Citrus Sinensis ID: 015795

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400
MYRNAASRLRALKGHVRCRVPSATRFASSSAVASTSSSSGGLFSWLTGERSSSSPSLDFPLPGVSLPPSLPDYVEPGKTKISTLPNGVKIASETSVSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVREVEAIGGNVQASASREQMGYSFDALKTYVPEMVELLIDCVRNPVFLDWEVNEQLTKVKSEISEVSNNPQSLLLEAIHSAGYSGALANPLLAPESAINRLNSTLLEEFVAENYTGPRMVLAASGVEHDQLVSVAEPLLSDLPSIHPREEPKSVYTGGDYRCQADSGDQLTHFVLAFELPGGWHKDKDAMTLTVLQVMISNPHDEFKLIMFPFNTFCNHVIRIWYIDGSFYLHLRFMRNSCIFIFSFQGLHLYFSFHGFY
cHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEcccccEEEEEcccccEEEEEEEEcccccccccccccHHHHHHHHcccccccccHHHHHHHHHHcccEEEEEccccEEEEEEEEccccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHccccccccccccHHHHccccHHHHHHHHHHccccccEEEEEccccHHHHHHHHHHHccccccccccccccccccccccEEEcccccccEEEEEEEEccccccccccHHHHHHHHHHHccccccccccccccccccccccccccccHHHHHHHHHccccEEEEEEccccccccccEEEc
cHHHHHHHHHHHHHcccHHHHHHHHHHcHHHHHHHccccccHHHHHcccccccccccccccccccccccccHHccccccEEEEcccccEEEEEcccccEEEEEEEEcccHHHcccccccHHHHHHccccccEccEcHHHHHHHHHHcccEEEEEEccccEEEEEEEEHHHHHHHHHHHHHHHHcEcccHHHHHHHcHHHHHHHHHHcccHHHHHHHHHHHHHEccHHHccccccHHHcccccHHHHHHHHHHHccHHHEEEEEEcccHHHHHHHHHHHcccccccccccccccccccccEEEEcccccccEEEEEEEEccccccccccHHHHHHHHHHHccccccccccccccccccccccccccccHHHHHHHHHHcccEEEEEHHccccccccEEEEc
MYRNAASRLRALKGhvrcrvpsatrfasssavastssssgglfswltgersssspsldfplpgvslppslpdyvepgktkistlpngvkiasetsvspvASISLYVGcgsiyespisfgTTHLLERMAFRSTRNRSHLRIVREVEAIggnvqasasreqmGYSFDALKTYVPEMVELLIDCVRNPVFLDWEVNEQLTKVKSEISEVSNNPQSLLLEAIHSAgysgalanpllapesAINRLNSTLLEEFvaenytgprmvlaasgvehdqlvsvaepllsdlpsihpreepksvytggdyrcqadsgdqLTHFVLAFelpggwhkdkdaMTLTVLQVMISnphdefklimfpfntfcNHVIRIWYIDGSFYLHLRFMRNSCIFIFSFQGLHLYFSFHGFY
myrnaasrlralkghvrcrvpsatrfasssavastssssgglFSWLTGERSSSSPSLDFPLPGVSLPPSLPDYVEPGKTKISTLPNGVKIASETSVSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVREVeaiggnvqasasreqMGYSFDALKTYVPEMVELLIDCVRNPVFLDWEVNEQLTKVKSEISEVSNNPQSLLLEAIHSAGYSGALANPLLAPESAINRLNSTLLEEFVAENYTGPRMVLAASGVEHDQLVSVAEPllsdlpsihpreepksvytGGDYRCQADSGDQLTHFVLAFELPGGWHKDKDAMTLTVLQVMISNPHDEFKLIMFPFNTFCNHVIRIWYIDGSFYLHLRFMRNSCIFIFSFQGLHLYFSFHGFY
MYRNAASRLRALKGHVRCRVPsatrfasssavastssssgglfsWLTGERsssspsLDFplpgvslppslpDYVEPGKTKISTLPNGVKIASETSVSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVREVEAIGGNVQASASREQMGYSFDALKTYVPEMVELLIDCVRNPVFLDWEVNEQLTKVKSEISEVSNNPQSLLLEAIHSAGYSGALANPLLAPESAINRLNSTLLEEFVAENYTGPRMVLAASGVEHDQLVSVAEPLLSDLPSIHPREEPKSVYTGGDYRCQADSGDQLTHFVLAFELPGGWHKDKDAMTLTVLQVMISNPHDEFKLIMFPFNTFCNHVIRIWYIDGSFYLHLRFMRNSCIFIFSFQGLHLYFSFHGFY
****************************************************************************************KIA**TSVSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVREVEAIGGNVQASASREQMGYSFDALKTYVPEMVELLIDCVRNPVFLDWEVNEQLTKVK***********SLLLEAIHSAGYSGALANPLLAPESAINRLNSTLLEEFVAENYTGPRMVLAASGVEHDQLVSVAEPL***************VYTGGDYRCQADSGDQLTHFVLAFELPGGWHKDKDAMTLTVLQVMISNPHDEFKLIMFPFNTFCNHVIRIWYIDGSFYLHLRFMRNSCIFIFSFQGLHLYFSFHGF*
******************************************************************************TKISTLPNGVKIASETSVSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVREVEAIGGNVQASASREQMGYSFDALKTYVPEMVELLIDCVRNPVFLDWEVNEQLTKVKSEISEVSNNPQSLLLEAIHSAGYSGALANPLLAPESAINRLNSTLLEEFVAENYTGPRMVLAASGVEHDQLVSVAEPLLSDLP***********YTGGDYRCQADSGDQLTHFVLAFELPGGWHKDKDAMTLTVLQVMISNPHDEFKLIMFPF***********YIDGSFYLHLRFMRNSCIFIFSFQGLHLYFSFHGFY
********LRALKGHVRCRVPSAT****************GLFSWL************FPLPGVSLPPSLPDYVEPGKTKISTLPNGVKIASETSVSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVREVEAIGGNVQASASREQMGYSFDALKTYVPEMVELLIDCVRNPVFLDWEVNEQLTKVKSEISEVSNNPQSLLLEAIHSAGYSGALANPLLAPESAINRLNSTLLEEFVAENYTGPRMVLAASGVEHDQLVSVAEPLLSDLPSIHPREEPKSVYTGGDYRCQADSGDQLTHFVLAFELPGGWHKDKDAMTLTVLQVMISNPHDEFKLIMFPFNTFCNHVIRIWYIDGSFYLHLRFMRNSCIFIFSFQGLHLYFSFHGFY
MYRNAASRLRALKGHVRCRVPSATRFASSSAVAS******************SSPSLDFPLPGVSLPPSLPDYVEPGKTKISTLPNGVKIASETSVSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVREVEAIGGNVQASASREQMGYSFDALKTYVPEMVELLIDCVRNPVFLDWEVNEQLTKVKSEISEVSNNPQSLLLEAIHSAGYSGALANPLLAPESAINRLNSTLLEEFVAENYTGPRMVLAASGVEHDQLVSVAEPLLSDLPSIHPREEPKSVYTGGDYRCQADSGDQLTHFVLAFELPGGWHKDKDAMTLTVLQVMISNPHDEFKLIMFPFNTFCNHVIRIWYIDGSFYLHLRFMRNSCIFIFSFQGLHLYFSFHGFY
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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MYRNAASRLRALKGHVRCRVPSATRFASSSAVASTSSSSGGLFSWLTGERSSSSPSLDFPLPGVSLPPSLPDYVEPGKTKISTLPNGVKIASETSVSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVREVEAIGGNVQASASREQMGYSFDALKTYVPEMVELLIDCVRNPVFLDWEVNEQLTKVKSEISEVSNNPQSLLLEAIHSAGYSGALANPLLAPESAINRLNSTLLEEFVAENYTGPRMVLAASGVEHDQLVSVAEPLLSDLPSIHPREEPKSVYTGGDYRCQADSGDQLTHFVLAFELPGGWHKDKDAMTLTVLQVMISNPHDEFKLIMFPFNTFCNHVIRIWYIDGSFYLHLRFMRNSCIFIFSFQGLHLYFSFHGFY
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query400 2.2.26 [Sep-21-2011]
P29677 504 Mitochondrial-processing N/A no 0.832 0.660 0.699 1e-136
Q9ZU25 503 Probable mitochondrial-pr yes no 0.837 0.666 0.651 1e-123
O04308 499 Probable mitochondrial-pr no no 0.827 0.663 0.651 1e-109
P22695453 Cytochrome b-c1 complex s yes no 0.647 0.571 0.358 2e-36
P32551452 Cytochrome b-c1 complex s yes no 0.692 0.612 0.319 2e-35
Q9DB77453 Cytochrome b-c1 complex s yes no 0.675 0.596 0.320 4e-35
Q3SZ71 490 Mitochondrial-processing yes no 0.665 0.542 0.328 5e-35
Q68FY0 480 Cytochrome b-c1 complex s no no 0.652 0.543 0.314 4e-34
Q9CZ13 480 Cytochrome b-c1 complex s no no 0.72 0.6 0.307 4e-34
O75439 489 Mitochondrial-processing no no 0.665 0.543 0.321 5e-34
>sp|P29677|MPPA_SOLTU Mitochondrial-processing peptidase subunit alpha OS=Solanum tuberosum GN=MPP PE=1 SV=1 Back     alignment and function desciption
 Score =  485 bits (1248), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 237/339 (69%), Positives = 277/339 (81%), Gaps = 6/339 (1%)

Query: 1   MYRNAASRLRALKGHVRCRVPSATRFASSSAVASTSSSSGGLFSWLTGERSSSSPSLDFP 60
           MYR A+SRL +LK     RV   TRF+SS+AVA+    SGGLFSW+TG+ SSS   LDFP
Sbjct: 1   MYRCASSRLSSLKARQGNRV--LTRFSSSAAVAT--KPSGGLFSWITGDTSSSVTPLDFP 56

Query: 61  LPGVSLPPSLPDYVEPGKTKISTLPNGVKIASETSVSPVASISLYVGCGSIYESPISFGT 120
           L  V L P LPDYVEP KT+I+TL NG+K+ASE SV+P ASI LYV CGSIYE+P S+G 
Sbjct: 57  LNDVKLSPPLPDYVEPAKTQITTLANGLKVASEASVNPAASIGLYVDCGSIYETPASYGA 116

Query: 121 THLLERMAFRSTRNRSHLRIVREVEAIGGNVQASASREQMGYSFDALKTYVPEMVELLID 180
           THLLERMAF+ST NRSHLRIVRE+EAIGGNV ASASRE M Y++DALKTYVP+MVE+L D
Sbjct: 117 THLLERMAFKSTLNRSHLRIVREIEAIGGNVTASASREHMIYTYDALKTYVPQMVEMLAD 176

Query: 181 CVRNPVFLDWEVNEQLTKVKSEISEVSNNPQSLLLEAIHSAGYSGALANPLLAPESAINR 240
           CVRNP FLDWEV EQL KVK+EISE S NPQ LLLEA+HSAGY+G   N L+A E+ INR
Sbjct: 177 CVRNPAFLDWEVKEQLEKVKAEISEYSKNPQHLLLEAVHSAGYAGPYGNSLMATEATINR 236

