Citrus Sinensis ID: 015842

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------40
Protein Sequence
MASYAMEDFVGNGVLKGQLPKLLEEGWDDVPTLKDALEIRSYLHDRALMQYADIFEASGKSLPELLNLSTGDLSSQFGMKRGHMARFKDRTSACSDPMPKSDTLTARNNSSIPSRNNSIYKSYTSIKSTKMQSVRSSLSRTGANKSLEQSLADFKIKDGYTFKGIVAAGPAVPRVCGCIQAPPVNEKVAPYSAIENISIQKLTPEYKIGMERLVKTKTPPMKALELWRESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLHEYIESEVKDFWPRYWGGVVVYDQGMEFFKALGGGKLLKDKFLSGFLLNPRAIANYKRARTLGVEQNFKGEGEIKGGLFIVGRGRSGIAYQFIERNFGDWAPLAEVIEICTQLQDQQRDQSETIKTSQE
Secondary Structure (PSIPRED)
cccccHHHHHHcccccccHHHHHHHcccccccHHHHHHHHHHHcHHHHHHHHHHHHHccccHHHHHcccccccHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHccccccccccccccccccccccccEEEEEEcccccccHHHHHHHHHccccHHHHccccEEEEEcccHHHHHHcccccccccEEEEcccHHHHHHHcccccccccccccccccHHHHHHHHHHHHcccccccccccEEEcEEEEEEcccccEEEEEccccccccccHHHHHHHHHHHccccccHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
cccHHHHHHHccHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHcccccHHHHHcccccccEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHccccccEcccccEEEEEEcccccccccccccccccccccccccccHHHHHHHHHcHHHHcccccccccccccEEHHHHHHcccEEEEEEEccccHHHHHHHHHHHHHHHHHHHccccEEEEEccccHHHHHHccccccccEEEEccccHHHHHcccccccccccHHHHHccHHHHHHHHHHHHcccccccccccEEEcEEEEEcccccEEEEEEEEccccccccHHHHHHHHHHHcccccccccHHHHHcc
Coil and Loop (DISEMBL)
MASYAMedfvgngvlkgqlpklleegwddvptlKDALEIRSYLHDRALMQYADIFEASGkslpellnlstgdlssqfgmkrghmarfkdrtsacsdpmpksdtltarnnssipsrnnsiYKSYTSIKSTKMQSVRSSLSRTGANKSLEQSLADfkikdgytfkgivaagpavprvcgciqappvnekvapysaienisiqkltpeykiGMERlvktktppmkalelwRESPAVLlcirrpgcimcRAEAHQLYAKKPIFDALGIQLFAVLHEYIESEvkdfwprywggvvVYDQGMEFFKAlgggkllkdkflsgfllnpraIANYKRARTLgveqnfkgegeikgglfivgrgrsgiAYQFIernfgdwapLAEVIEICTQLQDQQRDQSETIKTSQE
Flexible Loop (DISEMBL)
MASYAmedfvgngvLKGQLPKLLEEGWDDVPTLKDALEIRSYLHDRALMQYADIFEASGKSLPELLNLSTGDLSSQFGMKRGHMARFKdrtsacsdpmpksdtltarnnssipsrnnsiYKSYTSIKSTKMQSVRSSLsrtgankslEQSLADFKIKDGYTFKGIVAAGPAVPRVCGCIQAPPVNEKVAPYSAIEnisiqkltpeykIGMERLVKTKTPPMKALELWRESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLHEYIESEVKDFWPRYWGGVVVYDQGMEFFKALGGGKLLKDKFLSGFLLNPRAIANYKRARTLGveqnfkgegeikgglfIVGRGRSGIAYQFIERNFGDWAPLAEVIEICTQLQDQQRDQSETIKTSQE
Low Complexity Region (SEG)
MASYAMEDFVGNGVLKGQLPKLLEEGWDDVPTLKDALEIRSYLHDRALMQYADIFEASGKSLPELLNLSTGDLSSQFGMKRGHMARFKDRTSACSDPMPKSDTLTArnnssipsrnnsiYKSYTSIKSTKMQSVRSSLSRTGANKSLEQSLADFKIKDGYTFKGIVAAGPAVPRVCGCIQAPPVNEKVAPYSAIENISIQKLTPEYKIGMERLVKTKTPPMKALELWRESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLHEYIESEVKDFWPRYWGGVVVYDQGMEffkalgggkllkdkflsgfllNPRAIANYKRARTLGVEQNFKGEGEIKGGLFIVGRGRSGIAYQFIERNFGDWAPLAEVIEICTQLQDQQRDQSETIKTSQE
Disordered region (IsUnstruct)
*******DFVGNGVLKGQLPKLLEEGWDDVPTLKDALEIRSYLHDRALMQYADIFEAS********************************************************************************************LADFKIKDGYTFKGIVAAGPAVPRVCGCIQAPPVNEKVAPYSAIENISIQKLTPEYKIGMERLVKTKTPPMKALELWRESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLHEYIESEVKDFWPRYWGGVVVYDQGMEFFKALGGGKLLKDKFLSGFLLNPRAIANYKRARTLGVEQNFKGEGEIKGGLFIVGRGRSGIAYQFIERNFGDWAPLAEVIEICTQL****************
Disordered Region (DISOPRED)
**SYAMEDFVGNGVLKGQLPKLLEEGWDDVPTLKDALEIRSYLHDRALMQYADIFEASGKSLPELLN*****LSSQFGMKRGHMARFK*****************************************************************************************************************LTPEYKIGMERLVK**TPPMKALELWRESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLHEYIESEVKDFWPRYWGGVVVYDQGMEFFKALGGGKLLKDKFLSGFLLNPRAIANYKRARTLGVEQNFKGEGEIKGGLFIVGRGRSGIAYQFIERNFGDWAPLAEVIEI********************
Disordered Region (DISEMBL)
MASYAMEDFVGNGVLKGQLPKLLEEGWDDVPTLKDALEIRSYLHDRALMQYADIFEASGKSLPELLNLSTGDLSSQFGMKRGHMARFKDRTSACSDPMPKSDTLTARNNSSIPSRNNSIYKSYTSI******************KSLEQSLADFKIKDGYTFKGIVAAGPAVPRVCGCIQAPPVNEKVAPYSAIENISIQKLTPEYKIGMERLVKTKTPPMKALELWRESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLHEYIESEVKDFWPRYWGGVVVYDQGMEFFKALGGGKLLKDKFLSGFLLNPRAIANYKRARTLGVEQNFKGEGEIKGGLFIVGRGRSGIAYQFIERNFGDWAPLAEVIEICTQL****************
Disordered Region (DISPRO)
**SYAMEDFVGNGVLKGQLPKLLEEGWDDVPTLKDALEIRSYLHDRALMQYADIFEASGKSLPELLNLSTGDLSSQFGMKRGHMARFKDRTSACSDPMPKSDTLT*****************************************L*QSLADFKIKDGYTFKGIVAAGPAVPRVCGCIQAPPVNEKVAPYSAIENISIQKLTPEYKIGMERLVKTKTPPMKALELWRESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLHEYIESEVKDFWPRYWGGVVVYDQGMEFFKALGGGKLLKDKFLSGFLLNPRAIANYKRARTLGVEQNFKGEGEIKGGLFIVGRGRSGIAYQFIERNFGDWAPLAEVIEICTQLQD**************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MASYAMEDFVGNGVLKGQLPKLLEEGWDDVPTLKDALEIRSYLHDRALMQYADIFEASGKSLPELLNLSTGDLSSQFGMKRGHMARFKDRTSACSDPMPKSDTLTARNNSSIPSRNNSIYKSYTSIKSTKMQSVRSSLSRTGANKSLEQSLADFKIKDGYTFKGIVAAGPAVPRVCGCIQAPPVNEKVAPYSAIENISIQKLTPEYKIGMERLVKTKTPPMKALELWRESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLHEYIESEVKDFWPRYWGGVVVYDQGMEFFKALGGGKLLKDKFLSGFLLNPRAIANYKRARTLGVEQNFKGEGEIKGGLFIVGRGRSGIAYQFIERNFGDWAPLAEVIEICTQLQDQQRDQSETIKTSQE
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	399	2.2.26 [Sep-21-2011]
Q9BRX8	229	Redox-regulatory protein	yes	no	0.451	0.786	0.372	2e-24
Q6AXX6	229	Redox-regulatory protein	yes	no	0.451	0.786	0.372	3e-24
Q3ZBK2	218	Redox-regulatory protein	yes	no	0.398	0.729	0.379	8e-24
A0JPD7	227	Redox-regulatory protein	yes	no	0.413	0.726	0.375	1e-23
Q641F0	227	Redox-regulatory protein	N/A	no	0.398	0.700	0.379	4e-23
Q9CYH2	218	Redox-regulatory protein	yes	no	0.398	0.729	0.379	1e-22
Q5ZI34	224	Redox-regulatory protein	yes	no	0.451	0.803	0.345	1e-21
Q6PBP3	212	Redox-regulatory protein	yes	no	0.380	0.716	0.347	3e-20
Q58CY6	201	Prostamide/prostaglandin	no	no	0.360	0.716	0.287	7e-12
Q8TBF2	198	Prostamide/prostaglandin	no	no	0.363	0.732	0.267	2e-11

>sp|Q9BRX8|F213A_HUMAN Redox-regulatory protein FAM213A OS=Homo sapiens GN=FAM213A PE=1 SV=3

 Score =  114 bits (284), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 70/188 (37%), Positives = 102/188 (54%), Gaps = 8/188 (4%)

Query: 200 QKLTPEYKIGMERLVKTKTP-PMKALELWRESPAVLLCIRRPGCIMCRAEAHQLYAKKPI 258
           QK   EY   ++     K P   KA ELW ++ AV++ +RRPGC +CR EA  L + K +
Sbjct: 42  QKAALEYLEDIDLKTLEKEPRTFKAKELWEKNGAVIMAVRRPGCFLCREEAADLSSLKSM 101

Query: 259 FDALGIQLFAVLHEYIESEVKDFWPRYWGGVVVYDQGMEFFKALGGGKLLKDKFLSGFLL 318
            D LG+ L+AV+ E+I +EVKDF P Y+ G +  D+  +F+     G   +     GF +
Sbjct: 102 LDQLGVPLYAVVKEHIRTEVKDFQP-YFKGEIFLDEKKKFY-----GPQRRKMMFMGF-I 154

Query: 319 NPRAIANYKRARTLGVEQNFKGEGEIKGGLFIVGRGRSGIAYQFIERNFGDWAPLAEVIE 378
                 N+ RA   G   N +GEG I GG+F+VG G+ GI  +  E+ FGD   L  V+E
Sbjct: 155 RLGVWYNFFRAWNGGFSGNLEGEGFILGGVFVVGSGKQGILLEHREKEFGDKVNLLSVLE 214

Query: 379 ICTQLQDQ 386
               ++ Q
Sbjct: 215 AAKMIKPQ 222

Involved in redox regulation of the cell. Acts as an antioxidant. Inhibits TNFSF11-induced NFKB1 and JUN activation and osteoclast differentiation. May affect bone resorption and help to maintain bone mass.
Homo sapiens (taxid: 9606)

>sp|Q6AXX6|F213A_RAT Redox-regulatory protein FAM213A OS=Rattus norvegicus GN=Fam213a PE=1 SV=1

 Score =  113 bits (282), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 70/188 (37%), Positives = 104/188 (55%), Gaps = 8/188 (4%)

Query: 200 QKLTPEYKIGMERLVKTKTP-PMKALELWRESPAVLLCIRRPGCIMCRAEAHQLYAKKPI 258
           QK   EY   ++     K P   KA ELW ++ AV++ +RRPGC +CRAEA  L + KP 
Sbjct: 42  QKAALEYLEDIDLKTLEKEPRTFKAKELWEKNGAVIMAVRRPGCFLCRAEAADLMSLKPK 101

Query: 259 FDALGIQLFAVLHEYIESEVKDFWPRYWGGVVVYDQGMEFFKALGGGKLLKDKFLSGFLL 318
            D LG+ L+AV+ E ++ EV+DF P Y+ G +  D+  +F+     G   +   L G L+
Sbjct: 102 LDELGVPLYAVVKEKVKREVEDFQP-YFKGEIFLDEKKKFY-----GPERRKMMLMG-LV 154

Query: 319 NPRAIANYKRARTLGVEQNFKGEGEIKGGLFIVGRGRSGIAYQFIERNFGDWAPLAEVIE 378
                 N  RA   G   NF+GEG I GG+F++G G+ G+  +  E+ FGD   L  V+E
Sbjct: 155 RLGVWYNSFRAWKGGFSGNFEGEGFILGGVFVIGSGKQGVLLEHREKEFGDRVNLLSVLE 214

Query: 379 ICTQLQDQ 386
              +++ Q
Sbjct: 215 AVKKIKPQ 222

Involved in redox regulation of the cell. Acts as an antioxidant. Inhibits TNFSF11-induced NFKB1 and JUN activation and osteoclast differentiation. May affect bone resorption and help to maintain bone mass.

Rattus norvegicus (taxid: 10116)

>sp|Q3ZBK2|F213A_BOVIN Redox-regulatory protein FAM213A OS=Bos taurus GN=FAM213A PE=2 SV=1

 Score =  111 bits (278), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 63/166 (37%), Positives = 94/166 (56%), Gaps = 7/166 (4%)

Query: 221 MKALELWRESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLHEYIESEVKD 280
            KA  LW ++ AV++ +RRPGC +CR EA  L + KP  D LG+ L+AV+ E+I++EVKD
Sbjct: 53  FKAKALWEKNGAVIMAVRRPGCFLCREEATDLSSLKPKLDELGVPLYAVVKEHIKNEVKD 112

Query: 281 FWPRYWGGVVVYDQGMEFFKALGGGKLLKDKFLSGFLLNPRAIANYKRARTLGVEQNFKG 340
           F P Y+ G +  D+  +F+     G   +     GF +      N+ RA   G   N  G
Sbjct: 113 FQP-YFKGEIFLDENKKFY-----GPQRRKMMFMGF-VRLGVWQNFFRAWNGGFSGNLDG 165

Query: 341 EGEIKGGLFIVGRGRSGIAYQFIERNFGDWAPLAEVIEICTQLQDQ 386
           EG I GG+F++G G+ GI  +  E+ FGD   L  V+E   +++ Q
Sbjct: 166 EGFILGGVFVMGPGKQGILLEHREKEFGDKVNLTSVLEAARKIRPQ 211

Involved in redox regulation of the cell. Acts as an antioxidant. Inhibits TNFSF11-induced NFKB1 and JUN activation and osteoclast differentiation. May affect bone resorption and help to maintain bone mass.

Bos taurus (taxid: 9913)

>sp|A0JPD7|F213A_XENTR Redox-regulatory protein FAM213A OS=Xenopus tropicalis GN=fam213a PE=2 SV=1

 Score =  111 bits (278), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 65/173 (37%), Positives = 102/173 (58%), Gaps = 8/173 (4%)

Query: 221 MKALELWRESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLHEYIESEVKD 280
            KA +LW ++ AV++ +RRPGC +CR EA  L + K   D LG+ L+AV+ E I +EV+ 
Sbjct: 63  FKAKDLWEKNGAVVMAVRRPGCFLCREEASDLSSLKSQLDQLGVPLYAVVKENIGNEVEQ 122

Query: 281 FWPRYWGGVVVYDQGMEFFKALGGGKLLKDKFLSGFLLNPRAIANYKRARTLGVEQNFKG 340
           F P Y+ G +  D+  +F+    G +  K  FL   L+      N++RA   G E N +G
Sbjct: 123 FQP-YFNGKIFLDEKGKFY----GPQKRKMMFLG--LVRLGVWQNFRRAWKGGFEGNLEG 175

Query: 341 EGEIKGGLFIVGRGRSGIAYQFIERNFGDWAPLAEVIEICTQLQDQQRDQSET 393
           EG I GG+F++G G+ GI  +  E+ FGD A L  V++   ++ ++QR Q++ 
Sbjct: 176 EGLILGGMFVIGSGKQGILLEHREKEFGDKANLTAVLDAARKI-NKQRAQNDN 227

Involved in redox regulation of the cell. Acts as an antioxidant.

Xenopus tropicalis (taxid: 8364)

>sp|Q641F0|F213A_XENLA Redox-regulatory protein FAM213A OS=Xenopus laevis GN=fam213a PE=2 SV=2

 Score =  109 bits (272), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 63/166 (37%), Positives = 92/166 (55%), Gaps = 7/166 (4%)

Query: 221 MKALELWRESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLHEYIESEVKD 280
            KA +LW    AV++ +RRPGC +CR EA  L   KP  D LG+ L+A++ E I +EV+ 
Sbjct: 63  FKAKDLWERDGAVIMAVRRPGCFLCREEASGLSTLKPQLDQLGVPLYAIVKENIGNEVEH 122

Query: 281 FWPRYWGGVVVYDQGMEFFKALGGGKLLKDKFLSGFLLNPRAIANYKRARTLGVEQNFKG 340
           F P Y+ G V  D   +F+     G   +   L G L+      N++RA   G E N +G
Sbjct: 123 FQP-YFNGKVFLDAKGQFY-----GPQKRKMMLLG-LVRLGVWQNFRRAWKGGFEGNLEG 175

Query: 341 EGEIKGGLFIVGRGRSGIAYQFIERNFGDWAPLAEVIEICTQLQDQ 386
           EG I GG+F++G G+ GI  +  E+ FGD A L  V++   ++  Q
Sbjct: 176 EGLILGGMFVIGSGKQGILLEHREKEFGDKANLTAVLDAARKISKQ 221

Involved in redox regulation of the cell. Acts as an antioxidant.

Xenopus laevis (taxid: 8355)

>sp|Q9CYH2|F213A_MOUSE Redox-regulatory protein FAM213A OS=Mus musculus GN=Fam213a PE=1 SV=2

 Score =  108 bits (269), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 63/166 (37%), Positives = 95/166 (57%), Gaps = 7/166 (4%)

Query: 221 MKALELWRESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLHEYIESEVKD 280
            KA ELW ++ AV++ +RRPGC +CRAEA  L + KP  D LG+ L+AV+ E ++ EV+D
Sbjct: 53  FKAKELWEKNGAVIMAVRRPGCFLCRAEAADLMSLKPKLDELGVPLYAVVKEQVKREVED 112

Query: 281 FWPRYWGGVVVYDQGMEFFKALGGGKLLKDKFLSGFLLNPRAIANYKRARTLGVEQNFKG 340
           F P Y+ G +  D+  +F+    G +  K  F+   L+      N  RA   G   N +G
Sbjct: 113 FQP-YFKGEIFLDEKKKFY----GPERRKMMFMG--LIRLGVWYNSFRAWNGGFSGNLEG 165

Query: 341 EGEIKGGLFIVGRGRSGIAYQFIERNFGDWAPLAEVIEICTQLQDQ 386
           EG I GG+F++G G+ GI  +  E+ FGD      V+E   +++ Q
Sbjct: 166 EGFILGGVFVIGSGKQGILLEHREKEFGDRVNPLSVLEAVKKIKLQ 211

Involved in redox regulation of the cell. Acts as an antioxidant. Inhibits TNFSF11-induced NFKB1 and JUN activation and osteoclast differentiation. May affect bone resorption and help to maintain bone mass.

Mus musculus (taxid: 10090)

>sp|Q5ZI34|F213A_CHICK Redox-regulatory protein FAM213A OS=Gallus gallus GN=FAM213A PE=2 SV=2

 Score =  104 bits (260), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 65/188 (34%), Positives = 103/188 (54%), Gaps = 8/188 (4%)

Query: 200 QKLTPEYKIGME-RLVKTKTPPMKALELWRESPAVLLCIRRPGCIMCRAEAHQLYAKKPI 258
           +K T E+   +E + + ++    KA ELW+++ AV++ +RRPG  +CR EA +L + KP 
Sbjct: 42  EKATLEFLEAIELKTLGSEPRTFKASELWKKNGAVIMAVRRPGUFLCREEASELSSLKPQ 101

Query: 259 FDALGIQLFAVLHEYIESEVKDFWPRYWGGVVVYDQGMEFFKALGGGKLLKDKFLSGFLL 318
              LG+ L+AV+ E I +EV+DF   Y+ G +  D+   F+     G   +   LSGF  
Sbjct: 102 LSKLGVPLYAVVKEKIGTEVEDF-QHYFQGEIFLDEKRSFY-----GPRKRKMMLSGF-F 154

Query: 319 NPRAIANYKRARTLGVEQNFKGEGEIKGGLFIVGRGRSGIAYQFIERNFGDWAPLAEVIE 378
                 N+ RA   G   N +GEG   GG++++G GR GI  +  E+ FGD   L  V+E
Sbjct: 155 RIGVWQNFFRAWKNGYSGNLEGEGFTLGGVYVIGAGRQGILLEHREKEFGDKVSLPSVLE 214

Query: 379 ICTQLQDQ 386
              +++ Q
Sbjct: 215 AAEKIKPQ 222

Involved in redox regulation of the cell. Acts as an antioxidant. Inhibits TNFSF11-induced NFKB1 and JUN activation and osteoclast differentiation. May affect bone resorption and help to maintain bone mass.

Gallus gallus (taxid: 9031)

>sp|Q6PBP3|F213A_DANRE Redox-regulatory protein FAM213A OS=Danio rerio GN=fam213a PE=2 SV=2

 Score = 99.8 bits (247), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 58/167 (34%), Positives = 91/167 (54%), Gaps = 15/167 (8%)

Query: 221 MKALELWRESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLHEYIESEVKD 280
           +KA  LW +S AV++ +RRPG  +CR EA +L + KP  D LG+ L+AV+ E + +E++D
Sbjct: 53  LKAKALWEKSGAVIMAVRRPGUFLCREEASELSSLKPQLDELGVPLYAVVKENVGTEIQD 112

Query: 281 FWPRYWGGVVVYDQGMEFF----KALGGGKLLKDKFLSGFLLNPRAIANYKRARTLGVEQ 336
           F P +  G +  D+   F+    + +GG          GF +      N+ RA   G + 
Sbjct: 113 FRPHF-AGEIFLDEKQAFYGPQQRKMGG---------LGF-IRLGVWQNFVRAWRAGYQG 161

Query: 337 NFKGEGEIKGGLFIVGRGRSGIAYQFIERNFGDWAPLAEVIEICTQL 383
           N  GEG I GG+F++G G  G+  +  E+ FGD   L  V+E   ++
Sbjct: 162 NMNGEGFILGGVFVMGSGGQGVLLEHREKEFGDKVSLESVLEAAKKV 208

Involved in redox regulation of the cell. Acts as an antioxidant.

Danio rerio (taxid: 7955)

>sp|Q58CY6|PGFS_BOVIN Prostamide/prostaglandin F synthase OS=Bos taurus GN=FAM213B PE=2 SV=1

 Score = 72.0 bits (175), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 46/160 (28%), Positives = 81/160 (50%), Gaps = 16/160 (10%)

Query: 226 LWRESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAV------LHEYIESEVK 279
           LW+E   V+  +RR GC++CR  A  L   K + D  G++L  V      L E+++    
Sbjct: 28  LWQEQACVVAGLRRFGCMVCRWIARDLSNLKGLLDQHGVRLVGVGPEALGLQEFLDG--- 84

Query: 280 DFWPRYWGGVVVYDQGMEFFKALGGGKLLKDKFLSGFLLNP-RAIANYKRARTLGVEQNF 338
                Y+ G +  D+  +F+K LG  +      L   L  P R +A   +A+ +G++ N 
Sbjct: 85  ----GYFAGELYLDESKQFYKELGFKRYNSLSILPAALGKPVREVA--AKAKAVGIQGNL 138

Query: 339 KGEGEIKGGLFIVGRGRSGIAYQFIERNFGDWAPLAEVIE 378
            G+    GGL +V +G   +   F++++ GD+APL  +++
Sbjct: 139 SGDLLQSGGLLVVAKGGDKVLLHFVQKSPGDYAPLESILQ 178

Catalyzes the reduction of prostaglandin-ethanolamide H(2) (prostamide H(2)) to prostamide F(2alpha) with NADPH as proton donor. Also able to reduce prostaglandin H(2) to prostaglandin F(2alpha).

Bos taurus (taxid: 9913)

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EC: 2

EC: 0

>sp|Q8TBF2|PGFS_HUMAN Prostamide/prostaglandin F synthase OS=Homo sapiens GN=FAM213B PE=2 SV=1

 Score = 70.5 bits (171), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 43/161 (26%), Positives = 80/161 (49%), Gaps = 16/161 (9%)

Query: 226 LWRESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAV------LHEYIESEVK 279
           LWRE   V+  +RR GC++CR  A  L +   + D  G++L  V      L E+++ +  
Sbjct: 28  LWREHACVVAGLRRFGCVVCRWIAQDLSSLAGLLDQHGVRLVGVGPEALGLQEFLDGD-- 85

Query: 280 DFWPRYWGGVVVYDQGMEFFKALGGGKLLKDKFLSGFLLNP-RAIANYKRARTLGVEQNF 338
                Y+ G +  D+  + +K LG  +      L   L  P R +A   +A+ +G++ N 
Sbjct: 86  -----YFAGELYLDESKQLYKELGFKRYNSLSILPAALGKPVRDVA--AKAKAVGIQGNL 138

Query: 339 KGEGEIKGGLFIVGRGRSGIAYQFIERNFGDWAPLAEVIEI 379
            G+    GGL +V +G   +   F++++ GD+ P   ++++
Sbjct: 139 SGDLLQSGGLLVVSKGGDKVLLHFVQKSPGDYVPKEHILQV 179

Catalyzes the reduction of prostaglandin-ethanolamide H(2) (prostamide H(2)) to prostamide F(2alpha) with NADPH as proton donor. Also able to reduce prostaglandin H(2) to prostaglandin F(2alpha).

Homo sapiens (taxid: 9606)

EC: 1

EC: .

EC: 1

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 0

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	399
224099269	415	predicted protein [Populus trichocarpa]	0.989	0.951	0.750	1e-178
255547021	444	conserved hypothetical protein [Ricinus	0.962	0.864	0.732	1e-174
225425013	417	PREDICTED: uncharacterized protein LOC10	0.989	0.947	0.706	1e-173
224111832	406	predicted protein [Populus trichocarpa]	0.967	0.950	0.731	1e-173
449435278	413	PREDICTED: uncharacterized protein LOC10	0.972	0.939	0.649	1e-158
357516841	409	hypothetical protein MTR_8g065720 [Medic	0.969	0.946	0.651	1e-154
356502668	410	PREDICTED: uncharacterized protein LOC10	0.979	0.953	0.658	1e-152
168052092	425	predicted protein [Physcomitrella patens	0.959	0.901	0.489	1e-108
168066271	537	predicted protein [Physcomitrella patens	0.959	0.713	0.451	1e-100
168019494	757	predicted protein [Physcomitrella patens	0.979	0.516	0.424	1e-97

>gi|224099269|ref|XP_002311420.1| predicted protein [Populus trichocarpa] gi|222851240|gb|EEE88787.1| predicted protein [Populus trichocarpa]

 Score =  630 bits (1626), Expect = e-178,   Method: Compositional matrix adjust.
 Identities = 313/417 (75%), Positives = 353/417 (84%), Gaps = 22/417 (5%)

Query: 1   MASYAMEDFVGNGVLKGQLPKLLEEGWDDVPTLK-----------------DALEIRSYL 43
           MAS+++EDFVGNGVLK  LP LL+EGWDDVPTLK                 DALEIRSYL
Sbjct: 1   MASFSVEDFVGNGVLKDLLPTLLKEGWDDVPTLKIMNKEDTDAMNMTQQQKDALEIRSYL 60

Query: 44  HDRALMQYADIFEASGKSLPELLNLSTGDLSSQFGMKRGHMARFKDRTSACSDPMPKS-D 102
           HDRAL+QY D  EASGK LPELL++ST DLSSQFGMKRGH+ARF DRTSAC+DP+ KS  
Sbjct: 61  HDRALLQYGDKLEASGKCLPELLSISTVDLSSQFGMKRGHIARFVDRTSACADPLLKSYA 120

Query: 103 TLTARNNSSIPSRNNSIYKSYTSIKSTKMQSVRSSLSRTGANKSLEQSLADFKIKDGYTF 162
            LTARN +SI SRNNS +KSY S+ S K+Q+  S       +K LEQSLADFKIKD + F
Sbjct: 121 PLTARNRNSIVSRNNSNFKSYASVNSRKIQASSS----MNHDKPLEQSLADFKIKDDHIF 176

Query: 163 KGIVAAGPAVPRVCGCIQAPPVNEKVAPYSAIENISIQKLTPEYKIGMERLVKTKTPPMK 222
           KGIVAAGPA PR CGC+Q PPV + VAPYSAIENIS+QKLTPEYKIGMERLVKTKTPPMK
Sbjct: 177 KGIVAAGPAEPRACGCVQPPPVVDSVAPYSAIENISVQKLTPEYKIGMERLVKTKTPPMK 236

Query: 223 ALELWRESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLHEYIESEVKDFW 282
           A ELWR+ PAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALGI+LFAVLHE+IESEVK+FW
Sbjct: 237 ASELWRDKPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALGIRLFAVLHEHIESEVKNFW 296

Query: 283 PRYWGGVVVYDQGMEFFKALGGGKLLKDKFLSGFLLNPRAIANYKRARTLGVEQNFKGEG 342
           PRYWGGVV++D+ M+FFKALGGG+LLKD F+SGF+ NPRAIANYKRA+  G EQNFKGEG
Sbjct: 297 PRYWGGVVLFDRSMKFFKALGGGQLLKDSFISGFIFNPRAIANYKRAKATGSEQNFKGEG 356

Query: 343 EIKGGLFIVGRGRSGIAYQFIERNFGDWAPLAEVIEICTQLQDQQRDQSETIKTSQE 399
           EIKGGLFIVGR +SGIAYQFIERNFGDWAPLAEVI+IC++LQ+QQ+ Q E+IKTSQ+
Sbjct: 357 EIKGGLFIVGREKSGIAYQFIERNFGDWAPLAEVIDICSKLQNQQQSQEESIKTSQQ 413

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255547021|ref|XP_002514568.1| conserved hypothetical protein [Ricinus communis] gi|223546172|gb|EEF47674.1| conserved hypothetical protein [Ricinus communis]

 Score =  615 bits (1587), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 295/403 (73%), Positives = 333/403 (82%), Gaps = 19/403 (4%)

Query: 1   MASYAMEDFVGNGVLKGQLPKLLEEGWDDVPTLK-----------------DALEIRSYL 43
           MAS+++E+FVGNG LK  LPKL+E+GWDDVPTLK                 DALEIRSYL
Sbjct: 1   MASFSIEEFVGNGALKKLLPKLVEDGWDDVPTLKIMNSEDMEAMNMTLRQKDALEIRSYL 60

Query: 44  HDRALMQYADIFEASGKSLPELLNLSTGDLSSQFGMKRGHMARFKDRTSACSDPMPKSDT 103
           HDRALMQY D  E SGKSLPELL+LS GDLSSQFGMKRGH+ARF DRT ACS+ +PKS  
Sbjct: 61  HDRALMQYGDKLEESGKSLPELLSLSNGDLSSQFGMKRGHVARFTDRTIACSEALPKSYA 120

Query: 104 LTARNNSSIPSRNNSIYKSYTSIKSTKMQSVRSSLSRTGAN--KSLEQSLADFKIKDGYT 161
           L  R  +S  S N S +KS+ SI S  MQS     S    N  K+LEQSLA+FKI DG+ 
Sbjct: 121 LPPRKMTSAASGNESTFKSFKSINSKYMQSTSKYPSNHSINYDKALEQSLAEFKINDGHI 180

Query: 162 FKGIVAAGPAVPRVCGCIQAPPVNEKVAPYSAIENISIQKLTPEYKIGMERLVKTKTPPM 221
           FKGIVAAGPA PR CGC+Q PPV ++VAPYS IENISI+KLTPEYK+GMERLVKT+ PPM
Sbjct: 181 FKGIVAAGPAEPRACGCVQPPPVVDEVAPYSFIENISIEKLTPEYKVGMERLVKTRAPPM 240

Query: 222 KALELWRESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLHEYIESEVKDF 281
           KA ELWR+ PAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALG+QL A+LHE+IESEV+DF
Sbjct: 241 KASELWRDKPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALGVQLIAILHEHIESEVQDF 300

Query: 282 WPRYWGGVVVYDQGMEFFKALGGGKLLKDKFLSGFLLNPRAIANYKRARTLGVEQNFKGE 341
           WPRYWGG+V+YD+ MEFFKALGGG+LLKDKF+SGFL NPRAIANYKRA+ L V+ NFKGE
Sbjct: 301 WPRYWGGIVLYDRDMEFFKALGGGQLLKDKFISGFLFNPRAIANYKRAKALRVKNNFKGE 360

Query: 342 GEIKGGLFIVGRGRSGIAYQFIERNFGDWAPLAEVIEICTQLQ 384
           GEIKGGLFIVGRG+SG+AYQFIERNFGDWAP+AEVIEICT+LQ
Sbjct: 361 GEIKGGLFIVGRGKSGVAYQFIERNFGDWAPVAEVIEICTKLQ 403

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225425013|ref|XP_002267536.1| PREDICTED: uncharacterized protein LOC100253093 [Vitis vinifera] gi|297738213|emb|CBI27414.3| unnamed protein product [Vitis vinifera]

 Score =  614 bits (1584), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 294/416 (70%), Positives = 339/416 (81%), Gaps = 21/416 (5%)

Query: 1   MASYAMEDFVGNGVLKGQLPKLLEEGWDDVPTLK-----------------DALEIRSYL 43
           MAS++MEDF+GNG LKG LPKL+EEGWDDVPTLK                  ALE+RSYL
Sbjct: 1   MASFSMEDFIGNGALKGLLPKLVEEGWDDVPTLKIMNSEDMDAINMTQQQKAALELRSYL 60

Query: 44  HDRALMQYADIFEASGKSLPELLNLSTGDLSSQFGMKRGHMARFKDRTSACSDPMPKSDT 103
           HDRALMQY D  E+SGK LPELLNLS  DLSSQFGMKRGH+ARF DR SAC+DP+P   T
Sbjct: 61  HDRALMQYGDKLESSGKFLPELLNLSITDLSSQFGMKRGHIARFTDRNSACADPLPAGYT 120

Query: 104 LTARNNSSIPSRNNSIYKS-YTSIKSTKMQSVRSSLSRTGA--NKSLEQSLADFKIKDGY 160
           L  +   S PSRNNSI KS  +S+ S K+ S+  + +R  +  ++SLEQ++++ KIKDG 
Sbjct: 121 LRTKRMMSTPSRNNSILKSELSSVNSRKILSISRAPTRANSIYDRSLEQAVSEIKIKDGL 180

Query: 161 TFKGIVAAGPAVPRVCGCIQAPPVNEKVAPYSAIENISIQKLTPEYKIGMERLVKTKTPP 220
             KGIVAA PA PR CGC+Q PP+ E V PYSAIEN+S+QKL PEYKIGMERLVKT TPP
Sbjct: 181 VIKGIVAAEPAEPRACGCVQPPPIVEDVCPYSAIENVSVQKLAPEYKIGMERLVKT-TPP 239

Query: 221 MKALELWRESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLHEYIESEVKD 280
           MKA ELWR+ PAVLLCIRRPGCIMCRAEAH+LYAKKPIFDALGIQLFA+LHE+IESEV+D
Sbjct: 240 MKASELWRDKPAVLLCIRRPGCIMCRAEAHKLYAKKPIFDALGIQLFAILHEHIESEVRD 299

Query: 281 FWPRYWGGVVVYDQGMEFFKALGGGKLLKDKFLSGFLLNPRAIANYKRARTLGVEQNFKG 340
           FWPRYWGGVV++D+ M FFKALGGGKLLKD+F++GF+ NPRAIANYKRA+  G+EQNFKG
Sbjct: 300 FWPRYWGGVVIFDRTMGFFKALGGGKLLKDRFITGFIFNPRAIANYKRAKATGIEQNFKG 359

Query: 341 EGEIKGGLFIVGRGRSGIAYQFIERNFGDWAPLAEVIEICTQLQDQQRDQSETIKT 396
           EGEIKGGLF+VG GRSGIAYQFIERNFGDWAPL EVIEICTQLQ+ Q  Q E++ T
Sbjct: 360 EGEIKGGLFLVGSGRSGIAYQFIERNFGDWAPLPEVIEICTQLQNPQEAQGESMST 415

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224111832|ref|XP_002315994.1| predicted protein [Populus trichocarpa] gi|222865034|gb|EEF02165.1| predicted protein [Populus trichocarpa]

 Score =  613 bits (1581), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 305/417 (73%), Positives = 346/417 (82%), Gaps = 31/417 (7%)

Query: 1   MASYAMEDFVGNGVLKGQLPKLLEEGWDDVPTLK-----------------DALEIRSYL 43
           MAS+++EDFVGNGVLK  LP LLEEGWDD+PTLK                 DALEIRSYL
Sbjct: 1   MASFSVEDFVGNGVLKDLLPTLLEEGWDDIPTLKIMNSEDTDAMNMTRQQKDALEIRSYL 60

Query: 44  HDRALMQYADIFEASGKSLPELLNLSTGDLSSQFGMKRGHMARFKDRTSACSDPMPKSDT 103
           HDRAL+QY D  EASGK LPELL+LSTGDLSS FGMKRGH+ARF DRT AC DP+ KS  
Sbjct: 61  HDRALLQYGDKLEASGKCLPELLSLSTGDLSSHFGMKRGHIARFMDRTGACEDPLLKSYA 120

Query: 104 -LTARNNSSIPSRNNSIYKSYTSIKSTKMQSVRSSLSRTGANKSLEQSLADFKIKDGYTF 162
            LTAR  +S  SRNNS +KSY+S+ S KMQ++ S       +KSLEQSLADFKIKDGY F
Sbjct: 121 PLTARKMNSTVSRNNSNFKSYSSVSSKKMQTISS----MNYDKSLEQSLADFKIKDGYIF 176

Query: 163 KGIVAAGPAVPRVCGCIQAPPVNEKVAPYSAIENISIQKLTPEYKIGMERLVKTKTPPMK 222
           KGIVAAGPA  R CGC+Q PPV + VAPYS+IENIS+QKLTPEYKIGME LVKTKTPPMK
Sbjct: 177 KGIVAAGPAELRACGCVQPPPVVDSVAPYSSIENISVQKLTPEYKIGMEHLVKTKTPPMK 236

Query: 223 ALELWRESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLHEYIESEVKDFW 282
           A+ELWR+ PAV+LCIRRPGCIMCRAEAHQLYAKKPIFDALGI+LFAVLHE+IESEVKDFW
Sbjct: 237 AVELWRDKPAVILCIRRPGCIMCRAEAHQLYAKKPIFDALGIRLFAVLHEHIESEVKDFW 296

Query: 283 PRYWGGVVVYDQGMEFFKALGGGKLLKDKFLSGFLLNPRAIANYKRARTLGVEQNFKGEG 342
           PRYWGGVV++D+ MEFFKALGGG+LL+DKF+SGF+ NPRAIANYKRA+ +G++QNFKGEG
Sbjct: 297 PRYWGGVVLFDRSMEFFKALGGGQLLRDKFISGFIFNPRAIANYKRAKAMGIDQNFKGEG 356

Query: 343 EIKGGLFIVGRGRSGIAYQFIERNFGDWAPLAEVIEICTQLQDQQRDQSETIKTSQE 399
           EIKGGLFIVGR +SGIAYQFIERNFGDWAP+AE         +QQ+ Q E+IKTSQ+
Sbjct: 357 EIKGGLFIVGRDKSGIAYQFIERNFGDWAPVAE---------NQQQSQEESIKTSQQ 404

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449435278|ref|XP_004135422.1| PREDICTED: uncharacterized protein LOC101217484 [Cucumis sativus] gi|449493522|ref|XP_004159330.1| PREDICTED: uncharacterized protein LOC101230345 [Cucumis sativus]

 Score =  565 bits (1455), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 270/416 (64%), Positives = 325/416 (78%), Gaps = 28/416 (6%)

Query: 1   MASYAMEDFVGNGVLKGQLPKLLEEGWDDVPTLK-----------------DALEIRSYL 43
           M S+++EDFVGNGVLK  LP LL+EGWDDVPTLK                 +A+EIR+YL
Sbjct: 1   MGSFSVEDFVGNGVLKDLLPTLLDEGWDDVPTLKVMNSEDMDAINMTRQQKEAIEIRTYL 60

Query: 44  HDRALMQYADIFEASGKSLPELLNLSTGDLSSQFGMKRGHMARFKDRTSACSDPMPKSDT 103
           HDR+LM YAD  E++GK LPELL++S  DL+SQF MKRGH+ARF DR S+C DP      
Sbjct: 61  HDRSLMPYADRLESTGKCLPELLSISVEDLTSQFHMKRGHIARFHDRKSSCVDP------ 114

Query: 104 LTARNNSSIPSRNNSIYKSYTSIKSTKMQSVRSSLSRTGANKSLEQSLADFKIKDGYTFK 163
             + N    P  + SI ++Y S  S +MQS+RS   R   +K++EQ++++FKI+DGY FK
Sbjct: 115 --STNKFDAPLASTSIKRTYQSNSSKRMQSMRS---RNFQDKTVEQAMSEFKIEDGYEFK 169

Query: 164 GIVAAGPAVPRVCGCIQAPPVNEKVAPYSAIENISIQKLTPEYKIGMERLVKTKTPPMKA 223
           GIVA   A    CGC+Q P + +K+APYSAIENISIQKLTPEYKIGMERLVKTKTPPMKA
Sbjct: 170 GIVATELAGHIACGCVQPPHIVDKIAPYSAIENISIQKLTPEYKIGMERLVKTKTPPMKA 229

Query: 224 LELWRESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLHEYIESEVKDFWP 283
             LW++ PA++LCIRRPGCIMCRAEAHQLYA+K IFDALG QLFAV+HE+IESEVKDFWP
Sbjct: 230 SSLWQDKPAIILCIRRPGCIMCRAEAHQLYARKAIFDALGYQLFAVIHEHIESEVKDFWP 289

Query: 284 RYWGGVVVYDQGMEFFKALGGGKLLKDKFLSGFLLNPRAIANYKRARTLGVEQNFKGEGE 343
           RYWGG V++DQG  FFKALGGGKL+K+KFL GFL NPRAIANYKRA+ +G++QNF GEGE
Sbjct: 290 RYWGGTVIFDQGRGFFKALGGGKLMKEKFLFGFLFNPRAIANYKRAKAMGIKQNFNGEGE 349

Query: 344 IKGGLFIVGRGRSGIAYQFIERNFGDWAPLAEVIEICTQLQDQQRDQSETIKTSQE 399
           IKGGLFI+G  + GIAYQFIERNFGDWAPL+EVIEICT++Q Q +    +IK SQE
Sbjct: 350 IKGGLFILGSSKRGIAYQFIERNFGDWAPLSEVIEICTKIQSQSQASGLSIKPSQE 405

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357516841|ref|XP_003628709.1| hypothetical protein MTR_8g065720 [Medicago truncatula] gi|355522731|gb|AET03185.1| hypothetical protein MTR_8g065720 [Medicago truncatula]

 Score =  552 bits (1422), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 266/408 (65%), Positives = 320/408 (78%), Gaps = 21/408 (5%)

Query: 1   MASYAMEDFVGNGVLKGQLPKLLEEGWDDVPTLK-----------------DALEIRSYL 43
           M+S+++E+F+GNGVLK  LPKLL+EGWDDVPT+K                 D++ IR+YL
Sbjct: 1   MSSFSIEEFIGNGVLKELLPKLLDEGWDDVPTMKVMDSDDMNSIKMTQRQKDSIGIRAYL 60

Query: 44  HDRALMQYADIFEASGKSLPELLNLSTGDLSSQFGMKRGHMARFKDRTSACSDPMPKSDT 103
           HDR LMQYAD  EASGK+L EL++LS+ DLS+QF MKRGH+ RF DRT    D   K   
Sbjct: 61  HDRGLMQYADKLEASGKNLSELMSLSSMDLSTQFDMKRGHIVRFIDRTI---DESFKLRG 117

Query: 104 LTARNNSSIPSRNNSIYKSYTSIKSTKMQSVRSSLSRTGANKSLEQSLADFKIKDGYTFK 163
           + AR  SS+  R+ SI     S  S  M  ++   S T +++S EQSL + KIKDGY FK
Sbjct: 118 IMARRRSSLMYRHESIPNRLASNGSNSMMRMQMR-SNTISDRSFEQSLTELKIKDGYVFK 176

Query: 164 GIVAAGPAVPRVCGCIQAPPVNEKVAPYSAIENISIQKLTPEYKIGMERLVKTKTPPMKA 223
           GIVA+ PA PR CGC+Q PPV+++VAPY AIENIS+QK+TPEYKIGME LVK KTPPMKA
Sbjct: 177 GIVASEPADPRACGCVQPPPVSDQVAPYVAIENISVQKITPEYKIGMEPLVKMKTPPMKA 236

Query: 224 LELWRESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLHEYIESEVKDFWP 283
            ELWR+ PAV LC+RRPGCIMCRAEAH+L+++KPIFDALG+QLF V+HE+IESE+KDFWP
Sbjct: 237 AELWRDKPAVFLCLRRPGCIMCRAEAHKLFSRKPIFDALGVQLFVVVHEHIESEIKDFWP 296

Query: 284 RYWGGVVVYDQGMEFFKALGGGKLLKDKFLSGFLLNPRAIANYKRARTLGVEQNFKGEGE 343
           RYWGG V+ D+G +FFKALGGGKLLK+ F SGFLLNPRAI NYKRA+  G ++NF+GEGE
Sbjct: 297 RYWGGGVLLDRGRDFFKALGGGKLLKENFFSGFLLNPRAICNYKRAKATGFQKNFRGEGE 356

Query: 344 IKGGLFIVGRGRSGIAYQFIERNFGDWAPLAEVIEICTQLQDQQRDQS 391
           IKGGLFIVG GR+GIAYQFIE NFGDWAP+AEVIEICTQLQ QQ+D S
Sbjct: 357 IKGGLFIVGSGRTGIAYQFIEMNFGDWAPIAEVIEICTQLQKQQQDLS 404

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356502668|ref|XP_003520139.1| PREDICTED: uncharacterized protein LOC100782205 [Glycine max]

 Score =  545 bits (1404), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 272/413 (65%), Positives = 325/413 (78%), Gaps = 22/413 (5%)

Query: 1   MASYAMEDFVGNGVLKGQLPKLLEEGWDDVPTLK-----------------DALEIRSYL 43
           MAS+++E+F+GNG+LK  L KLLEEGWDDVPTLK                 DAL IRSYL
Sbjct: 1   MASFSVEEFIGNGILKELLQKLLEEGWDDVPTLKIMSSEDMDLLQMTQEQKDALGIRSYL 60

Query: 44  HDRALMQYADIFEASGKSLPELLNLSTGDLSSQFGMKRGHMARFKDRTSACSDPMPKSDT 103
           HDR LMQYAD  E  GK+L EL+NLST DLS+QF MKRGH+ARF +RT+  SD   K   
Sbjct: 61  HDRGLMQYADKMEDCGKALSELINLSTTDLSTQFEMKRGHIARFINRTT--SDDSVKLRA 118

Query: 104 LTARNNSSIPSRNNSIYKSYTSIKSTKMQSVRSSLSRTGANKSLEQSLADFKIKDGYTFK 163
           L AR  SS   R++SI KS  S  S  +   RS +    A+ +LEQS+AD KIK+GY FK
Sbjct: 119 LAARRRSSTMHRDDSIPKSVGSNSSNSL--TRSHIRSNAASDALEQSMADMKIKEGYVFK 176

Query: 164 GIVAAGPAVPRVCGCIQAPP-VNEKVAPYSAIENISIQKLTPEYKIGMERLVKTKTPPMK 222
           GIVAA PA PR CGC+  PP ++++VAPY  +ENIS+QKLTPEYKIGME LVKTK PP+K
Sbjct: 177 GIVAAEPAEPRACGCVNPPPPISDQVAPYGTVENISVQKLTPEYKIGMEPLVKTKAPPLK 236

Query: 223 ALELWRESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLHEYIESEVKDFW 282
             ELWR+ PAV LC+RRPGCIMCRAEAHQLY++K IFDALG+QLFAVLHE I+SEVKDFW
Sbjct: 237 VSELWRDKPAVFLCLRRPGCIMCRAEAHQLYSRKAIFDALGVQLFAVLHEQIDSEVKDFW 296

Query: 283 PRYWGGVVVYDQGMEFFKALGGGKLLKDKFLSGFLLNPRAIANYKRARTLGVEQNFKGEG 342
           PRYWGGVV+ D+G +FFKALGGGKLLK+KFLSGFLLNPR+++NYKRA+ + ++ NFKGEG
Sbjct: 297 PRYWGGVVLLDRGRDFFKALGGGKLLKEKFLSGFLLNPRSLSNYKRAKAMHIDYNFKGEG 356

Query: 343 EIKGGLFIVGRGRSGIAYQFIERNFGDWAPLAEVIEICTQLQDQQRDQSETIK 395
           EIKGGLFI+G G+SGIAYQFIERNFGDWAP+AEVIEICTQ+Q+QQ  Q  +++
Sbjct: 357 EIKGGLFIIGMGKSGIAYQFIERNFGDWAPIAEVIEICTQMQNQQEGQRMSVQ 409

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|168052092|ref|XP_001778485.1| predicted protein [Physcomitrella patens subsp. patens] gi|162670083|gb|EDQ56658.1| predicted protein [Physcomitrella patens subsp. patens]

 Score =  398 bits (1022), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 204/417 (48%), Positives = 272/417 (65%), Gaps = 34/417 (8%)

Query: 1   MASYAMEDFVGNGVLKGQLPKLLEEGWDDVPTLK-----------------DALEIRSYL 43
           M+S+A+EDFVGNGVL+ Q+  L+ +GWDDVPTLK                 DALE+R+YL
Sbjct: 1   MSSFALEDFVGNGVLRDQMESLMADGWDDVPTLKVMSREDMDLLQLSQMQRDALELRTYL 60

Query: 44  HDRALMQYADIFEASGKSLPELLNLSTGDLSSQFGMKRGHMARFKDRTSACSDPMPKSDT 103
           HD+ LM+YAD  EASGK+L ELL  S  +LSS++ MKRGH+ARF DR SAC   +P    
Sbjct: 61  HDKLLMEYADTLEASGKNLQELLKSSPSELSSEYKMKRGHVARFLDRGSACGIQVPNDLV 120

Query: 104 LTARNNSSIPSRNNSIYK----SYTSIKSTKMQSVRSSLSRTGANKSLEQS-------LA 152
           + AR  ++      S+      S +  +  + +S  +S + + A+   EQ        + 
Sbjct: 121 IPARKATAAHHGGASLSPPRSMSVSPPRQRRSESSNASYADSRASPPEEQPEHKPPVIVR 180

Query: 153 DFKIKDGYTFKGIVAAGPAVPRVCGCIQAPPVNEKVAPYSAIENISIQKLTPEYKIGMER 212
               +       I +A    PR+CG ++   + E+V P SA+ENI IQKL P++  G+  
Sbjct: 181 PMTSQAPPASHAIFSAPKVEPRLCGLVKLGVMKEEVTPLSALENIMIQKLAPQHSKGVNP 240

Query: 213 LVKTKTP-----PMKALELWRESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLF 267
             K K P     P KA +LW E P ++LC+RRPGC+MCRAEAHQLYA+KPIFDA+GIQL 
Sbjct: 241 F-KGKEPIQLAAPFKASQLWAEKPTLILCLRRPGCVMCRAEAHQLYARKPIFDAMGIQLV 299

Query: 268 AVLHEYIESEVKDFWPRYWGGVVVYDQGMEFFKALGGGKLLKDKFLSGFLLNPRAIANYK 327
            VL+E+I++EV+ FWPRYWGG+VV D   +FFKALG G+L K+ F++GFLLN  A ANYK
Sbjct: 300 VVLNEHIDAEVRQFWPRYWGGMVVADTHRDFFKALGQGELPKEGFVTGFLLNSIAKANYK 359

Query: 328 RARTLGVEQNFKGEGEIKGGLFIVGRGRSGIAYQFIERNFGDWAPLAEVIEICTQLQ 384
           RA+  GVE N+ GEG IKGGLFI+  G  G+AYQF+ERNFGDWAP+ EV+E+C  +Q
Sbjct: 360 RAKATGVEGNYAGEGTIKGGLFIMRPGNGGVAYQFVERNFGDWAPIEEVLEVCGNIQ 416

Source: Physcomitrella patens subsp. patens

Species: Physcomitrella patens

Genus: Physcomitrella

Family: Funariaceae

Order: Funariales

Class: Bryopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|168066271|ref|XP_001785064.1| predicted protein [Physcomitrella patens subsp. patens] gi|162663357|gb|EDQ50125.1| predicted protein [Physcomitrella patens subsp. patens]

 Score =  372 bits (954), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 193/427 (45%), Positives = 269/427 (62%), Gaps = 44/427 (10%)

Query: 1   MASYAMEDFVGNGVLKGQLPKLLEEGWDDVPTLK-----------------DALEIRSYL 43
           M+S+A+EDFVG+GVL+ Q+  L+ +GWDDVPTLK                 DALE+R+YL
Sbjct: 1   MSSFALEDFVGDGVLRDQIESLMADGWDDVPTLKVMSKEDMNTLQLSQLQRDALELRTYL 60

Query: 44  HDRALMQYADIFEASGKSLPELLNLSTGDLSSQFGMKRGHMARFKDRTSACSDPMPKSDT 103
           HDR LM+YAD  EASGK+L ELL     +L+ ++ MKRGH+ARF D+ S  +  +P    
Sbjct: 61  HDRLLMEYADTLEASGKNLQELLIAKPSELTKEYKMKRGHVARFLDKKSNSTIQLPTDLV 120

Query: 104 LTARNNSSI----------------PSRNNSIYKSYTSIKSTKMQSVR--SSLSRTGANK 145
           L AR  ++                 P R      S TS  ST   S    +  +   AN 
Sbjct: 121 LPARKITAARHGGAPISLPRTLTMSPPRQRRSEHSNTSTDSTDGGSTSPANGFTMRYANV 180

Query: 146 SLEQS---LADFKIKDGYTFKGIVAAGPAVPRVCGCIQAPPVNEKVAPYSAIENISIQKL 202
           +  ++   +A    +     KGI +A  A  R+CG ++   + ++V P S +E I +QKL
Sbjct: 181 AEYEAPVIMAPMSAQPPVITKGIFSAPEAETRLCGLVKLGGMKQEVTPLSTLEKILVQKL 240

Query: 203 TPEYKIGMERLVKTKTP-----PMKALELWRESPAVLLCIRRPGCIMCRAEAHQLYAKKP 257
            P+++ G+    + K P     P KA ELW + P ++LC+RRPGC+MCRAEAHQLY++KP
Sbjct: 241 APQHRKGVNPF-RGKGPIQLSSPFKASELWADKPTLILCLRRPGCVMCRAEAHQLYSRKP 299

Query: 258 IFDALGIQLFAVLHEYIESEVKDFWPRYWGGVVVYDQGMEFFKALGGGKLLKDKFLSGFL 317
           IFDA+G+QL  VLHE+I++EV+ FWPRYWGGVVV D+  +FFKALG G+L K+  ++G L
Sbjct: 300 IFDAMGVQLVLVLHEHIDAEVRAFWPRYWGGVVVVDEKRDFFKALGQGELPKEGIVTGLL 359

Query: 318 LNPRAIANYKRARTLGVEQNFKGEGEIKGGLFIVGRGRSGIAYQFIERNFGDWAPLAEVI 377
           LN  A AN +RA+  G++ N+ GEG IKGG++I+  G  G+AYQFIERNFGDWAPL EV+
Sbjct: 360 LNGAARANLRRAKAAGLDGNYIGEGTIKGGMYIMRPGDRGVAYQFIERNFGDWAPLEEVL 419

Query: 378 EICTQLQ 384
           ++C+ +Q
Sbjct: 420 QVCSHIQ 426

Source: Physcomitrella patens subsp. patens

Species: Physcomitrella patens

Genus: Physcomitrella

Family: Funariaceae

Order: Funariales

Class: Bryopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|168019494|ref|XP_001762279.1| predicted protein [Physcomitrella patens subsp. patens] gi|162686357|gb|EDQ72746.1| predicted protein [Physcomitrella patens subsp. patens]

 Score =  363 bits (931), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 198/466 (42%), Positives = 270/466 (57%), Gaps = 75/466 (16%)

Query: 1   MASYAMEDFVGNGVLKGQLPKLLEEGWDDVPTLK-----------------DALEIRSYL 43
           M+S+A+E+FVGNGVL+ Q+   + +GW DVPTLK                 DALEIRS+L
Sbjct: 178 MSSFALEEFVGNGVLRDQMDSFIADGWADVPTLKFMSKEDMDTLQLSQMQRDALEIRSHL 237

Query: 44  HDRALMQYADIFEASGKSLPELLNLSTGDLSSQFGMKRGHMARFKDRTSACSDPMPKSDT 103
           HDR LM+YAD  EASGK+L ELL+ S   L+  + M+RGH+ARF +   AC+  +P + T
Sbjct: 238 HDRMLMRYADTLEASGKTLSELLSTSPTQLTIDYKMRRGHVARFLEMGGACAVKLPNNLT 297

Query: 104 LTA-------RNNSSI------------------------PSRNNSIYKSYT-----SIK 127
           L A       R N+ I                        P   N +   +      S++
Sbjct: 298 LPARKFTAVHRGNAGIRVDNDNGFDNVDEPLLPVAAGDQKPRFTNDVKSKFEVSPQPSMQ 357

Query: 128 STKMQSVRSS--------LSRTGANKSLEQSLADFKIKDGYT-------FKGIVAAGPAV 172
             ++ S  S+        L R+    S     +   +K  ++        +GI +A    
Sbjct: 358 KNELNSFSSNHEVNILWILMRSIGRGSCVVLKSPVVLKGPFSGQAPSSNSRGIFSAPEVP 417

Query: 173 PRVCGCIQAPPVNEKVAPYSAIENISIQKLTPEYKIGMERLVKTKT-----PPMKALELW 227
           PR+CG ++   V E++ P S +E I +QK+TP Y  G        +      P+KA ELW
Sbjct: 418 PRLCGILRDKGVKEEMTPLSVLEKIMVQKVTPVYTKGANPFKNKGSLNPLPAPVKASELW 477

Query: 228 RESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLHEYIESEVKDFWPRYWG 287
            E P ++LC+RRPGC+MCRAEAHQLY +KPIFDA+GIQL  +L+EY++SEVK FWPRYWG
Sbjct: 478 AEKPTIILCLRRPGCVMCRAEAHQLYTRKPIFDAMGIQLVVLLNEYVDSEVKAFWPRYWG 537

Query: 288 GVVVYDQGMEFFKALGGGKLLKDKFLSGFLLNPRAIANYKRARTLGVEQNFKGEGEIKGG 347
           GVVV D   +FFKALG GK+ ++ +L+GF LNP A++N+KRA     + N +GEG IKGG
Sbjct: 538 GVVVADSNRDFFKALGQGKMPRENYLTGFFLNPTALSNFKRATATNFDWNVRGEGNIKGG 597

Query: 348 LFIVGRGRSGIAYQFIERNFGDWAPLAEVIEICTQLQDQQRDQSET 393
           ++I+  G  GIAYQF+ERNFGDWAPL EV+E C  +   QR  SE 
Sbjct: 598 MYILRAGSGGIAYQFVERNFGDWAPLDEVMEACEII--MQRGGSEV 641

Source: Physcomitrella patens subsp. patens

Species: Physcomitrella patens

Genus: Physcomitrella

Family: Funariaceae

Order: Funariales

Class: Bryopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	399
UNIPROTKB|E2R0A0	216	FAM213A "Uncharacterized prote	0.451	0.833	0.361	2.6e-24
UNIPROTKB|Q9BRX8	229	FAM213A "Redox-regulatory prot	0.451	0.786	0.351	1.8e-23
RGD|1309676	229	Fam213a "family with sequence	0.451	0.786	0.345	1.8e-23
UNIPROTKB|Q3ZBK2	218	FAM213A "Redox-regulatory prot	0.448	0.821	0.343	1.6e-22
UNIPROTKB|F1SEQ7	229	FAM213A "Uncharacterized prote	0.446	0.777	0.333	1.6e-22
MGI|MGI:1917814	218	Fam213a "family with sequence	0.451	0.825	0.335	1.1e-21
UNIPROTKB|Q5ZI34	224	FAM213A "Redox-regulatory prot	0.451	0.803	0.313	4.3e-20
UNIPROTKB|F1NKG0	226	FAM213A "Redox-regulatory prot	0.448	0.792	0.308	3.7e-19
ZFIN|ZDB-GENE-030131-2459	229	fam213aa "family with sequence	0.378	0.659	0.329	1.9e-18
UNIPROTKB|Q58CY6	201	FAM213B "Prostamide/prostaglan	0.373	0.741	0.258	1e-10

