPLASG  SM TG+ I     L SL + ++ QSPPL+  L++ F LG+ YS+
Sbjct: 179 IDKVNKPYLPLASGKFSMATGILIVSASLLLSLYMGITFQSPPLLAALLISFALGSVYSI 238

Query: 238 DLPFLRWKTKPFLAGMCMVTVFGLVYQFSFFIHFQKYVLGRPVVITRPLIFAAAIISTIS 297
           +LPFLRWK   FLA  C++ V  +V Q +FF+H QK+VLG+ + I R L+FA A +   S
Sbjct: 239 ELPFLRWKKHAFLAASCILIVRAMVVQLAFFVHIQKFVLGKSIFIPRSLMFATAFMCFFS 298

Query: 298 AVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYGVSVIVGASSSFQL-- 355
           A ++L KDIPD +GD+ +G QS S  LG+E VL LCV  L  AYG +V+ GASS   L  
Sbjct: 299 AAIALFKDIPDVEGDRDYGIQSFSVSLGQERVLWLCVNMLLVAYGAAVVHGASSPSSLLP 358

Query: 356 VKLVSIIGHSTLAFLLWLRAQTVDLSNNASTYSFYMFIWK 395
           VKL+++IGHST+A++LW++AQ VDL++  S  SFYMFIWK
Sbjct: 359 VKLITMIGHSTIAWILWMKAQFVDLTSQKSITSFYMFIWK 398

Source: Hevea brasiliensis

Species: Hevea brasiliensis

Genus: Hevea

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224143266|ref|XP_002324898.1| predicted protein [Populus trichocarpa] gi|222866332|gb|EEF03463.1| predicted protein [Populus trichocarpa]

 Score =  322 bits (825), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 155/284 (54%), Positives = 210/284 (73%)

Query: 112 LHALYVFTRPFAMIGTIVGITSIAILPLQSFADLTPKYFMEFLKALLSAVLMNNYVGTVN 171
           LH+ Y F+RP  +IGT++GITS+++LP+++ ++L+P +FM  LKAL+ +VLMN YV  +N
Sbjct: 1   LHSFYQFSRPHTVIGTLIGITSVSLLPVETISELSPTFFMGLLKALVPSVLMNIYVVGLN 60

Query: 172 QVADVEIDKVNKPDLPLASGDLSMGTGLAITLTLSLTSLAIALSLQSPPLIFGLIVWFLL 231
           Q+ DVEIDKVNKP LPLASGD SMGTG+AI     L S A+ +  QSP L   L++  +L
Sbjct: 61  QLFDVEIDKVNKPYLPLASGDFSMGTGVAIVSASLLASFAMGIMFQSPLLFSALLISCVL 120

Query: 232 GTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQFSFFIHFQKYVLGRPVVITRPLIFAAA 291
           G+ YS++LPFLRWK + FLA  C++ V  +V Q +FF+H QK+VLG+  V+TR L+FA A
Sbjct: 121 GSVYSIELPFLRWKKQAFLAATCIMIVRAIVVQLAFFVHMQKFVLGKTTVVTRSLVFATA 180

Query: 292 IISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYGVSVIVGASS 351
            +   SAV++L KDIPD DGD+ +G QS S  LG+E V  LCV  L  AYG +V+VGASS
Sbjct: 181 FMCFFSAVIALFKDIPDVDGDRDYGIQSFSVSLGQERVFWLCVNMLLIAYGAAVVVGASS 240

Query: 352 SFQLVKLVSIIGHSTLAFLLWLRAQTVDLSNNASTYSFYMFIWK 395
           +F   K ++I+GH TLAF+LWLRA++VDL++  S  SFYMFIWK
Sbjct: 241 TFLPSKFITILGHCTLAFILWLRARSVDLTSKDSITSFYMFIWK 284

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|171190284|gb|ACB42448.1| homogentisate geranylgeranyl transferase [Angelica gigas]

 Score =  298 bits (764), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 149/288 (51%), Positives = 200/288 (69%)

Query: 108 LLKKLHALYVFTRPFAMIGTIVGITSIAILPLQSFADLTPKYFMEFLKALLSAVLMNNYV 167
           L +K+ A Y FTRP  +IG+IVGITS+++LPL SF DL+P +F+  LK ++  V +N YV
Sbjct: 17  LWRKVDAFYRFTRPHTIIGSIVGITSVSLLPLVSFEDLSPAFFVGLLKVMIPIVCVNIYV 76

Query: 168 GTVNQVADVEIDKVNKPDLPLASGDLSMGTGLAITLTLSLTSLAIALSLQSPPLIFGLIV 227
             +NQ+ DVEIDKVNKP+LP+ASG+ SM TG AI     L S+ + +  QSPP+++ L+V
Sbjct: 77  VGLNQLYDVEIDKVNKPNLPIASGEYSMETGKAIVSAFGLMSIIMGIMFQSPPVLYCLLV 136

Query: 228 WFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQFSFFIHFQKYVLGRPVVITRPLI 287
            F  GTAYS+D+P  RWK   FLA MC+V V  +  Q + F H Q+YVLGRPV+ +R L 
Sbjct: 137 CFFFGTAYSIDVPLFRWKKNAFLAAMCIVIVRAITVQLTVFYHIQQYVLGRPVLFSRSLA 196

Query: 288 FAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYGVSVIV 347
           FA   ++    V++L KDIPD DGD+ FG Q+I+  LGK+ V  LC+  L  AYG +V++
Sbjct: 197 FAIICMTLFVTVIALFKDIPDVDGDRDFGIQTITVTLGKKRVFWLCITILLIAYGSAVVI 256

Query: 348 GASSSFQLVKLVSIIGHSTLAFLLWLRAQTVDLSNNASTYSFYMFIWK 395
           G+SSS  L KLV++ GH  LA +LW RA +VDL +N S  SFYMFIWK
Sbjct: 257 GSSSSLLLSKLVTVTGHCILASILWSRAISVDLESNKSITSFYMFIWK 304

Source: Angelica gigas

Species: Angelica gigas

Genus: Angelica

Family: Apiaceae

Order: Apiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|295656253|gb|ADG26667.1| homogentisate geranylgeranyl transferase [Coriandrum sativum]

 Score =  296 bits (759), Expect = 9e-78,   Method: Compositional matrix adjust.
 Identities = 172/394 (43%), Positives = 239/394 (60%), Gaps = 6/394 (1%)

Query: 2   MLQMHSSSSFSPKYYYPLQHAGCDKTLQLPLTKVHGGLNRSESKNYAIKCTQSDSFYSTN 61
           M+Q H+    S +   P  + G    LQ P   +      +  K     C   +   +T 
Sbjct: 1   MIQAHNHPFVSCRLQNP-PNQGLITLLQRPQRHLKFSNGNTAKKLSVHSCV--NILAATL 57

Query: 62  KIKNNENTSSRNCKPFNKYRVAVTLQQQGCASNNEDDINSTSFWDVLLKKLHALYVFTRP 121
            I ++ +  +R  K      +  TL+ +    + +D +  T     L +K+ A Y F+RP
Sbjct: 58  SISSSRSKPTRG-KKLPGQTLCGTLEHEFVIESKDDQL--TLLQGDLWRKIDAFYRFSRP 114

Query: 122 FAMIGTIVGITSIAILPLQSFADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADVEIDKV 181
             +IGTI+GITS+++LPL S  DL+P +F+ +LKAL+ ++ MN YV  +NQ+ DVEIDKV
Sbjct: 115 HTIIGTIIGITSVSLLPLTSIGDLSPAFFVGYLKALIPSIFMNIYVVGLNQLFDVEIDKV 174

Query: 182 NKPDLPLASGDLSMGTGLAITLTLSLTSLAIALSLQSPPLIFGLIVWFLLGTAYSVDLPF 241
           NKP+LPLASG+ SMG G AI     L S A+ +  QSPP+ F L++ FL G+AYSV+LP 
Sbjct: 175 NKPNLPLASGEYSMGLGKAIVSAFGLMSFAMGIVFQSPPVFFALLICFLFGSAYSVELPL 234

Query: 242 LRWKTKPFLAGMCMVTVFGLVYQFSFFIHFQKYVLGRPVVITRPLIFAAAIISTISAVMS 301
           LRWK   FLA   ++ V  +    +FF H QKYVLGRP+V  R L FA   IS  + V++
Sbjct: 235 LRWKRNAFLAAFSILMVRAITVNLAFFYHIQKYVLGRPMVFPRSLCFATVCISMFTTVIA 294

Query: 302 LLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYGVSVIVGASSSFQLVKLVSI 361
           L KDIPD DGD+ FG QS S  LG++ V  LC+  L  AY  ++++GASSSF L KLV++
Sbjct: 295 LFKDIPDVDGDRDFGIQSFSVCLGQKRVFWLCIGILLIAYASALVIGASSSFLLSKLVTV 354

Query: 362 IGHSTLAFLLWLRAQTVDLSNNASTYSFYMFIWK 395
           IGH TLA +LW RA +V+L +N+S  SFYM IWK
Sbjct: 355 IGHCTLASILWRRANSVNLEDNSSMTSFYMSIWK 388

Source: Coriandrum sativum

Species: Coriandrum sativum

Genus: Coriandrum

Family: Apiaceae

Order: Apiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|374461278|gb|AEZ53107.1| aromatic prenyltransferase [Epimedium acuminatum]

 Score =  290 bits (742), Expect = 9e-76,   Method: Compositional matrix adjust.
 Identities = 139/303 (45%), Positives = 207/303 (68%)

Query: 93  SNNEDDINSTSFWDVLLKKLHALYVFTRPFAMIGTIVGITSIAILPLQSFADLTPKYFME 152
           ++  +  N  +FW  +     A Y F+RP  +IGT + I S+++L ++  +DL+P +F  
Sbjct: 92  ASEPESYNPNNFWRSMQSATDAFYRFSRPHTVIGTALSILSVSLLAIERLSDLSPLFFTG 151

Query: 153 FLKALLSAVLMNNYVGTVNQVADVEIDKVNKPDLPLASGDLSMGTGLAITLTLSLTSLAI 212
            L+A+++A+ MN Y+  +NQ+ DVEIDKVNKP LPLASG+ S+GTG+ I    ++ S  +
Sbjct: 152 LLEAIVAALFMNIYIVGLNQLFDVEIDKVNKPYLPLASGEYSIGTGILIVAAFAVMSFWL 211

Query: 213 ALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQFSFFIHFQ 272
              + S PL++ L + F+LGTAYS++LP LRWK    +A MC++ V  ++ Q +FF+H Q
Sbjct: 212 GWFVGSGPLLWALSISFILGTAYSINLPLLRWKRFALVAAMCILAVRAVIVQLAFFLHIQ 271

Query: 273 KYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRL 332
            +V  RP ++TRPLIFA A +S  S V++L KDIPD +GD  FG +S + +LG++ V  +
Sbjct: 272 TFVYRRPAILTRPLIFATAFMSFFSVVIALFKDIPDIEGDAIFGIRSFTVRLGQKRVFWI 331

Query: 333 CVYALFFAYGVSVIVGASSSFQLVKLVSIIGHSTLAFLLWLRAQTVDLSNNASTYSFYMF 392
           CVY L  AYGV+V+VGA+S   L KLV+++GH  LA +LWL A++VDL+N  +  SFYMF
Sbjct: 332 CVYLLEMAYGVAVLVGAASPSPLSKLVTVLGHVVLASILWLNAKSVDLTNKTAITSFYMF 391

Query: 393 IWK 395
           IWK
Sbjct: 392 IWK 394

Source: Epimedium acuminatum

Species: Epimedium acuminatum

Genus: Epimedium

Family: Berberidaceae

Order: Ranunculales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|301154093|emb|CBW30171.1| Chlorophyll synthase [Musa balbisiana]

 Score =  287 bits (735), Expect = 6e-75,   Method: Compositional matrix adjust.
 Identities = 138/293 (47%), Positives = 205/293 (69%)

Query: 103 SFWDVLLKKLHALYVFTRPFAMIGTIVGITSIAILPLQSFADLTPKYFMEFLKALLSAVL 162
           S W   L  L+A Y F+RP  +IGTI+ I S+++L ++S  D++P +    L+A+++A+ 
Sbjct: 89  SMWKSALTSLNAFYRFSRPHTVIGTIMSIISVSLLAVESLTDISPSFLTGLLEAVIAALF 148

Query: 163 MNNYVGTVNQVADVEIDKVNKPDLPLASGDLSMGTGLAITLTLSLTSLAIALSLQSPPLI 222
           MN Y+  +NQV D+EIDKVNKP+LPLASG+ S+ TG+A+ LT +  S  +A  + S PL 
Sbjct: 149 MNIYIVGLNQVYDIEIDKVNKPNLPLASGEYSLRTGVAVILTSAAMSFGVAWVVGSLPLF 208

Query: 223 FGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQFSFFIHFQKYVLGRPVVI 282
           + L + F+LGTAYSV+LPFLRWK    +A +C++ V  +V Q +FF+H Q +V  R V  
Sbjct: 209 WALFISFILGTAYSVNLPFLRWKRFAVVAAVCILAVRAVVVQLAFFLHMQTFVFRRSVSF 268

Query: 283 TRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYG 342
           +RPLIFA A +S  S V++L KDIPD +GD+ +G +S S +LG++ V  +CVY L  AY 
Sbjct: 269 SRPLIFATAFMSFFSVVIALFKDIPDIEGDRIYGIRSFSVRLGQKRVFWICVYLLEMAYS 328

Query: 343 VSVIVGASSSFQLVKLVSIIGHSTLAFLLWLRAQTVDLSNNASTYSFYMFIWK 395
           V++++GA+SS    K V+++GH+ LA +LW RA+++DL + A+  SFYMFIWK
Sbjct: 329 VAMVIGATSSCLWSKFVTVLGHAVLASILWKRARSLDLMSKAAITSFYMFIWK 381

Source: Musa balbisiana

Species: Musa balbisiana

Genus: Musa

Family: Musaceae

Order: Zingiberales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|301154114|emb|CBW30209.1| Chlorophyll synthase [Musa balbisiana]

 Score =  287 bits (735), Expect = 6e-75,   Method: Compositional matrix adjust.
 Identities = 138/293 (47%), Positives = 205/293 (69%)

Query: 103 SFWDVLLKKLHALYVFTRPFAMIGTIVGITSIAILPLQSFADLTPKYFMEFLKALLSAVL 162
           S W   L  L+A Y F+RP  +IGTI+ I S+++L ++S  D++P +    L+A+++A+ 
Sbjct: 90  SMWKSALTSLNAFYRFSRPHTVIGTIMSIISVSLLAVESLTDISPSFLTGLLEAVIAALF 149

Query: 163 MNNYVGTVNQVADVEIDKVNKPDLPLASGDLSMGTGLAITLTLSLTSLAIALSLQSPPLI 222
           MN Y+  +NQV D+EIDKVNKP+LPLASG+ S+ TG+A+ LT +  S  +A  + S PL 
Sbjct: 150 MNIYIVGLNQVYDIEIDKVNKPNLPLASGEYSLRTGVAVILTSAAMSFGVAWVVGSLPLF 209

Query: 223 FGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQFSFFIHFQKYVLGRPVVI 282
           + L + F+LGTAYSV+LPFLRWK    +A +C++ V  +V Q +FF+H Q +V  R V  
Sbjct: 210 WALFISFILGTAYSVNLPFLRWKRFAVVAAVCILAVRAVVVQLAFFLHMQTFVFRRSVSF 269

Query: 283 TRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYG 342
           +RPLIFA A +S  S V++L KDIPD +GD+ +G +S S +LG++ V  +CVY L  AY 
Sbjct: 270 SRPLIFATAFMSFFSVVIALFKDIPDIEGDRIYGIRSFSVRLGQKRVFWICVYLLEMAYS 329

Query: 343 VSVIVGASSSFQLVKLVSIIGHSTLAFLLWLRAQTVDLSNNASTYSFYMFIWK 395
           V++++GA+SS    K V+++GH+ LA +LW RA+++DL + A+  SFYMFIWK
Sbjct: 330 VAMVIGATSSCLWSKFVTVLGHAVLASILWKRARSLDLMSKAAITSFYMFIWK 382

Source: Musa balbisiana

Species: Musa balbisiana

Genus: Musa

Family: Musaceae

Order: Zingiberales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|33391138|gb|AAP43911.1| homogentisic acid geranylgeranyl transferase [Hordeum vulgare] gi|326497589|dbj|BAK05884.1| predicted protein [Hordeum vulgare subsp. vulgare]

 Score =  287 bits (734), Expect = 8e-75,   Method: Compositional matrix adjust.
 Identities = 142/313 (45%), Positives = 203/313 (64%), Gaps = 5/313 (1%)

Query: 88  QQGCASNNEDD--INSTSFWDV---LLKKLHALYVFTRPFAMIGTIVGITSIAILPLQSF 142
           Q GC+  N D    N+    ++   +LKKL + Y F RP  + GTI+GITS+++LP++S 
Sbjct: 83  QAGCSEVNWDQNGSNANRLEEIRGDVLKKLRSFYEFCRPHTIFGTIIGITSVSLLPMKSI 142

Query: 143 ADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADVEIDKVNKPDLPLASGDLSMGTGLAIT 202
            D T      +L+AL +A+ MN YV  +NQ+ D++IDK+NKP LPLASG+ S+ TG+ + 
Sbjct: 143 DDFTVTVLRGYLEALTAALCMNIYVVGLNQLYDIQIDKINKPGLPLASGEFSVATGVFLV 202

Query: 203 LTLSLTSLAIALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLV 262
           L   + S +I +   S PL+  LIV FLLG+AYS++ PFLRWK    LA  C++ V  ++
Sbjct: 203 LAFLIMSFSIGIRSGSAPLMCALIVSFLLGSAYSIEAPFLRWKRHALLAASCILFVRAIL 262

Query: 263 YQFSFFIHFQKYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISS 322
            Q +FF H Q++VL RP+  T+ L+FA   +   SAV++L KDIPD DGD+ FG QS+S 
Sbjct: 263 VQLAFFAHMQQHVLKRPLAATKSLVFATLFMCCFSAVIALFKDIPDVDGDRDFGIQSLSV 322

Query: 323 KLGKENVLRLCVYALFFAYGVSVIVGASSSFQLVKLVSIIGHSTLAFLLWLRAQTVDLSN 382
           +LG + V +LC+  L  AYG + +VGASS+    K++++ GH  LA  LW RAQ  ++ N
Sbjct: 323 RLGPQRVYQLCISILLTAYGAATLVGASSTNLFQKIITVSGHGLLALTLWQRAQHFEVEN 382

Query: 383 NASTYSFYMFIWK 395
            A   SFYMFIWK
Sbjct: 383 QARVTSFYMFIWK 395

Source: Hordeum vulgare

Species: Hordeum vulgare

Genus: Hordeum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	400
TAIR|locus:2044440	393	HPT1 "homogentisate phytyltran	0.827	0.842	0.405	2e-63
UNIPROTKB|B1B3P3	410	N8DT-1 "Naringenin 8-dimethyla	0.83	0.809	0.351	9.9e-55
UNIPROTKB|B1B5P4	407	SfN8DT-2 "Naringenin 8-dimethy	0.815	0.800	0.343	8e-53
TAIR|locus:4010713740	393	HST "homogentisate prenyltrans	0.712	0.725	0.290	2.6e-24

TAIR|locus:2044440 HPT1 "homogentisate phytyltransferase 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 647 (232.8 bits), Expect = 2.0e-63, P = 2.0e-63
 Identities = 138/340 (40%), Positives = 200/340 (58%)

Query:    58 YSTNKIKNNENTSSRNCKPFNK--YRVAVTLQQQGCASNNEDDINSTSFWDVLLKKLHAL 115
             +  N ++ +   SS    P +K  +RV  T  Q     +N       SF D     L A 
Sbjct:    48 FRNNLVRPDGQGSSLLLYPKHKSRFRVNATAGQPEAFDSNS---KQKSFRD----SLDAF 100

Query:   116 YVFTRPFAMIGTIVGITSIAILPLQSFADLTPKYFMEFLKALLSAVLMNNYVGTVNQVAD 175
             Y F+RP  +IGT++ I S++ L ++  +D++P  F   L+A+++A++MN Y+  +NQ++D
Sbjct:   101 YRFSRPHTVIGTVLSILSVSFLAVEKVSDISPLLFTGILEAVVAALMMNIYIVGLNQLSD 160

Query:   176 VEIDKVNKPDLPLASGDLSMGTGXXXXXXXXXXXXXXXXXXQSPPLIFGLIVWFLLGTAY 235
             VEIDKVNKP LPLASG+ S+ TG                   S PL + L V F+LGTAY
Sbjct:   161 VEIDKVNKPYLPLASGEYSVNTGIAIVASFSIMSFWLGWIVGSWPLFWALFVSFMLGTAY 220

Query:   236 SVDLPFLRWKTKPFLAGMCMVTVFGLVYQFSFFIHFQKYVLGRPVVITRPLXXXXXXXXX 295
             S++LP LRWK    +A MC++ V  ++ Q +F++H Q +V GRP++ TRPL         
Sbjct:   221 SINLPLLRWKRFALVAAMCILAVRAIIVQIAFYLHIQTHVFGRPILFTRPLIFATAFMSF 280

Query:   296 XXXVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYGVSVIVGASSSFQL 355
                V++L KDIPD +GDK FG +S S  LG++ V   CV  L  AY V+++VGA+S F  
Sbjct:   281 FSVVIALFKDIPDIEGDKIFGIRSFSVTLGQKRVFWTCVTLLQMAYAVAILVGATSPFIW 340

Query:   356 VKLVSIIGHSTLAFLLWLRAQTVDLSNNASTYSFYMFIWK 395
              K++S++GH  LA  LW RA++VDLS+     S YMFIWK
Sbjct:   341 SKVISVVGHVILATTLWARAKSVDLSSKTEITSCYMFIWK 380

GO:0004659 "prenyltransferase activity" evidence=IEA;IDA

GO:0005886 "plasma membrane" evidence=ISM

GO:0010189 "vitamin E biosynthetic process" evidence=IMP;TAS

GO:0016021 "integral to membrane" evidence=IEA

GO:0009507 "chloroplast" evidence=ISS

GO:0010176 "homogentisate phytyltransferase activity" evidence=IMP;IDA

GO:0042362 "fat-soluble vitamin biosynthetic process" evidence=TAS

GO:0009266 "response to temperature stimulus" evidence=IMP

GO:0009915 "phloem sucrose loading" evidence=IMP

GO:0031347 "regulation of defense response" evidence=IMP

GO:0006636 "unsaturated fatty acid biosynthetic process" evidence=RCA;IMP

GO:0071555 "cell wall organization" evidence=IMP

GO:0000096 "sulfur amino acid metabolic process" evidence=RCA

GO:0006546 "glycine catabolic process" evidence=RCA

GO:0006733 "oxidoreduction coenzyme metabolic process" evidence=RCA

GO:0006766 "vitamin metabolic process" evidence=RCA

GO:0008652 "cellular amino acid biosynthetic process" evidence=RCA

GO:0009072 "aromatic amino acid family metabolic process" evidence=RCA

GO:0009106 "lipoate metabolic process" evidence=RCA

GO:0009108 "coenzyme biosynthetic process" evidence=RCA

GO:0009117 "nucleotide metabolic process" evidence=RCA

GO:0009416 "response to light stimulus" evidence=RCA

GO:0009695 "jasmonic acid biosynthetic process" evidence=RCA

GO:0009965 "leaf morphogenesis" evidence=RCA

GO:0015994 "chlorophyll metabolic process" evidence=RCA

GO:0019216 "regulation of lipid metabolic process" evidence=RCA

GO:0019288 "isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway" evidence=RCA

GO:0019748 "secondary metabolic process" evidence=RCA

GO:0030154 "cell differentiation" evidence=RCA

GO:0031408 "oxylipin biosynthetic process" evidence=RCA

GO:0044272 "sulfur compound biosynthetic process" evidence=RCA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

UNIPROTKB|B1B3P3 N8DT-1 "Naringenin 8-dimethylallyltransferase 1, chloroplastic" [Sophora flavescens (taxid:49840)]

 Score = 565 (203.9 bits), Expect = 9.9e-55, P = 9.9e-55
 Identities = 119/339 (35%), Positives = 187/339 (55%)

Query:    58 YSTNKIKNNENTSSRNCKPFNKYRV-AVTLQQQGCASNNEDDINSTSFWDVLLKKLHALY 116
             Y  N+  +  NTS + C+   KY V A++ Q         D     S WD +   L   Y
Sbjct:    65 YKVNEGGSTSNTS-KECE--KKYVVNAISEQSFEYEPQTRDP---ESIWDSVNDALDIFY 118

Query:   117 VFTRPFAMIGTIVGITSIAILPLQSFADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADV 176
              F RP+AM   ++G T  +++ ++  +DL+  +F+ +L+ +++ + ++ +   +NQ+ D+
Sbjct:   119 KFCRPYAMFTIVLGATFKSLVAVEKLSDLSLAFFIGWLQVVVAVICIHIFGVGLNQLCDI 178

Query:   177 EIDKVNKPDLPLASGDLSMGTGXXXXXXXXXXXXXXXXXXQSPPLIFGLIVWFLLGTAYS 236
             EIDK+NKPDLPLASG LS                       S PL + + +  ++ +AY+
Sbjct:   179 EIDKINKPDLPLASGKLSFRNVVIITASSLILGLGFAWIVDSWPLFWTVFISCMVASAYN 238

Query:   237 VDLPFLRWKTKPFLAGMCMVTVFGLVYQFSFFIHFQKYVLGRPVVITRPLXXXXXXXXXX 296
             VDLP LRWK  P L  +  +    +     FF+H Q  V  RP    RPL          
Sbjct:   239 VDLPLLRWKKYPVLTAINFIADVAVTRSLGFFLHMQTCVFKRPTTFPRPLIFCTAIVSIY 298

Query:   297 XXVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYGVSVIVGASSSFQLV 356
               V++L KDIPD +GD++FG QS+S +LG + V  +CV  L   YGV+++VGA+S     
Sbjct:   299 AIVIALFKDIPDMEGDEKFGIQSLSLRLGPKRVFWICVSLLEMTYGVTILVGATSPILWS 358

Query:   357 KLVSIIGHSTLAFLLWLRAQTVDLSNNASTYSFYMFIWK 395
             K+++++GH+ LA +LW  A++VDL++N   +SFYMFIWK
Sbjct:   359 KIITVLGHAVLASVLWYHAKSVDLTSNVVLHSFYMFIWK 397

GO:0004659 "prenyltransferase activity" evidence=IDA

GO:0009507 "chloroplast" evidence=IDA

UNIPROTKB|B1B5P4 SfN8DT-2 "Naringenin 8-dimethylallyltransferase" [Sophora flavescens (taxid:49840)]

 Score = 547 (197.6 bits), Expect = 8.0e-53, P = 8.0e-53
 Identities = 114/332 (34%), Positives = 181/332 (54%)

Query:    65 NNENTSSRNCKPFNKYRV-AVTLQQQGCASNNEDDINSTSFWDVLLKKLHALYVFTRPFA 123
             N   ++S+ C+   KY V A++ Q         D  N    W  +   L   Y F RP+A
Sbjct:    68 NEGGSTSKECE--KKYVVNAISEQSFEYEPQARDPKN---IWGSVNDALDTFYKFCRPYA 122

Query:   124 MIGTIVGITSIAILPLQSFADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADVEIDKVNK 183
             +   ++G T  +++ ++  +DL+  +F+ +L+ +++ + ++ +   +NQ+ D+EIDK+NK
Sbjct:   123 IFSVVLGATFKSLVAVERLSDLSLAFFIGWLQVVVAVICIHIFDVGLNQLCDIEIDKINK 182

Query:   184 PDLPLASGDLSMGTGXXXXXXXXXXXXXXXXXXQSPPLIFGLIVWFLLGTAYSVDLPFLR 243
             PDLPLASG+LS                       S PL + + +  +   AY+VDLP LR
Sbjct:   183 PDLPLASGNLSFRNVVIITASSLILGLGFAWIVGSWPLFWTVFICCMFAAAYNVDLPLLR 242

Query:   244 WKTKPFLAGMCMVTVFGLVYQFSFFIHFQKYVLGRPVVITRPLXXXXXXXXXXXXVMSLL 303
             WK  P L  +  +    +     FF+H Q  V  RP    RPL            V++L 
Sbjct:   243 WKKYPVLTAISFIANVAVTRSLGFFLHMQTCVFKRPTTFPRPLIFCTAIVSIYAIVIALF 302

Query:   304 KDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYGVSVIVGASSSFQLVKLVSIIG 363
             KDIPD +GD++FG QS+S +LG + V  +CV  L  AYGV+++VGA+S     K+++++G
Sbjct:   303 KDIPDMEGDEKFGIQSLSLRLGPKRVFWICVSLLEMAYGVTILVGATSPILWSKIITVLG 362

Query:   364 HSTLAFLLWLRAQTVDLSNNASTYSFYMFIWK 395
             H+ LA +LW  A++ DL++N    SFYMFIWK
Sbjct:   363 HAILASVLWYHAKSTDLTSNVVLQSFYMFIWK 394

GO:0004659 "prenyltransferase activity" evidence=IDA

GO:0009507 "chloroplast" evidence=IDA

TAIR|locus:4010713740 HST "homogentisate prenyltransferase" [Arabidopsis thaliana (taxid:3702)]

 Score = 278 (102.9 bits), Expect = 2.6e-24, P = 2.6e-24
 Identities = 85/293 (29%), Positives = 135/293 (46%)

Query:   106 DVLLKKLHALYVFTRPFAMIGTIVGITSIAILPLQSFADLTP-KYFMEFLKALLSAVLMN 164
             D + +  +A + F RP  + GT +G T++    L     L      ++ L  LL+ +  N
Sbjct:    92 DRIARFQNACWRFLRPHTIRGTALGSTALVTRALIENTHLIKWSLVLKALSGLLALICGN 151

Query:   165 NYVGTVNQVADVEIDKVNKPDLPLASGDLSMGTGXXXXXXXXXXXXXXXXXXQSPPLIFG 224
              Y+  +NQ+ D+ IDKVNKP LP+A+GDLS+ +                     P +   
Sbjct:   152 GYIVGINQIYDIGIDKVNKPYLPIAAGDLSVQSAWLLVIFFAIAGLLVVGFNFGPFITSL 211

Query:   225 LIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQFSFFIHFQKYVLGRPVVITR 284
               +   LGT YSV  P LR K  P  A + + TV G +  F  + H  +  LG P   + 
Sbjct:   212 YSLGLFLGTIYSV--PPLRMKRFPVAAFLIIATVRGFLLNFGVY-HATRAALGLPFQWSA 268

Query:   285 PLXXXXXXXXXXXXVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYGVS 344
             P+            V+++ KD+PD +GD++F   ++++KLG  N+  L    L   Y VS
Sbjct:   269 PVAFITSFVTLFALVIAITKDLPDVEGDRKFQISTLATKLGVRNIAFLGSGLLLVNY-VS 327

Query:   345 VIVGASSSFQLVK-LVSIIGHSTLAFLLWLRAQTVDLSN--NASTYSFYMFIW 394
              I  A    Q+ +  + I  H  LA  L  +   ++ +N    +   +Y FIW
Sbjct:   328 AISLAFYMPQVFRGSLMIPAHVILASGLIFQTWVLEKANYTKEAISGYYRFIW 380


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.324   0.138   0.419    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      400       364   0.00083  117 3  11 22  0.47    33
                                                     34  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  4
  No. of states in DFA:  605 (64 KB)
  Total size of DFA:  236 KB (2128 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  30.29u 0.10s 30.39t   Elapsed:  00:00:01
  Total cpu time:  30.30u 0.10s 30.40t   Elapsed:  00:00:01
  Start:  Mon May 20 23:02:05 2013   End:  Mon May 20 23:02:06 2013

GO:0004161 "dimethylallyltranstransferase activity" evidence=NAS

GO:0004659 "prenyltransferase activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM

GO:0016021 "integral to membrane" evidence=IEA

GO:0010236 "plastoquinone biosynthetic process" evidence=IMP

GO:0010355 "homogentisate farnesyltransferase activity" evidence=IDA

GO:0010356 "homogentisate geranylgeranyltransferase activity" evidence=IDA

GO:0010357 "homogentisate solanesyltransferase activity" evidence=IDA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0009536 "plastid" evidence=IDA

GO:0016117 "carotenoid biosynthetic process" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8VWJ1	HPT1_ARATH	2, ., 5, ., 1, ., n, 8	0.4210	0.87	0.8854	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.5.1	LOW CONFIDENCE prediction!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	400
PLN02878	280	PLN02878, PLN02878, homogentisate phytyltransferas	1e-111
PRK12887	308	PRK12887, ubiA, tocopherol phytyltransferase; Revi	1e-62
pfam01040	259	pfam01040, UbiA, UbiA prenyltransferase family	1e-23
COG0382	289	COG0382, UbiA, 4-hydroxybenzoate polyprenyltransfe	1e-18
TIGR01476	283	TIGR01476, chlor_syn_BchG, bacteriochlorophyll/chl	1e-11
PRK07566	314	PRK07566, PRK07566, bacteriochlorophyll/chlorophyl	2e-09
PRK12882	276	PRK12882, ubiA, prenyltransferase; Reviewed	2e-09
PRK12884	279	PRK12884, ubiA, prenyltransferase; Reviewed	7e-08
PRK09573	279	PRK09573, PRK09573, (S)-2,3-di-O-geranylgeranylgly	2e-07
PRK12883	277	PRK12883, ubiA, prenyltransferase UbiA-like protei	6e-07
PRK12872	285	PRK12872, ubiA, prenyltransferase; Reviewed	1e-06
PRK12324	295	PRK12324, PRK12324, phosphoribose diphosphate:deca	3e-05
PRK12875	282	PRK12875, ubiA, prenyltransferase; Reviewed	4e-05
TIGR02056	306	TIGR02056, ChlG, chlorophyll synthase, ChlG	7e-05
PRK08238	479	PRK08238, PRK08238, hypothetical protein; Validate	2e-04
PLN00012	375	PLN00012, PLN00012, chlorophyll synthetase; Provis	4e-04

>gnl|CDD|178466 PLN02878, PLN02878, homogentisate phytyltransferase

 Score =  327 bits (841), Expect = e-111
 Identities = 134/267 (50%), Positives = 189/267 (70%)

Query: 129 VGITSIAILPLQSFADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADVEIDKVNKPDLPL 188
           +GITS+++L ++S +D +P +F   L+AL+ A+LMN Y+  +NQ+ D+EIDKVNKP LPL
Sbjct: 1   LGITSVSLLAVESLSDFSPLFFTGLLEALVPALLMNIYIVGLNQLYDIEIDKVNKPYLPL 60

Query: 189 ASGDLSMGTGLAITLTLSLTSLAIALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKP 248
           ASG+ S+ TG+AI  + ++ S  +   + S PL + L V F+LGTAYS++LP LRWK   
Sbjct: 61  ASGEFSVATGVAIVTSFAIMSFGMGWIVGSWPLFWALFVSFVLGTAYSINLPLLRWKRSA 120

Query: 249 FLAGMCMVTVFGLVYQFSFFIHFQKYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPD 308
             A  C++ V  +V Q +FF+H Q +VLGRP V TRPLIFA A +   S V++L KDIPD
Sbjct: 121 VAAASCILAVRAVVVQLAFFLHMQTHVLGRPAVFTRPLIFATAFMCFFSVVIALFKDIPD 180

Query: 309 EDGDKQFGFQSISSKLGKENVLRLCVYALFFAYGVSVIVGASSSFQLVKLVSIIGHSTLA 368
            +GD+ FG +S S +LG++ V  LCV  L  AY  +++VGASSSF   K+++++GH  LA
Sbjct: 181 VEGDRIFGIRSFSVRLGQKRVFWLCVNLLEMAYAAAILVGASSSFLWSKIITVLGHGILA 240

Query: 369 FLLWLRAQTVDLSNNASTYSFYMFIWK 395
            +LW RAQ+VDLS+ A+  SFYMFIWK
Sbjct: 241 SILWQRAQSVDLSSKAAITSFYMFIWK 267

Length = 280

>gnl|CDD|183813 PRK12887, ubiA, tocopherol phytyltransferase; Reviewed

 Score =  203 bits (519), Expect = 1e-62
 Identities = 100/299 (33%), Positives = 159/299 (53%), Gaps = 9/299 (3%)

Query: 100 NSTSFWDVLLKKLHALYVFTRPFAMIGT---IVGITSIAILPLQSFADLTPKYFMEFLKA 156
              +    +   L+AL+ F+RP  +IGT   ++G+  IAI    +   L        L A
Sbjct: 1   LPKNPLQPMTSWLYALWKFSRPHTIIGTSLSVLGLYLIAIAASSNTIALA--NLGLLLGA 58

Query: 157 LLSAVLMNNYVGTVNQVADVEIDKVNKPDLPLASGDLSMGTGLAITLTLSLTSLAIALSL 216
            ++ +  N Y+  +NQ+ D+EID++NKP LPLA+G+ S   G  I +   + +L +A  L
Sbjct: 59  WIACLCGNVYIVGLNQLTDIEIDRINKPHLPLAAGEFSRRQGQRIVIITGILALILAA-L 117

Query: 217 QSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQFSFFIHFQKYVL 276
             P L+  + +  L+GTAYS  LP +R K  P LA +C+ TV G++     F+HFQ ++L
Sbjct: 118 LGPWLLITVGISLLIGTAYS--LPPIRLKRFPLLAALCIFTVRGVIVNLGLFLHFQ-WLL 174

Query: 277 GRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYA 336
           G  V+I   +      +   +  +++ KDIPD +GD+Q+   + + +LGK+ V +L  + 
Sbjct: 175 GGSVLIPPTVWLLTLFVLVFTFAIAIFKDIPDMEGDRQYQITTFTLRLGKQAVFKLSCWV 234

Query: 337 LFFAYGVSVIVGASSSFQLVKLVSIIGHSTLAFLLWLRAQTVDLSNNASTYSFYMFIWK 395
           L   Y   + VG  S   +     I+ H  L  LLW R+Q VDL +  +   FY FIWK
Sbjct: 235 LTACYLGMIAVGLLSLPTVNPAFLIVSHLILLALLWWRSQRVDLQDKQAIAQFYQFIWK 293

Length = 308

>gnl|CDD|216260 pfam01040, UbiA, UbiA prenyltransferase family

 Score = 98.4 bits (245), Expect = 1e-23
 Identities = 71/250 (28%), Positives = 111/250 (44%), Gaps = 18/250 (7%)

Query: 153 FLKALLSAVLMNNYVGTVNQVADVEIDKV--NKPDLPLASGDLSMGTGLAITLTLSLTSL 210
            L  LL+ +L+      +N   D EID    NKPD PL SG +S    L + L L L  L
Sbjct: 25  LLLLLLALLLLQAAGNVLNDYFDYEIDADNPNKPDRPLPSGRISPREALLLGLALLLLGL 84

Query: 211 AIALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQFSFFIH 270
            +AL L    L+ GL+    LG  YS   P LR K +P L  + +   FGL+        
Sbjct: 85  LLALLLGPLLLLLGLLGLL-LGLLYS---PPLRLKRRPLLGELVVGLAFGLLILLGA--- 137

Query: 271 FQKYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVL 330
              Y +G    I  PL+  A  +  +S  + L  DI D +GD++ G +++  +LG++  L
Sbjct: 138 ---YAVGG--DIPSPLLLLALPVFLLSLAILLTNDIRDVEGDRKAGIRTLPVRLGRKRAL 192

Query: 331 RLCVYALFFAYGVSVIVGASSSFQLVKLVSIIGHSTLAFLLWLRAQTVDLSNNASTYSFY 390
            L    L  A  + +++    +     L+ ++    LA  L + A+ +   N       +
Sbjct: 193 ALYALLLAAALLLLLLLLLLLAP----LLLLLAVLLLALALLVAARLLRRRNPEEPARTF 248

Query: 391 MFIWKAIVLC 400
           +FI     L 
Sbjct: 249 LFIALLFGLL 258

Length = 259

>gnl|CDD|223459 COG0382, UbiA, 4-hydroxybenzoate polyprenyltransferase and related prenyltransferases [Coenzyme metabolism]

 Score = 85.0 bits (211), Expect = 1e-18
 Identities = 69/296 (23%), Positives = 117/296 (39%), Gaps = 25/296 (8%)

Query: 107 VLLKKLHALYVFTRPFAMIGTIVGITSIAILPLQSFADLTPKYFMEFLKALLSAVLMNNY 166
             LK L  L    RP   +  ++      +L       L        L A L+  L  + 
Sbjct: 8   NKLKALLKLLRLDRPIFNLLLLLPALLGLLLAASGLPSLKL-----LLLAFLAFFLARSA 62

Query: 167 VGTVNQVADVEIDKVNKP--DLPLASGDLSMGTGLAITLTLSLTSLAIALSLQSPPLIFG 224
              +N +AD EID++N    + PL SG +S+   L + + L L  LA+AL L     +  
Sbjct: 63  GYVINDLADREIDRINPRTKNRPLPSGRVSVKEALLLAILLLLLGLALALLLNPLAFLLS 122

Query: 225 LIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQFSFFIHFQKYVLGRPVVITR 284
           L    +L  AY         K   FL  + +   FGL                  + +  
Sbjct: 123 LA-ALVLALAY------PFLKRFTFLPQLVLGLAFGLGALAGAAAVGGS------LPLLA 169

Query: 285 PLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYGVS 344
            L+  AAI+ T+     ++  I D +GD++ G +S+    G +  L L    L  A  + 
Sbjct: 170 WLLLLAAILWTLG--YDIIYAIQDIEGDRKAGLKSLPVLFGIKKALALA-LLLLLASALL 226

Query: 345 VIVGASSSFQLVKLVSIIGHSTLAFLLWLRAQTVDLSNNASTYSFYMFIWKAIVLC 400
           V++G      L+ L+ ++G    A LL  +   VD+ +  + ++ +       +L 
Sbjct: 227 VLLGL--LAGLLGLIYLLGLLVAALLLLYQILIVDVRDPPACFALFDVNLLLGLLL 280