Query: 241 LNSTLLEEFVAENYTGPRMVLAASGVEHDQLVSVAEPLLSDLPSIHPREEPKSVYTGGDY 300
           LNST+LEEFVAENYT PRMVLAASGVEH++ + VAEPLLSDLP +   EEPK VY GGDY
Sbjct: 237 LNSTVLEEFVAENYTAPRMVLAASGVEHEEFLKVAEPLLSDLPKVATIEEPKPVYVGGDY 296

Query: 301 RCQADSGDQLTHFVLAFELPGGWHKDKDAMTLTVLQVMI 339
           RCQAD+  ++THF LAFE+PGGW  +K++MTLTVLQ+++
Sbjct: 297 RCQADA--EMTHFALAFEVPGGWMSEKESMTLTVLQMLM 333
This is a component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is part of the mitochondrial respiratory chain. Mediate formation of the complex between cytochromes c and c1.
Solanum tuberosum (taxid: 4113)
EC: 1EC: .EC: 1EC: 0EC: .EC: 2EC: .EC: 2
>sp|Q9ZU25|MPPA1_ARATH Probable mitochondrial-processing peptidase subunit alpha-1 OS=Arabidopsis thaliana GN=At1g51980 PE=1 SV=1 Back     alignment and function description
>sp|O04308|MPPA2_ARATH Probable mitochondrial-processing peptidase subunit alpha-2 OS=Arabidopsis thaliana GN=MPPA2 PE=1 SV=1 Back     alignment and function description
>sp|P22695|QCR2_HUMAN Cytochrome b-c1 complex subunit 2, mitochondrial OS=Homo sapiens GN=UQCRC2 PE=1 SV=3 Back     alignment and function description
>sp|P32551|QCR2_RAT Cytochrome b-c1 complex subunit 2, mitochondrial OS=Rattus norvegicus GN=Uqcrc2 PE=1 SV=2 Back     alignment and function description
>sp|Q9DB77|QCR2_MOUSE Cytochrome b-c1 complex subunit 2, mitochondrial OS=Mus musculus GN=Uqcrc2 PE=1 SV=1 Back     alignment and function description
>sp|Q3SZ71|MPPB_BOVIN Mitochondrial-processing peptidase subunit beta OS=Bos taurus GN=PMPCB PE=2 SV=1 Back     alignment and function description
>sp|Q68FY0|QCR1_RAT Cytochrome b-c1 complex subunit 1, mitochondrial OS=Rattus norvegicus GN=Uqcrc1 PE=1 SV=1 Back     alignment and function description
>sp|Q9CZ13|QCR1_MOUSE Cytochrome b-c1 complex subunit 1, mitochondrial OS=Mus musculus GN=Uqcrc1 PE=1 SV=2 Back     alignment and function description
>sp|O75439|MPPB_HUMAN Mitochondrial-processing peptidase subunit beta OS=Homo sapiens GN=PMPCB PE=1 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query400
356513189 511 PREDICTED: mitochondrial-processing pept 0.84 0.657 0.787 1e-154
356523720 509 PREDICTED: mitochondrial-processing pept 0.84 0.660 0.774 1e-154
356513191 508 PREDICTED: mitochondrial-processing pept 0.842 0.663 0.785 1e-152
225445041 506 PREDICTED: mitochondrial-processing pept 0.837 0.662 0.784 1e-147
225442426 506 PREDICTED: mitochondrial-processing pept 0.837 0.662 0.784 1e-146
224100403 506 predicted protein [Populus trichocarpa] 0.837 0.662 0.761 1e-145
255546263 507 mitochondrial processing peptidase alpha 0.84 0.662 0.755 1e-144
357520795 510 Mitochondrial-processing peptidase subun 0.842 0.660 0.750 1e-144
217075747 510 unknown [Medicago truncatula] gi|3885152 0.842 0.660 0.744 1e-144
449487989 505 PREDICTED: mitochondrial-processing pept 0.835 0.661 0.737 1e-142
>gi|356513189|ref|XP_003525296.1| PREDICTED: mitochondrial-processing peptidase subunit alpha-like isoform 1 [Glycine max] Back     alignment and taxonomy information
 Score =  551 bits (1421), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 271/344 (78%), Positives = 300/344 (87%), Gaps = 8/344 (2%)

Query: 1   MYRNAASRLRALKGHVRC----RVPSATRFASSSAVASTSSSS-GGLFSWLTGERSSSSP 55
           MYRNAASRLRA+K    C    RVP++ RFASS A   +SSS  GGLF WLTG+R+SS P
Sbjct: 1   MYRNAASRLRAIKAR-SCSSSSRVPASARFASSVATQQSSSSGLGGLFGWLTGDRTSSLP 59

Query: 56  SLDFPLPGVSLPPSLPDYVEPGKTKISTLPNGVKIASETSVSPVASISLYVGCGSIYESP 115
           SL FPLPGV+LPP LPDYV PGKT I+TLPNG+K+ASETS SP ASI LYV CGSIYESP
Sbjct: 60  SLGFPLPGVTLPPPLPDYVAPGKTIITTLPNGLKVASETSPSPTASIGLYVDCGSIYESP 119

Query: 116 ISFGTTHLLERMAFRSTRNRSHLRIVREVEAIGGNVQASASREQMGYSFDALKTYVPEMV 175
           ISFG THLLERMAF++TRNRSH R+VREVEAIGGNVQASASREQMGY+FDALKTYVPEMV
Sbjct: 120 ISFGATHLLERMAFKTTRNRSHFRVVREVEAIGGNVQASASREQMGYTFDALKTYVPEMV 179

Query: 176 ELLIDCVRNPVFLDWEVNEQLTKVKSEISEVSNNPQSLLLEAIHSAGYSGALANPLLAPE 235
           ELL+DCVRNPVFLDWEVNEQL KVK+EI E S NPQ LLLEAIHSAG+SGALANPLLA E
Sbjct: 180 ELLVDCVRNPVFLDWEVNEQLLKVKAEIGEASKNPQDLLLEAIHSAGFSGALANPLLASE 239

Query: 236 SAINRLNSTLLEEFVAENYTGPRMVLAASGVEHDQLVSVAEPLLSDLPSIHPREEPKSVY 295
           SA+NRLNST+LEEFVAENYT PR+VLAASGVEH++L+S+AEPLLSDLPS+   EEPKSVY
Sbjct: 240 SAVNRLNSTILEEFVAENYTAPRIVLAASGVEHEELLSIAEPLLSDLPSVPRPEEPKSVY 299

Query: 296 TGGDYRCQADSGDQLTHFVLAFELPGGWHKDKDAMTLTVLQVMI 339
           TGGDYRCQ +SG   THF LAFELPGGWHK KDAM LTVLQ+++
Sbjct: 300 TGGDYRCQKESGR--THFALAFELPGGWHKLKDAMVLTVLQMLL 341

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|356523720|ref|XP_003530483.1| PREDICTED: mitochondrial-processing peptidase subunit alpha-like [Glycine max] Back     alignment and taxonomy information
>gi|356513191|ref|XP_003525297.1| PREDICTED: mitochondrial-processing peptidase subunit alpha-like isoform 2 [Glycine max] Back     alignment and taxonomy information
>gi|225445041|ref|XP_002283310.1| PREDICTED: mitochondrial-processing peptidase subunit alpha [Vitis vinifera] gi|297738729|emb|CBI27974.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|225442426|ref|XP_002283426.1| PREDICTED: mitochondrial-processing peptidase subunit alpha [Vitis vinifera] gi|297743169|emb|CBI36036.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|224100403|ref|XP_002311862.1| predicted protein [Populus trichocarpa] gi|222851682|gb|EEE89229.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|255546263|ref|XP_002514191.1| mitochondrial processing peptidase alpha subunit, putative [Ricinus communis] gi|223546647|gb|EEF48145.1| mitochondrial processing peptidase alpha subunit, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|357520795|ref|XP_003630686.1| Mitochondrial-processing peptidase subunit alpha [Medicago truncatula] gi|355524708|gb|AET05162.1| Mitochondrial-processing peptidase subunit alpha [Medicago truncatula] Back     alignment and taxonomy information
>gi|217075747|gb|ACJ86233.1| unknown [Medicago truncatula] gi|388515299|gb|AFK45711.1| unknown [Medicago truncatula] Back     alignment and taxonomy information
>gi|449487989|ref|XP_004157901.1| PREDICTED: mitochondrial-processing peptidase subunit alpha-like [Cucumis sativus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query400
TAIR|locus:2034096 503 AT1G51980 [Arabidopsis thalian 0.837 0.666 0.584 3.9e-99
TAIR|locus:2088309 499 MPPalpha "mitochondrial proces 0.827 0.663 0.569 2.6e-95
ZFIN|ZDB-GENE-030131-1269454 uqcrc2b "ubiquinol-cytochrome 0.655 0.577 0.350 3e-37
UNIPROTKB|H3BRG4412 UQCRC2 "Cytochrome b-c1 comple 0.66 0.640 0.355 6.3e-37
UNIPROTKB|H3BSJ9336 UQCRC2 "Cytochrome b-c1 comple 0.66 0.785 0.355 6.3e-37
UNIPROTKB|P22695453 UQCRC2 "Cytochrome b-c1 comple 0.66 0.582 0.355 6.3e-37
UNIPROTKB|F1P582457 UQCRC2 "Uncharacterized protei 0.645 0.564 0.352 2.7e-36
UNIPROTKB|F1P3S2 471 PMPCB "Uncharacterized protein 0.65 0.552 0.348 3.5e-36
ZFIN|ZDB-GENE-040718-405460 uqcrc2a "ubiquinol-cytochrome 0.662 0.576 0.339 7.2e-36
ZFIN|ZDB-GENE-050220-10 470 pmpcb "peptidase (mitochondria 0.652 0.555 0.340 1.5e-35
TAIR|locus:2034096 AT1G51980 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 984 (351.4 bits), Expect = 3.9e-99, P = 3.9e-99
 Identities = 198/339 (58%), Positives = 239/339 (70%)

Query:     1 MYRNAASRLRALKGHVRCRVPXXXXXXXXXXXXXXXXXXXXXXXWLTGERXXXXXXLDFX 60
             MYR AASR RALKG V  R                         WL+G        LD  
Sbjct:     1 MYRTAASRARALKG-VLTRSLRPARYASSSAVAETSSSTPAYLSWLSGGSRAALTSLDMP 59

Query:    61 XXXXXXXXXXXDYVEPGKTKISTLPNGVKIASETSVSPVASISLYVGCGSIYESPISFGT 120
                        D VEP K +I+TLPNG+KIASET+ +P ASI LYV CGSIYE+P   G 
Sbjct:    60 LQGVSLPPPLADKVEPSKLQITTLPNGLKIASETTPNPAASIGLYVDCGSIYEAPYFHGA 119