UNIPROTKB|E2R0A0 FAM213A "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 278 (102.9 bits), Expect = 2.6e-24, P = 2.6e-24
 Identities = 68/188 (36%), Positives = 96/188 (51%)

Query:   200 QKLTPEYKIGMERLVKTKTP-PMKALELWRESPAVLLCIRRPGCIMCRAEAHQLYAKKPI 258
             QK T EY   ++     K P   KA ELW ++ AV++ +RRPGC +CR EA  L + KP 
Sbjct:    29 QKATLEYLEDIDLKTLEKEPRTFKAKELWEKNGAVIMAVRRPGCFLCREEAADLSSLKPK 88

Query:   259 FDALGIQLFAVLHEYIESEVKDFWPRYWGGVVVYDQGMEXXXXXXXXXXXXXXXXXXXXX 318
              D LG+ L+AV+ E I +EV+DF P Y+ G +  D+  +                     
Sbjct:    89 LDELGVPLYAVVKEQIRTEVQDFQP-YFKGEIFLDEKKKFYGPQRRKMMFMGFVRLGVWY 147

Query:   319 NPRAIANYKRARTLGVEQNFKGEGEIKGGLFIVGRGRSGIAYQFIERNFGDWAPLAEVIE 378
             N      + RAR  G   N +GEG I GG+F+VG G+ GI  +  E+ FGD      V+E
Sbjct:   148 N------FFRARNGGFSGNLEGEGFILGGVFVVGPGKQGILLEHREKEFGDKVNPVSVLE 201

Query:   379 ICTQLQDQ 386
                ++Q Q
Sbjct:   202 AARKIQTQ 209

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0045670 "regulation of osteoclast differentiation" evidence=IEA

GO:0016209 "antioxidant activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

UNIPROTKB|Q9BRX8 FAM213A "Redox-regulatory protein FAM213A" [Homo sapiens (taxid:9606)]

 Score = 270 (100.1 bits), Expect = 1.8e-23, P = 1.8e-23
 Identities = 66/188 (35%), Positives = 95/188 (50%)

Query:   200 QKLTPEYKIGMERLVKTKTP-PMKALELWRESPAVLLCIRRPGCIMCRAEAHQLYAKKPI 258
             QK   EY   ++     K P   KA ELW ++ AV++ +RRPGC +CR EA  L + K +
Sbjct:    42 QKAALEYLEDIDLKTLEKEPRTFKAKELWEKNGAVIMAVRRPGCFLCREEAADLSSLKSM 101

Query:   259 FDALGIQLFAVLHEYIESEVKDFWPRYWGGVVVYDQGMEXXXXXXXXXXXXXXXXXXXXX 318
              D LG+ L+AV+ E+I +EVKDF P Y+ G +  D+  +                     
Sbjct:   102 LDQLGVPLYAVVKEHIRTEVKDFQP-YFKGEIFLDEKKKFYGPQRRKMMFMGFIRLGVWY 160

Query:   319 NPRAIANYKRARTLGVEQNFKGEGEIKGGLFIVGRGRSGIAYQFIERNFGDWAPLAEVIE 378
             N      + RA   G   N +GEG I GG+F+VG G+ GI  +  E+ FGD   L  V+E
Sbjct:   161 N------FFRAWNGGFSGNLEGEGFILGGVFVVGSGKQGILLEHREKEFGDKVNLLSVLE 214

Query:   379 ICTQLQDQ 386
                 ++ Q
Sbjct:   215 AAKMIKPQ 222

GO:0005739 "mitochondrion" evidence=IEA

GO:0005737 "cytoplasm" evidence=IDA

GO:0016209 "antioxidant activity" evidence=IDA

GO:0045670 "regulation of osteoclast differentiation" evidence=IDA

GO:0055114 "oxidation-reduction process" evidence=IDA

RGD|1309676 Fam213a "family with sequence similarity 213, member A" [Rattus norvegicus (taxid:10116)]

 Score = 270 (100.1 bits), Expect = 1.8e-23, P = 1.8e-23
 Identities = 65/188 (34%), Positives = 98/188 (52%)

Query:   200 QKLTPEYKIGMERLVKTKTP-PMKALELWRESPAVLLCIRRPGCIMCRAEAHQLYAKKPI 258
             QK   EY   ++     K P   KA ELW ++ AV++ +RRPGC +CRAEA  L + KP 
Sbjct:    42 QKAALEYLEDIDLKTLEKEPRTFKAKELWEKNGAVIMAVRRPGCFLCRAEAADLMSLKPK 101

Query:   259 FDALGIQLFAVLHEYIESEVKDFWPRYWGGVVVYDQGMEXXXXXXXXXXXXXXXXXXXXX 318
              D LG+ L+AV+ E ++ EV+DF P Y+ G +  D+  +                     
Sbjct:   102 LDELGVPLYAVVKEKVKREVEDFQP-YFKGEIFLDEKKKFYGPERRKMMLMGLVRLGVWY 160

Query:   319 NPRAIANYKRARTLGVEQNFKGEGEIKGGLFIVGRGRSGIAYQFIERNFGDWAPLAEVIE 378
             N     ++ RA   G   NF+GEG I GG+F++G G+ G+  +  E+ FGD   L  V+E
Sbjct:   161 N-----SF-RAWKGGFSGNFEGEGFILGGVFVIGSGKQGVLLEHREKEFGDRVNLLSVLE 214

Query:   379 ICTQLQDQ 386
                +++ Q
Sbjct:   215 AVKKIKPQ 222

GO:0005737 "cytoplasm" evidence=ISO

GO:0005739 "mitochondrion" evidence=IEA;ISO

GO:0016209 "antioxidant activity" evidence=IEA;ISO

GO:0045670 "regulation of osteoclast differentiation" evidence=IEA;ISO

GO:0055114 "oxidation-reduction process" evidence=IEA;ISO

UNIPROTKB|Q3ZBK2 FAM213A "Redox-regulatory protein FAM213A" [Bos taurus (taxid:9913)]

 Score = 261 (96.9 bits), Expect = 1.6e-22, P = 1.6e-22
 Identities = 65/189 (34%), Positives = 96/189 (50%)

Query:   200 QKLTPEY--KIGMERLVKTKTPPMKALELWRESPAVLLCIRRPGCIMCRAEAHQLYAKKP 257
             +K   EY   I ++ L K      KA  LW ++ AV++ +RRPGC +CR EA  L + KP
Sbjct:    31 EKAALEYLEDIDLKTLEKDAVT-FKAKALWEKNGAVIMAVRRPGCFLCREEATDLSSLKP 89

Query:   258 IFDALGIQLFAVLHEYIESEVKDFWPRYWGGVVVYDQGMEXXXXXXXXXXXXXXXXXXXX 317
               D LG+ L+AV+ E+I++EVKDF P Y+ G +  D+  +                    
Sbjct:    90 KLDELGVPLYAVVKEHIKNEVKDFQP-YFKGEIFLDENKKFYGPQRRKMMFMGFVRLGVW 148

Query:   318 XNPRAIANYKRARTLGVEQNFKGEGEIKGGLFIVGRGRSGIAYQFIERNFGDWAPLAEVI 377
              N      + RA   G   N  GEG I GG+F++G G+ GI  +  E+ FGD   L  V+
Sbjct:   149 QN------FFRAWNGGFSGNLDGEGFILGGVFVMGPGKQGILLEHREKEFGDKVNLTSVL 202

Query:   378 EICTQLQDQ 386
             E   +++ Q
Sbjct:   203 EAARKIRPQ 211

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0045670 "regulation of osteoclast differentiation" evidence=IEA

GO:0016209 "antioxidant activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

UNIPROTKB|F1SEQ7 FAM213A "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 261 (96.9 bits), Expect = 1.6e-22, P = 1.6e-22
 Identities = 62/186 (33%), Positives = 96/186 (51%)

Query:   200 QKLTPEYKIGMERLVKTKTPP-MKALELWRESPAVLLCIRRPGCIMCRAEAHQLYAKKPI 258
             Q+ T +Y   ++     K P   KA  LW ++ AV++ +RRPGC +CR EA  L + KP 
Sbjct:    42 QRATLDYLEDIDLKTLEKEPKTFKAKALWEKTGAVIMAVRRPGCFLCREEAADLSSLKPR 101

Query:   259 FDALGIQLFAVLHEYIESEVKDFWPRYWGGVVVYDQGMEXXXXXXXXXXXXXXXXXXXXX 318
              D LG+ L+AV+ E +++EVKDF P Y+ G +  D+  +                     
Sbjct:   102 LDELGVPLYAVVKEQVKNEVKDFQP-YFKGEIFLDEEKKFYGPQRRKMMFMGFVRLGVWY 160

Query:   319 NPRAIANYKRARTLGVEQNFKGEGEIKGGLFIVGRGRSGIAYQFIERNFGDWAPLAEVIE 378
             N      + RAR+ G   N +GEG + GG+F+VG G+ GI  +  E+ FGD      V+E
Sbjct:   161 N------FFRARSGGFSGNLEGEGFVLGGVFVVGPGKQGILLEHREKEFGDKVNPVSVLE 214

Query:   379 ICTQLQ 384
                +++
Sbjct:   215 AVRKIK 220

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0045670 "regulation of osteoclast differentiation" evidence=IEA

GO:0016209 "antioxidant activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

MGI|MGI:1917814 Fam213a "family with sequence similarity 213, member A" [Mus musculus (taxid:10090)]

 Score = 253 (94.1 bits), Expect = 1.1e-21, P = 1.1e-21
 Identities = 63/188 (33%), Positives = 96/188 (51%)

Query:   200 QKLTPEYKIGMERLVKTKTP-PMKALELWRESPAVLLCIRRPGCIMCRAEAHQLYAKKPI 258
             +K   EY   ++     K P   KA ELW ++ AV++ +RRPGC +CRAEA  L + KP 
Sbjct:    31 RKAALEYLEDIDLKTLEKEPRTFKAKELWEKNGAVIMAVRRPGCFLCRAEAADLMSLKPK 90

Query:   259 FDALGIQLFAVLHEYIESEVKDFWPRYWGGVVVYDQGMEXXXXXXXXXXXXXXXXXXXXX 318
              D LG+ L+AV+ E ++ EV+DF P Y+ G +  D+  +                     
Sbjct:    91 LDELGVPLYAVVKEQVKREVEDFQP-YFKGEIFLDEKKKFYGPERRKMMFMGLIRLGVWY 149

Query:   319 NPRAIANYKRARTLGVEQNFKGEGEIKGGLFIVGRGRSGIAYQFIERNFGDWAPLAEVIE 378
             N     ++ RA   G   N +GEG I GG+F++G G+ GI  +  E+ FGD      V+E
Sbjct:   150 N-----SF-RAWNGGFSGNLEGEGFILGGVFVIGSGKQGILLEHREKEFGDRVNPLSVLE 203

Query:   379 ICTQLQDQ 386
                +++ Q
Sbjct:   204 AVKKIKLQ 211

GO:0005737 "cytoplasm" evidence=ISO

GO:0005739 "mitochondrion" evidence=IDA

GO:0016209 "antioxidant activity" evidence=ISO

GO:0045670 "regulation of osteoclast differentiation" evidence=ISO

GO:0055114 "oxidation-reduction process" evidence=ISO

UNIPROTKB|Q5ZI34 FAM213A "Redox-regulatory protein FAM213A" [Gallus gallus (taxid:9031)]

 Score = 239 (89.2 bits), Expect = 4.3e-20, P = 4.3e-20
 Identities = 59/188 (31%), Positives = 95/188 (50%)

Query:   200 QKLTPEYKIGME-RLVKTKTPPMKALELWRESPAVLLCIRRPGCIMCRAEAHQLYAKKPI 258
             +K T E+   +E + + ++    KA ELW+++ AV++ +RRPG  +CR EA +L + KP 
Sbjct:    42 EKATLEFLEAIELKTLGSEPRTFKASELWKKNGAVIMAVRRPGUFLCREEASELSSLKPQ 101

Query:   259 FDALGIQLFAVLHEYIESEVKDFWPRYWGGVVVYDQGMEXXXXXXXXXXXXXXXXXXXXX 318
                LG+ L+AV+ E I +EV+DF   Y+ G +  D+                        
Sbjct:   102 LSKLGVPLYAVVKEKIGTEVEDF-QHYFQGEIFLDEKRSFYGPRKRKMMLSGFFRIGVWQ 160

Query:   319 NPRAIANYKRARTLGVEQNFKGEGEIKGGLFIVGRGRSGIAYQFIERNFGDWAPLAEVIE 378
             N      + RA   G   N +GEG   GG++++G GR GI  +  E+ FGD   L  V+E
Sbjct:   161 N------FFRAWKNGYSGNLEGEGFTLGGVYVIGAGRQGILLEHREKEFGDKVSLPSVLE 214

Query:   379 ICTQLQDQ 386
                +++ Q
Sbjct:   215 AAEKIKPQ 222

GO:0016209 "antioxidant activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

UNIPROTKB|F1NKG0 FAM213A "Redox-regulatory protein FAM213A" [Gallus gallus (taxid:9031)]

 Score = 231 (86.4 bits), Expect = 3.7e-19, P = 3.7e-19
 Identities = 58/188 (30%), Positives = 95/188 (50%)

Query:   200 QKLTPEYKIGME-RLVKTKTPPMKALELWRESPAVLLCIRRPGCIMCRAEAHQLYAKKPI 258
             +K T E+   +E + + ++    KA ELW+++ AV++ +RRPG  +CR EA +L + KP 
Sbjct:    42 EKATLEFLEAIELKTLGSEPRTFKASELWKKNGAVIMAVRRPG-FLCREEASELSSLKPQ 100

Query:   259 FDALGIQLFAVLHEYIESEVKDFWPRYWGGVVVYDQGMEXXXXXXXXXXXXXXXXXXXXX 318
                LG+ L+AV+ E I +EV+DF   Y+ G +  D+                        
Sbjct:   101 LSKLGVPLYAVVKEKIGTEVEDF-QHYFQGEIFLDEKRSFYGPRKRKMMLSGFFRIGVWQ 159

Query:   319 NPRAIANYKRARTLGVEQNFKGEGEIKGGLFIVGRGRSGIAYQFIERNFGDWAPLAEVIE 378
             N      + RA   G   N +GEG   GG++++G GR G+  +  E+ FGD   L  V+E
Sbjct:   160 N------FFRAWKNGYSGNLEGEGFTLGGVYVIGAGRQGVLLEHREKEFGDKVSLPSVLE 213

Query:   379 ICTQLQDQ 386
                +++ Q
Sbjct:   214 AAEKIKPQ 221

GO:0005739 "mitochondrion" evidence=IEA

GO:0016209 "antioxidant activity" evidence=IEA

GO:0045670 "regulation of osteoclast differentiation" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

ZFIN|ZDB-GENE-030131-2459 fam213aa "family with sequence similarity 213, member Aa" [Danio rerio (taxid:7955)]

 Score = 225 (84.3 bits), Expect = 1.9e-18, P = 1.9e-18
 Identities = 52/158 (32%), Positives = 79/158 (50%)

Query:   221 MKALELWRESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLHEYIESEVKD 280
             +KA  LW +S AV++ +RRPG + C  EA +L + KP  D LG+ L+AV+ E + +E++D
Sbjct:    64 LKAKALWEKSGAVIMAVRRPGTVKCLREASELSSLKPQLDELGVPLYAVVKENVGTEIQD 123

Query:   281 FWPRYWGGVVVYDQGMEXXXXXXXXXXXXXXXXXXXXXNPRAIANYKRARTLGVEQNFKG 340
             F P +  G +  D+                        N      + RA   G + N  G
Sbjct:   124 FRPHF-AGEIFLDEKQAFYGPQQRKMGGLGFIRLGVWQN------FVRAWRAGYQGNMNG 176

Query:   341 EGEIKGGLFIVGRGRSGIAYQFIERNFGDWAPLAEVIE 378
             EG I GG+F++G G  G+  +  E+ FGD   L  V+E
Sbjct:   177 EGFILGGVFVMGSGGQGVLLEHREKEFGDKVSLESVLE 214

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0016209 "antioxidant activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

UNIPROTKB|Q58CY6 FAM213B "Prostamide/prostaglandin F synthase" [Bos taurus (taxid:9913)]

 Score = 156 (60.0 bits), Expect = 1.0e-10, P = 1.0e-10
 Identities = 40/155 (25%), Positives = 74/155 (47%)

Query:   226 LWRESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLHEYIESEVKDFWPR- 284
             LW+E   V+  +RR GC++CR  A  L   K + D  G++L  V  E +   +++F    
Sbjct:    28 LWQEQACVVAGLRRFGCMVCRWIARDLSNLKGLLDQHGVRLVGVGPEALG--LQEFLDGG 85

Query:   285 YWGGVVVYDQGMEXXXXXXXXXXXXXXXXXXXXXNP-RAIANYKRARTLGVEQNFKGEGE 343
             Y+ G +  D+  +                      P R +A   +A+ +G++ N  G+  
Sbjct:    86 YFAGELYLDESKQFYKELGFKRYNSLSILPAALGKPVREVA--AKAKAVGIQGNLSGDLL 143

Query:   344 IKGGLFIVGRGRSGIAYQFIERNFGDWAPLAEVIE 378
               GGL +V +G   +   F++++ GD+APL  +++
Sbjct:   144 QSGGLLVVAKGGDKVLLHFVQKSPGDYAPLESILQ 178

GO:0016616 "oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor" evidence=ISS

GO:0001516 "prostaglandin biosynthetic process" evidence=ISS

GO:0005829 "cytosol" evidence=IEA

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: fgenesh4_pg.C_LG_VIII001005 hypothetical protein (415 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	399
pfam13911	113	pfam13911, AhpC-TSA_2, AhpC/TSA antioxidant enzyme	2e-25
cd02970	149	cd02970, PRX_like2, Peroxiredoxin (PRX)-like 2 fam	2e-15

>gnl|CDD|222452 pfam13911, AhpC-TSA_2, AhpC/TSA antioxidant enzyme

 Score = 98.9 bits (247), Expect = 2e-25
 Identities = 36/117 (30%), Positives = 53/117 (45%), Gaps = 5/117 (4%)

Query: 251 QLYAKKPIFDALGIQLFAVLHEYIESEVKDF-WPRYWGGVVVYDQGMEFFKALGGGKLLK 309
           +L A KP  DA GI+L AV         + F     +   +  D   + ++ALG  + LK
Sbjct: 1   RLSALKPELDAAGIKLVAVGIGDPG--AERFCKLTGFPFPLYVDPDRKLYRALGLKRGLK 58

Query: 310 DKFLSGFLLNPRAIANYKRARTLGVEQNFKGEGEIKGGLFIVGRGRSGIAYQFIERN 366
              L GFL         +RA+  G+  N  GEG   GG F+  +G  G+ Y+  +R 
Sbjct: 59  LSLLPGFLQKGVR-RILRRAKAAGIPGNLVGEGTQLGGTFLFDKG-GGVLYEHRDRG 113

This family contains proteins related to alkyl hydroperoxide reductase (AhpC) and thiol specific antioxidant (TSA). Length = 113

>gnl|CDD|239268 cd02970, PRX_like2, Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs

 Score = 72.8 bits (179), Expect = 2e-15
 Identities = 38/146 (26%), Positives = 58/146 (39%), Gaps = 18/146 (12%)

Query: 224 LELWRESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLHEYIESEVKDFWP 283
             L  E P V++  R  GC  CR     L    P  DALG++L AV  E  E        
Sbjct: 18  SALLGEGPVVVVFYRGFGCPFCREYLRALSKLLPELDALGVELVAVGPESPEKLEAFDKG 77

Query: 284 RYWGGVVVYDQGMEFFKALGGGKLLKDKFLSGFLLNPRAIANYKRART----LGVEQNFK 339
           ++    V  D   + ++ALG             L+     +N  RA      +G   N +
Sbjct: 78  KFLPFPVYADPDRKLYRALG-------------LVRSLPWSNTPRALWKNAAIGFRGNDE 124

Query: 340 GEGEIKGGLFIVGRGRSGIAYQFIER 365
           G+G    G+F++G     I +  ++R
Sbjct: 125 GDGLQLPGVFVIGPDG-TILFAHVDR 149

Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins. Length = 149

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	399
KOG4498	197	consensus Uncharacterized conserved protein [Funct	99.95
COG1225	157	Bcp Peroxiredoxin [Posttranslational modification,	99.91
cd02970	149	PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypot	99.91
PTZ00137	261	2-Cys peroxiredoxin; Provisional	99.83
TIGR03137	187	AhpC peroxiredoxin. This gene contains two invaria	99.82
PRK13191	215	putative peroxiredoxin; Provisional	99.81
PRK10382	187	alkyl hydroperoxide reductase subunit C; Provision	99.81
PRK15000	200	peroxidase; Provisional	99.8
cd03016	203	PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX sub	99.8
PRK13190	202	putative peroxiredoxin; Provisional	99.8
PF00578	124	AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Per	99.8
cd03015	173	PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-	99.8
PRK00522	167	tpx lipid hydroperoxide peroxidase; Provisional	99.8
cd03018	149	PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-lik	99.8
PF13911	115	AhpC-TSA_2: AhpC/TSA antioxidant enzyme	99.8
cd03013	155	PRX5_like Peroxiredoxin (PRX) family, PRX5-like su	99.79
PRK13599	215	putative peroxiredoxin; Provisional	99.79
PRK13189	222	peroxiredoxin; Provisional	99.79
cd03014	143	PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical	99.78
PRK09437	154	bcp thioredoxin-dependent thiol peroxidase; Review	99.76
cd02971	140	PRX_family Peroxiredoxin (PRX) family; composed of	99.76
cd03017	140	PRX_BCP Peroxiredoxin (PRX) family, Bacterioferrit	99.75
PTZ00253	199	tryparedoxin peroxidase; Provisional	99.72
PF08534	146	Redoxin: Redoxin; InterPro: IPR013740 This redoxin	99.71
cd02969	171	PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypot	99.6
COG0450	194	AhpC Peroxiredoxin [Posttranslational modification	99.59
KOG0855	211	consensus Alkyl hydroperoxide reductase, thiol spe	99.58
PRK03147	173	thiol-disulfide oxidoreductase; Provisional	99.57
cd03012	126	TlpA_like_DipZ_like TlpA-like family, DipZ-like su	99.54
PLN02412	167	probable glutathione peroxidase	99.46
TIGR02661	189	MauD methylamine dehydrogenase accessory protein M	99.44
TIGR00385	173	dsbE periplasmic protein thiol:disulfide oxidoredu	99.43
PRK15412	185	thiol:disulfide interchange protein DsbE; Provisio	99.43
PTZ00056	199	glutathione peroxidase; Provisional	99.39
PLN02399	236	phospholipid hydroperoxide glutathione peroxidase	99.36
PTZ00256	183	glutathione peroxidase; Provisional	99.34
cd02968	142	SCO SCO (an acronym for Synthesis of Cytochrome c	99.33
cd03010	127	TlpA_like_DsbE TlpA-like family, DsbE (also known	99.32
cd00340	152	GSH_Peroxidase Glutathione (GSH) peroxidase family	99.3
cd02967	114	mauD Methylamine utilization (mau) D family; mauD	99.27
TIGR02540	153	gpx7 putative glutathione peroxidase Gpx7. This mo	99.26
cd02966	116	TlpA_like_family TlpA-like family; composed of Tlp	99.24
KOG0854	224	consensus Alkyl hydroperoxide reductase, thiol spe	99.22
cd03011	123	TlpA_like_ScsD_MtbDsbE TlpA-like family, suppresso	99.11
KOG0852	196	consensus Alkyl hydroperoxide reductase, thiol spe	99.0
PRK14018	521	trifunctional thioredoxin/methionine sulfoxide red	98.96
cd03009	131	TryX_like_TryX_NRX Tryparedoxin (TryX)-like family	98.89
cd02964	132	TryX_like_family Tryparedoxin (TryX)-like family;	98.77
cd03008	146	TryX_like_RdCVF Tryparedoxin (TryX)-like family, R	98.69
PRK13728	181	conjugal transfer protein TrbB; Provisional	98.68
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	98.59
PRK10606	183	btuE putative glutathione peroxidase; Provisional	98.58
TIGR01626	184	ytfJ_HI0045 conserved hypothetical protein YtfJ-fa	98.54
PF13905	95	Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_	98.22
COG2077	158	Tpx Peroxiredoxin [Posttranslational modification,	98.13
TIGR02740	271	TraF-like TraF-like protein. This protein is relat	98.0
TIGR02738	153	TrbB type-F conjugative transfer system pilin asse	97.9
PF05988	211	DUF899: Bacterial protein of unknown function (DUF	97.83
PF13098	112	Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_	97.5
cd02951	125	SoxW SoxW family; SoxW is a bacterial periplasmic	97.29
cd02950	142	TxlA TRX-like protein A (TxlA) family; TxlA was or	97.12
KOG2501	157	consensus Thioredoxin, nucleoredoxin and related p	96.94
PF02630	174	SCO1-SenC: SCO1/SenC; InterPro: IPR003782 This fam	96.9
COG4312	247	Uncharacterized protein conserved in bacteria [Fun	96.89
COG1999	207	Uncharacterized protein SCO1/SenC/PrrC, involved i	96.82
cd03005	102	PDI_a_ERp46 PDIa family, endoplasmic reticulum pro	96.44
cd02999	100	PDI_a_ERp44_like PDIa family, endoplasmic reticulu	96.4
PF13728	215	TraF: F plasmid transfer operon protein	96.36
cd02947	93	TRX_family TRX family; composed of two groups: Gro	96.16
cd02949	97	TRX_NTR TRX domain, novel NADPH thioredoxin reduct	96.14
cd02948	102	TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fus	96.07
KOG0541	171	consensus Alkyl hydroperoxide reductase/peroxiredo	96.04
PF00085	103	Thioredoxin: Thioredoxin; InterPro: IPR013766 Thio	95.99
cd02953	104	DsbDgamma DsbD gamma family; DsbD gamma is the C-t	95.99
PRK10996	139	thioredoxin 2; Provisional	95.84
cd02993	109	PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfat	95.82
cd02961	101	PDI_a_family Protein Disulfide Isomerase (PDIa) fa	95.77
COG0678	165	AHP1 Peroxiredoxin [Posttranslational modification	95.71
cd02959	117	ERp19 Endoplasmic reticulum protein 19 (ERp19) fam	95.63
cd02963	111	TRX_DnaJ TRX domain, DnaJ domain containing protei	95.62
PRK09381	109	trxA thioredoxin; Provisional	95.5
cd01659	69	TRX_superfamily Thioredoxin (TRX) superfamily; a l	95.39
cd02997	104	PDI_a_PDIR PDIa family, PDIR subfamily; composed o	95.36
PTZ00051	98	thioredoxin; Provisional	95.36
cd00166	63	SAM Sterile alpha motif.; Widespread domain in sig	95.33
cd02956	96	ybbN ybbN protein family; ybbN is a hypothetical p	95.3
cd03002	109	PDI_a_MPD1_like PDI family, MPD1-like subfamily; c	95.26
TIGR01126	102	pdi_dom protein disulfide-isomerase domain. This m	95.23
cd03000	104	PDI_a_TMX3 PDIa family, TMX3 subfamily; composed o	95.22
cd02996	108	PDI_a_ERp44 PDIa family, endoplasmic reticulum pro	95.15
COG0526	127	TrxA Thiol-disulfide isomerase and thioredoxins [P	95.12
PF00536	64	SAM_1: SAM domain (Sterile alpha motif); InterPro:	95.11
cd02984	97	TRX_PICOT TRX domain, PICOT (for PKC-interacting c	95.09
TIGR01068	101	thioredoxin thioredoxin. Several proteins, such as	95.03
TIGR01295	122	PedC_BrcD bacteriocin transport accessory protein,	95.0
TIGR02739	256	TraF type-F conjugative transfer system pilin asse	94.92
cd03003	101	PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfam	94.87
PRK13703	248	conjugal pilus assembly protein TraF; Provisional	94.83
cd02998	105	PDI_a_ERp38 PDIa family, endoplasmic reticulum pro	94.41
cd03001	103	PDI_a_P5 PDIa family, P5 subfamily; composed of eu	94.38
cd02995	104	PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain	94.23
cd02985	103	TRX_CDSP32 TRX family, chloroplastic drought-induc	93.99
cd02994	101	PDI_a_TMX PDIa family, TMX subfamily; composed of	93.74
COG0386	162	BtuE Glutathione peroxidase [Posttranslational mod	93.72
cd03004	104	PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfam	93.67
cd03006	113	PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamil	93.25
PF13899	82	Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_	92.91
cd02962	152	TMX2 TMX2 family; composed of proteins similar to	92.9
TIGR01130	462	ER_PDI_fam protein disulfide isomerases, eukaryoti	92.29
cd02975	113	PfPDO_like_N Pyrococcus furiosus protein disulfide	92.22
cd02952	119	TRP14_like Human TRX-related protein 14 (TRP14)-li	92.08
TIGR00411	82	redox_disulf_1 small redox-active disulfide protei	91.92
PF07647	66	SAM_2: SAM domain (Sterile alpha motif); InterPro:	91.87
PTZ00102	477	disulphide isomerase; Provisional	91.53
cd02955	124	SSP411 TRX domain, SSP411 protein family; members	91.51
cd02992	114	PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidas	91.08
PTZ00443	224	Thioredoxin domain-containing protein; Provisional	90.42
cd02958	114	UAS UAS family; UAS is a domain of unknown functio	90.36
cd02989	113	Phd_like_TxnDC9 Phosducin (Phd)-like family, Thior	90.18
PF04592	238	SelP_N: Selenoprotein P, N terminal region; InterP	89.43
smart00454	68	SAM Sterile alpha motif. Widespread domain in sign	89.1
TIGR02196	74	GlrX_YruB Glutaredoxin-like protein, YruB-family.	88.69
cd02960	130	AGR Anterior Gradient (AGR) family; members of thi	88.32
PF13778	118	DUF4174: Domain of unknown function (DUF4174)	88.24
cd02973	67	TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-	88.16
PHA02278	103	thioredoxin-like protein	87.68
cd03026	89	AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxid	87.54
smart00594	122	UAS UAS domain.	87.46
cd02965	111	HyaE HyaE family; HyaE is also called HupG and Hox	87.45
PF00462	60	Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Gl	87.19
PF00255	108	GSHPx: Glutathione peroxidase; InterPro: IPR000889	87.18
PLN00410	142	U5 snRNP protein, DIM1 family; Provisional	87.09
PLN02309	457	5'-adenylylsulfate reductase	86.85
cd03028	90	GRX_PICOT_like Glutaredoxin (GRX) family, PKC-inte	86.41
TIGR00424	463	APS_reduc 5'-adenylylsulfate reductase, thioredoxi	86.34
PTZ00102	477	disulphide isomerase; Provisional	85.77
cd02976	73	NrdH NrdH-redoxin (NrdH) family; NrdH is a small m	85.61
TIGR00365	97	monothiol glutaredoxin, Grx4 family. The gene for	85.3
TIGR02180	84	GRX_euk Glutaredoxin. This model represents eukary	84.8
cd02957	113	Phd_like Phosducin (Phd)-like family; composed of	84.58
PF05176	252	ATP-synt_10: ATP10 protein; InterPro: IPR007849 Th	84.21
cd02986	114	DLP Dim1 family, Dim1-like protein (DLP) subfamily	84.09
PRK00293	571	dipZ thiol:disulfide interchange protein precursor	83.91
PRK10824	115	glutaredoxin-4; Provisional	83.7
cd03027	73	GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Eg	83.29
PF00837	237	T4_deiodinase: Iodothyronine deiodinase; InterPro:	82.78
TIGR02187	215	GlrX_arch Glutaredoxin-like domain protein. This f	81.67
KOG2792	280	consensus Putative cytochrome C oxidase assembly p	81.33
cd02982	103	PDI_b'_family Protein Disulfide Isomerase (PDIb')	80.84
TIGR02187	215	GlrX_arch Glutaredoxin-like domain protein. This f	80.37

>KOG4498 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.95  E-value=1.4e-28  Score=226.51  Aligned_cols=160  Identities=34%  Similarity=0.672  Sum_probs=146.4

Q ss_pred             ccCCCceechhhccCCCEEEEeecCCCCcchHHHHHHHHhccchhhhcCCeEEEEecCChhhHHhhhcC-CCCCceeEec
Q 015842          215 KTKTPPMKALELWRESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLHEYIESEVKDFWP-RYWGGVVVYD  293 (399)
Q Consensus       215 ~~~G~~VsLsdL~~~~pvVLvFyRg~gCP~Cr~el~~L~e~~pef~alGV~LVaIspE~~e~~ik~F~~-~~l~f~VLsD  293 (399)
                      ...|+.|++++||+++++||+|+|||+|..||+++++|.++++-++++|+.||+|+|+...+ +..|+. .+|..+||.|
T Consensus        36 ~~rg~~vp~~~L~~~~~avV~~vRrpgCvlCR~~aadLa~l~~~ld~~Gv~Li~vg~g~~~~-~~~f~~q~~f~gevylD  114 (197)
T KOG4498|consen   36 DSRGESVPVTSLFKERSAVVAFVRRPGCVLCREEAADLASLKDLLDELGVVLIAVGPGSHVQ-FEDFWDQTYFSGEVYLD  114 (197)
T ss_pred             hhcCceeehHHhhhcCCeEEEEeccCcEEEeHHHHHHHHHHHHHHHHhCCEEEEEeccceee-cchhhcccCcceeEEEc
Confidence            44699999999999999999999999999999999999999999999999999999976654 678885 7899999999


Q ss_pred             cchHHHHHhCCCcccccccccccccCHHHHHHHHHHHhcCCccccCCCCcccceEEEEecCCCcEEEEEecCCCCCCCCH
Q 015842          294 QGMEFFKALGGGKLLKDKFLSGFLLNPRAIANYKRARTLGVEQNFKGEGEIKGGLFIVGRGRSGIAYQFIERNFGDWAPL  373 (399)
Q Consensus       294 p~r~lYkaLGl~r~~r~s~lsgfl~~P~v~~~~~rA~~~G~~gn~~GD~~qLGGtFVId~gGg~I~yah~d~d~gDrad~  373 (399)
                      |++.+|+.++++++     .++++ .+.++.+.++++..|+.+|++||++++||+++|.+|+ .|.|.|++++++||+++
T Consensus       115 ~~~~~Y~~le~k~~-----~~g~l-~~g~~~~~~Ka~~~gv~gn~~gd~~~~gG~~~V~~G~-~il~~h~dk~~gD~~~i  187 (197)
T KOG4498|consen  115 PHRGFYKPLEFKRA-----EMGFL-RPGTDAAAVKAKAVGVEGNLEGDGLLSGGVLVVGRGK-KILFIHVDKETGDHVPI  187 (197)
T ss_pred             Cccceechhhhhcc-----ccccc-ccccHHHHHHHhhcccCCCcccChHHhCCeEEEecCC-eEEEEEecCCCCCCcCH
Confidence            99999999999752     24554 4888999999999999999999999999999999997 89999999999999999


Q ss_pred             HHHHHHHHh
Q 015842          374 AEVIEICTQ  382 (399)
Q Consensus       374 eeVLaAl~~  382 (399)
                      ++||++++.
T Consensus       188 ~~Vl~v~~~  196 (197)
T KOG4498|consen  188 DSVLQVVGK  196 (197)
T ss_pred             HHHHHHhhc
Confidence            999999874

>COG1225 Bcp Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]

Probab=99.91  E-value=6.4e-24  Score=192.18  Aligned_cols=151  Identities=19%  Similarity=0.155  Sum_probs=128.7

Q ss_pred             CCCCCCCCCcccccCccccccchhhhcccccccccCCCceechhhccCCCEEEEeecCCCCcchHHHHHHHHhccchhhh
Q 015842          182 PPVNEKVAPYSAIENISIQKLTPEYKIGMERLVKTKTPPMKALELWRESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDA  261 (399)
Q Consensus       182 a~~~~~~apl~~L~~i~l~~l~~~~~~g~~~~v~~~G~~VsLsdL~~~~pvVLvFyRg~gCP~Cr~el~~L~e~~pef~a  261 (399)
                      .+.+|+.||+|.|++.                   +|++|+|+++.. ++|||.||+..++|.|..|++++++.+++|++
T Consensus         3 ~l~~G~~aPdF~Lp~~-------------------~g~~v~Lsd~~G-k~VVLyFYPk~~TpgCT~Ea~~Frd~~~ef~~   62 (157)
T COG1225           3 MLKVGDKAPDFELPDQ-------------------DGETVSLSDLRG-KPVVLYFYPKDFTPGCTTEACDFRDLLEEFEK   62 (157)
T ss_pred             cCCCCCcCCCeEeecC-------------------CCCEEehHHhcC-CcEEEEECCCCCCCcchHHHHHHHHHHHHHHh
Confidence            4688999999999888                   588999999755 49999999999999999999999999999999


Q ss_pred             cCCeEEEEecCChhhHHhhhcC-CCCCceeEeccchHHHHHhCCCcccccccccccccCHHHHHHHHHHHhcCCccccCC
Q 015842          262 LGIQLFAVLHEYIESEVKDFWP-RYWGGVVVYDQGMEFFKALGGGKLLKDKFLSGFLLNPRAIANYKRARTLGVEQNFKG  340 (399)
Q Consensus       262 lGV~LVaIspE~~e~~ik~F~~-~~l~f~VLsDp~r~lYkaLGl~r~~r~s~lsgfl~~P~v~~~~~rA~~~G~~gn~~G  340 (399)
                      +|+.+++||++++.+ ++.|.+ +.++|++|||++++++++||+......                            .|
T Consensus        63 ~~a~V~GIS~Ds~~~-~~~F~~k~~L~f~LLSD~~~~v~~~ygv~~~k~~----------------------------~g  113 (157)
T COG1225          63 LGAVVLGISPDSPKS-HKKFAEKHGLTFPLLSDEDGEVAEAYGVWGEKKM----------------------------YG  113 (157)
T ss_pred             CCCEEEEEeCCCHHH-HHHHHHHhCCCceeeECCcHHHHHHhCccccccc----------------------------Cc
Confidence            999999999999986 899996 899999999999999999999531000                            01


Q ss_pred             C--CcccceEEEEecCCCcEEEEEecCCCCCCCCHHHHHHHHHhhh
Q 015842          341 E--GEIKGGLFIVGRGRSGIAYQFIERNFGDWAPLAEVIEICTQLQ  384 (399)
Q Consensus       341 D--~~qLGGtFVId~gGg~I~yah~d~d~gDrad~eeVLaAl~~l~  384 (399)
                      .  ....++|||||++| +|+|.|++....+|+  ++||++|+++.
T Consensus       114 k~~~~~~R~TfvId~dG-~I~~~~~~v~~~~h~--~~vl~~l~~l~  156 (157)
T COG1225         114 KEYMGIERSTFVIDPDG-KIRYVWRKVKVKGHA--DEVLAALKKLA  156 (157)
T ss_pred             cccccccceEEEECCCC-eEEEEecCCCCcccH--HHHHHHHHHhc
Confidence            1  13457999999996 999999665555555  99999998874

>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs

Probab=99.91  E-value=5.1e-24  Score=183.56  Aligned_cols=138  Identities=28%  Similarity=0.410  Sum_probs=111.1

Q ss_pred             CCCceechhhccCCCEEEEeecCCCCcchHHHHHHHHhccchhhhcCCeEEEEecCChhhHHhhhcC-CCCCceeEeccc
Q 015842          217 KTPPMKALELWRESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLHEYIESEVKDFWP-RYWGGVVVYDQG  295 (399)
Q Consensus       217 ~G~~VsLsdL~~~~pvVLvFyRg~gCP~Cr~el~~L~e~~pef~alGV~LVaIspE~~e~~ik~F~~-~~l~f~VLsDp~  295 (399)
                      +|+++++++++.++++||+|||+.|||+|+.++.+|++.++++.+.|+++|+|+.+..+. ...|.+ ..++|++++|++
T Consensus        11 ~g~~~~l~~~~~~~~~vl~f~~~~~Cp~C~~~~~~l~~~~~~~~~~~v~vv~V~~~~~~~-~~~~~~~~~~~~p~~~D~~   89 (149)
T cd02970          11 GGETVTLSALLGEGPVVVVFYRGFGCPFCREYLRALSKLLPELDALGVELVAVGPESPEK-LEAFDKGKFLPFPVYADPD   89 (149)
T ss_pred             CCCEEchHHHhcCCCEEEEEECCCCChhHHHHHHHHHHHHHHHHhcCeEEEEEeCCCHHH-HHHHHHhcCCCCeEEECCc
Confidence            499999999988899999999999999999999999999999999999999999988765 556664 678999999999


Q ss_pred             hHHHHHhCCCcccccccccccccCHHHHHHHHHHHhcCCccccCCCCcccceEEEEecCCCcEEEEEecC
Q 015842          296 MEFFKALGGGKLLKDKFLSGFLLNPRAIANYKRARTLGVEQNFKGEGEIKGGLFIVGRGRSGIAYQFIER  365 (399)
Q Consensus       296 r~lYkaLGl~r~~r~s~lsgfl~~P~v~~~~~rA~~~G~~gn~~GD~~qLGGtFVId~gGg~I~yah~d~  365 (399)
                      +.+|++||+...   ....  .. +..+.   ..+..+..++..|+++++||+||||++| +|+|.|+++
T Consensus        90 ~~~~~~~g~~~~---~~~~--~~-~~~~~---~~~~~~~~~~~~~~~~~~p~~fvid~~g-~i~~~~~~~  149 (149)
T cd02970          90 RKLYRALGLVRS---LPWS--NT-PRALW---KNAAIGFRGNDEGDGLQLPGVFVIGPDG-TILFAHVDR  149 (149)
T ss_pred             hhHHHHcCceec---CcHH--HH-HHHHh---hCcccccccCCCCcccccceEEEECCCC-eEEEEecCC
Confidence            999999999631   1111  11 22111   1222233445678889999999999996 999999874

Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.

>PTZ00137 2-Cys peroxiredoxin; Provisional

Probab=99.83  E-value=7.8e-20  Score=177.67  Aligned_cols=153  Identities=13%  Similarity=0.085  Sum_probs=125.2

Q ss_pred             CCCCCCCCCCcccccCccccccchhhhcccccccccCCCceechhhccCCCEEEEeecCCCCcchHHHHHHHHhccchhh
Q 015842          181 APPVNEKVAPYSAIENISIQKLTPEYKIGMERLVKTKTPPMKALELWRESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFD  260 (399)
Q Consensus       181 ~a~~~~~~apl~~L~~i~l~~l~~~~~~g~~~~v~~~G~~VsLsdL~~~~pvVLvFyRg~gCP~Cr~el~~L~e~~pef~  260 (399)
                      ..+.+|+.+|.|.+++..                +.+++.++++++++++++||+||++.|||.|..|+.+|++.+++|+
T Consensus        66 ~~~~vGd~aPdF~l~~~~----------------~g~~~~vsLsd~~kgk~vVL~FyPa~ftpvCt~El~~l~~~~~ef~  129 (261)
T PTZ00137         66 TSSLVGKLMPSFKGTALL----------------NDDLVQFNSSDYFKDSYGLLVFYPLDFTFVCPSELLGFSERLKEFE  129 (261)
T ss_pred             ccccCCCCCCCCEeeccc----------------CCCceEEeHHHHcCCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHH
Confidence            345899999977766531                1135679999987888999999999999999999999999999999


Q ss_pred             hcCCeEEEEecCChhhHHhhhcC--------CCCCceeEeccchHHHHHhCCCcccccccccccccCHHHHHHHHHHHhc
Q 015842          261 ALGIQLFAVLHEYIESEVKDFWP--------RYWGGVVVYDQGMEFFKALGGGKLLKDKFLSGFLLNPRAIANYKRARTL  332 (399)
Q Consensus       261 alGV~LVaIspE~~e~~ik~F~~--------~~l~f~VLsDp~r~lYkaLGl~r~~r~s~lsgfl~~P~v~~~~~rA~~~  332 (399)
                      +.|+++|+||.+++.. .+.|.+        ..++||+++|+++++.++||+..             +            
T Consensus       130 ~~gv~VigIS~Ds~~~-h~aw~~~~~~~~g~~~l~fPlLsD~~~~iakayGv~~-------------~------------  183 (261)
T PTZ00137        130 ERGVKVLGVSVDSPFS-HKAWKELDVRQGGVSPLKFPLFSDISREVSKSFGLLR-------------D------------  183 (261)
T ss_pred             HCCCEEEEEECCCHHH-HHHHHhhhhhhccccCcceEEEEcCChHHHHHcCCCC-------------c------------
Confidence            9999999999988743 455542        36889999999999999999831             0            


Q ss_pred             CCccccCCCCcccceEEEEecCCCcEEEEEecCCCCCCCCHHHHHHHHHhhhh
Q 015842          333 GVEQNFKGEGEIKGGLFIVGRGRSGIAYQFIERNFGDWAPLAEVIEICTQLQD  385 (399)
Q Consensus       333 G~~gn~~GD~~qLGGtFVId~gGg~I~yah~d~d~gDrad~eeVLaAl~~l~~  385 (399)
                              .++.+|++||||++| +|+|.++......+ +++|+|++++++|.
T Consensus       184 --------~g~a~R~tFIID~dG-~I~~~~~~~~~~gr-~v~eiLr~l~alq~  226 (261)
T PTZ00137        184 --------EGFSHRASVLVDKAG-VVKHVAVYDLGLGR-SVDETLRLFDAVQF  226 (261)
T ss_pred             --------CCceecEEEEECCCC-EEEEEEEeCCCCCC-CHHHHHHHHHHhch
Confidence                    123578999999996 99999976554444 89999999999875

>TIGR03137 AhpC peroxiredoxin

Probab=99.82  E-value=1.5e-19  Score=166.20  Aligned_cols=148  Identities=13%  Similarity=0.057  Sum_probs=121.2

Q ss_pred             CCCCCCCcccccCccccccchhhhcccccccccCCC--ceechhhccCCCEEEEeecCCCCcchHHHHHHHHhccchhhh
Q 015842          184 VNEKVAPYSAIENISIQKLTPEYKIGMERLVKTKTP--PMKALELWRESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDA  261 (399)
Q Consensus       184 ~~~~~apl~~L~~i~l~~l~~~~~~g~~~~v~~~G~--~VsLsdL~~~~pvVLvFyRg~gCP~Cr~el~~L~e~~pef~a  261 (399)
                      .+|+.+|.|.+++.     +             +|+  .++++++ +++++||+|||+.|||.|+.++.+|++.+++|++
T Consensus         3 ~~G~~aP~f~l~~~-----~-------------~g~~~~~sl~d~-~Gk~vvl~F~p~~~cp~C~~el~~l~~~~~~~~~   63 (187)
T TIGR03137         3 LINTEIKPFKATAY-----H-------------NGEFVEVTDEDV-KGKWSVFFFYPADFTFVCPTELEDLADKYAELKK   63 (187)
T ss_pred             ccCCcCCCcEeeec-----c-------------CCceeEecHHHH-CCCEEEEEEECCCcCCcCHHHHHHHHHHHHHHHh
Confidence            57889997776653     1             254  6888886 6679999999999999999999999999999999


Q ss_pred             cCCeEEEEecCChhhHHhhhcC-----CCCCceeEeccchHHHHHhCCCcccccccccccccCHHHHHHHHHHHhcCCcc
Q 015842          262 LGIQLFAVLHEYIESEVKDFWP-----RYWGGVVVYDQGMEFFKALGGGKLLKDKFLSGFLLNPRAIANYKRARTLGVEQ  336 (399)
Q Consensus       262 lGV~LVaIspE~~e~~ik~F~~-----~~l~f~VLsDp~r~lYkaLGl~r~~r~s~lsgfl~~P~v~~~~~rA~~~G~~g  336 (399)
                      .|+++|+|+.+.+.. .+.|.+     ..++|++++|++..+.++||+..             +.               
T Consensus        64 ~gv~vi~VS~D~~~~-~~~~~~~~~~~~~l~fpllsD~~~~~a~~~gv~~-------------~~---------------  114 (187)
T TIGR03137        64 LGVEVYSVSTDTHFV-HKAWHDTSEAIGKITYPMLGDPTGVLTRNFGVLI-------------EE---------------  114 (187)
T ss_pred             cCCcEEEEeCCCHHH-HHHHHhhhhhccCcceeEEECCccHHHHHhCCcc-------------cC---------------
Confidence            999999999888754 566653     25899999999999999999841             00               


Q ss_pred             ccCCCCcccceEEEEecCCCcEEEEEecCCCCCCCCHHHHHHHHHhhhh
Q 015842          337 NFKGEGEIKGGLFIVGRGRSGIAYQFIERNFGDWAPLAEVIEICTQLQD  385 (399)
Q Consensus       337 n~~GD~~qLGGtFVId~gGg~I~yah~d~d~gDrad~eeVLaAl~~l~~  385 (399)
                          .+...|++||||++| +|+|.|+......+ +.++||++++.++-
T Consensus       115 ----~g~~~p~tfiID~~G-~I~~~~~~~~~~~~-~~~~ll~~l~~~~~  157 (187)
T TIGR03137       115 ----AGLADRGTFVIDPEG-VIQAVEITDNGIGR-DASELLRKIKAAQY  157 (187)
T ss_pred             ----CCceeeEEEEECCCC-EEEEEEEeCCCCCC-CHHHHHHHHHHhhh
Confidence                012468999999996 99999998877776 89999999887754

This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue.

>PRK13191 putative peroxiredoxin; Provisional

Probab=99.81  E-value=3.5e-19  Score=168.12  Aligned_cols=150  Identities=15%  Similarity=0.042  Sum_probs=122.8

Q ss_pred             CCCCCCCCCcccccCccccccchhhhcccccccccCCCceechhhccCCCEEEEeecCCCCcchHHHHHHHHhccchhhh
Q 015842          182 PPVNEKVAPYSAIENISIQKLTPEYKIGMERLVKTKTPPMKALELWRESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDA  261 (399)
Q Consensus       182 a~~~~~~apl~~L~~i~l~~l~~~~~~g~~~~v~~~G~~VsLsdL~~~~pvVLvFyRg~gCP~Cr~el~~L~e~~pef~a  261 (399)
                      .+.+|+.+|.|.+++.                   +|+ +.+.+.++++++||+||++.|||.|..|+.+|++.+++|++
T Consensus         6 ~~~iG~~aPdF~l~~~-------------------~G~-~~l~~~~~GK~vvLff~pa~ftpvC~tEl~~l~~~~~ef~~   65 (215)
T PRK13191          6 IPLIGEKFPEMEVITT-------------------HGK-IKLPDDYKGRWFVLFSHPGDFTPVCTTEFYSFAKKYEEFKK   65 (215)
T ss_pred             cccCCCcCCCCEeecC-------------------CCC-EEcHHHhCCCcEEEEEeCCCCCCcCHHHHHHHHHHHHHHHH
Confidence            5678999997776654                   365 66766567778999999999999999999999999999999


Q ss_pred             cCCeEEEEecCChhhHHhhhcC-------CCCCceeEeccchHHHHHhCCCcccccccccccccCHHHHHHHHHHHhcCC
Q 015842          262 LGIQLFAVLHEYIESEVKDFWP-------RYWGGVVVYDQGMEFFKALGGGKLLKDKFLSGFLLNPRAIANYKRARTLGV  334 (399)
Q Consensus       262 lGV~LVaIspE~~e~~ik~F~~-------~~l~f~VLsDp~r~lYkaLGl~r~~r~s~lsgfl~~P~v~~~~~rA~~~G~  334 (399)
                      +|++||+||.++... .+.|..       ..++|++++|+++++.++||+..             +.             
T Consensus        66 ~g~~VigvS~Ds~~~-h~aw~~~~~~~~~~~i~fPllsD~~~~ia~~ygv~~-------------~~-------------  118 (215)
T PRK13191         66 LNTELIGLSVDSNIS-HIEWVMWIEKNLKVEVPFPIIADPMGNVAKRLGMIH-------------AE-------------  118 (215)
T ss_pred             CCCEEEEEECCCHHH-HHHHHhhHHHhcCCCCceEEEECCchHHHHHcCCcc-------------cc-------------
Confidence            999999999988764 444431       36899999999999999999841             10             


Q ss_pred             ccccCCCCcccceEEEEecCCCcEEEEEecCCCCCCCCHHHHHHHHHhhhh
Q 015842          335 EQNFKGEGEIKGGLFIVGRGRSGIAYQFIERNFGDWAPLAEVIEICTQLQD  385 (399)
Q Consensus       335 ~gn~~GD~~qLGGtFVId~gGg~I~yah~d~d~gDrad~eeVLaAl~~l~~  385 (399)
                           +.+..+|++||||++| +|++.++......| +++|+|++|++++.
T Consensus       119 -----~~~~~~r~tfIID~~G-~Ir~~~~~~~~~gr-~~~eilr~l~alq~  162 (215)
T PRK13191        119 -----SSTATVRAVFIVDDKG-TVRLILYYPMEIGR-NIDEILRAIRALQL  162 (215)
T ss_pred             -----cCCceeEEEEEECCCC-EEEEEEecCCCCCC-CHHHHHHHHHHhhh
Confidence                 1123579999999996 99999988866666 99999999999874

>PRK10382 alkyl hydroperoxide reductase subunit C; Provisional

Probab=99.81  E-value=3.9e-19  Score=164.73  Aligned_cols=151  Identities=9%  Similarity=0.024  Sum_probs=122.9

Q ss_pred             CCCCCCCcccccCccccccchhhhcccccccccCCCceechhhccCCCEEEEeecCCCCcchHHHHHHHHhccchhhhcC
Q 015842          184 VNEKVAPYSAIENISIQKLTPEYKIGMERLVKTKTPPMKALELWRESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALG  263 (399)
Q Consensus       184 ~~~~~apl~~L~~i~l~~l~~~~~~g~~~~v~~~G~~VsLsdL~~~~pvVLvFyRg~gCP~Cr~el~~L~e~~pef~alG  263 (399)
                      ..|.++|.|..+..                .+.+...++|+++ +++++||+||+..|||.|..|+.+|++.+++|++.|
T Consensus         3 ~~~~~~p~f~~~~~----------------~~g~~~~v~L~d~-~Gk~vvL~F~P~~~~p~C~~el~~l~~~~~~f~~~g   65 (187)
T PRK10382          3 LINTKIKPFKNQAF----------------KNGEFIEVTEKDT-EGRWSVFFFYPADFTFVCPTELGDVADHYEELQKLG   65 (187)
T ss_pred             ccCCcCCCcEEEEE----------------eCCcceEEEHHHh-CCCeEEEEEECCCCCCcCHHHHHHHHHHHHHHHhCC
Confidence            46888886665443                1223567888886 566999999999999999999999999999999999


Q ss_pred             CeEEEEecCChhhHHhhhcC-----CCCCceeEeccchHHHHHhCCCcccccccccccccCHHHHHHHHHHHhcCCcccc
Q 015842          264 IQLFAVLHEYIESEVKDFWP-----RYWGGVVVYDQGMEFFKALGGGKLLKDKFLSGFLLNPRAIANYKRARTLGVEQNF  338 (399)
Q Consensus       264 V~LVaIspE~~e~~ik~F~~-----~~l~f~VLsDp~r~lYkaLGl~r~~r~s~lsgfl~~P~v~~~~~rA~~~G~~gn~  338 (399)
                      +++|+||.+++.. .+.|.+     ..++|++++|++..+.++||+..             +.                 
T Consensus        66 ~~vigIS~D~~~~-~~a~~~~~~~~~~l~fpllsD~~~~ia~~ygv~~-------------~~-----------------  114 (187)
T PRK10382         66 VDVYSVSTDTHFT-HKAWHSSSETIAKIKYAMIGDPTGALTRNFDNMR-------------ED-----------------  114 (187)
T ss_pred             CEEEEEeCCCHHH-HHHHHHhhccccCCceeEEEcCchHHHHHcCCCc-------------cc-----------------
Confidence            9999999998865 677763     36899999999999999999831             10                 


Q ss_pred             CCCCcccceEEEEecCCCcEEEEEecCCCCCCCCHHHHHHHHHhhhhh
Q 015842          339 KGEGEIKGGLFIVGRGRSGIAYQFIERNFGDWAPLAEVIEICTQLQDQ  386 (399)
Q Consensus       339 ~GD~~qLGGtFVId~gGg~I~yah~d~d~gDrad~eeVLaAl~~l~~~  386 (399)
                        .++..|++||||++| +|+|.|+......+ +++++|++|++++-.
T Consensus       115 --~g~~~r~tfIID~~G-~I~~~~~~~~~~~~-~~~eil~~l~alq~~  158 (187)
T PRK10382        115 --EGLADRATFVVDPQG-IIQAIEVTAEGIGR-DASDLLRKIKAAQYV  158 (187)
T ss_pred             --CCceeeEEEEECCCC-EEEEEEEeCCCCCC-CHHHHHHHHHhhhhH
Confidence              112358999999996 99999998755555 899999999998853

>PRK15000 peroxidase; Provisional

Probab=99.80  E-value=6.8e-19  Score=164.31  Aligned_cols=162  Identities=16%  Similarity=0.129  Sum_probs=126.4

Q ss_pred             CCCCCCCcccccCccccccchhhhcccccccccCCCc---eechhhccCCCEEEEeecCCCCcchHHHHHHHHhccchhh
Q 015842          184 VNEKVAPYSAIENISIQKLTPEYKIGMERLVKTKTPP---MKALELWRESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFD  260 (399)
Q Consensus       184 ~~~~~apl~~L~~i~l~~l~~~~~~g~~~~v~~~G~~---VsLsdL~~~~pvVLvFyRg~gCP~Cr~el~~L~e~~pef~  260 (399)
                      .+|+.+|.|.+++.     .            .+|+.   +++++.++++++||+||++.|||.|..|+.+|++.+++|+
T Consensus         3 ~vg~~aPdF~~~~~-----~------------~~g~~~~~~~l~~~~~gk~vvL~F~p~~~t~vC~~El~~l~~~~~~f~   65 (200)
T PRK15000          3 LVTRQAPDFTAAAV-----L------------GSGEIVDKFNFKQHTNGKTTVLFFWPMDFTFVCPSELIAFDKRYEEFQ   65 (200)
T ss_pred             cCCCcCCCCEeecc-----c------------CCCceeeeeeHHHHhCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHH
Confidence            47889997766554     1            13554   4555555788999999999999999999999999999999


Q ss_pred             hcCCeEEEEecCChhhHHhhhcC-----C---CCCceeEeccchHHHHHhCCCcccccccccccccCHHHHHHHHHHHhc
Q 015842          261 ALGIQLFAVLHEYIESEVKDFWP-----R---YWGGVVVYDQGMEFFKALGGGKLLKDKFLSGFLLNPRAIANYKRARTL  332 (399)
Q Consensus       261 alGV~LVaIspE~~e~~ik~F~~-----~---~l~f~VLsDp~r~lYkaLGl~r~~r~s~lsgfl~~P~v~~~~~rA~~~  332 (399)
                      +.|++||+||.++... .+.|.+     .   .++|++++|+++.+.++||+..             +.           
T Consensus        66 ~~g~~vigvS~D~~~~-~~~w~~~~~~~~g~~~i~fpllsD~~~~ia~~ygv~~-------------~~-----------  120 (200)
T PRK15000         66 KRGVEVVGVSFDSEFV-HNAWRNTPVDKGGIGPVKYAMVADVKREIQKAYGIEH-------------PD-----------  120 (200)
T ss_pred             HCCCEEEEEECCCHHH-HHHHHhhHHHhCCccccCceEEECCCcHHHHHcCCcc-------------CC-----------
Confidence            9999999999988753 444431     2   3699999999999999999841             10           