Length = 289

>gnl|CDD|130541 TIGR01476, chlor_syn_BchG, bacteriochlorophyll/chlorophyll synthetase

 Score = 64.4 bits (157), Expect = 1e-11
 Identities = 41/193 (21%), Positives = 76/193 (39%), Gaps = 34/193 (17%)

Query: 154 LKALLSAVLMNNYVGTVNQVADVEIDKVNKPDLPLASGDLSMGTGLAITLTLSLTSLAIA 213
           L  L++  L   +  ++N   D ++D +N+P  P+ SG +S+       L L++  L +A
Sbjct: 41  LGMLMAGPLGTGFSQSINDYFDRDVDAINEPQRPIPSGIISLREVRWNWLVLTVAGLLVA 100

Query: 214 LSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTK----PFLAGMCMVT--------VFGL 261
           L L +  ++   +V  +L   YS+  P ++ K      P   G+            +F  
Sbjct: 101 LVLGNWLIVLFTVVGIVLAVIYSM--PPIKLKRNGWLGPPAVGLSYEGLPWMAGHAIFA- 157

Query: 262 VYQFSFFIHFQKYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSIS 321
               ++            VV+       A  I T       L D    +GD+Q G +S+ 
Sbjct: 158 --PLTWQS----------VVVALIYSLGAHGIMT-------LNDFKSVEGDRQLGLRSLP 198

Query: 322 SKLGKENVLRLCV 334
             +G +    + V
Sbjct: 199 VMIGVKRAAIVAV 211

This model describes a subfamily of a large family of polyprenyltransferases (pfam01040) that also includes 4-hydroxybenzoate octaprenyltransferase and protoheme IX farnesyltransferase (heme O synthase). Members of this family are found exclusively in photosynthetic organisms, including a single copy in Arabidopsis thaliana [Biosynthesis of cofactors, prosthetic groups, and carriers, Chlorophyll and bacteriochlorphyll]. Length = 283

>gnl|CDD|236052 PRK07566, PRK07566, bacteriochlorophyll/chlorophyll a synthase; Reviewed

 Score = 58.0 bits (141), Expect = 2e-09
 Identities = 46/185 (24%), Positives = 81/185 (43%), Gaps = 23/185 (12%)

Query: 157 LLSAVLMNNYVGTVNQVADVEIDKVNKPDLPLASGDLSMGTGLAITLTLSLTSLAIALSL 216
           LL+  L+     T+N   D E+D +N+P  P+ SG +S+   L +   L++  LA+A  L
Sbjct: 71  LLAGPLLCGTSQTLNDYFDREVDAINEPYRPIPSGAISLRWVLYLIAVLTVLGLAVAYLL 130

Query: 217 QSPPLIFGL-IVWFLLGTAYSVDLPFLRWKTK----PFLAGMCMVTVFGLVYQFSFFIHF 271
              P +F   ++   L   YS   P LR K       +  G+    +       +F    
Sbjct: 131 G--PWVFLAALLGLFLAWIYSA--PPLRLKQNGWLGNYAVGLSYEGLPWWAGAAAF---- 182

Query: 272 QKYVLGRPVVITRPLIFAAAIISTISA--VMSLLKDIPDEDGDKQFGFQSISSKLGKENV 329
                    + + P I   A++ ++ A  +M+ L D    +GD+Q G +S+    G++N 
Sbjct: 183 ------GAGLPSWP-IVILALLYSLGAHGIMT-LNDFKSVEGDRQLGLRSLPVVFGEKNA 234

Query: 330 LRLCV 334
            R+  
Sbjct: 235 ARIAC 239

Length = 314

>gnl|CDD|183811 PRK12882, ubiA, prenyltransferase; Reviewed

 Score = 57.3 bits (139), Expect = 2e-09
 Identities = 49/196 (25%), Positives = 86/196 (43%), Gaps = 18/196 (9%)

Query: 169 TVNQVADVEIDKVNKPDLPLASGDLSMGTGLAITLTLSLTSLAIALSLQSPPLIFGLI-- 226
            +N   D EID++N+PD P+ SG +S    LA ++ L    +A+A  L    L   L   
Sbjct: 56  AINDYFDREIDRINRPDRPIPSGAVSPRGALAFSILLFAAGVALAFLLPPLCLAIALFNS 115

Query: 227 VWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQFSFFIHFQKYVLGRPVVITRPL 286
           +  +L        P L   +  +L G             S F+ F    +G   ++   +
Sbjct: 116 LLLVLYAETLKGTPGLGNASVAYLTG-------------STFL-FGGAAVGTEGLLALLV 161

Query: 287 IFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYGVSVI 346
           +FA A ++T++    ++KD+ D +GD+  G +++   +G    L +    L  A   S +
Sbjct: 162 LFALAALATLA--REIIKDVEDIEGDRAEGARTLPILIGVRKALYVAAAFLLVAVAASPL 219

Query: 347 VGASSSFQLVKLVSII 362
               S+F L  LV + 
Sbjct: 220 PYLLSTFGLWYLVLVA 235

Length = 276

>gnl|CDD|183812 PRK12884, ubiA, prenyltransferase; Reviewed

 Score = 53.0 bits (128), Expect = 7e-08
 Identities = 46/200 (23%), Positives = 86/200 (43%), Gaps = 20/200 (10%)

Query: 148 KYFMEFLKALL---SAVLMNNYVGTVNQVADVEIDKVNKPDLPLASGDLSMGTGLAITLT 204
              +   +ALL   +A   +     +N   D E+D++N+PD P+ SG +S    L + + 
Sbjct: 31  LGGLPLDEALLGFLTAFFASGSANALNDYFDYEVDRINRPDRPIPSGRISRREALLLAIL 90

Query: 205 LSLTSLAIALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQ 264
           L +  L  A  +     +  ++V  +LG  Y+  L     K    +  + +  + G+   
Sbjct: 91  LFILGLIAAYLISPLAFLVVILVS-VLGILYNWKL-----KEYGLIGNLYVAFLTGMT-- 142

Query: 265 FSFFIHFQKYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKL 324
              FI F    +G        L+ A A + T+     ++KDI D +GD+  G ++++   
Sbjct: 143 ---FI-FGGIAVGELNEAVI-LLAAMAFLMTLGR--EIMKDIEDVEGDRLRGARTLAILY 195

Query: 325 GKENVLRLCVYALFFAYGVS 344
           G++   R+   A  F   V 
Sbjct: 196 GEKIAGRIA--AALFILAVL 213

Length = 279

>gnl|CDD|181963 PRK09573, PRK09573, (S)-2,3-di-O-geranylgeranylglyceryl phosphate synthase; Reviewed

 Score = 51.5 bits (124), Expect = 2e-07
 Identities = 51/228 (22%), Positives = 98/228 (42%), Gaps = 20/228 (8%)

Query: 170 VNQVADVEIDKVNKPDLPLASGDLSMGTGLAITLTLSLTSLAIALSLQSPPLIFGLIVWF 229
           +N + D+EIDK+NKP+ P+ SG +S+      ++TL +  L +++ +     +  L+   
Sbjct: 56  INDIYDIEIDKINKPERPIPSGRISLKEAKIFSITLFIVGLILSIFINIYAFLIALLNSI 115

Query: 230 LLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQFSFFIHFQKYVLGRPVVITRPLIFA 289
           LL   Y+ DL     K    +  + +  + GL + F     F        ++I     F 
Sbjct: 116 LL-YLYAKDL-----KKTGLIGNLIVAYLTGLSFIFGGLAVFNVL----RIIILFLCAFF 165

Query: 290 AAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYGVSVIVGA 349
           +     I      +KDI D +GD +    ++  K G +    +    L  A  +S +   
Sbjct: 166 STWSREI------VKDIEDIEGDLKENVITLPIKYGIKKSWYIAKILLILAIVLSPLPYF 219

Query: 350 SSSFQLVKLVSIIGHS---TLAFLLWLRAQTVDLSNNASTYS-FYMFI 393
              F +  L+ +I       +A L+ L+  +++ ++ AS Y    M +
Sbjct: 220 LGIFGIYYLIVVIICDILFIIAMLILLKNPSIEGASKASKYLKIIMIL 267

Length = 279

>gnl|CDD|171796 PRK12883, ubiA, prenyltransferase UbiA-like protein; Reviewed

 Score = 50.1 bits (120), Expect = 6e-07
 Identities = 68/257 (26%), Positives = 108/257 (42%), Gaps = 49/257 (19%)

Query: 111 KLHALYVFTRPF-AMIGTIVGITSIAILPLQSFADLTPKYFMEFLKALLSAVLMNNYVGT 169
           +L A    TRP   ++  IVGI   +++ L     +     + FL   L     N    T
Sbjct: 2   ELKAFIEITRPHNCILAGIVGILG-SLVALGGIPPIK-TLILIFLVVYLGCSGGN----T 55

Query: 170 VNQVADVEIDKVNKPDLPLASGDLSMGTGLAITLTLSLTSLAIALSLQSPPLIFGLIVWF 229
           +N   D EIDK+N+P+ PL  G +S    L  +L L    LA+A  +     +F L  + 
Sbjct: 56  INDYFDYEIDKINRPNRPLPRGAMSRKAALYYSLLLFAVGLALAYLINIEAFLFALGAYV 115

Query: 230 LLGTAYSVDLPFL-RWKTKPF-------LAGMCMVT-VFGLVYQFSFFIHFQKYVLGRPV 280
           L+         FL  WK KP        +A +   T ++G +             +GR +
Sbjct: 116 LM---------FLYAWKLKPLPFIGNVVVALLTGATPIYGAI------------AVGR-I 153

Query: 281 VITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFA 340
            +   L   A +++    +M   KDI D +GDK  G +++   +GK+   R       F 
Sbjct: 154 GLAGYLAICAFLVNVAREIM---KDIEDIEGDKAKGAKTLPIIIGKK---RAAYIGAIFG 207

Query: 341 YGVSVIVGASSSFQLVK 357
             ++VI    +SF  VK
Sbjct: 208 V-LTVI----ASFLPVK 219

Length = 277

>gnl|CDD|237241 PRK12872, ubiA, prenyltransferase; Reviewed

 Score = 49.2 bits (118), Expect = 1e-06
 Identities = 53/252 (21%), Positives = 99/252 (39%), Gaps = 22/252 (8%)

Query: 122 FAMIGTIVGITSIAILPLQSFADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADVEIDKV 181
            A +G  +   +  +L L     L           LL   L+   V  +N + D+E D +
Sbjct: 18  IAALGQSLVYMASLLLGLPISWLL-----------LLITFLIAAAVYIINYLTDLEEDII 66

Query: 182 NKPDLPLASGDLSMGTGLAITLTLSLTSLAIALSLQSPPLIFGLIVWFLLGTAYSVDLPF 241
           NKP+  + S   + G  L + +        +   +  P      I+  +LG  YSV    
Sbjct: 67  NKPERVVFSETKAYGLFLLLNVLGLYLGAYLLAVIGGPKFALIFIIPLILGILYSVFF-K 125

Query: 242 LRWKTKPFLAGMCMVTVFGLVYQFSFFIHFQKYVLGRPVVITRPLIFAAAIISTISAVMS 301
            R K  P    + +  ++ L        ++Q         I   L+  A  I   S +  
Sbjct: 126 RRLKRIPLFKNLVVSLLWALSPLILGVYYYQLT-------IFSLLLLYAVFIFLKSFIRE 178

Query: 302 LLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYGVSVIVGASSSFQLVKLVSI 361
           ++ DI D +GD++ G +++   LGKE  L+  +        + ++   +    L+ LV +
Sbjct: 179 IVFDIKDIEGDRKSGLKTLPIVLGKERTLKFLLILNLLFLILLILGVYTGLLPLLLLVLL 238

Query: 362 IGHSTLAFLLWL 373
           +    LA++L+ 
Sbjct: 239 LL---LAYVLYY 247

Length = 285

>gnl|CDD|237058 PRK12324, PRK12324, phosphoribose diphosphate:decaprenyl-phosphate phosphoribosyltransferase; Provisional

 Score = 45.2 bits (108), Expect = 3e-05
 Identities = 27/69 (39%), Positives = 41/69 (59%), Gaps = 3/69 (4%)

Query: 170 VNQVADVEIDKV--NKPDLPLASGDLSMGTGLAITLTLSLTSLAIALSLQSPPLIFGLIV 227
           VN + DVE D++   K + P+ASG +S+     + + L + SLA+A  L SP L   L+V
Sbjct: 65  VNDIRDVEADRLHPTKRNRPIASGVVSVSLAYILAVVLLVASLALAY-LLSPKLALVLLV 123

Query: 228 WFLLGTAYS 236
           + +L  AYS
Sbjct: 124 YLVLNLAYS 132

Length = 295

>gnl|CDD|237243 PRK12875, ubiA, prenyltransferase; Reviewed

 Score = 44.6 bits (106), Expect = 4e-05
 Identities = 61/257 (23%), Positives = 94/257 (36%), Gaps = 60/257 (23%)

Query: 115 LYVFTRP---FAMIGT-IVGITSIAILPLQSFADL-TPKYFMEFLKALLSAVLMNNYVGT 169
           L V +RP     + G  +VG+   A     S ADL +P     F   L  A   N ++  
Sbjct: 11  LLVLSRPRFWLYLAGPVVVGVAYAA----DSVADLFSPAAVALFAYFLFPA---NVFLYG 63

Query: 170 VNQVADVEIDKVN--KPDLPLASGDLSMGTGLAITLTLSLTSLAIALSLQSPPL-IFGLI 226
           VN V D + D++N  K               + + + LS  +LA+A  L  PP     L+
Sbjct: 64  VNDVFDADTDELNPKKDREREVR--YRGDRRVLVAVALS-GALALAFLLVLPPAAWPALL 120

Query: 227 VWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQFSFFIHFQKYVLGRPVVITRPL 286
            + +L   YS   P LR+KT P L                  +    Y+L        P 
Sbjct: 121 AFLVLSVEYSA--PPLRFKTTPVLD----------------SLSNGLYIL--------PG 154

Query: 287 IFAAAIIS----TISAV---------MSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLC 333
           + A A++S     + AV         M     IPD + D+  G ++ ++ LG+      C
Sbjct: 155 VAAYALVSGSLPPLLAVAGGWLWAMGMHTFSAIPDIEPDRAAGIRTTATVLGERRTYAYC 214

Query: 334 VYALFFAYGVSVIVGAS 350
                     +    A 
Sbjct: 215 ---AACWLLAAAAFAAV 228

Length = 282

>gnl|CDD|131111 TIGR02056, ChlG, chlorophyll synthase, ChlG

 Score = 43.8 bits (103), Expect = 7e-05
 Identities = 44/186 (23%), Positives = 80/186 (43%), Gaps = 14/186 (7%)

Query: 157 LLSAVLMNNYVGTVNQVADVEIDKVNKPDLPLASGDLSMGTGLAITLTLSLTSLAIALSL 216
           LLS   +  Y  T+N   D +ID +N+P  P+ SG +S    +   + L +  +AIA  L
Sbjct: 60  LLSGPCLTGYTQTINDFYDRDIDAINEPYRPIPSGAISEPEVITQIVLLFIAGIAIAFIL 119

Query: 217 -----QSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQFSFFIHF 271
                   P +F L ++     A+    P L+ K   +L    +   +  +  ++    F
Sbjct: 120 DLWAGHEFPNVFVLALFGSF-IAFIYSAPPLKLKQNGWLGNFALGASYIALPWWAGHALF 178

Query: 272 QKYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLR 331
            +     P +    LI++ A +      ++++ D    +GD+  G QS+    G E    
Sbjct: 179 GEL---NPDIAVLTLIYSIAGLG-----IAIVNDFKSVEGDRALGLQSLPVAFGIETAAW 230

Query: 332 LCVYAL 337
           +CV A+
Sbjct: 231 ICVGAI 236

This model represents the strictly cyanobacterial and plant-specific chlorophyll synthase ChlG. ChlG is the enzyme (esterase) which attaches the side chain moiety onto chlorophyllide a. Both geranylgeranyl and phytyl pyrophosphates are substrates to varying degrees in enzymes from different sources. Thus, ChlG may act as the final or penultimate step in chlorophyll biosynthesis (along with the geranylgeranyl reductase, ChlP) [Biosynthesis of cofactors, prosthetic groups, and carriers, Chlorophyll and bacteriochlorphyll]. Length = 306

>gnl|CDD|236195 PRK08238, PRK08238, hypothetical protein; Validated

 Score = 43.3 bits (103), Expect = 2e-04
 Identities = 30/80 (37%), Positives = 41/80 (51%), Gaps = 9/80 (11%)

Query: 159 SAVLMNNYVGTVNQVADVEIDK--VNKPDLPLASGDLSMGTGLAITLTLSLTSLAIALSL 216
           SAV    Y+  +N + D+E D+    K   P ASG L +  GLA    L L  LA+AL+L
Sbjct: 240 SAV----YI--LNDLLDLEADRAHPRKRRRPFASGALPIPFGLAAAPLLLLAGLALALAL 293

Query: 217 QSPPLIFGLIVWFLLGTAYS 236
             P  +  L+ +  L  AYS
Sbjct: 294 -GPAFLLVLLAYLALTLAYS 312

Length = 479

>gnl|CDD|215028 PLN00012, PLN00012, chlorophyll synthetase; Provisional

 Score = 41.8 bits (98), Expect = 4e-04
 Identities = 53/209 (25%), Positives = 81/209 (38%), Gaps = 60/209 (28%)

Query: 157 LLSAVLMNNYVGTVNQVADVEIDKVNKPDLPLASGDLSM-------------GTGLAITL 203
           L+S   +  Y  T+N   D EID +N+P  P+ SG +S              G GLA TL
Sbjct: 129 LMSGPFLTGYTQTINDWYDREIDAINEPYRPIPSGAISENEVITQIWVLLLGGLGLAYTL 188

Query: 204 -------TLSLTSLAIALSLQS-----PPLIF---GLIVWFLLGTAYSVDLPFLRWKTKP 248
                     +  LA+  SL S     PPL     G I  + LG +Y + LP+  W    
Sbjct: 189 DVWAGHDFPIVFYLALGGSLLSYIYSAPPLKLKQNGWIGNYALGASY-ISLPW--W---- 241

Query: 249 FLAGMCMVTVFGLVYQFSFFIHFQKYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPD 308
             AG     +FG                     +T  ++    + S     ++++ D   
Sbjct: 242 --AGQ---ALFG--------------------TLTPDVVVLTLLYSIAGLGIAIVNDFKS 276

Query: 309 EDGDKQFGFQSISSKLGKENVLRLCVYAL 337
            +GD+  G QS+    G E    +CV ++
Sbjct: 277 IEGDRALGLQSLPVAFGVETAKWICVGSI 305

Length = 375

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	400
PLN02878	280	homogentisate phytyltransferase	100.0
PRK12887	308	ubiA tocopherol phytyltransferase; Reviewed	100.0
PRK12895	286	ubiA prenyltransferase; Reviewed	100.0
PRK13106	300	ubiA prenyltransferase; Reviewed	100.0
TIGR01475	282	ubiA_other putative 4-hydroxybenzoate polyprenyltr	100.0
PRK12874	291	ubiA prenyltransferase; Reviewed	100.0
PRK12870	290	ubiA 4-hydroxybenzoate polyprenyltransferase; Revi	100.0
PRK12882	276	ubiA prenyltransferase; Reviewed	100.0
TIGR01476	283	chlor_syn_BchG bacteriochlorophyll/chlorophyll syn	100.0
PLN02809	289	4-hydroxybenzoate nonaprenyltransferase	100.0
PRK09573	279	(S)-2,3-di-O-geranylgeranylglyceryl phosphate synt	100.0
PRK07566	314	bacteriochlorophyll/chlorophyll a synthase; Review	100.0
PLN00012	375	chlorophyll synthetase; Provisional	100.0
PRK12888	284	ubiA prenyltransferase; Reviewed	100.0
PRK12884	279	ubiA prenyltransferase; Reviewed	100.0
PRK12886	291	ubiA prenyltransferase; Reviewed	100.0
PRK12847	285	ubiA 4-hydroxybenzoate polyprenyltransferase; Revi	100.0
PRK12848	282	ubiA 4-hydroxybenzoate octaprenyltransferase; Revi	100.0
COG0382	289	UbiA 4-hydroxybenzoate polyprenyltransferase and r	100.0
PRK12876	300	ubiA prenyltransferase; Reviewed	100.0
PRK05951	296	ubiA prenyltransferase; Reviewed	100.0
PRK12392	331	bacteriochlorophyll c synthase; Provisional	100.0
PRK12878	314	ubiA 4-hydroxybenzoate polyprenyltransferase; Revi	100.0
TIGR02056	306	ChlG chlorophyll synthase, ChlG. This model repres	100.0
PRK12873	294	ubiA prenyltransferase; Reviewed	100.0
TIGR01474	281	ubiA_proteo 4-hydroxybenzoate polyprenyl transfera	100.0
PRK12869	279	ubiA protoheme IX farnesyltransferase; Reviewed	100.0
PRK12883	277	ubiA prenyltransferase UbiA-like protein; Reviewed	100.0
PRK06080	293	1,4-dihydroxy-2-naphthoate octaprenyltransferase;	100.0
PRK04375	296	protoheme IX farnesyltransferase; Provisional	100.0
PRK13595	292	ubiA prenyltransferase; Provisional	99.98
PRK13387	317	1,4-dihydroxy-2-naphthoate octaprenyltransferase;	99.97
TIGR01473	280	cyoE_ctaB protoheme IX farnesyltransferase. This m	99.97
PRK13362	306	protoheme IX farnesyltransferase; Provisional	99.97
PLN02922	315	prenyltransferase	99.97
PRK07419	304	1,4-dihydroxy-2-naphthoate octaprenyltransferase;	99.97
TIGR00751	284	menA 1,4-dihydroxy-2-naphthoate octaprenyltransfer	99.97
PRK12871	297	ubiA prenyltransferase; Reviewed	99.96
TIGR02235	285	menA_cyano-plnt 1,4-dihydroxy-2-naphthoate phytylt	99.96
PRK13105	282	ubiA prenyltransferase; Reviewed	99.96
COG1575	303	MenA 1,4-dihydroxy-2-naphthoate octaprenyltransfer	99.96
PRK12872	285	ubiA prenyltransferase; Reviewed	99.95
PF01040	257	UbiA: UbiA prenyltransferase family; InterPro: IPR	99.95
KOG1381	353	consensus Para-hydroxybenzoate-polyprenyl transfer	99.94
PRK12875	282	ubiA prenyltransferase; Reviewed	99.94
PRK13591	307	ubiA prenyltransferase; Provisional	99.94
PLN02776	341	prenyltransferase	99.93
COG0109	304	CyoE Polyprenyltransferase (cytochrome oxidase ass	99.93
PRK13592	299	ubiA prenyltransferase; Provisional	99.92
PRK08238	479	hypothetical protein; Validated	99.87
PRK12324	295	phosphoribose diphosphate:decaprenyl-phosphate pho	99.86
KOG4581	359	consensus Predicted membrane protein [Function unk	99.38
KOG1380	409	consensus Heme A farnesyltransferase [Coenzyme tra	99.36
COG1575	303	MenA 1,4-dihydroxy-2-naphthoate octaprenyltransfer	92.26
PRK13591	307	ubiA prenyltransferase; Provisional	90.16
PRK12872	285	ubiA prenyltransferase; Reviewed	89.98
PRK07419	304	1,4-dihydroxy-2-naphthoate octaprenyltransferase;	87.21
PRK13592	299	ubiA prenyltransferase; Provisional	86.99
TIGR01474	281	ubiA_proteo 4-hydroxybenzoate polyprenyl transfera	86.37
PRK13387	317	1,4-dihydroxy-2-naphthoate octaprenyltransferase;	86.15
PLN00012	375	chlorophyll synthetase; Provisional	85.31
PRK13105	282	ubiA prenyltransferase; Reviewed	84.3
PRK12847	285	ubiA 4-hydroxybenzoate polyprenyltransferase; Revi	84.11
PRK12875	282	ubiA prenyltransferase; Reviewed	83.88
PLN02922	315	prenyltransferase	83.77
TIGR01475	282	ubiA_other putative 4-hydroxybenzoate polyprenyltr	83.17
TIGR02235	285	menA_cyano-plnt 1,4-dihydroxy-2-naphthoate phytylt	82.17
PRK13595	292	ubiA prenyltransferase; Provisional	82.13
PRK06080	293	1,4-dihydroxy-2-naphthoate octaprenyltransferase;	81.47
PRK12324	295	phosphoribose diphosphate:decaprenyl-phosphate pho	81.36

>PLN02878 homogentisate phytyltransferase

Probab=100.00  E-value=2.6e-54  Score=412.57  Aligned_cols=268  Identities=49%  Similarity=0.863  Sum_probs=246.3

Q ss_pred             HHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccCCCCCCcccCcCCHHHHHHHHHHHHHHHHH
Q 015791          132 TSIAILPLQSFADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADVEIDKVNKPDLPLASGDLSMGTGLAITLTLSLTSLA  211 (400)
Q Consensus       132 l~g~~lA~~~~~~~~~~~l~~~ll~ll~~~l~~~a~~~iNd~~D~e~D~inkp~RPl~sG~is~~~a~~~~~~l~~lgl~  211 (400)
                      +..+++|.+..+++++.++.+.+.++++.+|++.+..++|||+|+|+||+|||+||+|||++|+++++.+++++.++|++
T Consensus         4 ~~~~l~a~~~~~~~~~~~~~~~l~~~~~~l~~niyivglNd~~D~EIDkINkP~rPIpSG~iS~~~a~~~~~~~~~lg~~   83 (280)
T PLN02878          4 TSVSLLAVESLSDFSPLFFTGLLEALVPALLMNIYIVGLNQLYDIEIDKVNKPYLPLASGEFSVATGVAIVTSFAIMSFG   83 (280)
T ss_pred             hHHhHHHhhccccccHHHHHHHHHHHHHHHhhhhheechhhhhhhcccccCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Confidence            34466777766777777778889999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhchhHHHHHHHHHHHHHhhccCCccccccccCCCcchHHHHHHHHHHHHHHHHHHHHHHhhcCCccchHHHHHHHH
Q 015791          212 IALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQFSFFIHFQKYVLGRPVVITRPLIFAAA  291 (400)
Q Consensus       212 l~~~lg~~~l~~~l~~~~~l~~~Ys~~~pplrlKr~~~~g~l~i~~~~g~~~~~G~~~~~~~~v~g~~~~~~~~l~~~~~  291 (400)
                      +++..|++++.++++.+++++++||.++||+|+||.++++..|+..+++....+|+|.|++++++|++..+++++++.++
T Consensus        84 la~~~g~~~l~~al~~~~~lg~~YS~~lp~lr~k~~~~~aa~~i~~vr~~~v~l~~~~h~~~~~~g~~~~~~~~~~~~~~  163 (280)
T PLN02878         84 MGWIVGSWPLFWALFVSFVLGTAYSINLPLLRWKRSAVAAASCILAVRAVVVQLAFFLHMQTHVLGRPAVFTRPLIFATA  163 (280)
T ss_pred             HHHHHChHHHHHHHHHHHHHHHHHHccCCCcccHHHHHHHHHHHHHHHHHHhhhhHHHhHHHHHhCCccccchhHHHHHH
Confidence            99999998888887778789999998889999999999999988888888888999999999999977666666777777


Q ss_pred             HHHHHHHHHHHHhhcCCchhhHhcCCccchhhhchhhHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHH
Q 015791          292 IISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYGVSVIVGASSSFQLVKLVSIIGHSTLAFLL  371 (400)
Q Consensus       292 ~~~~~~~~~~ii~di~D~egD~~~GirTlpV~lG~k~a~~l~~~l~~~ay~~~~~~g~~~~~~~~~~~~~~g~~~l~~~l  371 (400)
                      ++.++.++++++||++|+||||+.|+||+|+++|+|++.+++..++.++|+..+++|+.++..+...++.+||.+++..+
T Consensus       164 f~~~f~~~i~i~KDi~DieGD~~~Gi~Tlpv~lG~~~~~~i~~~ll~~aY~~~i~~g~~~~~~~~~~~~~~~h~~l~~~L  243 (280)
T PLN02878        164 FMCFFSVVIALFKDIPDVEGDRIFGIRSFSVRLGQKRVFWLCVNLLEMAYAAAILVGASSSFLWSKIITVLGHGILASIL  243 (280)
T ss_pred             HHHHHHHHHHHHhhCcCchhHHHCCCceechhhChHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence            88888999999999999999999999999999999999999999999999988888888888888899999999999999


Q ss_pred             HHHHHHccCCChHHHHHHHHHHHHHhhh
Q 015791          372 WLRAQTVDLSNNASTYSFYMFIWKAIVL  399 (400)
Q Consensus       372 ~~~~~~~d~~~~~~~~~f~~~i~~l~~~  399 (400)
                      |+|.+++|+++++++++||||||||||+
T Consensus       244 ~~rs~~vD~~sk~~i~~fY~fiwklfy~  271 (280)
T PLN02878        244 WQRAQSVDLSSKAAITSFYMFIWKLFYA  271 (280)
T ss_pred             HHHhHhcCcccHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999996

>PRK12887 ubiA tocopherol phytyltransferase; Reviewed

Probab=100.00  E-value=2.4e-51  Score=403.35  Aligned_cols=295  Identities=33%  Similarity=0.554  Sum_probs=247.5

Q ss_pred             chhhhHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHhcccCCC-CChHHHHHHHHHHHHHHHHHHHHhhhhhccccccc
Q 015791          101 STSFWDVLLKKLHALYVFTRPFAMIGTIVGITSIAILPLQSFAD-LTPKYFMEFLKALLSAVLMNNYVGTVNQVADVEID  179 (400)
Q Consensus       101 ~~~~~~~~~~~l~~y~~l~Rp~~~~~~~l~~l~g~~lA~~~~~~-~~~~~l~~~ll~ll~~~l~~~a~~~iNd~~D~e~D  179 (400)
                      |++.+++..+.+++|+|++|||+.+++.++++.+.++|....++ .....+...+.++++..+++.+.+++|||+|+|+|
T Consensus         2 ~~~~~~~~~~~l~~~~~l~Rp~t~igt~l~~~~~~l~a~~~~~~~~~~~~~~~~l~~~~~~~~~nv~i~~iNd~~D~~iD   81 (308)
T PRK12887          2 PKNPLQPMTSWLYALWKFSRPHTIIGTSLSVLGLYLIAIAASSNTIALANLGLLLGAWIACLCGNVYIVGLNQLTDIEID   81 (308)
T ss_pred             CcchhhhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHH
Confidence            56778888999999999999999999999999888876433222 12112233444555555666666669999999999


Q ss_pred             ccCCCCCCcccCcCCHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHhhccCCccccccccCCCcchHHHHHHH
Q 015791          180 KVNKPDLPLASGDLSMGTGLAITLTLSLTSLAIALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVF  259 (400)
Q Consensus       180 ~inkp~RPl~sG~is~~~a~~~~~~l~~lgl~l~~~lg~~~l~~~l~~~~~l~~~Ys~~~pplrlKr~~~~g~l~i~~~~  259 (400)
                      ++|||+||+++|++|+++++.+.+++.++|+.+++..|++.+.+++ ++.+++++||  .||+|+||+|+.++++++..+
T Consensus        82 ~inkp~rPiasG~ls~~~a~~~~~~~~~lal~la~~~~~~~~~~~~-~~~~lg~~Ys--~pP~rlKr~~~~~~~~i~~~~  158 (308)
T PRK12887         82 RINKPHLPLAAGEFSRRQGQRIVIITGILALILAALLGPWLLITVG-ISLLIGTAYS--LPPIRLKRFPLLAALCIFTVR  158 (308)
T ss_pred             hcCCCCCCcCCcccCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHc--CCchhhcccchhHHHHHHHHH
Confidence            9999999999999999999999999999999999999987766654 6888999999  599999999999999998888


Q ss_pred             HHHHHHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHHHHHHhhcCCchhhHhcCCccchhhhchhhHHHHHHHHHHH
Q 015791          260 GLVYQFSFFIHFQKYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFF  339 (400)
Q Consensus       260 g~~~~~G~~~~~~~~v~g~~~~~~~~l~~~~~~~~~~~~~~~ii~di~D~egD~~~GirTlpV~lG~k~a~~l~~~l~~~  339 (400)
                      |.++.+|.+.+.+.. .++....+...++..+++.+++++++++||++|+|||++.|+||+|+++|++++.+++..++.+
T Consensus       159 g~i~~~g~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~l~~di~D~egD~~~Gi~Tlav~lG~~~a~~l~~~ll~~  237 (308)
T PRK12887        159 GVIVNLGLFLHFQWL-LGGSVLIPPTVWLLTLFVLVFTFAIAIFKDIPDMEGDRQYQITTFTLRLGKQAVFKLSCWVLTA  237 (308)
T ss_pred             HHHHHHHHHHHHHHH-HhccccCcHHHHHHHHHHHHHHHHHHHHHhccchhhHHHcCCcchhHHHhHHHHHHHHHHHHHH
Confidence            888888877654432 2333334455566677888889999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHhhh
Q 015791          340 AYGVSVIVGASSSFQLVKLVSIIGHSTLAFLLWLRAQTVDLSNNASTYSFYMFIWKAIVL  399 (400)
Q Consensus       340 ay~~~~~~g~~~~~~~~~~~~~~g~~~l~~~l~~~~~~~d~~~~~~~~~f~~~i~~l~~~  399 (400)
                      +|+..++.++....++....+.++|++++..+++|.+++|+++++++++|||||||+||+
T Consensus       238 ~y~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~iw~l~~~  297 (308)
T PRK12887        238 CYLGMIAVGLLSLPTVNPAFLIVSHLILLALLWWRSQRVDLQDKQAIAQFYQFIWKLFFL  297 (308)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHH
Confidence            999988877777666666667799999999999999999999999999999999999996

>PRK12895 ubiA prenyltransferase; Reviewed

Probab=100.00  E-value=1.3e-35  Score=288.45  Aligned_cols=259  Identities=17%  Similarity=0.154  Sum_probs=203.7

Q ss_pred             HHHHHHhhhccchHHHHHHHHHHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccCC--CCCCc
Q 015791          111 KLHALYVFTRPFAMIGTIVGITSIAILPLQSFADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADVEIDKVNK--PDLPL  188 (400)
Q Consensus       111 ~l~~y~~l~Rp~~~~~~~l~~l~g~~lA~~~~~~~~~~~l~~~ll~ll~~~l~~~a~~~iNd~~D~e~D~ink--p~RPl  188 (400)
                      ++++|+|++||++....+..++.|.++|.+..+  ++.   .+++.+++.+++++++|++||+.|+|+|++|+  ++||+
T Consensus         2 ~~~~~~el~k~~~t~~al~~a~~g~~lA~~~~~--~~~---~l~l~~~~~~~~rsag~~~Ndi~Dr~iD~~~~RT~~RPL   76 (286)
T PRK12895          2 NFRDIVDYIKLEHTVFDLPFILAGYVIAAGHYI--HPI---KILLILIAAVSARTSAMSINRIEGLRYDMINPRKKDWAL   76 (286)
T ss_pred             cHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCCC--CHH---HHHHHHHHHHHHHHHHHHHHhHHHhcccCCCCcCCCCCC
Confidence            478999999999999999999999999854322  222   13456678899999999999999999999995  59999


Q ss_pred             ccCcCCHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHhhccCCccccccccCCCcchHHHHHHHHHHHHHHHH
Q 015791          189 ASGDLSMGTGLAITLTLSLTSLAIALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQFSFF  268 (400)
Q Consensus       189 ~sG~is~~~a~~~~~~l~~lgl~l~~~lg~~~l~~~l~~~~~l~~~Ys~~~pplrlKr~~~~g~l~i~~~~g~~~~~G~~  268 (400)
                      |+|++|+++|+.+.+++.++++.+++.+|+.++.++. ..+.+...|+.      +||++.++|+.++...|..+.+|+.
T Consensus        77 psG~is~~~A~~~~~~~~~~~~~~~~~ln~l~~~l~~-~~~~l~~~yp~------~KR~t~~~~~~lG~~~g~~~l~g~~  149 (286)
T PRK12895         77 VSGRIKMREAIAFTIIFIAIFEICTFLLNRLVFILSP-IVIFLFIIDPF------LKRYTAWRHIYMGSIIGLGVLAGYL  149 (286)
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHHH------HHhCccccHHHHHHHHHhHHHHHHH
Confidence            9999999999999999999999999999998877665 45556666764      8999999999888888865555543


Q ss_pred             HHHHHHhhcCCccchHHHHHHHHHHHHHHHHHHHHhhcCCchhhHhcCCccchhhhchhhHHHHHHHHHHHHHHHHHHHH
Q 015791          269 IHFQKYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYGVSVIVG  348 (400)
Q Consensus       269 ~~~~~~v~g~~~~~~~~l~~~~~~~~~~~~~~~ii~di~D~egD~~~GirTlpV~lG~k~a~~l~~~l~~~ay~~~~~~g  348 (400)
                      +     + ++...+....+++.+...+|+.++|++|+++|+|+|++.|+||+|+++|++++.++...+..++.....+.+
T Consensus       150 A-----v-~g~~~~~~~~~~l~~~~~~W~~g~D~iYa~qD~e~D~~~Gv~S~a~~fG~~~~~~i~~~~~~~~~~~~~~~g  223 (286)
T PRK12895        150 A-----V-IPAFPYNLLIYIIFISSSLWIAGFDIIYVIPDIEYDKINGLKTIMNTYGIKNGLYISDIFHISSLILFWISG  223 (286)
T ss_pred             H-----H-cCCCCchHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHcCCCchHHHHCCccHHHHHHHHHHHHHHHHHHHH
Confidence            2     1 222222222334455667789999999999999999999999999999999988776666666655555555


Q ss_pred             HhhhhhhHHHHHHHHHHHHHHHHHHHHHHccCCChHHH-HHHHH
Q 015791          349 ASSSFQLVKLVSIIGHSTLAFLLWLRAQTVDLSNNAST-YSFYM  391 (400)
Q Consensus       349 ~~~~~~~~~~~~~~g~~~l~~~l~~~~~~~d~~~~~~~-~~f~~  391 (400)
                      ....    ...+.++.++.+..+.+|++.+|.+|+++| .+||.
T Consensus       224 ~~~~----~~~y~~~~~~~~~~l~~q~~~~~~~~~~~~~~~~F~  263 (286)
T PRK12895        224 IYIR----TLWYLAALIIIYTLVIYQHLIIDPRNPINKRMSFFN  263 (286)
T ss_pred             HHHh----hHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHH
Confidence            4433    245567777888889999999999999999 66664

>PRK13106 ubiA prenyltransferase; Reviewed

Probab=100.00  E-value=2e-35  Score=289.15  Aligned_cols=269  Identities=16%  Similarity=0.149  Sum_probs=206.1

Q ss_pred             CcCchhhhHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhccccc
Q 015791           98 DINSTSFWDVLLKKLHALYVFTRPFAMIGTIVGITSIAILPLQSFADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADVE  177 (400)
Q Consensus        98 ~~~~~~~~~~~~~~l~~y~~l~Rp~~~~~~~l~~l~g~~lA~~~~~~~~~~~l~~~ll~ll~~~l~~~a~~~iNd~~D~e  177 (400)
                      ++||+ .++..+.++++|+|++||++.++...+.+.|.++|.+..+  ++..   +++.+++.+++++++|++||++|+|
T Consensus         2 ~~~~~-~~~~~~~~l~~yl~L~R~~~~~~~l~~~~~g~~la~~~~~--~~~~---l~l~~lg~~l~~~a~~~~Nd~~D~d   75 (300)
T PRK13106          2 SWDPG-GLNNTRSKFYIILRFLRIEQTFFSLPMAYLGAFVAIKGIP--PIST---LILIFLALFFLRTAGMTNDNLADLE   75 (300)
T ss_pred             CCCcc-cchhhHHHHHHHHHHHccccHHHHHHHHHHHHHHHcCCCC--CHHH---HHHHHHHHHHHHHHHHHHHhhHHhc
Confidence            36773 4455788999999999999999999989999999865432  3322   4567789999999999999999999


Q ss_pred             ccccCC--CCCCcccCcCCHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHhhccCCccccccccCCCcchHHH
Q 015791          178 IDKVNK--PDLPLASGDLSMGTGLAITLTLSLTSLAIALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCM  255 (400)
Q Consensus       178 ~D~ink--p~RPl~sG~is~~~a~~~~~~l~~lgl~l~~~lg~~~l~~~l~~~~~l~~~Ys~~~pplrlKr~~~~g~l~i  255 (400)
                      +|++|+  ++||+++|++|+++|+.+.+++.+.++.++..+|+.+..++. +++++...|+.      +||++.++|+.+
T Consensus        76 iD~~~~RT~~RPl~sG~is~~~A~~~~~~~~~~~~~~~~~ln~~~~~l~~-~~~~~~~~Y~~------~KR~t~~~~~~l  148 (300)
T PRK13106         76 IDAKNPRTKNRPLVTGAIKISEAKALITAGLILFFASAYLVNRWALLLSP-IVALIAMSYPY------MKRYTAFANYHL  148 (300)
T ss_pred             cccCCCccCCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHhH------HhcCCcchHHHH
Confidence            999985  699999999999999999877777777777888988777665 45556778985      799999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhcCCc-----cchHHHHHHHHHHHHHHHHHHHHhhcCCchhhHhcCCccchhhhchhhHH
Q 015791          256 VTVFGLVYQFSFFIHFQKYVLGRPV-----VITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVL  330 (400)
Q Consensus       256 ~~~~g~~~~~G~~~~~~~~v~g~~~-----~~~~~l~~~~~~~~~~~~~~~ii~di~D~egD~~~GirTlpV~lG~k~a~  330 (400)
                      +..++..+..|....     .|...     ..+...++..+...+|+.++|++|+++|+|+|++.|+||+|+++| +++.
T Consensus       149 g~~~~~~~~~G~~a~-----~g~~~~~~~~~l~~~~~~l~~~~~lw~~~~d~iya~~D~e~D~~~Gi~Slpv~~G-~~a~  222 (300)
T PRK13106        149 ASIQGLAVFSGAVAV-----LGLYANSLIQVLLRVPWLFVIGTILWAAGFDLYNHIPDAEFDREMGLHSFAVVLG-KWAL  222 (300)
T ss_pred             HHHHHHHHHHHHHHH-----cCCcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHccchhhHHHCCCCccHHHHh-hhHH
Confidence            888887666665332     23211     011122333445567889999999999999999999999999999 8888