Query:   121 THLLERMAFRSTRNRSHLRIVREVEAIGGNVQASASREQMGYSFDALKTYVPEMVELLID 180
             THLLERMAF+ST NR+H R+VRE+EAIGGN  ASASREQM Y+ DALKTYVPEMVE+LID
Sbjct:   120 THLLERMAFKSTLNRTHFRLVREIEAIGGNTSASASREQMSYTIDALKTYVPEMVEVLID 179

Query:   181 CVRNPVFLDWEVNEQLTKVKSEISEVSNNPQSLLLEAIHSAGYSGALANPLLAPESAINR 240
              VRNP FLDWEVNE+L K+K EI+E++ NP   LLEAIHSAGYSG LA+PL APESA++R
Sbjct:   180 SVRNPAFLDWEVNEELRKMKVEIAELAKNPMGFLLEAIHSAGYSGPLASPLYAPESALDR 239

Query:   241 LNSTLLEEFVAENYTGPRMVLAASGVEHDQLVSVAEPLLSDLPSIHPREEPKSVYTGGDY 300
             LN  LLEEF+ EN+T  RMVLAASGVEH++L+ VAEPL SDLP++ P+  PKS Y GGD+
Sbjct:   240 LNGELLEEFMTENFTAARMVLAASGVEHEELLKVAEPLTSDLPNVPPQLAPKSQYVGGDF 299

Query:   301 RCQADSGDQLTHFVLAFELPGGWHKDKDAMTLTVLQVMI 339
             R    +G + THF +AFE+PG W+ +K+A+T TVLQ+++
Sbjct:   300 R--QHTGGEATHFAVAFEVPG-WNNEKEAVTATVLQMLM 335
GO:0003824 "catalytic activity" evidence=IEA
GO:0004222 "metalloendopeptidase activity" evidence=IEA;ISS
GO:0005739 "mitochondrion" evidence=ISM;IDA
GO:0006508 "proteolysis" evidence=IEA;ISS
GO:0008270 "zinc ion binding" evidence=IEA
GO:0046872 "metal ion binding" evidence=IEA
GO:0009507 "chloroplast" evidence=IDA
GO:0009536 "plastid" evidence=IDA
GO:0005524 "ATP binding" evidence=IDA
GO:0005774 "vacuolar membrane" evidence=IDA
GO:0016020 "membrane" evidence=IDA
GO:0009651 "response to salt stress" evidence=IEP;RCA
GO:0005750 "mitochondrial respiratory chain complex III" evidence=IDA
GO:0006007 "glucose catabolic process" evidence=RCA
GO:0006096 "glycolysis" evidence=RCA
GO:0006098 "pentose-phosphate shunt" evidence=RCA
GO:0009060 "aerobic respiration" evidence=RCA
GO:0046686 "response to cadmium ion" evidence=RCA
TAIR|locus:2088309 MPPalpha "mitochondrial processing peptidase alpha subunit" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-030131-1269 uqcrc2b "ubiquinol-cytochrome c reductase core protein IIb" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|H3BRG4 UQCRC2 "Cytochrome b-c1 complex subunit 2, mitochondrial" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|H3BSJ9 UQCRC2 "Cytochrome b-c1 complex subunit 2, mitochondrial" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|P22695 UQCRC2 "Cytochrome b-c1 complex subunit 2, mitochondrial" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F1P582 UQCRC2 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|F1P3S2 PMPCB "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-040718-405 uqcrc2a "ubiquinol-cytochrome c reductase core protein IIa" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-050220-10 pmpcb "peptidase (mitochondrial processing) beta" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9ZU25MPPA1_ARATH3, ., 4, ., 2, 4, ., 6, 40.65190.83750.6660yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.4.24LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query400
pfam00675149 pfam00675, Peptidase_M16, Insulinase (Peptidase fa 1e-42
COG0612438 COG0612, PqqL, Predicted Zn-dependent peptidases [ 1e-39
pfam05193182 pfam05193, Peptidase_M16_C, Peptidase M16 inactive 3e-13
>gnl|CDD|216056 pfam00675, Peptidase_M16, Insulinase (Peptidase family M16) Back     alignment and domain information 
 Score =  145 bits (369), Expect = 1e-42
 Identities = 50/149 (33%), Positives = 78/149 (52%), Gaps = 2/149 (1%)

Query: 89  KIASE-TSVSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVREVEAI 147
           ++ASE    +  +++ L++  GS YE   + G  H LE MAF+ T+      +  E+E +
Sbjct: 1   RVASEHDPPADTSAVGLWIDAGSRYEPDDNNGLAHFLEHMAFKGTKKYPSEDLEEELEKL 60

Query: 148 GGNVQASASREQMGYSFDALKTYVPEMVELLIDCVRNPVFLDWEVNEQLTKVKSEISEVS 207
           GG++ A  SRE   Y  + L   +P+ V+ L D   NP+F   EV  +   V  E+  V 
Sbjct: 61  GGSLNAYTSREHTVYYVEVLNDDLPKAVDRLADFFLNPLFSPSEVERERLVVLYEVEAVD 120

Query: 208 NNPQSLLLEAIHSAGYSG-ALANPLLAPE 235
             PQ++LL+ +H+A Y G  L   LL P 
Sbjct: 121 AEPQAVLLDNLHAAAYRGTPLGRSLLGPG 149

Length = 149
>gnl|CDD|223685 COG0612, PqqL, Predicted Zn-dependent peptidases [General function prediction only] Back     alignment and domain information
>gnl|CDD|218490 pfam05193, Peptidase_M16_C, Peptidase M16 inactive domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 400
KOG2067 472 consensus Mitochondrial processing peptidase, alph 100.0
KOG0960 467 consensus Mitochondrial processing peptidase, beta 100.0
COG0612 438 PqqL Predicted Zn-dependent peptidases [General fu 100.0
TIGR02110 696 PQQ_syn_pqqF coenzyme PQQ biosynthesis probable pe 100.0
PRK15101 961 protease3; Provisional 100.0
PTZ00432 1119 falcilysin; Provisional 99.97
KOG2583429 consensus Ubiquinol cytochrome c reductase, subuni 99.96
COG1025 937 Ptr Secreted/periplasmic Zn-dependent peptidases, 99.95
KOG0959 974 consensus N-arginine dibasic convertase NRD1 and r 99.95
PRK15101 961 protease3; Provisional 99.95
PF00675149 Peptidase_M16: Insulinase (Peptidase family M16) T 99.91
COG1026 978 Predicted Zn-dependent peptidases, insulinase-like 99.77
KOG2019 998 consensus Metalloendoprotease HMP1 (insulinase sup 99.7
COG1026 978 Predicted Zn-dependent peptidases, insulinase-like 99.69
PTZ00432 1119 falcilysin; Provisional 99.66
PF05193184 Peptidase_M16_C: Peptidase M16 inactive domain; In 99.66
KOG0961 1022 consensus Predicted Zn2+-dependent endopeptidase, 99.63
KOG2019 998 consensus Metalloendoprotease HMP1 (insulinase sup 99.57
COG1025 937 Ptr Secreted/periplasmic Zn-dependent peptidases, 99.56
KOG0959 974 consensus N-arginine dibasic convertase NRD1 and r 99.32
PF08367248 M16C_assoc: Peptidase M16C associated; InterPro: I 98.8
PF03410 590 Peptidase_M44: Protein G1; InterPro: IPR005072 In 97.68
KOG0961 1022 consensus Predicted Zn2+-dependent endopeptidase, 97.56
PHA03081 595 putative metalloprotease; Provisional 97.5
KOG0960467 consensus Mitochondrial processing peptidase, beta 96.96
KOG2067472 consensus Mitochondrial processing peptidase, alph 96.15
COG0612438 PqqL Predicted Zn-dependent peptidases [General fu 95.98
TIGR02110696 PQQ_syn_pqqF coenzyme PQQ biosynthesis probable pe 93.53
PF05193184 Peptidase_M16_C: Peptidase M16 inactive domain; In 88.33
>KOG2067 consensus Mitochondrial processing peptidase, alpha subunit [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information 
Probab=100.00  E-value=9e-50  Score=360.40  Aligned_cols=302  Identities=42%  Similarity=0.606  Sum_probs=274.5

Q ss_pred             CCCceEEEEcCCCcEEEEEeCCCCEEEEEEEEcccccCCCCCCCcHHHHHHHHHhccCCCCChHHHHHHHHHcCCeeEEE
Q 015795           75 EPGKTKISTLPNGVKIASETSVSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVREVEAIGGNVQAS  154 (400)
Q Consensus        75 ~~~~~~~~~L~NG~~v~~~~~~~~~~~i~l~~~~G~~~e~~~~~g~a~ll~~l~~~gt~~~s~~~l~~~l~~~g~~~~~~  154 (400)
                      ++.+++.++|+||+||++++++++.+++++++++|+++|.+...|++|++++|+|++|.+++..++...||.+||+++|+
T Consensus        21 ~~~~~kvttL~NGlkvase~~pg~f~~vGlyIdsGsrYE~~~~~GisH~lerLAF~ST~~~~~~ei~~~LE~~GGn~~cq  100 (472)
T KOG2067|consen   21 EPSNTKVTTLPNGLKVASENTPGQFCTVGLYIDSGSRYEAKYFSGISHFLERLAFKSTERFSSKEILAELEKLGGNCDCQ  100 (472)
T ss_pred             ccccceeeecCCccEEeccCCCCCceEEEEEEecCccccCcCcccHHHHHHHHhhccccCCcHHHHHHHHHHhCCccccc
Confidence            56689999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eccceEEEEEEecCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhc-CCCCCCCCCC
Q 015795          155 ASREQMGYSFDALKTYVPEMVELLIDCVRNPVFLDWEVNEQLTKVKSEISEVSNNPQSLLLEAIHSAGY-SGALANPLLA  233 (400)
Q Consensus       155 ~~~~~~~~~~~~~~~~l~~~l~ll~~~l~~p~f~~~~~~~~k~~~~~~l~~~~~~p~~~~~~~l~~~~~-~~p~~~~~~~  233 (400)
                      +++|.+.|.+++.+++++.++++|+|.+.+|+|++|+++.+|..++-|++....+|+.++.+.+|.++| +++++.|.+|
T Consensus       101 sSRetm~Yaas~~~~~v~sm~~lLadtV~~P~~~d~ev~~~~~~v~~E~~el~~~Pe~lL~e~iH~Aay~~ntlg~pl~c  180 (472)
T KOG2067|consen  101 SSRETMMYAASADSDGVDSMVELLADTVLNPKFTDQEVEEARRAVKYEIEELWMRPEPLLTEMIHSAAYSGNTLGLPLLC  180 (472)
T ss_pred             ccHhhhHHHHHhhhcccHHHHHHHHHHHhcccccHHHHHHHHHhhhheccccccCchhhHHHHHHHHHhccCcccccccC
Confidence            999999999999999999999999999999999999999999999999999999999999999999999 9999999999