Q ss_pred             CCccccCCCCcccceEEEEecCCCcEEEEEecCCCCCCCCHHHHHHHHHhhhhhh----------cccccccccc
Q 015842          333 GVEQNFKGEGEIKGGLFIVGRGRSGIAYQFIERNFGDWAPLAEVIEICTQLQDQQ----------RDQSETIKTS  397 (399)
Q Consensus       333 G~~gn~~GD~~qLGGtFVId~gGg~I~yah~d~d~gDrad~eeVLaAl~~l~~~~----------~~~~~~~~~~  397 (399)
                              .++.+|++||||++| +|++.+.+...-.| ++++||+++++++-..          ++|.++|+.+
T Consensus       121 --------~g~~~r~tfiID~~G-~I~~~~~~~~~~gr-~~~eilr~l~al~~~~~~~~~~p~~w~~g~~~~~~~  185 (200)
T PRK15000        121 --------EGVALRGSFLIDANG-IVRHQVVNDLPLGR-NIDEMLRMVDALQFHEEHGDVCPAQWEKGKEGMNAS  185 (200)
T ss_pred             --------CCcEEeEEEEECCCC-EEEEEEecCCCCCC-CHHHHHHHHHHhhhHHhcCCCcCCCCCCCCceeccC
Confidence                    123479999999996 99999998766666 8999999999887422          5667777654

>cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine

Probab=99.80  E-value=6.4e-19  Score=164.15  Aligned_cols=150  Identities=17%  Similarity=0.179  Sum_probs=119.8

Q ss_pred             CCCCCCcccccCccccccchhhhcccccccccCCCceechhhccCCCEEEEeecCCCCcchHHHHHHHHhccchhhhcCC
Q 015842          185 NEKVAPYSAIENISIQKLTPEYKIGMERLVKTKTPPMKALELWRESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALGI  264 (399)
Q Consensus       185 ~~~~apl~~L~~i~l~~l~~~~~~g~~~~v~~~G~~VsLsdL~~~~pvVLvFyRg~gCP~Cr~el~~L~e~~pef~alGV  264 (399)
                      .|+.+|.|.+++.                   .| .+++.++..++++||+||+..|||.|+.++.+|++.+++|++.|+
T Consensus         1 vG~~aP~F~~~~~-------------------~g-~~~l~d~~g~k~vvlf~~pa~~cp~C~~el~~l~~~~~~f~~~gv   60 (203)
T cd03016           1 LGDTAPNFEADTT-------------------HG-PIKFHDYLGDSWGILFSHPADFTPVCTTELGAFAKLAPEFKKRNV   60 (203)
T ss_pred             CcCCCCCeEEecC-------------------CC-cEeHHHHcCCCEEEEEEecCCCCCcCHHHHHHHHHHHHHHHHcCC
Confidence            3678887766554                   25 588999755468899999999999999999999999999999999


Q ss_pred             eEEEEecCChhhHHhhhc-------CCCCCceeEeccchHHHHHhCCCcccccccccccccCHHHHHHHHHHHhcCCccc
Q 015842          265 QLFAVLHEYIESEVKDFW-------PRYWGGVVVYDQGMEFFKALGGGKLLKDKFLSGFLLNPRAIANYKRARTLGVEQN  337 (399)
Q Consensus       265 ~LVaIspE~~e~~ik~F~-------~~~l~f~VLsDp~r~lYkaLGl~r~~r~s~lsgfl~~P~v~~~~~rA~~~G~~gn  337 (399)
                      ++|+|+.++... .+.|.       +..++|++++|+++.++++||+..             +.                
T Consensus        61 ~vigvS~D~~~~-~~~~~~~i~~~~~~~~~fpil~D~~~~ia~~yg~~~-------------~~----------------  110 (203)
T cd03016          61 KLIGLSVDSVES-HIKWIEDIEEYTGVEIPFPIIADPDREVAKLLGMID-------------PD----------------  110 (203)
T ss_pred             EEEEEECCCHHH-HHHHHhhHHHhcCCCCceeEEECchHHHHHHcCCcc-------------cc----------------
Confidence            999999988754 33333       247899999999999999999841             11                


Q ss_pred             cCCCCcccceEEEEecCCCcEEEEEecCCCCCCCCHHHHHHHHHhhhhhh
Q 015842          338 FKGEGEIKGGLFIVGRGRSGIAYQFIERNFGDWAPLAEVIEICTQLQDQQ  387 (399)
Q Consensus       338 ~~GD~~qLGGtFVId~gGg~I~yah~d~d~gDrad~eeVLaAl~~l~~~~  387 (399)
                       .|.....+++||||++| +|+|.++.+....+ +.+++++++++++...
T Consensus       111 -~~~~~~~r~~fiID~~G-~I~~~~~~~~~~gr-~~~ell~~l~~lq~~~  157 (203)
T cd03016         111 -AGSTLTVRAVFIIDPDK-KIRLILYYPATTGR-NFDEILRVVDALQLTD  157 (203)
T ss_pred             -CCCCceeeEEEEECCCC-eEEEEEecCCCCCC-CHHHHHHHHHHHhhHh
Confidence             02234568999999996 99999987755554 7999999999987543

They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an

>PRK13190 putative peroxiredoxin; Provisional

Probab=99.80  E-value=7.6e-19  Score=163.82  Aligned_cols=147  Identities=17%  Similarity=0.151  Sum_probs=119.3

Q ss_pred             CCCCCCCCcccccCccccccchhhhcccccccccCCCceechhhccCCCEEEEeecCCCCcchHHHHHHHHhccchhhhc
Q 015842          183 PVNEKVAPYSAIENISIQKLTPEYKIGMERLVKTKTPPMKALELWRESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDAL  262 (399)
Q Consensus       183 ~~~~~~apl~~L~~i~l~~l~~~~~~g~~~~v~~~G~~VsLsdL~~~~pvVLvFyRg~gCP~Cr~el~~L~e~~pef~al  262 (399)
                      +..|+.+|.|.+++.                   .| .++++++ +++++||+||++.|||+|+.|+.+|++.+++|++.
T Consensus         2 ~~vG~~aP~F~~~~~-------------------~g-~v~l~d~-~gk~vvL~~~p~~~cp~C~~El~~l~~~~~~f~~~   60 (202)
T PRK13190          2 VKLGQKAPDFTVNTT-------------------KG-PIDLSKY-KGKWVLLFSHPADFTPVCTTEFIAFSRRYEDFKKL   60 (202)
T ss_pred             CCCCCCCCCcEEecC-------------------CC-cEeHHHh-CCCEEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHC
Confidence            467899997777644                   25 6899996 66678888999999999999999999999999999


Q ss_pred             CCeEEEEecCChhhHHhhhc----C-C--CCCceeEeccchHHHHHhCCCcccccccccccccCHHHHHHHHHHHhcCCc
Q 015842          263 GIQLFAVLHEYIESEVKDFW----P-R--YWGGVVVYDQGMEFFKALGGGKLLKDKFLSGFLLNPRAIANYKRARTLGVE  335 (399)
Q Consensus       263 GV~LVaIspE~~e~~ik~F~----~-~--~l~f~VLsDp~r~lYkaLGl~r~~r~s~lsgfl~~P~v~~~~~rA~~~G~~  335 (399)
                      |+++|+|+.++... .++|.    + .  .++|++++|+++.++++||+..             +.              
T Consensus        61 ~~~vi~vS~D~~~~-~~~w~~~~~~~~g~~~~fPll~D~~~~ia~~ygv~~-------------~~--------------  112 (202)
T PRK13190         61 GVELVGLSVDSIYS-HIAWLRDIEERFGIKIPFPVIADIDKELAREYNLID-------------EN--------------  112 (202)
T ss_pred             CCEEEEEeCCCHHH-HHHHHHhHHHhcCCCceEEEEECCChHHHHHcCCcc-------------cc--------------
Confidence            99999999987753 33332    2 2  3689999999999999999841             10              


Q ss_pred             cccCCCCcccceEEEEecCCCcEEEEEecCCCCCCCCHHHHHHHHHhhhh
Q 015842          336 QNFKGEGEIKGGLFIVGRGRSGIAYQFIERNFGDWAPLAEVIEICTQLQD  385 (399)
Q Consensus       336 gn~~GD~~qLGGtFVId~gGg~I~yah~d~d~gDrad~eeVLaAl~~l~~  385 (399)
                           ++..+|++||||++| +|+|.+.......| +++|+|++++.++.
T Consensus       113 -----~g~~~p~~fiId~~G-~I~~~~~~~~~~gr-~~~ellr~l~~l~~  155 (202)
T PRK13190        113 -----SGATVRGVFIIDPNQ-IVRWMIYYPAETGR-NIDEIIRITKALQV  155 (202)
T ss_pred             -----CCcEEeEEEEECCCC-EEEEEEEeCCCCCC-CHHHHHHHHHHhhh
Confidence                 112479999999996 99999987766655 89999999999875

>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells

Probab=99.80  E-value=3e-19  Score=149.63  Aligned_cols=123  Identities=20%  Similarity=0.257  Sum_probs=107.4

Q ss_pred             CCCCCCcccccCccccccchhhhcccccccccCCCceechhhccCCCEEEEeecCCCCcchHHHHHHHHhccchhhhcCC
Q 015842          185 NEKVAPYSAIENISIQKLTPEYKIGMERLVKTKTPPMKALELWRESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALGI  264 (399)
Q Consensus       185 ~~~~apl~~L~~i~l~~l~~~~~~g~~~~v~~~G~~VsLsdL~~~~pvVLvFyRg~gCP~Cr~el~~L~e~~pef~alGV  264 (399)
                      +|+++|.+.+++.                   +|+.++++++ +++|+||.||+..|||.|..++.+|++++.++++.|+
T Consensus         1 vG~~~P~f~l~~~-------------------~g~~~~l~~l-~gk~~vl~f~~~~~c~~c~~~l~~l~~~~~~~~~~~~   60 (124)
T PF00578_consen    1 VGDKAPDFTLTDS-------------------DGKTVSLSDL-KGKPVVLFFWPTAWCPFCQAELPELNELYKKYKDKGV   60 (124)
T ss_dssp             TTSBGGCEEEETT-------------------TSEEEEGGGG-TTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTE
T ss_pred             CcCCCCCcEeECC-------------------CCCEEEHHHH-CCCcEEEEEeCccCccccccchhHHHHHhhhhccceE
Confidence            5889997777665                   4899999999 7789999999999999999999999999999999999


Q ss_pred             eEEEEecCChhhHHhhhcC-CCCCceeEeccchHHHHHhCCCcccccccccccccCHHHHHHHHHHHhcCCccccCCCCc
Q 015842          265 QLFAVLHEYIESEVKDFWP-RYWGGVVVYDQGMEFFKALGGGKLLKDKFLSGFLLNPRAIANYKRARTLGVEQNFKGEGE  343 (399)
Q Consensus       265 ~LVaIspE~~e~~ik~F~~-~~l~f~VLsDp~r~lYkaLGl~r~~r~s~lsgfl~~P~v~~~~~rA~~~G~~gn~~GD~~  343 (399)
                      ++|+|+.+..+. ++.|.+ ..++|++++|++..++++||+..           . .                    ...
T Consensus        61 ~vi~is~d~~~~-~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~-----------~-~--------------------~~~  107 (124)
T PF00578_consen   61 QVIGISTDDPEE-IKQFLEEYGLPFPVLSDPDGELAKAFGIED-----------E-K--------------------DTL  107 (124)
T ss_dssp             EEEEEESSSHHH-HHHHHHHHTCSSEEEEETTSHHHHHTTCEE-----------T-T--------------------TSE
T ss_pred             Eeeecccccccc-hhhhhhhhccccccccCcchHHHHHcCCcc-----------c-c--------------------CCc
Confidence            999999988874 788775 66999999999999999999852           1 0                    235


Q ss_pred             ccceEEEEecCCCcEEEE
Q 015842          344 IKGGLFIVGRGRSGIAYQ  361 (399)
Q Consensus       344 qLGGtFVId~gGg~I~ya  361 (399)
                      +.|++||||++| +|+|.
T Consensus       108 ~~p~~~lid~~g-~I~~~  124 (124)
T PF00578_consen  108 ALPAVFLIDPDG-KIRYA  124 (124)
T ss_dssp             ESEEEEEEETTS-BEEEE
T ss_pred             eEeEEEEECCCC-EEEeC
Confidence            689999999996 89985

Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....

>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides

Probab=99.80  E-value=1.2e-18  Score=157.37  Aligned_cols=152  Identities=15%  Similarity=0.094  Sum_probs=120.9

Q ss_pred             CCCCCCcccccCccccccchhhhcccccccccCCCceechhhccCCCEEEEeecCCCCcchHHHHHHHHhccchhhhcCC
Q 015842          185 NEKVAPYSAIENISIQKLTPEYKIGMERLVKTKTPPMKALELWRESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALGI  264 (399)
Q Consensus       185 ~~~~apl~~L~~i~l~~l~~~~~~g~~~~v~~~G~~VsLsdL~~~~pvVLvFyRg~gCP~Cr~el~~L~e~~pef~alGV  264 (399)
                      +|+.+|.|.++++     .+          +.+|+.++++++ +++++||.|+|+.|||.|..++..|++++++|.+.|+
T Consensus         1 vG~~aP~f~~~~~-----~g----------~~~~~~~~l~~~-~Gk~vvl~F~~~~~c~~C~~~l~~l~~~~~~~~~~~v   64 (173)
T cd03015           1 VGKKAPDFKATAV-----VP----------NGEFKEISLSDY-KGKWVVLFFYPLDFTFVCPTEIIAFSDRYEEFKKLNA   64 (173)
T ss_pred             CCCcCCCCEeecc-----cC----------CCCceEEehHHh-CCCEEEEEEECCCCCCcCHHHHHHHHHHHHHHHHCCC
Confidence            4788997777666     10          012479999997 5679999999999999999999999999999999999


Q ss_pred             eEEEEecCChhhHHhhhcC--------CCCCceeEeccchHHHHHhCCCcccccccccccccCHHHHHHHHHHHhcCCcc
Q 015842          265 QLFAVLHEYIESEVKDFWP--------RYWGGVVVYDQGMEFFKALGGGKLLKDKFLSGFLLNPRAIANYKRARTLGVEQ  336 (399)
Q Consensus       265 ~LVaIspE~~e~~ik~F~~--------~~l~f~VLsDp~r~lYkaLGl~r~~r~s~lsgfl~~P~v~~~~~rA~~~G~~g  336 (399)
                      ++|+|+.+..+. .+.|.+        +.++|++++|++..++++||+..            .+                
T Consensus        65 ~vv~Is~d~~~~-~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~~~~gv~~------------~~----------------  115 (173)
T cd03015          65 EVLGVSTDSHFS-HLAWRNTPRKEGGLGKINFPLLADPKKKISRDYGVLD------------EE----------------  115 (173)
T ss_pred             EEEEEecCCHHH-HHHHHHhhhhhCCccCcceeEEECCchhHHHHhCCcc------------cc----------------
Confidence            999999877543 344543        35899999999999999999851            01                


Q ss_pred             ccCCCCcccceEEEEecCCCcEEEEEecCCCCCCCCHHHHHHHHHhhhhhh
Q 015842          337 NFKGEGEIKGGLFIVGRGRSGIAYQFIERNFGDWAPLAEVIEICTQLQDQQ  387 (399)
Q Consensus       337 n~~GD~~qLGGtFVId~gGg~I~yah~d~d~gDrad~eeVLaAl~~l~~~~  387 (399)
                          .++.+|.+||||++| +|+|.|+......+ +.++||++|+.++..-
T Consensus       116 ----~~~~~p~~~lID~~G-~I~~~~~~~~~~~~-~~~~il~~l~~~~~~~  160 (173)
T cd03015         116 ----EGVALRGTFIIDPEG-IIRHITVNDLPVGR-SVDETLRVLDALQFVE  160 (173)
T ss_pred             ----CCceeeEEEEECCCC-eEEEEEecCCCCCC-CHHHHHHHHHHhhhhh
Confidence                023468999999996 99999998766554 7899999998875443

The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric

>PRK00522 tpx lipid hydroperoxide peroxidase; Provisional

Probab=99.80  E-value=9.6e-19  Score=158.04  Aligned_cols=151  Identities=11%  Similarity=0.120  Sum_probs=124.9

Q ss_pred             CCCCCCCCCCCCcccccCccccccchhhhcccccccccCCCceechhhccCCCEEEEeecCCCCcchHHHHHHHHhccch
Q 015842          179 IQAPPVNEKVAPYSAIENISIQKLTPEYKIGMERLVKTKTPPMKALELWRESPAVLLCIRRPGCIMCRAEAHQLYAKKPI  258 (399)
Q Consensus       179 ~~~a~~~~~~apl~~L~~i~l~~l~~~~~~g~~~~v~~~G~~VsLsdL~~~~pvVLvFyRg~gCP~Cr~el~~L~e~~pe  258 (399)
                      +..++.+|+.+|.|.|++.                   +|+.++++++ +++++||.||+.+|||.|+.++.+|++.+++
T Consensus        14 ~~~~~~~G~~~P~f~l~~~-------------------~g~~v~l~~~-~Gk~vvl~f~~s~~cp~C~~e~~~l~~~~~~   73 (167)
T PRK00522         14 AGSLPQVGDKAPDFTLVAN-------------------DLSDVSLADF-AGKRKVLNIFPSIDTGVCATSVRKFNQEAAE   73 (167)
T ss_pred             eCCCCCCCCCCCCeEEEcC-------------------CCcEEehHHh-CCCEEEEEEEcCCCCCccHHHHHHHHHHHHH
Confidence            3557788999998877664                   4899999996 6779999999999999999999999999988


Q ss_pred             hhhcCCeEEEEecCChhhHHhhhcC-CCCC-ceeEec-cchHHHHHhCCCcccccccccccccCHHHHHHHHHHHhcCCc
Q 015842          259 FDALGIQLFAVLHEYIESEVKDFWP-RYWG-GVVVYD-QGMEFFKALGGGKLLKDKFLSGFLLNPRAIANYKRARTLGVE  335 (399)
Q Consensus       259 f~alGV~LVaIspE~~e~~ik~F~~-~~l~-f~VLsD-p~r~lYkaLGl~r~~r~s~lsgfl~~P~v~~~~~rA~~~G~~  335 (399)
                      ++  |+++|+|+.+.+.. +++|.+ ..++ +++++| +++.+.++||+..            .|.              
T Consensus        74 ~~--~~~vv~vs~D~~~~-~~~f~~~~~~~~~~~lsD~~~~~~~~~~gv~~------------~~~--------------  124 (167)
T PRK00522         74 LD--NTVVLCISADLPFA-QKRFCGAEGLENVITLSDFRDHSFGKAYGVAI------------AEG--------------  124 (167)
T ss_pred             cC--CcEEEEEeCCCHHH-HHHHHHhCCCCCceEeecCCccHHHHHhCCee------------ccc--------------
Confidence            83  99999999988764 678885 5566 799999 5679999999841            010              


Q ss_pred             cccCCCCcccceEEEEecCCCcEEEEEecCCCCCCCCHHHHHHHHHh
Q 015842          336 QNFKGEGEIKGGLFIVGRGRSGIAYQFIERNFGDWAPLAEVIEICTQ  382 (399)
Q Consensus       336 gn~~GD~~qLGGtFVId~gGg~I~yah~d~d~gDrad~eeVLaAl~~  382 (399)
                         ...++..+++||||++| +|+|.|+..+..+.++++++|+++++
T Consensus       125 ---~~~g~~~r~tfvId~~G-~I~~~~~~~~~~~~~~~~~~l~~l~~  167 (167)
T PRK00522        125 ---PLKGLLARAVFVLDENN-KVVYSELVPEITNEPDYDAALAALKA  167 (167)
T ss_pred             ---ccCCceeeEEEEECCCC-eEEEEEECCCcCCCCCHHHHHHHhhC
Confidence               01234568999999996 99999999999999999999999863

>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE

Probab=99.80  E-value=7.2e-19  Score=152.67  Aligned_cols=143  Identities=17%  Similarity=0.182  Sum_probs=119.2

Q ss_pred             CCCCCCCcccccCccccccchhhhcccccccccCCCceechhhccCCCEEEEeecCCCCcchHHHHHHHHhccchhhhcC
Q 015842          184 VNEKVAPYSAIENISIQKLTPEYKIGMERLVKTKTPPMKALELWRESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALG  263 (399)
Q Consensus       184 ~~~~~apl~~L~~i~l~~l~~~~~~g~~~~v~~~G~~VsLsdL~~~~pvVLvFyRg~gCP~Cr~el~~L~e~~pef~alG  263 (399)
                      ++|+.+|.+.+.+.                   +|+.++++++..++++||.|+|..|||.|..++.+|+++++++.+.|
T Consensus         2 ~~G~~~p~~~l~~~-------------------~g~~v~l~~~~g~k~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~   62 (149)
T cd03018           2 EVGDKAPDFELPDQ-------------------NGQEVRLSEFRGRKPVVLVFFPLAFTPVCTKELCALRDSLELFEAAG   62 (149)
T ss_pred             CCCCcCCCcEecCC-------------------CCCEEeHHHHcCCCeEEEEEeCCCCCccHHHHHHHHHHHHHHHHhCC
Confidence            56888886655544                   48999999985558999999999999999999999999999999999


Q ss_pred             CeEEEEecCChhhHHhhhcC-CCCCceeEeccc--hHHHHHhCCCcccccccccccccCHHHHHHHHHHHhcCCccccCC
Q 015842          264 IQLFAVLHEYIESEVKDFWP-RYWGGVVVYDQG--MEFFKALGGGKLLKDKFLSGFLLNPRAIANYKRARTLGVEQNFKG  340 (399)
Q Consensus       264 V~LVaIspE~~e~~ik~F~~-~~l~f~VLsDp~--r~lYkaLGl~r~~r~s~lsgfl~~P~v~~~~~rA~~~G~~gn~~G  340 (399)
                      +++|+|+.+.++. ++.|.+ ..++|++++|++  +++++.||+..           . +.                   
T Consensus        63 v~vi~vs~d~~~~-~~~~~~~~~~~~~~~~D~~~~~~~~~~~g~~~-----------~-~~-------------------  110 (149)
T cd03018          63 AEVLGISVDSPFS-LRAWAEENGLTFPLLSDFWPHGEVAKAYGVFD-----------E-DL-------------------  110 (149)
T ss_pred             CEEEEecCCCHHH-HHHHHHhcCCCceEecCCCchhHHHHHhCCcc-----------c-cC-------------------
Confidence            9999999988765 788875 678999999988  99999998851           0 00                   


Q ss_pred             CCcccceEEEEecCCCcEEEEEecCC--CCCCCCHHHHHHH
Q 015842          341 EGEIKGGLFIVGRGRSGIAYQFIERN--FGDWAPLAEVIEI  379 (399)
Q Consensus       341 D~~qLGGtFVId~gGg~I~yah~d~d--~gDrad~eeVLaA  379 (399)
                       +...|.+||||++| +|+|.|...+  ..+.+++.++|+|
T Consensus       111 -~~~~~~~~lid~~G-~v~~~~~~~~~~~~~~~~~~~~~~~  149 (149)
T cd03018         111 -GVAERAVFVIDRDG-IIRYAWVSDDGEPRDLPDYDEALDA  149 (149)
T ss_pred             -CCccceEEEECCCC-EEEEEEecCCcccccchhHHHHhhC
Confidence             12356899999996 9999999999  7888888887764

AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.

>PF13911 AhpC-TSA_2: AhpC/TSA antioxidant enzyme

Probab=99.80  E-value=2.7e-19  Score=151.47  Aligned_cols=109  Identities=28%  Similarity=0.421  Sum_probs=88.7

Q ss_pred             HHHhccchhhhcCCeEEEEecCChhhHHhhhcC-CCCCceeEeccchHHHHHhCCCcccccccccccccCHH---HHHH-
Q 015842          251 QLYAKKPIFDALGIQLFAVLHEYIESEVKDFWP-RYWGGVVVYDQGMEFFKALGGGKLLKDKFLSGFLLNPR---AIAN-  325 (399)
Q Consensus       251 ~L~e~~pef~alGV~LVaIspE~~e~~ik~F~~-~~l~f~VLsDp~r~lYkaLGl~r~~r~s~lsgfl~~P~---v~~~-  325 (399)
                      +|++.+|+|+++||+||+|++++++. ++.|++ .+|||+||+||++++|++||+.+.....+     ..+.   .+.. 
T Consensus         1 ~L~~~~~~l~~~gv~lv~I~~g~~~~-~~~f~~~~~~p~~ly~D~~~~lY~~lg~~~~~~~~~-----~~~~~~~~~~~~   74 (115)
T PF13911_consen    1 QLSRRKPELEAAGVKLVVIGCGSPEG-IEKFCELTGFPFPLYVDPERKLYKALGLKRGLKWSL-----LPPALWSGLSNI   74 (115)
T ss_pred             ChhHhHHHHHHcCCeEEEEEcCCHHH-HHHHHhccCCCCcEEEeCcHHHHHHhCCccccccCC-----CchHHHHHHHHH
Confidence            47788999999999999999999965 899995 88999999999999999999986333322     2222   2332 


Q ss_pred             HHHHHhcCCcccc-CCCCcccceEEEEecCCCcEEEEEecCC
Q 015842          326 YKRARTLGVEQNF-KGEGEIKGGLFIVGRGRSGIAYQFIERN  366 (399)
Q Consensus       326 ~~rA~~~G~~gn~-~GD~~qLGGtFVId~gGg~I~yah~d~d  366 (399)
                      +.+++..++.++. .|+.+|+||+||||++| +|+|+|++++
T Consensus        75 ~~~~~~~~~~~~~~~g~~~q~GG~fv~d~~g-~v~~~hr~~~  115 (115)
T PF13911_consen   75 VQSAKNGGIPGNKDQGDGWQLGGTFVFDPGG-KVLYEHRDRH  115 (115)
T ss_pred             HHHHHHcCCCCcccCCCceecCeEEEEcCCC-eEEEEEecCC
Confidence            3445555788888 99999999999999996 9999999975

>cd03013 PRX5_like Peroxiredoxin (PRX) family, PRX5-like subfamily; members are similar to the human protein, PRX5, a homodimeric TRX peroxidase, widely expressed in tissues and found cellularly in mitochondria, peroxisomes and the cytosol

Probab=99.79  E-value=7.3e-19  Score=157.50  Aligned_cols=139  Identities=19%  Similarity=0.152  Sum_probs=112.7

Q ss_pred             CCCCCCcccccCccccccchhhhcccccccccCCCceechhhccCCCEEEEeecCCCCcchHHH-HHHHHhccchhhhcC
Q 015842          185 NEKVAPYSAIENISIQKLTPEYKIGMERLVKTKTPPMKALELWRESPAVLLCIRRPGCIMCRAE-AHQLYAKKPIFDALG  263 (399)
Q Consensus       185 ~~~~apl~~L~~i~l~~l~~~~~~g~~~~v~~~G~~VsLsdL~~~~pvVLvFyRg~gCP~Cr~e-l~~L~e~~pef~alG  263 (399)
                      +|+++|.|.|++..                ..+|++|+|+++++++++||+||++.|||.|+.| +.+|++.+++|+++|
T Consensus         1 vG~~aPdF~l~~~~----------------~~~g~~v~L~~~~~gk~vvl~fyP~~~tp~Ct~e~~~~~~~~~~~f~~~g   64 (155)
T cd03013           1 VGDKLPNVTLFEYV----------------PGPPNPVNLSELFKGKKVVIFGVPGAFTPTCSAQHLPGYVENADELKAKG   64 (155)
T ss_pred             CCCcCCCeEeeeec----------------cCCCceeeHHHHhCCCcEEEEEeCCCCCCCCchhHHHHHHHhHHHHHHCC
Confidence            58899988887651                1148899999987888999999999999999999 999999999999999


Q ss_pred             C-eEEEEecCChhhHHhhhcC-CCC--CceeEeccchHHHHHhCCCcccccccccccccCHHHHHHHHHHHhcCCccccC
Q 015842          264 I-QLFAVLHEYIESEVKDFWP-RYW--GGVVVYDQGMEFFKALGGGKLLKDKFLSGFLLNPRAIANYKRARTLGVEQNFK  339 (399)
Q Consensus       264 V-~LVaIspE~~e~~ik~F~~-~~l--~f~VLsDp~r~lYkaLGl~r~~r~s~lsgfl~~P~v~~~~~rA~~~G~~gn~~  339 (399)
                      + .+++||.+++.. .+.|.+ ..+  +|++++|+++++.++||+..             +...        .|.     
T Consensus        65 ~~~V~~iS~D~~~~-~~~~~~~~~~~~~f~lLsD~~~~~~~~ygv~~-------------~~~~--------~~~-----  117 (155)
T cd03013          65 VDEVICVSVNDPFV-MKAWGKALGAKDKIRFLADGNGEFTKALGLTL-------------DLSA--------AGG-----  117 (155)
T ss_pred             CCEEEEEECCCHHH-HHHHHHhhCCCCcEEEEECCCHHHHHHcCCCc-------------cccc--------cCC-----
Confidence            9 599999999875 788885 555  89999999999999999952             0000        010     


Q ss_pred             CCCcccceEEEEecCCCcEEEEEecCCCCC
Q 015842          340 GEGEIKGGLFIVGRGRSGIAYQFIERNFGD  369 (399)
Q Consensus       340 GD~~qLGGtFVId~gGg~I~yah~d~d~gD  369 (399)
                       ..+...++|||| +| +|+|.|+..+..+
T Consensus       118 -~~~~~R~~fiId-~g-~I~~~~~~~~~~~  144 (155)
T cd03013         118 -GIRSKRYALIVD-DG-KVKYLFVEEDPGD  144 (155)
T ss_pred             -cceeeeEEEEEC-CC-EEEEEEEecCCCC
Confidence             123467999999 55 9999999998744

The cellular location of PRX5 suggests that it may have an important antioxidant role in organelles that are major sources of reactive oxygen species (ROS), as well as a role in the control of signal transduction. PRX5 has been shown to reduce hydrogen peroxide, alkyl hydroperoxides and peroxynitrite. As with all other PRXs, the N-terminal peroxidatic cysteine of PRX5 is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Human PRX5 is able to resolve this intermediate by forming an intramolecular disulfide bond with its C-terminal cysteine (the resolving cysteine), which can then be reduced by TRX, just like an atypical 2-cys PRX. This resolving cysteine, however, is not conserved in other members of the subfamily. In such cases

>PRK13599 putative peroxiredoxin; Provisional

Probab=99.79  E-value=1.4e-18  Score=164.11  Aligned_cols=150  Identities=15%  Similarity=0.062  Sum_probs=120.5

Q ss_pred             CCCCCCCcccccCccccccchhhhcccccccccCCCceechhhccCCCEEEEeecCCCCcchHHHHHHHHhccchhhhcC
Q 015842          184 VNEKVAPYSAIENISIQKLTPEYKIGMERLVKTKTPPMKALELWRESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALG  263 (399)
Q Consensus       184 ~~~~~apl~~L~~i~l~~l~~~~~~g~~~~v~~~G~~VsLsdL~~~~pvVLvFyRg~gCP~Cr~el~~L~e~~pef~alG  263 (399)
                      ..|+.+|.|.+++.                   +|+.+.++++ +++++||+||++.|||.|+.|+.+|++.+++|++.|
T Consensus         3 ~~Gd~aPdF~l~t~-------------------~G~~~~~~~~-~Gk~vVL~~~pa~~tpvCt~El~~l~~~~~~f~~~g   62 (215)
T PRK13599          3 LLGEKFPSMEVVTT-------------------QGVKRLPEDY-AGKWFVLFSHPADFTPVCTTEFVEFARKANDFKELN   62 (215)
T ss_pred             CCCCCCCCCEeECC-------------------CCcEecHHHH-CCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCC
Confidence            67899997766544                   3777666665 667889999999999999999999999999999999


Q ss_pred             CeEEEEecCChhhHHhhhc-------CCCCCceeEeccchHHHHHhCCCcccccccccccccCHHHHHHHHHHHhcCCcc
Q 015842          264 IQLFAVLHEYIESEVKDFW-------PRYWGGVVVYDQGMEFFKALGGGKLLKDKFLSGFLLNPRAIANYKRARTLGVEQ  336 (399)
Q Consensus       264 V~LVaIspE~~e~~ik~F~-------~~~l~f~VLsDp~r~lYkaLGl~r~~r~s~lsgfl~~P~v~~~~~rA~~~G~~g  336 (399)
                      ++||+||.++... .+.|.       ...++|+|++|+++.+.++||+..             +.            .  
T Consensus        63 v~vigIS~D~~~~-~~~w~~~i~~~~~~~i~fPil~D~~~~va~~yg~~~-------------~~------------~--  114 (215)
T PRK13599         63 TELIGLSVDQVFS-HIKWVEWIKDNTNIAIPFPVIADDLGKVSNQLGMIH-------------PG------------K--  114 (215)
T ss_pred             CEEEEEeCCCHHH-HHHHHHhHHHhcCCCCceeEEECCCchHHHHcCCCc-------------cC------------C--
Confidence            9999999998754 44443       136899999999999999999841             11            0  


Q ss_pred             ccCCCCcccceEEEEecCCCcEEEEEecCCCCCCCCHHHHHHHHHhhhhhh
Q 015842          337 NFKGEGEIKGGLFIVGRGRSGIAYQFIERNFGDWAPLAEVIEICTQLQDQQ  387 (399)
Q Consensus       337 n~~GD~~qLGGtFVId~gGg~I~yah~d~d~gDrad~eeVLaAl~~l~~~~  387 (399)
                         | ....|++||||++| +|++.++.+....+ ++++||+++++++...
T Consensus       115 ---~-~~~~R~tfIID~dG-~Ir~~~~~p~~~gr-~~~eilr~l~~lq~~~  159 (215)
T PRK13599        115 ---G-TNTVRAVFIVDDKG-TIRLIMYYPQEVGR-NVDEILRALKALQTAD  159 (215)
T ss_pred             ---C-CceeeEEEEECCCC-EEEEEEEcCCCCCC-CHHHHHHHHHHhhhhh
Confidence               1 12479999999996 99999986655555 8999999999986543

>PRK13189 peroxiredoxin; Provisional

Probab=99.79  E-value=1.8e-18  Score=163.98  Aligned_cols=151  Identities=16%  Similarity=0.126  Sum_probs=121.8

Q ss_pred             CCCCCCCCcccccCccccccchhhhcccccccccCCCceechhhccCCCEEEEeecCCCCcchHHHHHHHHhccchhhhc
Q 015842          183 PVNEKVAPYSAIENISIQKLTPEYKIGMERLVKTKTPPMKALELWRESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDAL  262 (399)
Q Consensus       183 ~~~~~~apl~~L~~i~l~~l~~~~~~g~~~~v~~~G~~VsLsdL~~~~pvVLvFyRg~gCP~Cr~el~~L~e~~pef~al  262 (399)
                      +.+|+.+|.|.+++.                   .| .+++.+.++++++||+||+..|||.|..|+.+|++.+++|++.
T Consensus         9 ~~vG~~aPdF~~~~~-------------------~g-~~~l~d~~~Gk~vvL~f~pa~fcpvC~tEl~~l~~~~~ef~~~   68 (222)
T PRK13189          9 PLIGDKFPEFEVKTT-------------------HG-PIKLPDDYKGKWFVLFSHPADFTPVCTTEFVAFQKRYDEFREL   68 (222)
T ss_pred             ccCCCcCCCcEeEcC-------------------CC-CEeeHHHhCCCeEEEEEeCCCCCCCCHHHHHHHHHHHHHHHHc
Confidence            468999997777654                   25 4778887777789999999999999999999999999999999


Q ss_pred             CCeEEEEecCChhhHHhhhcC-------CCCCceeEeccchHHHHHhCCCcccccccccccccCHHHHHHHHHHHhcCCc
Q 015842          263 GIQLFAVLHEYIESEVKDFWP-------RYWGGVVVYDQGMEFFKALGGGKLLKDKFLSGFLLNPRAIANYKRARTLGVE  335 (399)
Q Consensus       263 GV~LVaIspE~~e~~ik~F~~-------~~l~f~VLsDp~r~lYkaLGl~r~~r~s~lsgfl~~P~v~~~~~rA~~~G~~  335 (399)
                      |++||+||.++... ...|.+       ..++|++++|+++.+.++||+..             +.              
T Consensus        69 ~v~VigvS~D~~~~-h~aw~~~~~~~~g~~i~fPllsD~~~~ia~~ygv~~-------------~~--------------  120 (222)
T PRK13189         69 NTELIGLSIDQVFS-HIKWVEWIKEKLGVEIEFPIIADDRGEIAKKLGMIS-------------PG--------------  120 (222)
T ss_pred             CCEEEEEECCCHHH-HHHHHHhHHHhcCcCcceeEEEcCccHHHHHhCCCc-------------cc--------------
Confidence            99999999988754 444432       24799999999999999999841             10              


Q ss_pred             cccCCCCcccceEEEEecCCCcEEEEEecCCCCCCCCHHHHHHHHHhhhhhh
Q 015842          336 QNFKGEGEIKGGLFIVGRGRSGIAYQFIERNFGDWAPLAEVIEICTQLQDQQ  387 (399)
Q Consensus       336 gn~~GD~~qLGGtFVId~gGg~I~yah~d~d~gDrad~eeVLaAl~~l~~~~  387 (399)
                          +.+..+|++||||++| +|++.++......+ +.+++|+++++++...
T Consensus       121 ----~~~~~~r~tfIID~~G-~Ir~~~~~~~~~gr-~~~eilr~l~alq~~~  166 (222)
T PRK13189        121 ----KGTNTVRAVFIIDPKG-IIRAILYYPQEVGR-NMDEILRLVKALQTSD  166 (222)
T ss_pred             ----cCCCceeEEEEECCCC-eEEEEEecCCCCCC-CHHHHHHHHHHhhhHh
Confidence                0012478999999996 99999988766666 7899999999886543

>cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx)

Probab=99.78  E-value=2.4e-18  Score=149.22  Aligned_cols=140  Identities=11%  Similarity=0.094  Sum_probs=116.1

Q ss_pred             CCCCCCCcccccCccccccchhhhcccccccccCCCceechhhccCCCEEEEeecCCCCcchHHHHHHHHhccchhhhcC
Q 015842          184 VNEKVAPYSAIENISIQKLTPEYKIGMERLVKTKTPPMKALELWRESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALG  263 (399)
Q Consensus       184 ~~~~~apl~~L~~i~l~~l~~~~~~g~~~~v~~~G~~VsLsdL~~~~pvVLvFyRg~gCP~Cr~el~~L~e~~pef~alG  263 (399)
                      ++|+.+|.|.|++.                   +|+.++++++ +++++||.|++..|||.|+.++..|++.+.+++  |
T Consensus         1 ~~G~~aP~f~l~~~-------------------~g~~~~l~~~-~gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~~--~   58 (143)
T cd03014           1 KVGDKAPDFTLVTS-------------------DLSEVSLADF-AGKVKVISVFPSIDTPVCATQTKRFNKEAAKLD--N   58 (143)
T ss_pred             CCCCCCCCcEEECC-------------------CCcEEeHHHh-CCCeEEEEEEcCCCCCcCHHHHHHHHHHHHhcC--C
Confidence            36888997777665                   4899999996 677999999999999999999999999988873  9


Q ss_pred             CeEEEEecCChhhHHhhhcC-CC-CCceeEeccc-hHHHHHhCCCcccccccccccccCHHHHHHHHHHHhcCCccccCC
Q 015842          264 IQLFAVLHEYIESEVKDFWP-RY-WGGVVVYDQG-MEFFKALGGGKLLKDKFLSGFLLNPRAIANYKRARTLGVEQNFKG  340 (399)
Q Consensus       264 V~LVaIspE~~e~~ik~F~~-~~-l~f~VLsDp~-r~lYkaLGl~r~~r~s~lsgfl~~P~v~~~~~rA~~~G~~gn~~G  340 (399)
                      +.+|+|+.+.... +++|.+ .. ..|++++|+. +++.++||+..             +.                   
T Consensus        59 ~~vi~Is~d~~~~-~~~~~~~~~~~~~~~l~D~~~~~~~~~~gv~~-------------~~-------------------  105 (143)
T cd03014          59 TVVLTISADLPFA-QKRWCGAEGVDNVTTLSDFRDHSFGKAYGVLI-------------KD-------------------  105 (143)
T ss_pred             CEEEEEECCCHHH-HHHHHHhcCCCCceEeecCcccHHHHHhCCee-------------cc-------------------
Confidence            9999999988654 677775 33 3789999997 99999999841             10                   


Q ss_pred             CCcccceEEEEecCCCcEEEEEecCCCCCCCCHHHHHHH
Q 015842          341 EGEIKGGLFIVGRGRSGIAYQFIERNFGDWAPLAEVIEI  379 (399)
Q Consensus       341 D~~qLGGtFVId~gGg~I~yah~d~d~gDrad~eeVLaA  379 (399)
                      .+...|++||||++| +|+|.|+..+..+.++++++|++
T Consensus       106 ~~~~~~~~~iid~~G-~I~~~~~~~~~~~~~~~~~~~~~  143 (143)
T cd03014         106 LGLLARAVFVIDENG-KVIYVELVPEITDEPDYEAALAA  143 (143)
T ss_pred             CCccceEEEEEcCCC-eEEEEEECCCcccCCCHHHHhhC
Confidence            123358999999996 99999999999999999999863

Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based

>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed

Probab=99.76  E-value=9.9e-18  Score=147.54  Aligned_cols=150  Identities=11%  Similarity=0.157  Sum_probs=120.0

Q ss_pred             CCCCCCCCCcccccCccccccchhhhcccccccccCCCceechhhccCCCEEEEeecCCCCcchHHHHHHHHhccchhhh
Q 015842          182 PPVNEKVAPYSAIENISIQKLTPEYKIGMERLVKTKTPPMKALELWRESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDA  261 (399)
Q Consensus       182 a~~~~~~apl~~L~~i~l~~l~~~~~~g~~~~v~~~G~~VsLsdL~~~~pvVLvFyRg~gCP~Cr~el~~L~e~~pef~a  261 (399)
                      ....|+.+|.+.+++.                   +|+.++++++ +++++||.|++..|||.|+.++..|.+...++.+
T Consensus         3 ~~~~g~~~p~f~l~~~-------------------~G~~~~l~~~-~gk~~ll~f~~~~~~p~C~~~~~~l~~~~~~~~~   62 (154)
T PRK09437          3 PLKAGDIAPKFSLPDQ-------------------DGEQVSLTDF-QGQRVLVYFYPKAMTPGCTVQACGLRDNMDELKK   62 (154)
T ss_pred             cCCCCCcCCCcEeeCC-------------------CCCEEeHHHh-CCCCEEEEEECCCCCCchHHHHHHHHHHHHHHHH
Confidence            4567889996666655                   4899999995 7789999999999999999999999999999999


Q ss_pred             cCCeEEEEecCChhhHHhhhcC-CCCCceeEeccchHHHHHhCCCcccccccccccccCHHHHHHHHHHHhcCCccccCC
Q 015842          262 LGIQLFAVLHEYIESEVKDFWP-RYWGGVVVYDQGMEFFKALGGGKLLKDKFLSGFLLNPRAIANYKRARTLGVEQNFKG  340 (399)
Q Consensus       262 lGV~LVaIspE~~e~~ik~F~~-~~l~f~VLsDp~r~lYkaLGl~r~~r~s~lsgfl~~P~v~~~~~rA~~~G~~gn~~G  340 (399)
                      .|+++|+|+.++.+. ++.|.+ ..++|++++|++..++++||+...            +. .        .|..  +  
T Consensus        63 ~~v~vi~Is~d~~~~-~~~~~~~~~~~~~~l~D~~~~~~~~~gv~~~------------~~-~--------~~~~--~--  116 (154)
T PRK09437         63 AGVVVLGISTDKPEK-LSRFAEKELLNFTLLSDEDHQVAEQFGVWGE------------KK-F--------MGKT--Y--  116 (154)
T ss_pred             CCCEEEEEcCCCHHH-HHHHHHHhCCCCeEEECCCchHHHHhCCCcc------------cc-c--------cccc--c--
Confidence            999999999988765 777775 678999999999999999998410            10 0        0000  0  


Q ss_pred             CCcccceEEEEecCCCcEEEEEecCCCCCCCCHHHHHHHHH
Q 015842          341 EGEIKGGLFIVGRGRSGIAYQFIERNFGDWAPLAEVIEICT  381 (399)
Q Consensus       341 D~~qLGGtFVId~gGg~I~yah~d~d~gDrad~eeVLaAl~  381 (399)
                       ....|.+||||++| +|++.|.+....++  .+++|++++
T Consensus       117 -~~~~~~~~lid~~G-~i~~~~~g~~~~~~--~~~~~~~~~  153 (154)
T PRK09437        117 -DGIHRISFLIDADG-KIEHVFDKFKTSNH--HDVVLDYLK  153 (154)
T ss_pred             -cCcceEEEEECCCC-EEEEEEcCCCcchh--HHHHHHHHh
Confidence             01246899999996 99999988766654  788888875

>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified

Probab=99.76  E-value=1e-17  Score=143.49  Aligned_cols=127  Identities=18%  Similarity=0.108  Sum_probs=107.4

Q ss_pred             CCCceechhhccCCCEEEEeecCCCCcchHHHHHHHHhccchhhhcCCeEEEEecCChhhHHhhhcC-C-CCCceeEecc
Q 015842          217 KTPPMKALELWRESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLHEYIESEVKDFWP-R-YWGGVVVYDQ  294 (399)
Q Consensus       217 ~G~~VsLsdL~~~~pvVLvFyRg~gCP~Cr~el~~L~e~~pef~alGV~LVaIspE~~e~~ik~F~~-~-~l~f~VLsDp  294 (399)
                      +|++++++++ +++++||+|++..|||+|..++..|.++++++++.|+++|+|+.++++. ++.|.+ . .++|++++|+
T Consensus        11 ~g~~~~l~~~-~gk~~ll~f~~~~~c~~C~~~~~~l~~~~~~~~~~~~~~i~is~d~~~~-~~~~~~~~~~~~~~~l~D~   88 (140)
T cd02971          11 DGGEVSLSDF-KGKWVVLFFYPKDFTPVCTTELCAFRDLAEEFAKGGAEVLGVSVDSPFS-HKAWAEKEGGLNFPLLSDP   88 (140)
T ss_pred             CCcEEehHHh-CCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHH-HHHHHhcccCCCceEEECC
Confidence            4899999998 6789999999999999999999999999999999999999999988764 777775 4 7899999999


Q ss_pred             chHHHHHhCCCcccccccccccccCHHHHHHHHHHHhcCCccccCCCCcccceEEEEecCCCcEEEEEecCCCCCCCCHH
Q 015842          295 GMEFFKALGGGKLLKDKFLSGFLLNPRAIANYKRARTLGVEQNFKGEGEIKGGLFIVGRGRSGIAYQFIERNFGDWAPLA  374 (399)
Q Consensus       295 ~r~lYkaLGl~r~~r~s~lsgfl~~P~v~~~~~rA~~~G~~gn~~GD~~qLGGtFVId~gGg~I~yah~d~d~gDrad~e  374 (399)
                      +..++++||+..            .|.                 .++....|.+||||++| +|+|.|.+.+. ++...+
T Consensus        89 ~~~~~~~~g~~~------------~~~-----------------~~~~~~~p~~~lid~~g-~i~~~~~~~~~-~~~~~~  137 (140)
T cd02971          89 DGEFAKAYGVLI------------EKS-----------------AGGGLAARATFIIDPDG-KIRYVEVEPLP-TGRNAE  137 (140)
T ss_pred             ChHHHHHcCCcc------------ccc-----------------cccCceeEEEEEECCCC-cEEEEEecCCC-CCcChH
Confidence            999999999852            011                 03445679999999996 99999999998 555554


Q ss_pred             HH
Q 015842          375 EV  376 (399)
Q Consensus       375 eV  376 (399)
                      .+
T Consensus       138 ~~  139 (140)
T cd02971         138 EL  139 (140)
T ss_pred             hh
Confidence            43

PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a

>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides

Probab=99.75  E-value=1.8e-17  Score=142.25  Aligned_cols=127  Identities=20%  Similarity=0.154  Sum_probs=105.4

Q ss_pred             CCCceechhhccCCCEEEEeecCCCCcchHHHHHHHHhccchhhhcCCeEEEEecCChhhHHhhhcC-CCCCceeEeccc
Q 015842          217 KTPPMKALELWRESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLHEYIESEVKDFWP-RYWGGVVVYDQG  295 (399)
Q Consensus       217 ~G~~VsLsdL~~~~pvVLvFyRg~gCP~Cr~el~~L~e~~pef~alGV~LVaIspE~~e~~ik~F~~-~~l~f~VLsDp~  295 (399)
                      +|+.++++++ +++++||.|++..|||.|..++.+|++.++++++.|+++|+|+.++++. +++|.+ ..++|++++|++
T Consensus        12 ~g~~~~l~~~-~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vv~is~d~~~~-~~~~~~~~~~~~~~l~D~~   89 (140)
T cd03017          12 DGETVSLSDL-RGKPVVLYFYPKDDTPGCTKEACDFRDLYEEFKALGAVVIGVSPDSVES-HAKFAEKYGLPFPLLSDPD   89 (140)
T ss_pred             CCCEEeHHHh-CCCcEEEEEeCCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCCCHHH-HHHHHHHhCCCceEEECCc
Confidence            4999999997 5789999999999999999999999999999999999999999988865 788875 678999999999


Q ss_pred             hHHHHHhCCCcccccccccccccCHHHHHHHHHHHhcCCccccCCCCcccceEEEEecCCCcEEEEEecCCCCCCCCHHH
Q 015842          296 MEFFKALGGGKLLKDKFLSGFLLNPRAIANYKRARTLGVEQNFKGEGEIKGGLFIVGRGRSGIAYQFIERNFGDWAPLAE  375 (399)
Q Consensus       296 r~lYkaLGl~r~~r~s~lsgfl~~P~v~~~~~rA~~~G~~gn~~GD~~qLGGtFVId~gGg~I~yah~d~d~gDrad~ee  375 (399)
                      +.++++||+..          .. .                  .|.....|.+||||++| +|++.|.+...+  -++++
T Consensus        90 ~~~~~~~gv~~----------~~-~------------------~~~~~~~p~~~lid~~G-~v~~~~~g~~~~--~~~~~  137 (140)
T cd03017          90 GKLAKAYGVWG----------EK-K------------------KKYMGIERSTFLIDPDG-KIVKVWRKVKPK--GHAEE  137 (140)
T ss_pred             cHHHHHhCCcc----------cc-c------------------cccCCcceeEEEECCCC-EEEEEEecCCcc--chHHH
Confidence            99999999852          00 0                  12334568999999996 999999877643  34455


Q ss_pred             HH
Q 015842          376 VI  377 (399)
Q Consensus       376 VL  377 (399)
                      +|
T Consensus       138 ~~  139 (140)
T cd03017         138 VL  139 (140)
T ss_pred             Hh
Confidence            54

The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w

>PTZ00253 tryparedoxin peroxidase; Provisional

Probab=99.72  E-value=1.2e-16  Score=148.20  Aligned_cols=154  Identities=13%  Similarity=0.065  Sum_probs=122.0

Q ss_pred             CCCCCCCCCcccccCccccccchhhhcccccccccCCCceechhhccCCCEEEEeecCCCCcchHHHHHHHHhccchhhh
Q 015842          182 PPVNEKVAPYSAIENISIQKLTPEYKIGMERLVKTKTPPMKALELWRESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDA  261 (399)
Q Consensus       182 a~~~~~~apl~~L~~i~l~~l~~~~~~g~~~~v~~~G~~VsLsdL~~~~pvVLvFyRg~gCP~Cr~el~~L~e~~pef~a  261 (399)
                      +...|+.+|.|.+++. +.              +.+|++++|+++ +++++||+|++..|||.|..++.+|++.+.+|++
T Consensus         5 ~~~~G~~aPdF~~~~~-~~--------------~~~~~~v~l~d~-~Gk~~lL~F~p~~~~~~C~~e~~~l~~~~~~f~~   68 (199)
T PTZ00253          5 DAKINHPAPSFEEVAL-MP--------------NGSFKKISLSSY-KGKWVVLFFYPLDFTFVCPTEIIQFSDSVKRFNE   68 (199)
T ss_pred             ccccCCcCCCCEeecc-cc--------------CCCCcEEeHHHH-CCCEEEEEEEcCCCCCcCHHHHHHHHHHHHHHHH
Confidence            3568999997766543 11              124789999996 6679999999999999999999999999999999


Q ss_pred             cCCeEEEEecCChhhHHhhhc--C------CCCCceeEeccchHHHHHhCCCcccccccccccccCHHHHHHHHHHHhcC
Q 015842          262 LGIQLFAVLHEYIESEVKDFW--P------RYWGGVVVYDQGMEFFKALGGGKLLKDKFLSGFLLNPRAIANYKRARTLG  333 (399)
Q Consensus       262 lGV~LVaIspE~~e~~ik~F~--~------~~l~f~VLsDp~r~lYkaLGl~r~~r~s~lsgfl~~P~v~~~~~rA~~~G  333 (399)
                      .|+++|+|+.++... ...|.  .      +.++|++++|+++++.++||+..             +             
T Consensus        69 ~g~~vv~IS~d~~~~-~~~~~~~~~~~~~~~~~~fpll~D~~~~ia~~ygv~~-------------~-------------  121 (199)
T PTZ00253         69 LNCEVLACSMDSEYA-HLQWTLQERKKGGLGTMAIPMLADKTKSIARSYGVLE-------------E-------------  121 (199)
T ss_pred             cCCEEEEEeCCCHHH-HHHHHhChHhhCCccccccceEECcHhHHHHHcCCcc-------------c-------------
Confidence            999999999987754 33332  1      14799999999999999999831             0             


Q ss_pred             CccccCCCCcccceEEEEecCCCcEEEEEecCCCCCCCCHHHHHHHHHhhhhh
Q 015842          334 VEQNFKGEGEIKGGLFIVGRGRSGIAYQFIERNFGDWAPLAEVIEICTQLQDQ  386 (399)
Q Consensus       334 ~~gn~~GD~~qLGGtFVId~gGg~I~yah~d~d~gDrad~eeVLaAl~~l~~~  386 (399)
                            .++...|++||||++| +|++.+++... ...+++++|++++.++..
T Consensus       122 ------~~g~~~r~~fiID~~G-~i~~~~~~~~~-~~r~~~e~l~~l~a~~~~  166 (199)
T PTZ00253        122 ------EQGVAYRGLFIIDPKG-MLRQITVNDMP-VGRNVEEVLRLLEAFQFV  166 (199)
T ss_pred             ------CCCceEEEEEEECCCC-EEEEEEecCCC-CCCCHHHHHHHHHhhhhH
Confidence                  0123458999999996 89999988655 445899999999988753

>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins

Probab=99.71  E-value=7.8e-17  Score=139.94  Aligned_cols=145  Identities=18%  Similarity=0.245  Sum_probs=115.2

Q ss_pred             CCCCCCCcccccCccccccchhhhcccccccccCCCceechhhccCCCEEEEeecCCCCcchHHHHHHHHhccchhhhcC
Q 015842          184 VNEKVAPYSAIENISIQKLTPEYKIGMERLVKTKTPPMKALELWRESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALG  263 (399)
Q Consensus       184 ~~~~~apl~~L~~i~l~~l~~~~~~g~~~~v~~~G~~VsLsdL~~~~pvVLvFyRg~gCP~Cr~el~~L~e~~pef~alG  263 (399)
                      ++|+.+|.+.+++.                 ..+|+++++++ ++++++||.|+...|||.|+.++..|.++...+...|
T Consensus         1 k~G~~~P~~~~~~~-----------------~~~g~~~~l~~-~~gk~~vv~f~~~~~Cp~C~~~~p~l~~l~~~~~~~~   62 (146)
T PF08534_consen    1 KVGDKAPDFSLKDL-----------------DLDGKPVSLSD-FKGKPVVVNFWASAWCPPCRKELPYLNELQEKYKDKG   62 (146)
T ss_dssp             STTSB--CCEEEEE-----------------ETTSEEEEGGG-GTTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTT
T ss_pred             CCCCCCCCeEEEee-----------------cCCCCEecHHH-hCCCeEEEEEEccCCCCcchhhhhhHHhhhhhhccCc
Confidence            57889995555442                 12599999999 7888999999999999999999999999988889999


Q ss_pred             CeEEEEecCChhhHHhhhcC-CCCCceeEeccchHHHHHhCCCcccccccccccccCHHHHHHHHHHHhcCCccccCCCC
Q 015842          264 IQLFAVLHEYIESEVKDFWP-RYWGGVVVYDQGMEFFKALGGGKLLKDKFLSGFLLNPRAIANYKRARTLGVEQNFKGEG  342 (399)
Q Consensus       264 V~LVaIspE~~e~~ik~F~~-~~l~f~VLsDp~r~lYkaLGl~r~~r~s~lsgfl~~P~v~~~~~rA~~~G~~gn~~GD~  342 (399)
                      +.+|+|+.+.... +.+|.+ ...+|+++.|++..+.++||+.-          .. +                  .+.+
T Consensus        63 v~~v~v~~~~~~~-~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~----------~~-~------------------~~~~  112 (146)
T PF08534_consen   63 VDVVGVSSDDDPP-VREFLKKYGINFPVLSDPDGALAKALGVTI----------ME-D------------------PGNG  112 (146)
T ss_dssp             CEEEEEEESSSHH-HHHHHHHTTTTSEEEEETTSHHHHHTTCEE----------EC-C------------------TTTT
T ss_pred             eEEEEecccCCHH-HHHHHHhhCCCceEEechHHHHHHHhCCcc----------cc-c------------------cccC
Confidence            9999999877665 777775 77899999999999999999741          00 0                  0122


Q ss_pred             cccceEEEEecCCCcEEEEEecCCCCCCCCHHHHH
Q 015842          343 EIKGGLFIVGRGRSGIAYQFIERNFGDWAPLAEVI  377 (399)
Q Consensus       343 ~qLGGtFVId~gGg~I~yah~d~d~gDrad~eeVL  377 (399)
                      +.+|.+||||++| +|+|.|...+..+..++++||
T Consensus       113 ~~~P~~~lId~~G-~V~~~~~g~~~~~~~~~~~~l  146 (146)
T PF08534_consen  113 FGIPTTFLIDKDG-KVVYRHVGPDPDEESDLEAVL  146 (146)
T ss_dssp             SSSSEEEEEETTS-BEEEEEESSBTTSHHSHHHHH
T ss_pred             CeecEEEEEECCC-EEEEEEeCCCCCCCCChhhcC
Confidence            5689999999997 999999999883366666654

Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....

>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs

Probab=99.60  E-value=1.6e-14  Score=129.57  Aligned_cols=135  Identities=13%  Similarity=0.080  Sum_probs=106.6

Q ss_pred             CCCceechhhccCCCEEEEeecCCCCcchHHHHHHHHhccchhhhcCCeEEEEecCC--------hhhHHhhhcC-CCCC
Q 015842          217 KTPPMKALELWRESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLHEY--------IESEVKDFWP-RYWG  287 (399)
Q Consensus       217 ~G~~VsLsdL~~~~pvVLvFyRg~gCP~Cr~el~~L~e~~pef~alGV~LVaIspE~--------~e~~ik~F~~-~~l~  287 (399)
                      +|+++++.++-+++++||.|+ ..|||.|..++..|.++.+++++.++++|+|+.+.        ++ .++.|.+ ..++
T Consensus        13 ~g~~v~l~~~~~~k~~ll~f~-~t~Cp~c~~~~~~l~~l~~~~~~~~v~~v~is~d~~~~~~~d~~~-~~~~~~~~~~~~   90 (171)
T cd02969          13 DGKTYSLADFADGKALVVMFI-CNHCPYVKAIEDRLNRLAKEYGAKGVAVVAINSNDIEAYPEDSPE-NMKAKAKEHGYP   90 (171)
T ss_pred             CCCEEeHHHHhCCCEEEEEEE-CCCCccHHHHHHHHHHHHHHHhhCCeEEEEEecCccccccccCHH-HHHHHHHHCCCC
Confidence            488999999756555555555 89999999999999999999999999999999754        33 3666664 6788


Q ss_pred             ceeEeccchHHHHHhCCCcccccccccccccCHHHHHHHHHHHhcCCccccCCCCcccceEEEEecCCCcEEEEEecCCC
Q 015842          288 GVVVYDQGMEFFKALGGGKLLKDKFLSGFLLNPRAIANYKRARTLGVEQNFKGEGEIKGGLFIVGRGRSGIAYQFIERNF  367 (399)
Q Consensus       288 f~VLsDp~r~lYkaLGl~r~~r~s~lsgfl~~P~v~~~~~rA~~~G~~gn~~GD~~qLGGtFVId~gGg~I~yah~d~d~  367 (399)
                      |++++|+++.+.+.||+..                                      .|.+||||++| +|+|.+...+.
T Consensus        91 ~~~l~D~~~~~~~~~~v~~--------------------------------------~P~~~lid~~G-~v~~~~~~~~~  131 (171)
T cd02969          91 FPYLLDETQEVAKAYGAAC--------------------------------------TPDFFLFDPDG-KLVYRGRIDDS  131 (171)
T ss_pred             ceEEECCchHHHHHcCCCc--------------------------------------CCcEEEECCCC-eEEEeecccCC
Confidence            9999999999999888731                                      25799999996 89988754432


Q ss_pred             ----CCCCCHHHHHHHHHhhhhhhccccc
Q 015842          368 ----GDWAPLAEVIEICTQLQDQQRDQSE  392 (399)
Q Consensus       368 ----gDrad~eeVLaAl~~l~~~~~~~~~  392 (399)
                          ..++..+++.++++++....+..-+
T Consensus       132 ~~~~~~~~~~~~~~~~i~~~l~~~~~~~~  160 (171)
T cd02969         132 RPGNDPPVTGRDLRAALDALLAGKPVPVP  160 (171)
T ss_pred             cccccccccHHHHHHHHHHHHcCCCCCcc
Confidence                3578889999999988766554433

Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.