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHccCCChHHHHHHH
Q 015791          331 RLCVYALFFAYGVSVIVGASSSFQLVKLVSIIGHSTLAFLLWLRAQTVDLSNNASTYSFY  390 (400)
Q Consensus       331 ~l~~~l~~~ay~~~~~~g~~~~~~~~~~~~~~g~~~l~~~l~~~~~~~d~~~~~~~~~f~  390 (400)
                      +++..+..++.++..+.+....+++   .+.++..+....+.+++..++.+  +.|...|
T Consensus       223 ~~~~~~~~~~v~l~~~~~~~~~lg~---~y~~~~~~~~~~l~~~~~~~~~~--~~~~~~F  277 (300)
T PRK13106        223 TFAGLNQLFSVVLDLLGDLYYGLGP---IAIAATILHGLIMAYAYYLASKK--GDFGRAF  277 (300)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCcH---HHHHHHHHHHHHHHHHHHHhCCc--hHHHHHH
Confidence            8877777776666666666555554   34455666677888899988877  5565443

>TIGR01475 ubiA_other putative 4-hydroxybenzoate polyprenyltransferase

Probab=100.00  E-value=1.3e-34  Score=282.01  Aligned_cols=263  Identities=17%  Similarity=0.200  Sum_probs=202.6

Q ss_pred             HHHHHHhhhccchHHHHHHHHHHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccC--CCCCCc
Q 015791          111 KLHALYVFTRPFAMIGTIVGITSIAILPLQSFADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADVEIDKVN--KPDLPL  188 (400)
Q Consensus       111 ~l~~y~~l~Rp~~~~~~~l~~l~g~~lA~~~~~~~~~~~l~~~ll~ll~~~l~~~a~~~iNd~~D~e~D~in--kp~RPl  188 (400)
                      ++++|++++||++.....+.++.|.++|.+..+  ++.   .+++++++.+++++++|++||++|+|+|++|  +|+||+
T Consensus         1 ~~~~~~~L~r~~~~~~~~~~~~~g~~la~~~~~--~~~---~~~l~~l~~~l~~~a~~~~Nd~~D~~~D~~~~Rt~~RPl   75 (282)
T TIGR01475         1 KFKDILELIKFEHTVFALPFAYAGALLAAKGLP--GLK---TLILILIAAVSARTAAMAFNRIIDRAIDARNPRTKNRPL   75 (282)
T ss_pred             CHHHHHHHHccccHHHHHHHHHHHHHHhcCCCC--CHH---HHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccCCCCC
Confidence            368999999999999998888889998855432  332   2456788999999999999999999999998  579999


Q ss_pred             ccCcCCHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHhhccCCccccccccCCCcchHHHHHHHHHHHHHHHH
Q 015791          189 ASGDLSMGTGLAITLTLSLTSLAIALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQFSFF  268 (400)
Q Consensus       189 ~sG~is~~~a~~~~~~l~~lgl~l~~~lg~~~l~~~l~~~~~l~~~Ys~~~pplrlKr~~~~g~l~i~~~~g~~~~~G~~  268 (400)
                      ++|++|+++++.+++++.++++.+++.+|+.+..++. .+.++.+.|+.      +||++.+++++.+...+..+.+|+.
T Consensus        76 ~sG~is~~~a~~~~~~~~~~~~~~~~~l~~~~~~l~~-~~~~~~~~Y~~------~Kr~~~~~~~~~g~~~~~~~~~g~~  148 (282)
T TIGR01475        76 VSGLISKKEARTMIILSLALFLSASYFLNPLAFILSP-LVLLVLIIYPY------TKRFTFLCHYVLGSTYGLAPLAGWV  148 (282)
T ss_pred             CCCCcCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHhh------HhccccccHHHHHHHHHHHHHHHHH
Confidence            9999999999999998888888888888887776654 45666889985      7999999999887776665555543


Q ss_pred             HHHHHHhhcCCccchHHHHHHHHHHHHHHHHHHHHhhcCCchhhHhcCCccchhhhchhhHHHHHHHHHHHHHHHHHHHH
Q 015791          269 IHFQKYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYGVSVIVG  348 (400)
Q Consensus       269 ~~~~~~v~g~~~~~~~~l~~~~~~~~~~~~~~~ii~di~D~egD~~~GirTlpV~lG~k~a~~l~~~l~~~ay~~~~~~g  348 (400)
                      +.     .|. .......++..+...+|+.+.+++||++|+|+|+++|+||+|+++|+|++.++...+..++++..++.+
T Consensus       149 a~-----~g~-~~~~~~~~ll~~~~~~w~~~~~~i~~~~D~e~D~~~G~~tlpv~~G~~~a~~~~~~~~~~~~~~~~~~~  222 (282)
T TIGR01475       149 AV-----IGT-ISFFLVAWLLGIGVGFWIAGFDLIYAIQDYEFDRKNGLHSIPARFGIKAALKIASLSHVITFILLLLVG  222 (282)
T ss_pred             HH-----hCC-ccchHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHcCCCchHHHhchHHHHHHHHHHHHHHHHHHHHHH
Confidence            31     122 221122333455566778899999999999999999999999999999998887777777776666666


Q ss_pred             HhhhhhhHHHHHHHHHHHHHHHHHHHHHHccCCChHHHHH-HHHHHH
Q 015791          349 ASSSFQLVKLVSIIGHSTLAFLLWLRAQTVDLSNNASTYS-FYMFIW  394 (400)
Q Consensus       349 ~~~~~~~~~~~~~~g~~~l~~~l~~~~~~~d~~~~~~~~~-f~~~i~  394 (400)
                      .....++   .+.++..+....++++.+.+|.+|+++|++ ||....
T Consensus       223 ~~~~~g~---~y~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ff~~~~  266 (282)
T TIGR01475       223 FYVGNGY---IALLALILIGLILAYEHYIVDPGDQSKIQRAFFYANG  266 (282)
T ss_pred             HHhhCcH---HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhH
Confidence            5555443   344455555677888888899999888876 555533

A fairly deep split separates this polyprenyltransferase subfamily from the set of mitochondrial and proteobacterial 4-hydroxybenzoate polyprenyltransferases, described in TIGR01474. Protoheme IX farnesyltransferase (heme O synthase) (TIGR01473) is more distantly related. Because no species appears to have both this protein and a member of TIGR01474, it is likely that This model represents 4-hydroxybenzoate polyprenyltransferase, a critical enzyme of ubiquinone biosynthesis, in the Archaea, Gram-positive bacteria, Aquifex aeolicus, the Chlamydias, etc.

>PRK12874 ubiA prenyltransferase; Reviewed

Probab=100.00  E-value=6.8e-34  Score=277.75  Aligned_cols=270  Identities=19%  Similarity=0.171  Sum_probs=205.3

Q ss_pred             HHHHHHHHHHHhhhccchHHHHHHHHHHHHHHhccc---CCCCChHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccC
Q 015791          106 DVLLKKLHALYVFTRPFAMIGTIVGITSIAILPLQS---FADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADVEIDKVN  182 (400)
Q Consensus       106 ~~~~~~l~~y~~l~Rp~~~~~~~l~~l~g~~lA~~~---~~~~~~~~l~~~ll~ll~~~l~~~a~~~iNd~~D~e~D~in  182 (400)
                      ++.++++++|+|++||++.+.++..++.|.++|...   ...+++.   .+++++++.+++++++|++|||+|+|+|++|
T Consensus         2 ~~~~~~l~~y~~l~r~~~~~~~l~~a~~g~~la~~~~~~~~~~~~~---~~~l~~l~~~l~~~a~~~~Nd~~DrdiD~~~   78 (291)
T PRK12874          2 KKFTKKLKDISELVVFKHSIFSLPFIFIAMIVASKQKNDTGWFGFK---LLILGILAAVSARNFAMAFNRLVDRDIDKDN   78 (291)
T ss_pred             chHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhhhccCCCCCHH---HHHHHHHHHHHHHHHHHHHHhhhhhccccCC
Confidence            357789999999999999999999999998887521   1123433   2467788999999999999999999999999


Q ss_pred             C--CCCCcccCcCCHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHhhccCCccccccccCCCcchHHHHHHHH
Q 015791          183 K--PDLPLASGDLSMGTGLAITLTLSLTSLAIALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFG  260 (400)
Q Consensus       183 k--p~RPl~sG~is~~~a~~~~~~l~~lgl~l~~~lg~~~l~~~l~~~~~l~~~Ys~~~pplrlKr~~~~g~l~i~~~~g  260 (400)
                      +  |+||+++|++|+++++.+++++.++++.+++.+|+.+..+++ ..+++...||.      +||++.++++..+...+
T Consensus        79 ~RT~~RPl~sG~is~~~a~~~~~~~~~~~~~~~~~~n~~~~~l~~-~~~~~~~~Y~~------~KR~t~~~~~~~g~~~~  151 (291)
T PRK12874         79 PRTANRPSVDGRISVKSMVLFIVLNALIFIGVSYFINPLAFKLSF-PFLIVLGGYSY------FKRFSSLAHLVLGLSLG  151 (291)
T ss_pred             CCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHhh------hcccccccHHHHHHHHH
Confidence            7  599999999999999999999988888888888988777664 46667889995      89999999998887777


Q ss_pred             HHHHHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHHHHHHhhcCCchhhHhcCCccchhhhchhhHHHHHHHHHHHH
Q 015791          261 LVYQFSFFIHFQKYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFA  340 (400)
Q Consensus       261 ~~~~~G~~~~~~~~v~g~~~~~~~~l~~~~~~~~~~~~~~~ii~di~D~egD~~~GirTlpV~lG~k~a~~l~~~l~~~a  340 (400)
                      ..+.+|+..     + ++...  .+.+++.+.+.+|+.+.+++++++|+|+|+++|+||+|+++|++++.++......+.
T Consensus       152 ~~~l~G~~a-----v-~g~~~--~~~~~l~~~~~~w~~~~~~~~a~~D~~~D~~~Gi~slpv~~G~~~~~~~~~~~~~~~  223 (291)
T PRK12874        152 LAPIAGVVA-----V-LGEIP--LWSVFLALGVMFWVAGFDLLYSLQDMEFDKKRGLHSIPSKFGEKATLFISRLFHLLA  223 (291)
T ss_pred             HHHHHHHHH-----H-cCCCc--HHHHHHHHHHHHHHHHHHHHHHhccHHHHHHcCCCcccHHhhhHhHHHHHHHHHHHH
Confidence            666666533     2 22222  223344555677899999999999999999999999999999999887655555444


Q ss_pred             HHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHccCCChHHHHHHHHHHHHH
Q 015791          341 YGVSVIVGASSSFQLVKLVSIIGHSTLAFLLWLRAQTVDLSNNASTYSFYMFIWKA  396 (400)
Q Consensus       341 y~~~~~~g~~~~~~~~~~~~~~g~~~l~~~l~~~~~~~d~~~~~~~~~f~~~i~~l  396 (400)
                      .+.....+......+   .+.++..+.+.+++++.+.++.++++.|+.||.....+
T Consensus       224 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ff~sn~~l  276 (291)
T PRK12874        224 VLFWLLFVWCAHLGL---FAYLGVIVSALILLYEHYLVRKDFKKIDKAFFTLNGYL  276 (291)
T ss_pred             HHHHHHHHHHhcchH---HHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHH
Confidence            444444343333332   23345556666777888888777777888887765544

>PRK12870 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed

Probab=100.00  E-value=3e-34  Score=280.26  Aligned_cols=261  Identities=16%  Similarity=0.143  Sum_probs=198.4

Q ss_pred             HHHHHHHHHhhhccchHHHHH---HHHHHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccCC-
Q 015791          108 LLKKLHALYVFTRPFAMIGTI---VGITSIAILPLQSFADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADVEIDKVNK-  183 (400)
Q Consensus       108 ~~~~l~~y~~l~Rp~~~~~~~---l~~l~g~~lA~~~~~~~~~~~l~~~ll~ll~~~l~~~a~~~iNd~~D~e~D~ink-  183 (400)
                      +++++++|++++||+++.++.   ++++.|.++|.+..+  ++..   +++++++.+++++++|++||++|+|+|+.++ 
T Consensus         5 ~~~~~~~y~~L~R~~kp~~~~l~~~~~~~g~~lA~~~~~--~~~~---~~l~~lg~~~~~~a~~~~Nd~~D~~iD~~~~R   79 (290)
T PRK12870          5 LEPTWLAIIRLLRWDKPAGRLILMIPALWAVFLAAHGLP--PLPL---VGIIILGALATSAAGCVVNDLWDRDIDPQVER   79 (290)
T ss_pred             cchhHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHccCCC--CHHH---HHHHHHHHHHHHHHHHHHHhHHHhccCCCCCc
Confidence            457889999999999987766   467888888854332  3321   4567789999999999999999999998654 


Q ss_pred             C-CCCcccCcCCHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHhhccCCccccccccCCCcchHHHHHHHHHH
Q 015791          184 P-DLPLASGDLSMGTGLAITLTLSLTSLAIALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLV  262 (400)
Q Consensus       184 p-~RPl~sG~is~~~a~~~~~~l~~lgl~l~~~lg~~~l~~~l~~~~~l~~~Ys~~~pplrlKr~~~~g~l~i~~~~g~~  262 (400)
                      + +||+++|++|+++|..+++++.++++.+++.+|+.++.+++ .+.++.++||.      .||++.++++..+..++..
T Consensus        80 t~~RPL~sG~is~~~a~~~~~~~~~~~~~l~~~l~~~~~~l~~-~~~~~~~~Y~~------~KR~t~~~~~~lg~~~~~~  152 (290)
T PRK12870         80 TRFRPLASRRLSVKVGIVIAIVALLCAAGLAFFLNPLSFWLCV-AAVPVIFLYPL------AKRVFPVPQLVLAIAWGFA  152 (290)
T ss_pred             ccCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHhhh------hhhccccceeeehHHHHhH
Confidence            4 89999999999999999999999999999989988877765 46667899985      7999988998877777765


Q ss_pred             HHHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHHHHHHhhcCCchhhHhcCCccchhhhchhhHHHHHHHHHHHHHH
Q 015791          263 YQFSFFIHFQKYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYG  342 (400)
Q Consensus       263 ~~~G~~~~~~~~v~g~~~~~~~~l~~~~~~~~~~~~~~~ii~di~D~egD~~~GirTlpV~lG~k~a~~l~~~l~~~ay~  342 (400)
                      +..|+..     +.|. .  +...+++.+.+.+|+.+++++++++|+|+|+++|+||+|+++|++++.++... ..+...
T Consensus       153 ~l~g~~a-----~~g~-~--~~~~~~l~~~~~lw~~~~d~~~a~~D~e~D~~~G~~slav~~G~~~~~~~~~~-~~~~~~  223 (290)
T PRK12870        153 VLISWSA-----VTGH-L--DLGTWLLWAATVFWTLGFDTVYAMSDREDDLRIGVNSSAIFFGRYAPEAIGLF-FALTVG  223 (290)
T ss_pred             HHHHHHH-----HcCC-C--CHHHHHHHHHHHHHHHHHHHHHHhhhHhhHHHCCCcchhHHhccccHHHHHHH-HHHHHH
Confidence            5555432     1232 2  22334445566778999999999999999999999999999999988876653 333333


Q ss_pred             HHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHc--cCCChHHHHHHHHH
Q 015791          343 VSVIVGASSSFQLVKLVSIIGHSTLAFLLWLRAQTV--DLSNNASTYSFYMF  392 (400)
Q Consensus       343 ~~~~~g~~~~~~~~~~~~~~g~~~l~~~l~~~~~~~--d~~~~~~~~~f~~~  392 (400)
                      .....+...+.++.   +.++..+.+..+.+++..+  |.++++.|.+||+.
T Consensus       224 ~l~~~~~~~~~~~~---y~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~F~~  272 (290)
T PRK12870        224 FLAILGVLLELHLP---FWIGLAIAAVLWARQYRRLRQANLPPLAYGQLFLQ  272 (290)
T ss_pred             HHHHHHHHhCCcHH---HHHHHHHHHHHHHHHHHHhcccCCChHHHHHHHHH
Confidence            33444555444433   3345556667788888888  77788889887765

>PRK12882 ubiA prenyltransferase; Reviewed

Probab=100.00  E-value=5.9e-34  Score=276.48  Aligned_cols=260  Identities=21%  Similarity=0.246  Sum_probs=190.3

Q ss_pred             HHHHHHhhhccchHHHHHHHHHHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccCCCCCCccc
Q 015791          111 KLHALYVFTRPFAMIGTIVGITSIAILPLQSFADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADVEIDKVNKPDLPLAS  190 (400)
Q Consensus       111 ~l~~y~~l~Rp~~~~~~~l~~l~g~~lA~~~~~~~~~~~l~~~ll~ll~~~l~~~a~~~iNd~~D~e~D~inkp~RPl~s  190 (400)
                      ++++|++++||++...++++.+.|.++|.+..++  ..   ..++++++.+++++++|++||++|+|+|++|+|+||+++
T Consensus         3 ~~~~~~~l~Rp~~~~~~~~~~~~g~~~a~~~~~~--~~---~~~l~~l~~~l~~~~~~~~Nd~~D~~iD~~~~~~Rpl~~   77 (276)
T PRK12882          3 TVRGYLELTRPVNAVVAGVAAFIGAFIAGGILSS--PS---LTGLAFAAVFLATGAGNAINDYFDREIDRINRPDRPIPS   77 (276)
T ss_pred             CHHHHHHHHhhhHHHHHHHHHHHHHHHhccccch--HH---HHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCCCcCC
Confidence            3789999999999999999999999998543211  11   145678899999999999999999999999999999999


Q ss_pred             CcCCHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHhhccCCccccccccCCCcchHHHHHHHHHHHHHHHHHH
Q 015791          191 GDLSMGTGLAITLTLSLTSLAIALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQFSFFIH  270 (400)
Q Consensus       191 G~is~~~a~~~~~~l~~lgl~l~~~lg~~~l~~~l~~~~~l~~~Ys~~~pplrlKr~~~~g~l~i~~~~g~~~~~G~~~~  270 (400)
                      |++|+++++.++.++.++|+.+++.+|+..+.+++ ++.++.++|+.     |+||++.++|+.++...|..+.+|... 
T Consensus        78 G~is~~~a~~~~~~l~~~g~~~~~~l~~~~~~~~~-~~~~~~~~Yt~-----~lK~~~~~g~~~vg~~~g~~~~~g~~~-  150 (276)
T PRK12882         78 GAVSPRGALAFSILLFAAGVALAFLLPPLCLAIAL-FNSLLLVLYAE-----TLKGTPGLGNASVAYLTGSTFLFGGAA-  150 (276)
T ss_pred             CCcCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHHH-----HHhcccchhHHHHHHHHHHHHHHHHHH-
Confidence            99999999999999999999999989987777664 46667889985     589999889998877666554444321 


Q ss_pred             HHHHhhcCCccchHHHHHHHHHHHHHHHHHHHHhhcCCchhhHhcCCccchhhhchhhHHHHHHHHHHHHHHHHHHHHHh
Q 015791          271 FQKYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYGVSVIVGAS  350 (400)
Q Consensus       271 ~~~~v~g~~~~~~~~l~~~~~~~~~~~~~~~ii~di~D~egD~~~GirTlpV~lG~k~a~~l~~~l~~~ay~~~~~~g~~  350 (400)
                           .+...  ....+...+..+++..+++++||++|+|+|+++|+||+|+++|+|++.++.........+...+.-..
T Consensus       151 -----~~~~~--~~~~~~l~~~~fl~~~~~~~~~~~~D~e~D~~~G~~tlpv~~G~~~t~~~~~~~~~~~~~~~~~~~~~  223 (276)
T PRK12882        151 -----VGTEG--LLALLVLFALAALATLAREIIKDVEDIEGDRAEGARTLPILIGVRKALYVAAAFLLVAVAASPLPYLL  223 (276)
T ss_pred             -----hcccc--hHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHcCCccccHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                 23211  11122233344455778999999999999999999999999999999887666554444333221112


Q ss_pred             hhhhhHHHHHHHHHHH-HHHHHHHHHHHccCCChHHHHHHHHH
Q 015791          351 SSFQLVKLVSIIGHST-LAFLLWLRAQTVDLSNNASTYSFYMF  392 (400)
Q Consensus       351 ~~~~~~~~~~~~g~~~-l~~~l~~~~~~~d~~~~~~~~~f~~~  392 (400)
                      ...++   .+.+...+ .+.++....+..|.+|++.|.++|++
T Consensus       224 ~~~~~---~y~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~  263 (276)
T PRK12882        224 STFGL---WYLVLVAPADLVMLAAAYRSLKKTDPTASQKLLKY  263 (276)
T ss_pred             HHhhH---HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence            22232   22222222 23344456677788888888765544

>TIGR01476 chlor_syn_BchG bacteriochlorophyll/chlorophyll synthetase

Probab=100.00  E-value=6.8e-34  Score=276.97  Aligned_cols=221  Identities=20%  Similarity=0.242  Sum_probs=173.2

Q ss_pred             HHHHhhhccchHHHHHHHHHHHHHHhcccCCC-CChHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccCCCCCCcccC
Q 015791          113 HALYVFTRPFAMIGTIVGITSIAILPLQSFAD-LTPKYFMEFLKALLSAVLMNNYVGTVNQVADVEIDKVNKPDLPLASG  191 (400)
Q Consensus       113 ~~y~~l~Rp~~~~~~~l~~l~g~~lA~~~~~~-~~~~~l~~~ll~ll~~~l~~~a~~~iNd~~D~e~D~inkp~RPl~sG  191 (400)
                      ++|++++||+++..++.+++.|.+++...... +++..  .++.++++..++++++|++|||+|+|+|++|+|+||+++|
T Consensus         1 ~~~~~l~rp~t~~~~~~~~~~G~~~a~~~~~~~~~~~~--~ll~~~~~~~l~~~~~n~~Nd~~D~~~D~~~~~~Rpi~~G   78 (283)
T TIGR01476         1 RAHIELMKPVTWIPPIWACFCGALASGYERGFPEHWWL--MLLGMLMAGPLGTGFSQSINDYFDRDVDAINEPQRPIPSG   78 (283)
T ss_pred             CceeEecCCceehhHHHHHHHHHHhccCCCCcchhHHH--HHHHHHHHHHHHHHHHHHHHhHhhhCcccCCCCCCCCCCC
Confidence            36899999999999999999999888422222 33321  1344677999999999999999999999999999999999


Q ss_pred             cCCHHHHHHHHHHHHHHHHHHHHHhchhH-HHHHHHHHHHHHhhccCCccccccccCCCcchHHHHHHHHHHHHHHHHHH
Q 015791          192 DLSMGTGLAITLTLSLTSLAIALSLQSPP-LIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQFSFFIH  270 (400)
Q Consensus       192 ~is~~~a~~~~~~l~~lgl~l~~~lg~~~-l~~~l~~~~~l~~~Ys~~~pplrlKr~~~~g~l~i~~~~g~~~~~G~~~~  270 (400)
                      ++|+++++.+..++.++++++++.++.+. ..++ +++++.+++||  .||+|+||+++++++.++..++.....+.+. 
T Consensus        79 ~is~~~a~~~~~~~~~~~~~l~~~l~~~~~~~l~-~~~~~~~~~Ys--~~p~~lk~~~~~g~~~vg~~~~~~~~~~~~~-  154 (283)
T TIGR01476        79 IISLREVRWNWLVLTVAGLLVALVLGNWLIVLFT-VVGIVLAVIYS--MPPIKLKRNGWLGPPAVGLSYEGLPWMAGHA-  154 (283)
T ss_pred             CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhheec--CchhhhccCCCccHHHHHHHHHHHHHHHHHH-
Confidence            99999999999999999999988887666 4444 35777899999  4899999999889998776555433222221 


Q ss_pred             HHHHhhcCCccchHHHHHHHHHHHHHHHHHHHHhhcCCchhhHhcCCccchhhhchhhHHHHHHHHHHHHHHHHHH
Q 015791          271 FQKYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYGVSVI  346 (400)
Q Consensus       271 ~~~~v~g~~~~~~~~l~~~~~~~~~~~~~~~ii~di~D~egD~~~GirTlpV~lG~k~a~~l~~~l~~~ay~~~~~  346 (400)
                          +.+ ..  +...++..+..++++.+++++||++|+|+|+++|+||+|+++|+|++.+++..++.++|+..+.
T Consensus       155 ----~~~-~~--~~~~~~~~~~~~l~~~~i~~~nd~~D~~~D~~~G~~Tl~v~lG~~~a~~l~~~l~~~~~~~~~~  223 (283)
T TIGR01476       155 ----IFA-PL--TWQSVVVALIYSLGAHGIMTLNDFKSVEGDRQLGLRSLPVMIGVKRAAIVAVTTINVFQAMVIG  223 (283)
T ss_pred             ----HhC-CC--CHHHHHHHHHHHHHHHHHHHHHhccchhhHHHcCCcCcceEEcHHHHHHHHHHHHHHHHHHHHH
Confidence                122 22  2233344455566788889999999999999999999999999999999888877777765544

This model describes a subfamily of a large family of polyprenyltransferases (pfam01040) that also includes 4-hydroxybenzoate octaprenyltransferase and protoheme IX farnesyltransferase (heme O synthase). Members of this family are found exclusively in photosynthetic organisms, including a single copy in Arabidopsis thaliana.

>PLN02809 4-hydroxybenzoate nonaprenyltransferase

Probab=100.00  E-value=1.5e-33  Score=274.87  Aligned_cols=262  Identities=22%  Similarity=0.143  Sum_probs=197.8

Q ss_pred             HHHHHHHHhhhccchHHHHHHHH---HHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccCC--
Q 015791          109 LKKLHALYVFTRPFAMIGTIVGI---TSIAILPLQSFADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADVEIDKVNK--  183 (400)
Q Consensus       109 ~~~l~~y~~l~Rp~~~~~~~l~~---l~g~~lA~~~~~~~~~~~l~~~ll~ll~~~l~~~a~~~iNd~~D~e~D~ink--  183 (400)
                      ++++++|+|++|.+++.++.+..   ..|.+++....+..++..   +++.+++.+++++++|++||++|+|+|++|+  
T Consensus         3 ~~~~~~y~~L~Rl~kp~~~~l~~~p~~~~~~l~a~~~~~~~~~~---l~l~~~g~~~~~~a~~~~Nd~~Dr~iD~~~~RT   79 (289)
T PLN02809          3 PPSLRPYAKLARLDKPIGTWLLAWPCMWSIALAAPPGSLPDLKM---LALFGCGALLLRGAGCTINDLLDRDIDKKVERT   79 (289)
T ss_pred             chhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhccCCCCcHHH---HHHHHHHHHHHHHHHHHHHhhHHhccccCCCCC
Confidence            46889999999999988776544   445555532111122321   4567789999999999999999999999875  


Q ss_pred             CCCCcccCcCCHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHhhccCCccccccccCCCcchHHHHHHHHHHH
Q 015791          184 PDLPLASGDLSMGTGLAITLTLSLTSLAIALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVY  263 (400)
Q Consensus       184 p~RPl~sG~is~~~a~~~~~~l~~lgl~l~~~lg~~~l~~~l~~~~~l~~~Ys~~~pplrlKr~~~~g~l~i~~~~g~~~  263 (400)
                      |+||+++|++|+++|+.+..++.++++.+.+.+|+.++.+++ +++++.+.||.      +||++.++++..+...+..+
T Consensus        80 ~~RPL~sG~is~~~A~~~~~~~~~~~~~~~~~l~~~~~~l~~-~~~~~~~~Y~~------~KR~t~~~~~~lg~~~~~~~  152 (289)
T PLN02809         80 KLRPIASGALTPFQGVGFLGAQLLLGLGILLQLNNYSRILGA-SSLLLVFTYPL------MKRFTFWPQAFLGLTFNWGA  152 (289)
T ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHhH------HHhcCcchHHHHHHHHHHHH
Confidence            599999999999999999999999999999888987777765 46777899985      89999999987766666555


Q ss_pred             HHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHHHHHHhhcCCchhhHhcCCccchhhhchhhHHHHHHHHHHHHHHH
Q 015791          264 QFSFFIHFQKYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYGV  343 (400)
Q Consensus       264 ~~G~~~~~~~~v~g~~~~~~~~l~~~~~~~~~~~~~~~ii~di~D~egD~~~GirTlpV~lG~k~a~~l~~~l~~~ay~~  343 (400)
                      .+|+..     +.|.. .. ...+.+.....+|+.+.+++++++|+|+|++.|+||+|+++|++...+++ .+..+.+..
T Consensus       153 l~g~~a-----v~g~~-~~-~~~~~l~~~~~~W~~~~d~~ya~~D~e~D~~~Gi~sl~v~~G~~~~~~i~-~~~~~~~~~  224 (289)
T PLN02809        153 LLGWAA-----VKGSL-DP-AVVLPLYASGVCWTLVYDTIYAHQDKEDDLKVGVKSTALRFGDDTKLWLT-GFGAASIGG  224 (289)
T ss_pred             HHHHHH-----HhCCC-Ch-HHHHHHHHHHHHHHHHHHHHHHHhchhhHHhCCCcccchhhcHHHHHHHH-HHHHHHHHH
Confidence            455422     22322 11 12222455556678899999999999999999999999999999776665 355555665


Q ss_pred             HHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHccCCChHHHHHHHH
Q 015791          344 SVIVGASSSFQLVKLVSIIGHSTLAFLLWLRAQTVDLSNNASTYSFYM  391 (400)
Q Consensus       344 ~~~~g~~~~~~~~~~~~~~g~~~l~~~l~~~~~~~d~~~~~~~~~f~~  391 (400)
                      ...++.....++   .+.+++++.+..+++|++.+|.+|+++|.++|+
T Consensus       225 l~~~g~~~~~~~---~~~~~~~~~~~~l~~~~~~v~~~~~~~~~~~F~  269 (289)
T PLN02809        225 LALSGYNAGLGW---PYYAGLAAAAGHLAWQIQTVDLSSRADCNRKFV  269 (289)
T ss_pred             HHHHHHHhcCcH---HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence            555666555443   334567777888999999999999999988765

>PRK09573 (S)-2,3-di-O-geranylgeranylglyceryl phosphate synthase; Reviewed

Probab=100.00  E-value=1.4e-33  Score=274.36  Aligned_cols=255  Identities=19%  Similarity=0.240  Sum_probs=189.6

Q ss_pred             HHHHHHhhhccchHHHHHHHHHHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccCCCCCCccc
Q 015791          111 KLHALYVFTRPFAMIGTIVGITSIAILPLQSFADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADVEIDKVNKPDLPLAS  190 (400)
Q Consensus       111 ~l~~y~~l~Rp~~~~~~~l~~l~g~~lA~~~~~~~~~~~l~~~ll~ll~~~l~~~a~~~iNd~~D~e~D~inkp~RPl~s  190 (400)
                      ++++|++++||+++..++++.+.|.++|.+..  .++.   .+++++++.+++++++|++||++|+|+|++|+|+||+++
T Consensus         2 ~~~~~~~l~Rp~~~~~~~~~~~~g~~la~~~~--~~~~---~~~l~~l~~~l~~~~~~~iNd~~D~~iD~~~~~~Rpl~s   76 (279)
T PRK09573          2 SIKAYFELIRPKNCIGASIGAIIGYLIASNFK--IDLK---GIILAALVVFLVCAGGNVINDIYDIEIDKINKPERPIPS   76 (279)
T ss_pred             CHHHHHHHHhHhHHHHHHHHHHHHHHHHccCC--cchH---HHHHHHHHHHHHHHHHHHHHhhcccccccccCCCCCcCC
Confidence            36889999999999999999999999985422  2332   245778899999999999999999999999999999999


Q ss_pred             CcCCHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHhhccCCccccccccCCCcchHHHHHHHHHHHHHHHHHH
Q 015791          191 GDLSMGTGLAITLTLSLTSLAIALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQFSFFIH  270 (400)
Q Consensus       191 G~is~~~a~~~~~~l~~lgl~l~~~lg~~~l~~~l~~~~~l~~~Ys~~~pplrlKr~~~~g~l~i~~~~g~~~~~G~~~~  270 (400)
                      |++|+++++.++.++.++++.+++.+|+.++.+++ ++.++.++||.     ++||++.++|++++...|..+..|....
T Consensus        77 G~is~~~a~~~~~~l~~~~~~l~~~l~~~~~~l~~-~~~~~~~~Ys~-----~lKr~~~~~~~~vg~~~G~~~~~g~~~~  150 (279)
T PRK09573         77 GRISLKEAKIFSITLFIVGLILSIFINIYAFLIAL-LNSILLYLYAK-----DLKKTGLIGNLIVAYLTGLSFIFGGLAV  150 (279)
T ss_pred             CccCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHHH-----HHhcCCcHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999889988877765 46667899985     3899999899999988887766665332


Q ss_pred             HHHHhhcCCccchHHHHHHHHHHHHHHHHHHHHhhcCCchhhHhcCCccchhhhchhhHHHHHHHHHHHHHHHHHHHHHh
Q 015791          271 FQKYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYGVSVIVGAS  350 (400)
Q Consensus       271 ~~~~v~g~~~~~~~~l~~~~~~~~~~~~~~~ii~di~D~egD~~~GirTlpV~lG~k~a~~l~~~l~~~ay~~~~~~g~~  350 (400)
                            +.  ..  ..+++.....+|+++++++||++|+|+|+++|+||+|+++|+|++.++......+......+....
T Consensus       151 ------~~--~~--~~~~l~~~~f~~~~~~~~~~~~~D~~~D~~~G~~tlpv~~G~~~a~~~~~~~~~~~~~~~~~~~~~  220 (279)
T PRK09573        151 ------FN--VL--RIIILFLCAFFSTWSREIVKDIEDIEGDLKENVITLPIKYGIKKSWYIAKILLILAIVLSPLPYFL  220 (279)
T ss_pred             ------cc--ch--HHHHHHHHHHHHHHHHHHHhhhhhhhhHHHCCCccccHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                  21  11  122333444456778899999999999999999999999999999887766554444433322111


Q ss_pred             hhhhhHHHHHHHHHHHHHHHHHHH-HHHccCCChHHHHHH
Q 015791          351 SSFQLVKLVSIIGHSTLAFLLWLR-AQTVDLSNNASTYSF  389 (400)
Q Consensus       351 ~~~~~~~~~~~~g~~~l~~~l~~~-~~~~d~~~~~~~~~f  389 (400)
                      ...+   +.+.++.++....+.++ .+..+.++++.|+..
T Consensus       221 ~~~~---~~y~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  257 (279)
T PRK09573        221 GIFG---IYYLIVVIICDILFIIAMLILLKNPSIEGASKA  257 (279)
T ss_pred             HHHH---HHHHHHHHHHhHHHHHHHHHHHcCCCHHHHHHH
Confidence            1122   33444444444444555 334455566666543

>PRK07566 bacteriochlorophyll/chlorophyll a synthase; Reviewed

Probab=100.00  E-value=1.8e-33  Score=277.80  Aligned_cols=226  Identities=20%  Similarity=0.237  Sum_probs=175.7

Q ss_pred             HHHHHHHHHhhhccchHHHHHHHHHHHHHHhcccCCCCChHHHHH-HHHHHHHHHHHHHHHhhhhhcccccccccCCCCC
Q 015791          108 LLKKLHALYVFTRPFAMIGTIVGITSIAILPLQSFADLTPKYFME-FLKALLSAVLMNNYVGTVNQVADVEIDKVNKPDL  186 (400)
Q Consensus       108 ~~~~l~~y~~l~Rp~~~~~~~l~~l~g~~lA~~~~~~~~~~~l~~-~ll~ll~~~l~~~a~~~iNd~~D~e~D~inkp~R  186 (400)
                      .++++++|++++||+++..++.+++.|.+.+..  .+........ ++..+++..++++++|++|||+|+|+|++|+|+|
T Consensus        23 ~~~~~~~~~~l~RP~~~~~~~~~~~~g~~~~~~--~~~~~~~~~~~~l~~~l~~~l~~~~~~~~Nd~~D~~~D~~~~~~R  100 (314)
T PRK07566         23 TTSIWKARLQLMKPITWFPPMWAFLCGAVSSGA--FGWTLENVLKLLAGMLLAGPLLCGTSQTLNDYFDREVDAINEPYR  100 (314)
T ss_pred             cchHHHHHHHHhCCcchHHHHHHHHHHHHHcCC--CCcchhHHHHHHHHHHHHHHHHHHHHHHHhhhhccCccccCCCCC
Confidence            467889999999999999988888888876532  1222211111 2345677888999999999999999999999999


Q ss_pred             CcccCcCCHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHhhccCCccccccccCCCcchHHHHHHHHHHHHHH
Q 015791          187 PLASGDLSMGTGLAITLTLSLTSLAIALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQFS  266 (400)
Q Consensus       187 Pl~sG~is~~~a~~~~~~l~~lgl~l~~~lg~~~l~~~l~~~~~l~~~Ys~~~pplrlKr~~~~g~l~i~~~~g~~~~~G  266 (400)
                      |+++|++|+++++.++.++.++++.+++.+|++.+.+++ ++++++++||.  ||+++||+++++|+.++..++..+.++
T Consensus       101 pl~sG~is~~~a~~~~~~l~~~~~~l~~~l~~~~~~l~l-~~~~~~~~Yt~--gP~~lK~~~~~g~i~vg~~~g~~~~~~  177 (314)
T PRK07566        101 PIPSGAISLRWVLYLIAVLTVLGLAVAYLLGPWVFLAAL-LGLFLAWIYSA--PPLRLKQNGWLGNYAVGLSYEGLPWWA  177 (314)
T ss_pred             CCCCceeCHHHHHHHHHHHHHHHHHHHHHHChHHHHHHH-HHHHHHHHhcC--CccccccccchhhHHHHHHHHHHHHHH
Confidence            999999999999999999999999999889987777664 57778999994  899999999889998887766543332


Q ss_pred             HHHHHHHHhhcCCccchHHHHHHHHHHHHHHHHHHHHhhcCCchhhHhcCCccchhhhchhhHHHHHHHHHHHHHHHH
Q 015791          267 FFIHFQKYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYGVS  344 (400)
Q Consensus       267 ~~~~~~~~v~g~~~~~~~~l~~~~~~~~~~~~~~~ii~di~D~egD~~~GirTlpV~lG~k~a~~l~~~l~~~ay~~~  344 (400)
                      ....    +.++..  +...++..++.++++.+++++||++|+|+|+++|+||+|+++|++++.+++..++.++|+..
T Consensus       178 g~~~----~~~~~~--~~~~~l~~~~~~l~~~~~~~~~d~~D~e~D~~aG~~Tlpv~~G~~~a~~l~~~l~~~~~~~~  249 (314)
T PRK07566        178 GAAA----FGAGLP--SWPIVILALLYSLGAHGIMTLNDFKSVEGDRQLGLRSLPVVFGEKNAARIACVVIDLFQLAV  249 (314)
T ss_pred             HHHH----hccCCC--CHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHcCCcccceeEcHHHHHHHHHHHHHHHHHHH
Confidence            2211    111122  22334445555567888899999999999999999999999999999998877777776654

>PLN00012 chlorophyll synthetase; Provisional

Probab=100.00  E-value=8.7e-33  Score=277.50  Aligned_cols=272  Identities=18%  Similarity=0.200  Sum_probs=184.8

Q ss_pred             HHHHHHHHHhhhccchHHHHHHHHHHHHHHhcccCCCCChHH---HHHHHHHHHHHHHHHHHHhhhhhcccccccccCCC
Q 015791          108 LLKKLHALYVFTRPFAMIGTIVGITSIAILPLQSFADLTPKY---FMEFLKALLSAVLMNNYVGTVNQVADVEIDKVNKP  184 (400)
Q Consensus       108 ~~~~l~~y~~l~Rp~~~~~~~l~~l~g~~lA~~~~~~~~~~~---l~~~ll~ll~~~l~~~a~~~iNd~~D~e~D~inkp  184 (400)
                      -.+++++|++++||+++...++++++|.+.. +   .+++..   +..++..+++..++++++|++|||+|+|+|++|+|
T Consensus        81 ~~~~~k~~l~L~RP~t~~~~~~~v~~G~~~~-g---~~~~~~~~~~~~ll~~ll~~~L~~~~an~iNDy~D~~iD~~~~~  156 (375)
T PLN00012         81 ETDIWKIRLQLTKPVTWPPLVWGVLCGAAAS-G---NFHWTLEDVAKSIVCMLMSGPFLTGYTQTINDWYDREIDAINEP  156 (375)
T ss_pred             chHHHHHHHHHhCHHHHHHHHHHHHHHHHHc-C---CCCchhhhHHHHHHHHHHHHHHHHHHHHHHHCeecHhhhccCCC
Confidence            3467899999999999999999999998853 2   233321   11235567788899999999999999999999999


Q ss_pred             CCCcccCcCCHHHHHHHHHHHHHHHHHHHHHh-------chhHHHHHHHHHHHHHhhccCCccccccccCCCcchHHHHH
Q 015791          185 DLPLASGDLSMGTGLAITLTLSLTSLAIALSL-------QSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVT  257 (400)
Q Consensus       185 ~RPl~sG~is~~~a~~~~~~l~~lgl~l~~~l-------g~~~l~~~l~~~~~l~~~Ys~~~pplrlKr~~~~g~l~i~~  257 (400)
                      +||+++|++++++++.+..++.++++.+++.+       +++.+.+++ ++++++++||  .||+++||++++|++.++.
T Consensus       157 ~Rpi~sG~Is~~~al~~~~~l~~~~l~l~~~L~~~~~~~~~~~~~l~l-~gi~l~~~YS--~pPl~lKr~~~~G~v~lG~  233 (375)
T PLN00012        157 YRPIPSGAISENEVITQIWVLLLGGLGLAYTLDVWAGHDFPIVFYLAL-GGSLLSYIYS--APPLKLKQNGWIGNYALGA  233 (375)
T ss_pred             CCCcCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHH-HHHHHhhhhc--CCchhhhHhccHhHHHHHH
Confidence            99999999999999987766666666555443       344444443 5677899999  4899999999999987776