Q ss_pred             ChHhhcccCHHHHHHHHHhhcCCCCeEEEEEcCCHHHHHHHHHhhcCCCCCCCCC--CCCCCCCCCCceEEecCC-----
Q 015795          234 PESAINRLNSTLLEEFVAENYTGPRMVLAASGVEHDQLVSVAEPLLSDLPSIHPR--EEPKSVYTGGDYRCQADS-----  306 (400)
Q Consensus       234 ~~~~l~~it~~~l~~f~~~~~~~~~~~l~vvGv~~~~l~~lv~~~~~~l~~~~~~--~~~~~~~~~~~~~~~~~~-----  306 (400)
                      +++.+++|+.+.|.+|.+++|+|+||+++.|||+|++++++++++|++||....+  ..++.+|+||...+..+.     
T Consensus       181 p~~~i~~I~~~~l~~yl~~~ytp~rmVlA~vGV~heelv~~~~~~~~~~~s~~~p~i~~~~aQYtGG~~~~~~d~~~~~~  260 (472)
T KOG2067|consen  181 PEENIDKINREVLEEYLKYFYTPERMVLAGVGVEHEELVEIAEKLLGDLPSTKVPPIDESKAQYTGGELKIDTDAPQVTG  260 (472)
T ss_pred             ChhhhhhhhHHHHHHHHHhcCChhheEeeecCCCHHHHHHHHHHHhccCCccCCCCcccchhhccccccccCCCCccccC
Confidence            9999999999999999999999999999999999999999999999999985433  346679999976655331     


Q ss_pred             CCCceEEEEEeecCCCCCCCCchHHHHHHHHHcCCCCCcccccccccccccccceeeeeccchhhHHHHhhcCeeEEEEe
Q 015795          307 GDQLTHFVLAFELPGGWHKDKDAMTLTVLQVMISNPHDEFKLIMFPFNTFCNHVIRIWYIDGSFYLHLRFMRNSCIFIFS  386 (400)
Q Consensus       307 ~~~qs~v~~~~~~~~~~~~~~d~~~l~vL~~lLggg~ss~~~~~~~~~~~~~~~~~~~~~~~~L~~~iRe~~g~~Ysv~s  386 (400)
                      ..+-+||+++|++++  ++++|.+++.|||.+||||+|.          .-...-+.+|-  |||.++=.+..|.|++-|
T Consensus       261 g~EltHv~lg~Eg~~--~~deD~v~~avLq~lmGGGGSF----------SAGGPGKGMyS--rLY~~vLNry~wv~sctA  326 (472)
T KOG2067|consen  261 GPELTHVVLGFEGCS--WNDEDFVALAVLQMLMGGGGSF----------SAGGPGKGMYS--RLYLNVLNRYHWVYSCTA  326 (472)
T ss_pred             ccceeeeeEeeccCC--CCChhHHHHHHHHHHhcCCccc----------CCCCCCcchHH--HHHHHHHhhhHHHHHhhh
Confidence            127899999999998  6999999999999999997653          11222233444  899999999999999888


Q ss_pred             eecc
Q 015795          387 FQGL  390 (400)
Q Consensus       387 ~~~~  390 (400)
                      ++-.
T Consensus       327 fnhs  330 (472)
T KOG2067|consen  327 FNHS  330 (472)
T ss_pred             hhcc
Confidence            7644

>KOG0960 consensus Mitochondrial processing peptidase, beta subunit, and related enzymes (insulinase superfamily) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG0612 PqqL Predicted Zn-dependent peptidases [General function prediction only] Back     alignment and domain information
>TIGR02110 PQQ_syn_pqqF coenzyme PQQ biosynthesis probable peptidase PqqF Back     alignment and domain information
>PRK15101 protease3; Provisional Back     alignment and domain information
>PTZ00432 falcilysin; Provisional Back     alignment and domain information
>KOG2583 consensus Ubiquinol cytochrome c reductase, subunit QCR2 [Energy production and conversion] Back     alignment and domain information
>COG1025 Ptr Secreted/periplasmic Zn-dependent peptidases, insulinase-like [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0959 consensus N-arginine dibasic convertase NRD1 and related Zn2+-dependent endopeptidases, insulinase superfamily [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK15101 protease3; Provisional Back     alignment and domain information
>PF00675 Peptidase_M16: Insulinase (Peptidase family M16) This is family M16 in the peptidase classification Back     alignment and domain information
>COG1026 Predicted Zn-dependent peptidases, insulinase-like [General function prediction only] Back     alignment and domain information
>KOG2019 consensus Metalloendoprotease HMP1 (insulinase superfamily) [General function prediction only; Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG1026 Predicted Zn-dependent peptidases, insulinase-like [General function prediction only] Back     alignment and domain information
>PTZ00432 falcilysin; Provisional Back     alignment and domain information
>PF05193 Peptidase_M16_C: Peptidase M16 inactive domain; InterPro: IPR007863 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families Back     alignment and domain information
>KOG0961 consensus Predicted Zn2+-dependent endopeptidase, insulinase superfamily [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG2019 consensus Metalloendoprotease HMP1 (insulinase superfamily) [General function prediction only; Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG1025 Ptr Secreted/periplasmic Zn-dependent peptidases, insulinase-like [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0959 consensus N-arginine dibasic convertase NRD1 and related Zn2+-dependent endopeptidases, insulinase superfamily [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF08367 M16C_assoc: Peptidase M16C associated; InterPro: IPR013578 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families Back     alignment and domain information
>PF03410 Peptidase_M44: Protein G1; InterPro: IPR005072 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families Back     alignment and domain information
>KOG0961 consensus Predicted Zn2+-dependent endopeptidase, insulinase superfamily [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PHA03081 putative metalloprotease; Provisional Back     alignment and domain information
>KOG0960 consensus Mitochondrial processing peptidase, beta subunit, and related enzymes (insulinase superfamily) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG2067 consensus Mitochondrial processing peptidase, alpha subunit [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG0612 PqqL Predicted Zn-dependent peptidases [General function prediction only] Back     alignment and domain information
>TIGR02110 PQQ_syn_pqqF coenzyme PQQ biosynthesis probable peptidase PqqF Back     alignment and domain information
>PF05193 Peptidase_M16_C: Peptidase M16 inactive domain; InterPro: IPR007863 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query400
3cwb_B441 Chicken Cytochrome Bc1 Complex Inhibited By An Iodi 3e-37
1bcc_A 446 Cytochrome Bc1 Complex From Chicken Length = 446 7e-37
1bcc_B422 Cytochrome Bc1 Complex From Chicken Length = 422 1e-36
3bcc_B422 Stigmatellin And Antimycin Bound Cytochrome Bc1 Com 1e-36
1qcr_A 446 Crystal Structure Of Bovine Mitochondrial Cytochrom 4e-34
1bgy_A 446 Cytochrome Bc1 Complex From Bovine Length = 446 5e-34
1sqb_A 480 Crystal Structure Analysis Of Bovine Bc1 With Azoxy 6e-34
1qcr_B423 Crystal Structure Of Bovine Mitochondrial Cytochrom 7e-34
1sqb_B453 Crystal Structure Analysis Of Bovine Bc1 With Azoxy 7e-34
1bgy_B439 Cytochrome Bc1 Complex From Bovine Length = 439 1e-33
3cwb_A 446 Chicken Cytochrome Bc1 Complex Inhibited By An Iodi 7e-32
1hr6_A 475 Yeast Mitochondrial Processing Peptidase Length = 4 8e-29
1hr6_B 443 Yeast Mitochondrial Processing Peptidase Length = 4 5e-24
1hr7_B 443 Yeast Mitochondrial Processing Peptidase Beta-E73q 1e-23
3hdi_A421 Crystal Structure Of Bacillus Halodurans Metallo Pe 6e-22
1ezv_B352 Structure Of The Yeast Cytochrome Bc1 Complex Co- C 6e-12
3ami_A 445 The Crystal Structure Of The M16b Metallopeptidase 4e-10
3amj_C 437 The Crystal Structure Of The Heterodimer Of M16b Pe 5e-10
1ezv_A 430 Structure Of The Yeast Cytochrome Bc1 Complex Co- C 3e-05
1kb9_A 431 Yeast Cytochrome Bc1 Complex Length = 431 2e-04
>pdb|3CWB|B Chain B, Chicken Cytochrome Bc1 Complex Inhibited By An Iodinated Analogue Of The Polyketide Crocacin-d Length = 441 Back     alignment and structure 
Iteration: 1