>COG0450 AhpC Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]

Probab=99.59  E-value=2e-14  Score=133.99  Aligned_cols=161  Identities=19%  Similarity=0.180  Sum_probs=129.2

Q ss_pred             CCCCCCCCcccccCccccccchhhhcccccccccCC---CceechhhccCCCEEEEeecCCCCcchHHHHHHHHhccchh
Q 015842          183 PVNEKVAPYSAIENISIQKLTPEYKIGMERLVKTKT---PPMKALELWRESPAVLLCIRRPGCIMCRAEAHQLYAKKPIF  259 (399)
Q Consensus       183 ~~~~~~apl~~L~~i~l~~l~~~~~~g~~~~v~~~G---~~VsLsdL~~~~pvVLvFyRg~gCP~Cr~el~~L~e~~pef  259 (399)
                      +..|+++|.|..+.+                +  .|   .+|++.+... +.+||+||.-...|.|-.|+.++++.+++|
T Consensus         3 ~lIg~~aP~F~~~a~----------------~--~~~~~~~i~l~d~~g-kw~VLff~P~DFTfVCpTEi~af~~~y~eF   63 (194)
T COG0450           3 SLIGKKAPDFTANAV----------------L--GGEIFEEITLSDYYG-KWVVLFFYPADFTFVCPTEIIAFAKRYEEF   63 (194)
T ss_pred             cccCCcCCCcEEEEE----------------e--cCceeeEEechhhcC-cEEEEEeccCCCCccCcchHHHHHhhhHHH
Confidence            457888996665443                1  24   3999999777 899999999999999999999999999999


Q ss_pred             hhcCCeEEEEecCChhhHHhhhcC-----C---CCCceeEeccchHHHHHhCCCcccccccccccccCHHHHHHHHHHHh
Q 015842          260 DALGIQLFAVLHEYIESEVKDFWP-----R---YWGGVVVYDQGMEFFKALGGGKLLKDKFLSGFLLNPRAIANYKRART  331 (399)
Q Consensus       260 ~alGV~LVaIspE~~e~~ik~F~~-----~---~l~f~VLsDp~r~lYkaLGl~r~~r~s~lsgfl~~P~v~~~~~rA~~  331 (399)
                      +++|+++++||-++... +..|..     .   .++||+++|+++++.++||+-             .|.          
T Consensus        64 ~~~g~eVigvS~Ds~fs-H~aW~~~~~~~~gi~~i~~PmiaD~~~~vs~~ygvl-------------~~~----------  119 (194)
T COG0450          64 QKRGVEVIGVSTDSVFS-HKAWKATIREAGGIGKIKFPMIADPKGEIARAYGVL-------------HPE----------  119 (194)
T ss_pred             HHcCCEEEEEecCcHHH-HHHHHhcHHhcCCccceecceEEcCchhHHHHcCCc-------------ccC----------
Confidence            99999999999988765 666662     2   389999999999999999994             122          


Q ss_pred             cCCccccCCCCcccceEEEEecCCCcEEEEEecCCCCCCCCHHHHHHHHHhhhhhh----------cccccccccc
Q 015842          332 LGVEQNFKGEGEIKGGLFIVGRGRSGIAYQFIERNFGDWAPLAEVIEICTQLQDQQ----------RDQSETIKTS  397 (399)
Q Consensus       332 ~G~~gn~~GD~~qLGGtFVId~gGg~I~yah~d~d~gDrad~eeVLaAl~~l~~~~----------~~~~~~~~~~  397 (399)
                               .+..+.|+||||++| .|++..++...-.| +++|+|+++++++-..          ++|.+||+.+
T Consensus       120 ---------~g~a~R~~FIIDp~g-~ir~~~v~~~~iGR-n~dEilR~idAlq~~~~hg~vcPanW~~G~~~i~p~  184 (194)
T COG0450         120 ---------EGLALRGTFIIDPDG-VIRHILVNPLTIGR-NVDEILRVIDALQFVAKHGEVCPANWKPGDKTIKPS  184 (194)
T ss_pred             ---------CCcceeEEEEECCCC-eEEEEEEecCCCCc-CHHHHHHHHHHHHHHHHhCCCccCCCCCCCccccCC
Confidence                     112467999999996 99999998877444 5699999999887422          6677777655

>KOG0855 consensus Alkyl hydroperoxide reductase, thiol specific antioxidant and related enzymes [Posttranslational modification, protein turnover, chaperones]

Probab=99.58  E-value=1.3e-14  Score=132.64  Aligned_cols=147  Identities=14%  Similarity=0.154  Sum_probs=123.9

Q ss_pred             CCCCCCCCCcccccCccccccchhhhcccccccccCCCceechhhccCCCEEEEeecCCCCcchHHHHHHHHhccchhhh
Q 015842          182 PPVNEKVAPYSAIENISIQKLTPEYKIGMERLVKTKTPPMKALELWRESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDA  261 (399)
Q Consensus       182 a~~~~~~apl~~L~~i~l~~l~~~~~~g~~~~v~~~G~~VsLsdL~~~~pvVLvFyRg~gCP~Cr~el~~L~e~~pef~a  261 (399)
                      -..+|+.+|+++|+|-                   +|.+|+|.++.+++|+|++||...-.|.|..|++.+++.+++|++
T Consensus        62 ~v~~Gd~iPD~tL~de-------------------dg~sisLkkit~nk~vV~f~YP~asTPGCTkQaCgFRDnY~k~kk  122 (211)
T KOG0855|consen   62 KVNKGDAIPDFTLKDE-------------------DGKSISLKKITGNKPVVLFFYPAASTPGCTKQACGFRDNYEKFKK  122 (211)
T ss_pred             eeecCCcCCCcccccC-------------------CCCeeeeeeecCCCcEEEEEeccCCCCCcccccccccccHHHHhh
Confidence            4578999997777665                   699999999999999999999999999999999999999999999


Q ss_pred             cCCeEEEEecCChhhHHhhhcC-CCCCceeEeccchHHHHHhCCCcccccccccccccCHHHHHHHHHHHhcCCccccCC
Q 015842          262 LGIQLFAVLHEYIESEVKDFWP-RYWGGVVVYDQGMEFFKALGGGKLLKDKFLSGFLLNPRAIANYKRARTLGVEQNFKG  340 (399)
Q Consensus       262 lGV~LVaIspE~~e~~ik~F~~-~~l~f~VLsDp~r~lYkaLGl~r~~r~s~lsgfl~~P~v~~~~~rA~~~G~~gn~~G  340 (399)
                      .|+.+++++-++... .+.|.. .+|||.+||||.+++.+.||..+.    .+                           
T Consensus       123 a~aeV~GlS~D~s~s-qKaF~sKqnlPYhLLSDpk~e~ik~lGa~k~----p~---------------------------  170 (211)
T KOG0855|consen  123 AGAEVIGLSGDDSAS-QKAFASKQNLPYHLLSDPKNEVIKDLGAPKD----PF---------------------------  170 (211)
T ss_pred             cCceEEeeccCchHH-HHHhhhhccCCeeeecCcchhHHHHhCCCCC----CC---------------------------
Confidence            999999999988764 788985 889999999999999999998631    11                           


Q ss_pred             CCcccceEEEEecCCCcEEEEEecCCCCCCCCHHHHHHHHH
Q 015842          341 EGEIKGGLFIVGRGRSGIAYQFIERNFGDWAPLAEVIEICT  381 (399)
Q Consensus       341 D~~qLGGtFVId~gGg~I~yah~d~d~gDrad~eeVLaAl~  381 (399)
                      .++.....||++.+|  +.--+.+..+.-...+++-++.+.
T Consensus       171 gg~~~Rsh~if~kg~--~k~~ik~~~isPevsvd~a~k~~~  209 (211)
T KOG0855|consen  171 GGLPGRSHYIFDKGG--VKQLIKNNQISPEVSVDEALKFLK  209 (211)
T ss_pred             CCcccceEEEEecCC--eEEEEEecccCccccHHHHHHHHh
Confidence            112334799999874  666777777888888888777664

>PRK03147 thiol-disulfide oxidoreductase; Provisional

Probab=99.57  E-value=4.6e-14  Score=125.41  Aligned_cols=140  Identities=17%  Similarity=0.202  Sum_probs=112.3

Q ss_pred             CCCCCCCCCCcccccCccccccchhhhcccccccccCCCceechhhccCCCEEEEeecCCCCcchHHHHHHHHhccchhh
Q 015842          181 APPVNEKVAPYSAIENISIQKLTPEYKIGMERLVKTKTPPMKALELWRESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFD  260 (399)
Q Consensus       181 ~a~~~~~~apl~~L~~i~l~~l~~~~~~g~~~~v~~~G~~VsLsdL~~~~pvVLvFyRg~gCP~Cr~el~~L~e~~pef~  260 (399)
                      .++.+|+.+|.+.+.+.                   +|+.++++++ +++++||.|+ ..|||+|+.+...|.+...++.
T Consensus        33 ~~~~~g~~~p~~~~~~~-------------------~g~~~~l~~~-~~k~~~l~f~-a~~C~~C~~~~~~l~~~~~~~~   91 (173)
T PRK03147         33 EKVQVGKEAPNFVLTDL-------------------EGKKIELKDL-KGKGVFLNFW-GTWCKPCEKEMPYMNELYPKYK   91 (173)
T ss_pred             cccCCCCCCCCcEeecC-------------------CCCEEeHHHc-CCCEEEEEEE-CCcCHHHHHHHHHHHHHHHHhh
Confidence            45678888886665554                   4899999995 6677888777 8999999999999999999999


Q ss_pred             hcCCeEEEEecCChhhHHhhhcC-CCCCceeEeccchHHHHHhCCCcccccccccccccCHHHHHHHHHHHhcCCccccC
Q 015842          261 ALGIQLFAVLHEYIESEVKDFWP-RYWGGVVVYDQGMEFFKALGGGKLLKDKFLSGFLLNPRAIANYKRARTLGVEQNFK  339 (399)
Q Consensus       261 alGV~LVaIspE~~e~~ik~F~~-~~l~f~VLsDp~r~lYkaLGl~r~~r~s~lsgfl~~P~v~~~~~rA~~~G~~gn~~  339 (399)
                      +.++++|+|+.+.....++.|.. ..++|+++.|++..+.++||+.                                  
T Consensus        92 ~~~~~vi~i~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~----------------------------------  137 (173)
T PRK03147         92 EKGVEIIAVNVDETELAVKNFVNRYGLTFPVAIDKGRQVIDAYGVG----------------------------------  137 (173)
T ss_pred             cCCeEEEEEEcCCCHHHHHHHHHHhCCCceEEECCcchHHHHcCCC----------------------------------
Confidence            98999999998766555677764 6789999999999999988773                                  


Q ss_pred             CCCcccceEEEEecCCCcEEEEEecCCCCCCCCHHHHHHHHHhhhh
Q 015842          340 GEGEIKGGLFIVGRGRSGIAYQFIERNFGDWAPLAEVIEICTQLQD  385 (399)
Q Consensus       340 GD~~qLGGtFVId~gGg~I~yah~d~d~gDrad~eeVLaAl~~l~~  385 (399)
                          ..|.+||||++| +|++.+.+..     +.+++.+.++.++|
T Consensus       138 ----~~P~~~lid~~g-~i~~~~~g~~-----~~~~l~~~l~~~~~  173 (173)
T PRK03147        138 ----PLPTTFLIDKDG-KVVKVITGEM-----TEEQLEEYLEKIKP  173 (173)
T ss_pred             ----CcCeEEEECCCC-cEEEEEeCCC-----CHHHHHHHHHHhcC
Confidence                147899999996 8998876543     45777777776653

>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain

Probab=99.54  E-value=3.3e-14  Score=121.58  Aligned_cols=106  Identities=16%  Similarity=0.163  Sum_probs=88.2

Q ss_pred             CCceechhhccCCCEEEEeecCCCCcchHHHHHHHHhccchhhhcCCeEEEEec------CChhhHHhhhcC-CCCCcee
Q 015842          218 TPPMKALELWRESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLH------EYIESEVKDFWP-RYWGGVV  290 (399)
Q Consensus       218 G~~VsLsdL~~~~pvVLvFyRg~gCP~Cr~el~~L~e~~pef~alGV~LVaIsp------E~~e~~ik~F~~-~~l~f~V  290 (399)
                      |++++++++ +++++||.|+ ..|||.|+.++..|.+++.++.+.|+.+|+|+.      ++++ .++.|.+ +.++|++
T Consensus        13 ~~~v~l~~~-~gk~vvl~F~-a~~C~~C~~~~p~l~~l~~~~~~~~~~vi~i~~~~~~~~~~~~-~~~~~~~~~~~~~p~   89 (126)
T cd03012          13 DKPLSLAQL-RGKVVLLDFW-TYCCINCLHTLPYLTDLEQKYKDDGLVVIGVHSPEFAFERDLA-NVKSAVLRYGITYPV   89 (126)
T ss_pred             CCccCHHHh-CCCEEEEEEE-CCCCccHHHHHHHHHHHHHHcCcCCeEEEEeccCccccccCHH-HHHHHHHHcCCCCCE
Confidence            689999997 6667776665 679999999999999999999999999999964      2343 3667764 7799999


Q ss_pred             EeccchHHHHHhCCCcccccccccccccCHHHHHHHHHHHhcCCccccCCCCcccceEEEEecCCCcEEEEEecC
Q 015842          291 VYDQGMEFFKALGGGKLLKDKFLSGFLLNPRAIANYKRARTLGVEQNFKGEGEIKGGLFIVGRGRSGIAYQFIER  365 (399)
Q Consensus       291 LsDp~r~lYkaLGl~r~~r~s~lsgfl~~P~v~~~~~rA~~~G~~gn~~GD~~qLGGtFVId~gGg~I~yah~d~  365 (399)
                      ++|++..++++||+..                                      .|.+||||++| +|+|.|.+.
T Consensus        90 ~~D~~~~~~~~~~v~~--------------------------------------~P~~~vid~~G-~v~~~~~G~  125 (126)
T cd03012          90 ANDNDYATWRAYGNQY--------------------------------------WPALYLIDPTG-NVRHVHFGE  125 (126)
T ss_pred             EECCchHHHHHhCCCc--------------------------------------CCeEEEECCCC-cEEEEEecC
Confidence            9999999999887630                                      37899999996 899999865

Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.

>PLN02412 probable glutathione peroxidase

Probab=99.46  E-value=1.1e-12  Score=118.67  Aligned_cols=136  Identities=9%  Similarity=0.029  Sum_probs=93.1

Q ss_pred             CCCceechhhccCCCEEEEeecCCCCcchHHHHHHHHhccchhhhcCCeEEEEec--------CChhhHHhhhc-CCCCC
Q 015842          217 KTPPMKALELWRESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLH--------EYIESEVKDFW-PRYWG  287 (399)
Q Consensus       217 ~G~~VsLsdL~~~~pvVLvFyRg~gCP~Cr~el~~L~e~~pef~alGV~LVaIsp--------E~~e~~ik~F~-~~~l~  287 (399)
                      +|+.++++++ +++++||.|+ ..|||+|+.++..|++++.+++..|+.+|+|+.        ++.+...+.|. +..++
T Consensus        18 ~G~~v~l~~~-~gk~vlv~f~-a~~C~~c~~e~~~l~~l~~~~~~~g~~vvgv~~~~~~~~~~~~~~~~~~~~~~~~~~~   95 (167)
T PLN02412         18 GGNDVSLNQY-KGKVLLIVNV-ASKCGLTDSNYKELNVLYEKYKEQGFEILAFPCNQFLGQEPGSNEEIQQTVCTRFKAE   95 (167)
T ss_pred             CCCEEeHHHh-CCCEEEEEEe-CCCCCChHHHHHHHHHHHHHHhhCCcEEEEecccccccCCCCCHHHHHHHHHHccCCC
Confidence            4999999996 5566666666 899999999999999999999999999999985        23333233343 46789


Q ss_pred             ceeEec--cch-HHHHHhCCCcccccccccccccCHHHHHHHHHHHhcCCccccCCCC-cccceEEEEecCCCcEEEEEe
Q 015842          288 GVVVYD--QGM-EFFKALGGGKLLKDKFLSGFLLNPRAIANYKRARTLGVEQNFKGEG-EIKGGLFIVGRGRSGIAYQFI  363 (399)
Q Consensus       288 f~VLsD--p~r-~lYkaLGl~r~~r~s~lsgfl~~P~v~~~~~rA~~~G~~gn~~GD~-~qLGGtFVId~gGg~I~yah~  363 (399)
                      |||++|  ++. .....|+.-+             +         ...++    .|.. ...|.+||||++| +|++.|.
T Consensus        96 fpvl~~~d~~g~~~~~~~~~~~-------------~---------~~~~~----~~~~v~~~p~tflId~~G-~vv~~~~  148 (167)
T PLN02412         96 FPIFDKVDVNGKNTAPLYKYLK-------------A---------EKGGL----FGDAIKWNFTKFLVSKEG-KVVQRYA  148 (167)
T ss_pred             CceEeEEeeCCCCCCHHHHHHH-------------h---------hCCCC----CCCCcCCCCeeEEECCCC-cEEEEEC
Confidence            999984  442 4433333210             0         00011    1111 1258899999997 8999997


Q ss_pred             cCCCCCCCCHHHHHHHHHhhhhh
Q 015842          364 ERNFGDWAPLAEVIEICTQLQDQ  386 (399)
Q Consensus       364 d~d~gDrad~eeVLaAl~~l~~~  386 (399)
                      ..     .+.+++.+.++.+.+|
T Consensus       149 g~-----~~~~~l~~~i~~~l~~  166 (167)
T PLN02412        149 PT-----TSPLKIEKDIQNLLGQ  166 (167)
T ss_pred             CC-----CCHHHHHHHHHHHHhh
Confidence            44     4567777777766543

>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD

Probab=99.44  E-value=1e-12  Score=121.11  Aligned_cols=141  Identities=13%  Similarity=0.112  Sum_probs=100.8

Q ss_pred             CCCCCCCCCCCcccccCccccccchhhhcccccccccCCCceechh-hccCCCEEEEeecCCCCcchHHHHHHHHhccch
Q 015842          180 QAPPVNEKVAPYSAIENISIQKLTPEYKIGMERLVKTKTPPMKALE-LWRESPAVLLCIRRPGCIMCRAEAHQLYAKKPI  258 (399)
Q Consensus       180 ~~a~~~~~~apl~~L~~i~l~~l~~~~~~g~~~~v~~~G~~VsLsd-L~~~~pvVLvFyRg~gCP~Cr~el~~L~e~~pe  258 (399)
                      +.++.+|+.+|.|.+++.                   +|+.+++++ ..+++|+||.|+ ..|||.|+.++..+.+..  
T Consensus        43 ~~~~~vG~~aP~f~l~d~-------------------~G~~v~l~~~~~~gk~vvl~F~-atwCp~C~~~lp~l~~~~--  100 (189)
T TIGR02661        43 DHGPDVGDAAPIFNLPDF-------------------DGEPVRIGGSIAPGRPTLLMFT-APSCPVCDKLFPIIKSIA--  100 (189)
T ss_pred             ccCCCCCCcCCCcEecCC-------------------CCCEEeccchhcCCCEEEEEEE-CCCChhHHHHHHHHHHHH--
Confidence            345688999997777665                   489999975 356667777665 899999999999998865  


Q ss_pred             hhhcCCeEEEEecCChhhHHhhhcC-CCCCceeEeccchHHHHHhCCCcccccccccccccCHHHHHHHHHHHhcCCccc
Q 015842          259 FDALGIQLFAVLHEYIESEVKDFWP-RYWGGVVVYDQGMEFFKALGGGKLLKDKFLSGFLLNPRAIANYKRARTLGVEQN  337 (399)
Q Consensus       259 f~alGV~LVaIspE~~e~~ik~F~~-~~l~f~VLsDp~r~lYkaLGl~r~~r~s~lsgfl~~P~v~~~~~rA~~~G~~gn  337 (399)
                       ++.|+++++|+.++.+. ++.|.+ +.++|+.|. .+..+.++||+.                                
T Consensus       101 -~~~~~~vv~Is~~~~~~-~~~~~~~~~~~~~~~~-~~~~i~~~y~v~--------------------------------  145 (189)
T TIGR02661       101 -RAEETDVVMISDGTPAE-HRRFLKDHELGGERYV-VSAEIGMAFQVG--------------------------------  145 (189)
T ss_pred             -HhcCCcEEEEeCCCHHH-HHHHHHhcCCCcceee-chhHHHHhccCC--------------------------------
Confidence             34588999999877664 677774 667776654 455666655542                                


Q ss_pred             cCCCCcccceEEEEecCCCcEEEEEecCCCCCCCCHHHHHHHHHhhhhhh
Q 015842          338 FKGEGEIKGGLFIVGRGRSGIAYQFIERNFGDWAPLAEVIEICTQLQDQQ  387 (399)
Q Consensus       338 ~~GD~~qLGGtFVId~gGg~I~yah~d~d~gDrad~eeVLaAl~~l~~~~  387 (399)
                            .+|.+||||++| +|++...   ...+.+++++|++++.-.+.-
T Consensus       146 ------~~P~~~lID~~G-~I~~~g~---~~~~~~le~ll~~l~~~~~~~  185 (189)
T TIGR02661       146 ------KIPYGVLLDQDG-KIRAKGL---TNTREHLESLLEADREGFASL  185 (189)
T ss_pred             ------ccceEEEECCCC-eEEEccC---CCCHHHHHHHHHHHHcCcchh
Confidence                  147889999996 8988532   233445788888876654433

This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.

>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily

Probab=99.43  E-value=1.6e-12  Score=117.69  Aligned_cols=134  Identities=16%  Similarity=0.094  Sum_probs=97.0

Q ss_pred             CCCCCCCCCcccccCccccccchhhhcccccccccCCC--ceechhhccCCCEEEEeecCCCCcchHHHHHHHHhccchh
Q 015842          182 PPVNEKVAPYSAIENISIQKLTPEYKIGMERLVKTKTP--PMKALELWRESPAVLLCIRRPGCIMCRAEAHQLYAKKPIF  259 (399)
Q Consensus       182 a~~~~~~apl~~L~~i~l~~l~~~~~~g~~~~v~~~G~--~VsLsdL~~~~pvVLvFyRg~gCP~Cr~el~~L~e~~pef  259 (399)
                      +..+|+.+|.|.|++.                   +|+  .++++++.+++++||.|+ ..|||.|+.+...|.+.    
T Consensus        33 ~~~vG~~ap~f~l~~~-------------------~G~~~~~~~~~~~~gk~vll~F~-a~wC~~C~~~~p~l~~l----   88 (173)
T TIGR00385        33 SALIGKPVPAFPLAAL-------------------REPLQAYTPEAFIQGKPVLLNVW-ASWCPPCRAEHPYLNEL----   88 (173)
T ss_pred             chhcCCCCCCcccccc-------------------CCCCcccCHHHhcCCCEEEEEEE-CCcCHHHHHHHHHHHHH----
Confidence            4567888997777665                   244  566667767777777777 89999999998887654    


Q ss_pred             hhcCCeEEEEecCChhhHHhhhcC-CCCCce-eEeccchHHHHHhCCCcccccccccccccCHHHHHHHHHHHhcCCccc
Q 015842          260 DALGIQLFAVLHEYIESEVKDFWP-RYWGGV-VVYDQGMEFFKALGGGKLLKDKFLSGFLLNPRAIANYKRARTLGVEQN  337 (399)
Q Consensus       260 ~alGV~LVaIspE~~e~~ik~F~~-~~l~f~-VLsDp~r~lYkaLGl~r~~r~s~lsgfl~~P~v~~~~~rA~~~G~~gn  337 (399)
                      .+.|+++|+|+.+........|.+ +.++|+ ++.|++..+.++||+.                                
T Consensus        89 ~~~~~~vi~V~~~~~~~~~~~~~~~~~~~f~~v~~D~~~~~~~~~~v~--------------------------------  136 (173)
T TIGR00385        89 AKDGLPIVGVDYKDQSQNALKFLKELGNPYQAILIDPNGKLGLDLGVY--------------------------------  136 (173)
T ss_pred             HHcCCEEEEEECCCChHHHHHHHHHcCCCCceEEECCCCchHHhcCCe--------------------------------
Confidence            456899999996543333556664 678887 6789999988877662                                


Q ss_pred             cCCCCcccceEEEEecCCCcEEEEEecCCCCCCCCHHHHHHHHHhh
Q 015842          338 FKGEGEIKGGLFIVGRGRSGIAYQFIERNFGDWAPLAEVIEICTQL  383 (399)
Q Consensus       338 ~~GD~~qLGGtFVId~gGg~I~yah~d~d~gDrad~eeVLaAl~~l  383 (399)
                            ..|.+|+||++| +|+|.|.+.     .+.+++.+.++.+
T Consensus       137 ------~~P~~~~id~~G-~i~~~~~G~-----~~~~~l~~~l~~~  170 (173)
T TIGR00385       137 ------GAPETFLVDGNG-VILYRHAGP-----LNNEVWTEGFLPA  170 (173)
T ss_pred             ------eCCeEEEEcCCc-eEEEEEecc-----CCHHHHHHHHHHH
Confidence                  147899999996 899998864     3455555555443

Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.

>PRK15412 thiol:disulfide interchange protein DsbE; Provisional

Probab=99.43  E-value=2e-12  Score=118.54  Aligned_cols=122  Identities=18%  Similarity=0.124  Sum_probs=92.5

Q ss_pred             CCCCCCCCcccccCccccccchhhhcccccccccCCCceechhhccCCCEEEEeecCCCCcchHHHHHHHHhccchhhhc
Q 015842          183 PVNEKVAPYSAIENISIQKLTPEYKIGMERLVKTKTPPMKALELWRESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDAL  262 (399)
Q Consensus       183 ~~~~~~apl~~L~~i~l~~l~~~~~~g~~~~v~~~G~~VsLsdL~~~~pvVLvFyRg~gCP~Cr~el~~L~e~~pef~al  262 (399)
                      ..+|+.+|.|.+++.     +            .+|+.+++.++++++++||.|+ ..|||.|+.++..|.+.    .+.
T Consensus        39 ~~~g~~~p~f~l~~~-----~------------g~g~~~~~~~~~~gk~vvv~Fw-atwC~~C~~e~p~l~~l----~~~   96 (185)
T PRK15412         39 ALIGKPVPKFRLESL-----E------------NPGQFYQADVLTQGKPVLLNVW-ATWCPTCRAEHQYLNQL----SAQ   96 (185)
T ss_pred             hhcCCCCCCcCCccC-----C------------CCCccccHHHhcCCCEEEEEEE-CCCCHHHHHHHHHHHHH----HHc
Confidence            466788886666655     2            1367777777777778888888 89999999999998764    456


Q ss_pred             CCeEEEEecCChhhHHhhhcC-CCCCce-eEeccchHHHHHhCCCcccccccccccccCHHHHHHHHHHHhcCCccccCC
Q 015842          263 GIQLFAVLHEYIESEVKDFWP-RYWGGV-VVYDQGMEFFKALGGGKLLKDKFLSGFLLNPRAIANYKRARTLGVEQNFKG  340 (399)
Q Consensus       263 GV~LVaIspE~~e~~ik~F~~-~~l~f~-VLsDp~r~lYkaLGl~r~~r~s~lsgfl~~P~v~~~~~rA~~~G~~gn~~G  340 (399)
                      |+++|+|+-+.....+++|.+ ..++|+ ++.|++..+.++||+.                                   
T Consensus        97 ~~~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv~-----------------------------------  141 (185)
T PRK15412         97 GIRVVGMNYKDDRQKAISWLKELGNPYALSLFDGDGMLGLDLGVY-----------------------------------  141 (185)
T ss_pred             CCEEEEEECCCCHHHHHHHHHHcCCCCceEEEcCCccHHHhcCCC-----------------------------------
Confidence            999999985433234677775 667888 5889998888877663                                   


Q ss_pred             CCcccceEEEEecCCCcEEEEEecC
Q 015842          341 EGEIKGGLFIVGRGRSGIAYQFIER  365 (399)
Q Consensus       341 D~~qLGGtFVId~gGg~I~yah~d~  365 (399)
                         -.|.+||||++| +|+|.|.+.
T Consensus       142 ---~~P~t~vid~~G-~i~~~~~G~  162 (185)
T PRK15412        142 ---GAPETFLIDGNG-IIRYRHAGD  162 (185)
T ss_pred             ---cCCeEEEECCCc-eEEEEEecC
Confidence               137899999996 899999875

>PTZ00056 glutathione peroxidase; Provisional

Probab=99.39  E-value=5e-12  Score=118.03  Aligned_cols=135  Identities=16%  Similarity=0.237  Sum_probs=90.6

Q ss_pred             CCCceechhhccCCCEEEEeecCCCCcchHHHHHHHHhccchhhhcCCeEEEEec--------CChhhHHhhhcC-CCCC
Q 015842          217 KTPPMKALELWRESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLH--------EYIESEVKDFWP-RYWG  287 (399)
Q Consensus       217 ~G~~VsLsdL~~~~pvVLvFyRg~gCP~Cr~el~~L~e~~pef~alGV~LVaIsp--------E~~e~~ik~F~~-~~l~  287 (399)
                      +|+.++++++ ++ ++||++|...|||+|+.++..|.+++.++.+.|+++|+|+.        ++++ .++.|.+ ..++
T Consensus        28 ~G~~vsL~~~-kG-kvvlv~fwAswC~~C~~e~p~L~~l~~~~~~~g~~vvgv~~~~~~~~e~d~~e-~~~~f~~~~~~~  104 (199)
T PTZ00056         28 EGTTVPMSSL-KN-KVLMITNSASKCGLTKKHVDQMNRLHSVFNPLGLEILAFPTSQFLNQEFPNTK-DIRKFNDKNKIK  104 (199)
T ss_pred             CCCEEeHHHh-CC-CEEEEEEECCCCCChHHHHHHHHHHHHHHhcCceEEEEecchhccCCCCCCHH-HHHHHHHHcCCC
Confidence            4999999996 54 45666678899999999999999999999999999999985        3444 3788875 6789


Q ss_pred             ceeEecc------chHHHHHhCCCcccccccccccccCHHHHHHHHHHHhcCCccccCCCCcccceEEEEecCCCcEEEE
Q 015842          288 GVVVYDQ------GMEFFKALGGGKLLKDKFLSGFLLNPRAIANYKRARTLGVEQNFKGEGEIKGGLFIVGRGRSGIAYQ  361 (399)
Q Consensus       288 f~VLsDp------~r~lYkaLGl~r~~r~s~lsgfl~~P~v~~~~~rA~~~G~~gn~~GD~~qLGGtFVId~gGg~I~ya  361 (399)
                      |++++|.      ...+|+.++-..       ..+ .              +..+...+-.+ .+.+||||++| +|++.
T Consensus       105 fpvl~d~~v~g~~~~~l~~~l~~~~-------~~~-~--------------d~~~~~~~i~~-~~~tflID~~G-~iv~~  160 (199)
T PTZ00056        105 YNFFEPIEVNGENTHELFKFLKANC-------DSM-H--------------DENGTLKAIGW-NFGKFLVNKSG-NVVAY  160 (199)
T ss_pred             ceeeeeeeccCCccCHHHHHHHHhC-------ccc-c--------------cccccCCccCC-CCEEEEECCCC-cEEEE
Confidence            9999873      445555443110       000 0              00000000001 14799999997 89887


Q ss_pred             EecCCCCCCCCHHHHHHHHHhh
Q 015842          362 FIERNFGDWAPLAEVIEICTQL  383 (399)
Q Consensus       362 h~d~d~gDrad~eeVLaAl~~l  383 (399)
                      |...     .+.+++.+.++.+
T Consensus       161 ~~g~-----~~~~~l~~~I~~l  177 (199)
T PTZ00056        161 FSPR-----TEPLELEKKIAEL  177 (199)
T ss_pred             eCCC-----CCHHHHHHHHHHH
Confidence            7543     3455665555554

>PLN02399 phospholipid hydroperoxide glutathione peroxidase

Probab=99.36  E-value=6.2e-12  Score=121.01  Aligned_cols=153  Identities=11%  Similarity=0.057  Sum_probs=105.7

Q ss_pred             CcCCCCCCCCCCCCcccccCccccccchhhhcccccccccCCCceechhhccCCCEEEEeecCCCCcchHHHHHHHHhcc
Q 015842          177 GCIQAPPVNEKVAPYSAIENISIQKLTPEYKIGMERLVKTKTPPMKALELWRESPAVLLCIRRPGCIMCRAEAHQLYAKK  256 (399)
Q Consensus       177 g~~~~a~~~~~~apl~~L~~i~l~~l~~~~~~g~~~~v~~~G~~VsLsdL~~~~pvVLvFyRg~gCP~Cr~el~~L~e~~  256 (399)
                      +++......|+.+|.+.++|.                   +|+.++++++ +++++||+|+ ..|||.|+.++.+|++++
T Consensus        67 ~~~~~~~~~g~~aPdF~l~d~-------------------~G~~vsLsd~-kGK~vvl~Fw-AswCp~c~~e~p~L~~L~  125 (236)
T PLN02399         67 FGVYARAATEKSVHDFTVKDI-------------------DGKDVALSKF-KGKVLLIVNV-ASKCGLTSSNYSELSHLY  125 (236)
T ss_pred             cccccchhcCCCCCceEEECC-------------------CCCEEeHHHh-CCCeEEEEEE-cCCCcchHHHHHHHHHHH
Confidence            344434467888887777666                   5999999996 6677888887 889999999999999999


Q ss_pred             chhhhcCCeEEEEecC--------ChhhHHhhhc--CCCCCceeEeccc--h-HHHHHhCCCcccccccccccccCHHHH
Q 015842          257 PIFDALGIQLFAVLHE--------YIESEVKDFW--PRYWGGVVVYDQG--M-EFFKALGGGKLLKDKFLSGFLLNPRAI  323 (399)
Q Consensus       257 pef~alGV~LVaIspE--------~~e~~ik~F~--~~~l~f~VLsDp~--r-~lYkaLGl~r~~r~s~lsgfl~~P~v~  323 (399)
                      .++++.|+++|+|...        +.+ ++++|.  +..++|+|+.|.+  . .....|++.+                 
T Consensus       126 ~~~~~~Gv~VIgV~~d~~~~~e~~s~~-ei~~f~~~~~g~~fPvl~~~D~~G~~~~~~y~~l~-----------------  187 (236)
T PLN02399        126 EKYKTQGFEILAFPCNQFGGQEPGSNP-EIKQFACTRFKAEFPIFDKVDVNGPSTAPVYQFLK-----------------  187 (236)
T ss_pred             HHHhcCCcEEEEEecccccccCCCCHH-HHHHHHHHhcCCCCccccccCCCcchhhHHHHHHH-----------------
Confidence            9999999999999952        333 478885  3578999996543  2 3333222100                 


Q ss_pred             HHHHHHHhcCCccccCCCC-cccceEEEEecCCCcEEEEEecCCCCCCCCHHHHHHHHHhh
Q 015842          324 ANYKRARTLGVEQNFKGEG-EIKGGLFIVGRGRSGIAYQFIERNFGDWAPLAEVIEICTQL  383 (399)
Q Consensus       324 ~~~~rA~~~G~~gn~~GD~-~qLGGtFVId~gGg~I~yah~d~d~gDrad~eeVLaAl~~l  383 (399)
                          .+ ..|+.    |+. .-.|-+||||++| +|++.|...     .+.+++.+.++.+
T Consensus       188 ----~~-~~~~~----g~~i~~~PttfLIDk~G-kVv~~~~G~-----~~~~~le~~I~~l  233 (236)
T PLN02399        188 ----SN-AGGFL----GDLIKWNFEKFLVDKNG-KVVERYPPT-----TSPFQIEKDIQKL  233 (236)
T ss_pred             ----Hh-cCCcc----CCccccCceEEEECCCC-cEEEEECCC-----CCHHHHHHHHHHH
Confidence                00 01111    211 1247899999997 899999754     2556666666655

>PTZ00256 glutathione peroxidase; Provisional

Probab=99.34  E-value=1.4e-11  Score=113.04  Aligned_cols=132  Identities=14%  Similarity=0.134  Sum_probs=88.9

Q ss_pred             CCCceechhhccCCCEEEEeecCCCCcchHHHHHHHHhccchhhhcCCeEEEEecC--------ChhhHHhhhc--CCCC
Q 015842          217 KTPPMKALELWRESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLHE--------YIESEVKDFW--PRYW  286 (399)
Q Consensus       217 ~G~~VsLsdL~~~~pvVLvFyRg~gCP~Cr~el~~L~e~~pef~alGV~LVaIspE--------~~e~~ik~F~--~~~l  286 (399)
                      +|++++++++ +++++||+|+=..|||+|+.++..|++++.+++..|+.+|+|+..        +.+ .+..|.  +..+
T Consensus        29 ~G~~vsLs~~-~Gk~vvlv~n~atwCp~C~~e~p~l~~l~~~~~~~gv~vv~vs~~~~~~~~~~~~~-~~~~f~~~~~~~  106 (183)
T PTZ00256         29 DGQLVQLSKF-KGKKAIIVVNVACKCGLTSDHYTQLVELYKQYKSQGLEILAFPCNQFMEQEPWDEP-EIKEYVQKKFNV  106 (183)
T ss_pred             CCCEEeHHHh-CCCcEEEEEEECCCCCchHHHHHHHHHHHHHHhhCCcEEEEEecccccccCCCCHH-HHHHHHHHhcCC
Confidence            4999999996 666776666568899999999999999999999999999999853        222 366674  3578


Q ss_pred             CceeEec--cc----hHHHHHhCCCcccccccccccccCHHHHHHHHHHHhcCCccccCCCCcccc---eEEEEecCCCc
Q 015842          287 GGVVVYD--QG----MEFFKALGGGKLLKDKFLSGFLLNPRAIANYKRARTLGVEQNFKGEGEIKG---GLFIVGRGRSG  357 (399)
Q Consensus       287 ~f~VLsD--p~----r~lYkaLGl~r~~r~s~lsgfl~~P~v~~~~~rA~~~G~~gn~~GD~~qLG---GtFVId~gGg~  357 (399)
                      +|++++|  ++    ..+|+-|+-..                          +.-+...|...-+|   .+||||++| +
T Consensus       107 ~fpv~~d~d~~g~~~~~~~~~l~~~~--------------------------~~~~~~~~~~~~iP~~~~tflID~~G-~  159 (183)
T PTZ00256        107 DFPLFQKIEVNGENTHEIYKYLRRNS--------------------------ELFQNNTNEARQIPWNFAKFLIDGQG-K  159 (183)
T ss_pred             CCCCceEEecCCCCCCHHHHHHHhhC--------------------------CCCcCccccCcccCcceEEEEECCCC-C
Confidence            9999976  33    34554332210                          00000011222245   589999997 8


Q ss_pred             EEEEEecCCCCCCCCHHHHHHHHHh
Q 015842          358 IAYQFIERNFGDWAPLAEVIEICTQ  382 (399)
Q Consensus       358 I~yah~d~d~gDrad~eeVLaAl~~  382 (399)
                      |++.|.+.     .+.+++.+.+..
T Consensus       160 Iv~~~~g~-----~~~~~l~~~I~~  179 (183)
T PTZ00256        160 VVKYFSPK-----VNPNEMIQDIEK  179 (183)
T ss_pred             EEEEECCC-----CCHHHHHHHHHH
Confidence            99999863     244455444443

>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold

Probab=99.33  E-value=5.8e-12  Score=108.30  Aligned_cols=119  Identities=13%  Similarity=0.080  Sum_probs=86.8

Q ss_pred             CCCceechhhccCCCEEEEeecCCCCcc-hHHHHHHHHhccchhhhcC---CeEEEEecCC----hhhHHhhhcC-CCCC
Q 015842          217 KTPPMKALELWRESPAVLLCIRRPGCIM-CRAEAHQLYAKKPIFDALG---IQLFAVLHEY----IESEVKDFWP-RYWG  287 (399)
Q Consensus       217 ~G~~VsLsdL~~~~pvVLvFyRg~gCP~-Cr~el~~L~e~~pef~alG---V~LVaIspE~----~e~~ik~F~~-~~l~  287 (399)
                      +|+++++.++ +++++| ++|...||+. |+.++..|++.+.++.+.|   +++|+|+.+.    ++ .+++|.+ ...+
T Consensus        11 ~g~~~~l~~~-~gk~~v-l~f~~~~C~~~C~~~l~~l~~~~~~~~~~~~~~v~~v~vs~d~~~d~~~-~~~~~~~~~~~~   87 (142)
T cd02968          11 DGRPVTLSDL-KGKPVL-VYFGYTHCPDVCPTTLANLAQALKQLGADGGDDVQVVFISVDPERDTPE-VLKAYAKAFGPG   87 (142)
T ss_pred             CCCEEchHHh-CCCEEE-EEEEcCCCcccCHHHHHHHHHHHHHhhHhhcCceEEEEEEECCCCCCHH-HHHHHHHHhCCC
Confidence            4899999997 555555 5556699997 9999999999999999876   9999999643    33 3677775 4578


Q ss_pred             ceeEeccc---hHHHHHhCCCcccccccccccccCHHHHHHHHHHHhcCCccccCCCCcccceEEEEecCCCcEEEEEe
Q 015842          288 GVVVYDQG---MEFFKALGGGKLLKDKFLSGFLLNPRAIANYKRARTLGVEQNFKGEGEIKGGLFIVGRGRSGIAYQFI  363 (399)
Q Consensus       288 f~VLsDp~---r~lYkaLGl~r~~r~s~lsgfl~~P~v~~~~~rA~~~G~~gn~~GD~~qLGGtFVId~gGg~I~yah~  363 (399)
                      |++++|++   ..+.++||+..           . |...         +.   ..+.....|++||||++| +|++.|.
T Consensus        88 ~~~l~~~~~~~~~~~~~~g~~~-----------~-~~~~---------~~---~~~~~~~~~~~~lid~~G-~i~~~~~  141 (142)
T cd02968          88 WIGLTGTPEEIEALAKAFGVYY-----------E-KVPE---------DD---GDYLVDHSAAIYLVDPDG-KLVRYYG  141 (142)
T ss_pred             cEEEECCHHHHHHHHHHhcEEE-----------E-ecCC---------CC---CceeEeccceEEEECCCC-CEEEeec
Confidence            99999986   78999999852           0 1100         00   001112358999999996 8999875

Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti

>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif

Probab=99.32  E-value=1.4e-11  Score=104.80  Aligned_cols=104  Identities=15%  Similarity=0.132  Sum_probs=80.9

Q ss_pred             CCceechhhccCCCEEEEeecCCCCcchHHHHHHHHhccchhhhcCCeEEEEecCChhhHHhhhcC-CCCCce-eEeccc
Q 015842          218 TPPMKALELWRESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLHEYIESEVKDFWP-RYWGGV-VVYDQG  295 (399)
Q Consensus       218 G~~VsLsdL~~~~pvVLvFyRg~gCP~Cr~el~~L~e~~pef~alGV~LVaIspE~~e~~ik~F~~-~~l~f~-VLsDp~  295 (399)
                      +++++++++ +++++||.|+ ..|||.|+.++..|.+...+   .++++|+|+.+.....+++|.. ..++|+ ++.|++
T Consensus        15 ~~~~~~~~~-~gk~vvv~F~-a~~C~~C~~~~~~l~~l~~~---~~~~vv~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~   89 (127)
T cd03010          15 DKTLTSADL-KGKPYLLNVW-ASWCAPCREEHPVLMALARQ---GRVPIYGINYKDNPENALAWLARHGNPYAAVGFDPD   89 (127)
T ss_pred             CccccHHHc-CCCEEEEEEE-cCcCHHHHHHHHHHHHHHHh---cCcEEEEEECCCCHHHHHHHHHhcCCCCceEEECCc
Confidence            378888886 6778888888 89999999999999876443   3599999996444344777774 556775 779999


Q ss_pred             hHHHHHhCCCcccccccccccccCHHHHHHHHHHHhcCCccccCCCCcccceEEEEecCCCcEEEEEecC
Q 015842          296 MEFFKALGGGKLLKDKFLSGFLLNPRAIANYKRARTLGVEQNFKGEGEIKGGLFIVGRGRSGIAYQFIER  365 (399)
Q Consensus       296 r~lYkaLGl~r~~r~s~lsgfl~~P~v~~~~~rA~~~G~~gn~~GD~~qLGGtFVId~gGg~I~yah~d~  365 (399)
                      ..+.++||+.                                      .+|.+|+||++| +|++.+.+.
T Consensus        90 ~~~~~~~~v~--------------------------------------~~P~~~~ld~~G-~v~~~~~G~  120 (127)
T cd03010          90 GRVGIDLGVY--------------------------------------GVPETFLIDGDG-IIRYKHVGP  120 (127)
T ss_pred             chHHHhcCCC--------------------------------------CCCeEEEECCCc-eEEEEEecc
Confidence            8888877763                                      157899999996 899998874

Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.

>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate

Probab=99.30  E-value=4.6e-12  Score=112.18  Aligned_cols=119  Identities=13%  Similarity=0.048  Sum_probs=82.1

Q ss_pred             CCCceechhhccCCCEEEEeecCCCCcchHHHHHHHHhccchhhhcCCeEEEEec--------CChhhHHhhhcC--CCC
Q 015842          217 KTPPMKALELWRESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLH--------EYIESEVKDFWP--RYW  286 (399)
Q Consensus       217 ~G~~VsLsdL~~~~pvVLvFyRg~gCP~Cr~el~~L~e~~pef~alGV~LVaIsp--------E~~e~~ik~F~~--~~l  286 (399)
                      +|++++++++ +++++| ++|...||| |+.++..|+++++++++.|+.+|+|+.        ++++ .+++|.+  ..+
T Consensus        11 ~G~~v~l~~~-~Gk~vv-l~fwatwC~-C~~e~p~l~~l~~~~~~~~~~vv~v~~~~~~~~~~~~~~-~~~~f~~~~~~~   86 (152)
T cd00340          11 DGEPVSLSKY-KGKVLL-IVNVASKCG-FTPQYEGLEALYEKYKDRGLVVLGFPCNQFGGQEPGSNE-EIKEFCETNYGV   86 (152)
T ss_pred             CCCEEeHHHh-CCCEEE-EEEEcCCCC-chHHHHHHHHHHHHhcCCCEEEEEeccCccccCCCCCHH-HHHHHHHHhcCC
Confidence            5999999996 555555 555599999 999999999999999999999999985        2343 3788874  578


Q ss_pred             CceeEeccch--H-HHHHhCCCcccccccccccccCHHHHHHHHHHHhcCCccccCCCCcccceEEEEecCCCcEEEEEe
Q 015842          287 GGVVVYDQGM--E-FFKALGGGKLLKDKFLSGFLLNPRAIANYKRARTLGVEQNFKGEGEIKGGLFIVGRGRSGIAYQFI  363 (399)
Q Consensus       287 ~f~VLsDp~r--~-lYkaLGl~r~~r~s~lsgfl~~P~v~~~~~rA~~~G~~gn~~GD~~qLGGtFVId~gGg~I~yah~  363 (399)
                      +||+++|++.  . .+++||...                         .++..-..+.....+.+||||++| +|++.|.
T Consensus        87 ~fp~~~d~d~~~~~~~~~~~~~~-------------------------~~~p~~~~~~~~~~~ttflId~~G-~i~~~~~  140 (152)
T cd00340          87 TFPMFAKIDVNGENAHPLYKYLK-------------------------EEAPGLLGKDIKWNFTKFLVDRDG-EVVKRFA  140 (152)
T ss_pred             CceeeeeEeccCCCCChHHHHHH-------------------------hcCCCCCCCccccccEEEEECCCC-cEEEEEC
Confidence            9999998532  1 333333200                         011100001111135799999997 8999988


Q ss_pred             cC
Q 015842          364 ER  365 (399)
Q Consensus       364 d~  365 (399)
                      +.
T Consensus       141 G~  142 (152)
T cd00340         141 PT  142 (152)
T ss_pred             CC
Confidence            85

GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.

>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source

Probab=99.27  E-value=3e-11  Score=100.37  Aligned_cols=102  Identities=13%  Similarity=0.054  Sum_probs=73.1

Q ss_pred             CCCceechhhccCCCEEEEeecCCCCcchHHHHHHHHhccchhhhcCCeEEEEecCChhhHHhhhcC-CCC-CceeEecc
Q 015842          217 KTPPMKALELWRESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLHEYIESEVKDFWP-RYW-GGVVVYDQ  294 (399)
Q Consensus       217 ~G~~VsLsdL~~~~pvVLvFyRg~gCP~Cr~el~~L~e~~pef~alGV~LVaIspE~~e~~ik~F~~-~~l-~f~VLsDp  294 (399)
                      +|+.+++.++.+++|+||.|+ ..|||.|+.++..|.+...+. +.++.+|+|+.++.+. .+.|.+ ..+ .++++.| 
T Consensus         9 ~G~~~~l~~~~~gk~vvl~F~-~~wC~~C~~~~p~l~~~~~~~-~~~~~vi~v~~~~~~~-~~~~~~~~~~~~~p~~~~-   84 (114)
T cd02967           9 DGAPVRIGGISPGRPTLLFFL-SPTCPVCKKLLPVIRSIARAE-ADWLDVVLASDGEKAE-HQRFLKKHGLEAFPYVLS-   84 (114)
T ss_pred             CCCEEEcccccCCCeEEEEEE-CCCCcchHhHhHHHHHHHHHh-cCCcEEEEEeCCCHHH-HHHHHHHhCCCCCcEEec-
Confidence            599999999754567777765 899999999999998876655 3478999998666654 666664 444 3676653 


Q ss_pred             chHHHHHhCCCcccccccccccccCHHHHHHHHHHHhcCCccccCCCCcccceEEEEecCCCcEEEEE
Q 015842          295 GMEFFKALGGGKLLKDKFLSGFLLNPRAIANYKRARTLGVEQNFKGEGEIKGGLFIVGRGRSGIAYQF  362 (399)
Q Consensus       295 ~r~lYkaLGl~r~~r~s~lsgfl~~P~v~~~~~rA~~~G~~gn~~GD~~qLGGtFVId~gGg~I~yah  362 (399)
                       ..+.++||+.                                      .+|.+||||++| +|+|..
T Consensus        85 -~~~~~~~~~~--------------------------------------~~P~~~vid~~G-~v~~~~  112 (114)
T cd02967          85 -AELGMAYQVS--------------------------------------KLPYAVLLDEAG-VIAAKG  112 (114)
T ss_pred             -HHHHhhcCCC--------------------------------------CcCeEEEECCCC-eEEecc
Confidence             2344444331                                      258999999996 888854

mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.

>TIGR02540 gpx7 putative glutathione peroxidase Gpx7

Probab=99.26  E-value=1.9e-11  Score=108.17  Aligned_cols=125  Identities=11%  Similarity=0.039  Sum_probs=88.1

Q ss_pred             CCCceechhhccCCCEEEEeecCCCCcchHHHHHHHHhccchhhhcCCeEEEEec--------CChhhHHhhhcC--CCC
Q 015842          217 KTPPMKALELWRESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLH--------EYIESEVKDFWP--RYW  286 (399)
Q Consensus       217 ~G~~VsLsdL~~~~pvVLvFyRg~gCP~Cr~el~~L~e~~pef~alGV~LVaIsp--------E~~e~~ik~F~~--~~l  286 (399)
                      +|++++++++ +++++||+ +--.|||+|..++.+|.+++.++.+.|+.+|+|.+        ++.+ .++.|.+  ..+
T Consensus        11 ~G~~~~l~~~-~Gk~vvv~-~~as~C~~c~~~~~~l~~l~~~~~~~~~~v~~i~~~~~~~~~~d~~~-~~~~f~~~~~~~   87 (153)
T TIGR02540        11 RGRTVSLEKY-RGKVSLVV-NVASECGFTDQNYRALQELHRELGPSHFNVLAFPCNQFGESEPDSSK-EIESFARRNYGV   87 (153)
T ss_pred             CCCEecHHHh-CCCEEEEE-EeCCCCCchhhhHHHHHHHHHHHhhCCeEEEEEeccccccCCCCCHH-HHHHHHHHhcCC
Confidence            5999999996 55565555 55899999999999999999999999999999984        4444 3788883  588


Q ss_pred             CceeEecc---chHHHHHhCCCcccccccccccccCHHHHHHHHHHHhcCCccccCCCCcccc----eEEEEecCCCcEE
Q 015842          287 GGVVVYDQ---GMEFFKALGGGKLLKDKFLSGFLLNPRAIANYKRARTLGVEQNFKGEGEIKG----GLFIVGRGRSGIA  359 (399)
Q Consensus       287 ~f~VLsDp---~r~lYkaLGl~r~~r~s~lsgfl~~P~v~~~~~rA~~~G~~gn~~GD~~qLG----GtFVId~gGg~I~  359 (399)
                      +||+++|.   +.....+++.                      ...   ..        -..|    .+||||++| +|+
T Consensus        88 ~fp~~~d~~~~~~~~~~~~~~----------------------~~~---~~--------~~~p~~~~~tflID~~G-~v~  133 (153)
T TIGR02540        88 TFPMFSKIKILGSEAEPAFRF----------------------LVD---SS--------KKEPRWNFWKYLVNPEG-QVV  133 (153)
T ss_pred             CCCccceEecCCCCCCcHHHH----------------------HHh---cC--------CCCCCCccEEEEEcCCC-cEE
Confidence            99999883   2221111111                      000   00        0123    499999997 899


Q ss_pred             EEEecCCCCCCCCHHHHHHHHHhh
Q 015842          360 YQFIERNFGDWAPLAEVIEICTQL  383 (399)
Q Consensus       360 yah~d~d~gDrad~eeVLaAl~~l  383 (399)
                      +.|...     .+.+++.+.++.+
T Consensus       134 ~~~~g~-----~~~~~l~~~i~~l  152 (153)
T TIGR02540       134 KFWRPE-----EPVEEIRPEITAL  152 (153)
T ss_pred             EEECCC-----CCHHHHHHHHHHh
Confidence            998775     3567776666543

This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7.

>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins

Probab=99.24  E-value=5.7e-11  Score=95.32  Aligned_cols=106  Identities=22%  Similarity=0.203  Sum_probs=85.3

Q ss_pred             CCCceechhhccCCCEEEEeecCCCCcchHHHHHHHHhccchhhhcCCeEEEEecCCh-hhHHhhhcC-CCCCceeEecc
Q 015842          217 KTPPMKALELWRESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLHEYI-ESEVKDFWP-RYWGGVVVYDQ  294 (399)
Q Consensus       217 ~G~~VsLsdL~~~~pvVLvFyRg~gCP~Cr~el~~L~e~~pef~alGV~LVaIspE~~-e~~ik~F~~-~~l~f~VLsDp  294 (399)
                      +|+.+++.++. ++++| ++|...||+.|...+..|.+...++.+.++.+++|+.+.. ...++.|.. ..++++++.|+
T Consensus         8 ~g~~~~~~~~~-~k~~l-l~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~~v~~d~~~~~~~~~~~~~~~~~~~~~~~~   85 (116)
T cd02966           8 DGKPVSLSDLK-GKVVL-VNFWASWCPPCRAEMPELEALAKEYKDDGVEVVGVNVDDDDPAAVKAFLKKYGITFPVLLDP   85 (116)
T ss_pred             CCCEeehHHcC-CCEEE-EEeecccChhHHHHhHHHHHHHHHhCCCCeEEEEEECCCCCHHHHHHHHHHcCCCcceEEcC
Confidence            58999999974 44544 5555789999999999999999999888999999998773 334777774 66899999999


Q ss_pred             chHHHHHhCCCcccccccccccccCHHHHHHHHHHHhcCCccccCCCCcccceEEEEecCCCcEEEEEe
Q 015842          295 GMEFFKALGGGKLLKDKFLSGFLLNPRAIANYKRARTLGVEQNFKGEGEIKGGLFIVGRGRSGIAYQFI  363 (399)
Q Consensus       295 ~r~lYkaLGl~r~~r~s~lsgfl~~P~v~~~~~rA~~~G~~gn~~GD~~qLGGtFVId~gGg~I~yah~  363 (399)
                      +..+++.||+.                                      ..|.+||+|++| +|++.+.
T Consensus        86 ~~~~~~~~~~~--------------------------------------~~P~~~l~d~~g-~v~~~~~  115 (116)
T cd02966          86 DGELAKAYGVR--------------------------------------GLPTTFLIDRDG-RIRARHV  115 (116)
T ss_pred             cchHHHhcCcC--------------------------------------ccceEEEECCCC-cEEEEec
Confidence            99999888763                                      136789999996 8988774

TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.