Q ss_pred             HHHHHHHHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHHHHHHhhcCCchhhHhcCCccchhhhchhhHHHHHHHHH
Q 015791          258 VFGLVYQFSFFIHFQKYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYAL  337 (400)
Q Consensus       258 ~~g~~~~~G~~~~~~~~v~g~~~~~~~~l~~~~~~~~~~~~~~~ii~di~D~egD~~~GirTlpV~lG~k~a~~l~~~l~  337 (400)
                      .++..+.++.+.     +.|. .  +...++..++.+++++++++.||++|+|+|++.|+||+||++|++++.+++..++
T Consensus       234 ~~~~lp~~~g~a-----~~g~-~--s~~~illal~~~l~~lai~ivnd~~Die~Dr~aG~~TLpV~~G~~~a~~l~~~~l  305 (375)
T PLN00012        234 SYISLPWWAGQA-----LFGT-L--TPDVVVLTLLYSIAGLGIAIVNDFKSIEGDRALGLQSLPVAFGVETAKWICVGSI  305 (375)
T ss_pred             HHHHHHHHHHHH-----HcCC-C--CHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHcCCcccceeechHHHHHHHHHHH
Confidence            665443322221     2232 2  2233444555667788999999999999999999999999999999998876544


Q ss_pred             HHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHhh
Q 015791          338 FFAYGVSVIVGASSSFQLVKLVSIIGHSTLAFLLWLRAQTVDLSNNASTYSFYMFIWKAIV  398 (400)
Q Consensus       338 ~~ay~~~~~~g~~~~~~~~~~~~~~g~~~l~~~l~~~~~~~d~~~~~~~~~f~~~i~~l~~  398 (400)
                      .+..+..+  ++......  ..+....+.+....+.+..+...+|+.++...|...=+.++
T Consensus       306 ~l~~l~~~--~~l~~~~~--~~y~~~~~~l~l~~l~~~~~~~~~~p~~~~~~~~~~a~~~~  362 (375)
T PLN00012        306 DITQLSVA--GYLLAIGK--PYYALALLGLIIPQIFFQFKYFLPDPVKNDVKYQASAQPFL  362 (375)
T ss_pred             HHHHHHHH--HHHHHHhH--HHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence            44433322  22221111  11111111112222223333444577777777766544443

>PRK12888 ubiA prenyltransferase; Reviewed

Probab=100.00  E-value=1.4e-33  Score=274.72  Aligned_cols=258  Identities=16%  Similarity=0.121  Sum_probs=198.0

Q ss_pred             HHHHHhhhccchHHHHHHHHHHHHHHhcc-cCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccCC--CCCCc
Q 015791          112 LHALYVFTRPFAMIGTIVGITSIAILPLQ-SFADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADVEIDKVNK--PDLPL  188 (400)
Q Consensus       112 l~~y~~l~Rp~~~~~~~l~~l~g~~lA~~-~~~~~~~~~l~~~ll~ll~~~l~~~a~~~iNd~~D~e~D~ink--p~RPl  188 (400)
                      +++|++++||++.+.+...++.|.+.+.. ..+.+++..   +++.+++.+++++++|++||++|+|+|++|+  |+||+
T Consensus         2 ~~~~~~l~r~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~---~~l~~l~~~l~~~a~~~~Nd~~Dr~iD~~~~RT~~RPL   78 (284)
T PRK12888          2 VRAFLRLVAIEHSVFALPFAYIAALTAMFASDGSVHWAD---LLLVTVAMVGARTFAMAANRIIDREIDARNPRTAGREL   78 (284)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHH---HHHHHHHHHHHHHHHHHHHhHHhhCCCCCCCCCCCCCC
Confidence            67999999999988877777767666631 112234322   4567889999999999999999999999998  59999


Q ss_pred             ccCcCCHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHhhccCCccccccccCCCcchHHHHHHHHHHHHHHHH
Q 015791          189 ASGDLSMGTGLAITLTLSLTSLAIALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQFSFF  268 (400)
Q Consensus       189 ~sG~is~~~a~~~~~~l~~lgl~l~~~lg~~~l~~~l~~~~~l~~~Ys~~~pplrlKr~~~~g~l~i~~~~g~~~~~G~~  268 (400)
                      |+|++|+++++.+.+++.++++.++..+|+.++.++. ++++....|+.      .||++.++++..+...+..+..|++
T Consensus        79 ~sG~is~~~a~~~~~~~~~~~l~l~~~l~~~~~~l~~-~~~~~~~~Y~~------~Kr~t~~~~~~lg~~~~~~~l~g~~  151 (284)
T PRK12888         79 VTGAVSVRTAWTGALVALAVFLGAAALLNPLCLALAP-LAVAPLVVYPY------AKRFTNFPHAILGLAQAVGPVGAWI  151 (284)
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHHH------hhcccchhhHHHHHHHHHHHHHHHH
Confidence            9999999999999988888888888888988777664 45556788985      7999999999877766655545533


Q ss_pred             HHHHHHhhcCCccchHHHHHHHHHHHHHHHHHHHHhhcCCchhhHhcCCccchhhhchhhHHHHHHHHHHHHHHHHHHHH
Q 015791          269 IHFQKYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYGVSVIVG  348 (400)
Q Consensus       269 ~~~~~~v~g~~~~~~~~l~~~~~~~~~~~~~~~ii~di~D~egD~~~GirTlpV~lG~k~a~~l~~~l~~~ay~~~~~~g  348 (400)
                      .     +.|. .  +...+++.+...+|+.+++++|+++|+|+|++.|+||+|+++|+|++.++...+..+.++...+.+
T Consensus       152 a-----~~g~-~--~~~~~ll~~~~~~w~~~~~~i~a~~D~e~D~~~Gv~sl~v~~G~~~a~~~~~~~~~~~~~ll~~~~  223 (284)
T PRK12888        152 A-----VTGT-W--SWPAVLLGLAVGLWIGGFDLIYACQDAEVDRRIGVRSVPARFGVRAALWASRVAHVVTFALFVWFG  223 (284)
T ss_pred             H-----HcCC-C--CHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHCCCcCcchhhCchhHHHHHHHHHHHHHHHHHHHH
Confidence            2     1132 2  223344556667788899999999999999999999999999999998877666666666555556


Q ss_pred             HhhhhhhHHHHHHHHHHHHHHHHHHHHHHccCCChHHHH-HHH
Q 015791          349 ASSSFQLVKLVSIIGHSTLAFLLWLRAQTVDLSNNASTY-SFY  390 (400)
Q Consensus       349 ~~~~~~~~~~~~~~g~~~l~~~l~~~~~~~d~~~~~~~~-~f~  390 (400)
                      .....++.   +.++..+.+..+.+|++.+|.+|++.|. .||
T Consensus       224 ~~~~~~~~---y~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ff  263 (284)
T PRK12888        224 LAVGFGAL---WWIGLAITAGAFAYEHAIVSPTDLSRVNRAFF  263 (284)
T ss_pred             HHhCCcHH---HHHHHHHHHHHHHHHHHHcCccCHHHHHHHHH
Confidence            65555543   3455667778888999999999988886 555

>PRK12884 ubiA prenyltransferase; Reviewed

Probab=100.00  E-value=2.7e-33  Score=272.10  Aligned_cols=256  Identities=19%  Similarity=0.290  Sum_probs=193.1

Q ss_pred             HHHHHHHhhhccchHHHHHHHHHHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccCCCCCCcc
Q 015791          110 KKLHALYVFTRPFAMIGTIVGITSIAILPLQSFADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADVEIDKVNKPDLPLA  189 (400)
Q Consensus       110 ~~l~~y~~l~Rp~~~~~~~l~~l~g~~lA~~~~~~~~~~~l~~~ll~ll~~~l~~~a~~~iNd~~D~e~D~inkp~RPl~  189 (400)
                      +++++|++++||+++..+.++.+.|.++|.+..+   +.   .+++++++.+++++++|++||++|+|+|++|+|+||++
T Consensus         2 ~~l~~~~~l~R~~~~~~~~~~~~~g~~la~~~~~---~~---~~~l~~l~~~l~~~a~~~~Nd~~D~~~D~~~r~~Rpl~   75 (279)
T PRK12884          2 TKMKAYLELLRPEHGLMAGIAVVLGAIIALGGLP---LD---EALLGFLTAFFASGSANALNDYFDYEVDRINRPDRPIP   75 (279)
T ss_pred             hHHHHHHHHhhhhHHHHHHHHHHHHHHHHCCCCc---hH---HHHHHHHHHHHHHHHHHHHHhhhhHhhhhccCCCCCCC
Confidence            4789999999999999999999999999854322   21   24567789999999999999999999999999999999


Q ss_pred             cCcCCHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHhhccCCccccccccCCCcchHHHHHHHHHHHHHHHHH
Q 015791          190 SGDLSMGTGLAITLTLSLTSLAIALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQFSFFI  269 (400)
Q Consensus       190 sG~is~~~a~~~~~~l~~lgl~l~~~lg~~~l~~~l~~~~~l~~~Ys~~~pplrlKr~~~~g~l~i~~~~g~~~~~G~~~  269 (400)
                      +|++|+++++.+++++.++++.+++.+|+..+.+++ +++++++.||.     ++||++++++++++..++..+..|...
T Consensus        76 ~G~is~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~Ys~-----~lK~~~~~~~~~~~~~~~~~~~~g~~~  149 (279)
T PRK12884         76 SGRISRREALLLAILLFILGLIAAYLISPLAFLVVI-LVSVLGILYNW-----KLKEYGLIGNLYVAFLTGMTFIFGGIA  149 (279)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHHH-----hhccccchhHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999888987777664 56778999995     489999889998887776555455332


Q ss_pred             HHHHHhhcCCccchHHHHHHHHHHHHHHHHHHHHhhcCCchhhHhcCCccchhhhchhhHHHHHHHHHHHHHHHHHHHHH
Q 015791          270 HFQKYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYGVSVIVGA  349 (400)
Q Consensus       270 ~~~~~v~g~~~~~~~~l~~~~~~~~~~~~~~~ii~di~D~egD~~~GirTlpV~lG~k~a~~l~~~l~~~ay~~~~~~g~  349 (400)
                            .+...   ...+.......+|+.+.++++|++|+|+|+++|+||+|+++|+|++.++...+..+.++...+...
T Consensus       150 ------~~~~~---~~~~~l~~~~~~~~~~~~~~~~~~D~e~D~~~G~~Tl~v~~G~~~~~~~~~~~~~~~~~~~~~~~~  220 (279)
T PRK12884        150 ------VGELN---EAVILLAAMAFLMTLGREIMKDIEDVEGDRLRGARTLAILYGEKIAGRIAAALFILAVLLSPLPYL  220 (279)
T ss_pred             ------hCCCc---hHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHcCCeeechHhcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                  12221   123343445556778889999999999999999999999999999998877776666655444333


Q ss_pred             hhhhhhHHHHHHHHHHHHHHHHHHHH-HHccCCChHHHHHH
Q 015791          350 SSSFQLVKLVSIIGHSTLAFLLWLRA-QTVDLSNNASTYSF  389 (400)
Q Consensus       350 ~~~~~~~~~~~~~g~~~l~~~l~~~~-~~~d~~~~~~~~~f  389 (400)
                      ....++.   +.+...+....+.++. +.++.+|++.++.+
T Consensus       221 ~~~~~~~---y~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  258 (279)
T PRK12884        221 FGIFNIL---YLAPVLVADLIFLYSAYSLLRSQDRETIRKV  258 (279)
T ss_pred             HHHhhHH---HHHHHHHHHHHHHHHHHHHhcCCCHHHHHHH
Confidence            3323333   3333334444444554 45565666666654

>PRK12886 ubiA prenyltransferase; Reviewed

Probab=100.00  E-value=4.3e-33  Score=272.17  Aligned_cols=262  Identities=19%  Similarity=0.179  Sum_probs=195.3

Q ss_pred             HHHHHHHHHhhhccchHHHHHHHHHHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccCC--CC
Q 015791          108 LLKKLHALYVFTRPFAMIGTIVGITSIAILPLQSFADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADVEIDKVNK--PD  185 (400)
Q Consensus       108 ~~~~l~~y~~l~Rp~~~~~~~l~~l~g~~lA~~~~~~~~~~~l~~~ll~ll~~~l~~~a~~~iNd~~D~e~D~ink--p~  185 (400)
                      +.+++++|+|++||++......+.+.|.++|.++.++  +.   .+++++++.+++++++|++|||+|+|+|++|+  ++
T Consensus         4 ~~~~~~~y~~L~r~~~~~~~~~~~~~g~~lA~~~~~~--~~---~l~~~~l~~~l~~~a~~~~Nd~~D~~iD~~~~RT~~   78 (291)
T PRK12886          4 LLTKLKVFLEMIKFSHTLFALPFAGIGAVLAALGLPG--AS---QLDWILMAMVGARTAAMGFNRLIDAEIDARNPRTAG   78 (291)
T ss_pred             hHHHHHHHHHHhCccchHHHHHHHHHHHHHhccCCCC--HH---HHHHHHHHHHHHHHHHHHHHhHHhhccCCCCCCCCC
Confidence            4577899999999999999888889999998543332  21   24567789999999999999999999999998  58


Q ss_pred             CCcccCcCCHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHhhccCCccccccccCCCcchHHHHHHHHHHHHH
Q 015791          186 LPLASGDLSMGTGLAITLTLSLTSLAIALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQF  265 (400)
Q Consensus       186 RPl~sG~is~~~a~~~~~~l~~lgl~l~~~lg~~~l~~~l~~~~~l~~~Ys~~~pplrlKr~~~~g~l~i~~~~g~~~~~  265 (400)
                      ||+++|++|+++|..+.+.+.+.++.+++..|+.+..+++ +++++.+.|+.      +||++.++++..+...+..+..
T Consensus        79 RPL~sG~is~~~A~~~~~~~~~~~~~l~~~~~~~~~~l~~-~~~~~~~~Y~~------~Kr~t~~~~~~~g~~~~~~~l~  151 (291)
T PRK12886         79 RAIPAGLISKGSAILFIVLSSLLMLFAAWFLNPLCLYLSP-PALFFLLLYSY------CKRFTALAHVVLGFCLALAPLG  151 (291)
T ss_pred             CCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhh------hhccccccHHHHHHHHHHHHHH
Confidence            9999999999999988776666666666778988777765 35666899995      7999999998777665554444


Q ss_pred             HHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHHHHHHhhcCCchhhHhcCCccchhhhchhhHHHHHHHHHHHHHHHHH
Q 015791          266 SFFIHFQKYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYGVSV  345 (400)
Q Consensus       266 G~~~~~~~~v~g~~~~~~~~l~~~~~~~~~~~~~~~ii~di~D~egD~~~GirTlpV~lG~k~a~~l~~~l~~~ay~~~~  345 (400)
                      |++.     +.| ...  ...+++.+.+.+|+.+.+++++++|+|+|+++|+||+|+++|++++.++......+.+...+
T Consensus       152 g~~a-----~~g-~~~--~~~~ll~~~~~lw~~~~~~~~a~~D~e~D~~aGi~slpv~~G~~~~~~~~~~~~~~~~~~~~  223 (291)
T PRK12886        152 AWIA-----IRG-TIE--LPAILLGLAVLFWVAGFDILYALQDLEFDRKEGLHSIPAKLGVNGSLWIARVFHLLMIGFLF  223 (291)
T ss_pred             HHHH-----HcC-CCc--HHHHHHHHHHHHHHHHHHHHHHhccHHhHHHcCCcCcchhcCchhHHHHHHHHHHHHHHHHH
Confidence            4332     113 222  23344455566778889999999999999999999999999999998876666566665555


Q ss_pred             HHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHccCCC-hHHHHHHHHH
Q 015791          346 IVGASSSFQLVKLVSIIGHSTLAFLLWLRAQTVDLSN-NASTYSFYMF  392 (400)
Q Consensus       346 ~~g~~~~~~~~~~~~~~g~~~l~~~l~~~~~~~d~~~-~~~~~~f~~~  392 (400)
                      +.+.....++   .+.++.++....+.++.+..+.+| ++.|+++|.+
T Consensus       224 ~~~~~~~~~~---~y~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~F~~  268 (291)
T PRK12886        224 ALGISAGLGP---WFLAGLAVTGILLLYEHWLLRGGDLTRLDAAFFNM  268 (291)
T ss_pred             HHHHHhcCcH---HHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHH
Confidence            5555444443   334444445555567888888877 4577775554

>PRK12847 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed

Probab=100.00  E-value=6.3e-33  Score=270.49  Aligned_cols=262  Identities=18%  Similarity=0.194  Sum_probs=194.0

Q ss_pred             HHHHHHHHHhhhccchHHH---HHHHHHHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccCC-
Q 015791          108 LLKKLHALYVFTRPFAMIG---TIVGITSIAILPLQSFADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADVEIDKVNK-  183 (400)
Q Consensus       108 ~~~~l~~y~~l~Rp~~~~~---~~l~~l~g~~lA~~~~~~~~~~~l~~~ll~ll~~~l~~~a~~~iNd~~D~e~D~ink-  183 (400)
                      ..+++++|++++||+++.+   ..++++.|.++|.... ..++.   .+++++++.+++++++|++|||+|+|+|+.|+ 
T Consensus         3 ~~~~~~~~~~l~R~~kp~~~~l~~~~~~~g~~la~~~~-~~~~~---~~ll~~l~~~l~~~a~~~~Nd~~D~~iD~~~~R   78 (285)
T PRK12847          3 ILMKFLAYFKLMRLHKPIGILLVFFPTLFGLLLASHSL-LPDIS---LLVLFIIGSVLMRSAGCIINDIFDRKIDKHVAR   78 (285)
T ss_pred             hHHHHHHHHHHHCcchHHHHHHHHHHHHHHHHHHhCcc-CCcHH---HHHHHHHHHHHHHHHHHHHHhHHHhhhccCCCc
Confidence            3457899999999998775   4567788888885432 23332   24677889999999999999999999999755 


Q ss_pred             -CCCCcccCcCCHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHhhccCCccccccccCCCcchHHHHHHHHHH
Q 015791          184 -PDLPLASGDLSMGTGLAITLTLSLTSLAIALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLV  262 (400)
Q Consensus       184 -p~RPl~sG~is~~~a~~~~~~l~~lgl~l~~~lg~~~l~~~l~~~~~l~~~Ys~~~pplrlKr~~~~g~l~i~~~~g~~  262 (400)
                       ++||+++|++|+++++.+++++.++++.+++.+|+..+.+++ ++.++++.||.      .||++.++++..+..++..
T Consensus        79 t~~Rpl~sG~is~~~a~~~~~~l~~~~~~l~~~~~~~~~~~~~-~~~~~~~~Y~~------~Kr~~~~~~~~~g~~~~~~  151 (285)
T PRK12847         79 TKNRPLASGALSVKQALILLFILLLIALVILLLLNKTTIYLSF-IAVILIVLYPL------MKRFFYWPQLFLGFTFNMG  151 (285)
T ss_pred             ccCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHhccc------cccCCcccHHHHHHHHHHH
Confidence             589999999999999999999999999998888988777765 56777899985      7999988998777666654


Q ss_pred             HHHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHHHHHHhhcCCchhhHhcCCccchhhhchhhHHHHHHHHHHHHHH
Q 015791          263 YQFSFFIHFQKYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYG  342 (400)
Q Consensus       263 ~~~G~~~~~~~~v~g~~~~~~~~l~~~~~~~~~~~~~~~ii~di~D~egD~~~GirTlpV~lG~k~a~~l~~~l~~~ay~  342 (400)
                      +..|+..      .++..  +...++..+...+|+.+.+++++++|+|+|+++|+||+|+++|++++.++........+.
T Consensus       152 ~l~~~~a------~~g~~--~~~~~~l~~~~~~w~~~~~~~~a~~D~e~D~~~G~~tl~v~~G~~~a~~~~~~~~~~~~~  223 (285)
T PRK12847        152 ILMAFAA------VQNQL--DIEAILLYIGCIFWTIGYDTIYAYQDKKDDLKIGVKSTAIYFGNKTRKYILRLYIISLIL  223 (285)
T ss_pred             HHHHHHH------HcCCC--cHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHcCCchhHHHhccccHHHHHHHHHHHHHH
Confidence            4344322      12222  223344455666788899999999999999999999999999999998877666555544


Q ss_pred             HHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHccCCChHHHHHHHHH
Q 015791          343 VSVIVGASSSFQLVKLVSIIGHSTLAFLLWLRAQTVDLSNNASTYSFYMF  392 (400)
Q Consensus       343 ~~~~~g~~~~~~~~~~~~~~g~~~l~~~l~~~~~~~d~~~~~~~~~f~~~  392 (400)
                      ..+ .+...+..+.   +.++.++....++++...+|.+|++.|+++|+.
T Consensus       224 ~~~-~~~~~~~~~~---~y~~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~  269 (285)
T PRK12847        224 WLI-LGIISSLHNI---FYLAILAAAGIFYYQYKLLDFDNPANCMYAFKA  269 (285)
T ss_pred             HHH-HHHHhcCcHH---HHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            433 3333333221   122333344567788888898888877765443

>PRK12848 ubiA 4-hydroxybenzoate octaprenyltransferase; Reviewed

Probab=100.00  E-value=5.2e-33  Score=270.70  Aligned_cols=259  Identities=18%  Similarity=0.177  Sum_probs=192.9

Q ss_pred             HHHHHHHHhhhccchHHHHH---HHHHHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccCC--
Q 015791          109 LKKLHALYVFTRPFAMIGTI---VGITSIAILPLQSFADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADVEIDKVNK--  183 (400)
Q Consensus       109 ~~~l~~y~~l~Rp~~~~~~~---l~~l~g~~lA~~~~~~~~~~~l~~~ll~ll~~~l~~~a~~~iNd~~D~e~D~ink--  183 (400)
                      ++++++|++++|++++....   ++.+.|.++|.+..+  ++.   .+++++++.+++++++|++||++|+|+|+.++  
T Consensus         2 ~~~~~~y~~L~R~~kp~~~~l~~~p~~~g~~la~~~~~--~~~---~~~l~~~g~~l~~~a~~~~Nd~~D~~iD~~~~Rt   76 (282)
T PRK12848          2 QNRLLAYARLMRLDKPIGTLLLLWPTLWALWLAADGIP--DLW---VLVVFVLGVFLMRAAGCVINDYADRDFDGHVKRT   76 (282)
T ss_pred             chhHHHHHHHHCccchHHHHHHHHHHHHHHHHHcCCCC--CHH---HHHHHHHHHHHHHHHHHHHHhhHHhccCCCCCCC
Confidence            35789999999988766554   446778888754332  222   14566788899999999999999999998755  


Q ss_pred             CCCCcccCcCCHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHhhccCCccccccccCCCcchHHHHHHHHHHH
Q 015791          184 PDLPLASGDLSMGTGLAITLTLSLTSLAIALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVY  263 (400)
Q Consensus       184 p~RPl~sG~is~~~a~~~~~~l~~lgl~l~~~lg~~~l~~~l~~~~~l~~~Ys~~~pplrlKr~~~~g~l~i~~~~g~~~  263 (400)
                      ++||+++|++|++++..+++++.++++.+++.+|+..+.+++ ++.++.++|+.      .||++.++++..+...|..+
T Consensus        77 ~~RPl~sG~is~~~a~~~~~~l~~~~~~l~~~l~~~~~~l~~-~~~~~~~~Y~~------~Kr~~~~~~~~~g~~~g~~~  149 (282)
T PRK12848         77 KNRPLASGAVSEKEALALFVVLVLVAFLLVLTLNTLTIWLSV-AALALAWIYPF------MKRYTHLPQVVLGAAFGWGI  149 (282)
T ss_pred             CCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHHh------HHhcCcccHHHHHHHHHHHH
Confidence            489999999999999999999999999988888988777765 46667899974      79999889987777777655


Q ss_pred             HHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHHHHHHhhcCCchhhHhcCCccchhhhchhhHHHHHHHHHHHHHHH
Q 015791          264 QFSFFIHFQKYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYGV  343 (400)
Q Consensus       264 ~~G~~~~~~~~v~g~~~~~~~~l~~~~~~~~~~~~~~~ii~di~D~egD~~~GirTlpV~lG~k~a~~l~~~l~~~ay~~  343 (400)
                      .+|+...      ++..  +...+++.+...+|+...++.++++|+|+|+++|+||+|+++|+|++.++... ..+....
T Consensus       150 ~~g~~a~------~~~~--~~~~~~l~~~~~~w~~~~~~~~a~~D~e~D~~~G~~tlpv~~G~~~~~~~~~~-~~~~~~~  220 (282)
T PRK12848        150 PMAFAAV------QGSV--PLEAWLLFLANILWTVAYDTQYAMVDRDDDLKIGIKSTAILFGRYDKLIIGLL-QLATLAL  220 (282)
T ss_pred             HHHHHHH------hCCC--cHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHcCCccccHHhccccHHHHHHH-HHHHHHH
Confidence            5564331      2222  22334445556678889999999999999999999999999999988776533 3333333


Q ss_pred             HHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHccCCChHHHHHHHH
Q 015791          344 SVIVGASSSFQLVKLVSIIGHSTLAFLLWLRAQTVDLSNNASTYSFYM  391 (400)
Q Consensus       344 ~~~~g~~~~~~~~~~~~~~g~~~l~~~l~~~~~~~d~~~~~~~~~f~~  391 (400)
                      ..+.+.....++   .+.++..+....+.++...+|.+|+++|.++|.
T Consensus       221 ~~~~~~~~~~~~---~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~  265 (282)
T PRK12848        221 LAWAGWLLGLGW---AYYWGLLVAAALFVYQQKLIRDREREACFKAFL  265 (282)
T ss_pred             HHHHHHHhcCcH---HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence            333344433333   344555667777888999999999888876654

>COG0382 UbiA 4-hydroxybenzoate polyprenyltransferase and related prenyltransferases [Coenzyme metabolism]

Probab=100.00  E-value=2.1e-32  Score=267.27  Aligned_cols=266  Identities=24%  Similarity=0.304  Sum_probs=205.3

Q ss_pred             HHHHHHHHHhhhccchHHHHHH---HHHHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccCCC
Q 015791          108 LLKKLHALYVFTRPFAMIGTIV---GITSIAILPLQSFADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADVEIDKVNKP  184 (400)
Q Consensus       108 ~~~~l~~y~~l~Rp~~~~~~~l---~~l~g~~lA~~~~~~~~~~~l~~~ll~ll~~~l~~~a~~~iNd~~D~e~D~inkp  184 (400)
                      .+.+++.+.+++|+++++.+.+   +.+.|..++....++     +...++++++++++++++|++||++|+|+||+|+|
T Consensus         6 ~~~~~~~~~~l~r~~r~i~~l~~~~~~~~~~~~~~~~~~~-----~~~~~l~~l~~~~~~~ag~~iND~~D~eiD~~n~r   80 (289)
T COG0382           6 LPNKLKALLKLLRLDRPIFNLLLLLPALLGLLLAASGLPS-----LKLLLLAFLAFFLARSAGYVINDLADREIDRINPR   80 (289)
T ss_pred             hHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcCCch-----HHHHHHHHHHHHHHHHHhHHHHHHhhhhccCCCCC
Confidence            4556666666666666665544   445566665422221     22356788999999999999999999999999998


Q ss_pred             --CCCcccCcCCHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHhhccCCccccccccCCCcchHHHHHHHHHH
Q 015791          185 --DLPLASGDLSMGTGLAITLTLSLTSLAIALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLV  262 (400)
Q Consensus       185 --~RPl~sG~is~~~a~~~~~~l~~lgl~l~~~lg~~~l~~~l~~~~~l~~~Ys~~~pplrlKr~~~~g~l~i~~~~g~~  262 (400)
                        +||+++|++|+++++.+.+++.++++.+++.+|+.++.+.+ ++.++.++|+.      +||.+.+++++++..++..
T Consensus        81 t~~RPl~sG~vS~~~a~~~~~~~~~~~~~~a~~l~~~~~~l~~-~~~~l~~~Y~~------~Kr~~~~~~~~lg~~~~~~  153 (289)
T COG0382          81 TKNRPLPSGRVSVKEALLLAILLLLLGLALALLLNPLAFLLSL-AALVLALAYPF------LKRFTFLPQLVLGLAFGLG  153 (289)
T ss_pred             ccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHHH------hhcCCchHHHHHHHHHHHH
Confidence              99999999999999999999999999999999998876654 68888999953      8999999999999888877


Q ss_pred             HHHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHHHHHHhhcCCchhhHhcCCccchhhhchhhHHHHHHHHHHHHHH
Q 015791          263 YQFSFFIHFQKYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYG  342 (400)
Q Consensus       263 ~~~G~~~~~~~~v~g~~~~~~~~l~~~~~~~~~~~~~~~ii~di~D~egD~~~GirTlpV~lG~k~a~~l~~~l~~~ay~  342 (400)
                      +..|....      ++.  .....+++.++..+|+++++++||++|+|+|++.|+||+|+.+|++++.+++.... ...+
T Consensus       154 ~~~g~~a~------~~~--~~~~~~~l~~~~~l~~~~~~~i~~~~D~e~D~~~G~~s~~~~~G~~~a~~l~~~~~-~~~~  224 (289)
T COG0382         154 ALAGAAAV------GGS--LPLLAWLLLLAAILWTLGYDIIYAIQDIEGDRKAGLKSLPVLFGIKKALALALLLL-LASA  224 (289)
T ss_pred             HHHHHHHH------hCc--cchHHHHHHHHHHHHHHHHHHHHhccCccchHhcCCcchHHHhCchhHHHHHHHHH-HHHH
Confidence            77775432      221  12234555677778899999999999999999999999999999999988877665 4444


Q ss_pred             HHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHccCCChHHHHHHHHHHHHH
Q 015791          343 VSVIVGASSSFQLVKLVSIIGHSTLAFLLWLRAQTVDLSNNASTYSFYMFIWKA  396 (400)
Q Consensus       343 ~~~~~g~~~~~~~~~~~~~~g~~~l~~~l~~~~~~~d~~~~~~~~~f~~~i~~l  396 (400)
                      ....++.......  ..+.++..+.+..++++...+|.++++.|..+|..-..+
T Consensus       225 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  276 (289)
T COG0382         225 LLVLLGLLAGLLG--LIYLLGLLVAALLLLYQILIVDVRDPPACFALFDVNLLL  276 (289)
T ss_pred             HHHHHHHHHhhch--HHHHHHHHHHHHHHHHHHHHhcccChHHHHHHHHHhhHH
Confidence            4444444333321  355667777788888999999998999998888765543

>PRK12876 ubiA prenyltransferase; Reviewed

Probab=100.00  E-value=1.9e-32  Score=266.73  Aligned_cols=264  Identities=16%  Similarity=0.155  Sum_probs=196.2

Q ss_pred             HHHHHHHhhhccchHHHHHHHHHHHHHHhc------cc---CCCCChHHHHHHHHHHHHHHHHHHHHhhhhhcccccccc
Q 015791          110 KKLHALYVFTRPFAMIGTIVGITSIAILPL------QS---FADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADVEIDK  180 (400)
Q Consensus       110 ~~l~~y~~l~Rp~~~~~~~l~~l~g~~lA~------~~---~~~~~~~~l~~~ll~ll~~~l~~~a~~~iNd~~D~e~D~  180 (400)
                      ++++.|.+++|.++.+.++.-+..|.++|.      ++   .+  ++   ..+++..++.+++++++|++||+.|+|+|+
T Consensus         2 ~~~~~~~~~i~~~ht~Falpfa~~~~~~a~~~~~~~~~~~~~~--~~---~~~~~~~~a~~~~Rsag~~~Nd~~DrdiD~   76 (300)
T PRK12876          2 MRIKYFQQLINCKYALFSALFLSASTVFALSLPEISFSLFSLG--GI---KTISLGGSAFFCARTVGIIVNQIIDCAIDK   76 (300)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCcCCC--CH---HHHHHHHHHHHHHHHHHHHHHhHHHhcccC
Confidence            468899999999888887777788999984      22   11  22   235677889999999999999999999999


Q ss_pred             cCC--CCCCcccCcCCHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHhhccCCccccccccCCCcchHHHHHH
Q 015791          181 VNK--PDLPLASGDLSMGTGLAITLTLSLTSLAIALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTV  258 (400)
Q Consensus       181 ink--p~RPl~sG~is~~~a~~~~~~l~~lgl~l~~~lg~~~l~~~l~~~~~l~~~Ys~~~pplrlKr~~~~g~l~i~~~  258 (400)
                      +|+  ++||+|+|++|+++|+.+.+.+.+++++++..+|+.++.+++ +++++.+.||.      +||++.++++..+..
T Consensus        77 ~~~RT~~RPLpsG~is~~~A~~~~~~~~~~~~~l~~~ln~l~~~l~~-~~~~~~~iY~~------~KR~t~~~~~vLGl~  149 (300)
T PRK12876         77 KNPRTSSRVLPAKLLSINFSMLLLTLCSFLFLSLCWLLNPLCFSLAV-LSTLLMIIYPY------TKRVTFLCHWILGLV  149 (300)
T ss_pred             CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHHh------HhcCCchhHHHHHHH
Confidence            998  499999999999999999988888888888889998888775 46666789985      899999999877766


Q ss_pred             HHHHHHHHHHHHHHHHhhcCCccchH--HHHHHHHHHHHHHHHHHHHhhcCCchhhHhcCCccchhhhchhhHHHHHHHH
Q 015791          259 FGLVYQFSFFIHFQKYVLGRPVVITR--PLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYA  336 (400)
Q Consensus       259 ~g~~~~~G~~~~~~~~v~g~~~~~~~--~l~~~~~~~~~~~~~~~ii~di~D~egD~~~GirTlpV~lG~k~a~~l~~~l  336 (400)
                      .+..+..|+..     +.+++..+..  ..++......+|..++|++|+++|+|+|++.|+||+|+++|++++.++...+
T Consensus       150 ~~~~~l~~~~A-----v~~~~~~~~l~~~~~lw~~~~~~~~~g~DiiYa~qD~e~D~~~Gl~Slpv~fG~~~a~~ia~~~  224 (300)
T PRK12876        150 YYLAILMNFFA-----IIETPLSFSLFCMASLWGISFGMIIAANDIIYAIQDLEFDRKEGLFSIPARFGEKKAIRIASAN  224 (300)
T ss_pred             HHHHHHHHHHH-----HhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHhhHHHcCCccchHHHCchhHHHHHHHH
Confidence            66655455432     2233221100  1122334445567799999999999999999999999999999887766666


Q ss_pred             HHHHHHHHHHHHHhhhhhhHHHHHHHHHH--HHHHHHHHHHHHccCCChHHHHHHHHH
Q 015791          337 LFFAYGVSVIVGASSSFQLVKLVSIIGHS--TLAFLLWLRAQTVDLSNNASTYSFYMF  392 (400)
Q Consensus       337 ~~~ay~~~~~~g~~~~~~~~~~~~~~g~~--~l~~~l~~~~~~~d~~~~~~~~~f~~~  392 (400)
                      ..++.+..++.+.....++.  .+..+.+  .....+.++.+.+|.++++.|.+||+.
T Consensus       225 ~~l~~~~l~~~g~~~~l~~~--~y~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~F~~  280 (300)
T PRK12876        225 LIASAIAYLLIGYFVSNKKI--FYLCSLVPLTVILKTIKHYSLIDKKKSTLEQKFFLG  280 (300)
T ss_pred             HHHHHHHHHHHHHHhhccHH--HHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHh
Confidence            66666666666666665543  1222332  222334556577788888999888875

>PRK05951 ubiA prenyltransferase; Reviewed

Probab=100.00  E-value=3.7e-32  Score=266.42  Aligned_cols=268  Identities=15%  Similarity=0.241  Sum_probs=199.7

Q ss_pred             HHHHHHHhhhccchHHHHHHHHHHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccCC-----C
Q 015791          110 KKLHALYVFTRPFAMIGTIVGITSIAILPLQSFADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADVEIDKVNK-----P  184 (400)
Q Consensus       110 ~~l~~y~~l~Rp~~~~~~~l~~l~g~~lA~~~~~~~~~~~l~~~ll~ll~~~l~~~a~~~iNd~~D~e~D~ink-----p  184 (400)
                      ++++.|++.+||+++..++.++++|.++|.....++++..   +++++++.+++++++|.+|||+|+|.|+.++     |
T Consensus         2 ~~~~~~~~~~Rp~tl~~s~~~v~lG~a~a~~~~~~f~~~~---~ll~~l~~~l~~~~~n~~Ndy~D~~~g~D~~~rt~~~   78 (296)
T PRK05951          2 QNAKLFFIFTRPWSFVMTAIVAFFSIAYGYYLFRSFDPLL---GALMLLGYFLLHASLNVFNDYKDYVLDCDHHETTGYR   78 (296)
T ss_pred             ccHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcCCcCHHH---HHHHHHHHHHHHHHHHHHHhHHHHhcCCccccccCCC
Confidence            4688999999999999999999999999975445677643   5677899999999999999999966555444     7


Q ss_pred             CCCcccCcCCHHHHHHHHHHHHHHHHHHHH----HhchhHHHHHHHHHHHHHhhccCCccccccccCCCcchHHHHHHHH
Q 015791          185 DLPLASGDLSMGTGLAITLTLSLTSLAIAL----SLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFG  260 (400)
Q Consensus       185 ~RPl~sG~is~~~a~~~~~~l~~lgl~l~~----~lg~~~l~~~l~~~~~l~~~Ys~~~pplrlKr~~~~g~l~i~~~~g  260 (400)
                      +||+++|++|+++++....++..+++.++.    ..+++.+.++ +++++.++.||  .||+++|++++ |++.++..+|
T Consensus        79 ~r~l~~G~is~~~~~~~~~~~~~ia~~~g~~l~~~~~~~~l~l~-~~~~~~~~~Yt--~~P~~lky~gl-Ge~~v~~~~g  154 (296)
T PRK05951         79 QHPIQAGIMTLGHLRVLGIALGAIALQLGWSLVLDRGIGAVTLA-LLGVFLWTCYM--GPPFFLKYRWL-GEHLVFYAWS  154 (296)
T ss_pred             CCccccCCcCHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHH-HHHHHHHHHHc--CCCcccCCCCc-hHHHHHHHHH
Confidence            899999999999999988887666654432    3465555555 46888999999  58999998875 9999988888


Q ss_pred             HHHHHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHHHHHHhhcCCchhhHhcCCccchhhhchhhHHHHHHHHHHHH
Q 015791          261 LVYQFSFFIHFQKYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFA  340 (400)
Q Consensus       261 ~~~~~G~~~~~~~~v~g~~~~~~~~l~~~~~~~~~~~~~~~ii~di~D~egD~~~GirTlpV~lG~k~a~~l~~~l~~~a  340 (400)
                      ..+++|.+...     ++..  +...+.....+.+++....+.||+||+|+|++.|+||+|+++|+|++ ++...+...+
T Consensus       155 ~~~vlg~~~~~-----~~~~--~~~~~~~sl~~~l~~~~il~~n~~~D~e~D~~~G~~Tlav~lG~~~a-~~~~~~~~~~  226 (296)
T PRK05951        155 HMLVMGLIYVW-----LGNL--SSPNLLAGVPLGLLMALVLLSNNLRDIEDDERKGIPTLAVIFGRRGA-ALYIFALLSP  226 (296)
T ss_pred             HHHHHHHHHHH-----hCcc--cHHHHHHHHHHHHHHHHHHHHCCCccchhHHHCCCeeeeeeEcHhhH-HHHHHHHHHH
Confidence            88777765431     2222  22233445566667777889999999999999999999999999999 6666666777


Q ss_pred             HHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHccCCChHHHHHHHHH
Q 015791          341 YGVSVIVGASSSFQLVKLVSIIGHSTLAFLLWLRAQTVDLSNNASTYSFYMF  392 (400)
Q Consensus       341 y~~~~~~g~~~~~~~~~~~~~~g~~~l~~~l~~~~~~~d~~~~~~~~~f~~~  392 (400)
                      |+..+........+++.+++.+++......+.++.+..|.++.+.|..+++.
T Consensus       227 ~~~~~~~~~~g~~~~~~l~~ll~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~  278 (296)
T PRK05951        227 YVILQILLIAILTPLISLWALLSLLVAYALCLWQLRKFPPDPDEATVQLFML  278 (296)
T ss_pred             HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhCcccccHHHHHHHHH
Confidence            7766554444434444455556655555555566666676666666665554

>PRK12392 bacteriochlorophyll c synthase; Provisional

Probab=100.00  E-value=3.3e-32  Score=269.68  Aligned_cols=256  Identities=18%  Similarity=0.281  Sum_probs=179.9

Q ss_pred             HHHHHHHHHhhhccchHHHHHHHHHHHHHHhcccC-CCCChHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccCCCCC
Q 015791          108 LLKKLHALYVFTRPFAMIGTIVGITSIAILPLQSF-ADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADVEIDKVNKPDL  186 (400)
Q Consensus       108 ~~~~l~~y~~l~Rp~~~~~~~l~~l~g~~lA~~~~-~~~~~~~l~~~ll~ll~~~l~~~a~~~iNd~~D~e~D~inkp~R  186 (400)
                      +.+++++|++++||++++ ..++.+.|.++|.+.. +......+ .+...++...+...++|++|||+|+|+|++|+|.|
T Consensus         8 ~~~~~k~~l~L~kP~t~l-~~~p~~~g~~lA~g~~~~~~~~~~l-~l~~~~~~~~L~~~a~~~iND~~D~~~D~~n~rtR   85 (331)
T PRK12392          8 FVDKIRAHLELLDPVTWI-SVFPCLAGGVMASGAMQPTLHDYLL-LLALFLMYGPLGTGFSQSVNDYFDLELDRVNEPTR   85 (331)
T ss_pred             hhHHHHHHHHHHCHHHHH-HHHHHHHHHHHHcCCCCCChhHHHH-HHHHHHHHHHHHHHHHhHHhcceeecccccCCCCC
Confidence            567899999999999888 5666777777875321 22221110 12223344455667889999999999999999999