 Score =  152 bits (384), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 91/257 (35%), Positives = 140/257 (54%), Gaps = 5/257 (1%)
Query: 80  KISTLPNGVKIASETSVSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLR 139
           +I+ LPNG+ IAS  + SP + I +++  GS YE+  + GT HLL   +  +T+  S  R
Sbjct: 27  EITKLPNGLIIASLENFSPASRIGVFIKAGSRYETTANLGTAHLLRLASPLTTKGASSFR 86
Query: 140 IVREVEAIGGNVQASASREQMGYSFDALKTYVPEMVELLIDCVRNPVFLDWEVNEQLTKV 199
           I R +EA+GG++   ++RE+M Y  + L+ +V  ++E L++    P F  WEV +   ++
Sbjct: 87  ITRGIEAVGGSLSVYSTREKMTYCVECLRDHVDTVMEYLLNVTTAPEFRPWEVTDLQPQL 146
Query: 200 KSEISEVSNNPQSLLLEAIHSAGYSGALANPLLAPESAINRLNSTLLEEFVAENYTGPRM 259
           K + +    +PQ  +LE +H+A Y  ALANPL  P+  I ++ S  L  FV  N+T  RM
Sbjct: 147 KVDKAVAFQSPQVGVLENLHAAAYKTALANPLYCPDYRIGKITSEQLHHFVQNNFTSARM 206
Query: 260 VLAASGVEHDQLVSVAEPLLSDLPSIHPREEPKSVYTGGDYRCQADSGDQLTHFVLAFEL 319
            L   GV+H  L  VAE  L ++ S       K+ Y GG+ R Q  +G  L H  +  E 
Sbjct: 207 ALVGIGVKHSDLKQVAEQFL-NIRSGAGTSSAKATYWGGEIREQ--NGHSLVHAAVVTE- 262
Query: 320 PGGWHKDKDAMTLTVLQ 336
            G      +A   +VLQ
Sbjct: 263 -GAAVGSAEANAFSVLQ 278
>pdb|1BCC|A Chain A, Cytochrome Bc1 Complex From Chicken Length = 446 Back     alignment and structure
>pdb|1BCC|B Chain B, Cytochrome Bc1 Complex From Chicken Length = 422 Back     alignment and structure
>pdb|3BCC|B Chain B, Stigmatellin And Antimycin Bound Cytochrome Bc1 Complex From Chicken Length = 422 Back     alignment and structure
>pdb|1QCR|A Chain A, Crystal Structure Of Bovine Mitochondrial Cytochrome Bc1 Complex, Alpha Carbon Atoms Only Length = 446 Back     alignment and structure
>pdb|1BGY|A Chain A, Cytochrome Bc1 Complex From Bovine Length = 446 Back     alignment and structure
>pdb|1SQB|A Chain A, Crystal Structure Analysis Of Bovine Bc1 With Azoxystrobin Length = 480 Back     alignment and structure
>pdb|1QCR|B Chain B, Crystal Structure Of Bovine Mitochondrial Cytochrome Bc1 Complex, Alpha Carbon Atoms Only Length = 423 Back     alignment and structure
>pdb|1SQB|B Chain B, Crystal Structure Analysis Of Bovine Bc1 With Azoxystrobin Length = 453 Back     alignment and structure
>pdb|1BGY|B Chain B, Cytochrome Bc1 Complex From Bovine Length = 439 Back     alignment and structure
>pdb|3CWB|A Chain A, Chicken Cytochrome Bc1 Complex Inhibited By An Iodinated Analogue Of The Polyketide Crocacin-d Length = 446 Back     alignment and structure
>pdb|1HR6|A Chain A, Yeast Mitochondrial Processing Peptidase Length = 475 Back     alignment and structure
>pdb|1HR6|B Chain B, Yeast Mitochondrial Processing Peptidase Length = 443 Back     alignment and structure
>pdb|1HR7|B Chain B, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant Length = 443 Back     alignment and structure
>pdb|3HDI|A Chain A, Crystal Structure Of Bacillus Halodurans Metallo Peptidase Length = 421 Back     alignment and structure
>pdb|1EZV|B Chain B, Structure Of The Yeast Cytochrome Bc1 Complex Co- Crystallized With An Antibody Fv-Fragment Length = 352 Back     alignment and structure
>pdb|3AMI|A Chain A, The Crystal Structure Of The M16b Metallopeptidase Subunit From Sphingomonas Sp. A1 Length = 445 Back     alignment and structure
>pdb|3AMJ|C Chain C, The Crystal Structure Of The Heterodimer Of M16b Peptidase From Sphingomonas Sp. A1 Length = 437 Back     alignment and structure
>pdb|1EZV|A Chain A, Structure Of The Yeast Cytochrome Bc1 Complex Co- Crystallized With An Antibody Fv-Fragment Length = 430 Back     alignment and structure
>pdb|1KB9|A Chain A, Yeast Cytochrome Bc1 Complex Length = 431 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query400
1pp9_B439 Ubiquinol-cytochrome C reductase complex core Pro 1e-106
1hr6_A 475 Alpha-MPP, mitochondrial processing peptidase alph 4e-99
1pp9_A 446 Ubiquinol-cytochrome C reductase complex core Pro 1e-93
1hr6_B 443 Beta-MPP, mitochondrial processing peptidase beta 3e-90
3cx5_A 431 Cytochrome B-C1 complex subunit 1, mitochondrial; 8e-82
3cx5_B352 Cytochrome B-C1 complex subunit 2, mitochondrial; 9e-81
3hdi_A421 Processing protease; CAGE structure, M16B peptidas 5e-64
3eoq_A406 Putative zinc protease; two similar domains of bet 2e-54
3amj_B424 Zinc peptidase inactive subunit; alpha/beta, zinc 1e-34
3gwb_A434 Peptidase M16 inactive domain family protein; pept 7e-33
3d3y_A425 Uncharacterized protein; APC29635, conserved prote 9e-29
3go9_A 492 Insulinase family protease; IDP00573, structural g 5e-21
3ami_A 445 Zinc peptidase; alpha/beta, zinc binding, hydrolas 3e-20
1q2l_A 939 Protease III; hydrolase; 2.20A {Escherichia coli s 1e-15
3cww_A 990 Insulysin, insulin-degrading enzyme, insulinase; A 4e-12
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-06
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-04
>1pp9_B Ubiquinol-cytochrome C reductase complex core Pro mitochondrial; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: d.185.1.1 d.185.1.1 PDB: 1bgy_B* 1be3_B* 1l0n_B* 1ntk_B* 1ntm_B* 1ntz_B* 1nu1_B* 1l0l_B* 1ppj_B* 1sqq_B* 1sqv_B* 1sqx_B* 2a06_B* 2fyu_B* 2ybb_B* 1sqb_B* 1sqp_B* 1qcr_B* 2bcc_B* 3bcc_B* ... Length = 439 Back     alignment and structure
 Score =  319 bits (820), Expect = e-106
 Identities = 85/286 (29%), Positives = 141/286 (49%), Gaps = 7/286 (2%)

Query: 54  SPSLDFPLPGVSLPPSLPDYVEPGKTKISTLPNGVKIASETSVSPVASISLYVGCGSIYE 113
           S  +   +     P  +P    P   + + LPNG+ IAS  + +P + I L++  GS YE
Sbjct: 1   SLKVAPKVKATEAPAGVPP--HPQDLEFTRLPNGLVIASLENYAPASRIGLFIKAGSRYE 58

Query: 114 SPISFGTTHLLERMAFRSTRNRSHLRIVREVEAIGGNVQASASREQMGYSFDALKTYVPE 173
           +  + GT+HLL   +  +T+  S  +I R +EA+GG +  +++RE M Y+ + L+  V  
Sbjct: 59  NSNNLGTSHLLRLASSLTTKGASSFKITRGIEAVGGKLSVTSTRENMAYTVECLRDDVDI 118

Query: 174 MVELLIDCVRNPVFLDWEVNEQLTKVKSEISEVSNNPQSLLLEAIHSAGYSGALANPLLA 233
           ++E L++    P F  WEV     +++ + +    NPQ+ ++E +H+A Y  ALAN L  
Sbjct: 119 LMEFLLNVTTAPEFRRWEVAALQPQLRIDKAVALQNPQAHVIENLHAAAYRNALANSLYC 178

Query: 234 PESAINRLNSTLLEEFVAENYTGPRMVLAASGVEHDQLVSVAEPLLSDLPSIHPREEPKS 293
           P+  I ++    L ++V  ++T  RM L   GV H  L  VAE  L+    +       +
Sbjct: 179 PDYRIGKVTPVELHDYVQNHFTSARMALIGLGVSHPVLKQVAEQFLNIRGGLGLSGAK-A 237

Query: 294 VYTGGDYRCQADSGDQLTHFVLAFELPGGWHKDKDAMTLTVLQVMI 339
            Y GG+ R Q      L H  L  E         +A   +VLQ ++
Sbjct: 238 KYHGGEIREQNGD--SLVHAALVAE--SAAIGSAEANAFSVLQHVL 279
>1hr6_A Alpha-MPP, mitochondrial processing peptidase alpha subunit; hxxeh zinc-binding motif, hydrolase; HET: EPE; 2.50A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1hr7_A 1hr8_A* 1hr9_A* Length = 475 Back     alignment and structure
>1pp9_A Ubiquinol-cytochrome C reductase complex core Pro mitochondrial; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: d.185.1.1 d.185.1.1 PDB: 1bgy_A* 1be3_A* 1l0n_A* 1ntk_A* 1ntm_A* 1ntz_A* 1nu1_A* 1l0l_A* 1ppj_A* 1sqq_A* 1sqv_A* 1sqx_A* 2a06_A* 2fyu_A* 2ybb_A* 1sqb_A* 1sqp_A* 1qcr_A* 1bcc_A* 2bcc_A* ... Length = 446 Back     alignment and structure
>1hr6_B Beta-MPP, mitochondrial processing peptidase beta subunit; hxxeh zinc-binding motif, hydrolase; HET: EPE; 2.50A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1hr7_B 1hr8_B* 1hr9_B* Length = 443 Back     alignment and structure
>3cx5_A Cytochrome B-C1 complex subunit 1, mitochondrial; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1p84_A* 2ibz_A* 1kb9_A* 3cxh_A* 1ezv_A* 1kyo_A* Length = 431 Back     alignment and structure
>3cx5_B Cytochrome B-C1 complex subunit 2, mitochondrial; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1kb9_B* 1kyo_B* 1p84_B* 2ibz_B* 1ezv_B* 3cxh_B* Length = 352 Back     alignment and structure
>3hdi_A Processing protease; CAGE structure, M16B peptidase, metallopeptidase, peptidasome, protease, hydrolase; 2.70A {Bacillus halodurans c-125} Length = 421 Back     alignment and structure
>3eoq_A Putative zinc protease; two similar domains of beta(2)-alpha(2)-beta(2)-alpha(5)- beta structure, hydrolase; 2.29A {Thermus thermophilus} Length = 406 Back     alignment and structure
>3amj_B Zinc peptidase inactive subunit; alpha/beta, zinc binding, hydrolase; 3.00A {Sphingomonas} Length = 424 Back     alignment and structure
>3gwb_A Peptidase M16 inactive domain family protein; peptidase M16 family, PFL_5859, structural genomics, PSI-2, structure initiative; 1.90A {Pseudomonas fluorescens} Length = 434 Back     alignment and structure
>3d3y_A Uncharacterized protein; APC29635, conserved protein, enterococcus faecalis V583, STR genomics, PSI-2, protein structure initiative; 1.95A {Enterococcus faecalis} Length = 425 Back     alignment and structure
>3go9_A Insulinase family protease; IDP00573, structural genomics, for structural genomics of infectious diseases, csgid, HYDR; HET: MSE; 1.62A {Yersinia pestis} Length = 492 Back     alignment and structure
>3ami_A Zinc peptidase; alpha/beta, zinc binding, hydrolase; 2.40A {Sphingomonas} PDB: 3amj_C Length = 445 Back     alignment and structure
>1q2l_A Protease III; hydrolase; 2.20A {Escherichia coli str} SCOP: d.185.1.1 d.185.1.1 d.185.1.1 d.185.1.1 Length = 939 Back     alignment and structure
>3cww_A Insulysin, insulin-degrading enzyme, insulinase; A-beta degrading enzyme, criptidase, kinins, hydrolase; 1.96A {Homo sapiens} PDB: 3ofi_A 2wc0_A 3h44_A 3n56_A 3n57_A 2wby_A 3qz2_A 3e4z_A 2wk3_A 3e4a_A* 2g47_A 2g48_A 2g49_A 2g54_A 2g56_A 2jbu_A 3e50_A 2jg4_A 3hgz_A 2yb3_A* ... Length = 990 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query400
3eoq_A 406 Putative zinc protease; two similar domains of bet 100.0
3hdi_A 421 Processing protease; CAGE structure, M16B peptidas 100.0
1hr6_A 475 Alpha-MPP, mitochondrial processing peptidase alph 100.0
1hr6_B 443 Beta-MPP, mitochondrial processing peptidase beta 100.0
3ami_A 445 Zinc peptidase; alpha/beta, zinc binding, hydrolas 100.0
1pp9_A 446 Ubiquinol-cytochrome C reductase complex core Pro 100.0
3gwb_A 434 Peptidase M16 inactive domain family protein; pept 100.0
3amj_B 424 Zinc peptidase inactive subunit; alpha/beta, zinc 100.0
1pp9_B 439 Ubiquinol-cytochrome C reductase complex core Pro 100.0
3cx5_A 431 Cytochrome B-C1 complex subunit 1, mitochondrial; 100.0
1q2l_A 939 Protease III; hydrolase; 2.20A {Escherichia coli s 100.0
3d3y_A 425 Uncharacterized protein; APC29635, conserved prote 100.0
3go9_A 492 Insulinase family protease; IDP00573, structural g 100.0
3cww_A 990 Insulysin, insulin-degrading enzyme, insulinase; A 100.0
3s5m_A 1193 Falcilysin; M16 metalloprotease, peptidase, hydrol 100.0
3cx5_B352 Cytochrome B-C1 complex subunit 2, mitochondrial; 100.0
2fge_A 995 Atprep2;, zinc metalloprotease (insulinase family) 100.0
2fge_A 995 Atprep2;, zinc metalloprotease (insulinase family) 99.95
1q2l_A 939 Protease III; hydrolase; 2.20A {Escherichia coli s 99.94
3cww_A 990 Insulysin, insulin-degrading enzyme, insulinase; A 99.92
3s5m_A 1193 Falcilysin; M16 metalloprotease, peptidase, hydrol 99.89
3ih6_A 197 Putative zinc protease; bordetella pertussis toham 98.81
3ih6_A197 Putative zinc protease; bordetella pertussis toham 98.51
3hdi_A421 Processing protease; CAGE structure, M16B peptidas 98.22
1hr6_B443 Beta-MPP, mitochondrial processing peptidase beta 98.21
3cx5_A431 Cytochrome B-C1 complex subunit 1, mitochondrial; 98.2
3eoq_A406 Putative zinc protease; two similar domains of bet 98.2
3amj_B424 Zinc peptidase inactive subunit; alpha/beta, zinc 98.08
1pp9_A446 Ubiquinol-cytochrome C reductase complex core Pro 98.07
1hr6_A475 Alpha-MPP, mitochondrial processing peptidase alph 97.96
3gwb_A434 Peptidase M16 inactive domain family protein; pept 97.95
1pp9_B439 Ubiquinol-cytochrome C reductase complex core Pro 97.85
3ami_A445 Zinc peptidase; alpha/beta, zinc binding, hydrolas 97.73
3d3y_A425 Uncharacterized protein; APC29635, conserved prote 97.52
3go9_A492 Insulinase family protease; IDP00573, structural g 97.19
>3eoq_A Putative zinc protease; two similar domains of beta(2)-alpha(2)-beta(2)-alpha(5)- beta structure, hydrolase; 2.29A {Thermus thermophilus} Back     alignment and structure
Probab=100.00  E-value=1.4e-46  Score=366.39  Aligned_cols=285  Identities=18%  Similarity=0.231  Sum_probs=258.6