>KOG0854 consensus Alkyl hydroperoxide reductase, thiol specific antioxidant and related enzymes [Posttranslational modification, protein turnover, chaperones]

Probab=99.22  E-value=2.9e-10  Score=105.14  Aligned_cols=142  Identities=18%  Similarity=0.246  Sum_probs=116.2

Q ss_pred             CceechhhccCCCEEEEeecCCCCcchHHHHHHHHhccchhhhcCCeEEEEecCChhh------HHhhhcC---CCCCce
Q 015842          219 PPMKALELWRESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLHEYIES------EVKDFWP---RYWGGV  289 (399)
Q Consensus       219 ~~VsLsdL~~~~pvVLvFyRg~gCP~Cr~el~~L~e~~pef~alGV~LVaIspE~~e~------~ik~F~~---~~l~f~  289 (399)
                      ..+.+-+.+.+...||+--.+...|.|.-|+.+++++.|+|++.||+++|.|.+..++      -++.|.+   +.++||
T Consensus        22 g~i~fhd~~gdSW~vLFSHPaDFTPVCTTElgr~Akl~pEF~KRnvKlialS~d~vesH~~Wi~DIks~~~~~~~~~~yP  101 (224)
T KOG0854|consen   22 GKIKFHDYLGDSWGVLFSHPADFTPVCTTELGRFAKLAPEFDKRNVKLIALSVDDVESHKDWIKDIKSYAKVKNHSVPYP  101 (224)
T ss_pred             cceehhhhcccceEEEecCcccCCcchhHHHHHHHhhChhhhhcCceEEEeehhhHHHHHHHHHHHHHHHhccCCCCCCC
Confidence            4788999888988888777777999999999999999999999999999999988765      2334442   459999


Q ss_pred             eEeccchHHHHHhCCCcccccccccccccCHHHHHHHHHHHhcCCccccCCCCcccceEEEEecCCCcEEEEEecCCCCC
Q 015842          290 VVYDQGMEFFKALGGGKLLKDKFLSGFLLNPRAIANYKRARTLGVEQNFKGEGEIKGGLFIVGRGRSGIAYQFIERNFGD  369 (399)
Q Consensus       290 VLsDp~r~lYkaLGl~r~~r~s~lsgfl~~P~v~~~~~rA~~~G~~gn~~GD~~qLGGtFVId~gGg~I~yah~d~d~gD  369 (399)
                      |+.|+.+.++-.|||-             +|...             +..|++....++||||++. +|+..+..+.+..
T Consensus       102 IIaD~~rela~~l~Ml-------------D~~e~-------------~~~~~~~T~Ravfvi~pdk-KirLs~lYP~ttG  154 (224)
T KOG0854|consen  102 IIADPNRELAFLLNML-------------DPEEK-------------KNIGDGKTVRAVFVIDPDK-KIRLSFLYPSTTG  154 (224)
T ss_pred             eecCCchhhhhhhccc-------------CHhHc-------------CCCCCCceEEEEEEECCCc-eEEEEEEcccccC
Confidence            9999999999988873             44411             2236677789999999995 9999999887766


Q ss_pred             CCCHHHHHHHHHhhhhhhc
Q 015842          370 WAPLAEVIEICTQLQDQQR  388 (399)
Q Consensus       370 rad~eeVLaAl~~l~~~~~  388 (399)
                      | +.+|||.++..++=.+.
T Consensus       155 R-N~dEiLRvidsLqlt~~  172 (224)
T KOG0854|consen  155 R-NFDEILRVIDSLQLTDK  172 (224)
T ss_pred             c-CHHHHHHHHHHHhhhcc
Confidence            6 58999999999875553

>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif

Probab=99.11  E-value=8.2e-10  Score=92.88  Aligned_cols=101  Identities=16%  Similarity=0.165  Sum_probs=78.5

Q ss_pred             CCCceechhhccCCCEEEEeecCCCCcchHHHHHHHHhccchhhhcCCeEEEEecC--ChhhHHhhhcC-CCCCceeEec
Q 015842          217 KTPPMKALELWRESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLHE--YIESEVKDFWP-RYWGGVVVYD  293 (399)
Q Consensus       217 ~G~~VsLsdL~~~~pvVLvFyRg~gCP~Cr~el~~L~e~~pef~alGV~LVaIspE--~~e~~ik~F~~-~~l~f~VLsD  293 (399)
                      +|+.+++.++ +++++||.|+ ..|||.|+.++..|.+.+.+     +++++|+-+  +.+ .++.|.+ ..++|+++.|
T Consensus         9 ~g~~~~~~~~-~~k~~vl~F~-~~~C~~C~~~~~~l~~~~~~-----~~~i~i~~~~~~~~-~~~~~~~~~~~~~~~~~d   80 (123)
T cd03011           9 DGEQFDLESL-SGKPVLVYFW-ATWCPVCRFTSPTVNQLAAD-----YPVVSVALRSGDDG-AVARFMQKKGYGFPVIND   80 (123)
T ss_pred             CCCEeeHHHh-CCCEEEEEEE-CCcChhhhhhChHHHHHHhh-----CCEEEEEccCCCHH-HHHHHHHHcCCCccEEEC
Confidence            5889999986 5578888888 88999999999999887655     577788743  233 3666664 6789999999


Q ss_pred             cchHHHHHhCCCcccccccccccccCHHHHHHHHHHHhcCCccccCCCCcccceEEEEecCCCcEEEEEecC
Q 015842          294 QGMEFFKALGGGKLLKDKFLSGFLLNPRAIANYKRARTLGVEQNFKGEGEIKGGLFIVGRGRSGIAYQFIER  365 (399)
Q Consensus       294 p~r~lYkaLGl~r~~r~s~lsgfl~~P~v~~~~~rA~~~G~~gn~~GD~~qLGGtFVId~gGg~I~yah~d~  365 (399)
                      ++..+.+.||+..                                      .|..||+|++ + |++.+.+.
T Consensus        81 ~~~~~~~~~~i~~--------------------------------------~P~~~vid~~-g-i~~~~~g~  112 (123)
T cd03011          81 PDGVISARWGVSV--------------------------------------TPAIVIVDPG-G-IVFVTTGV  112 (123)
T ss_pred             CCcHHHHhCCCCc--------------------------------------ccEEEEEcCC-C-eEEEEecc
Confidence            9999999887631                                      4789999998 3 88877654

The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.

>KOG0852 consensus Alkyl hydroperoxide reductase, thiol specific antioxidant and related enzymes [Posttranslational modification, protein turnover, chaperones]

Probab=99.00  E-value=3.6e-09  Score=97.74  Aligned_cols=149  Identities=17%  Similarity=0.184  Sum_probs=113.7

Q ss_pred             ccccCCCceechhhccCCCEEEEeecCCCCcchHHHHHHHHhccchhhhcCCeEEEEecCChhhHHhhhcC-----CCC-
Q 015842          213 LVKTKTPPMKALELWRESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLHEYIESEVKDFWP-----RYW-  286 (399)
Q Consensus       213 ~v~~~G~~VsLsdL~~~~pvVLvFyRg~gCP~Cr~el~~L~e~~pef~alGV~LVaIspE~~e~~ik~F~~-----~~l-  286 (399)
                      +|+..=+.++|+++ ..+-+|+.||...+.-.|=.|..++++..++|++.|+++++||.++.-. +.+|..     +++ 
T Consensus        18 VVdG~f~e~~L~dy-~gkyvvlfFyplDftfVcPteIiafSd~~~eF~~~n~eVig~S~DS~fs-hlAW~ntprk~gGlg   95 (196)
T KOG0852|consen   18 VVDGEFKEIKLSDY-KGKYVVLFFYPLDFTFVCPTEIIAFSDRAPEFRKLNTEVLGISTDSVFS-HLAWINTPRKQGGLG   95 (196)
T ss_pred             EEcCcceEEeehhh-cccEEEEEecCCceeeECchhhhhhhhhHHHHHhcCCeEEEEeccchhh-hhhHhcCchhhCCcC
Confidence            34444568899996 5578899999999999999999999999999999999999999988765 666652     344 


Q ss_pred             --CceeEeccchHHHHHhCCCcccccccccccccCHHHHHHHHHHHhcCCccccCCCCcccceEEEEecCCCcEEEEEec
Q 015842          287 --GGVVVYDQGMEFFKALGGGKLLKDKFLSGFLLNPRAIANYKRARTLGVEQNFKGEGEIKGGLFIVGRGRSGIAYQFIE  364 (399)
Q Consensus       287 --~f~VLsDp~r~lYkaLGl~r~~r~s~lsgfl~~P~v~~~~~rA~~~G~~gn~~GD~~qLGGtFVId~gGg~I~yah~d  364 (399)
                        ..|+++|+++++.+.||+-.             +                   .+|..+.|.||||++| .++-. .-
T Consensus        96 ~~~iPllsD~~~~IsrdyGvL~-------------~-------------------~~G~~lRglfIId~~g-i~R~i-t~  141 (196)
T KOG0852|consen   96 PLNIPLLSDLNHEISRDYGVLK-------------E-------------------DEGIALRGLFIIDPDG-ILRQI-TI  141 (196)
T ss_pred             ccccceeeccchhhHHhcCcee-------------c-------------------CCCcceeeeEEEcccc-ceEEe-ee
Confidence              48999999999999999831             1                   2344567999999996 44433 33


Q ss_pred             CCCCCCCCHHHHHHHHHhhhhhh----------cccccccccc
Q 015842          365 RNFGDWAPLAEVIEICTQLQDQQ----------RDQSETIKTS  397 (399)
Q Consensus       365 ~d~gDrad~eeVLaAl~~l~~~~----------~~~~~~~~~~  397 (399)
                      .|..---.++|+|..+++.|-..          .+||.|||..
T Consensus       142 NDlpvgRSVdE~lRLvqAfQ~td~~geVcPagW~pgs~tikp~  184 (196)
T KOG0852|consen  142 NDLPVGRSVDETLRLVQAFQFTDEHGEVCPAGWKPGSDTIKPD  184 (196)
T ss_pred             cccCCCccHHHHHHHHHHHhhhhccCccccCCCCCCCcccCCC
Confidence            33444446788888888876332          6788999864

>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional

Probab=98.96  E-value=6.4e-09  Score=110.24  Aligned_cols=150  Identities=10%  Similarity=0.126  Sum_probs=101.2

Q ss_pred             CcccccCcCCCCCCCCCCCCcccccCccccccchhhhcccccccccCCCceechhhccCCCEEEEeecCCCCcchHHHHH
Q 015842          171 AVPRVCGCIQAPPVNEKVAPYSAIENISIQKLTPEYKIGMERLVKTKTPPMKALELWRESPAVLLCIRRPGCIMCRAEAH  250 (399)
Q Consensus       171 ~~l~a~g~~~~a~~~~~~apl~~L~~i~l~~l~~~~~~g~~~~v~~~G~~VsLsdL~~~~pvVLvFyRg~gCP~Cr~el~  250 (399)
                      +.+-.+||-.....+++...-..+|++++.++              +|+.++++   +++||||.|+ ..|||.|+.++-
T Consensus        15 ~~~~~s~c~~~~~~~~~~~~~~~lP~f~l~D~--------------dG~~v~ls---kGKpVvV~FW-ATWCppCk~emP   76 (521)
T PRK14018         15 CLLALGACSPKILDAGTATVPHTLSTLKTADN--------------RPASVYLK---KDKPTLIKFW-ASWCPLCLSELG   76 (521)
T ss_pred             HHHhhcccccccCccccccccCCCCCeEeecC--------------CCceeecc---CCCEEEEEEE-cCCCHHHHHHHH
Confidence            33445555433333343222234556665544              48888876   5556565555 899999999999


Q ss_pred             HHHhccchhhhcCCeEEEEecC-----ChhhHHhhhcC--CCCCceeEeccchHHHHHhCCCcccccccccccccCHHHH
Q 015842          251 QLYAKKPIFDALGIQLFAVLHE-----YIESEVKDFWP--RYWGGVVVYDQGMEFFKALGGGKLLKDKFLSGFLLNPRAI  323 (399)
Q Consensus       251 ~L~e~~pef~alGV~LVaIspE-----~~e~~ik~F~~--~~l~f~VLsDp~r~lYkaLGl~r~~r~s~lsgfl~~P~v~  323 (399)
                      .|.++..+.+..|+++|+|+-+     .....++.|..  ++..++++.|++..+.++||+.                  
T Consensus        77 ~L~eL~~e~k~~~v~VI~Vs~~~~~~e~~~~~~~~~~~~~~y~~~pV~~D~~~~lak~fgV~------------------  138 (521)
T PRK14018         77 ETEKWAQDAKFSSANLITVASPGFLHEKKDGDFQKWYAGLDYPKLPVLTDNGGTLAQSLNIS------------------  138 (521)
T ss_pred             HHHHHHHHhccCCeEEEEEecccccccccHHHHHHHHHhCCCcccceeccccHHHHHHcCCC------------------
Confidence            9999988887778999999742     11122444443  2335789999999999988773                  


Q ss_pred             HHHHHHHhcCCccccCCCCcccceEEEEecCCCcEEEEEecCCCCCCCCHHHHHHHHHh
Q 015842          324 ANYKRARTLGVEQNFKGEGEIKGGLFIVGRGRSGIAYQFIERNFGDWAPLAEVIEICTQ  382 (399)
Q Consensus       324 ~~~~rA~~~G~~gn~~GD~~qLGGtFVId~gGg~I~yah~d~d~gDrad~eeVLaAl~~  382 (399)
                                          -+|.+||||++| .|++.+.+.-     +.++|.+.++.
T Consensus       139 --------------------giPTt~IIDkdG-kIV~~~~G~~-----~~eeL~a~Ie~  171 (521)
T PRK14018        139 --------------------VYPSWAIIGKDG-DVQRIVKGSI-----SEAQALALIRN  171 (521)
T ss_pred             --------------------CcCeEEEEcCCC-eEEEEEeCCC-----CHHHHHHHHHH
Confidence                                157899999996 8999998863     45666666653

>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif

Probab=98.89  E-value=5.9e-09  Score=89.25  Aligned_cols=87  Identities=10%  Similarity=0.065  Sum_probs=61.5

Q ss_pred             ccCCCceechhhccCCCEEEEeecCCCCcchHHHHHHHHhccchhhhc--CCeEEEEecCChhhHHhhhcC-C---CCCc
Q 015842          215 KTKTPPMKALELWRESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDAL--GIQLFAVLHEYIESEVKDFWP-R---YWGG  288 (399)
Q Consensus       215 ~~~G~~VsLsdL~~~~pvVLvFyRg~gCP~Cr~el~~L~e~~pef~al--GV~LVaIspE~~e~~ik~F~~-~---~l~f  288 (399)
                      +.+|+.++++++ +++++||.|+ ..|||.|+.++..|++.+.+++..  ++++|+|+.+......+.|.. .   .++|
T Consensus         5 ~~~G~~v~l~~~-~gk~vll~Fw-a~wC~~C~~~~p~l~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~   82 (131)
T cd03009           5 RNDGGKVPVSSL-EGKTVGLYFS-ASWCPPCRAFTPKLVEFYEKLKESGKNFEIVFISWDRDEESFNDYFSKMPWLAVPF   82 (131)
T ss_pred             ccCCCCccHHHh-CCcEEEEEEE-CCCChHHHHHhHHHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHcCCeeEccc
Confidence            446999999996 5666666555 689999999999999999998875  788999997765444555543 1   1233


Q ss_pred             eeEeccchHHHHHhCC
Q 015842          289 VVVYDQGMEFFKALGG  304 (399)
Q Consensus       289 ~VLsDp~r~lYkaLGl  304 (399)
                      +. +|+...+.++||+
T Consensus        83 ~~-~~~~~~~~~~~~v   97 (131)
T cd03009          83 SD-RERRSRLNRTFKI   97 (131)
T ss_pred             CC-HHHHHHHHHHcCC
Confidence            22 3455566666665

TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the

>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX

Probab=98.77  E-value=2.8e-08  Score=85.77  Aligned_cols=63  Identities=14%  Similarity=0.184  Sum_probs=48.5

Q ss_pred             CceechhhccCCCEEEEeecCCCCcchHHHHHHHHhccchhhhc--CCeEEEEecCChhhHHhhhcC
Q 015842          219 PPMKALELWRESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDAL--GIQLFAVLHEYIESEVKDFWP  283 (399)
Q Consensus       219 ~~VsLsdL~~~~pvVLvFyRg~gCP~Cr~el~~L~e~~pef~al--GV~LVaIspE~~e~~ik~F~~  283 (399)
                      ++++++++ +++++| ++|=..||+.|+.++..|++.+.+++..  ++.+++|+.+.....++.|..
T Consensus         8 ~~v~l~~~-~Gk~vl-l~F~atwC~~C~~~~p~l~~l~~~~~~~~~~v~vi~Vs~d~~~~~~~~~~~   72 (132)
T cd02964           8 GVVPVSAL-EGKTVG-LYFSASWCPPCRAFTPKLVEFYEKLKEEGKNFEIVFVSRDRSEESFNEYFS   72 (132)
T ss_pred             ccccHHHh-CCCEEE-EEEECCCCchHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCCHHHHHHHHh
Confidence            59999986 555545 4555999999999999999988888775  789999987654444666664

Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.

>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors

Probab=98.69  E-value=6.8e-08  Score=86.93  Aligned_cols=102  Identities=12%  Similarity=-0.011  Sum_probs=71.9

Q ss_pred             CceechhhccCCCEEEEeecCCCCcchHHHHHHHHhccchhhhc-------CCeEEEEecCChhhHHhhhcC-CC--CCc
Q 015842          219 PPMKALELWRESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDAL-------GIQLFAVLHEYIESEVKDFWP-RY--WGG  288 (399)
Q Consensus       219 ~~VsLsdL~~~~pvVLvFyRg~gCP~Cr~el~~L~e~~pef~al-------GV~LVaIspE~~e~~ik~F~~-~~--l~f  288 (399)
                      +.++++++ ++++++|.|. -.|||.|+.++-.|.+.+.++.+.       ++.+|+|+.+.....++.|.+ ..  |++
T Consensus        16 ~~~~ls~~-kgk~vlL~Fw-AsWCppCr~e~P~L~~ly~~~~~~~~~~~~~~~~vV~Vs~D~~~~~~~~f~~~~~~~~~~   93 (146)
T cd03008          16 EREIVARL-ENRVLLLFFG-AVVSPQCQLFAPKLKDFFVRLTDEFYVDRSAQLALVYVSMDQSEQQQESFLKDMPKKWLF   93 (146)
T ss_pred             ccccHHHh-CCCEEEEEEE-CCCChhHHHHHHHHHHHHHHHHhhcccccCCCEEEEEEECCCCHHHHHHHHHHCCCCcee
Confidence            35667775 6667776666 889999999999999988777653       789999997655444666664 43  434


Q ss_pred             eeEec-cchHHHHHhCCCcccccccccccccCHHHHHHHHHHHhcCCccccCCCCcccceEEEEecCCCcEEEE
Q 015842          289 VVVYD-QGMEFFKALGGGKLLKDKFLSGFLLNPRAIANYKRARTLGVEQNFKGEGEIKGGLFIVGRGRSGIAYQ  361 (399)
Q Consensus       289 ~VLsD-p~r~lYkaLGl~r~~r~s~lsgfl~~P~v~~~~~rA~~~G~~gn~~GD~~qLGGtFVId~gGg~I~ya  361 (399)
                      +.+.| .+..+.++||+.                                      -+|.+||||++| +|+..
T Consensus        94 ~p~~~~~~~~l~~~y~v~--------------------------------------~iPt~vlId~~G-~Vv~~  128 (146)
T cd03008          94 LPFEDEFRRELEAQFSVE--------------------------------------ELPTVVVLKPDG-DVLAA  128 (146)
T ss_pred             ecccchHHHHHHHHcCCC--------------------------------------CCCEEEEECCCC-cEEee
Confidence            33333 345777766652                                      258999999996 77754

RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.

>PRK13728 conjugal transfer protein TrbB; Provisional

Probab=98.68  E-value=2.3e-07  Score=86.39  Aligned_cols=107  Identities=10%  Similarity=0.004  Sum_probs=75.7

Q ss_pred             CCCceechhhccCCCEEEEeecCCCCcchHHHHHHHHhccchhhhcCCeEEEEecCChhhHHhhhcCCCCCceeEec-cc
Q 015842          217 KTPPMKALELWRESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLHEYIESEVKDFWPRYWGGVVVYD-QG  295 (399)
Q Consensus       217 ~G~~VsLsdL~~~~pvVLvFyRg~gCP~Cr~el~~L~e~~pef~alGV~LVaIspE~~e~~ik~F~~~~l~f~VLsD-p~  295 (399)
                      +|+.++++++-     ||+|+. .|||+|+.++-.|.+...++   |+.+++|+-+..         ....||++.| ++
T Consensus        62 dG~~v~lsd~~-----lV~Fwa-swCp~C~~e~P~L~~l~~~~---g~~Vi~Vs~D~~---------~~~~fPv~~dd~~  123 (181)
T PRK13728         62 NGRQVNLADWK-----VVLFMQ-GHCPYCHQFDPVLKQLAQQY---GFSVFPYTLDGQ---------GDTAFPEALPAPP  123 (181)
T ss_pred             CCCEeehhHce-----EEEEEC-CCCHhHHHHHHHHHHHHHHc---CCEEEEEEeCCC---------CCCCCceEecCch
Confidence            59999999973     555655 99999999999998876664   799999996532         1357899985 66


Q ss_pred             hHHHHHhCCCcccccccccccccCHHHHHHHHHHHhcCCccccCCCCcccceEEEEecCCCcEEE-EEecCCCCCCCCHH
Q 015842          296 MEFFKALGGGKLLKDKFLSGFLLNPRAIANYKRARTLGVEQNFKGEGEIKGGLFIVGRGRSGIAY-QFIERNFGDWAPLA  374 (399)
Q Consensus       296 r~lYkaLGl~r~~r~s~lsgfl~~P~v~~~~~rA~~~G~~gn~~GD~~qLGGtFVId~gGg~I~y-ah~d~d~gDrad~e  374 (399)
                      ..+.+.||...                                    ...|.+||||++| .|.| .|++.     .+.+
T Consensus       124 ~~~~~~~g~~~------------------------------------~~iPttfLId~~G-~i~~~~~~G~-----~~~~  161 (181)
T PRK13728        124 DVMQTFFPNIP------------------------------------VATPTTFLVNVNT-LEALPLLQGA-----TDAA  161 (181)
T ss_pred             hHHHHHhCCCC------------------------------------CCCCeEEEEeCCC-cEEEEEEECC-----CCHH
Confidence            66766665310                                    1258999999996 7765 67774     3344


Q ss_pred             HHHHHHHhh
Q 015842          375 EVIEICTQL  383 (399)
Q Consensus       375 eVLaAl~~l  383 (399)
                      ++.+.+..+
T Consensus       162 ~L~~~I~~l  170 (181)
T PRK13728        162 GFMARMDTV  170 (181)
T ss_pred             HHHHHHHHH
Confidence            554444444

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=98.59  E-value=3.8e-07  Score=104.05  Aligned_cols=122  Identities=15%  Similarity=0.135  Sum_probs=88.3

Q ss_pred             CCCceechhhccCCCEEEEeecCCCCcchHHHHHHHHhccchhhhcCCeEEEEecC-----ChhhHHhhhcC-CCCCcee
Q 015842          217 KTPPMKALELWRESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLHE-----YIESEVKDFWP-RYWGGVV  290 (399)
Q Consensus       217 ~G~~VsLsdL~~~~pvVLvFyRg~gCP~Cr~el~~L~e~~pef~alGV~LVaIspE-----~~e~~ik~F~~-~~l~f~V  290 (399)
                      +|+++++.+-++++++| +-|--.|||.|+.++-.|.++..+++..|+.+|+|...     .....++.|.. ..++|++
T Consensus       408 ~g~~~~l~~~lkGK~vl-l~FWAsWC~pC~~e~P~L~~l~~~y~~~~~~vvgV~~~~~D~~~~~~~~~~~~~~~~i~~pv  486 (1057)
T PLN02919        408 NTAPLQFRRDLKGKVVI-LDFWTYCCINCMHVLPDLEFLEKKYKDQPFTVVGVHSAKFDNEKDLEAIRNAVLRYNISHPV  486 (1057)
T ss_pred             CCccccchhhcCCCEEE-EEEECCcChhHHhHhHHHHHHHHHcCCCCeEEEEEecccccccccHHHHHHHHHHhCCCccE
Confidence            48899986445665555 45567799999999999999999998889999999621     11123555653 6789999


Q ss_pred             EeccchHHHHHhCCCcccccccccccccCHHHHHHHHHHHhcCCccccCCCCcccceEEEEecCCCcEEEEEecCCCCCC
Q 015842          291 VYDQGMEFFKALGGGKLLKDKFLSGFLLNPRAIANYKRARTLGVEQNFKGEGEIKGGLFIVGRGRSGIAYQFIERNFGDW  370 (399)
Q Consensus       291 LsDp~r~lYkaLGl~r~~r~s~lsgfl~~P~v~~~~~rA~~~G~~gn~~GD~~qLGGtFVId~gGg~I~yah~d~d~gDr  370 (399)
                      +.|.+..+++.||+.                                      -+|.+||||++| +|++.+.+..  ..
T Consensus       487 v~D~~~~~~~~~~V~--------------------------------------~iPt~ilid~~G-~iv~~~~G~~--~~  525 (1057)
T PLN02919        487 VNDGDMYLWRELGVS--------------------------------------SWPTFAVVSPNG-KLIAQLSGEG--HR  525 (1057)
T ss_pred             EECCchHHHHhcCCC--------------------------------------ccceEEEECCCC-eEEEEEeccc--CH
Confidence            999999998887763                                      147899999997 8988876642  33


Q ss_pred             CCHHHHHHHH
Q 015842          371 APLAEVIEIC  380 (399)
Q Consensus       371 ad~eeVLaAl  380 (399)
                      ..++++++.+
T Consensus       526 ~~l~~~l~~~  535 (1057)
T PLN02919        526 KDLDDLVEAA  535 (1057)
T ss_pred             HHHHHHHHHH
Confidence            3344444443

>PRK10606 btuE putative glutathione peroxidase; Provisional

Probab=98.58  E-value=2.8e-07  Score=85.72  Aligned_cols=82  Identities=10%  Similarity=0.050  Sum_probs=63.4

Q ss_pred             CCCceechhhccCCCEEEEeecCCCCcchHHHHHHHHhccchhhhcCCeEEEEec--------CChhhHHhhhcC--CCC
Q 015842          217 KTPPMKALELWRESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLH--------EYIESEVKDFWP--RYW  286 (399)
Q Consensus       217 ~G~~VsLsdL~~~~pvVLvFyRg~gCP~Cr~el~~L~e~~pef~alGV~LVaIsp--------E~~e~~ik~F~~--~~l  286 (399)
                      +|++++|+++ +++++||+| --.||++|. +..+|++++.++.+.|+.+++|.+        ++.+ ++++|..  ..+
T Consensus        14 ~G~~v~Ls~~-~GKvvLVvf-~AS~C~~~~-q~~~L~~L~~~y~~~gl~Vlg~p~nqf~~qe~~~~~-ei~~f~~~~~g~   89 (183)
T PRK10606         14 DGEVTTLEKY-AGNVLLIVN-VASKCGLTP-QYEQLENIQKAWADQGFVVLGFPCNQFLGQEPGSDE-EIKTYCRTTWGV   89 (183)
T ss_pred             CCCEEeHHHh-CCCEEEEEE-EeCCCCCcH-HHHHHHHHHHHHhhCCeEEEEeeccccccCCCCCHH-HHHHHHHHccCC
Confidence            4999999995 555555555 788999996 688999999999999999999986        2333 4888884  568


Q ss_pred             CceeEeccc------hHHHHHh
Q 015842          287 GGVVVYDQG------MEFFKAL  302 (399)
Q Consensus       287 ~f~VLsDp~------r~lYkaL  302 (399)
                      +|+|++|-+      .-+|+-|
T Consensus        90 ~Fpv~~k~dvnG~~~~pl~~~L  111 (183)
T PRK10606         90 TFPMFSKIEVNGEGRHPLYQKL  111 (183)
T ss_pred             CceeEEEEccCCCCCCHHHHHH
Confidence            999995544      2377765

>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626

Probab=98.54  E-value=4.3e-07  Score=84.77  Aligned_cols=119  Identities=13%  Similarity=-0.031  Sum_probs=86.2

Q ss_pred             CCceechhhccCCCEEEEeecCCCCcchHHHHHHHHhccchhhhcCCeE------EEEecCCh----hhHHhhhcC-CCC
Q 015842          218 TPPMKALELWRESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQL------FAVLHEYI----ESEVKDFWP-RYW  286 (399)
Q Consensus       218 G~~VsLsdL~~~~pvVLvFyRg~gCP~Cr~el~~L~e~~pef~alGV~L------VaIspE~~----e~~ik~F~~-~~l  286 (399)
                      .++++.++|-  |++.|+-|=-.||+-|+.+.-.|.++    ++.|+.+      ++|.-+..    ...++.|.+ ...
T Consensus        49 y~~~~~~~l~--GKV~lvn~~Aswc~~c~~e~P~l~~l----~~~~~~~~~y~~t~~IN~dd~~~~~~~fVk~fie~~~~  122 (184)
T TIGR01626        49 YQPWGSAELA--GKVRVVHHIAGRTSAKEXNASLIDAI----KAAKFPPVKYQTTTIINADDAIVGTGMFVKSSAKKGKK  122 (184)
T ss_pred             ceeccHHHcC--CCEEEEEEEecCCChhhccchHHHHH----HHcCCCcccccceEEEECccchhhHHHHHHHHHHHhcc
Confidence            5578888874  67777777888999999999888776    6678888      99986652    223444443 444


Q ss_pred             Cce---eEeccchHHHHHhCCCcccccccccccccCHHHHHHHHHHHhcCCccccCCCCcccceE-EEEecCCCcEEEEE
Q 015842          287 GGV---VVYDQGMEFFKALGGGKLLKDKFLSGFLLNPRAIANYKRARTLGVEQNFKGEGEIKGGL-FIVGRGRSGIAYQF  362 (399)
Q Consensus       287 ~f~---VLsDp~r~lYkaLGl~r~~r~s~lsgfl~~P~v~~~~~rA~~~G~~gn~~GD~~qLGGt-FVId~gGg~I~yah  362 (399)
                      .||   ++.|++..+..+||+..                                      +|-+ ||||++| +|++.|
T Consensus       123 ~~P~~~vllD~~g~v~~~~gv~~--------------------------------------~P~T~fVIDk~G-kVv~~~  163 (184)
T TIGR01626       123 ENPWSQVVLDDKGAVKNAWQLNS--------------------------------------EDSAIIVLDKTG-KVKFVK  163 (184)
T ss_pred             cCCcceEEECCcchHHHhcCCCC--------------------------------------CCceEEEECCCC-cEEEEE
Confidence            566   99999999998888741                                      3456 9999997 999999


Q ss_pred             ecCCCCCCCCHHHHHHHHHhh
Q 015842          363 IERNFGDWAPLAEVIEICTQL  383 (399)
Q Consensus       363 ~d~d~gDrad~eeVLaAl~~l  383 (399)
                      .+.-.  ..++++++..++++
T Consensus       164 ~G~l~--~ee~e~~~~li~~l  182 (184)
T TIGR01626       164 EGALS--DSDIQTVISLVNGL  182 (184)
T ss_pred             eCCCC--HHHHHHHHHHHHHH
Confidence            99632  22445666666554

This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.

>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A

Probab=98.22  E-value=9.9e-06  Score=65.27  Aligned_cols=75  Identities=21%  Similarity=0.188  Sum_probs=49.5

Q ss_pred             CCEEEEeecCCCCcchHHHHHHHHhccchhh-hcCCeEEEEecCChhhHHhhhcC-CCCCceeEecc---chHHHHHhCC
Q 015842          230 SPAVLLCIRRPGCIMCRAEAHQLYAKKPIFD-ALGIQLFAVLHEYIESEVKDFWP-RYWGGVVVYDQ---GMEFFKALGG  304 (399)
Q Consensus       230 ~pvVLvFyRg~gCP~Cr~el~~L~e~~pef~-alGV~LVaIspE~~e~~ik~F~~-~~l~f~VLsDp---~r~lYkaLGl  304 (399)
                      +++++++|=..||+.|+.++..|.+.+.++. ..++++|+|+.+.-....+++.+ ...++..+...   ...+.+.||+
T Consensus         1 gK~~ll~fwa~~c~~c~~~~~~l~~l~~~~~~~~~v~~v~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i   80 (95)
T PF13905_consen    1 GKPVLLYFWASWCPPCKKELPKLKELYKKYKKKDDVEFVFVSLDEDEEEWKKFLKKNNFPWYNVPFDDDNNSELLKKYGI   80 (95)
T ss_dssp             TSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEE-SSSHHHHHHHHHTCTTSSEEEETTTHHHHHHHHHTT-
T ss_pred             CCEEEEEEECCCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEeCCCHHHHHHHHHhcCCCceEEeeCcchHHHHHHHCCC
Confidence            3456677778899999999999999998888 77899999998755444555554 33455443333   3344444443

...

>COG2077 Tpx Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]

Probab=98.13  E-value=2.1e-05  Score=71.43  Aligned_cols=140  Identities=10%  Similarity=0.119  Sum_probs=105.7

Q ss_pred             CCCCCCCCCCCcccccCccccccchhhhcccccccccCCCceechhhccCCCEEEEeecCCCCcchHHHHHHHHhccchh
Q 015842          180 QAPPVNEKVAPYSAIENISIQKLTPEYKIGMERLVKTKTPPMKALELWRESPAVLLCIRRPGCIMCRAEAHQLYAKKPIF  259 (399)
Q Consensus       180 ~~a~~~~~~apl~~L~~i~l~~l~~~~~~g~~~~v~~~G~~VsLsdL~~~~pvVLvFyRg~gCP~Cr~el~~L~e~~pef  259 (399)
                      ...+++|+++|.|+|-+-+                   .+.+++.+. ++++.||..|..--.|.|-.+++.+++....+
T Consensus        15 g~~~~vGd~ap~ftl~~~d-------------------L~~v~l~~~-~gk~~vi~v~PSiDT~VC~~qvr~Fn~~aa~~   74 (158)
T COG2077          15 GNEPQVGDKAPDFTLVGKD-------------------LNDVSLADF-AGKKKVISVFPSIDTPVCATQVRKFNEEAAKL   74 (158)
T ss_pred             CCCCccCCcCCceEEEcCc-------------------ccceecccc-CCceEEEEEccCCCCchhhHHHHHHHHHHhcc
Confidence            4568999999988876664                   446667774 66788999999999999999999999887766


Q ss_pred             hhcCCeEEEEecCChhhHHhhhcC-CCCC-ceeEecc-chHHHHHhCCCcccccccccccccCHHHHHHHHHHHhcCCcc
Q 015842          260 DALGIQLFAVLHEYIESEVKDFWP-RYWG-GVVVYDQ-GMEFFKALGGGKLLKDKFLSGFLLNPRAIANYKRARTLGVEQ  336 (399)
Q Consensus       260 ~alGV~LVaIspE~~e~~ik~F~~-~~l~-f~VLsDp-~r~lYkaLGl~r~~r~s~lsgfl~~P~v~~~~~rA~~~G~~g  336 (399)
                      ..  +.+..||.+.|-. .++|+. +++. --.+||= ++.+-++||+.-            ....+             
T Consensus        75 ~~--~~Vl~IS~DLPFA-q~RfC~aeGi~nv~~lSd~r~~~Fge~yGv~I------------~egpL-------------  126 (158)
T COG2077          75 GN--TVVLCISMDLPFA-QKRFCGAEGIENVITLSDFRDRAFGENYGVLI------------NEGPL-------------  126 (158)
T ss_pred             CC--cEEEEEeCCChhH-HhhhhhhcCcccceEhhhhhhhhhhHhhCEEe------------ccccc-------------
Confidence            43  8899999998854 688885 5554 5678884 556778888851            00000             


Q ss_pred             ccCCCCcccceEEEEecCCCcEEEEEecCCCCCCCC
Q 015842          337 NFKGEGEIKGGLFIVGRGRSGIAYQFIERNFGDWAP  372 (399)
Q Consensus       337 n~~GD~~qLGGtFVId~gGg~I~yah~d~d~gDrad  372 (399)
                          .++.-.++||+|.+| .|.|..+-++..++|+
T Consensus       127 ----~gLlARaV~V~De~g-~V~y~elv~eit~ePn  157 (158)
T COG2077         127 ----AGLLARAVFVLDENG-KVTYSELVPEITEEPN  157 (158)
T ss_pred             ----cCeeeeEEEEEcCCC-cEEEEEccchhhcCCC
Confidence                023346999999996 8999999998888875

>TIGR02740 TraF-like TraF-like protein

Probab=98.00  E-value=3.8e-05  Score=75.46  Aligned_cols=109  Identities=12%  Similarity=0.091  Sum_probs=72.2

Q ss_pred             CCceechhhccCCCEEEEeecCCCCcchHHHHHHHHhccchhhhcCCeEEEEecCChhhHHhhhcCCCCCceeEeccchH
Q 015842          218 TPPMKALELWRESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLHEYIESEVKDFWPRYWGGVVVYDQGME  297 (399)
Q Consensus       218 G~~VsLsdL~~~~pvVLvFyRg~gCP~Cr~el~~L~e~~pef~alGV~LVaIspE~~e~~ik~F~~~~l~f~VLsDp~r~  297 (399)
                      .+...+++| +++++||.||+. |||+|+.++-.|.+...+.   |+++++|+-+....  .       .|+.+ +.+..
T Consensus       156 ~~~~~l~~l-~~k~~Lv~F~As-wCp~C~~~~P~L~~la~~y---g~~Vi~VsvD~~~~--~-------~fp~~-~~d~~  220 (271)
T TIGR02740       156 QKDRVMKDL-AKKSGLFFFFKS-DCPYCHQQAPILQAFEDRY---GIEVLPVSVDGGPL--P-------GFPNA-RPDAG  220 (271)
T ss_pred             HHHHHHHHh-cCCeEEEEEECC-CCccHHHHhHHHHHHHHHc---CcEEEEEeCCCCcc--c-------cCCcc-cCCHH
Confidence            445677775 566777777775 9999999999998876554   78999998654221  1       14444 44555


Q ss_pred             HHHHhCCCcccccccccccccCHHHHHHHHHHHhcCCccccCCCCcccceEEEEecCCCcEEEEEecCCCCCCCCHHHHH
Q 015842          298 FFKALGGGKLLKDKFLSGFLLNPRAIANYKRARTLGVEQNFKGEGEIKGGLFIVGRGRSGIAYQFIERNFGDWAPLAEVI  377 (399)
Q Consensus       298 lYkaLGl~r~~r~s~lsgfl~~P~v~~~~~rA~~~G~~gn~~GD~~qLGGtFVId~gGg~I~yah~d~d~gDrad~eeVL  377 (399)
                      +.+.||+.                                      .+|.+|+++++|+.|...+.+     ..+.++|.
T Consensus       221 la~~~gV~--------------------------------------~vPtl~Lv~~~~~~v~~v~~G-----~~s~~eL~  257 (271)
T TIGR02740       221 QAQQLKIR--------------------------------------TVPAVFLADPDPNQFTPIGFG-----VMSADELV  257 (271)
T ss_pred             HHHHcCCC--------------------------------------cCCeEEEEECCCCEEEEEEeC-----CCCHHHHH
Confidence            66666653                                      258999999954466544444     34556776


Q ss_pred             HHHHhhh
Q 015842          378 EICTQLQ  384 (399)
Q Consensus       378 aAl~~l~  384 (399)
                      +.+..+.
T Consensus       258 ~~i~~~a  264 (271)
T TIGR02740       258 DRILLAA  264 (271)
T ss_pred             HHHHHHh
Confidence            6666554

This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.

>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB

Probab=97.90  E-value=9.6e-05  Score=66.93  Aligned_cols=48  Identities=17%  Similarity=0.259  Sum_probs=36.3

Q ss_pred             CCCceechhhccCCCEEEEeecCCCCcchHHHHHHHHhccchhhhcCCeEEEEecCC
Q 015842          217 KTPPMKALELWRESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLHEY  273 (399)
Q Consensus       217 ~G~~VsLsdL~~~~pvVLvFyRg~gCP~Cr~el~~L~e~~pef~alGV~LVaIspE~  273 (399)
                      .|+.+++++.     .||.|+. .|||+|+.++-.|.+...+.   |+.+++|+-+.
T Consensus        43 ~G~~~~l~~~-----~lvnFWA-sWCppCr~e~P~L~~l~~~~---~~~Vi~Vs~d~   90 (153)
T TIGR02738        43 QGRHANQDDY-----ALVFFYQ-STCPYCHQFAPVLKRFSQQF---GLPVYAFSLDG   90 (153)
T ss_pred             cchhhhcCCC-----EEEEEEC-CCChhHHHHHHHHHHHHHHc---CCcEEEEEeCC
Confidence            3777776654     3666655 69999999999999876554   78999998653

This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.

>PF05988 DUF899: Bacterial protein of unknown function (DUF899); InterPro: IPR010296 This family consists of uncharacterised bacterial proteins of unknown function which are thioredoxin-like

Probab=97.83  E-value=0.00011  Score=69.99  Aligned_cols=85  Identities=16%  Similarity=0.234  Sum_probs=71.9

Q ss_pred             ceechhhccCCCEEEE--ee----cCCCCcchHHHHHHHHhccchhhhcCCeEEEEecCChhhHHhhhcC-CCCCceeEe
Q 015842          220 PMKALELWRESPAVLL--CI----RRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLHEYIESEVKDFWP-RYWGGVVVY  292 (399)
Q Consensus       220 ~VsLsdL~~~~pvVLv--Fy----Rg~gCP~Cr~el~~L~e~~pef~alGV~LVaIspE~~e~~ik~F~~-~~l~f~VLs  292 (399)
                      +|+|.+|++++..+|+  |.    +..+||.|...+..+.-..+.|.+.++.+|+|+...++. +..|.+ .+|.|+.||
T Consensus        57 ~v~L~dLF~Gr~qLivyhfM~~p~~~~~C~gCs~~~D~~~g~l~hL~~rd~tfa~vSraP~~~-i~afk~rmGW~~pw~S  135 (211)
T PF05988_consen   57 PVSLADLFEGRRQLIVYHFMFGPDWDEGCPGCSFWADHIDGALRHLHARDTTFAVVSRAPLEK-IEAFKRRMGWTFPWYS  135 (211)
T ss_pred             cccHHHHcCCCceEEEEeeccCCCCCCCCCchhhhHhhhhhhHHHHHhCCceEEEEeCCCHHH-HHHHHHhcCCCceEEE
Confidence            5999999998764433  22    245899999999999888999999999999999999886 899986 899999999


Q ss_pred             ccchHHHHHhCCC
Q 015842          293 DQGMEFFKALGGG  305 (399)
Q Consensus       293 Dp~r~lYkaLGl~  305 (399)
                      .-+..+-..||..
T Consensus       136 s~gs~Fn~D~~~~  148 (211)
T PF05988_consen  136 SYGSDFNYDFGVS  148 (211)
T ss_pred             cCCCcccccccce
Confidence            9988888777764

>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A

Probab=97.50  E-value=0.00025  Score=58.69  Aligned_cols=45  Identities=18%  Similarity=0.344  Sum_probs=27.2

Q ss_pred             CCCEEEEeecCCCCcchHHHHHHHHh---ccchhhhcCCeEEEEecCChh
Q 015842          229 ESPAVLLCIRRPGCIMCRAEAHQLYA---KKPIFDALGIQLFAVLHEYIE  275 (399)
Q Consensus       229 ~~pvVLvFyRg~gCP~Cr~el~~L~e---~~pef~alGV~LVaIspE~~e  275 (399)
                      ++|+||+| -..|||||+..-.++.+   ....++. ++.++.+..+...
T Consensus         5 ~k~~v~~F-~~~~C~~C~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~   52 (112)
T PF13098_consen    5 GKPIVVVF-TDPWCPYCKKLEKELFPDNDVARYLKD-DFQVIFVNIDDSR   52 (112)
T ss_dssp             SSEEEEEE-E-TT-HHHHHHHHHHHHHHHHHCEEHC-ECEEEECESHSHH
T ss_pred             CCEEEEEE-ECCCCHHHHHHHHHHHHHHHHHHHhhc-CeEEEEEecCCcc
Confidence            35666666 48999999977777664   3344432 5677777765543

...

>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation

Probab=97.29  E-value=0.0019  Score=54.92  Aligned_cols=110  Identities=14%  Similarity=0.132  Sum_probs=60.8

Q ss_pred             hhccCC-CEEEEeecCCCCcchHHHHHHHHh---ccchhhhcCCeEEEEecCChhhHHhhhcCCCCCceeEeccchHHHH
Q 015842          225 ELWRES-PAVLLCIRRPGCIMCRAEAHQLYA---KKPIFDALGIQLFAVLHEYIESEVKDFWPRYWGGVVVYDQGMEFFK  300 (399)
Q Consensus       225 dL~~~~-pvVLvFyRg~gCP~Cr~el~~L~e---~~pef~alGV~LVaIspE~~e~~ik~F~~~~l~f~VLsDp~r~lYk  300 (399)
                      +..+++ +.|+++|-..||++|+.....+.+   ....+++ ++.++.|..+.... +..|.       -..++...+..
T Consensus         8 ~a~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~-~~~~~~i~~d~~~~-~~~~~-------~~~~~~~~l~~   78 (125)
T cd02951           8 EAAADGKKPLLLLFSQPGCPYCDKLKRDYLNDPAVQAYIRA-HFVVVYINIDGDKE-VTDFD-------GEALSEKELAR   78 (125)
T ss_pred             HHHHcCCCcEEEEEeCCCCHHHHHHHHHhcCcHHHHHHHHh-heEEEEEEccCCce-eeccC-------CCCccHHHHHH
Confidence            334455 455556668999999998887753   3333432 56666665433211 11111       01112333444


Q ss_pred             HhCCCcccccccccccccCHHHHHHHHHHHhcCCccccCCCCcccceEEEEecCCCcEEEEEecCCCCCCCCHHHHHHHH
Q 015842          301 ALGGGKLLKDKFLSGFLLNPRAIANYKRARTLGVEQNFKGEGEIKGGLFIVGRGRSGIAYQFIERNFGDWAPLAEVIEIC  380 (399)
Q Consensus       301 aLGl~r~~r~s~lsgfl~~P~v~~~~~rA~~~G~~gn~~GD~~qLGGtFVId~gGg~I~yah~d~d~gDrad~eeVLaAl  380 (399)
                      +||+.                                      -.|.+++++++||.++..+.+.     .+.+++.+.+
T Consensus        79 ~~~v~--------------------------------------~~Pt~~~~~~~gg~~~~~~~G~-----~~~~~~~~~l  115 (125)
T cd02951          79 KYRVR--------------------------------------FTPTVIFLDPEGGKEIARLPGY-----LPPDEFLAYL  115 (125)
T ss_pred             HcCCc--------------------------------------cccEEEEEcCCCCceeEEecCC-----CCHHHHHHHH
Confidence            33331                                      2588999999833777766553     3456777777


Q ss_pred             Hhhhhh
Q 015842          381 TQLQDQ  386 (399)
Q Consensus       381 ~~l~~~  386 (399)
                      +.+..+
T Consensus       116 ~~~~~~  121 (125)
T cd02951         116 EYVQEK  121 (125)
T ss_pred             HHHHhh
Confidence            776544

Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.

>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus

Probab=97.12  E-value=0.00082  Score=59.61  Aligned_cols=79  Identities=10%  Similarity=0.117  Sum_probs=53.9

Q ss_pred             CCceechhhccCCCEEEEeecCCCCcchHHHHHHHHhccchhhhcCCeEEEEecCChh--hHHhhhcCCCCCceeEeccc
Q 015842          218 TPPMKALELWRESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLHEYIE--SEVKDFWPRYWGGVVVYDQG  295 (399)
Q Consensus       218 G~~VsLsdL~~~~pvVLvFyRg~gCP~Cr~el~~L~e~~pef~alGV~LVaIspE~~e--~~ik~F~~~~l~f~VLsDp~  295 (399)
                      +....+.+....+..||++|-..||+.|+.....|.++..++.. .++++.|.-+...  ..++.|.-..+|.-++.|++
T Consensus         8 ~~~~~~~~a~~~gk~vvV~F~A~WC~~C~~~~p~l~~l~~~~~~-~~~~v~v~vd~~~~~~~~~~~~V~~iPt~v~~~~~   86 (142)
T cd02950           8 ASSTPPEVALSNGKPTLVEFYADWCTVCQEMAPDVAKLKQKYGD-QVNFVMLNVDNPKWLPEIDRYRVDGIPHFVFLDRE   86 (142)
T ss_pred             hccCCHHHHHhCCCEEEEEEECCcCHHHHHhHHHHHHHHHHhcc-CeeEEEEEcCCcccHHHHHHcCCCCCCEEEEECCC
Confidence            55666777666665566666788999999999999888777653 3677777644321  22455544677877888865


Q ss_pred             hH
Q 015842          296 ME  297 (399)
Q Consensus       296 r~  297 (399)
                      .+
T Consensus        87 G~   88 (142)
T cd02950          87 GN   88 (142)
T ss_pred             CC
Confidence            43

It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.

>KOG2501 consensus Thioredoxin, nucleoredoxin and related proteins [General function prediction only]

Probab=96.94  E-value=0.00085  Score=61.49  Aligned_cols=71  Identities=18%  Similarity=0.141  Sum_probs=54.3

Q ss_pred             ccccccCCCceechhhccCCCEEEEeecCCCCcchHHHHHHHHhccchhhhcCC--eEEEEecCChhhHHhhhc
Q 015842          211 ERLVKTKTPPMKALELWRESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALGI--QLFAVLHEYIESEVKDFW  282 (399)
Q Consensus       211 ~~~v~~~G~~VsLsdL~~~~pvVLvFyRg~gCP~Cr~el~~L~e~~pef~alGV--~LVaIspE~~e~~ik~F~  282 (399)
                      +.+.+.+|..+..++-+++ ++|..+|+-.|||-||..--.|.+.+.++++.+.  .||.||.+.-++....|.
T Consensus        15 ~~l~~~~~~~~~~~~~l~g-KvV~lyFsA~wC~pCR~FTP~Lk~fYe~l~~~~~~fEVvfVS~D~~~~~~~~y~   87 (157)
T KOG2501|consen   15 NRLRKQDGTEVLASEALQG-KVVGLYFSAHWCPPCRDFTPILKDFYEELKDNAAPFEVVFVSSDRDEESLDEYM   87 (157)
T ss_pred             CeeeccCCccchHhHhhCC-cEEEEEEEEEECCchhhCCchHHHHHHHHHhcCCceEEEEEecCCCHHHHHHHH
Confidence            3444556778878876665 8999999999999999999999998888887654  577788776655455544

>PF02630 SCO1-SenC: SCO1/SenC; InterPro: IPR003782 This family is involved in biogenesis of respiratory and photosynthetic systems

Probab=96.90  E-value=0.0048  Score=56.55  Aligned_cols=64  Identities=11%  Similarity=0.151  Sum_probs=45.4

Q ss_pred             CCCceechhhccCCCEEEEeecCCCCc-chHHHHHHHHhccchhhhc--CCeEEEEec----CChhhHHhhhcC
Q 015842          217 KTPPMKALELWRESPAVLLCIRRPGCI-MCRAEAHQLYAKKPIFDAL--GIQLFAVLH----EYIESEVKDFWP  283 (399)
Q Consensus       217 ~G~~VsLsdL~~~~pvVLvFyRg~gCP-~Cr~el~~L~e~~pef~al--GV~LVaIsp----E~~e~~ik~F~~  283 (399)
                      +|++++++++ +++++|| +|=...|| .|-..+..|+++..++.+.  .+++|.|+-    ++++ .+++|.+
T Consensus        41 ~G~~~~~~~~-~Gk~~lv-~F~yT~CpdvCp~~l~~l~~~~~~l~~~~~~v~~v~ISvDP~~DTp~-~L~~Y~~  111 (174)
T PF02630_consen   41 DGKTVTLDDL-KGKWVLV-FFGYTRCPDVCPTTLANLSQLQKQLGEEGKDVQFVFISVDPERDTPE-VLKKYAK  111 (174)
T ss_dssp             TSSEEEGGGG-TTSEEEE-EEE-TTSSSHHHHHHHHHHHHHHHHHHTTTTEEEEEEESSTTTC-HH-HHHHHHH
T ss_pred             CCCEecHHHh-CCCeEEE-EEEEcCCCccCHHHHHHHHHHHHHhhhccCceEEEEEEeCCCCCCHH-HHHHHHH
Confidence            5999999886 5555454 45555674 8999999999998888865  678888983    3444 3666664

In yeast the SCO1 protein is specifically required for a post-translational step in the accumulation of subunits 1 and 2 of cytochrome c oxidase (COXI and COX-II) []. It is a mitochondrion-associated cytochrome c oxidase assembly factor. The purple nonsulphur photosynthetic eubacterium Rhodobacter capsulatus is a versatile organism that can obtain cellular energy by several means, including the capture of light energy for photosynthesis as well as the use of light-independent respiration, in which molecular oxygen serves as a terminal electron acceptor. The SenC protein is required for optimal cytochrome c oxidase activity in aerobically grown R. capsulatus cells and is involved in the induction of structural polypeptides of the light-harvesting and reaction centre complexes [].; PDB: 2K6V_A 3ME8_A 3ME7_A 2GT6_A 2GQL_A 2GQK_A 2GGT_B 1WP0_C 2HRN_A 2GQM_A ....

>COG4312 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.89  E-value=0.0017  Score=62.49  Aligned_cols=87  Identities=15%  Similarity=0.191  Sum_probs=71.9

Q ss_pred             CCceechhhccCCCEEE--EeecCC----CCcchHHHHHHHHhccchhhhcCCeEEEEecCChhhHHhhhcC-CCCCcee
Q 015842          218 TPPMKALELWRESPAVL--LCIRRP----GCIMCRAEAHQLYAKKPIFDALGIQLFAVLHEYIESEVKDFWP-RYWGGVV  290 (399)
Q Consensus       218 G~~VsLsdL~~~~pvVL--vFyRg~----gCP~Cr~el~~L~e~~pef~alGV~LVaIspE~~e~~ik~F~~-~~l~f~V  290 (399)
                      .-+++|.||++++--+|  .|+-++    +||.|..-+..+--..+-|+..+|.||+|+....++ +..|.. .+|.|+.
T Consensus        61 ~G~~sLadLF~grsqLIvYhfmF~P~~~~~C~gCS~laD~~dGa~~HL~~~dv~lv~VsRAPl~~-l~~~k~rmGW~f~w  139 (247)
T COG4312          61 NGKKSLADLFGGRSQLIVYHFMFGPGWDHGCPGCSFLADHWDGAVAHLEHHDVTLVAVSRAPLEE-LVAYKRRMGWQFPW  139 (247)
T ss_pred             CcchhHHHHhCCCceEEEEEEecCCCccCCCCchhhHHhhhhhhhhhHhhcCceEEEEecCcHHH-HHHHHHhcCCccee
Confidence            33899999999765433  344333    899999999999989999999999999999888876 777775 8999999


Q ss_pred             EeccchHHHHHhCCC
Q 015842          291 VYDQGMEFFKALGGG  305 (399)
Q Consensus       291 LsDp~r~lYkaLGl~  305 (399)
                      +|+.+..|=+.|.+.
T Consensus       140 ~Ss~~s~Fn~Df~vs  154 (247)
T COG4312         140 VSSTDSDFNRDFQVS  154 (247)
T ss_pred             EeccCcccccccccc
Confidence            999999998888663

>COG1999 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems [General function prediction only]

Probab=96.82  E-value=0.025  Score=53.62  Aligned_cols=137  Identities=14%  Similarity=0.123  Sum_probs=78.6

Q ss_pred             ccCCCceechhhccCCCEEEEeecCCCCc-chHHHHHHHHhccchhh---hcCCeEEEEec----CChhhHHhhhcC-CC
Q 015842          215 KTKTPPMKALELWRESPAVLLCIRRPGCI-MCRAEAHQLYAKKPIFD---ALGIQLFAVLH----EYIESEVKDFWP-RY  285 (399)
Q Consensus       215 ~~~G~~VsLsdL~~~~pvVLvFyRg~gCP-~Cr~el~~L~e~~pef~---alGV~LVaIsp----E~~e~~ik~F~~-~~  285 (399)
                      +.+|+++++.+| +++|+||.| =..-|| .|...+..|...+.++.   ...+++|.|+-    ++++. +++|.. ++
T Consensus        54 d~~G~~~~~~~l-~Gk~~lv~F-gyT~CpdVCP~~l~~l~~~~~~l~~~~~~~v~vv~itvDPerDtp~~-lk~Y~~~~~  130 (207)
T COG1999          54 DQDGKPFTLKDL-KGKPSLVFF-GYTHCPDVCPTTLAELKALLKKLGEGEGDDVQVVFITVDPERDTPEV-LKKYAELNF  130 (207)
T ss_pred             cCCCCEeecccc-CCCEEEEEe-ecCCCCccChHHHHHHHHHHHHhccccCCCEEEEEEEECCCCCCHHH-HHHHhcccC
Confidence            446999999998 555666555 334566 89999999988888777   55566777873    33332 444443 22


Q ss_pred             CC-ceeEe---ccchHHHHHhCCCcccccccccccccCHHHHHHHHHHHhcCCccccCCCC-c-ccceEEEEecCCCcEE
Q 015842          286 WG-GVVVY---DQGMEFFKALGGGKLLKDKFLSGFLLNPRAIANYKRARTLGVEQNFKGEG-E-IKGGLFIVGRGRSGIA  359 (399)
Q Consensus       286 l~-f~VLs---Dp~r~lYkaLGl~r~~r~s~lsgfl~~P~v~~~~~rA~~~G~~gn~~GD~-~-qLGGtFVId~gGg~I~  359 (399)
                      .+ +.-++   +.-.+++++|++-.    +                     ....+-.++- . --...|+||++| .+.
T Consensus       131 ~~~~~~ltg~~~~~~~~~k~~~V~~----~---------------------~v~~~~~~~y~~~Hs~~~~lid~~G-~~~  184 (207)
T COG1999         131 DPRWIGLTGTPEQIEEVAKAYGVFY----S---------------------KVPLDDSQNYTIDHSAGFYLIDADG-RFL  184 (207)
T ss_pred             CCCeeeeeCCHHHHHHHHHHhccee----e---------------------ecccCCCCCceeeeeeEEEEECCCC-eEE
Confidence            11 11111   12234444444320    0                     0000000111 1 137899999996 666


Q ss_pred             EEEecCCCCCCCCHHHHHHHHHhhhh
Q 015842          360 YQFIERNFGDWAPLAEVIEICTQLQD  385 (399)
Q Consensus       360 yah~d~d~gDrad~eeVLaAl~~l~~  385 (399)
                      ..+.....     +++|++.++.+-+
T Consensus       185 ~~~~~~~~-----~~~i~~~l~~l~~  205 (207)
T COG1999         185 GTYDYGEP-----PEEIAADLKKLLK  205 (207)
T ss_pred             EEecCCCC-----hHHHHHHHHHHhh
Confidence            66655433     8999999888753

>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains

Probab=96.44  E-value=0.0036  Score=50.49  Aligned_cols=73  Identities=14%  Similarity=0.146  Sum_probs=45.9

Q ss_pred             chhhccCCCEEEEeecCCCCcchHHHHHHHHhccchhhh--cCCeEEEEecCChhhHHhhhcCCCCCceeEeccch
Q 015842          223 ALELWRESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDA--LGIQLFAVLHEYIESEVKDFWPRYWGGVVVYDQGM  296 (399)
Q Consensus       223 LsdL~~~~pvVLvFyRg~gCP~Cr~el~~L~e~~pef~a--lGV~LVaIspE~~e~~ik~F~~~~l~f~VLsDp~r  296 (399)
                      +.+...+++++|.|| ..||+.|+.....+.+...+++.  ..+.++.|-.+......+.|.-..+|--++...+.
T Consensus        10 f~~~~~~~~~lv~f~-a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~   84 (102)
T cd03005          10 FDHHIAEGNHFVKFF-APWCGHCKRLAPTWEQLAKKFNNENPSVKIAKVDCTQHRELCSEFQVRGYPTLLLFKDGE   84 (102)
T ss_pred             HHHHhhcCCEEEEEE-CCCCHHHHHhCHHHHHHHHHHhccCCcEEEEEEECCCChhhHhhcCCCcCCEEEEEeCCC
Confidence            344445667666655 88999999999998888777765  35677777665544323444434455444444443

Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.

>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44

Probab=96.40  E-value=0.0031  Score=52.49  Aligned_cols=66  Identities=12%  Similarity=0.133  Sum_probs=41.2

Q ss_pred             ccCCCEEEEeecCCCCcchHHHHHHHHhccchhhhcCCeEEEEecC-ChhhHHhhhcCCCCCceeEeccc
Q 015842          227 WRESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLHE-YIESEVKDFWPRYWGGVVVYDQG  295 (399)
Q Consensus       227 ~~~~pvVLvFyRg~gCP~Cr~el~~L~e~~pef~alGV~LVaIspE-~~e~~ik~F~~~~l~f~VLsDp~  295 (399)
                      .++++ ||+.|...||+.|+.....|.++..++.  ++.++.|-.+ .-....+.|.-..+|--++.+.+
T Consensus        16 ~~g~~-vlV~F~a~WC~~C~~~~p~l~~la~~~~--~~~~~~vd~~~~~~~l~~~~~V~~~PT~~lf~~g   82 (100)
T cd02999          16 NREDY-TAVLFYASWCPFSASFRPHFNALSSMFP--QIRHLAIEESSIKPSLLSRYGVVGFPTILLFNST   82 (100)
T ss_pred             cCCCE-EEEEEECCCCHHHHhHhHHHHHHHHHhc--cCceEEEECCCCCHHHHHhcCCeecCEEEEEcCC
Confidence            45545 5555669999999999999988776664  5777777544 22222333432445555556655

CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.