Q ss_pred             CcccCcCCHHHHHHHHHHHHHHHHHHHHHhch-------hHHHHHHHHHHHHHhhccCCccccccccCCCcchHHHHHHH
Q 015791          187 PLASGDLSMGTGLAITLTLSLTSLAIALSLQS-------PPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVF  259 (400)
Q Consensus       187 Pl~sG~is~~~a~~~~~~l~~lgl~l~~~lg~-------~~l~~~l~~~~~l~~~Ys~~~pplrlKr~~~~g~l~i~~~~  259 (400)
                      |+++|++|+++++.+.+++.++++.+++.++.       +.+++..+++++++++||.  ||+++||.++.++..++..+
T Consensus        86 pl~~G~is~~~al~~~~~l~~la~~lg~~L~~~~~~~~~~~il~~~~~~l~l~~~YS~--~P~~lKr~~~~g~~~vGl~~  163 (331)
T PRK12392         86 PIPSGRLSEKEALWNSIIVLLLAIGLGVWLGLHIGGERGMVIISSILAGLFVAYIYSA--PPLKLKKNILTSAPAVGFSY  163 (331)
T ss_pred             CCCcCCcCHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHhhhhcC--CchhhhccchhHHHHHHHHH
Confidence            99999999999999999999888877776542       2222222357788999994  89999999988888777666


Q ss_pred             HHHHHHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHHHHHHhhcCCchhhHhcCCccchhhhchhhHHHHHHHHHHH
Q 015791          260 GLVYQFSFFIHFQKYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFF  339 (400)
Q Consensus       260 g~~~~~G~~~~~~~~v~g~~~~~~~~l~~~~~~~~~~~~~~~ii~di~D~egD~~~GirTlpV~lG~k~a~~l~~~l~~~  339 (400)
                      +....++.+.     ..+.   .+...++..++..+++.+++++||++|+|+|++.|+||+|+++|++++.+++..+..+
T Consensus       164 ~~~~~~~~~a-----~~g~---~~~~~~~l~~~~~l~~~~~~~i~d~~D~egD~~~G~kTlpV~~G~~~a~~i~~~~~~~  235 (331)
T PRK12392        164 GFITFLSANA-----LFSD---IRPEVVWLAGLNFFMAIALIIMNDFKSVEGDKEGGLKSLTVMIGAKNTFLVSFIIIDL  235 (331)
T ss_pred             HHHHHHHHHH-----HhcC---CCHHHHHHHHHHHHHHHHHHHHHcccchhhHHHcCCeeeEeEEcHhhHHHHHHHHHHH
Confidence            6544433221     2232   2223344455666788999999999999999999999999999999998887666545


Q ss_pred             HHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHc
Q 015791          340 AYGVSVIVGASSSFQLVKLVSIIGHSTLAFLLWLRAQTV  378 (400)
Q Consensus       340 ay~~~~~~g~~~~~~~~~~~~~~g~~~l~~~l~~~~~~~  378 (400)
                      ..+..+..+.....++.   +....++++..+++|.+..
T Consensus       236 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~q~~l~  271 (331)
T PRK12392        236 VFAVFAWLAWSWGFTVL---MYFILVGLVLNIVIQIQLY  271 (331)
T ss_pred             HHHHHHHHHHHhcccHH---HHHHHHHHHHHHHHHHHHH
Confidence            55555555555555433   2233334444555565543

>PRK12878 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed

Probab=100.00  E-value=8.3e-32  Score=265.60  Aligned_cols=267  Identities=16%  Similarity=0.146  Sum_probs=197.3

Q ss_pred             hhHHHHHHHHHHHhhh---ccchHHHHHHHHHHHHHHhcccC---CCCChHHHHHHHHHHHHHHHHHHHHhhhhhccccc
Q 015791          104 FWDVLLKKLHALYVFT---RPFAMIGTIVGITSIAILPLQSF---ADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADVE  177 (400)
Q Consensus       104 ~~~~~~~~l~~y~~l~---Rp~~~~~~~l~~l~g~~lA~~~~---~~~~~~~l~~~ll~ll~~~l~~~a~~~iNd~~D~e  177 (400)
                      +.+.++.++++|++++   ||+......++++.|.++|....   ...++.   .+++++++.+++++++|++|||+|+|
T Consensus        22 ~~~~~~~~~~~y~~L~R~~kP~~~~l~~~p~~~G~~lA~~~~~~~~~~~~~---~~~l~~l~~~l~~~a~~~~Nd~~Dr~   98 (314)
T PRK12878         22 VDRRLPPWLRPYAQLARWDRPIGWWLLLWPCWWSAALAAGAAADLGLLLLW---HLFLFFVGAIAMRGAGCTYNDIVDRD   98 (314)
T ss_pred             hhhhcchhHHHHHHHHccccchhhHHHHHHHHHHHHHhcccccCCCCCCHH---HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            3344778999999999   88888888899999999985431   123332   24677889999999999999999999


Q ss_pred             ccccCC--CCCCcccCcCCHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHhhccCCccccccccCCCcchHHH
Q 015791          178 IDKVNK--PDLPLASGDLSMGTGLAITLTLSLTSLAIALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCM  255 (400)
Q Consensus       178 ~D~ink--p~RPl~sG~is~~~a~~~~~~l~~lgl~l~~~lg~~~l~~~l~~~~~l~~~Ys~~~pplrlKr~~~~g~l~i  255 (400)
                      +|+.++  ++||+++|++|+++++.+..++.++|+.+.+..|++.+.+++ +++++.+.|+.      .||++.++++..
T Consensus        99 iD~~~~Rt~~RPl~sG~is~~~a~~~~~~~~~~g~~l~~~~~~~~~~l~~-~~~~~~~~Y~~------~KR~t~~~~~~~  171 (314)
T PRK12878         99 IDAKVARTRSRPLPSGQVSRKQAKVFMVLQALVGLAVLLQFNWFAIALGI-ASLAIVAAYPF------MKRITWWPQFFL  171 (314)
T ss_pred             cccCCCCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHHH------HHhcCCcchHHH
Confidence            998765  489999999999999999999999999998888987777765 56777999985      799888888766


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHHHHHHhhcCCchhhHhcCCccchhhhchhhHHHHHHH
Q 015791          256 VTVFGLVYQFSFFIHFQKYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVY  335 (400)
Q Consensus       256 ~~~~g~~~~~G~~~~~~~~v~g~~~~~~~~l~~~~~~~~~~~~~~~ii~di~D~egD~~~GirTlpV~lG~k~a~~l~~~  335 (400)
                      +...++...+|++..     .| ...+  ..+.+.+...+|+...+.+++++|+|+|+++|+||+||++|++++.++...
T Consensus       172 Gl~~~~~~l~g~~a~-----~g-~~~~--~~~~l~~~~~~w~~~~~~~~a~~D~e~D~~aGi~slpv~~G~~~~~~~~~~  243 (314)
T PRK12878        172 GLAFSWGALMGWAAH-----FG-SLSL--AAVLLYAGSIAWTIGYDTIYAHQDKEDDALIGVKSTARLFGDHTKTWLVLF  243 (314)
T ss_pred             HHHHHHHHHHHHHHH-----hC-CCch--HHHHHHHHHHHHHHHHHHHHHhhhHhhHHHcCCcccchHhchhhHHHHHHH
Confidence            655555444554321     23 2222  223334455667888999999999999999999999999999999887644


Q ss_pred             HHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHccCCChHHHHHHHHH
Q 015791          336 ALFFAYGVSVIVGASSSFQLVKLVSIIGHSTLAFLLWLRAQTVDLSNNASTYSFYMF  392 (400)
Q Consensus       336 l~~~ay~~~~~~g~~~~~~~~~~~~~~g~~~l~~~l~~~~~~~d~~~~~~~~~f~~~  392 (400)
                      ..... ....+.+.....++.++   ++.......+.++..++|.++++.|+++|+.
T Consensus       244 ~~~~~-~~~~l~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~~~~~~~F~~  296 (314)
T PRK12878        244 YGLAV-LLMGLAFWLAGVPLLAL---LGLLAAAAHLAWQIARLDIDDPDQCLRLFKS  296 (314)
T ss_pred             HHHHH-HHHHHHHHHhcCcHHHH---HHHHHHHHHHHHHHHHcccCChHHHHHHHHH
Confidence            43333 33333333334444332   3333444557788888888888888876654

>TIGR02056 ChlG chlorophyll synthase, ChlG

Probab=100.00  E-value=5.4e-32  Score=266.36  Aligned_cols=225  Identities=21%  Similarity=0.301  Sum_probs=173.5

Q ss_pred             HHHHHHHHHHhhhccchHHHHHHHHHHHHHHhcccCCCCChHH---HHHHHHHHHHHHHHHHHHhhhhhcccccccccCC
Q 015791          107 VLLKKLHALYVFTRPFAMIGTIVGITSIAILPLQSFADLTPKY---FMEFLKALLSAVLMNNYVGTVNQVADVEIDKVNK  183 (400)
Q Consensus       107 ~~~~~l~~y~~l~Rp~~~~~~~l~~l~g~~lA~~~~~~~~~~~---l~~~ll~ll~~~l~~~a~~~iNd~~D~e~D~ink  183 (400)
                      ...+++++|++++||+++..++++++.|.+.+.    .+++..   +..++..+++..++++++|.+|||+|+|+|+.|+
T Consensus        11 ~~~~~~~~~~~l~RP~~~~~~~~~~~~G~~~~~----~~~~~~~~~~~~ll~~ll~~~l~~~~~n~~NDy~D~d~D~~~~   86 (306)
T TIGR02056        11 GETNIWKIRLQLMKPITWIPLIWGVVCGAAASG----NFHWSLEDVAKAALCMLLSGPCLTGYTQTINDFYDRDIDAINE   86 (306)
T ss_pred             cchhHHHHHHHHcChHhhHHHHHHHHHHHHHcC----CCCcchhhHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhccCC
Confidence            356778999999999999999999999988642    233321   1113445678899999999999999999999999


Q ss_pred             CCCCcccCcCCHHHHHHHHHHHHHHHHHHHHHhc-------hhHHHHHHHHHHHHHhhccCCccccccccCCCcchHHHH
Q 015791          184 PDLPLASGDLSMGTGLAITLTLSLTSLAIALSLQ-------SPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMV  256 (400)
Q Consensus       184 p~RPl~sG~is~~~a~~~~~~l~~lgl~l~~~lg-------~~~l~~~l~~~~~l~~~Ys~~~pplrlKr~~~~g~l~i~  256 (400)
                      |+||+++|++|+++++.+++++.++++.+++.+.       ++.+.+++ ++++++++||.  ||+++||++++|++.++
T Consensus        87 ~~Rpi~~G~is~~~a~~~~~~l~~~~~~lg~~l~~~~~~~~~~~~~l~~-~~~~~~~~Yt~--gP~~lk~~g~~G~i~vg  163 (306)
T TIGR02056        87 PYRPIPSGAISEPEVITQIVLLFIAGIAIAFILDLWAGHEFPNVFVLAL-FGSFIAFIYSA--PPLKLKQNGWLGNFALG  163 (306)
T ss_pred             CCCCCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHH-HHHHHHHHHcC--ChhhhhhcccHHHHHHH
Confidence            9999999999999999999888888877766542       34455554 57788999994  89999999988998877


Q ss_pred             HHHHHHHHHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHHHHHHhhcCCchhhHhcCCccchhhhchhhHHHHHHHH
Q 015791          257 TVFGLVYQFSFFIHFQKYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYA  336 (400)
Q Consensus       257 ~~~g~~~~~G~~~~~~~~v~g~~~~~~~~l~~~~~~~~~~~~~~~ii~di~D~egD~~~GirTlpV~lG~k~a~~l~~~l  336 (400)
                      ..++..+..+.+.     +.|. .  +...++..+..++++.++++.||++|+|+|++.|+||+||++|+|++.+++..+
T Consensus       164 ~~~~~~~~~~~~a-----~~g~-~--~~~~~l~~~~~~l~~~~i~~~n~~~D~e~D~~~G~~Tlpv~lG~~~a~~~~~~l  235 (306)
T TIGR02056       164 ASYIALPWWAGHA-----LFGE-L--NPDIAVLTLIYSIAGLGIAIVNDFKSVEGDRALGLQSLPVAFGIETAAWICVGA  235 (306)
T ss_pred             HHHHHHHHHHHHH-----HhCC-C--cHHHHHHHHHHHHHHHHHHHHHHccChHHHHHcCCcCcchhcChHHHHHHHHHH
Confidence            6666544443221     1232 2  223344455666788899999999999999999999999999999999988877


Q ss_pred             HHHHHHHHHH
Q 015791          337 LFFAYGVSVI  346 (400)
Q Consensus       337 ~~~ay~~~~~  346 (400)
                      +..++...+.
T Consensus       236 ~~~~~~~~~~  245 (306)
T TIGR02056       236 IDIFQGLIAA  245 (306)
T ss_pred             HHHHHHHHHH
Confidence            7666655443

This model represents the strictly cyanobacterial and plant-specific chlorophyll synthase ChlG. ChlG is the enzyme (esterase) which attaches the side chain moiety onto chlorophyllide a. Both geranylgeranyl and phytyl pyrophosphates are substrates to varying degrees in enzymes from different sources. Thus, ChlG may act as the final or penultimate step in chlorophyll biosynthesis (along with the geranylgeranyl reductase, ChlP).

>PRK12873 ubiA prenyltransferase; Reviewed

Probab=100.00  E-value=6.2e-32  Score=263.09  Aligned_cols=261  Identities=15%  Similarity=0.113  Sum_probs=194.0

Q ss_pred             HHHHHHHhhhccchHHHHHH---HHHHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccCC--C
Q 015791          110 KKLHALYVFTRPFAMIGTIV---GITSIAILPLQSFADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADVEIDKVNK--P  184 (400)
Q Consensus       110 ~~l~~y~~l~Rp~~~~~~~l---~~l~g~~lA~~~~~~~~~~~l~~~ll~ll~~~l~~~a~~~iNd~~D~e~D~ink--p  184 (400)
                      +++++|++++||+.+.++.+   +.+.|.+++....+  ++.   .+++++++..++++++|++||+.|+|+|+.|+  +
T Consensus         5 ~~~~~y~~L~R~~Kp~~~~ll~~p~~~g~~la~~~~~--~~~---~~~~~~~g~~l~~~a~~~~Nd~~D~~iD~~~~RT~   79 (294)
T PRK12873          5 IKLSPWFELLRWNKPTGRLILLIPAGWSLWLTPSAPP--SLL---LLLLIILGGLAVSGAGCIANDLWDRRIDRKVERTK   79 (294)
T ss_pred             HhHHHHHHHhCccccchHHHHHHHHHHHHHHccCCCC--CHH---HHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcCC
Confidence            46889999999998877755   34567666543222  222   24577899999999999999999999999876  4


Q ss_pred             CCCcccCcCCHHHHHHHHHHHHHHHHHHHHHh----chhHHHHHHHHHHHHHhhccCCccccccccCCCcchHHHHHHHH
Q 015791          185 DLPLASGDLSMGTGLAITLTLSLTSLAIALSL----QSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFG  260 (400)
Q Consensus       185 ~RPl~sG~is~~~a~~~~~~l~~lgl~l~~~l----g~~~l~~~l~~~~~l~~~Ys~~~pplrlKr~~~~g~l~i~~~~g  260 (400)
                      +||+++|++|+++|+.+++++.++++.+.+.+    |+.++.+++ ++++....||.      +||++.+++++.+...+
T Consensus        80 ~RPl~sG~is~~~A~~~~~~~~~~~~~~~~~l~~~~n~l~~~l~~-~~~~~~~~Y~~------~KR~t~~~~~vlg~~~a  152 (294)
T PRK12873         80 NRPLARGKISLKTAYSLLIVLLLLSLFVVLSLPQPSRNLCLSLAF-LALPPILIYPS------AKRWFAYPQAILALCWG  152 (294)
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHH-HHHHHHHHHHH------HHhccccchHHHHHHHH
Confidence            99999999999999999999999998887665    556666654 45667889985      79999999987776666


Q ss_pred             HHHHHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHHHHHHhhcCCchhhHhcCCccchhhhchhhHHHHHHHHHHHH
Q 015791          261 LVYQFSFFIHFQKYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFA  340 (400)
Q Consensus       261 ~~~~~G~~~~~~~~v~g~~~~~~~~l~~~~~~~~~~~~~~~ii~di~D~egD~~~GirTlpV~lG~k~a~~l~~~l~~~a  340 (400)
                      ..+.+|+.+     +.|. ..+....+++.+.+.+|+.+.+++++++|+|+|+++|++|+|+++|++.. .....+..+.
T Consensus       153 ~~~l~gw~A-----v~g~-~~~~~~~l~l~~~~~~W~~~~d~iyA~qD~edD~~~Gv~slpv~~G~~~~-~~~~~~~~~~  225 (294)
T PRK12873        153 FAVLIPWAA-----AEGS-LNGGWPLLFCWLATLLWTFGFDTVYAMADRRDDAKIGLNSSALSLGSNAL-KTVQICYFLT  225 (294)
T ss_pred             hHHHHHHHH-----HhCC-CchhHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHcCCcccchhcChhhH-HHHHHHHHHH
Confidence            555555422     2232 22222333434566778999999999999999999999999999997554 4555666666


Q ss_pred             HHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHccCCC--hHHHHHHHHH
Q 015791          341 YGVSVIVGASSSFQLVKLVSIIGHSTLAFLLWLRAQTVDLSN--NASTYSFYMF  392 (400)
Q Consensus       341 y~~~~~~g~~~~~~~~~~~~~~g~~~l~~~l~~~~~~~d~~~--~~~~~~f~~~  392 (400)
                      .++...++.....++   ++.++.++.+..+.+|++.+|.++  +++|-++|+.
T Consensus       226 ~~ll~~~g~~~~l~~---~y~~~~~~~~~~l~~~~~~~~~~~~~~~~c~~~F~~  276 (294)
T PRK12873        226 SIFLALAAFIAQVGF---IFWPFWLIASIGMQRDILKLFPEKQSIKTIGNHFSN  276 (294)
T ss_pred             HHHHHHHHHHhCCcH---HHHHHHHHHHHHHHHHHHHhCcCcccHHHHHHHHHh
Confidence            665666677666654   445566666778889999999887  4888665543

>TIGR01474 ubiA_proteo 4-hydroxybenzoate polyprenyl transferase, proteobacterial

Probab=100.00  E-value=2.1e-31  Score=259.31  Aligned_cols=258  Identities=17%  Similarity=0.184  Sum_probs=186.5

Q ss_pred             HHHHhhhccchHHHH---HHHHHHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccCC--CCCC
Q 015791          113 HALYVFTRPFAMIGT---IVGITSIAILPLQSFADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADVEIDKVNK--PDLP  187 (400)
Q Consensus       113 ~~y~~l~Rp~~~~~~---~l~~l~g~~lA~~~~~~~~~~~l~~~ll~ll~~~l~~~a~~~iNd~~D~e~D~ink--p~RP  187 (400)
                      ++|.|++|++++.+.   .++.+.|..+|....+..++..   +++.+++.+++++++|++|||+|+|+|+.|+  |+||
T Consensus         2 ~~y~~l~R~~kp~~~~l~~~~~~~g~~la~~~~~~~~~~~---~~~~~~~~~l~~~a~~~~Nd~~D~~iD~~~~Rt~~RP   78 (281)
T TIGR01474         2 LPYAKLMRADKPIGTLLLLWPCLWSLLLAAQAGGIPPLYL---LGLFTVGAILMRGAGCVINDIWDRDFDPQVERTKSRP   78 (281)
T ss_pred             hHHHHHHccccHHHHHHHHHHHHHHHHHHhcccCCCcHHH---HHHHHHHHHHHHHHHHHHHhHhhhcccccCCcccCCC
Confidence            568888888776555   4556778888743111112221   4566788899999999999999999998665  4899


Q ss_pred             cccCcCCHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHhhccCCccccccccCCCcchHHHHHHHHHHHHHHH
Q 015791          188 LASGDLSMGTGLAITLTLSLTSLAIALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQFSF  267 (400)
Q Consensus       188 l~sG~is~~~a~~~~~~l~~lgl~l~~~lg~~~l~~~l~~~~~l~~~Ys~~~pplrlKr~~~~g~l~i~~~~g~~~~~G~  267 (400)
                      +++|++|+++++.++.++.++|+.+++..|+.+..+++ +++++.+.||.      .||++.++++..+...+..+.+|+
T Consensus        79 l~sG~is~~~a~~~~~~~~~~~~~l~~~l~~~~~~l~~-~~~~~~~~Y~~------~Kr~~~~~~~~~g~~~~~~~~~g~  151 (281)
T TIGR01474        79 LASGAVSVRQAILFLLVQLLVALGVLLQLNPLTILLGV-ASLALVATYPF------MKRITYWPQLVLGLAFGWGALMGW  151 (281)
T ss_pred             CCCCCcCHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH-HHHHHHHHhch------hcccccccHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999889988877765 57777999985      899999999877766666555664


Q ss_pred             HHHHHHHhhcCCccchHHHHHHHHHHHHHHHHHHHHhhcCCchhhHhcCCccchhhhchhhHHHHHHHHHHHHHHHHHHH
Q 015791          268 FIHFQKYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYGVSVIV  347 (400)
Q Consensus       268 ~~~~~~~v~g~~~~~~~~l~~~~~~~~~~~~~~~ii~di~D~egD~~~GirTlpV~lG~k~a~~l~~~l~~~ay~~~~~~  347 (400)
                      ++.     .| ..  +...+++.....+|+.+.+++++++|+|+|+++|+||+|+++|++++.+.. .+..++.....+.
T Consensus       152 ~a~-----~g-~~--~~~~~ll~~~~~lw~~~~~~~~a~~D~e~D~~~G~~tlpv~~G~~~~~~~~-~~~~~~~~~~~~~  222 (281)
T TIGR01474       152 AAV-----TG-DL--STAAWVLYLANILWTLGYDTIYAMQDKEDDIKIGVKSTALRFGDNTKPWLG-GLYALMILLLALA  222 (281)
T ss_pred             HHH-----cC-CC--cHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHcCCCcccHHhhhhhHHHHH-HHHHHHHHHHHHH
Confidence            331     23 22  222333345556678899999999999999999999999999998875543 3333333333333


Q ss_pred             HHhhhhhhHHHHHHHHHHHHHHHHHHHHHHccCCChHHHHHHHHH
Q 015791          348 GASSSFQLVKLVSIIGHSTLAFLLWLRAQTVDLSNNASTYSFYMF  392 (400)
Q Consensus       348 g~~~~~~~~~~~~~~g~~~l~~~l~~~~~~~d~~~~~~~~~f~~~  392 (400)
                      +.....++   .+.++..+.+..+.++...+|.+|++.|+++|+.
T Consensus       223 ~~~~~~~~---~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~  264 (281)
T TIGR01474       223 GLIAGLGP---VYYLGLAAAALLLIRQIATLDIRDPENCLKLFKA  264 (281)
T ss_pred             HHHhCCcH---HHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            44333333   3344555667777788888888888877765543

A fairly deep split by both clustering (UPGMA) and phylogenetics (NJ tree) separates this group (mostly Proteobacterial and mitochondrial), with several characterized members, from another group (mostly archaeal and Gram-positive bacterial) lacking characterized members.

>PRK12869 ubiA protoheme IX farnesyltransferase; Reviewed

Probab=100.00  E-value=8.5e-31  Score=254.78  Aligned_cols=265  Identities=13%  Similarity=0.130  Sum_probs=184.0

Q ss_pred             HHHHHHhhhccchHHHHHHHHHHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccCC--CCCCc
Q 015791          111 KLHALYVFTRPFAMIGTIVGITSIAILPLQSFADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADVEIDKVNK--PDLPL  188 (400)
Q Consensus       111 ~l~~y~~l~Rp~~~~~~~l~~l~g~~lA~~~~~~~~~~~l~~~ll~ll~~~l~~~a~~~iNd~~D~e~D~ink--p~RPl  188 (400)
                      ++++|++++||++.....++++.|.++|.+.  ..++..   +++.+++.+++++++|++|||+|+|+|++|+  |+||+
T Consensus         1 ~~~~~~~l~rp~~~~~~~~~~~~g~~la~~~--~~~~~~---~~l~~~~~~l~~~a~~~~Nd~~D~~iD~~~~Rt~~RPl   75 (279)
T PRK12869          1 KIKAYLKLLKPRVIWLLDLAAVAGYFLAAKH--GVSWLP---LIPLLIGGTLASGGSAAFNHGIERDIDKVMSRTSKRPT   75 (279)
T ss_pred             CHHHHHHHhHHHHHHHHHHHHHHHHHHhccC--CCCHHH---HHHHHHHHHHHHHHHHHHhchHhcCCCCCCCCCCCCCc
Confidence            4689999999999999999999999998543  233322   4567788999999999999999999999987  69999


Q ss_pred             ccCcCCHHHHHHHHHHHHHHHHHHHHH-hchhHHHHHHHHHHHHHhhccCCccccccccCCCcchHHHHHHHHHHHHHHH
Q 015791          189 ASGDLSMGTGLAITLTLSLTSLAIALS-LQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQFSF  267 (400)
Q Consensus       189 ~sG~is~~~a~~~~~~l~~lgl~l~~~-lg~~~l~~~l~~~~~l~~~Ys~~~pplrlKr~~~~g~l~i~~~~g~~~~~G~  267 (400)
                      ++|++|+++|..+++++.++|+.++.. +|+.+.....+..++..+.||.     ++||++.. +..+++..|...++|.
T Consensus        76 ~sG~is~~~a~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~Yt~-----~lKr~~~~-~~~v~~~~g~~~~l~g  149 (279)
T PRK12869         76 PVGLVNRKEALAVGSALSALGTALGFLLLGPLTALFIALGWFFYAVVYTI-----WLKPRTWL-NIVIGGFAGNAAALAG  149 (279)
T ss_pred             CCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCc-----ccccCChH-HHHHHHHHHHHHHHHH
Confidence            999999999999999999999988877 7876543333345567889985     38999985 6667766666655554


Q ss_pred             HHHHHHHhhcCCccchHHHHHHHHHHHHHHHHHHHHhhcCCchhhHhcCCccchhhhchhhHHHHHHHHHHHHHHHHHHH
Q 015791          268 FIHFQKYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYGVSVIV  347 (400)
Q Consensus       268 ~~~~~~~v~g~~~~~~~~l~~~~~~~~~~~~~~~ii~di~D~egD~~~GirTlpV~lG~k~a~~l~~~l~~~ay~~~~~~  347 (400)
                      +...     .+..  +...++..+.+.+|+.+.....+++|+|+|+++|+||+|+++|+|++.+....+..+........
T Consensus       150 ~~a~-----~g~~--~~~~~ll~~~~~~w~~~~~~~l~~~d~edd~~~G~~tlpv~~G~~~a~~~~~~~~~~~~~~~~~~  222 (279)
T PRK12869        150 YASG-----TGSL--DLEAVLLSFLIYLWTPGHIWSLALKYREDYRRAGVPMLPAVVGEKTSVRAISISNALMIPYILLL  222 (279)
T ss_pred             HHHH-----hCCC--CHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHcCCeecceeecHHHHHHHHHHHHHHHHHHHHHH
Confidence            4321     2222  22233444455566666666667899999999999999999999999876655544333333322


Q ss_pred             HHhhhhhhHHHHHHHHHH-HHHHHHHHHHHHccCCChHHHH-HHHHHHHHHh
Q 015791          348 GASSSFQLVKLVSIIGHS-TLAFLLWLRAQTVDLSNNASTY-SFYMFIWKAI  397 (400)
Q Consensus       348 g~~~~~~~~~~~~~~g~~-~l~~~l~~~~~~~d~~~~~~~~-~f~~~i~~l~  397 (400)
                      +. ...++   .+.++.. ..+..+..+.+.++.++++.|+ .|...+|.+.
T Consensus       223 ~~-~~~g~---~y~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~s~~~l~  270 (279)
T PRK12869        223 YL-YYIGL---IGLILVAILSAALMATSIRALLNPTKEEAWKMFKASSPYLA  270 (279)
T ss_pred             HH-hhccH---HHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHH
Confidence            22 23333   3333332 2333444555666655555554 4555566553

>PRK12883 ubiA prenyltransferase UbiA-like protein; Reviewed

Probab=100.00  E-value=5.8e-31  Score=255.63  Aligned_cols=205  Identities=25%  Similarity=0.333  Sum_probs=162.0

Q ss_pred             HHHHHHhhhccchHHHHHHHHHHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccCCCCCCccc
Q 015791          111 KLHALYVFTRPFAMIGTIVGITSIAILPLQSFADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADVEIDKVNKPDLPLAS  190 (400)
Q Consensus       111 ~l~~y~~l~Rp~~~~~~~l~~l~g~~lA~~~~~~~~~~~l~~~ll~ll~~~l~~~a~~~iNd~~D~e~D~inkp~RPl~s  190 (400)
                      .+++|++++||+++..+.++.+.|.+++.+..++  +.   ..++++++.++.++++|++||++|+|+|++|+|+||+++
T Consensus         2 ~l~~~~~l~Rp~~~~~~~~~~~~G~~la~~~~~~--~~---~~~l~~~~~~~~~~a~~~~Nd~~D~~~D~~n~~~Rpl~s   76 (277)
T PRK12883          2 ELKAFIEITRPHNCILAGIVGILGSLVALGGIPP--IK---TLILIFLVVYLGCSGGNTINDYFDYEIDKINRPNRPLPR   76 (277)
T ss_pred             CHHHHHHHHhhhHHHHHHHHHHHHHHHHcCCCCc--HH---HHHHHHHHHHHHHHHHhHHHhhhhHhccccCCCCCCCCC
Confidence            3678999999999999999899999888543221  21   134566788899999999999999999999999999999


Q ss_pred             CcCCHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHhhccCCccccccccCCCcchHHHHHHHHHHHHHHHHHH
Q 015791          191 GDLSMGTGLAITLTLSLTSLAIALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQFSFFIH  270 (400)
Q Consensus       191 G~is~~~a~~~~~~l~~lgl~l~~~lg~~~l~~~l~~~~~l~~~Ys~~~pplrlKr~~~~g~l~i~~~~g~~~~~G~~~~  270 (400)
                      |++++++++.++.++.++|+.+++.+|++++.+++ ++.+++++|+.     ++|+++.++|+.++...|..+..|... 
T Consensus        77 G~is~~~a~~~~~~l~~~g~~l~~~~~~~~~~~~~-~~~~~~~~Y~~-----~~k~~~~lg~~~vg~~~g~~~~~g~~a-  149 (277)
T PRK12883         77 GAMSRKAALYYSLLLFAVGLALAYLINIEAFLFAL-GAYVLMFLYAW-----KLKPLPFIGNVVVALLTGATPIYGAIA-  149 (277)
T ss_pred             CccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhh-----cccCCcchhhHHHHHHHHHHHHHHHHH-
Confidence            99999999999999999999999889988877665 46678999996     478988889999988887665555432 


Q ss_pred             HHHHhhcCCccchHHHHHHHHHHHHHHHHHHHHhhcCCchhhHhcCCccchhhhchhhHHHHHHHH
Q 015791          271 FQKYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYA  336 (400)
Q Consensus       271 ~~~~v~g~~~~~~~~l~~~~~~~~~~~~~~~ii~di~D~egD~~~GirTlpV~lG~k~a~~l~~~l  336 (400)
                          + +. ..+  ..+. ..+..++..++++.||++|+|+|+++|+||+|+++|+|++.++...+
T Consensus       150 ----~-~~-~~~--~~~~-~~~~fl~~~~~~~~~~~~D~e~D~~~G~~Tlpv~~G~~~a~~~~~~~  206 (277)
T PRK12883        150 ----V-GR-IGL--AGYL-AICAFLVNVAREIMKDIEDIEGDKAKGAKTLPIIIGKKRAAYIGAIF  206 (277)
T ss_pred             ----h-cc-ccH--HHHH-HHHHHHHHHHHHHHhhhhhhccHHHcCCcCcChHhcHHHHHHHHHHH
Confidence                1 21 111  1111 12233445678899999999999999999999999999998865444

>PRK06080 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Validated

Probab=100.00  E-value=1.4e-30  Score=254.75  Aligned_cols=232  Identities=18%  Similarity=0.186  Sum_probs=181.5

Q ss_pred             HHHHHHhhhccchHHHHHHHHHHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhcccc--cccc--cCCCCC
Q 015791          111 KLHALYVFTRPFAMIGTIVGITSIAILPLQSFADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADV--EIDK--VNKPDL  186 (400)
Q Consensus       111 ~l~~y~~l~Rp~~~~~~~l~~l~g~~lA~~~~~~~~~~~l~~~ll~ll~~~l~~~a~~~iNd~~D~--e~D~--inkp~R  186 (400)
                      .+++|++++||+++..+++++++|.++|... ..+++..   +++++++.++++.++|.+|||+|+  ++|+  .++|+|
T Consensus         2 ~~~~~~~~~Rp~~~~~~~~p~l~G~~~a~~~-~~~~~~~---~ll~~l~~~l~~~~~n~~Ndy~D~~~g~D~~~~~~~~r   77 (293)
T PRK06080          2 TFKAWLELARPKTLPAAFAPVLVGTALAYWL-GSFHPLL---ALLALLAALLLQIATNLANDYGDYVKGTDTEDRVGPLR   77 (293)
T ss_pred             CHHHHHHHhhHHHHHHHHHHHHHHHHHHHHc-CCccHHH---HHHHHHHHHHHHHHHHHHHhHHHhccCCCcccccCCcc
Confidence            3678999999999999999999999998532 3455532   567788999999999999999999  4675  456899


Q ss_pred             CcccCcCCHHHHHHHHHHHHHHHHHHHHH----hchhHHHHHHHHHHHHHhhccCCccccccccCCCcchHHHHHHHHHH
Q 015791          187 PLASGDLSMGTGLAITLTLSLTSLAIALS----LQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLV  262 (400)
Q Consensus       187 Pl~sG~is~~~a~~~~~~l~~lgl~l~~~----lg~~~l~~~l~~~~~l~~~Ys~~~pplrlKr~~~~g~l~i~~~~g~~  262 (400)
                      |+++|++|+++++.++.++.++++.++..    .+++.+.+++ ++++++++||  .||.|+|++++ ||+.++..+|..
T Consensus        78 ~l~~G~is~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~-~~~~~~~~Ys--~~p~~~~~~gl-ge~~~~~~~G~~  153 (293)
T PRK06080         78 AIGRGGISPKQVKRAAIAFFGLAALLGLYLVAVSGWWLLLLGL-LCIAAAILYT--GGPKPYGYTGL-GELFVGVFFGLV  153 (293)
T ss_pred             cccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHhhhhc--CCCCccCCCCc-HHHHHHHHHHHH
Confidence            99999999999998887777766555443    4655555554 5777889999  48888888875 999888888877


Q ss_pred             HHHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHHHHHHhhcCCchhhHhcCCccchhhhchhhHHHHHHHHHHHHHH
Q 015791          263 YQFSFFIHFQKYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYG  342 (400)
Q Consensus       263 ~~~G~~~~~~~~v~g~~~~~~~~l~~~~~~~~~~~~~~~ii~di~D~egD~~~GirTlpV~lG~k~a~~l~~~l~~~ay~  342 (400)
                      ++.|.+..     ..+.  .+...++..++..+++.++++.||++|+|+|++.|+||+|+++|+|++.+++..+..++|+
T Consensus       154 ~~~~~~~~-----~~~~--~~~~~~~~~l~~~l~~~~~~~~n~~~D~~~D~~~G~~Tl~v~lG~~~a~~~~~~l~~~~~~  226 (293)
T PRK06080        154 IVLGTYYL-----QAGT--VDSAVFLPALPCGLLIGAVLLANNIRDIETDRENGKNTLAVRLGDKNARRLHAALLALAYL  226 (293)
T ss_pred             HHHHHHHH-----hcCC--CCHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHcCCeeEEeeECcHhHHHHHHHHHHHHHH
Confidence            66654432     1121  2334455567777788899999999999999999999999999999999999999999998


Q ss_pred             HHHHHHHhhhhhhHH
Q 015791          343 VSVIVGASSSFQLVK  357 (400)
Q Consensus       343 ~~~~~g~~~~~~~~~  357 (400)
                      ..+........+++.
T Consensus       227 ~~~~~~~~~~~~~~~  241 (293)
T PRK06080        227 CIVLLALLGLASPWG  241 (293)
T ss_pred             HHHHHHHHhhhhHHH
Confidence            777665554455543

>PRK04375 protoheme IX farnesyltransferase; Provisional

Probab=100.00  E-value=1.7e-30  Score=254.61  Aligned_cols=268  Identities=15%  Similarity=0.108  Sum_probs=186.3

Q ss_pred             HHHHHHHHHhhhccchHHHHHHHHHHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccCC--CC
Q 015791          108 LLKKLHALYVFTRPFAMIGTIVGITSIAILPLQSFADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADVEIDKVNK--PD  185 (400)
Q Consensus       108 ~~~~l~~y~~l~Rp~~~~~~~l~~l~g~~lA~~~~~~~~~~~l~~~ll~ll~~~l~~~a~~~iNd~~D~e~D~ink--p~  185 (400)
                      .++++++|++++||++......+++.|.++|.+.  ..++.   .+++++++.+++++++|++|||+|+|+|++|+  |+
T Consensus         6 ~~~~~~~y~~L~rp~~~~~~~~~~~~G~~la~~~--~~~~~---~~~l~~l~~~l~~aa~~~iNd~~D~~iD~~~~Rt~~   80 (296)
T PRK04375          6 SRATLKDYLALTKPRVISLNLFTALGGMLLAPPG--VPPLL---LLLLTLLGIALVAGAAGALNNYIDRDIDAKMERTKN   80 (296)
T ss_pred             hhhhHHHHHHHhHHHHHHHHHHHHHHHHHHhcCC--CCCHH---HHHHHHHHHHHHHHHHHHHHhHHhhccCCCCCccCC
Confidence            3567999999999999999999999999998543  23432   24567889999999999999999999999987  69


Q ss_pred             CCcccCcCCHHHHHHHHHHHHHHHHHHHHH-hchhHHHHHHHHHHHHHhhccCCccccccccCCCcchHHHHHHHHHH-H
Q 015791          186 LPLASGDLSMGTGLAITLTLSLTSLAIALS-LQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLV-Y  263 (400)
Q Consensus       186 RPl~sG~is~~~a~~~~~~l~~lgl~l~~~-lg~~~l~~~l~~~~~l~~~Ys~~~pplrlKr~~~~g~l~i~~~~g~~-~  263 (400)
                      ||+++|++|++++..+++++.++|+.+++. .|+.+..++++..+.+.+.||.     ++||++. ++..++...+.. +
T Consensus        81 Rpl~sG~is~~~a~~~~~~l~~~g~~l~~~l~~~~~~~l~~~~~~~~~~~Ys~-----~lKr~~~-~~~~v~~~~g~~~~  154 (296)
T PRK04375         81 RPLVTGRISPREALIFGLVLGVLGFLLLGLFVNPLAAWLTLAGIFFYVVVYTL-----WLKRRTP-QNIVIGGAAGAMPP  154 (296)
T ss_pred             CCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcc-----chhcCCc-cchHHHHHHHHhHH
Confidence            999999999999999999999999888754 5766665554322335678985     4899996 677676665533 3


Q ss_pred             HHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHHHHHHhhcCCchhhHhcCCccchhhhchhhHHHHHHHHHHHHHHH
Q 015791          264 QFSFFIHFQKYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYGV  343 (400)
Q Consensus       264 ~~G~~~~~~~~v~g~~~~~~~~l~~~~~~~~~~~~~~~ii~di~D~egD~~~GirTlpV~lG~k~a~~l~~~l~~~ay~~  343 (400)
                      .+|++.      ..+..  +...+++.+...+|....+..++++|+|+|+++|+||+|+++|++++.++......+....
T Consensus       155 l~g~~a------~~g~~--~~~~~~l~~~~~lw~~~~~~~~~~~d~~D~~~~G~~tlpv~~G~~~~~~~~~~~~~~~~~~  226 (296)
T PRK04375        155 LIGWAA------VTGSL--SWEALILFLIIFLWTPPHFWALAIFRKDDYAAAGIPMLPVVKGIRVTKRQILLYTVLLVAV  226 (296)
T ss_pred             HHHHHH------hCCCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHcCCCccceeeCHHHHHHHHHHHHHHHHHH
Confidence            344332      12222  2223444556667788888888999999999999999999999998887655443333322


Q ss_pred             HHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHccCCChHHHH-HHHHHHHHH
Q 015791          344 SVIVGASSSFQLVKLVSIIGHSTLAFLLWLRAQTVDLSNNASTY-SFYMFIWKA  396 (400)
Q Consensus       344 ~~~~g~~~~~~~~~~~~~~g~~~l~~~l~~~~~~~d~~~~~~~~-~f~~~i~~l  396 (400)
                      .++.......++.+.+  .+....+.++.++.+..+.+|++.|+ .|+...|.+
T Consensus       227 ~~~~~~~~~~~~~y~~--~~~~~~~~~l~~~~~~~~~~~~~~~~~~F~~s~~~~  278 (296)
T PRK04375        227 SLLPVLLGMAGLLYLV--VALLLGAWFLYYAWRLYRKDDRKWARKLFRYSINYL  278 (296)
T ss_pred             HHHHHHHhccCHHHHH--HHHHHHHHHHHHHHHHhcCcCHHHHHHHHHHHHHHH
Confidence            2222222223332221  12333344555667777777766664 444445443