Q ss_pred             eEEEEcCCCcEEEEEeCCC-CEEEEEEEEcccccCCCCCCCcHHHHHHHHHhccCCCCChHHHHHHHHHcCCeeEEEecc
Q 015795           79 TKISTLPNGVKIASETSVS-PVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVREVEAIGGNVQASASR  157 (400)
Q Consensus        79 ~~~~~L~NG~~v~~~~~~~-~~~~i~l~~~~G~~~e~~~~~g~a~ll~~l~~~gt~~~s~~~l~~~l~~~g~~~~~~~~~  157 (400)
                      ++.++|+||++|++.+.+. +.+++.+++++|+++|++...|++|+++||+|.||.+++..++.+.++.+|+.++++++.
T Consensus         2 ~~~~~L~NGl~v~~~~~~~~~~~~~~l~~~~Gs~~e~~~~~G~ah~lehmlf~Gt~~~~~~~~~~~l~~~G~~~na~t~~   81 (406)
T 3eoq_A            2 FREAELRNGLRVIAEVVPGARSVALGYFVKTGARDETKEESGVSHFLEHMVFKGPEDMDALAVNRAFDRMGAQYNAFTSE   81 (406)
T ss_dssp             EEEEECTTSCEEEEEECTTCSCEEEEEEESCSGGGSCGGGTTHHHHHHHHHTTCCTTCCHHHHHHHHHHTTCEEEEEECS
T ss_pred             ceeEEcCCCCEEEEEECCCCCeEEEEEEEccccCCCCCCCCCHHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCccceecC
Confidence            5789999999999876655 799999999999999999999999999999999999999999999999999999999999


Q ss_pred             ceEEEEEEecCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhc-CCCCCCCCCCChH
Q 015795          158 EQMGYSFDALKTYVPEMVELLIDCVRNPVFLDWEVNEQLTKVKSEISEVSNNPQSLLLEAIHSAGY-SGALANPLLAPES  236 (400)
Q Consensus       158 ~~~~~~~~~~~~~l~~~l~ll~~~l~~p~f~~~~~~~~k~~~~~~l~~~~~~p~~~~~~~l~~~~~-~~p~~~~~~~~~~  236 (400)
                      +++.|.+++++++++.+|+++.+++ +|.|++++|+++|..+.++++...++|...+.+.+++.+| +|||+++..|+.+
T Consensus        82 d~t~y~~~~~~~~l~~~l~ll~d~~-~p~f~~~~~~~ek~~v~~e~~~~~~~p~~~~~~~~~~~~~~~~p~~~~~~G~~~  160 (406)
T 3eoq_A           82 EATVYYGAVLPEFAYDLLGLFAKLL-RPALREEDFQTEKLVILEEIARYQDRPGFMAYEWARARFFQGHPLGNSVLGTRE  160 (406)
T ss_dssp             SCEEEEEEECGGGHHHHHHHHHHHT-SCCCCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHTTCGGGCCSSCCHH
T ss_pred             CeEEEEEEecHHHHHHHHHHHHHHh-cCCCCHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCCCcCCHH
Confidence            9999999999999999999999999 9999999999999999999999999999999999999999 9999999999999


Q ss_pred             hhcccCHHHHHHHHHhhcCCCCeEEEEEc-CCHHHHHHHHHhhcCCCCCCCCCCCCC-CCCCCCceEEecCCCCCceEEE
Q 015795          237 AINRLNSTLLEEFVAENYTGPRMVLAASG-VEHDQLVSVAEPLLSDLPSIHPREEPK-SVYTGGDYRCQADSGDQLTHFV  314 (400)
Q Consensus       237 ~l~~it~~~l~~f~~~~~~~~~~~l~vvG-v~~~~l~~lv~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~qs~v~  314 (400)
                      +|++++.++|++||+++|.|+||+|+++| +++++++++++++|+.|+..+.+.... ....++...+..+ ..+|+++.
T Consensus       161 ~i~~~t~~~l~~f~~~~y~p~n~~l~v~Gd~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~q~~~~  239 (406)
T 3eoq_A          161 SITALTREGMAAYHRRRYLPKNMVLAATGRVDFDRLLAEAERLTEAWPEGEAERAYPPLTPAFGVEERPYE-KARALYLV  239 (406)
T ss_dssp             HHHHCCHHHHHHHHHHHCCGGGEEEEEEESCCHHHHHHHHHHHHTTCCCCCCCCCCCCCCCCCEEEEEECT-TCSSEEEE
T ss_pred             HHhhCCHHHHHHHHHHhCCccCEEEEEEcCCCHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCceEEEecC-CccceEEE
Confidence            99999999999999999999999999999 999999999999999998654332211 1222333333332 22799999