>PF13728 TraF: F plasmid transfer operon protein

Probab=96.36  E-value=0.014  Score=55.61  Aligned_cols=48  Identities=17%  Similarity=0.275  Sum_probs=36.9

Q ss_pred             echhhccCCCEEEEeecCCCCcchHHHHHHHHhccchhhhcCCeEEEEecCCh
Q 015842          222 KALELWRESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLHEYI  274 (399)
Q Consensus       222 sLsdL~~~~pvVLvFyRg~gCP~Cr~el~~L~e~~pef~alGV~LVaIspE~~  274 (399)
                      .+.++ +++--+++|||+ .||||..++--|+....+.   |.++++|+.+..
T Consensus       114 ~l~~l-a~~~gL~~F~~~-~C~~C~~~~pil~~~~~~y---g~~v~~vs~DG~  161 (215)
T PF13728_consen  114 ALKQL-AQKYGLFFFYRS-DCPYCQQQAPILQQFADKY---GFSVIPVSLDGR  161 (215)
T ss_pred             HHHHH-hhCeEEEEEEcC-CCchhHHHHHHHHHHHHHh---CCEEEEEecCCC
Confidence            45555 355668888887 8999999999888766544   999999997653

>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains

Probab=96.16  E-value=0.015  Score=44.43  Aligned_cols=64  Identities=16%  Similarity=0.143  Sum_probs=41.2

Q ss_pred             CEEEEeecCCCCcchHHHHHHHHhccchhhhcCCeEEEEecCChhhHHhhhcCCCCCceeEeccch
Q 015842          231 PAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLHEYIESEVKDFWPRYWGGVVVYDQGM  296 (399)
Q Consensus       231 pvVLvFyRg~gCP~Cr~el~~L~e~~pef~alGV~LVaIspE~~e~~ik~F~~~~l~f~VLsDp~r  296 (399)
                      ..+|++|-..||+.|+.....|.+...+  ..++.++.|-.+......+.|.-...|.-++.+.+.
T Consensus        11 ~~~ll~~~~~~C~~C~~~~~~~~~~~~~--~~~~~~~~i~~~~~~~~~~~~~v~~~P~~~~~~~g~   74 (93)
T cd02947          11 KPVVVDFWAPWCGPCKAIAPVLEELAEE--YPKVKFVKVDVDENPELAEEYGVRSIPTFLFFKNGK   74 (93)
T ss_pred             CcEEEEEECCCChhHHHhhHHHHHHHHH--CCCceEEEEECCCChhHHHhcCcccccEEEEEECCE
Confidence            3445555567999999998888876554  467888888766543334455434556555555554

Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio

>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains

Probab=96.14  E-value=0.014  Score=47.59  Aligned_cols=73  Identities=12%  Similarity=0.060  Sum_probs=47.4

Q ss_pred             hhccCCCEEEEeecCCCCcchHHHHHHHHhccchhhhcCCeEEEEecCChhhHHhhhcCCCCCceeEeccchHH
Q 015842          225 ELWRESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLHEYIESEVKDFWPRYWGGVVVYDQGMEF  298 (399)
Q Consensus       225 dL~~~~pvVLvFyRg~gCP~Cr~el~~L~e~~pef~alGV~LVaIspE~~e~~ik~F~~~~l~f~VLsDp~r~l  298 (399)
                      .+.+++++|+++|-..||+.|+.....|.++..++.. ++.++.|-.+........+.-...|.-++.+.++.+
T Consensus         8 ~~~~~~~~vlv~f~a~~C~~C~~~~~~l~~l~~~~~~-~v~~~~id~d~~~~l~~~~~v~~vPt~~i~~~g~~v   80 (97)
T cd02949           8 LYHESDRLILVLYTSPTCGPCRTLKPILNKVIDEFDG-AVHFVEIDIDEDQEIAEAAGIMGTPTVQFFKDKELV   80 (97)
T ss_pred             HHHhCCCeEEEEEECCCChhHHHHHHHHHHHHHHhCC-ceEEEEEECCCCHHHHHHCCCeeccEEEEEECCeEE
Confidence            4556677788888889999999999998887666643 466666665443332344433456655555544443

The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.

>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein

Probab=96.07  E-value=0.0054  Score=50.81  Aligned_cols=76  Identities=13%  Similarity=0.124  Sum_probs=48.4

Q ss_pred             hhhccCCCEEEEeecCCCCcchHHHHHHHHhccchhhhcCCeEEEEecCChhhHHhhhcCCCCCceeEeccchHHHH
Q 015842          224 LELWRESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLHEYIESEVKDFWPRYWGGVVVYDQGMEFFK  300 (399)
Q Consensus       224 sdL~~~~pvVLvFyRg~gCP~Cr~el~~L~e~~pef~alGV~LVaIspE~~e~~ik~F~~~~l~f~VLsDp~r~lYk  300 (399)
                      .++...+..||+.|-..||+.|+.....|.+...++...++.++.|--+..+ .+++|.-...|--++...+..+.+
T Consensus        11 ~~~i~~~~~vvv~F~a~wC~~Ck~~~p~l~~~~~~~~~~~~~~~~vd~d~~~-~~~~~~v~~~Pt~~~~~~g~~~~~   86 (102)
T cd02948          11 EELLSNKGLTVVDVYQEWCGPCKAVVSLFKKIKNELGDDLLHFATAEADTID-TLKRYRGKCEPTFLFYKNGELVAV   86 (102)
T ss_pred             HHHHccCCeEEEEEECCcCHhHHHHhHHHHHHHHHcCCCcEEEEEEeCCCHH-HHHHcCCCcCcEEEEEECCEEEEE
Confidence            4444555667777788999999999999988777776445677777766443 356665444443333333433333

Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which

>KOG0541 consensus Alkyl hydroperoxide reductase/peroxiredoxin [Posttranslational modification, protein turnover, chaperones]

Probab=96.04  E-value=0.03  Score=51.64  Aligned_cols=87  Identities=14%  Similarity=0.051  Sum_probs=69.9

Q ss_pred             CCceechhhccCCCEEEEeecCCCCcc-hHHHHHHHHhccchhhhcCCeEEEEe-cCChhhHHhhhcC-CC--CCceeEe
Q 015842          218 TPPMKALELWRESPAVLLCIRRPGCIM-CRAEAHQLYAKKPIFDALGIQLFAVL-HEYIESEVKDFWP-RY--WGGVVVY  292 (399)
Q Consensus       218 G~~VsLsdL~~~~pvVLvFyRg~gCP~-Cr~el~~L~e~~pef~alGV~LVaIs-pE~~e~~ik~F~~-~~--l~f~VLs  292 (399)
                      +.++++++|.+.+++||+=..+...|- |..++--+-+...+|++.|+..|++. -.++ -.++.|.+ ..  =....++
T Consensus        32 ~~tv~~~~l~~GKKvIifGvPgAFtPtCs~~HvPGyi~~a~elksKGVd~iicvSVnDp-Fv~~aW~k~~g~~~~V~f~a  110 (171)
T KOG0541|consen   32 GNTVNVSSLFKGKKVILFGVPGAFTPTCSSSHVPGYIEKADELKSKGVDEIICVSVNDP-FVMKAWAKSLGANDHVKFVA  110 (171)
T ss_pred             cceEEhHHhcCCceEEEEcCCCccCCccccccCchHHHHHHHHHhcCCcEEEEEecCcH-HHHHHHHhhcCccceEEEEe
Confidence            459999999999999999999999999 67788899999999999999976654 4444 33566654 11  1345899


Q ss_pred             ccchHHHHHhCCC
Q 015842          293 DQGMEFFKALGGG  305 (399)
Q Consensus       293 Dp~r~lYkaLGl~  305 (399)
                      |++..+.++||+.
T Consensus       111 D~~g~ftk~lgle  123 (171)
T KOG0541|consen  111 DPAGEFTKSLGLE  123 (171)
T ss_pred             cCCCceeeeccce
Confidence            9999999999996

>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms

Probab=95.99  E-value=0.025  Score=45.13  Aligned_cols=69  Identities=16%  Similarity=0.235  Sum_probs=50.1

Q ss_pred             CCCEEEEeecCCCCcchHHHHHHHHhccchhhhcCCeEEEEecCChhhHHhhhcCCCCCceeEeccchHHH
Q 015842          229 ESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLHEYIESEVKDFWPRYWGGVVVYDQGMEFF  299 (399)
Q Consensus       229 ~~pvVLvFyRg~gCP~Cr~el~~L~e~~pef~alGV~LVaIspE~~e~~ik~F~~~~l~f~VLsDp~r~lY  299 (399)
                      ++++||.||. .||+.|+.....|.++..++.. ++.++-|-.+......+.|.-..+|--++...+....
T Consensus        17 ~~~vvv~f~~-~~C~~C~~~~~~~~~~~~~~~~-~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~~g~~~~   85 (103)
T PF00085_consen   17 DKPVVVYFYA-PWCPPCKAFKPILEKLAKEYKD-NVKFAKVDCDENKELCKKYGVKSVPTIIFFKNGKEVK   85 (103)
T ss_dssp             SSEEEEEEES-TTSHHHHHHHHHHHHHHHHTTT-TSEEEEEETTTSHHHHHHTTCSSSSEEEEEETTEEEE
T ss_pred             CCCEEEEEeC-CCCCccccccceeccccccccc-ccccchhhhhccchhhhccCCCCCCEEEEEECCcEEE
Confidence            4667777766 7999999999999998888877 8888888876554445555545666666666555444

Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....

>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD

Probab=95.99  E-value=0.016  Score=47.55  Aligned_cols=67  Identities=10%  Similarity=0.119  Sum_probs=39.2

Q ss_pred             ccCCCEEEEeecCCCCcchHHHHHHH---HhccchhhhcCCeEEEEecCCh----hhHHhhhcCCCCCceeEecc
Q 015842          227 WRESPAVLLCIRRPGCIMCRAEAHQL---YAKKPIFDALGIQLFAVLHEYI----ESEVKDFWPRYWGGVVVYDQ  294 (399)
Q Consensus       227 ~~~~pvVLvFyRg~gCP~Cr~el~~L---~e~~pef~alGV~LVaIspE~~----e~~ik~F~~~~l~f~VLsDp  294 (399)
                      .+.+..||+.|-..||+.|+.....+   .+....+.. ++.++.|-.+..    ....+.|.-..+|--++.|+
T Consensus         8 ~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~-~~~~~~vd~~~~~~~~~~~~~~~~i~~~Pti~~~~~   81 (104)
T cd02953           8 LAQGKPVFVDFTADWCVTCKVNEKVVFSDPEVQAALKK-DVVLLRADWTKNDPEITALLKRFGVFGPPTYLFYGP   81 (104)
T ss_pred             HHcCCeEEEEEEcchhHHHHHHHHHhcCCHHHHHHHhC-CeEEEEEecCCCCHHHHHHHHHcCCCCCCEEEEECC
Confidence            34444455555579999999987665   234445554 677777654331    12223333356676677775

It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.

>PRK10996 thioredoxin 2; Provisional

Probab=95.84  E-value=0.013  Score=51.61  Aligned_cols=76  Identities=16%  Similarity=0.154  Sum_probs=46.7

Q ss_pred             eechhhccCCCEEEEeecCCCCcchHHHHHHHHhccchhhhcCCeEEEEecCChhhHHhhhcCCCCCceeEeccchH
Q 015842          221 MKALELWRESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLHEYIESEVKDFWPRYWGGVVVYDQGME  297 (399)
Q Consensus       221 VsLsdL~~~~pvVLvFyRg~gCP~Cr~el~~L~e~~pef~alGV~LVaIspE~~e~~ik~F~~~~l~f~VLsDp~r~  297 (399)
                      ..+.++.++++.|+++|-..||+.|+.....|.+...++.. ++.++.|-.+......+.|.-..+|--++.+.++.
T Consensus        43 ~~~~~~i~~~k~vvv~F~a~wC~~C~~~~~~l~~l~~~~~~-~v~~~~vd~~~~~~l~~~~~V~~~Ptlii~~~G~~  118 (139)
T PRK10996         43 ETLDKLLQDDLPVVIDFWAPWCGPCRNFAPIFEDVAAERSG-KVRFVKVNTEAERELSARFRIRSIPTIMIFKNGQV  118 (139)
T ss_pred             HHHHHHHhCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhCC-CeEEEEEeCCCCHHHHHhcCCCccCEEEEEECCEE
Confidence            34555666556666666679999999998888877665543 46666665554443334443345555455554443

>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases

Probab=95.82  E-value=0.02  Score=47.83  Aligned_cols=67  Identities=7%  Similarity=0.170  Sum_probs=43.1

Q ss_pred             CCCEEEEeecCCCCcchHHHHHHHHhccchhhhcCCeEEEEecCC-hhhHHhh-hcCCCCCceeEeccch
Q 015842          229 ESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLHEY-IESEVKD-FWPRYWGGVVVYDQGM  296 (399)
Q Consensus       229 ~~pvVLvFyRg~gCP~Cr~el~~L~e~~pef~alGV~LVaIspE~-~e~~ik~-F~~~~l~f~VLsDp~r  296 (399)
                      +++++| +|-..|||.|+.....+.++...++..++.+..|-.+. ......+ |.-..+|--++.+.+.
T Consensus        21 ~k~vlv-~f~a~wC~~C~~~~~~~~~la~~~~~~~~~~~~vd~d~~~~~~~~~~~~v~~~Pti~~f~~~~   89 (109)
T cd02993          21 NQSTLV-VLYAPWCPFCQAMEASYEELAEKLAGSNVKVAKFNADGEQREFAKEELQLKSFPTILFFPKNS   89 (109)
T ss_pred             CCCEEE-EEECCCCHHHHHHhHHHHHHHHHhccCCeEEEEEECCccchhhHHhhcCCCcCCEEEEEcCCC
Confidence            345554 55589999999999999888877876678888877654 2221222 3334555555555543

APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red

>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants

Probab=95.77  E-value=0.017  Score=45.27  Aligned_cols=72  Identities=15%  Similarity=0.140  Sum_probs=46.5

Q ss_pred             chhhccCC-CEEEEeecCCCCcchHHHHHHHHhccchhh-hcCCeEEEEecCChhhHHhhhcCCCCCceeEeccc
Q 015842          223 ALELWRES-PAVLLCIRRPGCIMCRAEAHQLYAKKPIFD-ALGIQLFAVLHEYIESEVKDFWPRYWGGVVVYDQG  295 (399)
Q Consensus       223 LsdL~~~~-pvVLvFyRg~gCP~Cr~el~~L~e~~pef~-alGV~LVaIspE~~e~~ik~F~~~~l~f~VLsDp~  295 (399)
                      +.+...++ ++||.|+. .||+.|+.....+.+....++ ..++.++.|-.+......+.|.-..+|--++.+++
T Consensus         8 ~~~~i~~~~~~~v~f~~-~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~~~   81 (101)
T cd02961           8 FDELVKDSKDVLVEFYA-PWCGHCKALAPEYEKLAKELKGDGKVVVAKVDCTANNDLCSEYGVRGYPTIKLFPNG   81 (101)
T ss_pred             HHHHHhCCCcEEEEEEC-CCCHHHHhhhHHHHHHHHHhccCCceEEEEeeccchHHHHHhCCCCCCCEEEEEcCC
Confidence            44555555 56665555 799999999999988777775 55677777776653332344432455555666666

Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies

>COG0678 AHP1 Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]

Probab=95.71  E-value=0.016  Score=53.17  Aligned_cols=86  Identities=16%  Similarity=0.098  Sum_probs=68.4

Q ss_pred             CceechhhccCCCEEEEeecCCCCcchHH-HHHHHHhccchhhhcCCeEEE-EecCChhhHHhhhcC-CCC--CceeEec
Q 015842          219 PPMKALELWRESPAVLLCIRRPGCIMCRA-EAHQLYAKKPIFDALGIQLFA-VLHEYIESEVKDFWP-RYW--GGVVVYD  293 (399)
Q Consensus       219 ~~VsLsdL~~~~pvVLvFyRg~gCP~Cr~-el~~L~e~~pef~alGV~LVa-IspE~~e~~ik~F~~-~~l--~f~VLsD  293 (399)
                      ..++..+|++++++||+-+.+...|-|.. ++-.+.++.++|++.||.-|+ |+-.++ -....|.+ .+.  ...++.|
T Consensus        27 ~~~ts~~lf~gKkVvlf~lPGAFTPTCS~~hlPgY~~~~d~f~~kGVD~I~cVSVND~-FVm~AWak~~g~~~~I~fi~D  105 (165)
T COG0678          27 VDVTTDDLFKGKKVVLFSLPGAFTPTCSSSHLPGYLELADEFKAKGVDEIYCVSVNDA-FVMNAWAKSQGGEGNIKFIPD  105 (165)
T ss_pred             ccccHHHhcCCCEEEEEeCCCccCCCcccccCccHHHHHHHHHHcCCceEEEEEeCcH-HHHHHHHHhcCCCccEEEecC
Confidence            47788999999999999999999999998 999999999999999998555 444433 22344443 222  4568999


Q ss_pred             cchHHHHHhCCC
Q 015842          294 QGMEFFKALGGG  305 (399)
Q Consensus       294 p~r~lYkaLGl~  305 (399)
                      .+..+-+++|+.
T Consensus       106 g~geFTk~~Gm~  117 (165)
T COG0678         106 GNGEFTKAMGML  117 (165)
T ss_pred             CCchhhhhcCce
Confidence            999999999986

>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain

Probab=95.63  E-value=0.021  Score=49.14  Aligned_cols=71  Identities=20%  Similarity=0.272  Sum_probs=44.7

Q ss_pred             cCCCEEEEeecCCCCcchHHHHHHHHhccchhhhcCCeEEEEecCChh-hHHhhhcCC--CCCceeEeccchHHHH
Q 015842          228 RESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLHEYIE-SEVKDFWPR--YWGGVVVYDQGMEFFK  300 (399)
Q Consensus       228 ~~~pvVLvFyRg~gCP~Cr~el~~L~e~~pef~alGV~LVaIspE~~e-~~ik~F~~~--~l~f~VLsDp~r~lYk  300 (399)
                      +++|++|.|+ ..||+.|+.....+.+. +...+.+..+|.|--+..+ ...+.|...  ++|.-++.|++.++-+
T Consensus        18 ~~kpVlV~F~-a~WC~~C~~~~~~~~~~-~~~~~~~~~fv~v~vd~~~~~~~~~~~~~g~~vPt~~f~~~~Gk~~~   91 (117)
T cd02959          18 SGKPLMLLIH-KTWCGACKALKPKFAES-KEISELSHNFVMVNLEDDEEPKDEEFSPDGGYIPRILFLDPSGDVHP   91 (117)
T ss_pred             cCCcEEEEEe-CCcCHHHHHHHHHHhhh-HHHHhhcCcEEEEEecCCCCchhhhcccCCCccceEEEECCCCCCch
Confidence            3556666655 79999999999988775 3344455566666433221 112445432  4888899998865544

Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.

>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain

Probab=95.62  E-value=0.035  Score=46.80  Aligned_cols=66  Identities=14%  Similarity=0.098  Sum_probs=44.4

Q ss_pred             CCEEEEeecCCCCcchHHHHHHHHhccchhhhcCCeEEEEecCChhhHHhhhcCCCCCceeEeccc
Q 015842          230 SPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLHEYIESEVKDFWPRYWGGVVVYDQG  295 (399)
Q Consensus       230 ~pvVLvFyRg~gCP~Cr~el~~L~e~~pef~alGV~LVaIspE~~e~~ik~F~~~~l~f~VLsDp~  295 (399)
                      +..+|+.|-..||+.|+.....+.++..+++..++.++.|-.+........|.-...|--++...+
T Consensus        24 ~~~vlV~F~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~d~~~~l~~~~~V~~~Pt~~i~~~g   89 (111)
T cd02963          24 KKPYLIKITSDWCFSCIHIEPVWKEVIQELEPLGVGIATVNAGHERRLARKLGAHSVPAIVGIING   89 (111)
T ss_pred             CCeEEEEEECCccHhHHHhhHHHHHHHHHHHhcCceEEEEeccccHHHHHHcCCccCCEEEEEECC
Confidence            445666677899999999999999888888766788888876554433444443444433433433

DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.

>PRK09381 trxA thioredoxin; Provisional

Probab=95.50  E-value=0.017  Score=47.78  Aligned_cols=70  Identities=9%  Similarity=0.055  Sum_probs=44.4

Q ss_pred             CCCEEEEeecCCCCcchHHHHHHHHhccchhhhcCCeEEEEecCChhhHHhhhcCCCCCceeEeccchHHHH
Q 015842          229 ESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLHEYIESEVKDFWPRYWGGVVVYDQGMEFFK  300 (399)
Q Consensus       229 ~~pvVLvFyRg~gCP~Cr~el~~L~e~~pef~alGV~LVaIspE~~e~~ik~F~~~~l~f~VLsDp~r~lYk  300 (399)
                      ++++||.|| ..|||.|+.....|.++..++.. ++.++.|-.+......+.|.-..+|--++...+..+++
T Consensus        21 ~~~vvv~f~-~~~C~~C~~~~p~~~~l~~~~~~-~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~G~~~~~   90 (109)
T PRK09381         21 DGAILVDFW-AEWCGPCKMIAPILDEIADEYQG-KLTVAKLNIDQNPGTAPKYGIRGIPTLLLFKNGEVAAT   90 (109)
T ss_pred             CCeEEEEEE-CCCCHHHHHHhHHHHHHHHHhCC-CcEEEEEECCCChhHHHhCCCCcCCEEEEEeCCeEEEE
Confidence            556655555 56999999999888887766654 47778887765544334444345555455554444433

>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold

Probab=95.39  E-value=0.046  Score=37.58  Aligned_cols=59  Identities=20%  Similarity=0.173  Sum_probs=40.7

Q ss_pred             EeecCCCCcchHHHHHHHHhccchhhhcCCeEEEEecCChhhHHh---hhcCCCCCceeEeccc
Q 015842          235 LCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLHEYIESEVK---DFWPRYWGGVVVYDQG  295 (399)
Q Consensus       235 vFyRg~gCP~Cr~el~~L~e~~pef~alGV~LVaIspE~~e~~ik---~F~~~~l~f~VLsDp~  295 (399)
                      ++|...||++|......+.+.  .....++.++.|..+.......   .+.....|.-++.|++
T Consensus         2 ~~~~~~~c~~c~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~   63 (69)
T cd01659           2 VLFYAPWCPFCQALRPVLAEL--ALLNKGVKFEAVDVDEDPALEKELKRYGVGGVPTLVVFGPG   63 (69)
T ss_pred             EEEECCCChhHHhhhhHHHHH--HhhCCCcEEEEEEcCCChHHhhHHHhCCCccccEEEEEeCC
Confidence            456678999999999999887  5666789999998776654222   2222455555666654

Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.

>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related)

Probab=95.36  E-value=0.017  Score=46.64  Aligned_cols=49  Identities=18%  Similarity=0.182  Sum_probs=33.2

Q ss_pred             chhhccCCCEEEEeecCCCCcchHHHHHHHHhccchhhhcC-CeEEEEec
Q 015842          223 ALELWRESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALG-IQLFAVLH  271 (399)
Q Consensus       223 LsdL~~~~pvVLvFyRg~gCP~Cr~el~~L~e~~pef~alG-V~LVaIsp  271 (399)
                      +.++.++++.+++.|-..||+.|+.....+.+....+...+ +.++.|-.
T Consensus        10 ~~~~~~~~~~~~v~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~id~   59 (104)
T cd02997          10 FRKFLKKEKHVLVMFYAPWCGHCKKMKPEFTKAATELKEDGKGVLAAVDC   59 (104)
T ss_pred             HHHHHhhCCCEEEEEECCCCHHHHHhCHHHHHHHHHHhhCCceEEEEEEC
Confidence            45555655566677777899999999988888777776423 33443433

PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.

>PTZ00051 thioredoxin; Provisional

Probab=95.36  E-value=0.014  Score=47.05  Aligned_cols=68  Identities=9%  Similarity=-0.021  Sum_probs=39.8

Q ss_pred             chhhccCCCEEEEeecCCCCcchHHHHHHHHhccchhhhcCCeEEEEecCChhhHHhhhcCCCCCceeEe
Q 015842          223 ALELWRESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLHEYIESEVKDFWPRYWGGVVVY  292 (399)
Q Consensus       223 LsdL~~~~pvVLvFyRg~gCP~Cr~el~~L~e~~pef~alGV~LVaIspE~~e~~ik~F~~~~l~f~VLs  292 (399)
                      +.++.+.++.++++|-..||+.|+.....|.+...++  .++.++.|-.+......+.|.-..+|--++.
T Consensus        11 ~~~~~~~~~~vli~f~~~~C~~C~~~~~~l~~l~~~~--~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~   78 (98)
T PTZ00051         11 FESTLSQNELVIVDFYAEWCGPCKRIAPFYEECSKEY--TKMVFVKVDVDELSEVAEKENITSMPTFKVF   78 (98)
T ss_pred             HHHHHhcCCeEEEEEECCCCHHHHHHhHHHHHHHHHc--CCcEEEEEECcchHHHHHHCCCceeeEEEEE
Confidence            3445555555555555789999999988887765544  2467777765543333444432344433333

>cd00166 SAM Sterile alpha motif

Probab=95.33  E-value=0.0081  Score=44.65  Aligned_cols=51  Identities=31%  Similarity=0.492  Sum_probs=47.2

Q ss_pred             HHhhhccchhhhhhhHHHHHcCCChHHHhccCcccchhhhcccc-cccccccc
Q 015842           38 EIRSYLHDRALMQYADIFEASGKSLPELLNLSTGDLSSQFGMKR-GHMARFKD   89 (399)
Q Consensus        38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~   89 (399)
                      ++..||+.-++=+|++.+...|.+...|++++..+|. +.|++. ||..+++.
T Consensus         6 ~V~~wL~~~~~~~y~~~f~~~~i~g~~L~~l~~~dL~-~lgi~~~g~r~~i~~   57 (63)
T cd00166           6 DVAEWLESLGLGQYADNFRENGIDGDLLLLLTEEDLK-ELGITLPGHRKKILK   57 (63)
T ss_pred             HHHHHHHHcChHHHHHHHHHcCCCHHHHhHCCHHHHH-HcCCCCHHHHHHHHH
Confidence            6788999999999999999999999999999999999 999998 99877653

; Widespread domain in signalling and nuclear proteins. In EPH-related tyrosine kinases, appears to mediate cell-cell initiated signal transduction via the binding of SH2-containing proteins to a conserved tyrosine that is phosphorylated. In many cases mediates homodimerization.

>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain

Probab=95.30  E-value=0.03  Score=45.01  Aligned_cols=68  Identities=12%  Similarity=0.045  Sum_probs=44.9

Q ss_pred             CCEEEEeecCCCCcchHHHHHHHHhccchhhhcCCeEEEEecCChhhHHhhhcCCCCCceeEeccchHH
Q 015842          230 SPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLHEYIESEVKDFWPRYWGGVVVYDQGMEF  298 (399)
Q Consensus       230 ~pvVLvFyRg~gCP~Cr~el~~L~e~~pef~alGV~LVaIspE~~e~~ik~F~~~~l~f~VLsDp~r~l  298 (399)
                      +..||+.|-..||+.|+.....|.++..++.. .+.++.|-.+.-....+.|.-..+|--++.+.++.+
T Consensus        12 ~~~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~-~~~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~g~~~   79 (96)
T cd02956          12 QVPVVVDFWAPRSPPSKELLPLLERLAEEYQG-QFVLAKVNCDAQPQIAQQFGVQALPTVYLFAAGQPV   79 (96)
T ss_pred             CCeEEEEEECCCChHHHHHHHHHHHHHHHhCC-cEEEEEEeccCCHHHHHHcCCCCCCEEEEEeCCEEe
Confidence            33455555669999999999999888777754 366667766555443444544566766666655443

Its gene has been sequenced from several gammaproteobacteria and actinobacteria.

>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein

Probab=95.26  E-value=0.049  Score=44.57  Aligned_cols=66  Identities=14%  Similarity=0.106  Sum_probs=42.6

Q ss_pred             CCEEEEeecCCCCcchHHHHHHHHhccchhhhcCCeEEEEecCC--hhhHHhhhcCCCCCceeEeccch
Q 015842          230 SPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLHEY--IESEVKDFWPRYWGGVVVYDQGM  296 (399)
Q Consensus       230 ~pvVLvFyRg~gCP~Cr~el~~L~e~~pef~alGV~LVaIspE~--~e~~ik~F~~~~l~f~VLsDp~r  296 (399)
                      +..+|+.|-..||+.|+.....+.++..++.. .+.++.|-.+.  .....+.|.-..+|--++.+++.
T Consensus        18 ~~~~lv~f~a~wC~~C~~~~~~~~~~a~~~~~-~~~~~~v~~~~~~~~~~~~~~~i~~~Pt~~~~~~~~   85 (109)
T cd03002          18 NYTTLVEFYAPWCGHCKNLKPEYAKAAKELDG-LVQVAAVDCDEDKNKPLCGKYGVQGFPTLKVFRPPK   85 (109)
T ss_pred             CCeEEEEEECCCCHHHHhhChHHHHHHHHhcC-CceEEEEecCccccHHHHHHcCCCcCCEEEEEeCCC
Confidence            44455556668999999988888877666643 47778887665  22223444435566666666665

MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.

>TIGR01126 pdi_dom protein disulfide-isomerase domain

Probab=95.23  E-value=0.028  Score=44.95  Aligned_cols=76  Identities=14%  Similarity=0.080  Sum_probs=45.1

Q ss_pred             hhhccCCCEEEEeecCCCCcchHHHHHHHHhccchhhhcC-CeEEEEecCChhhHHhhhcCCCCCceeEeccchHHH
Q 015842          224 LELWRESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALG-IQLFAVLHEYIESEVKDFWPRYWGGVVVYDQGMEFF  299 (399)
Q Consensus       224 sdL~~~~pvVLvFyRg~gCP~Cr~el~~L~e~~pef~alG-V~LVaIspE~~e~~ik~F~~~~l~f~VLsDp~r~lY  299 (399)
                      .+...+++++++.|--.||+.|+.....|.+....++..+ +.++.|-.+......+.|.-...|--++.+++...+
T Consensus         7 ~~~~~~~~~~~i~f~~~~C~~c~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~i~~~P~~~~~~~~~~~~   83 (102)
T TIGR01126         7 DDIVLSNKDVLVEFYAPWCGHCKNLAPEYEKLAKELKGDPDIVLAKVDATAEKDLASRFGVSGFPTIKFFPKGKKPV   83 (102)
T ss_pred             HHHhccCCcEEEEEECCCCHHHHhhChHHHHHHHHhccCCceEEEEEEccchHHHHHhCCCCcCCEEEEecCCCcce
Confidence            3444455666666677899999998777777666665443 555555444333223334334566556666666543

This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.

>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus

Probab=95.22  E-value=0.049  Score=44.86  Aligned_cols=64  Identities=13%  Similarity=0.107  Sum_probs=40.5

Q ss_pred             CCEEEEeecCCCCcchHHHHHHHHhccchhhhcC--CeEEEEecCChhhHHhhhcCCCCCceeEec
Q 015842          230 SPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALG--IQLFAVLHEYIESEVKDFWPRYWGGVVVYD  293 (399)
Q Consensus       230 ~pvVLvFyRg~gCP~Cr~el~~L~e~~pef~alG--V~LVaIspE~~e~~ik~F~~~~l~f~VLsD  293 (399)
                      +..++++|-..|||.|+.....|.+...+++..|  +.+..|-.+......+.|.-..+|--++.+
T Consensus        15 ~~~vlv~f~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~I~~~Pt~~l~~   80 (104)
T cd03000          15 EDIWLVDFYAPWCGHCKKLEPVWNEVGAELKSSGSPVRVGKLDATAYSSIASEFGVRGYPTIKLLK   80 (104)
T ss_pred             CCeEEEEEECCCCHHHHhhChHHHHHHHHHHhcCCcEEEEEEECccCHhHHhhcCCccccEEEEEc
Confidence            4467788889999999999999988877776554  445555544332223334323444444443

The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.

>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention

Probab=95.15  E-value=0.054  Score=44.82  Aligned_cols=39  Identities=8%  Similarity=0.050  Sum_probs=29.7

Q ss_pred             chhhccCCCEEEEeecCCCCcchHHHHHHHHhccchhhh
Q 015842          223 ALELWRESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDA  261 (399)
Q Consensus       223 LsdL~~~~pvVLvFyRg~gCP~Cr~el~~L~e~~pef~a  261 (399)
                      +.+..+..+.+|++|-..||+.|+.....+.+...+++.
T Consensus        11 f~~~i~~~~~vlv~F~a~wC~~C~~~~p~~~~~a~~~~~   49 (108)
T cd02996          11 IDDILQSAELVLVNFYADWCRFSQMLHPIFEEAAAKIKE   49 (108)
T ss_pred             HHHHHhcCCEEEEEEECCCCHHHHhhHHHHHHHHHHHhh
Confidence            345556666777778899999999999988877766643

It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.

>COG0526 TrxA Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]

Probab=95.12  E-value=0.02  Score=44.28  Aligned_cols=42  Identities=26%  Similarity=0.374  Sum_probs=33.4

Q ss_pred             CCCEEEEeecCCCCcchHHHHHHHHhccchhhhcCCeEEEEecC
Q 015842          229 ESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLHE  272 (399)
Q Consensus       229 ~~pvVLvFyRg~gCP~Cr~el~~L~e~~pef~alGV~LVaIspE  272 (399)
                      ++++++.|+ ..|||+|+.....|.+...++.. ++.++.|-..
T Consensus        32 ~~~~~v~f~-~~~C~~C~~~~~~l~~~~~~~~~-~~~~~~i~~~   73 (127)
T COG0526          32 GKPVLVDFW-APWCPPCRAEAPLLEELAEEYGG-DVEVVAVNVD   73 (127)
T ss_pred             CceEEEEEE-cCcCHHHHhhchhHHHHHHHhcC-CcEEEEEECC
Confidence            667888877 99999999998888887777765 5677777653

>PF00536 SAM_1: SAM domain (Sterile alpha motif); InterPro: IPR021129 The sterile alpha motif (SAM) domain is a putative protein interaction module present in a wide variety of proteins [] involved in many biological processes

Probab=95.11  E-value=0.011  Score=44.95  Aligned_cols=52  Identities=29%  Similarity=0.494  Sum_probs=46.7

Q ss_pred             HHHhhhccchhhhhhhHHHHHcCCChHHHhccCcccchhhhcccc-cccccccc
Q 015842           37 LEIRSYLHDRALMQYADIFEASGKSLPELLNLSTGDLSSQFGMKR-GHMARFKD   89 (399)
Q Consensus        37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~   89 (399)
                      =++..||..-+|=+|++.++..-.+...|+.++..||.. .|++. ||..|++.
T Consensus         6 ~~V~~WL~~~~l~~y~~~F~~~~i~g~~L~~lt~~dL~~-lgi~~~ghr~ki~~   58 (64)
T PF00536_consen    6 EDVSEWLKSLGLEQYAENFEKNYIDGEDLLSLTEEDLEE-LGITKLGHRKKILR   58 (64)
T ss_dssp             HHHHHHHHHTTGGGGHHHHHHTTSSHHHHTTSCHHHHHH-TT-SSHHHHHHHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHcCCchHHHHHhcCHHHHHH-cCCCCHHHHHHHHH
Confidence            468899999999999999988888999999999999999 99999 99988764

The SAM domain that spreads over around 70 residues is found in diverse eukaryotic organisms []. SAM domains have been shown to homo- and hetero-oligomerise, forming multiple self-association architectures and also binding to various non-SAM domain-containing proteins [], nevertheless with a low affinity constant []. SAM domains also appear to possess the ability to bind RNA []. Smaug, a protein that helps to establish a morphogen gradient in Drosophila embryos by repressing the translation of nanos (nos) mRNA, binds to the 3' untranslated region (UTR) of nos mRNA via two similar hairpin structures. The 3D crystal structure of the Smaug RNA-binding region shows a cluster of positively charged residues on the Smaug-SAM domain, which could be the RNA-binding surface. This electropositive potential is unique among all previously determined SAM-domain structures and is conserved among Smaug-SAM homologs. These results suggest that the SAM domain might have a primary role in RNA binding. Structural analyses show that the SAM domain is arranged in a small five-helix bundle with two large interfaces []. In the case of the SAM domain of EphB2, each of these interfaces is able to form dimers. The presence of these two distinct intermonomers binding surface suggest that SAM could form extended polymeric structures []. This entry represents type 1 SAM domains. ; PDB: 2KIV_A 3HIL_B 3KKA_A 3K1R_B 3SEN_B 3SEI_B 1V85_A 2KE7_A 2EAM_A 1WWV_A ....

>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes

Probab=95.09  E-value=0.02  Score=45.94  Aligned_cols=65  Identities=12%  Similarity=0.060  Sum_probs=39.7

Q ss_pred             CCEEEEeecCCCCcchHHHHHHHHhccchhhhcCCeEEEEecCChhhHHhhhcCCCCCceeEeccch
Q 015842          230 SPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLHEYIESEVKDFWPRYWGGVVVYDQGM  296 (399)
Q Consensus       230 ~pvVLvFyRg~gCP~Cr~el~~L~e~~pef~alGV~LVaIspE~~e~~ik~F~~~~l~f~VLsDp~r  296 (399)
                      +++||.|+ ..||+.|+.....|.++..++ ..++.++.|-.+......+.|.-..+|--++.+.++
T Consensus        15 ~~v~v~f~-~~~C~~C~~~~~~l~~l~~~~-~~~i~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~   79 (97)
T cd02984          15 KLLVLHFW-APWAEPCKQMNQVFEELAKEA-FPSVLFLSIEAEELPEISEKFEITAVPTFVFFRNGT   79 (97)
T ss_pred             CEEEEEEE-CCCCHHHHHHhHHHHHHHHHh-CCceEEEEEccccCHHHHHhcCCccccEEEEEECCE
Confidence            45555555 899999999988888776665 346677777544333323444434555444444444

PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.

>TIGR01068 thioredoxin thioredoxin

Probab=95.03  E-value=0.033  Score=44.20  Aligned_cols=68  Identities=13%  Similarity=0.178  Sum_probs=42.9

Q ss_pred             CCEEEEeecCCCCcchHHHHHHHHhccchhhhcCCeEEEEecCChhhHHhhhcCCCCCceeEeccchHHH
Q 015842          230 SPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLHEYIESEVKDFWPRYWGGVVVYDQGMEFF  299 (399)
Q Consensus       230 ~pvVLvFyRg~gCP~Cr~el~~L~e~~pef~alGV~LVaIspE~~e~~ik~F~~~~l~f~VLsDp~r~lY  299 (399)
                      +++||.|| ..||+.|+.....|.+...++.. .+.++.|-.+......+.|.-..+|--++.+.+...+
T Consensus        15 ~~vvi~f~-~~~C~~C~~~~~~l~~~~~~~~~-~~~~~~vd~~~~~~~~~~~~v~~~P~~~~~~~g~~~~   82 (101)
T TIGR01068        15 KPVLVDFW-APWCGPCKMIAPILEELAKEYEG-KVKFVKLNVDENPDIAAKYGIRSIPTLLLFKNGKEVD   82 (101)
T ss_pred             CcEEEEEE-CCCCHHHHHhCHHHHHHHHHhcC-CeEEEEEECCCCHHHHHHcCCCcCCEEEEEeCCcEee
Confidence            35665555 68999999999998887766642 4777777655444334455434555555555544333

Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.

>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative

Probab=95.00  E-value=0.024  Score=49.22  Aligned_cols=47  Identities=21%  Similarity=0.270  Sum_probs=35.4

Q ss_pred             chhhccCCCEEEEeecCCCCcchHHHHHHHHhccchhhhcCCeEEEEecC
Q 015842          223 ALELWRESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLHE  272 (399)
Q Consensus       223 LsdL~~~~pvVLvFyRg~gCP~Cr~el~~L~e~~pef~alGV~LVaIspE  272 (399)
                      +.+..+++..++++|-+.|||+|+...--|.+...+   .++.++-|--+
T Consensus        16 ~~~~i~~~~~~iv~f~~~~Cp~C~~~~P~l~~~~~~---~~~~~y~vdvd   62 (122)
T TIGR01295        16 ALEALDKKETATFFIGRKTCPYCRKFSGTLSGVVAQ---TKAPIYYIDSE   62 (122)
T ss_pred             HHHHHHcCCcEEEEEECCCChhHHHHhHHHHHHHHh---cCCcEEEEECC
Confidence            555667778888888899999999998888877655   34666666543

This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.

>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF

Probab=94.92  E-value=0.093  Score=51.69  Aligned_cols=50  Identities=14%  Similarity=0.101  Sum_probs=36.5

Q ss_pred             ceechhhccCCCEEEEeecCCCCcchHHHHHHHHhccchhhhcCCeEEEEecCCh
Q 015842          220 PMKALELWRESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLHEYI  274 (399)
Q Consensus       220 ~VsLsdL~~~~pvVLvFyRg~gCP~Cr~el~~L~e~~pef~alGV~LVaIspE~~  274 (399)
                      .-.+.+| ++.--+++||| ..||||..++--|+....+   .|+.+++||-+..
T Consensus       142 ~~~i~~l-a~~~gL~fFy~-~~C~~C~~~apil~~fa~~---ygi~v~~VS~DG~  191 (256)
T TIGR02739       142 EKAIQQL-SQSYGLFFFYR-GKSPISQKMAPVIQAFAKE---YGISVIPISVDGT  191 (256)
T ss_pred             HHHHHHH-HhceeEEEEEC-CCCchhHHHHHHHHHHHHH---hCCeEEEEecCCC
Confidence            3345565 34467888888 6799999988888766544   4999999997653

This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.

>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains

Probab=94.87  E-value=0.055  Score=44.14  Aligned_cols=50  Identities=16%  Similarity=0.076  Sum_probs=34.5

Q ss_pred             hhccCCCEEEEeecCCCCcchHHHHHHHHhccchhhhcCCeEEEEecCChh
Q 015842          225 ELWRESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLHEYIE  275 (399)
Q Consensus       225 dL~~~~pvVLvFyRg~gCP~Cr~el~~L~e~~pef~alGV~LVaIspE~~e  275 (399)
                      ....++..++++|-..||+.|+.....+.++..+++. .+.++.|-.+.-.
T Consensus        13 ~~v~~~~~~~v~f~a~wC~~C~~~~p~~~~~a~~~~~-~~~~~~vd~~~~~   62 (101)
T cd03003          13 AAVNSGEIWFVNFYSPRCSHCHDLAPTWREFAKEMDG-VIRIGAVNCGDDR   62 (101)
T ss_pred             HHhcCCCeEEEEEECCCChHHHHhHHHHHHHHHHhcC-ceEEEEEeCCccH
Confidence            3334444455555579999999999998887777754 3677777766543

This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.

>PRK13703 conjugal pilus assembly protein TraF; Provisional

Probab=94.83  E-value=0.11  Score=50.92  Aligned_cols=48  Identities=13%  Similarity=0.119  Sum_probs=36.2

Q ss_pred             echhhccCCCEEEEeecCCCCcchHHHHHHHHhccchhhhcCCeEEEEecCCh
Q 015842          222 KALELWRESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLHEYI  274 (399)
Q Consensus       222 sLsdL~~~~pvVLvFyRg~gCP~Cr~el~~L~e~~pef~alGV~LVaIspE~~  274 (399)
                      .+.+|- ++--+++||| ..||||..++--|+....+.   |..|++||-+..
T Consensus       137 ~i~~la-~~~GL~fFy~-s~Cp~C~~~aPil~~fa~~y---g~~v~~VS~DG~  184 (248)
T PRK13703        137 AIAKLA-EHYGLMFFYR-GQDPIDGQLAQVINDFRDTY---GLSVIPVSVDGV  184 (248)
T ss_pred             HHHHHH-hcceEEEEEC-CCCchhHHHHHHHHHHHHHh---CCeEEEEecCCC
Confidence            356653 4467888888 67999999998887765544   999999997643

>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5

Probab=94.41  E-value=0.097  Score=41.98  Aligned_cols=64  Identities=13%  Similarity=0.163  Sum_probs=40.3

Q ss_pred             CEEEEeecCCCCcchHHHHHHHHhccchhh-hcCCeEEEEecCC-hhhHHhhhcCCCCCceeEeccc
Q 015842          231 PAVLLCIRRPGCIMCRAEAHQLYAKKPIFD-ALGIQLFAVLHEY-IESEVKDFWPRYWGGVVVYDQG  295 (399)
Q Consensus       231 pvVLvFyRg~gCP~Cr~el~~L~e~~pef~-alGV~LVaIspE~-~e~~ik~F~~~~l~f~VLsDp~  295 (399)
                      ++||.|+ ..||+.|+.....+.++..+++ ..++.++.|-... .....+.|.-...|.-++.+++
T Consensus        20 ~~~v~f~-a~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~i~~~P~~~~~~~~   85 (105)
T cd02998          20 DVLVEFY-APWCGHCKNLAPEYEKLAAVFANEDDVVIAKVDADEANKDLAKKYGVSGFPTLKFFPKG   85 (105)
T ss_pred             cEEEEEE-CCCCHHHHhhChHHHHHHHHhCCCCCEEEEEEECCCcchhhHHhCCCCCcCEEEEEeCC
Confidence            5565555 8999999988888887776665 2346666666554 3333444443455655555555

The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER

>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain)

Probab=94.38  E-value=0.14  Score=41.23  Aligned_cols=63  Identities=16%  Similarity=0.173  Sum_probs=40.3

Q ss_pred             CEEEEeecCCCCcchHHHHHHHHhccchhhhcCCeEEEEecCChhhHHhhhcCCCCCceeEeccc
Q 015842          231 PAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLHEYIESEVKDFWPRYWGGVVVYDQG  295 (399)
Q Consensus       231 pvVLvFyRg~gCP~Cr~el~~L~e~~pef~alGV~LVaIspE~~e~~ik~F~~~~l~f~VLsDp~  295 (399)
                      +++|.|+ ..||+.|+.....+.+...++.. .+.++.|-.+......+.|.-...|--++.+.+
T Consensus        20 ~vlv~f~-a~~C~~C~~~~~~~~~~~~~~~~-~~~~~~id~~~~~~~~~~~~i~~~P~~~~~~~~   82 (103)
T cd03001          20 VWLVEFY-APWCGHCKNLAPEWKKAAKALKG-IVKVGAVDADVHQSLAQQYGVRGFPTIKVFGAG   82 (103)
T ss_pred             cEEEEEE-CCCCHHHHHHhHHHHHHHHHhcC-CceEEEEECcchHHHHHHCCCCccCEEEEECCC
Confidence            4666666 78999999998888776655543 466666765544433344433455555566655

Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.

>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1

Probab=94.23  E-value=0.13  Score=41.24  Aligned_cols=43  Identities=16%  Similarity=0.112  Sum_probs=31.7

Q ss_pred             CEEEEeecCCCCcchHHHHHHHHhccchhhh-cCCeEEEEecCC
Q 015842          231 PAVLLCIRRPGCIMCRAEAHQLYAKKPIFDA-LGIQLFAVLHEY  273 (399)
Q Consensus       231 pvVLvFyRg~gCP~Cr~el~~L~e~~pef~a-lGV~LVaIspE~  273 (399)
                      ..++++|-..||+.|+.....+.+....++. ..+.++.|-.+.
T Consensus        19 ~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~   62 (104)
T cd02995          19 KDVLVEFYAPWCGHCKALAPIYEELAEKLKGDDNVVIAKMDATA   62 (104)
T ss_pred             CcEEEEEECCCCHHHHHHhhHHHHHHHHhcCCCCEEEEEEeCcc
Confidence            4555666779999999999999888777765 356666666544

PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu

>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif

Probab=93.99  E-value=0.16  Score=42.10  Aligned_cols=42  Identities=7%  Similarity=-0.131  Sum_probs=32.3

Q ss_pred             CCEEEEeecCCCCcchHHHHHHHHhccchhhhcCCeEEEEecCC
Q 015842          230 SPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLHEY  273 (399)
Q Consensus       230 ~pvVLvFyRg~gCP~Cr~el~~L~e~~pef~alGV~LVaIspE~  273 (399)
                      ++.||+.|-..||+.|+.....|.++..++  .++.++.|..+.
T Consensus        15 ~k~vvv~F~a~wC~~C~~~~p~l~~la~~~--~~v~~~~vd~d~   56 (103)
T cd02985          15 GRLVVLEFALKHSGPSVKIYPTMVKLSRTC--NDVVFLLVNGDE   56 (103)
T ss_pred             CCEEEEEEECCCCHhHHHHhHHHHHHHHHC--CCCEEEEEECCC
Confidence            456666677889999999988888877666  467888887554

CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.

>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX

Probab=93.74  E-value=0.2  Score=40.67  Aligned_cols=62  Identities=15%  Similarity=0.078  Sum_probs=38.9

Q ss_pred             hhhccCCCEEEEeecCCCCcchHHHHHHHHhccchhhhcCCeEEEEecCChhhHHhhhcCCCCC
Q 015842          224 LELWRESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLHEYIESEVKDFWPRYWG  287 (399)
Q Consensus       224 sdL~~~~pvVLvFyRg~gCP~Cr~el~~L~e~~pef~alGV~LVaIspE~~e~~ik~F~~~~l~  287 (399)
                      .++.++ ++ |+.|-..||+.|+.....+.++...++..++.+..|-.+......+.|.-..+|
T Consensus        12 ~~~~~~-~~-lv~f~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~~~~~~~~~~~~i~~~P   73 (101)
T cd02994          12 TLVLEG-EW-MIEFYAPWCPACQQLQPEWEEFADWSDDLGINVAKVDVTQEPGLSGRFFVTALP   73 (101)
T ss_pred             HHHhCC-CE-EEEEECCCCHHHHHHhHHHHHHHHhhccCCeEEEEEEccCCHhHHHHcCCcccC
Confidence            344443 44 466667899999999999888776665556777777554433323344323334

TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.

>COG0386 BtuE Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones]

Probab=93.72  E-value=0.6  Score=43.12  Aligned_cols=73  Identities=12%  Similarity=0.127  Sum_probs=57.3

Q ss_pred             CCCceechhhccCCCEEEEeecCCCCcchHHHHHHHHhccchhhhcCCeEEEEe--------cCChhhHHhhhcC--CCC
Q 015842          217 KTPPMKALELWRESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVL--------HEYIESEVKDFWP--RYW  286 (399)
Q Consensus       217 ~G~~VsLsdL~~~~pvVLvFyRg~gCP~Cr~el~~L~e~~pef~alGV~LVaIs--------pE~~e~~ik~F~~--~~l  286 (399)
                      +|++++|++ |++ .|||+.=--.-|.|-- |...|..++..+++.|-.++++=        |++.+ +|+.|+.  -+.
T Consensus        14 ~G~~~~l~~-~~G-kVlLIVNtASkCGfTp-QYegLe~Ly~ky~~~Gf~VLgFPcNQF~~QEPg~~e-EI~~fC~~~YgV   89 (162)
T COG0386          14 DGEPVSLSD-YKG-KVLLIVNTASKCGFTP-QYEGLEALYKKYKDKGFEVLGFPCNQFGGQEPGSDE-EIAKFCQLNYGV   89 (162)
T ss_pred             CCCCccHHH-hCC-cEEEEEEcccccCCcH-hHHHHHHHHHHHhhCCcEEEeccccccccCCCCCHH-HHHHHHHhccCc
Confidence            599999999 454 6777777778898875 88999999999999999999884        34433 5999996  346


Q ss_pred             CceeEec
Q 015842          287 GGVVVYD  293 (399)
Q Consensus       287 ~f~VLsD  293 (399)
                      .||+++-
T Consensus        90 tFp~f~K   96 (162)
T COG0386          90 TFPMFSK   96 (162)
T ss_pred             eeeeeeE
Confidence            7887753

>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains

Probab=93.67  E-value=0.17  Score=41.28  Aligned_cols=67  Identities=16%  Similarity=0.174  Sum_probs=41.3

Q ss_pred             EEEEeecCCCCcchHHHHHHHHhccchhhhcCCeEEEEecCChhhHHhhhcCCCCCceeEeccc-hHHH
Q 015842          232 AVLLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLHEYIESEVKDFWPRYWGGVVVYDQG-MEFF  299 (399)
Q Consensus       232 vVLvFyRg~gCP~Cr~el~~L~e~~pef~alGV~LVaIspE~~e~~ik~F~~~~l~f~VLsDp~-r~lY  299 (399)
                      .+|+.|--.||+.|+.....+.++..++.. ++.++.|-.+......+.|.-..+|--++.+.+ ...+
T Consensus        21 ~v~v~f~a~wC~~C~~~~p~~~~~~~~~~~-~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~~~~~   88 (104)
T cd03004          21 PWLVDFYAPWCGPCQALLPELRKAARALKG-KVKVGSVDCQKYESLCQQANIRAYPTIRLYPGNASKYH   88 (104)
T ss_pred             eEEEEEECCCCHHHHHHHHHHHHHHHHhcC-CcEEEEEECCchHHHHHHcCCCcccEEEEEcCCCCCce
Confidence            445555568999999999999888777643 477777776654432344433444434444444 4433

This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.

>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox

Probab=93.25  E-value=0.22  Score=42.83  Aligned_cols=66  Identities=9%  Similarity=0.007  Sum_probs=42.6

Q ss_pred             ccCCCEEEEeecCCCCcchHHHHHHHHhccchhhhcCCeEEEEecCChhhHH-hhhc-CCCCCceeEec
Q 015842          227 WRESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLHEYIESEV-KDFW-PRYWGGVVVYD  293 (399)
Q Consensus       227 ~~~~pvVLvFyRg~gCP~Cr~el~~L~e~~pef~alGV~LVaIspE~~e~~i-k~F~-~~~l~f~VLsD  293 (399)
                      ..+.+.+|+.|-..||+.|+...-.+.++..+++.. +.++.|-.+...... +.|. ..+..+-+|-|
T Consensus        26 ~~~~~~vlV~FyA~WC~~Ck~l~p~~~~la~~~~~~-v~~~~Vd~d~~~~l~~~~~~I~~~PTl~lf~~   93 (113)
T cd03006          26 RTDAEVSLVMYYAPWDAQSQAARQEFEQVAQKLSDQ-VLFVAINCWWPQGKCRKQKHFFYFPVIHLYYR   93 (113)
T ss_pred             ccCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhcCC-eEEEEEECCCChHHHHHhcCCcccCEEEEEEC
Confidence            345556666667999999999988888877777542 677777666544333 2454 33444556654

ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.

>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A

Probab=92.91  E-value=0.19  Score=39.88  Aligned_cols=65  Identities=11%  Similarity=0.119  Sum_probs=40.2

Q ss_pred             cCCCEEEEeecCCCCcchHHHHHHHHhc--cchhhhcCCeEEEEecCChhhHHhhhcCCCCCceeEecc
Q 015842          228 RESPAVLLCIRRPGCIMCRAEAHQLYAK--KPIFDALGIQLFAVLHEYIESEVKDFWPRYWGGVVVYDQ  294 (399)
Q Consensus       228 ~~~pvVLvFyRg~gCP~Cr~el~~L~e~--~pef~alGV~LVaIspE~~e~~ik~F~~~~l~f~VLsDp  294 (399)
                      +++|++|.| ...||+.|+..-+.+.+.  ..++-..+.-+|-|-.+..+... .+...++|.-++.||
T Consensus        16 ~~kpvlv~f-~a~wC~~C~~l~~~~~~~~~v~~~~~~~fv~v~vd~~~~~~~~-~~~~~~~P~~~~ldp   82 (82)
T PF13899_consen   16 EGKPVLVDF-GADWCPPCKKLEREVFSDPEVQEALNKNFVLVKVDVDDEDPNA-QFDRQGYPTFFFLDP   82 (82)
T ss_dssp             HTSEEEEEE-ETTTTHHHHHHHHHTTTSHHHHHHHHHCSEEEEEETTTHHHHH-HHHHCSSSEEEEEET
T ss_pred             cCCCEEEEE-ECCCCHhHHHHHHHHcCCHHHHHHHHCCEEEEEEEcCCCChhH-HhCCccCCEEEEeCC
Confidence            345666555 689999999998887543  22212246666666655554322 232357787788876

...

>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library

Probab=92.90  E-value=0.14  Score=46.44  Aligned_cols=52  Identities=8%  Similarity=-0.044  Sum_probs=38.2

Q ss_pred             CEEEEeecCCCCcchHHHHHHHHhccchhhhcCCeEEEEecCChhhHHhhhc
Q 015842          231 PAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLHEYIESEVKDFW  282 (399)
Q Consensus       231 pvVLvFyRg~gCP~Cr~el~~L~e~~pef~alGV~LVaIspE~~e~~ik~F~  282 (399)
                      ..+|+.|-..||+.|+.....|.++..++...+++++.|-.+......+.|.
T Consensus        48 ~~vvV~Fya~wC~~Ck~l~p~l~~la~~~~~~~v~f~~VDvd~~~~la~~~~   99 (152)
T cd02962          48 VTWLVEFFTTWSPECVNFAPVFAELSLKYNNNNLKFGKIDIGRFPNVAEKFR   99 (152)
T ss_pred             CEEEEEEECCCCHHHHHHHHHHHHHHHHcccCCeEEEEEECCCCHHHHHHcC
Confidence            4555566667999999999999988877766678889988665544344444

It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.

>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic

Probab=92.29  E-value=0.25  Score=50.19  Aligned_cols=65  Identities=15%  Similarity=0.125  Sum_probs=44.6

Q ss_pred             chhhccCCCEEEEeecCCCCcchHHHHHHHHhccchhhhcC--CeEEEEecCChhhHHhhhcCCCCC
Q 015842          223 ALELWRESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALG--IQLFAVLHEYIESEVKDFWPRYWG  287 (399)
Q Consensus       223 LsdL~~~~pvVLvFyRg~gCP~Cr~el~~L~e~~pef~alG--V~LVaIspE~~e~~ik~F~~~~l~  287 (399)
                      +.++.++++.++++|-..||+.|+.....+.++...+++.+  +.++.|-++.-....+.|.-..+|
T Consensus        11 ~~~~i~~~~~~~v~f~a~wC~~c~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P   77 (462)
T TIGR01130        11 FDDFIKSHEFVLVEFYAPWCGHCKSLAPEYEKAADELKKKGPPIKLAKVDATEEKDLAQKYGVSGYP   77 (462)
T ss_pred             HHHHHhcCCCEEEEEECCCCHHHHhhhHHHHHHHHHHhhcCCceEEEEEECCCcHHHHHhCCCcccc
Confidence            44555666667777778999999999999988877787766  777777665543323344323444

Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).

>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding

Probab=92.22  E-value=0.46  Score=40.38  Aligned_cols=66  Identities=9%  Similarity=0.157  Sum_probs=38.3

Q ss_pred             cCCCEEEEeecCCCCcchHHHHHHHHhccchhhhcCCeEEEEecCChhhHHhhhcCCCCCceeEeccc
Q 015842          228 RESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLHEYIESEVKDFWPRYWGGVVVYDQG  295 (399)
Q Consensus       228 ~~~pvVLvFyRg~gCP~Cr~el~~L~e~~pef~alGV~LVaIspE~~e~~ik~F~~~~l~f~VLsDp~  295 (399)
                      .+...|++||--.|||+|+....-|.+...+.  -.++++.|--+........|.-...|.-++.+.+
T Consensus        20 ~~~~~vvv~f~a~wC~~C~~~~~~l~~la~~~--~~i~~~~vd~d~~~~l~~~~~v~~vPt~~i~~~g   85 (113)
T cd02975          20 KNPVDLVVFSSKEGCQYCEVTKQLLEELSELS--DKLKLEIYDFDEDKEKAEKYGVERVPTTIFLQDG   85 (113)
T ss_pred             CCCeEEEEEeCCCCCCChHHHHHHHHHHHHhc--CceEEEEEeCCcCHHHHHHcCCCcCCEEEEEeCC
Confidence            33334667777889999997777776655443  2356666654443333344432445555555443

PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.

>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1

Probab=92.08  E-value=0.16  Score=44.42  Aligned_cols=42  Identities=10%  Similarity=0.015  Sum_probs=30.4

Q ss_pred             CCCEEEEeecC------CCCcchHHHHHHHHhccchhhhcCCeEEEEec
Q 015842          229 ESPAVLLCIRR------PGCIMCRAEAHQLYAKKPIFDALGIQLFAVLH  271 (399)
Q Consensus       229 ~~pvVLvFyRg------~gCP~Cr~el~~L~e~~pef~alGV~LVaIsp  271 (399)
                      ++|+||.|+-.      .|||.|+...-.|.++..++. .++.++-|--
T Consensus        21 ~~~vvV~F~A~~~~~~~~WC~pCr~~~P~l~~l~~~~~-~~v~fv~Vdv   68 (119)
T cd02952          21 GKPIFILFYGDKDPDGQSWCPDCVKAEPVVREALKAAP-EDCVFIYCDV   68 (119)
T ss_pred             CCeEEEEEEccCCCCCCCCCHhHHhhchhHHHHHHHCC-CCCEEEEEEc
Confidence            46777777765      999999998888877766654 2466666653

TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.