>PRK13595 ubiA prenyltransferase; Provisional

Probab=99.98  E-value=2.9e-30  Score=249.90  Aligned_cols=259  Identities=20%  Similarity=0.192  Sum_probs=184.9

Q ss_pred             HHHHHHHHHhhhccchHHHHHHHHHHHHHHhcccCCCCCh--HHHHHHHHHHHHHHHHHHHHhhhhhcccccccccCCCC
Q 015791          108 LLKKLHALYVFTRPFAMIGTIVGITSIAILPLQSFADLTP--KYFMEFLKALLSAVLMNNYVGTVNQVADVEIDKVNKPD  185 (400)
Q Consensus       108 ~~~~l~~y~~l~Rp~~~~~~~l~~l~g~~lA~~~~~~~~~--~~l~~~ll~ll~~~l~~~a~~~iNd~~D~e~D~inkp~  185 (400)
                      ....++.+++++||.+++.++.++++|...+..   .+++  ..   +++++...+..+.+.|++|||+|+|+|++|+|+
T Consensus         8 ~~~~l~~ll~~sRP~~wi~t~~~~~~G~~~~g~---~~~~~~~~---~~l~~~~~~p~n~~~~giND~fD~eiDa~Npr~   81 (292)
T PRK13595          8 ILLPLRRLLLISRPALWVNTVGTLVTGVWLTGH---LYTLDPGV---LPLLLYLTLPFNLLIYGLNDLADRETDAASPRK   81 (292)
T ss_pred             hhhHHHHHHHHhCcHHHHHHHHHHHHHHHHhcC---cccchhHH---HHHHHHHHHHHHHHHHHHHhhhhhhhhccCCCC
Confidence            456678899999999999999999999977743   2343  32   456677888999999999999999999999999


Q ss_pred             CCcccCcCCHHHHHHHHHHHHHH----HHHHHHHhchhHHHHHHHHHHHHHhhccCCccccccccCCCcchHHHHHHHHH
Q 015791          186 LPLASGDLSMGTGLAITLTLSLT----SLAIALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGL  261 (400)
Q Consensus       186 RPl~sG~is~~~a~~~~~~l~~l----gl~l~~~lg~~~l~~~l~~~~~l~~~Ys~~~pplrlKr~~~~g~l~i~~~~g~  261 (400)
                      ||+++|++|+++++.+..++.++    ++.+++..|+..+.+.+ ++.+++++||  .||+|+|++|++++++.. ..|.
T Consensus        82 ~~i~~G~is~~~~~~~~~~~~~~~~~~~l~la~~l~~~~~~l~~-v~~~l~~~YS--~pPlRlK~rp~l~~l~~~-~~g~  157 (292)
T PRK13595         82 GGWQGARLSPGEVRPLLRAVLLLNAPFLLYLALLLPPAATLLLL-LYAALFVGYS--LPPLRFKARPFLDGLSNA-AYAL  157 (292)
T ss_pred             CCCCcCccCHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHc--cCccchhcCcchhHHHHH-HHHH
Confidence            99999999999998865544433    55667778877766654 6778999999  599999999999988753 3343


Q ss_pred             HHHHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHHHHHHhhcCCchhhHhcCCccchhhhchhhHHHHHHHHHHHHH
Q 015791          262 VYQFSFFIHFQKYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAY  341 (400)
Q Consensus       262 ~~~~G~~~~~~~~v~g~~~~~~~~l~~~~~~~~~~~~~~~ii~di~D~egD~~~GirTlpV~lG~k~a~~l~~~l~~~ay  341 (400)
                        ++++..    .+.|...   .+..  .....+|..+++++++++|+|+||+.|+||+|+++|+|++.+++..+.+++-
T Consensus       158 --p~~~~~----~~~g~~~---~~~~--l~a~~~w~~g~dii~ai~DiegDr~~Gi~Slpv~lG~r~a~~~a~~~~~~a~  226 (292)
T PRK13595        158 --PLALPA----LALGAPV---PWPP--LLALMAWSVGKHAFDAAQDIPADRAAGTRTVATTLGVRGTALYALAWFLLAG  226 (292)
T ss_pred             --HHHHHH----HHcCCcc---hHHH--HHHHHHHHHHHHHHHhccChHhHHHcCCeechHHhCcHhHHHHHHHHHHHHH
Confidence              222211    1234321   1111  2344567789999999999999999999999999999999998877765544


Q ss_pred             HHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHh
Q 015791          342 GVSVIVGASSSFQLVKLVSIIGHSTLAFLLWLRAQTVDLSNNASTYSFYMFIWKAI  397 (400)
Q Consensus       342 ~~~~~~g~~~~~~~~~~~~~~g~~~l~~~l~~~~~~~d~~~~~~~~~f~~~i~~l~  397 (400)
                      +......  .+....  .. +...    ....+-+ .|.+..++-+.|-.|+|-.+
T Consensus       227 ~~~~~~~--~~~~~~--~~-~~~~----~~~~~~~-~~~~~~~~~~~~~~~~~~~~  272 (292)
T PRK13595        227 ALLWPVS--RLTALA--LW-LICG----GMALALW-RRPTPETAHRLYPLSIVTPW  272 (292)
T ss_pred             HHHHHhc--chHHHH--HH-HHHH----HHHHHHh-cCCCHHHHhccchHHHHHhH
Confidence            3332211  111111  11 1111    1112222 67777888889999998654

>PRK13387 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional

Probab=99.97  E-value=9.7e-30  Score=251.22  Aligned_cols=238  Identities=12%  Similarity=0.087  Sum_probs=182.9

Q ss_pred             HHHHHhhhccchHHHHHHHHHHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccCC----CCCC
Q 015791          112 LHALYVFTRPFAMIGTIVGITSIAILPLQSFADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADVEIDKVNK----PDLP  187 (400)
Q Consensus       112 l~~y~~l~Rp~~~~~~~l~~l~g~~lA~~~~~~~~~~~l~~~ll~ll~~~l~~~a~~~iNd~~D~e~D~ink----p~RP  187 (400)
                      ++.|++++||++...++++++.|.++|.....++++..   +++++++++++++++|.+|||+|.+.|..++    +.|+
T Consensus         3 ~~~~~~~~Rp~tl~~s~~pvllG~a~a~~~~~~~~~~~---~ll~ll~~~~~~~~~N~~NDy~D~~~g~D~~~~~~~~~~   79 (317)
T PRK13387          3 AKLFLKLVEIHTKIASFFPVILGTLFSLYVAKIFDWLL---FLAFMVAMLAFDIATTAINNYMDFKKALDTADYVGIGNG   79 (317)
T ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHHHHHhCCCccHHH---HHHHHHHHHHHHHHHHHHHhHHHHhcCCCcccccCCcch
Confidence            67899999999999999999999999965444677643   5677889999999999999999998766554    6899


Q ss_pred             cccCcCCHHHHHHHHHHHHHHHHH----HHHHhchhHHHHHHHHHHHHHhhccCCccccccccCCCcchHHHHHHHHHHH
Q 015791          188 LASGDLSMGTGLAITLTLSLTSLA----IALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVY  263 (400)
Q Consensus       188 l~sG~is~~~a~~~~~~l~~lgl~----l~~~lg~~~l~~~l~~~~~l~~~Ys~~~pplrlKr~~~~g~l~i~~~~g~~~  263 (400)
                      +++|.+++++++..+..+.+++.+    +.+..|+..+.+++ ++++.+++||  .||+++||++ +||+.++..+|+.+
T Consensus        80 i~~~~ls~~~v~~~~~~~~~ia~~~Gl~L~~~~g~~~l~igl-~g~~~~~~Yt--~gP~~l~y~g-LGe~~v~i~~G~~~  155 (317)
T PRK13387         80 IGQHGLKPRNVLTVILLMYVVAAILGVYLCMNTSWLLLVIGL-ICFAIGILYT--GGPLPLSRMP-LGEIFSGLTMGFGI  155 (317)
T ss_pred             hccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHH-HHHHHhhhhc--CCCcccccCc-cHHHHHHHHHHHHH
Confidence            999999999999888877766655    55667876666664 6888999999  5899999999 59999988889877


Q ss_pred             HHHHHHHHHHHhhcC--------Cc--cchH----HHHHHHHHHHHHHHHHHHHhhcCCchhhHhcCCccchhhhchhhH
Q 015791          264 QFSFFIHFQKYVLGR--------PV--VITR----PLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENV  329 (400)
Q Consensus       264 ~~G~~~~~~~~v~g~--------~~--~~~~----~l~~~~~~~~~~~~~~~ii~di~D~egD~~~GirTlpV~lG~k~a  329 (400)
                      ..|.+.. ++.....        ..  .++.    ..++..+.+.+.+..+++.||++|+|+|+++|+||+|+++|+|++
T Consensus       156 v~g~~yv-~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~slp~g~l~~~ill~Nn~~D~e~D~~~gk~TL~v~lG~~~a  234 (317)
T PRK13387        156 FLLAVYI-NTNTITIESLLFQGEMFTIQGNLIAIIAIGVISLPIIFTIANIMLANNLRDLDEDIKNHRYTLVYYIGREKG  234 (317)
T ss_pred             HHHHHHH-hcCCCchHHHHhcccchhhcchhHHHHHHHHHHHHHHHHHHHHHHhcCCccchhHHHcCCeeeeeeEcHHhH
Confidence            7765543 2110000        00  0000    011244555566777899999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhhhHH
Q 015791          330 LRLCVYALFFAYGVSVIVGASSSFQLVK  357 (400)
Q Consensus       330 ~~l~~~l~~~ay~~~~~~g~~~~~~~~~  357 (400)
                      .++..++..++|+..+........+++.
T Consensus       235 ~~l~~~l~~~a~l~~~~~v~~g~lp~~~  262 (317)
T PRK13387        235 VVLFAILFYASYLAIAVIVLMGYISPWA  262 (317)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence            9999999999998776554444345443

>TIGR01473 cyoE_ctaB protoheme IX farnesyltransferase

Probab=99.97  E-value=9.3e-30  Score=247.58  Aligned_cols=264  Identities=17%  Similarity=0.140  Sum_probs=181.7

Q ss_pred             HHHHhhhccchHHHHHHHHHHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccCC--CCCCccc
Q 015791          113 HALYVFTRPFAMIGTIVGITSIAILPLQSFADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADVEIDKVNK--PDLPLAS  190 (400)
Q Consensus       113 ~~y~~l~Rp~~~~~~~l~~l~g~~lA~~~~~~~~~~~l~~~ll~ll~~~l~~~a~~~iNd~~D~e~D~ink--p~RPl~s  190 (400)
                      ++|++++||+++..+.++++.|.++|.+.. +.++..   +++++++.+++++++|++|||+|+|+|++|+  |+||+++
T Consensus         1 ~~~~~l~rp~~~~~~~~~~~~g~~la~~~~-~~~~~~---~~l~~~~~~l~~~a~~~~Nd~~D~~iD~~~~Rt~~Rpl~s   76 (280)
T TIGR01473         1 KDYLQLTKPRIISLLLITAFAGMWLAPGGA-LVNPPL---LLLTLLGTTLAAASANAFNMYIDRDIDKKMKRTRNRPLVT   76 (280)
T ss_pred             CchHHHccHHHHHHHHHHHHHHHHHhCCCC-CCCHHH---HHHHHHHHHHHHHHHHHHHhhcccCcCCCCCCCCCCCCCC
Confidence            368999999999999999999999985432 234322   4567789999999999999999999999876  6999999


Q ss_pred             CcCCHHHHHHHHHHHHHHHHHH-HHHhchhHHHHHHHHHHH-HHhhccCCccccccccCCCcchHHHHHHHHHHHHHHHH
Q 015791          191 GDLSMGTGLAITLTLSLTSLAI-ALSLQSPPLIFGLIVWFL-LGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQFSFF  268 (400)
Q Consensus       191 G~is~~~a~~~~~~l~~lgl~l-~~~lg~~~l~~~l~~~~~-l~~~Ys~~~pplrlKr~~~~g~l~i~~~~g~~~~~G~~  268 (400)
                      |++|++++..+++++.++|+.+ ....|+....++++ +.+ .+++||..     +||++.. +..++...|...+++.+
T Consensus        77 G~is~~~a~~~~~~~~~~g~~il~~~~~~~~~~l~~~-~~~~~~~~Yt~~-----lKr~~~~-~~~v~~~~g~~~~l~g~  149 (280)
T TIGR01473        77 GRISPREALAFGLLLGVLGVAILAAFVNPLAALLGLF-GIFFYVIVYTIW-----LKRRTPQ-NTVIGGFAGAVPPLIGW  149 (280)
T ss_pred             CCcCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH-HHHHHHhhcChh-----hccCCch-hHHHHHHHHHHHHHHHH
Confidence            9999999999999999999884 44578776666543 443 47899942     7999886 55566666655554433


Q ss_pred             HHHHHHhhcCCccchHHHHHHHHHHHHHHHHHHHHhhcCCchhhHhcCCccchhhhchhhHHHHHHHHHHHHHHHHHHHH
Q 015791          269 IHFQKYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYGVSVIVG  348 (400)
Q Consensus       269 ~~~~~~v~g~~~~~~~~l~~~~~~~~~~~~~~~ii~di~D~egD~~~GirTlpV~lG~k~a~~l~~~l~~~ay~~~~~~g  348 (400)
                      ..     .++...+  ..+++...+.+|+.......+++|+|+|+++|+||+|+++|+|++.++.............+.+
T Consensus       150 ~a-----~~g~~~~--~~~~l~~~~~~w~~~~~~~~a~~~~~dd~~~G~~tl~v~~G~~~a~~~~~~~~~~~~~~~~~~~  222 (280)
T TIGR01473       150 AA-----VTGSISL--GAWLLFAIIFLWQPPHFWALALKYKDDYRAAGIPMLPVVKGERITKRQIALYTAALLPVSLLLA  222 (280)
T ss_pred             HH-----hcCCCCH--HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHCCCccCCcccCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            32     1222222  2333344555666666666678999999999999999999999887765544433333333333


Q ss_pred             HhhhhhhHHHHHHHHHHHHHHHHHHHHHHccCC-ChHHHH-HHHHHHHHH
Q 015791          349 ASSSFQLVKLVSIIGHSTLAFLLWLRAQTVDLS-NNASTY-SFYMFIWKA  396 (400)
Q Consensus       349 ~~~~~~~~~~~~~~g~~~l~~~l~~~~~~~d~~-~~~~~~-~f~~~i~~l  396 (400)
                      .....++.+.  .++..+.+.++.++.+..|.+ |++.++ .|+...+.+
T Consensus       223 ~~~~~~~~y~--~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~f~~s~~~~  270 (280)
T TIGR01473       223 FLGGTGWLYL--IVATLLGALFLYLAFKFYRDPTDRKKARKLFKFSLIYL  270 (280)
T ss_pred             HHhcccHHHH--HHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH
Confidence            3333343322  133444455666777777766 554444 455445544

This model describes protoheme IX farnesyltransferase, also called heme O synthase, an enzyme that creates an intermediate in the biosynthesis of heme A. Prior to the description of its enzymatic function, this protein was often called a cytochrome o ubiquinol oxidase assembly factor.

>PRK13362 protoheme IX farnesyltransferase; Provisional

Probab=99.97  E-value=1.2e-28  Score=242.29  Aligned_cols=208  Identities=13%  Similarity=0.154  Sum_probs=159.1

Q ss_pred             HHHHHHHHHhhhccchHHHHHHHHHHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccCC--CC
Q 015791          108 LLKKLHALYVFTRPFAMIGTIVGITSIAILPLQSFADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADVEIDKVNK--PD  185 (400)
Q Consensus       108 ~~~~l~~y~~l~Rp~~~~~~~l~~l~g~~lA~~~~~~~~~~~l~~~ll~ll~~~l~~~a~~~iNd~~D~e~D~ink--p~  185 (400)
                      .+.++++|++++||+.+....++++.|.++|...  +.++..   ++.++++..+.++++|++|||+|+|+|+.++  ++
T Consensus         9 ~~~~l~~~~~L~RP~~~~~~~~~~~~G~~la~~~--~~~~~~---~~~~~lg~~l~~aaa~~~Nd~~D~~iD~~~~Rt~~   83 (306)
T PRK13362          9 WEASLKDYIQVTKPGIIFGNVISVAGGFFLASKG--HVDPVL---MLAAVIGLSLVVASGCALNNCIDRDIDAKMQRTRN   83 (306)
T ss_pred             HHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHccC--CCCHHH---HHHHHHHHHHHHHHHHHHhChHHhCcCCCCCCCCC
Confidence            4567899999999999999999999999998433  234432   4456789999999999999999999998754  59


Q ss_pred             CCcccCcCCHHHHHHHHHHHHHHHHHHH-HHhchhHHHHHHHHHHHHHhhccCCccccccccCCCcchHHHHHHHHHHHH
Q 015791          186 LPLASGDLSMGTGLAITLTLSLTSLAIA-LSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQ  264 (400)
Q Consensus       186 RPl~sG~is~~~a~~~~~~l~~lgl~l~-~~lg~~~l~~~l~~~~~l~~~Ys~~~pplrlKr~~~~g~l~i~~~~g~~~~  264 (400)
                      ||+++|++|+++|+.+++++.++|+.+. +..|+....++.+..+++.++||.     ++||++..++++.+...+..+.
T Consensus        84 RPlpsG~is~~~A~~~~~~l~~~g~~ll~~~~n~~~~~l~~~~~~~~~~~Yt~-----~lKr~t~~~~~vgg~~ga~p~l  158 (306)
T PRK13362         84 RVTVTGEISLGEALGFGLALGVAGFGLLAAFTNPLAALFAAFGYVVYVGVYSL-----YLKRNSVYGTLVGSLSGAMPPV  158 (306)
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhH-----HHhccCcHhHHHHHHHHHHHHH
Confidence            9999999999999999999999998765 446776655543333446789984     3899999888755544444444


Q ss_pred             HHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHHHHHHhhcCCchhhHhcCCccchhhhchhhHHHHH
Q 015791          265 FSFFIHFQKYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLC  333 (400)
Q Consensus       265 ~G~~~~~~~~v~g~~~~~~~~l~~~~~~~~~~~~~~~ii~di~D~egD~~~GirTlpV~lG~k~a~~l~  333 (400)
                      +|+..      .++..  +...+++...+.+|+...+...+++|+|||+++|+||+|+++|+|++.+..
T Consensus       159 ~G~~a------~~g~~--~~~~~~l~~~~~~W~~~h~~~~ai~~~~Dy~~aG~~~lpv~~G~~~t~~~~  219 (306)
T PRK13362        159 VGYCA------VTGQF--DAGALILLLMFSLWQMPHSYAIAIFRFNDYAAAGIPVLPVARGIAKTKLHI  219 (306)
T ss_pred             HHHHH------HcCCC--cHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHCCCeeeceecChHHHHHHH
Confidence            55432      13322  223444566667788888888899999999999999999999999887643

>PLN02922 prenyltransferase

Probab=99.97  E-value=1.1e-27  Score=236.20  Aligned_cols=237  Identities=18%  Similarity=0.203  Sum_probs=178.6

Q ss_pred             HHHHHHHhhhccchHHHHHHHHHHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhccccc--ccccCCCCCC
Q 015791          110 KKLHALYVFTRPFAMIGTIVGITSIAILPLQSFADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADVE--IDKVNKPDLP  187 (400)
Q Consensus       110 ~~l~~y~~l~Rp~~~~~~~l~~l~g~~lA~~~~~~~~~~~l~~~ll~ll~~~l~~~a~~~iNd~~D~e--~D~inkp~RP  187 (400)
                      ++++.|++.+||+++..+++++++|.++|......+++..   ++++++++++++.++|.+|||+|.+  .|+.++..+.
T Consensus        13 ~~~~~w~~a~Rp~tl~~s~~pv~lG~a~A~~~~g~f~~~~---~ll~ll~~~l~q~~~N~~NDy~D~~~G~D~~~~~~~~   89 (315)
T PLN02922         13 SRATLWWRAIKLPMYSVALVPLTVGAAAAYLQTGLFDARR---YGTLLLSSVLVITWLNLSNDAYDADTGVDKNKKESVV   89 (315)
T ss_pred             cHHHHHHHHhCcchHHHHHHHHHHHHHHHHHcCCCccHHH---HHHHHHHHHHHHHHHHHHhhhhHhccCcCcccCCCCC
Confidence            5678899999999999999999999999975445677653   5678899999999999999999986  5775432222


Q ss_pred             cccCcCCHHHHHHHHHHHHHHHHHHHH---H--hchhHHHHHHHHHHHHHhhccCCccccccccCCCcchHHHHHHHHHH
Q 015791          188 LASGDLSMGTGLAITLTLSLTSLAIAL---S--LQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLV  262 (400)
Q Consensus       188 l~sG~is~~~a~~~~~~l~~lgl~l~~---~--lg~~~l~~~l~~~~~l~~~Ys~~~pplrlKr~~~~g~l~i~~~~g~~  262 (400)
                      -..|  ++++.+..++++.++++...+   .  .|++.+.++ +++++.+++||  .||+++|++++ |++.++..+|..
T Consensus        90 ~~~~--s~~~v~~~~~~~~~la~~g~~ll~~~~~~~~~l~iG-~~g~~~~~~Yt--~gP~pl~y~gL-GE~~v~i~fG~l  163 (315)
T PLN02922         90 NLVG--SRRGVLAAAIGCLALGAAGLVWASLVAGNIRVILLL-AAAILCGYVYQ--CPPFRLSYKGL-GEPLCFAAFGPL  163 (315)
T ss_pred             Cccc--CHHHHHHHHHHHHHHHHHHHHHHHHHccChHHHHHH-HHHHHHHHHHh--cCCcccccCcc-hHHHHHHHHHHH
Confidence            2234  899988877766665543221   2  245555555 46889999999  58999999997 999998888988


Q ss_pred             HHHHHHHHHHHHhhcC-Cc---cchHHHHHHHHHHHHHHHHHHHHhhcCCchhhHhcCCccchhhhchhhHHHHHHHHHH
Q 015791          263 YQFSFFIHFQKYVLGR-PV---VITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALF  338 (400)
Q Consensus       263 ~~~G~~~~~~~~v~g~-~~---~~~~~l~~~~~~~~~~~~~~~ii~di~D~egD~~~GirTlpV~lG~k~a~~l~~~l~~  338 (400)
                      ++.|.|.. ++...+. ..   ..+...++..+.+++++.++.+.||+||+|+|++.|+||+||++|+|++.++..++..
T Consensus       164 ~v~g~y~~-~~~~~~~~~~~~~~~~~~~~l~slp~gll~~~iL~~Nn~rD~e~D~~~Gk~TL~v~lG~~~a~~l~~~l~~  242 (315)
T PLN02922        164 ATTAFYLA-LASGAGGSEMAILPLTPTVLSASVLVGLTTTLILFCSHFHQIDGDRAVGKMSPLVRLGTEKGSRVVRWAVL  242 (315)
T ss_pred             HHHHHHHH-hcccccccccccccccHHHHHHHHHHHHHHHHHHHHccCcchhhHHHcCccceeeEEChHHHHHHHHHHHH
Confidence            77776653 2211111 00   1233345567777788888999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhhhhhH
Q 015791          339 FAYGVSVIVGASSSFQLV  356 (400)
Q Consensus       339 ~ay~~~~~~g~~~~~~~~  356 (400)
                      .+|+..+........+++
T Consensus       243 ~~y~~~i~~v~~~~~p~~  260 (315)
T PLN02922        243 LLYSLLAALGLLKALPLP  260 (315)
T ss_pred             HHHHHHHHHHHHhhhhHH
Confidence            999877766555444543

>PRK07419 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional

Probab=99.97  E-value=6e-28  Score=236.78  Aligned_cols=234  Identities=18%  Similarity=0.143  Sum_probs=181.9

Q ss_pred             HHHHHHHHhhhccchHHHHHHHHHHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhccccc--ccccCCCCC
Q 015791          109 LKKLHALYVFTRPFAMIGTIVGITSIAILPLQSFADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADVE--IDKVNKPDL  186 (400)
Q Consensus       109 ~~~l~~y~~l~Rp~~~~~~~l~~l~g~~lA~~~~~~~~~~~l~~~ll~ll~~~l~~~a~~~iNd~~D~e--~D~inkp~R  186 (400)
                      .++++.|++.+||+++..+++++++|.++|.....++++..   +++++++.+++++++|.+|||+|++  .|+. ++. 
T Consensus         9 ~~~~~~w~~a~RP~tl~asl~pv~lG~a~a~~~~~~f~~~~---~ll~ll~~~l~q~~~N~~NDy~D~~~G~D~~-~~~-   83 (304)
T PRK07419          9 PSRRKLWLAAIKPPMYSVAIMPILVGTAWALGETGVFRLDQ---FITFLLAAILILAWENLSNDVFDADTGIDKN-KFH-   83 (304)
T ss_pred             ccHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHcCCCccHHH---HHHHHHHHHHHHHHHHHHHHHHHHhccCCcc-ccc-
Confidence            45688899999999999999999999999965445677643   5678899999999999999999987  6773 222 


Q ss_pred             CcccCcCCHHHHHHHHHHHHHHHHH----HHHHhchhHHHHHHHHHHHHHhhccCCccccccccCCCcchHHHHHHHHHH
Q 015791          187 PLASGDLSMGTGLAITLTLSLTSLA----IALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLV  262 (400)
Q Consensus       187 Pl~sG~is~~~a~~~~~~l~~lgl~----l~~~lg~~~l~~~l~~~~~l~~~Ys~~~pplrlKr~~~~g~l~i~~~~g~~  262 (400)
                      ...++..++++....+.++.++++.    +.+..|++.+.+++ ++++.+++||  .||+++|++++ |++.++..+|++
T Consensus        84 ~~~~~~~~~~~v~~~~~~~~~~a~~~Gl~L~~~~g~~~l~ig~-~g~~~~~~YT--~gP~~l~y~gL-GE~~v~l~~G~l  159 (304)
T PRK07419         84 SVVNLTGNKSLVFWLANLFLLLGLLGILAIALQSDWTVLGLVL-LCCFLGYLYQ--GPPFRLGYQGL-GEPLCFLAFGPL  159 (304)
T ss_pred             CcccccCcHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHH-HHHHHhhecc--CCCcccCCCCc-hHHHHHHHHHHH
Confidence            2345555788888777766655544    44455765555554 6888999999  58999999996 999999999988


Q ss_pred             HHHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHHHHHHhhcCCchhhHhcCCccchhhhchhhHHHHHHHHHHHHHH
Q 015791          263 YQFSFFIHFQKYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYG  342 (400)
Q Consensus       263 ~~~G~~~~~~~~v~g~~~~~~~~l~~~~~~~~~~~~~~~ii~di~D~egD~~~GirTlpV~lG~k~a~~l~~~l~~~ay~  342 (400)
                      .+.|.+.. +    .+.  ++...+...+.+++.+..+...||+||+|+|++.|+||+||++|+|++.+++..+...+|+
T Consensus       160 ~v~g~~yv-~----t~~--~~~~~~~~sl~~gll~~~IL~~Nn~rD~e~D~~~Gk~TL~v~lG~~~a~~ly~~l~~~ay~  232 (304)
T PRK07419        160 AVAAALYS-Q----TPS--WSLIPLAASIILGLATSLILFCSHFHQVEDDLAAGKRSPIVRLGTKRGAQLLPWIVGLIYA  232 (304)
T ss_pred             HHHHHHHH-h----cCC--CCHHHHHHHHHHHHHHHHHHHHcCCcchhhHHHcCCcceeeeechHhHHHHHHHHHHHHHH
Confidence            88776653 2    222  2333455566677778888999999999999999999999999999999999999999998


Q ss_pred             HHHHHHHhhhhhhHHH
Q 015791          343 VSVIVGASSSFQLVKL  358 (400)
Q Consensus       343 ~~~~~g~~~~~~~~~~  358 (400)
                      ..+........+|+.+
T Consensus       233 ~~i~~v~~g~~p~~~L  248 (304)
T PRK07419        233 LELLPVLLGFWPWTTL  248 (304)
T ss_pred             HHHHHHHHhhhHHHHH
Confidence            8776555444555433

>TIGR00751 menA 1,4-dihydroxy-2-naphthoate octaprenyltransferase

Probab=99.97  E-value=5.6e-28  Score=235.19  Aligned_cols=224  Identities=15%  Similarity=0.088  Sum_probs=174.1

Q ss_pred             ccchHHHHHHHHHHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhccccc--ccccC--CCCCCcccCcCCH
Q 015791          120 RPFAMIGTIVGITSIAILPLQSFADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADVE--IDKVN--KPDLPLASGDLSM  195 (400)
Q Consensus       120 Rp~~~~~~~l~~l~g~~lA~~~~~~~~~~~l~~~ll~ll~~~l~~~a~~~iNd~~D~e--~D~in--kp~RPl~sG~is~  195 (400)
                      ||+++..+++++++|.++|.... .+++..   +++++++++++++++|.+|||+|.+  .|+.+  +|.|++++|.+++
T Consensus         1 Rp~tl~~s~~pv~lG~ala~~~~-~f~~~~---~ll~~~~~~~~q~~~N~~NDy~D~~~G~D~~~~~~~~r~i~~g~is~   76 (284)
T TIGR00751         1 RPKTLPLAIAPIVAGTALAAWLH-AFVWLV---ALLALATAVLLQILSNYANDYGDGIKGSDTDDRIGPLRGVQKGLITP   76 (284)
T ss_pred             CCchHHHHHHHHHHHHHHHHHcC-CccHHH---HHHHHHHHHHHHHHHHHHHhHHHHhcCCChhhccCCcchhcCCCCCH
Confidence            89999999999999999996543 677643   5678899999999999999999985  36543  4789999999999


Q ss_pred             HHHHHHHHHHHHHHHHH----HHHhch-----hH-HHHHHHHHHHHHhhccCCccccccccCCCcchHHHHHHHHHHHHH
Q 015791          196 GTGLAITLTLSLTSLAI----ALSLQS-----PP-LIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQF  265 (400)
Q Consensus       196 ~~a~~~~~~l~~lgl~l----~~~lg~-----~~-l~~~l~~~~~l~~~Ys~~~pplrlKr~~~~g~l~i~~~~g~~~~~  265 (400)
                      +++...++++++++..+    .+..++     ++ +.++ +++++.+++||  .||+++|++++ ||+.++..+|.+.+.
T Consensus        77 ~~v~~~~~~~~~~a~~~Gi~l~~~~~~~~~~~~~~l~lg-~~~~~~~~~Yt--~gP~~l~y~gL-GE~~v~i~~G~l~v~  152 (284)
T TIGR00751        77 REVKTALITSVALGALSGLVLALLAAPNLSDLFWFIALG-ALCIAAAITYT--VGSKPYGYAGL-GDISVLVFFGPLAVL  152 (284)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcccchhhhHHHHHHH-HHHHHHhHhhc--CCCCccccCch-HHHHHHHHHHHHHHH
Confidence            99998887777655444    344454     13 3444 46888899999  58999999996 999999999988887


Q ss_pred             HHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHHHHHHhhcCCchhhHhcCCccchhhhchhhHHHHHHHHHHHHHHHHH
Q 015791          266 SFFIHFQKYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYGVSV  345 (400)
Q Consensus       266 G~~~~~~~~v~g~~~~~~~~l~~~~~~~~~~~~~~~ii~di~D~egD~~~GirTlpV~lG~k~a~~l~~~l~~~ay~~~~  345 (400)
                      |.+.. +    .+..  +...++..+..++++.+++..||+||+|+|+++|+||+||++|+|+++++...++..+|+..+
T Consensus       153 g~~yv-q----~~~~--~~~~ll~sl~~g~l~~~il~~Nn~~D~~~D~~~Gk~Tl~v~lG~~~a~~l~~~l~~~ay~~~~  225 (284)
T TIGR00751       153 GTQYL-Q----AHRV--DWVGILPAVATGLLACAVLNINNLRDIPTDARAGKNTLAVRLGDARTRMYHQGLLAVAGVCTF  225 (284)
T ss_pred             HHHHH-h----cCCC--CHHHHHHHHHHHHHHHHHHHHcCcccchhHHHcCCEeehhhcchHhHHHHHHHHHHHHHHHHH
Confidence            76553 2    2222  223344455566778888999999999999999999999999999999999999889988766


Q ss_pred             HHHHhhhhhhHHH
Q 015791          346 IVGASSSFQLVKL  358 (400)
Q Consensus       346 ~~g~~~~~~~~~~  358 (400)
                      +.......+++.+
T Consensus       226 ~~~~~~~~p~~~l  238 (284)
T TIGR00751       226 VFMLATPISWWCV  238 (284)
T ss_pred             HHHHHhhchHHHH
Confidence            5544444555433

This membrane-associated enzyme converts 1,4-dihydroxy-2-naphthoic acid (DHNA) to demethylmenaquinone, a step in menaquinone biosynthesis.

>PRK12871 ubiA prenyltransferase; Reviewed

Probab=99.96  E-value=9.3e-28  Score=235.05  Aligned_cols=257  Identities=16%  Similarity=0.153  Sum_probs=169.7

Q ss_pred             HHHHHHHhhhccchHHHHHHHHHHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccC-------
Q 015791          110 KKLHALYVFTRPFAMIGTIVGITSIAILPLQSFADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADVEIDKVN-------  182 (400)
Q Consensus       110 ~~l~~y~~l~Rp~~~~~~~l~~l~g~~lA~~~~~~~~~~~l~~~ll~ll~~~l~~~a~~~iNd~~D~e~D~in-------  182 (400)
                      +++++|++++||+++.....+++.|.++|......+++..   +++.++++.++..++|++|||+|+|+|+.|       
T Consensus         3 ~~~~~~~~l~Rp~~l~~~~~~~~~g~~lA~~~~g~~~~~~---~~l~~l~~~l~~~ag~~iND~~D~~~D~~~v~rtm~r   79 (297)
T PRK12871          3 ETLKAYIDLTRAHFLPAWPLLFCSGLVLAFANYGGFSWEL---TIKAALIGLFGFEAGFVLNDYVDRKRDRLDVENTLTR   79 (297)
T ss_pred             chHHHHHHHHhHHHHHHHHHHHHHHHHHHHHccCCCCHHH---HHHHHHHHHHHHHHHHHHhhHHHHhcCcchHhhhhhc
Confidence            4688999999999998877777788888742112334432   232344455555778999999999999865       


Q ss_pred             --C--CCCCcccCcCCHHHHHHHHHHHHHHHHHHHHHhch----hHHHHHHHHHHHHHhhccCCccccccccC---CCcc
Q 015791          183 --K--PDLPLASGDLSMGTGLAITLTLSLTSLAIALSLQS----PPLIFGLIVWFLLGTAYSVDLPFLRWKTK---PFLA  251 (400)
Q Consensus       183 --k--p~RPl~sG~is~~~a~~~~~~l~~lgl~l~~~lg~----~~l~~~l~~~~~l~~~Ys~~~pplrlKr~---~~~g  251 (400)
                        |  ++||+++|++|+++++.+.+++.++|+.++..++.    ..+.++ +.+.++++.|+.      .||.   |. +
T Consensus        80 ~~~P~~~Rpl~sG~is~~~a~~~~i~l~~i~~~l~~~l~~~~~~~~~~l~-~~~~~~~~~Y~~------~kr~~~~p~-~  151 (297)
T PRK12871         80 YWRPFKERPIPSGKLSSKNAFALFILLAAVTSALILTLPYPNSLYVFVIM-LYSYGIEAFYQV------KKRNQKYPV-A  151 (297)
T ss_pred             cccCCCCCccCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhc------ccccccccH-H
Confidence              3  48999999999999999999999998888766543    222222 345677788884      2332   31 2


Q ss_pred             hHHHH-HHHHHHHHHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHHHHHHhhcCCchhhHhcCCccchhhhchhhHH
Q 015791          252 GMCMV-TVFGLVYQFSFFIHFQKYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVL  330 (400)
Q Consensus       252 ~l~i~-~~~g~~~~~G~~~~~~~~v~g~~~~~~~~l~~~~~~~~~~~~~~~ii~di~D~egD~~~GirTlpV~lG~k~a~  330 (400)
                      .+ ++ ...+. ++++.+.     ..|. .  +...+...++..+|+.+++++||++|+|||++.|+||+|+++|++++.
T Consensus       152 ~l-~G~~~~~~-~~~~g~~-----~~g~-~--~~~~~ll~~~~~~w~~~~~~~~a~~D~e~D~~~G~~Tlpv~~G~~~t~  221 (297)
T PRK12871        152 QL-LGRTDFTL-FPAAGYL-----CYGQ-P--DMTALLYMVFFYPWTMAHLGLNDFIDLENDRARGMKSIAVLYGMKGTM  221 (297)
T ss_pred             HH-HHHHHHHH-HHHHHHH-----HhCC-C--cHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHcCCeeeeeeechHHHH
Confidence            22 22 22233 2222222     1232 1  223344456667789999999999999999999999999999999887


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHccCCChHHHHHHHH
Q 015791          331 RLCVYALFFAYGVSVIVGASSSFQLVKLVSIIGHSTLAFLLWLRAQTVDLSNNASTYSFYM  391 (400)
Q Consensus       331 ~l~~~l~~~ay~~~~~~g~~~~~~~~~~~~~~g~~~l~~~l~~~~~~~d~~~~~~~~~f~~  391 (400)
                      ++...+..+..+..+  +.....++  ..+....++.+..+.+|.+..+.+++++|-+-|.
T Consensus       222 ~~i~~~~~l~~l~~~--~~~~~~g~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~  278 (297)
T PRK12871        222 YWVTGFTALHFLAAI--FFLRELGP--IALYGFLAGFVLLAGANLYLWKEKSQDAGMKILP  278 (297)
T ss_pred             HHHHHHHHHHHHHHH--HHHHHhhH--HHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHH
Confidence            655444434333222  22233332  2223333455667778888889999999966554

>TIGR02235 menA_cyano-plnt 1,4-dihydroxy-2-naphthoate phytyltransferase

Probab=99.96  E-value=1.5e-26  Score=225.39  Aligned_cols=229  Identities=14%  Similarity=0.134  Sum_probs=173.3

Q ss_pred             HHhhhccchHHHHHHHHHHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhcccccc--cccCCCCCCcccCc
Q 015791          115 LYVFTRPFAMIGTIVGITSIAILPLQSFADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADVEI--DKVNKPDLPLASGD  192 (400)
Q Consensus       115 y~~l~Rp~~~~~~~l~~l~g~~lA~~~~~~~~~~~l~~~ll~ll~~~l~~~a~~~iNd~~D~e~--D~inkp~RPl~sG~  192 (400)
                      |++.+||+++..+++++++|.++|....+.+++..   +++++++++++++++|.+|||+|.+.  |+.+. .+ ..++.
T Consensus         2 w~~a~Rp~tl~~s~~pv~lG~alA~~~~~~f~~~~---~ll~li~~l~~q~~~N~~Ndy~D~~~G~D~~~~-~~-~~~~~   76 (285)
T TIGR02235         2 WLAAIKPPLYSVAVMPILVGTAVAWGQGGVFHLDR---FALFLIAAILILAWINLTNDVFDSDTGIDRFKL-HS-IVNLT   76 (285)
T ss_pred             hHHHhhhhHHHHHHHHHHHHHHHHHHcCCCcCHHH---HHHHHHHHHHHHHHHHHHHhHHHHhcCCCcccc-CC-ccccc
Confidence            67899999999999999999999975445677653   56788999999999999999999864  77432 11 22233


Q ss_pred             CCHHHHHHHHHHHHHHHHH----HHHHhchhHHHHHHHHHHHHHhhccCCccccccccCCCcchHHHHHHHHHHHHHHHH
Q 015791          193 LSMGTGLAITLTLSLTSLA----IALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQFSFF  268 (400)
Q Consensus       193 is~~~a~~~~~~l~~lgl~----l~~~lg~~~l~~~l~~~~~l~~~Ys~~~pplrlKr~~~~g~l~i~~~~g~~~~~G~~  268 (400)
                      .++++......++..++..    +.+..|++.+.+++ ++++.+++||  .||+++|++++ |++.++..+|.+.+.|.+
T Consensus        77 ~~~~~v~~~~~~~~~ia~~~g~~L~~~~~~~~l~lg~-~g~~~~~~Yt--~gP~~l~y~gL-GE~~v~l~~G~l~v~g~~  152 (285)
T TIGR02235        77 GSRSLVFWLANFFLLIGLVGIAALSWRWQITVLALVG-LCCFLGYLYQ--GPPFRLGYQGL-GEPICWLCFGPLAIAAAL  152 (285)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH-HHHHHHHhhc--CCCcccCCCCc-cHHHHHHHHHHHHHHHHH
Confidence            4567777666666555444    44445654445554 6888999999  58999999997 999999999988887765


Q ss_pred             HHHHHHhhcCCccchHHHHHHHHHHHHHHHHHHHHhhcCCchhhHhcCCccchhhhchhhHHHHHHHHHHHHHHHHHHHH
Q 015791          269 IHFQKYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYGVSVIVG  348 (400)
Q Consensus       269 ~~~~~~v~g~~~~~~~~l~~~~~~~~~~~~~~~ii~di~D~egD~~~GirTlpV~lG~k~a~~l~~~l~~~ay~~~~~~g  348 (400)
                      .. +    .+.  ++...+...+.+++.+.++.+.||+||+|+|++.|+||+||++|+|++.++...+...+|+..+...
T Consensus       153 yv-q----t~~--~~~~~~l~sl~~gl~~~~iL~~Nn~rD~e~D~~~Gk~TL~v~lG~~~a~~l~~~l~~~~y~~~i~~v  225 (285)
T TIGR02235       153 YA-Q----SQS--FSLIPWKASILVGLATTLILFCSHFHQVEDDLAHGKRSPVVRLGTKLAAKIVPWVISLSYVVLLIAV  225 (285)
T ss_pred             HH-h----CCc--CcHHHHHHHHHHHHHHHHHHHhcCCccchhHHHcCCcceeheecHHhHHHHHHHHHHHHHHHHHHHH
Confidence            53 2    222  2334455566777778888999999999999999999999999999999999999999998776655


Q ss_pred             HhhhhhhHHHH
Q 015791          349 ASSSFQLVKLV  359 (400)
Q Consensus       349 ~~~~~~~~~~~  359 (400)
                      .....+|+.++
T Consensus       226 ~~~~~p~~~ll  236 (285)
T TIGR02235       226 IGGFLPWTTLL  236 (285)
T ss_pred             HHhhhHHHHHH
Confidence            54445554433

This family of phytyltransferases, found in plants and cyanobacteria, are involved in the biosythesis of phylloquinone (Vitamin K1). Phylloquinone is a critical component of photosystem I. The closely related MenA enzyme from bacteria transfers a prenyl group (which only differs in the saturation of the isoprenyl groups) in the biosynthesis of menaquinone. Activity towards both substrates in certain organisms should be considered a possibility.