Q ss_pred             EEeecCCCCCCCCchHHHHHHHHHcCCCCCcccccccccccccccceeeeeccchhhHHHHhhcCeeEEEEeeeccc
Q 015795          315 LAFELPGGWHKDKDAMTLTVLQVMISNPHDEFKLIMFPFNTFCNHVIRIWYIDGSFYLHLRFMRNSCIFIFSFQGLH  391 (400)
Q Consensus       315 ~~~~~~~~~~~~~d~~~l~vL~~lLggg~ss~~~~~~~~~~~~~~~~~~~~~~~~L~~~iRe~~g~~Ysv~s~~~~~  391 (400)
                      ++|+++.  .+++|.+++.|++.+|||+++|                       +||++||| +|++|+++++....
T Consensus       240 ~~~~~~~--~~~~d~~~l~vl~~iLgg~~~s-----------------------rL~~~lre-~gl~y~~~s~~~~~  290 (406)
T 3eoq_A          240 ALFPGVA--YQEEARFPGQVLAHLLGEEGSG-----------------------RLHFALVD-KGLAEVASFGLEEA  290 (406)
T ss_dssp             EEEECCC--TTCTTHHHHHHHHHHHHCTTTS-----------------------HHHHHTTT-TTSEEEEEEEEEEC
T ss_pred             EEecCCC--CCCchHHHHHHHHHHhCCCcch-----------------------HHHHHHHH-cCCeeEEEEEeccc
Confidence            9999987  6889999999999999999888                       99999999 99999999987654
>3hdi_A Processing protease; CAGE structure, M16B peptidase, metallopeptidase, peptidasome, protease, hydrolase; 2.70A {Bacillus halodurans c-125} Back     alignment and structure
>1hr6_A Alpha-MPP, mitochondrial processing peptidase alpha subunit; hxxeh zinc-binding motif, hydrolase; HET: EPE; 2.50A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1hr7_A 1hr8_A* 1hr9_A* Back     alignment and structure
>1hr6_B Beta-MPP, mitochondrial processing peptidase beta subunit; hxxeh zinc-binding motif, hydrolase; HET: EPE; 2.50A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1hr7_B 1hr8_B* 1hr9_B* Back     alignment and structure
>3ami_A Zinc peptidase; alpha/beta, zinc binding, hydrolase; 2.40A {Sphingomonas} PDB: 3amj_C Back     alignment and structure
>1pp9_A Ubiquinol-cytochrome C reductase complex core Pro mitochondrial; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: d.185.1.1 d.185.1.1 PDB: 1bgy_A* 1be3_A* 1l0n_A* 1ntk_A* 1ntm_A* 1ntz_A* 1nu1_A* 1l0l_A* 1ppj_A* 1sqq_A* 1sqv_A* 1sqx_A* 2a06_A* 2fyu_A* 2ybb_A* 1sqb_A* 1sqp_A* 1qcr_A* 1bcc_A* 2bcc_A* ... Back     alignment and structure
>3gwb_A Peptidase M16 inactive domain family protein; peptidase M16 family, PFL_5859, structural genomics, PSI-2, structure initiative; 1.90A {Pseudomonas fluorescens} Back     alignment and structure
>3amj_B Zinc peptidase inactive subunit; alpha/beta, zinc binding, hydrolase; 3.00A {Sphingomonas} Back     alignment and structure
>1pp9_B Ubiquinol-cytochrome C reductase complex core Pro mitochondrial; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: d.185.1.1 d.185.1.1 PDB: 1bgy_B* 1be3_B* 1l0n_B* 1ntk_B* 1ntm_B* 1ntz_B* 1nu1_B* 1l0l_B* 1ppj_B* 1sqq_B* 1sqv_B* 1sqx_B* 2a06_B* 2fyu_B* 2ybb_B* 1sqb_B* 1sqp_B* 1qcr_B* 2bcc_B* 3bcc_B* ... Back     alignment and structure
>3cx5_A Cytochrome B-C1 complex subunit 1, mitochondrial; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1p84_A* 2ibz_A* 1kb9_A* 3cxh_A* 1ezv_A* 1kyo_A* Back     alignment and structure
>1q2l_A Protease III; hydrolase; 2.20A {Escherichia coli str} SCOP: d.185.1.1 d.185.1.1 d.185.1.1 d.185.1.1 Back     alignment and structure
>3d3y_A Uncharacterized protein; APC29635, conserved protein, enterococcus faecalis V583, STR genomics, PSI-2, protein structure initiative; 1.95A {Enterococcus faecalis} Back     alignment and structure
>3go9_A Insulinase family protease; IDP00573, structural genomics, for structural genomics of infectious diseases, csgid, HYDR; HET: MSE; 1.62A {Yersinia pestis} Back     alignment and structure
>3cww_A Insulysin, insulin-degrading enzyme, insulinase; A-beta degrading enzyme, criptidase, kinins, hydrolase; 1.96A {Homo sapiens} PDB: 3ofi_A 2wc0_A 3h44_A 3n56_A 3n57_A 2wby_A 3qz2_A 3e4z_A 2wk3_A 3e4a_A* 2g47_A 2g48_A 2g49_A 2g54_A 2g56_A 2jbu_A 3e50_A 2jg4_A 3hgz_A 2yb3_A* ... Back     alignment and structure
>3s5m_A Falcilysin; M16 metalloprotease, peptidase, hydrolase; 1.55A {Plasmodium falciparum} PDB: 3s5i_A 3s5k_A 3s5h_A Back     alignment and structure
>3cx5_B Cytochrome B-C1 complex subunit 2, mitochondrial; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1kb9_B* 1kyo_B* 1p84_B* 2ibz_B* 1ezv_B* 3cxh_B* Back     alignment and structure
>2fge_A Atprep2;, zinc metalloprotease (insulinase family); peptidasome, protease-peptide complex, hydrolase, plant protein; 2.10A {Arabidopsis thaliana} SCOP: d.185.1.1 d.185.1.1 d.185.1.1 d.185.1.1 Back     alignment and structure
>2fge_A Atprep2;, zinc metalloprotease (insulinase family); peptidasome, protease-peptide complex, hydrolase, plant protein; 2.10A {Arabidopsis thaliana} SCOP: d.185.1.1 d.185.1.1 d.185.1.1 d.185.1.1 Back     alignment and structure
>1q2l_A Protease III; hydrolase; 2.20A {Escherichia coli str} SCOP: d.185.1.1 d.185.1.1 d.185.1.1 d.185.1.1 Back     alignment and structure
>3cww_A Insulysin, insulin-degrading enzyme, insulinase; A-beta degrading enzyme, criptidase, kinins, hydrolase; 1.96A {Homo sapiens} PDB: 3ofi_A 2wc0_A 3h44_A 3n56_A 3n57_A 2wby_A 3qz2_A 3e4z_A 2wk3_A 3e4a_A* 2g47_A 2g48_A 2g49_A 2g54_A 2g56_A 2jbu_A 3e50_A 2jg4_A 3hgz_A 2yb3_A* ... Back     alignment and structure
>3s5m_A Falcilysin; M16 metalloprotease, peptidase, hydrolase; 1.55A {Plasmodium falciparum} PDB: 3s5i_A 3s5k_A 3s5h_A Back     alignment and structure
>3ih6_A Putative zinc protease; bordetella pertussis tohama I, struc genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; 2.15A {Bordetella pertussis} PDB: 3ivl_A Back     alignment and structure
>3ih6_A Putative zinc protease; bordetella pertussis tohama I, struc genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; 2.15A {Bordetella pertussis} PDB: 3ivl_A Back     alignment and structure
>3hdi_A Processing protease; CAGE structure, M16B peptidase, metallopeptidase, peptidasome, protease, hydrolase; 2.70A {Bacillus halodurans c-125} Back     alignment and structure
>1hr6_B Beta-MPP, mitochondrial processing peptidase beta subunit; hxxeh zinc-binding motif, hydrolase; HET: EPE; 2.50A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1hr7_B 1hr8_B* 1hr9_B* Back     alignment and structure
>3cx5_A Cytochrome B-C1 complex subunit 1, mitochondrial; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1p84_A* 2ibz_A* 1kb9_A* 3cxh_A* 1ezv_A* 1kyo_A* Back     alignment and structure
>3eoq_A Putative zinc protease; two similar domains of beta(2)-alpha(2)-beta(2)-alpha(5)- beta structure, hydrolase; 2.29A {Thermus thermophilus} Back     alignment and structure
>3amj_B Zinc peptidase inactive subunit; alpha/beta, zinc binding, hydrolase; 3.00A {Sphingomonas} Back     alignment and structure
>1pp9_A Ubiquinol-cytochrome C reductase complex core Pro mitochondrial; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: d.185.1.1 d.185.1.1 PDB: 1bgy_A* 1be3_A* 1l0n_A* 1ntk_A* 1ntm_A* 1ntz_A* 1nu1_A* 1l0l_A* 1ppj_A* 1sqq_A* 1sqv_A* 1sqx_A* 2a06_A* 2fyu_A* 2ybb_A* 1sqb_A* 1sqp_A* 1qcr_A* 1bcc_A* 2bcc_A* ... Back     alignment and structure
>1hr6_A Alpha-MPP, mitochondrial processing peptidase alpha subunit; hxxeh zinc-binding motif, hydrolase; HET: EPE; 2.50A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1hr7_A 1hr8_A* 1hr9_A* Back     alignment and structure
>3gwb_A Peptidase M16 inactive domain family protein; peptidase M16 family, PFL_5859, structural genomics, PSI-2, structure initiative; 1.90A {Pseudomonas fluorescens} Back     alignment and structure
>1pp9_B Ubiquinol-cytochrome C reductase complex core Pro mitochondrial; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: d.185.1.1 d.185.1.1 PDB: 1bgy_B* 1be3_B* 1l0n_B* 1ntk_B* 1ntm_B* 1ntz_B* 1nu1_B* 1l0l_B* 1ppj_B* 1sqq_B* 1sqv_B* 1sqx_B* 2a06_B* 2fyu_B* 2ybb_B* 1sqb_B* 1sqp_B* 1qcr_B* 2bcc_B* 3bcc_B* ... Back     alignment and structure
>3ami_A Zinc peptidase; alpha/beta, zinc binding, hydrolase; 2.40A {Sphingomonas} PDB: 3amj_C Back     alignment and structure
>3d3y_A Uncharacterized protein; APC29635, conserved protein, enterococcus faecalis V583, STR genomics, PSI-2, protein structure initiative; 1.95A {Enterococcus faecalis} Back     alignment and structure
>3go9_A Insulinase family protease; IDP00573, structural genomics, for structural genomics of infectious diseases, csgid, HYDR; HET: MSE; 1.62A {Yersinia pestis} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 400
d1ppjb1219 d.185.1.1 (B:17-235) Cytochrome bc1 core subunit 2 1e-34
d1hr6a1220 d.185.1.1 (A:14-233) Mitochondrial processing pept 2e-27
d3cx5b1202 d.185.1.1 (B:17-218) Cytochrome bc1 core subunit 2 1e-26
d1ppja1232 d.185.1.1 (A:2-233) Cytochrome bc1 core subunit 1 2e-23
d1hr6b1222 d.185.1.1 (B:24-245) Mitochondrial processing pept 2e-21
d3cx5a1213 d.185.1.1 (A:27-239) Cytochrome bc1 core subunit 1 2e-20
d1q2la4240 d.185.1.1 (A:24-263) Protease III {Escherichia col 5e-15
d2fgea4257 d.185.1.1 (A:15-271) Presequence protease 1, PREP1 2e-12
d3cx5a2 218 d.185.1.1 (A:240-457) Cytochrome bc1 core subunit 1e-07
d1ppjb2204 d.185.1.1 (B:236-439) Cytochrome bc1 core subunit 1e-06
d1hr6b2 217 d.185.1.1 (B:246-462) Mitochondrial processing pep 8e-06
d1hr6a2 237 d.185.1.1 (A:234-470) Mitochondrial processing pep 4e-05
d1ppja2 209 d.185.1.1 (A:234-442) Cytochrome bc1 core subunit 9e-05
>d1ppjb1 d.185.1.1 (B:17-235) Cytochrome bc1 core subunit 2 {Cow (Bos taurus) [TaxId: 9913]} Length = 219 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: LuxS/MPP-like metallohydrolase
superfamily: LuxS/MPP-like metallohydrolase
family: MPP-like
domain: Cytochrome bc1 core subunit 2
species: Cow (Bos taurus) [TaxId: 9913]

 Score =  125 bits (315), Expect = 1e-34
 Identities = 71/215 (33%), Positives = 118/215 (54%), Gaps = 6/215 (2%)

Query: 66  LPPSLPDYVEPGKTKISTLPNGVKIASETSVSPVASISLYVGCGSIYESPISFGTTHLLE 125
           +PP       P   + + LPNG+ IAS  + +P + I L++  GS YE+  + GT+HLL 
Sbjct: 1   VPPH------PQDLEFTRLPNGLVIASLENYAPASRIGLFIKAGSRYENSNNLGTSHLLR 54

Query: 126 RMAFRSTRNRSHLRIVREVEAIGGNVQASASREQMGYSFDALKTYVPEMVELLIDCVRNP 185
             +  +T+  S  +I R +EA+GG +  +++RE M Y+ + L+  V  ++E L++    P
Sbjct: 55  LASSLTTKGASSFKITRGIEAVGGKLSVTSTRENMAYTVECLRDDVDILMEFLLNVTTAP 114

Query: 186 VFLDWEVNEQLTKVKSEISEVSNNPQSLLLEAIHSAGYSGALANPLLAPESAINRLNSTL 245
            F  WEV     +++ + +    NPQ+ ++E +H+A Y  ALAN L  P+  I ++    
Sbjct: 115 EFRRWEVAALQPQLRIDKAVALQNPQAHVIENLHAAAYRNALANSLYCPDYRIGKVTPVE 174