>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1

Probab=91.92  E-value=0.38  Score=37.15  Aligned_cols=39  Identities=10%  Similarity=0.143  Sum_probs=28.1

Q ss_pred             EEEeecCCCCcchHHHHHHHHhccchhhhcCCeEEEEecC
Q 015842          233 VLLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLHE  272 (399)
Q Consensus       233 VLvFyRg~gCP~Cr~el~~L~e~~pef~alGV~LVaIspE  272 (399)
                      .|.+|-..|||+|......|.++..++.. .+.++-|--+
T Consensus         2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~-~~~~~~vd~~   40 (82)
T TIGR00411         2 KIELFTSPTCPYCPAAKRVVEEVAKEMGD-AVEVEYINVM   40 (82)
T ss_pred             EEEEEECCCCcchHHHHHHHHHHHHHhcC-ceEEEEEeCc
Confidence            45566679999999999999887666542 2666666543

This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.

>PF07647 SAM_2: SAM domain (Sterile alpha motif); InterPro: IPR011510 The sterile alpha motif (SAM) domain is a putative protein interaction module present in a wide variety of proteins [] involved in many biological processes

Probab=91.87  E-value=0.064  Score=40.91  Aligned_cols=51  Identities=31%  Similarity=0.574  Sum_probs=45.8

Q ss_pred             HHhhhccchhhhhhhHHHHHcCCCh-HHHhccCcccchhhhcc-cccccccccc
Q 015842           38 EIRSYLHDRALMQYADIFEASGKSL-PELLNLSTGDLSSQFGM-KRGHMARFKD   89 (399)
Q Consensus        38 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~~~~   89 (399)
                      ++..||...||=+|++.++..|.+. ..|..++..+|- +.|+ ..||..+++.
T Consensus         8 ~v~~WL~~~gl~~y~~~f~~~~i~g~~~L~~l~~~~L~-~lGI~~~~~r~kll~   60 (66)
T PF07647_consen    8 DVAEWLKSLGLEQYADNFRENGIDGLEDLLQLTEEDLK-ELGITNLGHRRKLLS   60 (66)
T ss_dssp             HHHHHHHHTTCGGGHHHHHHTTCSHHHHHTTSCHHHHH-HTTTTHHHHHHHHHH
T ss_pred             HHHHHHHHCCcHHHHHHHHHcCCcHHHHHhhCCHHHHH-HcCCCCHHHHHHHHH
Confidence            5678999999999999999999999 999999999996 9999 7788776654

The SAM domain that spreads over around 70 residues is found in diverse eukaryotic organisms []. SAM domains have been shown to homo- and hetero-oligomerise, forming multiple self-association architectures and also binding to various non-SAM domain-containing proteins [], nevertheless with a low affinity constant []. SAM domains also appear to possess the ability to bind RNA []. Smaug, a protein that helps to establish a morphogen gradient in Drosophila embryos by repressing the translation of nanos (nos) mRNA, binds to the 3' untranslated region (UTR) of nos mRNA via two similar hairpin structures. The 3D crystal structure of the Smaug RNA-binding region shows a cluster of positively charged residues on the Smaug-SAM domain, which could be the RNA-binding surface. This electropositive potential is unique among all previously determined SAM-domain structures and is conserved among Smaug-SAM homologs. These results suggest that the SAM domain might have a primary role in RNA binding. Structural analyses show that the SAM domain is arranged in a small five-helix bundle with two large interfaces []. In the case of the SAM domain of EphB2, each of these interfaces is able to form dimers. The presence of these two distinct intermonomers binding surface suggest that SAM could form extended polymeric structures []. This entry represents a second domain related to the SAM domain. ; GO: 0005515 protein binding; PDB: 1B0X_A 1X9X_B 1OW5_A 1V38_A 3BS7_A 3BS5_A 3TAD_A 3TAC_B 2K60_A 2DL0_A ....

>PTZ00102 disulphide isomerase; Provisional

Probab=91.53  E-value=0.35  Score=49.88  Aligned_cols=74  Identities=18%  Similarity=0.183  Sum_probs=45.9

Q ss_pred             chhhccCCCEEEEeecCCCCcchHHHHHHHHhccchhhhcC--CeEEEEecCChhhHHhhhcCCCCCceeEeccch
Q 015842          223 ALELWRESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALG--IQLFAVLHEYIESEVKDFWPRYWGGVVVYDQGM  296 (399)
Q Consensus       223 LsdL~~~~pvVLvFyRg~gCP~Cr~el~~L~e~~pef~alG--V~LVaIspE~~e~~ik~F~~~~l~f~VLsDp~r  296 (399)
                      +.++..+++.++++|-..||+.|+..+..+.++...++..+  +.++-|-+..-....+.|.-...|--++.+.+.
T Consensus        42 f~~~i~~~~~~lv~f~a~wC~~Ck~~~p~~~~~a~~~~~~~~~i~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~g~  117 (477)
T PTZ00102         42 FDKFITENEIVLVKFYAPWCGHCKRLAPEYKKAAKMLKEKKSEIVLASVDATEEMELAQEFGVRGYPTIKFFNKGN  117 (477)
T ss_pred             HHHHHhcCCcEEEEEECCCCHHHHHhhHHHHHHHHHHHhcCCcEEEEEEECCCCHHHHHhcCCCcccEEEEEECCc
Confidence            34555666667777778999999999988888777776654  555556554433333444433444333344443

>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif

Probab=91.51  E-value=0.35  Score=42.43  Aligned_cols=77  Identities=18%  Similarity=0.268  Sum_probs=39.4

Q ss_pred             hhccCCCEEEEeecCCCCcchHHHHHHHHhccchhhhcCCeEEEEe--cCChhhHHhh--------hcCCCCCceeEecc
Q 015842          225 ELWRESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVL--HEYIESEVKD--------FWPRYWGGVVVYDQ  294 (399)
Q Consensus       225 dL~~~~pvVLvFyRg~gCP~Cr~el~~L~e~~pef~alGV~LVaIs--pE~~e~~ik~--------F~~~~l~f~VLsDp  294 (399)
                      ..-++++-|+++|-..||+.|+..-...-....-.+.++-..|.|-  .+......+.        |...++|.-|+.||
T Consensus        10 ~Ak~~~KpVll~f~a~WC~~Ck~me~~~f~~~~V~~~l~~~fv~VkvD~~~~~~~~~~~~~~~~~~~~~~G~Pt~vfl~~   89 (124)
T cd02955          10 KARREDKPIFLSIGYSTCHWCHVMEHESFEDEEVAAILNENFVPIKVDREERPDVDKIYMNAAQAMTGQGGWPLNVFLTP   89 (124)
T ss_pred             HHHHcCCeEEEEEccCCCHhHHHHHHHccCCHHHHHHHhCCEEEEEEeCCcCcHHHHHHHHHHHHhcCCCCCCEEEEECC
Confidence            3334444455667889999999776643221111112222444443  2221111111        22357898999999


Q ss_pred             chH-HHHH
Q 015842          295 GME-FFKA  301 (399)
Q Consensus       295 ~r~-lYka  301 (399)
                      +.+ +|..
T Consensus        90 ~G~~~~~~   97 (124)
T cd02955          90 DLKPFFGG   97 (124)
T ss_pred             CCCEEeee
Confidence            854 4443

The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.

>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein

Probab=91.08  E-value=0.56  Score=39.82  Aligned_cols=40  Identities=23%  Similarity=0.120  Sum_probs=28.3

Q ss_pred             CEEEEeecCCCCcchHHHHHHHHhccchhhhc-C-CeEEEEe
Q 015842          231 PAVLLCIRRPGCIMCRAEAHQLYAKKPIFDAL-G-IQLFAVL  270 (399)
Q Consensus       231 pvVLvFyRg~gCP~Cr~el~~L~e~~pef~al-G-V~LVaIs  270 (399)
                      ..||+.|-..||+.|+.....+.++..+++.. + +.+..|-
T Consensus        20 ~~vvV~f~a~wC~~C~~~~~~~~~la~~~~~~~~~v~~~~vd   61 (114)
T cd02992          20 SAWLVEFYASWCGHCRAFAPTWKKLARDLRKWRPVVRVAAVD   61 (114)
T ss_pred             CeEEEEEECCCCHHHHHHhHHHHHHHHHHHhcCCceEEEEEe
Confidence            35555566899999999999998887777542 2 4554454

QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.

>PTZ00443 Thioredoxin domain-containing protein; Provisional

Probab=90.42  E-value=0.62  Score=44.98  Aligned_cols=65  Identities=15%  Similarity=0.221  Sum_probs=39.1

Q ss_pred             CCCEEEEeecCCCCcchHHHHHHHHhccchhhhcCCeEEEEecCChhhHHhhhcCCCCCceeEeccc
Q 015842          229 ESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLHEYIESEVKDFWPRYWGGVVVYDQG  295 (399)
Q Consensus       229 ~~pvVLvFyRg~gCP~Cr~el~~L~e~~pef~alGV~LVaIspE~~e~~ik~F~~~~l~f~VLsDp~  295 (399)
                      +++++|.|| -.||+.|+.....+.++..+++. .+.+..|-.+......+.|.-..+|--++.+.+
T Consensus        52 ~~~vlV~Fy-ApWC~~Ck~~~P~~e~la~~~~~-~v~~~~VD~~~~~~l~~~~~I~~~PTl~~f~~G  116 (224)
T PTZ00443         52 TGPWFVKFY-APWCSHCRKMAPAWERLAKALKG-QVNVADLDATRALNLAKRFAIKGYPTLLLFDKG  116 (224)
T ss_pred             CCCEEEEEE-CCCChHHHHHHHHHHHHHHHcCC-CeEEEEecCcccHHHHHHcCCCcCCEEEEEECC
Confidence            356766665 69999999998888877666643 244544544333333444443455555555544

>cd02958 UAS UAS family; UAS is a domain of unknown function

Probab=90.36  E-value=0.44  Score=40.02  Aligned_cols=65  Identities=9%  Similarity=0.135  Sum_probs=40.3

Q ss_pred             cCCCEEEEeecCCCCcchHHHHHHHHhc---cchhhhcCCeEEEEec--CChhh--HHhhhcCCCCCceeEeccc
Q 015842          228 RESPAVLLCIRRPGCIMCRAEAHQLYAK---KPIFDALGIQLFAVLH--EYIES--EVKDFWPRYWGGVVVYDQG  295 (399)
Q Consensus       228 ~~~pvVLvFyRg~gCP~Cr~el~~L~e~---~pef~alGV~LVaIsp--E~~e~--~ik~F~~~~l~f~VLsDp~  295 (399)
                      ++++.|++++...||++|+...+..-..   ...+++   +.|.+..  .+++.  ....|....+|.-++.|+.
T Consensus        15 ~~~K~llv~~~~~~c~~c~~~~~~vl~~~~v~~~l~~---~~v~~~~d~~~~e~~~~~~~~~~~~~P~~~~i~~~   86 (114)
T cd02958          15 SEKKWLLVYLQSEDEFDSQVLNRDLWSNESVKEFIRE---NFIFWQCDIDSSEGQRFLQSYKVDKYPHIAIIDPR   86 (114)
T ss_pred             hhCceEEEEEecCCcchHHHHHHHHcCCHHHHHHHHh---CEEEEEecCCCccHHHHHHHhCccCCCeEEEEeCc
Confidence            4567888999999999999988865432   233433   4444442  22221  1222323578888999993

Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),

>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif

Probab=90.18  E-value=0.34  Score=41.24  Aligned_cols=78  Identities=17%  Similarity=0.189  Sum_probs=49.0

Q ss_pred             hhccCCCEEEEeecCCCCcchHHHHHHHHhccchhhhcCCeEEEEecCChhhHHhhhcCCCCCceeEeccchHHHHHhCC
Q 015842          225 ELWRESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLHEYIESEVKDFWPRYWGGVVVYDQGMEFFKALGG  304 (399)
Q Consensus       225 dL~~~~pvVLvFyRg~gCP~Cr~el~~L~e~~pef~alGV~LVaIspE~~e~~ik~F~~~~l~f~VLsDp~r~lYkaLGl  304 (399)
                      +...+...||+.|-..||+-|+.....|.++..++  .+++++-|-.+......++|.-..+|--++...+..+.+.-|.
T Consensus        17 ~~i~~~~~vvV~f~a~~c~~C~~~~p~l~~la~~~--~~i~f~~Vd~~~~~~l~~~~~v~~vPt~l~fk~G~~v~~~~g~   94 (113)
T cd02989          17 EIVKSSERVVCHFYHPEFFRCKIMDKHLEILAKKH--LETKFIKVNAEKAPFLVEKLNIKVLPTVILFKNGKTVDRIVGF   94 (113)
T ss_pred             HHHhCCCcEEEEEECCCCccHHHHHHHHHHHHHHc--CCCEEEEEEcccCHHHHHHCCCccCCEEEEEECCEEEEEEECc
Confidence            33444455666777899999998888777765544  3577877776655443455544556655666555555544444

The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.

>PF04592 SelP_N: Selenoprotein P, N terminal region; InterPro: IPR007671 SelP is the only known eukaryotic selenoprotein that contains multiple selenocysteine (Sec) residues, and accounts for more than 50% of the selenium content of rat and human plasma []

Probab=89.43  E-value=0.63  Score=45.50  Aligned_cols=77  Identities=18%  Similarity=0.276  Sum_probs=55.3

Q ss_pred             CCEEEEeecCCCCcchHHHHHHHHhccchhhhcCC---eEEEEecCChhhHHhh-hcCCCCC--ceeEe--ccchHHHHH
Q 015842          230 SPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALGI---QLFAVLHEYIESEVKD-FWPRYWG--GVVVY--DQGMEFFKA  301 (399)
Q Consensus       230 ~pvVLvFyRg~gCP~Cr~el~~L~e~~pef~alGV---~LVaIspE~~e~~ik~-F~~~~l~--f~VLs--Dp~r~lYka  301 (399)
                      |.|+|+.+=-.+|.+|..++..|.++...|+..|.   ..++|.+....+.+.. ..++..+  ++||-  +.+..++..
T Consensus        26 G~VtvVALL~asc~~c~~qa~~le~Lr~kL~~~g~~~I~f~vVN~~~~~s~~~~~~l~~r~~~~ipVyqq~~~q~dvW~~  105 (238)
T PF04592_consen   26 GHVTVVALLQASCYFCLLQASRLEDLREKLENEGLSNISFMVVNHQGEHSRLKYWELKRRVSEHIPVYQQDENQPDVWEL  105 (238)
T ss_pred             CcEEeeeehhhhhHHHHHHHHHHHHHHHHHHHCCCCceEEEEEcCCCcchhHHHHHHHHhCCCCCceecCCccccCHHHH
Confidence            46666666667999999999999999988887765   6777776655432221 1124455  89996  466899999


Q ss_pred             hCCCc
Q 015842          302 LGGGK  306 (399)
Q Consensus       302 LGl~r  306 (399)
                      |+..+
T Consensus       106 L~G~k  110 (238)
T PF04592_consen  106 LNGSK  110 (238)
T ss_pred             hCCCc
Confidence            98875

It is thought to be glycosylated []. SelP may have antioxidant properties. It can attach to epithelial cells, and may protect vascular endothelial cells against peroxynitrite toxicity []. The high selenium content of SelP suggests that it may be involved in selenium intercellular transport or storage []. The promoter structure of bovine SelP suggests that it may be involved in countering heavy metal intoxication, and may also have a developmental function []. The N-terminal region of SelP can exist independently of the C-terminal region. Zebrafish selenoprotein Pb (Q98SV0 from SWISSPROT) lacks the C-terminal Sec-rich region, and a protein encoded by the rat SelP gene and lacking this region has also been reported []. The N-terminal region contains a conserved SecxxCys motif, which is similar to the CysxxCys found in thioredoxins. It is speculated that the N-terminal region may adopt a thioredoxin fold and catalyse redox reactions []. The N-terminal region also contains a His-rich region, which is thought to mediate heparin binding. Binding to heparan proteoglycans could account for the membrane binding properties of SelP []. The function of the bacterial members of this family is uncharacterised.; GO: 0008430 selenium binding

>smart00454 SAM Sterile alpha motif

Probab=89.10  E-value=0.22  Score=37.16  Aligned_cols=52  Identities=29%  Similarity=0.412  Sum_probs=44.2

Q ss_pred             HHHhhhccchhhhhhhHHHHHcCCChHHHhccCcccchhhhcc-ccccccccc
Q 015842           37 LEIRSYLHDRALMQYADIFEASGKSLPELLNLSTGDLSSQFGM-KRGHMARFK   88 (399)
Q Consensus        37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~   88 (399)
                      -++..||..-|+-+|++.+...|.+..+|+.++..+.-.+.|+ ..||-.+.+
T Consensus         7 ~~v~~wL~~~g~~~y~~~f~~~~i~g~~ll~~~~~~~l~~lgi~~~~~r~~ll   59 (68)
T smart00454        7 ESVADWLESIGLEQYADNFRKNGIDGALLLLLTSEEDLKELGITKLGHRKKIL   59 (68)
T ss_pred             HHHHHHHHHCChHHHHHHHHHCCCCHHHHHhcChHHHHHHcCCCcHHHHHHHH
Confidence            4678899999999999999999999999999995555577999 568877654

Widespread domain in signalling and nuclear proteins. In EPH-related tyrosine kinases, appears to mediate cell-cell initiated signal transduction via the binding of SH2-containing proteins to a conserved tyrosine that is phosphorylated. In many cases mediates homodimerisation.

>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family

Probab=88.69  E-value=1.5  Score=32.38  Aligned_cols=31  Identities=19%  Similarity=0.297  Sum_probs=22.1

Q ss_pred             EEeecCCCCcchHHHHHHHHhccchhhhcCCeEEEEec
Q 015842          234 LLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLH  271 (399)
Q Consensus       234 LvFyRg~gCP~Cr~el~~L~e~~pef~alGV~LVaIsp  271 (399)
                      |.+|-..|||+|+.....|.+       .|+....|-.
T Consensus         2 i~lf~~~~C~~C~~~~~~l~~-------~~i~~~~vdi   32 (74)
T TIGR02196         2 VKVYTTPWCPPCKKAKEYLTS-------KGIAFEEIDV   32 (74)
T ss_pred             EEEEcCCCChhHHHHHHHHHH-------CCCeEEEEec
Confidence            568889999999987655543       5666666543

This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.

>cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus

Probab=88.32  E-value=0.53  Score=42.00  Aligned_cols=74  Identities=11%  Similarity=0.158  Sum_probs=41.3

Q ss_pred             cCCCEEEEeecCCCCcchHHHHHHHHhccchhhhcCCeEEEEe--cCChhhHHhhhcCCCCCceeEeccchHHHHHh
Q 015842          228 RESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVL--HEYIESEVKDFWPRYWGGVVVYDQGMEFFKAL  302 (399)
Q Consensus       228 ~~~pvVLvFyRg~gCP~Cr~el~~L~e~~pef~alGV~LVaIs--pE~~e~~ik~F~~~~l~f~VLsDp~r~lYkaL  302 (399)
                      ++++.|+++|-..|||+|+..-...-+...-.+.+.=..|+|.  .+..+...... ..+.|--+|.|++.++-..+
T Consensus        21 ~~~Kpvmv~f~sdwC~~Ck~l~k~~f~~~eV~~~l~~~Fv~V~l~~d~td~~~~~~-g~~vPtivFld~~g~vi~~i   96 (130)
T cd02960          21 KSNKPLMVIHHLEDCPHSQALKKAFAEHKEIQKLAQEDFIMLNLVHETTDKNLSPD-GQYVPRIMFVDPSLTVRADI   96 (130)
T ss_pred             HCCCeEEEEEeCCcCHhHHHHHHHhhCCHHHHHHHHhCeEEEEEEeccCCCCcCcc-CcccCeEEEECCCCCCcccc
Confidence            4444455667789999999988887543322222222445443  22221101111 14677789999997665544

They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19.

>PF13778 DUF4174: Domain of unknown function (DUF4174)

Probab=88.24  E-value=3.9  Score=35.49  Aligned_cols=109  Identities=11%  Similarity=0.134  Sum_probs=71.8

Q ss_pred             ccCCCEEEEeecCCCCcchHHHHHHHHhccchhhhcCCeEEEEecCChhhHHhhhcCCCCCceeEeccchHHHHHhCCCc
Q 015842          227 WRESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLHEYIESEVKDFWPRYWGGVVVYDQGMEFFKALGGGK  306 (399)
Q Consensus       227 ~~~~pvVLvFyRg~gCP~Cr~el~~L~e~~pef~alGV~LVaIspE~~e~~ik~F~~~~l~f~VLsDp~r~lYkaLGl~r  306 (399)
                      |++ ++||+|-...--+.=..+...|.+....|.+..+.++.|.......       .+  ..+=.+....+++.|++. 
T Consensus         8 w~~-R~lvv~aps~~d~~~~~q~~~L~~~~~~l~eRdi~v~~i~~~~~~~-------~~--~~~~~~~~~~lr~~l~~~-   76 (118)
T PF13778_consen    8 WKN-RLLVVFAPSADDPRYQQQLEELQNNRCGLDERDIVVIVITGDGARS-------PG--KPLSPEDIQALRKRLRIP-   76 (118)
T ss_pred             CcC-ceEEEECCCCCCHHHHHHHHHHHhhhhccccCceEEEEEeCCcccc-------cc--CcCCHHHHHHHHHHhCCC-
Confidence            554 5677888888888889999999999999999999888887544321       11  000001112233322221 


Q ss_pred             ccccccccccccCHHHHHHHHHHHhcCCccccCCCCcccceEEEEecCCCcEEEEEecCCCCCCCCHHHHHHHHHhhhhh
Q 015842          307 LLKDKFLSGFLLNPRAIANYKRARTLGVEQNFKGEGEIKGGLFIVGRGRSGIAYQFIERNFGDWAPLAEVIEICTQLQDQ  386 (399)
Q Consensus       307 ~~r~s~lsgfl~~P~v~~~~~rA~~~G~~gn~~GD~~qLGGtFVId~gGg~I~yah~d~d~gDrad~eeVLaAl~~l~~~  386 (399)
                                                       .++   -.+++||+|| ++...     +...+++++|.+.++++.-.
T Consensus        77 ---------------------------------~~~---f~~vLiGKDG-~vK~r-----~~~p~~~~~lf~~ID~MPmR  114 (118)
T PF13778_consen   77 ---------------------------------PGG---FTVVLIGKDG-GVKLR-----WPEPIDPEELFDTIDAMPMR  114 (118)
T ss_pred             ---------------------------------CCc---eEEEEEeCCC-cEEEe-----cCCCCCHHHHHHHHhCCccc
Confidence                                             111   2689999997 67776     55568999999999987544


Q ss_pred             hc
Q 015842          387 QR  388 (399)
Q Consensus       387 ~~  388 (399)
                      |+
T Consensus       115 q~  116 (118)
T PF13778_consen  115 QQ  116 (118)
T ss_pred             hh
Confidence            43

>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)

Probab=88.16  E-value=1.5  Score=32.90  Aligned_cols=34  Identities=12%  Similarity=0.218  Sum_probs=21.4

Q ss_pred             EEeecCCCCcchHHHHHHHHhccchhhhcCCeEEEE
Q 015842          234 LLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAV  269 (399)
Q Consensus       234 LvFyRg~gCP~Cr~el~~L~e~~pef~alGV~LVaI  269 (399)
                      |.+|-..|||+|......|.++...  ..++.+.-|
T Consensus         3 v~~f~~~~C~~C~~~~~~l~~l~~~--~~~i~~~~i   36 (67)
T cd02973           3 IEVFVSPTCPYCPDAVQAANRIAAL--NPNISAEMI   36 (67)
T ss_pred             EEEEECCCCCCcHHHHHHHHHHHHh--CCceEEEEE
Confidence            4566678999998777766655322  124555555

All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri

>PHA02278 thioredoxin-like protein

Probab=87.68  E-value=1.6  Score=36.87  Aligned_cols=49  Identities=12%  Similarity=0.145  Sum_probs=31.3

Q ss_pred             chhhccCCCEEEEeecCCCCcchHHHHHHHHhccchhhhcCCeEEEEecC
Q 015842          223 ALELWRESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLHE  272 (399)
Q Consensus       223 LsdL~~~~pvVLvFyRg~gCP~Cr~el~~L~e~~pef~alGV~LVaIspE  272 (399)
                      +.+...++..||+.|.-.||+.|+.....|.++..+.. ..++++-|--+
T Consensus         7 ~~~~i~~~~~vvV~F~A~WCgpCk~m~p~l~~l~~~~~-~~~~~~~vdvd   55 (103)
T PHA02278          7 LNTAIRQKKDVIVMITQDNCGKCEILKSVIPMFQESGD-IKKPILTLNLD   55 (103)
T ss_pred             HHHHHhCCCcEEEEEECCCCHHHHhHHHHHHHHHhhhc-CCceEEEEECC
Confidence            34444555566677788999999999888877654422 12455555433

>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides

Probab=87.54  E-value=1.4  Score=36.15  Aligned_cols=43  Identities=12%  Similarity=0.084  Sum_probs=30.1

Q ss_pred             CCCEEEEeecCCCCcchHHHHHHHHhccchhhhcCCeEEEEecCC
Q 015842          229 ESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLHEY  273 (399)
Q Consensus       229 ~~pvVLvFyRg~gCP~Cr~el~~L~e~~pef~alGV~LVaIspE~  273 (399)
                      ++|+-|.+|-..|||+|..-..-+.++..+..  ++++..|--+.
T Consensus        11 ~~pv~i~~F~~~~C~~C~~~~~~~~~l~~~~~--~i~~~~vd~~~   53 (89)
T cd03026          11 NGPINFETYVSLSCHNCPDVVQALNLMAVLNP--NIEHEMIDGAL   53 (89)
T ss_pred             CCCEEEEEEECCCCCCcHHHHHHHHHHHHHCC--CceEEEEEhHh
Confidence            46999999999999999987766665543332  46666665433

AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.

>smart00594 UAS UAS domain

Probab=87.46  E-value=1  Score=38.63  Aligned_cols=67  Identities=9%  Similarity=0.042  Sum_probs=42.6

Q ss_pred             ccCCCEEEEeecCCCCcchHHHHHHHHhc---cchhhhcCCeEEEEe--cCChhh--HHhhhcCCCCCceeEeccch
Q 015842          227 WRESPAVLLCIRRPGCIMCRAEAHQLYAK---KPIFDALGIQLFAVL--HEYIES--EVKDFWPRYWGGVVVYDQGM  296 (399)
Q Consensus       227 ~~~~pvVLvFyRg~gCP~Cr~el~~L~e~---~pef~alGV~LVaIs--pE~~e~--~ik~F~~~~l~f~VLsDp~r  296 (399)
                      -++++.+++++...||+.|+...++.-..   ...++.   ..|.+.  -++.+.  ....+.-..+|+-++.|+..
T Consensus        24 k~~~K~~lv~~~~~~c~~c~~~~r~vl~~~~V~~~i~~---~fv~~~~dv~~~eg~~l~~~~~~~~~P~~~~l~~~~   97 (122)
T smart00594       24 SRQRRLLWLYLHSQDSPDSQVFNRDVLCNEAVKSLIRE---NFIFWQVDVDTSEGQRVSQFYKLDSFPYVAIVDPRT   97 (122)
T ss_pred             HhhcCCEEEEEeCCCCchHHHHHHHHccCHHHHHHHHc---CEEEEEecCCChhHHHHHHhcCcCCCCEEEEEecCC
Confidence            35667888999999999999999986543   334433   444443  223321  12223235788888888886

>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO

Probab=87.45  E-value=1.5  Score=38.02  Aligned_cols=33  Identities=21%  Similarity=0.025  Sum_probs=25.6

Q ss_pred             cCCCEEEEeecCC-CCcchHHHHHHHHhccchhh
Q 015842          228 RESPAVLLCIRRP-GCIMCRAEAHQLYAKKPIFD  260 (399)
Q Consensus       228 ~~~pvVLvFyRg~-gCP~Cr~el~~L~e~~pef~  260 (399)
                      +++++||.|++-+ |||-|+...-.|.++..++.
T Consensus        26 ~~~~~v~~f~~~~~~cp~c~~i~P~leela~e~~   59 (111)
T cd02965          26 AGGDLVLLLAGDPVRFPEVLDVAVVLPELLKAFP   59 (111)
T ss_pred             CCCCEEEEecCCcccCcchhhhHhHHHHHHHHCC
Confidence            4588888888887 89999988777766655553

They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.

>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors

Probab=87.19  E-value=2.1  Score=31.77  Aligned_cols=33  Identities=27%  Similarity=0.506  Sum_probs=22.8

Q ss_pred             EEeecCCCCcchHHHHHHHHhccchhhhcCCeEEEEecCC
Q 015842          234 LLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLHEY  273 (399)
Q Consensus       234 LvFyRg~gCP~Cr~el~~L~e~~pef~alGV~LVaIspE~  273 (399)
                      |+.|-..|||+|...-+-|       ++.|++.-.+--+.
T Consensus         1 V~vy~~~~C~~C~~~~~~L-------~~~~i~y~~~dv~~   33 (60)
T PF00462_consen    1 VVVYTKPGCPYCKKAKEFL-------DEKGIPYEEVDVDE   33 (60)
T ss_dssp             EEEEESTTSHHHHHHHHHH-------HHTTBEEEEEEGGG
T ss_pred             cEEEEcCCCcCHHHHHHHH-------HHcCCeeeEccccc
Confidence            4567779999998776666       55666666655433

Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....

>PF00255 GSHPx: Glutathione peroxidase; InterPro: IPR000889 Glutathione peroxidase (GSHPx) (1

Probab=87.18  E-value=2.4  Score=36.63  Aligned_cols=72  Identities=17%  Similarity=0.182  Sum_probs=52.3

Q ss_pred             CCCceechhhccCCCEEEEeecCCCCcchHHHHHHHHhccchhhhcCCeEEEEec--------CChhhHHhhhcCC--CC
Q 015842          217 KTPPMKALELWRESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLH--------EYIESEVKDFWPR--YW  286 (399)
Q Consensus       217 ~G~~VsLsdL~~~~pvVLvFyRg~gCP~Cr~el~~L~e~~pef~alGV~LVaIsp--------E~~e~~ik~F~~~--~l  286 (399)
                      +|++|+|+++ +++ ++|+.==-.-|.+-. +..+|.+++.++...|-.|+|+=+        ++.+ +++.|++.  ..
T Consensus        10 ~G~~v~l~~y-~Gk-v~LIVNvAs~Cg~t~-qy~~L~~L~~ky~~~gl~ILaFPcnqFg~QEp~~~~-ei~~~~~~~~~~   85 (108)
T PF00255_consen   10 DGKPVSLSKY-KGK-VLLIVNVASKCGYTK-QYKQLNELYEKYKDKGLEILAFPCNQFGNQEPGSNE-EIKEFCKEKFGV   85 (108)
T ss_dssp             TSSEEEGGGG-TTS-EEEEEEEESSSTTHH-HHHHHHHHHHHHGGGTEEEEEEEBSTTTTTTSSCHH-HHHHHHCHCHT-
T ss_pred             CCCEECHHHc-CCC-EEEEEecccccCCcc-ccHHHHHHHHHHhcCCeEEEeeehHHhccccCCCHH-HHHHHHHhccCC
Confidence            6999999884 654 444444456888988 999999999999999999988742        2222 47888762  45


Q ss_pred             CceeEe
Q 015842          287 GGVVVY  292 (399)
Q Consensus       287 ~f~VLs  292 (399)
                      .|+|+.
T Consensus        86 ~F~vf~   91 (108)
T PF00255_consen   86 TFPVFE   91 (108)
T ss_dssp             SSEEBS
T ss_pred             cccceE
Confidence            677654

11.1.9 from EC) is an enzyme that catalyses the reduction of hydroxyperoxides by glutathione [, ]. Its main function is to protect against the damaging effect of endogenously formed hydroxyperoxides. In higher vertebrates, several forms of GSHPx are known, including a ubiquitous cytosolic form (GSHPx-1), a gastrointestinal cytosolic form (GSHPx-GI), a plasma secreted form (GSHPx-P), and an epididymal secretory form (GSHPx-EP). In addition to these characterised forms, the sequence of a protein of unknown function [] has been shown to be evolutionary related to those of GSHPx's. In filarial nematode parasites, the major soluble cuticular protein (gp29) is a secreted GSHPx, which may provide a mechanism of resistance to the immune reaction of the mammalian host by neutralising the products of the oxidative burst of leukocytes []. The Escherichia coli protein btuE, a periplasmic protein involved in vitamin B12 transport, is evolutionarily related to GSHPxs, although the significance of this relationship is unclear. The structure of bovine seleno-glutathione peroxidase has been determined []. The protein belongs to the alpha-beta class, with a 3 layer(aba) sandwich architecture. The catalyic site of GSHPx contains a conserved residue which is either a cysteine or, in many eukaryotic GSHPx, a selenocysteine []. ; GO: 0004602 glutathione peroxidase activity, 0006979 response to oxidative stress, 0055114 oxidation-reduction process; PDB: 3E0U_A 2VUP_A 2RM5_A 2RM6_A 3DWV_B 2P31_B 2R37_B 1GP1_B 2F8A_B 3KIJ_C ....

>PLN00410 U5 snRNP protein, DIM1 family; Provisional

Probab=87.09  E-value=1.1  Score=40.61  Aligned_cols=31  Identities=13%  Similarity=-0.034  Sum_probs=22.6

Q ss_pred             cCCCEEEEeecCCCCcchHHHHHHHHhccchh
Q 015842          228 RESPAVLLCIRRPGCIMCRAEAHQLYAKKPIF  259 (399)
Q Consensus       228 ~~~pvVLvFyRg~gCP~Cr~el~~L~e~~pef  259 (399)
                      .++++||-|++ .||+-|+...--|.++..++
T Consensus        22 ~~~lVVvdF~A-~WCgpCk~m~p~l~~la~~~   52 (142)
T PLN00410         22 EERLVVIRFGH-DWDETCMQMDEVLASVAETI   52 (142)
T ss_pred             CCCEEEEEEEC-CCChhHHHHHHHHHHHHHHc
Confidence            35566666665 99999998887777765555

>PLN02309 5'-adenylylsulfate reductase

Probab=86.85  E-value=1.1  Score=47.58  Aligned_cols=44  Identities=14%  Similarity=0.253  Sum_probs=36.2

Q ss_pred             CCCEEEEeecCCCCcchHHHHHHHHhccchhhhcCCeEEEEecC
Q 015842          229 ESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLHE  272 (399)
Q Consensus       229 ~~pvVLvFyRg~gCP~Cr~el~~L~e~~pef~alGV~LVaIspE  272 (399)
                      .+..+|+.|--+||+.|+.....+.++..++...++.++.|-.+
T Consensus       364 ~~k~vlV~FyApWC~~Cq~m~p~~e~LA~~~~~~~V~f~kVD~d  407 (457)
T PLN02309        364 RKEPWLVVLYAPWCPFCQAMEASYEELAEKLAGSGVKVAKFRAD  407 (457)
T ss_pred             CCCeEEEEEECCCChHHHHHHHHHHHHHHHhccCCeEEEEEECC
Confidence            45667778889999999999888888877787778888888766

>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins

Probab=86.41  E-value=0.66  Score=37.88  Aligned_cols=32  Identities=28%  Similarity=0.481  Sum_probs=22.5

Q ss_pred             hhhccCCCEEEEeecC----CCCcchHHHHHHHHhcc
Q 015842          224 LELWRESPAVLLCIRR----PGCIMCRAEAHQLYAKK  256 (399)
Q Consensus       224 sdL~~~~pvVLvFyRg----~gCP~Cr~el~~L~e~~  256 (399)
                      .++.++.|+||+ --+    +|||||..-..-|.+..
T Consensus         2 ~~~i~~~~vvvf-~k~~~~~~~Cp~C~~ak~~L~~~~   37 (90)
T cd03028           2 KKLIKENPVVLF-MKGTPEEPRCGFSRKVVQILNQLG   37 (90)
T ss_pred             hhhhccCCEEEE-EcCCCCCCCCcHHHHHHHHHHHcC
Confidence            456777887654 544    69999988777776654

The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein

>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent

Probab=86.34  E-value=1.5  Score=46.84  Aligned_cols=51  Identities=16%  Similarity=0.245  Sum_probs=38.5

Q ss_pred             chhhcc---CCCEEEEeecCCCCcchHHHHHHHHhccchhhhcCCeEEEEecCC
Q 015842          223 ALELWR---ESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLHEY  273 (399)
Q Consensus       223 LsdL~~---~~pvVLvFyRg~gCP~Cr~el~~L~e~~pef~alGV~LVaIspE~  273 (399)
                      +.++.+   .+..||+.|--.||+.|+.....|.++..++...|+.++.|-.+.
T Consensus       361 f~~~v~~~~~~k~VLV~FyApWC~~Ck~m~P~~eelA~~~~~~~v~~~kVdvD~  414 (463)
T TIGR00424       361 IENLLKLEERKEAWLVVLYAPWCPFCQAMEASYLELAEKLAGSGVKVAKFRADG  414 (463)
T ss_pred             HHHHHhhhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhccCCcEEEEEECCC
Confidence            445543   455677777889999999999888888777876678888786553

This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.

>PTZ00102 disulphide isomerase; Provisional

Probab=85.77  E-value=1.2  Score=45.89  Aligned_cols=71  Identities=15%  Similarity=0.158  Sum_probs=41.5

Q ss_pred             cCCCEEEEeecCCCCcchHHHHHHHHhccchhhhcC-CeEEEEecCChhhHHhhhcCCCCCceeEeccchHH
Q 015842          228 RESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALG-IQLFAVLHEYIESEVKDFWPRYWGGVVVYDQGMEF  298 (399)
Q Consensus       228 ~~~pvVLvFyRg~gCP~Cr~el~~L~e~~pef~alG-V~LVaIspE~~e~~ik~F~~~~l~f~VLsDp~r~l  298 (399)
                      ..+..|+++|--.||+.|+.....|.+....++..+ +.++.|-.+.-+.....|.-.++|--++.+.+.+.
T Consensus       373 ~~~k~vlv~f~a~wC~~C~~~~p~~~~~a~~~~~~~~v~~~~id~~~~~~~~~~~~v~~~Pt~~~~~~~~~~  444 (477)
T PTZ00102        373 KSDKDVLLEIYAPWCGHCKNLEPVYNELGEKYKDNDSIIVAKMNGTANETPLEEFSWSAFPTILFVKAGERT  444 (477)
T ss_pred             cCCCCEEEEEECCCCHHHHHHHHHHHHHHHHhccCCcEEEEEEECCCCccchhcCCCcccCeEEEEECCCcc
Confidence            334444555558999999999888887766665433 34444443332222344544556666677766543

>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile

Probab=85.61  E-value=2.8  Score=30.93  Aligned_cols=55  Identities=20%  Similarity=0.236  Sum_probs=30.6

Q ss_pred             EEeecCCCCcchHHHHHHHHhccchhhhcCCeEEEEecCChhhHHhhhcC--CCCCceeEeccc
Q 015842          234 LLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLHEYIESEVKDFWP--RYWGGVVVYDQG  295 (399)
Q Consensus       234 LvFyRg~gCP~Cr~el~~L~e~~pef~alGV~LVaIspE~~e~~ik~F~~--~~l~f~VLsDp~  295 (399)
                      +.+|-..|||+|+.....|.+       .|+....|--+.-....+.|.+  ....+|++.+.+
T Consensus         2 v~l~~~~~c~~c~~~~~~l~~-------~~i~~~~~~i~~~~~~~~~~~~~~~~~~vP~i~~~~   58 (73)
T cd02976           2 VTVYTKPDCPYCKATKRFLDE-------RGIPFEEVDVDEDPEALEELKKLNGYRSVPVVVIGD   58 (73)
T ss_pred             EEEEeCCCChhHHHHHHHHHH-------CCCCeEEEeCCCCHHHHHHHHHHcCCcccCEEEECC
Confidence            466778899999876555544       3555444443321122334443  235677776654

In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou

>TIGR00365 monothiol glutaredoxin, Grx4 family

Probab=85.30  E-value=0.94  Score=37.76  Aligned_cols=32  Identities=28%  Similarity=0.400  Sum_probs=22.7

Q ss_pred             chhhccCCCEEEEeecC----CCCcchHHHHHHHHhc
Q 015842          223 ALELWRESPAVLLCIRR----PGCIMCRAEAHQLYAK  255 (399)
Q Consensus       223 LsdL~~~~pvVLvFyRg----~gCP~Cr~el~~L~e~  255 (399)
                      +..+.++.++| +|-.+    .|||||..--.-|.+.
T Consensus         5 v~~~i~~~~Vv-vf~kg~~~~~~Cp~C~~ak~lL~~~   40 (97)
T TIGR00365         5 IKEQIKENPVV-LYMKGTPQFPQCGFSARAVQILKAC   40 (97)
T ss_pred             HHHHhccCCEE-EEEccCCCCCCCchHHHHHHHHHHc
Confidence            45667777765 55665    7999998776666553

The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.

>TIGR02180 GRX_euk Glutaredoxin

Probab=84.80  E-value=2.6  Score=32.55  Aligned_cols=35  Identities=9%  Similarity=0.195  Sum_probs=23.7

Q ss_pred             EeecCCCCcchHHHHHHHHhccchhhhcCCeEEEEecC
Q 015842          235 LCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLHE  272 (399)
Q Consensus       235 vFyRg~gCP~Cr~el~~L~e~~pef~alGV~LVaIspE  272 (399)
                      +.|-..|||+|+.....|.+..  +. -.+.++-|..+
T Consensus         2 ~~f~~~~Cp~C~~~~~~L~~~~--i~-~~~~~~~v~~~   36 (84)
T TIGR02180         2 VVFSKSYCPYCKKAKEILAKLN--VK-PAYEVVELDQL   36 (84)
T ss_pred             EEEECCCChhHHHHHHHHHHcC--CC-CCCEEEEeeCC
Confidence            4556799999999888887765  21 12566666644

This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.

>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions

Probab=84.58  E-value=2.7  Score=35.27  Aligned_cols=41  Identities=15%  Similarity=0.239  Sum_probs=28.9

Q ss_pred             CEEEEeecCCCCcchHHHHHHHHhccchhhhcCCeEEEEecCC
Q 015842          231 PAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLHEY  273 (399)
Q Consensus       231 pvVLvFyRg~gCP~Cr~el~~L~e~~pef~alGV~LVaIspE~  273 (399)
                      +.||+.|-..||+.|+.....|.++..++.  ++.++-|-.+.
T Consensus        25 ~~vvv~F~a~~c~~C~~l~~~l~~la~~~~--~v~f~~vd~~~   65 (113)
T cd02957          25 TRVVVHFYEPGFPRCKILDSHLEELAAKYP--ETKFVKINAEK   65 (113)
T ss_pred             CEEEEEEeCCCCCcHHHHHHHHHHHHHHCC--CcEEEEEEchh
Confidence            456666777899999988888877666553  56666665443

Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te

>PF05176 ATP-synt_10: ATP10 protein; InterPro: IPR007849 This entry represents the ATPase assembly factor ATP10 found in mitochondria, which is essential for the assembly of the mitochondrial F1-F0 complex

Probab=84.21  E-value=4.3  Score=39.96  Aligned_cols=66  Identities=14%  Similarity=-0.005  Sum_probs=40.8

Q ss_pred             ccCccccccchhhhcccccccccCCCceechhhccCCC-EEEEeecCCCCcchHHHHHHHHhccchhhhcCCeEEEEecC
Q 015842          194 IENISIQKLTPEYKIGMERLVKTKTPPMKALELWRESP-AVLLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLHE  272 (399)
Q Consensus       194 L~~i~l~~l~~~~~~g~~~~v~~~G~~VsLsdL~~~~p-vVLvFyRg~gCP~Cr~el~~L~e~~pef~alGV~LVaIspE  272 (399)
                      .|++.-++|.              |+.+.+.+++.++. +|.+|++.++=..|.....-+.+.+..-....+++|-|..+
T Consensus       101 FP~l~g~tL~--------------g~~~~~~~~l~gkvSlV~l~s~~~ge~~~~sw~~p~~~~~~~~~~~~~q~v~In~~  166 (252)
T PF05176_consen  101 FPNLQGKTLA--------------GNKVDTTDLLRGKVSLVCLFSSAWGEEMVDSWTSPFLEDFLQEPYGRVQIVEINLI  166 (252)
T ss_pred             CCCCccccCC--------------CCCcccccccCCceEEEEEeehHHHHHHHHHHhhHHHHHHhhCCCCceEEEEEecc
Confidence            3577666664              78999999998775 46667776666555555553332222222127889888754


Q ss_pred             C
Q 015842          273 Y  273 (399)
Q Consensus       273 ~  273 (399)
                      .
T Consensus       167 e  167 (252)
T PF05176_consen  167 E  167 (252)
T ss_pred             h
Confidence            3

A yeast nuclear gene (ATP10) encodes a product that is essential for the assembly of a functional mitochondrial ATPase complex. Mutations in ATP10 induce a loss of rutamycin sensitivity in the mitochondrial ATPase, but do not affect the respiratory enzymes. ATP10 has an Mr of 30,293 and its primary structure is not related to any known subunit of the yeast or mammalian mitochondrial ATPase complexes. ATP10 is associated with the mitochondrial membrane. It is suggested that the ATP10 product is not a subunit of the ATPase complex but rather a protein required for the assembly of the F0 sector of the complex [].; GO: 0033615 mitochondrial proton-transporting ATP synthase complex assembly, 0005743 mitochondrial inner membrane

>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1

Probab=84.09  E-value=2.8  Score=36.74  Aligned_cols=42  Identities=12%  Similarity=0.149  Sum_probs=28.5

Q ss_pred             CCEEEEeecCCCCcchHHHHHHHHhccchhhhcCCeEEEEecC
Q 015842          230 SPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLHE  272 (399)
Q Consensus       230 ~pvVLvFyRg~gCP~Cr~el~~L~e~~pef~alGV~LVaIspE  272 (399)
                      +++||+-|-+.|||-|+....-|.++..++... |.++-|--+
T Consensus        14 ~klVVVdF~a~WC~pCk~mdp~l~ela~~~~~~-~~f~kVDVD   55 (114)
T cd02986          14 EKVLVLRFGRDEDAVCLQLDDILSKTSHDLSKM-ASIYLVDVD   55 (114)
T ss_pred             CCEEEEEEeCCCChhHHHHHHHHHHHHHHccCc-eEEEEEecc
Confidence            455556666799999999888888777766332 555555444

Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.

>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional

Probab=83.91  E-value=2.3  Score=46.21  Aligned_cols=67  Identities=10%  Similarity=0.065  Sum_probs=38.6

Q ss_pred             CCCEEEEeecCCCCcchHHHHHHH---HhccchhhhcCCeEEEEecCCh----hhHHhhhcCCCCCceeEeccchHH
Q 015842          229 ESPAVLLCIRRPGCIMCRAEAHQL---YAKKPIFDALGIQLFAVLHEYI----ESEVKDFWPRYWGGVVVYDQGMEF  298 (399)
Q Consensus       229 ~~pvVLvFyRg~gCP~Cr~el~~L---~e~~pef~alGV~LVaIspE~~----e~~ik~F~~~~l~f~VLsDp~r~l  298 (399)
                      ++|++|.|+ ..||+.|+......   .+...+++  ++.++-|--+..    ....++|.-...|.-++.|++.+.
T Consensus       474 gK~VlVdF~-A~WC~~Ck~~e~~~~~~~~v~~~l~--~~~~v~vDvt~~~~~~~~l~~~~~v~g~Pt~~~~~~~G~~  547 (571)
T PRK00293        474 GKPVMLDLY-ADWCVACKEFEKYTFSDPQVQQALA--DTVLLQADVTANNAEDVALLKHYNVLGLPTILFFDAQGQE  547 (571)
T ss_pred             CCcEEEEEE-CCcCHhHHHHHHHhcCCHHHHHHhc--CCEEEEEECCCCChhhHHHHHHcCCCCCCEEEEECCCCCC
Confidence            456666666 89999999865543   12233332  456655543221    112344444667877888877554

>PRK10824 glutaredoxin-4; Provisional

Probab=83.70  E-value=1.2  Score=38.97  Aligned_cols=32  Identities=22%  Similarity=0.350  Sum_probs=23.9

Q ss_pred             chhhccCCCEEEEeecC----CCCcchHHHHHHHHhc
Q 015842          223 ALELWRESPAVLLCIRR----PGCIMCRAEAHQLYAK  255 (399)
Q Consensus       223 LsdL~~~~pvVLvFyRg----~gCP~Cr~el~~L~e~  255 (399)
                      +.++.+..|+| +|-.+    +|||||+.-.+-|.+.
T Consensus         8 v~~~I~~~~Vv-vf~Kg~~~~p~Cpyc~~ak~lL~~~   43 (115)
T PRK10824          8 IQRQIAENPIL-LYMKGSPKLPSCGFSAQAVQALSAC   43 (115)
T ss_pred             HHHHHhcCCEE-EEECCCCCCCCCchHHHHHHHHHHc
Confidence            46677777765 56777    6999998877766665

>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions

Probab=83.29  E-value=3.9  Score=31.50  Aligned_cols=30  Identities=23%  Similarity=0.329  Sum_probs=21.1

Q ss_pred             EEeecCCCCcchHHHHHHHHhccchhhhcCCeEEEEe
Q 015842          234 LLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVL  270 (399)
Q Consensus       234 LvFyRg~gCP~Cr~el~~L~e~~pef~alGV~LVaIs  270 (399)
                      |.+|-..|||+|+.-..-|.+       .|+....|-
T Consensus         3 v~ly~~~~C~~C~ka~~~L~~-------~gi~~~~~d   32 (73)
T cd03027           3 VTIYSRLGCEDCTAVRLFLRE-------KGLPYVEIN   32 (73)
T ss_pred             EEEEecCCChhHHHHHHHHHH-------CCCceEEEE
Confidence            456777999999887777765       455555553

GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.

>PF00837 T4_deiodinase: Iodothyronine deiodinase; InterPro: IPR000643 Iodothyronine deiodinase (1

Probab=82.78  E-value=14  Score=36.31  Aligned_cols=68  Identities=18%  Similarity=0.148  Sum_probs=49.1

Q ss_pred             CCCCCCCCCcccccCccccccchhhhcccccccccCCCc-eechhhcc-CCCEEEEeecCCCCcchHHHHHHHHhccchh
Q 015842          182 PPVNEKVAPYSAIENISIQKLTPEYKIGMERLVKTKTPP-MKALELWR-ESPAVLLCIRRPGCIMCRAEAHQLYAKKPIF  259 (399)
Q Consensus       182 a~~~~~~apl~~L~~i~l~~l~~~~~~g~~~~v~~~G~~-VsLsdL~~-~~pvVLvFyRg~gCP~Cr~el~~L~e~~pef  259 (399)
                      ....|..||     |.++-+++              |+. .++-|..+ ++|+||.| ...-||.=...+.+++++..++
T Consensus        72 ~a~~G~~AP-----ns~vv~l~--------------g~~~~~ildf~~g~RPLVlnF-GS~TCPpF~~~l~~f~~l~~~f  131 (237)
T PF00837_consen   72 EAKLGGPAP-----NSPVVTLD--------------GQRSCRILDFAKGNRPLVLNF-GSCTCPPFMAKLDAFKRLVEDF  131 (237)
T ss_pred             ceeCCCCCC-----CCceEeeC--------------CCcceeHHHhccCCCCeEEEc-ccccchHHHHHHHHHHHHHHHh
Confidence            346788888     66655554              777 88888765 57888776 4556999999999999888888


Q ss_pred             hhcCCeEEEEe
Q 015842          260 DALGIQLFAVL  270 (399)
Q Consensus       260 ~alGV~LVaIs  270 (399)
                      .+ =|..+.|.
T Consensus       132 ~d-~adFl~VY  141 (237)
T PF00837_consen  132 SD-VADFLIVY  141 (237)
T ss_pred             hh-hhheehhh
Confidence            65 24555664

97.1.10 from EC) (DI) [] is the vertebrate enzyme responsible for the deiodination of the prohormone thyroxine (T4 or 3,5,3',5'-tetraiodothyronine) into the biologically active hormone T3 (3,5,3'-triiodothyronine) and of T3 into the inactive metabolite T2 (3,3'-diiodothyronine). All known DI are proteins of about 250 residues that contain a selenocysteine at their active site. Three types of DI are known, type II is essential for providing the brain with the appropriate levels of T3 during the critical period of development, and type III is essential for the regulation of thyroid hormone inactivation during embryological development.; GO: 0004800 thyroxine 5'-deiodinase activity, 0055114 oxidation-reduction process

>TIGR02187 GlrX_arch Glutaredoxin-like domain protein

Probab=81.67  E-value=4.2  Score=38.21  Aligned_cols=61  Identities=10%  Similarity=-0.000  Sum_probs=32.7

Q ss_pred             CCCEEEEeecCCCCcchHHHHHHHHhccchhhhcCCeEEEEecCChhhHHhhhcCCCCCceeE
Q 015842          229 ESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLHEYIESEVKDFWPRYWGGVVV  291 (399)
Q Consensus       229 ~~pvVLvFyRg~gCP~Cr~el~~L~e~~pef~alGV~LVaIspE~~e~~ik~F~~~~l~f~VL  291 (399)
                      ++|++|..|--.|||+|......+.++..+  .-.+.++-|-.+......+.|.-...|--++
T Consensus       132 ~~pv~I~~F~a~~C~~C~~~~~~l~~l~~~--~~~i~~~~vD~~~~~~~~~~~~V~~vPtl~i  192 (215)
T TIGR02187       132 DEPVRIEVFVTPTCPYCPYAVLMAHKFALA--NDKILGEMIEANENPDLAEKYGVMSVPKIVI  192 (215)
T ss_pred             CCCcEEEEEECCCCCCcHHHHHHHHHHHHh--cCceEEEEEeCCCCHHHHHHhCCccCCEEEE
Confidence            568888878889999999665444443221  1134444444433333233333234444444

This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.