>PRK13105 ubiA prenyltransferase; Reviewed

Probab=99.96  E-value=1e-26  Score=225.57  Aligned_cols=218  Identities=21%  Similarity=0.192  Sum_probs=154.0

Q ss_pred             HHHHHhhhccchHHHHHHHHHHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccCCCCCCcccC
Q 015791          112 LHALYVFTRPFAMIGTIVGITSIAILPLQSFADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADVEIDKVNKPDLPLASG  191 (400)
Q Consensus       112 l~~y~~l~Rp~~~~~~~l~~l~g~~lA~~~~~~~~~~~l~~~ll~ll~~~l~~~a~~~iNd~~D~e~D~inkp~RPl~sG  191 (400)
                      ++.+++++||.+|+.+.+++..|.++| ++.+  ++.+   ++.++.-....+.+.|++|||+|+|.|+.|++.+.. .|
T Consensus         1 ~~~~~~~~rP~~wi~~a~pf~~g~~la-~~~~--~~~~---l~~~l~~~~~~n~am~~~Ndy~D~~~d~dn~r~~g~-~g   73 (282)
T PRK13105          1 IRQLLLSSRPISWINTAYPFAAAYLLA-GGEI--DWLF---VVGTVFFLIPYNLAMYGINDVFDYESDLRNPRKGGV-EG   73 (282)
T ss_pred             ChhHHHhcccHHHhccHHHHHHHHHHH-CCCC--ChHH---HHHHHHHHHHHHHHHHhhhhhhhhhcCCCCcccCCC-CC
Confidence            367899999999999999998899999 3322  3321   222233344555555777999999999999764332 58


Q ss_pred             cCCHHHHHHHHHHHH----H-HHHHHHHHhchhHHHHHHHHHHHHHhhccCCccccccccCCCcchHHHHHHHHHHHHHH
Q 015791          192 DLSMGTGLAITLTLS----L-TSLAIALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQFS  266 (400)
Q Consensus       192 ~is~~~a~~~~~~l~----~-lgl~l~~~lg~~~l~~~l~~~~~l~~~Ys~~~pplrlKr~~~~g~l~i~~~~g~~~~~G  266 (400)
                      .+++++.........    + .++.+....+++.+.++ .++++.++.||  .||.|+|++++.++++.+..+.....+|
T Consensus        74 ~i~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~l~-~~ai~~~~~YS--~~p~rlk~~gl~d~~t~~~~f~~~~v~G  150 (282)
T PRK13105         74 AVLDRAMHRTTLWASVVTTVPFLVVLLAVGSWASGLVL-AVSVFAVVAYS--APGLRFKERPFLDSLTSSTHFVSPALYG  150 (282)
T ss_pred             ccCHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH-HHHHHHHHHhc--CCCccccccchHHHHHHHHHHHHHHHHH
Confidence            899998744333222    2 23333333355555544 46888999999  4899999999987765544433224444


Q ss_pred             HHHHHHHHhhcCCccchHHHHHHHHHHHHHHHHHHHHhhcCCchhhHhcCCccchhhhchhhHHHHHHHHHHHHHHHHHH
Q 015791          267 FFIHFQKYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYGVSVI  346 (400)
Q Consensus       267 ~~~~~~~~v~g~~~~~~~~l~~~~~~~~~~~~~~~ii~di~D~egD~~~GirTlpV~lG~k~a~~l~~~l~~~ay~~~~~  346 (400)
                      .+.     + ++..  +...++....+.+++.+++++||+||+|+||+.|+||+|+++|+|++.+++..++.+++++.+.
T Consensus       151 ~~~-----~-~~~~--~~~~~l~~~~~~~~~~a~~ii~~irDie~Dr~~G~~Tlpv~lG~~~a~~~~~~l~~~a~~~~~~  222 (282)
T PRK13105        151 LVL-----A-GAPF--TAALWAVLAAFFLWGMASHAFGAVQDVVADREAGIASIATVLGARRTVRLAVGLYAAAAVLMLA  222 (282)
T ss_pred             HHH-----h-hccc--cHHHHHHHHHHHHHHHHHHHHHhCcchHhHHHcCCccchHHhcHHHHHHHHHHHHHHHHHHHHH
Confidence            332     1 3322  2334555667777899999999999999999999999999999999999999998888877664


Q ss_pred             H
Q 015791          347 V  347 (400)
Q Consensus       347 ~  347 (400)
                      .
T Consensus       223 ~  223 (282)
T PRK13105        223 L  223 (282)
T ss_pred             H
Confidence            3

>COG1575 MenA 1,4-dihydroxy-2-naphthoate octaprenyltransferase [Coenzyme metabolism]

Probab=99.96  E-value=2.3e-26  Score=221.75  Aligned_cols=272  Identities=17%  Similarity=0.176  Sum_probs=194.5

Q ss_pred             HHHHHHHhhhccchHHHHHHHHHHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhccccc--cccc----CC
Q 015791          110 KKLHALYVFTRPFAMIGTIVGITSIAILPLQSFADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADVE--IDKV----NK  183 (400)
Q Consensus       110 ~~l~~y~~l~Rp~~~~~~~l~~l~g~~lA~~~~~~~~~~~l~~~ll~ll~~~l~~~a~~~iNd~~D~e--~D~i----nk  183 (400)
                      ++.+.|++++|||++..++.+++.|.++|......+++.   ..+++++++++++...|..|||.|.+  .|..    .+
T Consensus         6 ~~~~~wl~~~rP~Tl~aai~Pv~~G~a~A~~~~~~f~~~---~~ll~Li~~~~iq~~vN~~NdY~D~~KG~D~~g~~~~~   82 (303)
T COG1575           6 SKTQLWLELARPKTLPAAIAPVIVGTALAFWYGKSFNLL---VALLALIAAILLQILVNLANDYFDYKKGTDTHGPDRLK   82 (303)
T ss_pred             HHHHHHHHhcCccchHHHHHHHHHHHHHHHHHccchHHH---HHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCCCcccc
Confidence            456889999999999999999999999997654446553   36788999999999999999999986  5642    22


Q ss_pred             CCCCcccCcCCHHHHHHHHHHHHHHHHHH----HHHhchhHHHHHHHHHHHHHhhccCCccccccccCCCcchHHHHHHH
Q 015791          184 PDLPLASGDLSMGTGLAITLTLSLTSLAI----ALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVF  259 (400)
Q Consensus       184 p~RPl~sG~is~~~a~~~~~~l~~lgl~l----~~~lg~~~l~~~l~~~~~l~~~Ys~~~pplrlKr~~~~g~l~i~~~~  259 (400)
                      .++-+...+++++..+.+.+.+...+.++    ....+++.+.++ +++++.+++|+.  +|.++++.|+ |++.++..+
T Consensus        83 ~~g~I~~~~~k~~~~l~l~l~~~~g~~llg~~~~~~s~~~~l~lG-~l~~~~g~~YTg--Gp~PlgY~gL-GEi~~~vff  158 (303)
T COG1575          83 QSGLIVRQSMKPALILSLALFLLAGLALLGVILAALSDWLVLLLG-LLCIAAGILYTG--GPFPLGYMGL-GEIFVGVFF  158 (303)
T ss_pred             ccceeecccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH-HHHHHheeeecc--CCcCcccCCH-HHHHHHHHH
Confidence            34555666777777777666555444333    344566545555 468999999995  7999999997 999999999


Q ss_pred             HHHHHHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHHHHHHhhcCCchhhHhcCCccchhhhchhhHHHHHHHHHHH
Q 015791          260 GLVYQFSFFIHFQKYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFF  339 (400)
Q Consensus       260 g~~~~~G~~~~~~~~v~g~~~~~~~~l~~~~~~~~~~~~~~~ii~di~D~egD~~~GirTlpV~lG~k~a~~l~~~l~~~  339 (400)
                      |.+.+.|.|.. |    .+  ..+...+...+.+++.+..+...|++||+|+|+++|++|+||++|+++++.+...++..
T Consensus       159 G~l~v~g~~yi-q----t~--~~~~~~ll~slp~gil~~~Il~aNNirDie~D~~~gk~TLavrLG~~~~~~l~~~l~~~  231 (303)
T COG1575         159 GPLIVLGAYYI-Q----TG--RLSWAILLPSLPVGILIANILLANNLRDIEEDIRNGKYTLAVRLGRKNARKLYAALLVV  231 (303)
T ss_pred             HHHHHHHHHHH-h----cc--cchHHHHHHHHHHHHHHHHHHHhcccccchhHHhcCCcceeeeeccHhHHHHHHHHHHH
Confidence            98877776543 2    11  22333455566777778888999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHccCCC-h----HH--HHHHHHHHHHHhhh
Q 015791          340 AYGVSVIVGASSSFQLVKLVSIIGHSTLAFLLWLRAQTVDLSN-N----AS--TYSFYMFIWKAIVL  399 (400)
Q Consensus       340 ay~~~~~~g~~~~~~~~~~~~~~g~~~l~~~l~~~~~~~d~~~-~----~~--~~~f~~~i~~l~~~  399 (400)
                      +|++.++.......+|+.++.++.    +....+..+.+..+. +    .+  .....+.+|.+.++
T Consensus       232 a~l~~~~~~i~~~~~~~~ll~ll~----~Pl~ir~~r~v~~~~~~~~~~p~l~~~~~~~~~~~~l~~  294 (303)
T COG1575         232 AYLAIVIFVILGLFPVWGLLFLLA----LPLAIRAARPVRQNQVPATLVPMLKNTVKANLLWNLLLA  294 (303)
T ss_pred             HHHHHHHHHHHHhchHHHHHHHHH----HHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHHHHHH
Confidence            998877655555555544333322    223334444442211 1    12  22455667776654

>PRK12872 ubiA prenyltransferase; Reviewed

Probab=99.95  E-value=1.3e-26  Score=225.73  Aligned_cols=230  Identities=21%  Similarity=0.219  Sum_probs=159.3

Q ss_pred             HHHHHHHhhhccchHHHHHHHHHHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccCCCCCCcc
Q 015791          110 KKLHALYVFTRPFAMIGTIVGITSIAILPLQSFADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADVEIDKVNKPDLPLA  189 (400)
Q Consensus       110 ~~l~~y~~l~Rp~~~~~~~l~~l~g~~lA~~~~~~~~~~~l~~~ll~ll~~~l~~~a~~~iNd~~D~e~D~inkp~RPl~  189 (400)
                      +.+++++++.|+.+......++..+.....  .  .++..   ....+++.++.+.++|++||+.|+|+|++|+|+||.+
T Consensus         2 ~~~~~~~~~~~~~~~~~a~~~~~l~~~~~~--~--~~~~~---~~~~~~~~~~~~~~~~~~N~~~D~~~D~~n~~~R~~~   74 (285)
T PRK12872          2 KLLFAFLKLFRYGNLLIAALGQSLVYMASL--L--LGLPI---SWLLLLITFLIAAAVYIINYLTDLEEDIINKPERVVF   74 (285)
T ss_pred             hHHHHHHHHHHHccHHHHHHHHHHHHHHHH--H--HcChh---HHHHHHHHHHHHHHHHHhhhhcCCchhhcCCCchHHH
Confidence            457899999999998877766655432110  0  11111   2356678899999999999999999999999999988


Q ss_pred             cCcCCHHHHHHHHHHHHHHHHHHH-HHhchhHHHHHHHHHHHHHhhccCCcccc-ccccCCCcchHHHHHHHHHHHHHHH
Q 015791          190 SGDLSMGTGLAITLTLSLTSLAIA-LSLQSPPLIFGLIVWFLLGTAYSVDLPFL-RWKTKPFLAGMCMVTVFGLVYQFSF  267 (400)
Q Consensus       190 sG~is~~~a~~~~~~l~~lgl~l~-~~lg~~~l~~~l~~~~~l~~~Ys~~~ppl-rlKr~~~~g~l~i~~~~g~~~~~G~  267 (400)
                      +++...+.+..+..+...+++.+. ...|++.+.+++ ++.++++.||.  ||. |+||.|.+||++++..+|..+.++.
T Consensus        75 s~~~~~~~~~~l~~i~~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~Ys~--~~~~~lk~~p~~~~~~vg~~~g~~~~~~~  151 (285)
T PRK12872         75 SETKAYGLFLLLNVLGLYLGAYLLAVIGGPKFALIFI-IPLILGILYSV--FFKRRLKRIPLFKNLVVSLLWALSPLILG  151 (285)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHH-HHHHHHHHHhC--hhHHHHhhhhhHhhHHHHHHHHHHHHHHH
Confidence            554433333333334444444432 234776666654 56778999995  454 5899999999999998887666543


Q ss_pred             HHHHHHHhhcCCccchHHHHHHHHHHHHHHHHHHHHhhcCCchhhHhcCCccchhhhchhhHHHHHHHHHHHHHHHHHHH
Q 015791          268 FIHFQKYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYGVSVIV  347 (400)
Q Consensus       268 ~~~~~~~v~g~~~~~~~~l~~~~~~~~~~~~~~~ii~di~D~egD~~~GirTlpV~lG~k~a~~l~~~l~~~ay~~~~~~  347 (400)
                      +..     .+..  ++...+....+++++..++++++|++|+|+|+++|+||+|+++|+|++.++...+..++++..+..
T Consensus       152 ~~~-----~~~~--~~~~~~~~~~~~fl~~~~~~~~~d~~D~e~D~~~G~~Tlpv~lG~~~t~~~~~~~~~~~~~~~~~~  224 (285)
T PRK12872        152 VYY-----YQLT--IFSLLLLYAVFIFLKSFIREIVFDIKDIEGDRKSGLKTLPIVLGKERTLKFLLILNLLFLILLILG  224 (285)
T ss_pred             HHh-----cccc--cchHHHHHHHHHHHHHHHHHHHHhcccchhHHHcCCcccchhcchHHHHHHHHHHHHHHHHHHHHH
Confidence            322     1221  122333334555556778899999999999999999999999999999999888888877766654


Q ss_pred             HHhhhhhhH
Q 015791          348 GASSSFQLV  356 (400)
Q Consensus       348 g~~~~~~~~  356 (400)
                      ......++.
T Consensus       225 ~~~~~~~~~  233 (285)
T PRK12872        225 VYTGLLPLL  233 (285)
T ss_pred             HHHhHhhHH
Confidence            443333443

>PF01040 UbiA: UbiA prenyltransferase family; InterPro: IPR000537 The UbiA family of prenyltransferases includes bacterial 4-hydroxybenzoate octaprenyltransferase (gene ubiA); yeast mitochondrial para-hydroxybenzoate--polyprenyltransferase (gene COQ2); and protohaem IX farnesyltransferase (haem O synthase) from yeast and mammals(gene COX10), and from bacteria (genes cyoE or ctaB) [, ]

Probab=99.95  E-value=2.3e-26  Score=218.97  Aligned_cols=243  Identities=25%  Similarity=0.301  Sum_probs=165.6

Q ss_pred             HHHHHHHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhccccccccc--CCCCCCcccCcCCHHHHHHHHHH
Q 015791          127 TIVGITSIAILPLQSFADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADVEIDKV--NKPDLPLASGDLSMGTGLAITLT  204 (400)
Q Consensus       127 ~~l~~l~g~~lA~~~~~~~~~~~l~~~ll~ll~~~l~~~a~~~iNd~~D~e~D~i--nkp~RPl~sG~is~~~a~~~~~~  204 (400)
                      +..+++.|.+++...  ..++..   +..+.++.++.+.++|.+||+.|+|+|+.  |+|+||+++|+++++++..++.+
T Consensus         4 ~~~~~l~~~~~~~~~--~~~~~~---~~~~~l~~~~~~~~~~~~Nd~~D~~~D~~~~~~~~rPl~~g~i~~~~~~~~~~~   78 (257)
T PF01040_consen    4 SFLPVLAGLALASGG--PFNWPI---FLLGLLAVFLLQLAVYLLNDYFDYEEDRIHPNKPNRPLPSGRISPRQALIFALI   78 (257)
T ss_pred             HHHHHHHHHHHHHcC--CCCHHH---HHHHHHHHHHHHHHHHHhhChhhhhcCcccccccCcchhHHHHhHHHHHHHHHH
Confidence            345566664444332  334422   45566777799999999999999999999  88999999999999999999999


Q ss_pred             HHHHHHHHHHHhchhHHHHHHHHHHHHHhhccCCccccccccCCCcchHHHHHHHHHHHHHHHHHHHHHHhhcCCccchH
Q 015791          205 LSLTSLAIALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQFSFFIHFQKYVLGRPVVITR  284 (400)
Q Consensus       205 l~~lgl~l~~~lg~~~l~~~l~~~~~l~~~Ys~~~pplrlKr~~~~g~l~i~~~~g~~~~~G~~~~~~~~v~g~~~~~~~  284 (400)
                      +.++++.+++..++..+.+.+ ++.+.+++||   ||+|+||++++++++++..++..+..|.+.      .++..  +.
T Consensus        79 ~~~l~l~l~~~~~~~~~~~~~-~~~~~~~~Ys---~~~~lk~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~--~~  146 (257)
T PF01040_consen   79 LLLLGLLLALLLGPWFLLILL-LGFLLGLLYS---PPLRLKRRPLWGELVVALVFGLLILLGAYA------AGGDP--PP  146 (257)
T ss_pred             HHHHHHHHHHhcCchhHHHHH-HHHHHHHHHh---hhhhhcceeccchhhHHHhhhHhhhhhhhh------cCCcc--cH
Confidence            999999999888887777664 4666779999   788999999999999888777665555443      23221  22


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhcCCchhhHhcCCccchhhhchhhHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHH
Q 015791          285 PLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYGVSVIVGASSSFQLVKLVSIIGH  364 (400)
Q Consensus       285 ~l~~~~~~~~~~~~~~~ii~di~D~egD~~~GirTlpV~lG~k~a~~l~~~l~~~ay~~~~~~g~~~~~~~~~~~~~~g~  364 (400)
                      +.+....+..++.......+|++|+|+|++.|+||+|+++|++++..  ..+....++. ..........+   ......
T Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~D~~~D~~~g~~Tl~v~~G~~~~~~--~~~~~~~~~~-~~~~~~~~~~~---~~~~~~  220 (257)
T PF01040_consen  147 PPFLLAIFFFLLIFAIMFFNDIRDIEGDRKAGRRTLPVLLGEKKARY--LLLTAGLLLF-LLLLLGLFSPW---PLIIAL  220 (257)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHcCCcchHHHHHHHHHHH--HHHHHHHHHH-HHHHHHHHHHH---HHHHHH
Confidence            33333444455566667788999999999999999999999999976  2222222222 11111111111   122223


Q ss_pred             HHHHHHHHHHHHHccCCChHHHHHHHHH
Q 015791          365 STLAFLLWLRAQTVDLSNNASTYSFYMF  392 (400)
Q Consensus       365 ~~l~~~l~~~~~~~d~~~~~~~~~f~~~  392 (400)
                      ...+..++...+..+.++++.+++++++
T Consensus       221 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~  248 (257)
T PF01040_consen  221 LLAALALIFILWFFRKRDPKKPERLFFF  248 (257)
T ss_pred             HHHHHHHHHHHHHHhcCCcchHHHHHHH
Confidence            3334444555566666666666655533

These are integral membrane proteins, which probably contain seven transmembrane segments. The signature is also found in cytochrome C oxidase assembly factor. The complexity of cytochrome C oxidase requires assistance in building the complex, and this is carried out by the cytochrome C oxidase assembly factor.; GO: 0004659 prenyltransferase activity, 0016021 integral to membrane

>KOG1381 consensus Para-hydroxybenzoate-polyprenyl transferase [Coenzyme transport and metabolism]

Probab=99.94  E-value=5.1e-27  Score=219.71  Aligned_cols=264  Identities=17%  Similarity=0.125  Sum_probs=193.0

Q ss_pred             HHHHHHHHHhhhccchHHHHHHHH---HHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccCC-
Q 015791          108 LLKKLHALYVFTRPFAMIGTIVGI---TSIAILPLQSFADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADVEIDKVNK-  183 (400)
Q Consensus       108 ~~~~l~~y~~l~Rp~~~~~~~l~~---l~g~~lA~~~~~~~~~~~l~~~ll~ll~~~l~~~a~~~iNd~~D~e~D~ink-  183 (400)
                      -+.+++.|.+++|.+.++++.+..   ....++|...  ...+.. .-+.+.-++++++++++|.+||+.|+|+|+..+ 
T Consensus        60 ~p~r~~pYaqLmRldkPiGTwLLywPCtWSIamaAda--g~~p~~-~mL~LFG~GAllMRgAGCtINDlwDkdlD~KVeR  136 (353)
T KOG1381|consen   60 SPKRWKPYAQLMRLDKPIGTWLLYWPCTWSIAMAADA--GLLPSI-KMLALFGVGALLMRGAGCTINDLWDKDLDAKVER  136 (353)
T ss_pred             CCccchhHHHHHhcCCCceeeeeecchHHHHHhccCC--Cccchh-HHHHHhcccHHHhccCCceehhhhhhhhhhhHhh
Confidence            345689999999999999987644   3344555432  122221 112345579999999999999999999998755 


Q ss_pred             -CCCCcccCcCCHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHhhccCCccccccccCCCcchHHHHHHHHHH
Q 015791          184 -PDLPLASGDLSMGTGLAITLTLSLTSLAIALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLV  262 (400)
Q Consensus       184 -p~RPl~sG~is~~~a~~~~~~l~~lgl~l~~~lg~~~l~~~l~~~~~l~~~Ys~~~pplrlKr~~~~g~l~i~~~~g~~  262 (400)
                       +.||+++|++|+++|..+..+.+.+|+.+...+|+....++. .++.+.+.|+.      +||.+.+.++..+..+.+.
T Consensus       137 tklRPlAsG~ls~~qaI~fL~~ql~~gLgiLlqLn~ysi~lg~-~sl~~v~~ypl------~kr~TY~pq~vLgltfnwG  209 (353)
T KOG1381|consen  137 TKLRPLASGSLSPRQAIGFLGAQLSLGLGILLQLNWYSIALGA-SSLALVITYPL------MKRFTYWPQLVLGLTFNWG  209 (353)
T ss_pred             hcccccccCCcchhHHHHHHHHHHHHhHHHHHhccHHHHHhcc-cccccEEEeeh------hhhcchhHHHHHhhhcchh
Confidence             489999999999999999999999999999999988877764 57788899996      8999999998766554433


Q ss_pred             HHHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHHHHHHhhcCCchhhHhcCCccchhhhchhhHHHHHHHHHHHHHH
Q 015791          263 YQFSFFIHFQKYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYG  342 (400)
Q Consensus       263 ~~~G~~~~~~~~v~g~~~~~~~~l~~~~~~~~~~~~~~~ii~di~D~egD~~~GirTlpV~lG~k~a~~l~~~l~~~ay~  342 (400)
                      ..+|+     ..+ ++.. .+...+-+++--..|++..++++++||.++|.+.|+|+.+.++|++...|++..- .....
T Consensus       210 AllGw-----~A~-~g~~-~~s~~~plYls~v~Wtl~YDTIYAHQDK~dDvk~gvkSTALrfG~nTK~wl~gf~-a~~ia  281 (353)
T KOG1381|consen  210 ALLGW-----CAL-KGSL-SPSAVLPLYLSGVCWTLIYDTIYAHQDKRDDVKIGVKSTALRFGDNTKPWLSGFG-AAQIA  281 (353)
T ss_pred             hhhcc-----hhh-cCcc-ChhhhhHHHHhhhhhhhhhhhhhhcccchhhhHhcchhhhhhcCCCCchHHhhhh-HHHHH
Confidence            33332     122 2222 1211222233344678899999999999999999999999999999888876432 23333


Q ss_pred             HHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHccCCChHHHHHHHHH
Q 015791          343 VSVIVGASSSFQLVKLVSIIGHSTLAFLLWLRAQTVDLSNNASTYSFYMF  392 (400)
Q Consensus       343 ~~~~~g~~~~~~~~~~~~~~g~~~l~~~l~~~~~~~d~~~~~~~~~f~~~  392 (400)
                      ....+|+.+.+.|-   +..+....+..+.+|...+|++|+.+|-.+|..
T Consensus       282 ~La~aG~~s~q~~p---yy~~lg~~~~~L~~~i~~vdiDnp~dC~k~f~s  328 (353)
T KOG1381|consen  282 SLAAAGIASDQTWP---YYAALGAVAARLGSQIYKVDIDNPSDCWKKFKS  328 (353)
T ss_pred             HHHHhhhccCCCch---HHHHHHHHHHHHHhheeeeecCChHHHHHHHHh
Confidence            34556777777663   333455667788899999999999999776643

>PRK12875 ubiA prenyltransferase; Reviewed

Probab=99.94  E-value=2.6e-24  Score=209.17  Aligned_cols=221  Identities=21%  Similarity=0.239  Sum_probs=140.9

Q ss_pred             HHHHHHHHHhhhccchHHHHHHHHHHHHHHhcccCCC-CChHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccCCCCC
Q 015791          108 LLKKLHALYVFTRPFAMIGTIVGITSIAILPLQSFAD-LTPKYFMEFLKALLSAVLMNNYVGTVNQVADVEIDKVNKPDL  186 (400)
Q Consensus       108 ~~~~l~~y~~l~Rp~~~~~~~l~~l~g~~lA~~~~~~-~~~~~l~~~ll~ll~~~l~~~a~~~iNd~~D~e~D~inkp~R  186 (400)
                      ..+.++.++++.||+++..++.+++.|.++|....++ +++..+  .+++ ...+..+.+.|++||++|+|+||.|++.+
T Consensus         4 ~~~~~~~l~~l~RP~~~~~~~~p~l~G~~lA~~~~~~~~~~~~~--~ll~-~~~i~~Nl~~y~iND~~D~D~Dr~~prk~   80 (282)
T PRK12875          4 LGDRLRYLLVLSRPRFWLYLAGPVVVGVAYAADSVADLFSPAAV--ALFA-YFLFPANVFLYGVNDVFDADTDELNPKKD   80 (282)
T ss_pred             hHHHHHHHHHHhCccchHHHHHHHHHHHHHHhccCcccccHHHH--HHHH-HHHHHHHHHHhcchhhhhhhccccCCCcc
Confidence            3567888999999999999999999999999654332 343211  1111 11134556678899999999999998654


Q ss_pred             C---cccCcCCHHHHHH-HHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHhhccCCccccccccCCCcchHHHHHHHHHH
Q 015791          187 P---LASGDLSMGTGLA-ITLTLSLTSLAIALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLV  262 (400)
Q Consensus       187 P---l~sG~is~~~a~~-~~~~l~~lgl~l~~~lg~~~l~~~l~~~~~l~~~Ys~~~pplrlKr~~~~g~l~i~~~~g~~  262 (400)
                      .   ++   .+.+.+.. ..+....+++.+.+..++....+ +++.++++++||  .||+|+|++++.+.. +.+.+. .
T Consensus        81 ~~r~~~---~s~~~~~~~~~~l~~~l~l~l~~~~~~~~~~~-ll~~i~~~~~YS--~pP~rlk~~p~~~~~-~~g~~~-~  152 (282)
T PRK12875         81 REREVR---YRGDRRVLVAVALSGALALAFLLVLPPAAWPA-LLAFLVLSVEYS--APPLRFKTTPVLDSL-SNGLYI-L  152 (282)
T ss_pred             CCCCcc---HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH-HHHHHHHHHHHc--CCCccchhccHHHHH-HHHHHH-H
Confidence            3   33   11122221 12223334444444444433332 245778899999  589999999985443 322222 2


Q ss_pred             HHHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHHHHHHhhcCCchhhHhcCCccchhhhchhhHHHHHHHHHHHHHH
Q 015791          263 YQFSFFIHFQKYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYG  342 (400)
Q Consensus       263 ~~~G~~~~~~~~v~g~~~~~~~~l~~~~~~~~~~~~~~~ii~di~D~egD~~~GirTlpV~lG~k~a~~l~~~l~~~ay~  342 (400)
                      ..++.|..     ..+.  .+...+  .+...+++.+++++||+||+|+|+++|+||+|+++|+|++.+++..+..++.+
T Consensus       153 ~~~~~y~~-----~tg~--~~~~~l--~~a~~l~~~~~~~in~i~Die~D~~aGi~Tlav~lG~~~a~~~~~~~~~~a~~  223 (282)
T PRK12875        153 PGVAAYAL-----VSGS--LPPLLA--VAGGWLWAMGMHTFSAIPDIEPDRAAGIRTTATVLGERRTYAYCAACWLLAAA  223 (282)
T ss_pred             HHHHHHHH-----HcCC--CcHHHH--HHHHHHHHHHHHHHHhccCHHHHHHcCCccchhhccHhhHHHHHHHHHHHHHH
Confidence            22333322     1222  222222  22235678899999999999999999999999999999999888777666655


Q ss_pred             HHHHHH
Q 015791          343 VSVIVG  348 (400)
Q Consensus       343 ~~~~~g  348 (400)
                      ..+..+
T Consensus       224 ~~~~~~  229 (282)
T PRK12875        224 AFAAVD  229 (282)
T ss_pred             HHHHHH
Confidence            555443

>PRK13591 ubiA prenyltransferase; Provisional

Probab=99.94  E-value=1.6e-24  Score=210.83  Aligned_cols=179  Identities=19%  Similarity=0.142  Sum_probs=133.4

Q ss_pred             HHHHHHHHHHHhhhhhcccccccccCCCCCCcccCcCCHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHhhcc
Q 015791          157 LLSAVLMNNYVGTVNQVADVEIDKVNKPDLPLASGDLSMGTGLAITLTLSLTSLAIALSLQSPPLIFGLIVWFLLGTAYS  236 (400)
Q Consensus       157 ll~~~l~~~a~~~iNd~~D~e~D~inkp~RPl~sG~is~~~a~~~~~~l~~lgl~l~~~lg~~~l~~~l~~~~~l~~~Ys  236 (400)
                      .+.+.+...++|++||++|+|+|++|+|+||.+    +++.+..++++..++|+.+++..|++.  ++ +++.+.+++||
T Consensus        64 ~~~~~L~~~s~~~iNd~~D~eiD~IN~P~r~~~----s~~~a~~ls~la~llGl~La~~~g~~l--l~-ll~~l~g~lYS  136 (307)
T PRK13591         64 CIAGGLIIYSVYTLDRALDSEEDAVNRSELIGS----NKKIGLLVSLLAFLLGTYILAMDGMLL--LA-FLPFITGYLYS  136 (307)
T ss_pred             HHHHHHHHHHHHHHhhhccchhhhccCcccccc----CHHHHHHHHHHHHHHHHHHHHHHhHHH--HH-HHHHHHHHHhc
Confidence            345667789999999999999999999999986    788899999999999999999888643  33 35777899999


Q ss_pred             CC--ccc--cccccCCCcchHHHHHHHHHHHHHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHHHHHHhhcCCchhh
Q 015791          237 VD--LPF--LRWKTKPFLAGMCMVTVFGLVYQFSFFIHFQKYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGD  312 (400)
Q Consensus       237 ~~--~pp--lrlKr~~~~g~l~i~~~~g~~~~~G~~~~~~~~v~g~~~~~~~~l~~~~~~~~~~~~~~~ii~di~D~egD  312 (400)
                      .+  .+|  +|+|+++.+||+.++..+|..+..+.    ..  ....  + .+...+..+.....++++++||++|+|||
T Consensus       137 ~Glk~~P~plklK~~~glGnl~V~i~~G~~i~g~~----g~--~~~~--~-~~~~~i~l~~~~~l~~~~iindirDiEGD  207 (307)
T PRK13591        137 KGIKIGKFALKLKGGLGVKNIVVGITWGGFIAGIA----GS--YCGS--L-IPVGLIFLFFGVKLFINSCVYDFKDVKGD  207 (307)
T ss_pred             CCCCCCCccccccCCCchhHHHHHHHHHHHHHHHH----Hh--hhhh--H-HHHHHHHHHHHHHHHHHHHHHHhhhhHhH
Confidence            63  124  48899999999999988886443211    00  0110  0 01111111111123567789999999999


Q ss_pred             HhcCCccchhhhchhhHHHHHHHHHHHHHHHHHHHHHhh
Q 015791          313 KQFGFQSISSKLGKENVLRLCVYALFFAYGVSVIVGASS  351 (400)
Q Consensus       313 ~~~GirTlpV~lG~k~a~~l~~~l~~~ay~~~~~~g~~~  351 (400)
                      ++.|+||+|+++|++++.++...+..++++..++.....
T Consensus       208 r~~G~kTLPV~lG~~~A~~l~~~l~~~~~l~li~~~~~g  246 (307)
T PRK13591        208 TLAGIKTLPVSLGEQKTRNLLLGIHLFSHLVLGIALIFG  246 (307)
T ss_pred             HHcCCeeEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999998888887766554443

>PLN02776 prenyltransferase

Probab=99.93  E-value=6e-24  Score=210.22  Aligned_cols=259  Identities=14%  Similarity=0.018  Sum_probs=169.9

Q ss_pred             hhccchHHHHHHHHHHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccCC--CCCCcccCcCCH
Q 015791          118 FTRPFAMIGTIVGITSIAILPLQSFADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADVEIDKVNK--PDLPLASGDLSM  195 (400)
Q Consensus       118 l~Rp~~~~~~~l~~l~g~~lA~~~~~~~~~~~l~~~ll~ll~~~l~~~a~~~iNd~~D~e~D~ink--p~RPl~sG~is~  195 (400)
                      +++|+.....+++.+.|+++|.+..+  ++.   .+++++++.+++++++|++||++|+|+|+.|+  ++||+++|++|+
T Consensus         1 L~Kpri~~lv~~ta~~G~~lA~~~~~--~~~---~l~~~~lg~~l~~aaa~~~N~i~DrdiD~~m~RT~~RPLpsGris~   75 (341)
T PLN02776          1 LSKARLSALVVATSGAGFVLGSGEAI--DLP---GLGWTCAGTMLCAASANTLNQVFEVKNDSKMKRTMRRPLPSGRISV   75 (341)
T ss_pred             CCcchhHHHHHHHHHHHHHHhcCCCC--CHH---HHHHHHHHHHHHHHHHHHHHhHHhhhhcccCCCCCCCCCCCCCCCH
Confidence            46888888888999999999854332  322   24567789999999999999999999999866  599999999999


Q ss_pred             HHHHHHHHHHHHHHHHH-HHHhchhHHHHHHHHHHHHHhhccCCccccccccCCCcchHHHHHHHHHHHHHHHHHHHHHH
Q 015791          196 GTGLAITLTLSLTSLAI-ALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQFSFFIHFQKY  274 (400)
Q Consensus       196 ~~a~~~~~~l~~lgl~l-~~~lg~~~l~~~l~~~~~l~~~Ys~~~pplrlKr~~~~g~l~i~~~~g~~~~~G~~~~~~~~  274 (400)
                      ++|+.+++++.++|+.+ ++.+|+.+..++++..++....||.      +||++.+ |..+|+..|...+++.+.+    
T Consensus        76 ~~A~~~~~~l~~~g~~~l~~~~n~l~~~l~~~~~~ly~~vYt~------lKR~t~~-~~~lG~~~Ga~ppL~Gw~A----  144 (341)
T PLN02776         76 PHAVAWAVVVGAAGVALLAYKTNMLTAGLGAGNILLYAFVYTP------LKQIHPA-NTWVGAVVGAIPPLMGWAA----  144 (341)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHh------HccCCch-hHHHHHHHHHHHHHHHHHH----
Confidence            99999999999988854 5668988877765433444678985      8999986 6678887775444332332    


Q ss_pred             hhcCCccchHHHHHHHHHHHHHHHHHHHHhhcCCchhhHhcCCccchhhh--chhhHHHHHHHHHHHHHHHHHHHHHhhh
Q 015791          275 VLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKL--GKENVLRLCVYALFFAYGVSVIVGASSS  352 (400)
Q Consensus       275 v~g~~~~~~~~l~~~~~~~~~~~~~~~ii~di~D~egD~~~GirTlpV~l--G~k~a~~l~~~l~~~ay~~~~~~g~~~~  352 (400)
                      + ++...+  ..+++...+.+|+........+.|+|+|+++|++++|+.-  |++.+..+....+.+..+..+.... ..
T Consensus       145 v-tg~~~~--~~~~Lf~~~~~Wq~pHf~~la~~~~dDy~~ag~pmlpv~~~~g~~ta~~i~~~~~~l~~~~ll~~~~-g~  220 (341)
T PLN02776        145 A-SGQLDA--GAMVLAAALYFWQMPHFMALAYMCRDDYAAGGYRMLSLADATGRRTALVALRNCLYLAPLGFLAYDW-GV  220 (341)
T ss_pred             H-cCCCCH--HHHHHHHHHHHHHHHHHHHHHHHhHHHHHhCCCcccCccccchHHHHHHHHHHHHHHHHHHHHHHHH-Hh
Confidence            2 222322  2334455556676655555567788899999999999976  4454444332222221111111111 11


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHccCCC-hHHHHHHHHHHHHHhh
Q 015791          353 FQLVKLVSIIGHSTLAFLLWLRAQTVDLSN-NASTYSFYMFIWKAIV  398 (400)
Q Consensus       353 ~~~~~~~~~~g~~~l~~~l~~~~~~~d~~~-~~~~~~f~~~i~~l~~  398 (400)
                      .++  +..+.+.++.+.+++...+-.+.+| +.+.+.|+..++++.-
T Consensus       221 ~~~--~~~~~a~~l~~~~l~~~~~~~~~~~~~~ar~~F~~Sl~yL~~  265 (341)
T PLN02776        221 TSS--PFALEAALLTAYLAASAASFYREPTNANARKMFHGSLLYLPA  265 (341)
T ss_pred             hhH--HHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHH
Confidence            111  2333444444455555666554444 4455667777777643

>COG0109 CyoE Polyprenyltransferase (cytochrome oxidase assembly factor) [Posttranslational modification, protein turnover, chaperones]

Probab=99.93  E-value=2.2e-24  Score=207.57  Aligned_cols=263  Identities=18%  Similarity=0.238  Sum_probs=182.8

Q ss_pred             HHHHHHHHHhhhccchHHHHHHHHHHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccCCC--C
Q 015791          108 LLKKLHALYVFTRPFAMIGTIVGITSIAILPLQSFADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADVEIDKVNKP--D  185 (400)
Q Consensus       108 ~~~~l~~y~~l~Rp~~~~~~~l~~l~g~~lA~~~~~~~~~~~l~~~ll~ll~~~l~~~a~~~iNd~~D~e~D~inkp--~  185 (400)
                      ...++++|+++++|+......++.+.|+++|.+  ...++..   ++.++++..+..++++++|++.|+|+|++++|  +
T Consensus        14 ~~~~~k~yl~LtKPrvi~L~~it~~~g~~lA~~--~~~~~~l---~~~~~~g~~L~a~~a~a~N~~~DrDID~~M~RT~~   88 (304)
T COG0109          14 SRSTIKDYLQLTKPRVISLLLITAFAGMLLAPR--GSINPLL---LLLTLLGGALGAGGAGAFNMYIDRDIDALMERTRK   88 (304)
T ss_pred             hHHHHHHHHHHhCCeeeehHHHHHHHHHHHccc--ccccHHH---HHHHHHHHHHHHHHHHHHhhhhhhhHHHhhhhccC
Confidence            467899999999999999999999999999975  2344432   56788999999999999999999999999875  9


Q ss_pred             CCcccCcCCHHHHHHHHHHHHHHHHHHH-HHhchhHHHHHHHHHHHHHhhccCCccccccccCCCcchHHHHHHHHHHHH
Q 015791          186 LPLASGDLSMGTGLAITLTLSLTSLAIA-LSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQ  264 (400)
Q Consensus       186 RPl~sG~is~~~a~~~~~~l~~lgl~l~-~~lg~~~l~~~l~~~~~l~~~Ys~~~pplrlKr~~~~g~l~i~~~~g~~~~  264 (400)
                      ||+++|++++++++.++.++.++|+.+. +..|+.+..++++..++..+.||.+     +||++.. |+.+|+..|..++
T Consensus        89 RP~~~G~i~p~~al~fgl~L~~~g~~~l~~~vn~laa~l~~~gi~~Yv~vYT~~-----lKR~T~~-NiviGg~aGa~Pp  162 (304)
T COG0109          89 RPLVTGLISPREALAFGLVLGVAGFSLLWFLVNLLAAVLGLFGIFFYVVVYTLW-----LKRRTPQ-NIVIGGFAGAMPP  162 (304)
T ss_pred             CCCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh-----ccCCccc-ceeeeeccccccc
Confidence            9999999999999999999999998887 7789888777777778899999985     8999986 7778877777666