Query: 246 LEEFVAENYTGPRMVLAASGVEHDQLVSVAEPLLS 280
           L ++V  ++T  RM L   GV H  L  VAE  L+
Sbjct: 175 LHDYVQNHFTSARMALIGLGVSHPVLKQVAEQFLN 209
>d1hr6a1 d.185.1.1 (A:14-233) Mitochondrial processing peptidase (MPP) alpha chain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 220 Back     information, alignment and structure
>d3cx5b1 d.185.1.1 (B:17-218) Cytochrome bc1 core subunit 2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 202 Back     information, alignment and structure
>d1ppja1 d.185.1.1 (A:2-233) Cytochrome bc1 core subunit 1 {Cow (Bos taurus) [TaxId: 9913]} Length = 232 Back     information, alignment and structure
>d1hr6b1 d.185.1.1 (B:24-245) Mitochondrial processing peptidase (MPP) beta chain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 222 Back     information, alignment and structure
>d3cx5a1 d.185.1.1 (A:27-239) Cytochrome bc1 core subunit 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 213 Back     information, alignment and structure
>d1q2la4 d.185.1.1 (A:24-263) Protease III {Escherichia coli [TaxId: 562]} Length = 240 Back     information, alignment and structure
>d2fgea4 d.185.1.1 (A:15-271) Presequence protease 1, PREP1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 257 Back     information, alignment and structure
>d3cx5a2 d.185.1.1 (A:240-457) Cytochrome bc1 core subunit 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 218 Back     information, alignment and structure
>d1ppjb2 d.185.1.1 (B:236-439) Cytochrome bc1 core subunit 2 {Cow (Bos taurus) [TaxId: 9913]} Length = 204 Back     information, alignment and structure
>d1hr6b2 d.185.1.1 (B:246-462) Mitochondrial processing peptidase (MPP) beta chain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 217 Back     information, alignment and structure
>d1hr6a2 d.185.1.1 (A:234-470) Mitochondrial processing peptidase (MPP) alpha chain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 237 Back     information, alignment and structure
>d1ppja2 d.185.1.1 (A:234-442) Cytochrome bc1 core subunit 1 {Cow (Bos taurus) [TaxId: 9913]} Length = 209 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query400
d1hr6a1220 Mitochondrial processing peptidase (MPP) alpha cha 100.0
d1ppja1232 Cytochrome bc1 core subunit 1 {Cow (Bos taurus) [T 100.0
d1ppjb1219 Cytochrome bc1 core subunit 2 {Cow (Bos taurus) [T 100.0
d1hr6b1222 Mitochondrial processing peptidase (MPP) beta chai 100.0
d1q2la4240 Protease III {Escherichia coli [TaxId: 562]} 100.0
d3cx5a1213 Cytochrome bc1 core subunit 1 {Baker's yeast (Sacc 100.0
d3cx5b1202 Cytochrome bc1 core subunit 2 {Baker's yeast (Sacc 99.97
d2fgea4257 Presequence protease 1, PREP1 {Thale cress (Arabid 99.95
d1q2la1229 Protease III {Escherichia coli [TaxId: 562]} 99.89
d2fgea1258 Presequence protease 1, PREP1 {Thale cress (Arabid 99.44
d1ppjb2 204 Cytochrome bc1 core subunit 2 {Cow (Bos taurus) [T 99.19
d1hr6b2 217 Mitochondrial processing peptidase (MPP) beta chai 99.11
d1hr6a2 237 Mitochondrial processing peptidase (MPP) alpha cha 99.06
d3cx5a2 218 Cytochrome bc1 core subunit 1 {Baker's yeast (Sacc 98.9
d1ppja2 209 Cytochrome bc1 core subunit 1 {Cow (Bos taurus) [T 98.9
d1ppjb2204 Cytochrome bc1 core subunit 2 {Cow (Bos taurus) [T 98.86
d1hr6b2217 Mitochondrial processing peptidase (MPP) beta chai 98.73
d1ppja2209 Cytochrome bc1 core subunit 1 {Cow (Bos taurus) [T 98.66
d1hr6a2237 Mitochondrial processing peptidase (MPP) alpha cha 98.65
d2fgea2 196 Presequence protease 1, PREP1 {Thale cress (Arabid 98.53
d3cx5a2218 Cytochrome bc1 core subunit 1 {Baker's yeast (Sacc 98.46
d2fgea2196 Presequence protease 1, PREP1 {Thale cress (Arabid 97.79
d1q2la2228 Protease III {Escherichia coli [TaxId: 562]} 97.6
d1q2la2 228 Protease III {Escherichia coli [TaxId: 562]} 97.1
d3cx5b2150 Cytochrome bc1 core subunit 2 {Baker's yeast (Sacc 91.8
d2fgea3 268 Presequence protease 1, PREP1 {Thale cress (Arabid 85.25
d2fgea3268 Presequence protease 1, PREP1 {Thale cress (Arabid 84.05
d1q2la3 240 Protease III {Escherichia coli [TaxId: 562]} 80.57
>d1hr6a1 d.185.1.1 (A:14-233) Mitochondrial processing peptidase (MPP) alpha chain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: LuxS/MPP-like metallohydrolase
superfamily: LuxS/MPP-like metallohydrolase
family: MPP-like
domain: Mitochondrial processing peptidase (MPP) alpha chain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=3.2e-38  Score=279.38  Aligned_cols=211  Identities=32%  Similarity=0.518  Sum_probs=204.7

Q ss_pred             CceEEEEcCCCcEEEEEeCCCCEEEEEEEEcccccCCCCCCCcHHHHHHHHHhccCCCCChHHHHHHHHHcCCeeEEEec
Q 015795           77 GKTKISTLPNGVKIASETSVSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVREVEAIGGNVQASAS  156 (400)
Q Consensus        77 ~~~~~~~L~NG~~v~~~~~~~~~~~i~l~~~~G~~~e~~~~~g~a~ll~~l~~~gt~~~s~~~l~~~l~~~g~~~~~~~~  156 (400)
                      ..+++.+|+||++|+..+.+++.+++++++++|+++|++...|++|++++|++.||.+++..++.+.++..|+.++++++
T Consensus         4 ~~~~~~~L~NGl~v~~~~~~~~~~~v~l~~~~G~~~e~~~~~G~a~ll~~ll~~gt~~~~~~~~~~~~~~~g~~~~~~~~   83 (220)
T d1hr6a1           4 DNFKLSSLANGLKVATSNTPGHFSALGLYIDAGSRFEGRNLKGCTHILDRLAFKSTEHVEGRAMAETLELLGGNYQCTSS   83 (220)
T ss_dssp             TCCEEEECTTSCEEEEESCCCSSEEEEEEESCCGGGCTTTTTTHHHHHHHTTTSCBTTBCHHHHHHHHHHTTSCEEEEEC
T ss_pred             CCceEEEcCCCCEEEEEeCCCCEEEEEEEEcccccccCCCCchHHHHHHHHHhccccccchHHHHHHHHHhcchhhhccc
Confidence            46899999999999999999899999999999999999999999999999999999999999999999999999999999


Q ss_pred             cceEEEEEEecCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhc-CCCCCCCCCCCh
Q 015795          157 REQMGYSFDALKTYVPEMVELLIDCVRNPVFLDWEVNEQLTKVKSEISEVSNNPQSLLLEAIHSAGY-SGALANPLLAPE  235 (400)
Q Consensus       157 ~~~~~~~~~~~~~~l~~~l~ll~~~l~~p~f~~~~~~~~k~~~~~~l~~~~~~p~~~~~~~l~~~~~-~~p~~~~~~~~~  235 (400)
                      .+++.|.+++++++++.+|++|.+++.+|.|++++++++|+.+.++++...++|...+.+.+++.+| ++||+++..|++
T Consensus        84 ~~~~~~~~~~~~~~~~~~l~ll~~~l~~p~~~~~~~~~ek~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~g~~  163 (220)
T d1hr6a1          84 RENLMYQASVFNQDVGKMLQLMSETVRFPKITEQELQEQKLSAEYEIDEVWMKPELVLPELLHTAAYSGETLGSPLICPR  163 (220)
T ss_dssp             SSCEEEEEEECGGGHHHHHHHHHHHHHCBCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTSGGGSCSSCCG
T ss_pred             ccceeeeccccccccchhhhhhhHhhhcccchhhhhhhhcchhhhhhhhhhccchhhhhhhhccccccccCCcccccccH
Confidence            9999999999999999999999999999999999999999999999999999999999999999999 999999998999


Q ss_pred             HhhcccCHHHHHHHHHhhcCCCCeEEEEEcCCHHHHHHHHHhhcCCCCCCCC
Q 015795          236 SAINRLNSTLLEEFVAENYTGPRMVLAASGVEHDQLVSVAEPLLSDLPSIHP  287 (400)
Q Consensus       236 ~~l~~it~~~l~~f~~~~~~~~~~~l~vvGv~~~~l~~lv~~~~~~l~~~~~  287 (400)
                      ++|++++.++|++||+++|.|+||+|+|+|+++++++++++++|++||...+
T Consensus       164 ~~i~~it~~dl~~f~~~~y~~~n~~l~i~G~~~~~~~~~i~~~fg~~~~~~~  215 (220)
T d1hr6a1         164 GLIPSISKYYLLDYRNKFYTPENTVAAFVGVPHEKALELTGKYLGDWQSTHP  215 (220)
T ss_dssp             GGGGGCCHHHHHHHHHHHCCGGGEEEEEESSCHHHHHHHHHHHHTTCCCCCC
T ss_pred             HHHhhCCHHHHHHHHHHhCCcccEEEEEECCCHHHHHHHHHHHhcCCCCCCC
Confidence            9999999999999999999999999999999999999999999999997654
>d1ppja1 d.185.1.1 (A:2-233) Cytochrome bc1 core subunit 1 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1ppjb1 d.185.1.1 (B:17-235) Cytochrome bc1 core subunit 2 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1hr6b1 d.185.1.1 (B:24-245) Mitochondrial processing peptidase (MPP) beta chain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1q2la4 d.185.1.1 (A:24-263) Protease III {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d3cx5a1 d.185.1.1 (A:27-239) Cytochrome bc1 core subunit 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d3cx5b1 d.185.1.1 (B:17-218) Cytochrome bc1 core subunit 2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2fgea4 d.185.1.1 (A:15-271) Presequence protease 1, PREP1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1q2la1 d.185.1.1 (A:504-732) Protease III {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2fgea1 d.185.1.1 (A:540-797) Presequence protease 1, PREP1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1ppjb2 d.185.1.1 (B:236-439) Cytochrome bc1 core subunit 2 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1hr6b2 d.185.1.1 (B:246-462) Mitochondrial processing peptidase (MPP) beta chain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1hr6a2 d.185.1.1 (A:234-470) Mitochondrial processing peptidase (MPP) alpha chain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d3cx5a2 d.185.1.1 (A:240-457) Cytochrome bc1 core subunit 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1ppja2 d.185.1.1 (A:234-442) Cytochrome bc1 core subunit 1 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1ppjb2 d.185.1.1 (B:236-439) Cytochrome bc1 core subunit 2 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1hr6b2 d.185.1.1 (B:246-462) Mitochondrial processing peptidase (MPP) beta chain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1ppja2 d.185.1.1 (A:234-442) Cytochrome bc1 core subunit 1 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1hr6a2 d.185.1.1 (A:234-470) Mitochondrial processing peptidase (MPP) alpha chain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2fgea2 d.185.1.1 (A:798-993) Presequence protease 1, PREP1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d3cx5a2 d.185.1.1 (A:240-457) Cytochrome bc1 core subunit 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2fgea2 d.185.1.1 (A:798-993) Presequence protease 1, PREP1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1q2la2 d.185.1.1 (A:733-960) Protease III {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1q2la2 d.185.1.1 (A:733-960) Protease III {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d3cx5b2 d.185.1.1 (B:219-368) Cytochrome bc1 core subunit 2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2fgea3 d.185.1.1 (A:272-539) Presequence protease 1, PREP1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d2fgea3 d.185.1.1 (A:272-539) Presequence protease 1, PREP1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1q2la3 d.185.1.1 (A:264-503) Protease III {Escherichia coli [TaxId: 562]} Back     information, alignment and structure