Q ss_pred             -HHHHHHHHHHhhcCCccchHHHHHHHHHHHH----HHHHHHHHhhcCCchhhHhcCCccchhhhchhhHHHHHHHHHHH
Q 015791          265 -FSFFIHFQKYVLGRPVVITRPLIFAAAIIST----ISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFF  339 (400)
Q Consensus       265 -~G~~~~~~~~v~g~~~~~~~~l~~~~~~~~~----~~~~~~ii~di~D~egD~~~GirTlpV~lG~k~a~~l~~~l~~~  339 (400)
                       +|+.+     +.| ....+..+++..+|++.    |+++      +.-.||-+++|+..+|++-|++.+.+. +..+.+
T Consensus       163 liGwaA-----vtg-~~~~~a~~Lf~IiF~WtPpHfwALA------l~~~~DY~~AgiPMlPvv~G~~~t~~~-I~~y~~  229 (304)
T COG0109         163 LIGWAA-----VTG-SISLGAILLFAIIFLWTPPHFWALA------LKYKDDYKAAGIPMLPVVKGERRTKRQ-ILLYTL  229 (304)
T ss_pred             cceeee-----eeC-CCCchHHHHHHHHHHhccHHHHHHH------HHHHHHHHHcCCCcccccccHHHHHHH-HHHHHH
Confidence             45322     223 33334444555555543    3333      233455599999999999999988764 333322


Q ss_pred             HH-HHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHccC-CChHHHHHHHHHHHHHhhh
Q 015791          340 AY-GVSVIVGASSSFQLVKLVSIIGHSTLAFLLWLRAQTVDL-SNNASTYSFYMFIWKAIVL  399 (400)
Q Consensus       340 ay-~~~~~~g~~~~~~~~~~~~~~g~~~l~~~l~~~~~~~d~-~~~~~~~~f~~~i~~l~~~  399 (400)
                      .. ...++...   .+..++.+.+...++...+++...+.-. +|++..++  +|++.+.|+
T Consensus       230 ~l~~~sl~~~~---~g~~g~~Y~v~a~~l~~~~l~~a~~~~~~~~~~~A~k--lF~~S~~yL  286 (304)
T COG0109         230 ALAPVSLLLAL---LGYVGYLYLVVATLLGAWFLALAWKLYRKDDRKWARK--LFKYSIIYL  286 (304)
T ss_pred             HHHHHHHHHHH---hccchhHHHHHHHHHHHHHHHHHHHHHhCccHHHHHH--HHHHHHHHH
Confidence            22 22222222   1122233443334444444555555422 34333333  555555554

>PRK13592 ubiA prenyltransferase; Provisional

Probab=99.92  E-value=4.4e-23  Score=199.25  Aligned_cols=178  Identities=13%  Similarity=0.152  Sum_probs=125.3

Q ss_pred             HHHHHHHHHHHHHHHHhhhhhcccccccccCCCCCCcccCcCCHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHH
Q 015791          152 EFLKALLSAVLMNNYVGTVNQVADVEIDKVNKPDLPLASGDLSMGTGLAITLTLSLTSLAIALSLQSPPLIFGLIVWFLL  231 (400)
Q Consensus       152 ~~ll~ll~~~l~~~a~~~iNd~~D~e~D~inkp~RPl~sG~is~~~a~~~~~~l~~lgl~l~~~lg~~~l~~~l~~~~~l  231 (400)
                      +.+++++..++..++++++||++|+|+||+|+|+||+|||++|+++++.++.++.++++.++...     ...+ ...+.
T Consensus        47 ~~~l~~~~vf~~~~~gniiNDy~D~EIDrIN~P~RPLPsG~VS~~~A~~~si~L~~~~l~L~~l~-----~i~i-~~~~i  120 (299)
T PRK13592         47 QEFVGVFTVFGFWMILRIADDFKDYETDRRLFPHRALPSGRVKKKDLAIALSFIVAVSVLLNVLF-----MNNV-GWFLF  120 (299)
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHhhHHHhhhcCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHHHH-----HHHH-HHHHH
Confidence            35667777889999999999999999999999999999999999999999988877777666544     1111 22334


Q ss_pred             Hhhc-----cCCccccccccCCCcchHHHHHHHHHHHHH--HHHHHH-HHHhhcCCccchHHHHHHHHHHHHHHHHHHHH
Q 015791          232 GTAY-----SVDLPFLRWKTKPFLAGMCMVTVFGLVYQF--SFFIHF-QKYVLGRPVVITRPLIFAAAIISTISAVMSLL  303 (400)
Q Consensus       232 ~~~Y-----s~~~pplrlKr~~~~g~l~i~~~~g~~~~~--G~~~~~-~~~v~g~~~~~~~~l~~~~~~~~~~~~~~~ii  303 (400)
                      .+.|     +.     ++|+.++.||+.++...|..+..  +.+.+. +....|.+. .....+.+.+...+.++++|+.
T Consensus       121 ~~lY~~lm~a~-----~~K~~~l~gNl~Va~ltg~~f~~g~~~~~~~fg~~~~g~~~-~~~~~~~l~l~afl~~l~rEI~  194 (299)
T PRK13592        121 LYIYGTLMSFW-----FFKRDKIQNSLPLALVTHNPVMMILNLYTISFVCYKYNLPL-LSLPTVLLAFTMYFPSLIWEVC  194 (299)
T ss_pred             HHHHHHHHHHH-----HHcccCCCcchhhhhhccchhhhchhhhhhhhhhhhcccch-hhHHHHHHHHHHHHHHHHHHHH
Confidence            5556     65     48999999999998877754432  322210 001122211 1110122223333347899999


Q ss_pred             hhcCCchhhHhcCCccchhhhchhhHHHHHHHHHHHHHHH
Q 015791          304 KDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYGV  343 (400)
Q Consensus       304 ~di~D~egD~~~GirTlpV~lG~k~a~~l~~~l~~~ay~~  343 (400)
                      +|++| |||++ |.+|+|+++|.|++.++..++..++.+.
T Consensus       195 KdieD-~gd~~-~~~Tlpi~~G~kkA~~ia~~l~ii~v~~  232 (299)
T PRK13592        195 RKIRA-PKDET-EYVTYSKLFGYKKATRFIEVVTLLDILT  232 (299)
T ss_pred             HhhcC-Ccccc-CCeeechhccchhHHHHHHHHHHHHHHH
Confidence            99999 88886 5999999999999988877776555443

>PRK08238 hypothetical protein; Validated

Probab=99.87  E-value=3.9e-20  Score=191.95  Aligned_cols=191  Identities=24%  Similarity=0.265  Sum_probs=142.8

Q ss_pred             HHHHHHHHHHHhhhccchHHHHHHHHHHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccC--C
Q 015791          106 DVLLKKLHALYVFTRPFAMIGTIVGITSIAILPLQSFADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADVEIDKVN--K  183 (400)
Q Consensus       106 ~~~~~~l~~y~~l~Rp~~~~~~~l~~l~g~~lA~~~~~~~~~~~l~~~ll~ll~~~l~~~a~~~iNd~~D~e~D~in--k  183 (400)
                      .+.+.++++|++++|||++.++++.+ ++.+.+.. ..  ++..+...++++++..++.+++|++||++|+|+||.|  |
T Consensus       185 ~~~~~~~~~~~~l~Rp~q~~kn~l~~-~p~l~a~~-~~--~~~~~~~~~~~f~~~~l~~sa~~~~ND~~D~e~Dr~~~rk  260 (479)
T PRK08238        185 PPRPARLRTWLKALRVHQWAKNLLVF-VPLLAAHQ-FG--DLQALLAALLAFLAFSLCASAVYILNDLLDLEADRAHPRK  260 (479)
T ss_pred             CCCchHHHHHHHHhCCcHHHHHHHHH-HHHHHhcc-cC--ChHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhhccCCCC
Confidence            33456899999999999999998864 47766632 21  2222223567788888999999999999999999998  5


Q ss_pred             CCCCcccCcCCHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHhhccCCccccccccCCCcchHHHHHHHHHHH
Q 015791          184 PDLPLASGDLSMGTGLAITLTLSLTSLAIALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVY  263 (400)
Q Consensus       184 p~RPl~sG~is~~~a~~~~~~l~~lgl~l~~~lg~~~l~~~l~~~~~l~~~Ys~~~pplrlKr~~~~g~l~i~~~~g~~~  263 (400)
                      |+||++||++|+++|+.++.+++++|+.+++.+|+..+.. ++..+++.++||.     ++||++++++++++..++.-+
T Consensus       261 ~~RPlasG~is~~~A~~~~~~l~~~~~~l~~~l~~~~~~~-~~~~~~~~~~Ys~-----~lKr~~~~~~~~la~~~~lr~  334 (479)
T PRK08238        261 RRRPFASGALPIPFGLAAAPLLLLAGLALALALGPAFLLV-LLAYLALTLAYSL-----RLKRKVLVDVLTLAALYTLRI  334 (479)
T ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHH-HHHHHHHHHHhhH-----HhcCCccccchHHHHHHHHHH
Confidence            7999999999999999999999999999999888854444 3467788899996     489999999998887776655


Q ss_pred             HHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHHHHHHhhcCCchhhHhcCC
Q 015791          264 QFSFFIHFQKYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGF  317 (400)
Q Consensus       264 ~~G~~~~~~~~v~g~~~~~~~~l~~~~~~~~~~~~~~~ii~di~D~egD~~~Gi  317 (400)
                      ..|...      .+.  ..+.  |++ ++..++.+...+.|...|.++++..|.
T Consensus       335 ~~G~~a------~~~--~~s~--wll-~~~~~~~l~la~~KR~~El~~~~~~~~  377 (479)
T PRK08238        335 IAGAAA------IGV--ALSF--WLL-AFSMFFFLSLALVKRYTELRRALQRGK  377 (479)
T ss_pred             HHHHHH------hcc--CHHH--HHH-HHHHHHHHHHHHHHhHHHHHHHHhcCC
Confidence            555422      121  1222  221 222233455678888889988888876

>PRK12324 phosphoribose diphosphate:decaprenyl-phosphate phosphoribosyltransferase; Provisional

Probab=99.86  E-value=1.6e-19  Score=176.44  Aligned_cols=149  Identities=26%  Similarity=0.346  Sum_probs=116.1

Q ss_pred             HHHHHHHHHhhhccchHHHHHHHHHHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccC--CCC
Q 015791          108 LLKKLHALYVFTRPFAMIGTIVGITSIAILPLQSFADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADVEIDKVN--KPD  185 (400)
Q Consensus       108 ~~~~l~~y~~l~Rp~~~~~~~l~~l~g~~lA~~~~~~~~~~~l~~~ll~ll~~~l~~~a~~~iNd~~D~e~D~in--kp~  185 (400)
                      ..+++++|++++||++++..++.+. +.+++.... +..  .+...++++++..++.+++|++||++|+|+||.|  ||+
T Consensus         7 ~~~~l~~~l~L~RP~~w~~nll~~~-~~~~a~~~~-~~~--~~~~~llafl~~~l~~sa~y~iND~~D~e~Dr~~prk~~   82 (295)
T PRK12324          7 PKNLLAGYLKLLRPKQWIKNLFVFA-APIFAGNLL-NPG--ALLKVLLAFVLFCLASSAVYLVNDIRDVEADRLHPTKRN   82 (295)
T ss_pred             hHHHHHHHHHHhCchHHHHHHHHHH-HHHHHHhhc-ccc--hHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhccCCCCCC
Confidence            4567899999999999999887544 444443211 111  1223456677778889999999999999999986  689


Q ss_pred             CCcccCcCCHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHhhccCCccccccccCCCcchHHHHHHHHHHHHH
Q 015791          186 LPLASGDLSMGTGLAITLTLSLTSLAIALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQF  265 (400)
Q Consensus       186 RPl~sG~is~~~a~~~~~~l~~lgl~l~~~lg~~~l~~~l~~~~~l~~~Ys~~~pplrlKr~~~~g~l~i~~~~g~~~~~  265 (400)
                      ||+++|++|+++|+.++.++.++|+.+++.+|+..+.+. +..+++.++||.     ++||++.+++++++..++.-+..
T Consensus        83 RPlasG~is~~~A~~~~~~l~~~~l~la~~l~~~~~~~~-~~~~~~~~~Ys~-----~lK~~~~~d~l~va~~~~lr~~~  156 (295)
T PRK12324         83 RPIASGVVSVSLAYILAVVLLVASLALAYLLSPKLALVL-LVYLVLNLAYSF-----KLKHQPVLDVFCIASGFVLRAIA  156 (295)
T ss_pred             CCCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhH-----HhcCCchhhHHHHHHHHHHHHHH
Confidence            999999999999999999999999999988887766654 457788899996     48999999988887666654444


Q ss_pred             H
Q 015791          266 S  266 (400)
Q Consensus       266 G  266 (400)
                      |
T Consensus       157 G  157 (295)
T PRK12324        157 G  157 (295)
T ss_pred             H
Confidence            4

>KOG4581 consensus Predicted membrane protein [Function unknown]

Probab=99.38  E-value=1e-12  Score=121.32  Aligned_cols=231  Identities=16%  Similarity=0.155  Sum_probs=156.7

Q ss_pred             HHHHHHHHHhhhccchHHHHHHHHHHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhcccc--cccccCCCC
Q 015791          108 LLKKLHALYVFTRPFAMIGTIVGITSIAILPLQSFADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADV--EIDKVNKPD  185 (400)
Q Consensus       108 ~~~~l~~y~~l~Rp~~~~~~~l~~l~g~~lA~~~~~~~~~~~l~~~ll~ll~~~l~~~a~~~iNd~~D~--e~D~inkp~  185 (400)
                      ...+.+.|.-..||+....++.+...|.++|+......++... .++++.++.+..+.++|.+|.|+|.  .+|+....+
T Consensus        57 ~~~k~~syllalrpws~sasl~p~~lgsalayrs~~~~d~~l~-~~fl~a~avlavh~agnlvntyfdf~kgid~kkadd  135 (359)
T KOG4581|consen   57 TFMKCASYLLALRPWSFSASLTPTALGSALAYRSHGAEDFRLA-TFFLCAFAVLAVHCAGNLVNTYFDFIKGIDHKKADD  135 (359)
T ss_pred             HHHHHHHHHhhhcccccccccchHhhhhHHHHhhccccchhHH-HHHHHHhhheeeecccchhhhhhhhhhccccccccc
Confidence            4578899999999999999999999999999754332233222 2456777888899999999999997  478877779


Q ss_pred             CCcccCcCCHHHHHHHHHHHHHHHHHH---HHHhchhH---HHHHHHHHHHHHhhccCCccccccccCCCcchHHHHHHH
Q 015791          186 LPLASGDLSMGTGLAITLTLSLTSLAI---ALSLQSPP---LIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVF  259 (400)
Q Consensus       186 RPl~sG~is~~~a~~~~~~l~~lgl~l---~~~lg~~~---l~~~l~~~~~l~~~Ys~~~pplrlKr~~~~g~l~i~~~~  259 (400)
                      |.++...+.+.+...+++++...|...   ...++|.-   +.+.-+.++--.++|+.   -+.+|+..+ |.+++.+.+
T Consensus       136 rtlvd~il~~~dvv~~g~~ly~~gc~~~~~l~~lsp~klehlaliyfggls~sflytg---gigfkyial-gdliili~f  211 (359)
T KOG4581|consen  136 RTLVDHILEKDDVVRFGAFLYMAGCGCAACLAVLSPAKLEHLALIYFGGLSGSFLYTG---GIGFKYIAL-GDLIILILF  211 (359)
T ss_pred             hhHHHHhcChhheehhhHHHHHhcchHHHHHHhCCHhhhhhhhhhhccCcccceeEec---ccceEEEec-cCEEEEEee
Confidence            999999999999988888887665433   22344321   11111235555678885   355777665 777676666


Q ss_pred             HHHHHHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHHHHHHhhcCCchhhHhcCCccchhhhchhhHHHHHHHHHHH
Q 015791          260 GLVYQFSFFIHFQKYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFF  339 (400)
Q Consensus       260 g~~~~~G~~~~~~~~v~g~~~~~~~~l~~~~~~~~~~~~~~~ii~di~D~egD~~~GirTlpV~lG~k~a~~l~~~l~~~  339 (400)
                      |.+.++=.|+ .++   | ...+.+ + --.+.+.+-+-++.+-|+-+|.|.||++|+-|+++.+|+..+-.++..++..
T Consensus       212 gpiavlfaf~-~q~---g-~l~~~~-l-~yaiplalnteailhsnntrd~dndr~agivtlailig~t~s~ily~~llf~  284 (359)
T KOG4581|consen  212 GPIAVLFAFA-IQT---G-HLAIFP-L-GYAIPLALNTEAILHSNNTRDADNDREAGIVTLAILIGPTASHILYAMLLFA  284 (359)
T ss_pred             chHHHHHHHH-Hhc---C-ceeEEe-e-hheeeeccchHHHhccCCCcccccccccCeEEEEEeecccHHHHHHHHHHHH
Confidence            6544322222 121   2 221111 1 0011222234466788999999999999999999999998887777777777


Q ss_pred             HHHHHHHHHHh
Q 015791          340 AYGVSVIVGAS  350 (400)
Q Consensus       340 ay~~~~~~g~~  350 (400)
                      .|.+..+.+.-
T Consensus       285 py~lf~i~~~~  295 (359)
T KOG4581|consen  285 PYLLFFIFALH  295 (359)
T ss_pred             HHHHHHHHHHH
Confidence            88776655443

>KOG1380 consensus Heme A farnesyltransferase [Coenzyme transport and metabolism]

Probab=99.36  E-value=5.8e-13  Score=128.36  Aligned_cols=210  Identities=12%  Similarity=0.123  Sum_probs=141.7

Q ss_pred             HHHHHHHhhhccchHHHHHHHHHHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccCCC--CCC
Q 015791          110 KKLHALYVFTRPFAMIGTIVGITSIAILPLQSFADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADVEIDKVNKP--DLP  187 (400)
Q Consensus       110 ~~l~~y~~l~Rp~~~~~~~l~~l~g~~lA~~~~~~~~~~~l~~~ll~ll~~~l~~~a~~~iNd~~D~e~D~inkp--~RP  187 (400)
                      ..++.|+|+.+|+-....+++...|+++|.++   +++.   .++.+.+|..+..+++|++||+++.+.|..+++  .||
T Consensus        92 k~~~~y~eLsK~rLT~LVV~tt~~gYalap~p---~s~~---~l~~~tvGT~L~S~sANaiNQ~~E~~~DsqM~RT~~Rp  165 (409)
T KOG1380|consen   92 KYARCYLELSKPRLTMLVVLTTMTGYALAPGP---FSFP---TLLYTTVGTGLCSASANAINQIFEPPFDSQMKRTQNRP  165 (409)
T ss_pred             chHHHHHHhcccceEEEEeeeccccccccccC---CCcc---hhHHHhhhhHHHHhhhHhhhhhccCCchhhhHhhcccc
Confidence            46789999999998777777788899988654   3332   256778899999999999999999999998764  999


Q ss_pred             cccCcCCHHHHHHHHHHHHHHHHHHHHH-hchhHHHHHHHHHHHHHhhccCCccccccccCCCcchHHHHHHHHHHHH-H
Q 015791          188 LASGDLSMGTGLAITLTLSLTSLAIALS-LQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQ-F  265 (400)
Q Consensus       188 l~sG~is~~~a~~~~~~l~~lgl~l~~~-lg~~~l~~~l~~~~~l~~~Ys~~~pplrlKr~~~~g~l~i~~~~g~~~~-~  265 (400)
                      +++|++++..|+.++.+....|+.+..+ +|+....++..=.++.+++|+-      +||..+ .|..++.+-|.+++ +
T Consensus       166 lv~g~isp~hA~~fAt~~g~~G~slL~~gvNpl~a~Lga~Ni~LY~~vYTP------lKrihi-inTWvGavVGAIPPLM  238 (409)
T KOG1380|consen  166 LVRGRISPLHAVTFATLTGTAGVSLLAFGVNPLAAALGAGNIFLYAGVYTP------LKRIHI-INTWVGAVVGAIPPLM  238 (409)
T ss_pred             cccCccChHHHHHHHHHhccccceeeeecccHHHHHHhhcchheeeccccc------hhhhhh-hhhHHHHHhccCCccc
Confidence            9999999999999999888888766554 7877666665434566788884      898876 47777777776665 5


Q ss_pred             HHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHHHHHHhhcCCchhhHhcCCccchhhh---chhhHHHHHHHHHHHH
Q 015791          266 SFFIHFQKYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKL---GKENVLRLCVYALFFA  340 (400)
Q Consensus       266 G~~~~~~~~v~g~~~~~~~~l~~~~~~~~~~~~~~~ii~di~D~egD~~~GirTlpV~l---G~k~a~~l~~~l~~~a  340 (400)
                      |+-..     .|. ......++..+++.+.|---..+-.+++  ++-.+.|.+.+++.=   -++.+.+.+..++.+.
T Consensus       239 GwAAa-----sg~-l~~ga~iLa~~LyaWQfPHFnaLS~~lR--~DYs~~GY~Mma~~np~l~rr~alr~s~a~~~L~  308 (409)
T KOG1380|consen  239 GWAAA-----SGL-LDPGAMILAGILYAWQFPHFNALSWNLR--NDYSKAGYRMMAVTNPGLCRRVALRYSLAFLPLS  308 (409)
T ss_pred             hhhhh-----ccC-CCccHHHHHHHHHHhcccchhhhhhhhc--hhhhhccEEEEEeeccchhhHHHHHHHHHHhhhh
Confidence            64221     122 1111112222333332211122333332  244899999998852   3344445554444444

>COG1575 MenA 1,4-dihydroxy-2-naphthoate octaprenyltransferase [Coenzyme metabolism]

Probab=92.26  E-value=0.81  Score=45.19  Aligned_cols=46  Identities=15%  Similarity=0.047  Sum_probs=31.3

Q ss_pred             HHHHHHHHHHHHHhhhhhcccccccccCCCCCCcccCcCCHHHHHHHH
Q 015791          155 KALLSAVLMNNYVGTVNQVADVEIDKVNKPDLPLASGDLSMGTGLAIT  202 (400)
Q Consensus       155 l~ll~~~l~~~a~~~iNd~~D~e~D~inkp~RPl~sG~is~~~a~~~~  202 (400)
                      +..+......+..+..|++.|.|+|+.|+++.+..  ++..+.+..+.
T Consensus       180 l~slp~gil~~~Il~aNNirDie~D~~~gk~TLav--rLG~~~~~~l~  225 (303)
T COG1575         180 LPSLPVGILIANILLANNLRDIEEDIRNGKYTLAV--RLGRKNARKLY  225 (303)
T ss_pred             HHHHHHHHHHHHHHHhcccccchhHHhcCCcceee--eeccHhHHHHH
Confidence            34455666777788899999999999998755433  34445554443

>PRK13591 ubiA prenyltransferase; Provisional

Probab=90.16  E-value=0.95  Score=44.89  Aligned_cols=66  Identities=26%  Similarity=0.333  Sum_probs=38.3

Q ss_pred             hhhhcccccccccCC-CCCCcccCcCCHHHHHHHHHHHHHHH---HHHHHHhc-----hhHHHHHHHHHHHHHhhccC
Q 015791          169 TVNQVADVEIDKVNK-PDLPLASGDLSMGTGLAITLTLSLTS---LAIALSLQ-----SPPLIFGLIVWFLLGTAYSV  237 (400)
Q Consensus       169 ~iNd~~D~e~D~ink-p~RPl~sG~is~~~a~~~~~~l~~lg---l~l~~~lg-----~~~l~~~l~~~~~l~~~Ys~  237 (400)
                      .+||+-|.|.|+.+. +.-|+.=|   ++.+..+...+.+++   .+++...|     |...+.+++.+++..+.|+.
T Consensus       197 iindirDiEGDr~~G~kTLPV~lG---~~~A~~l~~~l~~~~~l~li~~~~~g~l~~~~~~~~~s~~~~l~~~~~~~~  271 (307)
T PRK13591        197 CVYDFKDVKGDTLAGIKTLPVSLG---EQKTRNLLLGIHLFSHLVLGIALIFGVIAFEPIILLYSFVCGLICIQVYSS  271 (307)
T ss_pred             HHHHhhhhHhHHHcCCeeEEEEEC---HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHcC
Confidence            689999999999875 45666555   344433332222221   22222222     33344456678888899985

>PRK12872 ubiA prenyltransferase; Reviewed

Probab=89.98  E-value=3.3  Score=40.18  Aligned_cols=35  Identities=23%  Similarity=0.285  Sum_probs=25.3

Q ss_pred             HHHHHHHHHHhhhhhcccccccccCC-CCCCcccCc
Q 015791          158 LSAVLMNNYVGTVNQVADVEIDKVNK-PDLPLASGD  192 (400)
Q Consensus       158 l~~~l~~~a~~~iNd~~D~e~D~ink-p~RPl~sG~  192 (400)
                      +..++.......+||.-|+|.|+.++ +.-|..-|+
T Consensus       168 ~~~fl~~~~~~~~~d~~D~e~D~~~G~~Tlpv~lG~  203 (285)
T PRK12872        168 VFIFLKSFIREIVFDIKDIEGDRKSGLKTLPIVLGK  203 (285)
T ss_pred             HHHHHHHHHHHHHHhcccchhHHHcCCcccchhcch
Confidence            34445566667889999999999754 566766564

>PRK07419 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional

Probab=87.21  E-value=5.8  Score=39.36  Aligned_cols=39  Identities=15%  Similarity=0.100  Sum_probs=25.9

Q ss_pred             HHHHHHhhhhhcccccccccCCC-CCCcccCcCCHHHHHHHHH
Q 015791          162 LMNNYVGTVNQVADVEIDKVNKP-DLPLASGDLSMGTGLAITL  203 (400)
Q Consensus       162 l~~~a~~~iNd~~D~e~D~inkp-~RPl~sG~is~~~a~~~~~  203 (400)
                      +........||+-|+|.|+.+.+ .-|.   ++.++.+..+..
T Consensus       185 ll~~~IL~~Nn~rD~e~D~~~Gk~TL~v---~lG~~~a~~ly~  224 (304)
T PRK07419        185 LATSLILFCSHFHQVEDDLAAGKRSPIV---RLGTKRGAQLLP  224 (304)
T ss_pred             HHHHHHHHHcCCcchhhHHHcCCcceee---eechHhHHHHHH
Confidence            55667778899999999998764 4444   334555544433

>PRK13592 ubiA prenyltransferase; Provisional

Probab=86.99  E-value=13  Score=36.76  Aligned_cols=45  Identities=13%  Similarity=0.272  Sum_probs=29.1

Q ss_pred             HHHHHHHHhhcCCchhhHhcCCccchhhhc---hhhHHHHHHHHHHHHH
Q 015791          296 ISAVMSLLKDIPDEDGDKQFGFQSISSKLG---KENVLRLCVYALFFAY  341 (400)
Q Consensus       296 ~~~~~~ii~di~D~egD~~~GirTlpV~lG---~k~a~~l~~~l~~~ay  341 (400)
                      ...+-.++||+.|+|-|+.. +..=|+-=|   ++.++.++..+..++.
T Consensus        58 ~~~~gniiNDy~D~EIDrIN-~P~RPLPsG~VS~~~A~~~si~L~~~~l  105 (299)
T PRK13592         58 FWMILRIADDFKDYETDRRL-FPHRALPSGRVKKKDLAIALSFIVAVSV  105 (299)
T ss_pred             HHHHhHHHHHHhhHHHhhhc-CCCCCCCcCCCCHHHHHHHHHHHHHHHH
Confidence            34556889999999999665 666666555   3555555544433333

>TIGR01474 ubiA_proteo 4-hydroxybenzoate polyprenyl transferase, proteobacterial

Probab=86.37  E-value=7.3  Score=38.02  Aligned_cols=36  Identities=25%  Similarity=0.176  Sum_probs=27.6

Q ss_pred             HHHHHHHHHHHhhhhhcccccccccC-CCCCCcccCc
Q 015791          157 LLSAVLMNNYVGTVNQVADVEIDKVN-KPDLPLASGD  192 (400)
Q Consensus       157 ll~~~l~~~a~~~iNd~~D~e~D~in-kp~RPl~sG~  192 (400)
                      .++.++....-..+|++.|+|.|+.. .|.-|+.-|+
T Consensus       166 ~~~~~lw~~~~~~~~a~~D~e~D~~~G~~tlpv~~G~  202 (281)
T TIGR01474       166 YLANILWTLGYDTIYAMQDKEDDIKIGVKSTALRFGD  202 (281)
T ss_pred             HHHHHHHHHHHHHHHHHhhHHhHHHcCCCcccHHhhh
Confidence            44556666777889999999999964 4777877774

A fairly deep split by both clustering (UPGMA) and phylogenetics (NJ tree) separates this group (mostly Proteobacterial and mitochondrial), with several characterized members, from another group (mostly archaeal and Gram-positive bacterial) lacking characterized members.

>PRK13387 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional

Probab=86.15  E-value=3.2  Score=41.35  Aligned_cols=50  Identities=16%  Similarity=0.173  Sum_probs=32.3

Q ss_pred             HHHHHHHHHHHHhhhhhcccccccccCCC-CCCcccCcCCHHHHHHHHHHHHHH
Q 015791          156 ALLSAVLMNNYVGTVNQVADVEIDKVNKP-DLPLASGDLSMGTGLAITLTLSLT  208 (400)
Q Consensus       156 ~ll~~~l~~~a~~~iNd~~D~e~D~inkp-~RPl~sG~is~~~a~~~~~~l~~l  208 (400)
                      ..+...+........||+-|+|.|+.+.+ .-|..   +.++.+..+..++..+
T Consensus       194 ~slp~g~l~~~ill~Nn~~D~e~D~~~gk~TL~v~---lG~~~a~~l~~~l~~~  244 (317)
T PRK13387        194 ISLPIIFTIANIMLANNLRDLDEDIKNHRYTLVYY---IGREKGVVLFAILFYA  244 (317)
T ss_pred             HHHHHHHHHHHHHHhcCCccchhHHHcCCeeeeee---EcHHhHHHHHHHHHHH
Confidence            44555666777789999999999998754 44443   4455555544443333

>PLN00012 chlorophyll synthetase; Provisional

Probab=85.31  E-value=9  Score=39.19  Aligned_cols=33  Identities=24%  Similarity=0.256  Sum_probs=25.2

Q ss_pred             HHHHHHHHhhhhhcccccccccC-CCCCCcccCc
Q 015791          160 AVLMNNYVGTVNQVADVEIDKVN-KPDLPLASGD  192 (400)
Q Consensus       160 ~~l~~~a~~~iNd~~D~e~D~in-kp~RPl~sG~  192 (400)
                      .++...+....||+-|+|.|+.. ++.-|+.-|+
T Consensus       261 ~~l~~lai~ivnd~~Die~Dr~aG~~TLpV~~G~  294 (375)
T PLN00012        261 YSIAGLGIAIVNDFKSIEGDRALGLQSLPVAFGV  294 (375)
T ss_pred             HHHHHHHHHHHhhhcchhhHHHcCCcccceeech
Confidence            34566667889999999999864 5777776664

>PRK13105 ubiA prenyltransferase; Reviewed

Probab=84.30  E-value=5.1  Score=39.33  Aligned_cols=57  Identities=16%  Similarity=0.159  Sum_probs=39.0

Q ss_pred             HHHHHHHHHHhhhhhcccccccccCC-CCCCcccCcCCHHHHHHHHHHHHHHHHHHHHHhc
Q 015791          158 LSAVLMNNYVGTVNQVADVEIDKVNK-PDLPLASGDLSMGTGLAITLTLSLTSLAIALSLQ  217 (400)
Q Consensus       158 l~~~l~~~a~~~iNd~~D~e~D~ink-p~RPl~sG~is~~~a~~~~~~l~~lgl~l~~~lg  217 (400)
                      ++..+...+...+||+-|.|.||.+. +.-|.   ++.++.+..+..++.+++.++....+
T Consensus       167 ~~~~~~~~a~~ii~~irDie~Dr~~G~~Tlpv---~lG~~~a~~~~~~l~~~a~~~~~~~~  224 (282)
T PRK13105        167 AAFFLWGMASHAFGAVQDVVADREAGIASIAT---VLGARRTVRLAVGLYAAAAVLMLALP  224 (282)
T ss_pred             HHHHHHHHHHHHHHhCcchHhHHHcCCccchH---HhcHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444577788999999999999764 34444   45577787777777766665544444

>PRK12847 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed

Probab=84.11  E-value=10  Score=36.94  Aligned_cols=36  Identities=11%  Similarity=0.059  Sum_probs=26.1

Q ss_pred             HHHHHHHHHHHhhhhhcccccccccCC-CCCCcccCc
Q 015791          157 LLSAVLMNNYVGTVNQVADVEIDKVNK-PDLPLASGD  192 (400)
Q Consensus       157 ll~~~l~~~a~~~iNd~~D~e~D~ink-p~RPl~sG~  192 (400)
                      .+..++....-..+|++.|+|.|+.++ |.-|+.-|+
T Consensus       171 ~~~~~~w~~~~~~~~a~~D~e~D~~~G~~tl~v~~G~  207 (285)
T PRK12847        171 YIGCIFWTIGYDTIYAYQDKKDDLKIGVKSTAIYFGN  207 (285)
T ss_pred             HHHHHHHHHHHHHHHHhccHhhHHHcCCchhHHHhcc
Confidence            345556666667889999999999754 667776664

>PRK12875 ubiA prenyltransferase; Reviewed

Probab=83.88  E-value=26  Score=34.31  Aligned_cols=57  Identities=16%  Similarity=0.059  Sum_probs=37.1

Q ss_pred             HHHHHHHHHHhhhhhcccccccccCC-CCCCcccCcCCHHHHHHHHHHHHHHHHHHHHHhc
Q 015791          158 LSAVLMNNYVGTVNQVADVEIDKVNK-PDLPLASGDLSMGTGLAITLTLSLTSLAIALSLQ  217 (400)
Q Consensus       158 l~~~l~~~a~~~iNd~~D~e~D~ink-p~RPl~sG~is~~~a~~~~~~l~~lgl~l~~~lg  217 (400)
                      ++..+...+...+|++-|+|.|+..+ +.-|.   ++..+.+..+..++.+++..+-+..+
T Consensus       172 ~a~~l~~~~~~~in~i~Die~D~~aGi~Tlav---~lG~~~a~~~~~~~~~~a~~~~~~~~  229 (282)
T PRK12875        172 AGGWLWAMGMHTFSAIPDIEPDRAAGIRTTAT---VLGERRTYAYCAACWLLAAAAFAAVD  229 (282)
T ss_pred             HHHHHHHHHHHHHHhccCHHHHHHcCCccchh---hccHhhHHHHHHHHHHHHHHHHHHHH
Confidence            34456677778999999999999654 55555   34456666666666555554444344

>PLN02922 prenyltransferase

Probab=83.77  E-value=4.8  Score=40.09  Aligned_cols=44  Identities=9%  Similarity=0.049  Sum_probs=28.3

Q ss_pred             HHHHHHHHHHhhhhhcccccccccCCC-CCCcccCcCCHHHHHHHHHH
Q 015791          158 LSAVLMNNYVGTVNQVADVEIDKVNKP-DLPLASGDLSMGTGLAITLT  204 (400)
Q Consensus       158 l~~~l~~~a~~~iNd~~D~e~D~inkp-~RPl~sG~is~~~a~~~~~~  204 (400)
                      +...+........||+-|+|.|+.+++ .-|..   +.++.+..+...
T Consensus       195 lp~gll~~~iL~~Nn~rD~e~D~~~Gk~TL~v~---lG~~~a~~l~~~  239 (315)
T PLN02922        195 VLVGLTTTLILFCSHFHQIDGDRAVGKMSPLVR---LGTEKGSRVVRW  239 (315)
T ss_pred             HHHHHHHHHHHHHccCcchhhHHHcCccceeeE---EChHHHHHHHHH
Confidence            334455667788999999999998765 34443   345555444333

>TIGR01475 ubiA_other putative 4-hydroxybenzoate polyprenyltransferase

Probab=83.17  E-value=7.2  Score=37.95  Aligned_cols=36  Identities=17%  Similarity=0.154  Sum_probs=26.0

Q ss_pred             HHHHHHHHHHHhhhhhcccccccccC-CCCCCcccCc
Q 015791          157 LLSAVLMNNYVGTVNQVADVEIDKVN-KPDLPLASGD  192 (400)
Q Consensus       157 ll~~~l~~~a~~~iNd~~D~e~D~in-kp~RPl~sG~  192 (400)
                      .+..++....-..+||..|+|.|+.. .|.-|+.-|+
T Consensus       164 ~~~~~~w~~~~~~i~~~~D~e~D~~~G~~tlpv~~G~  200 (282)
T TIGR01475       164 GIGVGFWIAGFDLIYAIQDYEFDRKNGLHSIPARFGI  200 (282)
T ss_pred             HHHHHHHHHHHHHHHHHhhHHhHHHcCCCchHHHhch
Confidence            33455556667789999999999864 4677776663

A fairly deep split separates this polyprenyltransferase subfamily from the set of mitochondrial and proteobacterial 4-hydroxybenzoate polyprenyltransferases, described in TIGR01474. Protoheme IX farnesyltransferase (heme O synthase) (TIGR01473) is more distantly related. Because no species appears to have both this protein and a member of TIGR01474, it is likely that This model represents 4-hydroxybenzoate polyprenyltransferase, a critical enzyme of ubiquinone biosynthesis, in the Archaea, Gram-positive bacteria, Aquifex aeolicus, the Chlamydias, etc.

>TIGR02235 menA_cyano-plnt 1,4-dihydroxy-2-naphthoate phytyltransferase

Probab=82.17  E-value=14  Score=36.35  Aligned_cols=46  Identities=13%  Similarity=-0.015  Sum_probs=29.6

Q ss_pred             HHHHHHHHHhhhhhcccccccccCCC-CCCcccCcCCHHHHHHHHHHHHH
Q 015791          159 SAVLMNNYVGTVNQVADVEIDKVNKP-DLPLASGDLSMGTGLAITLTLSL  207 (400)
Q Consensus       159 ~~~l~~~a~~~iNd~~D~e~D~inkp-~RPl~sG~is~~~a~~~~~~l~~  207 (400)
                      ...+........||+-|+|.|+.+.+ .-|+   ++.++.+..+...+..
T Consensus       169 ~~gl~~~~iL~~Nn~rD~e~D~~~Gk~TL~v---~lG~~~a~~l~~~l~~  215 (285)
T TIGR02235       169 LVGLATTLILFCSHFHQVEDDLAHGKRSPVV---RLGTKLAAKIVPWVIS  215 (285)
T ss_pred             HHHHHHHHHHHhcCCccchhHHHcCCcceeh---eecHHhHHHHHHHHHH
Confidence            33456677788899999999998754 4444   3445665554444333

This family of phytyltransferases, found in plants and cyanobacteria, are involved in the biosythesis of phylloquinone (Vitamin K1). Phylloquinone is a critical component of photosystem I. The closely related MenA enzyme from bacteria transfers a prenyl group (which only differs in the saturation of the isoprenyl groups) in the biosynthesis of menaquinone. Activity towards both substrates in certain organisms should be considered a possibility.

>PRK13595 ubiA prenyltransferase; Provisional

Probab=82.13  E-value=27  Score=34.46  Aligned_cols=23  Identities=17%  Similarity=0.234  Sum_probs=17.6

Q ss_pred             HHHHHHHHhhcCCchhhHhcCCc
Q 015791          296 ISAVMSLLKDIPDEDGDKQFGFQ  318 (400)
Q Consensus       296 ~~~~~~ii~di~D~egD~~~Gir  318 (400)
                      .......+||+-|+|.|+++-++
T Consensus        59 ~n~~~~giND~fD~eiDa~Npr~   81 (292)
T PRK13595         59 FNLLIYGLNDLADRETDAASPRK   81 (292)
T ss_pred             HHHHHHHHHhhhhhhhhccCCCC
Confidence            35566789999999999866443

>PRK06080 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Validated

Probab=81.47  E-value=15  Score=35.87  Aligned_cols=47  Identities=23%  Similarity=0.239  Sum_probs=28.9

Q ss_pred             HHHHHHHHHHhhhhhcccccccccCC-CCCCcccCcCCHHHHHHHHHHHHH
Q 015791          158 LSAVLMNNYVGTVNQVADVEIDKVNK-PDLPLASGDLSMGTGLAITLTLSL  207 (400)
Q Consensus       158 l~~~l~~~a~~~iNd~~D~e~D~ink-p~RPl~sG~is~~~a~~~~~~l~~  207 (400)
                      +...+........||+-|+|.|+.+. +.-|..=|   .+.+..+...+..
T Consensus       175 l~~~l~~~~~~~~n~~~D~~~D~~~G~~Tl~v~lG---~~~a~~~~~~l~~  222 (293)
T PRK06080        175 LPCGLLIGAVLLANNIRDIETDRENGKNTLAVRLG---DKNARRLHAALLA  222 (293)
T ss_pred             HHHHHHHHHHHHhcCCCcchhHHHcCCeeEEeeEC---cHhHHHHHHHHHH
Confidence            33445566677889999999999764 44444334   4554444433333

>PRK12324 phosphoribose diphosphate:decaprenyl-phosphate phosphoribosyltransferase; Provisional

Probab=81.36  E-value=7.5  Score=38.39  Aligned_cols=40  Identities=23%  Similarity=0.221  Sum_probs=24.5

Q ss_pred             HHHHHHHhhcCCchhhHhc-CCccchhhhc---hhhHHHHHHHH
Q 015791          297 SAVMSLLKDIPDEDGDKQF-GFQSISSKLG---KENVLRLCVYA  336 (400)
Q Consensus       297 ~~~~~ii~di~D~egD~~~-GirTlpV~lG---~k~a~~l~~~l  336 (400)
                      ..+...+||+-|+|.|+++ .++.=|..=|   .+.+..+...+
T Consensus        59 ~sa~y~iND~~D~e~Dr~~prk~~RPlasG~is~~~A~~~~~~l  102 (295)
T PRK12324         59 SSAVYLVNDIRDVEADRLHPTKRNRPIASGVVSVSLAYILAVVL  102 (295)
T ss_pred             HHHHHHHHhHHHHHhhccCCCCCCCCCCCCccCHHHHHHHHHHH
Confidence            4456789999999999986 2333344434   44454443333

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00