>KOG2792 consensus Putative cytochrome C oxidase assembly protein [Energy production and conversion]

Probab=81.33  E-value=19  Score=36.13  Aligned_cols=58  Identities=12%  Similarity=0.187  Sum_probs=39.9

Q ss_pred             cccCCCceechhhccCCCEEEEeecCCCCc-chHHHHHHHHhccchhhhc-CCe--EEEEecCC
Q 015842          214 VKTKTPPMKALELWRESPAVLLCIRRPGCI-MCRAEAHQLYAKKPIFDAL-GIQ--LFAVLHEY  273 (399)
Q Consensus       214 v~~~G~~VsLsdL~~~~pvVLvFyRg~gCP-~Cr~el~~L~e~~pef~al-GV~--LVaIspE~  273 (399)
                      ++.+|+.++-.++. .+.++|. |=-..|| .|=.|+.-|.....++++. |+.  -|+|+.+.
T Consensus       125 ~d~~Gk~~te~df~-Gkw~LiY-FGFThCPDICPdELeKm~~~Vd~i~~~~~~~~~PlFIsvDP  186 (280)
T KOG2792|consen  125 VDHDGKRVTEKDFL-GKWSLIY-FGFTHCPDICPDELEKMSAVVDEIEAKPGLPPVPLFISVDP  186 (280)
T ss_pred             EecCCCeecccccc-cceEEEE-ecccCCCCcChHHHHHHHHHHHHHhccCCCCccceEEEeCc
Confidence            34579999999974 3455544 4444898 8999999999988888753 333  25666443

>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants

Probab=80.84  E-value=3.5  Score=33.11  Aligned_cols=43  Identities=9%  Similarity=0.044  Sum_probs=31.8

Q ss_pred             CCCEEEEeecCCCCcchHHHHHHHHhccchhhhcCCeEEEEecCC
Q 015842          229 ESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLHEY  273 (399)
Q Consensus       229 ~~pvVLvFyRg~gCP~Cr~el~~L~e~~pef~alGV~LVaIspE~  273 (399)
                      ++|+++.| ...||+-|+.....|.++..+++.. +.++.|-.+.
T Consensus        12 ~~~~~~~f-~~~~~~~~~~~~~~~~~vA~~~~~~-v~f~~vd~~~   54 (103)
T cd02982          12 GKPLLVLF-YNKDDSESEELRERFKEVAKKFKGK-LLFVVVDADD   54 (103)
T ss_pred             CCCEEEEE-EcCChhhHHHHHHHHHHHHHHhCCe-EEEEEEchHh
Confidence            45766655 5789999999999999988888732 5666665544

Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w

>TIGR02187 GlrX_arch Glutaredoxin-like domain protein

Probab=80.37  E-value=3.7  Score=38.53  Aligned_cols=66  Identities=11%  Similarity=0.242  Sum_probs=34.7

Q ss_pred             cCCCEEEEeec--CCCCcchHHHHHHHHhccchhhhcCCeEEEEecC--ChhhHHhhhcCCCCCceeEeccc
Q 015842          228 RESPAVLLCIR--RPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLHE--YIESEVKDFWPRYWGGVVVYDQG  295 (399)
Q Consensus       228 ~~~pvVLvFyR--g~gCP~Cr~el~~L~e~~pef~alGV~LVaIspE--~~e~~ik~F~~~~l~f~VLsDp~  295 (399)
                      +.+-.|++|+-  ..|||.|+....-|.++..++.  ++++..|..+  ......+.|.=...|--++.+.+
T Consensus        18 ~~~~~i~~f~~~~a~wC~~C~~~~p~l~~la~~~~--~~~i~~v~vd~~~~~~l~~~~~V~~~Pt~~~f~~g   87 (215)
T TIGR02187        18 KNPVEIVVFTDNDKEGCQYCKETEQLLEELSEVSP--KLKLEIYDFDTPEDKEEAEKYGVERVPTTIILEEG   87 (215)
T ss_pred             CCCeEEEEEcCCCCCCCCchHHHHHHHHHHHhhCC--CceEEEEecCCcccHHHHHHcCCCccCEEEEEeCC
Confidence            33344444444  2899999998877777655553  3455555443  22222444432334433443333

This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	399
4gqc_A	164	Thiol peroxidase, peroxiredoxin Q; CXXXXC motif, f	99.93
4g2e_A	157	Peroxiredoxin; redox protein, structural genomics,	99.93
3mng_A	173	Peroxiredoxin-5, mitochondrial; peroxidase, PRXV,	99.88
3sbc_A	216	Peroxiredoxin TSA1; alpha-beta fold, peroxidase, c	99.87
3keb_A	224	Probable thiol peroxidase; structural genomics, AP	99.87
3tue_A	219	Tryparedoxin peroxidase; thioredoxin fold, peroxir	99.87
3p7x_A	166	Probable thiol peroxidase; thioredoxin fold, oxido	99.86
3drn_A	161	Peroxiredoxin, bacterioferritin comigratory prote	99.85
3uma_A	184	Hypothetical peroxiredoxin protein; nysgrc, PSI bi	99.85
1psq_A	163	Probable thiol peroxidase; structural genomics, NY	99.85
1tp9_A	162	Peroxiredoxin, PRX D (type II); oligomer, thioredo	99.85
1xiy_A	182	Peroxiredoxin, pfaop; alpha-aneurysm, thioredoxin	99.85
3gkn_A	163	Bacterioferritin comigratory protein; BCP, PRX, at	99.84
3ixr_A	179	Bacterioferritin comigratory protein; alpha beta p	99.84
2yzh_A	171	Probable thiol peroxidase; redox protein, antioxid	99.84
2xhf_A	171	Peroxiredoxin 5; oxidoreductase, antioxidant enzym	99.83
1q98_A	165	Thiol peroxidase, TPX; structural genomics, NYSGXR	99.83
2wfc_A	167	Peroxiredoxin 5, PRDX5; oxidoreductase, antioxidan	99.83
3zrd_A	200	Thiol peroxidase; oxidoreductase, 2Cys peroxiredox	99.82
4eo3_A	322	Bacterioferritin comigratory protein/NADH dehydro;	99.82
1n8j_A	186	AHPC, alkyl hydroperoxide reductase C22 protein; p	99.82
2pwj_A	171	Mitochondrial peroxiredoxin; alpha and beta protei	99.82
3qpm_A	240	Peroxiredoxin; oxidoreductase, thioredoxin fold, p	99.81
4f82_A	176	Thioredoxin reductase; structural genomics, niaid,	99.81
1prx_A	224	HORF6; peroxiredoxin, hydrogen peroxide, redox reg	99.81
2pn8_A	211	Peroxiredoxin-4; thioredoxin, oxidoreductase, stru	99.8
3tjj_A	254	Peroxiredoxin-4; thioredoxin fold, sulfenylation,	99.8
2v2g_A	233	Peroxiredoxin 6; oxidoreductase, antioxidant enzym	99.8
1xvw_A	160	Hypothetical protein RV2238C/MT2298; thioredoxin f	99.8
1we0_A	187	Alkyl hydroperoxide reductase C; peroxiredoxin, AH	99.8
2c0d_A	221	Thioredoxin peroxidase 2; peroxiredoxin, 2-Cys, th	99.8
2i81_A	213	2-Cys peroxiredoxin; structural genomics consortiu	99.79
2jsy_A	167	Probable thiol peroxidase; solution structure, ant	99.79
1nm3_A	241	Protein HI0572; hybrid, peroxiredoxin, glutaredoxi	99.79
2h01_A	192	2-Cys peroxiredoxin; thioredoxin peroxidase, struc	99.79
1xvq_A	175	Thiol peroxidase; thioredoxin fold, structural gen	99.79
1zye_A	220	Thioredoxin-dependent peroxide reductase; catenane	99.78
1xcc_A	220	1-Cys peroxiredoxin; unknown function, structural	99.78
3ztl_A	222	Thioredoxin peroxidase; oxidoreductase, reductase,	99.78
1uul_A	202	Tryparedoxin peroxidase homologue; peroxiredoxin,	99.77
2bmx_A	195	Alkyl hydroperoxidase C; peroxiredoxin, antioxidan	99.77
2a4v_A	159	Peroxiredoxin DOT5; yeast nuclear thiol peroxidase	99.76
1qmv_A	197	Human thioredoxin peroxidase-B; peroxiredoxin, sul	99.74
1zof_A	198	Alkyl hydroperoxide-reductase; decamer, toroide-sh	99.74
3a2v_A	249	Probable peroxiredoxin; thioredoxin peroxidase, hy	99.73
3kcm_A	154	Thioredoxin family protein; SGX, thioredoxin prote	99.69
2f9s_A	151	Thiol-disulfide oxidoreductase RESA; thioredoxin-l	99.67
3gl3_A	152	Putative thiol:disulfide interchange protein DSBE;	99.67
2ywi_A	196	Hypothetical conserved protein; uncharacterized co	99.66
2lrn_A	152	Thiol:disulfide interchange protein; structural ge	99.66
3u5r_E	218	Uncharacterized protein; structural genomics, PSI-	99.65
2l5o_A	153	Putative thioredoxin; structural genomics, unknown	99.64
3ewl_A	142	Uncharacterized conserved protein BF1870; alpha-be	99.64
1xzo_A	174	BSSCO, hypothetical protein YPMQ; thioredoxin-like	99.63
3hcz_A	148	Possible thiol-disulfide isomerase; APC61559.2, cy	99.63
2lrt_A	152	Uncharacterized protein; structural genomics, thio	99.62
3eyt_A	158	Uncharacterized protein SPOA0173; thioredoxin-like	99.61
3fw2_A	150	Thiol-disulfide oxidoreductase; structural genomic	99.6
3hdc_A	158	Thioredoxin family protein; ATCC53774, DSM 7210, ,	99.6
3fkf_A	148	Thiol-disulfide oxidoreductase; structural genomic	99.6
3erw_A	145	Sporulation thiol-disulfide oxidoreductase A; thio	99.6
3or5_A	165	Thiol:disulfide interchange protein, thioredoxin p	99.6
1jfu_A	186	Thiol:disulfide interchange protein TLPA; thioredo	99.59
3kh7_A	176	Thiol:disulfide interchange protein DSBE; TRX-like	99.59
3ia1_A	154	THIO-disulfide isomerase/thioredoxin; oxidoreducta	99.57
3lwa_A	183	Secreted thiol-disulfide isomerase; thioredoxin, P	99.57
2cvb_A	188	Probable thiol-disulfide isomerase/thioredoxin; re	99.57
3eur_A	142	Uncharacterized protein; PSI2,MCSG, conserved prot	99.56
3lor_A	160	Thiol-disulfide isomerase and thioredoxins; PSI, M	99.55
2obi_A	183	PHGPX, GPX-4, phospholipid hydroperoxide glutathio	99.54
4fo5_A	143	Thioredoxin-like protein; AHPC/TSA family protein,	99.54
3raz_A	151	Thioredoxin-related protein; structural genomics,	99.54
2ls5_A	159	Uncharacterized protein; structural genomics, unkn	99.29
2v1m_A	169	Glutathione peroxidase; selenium, selenocysteine,	99.53
2b5x_A	148	YKUV protein, TRXY; thioredoxin-like, oxidoreducta	99.53
1lu4_A	136	Soluble secreted antigen MPT53; thioredoxin-like f	99.53
1zzo_A	136	RV1677; thioredoxin fold, structural genomics, PSI	99.52
2lja_A	152	Putative thiol-disulfide oxidoreductase; structura	99.51
2b1k_A	168	Thiol:disulfide interchange protein DSBE; C-termin	99.51
4evm_A	138	Thioredoxin family protein; structural genomics, n	99.5
2gs3_A	185	PHGPX, GPX-4, phospholipid hydroperoxide glutathio	99.49
3ha9_A	165	Uncharacterized thioredoxin-like protein; PSI, MCS	99.48
2hyx_A	352	Protein DIPZ; thioredoxin fold, jelly-roll, struct	99.48
2p5q_A	170	Glutathione peroxidase 5; thioredoxin fold, oxidor	99.47
3me7_A	170	Putative uncharacterized protein; electron transfe	99.47
2vup_A	190	Glutathione peroxidase-like protein; oxidoreductas	99.46
1kng_A	156	Thiol:disulfide interchange protein CYCY; thioredo	99.44
3dwv_A	187	Glutathione peroxidase-like protein; alpha beta, 3	99.44
3cmi_A	171	Peroxiredoxin HYR1; thioredoxin-like fold, oxidore	99.44
2k6v_A	172	Putative cytochrome C oxidase assembly protein; th	99.44
2ggt_A	164	SCO1 protein homolog, mitochondrial; copper chaper	99.44
2h30_A	164	Thioredoxin, peptide methionine sulfoxide reductas	99.44
2p31_A	181	CL683, glutathione peroxidase 7; thioredoxin fold,	99.41
2rli_A	171	SCO2 protein homolog, mitochondrial; copper protei	99.4
3kij_A	180	Probable glutathione peroxidase 8; human PDI-perox	99.38
2b7k_A	200	SCO1 protein; metallochaperone, cytochrome C oxida	99.36
2f8a_A	208	Glutathione peroxidase 1; thioredoxin fold, struct	99.36
2i3y_A	215	Epididymal secretory glutathione peroxidase; thior	99.34
2r37_A	207	Glutathione peroxidase 3; plasma, structural genom	99.31
1i5g_A	144	Tryparedoxin II; electron transport; HET: TS5; 1.4	99.28
4hde_A	170	SCO1/SENC family lipoprotein; structural genomics,	99.25
1o8x_A	146	Tryparedoxin, TRYX, TXNI; tryparedoxin-I, synchrot	99.24
3s9f_A	165	Tryparedoxin; thioredoxin fold, disulfide reductas	99.2
1o73_A	144	Tryparedoxin; electron transport, trypanosomatid,	99.2
2lus_A	143	Thioredoxion; CR-Trp16, oxidoreductase; NMR {Carci	98.83
4h86_A	199	Peroxiredoxin type-2; oxidoreductase; 2.00A {Sacch	98.69
2l57_A	126	Uncharacterized protein; structural genomics, unkn	98.38
2ju5_A	154	Thioredoxin disulfide isomerase; protein, oxidored	98.25
2fwh_A	134	Thiol:disulfide interchange protein DSBD; thioredo	98.11
2pu9_C	111	TRX-F, thioredoxin F-type, chloroplast; protein-pr	97.89
2kuc_A	130	Putative disulphide-isomerase; structural genomics	97.89
3fk8_A	133	Disulphide isomerase; APC61824.1, xylella fastidio	97.88
1faa_A	124	Thioredoxin F; electron transport; 1.85A {Spinacia	97.8
2e0q_A	104	Thioredoxin; electron transport; 1.49A {Sulfolobus	97.78
3hxs_A	141	Thioredoxin, TRXP; electron transport; 2.00A {Bact	97.67
1thx_A	115	Thioredoxin, thioredoxin 2; oxido-reductase, elect	97.67
2voc_A	112	Thioredoxin; electron transport, homodimer, disulf	97.63
2vlu_A	122	Thioredoxin, thioredoxin H isoform 2.; oxidoreduct	97.63
3emx_A	135	Thioredoxin; structural genomics, oxidoreductase,	97.54
3d22_A	139	TRXH4, thioredoxin H-type; electron transport, cyt	97.47
1w4v_A	119	Thioredoxin, mitochondrial; antioxidant enzyme, mi	97.46
2f51_A	118	Thioredoxin; electron transport; 1.90A {Trichomona	97.44
3die_A	106	Thioredoxin, TRX; electron transport, SWAP domain,	97.4
1xfl_A	124	Thioredoxin H1; AT3G51030, structural genomics, pr	97.39
2j23_A	121	Thioredoxin; immune protein, autoreactivity, cross	97.38
2vim_A	104	Thioredoxin, TRX; thioredoxin fold, oxidoreductase	97.23
2i4a_A	107	Thioredoxin; acidophIle, disulfide exchange, oxido	97.2
1sen_A	164	Thioredoxin-like protein P19; endoplasmic reticulu	97.16
3hz4_A	140	Thioredoxin; NYSGXRC, PSI-II, reduced form, protei	97.13
3f3q_A	109	Thioredoxin-1; His TAG, electron transport, cytopl	97.06
3uvt_A	111	Thioredoxin domain-containing protein 5; thioredox	97.03
2vm1_A	118	Thioredoxin, thioredoxin H isoform 1.; oxidoreduct	97.0
3d6i_A	112	Monothiol glutaredoxin-3; thioredoxin-like, electr	96.96
1nsw_A	105	Thioredoxin, TRX; thermostability, electron transp	96.95
2dj1_A	140	Protein disulfide-isomerase A4; protein ERP-72, ER	96.94
1fb6_A	105	Thioredoxin M; electron transport; 2.10A {Spinacia	96.92
1syr_A	112	Thioredoxin; SGPP, structural genomics, PSI, prote	96.92
3aps_A	122	DNAJ homolog subfamily C member 10; thioredoxin fo	96.88
3m9j_A	105	Thioredoxin; oxidoreductase; 1.10A {Homo sapiens}	96.86
1t00_A	112	Thioredoxin, TRX; redox regulation, multifunction	96.85
2yzu_A	109	Thioredoxin; redox protein, electron transport, st	96.85
3qfa_C	116	Thioredoxin; protein-protein complex, rossmann fol	96.82
2l5l_A	136	Thioredoxin; structural genomics, electron transpo	96.81
1xwb_A	106	Thioredoxin; dimerization, redox regulation, THI X	96.8
1ep7_A	112	Thioredoxin CH1, H-type; electron transport; 2.10A	96.8
2oe3_A	114	Thioredoxin-3; electron transport, alpha/beta sand	96.8
3tco_A	109	Thioredoxin (TRXA-1); disulfide oxidoreductase, ox	96.76
1x5d_A	133	Protein disulfide-isomerase A6; PDIA6, ERP5, TXNDC	96.74
4euy_A	105	Uncharacterized protein; structural genomics, PSI-	96.72
2dml_A	130	Protein disulfide-isomerase A6; thioredoxin domain	96.67
3ul3_B	128	Thioredoxin, thioredoxin-2; PTEX, oxidoreductase;	96.63
1dby_A	107	Chloroplast thioredoxin M CH2; thioredoxin CH2, ch	96.62
2yj7_A	106	LPBCA thioredoxin; oxidoreductase; 1.65A {Syntheti	95.6
3gnj_A	111	Thioredoxin domain protein; APC92103, STR genomics	96.56
2xc2_A	117	Thioredoxinn; oxidoreductase, protein disulfide re	96.55
1ti3_A	113	Thioredoxin H, PTTRXH1; oxidoreductase; NMR {Popul	96.55
2trx_A	108	Thioredoxin; electron transport; 1.68A {Escherichi	96.54
2i1u_A	121	Thioredoxin, TRX, MPT46; redox protein, electron t	96.5
2dj3_A	133	Protein disulfide-isomerase A4; protein ERP-72, ER	96.35
3idv_A	241	Protein disulfide-isomerase A4; thioredoxin-like f	96.33
1gh2_A	107	Thioredoxin-like protein; redox-active center, ele	96.33
1x5e_A	126	Thioredoxin domain containing protein 1; TMX, TXND	96.29
2wz9_A	153	Glutaredoxin-3; protein binding; 1.55A {Homo sapie	96.25
2lst_A	130	Thioredoxin; structural genomics, NEW YORK structu	95.23
1wmj_A	130	Thioredoxin H-type; structural genomics, program f	96.17
2l6c_A	110	Thioredoxin; oxidoreductase; NMR {Desulfovibrio vu	96.17
2djj_A	121	PDI, protein disulfide-isomerase; thioredoxin fold	96.17
3zzx_A	105	Thioredoxin; oxidoreductase; 1.88A {Litopenaeus va	96.14
1mek_A	120	Protein disulfide isomerase; electron transport, r	96.13
3p2a_A	148	Thioredoxin 2, putative thioredoxin-like protein;	96.08
2o8v_B	128	Thioredoxin 1; disulfide crosslinked complex, oxid	96.05
2ppt_A	155	Thioredoxin-2; thiredoxin, zinc finger, oxidoreduc	96.03
1r26_A	125	Thioredoxin; redox-active disulfide, electron tran	96.0
1wou_A	123	Thioredoxin -related protein, 14 kDa; electron tra	95.94
3cxg_A	133	Putative thioredoxin; malaria, structural GEN oxid	95.93
3ira_A	173	Conserved protein; methanosarcina mazei,structural	95.92
1z6n_A	167	Hypothetical protein PA1234; alpha-beta-alpha sand	95.9
3f9u_A	172	Putative exported cytochrome C biogenesis-related;	95.82
1v98_A	140	Thioredoxin; oxidoreductase, structural genomics,	95.8
3dxb_A	222	Thioredoxin N-terminally fused to PUF60(UHM); spli	95.69
2dj0_A	137	Thioredoxin-related transmembrane protein 2; AVLA2	95.61
3h79_A	127	Thioredoxin-like protein; thioredoxin fold, cataly	95.48
3gix_A	149	Thioredoxin-like protein 4B; PRE-mRNA splicing, TX	95.17
3ph9_A	151	Anterior gradient protein 3 homolog; thioredoxin f	95.11
3q6o_A	244	Sulfhydryl oxidase 1; protein disulfide isomerase,	95.08
1zma_A	118	Bacterocin transport accessory protein; alpha-beta	95.01
1fo5_A	85	Thioredoxin; disulfide oxidoreductase, structural	94.9
1nho_A	85	Probable thioredoxin; beta sheet, alpha helix, oxi	94.83
1qgv_A	142	Spliceosomal protein U5-15KD; snRNP, thioredoxin,	94.51
2b5e_A	504	Protein disulfide-isomerase; 2.40A {Saccharomyces	94.3
3ed3_A	298	Protein disulfide-isomerase MPD1; thioredoxin-like	94.27
1wjk_A	100	C330018D20RIK protein; glutaredoxin, thioredoxin f	94.23
1a8l_A	226	Protein disulfide oxidoreductase; PDI, thioredoxin	94.22
3apq_A	210	DNAJ homolog subfamily C member 10; thioredoxin fo	94.19
3idv_A	241	Protein disulfide-isomerase A4; thioredoxin-like f	94.16
3f8u_A	481	Protein disulfide-isomerase A3ERP57; endoplasmic r	93.82
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	93.78
2trc_P	217	Phosducin, MEKA, PP33; transducin, beta-gamma, sig	93.44
3qcp_A	470	QSOX from trypanosoma brucei (tbqsox); ERV fold, t	92.64
1eej_A	216	Thiol:disulfide interchange protein; oxidoreductas	92.39
2ywm_A	229	Glutaredoxin-like protein; redox protein, structur	92.36
3gyk_A	175	27KDA outer membrane protein; APC61738.2, siliciba	92.12
2hls_A	243	Protein disulfide oxidoreductase; thioredoxin fold	92.08
1wik_A	109	Thioredoxin-like protein 2; picot homology 2 domai	91.96
3kp8_A	106	Vkorc1/thioredoxin domain protein; blood coagulati	91.95
2b5e_A	504	Protein disulfide-isomerase; 2.40A {Saccharomyces	91.81
2r2j_A	382	Thioredoxin domain-containing protein 4; CRFS moti	91.68
2e7p_A	116	Glutaredoxin; thioredoxin fold, poplar, electron t	91.55
1oaz_A	123	Thioredoxin 1; immune system, antibody/complex, an	91.52
2dbc_A	135	PDCL2, unnamed protein product; phosducin-like pro	91.37
1t3b_A	211	Thiol:disulfide interchange protein DSBC; oxidored	91.21
2kso_A	82	Ephrin type-A receptor 2; SAM domain, heterodimer,	91.13
1z6m_A	175	Conserved hypothetical protein; structural genomic	91.12
1b4f_A	82	EPHB2; SAM domain, EPH receptor, signal transducti	90.99
1a8l_A	226	Protein disulfide oxidoreductase; PDI, thioredoxin	90.8
3l9v_A	189	Putative thiol-disulfide isomerase or thioredoxin;	90.7
3hd5_A	195	Thiol:disulfide interchange protein DSBA; protein	90.57
2es7_A	142	Q8ZP25_salty, putative thiol-disulfide isomerase a	90.54
3sei_A	149	Caskin-1; SAM domain, protein-protein interaction,	90.54
2yan_A	105	Glutaredoxin-3; oxidoreductase; HET: GSH; 1.90A {H	90.37
3f8u_A	481	Protein disulfide-isomerase A3ERP57; endoplasmic r	90.35
1sji_A	350	Calsequestrin 2, calsequestrin, cardiac muscle iso	90.2
1ilo_A	77	Conserved hypothetical protein MTH895; beta-alpha-	90.04
2qkq_A	83	Ephrin type-B receptor 4; ATP-binding, glycoprotei	89.92
1ucv_A	81	Ephrin type-A receptor 8; receptor oligomerization	89.87
1kw4_A	89	Polyhomeotic; SAM domain, polycomb group, polymer,	89.85
2f3n_A	76	SH3 and multiple ankyrin repeat domains 3; postsyn	89.56
1a0r_P	245	Phosducin, MEKA, PP33; transducin, beta-gamma, sig	89.43
2e8n_A	88	Ephrin type-A receptor 2; cell-free protein synthe	89.33
3k1r_B	74	Usher syndrome type-1G protein; protein-protein co	88.97
3hil_A	82	Ephrin type-A receptor 1; ATP-binding, kinase, nuc	88.9
1b0x_A	94	Protein (EPHA4 receptor tyrosine kinase); protein	88.8
3h93_A	192	Thiol:disulfide interchange protein DSBA; disulfid	88.64
3t58_A	519	Sulfhydryl oxidase 1; oxidoreductase; HET: FAD; 2.	88.62
3sei_A	149	Caskin-1; SAM domain, protein-protein interaction,	88.16
3apo_A	780	DNAJ homolog subfamily C member 10; PDI family, th	87.89
3bq7_A	81	Diacylglycerol kinase delta; SAM domain, polymeriz	87.89
1v58_A	241	Thiol:disulfide interchange protein DSBG; reduced	87.88
2gle_A	74	Neurabin-1; SAM domain, scaffold, protein protein	87.55
3c1r_A	118	Glutaredoxin-1; oxidized form, oxidoreductase, cyt	87.53
2k8s_A	80	Thioredoxin; dimer, structural genomics, PSI-2, pr	87.48
1ego_A	85	Glutaredoxin; electron transport; NMR {Escherichia	87.41
3uem_A	361	Protein disulfide-isomerase; thioredoxin-like doma	87.38
1h75_A	81	Glutaredoxin-like protein NRDH; electron transport	87.36
1kte_A	105	Thioltransferase; redox-active center, electron tr	85.72
2rem_A	193	Disulfide oxidoreductase; disulfide oxidoreductase	85.68
2eao_A	99	Ephrin type-B receptor 1; cell-free protein synthe	85.55
3dml_A	116	Putative uncharacterized protein; thioredoxin, oxi	85.54
1r7h_A	75	NRDH-redoxin; thioredoxin, glutaredoxin, redox pro	85.35
3h8m_A	90	Ephrin type-A receptor 7; SAM domain, kinase,struc	85.3
3iv4_A	112	Putative oxidoreductase; APC23140, meticillin-resi	84.86
3bs5_B	80	Connector enhancer of kinase suppressor of RAS 2;	84.45
3apo_A	780	DNAJ homolog subfamily C member 10; PDI family, th	84.35
3hz8_A	193	Thiol:disulfide interchange protein DSBA; thiol-ox	84.32
2wci_A	135	Glutaredoxin-4; redox-active center, iron-sulfur c	84.31
3evi_A	118	Phosducin-like protein 2; alpha beta, 3-layer(ABA)	84.14
3gv1_A	147	Disulfide interchange protein; neisseria gonorrhoe	83.94
3h8q_A	114	Thioredoxin reductase 3; oxidoreductase, structura	83.87
3rhb_A	113	ATGRXC5, glutaredoxin-C5, chloroplastic; thioredox	83.86
2dlx_A	153	UBX domain-containing protein 7; UAS domain, prote	83.1
3gx8_A	121	Monothiol glutaredoxin-5, mitochondrial; TRX fold,	83.04
3feu_A	185	Putative lipoprotein; alpha-beta structure, struct	82.58
3ga4_A	178	Dolichyl-diphosphooligosaccharide-protein glycosyl	82.56
2cq9_A	130	GLRX2 protein, glutaredoxin 2; glutathione-S-trans	82.49
3ipz_A	109	Monothiol glutaredoxin-S14, chloroplastic; electro	82.4
2kiv_A	148	Ankyrin repeat and sterIle alpha motif domain- con	82.22
1fov_A	82	Glutaredoxin 3, GRX3; active site disulfide, CIS P	81.91
1v85_A	91	Similar to ring finger protein 36; apoptosis, neur	81.89
3zyw_A	111	Glutaredoxin-3; metal binding protein; 1.84A {Homo	81.61
2znm_A	195	Thiol:disulfide interchange protein DSBA; thioredo	81.55
3kka_C	86	Ephrin type-A receptor 2; ATP-binding, kinase, nuc	81.46
2kg5_A	100	ARF-GAP, RHO-GAP domain, ANK repeat and PH domain-	81.18
1hyu_A	521	AHPF, alkyl hydroperoxide reductase subunit F; thi	80.55
2ht9_A	146	Glutaredoxin-2; thioredoxin fold, iron-sulfur clus	80.13

>4gqc_A Thiol peroxidase, peroxiredoxin Q; CXXXXC motif, fully folded, locally unfolded, peroxide, DTT, structural genomics, riken; 2.00A {Aeropyrum pernix} PDB: 2cx3_A 2cx4_A 4gqf_A

Probab=99.93  E-value=9e-27  Score=206.33  Aligned_cols=156  Identities=19%  Similarity=0.181  Sum_probs=134.4

Q ss_pred             CCCCCCCCcccccCccccccchhhhcccccccccCCCceechhhcc-CCCEEEEeecCCCCcchHHHHHHHHhccchhhh
Q 015842          183 PVNEKVAPYSAIENISIQKLTPEYKIGMERLVKTKTPPMKALELWR-ESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDA  261 (399)
Q Consensus       183 ~~~~~~apl~~L~~i~l~~l~~~~~~g~~~~v~~~G~~VsLsdL~~-~~pvVLvFyRg~gCP~Cr~el~~L~e~~pef~a  261 (399)
                      +++|+.||.|.|++.                   +|++++|+++.. ++++||+|||..|||.|+.++..|++.+++|++
T Consensus         5 l~vG~~aPdF~l~~~-------------------~G~~v~Lsd~~~~Gk~vvl~f~~~~~cp~C~~e~~~l~~~~~~~~~   65 (164)
T 4gqc_A            5 VELGEKAPDFTLPNQ-------------------DFEPVNLYEVLKRGRPAVLIFFPAAFSPVCTKELCTFRDKMAQLEK   65 (164)
T ss_dssp             CCTTSBCCCCEEEBT-------------------TSCEEEHHHHHHTSSCEEEEECSCTTCCEECSSCEESCCCGGGGGG
T ss_pred             ccCCCCCcCcEeECC-------------------CCCEEEHHHHhcCCCEEEEEEeCCCCCCCcccchhhhhhhHHHhhc
Confidence            578999998888766                   599999999874 578999999999999999999999999999999


Q ss_pred             cCCeEEEEecCChhhHHhhhcC-CCCCceeEeccchHHHHHhCCCcccccccccccccCHHHHHHHHHHHhcCCccccCC
Q 015842          262 LGIQLFAVLHEYIESEVKDFWP-RYWGGVVVYDQGMEFFKALGGGKLLKDKFLSGFLLNPRAIANYKRARTLGVEQNFKG  340 (399)
Q Consensus       262 lGV~LVaIspE~~e~~ik~F~~-~~l~f~VLsDp~r~lYkaLGl~r~~r~s~lsgfl~~P~v~~~~~rA~~~G~~gn~~G  340 (399)
                      .|+.+|+|+.++++. ++.|.+ +.++|++++|++++++++||+..    ...                  .+      .
T Consensus        66 ~~v~vv~is~d~~~~-~~~~~~~~~~~fp~l~D~~~~v~~~ygv~~----~~~------------------~~------~  116 (164)
T 4gqc_A           66 ANAEVLAISVDSPWC-LKKFKDENRLAFNLLSDYNREVIKLYNVYH----EDL------------------KG------L  116 (164)
T ss_dssp             SSSEEEEEESSCHHH-HHHHHHHTTCCSEEEECTTSHHHHHTTCEE----EEE------------------TT------E
T ss_pred             cCceEEEecCCCHHH-HHHHHHhcCcccceeecCchHHHHHcCCcc----ccc------------------cc------C
Confidence            999999999998875 788885 78999999999999999999841    000                  00      1


Q ss_pred             CCcccceEEEEecCCCcEEEEEecCCCCCCCCHHHHHHHHHhhhhhh
Q 015842          341 EGEIKGGLFIVGRGRSGIAYQFIERNFGDWAPLAEVIEICTQLQDQQ  387 (399)
Q Consensus       341 D~~qLGGtFVId~gGg~I~yah~d~d~gDrad~eeVLaAl~~l~~~~  387 (399)
                      .+...|++||||++| +|+|.|+..++.++++++++|++++++..+.
T Consensus       117 ~~~~~p~tflID~~G-~I~~~~~~~~~~~~~~~~eil~~l~~l~~e~  162 (164)
T 4gqc_A          117 KMVAKRAVFIVKPDG-TVAYKWVTDNPLNEPDYDEVVREANKIAGEL  162 (164)
T ss_dssp             EEEECCEEEEECTTS-BEEEEEECSCTTCCCCHHHHHHHHHHHHHHC
T ss_pred             cCCeeeEEEEECCCC-EEEEEEEeCCCCCCCCHHHHHHHHHHHhccc
Confidence            124568999999996 9999999999999999999999999987653

>4g2e_A Peroxiredoxin; redox protein, structural genomics, NPPSFA, national project protein structural and functional analyses; 1.40A {Sulfolobus tokodaii} PDB: 2ywn_A 3hjp_A

Probab=99.93  E-value=1.1e-25  Score=197.11  Aligned_cols=153  Identities=14%  Similarity=0.158  Sum_probs=127.4

Q ss_pred             CCCCCCCCCcccccCccccccchhhhcccccccccCCCceechhhccCCCEEEEeecCCCCcchHHHHHHHHhccchhhh
Q 015842          182 PPVNEKVAPYSAIENISIQKLTPEYKIGMERLVKTKTPPMKALELWRESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDA  261 (399)
Q Consensus       182 a~~~~~~apl~~L~~i~l~~l~~~~~~g~~~~v~~~G~~VsLsdL~~~~pvVLvFyRg~gCP~Cr~el~~L~e~~pef~a  261 (399)
                      .+++|+.||.|.|++.                   +|++++|+++ +++++||.|++..|||.|+.++.+|++.++++++
T Consensus         3 ~l~vG~~aPdF~l~~~-------------------~G~~~~l~d~-~Gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~~~   62 (157)
T 4g2e_A            3 MVEIGELAPDFELPDT-------------------ELKKVKLSAL-KGKVVVLAFYPAAFTQVCTKEMCTFRDSMAKFNQ   62 (157)
T ss_dssp             CCCTTSBCCCCEEEBT-------------------TSCEEEGGGG-TTSCEEEEECSCTTCCC------CCSCGGGGGGG
T ss_pred             cCCCCCCCcCeEeECC-------------------CCCEEeHHHH-CCCeEEEEecCCCCCCccccchhhcccccccccc
Confidence            5789999998877766                   5999999996 7789999999999999999999999999999999


Q ss_pred             cCCeEEEEecCChhhHHhhhcC-CCCCceeEeccchHHHHHhCCCcccccccccccccCHHHHHHHHHHHhcCCccccCC
Q 015842          262 LGIQLFAVLHEYIESEVKDFWP-RYWGGVVVYDQGMEFFKALGGGKLLKDKFLSGFLLNPRAIANYKRARTLGVEQNFKG  340 (399)
Q Consensus       262 lGV~LVaIspE~~e~~ik~F~~-~~l~f~VLsDp~r~lYkaLGl~r~~r~s~lsgfl~~P~v~~~~~rA~~~G~~gn~~G  340 (399)
                      .|+.+|+|+.++++. ++.|.+ +.++|++++|++++++++||+..    .      .             .+    ..|
T Consensus        63 ~~~~~v~vs~d~~~~-~~~~~~~~~~~~p~l~D~~~~v~~~ygv~~----~------~-------------~~----~~~  114 (157)
T 4g2e_A           63 VNAVVLGISVDPPFS-NKAFKEHNKLNFTILSDYNREVVKKYNVAW----E------F-------------PA----LPG  114 (157)
T ss_dssp             CSSEEEEEESSCHHH-HHHHHHHTTCCSEEEECTTSHHHHHTTCEE----E------C-------------TT----STT
T ss_pred             cCceEeeecccchhH-HHHHHHHcCCcEEEEEcCCcHHHHHcCCcc----c------c-------------cc----CCC
Confidence            999999999998875 788885 78999999999999999999852    0      0             01    123


Q ss_pred             CCcccceEEEEecCCCcEEEEEecCCCCCCCCHHHHHHHHHhh
Q 015842          341 EGEIKGGLFIVGRGRSGIAYQFIERNFGDWAPLAEVIEICTQL  383 (399)
Q Consensus       341 D~~qLGGtFVId~gGg~I~yah~d~d~gDrad~eeVLaAl~~l  383 (399)
                      .....|++||||++| +|+|.|+..++.+++++++|++++++|
T Consensus       115 ~~~~~p~tflID~~G-~I~~~~~~~~~~~~~~~~eil~~l~~L  156 (157)
T 4g2e_A          115 YVLAKRAVFVIDKEG-KVRYKWVSDDPTKEPPYDEIEKVVKSL  156 (157)
T ss_dssp             CEEECEEEEEECTTS-BEEEEEEESSTTCCCCHHHHHHHHHHT
T ss_pred             cceeeeeEEEECCCC-EEEEEEECCCCCCCCCHHHHHHHHHHh
Confidence            345679999999996 999999999999999999999999886

>3mng_A Peroxiredoxin-5, mitochondrial; peroxidase, PRXV, substrate analog, DTT, oxidoreductase; 1.45A {Homo sapiens} SCOP: c.47.1.10 PDB: 2vl3_A 1oc3_A 2vl2_A 2vl9_A 1urm_A 1hd2_A 1h4o_A

Probab=99.88  E-value=4e-22  Score=179.47  Aligned_cols=154  Identities=13%  Similarity=0.055  Sum_probs=124.8

Q ss_pred             CCCCCCCCCCCccccc-CccccccchhhhcccccccccCCCceechhhccCCCEEEEeecCCCCcchH-HHHHHHHhccc
Q 015842          180 QAPPVNEKVAPYSAIE-NISIQKLTPEYKIGMERLVKTKTPPMKALELWRESPAVLLCIRRPGCIMCR-AEAHQLYAKKP  257 (399)
Q Consensus       180 ~~a~~~~~~apl~~L~-~i~l~~l~~~~~~g~~~~v~~~G~~VsLsdL~~~~pvVLvFyRg~gCP~Cr-~el~~L~e~~p  257 (399)
                      .+++++|+.||.|.|+ +.                   +|++++|+++++++++||+||+..|||.|+ .|+..|++.++
T Consensus        12 ~~~~~vG~~aPdf~l~~~~-------------------~g~~v~L~d~~~gk~vvL~f~pa~wcp~C~~~e~p~l~~~~~   72 (173)
T 3mng_A           12 SAPIKVGDAIPAVEVFEGE-------------------PGNKVNLAELFKGKKGVLFGVPGAFTPGCSKTHLPGFVEQAE   72 (173)
T ss_dssp             -CCCCTTCBCCCCEEECSS-------------------TTCEEEHHHHTTTSEEEEEECSCTTCHHHHHTHHHHHHHTHH
T ss_pred             CCCCCCCCCCCCeEeeeCC-------------------CCCEEEhHHHhCCCcEEEEEEeCCCCCCCCHHHHHHHHHHHH
Confidence            4678999999988887 44                   499999999889889999999999999999 59999999999


Q ss_pred             hhhhcCCeEEE-EecCChhhHHhhhcC-CCCC--ceeEeccchHHHHHhCCCcccccccccccccCHHHHHHHHHHHhcC
Q 015842          258 IFDALGIQLFA-VLHEYIESEVKDFWP-RYWG--GVVVYDQGMEFFKALGGGKLLKDKFLSGFLLNPRAIANYKRARTLG  333 (399)
Q Consensus       258 ef~alGV~LVa-IspE~~e~~ik~F~~-~~l~--f~VLsDp~r~lYkaLGl~r~~r~s~lsgfl~~P~v~~~~~rA~~~G  333 (399)
                      +|++.|+.+|+ |+.+++.. .+.|.+ ..++  |++++|++.++.++||+..            ..... ..     . 
T Consensus        73 ~~~~~gv~vv~~iS~D~~~~-~~~f~~~~~~~~~fp~l~D~~~~va~~yGv~~------------~~~~~-~~-----~-  132 (173)
T 3mng_A           73 ALKAKGVQVVACLSVNDAFV-TGEWGRAHKAEGKVRLLADPTGAFGKETDLLL------------DDSLV-SI-----F-  132 (173)
T ss_dssp             HHHTTTCCEEEEEESSCHHH-HHHHHHHTTCTTTCEEEECTTCHHHHHHTCBC------------CSTTH-HH-----H-
T ss_pred             HHHhCCCEEEEEEcCCCHHH-HHHHHHHhCCCCceEEEECCChHHHHHhCCCc------------ccccc-cc-----c-
Confidence            99999999997 99998865 788875 6677  9999999999999999952            00000 00     0 


Q ss_pred             CccccCCCCcccceEEEEecCCCcEEEEEecCCCC--CCCCHHHHHHHH
Q 015842          334 VEQNFKGEGEIKGGLFIVGRGRSGIAYQFIERNFG--DWAPLAEVIEIC  380 (399)
Q Consensus       334 ~~gn~~GD~~qLGGtFVId~gGg~I~yah~d~d~g--Drad~eeVLaAl  380 (399)
                            |.....|++|||| +| +|+|.+++.+..  +..+.++||++|
T Consensus       133 ------g~~~~~r~tfvID-dG-~I~~~~v~~~~~g~~~~~~~~vl~~l  173 (173)
T 3mng_A          133 ------GNRRLKRFSMVVQ-DG-IVKALNVEPDGTGLTCSLAPNIISQL  173 (173)
T ss_dssp             ------SSCCBCCEEEEEE-TT-EEEEEEECTTSSCSSTTSHHHHHHHC
T ss_pred             ------CCcceEEEEEEEE-CC-EEEEEEEeCCCCCcchHHHHHHHHhC
Confidence                  2234579999999 96 999999999864  456777777653

>3sbc_A Peroxiredoxin TSA1; alpha-beta fold, peroxidase, cytosol, oxidoreductase; 2.80A {Saccharomyces cerevisiae}

Probab=99.87  E-value=5.6e-22  Score=186.40  Aligned_cols=165  Identities=16%  Similarity=0.072  Sum_probs=134.8

Q ss_pred             CCCCCCCCCcccccCccccccchhhhcccccccccCCCceechhhccCCCEEEEeecCCCCcchHHHHHHHHhccchhhh
Q 015842          182 PPVNEKVAPYSAIENISIQKLTPEYKIGMERLVKTKTPPMKALELWRESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDA  261 (399)
Q Consensus       182 a~~~~~~apl~~L~~i~l~~l~~~~~~g~~~~v~~~G~~VsLsdL~~~~pvVLvFyRg~gCP~Cr~el~~L~e~~pef~a  261 (399)
                      ++++|+.||.|.++..                ++.+|++|+|+++ +++++||+||...|||.|..|+.+|++.+++|++
T Consensus        22 ~~~VG~~APdF~l~a~----------------~d~~~~~vsLsd~-~GK~vVL~FyP~d~TpvCt~E~~~f~~~~~~f~~   84 (216)
T 3sbc_A           22 VAQVQKQAPTFKKTAV----------------VDGVFDEVSLDKY-KGKYVVLAFIPLAFTFVSPTEIIAFSEAAKKFEE   84 (216)
T ss_dssp             CCCTTSBCCCCCEEEE----------------ETTEEEEECGGGG-TTSEEEEEECSCTTSSHHHHHHHHHHHHHHHHHH
T ss_pred             hhhcCCcCCCCCCcce----------------ECCCCcEEehHHh-CCCeEEEEEEcCCCCCcCchhhhHHHHhHHhhcc
Confidence            3689999998877643                1234789999996 6789999999999999999999999999999999


Q ss_pred             cCCeEEEEecCChhhHHhhhcC--------CCCCceeEeccchHHHHHhCCCcccccccccccccCHHHHHHHHHHHhcC
Q 015842          262 LGIQLFAVLHEYIESEVKDFWP--------RYWGGVVVYDQGMEFFKALGGGKLLKDKFLSGFLLNPRAIANYKRARTLG  333 (399)
Q Consensus       262 lGV~LVaIspE~~e~~ik~F~~--------~~l~f~VLsDp~r~lYkaLGl~r~~r~s~lsgfl~~P~v~~~~~rA~~~G  333 (399)
                      +|+.+|+||.+++.. .+.|.+        ..++|++++|+++++.++||+-.             +             
T Consensus        85 ~g~~vigiS~Ds~~s-h~aw~~~~~~~~~~~~l~fpllsD~~~~vak~YGv~~-------------~-------------  137 (216)
T 3sbc_A           85 QGAQVLFASTDSEYS-LLAWTNIPRKEGGLGPINIPLLADTNHSLSRDYGVLI-------------E-------------  137 (216)
T ss_dssp             TTEEEEEEESSCHHH-HHHHHTSCGGGTCCCSCSSCEEECTTSHHHHHHTCEE-------------T-------------
T ss_pred             CCceEEEeecCchhh-HHHHHHHHHHhCCccCcccceEeCCCCHHHHHcCCee-------------c-------------
Confidence            999999999999875 677763        14899999999999999999841             1             


Q ss_pred             CccccCCCCcccceEEEEecCCCcEEEEEecCCCCCCCCHHHHHHHHHhhhhhh----------ccccccccccc
Q 015842          334 VEQNFKGEGEIKGGLFIVGRGRSGIAYQFIERNFGDWAPLAEVIEICTQLQDQQ----------RDQSETIKTSQ  398 (399)
Q Consensus       334 ~~gn~~GD~~qLGGtFVId~gGg~I~yah~d~d~gDrad~eeVLaAl~~l~~~~----------~~~~~~~~~~~  398 (399)
                            .++...+|+||||++| +|+|..+...... .+++|+|++++++|-..          ++|.++|+.+.
T Consensus       138 ------~~g~~~R~tFiID~~G-~Ir~~~v~~~~~g-rn~dEiLr~l~AlQ~~~~~~~~~Pa~W~~G~~~i~p~~  204 (216)
T 3sbc_A          138 ------EEGVALRGLFIIDPKG-VIRHITINDLPVG-RNVDEALRLVEAFQWTDKNGTVLPCNWTPGAATIKPTV  204 (216)
T ss_dssp             ------TTTEECEEEEEECTTS-BEEEEEEECTTBC-CCHHHHHHHHHHHHHHHHHCCBBCTTCCTTSCCBCCST
T ss_pred             ------cCCceeeEEEEECCCC-eEEEEEEcCCCCC-CCHHHHHHHHHHhhhHhhcCCCcCCCCCCCCceecCCH
Confidence                  1234568999999996 9999998775544 48899999999997222          67778887653

>3keb_A Probable thiol peroxidase; structural genomics, APC40679, PSI-2, Pro structure initiative; HET: MSE; 1.80A {Chromobacterium violaceum}

Probab=99.87  E-value=1.8e-21  Score=183.72  Aligned_cols=153  Identities=10%  Similarity=0.094  Sum_probs=129.3

Q ss_pred             CCCCCCCCCCCCcccccCccccccchhhhcccccccccCCCceechhhccCCCEEEEeecCCCCcchH-----HHHHHHH
Q 015842          179 IQAPPVNEKVAPYSAIENISIQKLTPEYKIGMERLVKTKTPPMKALELWRESPAVLLCIRRPGCIMCR-----AEAHQLY  253 (399)
Q Consensus       179 ~~~a~~~~~~apl~~L~~i~l~~l~~~~~~g~~~~v~~~G~~VsLsdL~~~~pvVLvFyRg~gCP~Cr-----~el~~L~  253 (399)
                      ....+++|+.||.|.|++.                   +|++|+|++ ++++++||+||+..|||+|+     .++..|+
T Consensus        18 ~g~~l~vG~~APdFtL~d~-------------------~G~~vsLsd-~~Gk~vVL~F~ps~~cp~C~~~~~~~El~~~~   77 (224)
T 3keb_A           18 IGDFPRKGDYLPSFMLVDD-------------------QKHDAALES-FSHTPKLIVTLLSVDEDEHAGLLLLRETRRFL   77 (224)
T ss_dssp             BSCCCCTTCBCCCCEEEET-------------------TSCEEEGGG-GTTCCEEEEECSCTTCSTTTSHHHHHHHHHHH
T ss_pred             ecCcCCCCCCCCCeEEECC-------------------CCCEEeHHH-hCCCcEEEEEEeCCCCCCCCCCccHHHHHHHH
Confidence            3456789999998887665                   499999999 57889999999999999999     9999999


Q ss_pred             hccchhhhcCCeEEEEecCChhhHHhhhcC-CCC-CceeEecc-chHHHHHhCCCcccccccccccccCHHHHHHHHHHH
Q 015842          254 AKKPIFDALGIQLFAVLHEYIESEVKDFWP-RYW-GGVVVYDQ-GMEFFKALGGGKLLKDKFLSGFLLNPRAIANYKRAR  330 (399)
Q Consensus       254 e~~pef~alGV~LVaIspE~~e~~ik~F~~-~~l-~f~VLsDp-~r~lYkaLGl~r~~r~s~lsgfl~~P~v~~~~~rA~  330 (399)
                      +.   +  .|+.+|+||.+++.. ++.|.+ ..+ +|++++|+ +..+.++||+..           . .          
T Consensus        78 ~~---~--~gv~VvgIS~Ds~~~-~~~f~~~~gl~~fplLsD~~~~~vak~yGv~~-----------~-~----------  129 (224)
T 3keb_A           78 DS---W--PHLKLIVITVDSPSS-LARARHEHGLPNIALLSTLRGRDFHKRYGVLI-----------T-E----------  129 (224)
T ss_dssp             TT---C--TTSEEEEEESSCHHH-HHHHHHHHCCTTCEEEESTTCTTHHHHTTCBC-----------C-S----------
T ss_pred             HH---c--CCCEEEEEECCCHHH-HHHHHHHcCCCCceEEEcCCchHHHHHhCCcc-----------c-c----------
Confidence            88   4  799999999999875 788875 667 69999999 699999999951           0 0          


Q ss_pred             hcCCccccCCCCcccceEEEEecCCCcEEEEEecCCCCCCCCHHHHHHHHHhhhhhh
Q 015842          331 TLGVEQNFKGEGEIKGGLFIVGRGRSGIAYQFIERNFGDWAPLAEVIEICTQLQDQQ  387 (399)
Q Consensus       331 ~~G~~gn~~GD~~qLGGtFVId~gGg~I~yah~d~d~gDrad~eeVLaAl~~l~~~~  387 (399)
                           +.+  .++..|++||||++| +|+|.++..++.++++++++|++|+.+.++.
T Consensus       130 -----~~~--~G~~~p~tfvID~dG-~I~~~~~~~~~~~~pd~~evl~~L~~l~~~~  178 (224)
T 3keb_A          130 -----YPL--SGYTSPAIILADAAN-VVHYSERLANTRDFFDFDAIEKLLQEGEQQA  178 (224)
T ss_dssp             -----TTS--TTCBCCEEEEECTTC-BEEEEEECSBTTCCCCHHHHHHHHHHHHHHC
T ss_pred             -----ccc--cCCccCEEEEEcCCC-EEEEEEecCCCCCCCCHHHHHHHHHHhhhcc
Confidence                 000  124579999999996 9999999999999999999999999997655

>3tue_A Tryparedoxin peroxidase; thioredoxin fold, peroxiredoxin, oxidoreductase; 3.00A {Leishmania major} PDB: 1e2y_A

Probab=99.87  E-value=9.5e-22  Score=185.19  Aligned_cols=165  Identities=12%  Similarity=0.084  Sum_probs=125.9

Q ss_pred             CCCCCCCCCCcccccCccccccchhhhcccccccccCCCceechhhccCCCEEEEeecCCCCcchHHHHHHHHhccchhh
Q 015842          181 APPVNEKVAPYSAIENISIQKLTPEYKIGMERLVKTKTPPMKALELWRESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFD  260 (399)
Q Consensus       181 ~a~~~~~~apl~~L~~i~l~~l~~~~~~g~~~~v~~~G~~VsLsdL~~~~pvVLvFyRg~gCP~Cr~el~~L~e~~pef~  260 (399)
                      ...++|+.||.|.++.. +.              +.+|++|+|+++ +++++||+||...|||.|..|+++|++.+++|+
T Consensus        24 ~~~~vG~~APdF~~~a~-l~--------------d~~g~~vsLsd~-~GK~vVL~FyP~d~TpvCt~E~~~f~~~~~eF~   87 (219)
T 3tue_A           24 GNAKINSPAPSFEEVAL-MP--------------NGSFKKISLSSY-KGKWVVLFFYPLDFTFVCPTEVIAFSDSVSRFN   87 (219)
T ss_dssp             CCCCTTSBCCCCEEEEE-CT--------------TSCEEEEEGGGG-TTSEEEEEECSCTTCSSCCHHHHHHHTTHHHHH
T ss_pred             cccccCCcCCCCccccc-cc--------------CCCCcEEehHHh-CCCEEEEEEecccCCCCCchhHhhHHHHHhhhc
Confidence            34589999998874322 11              225889999996 667999999999999999999999999999999


Q ss_pred             hcCCeEEEEecCChhhHHhhhcC--------CCCCceeEeccchHHHHHhCCCcccccccccccccCHHHHHHHHHHHhc
Q 015842          261 ALGIQLFAVLHEYIESEVKDFWP--------RYWGGVVVYDQGMEFFKALGGGKLLKDKFLSGFLLNPRAIANYKRARTL  332 (399)
Q Consensus       261 alGV~LVaIspE~~e~~ik~F~~--------~~l~f~VLsDp~r~lYkaLGl~r~~r~s~lsgfl~~P~v~~~~~rA~~~  332 (399)
                      ++|+.||+||.++... .+.|..        ..++|++++|+++++.++||+-.             +            
T Consensus        88 ~~g~~vigiS~Ds~~s-h~~w~~~~~~~~~~~~l~fpllsD~~~~va~~yGv~~-------------~------------  141 (219)
T 3tue_A           88 ELNCEVLACSIDSEYA-HLQWTLQDRKKGGLGTMAIPILADKTKNIARSYGVLE-------------E------------  141 (219)
T ss_dssp             TTTEEEEEEESSCHHH-HHHHHHSCGGGTCCCSCSSCEEECTTSHHHHHTTCEE-------------T------------
T ss_pred             cCCcEEEEeeCCchhh-HHHHhhhhHHhcCccccccccccCcccHHHHHcCCcc-------------c------------
Confidence            9999999999999875 677752        25899999999999999999841             0            


Q ss_pred             CCccccCCCCcccceEEEEecCCCcEEEEEecCCCCCCCCHHHHHHHHHhhhhhh----------ccccccccc
Q 015842          333 GVEQNFKGEGEIKGGLFIVGRGRSGIAYQFIERNFGDWAPLAEVIEICTQLQDQQ----------RDQSETIKT  396 (399)
Q Consensus       333 G~~gn~~GD~~qLGGtFVId~gGg~I~yah~d~d~gDrad~eeVLaAl~~l~~~~----------~~~~~~~~~  396 (399)
                             ..+....|+||||++| +|+|.++......| +++|||++++++|-..          ++|.++|+.
T Consensus       142 -------~~g~~~R~tFiIDp~g-~Ir~~~~~~~~~gr-~~~EvLr~l~aLQ~~~~~~~~~Pa~W~~G~~~i~p  206 (219)
T 3tue_A          142 -------SQGVAYRGLFIIDPHG-MLRQITVNDMPVGR-SVEEVLRLLEAFQFVEKHGEVCPANWKKGDPGMKP  206 (219)
T ss_dssp             -------TTTEECEEEEEECTTS-BEEEEEEECTTCCC-CHHHHHHHHHHHHHHHHC-----------------
T ss_pred             -------CCCeeEEEEEEECCCC-eEEEEEEecCCCCC-CHHHHHHHHHHhhhHHhcCCCcCCCCCCCCccccC
Confidence                   1123457999999996 99999976644333 7799999999997432          667777764

>3p7x_A Probable thiol peroxidase; thioredoxin fold, oxidoreductase; HET: PG4; 1.96A {Staphylococcus aureus} SCOP: c.47.1.0

Probab=99.86  E-value=4.5e-21  Score=167.73  Aligned_cols=147  Identities=7%  Similarity=0.086  Sum_probs=127.1

Q ss_pred             CCCCCCCCCCCcccccCccccccchhhhcccccccccCCCceechhhccCCCEEEEeecCCCCcchHHHHHHHHhccchh
Q 015842          180 QAPPVNEKVAPYSAIENISIQKLTPEYKIGMERLVKTKTPPMKALELWRESPAVLLCIRRPGCIMCRAEAHQLYAKKPIF  259 (399)
Q Consensus       180 ~~a~~~~~~apl~~L~~i~l~~l~~~~~~g~~~~v~~~G~~VsLsdL~~~~pvVLvFyRg~gCP~Cr~el~~L~e~~pef  259 (399)
                      ...+++|+.+|.|.|++.                   +|++++++++ +++++||.|++..|||.|+.++..|++++.+ 
T Consensus        17 ~~~l~~G~~aP~f~l~~~-------------------~G~~~~l~~~-~Gk~vvl~f~~~~~c~~C~~~~~~l~~~~~~-   75 (166)
T 3p7x_A           17 GQQINEGDFAPDFTVLDN-------------------DLNQVTLADY-AGKKKLISVVPSIDTGVCDQQTRKFNSDASK-   75 (166)
T ss_dssp             SCCCCTTSBCCCCEEECT-------------------TSCEEEGGGG-TTSCEEEEECSCTTSHHHHHHHHHHHHHSCT-
T ss_pred             cccCCCCCCCCCeEEEcC-------------------CCCEEeHHHh-CCCcEEEEEECCCCCCccHHHHHHHHHHhhc-
Confidence            457789999997777665                   5999999996 7789999999999999999999999999888 


Q ss_pred             hhcCCeEEEEecCChhhHHhhhcC-CCC-CceeEecc-chHHHHHhCCCcccccccccccccCHHHHHHHHHHHhcCCcc
Q 015842          260 DALGIQLFAVLHEYIESEVKDFWP-RYW-GGVVVYDQ-GMEFFKALGGGKLLKDKFLSGFLLNPRAIANYKRARTLGVEQ  336 (399)
Q Consensus       260 ~alGV~LVaIspE~~e~~ik~F~~-~~l-~f~VLsDp-~r~lYkaLGl~r~~r~s~lsgfl~~P~v~~~~~rA~~~G~~g  336 (399)
                        .|+++|+|+.++++. ++.|.+ ..+ +|++++|+ +..++++||+..           . .                
T Consensus        76 --~~~~vv~is~d~~~~-~~~~~~~~~~~~~~~l~D~~~~~~~~~~gv~~-----------~-~----------------  124 (166)
T 3p7x_A           76 --EEGIVLTISADLPFA-QKRWCASAGLDNVITLSDHRDLSFGENYGVVM-----------E-E----------------  124 (166)
T ss_dssp             --TTSEEEEEESSCHHH-HHHHHHHHTCSSCEEEECTTTCHHHHHHTCEE-----------T-T----------------
T ss_pred             --CCCEEEEEECCCHHH-HHHHHHHcCCCceEEccCCchhHHHHHhCCcc-----------c-c----------------
Confidence              799999999998875 788875 678 89999999 999999999851           0 0                


Q ss_pred             ccCCCCcccceEEEEecCCCcEEEEEecCCCCCCCCHHHHHHHHHhh
Q 015842          337 NFKGEGEIKGGLFIVGRGRSGIAYQFIERNFGDWAPLAEVIEICTQL  383 (399)
Q Consensus       337 n~~GD~~qLGGtFVId~gGg~I~yah~d~d~gDrad~eeVLaAl~~l  383 (399)
                          .+...|.+||||++| +|+|.|+..+..+++++++++++++++
T Consensus       125 ----~g~~~p~~~liD~~G-~i~~~~~~~~~~~~~~~~~il~~l~~l  166 (166)
T 3p7x_A          125 ----LRLLARAVFVLDADN-KVVYKEIVSEGTDFPDFDAALAAYKNI  166 (166)
T ss_dssp             ----TTEECCEEEEECTTC-BEEEEEECSBTTSCCCHHHHHHHHHTC
T ss_pred             ----CCceeeEEEEECCCC-eEEEEEEcCCcccCCCHHHHHHHHhcC
Confidence                123468999999997 999999999999999999999999764

>3drn_A Peroxiredoxin, bacterioferritin comigratory prote homolog; bacterioferritin comigratory protein, oxidore; HET: CIT; 2.15A {Sulfolobus solfataricus} SCOP: c.47.1.0

Probab=99.85  E-value=8.1e-21  Score=165.00  Aligned_cols=155  Identities=12%  Similarity=0.054  Sum_probs=127.8

Q ss_pred             CCCCCCCCcccccCccccccchhhhcccccccccCCCceechhhccCCCEEEEeecCCCCcchHHHHHHHHhccchhhhc
Q 015842          183 PVNEKVAPYSAIENISIQKLTPEYKIGMERLVKTKTPPMKALELWRESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDAL  262 (399)
Q Consensus       183 ~~~~~~apl~~L~~i~l~~l~~~~~~g~~~~v~~~G~~VsLsdL~~~~pvVLvFyRg~gCP~Cr~el~~L~e~~pef~al  262 (399)
                      +++|+.+|.|.|++.                   +|++++++++..+.|+||.|+|..|||.|+.++..|.+++.++++.
T Consensus         2 l~~G~~~P~f~l~~~-------------------~G~~~~l~~~~gk~~vvl~F~~a~~C~~C~~~~~~l~~~~~~~~~~   62 (161)
T 3drn_A            2 VKVGDKAPLFEGIAD-------------------NGEKISLSDYIGKHNIVLYFYPKDDTPGSTREASAFRDNWDLLKDY   62 (161)
T ss_dssp             CCTTSBCCCCEEEET-------------------TSCEEEGGGTTTTSEEEEEECSCTTCHHHHHHHHHHHHTHHHHHTT
T ss_pred             CCCCCcCCCeEeecC-------------------CCCEEEHHHhcCCCCEEEEEEcCCCCCchHHHHHHHHHHHHHHHHc
Confidence            468899997776655                   4999999997443349999999999999999999999999999999


Q ss_pred             CCeEEEEecCChhhHHhhhcC-CCCCceeEeccchHHHHHhCCCcccccccccccccCHHHHHHHHHHHhcCCccccCCC
Q 015842          263 GIQLFAVLHEYIESEVKDFWP-RYWGGVVVYDQGMEFFKALGGGKLLKDKFLSGFLLNPRAIANYKRARTLGVEQNFKGE  341 (399)
Q Consensus       263 GV~LVaIspE~~e~~ik~F~~-~~l~f~VLsDp~r~lYkaLGl~r~~r~s~lsgfl~~P~v~~~~~rA~~~G~~gn~~GD  341 (399)
                      |+++|+|+.++++. ++.|.+ ..++|++++|++..++++||+.                                  |.
T Consensus        63 ~v~vv~vs~d~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~v~----------------------------------~~  107 (161)
T 3drn_A           63 DVVVIGVSSDDINS-HKRFKEKYKLPFILVSDPDKKIRELYGAK----------------------------------GF  107 (161)
T ss_dssp             CEEEEEEESCCHHH-HHHHHHHTTCCSEEEECTTSHHHHHTTCC----------------------------------CS
T ss_pred             CCEEEEEeCCCHHH-HHHHHHHhCCCceEEECCcHHHHHHcCCC----------------------------------Cc
Confidence            99999999998765 788885 7889999999999999999884                                  11


Q ss_pred             CcccceEEEEecCCCcEEEEEecCCCCCCCCHHHHHHHHHhhhhhhcccccc
Q 015842          342 GEIKGGLFIVGRGRSGIAYQFIERNFGDWAPLAEVIEICTQLQDQQRDQSET  393 (399)
Q Consensus       342 ~~qLGGtFVId~gGg~I~yah~d~d~gDrad~eeVLaAl~~l~~~~~~~~~~  393 (399)
                      ....|.+||||++| +|++.|.+. ......++++++++++++...+.++-+
T Consensus       108 ~~~~P~~~lid~~G-~i~~~~~g~-~~~~~~~~~il~~l~~l~~~~~~~~~~  157 (161)
T 3drn_A          108 ILPARITFVIDKKG-IIRHIYNSQ-MNPANHVNEALKALKQIKEEEISLEHH  157 (161)
T ss_dssp             SSCCCEEEEECTTS-BEEEEEECS-SCTTHHHHHHHHHHHHHHHHHHC----
T ss_pred             CcccceEEEECCCC-EEEEEEecC-CCCCcCHHHHHHHHHHhhhhhcchhhc
Confidence            23468999999996 899999885 445567899999999998877766544

>3uma_A Hypothetical peroxiredoxin protein; nysgrc, PSI biology, structural genomics, NEW YORK structura genomics research consortium; 2.20A {Sinorhizobium meliloti}

Probab=99.85  E-value=3.1e-21  Score=175.28  Aligned_cols=152  Identities=13%  Similarity=0.048  Sum_probs=125.1

Q ss_pred             CCCCCCCCCcccccCccccccchhhhcccccccccCC-CceechhhccCCCEEEEeecCCCCcchHH-HHHHHHhccchh
Q 015842          182 PPVNEKVAPYSAIENISIQKLTPEYKIGMERLVKTKT-PPMKALELWRESPAVLLCIRRPGCIMCRA-EAHQLYAKKPIF  259 (399)
Q Consensus       182 a~~~~~~apl~~L~~i~l~~l~~~~~~g~~~~v~~~G-~~VsLsdL~~~~pvVLvFyRg~gCP~Cr~-el~~L~e~~pef  259 (399)
                      ++++|+.+|.|.|+++.                 .+| ++++|+++++++++||+||+..|||.|+. |+..|++.+++|
T Consensus        25 ~l~vG~~aPdf~l~~~~-----------------~~G~~~v~L~d~~~Gk~vvL~f~~a~wcp~C~~~e~p~l~~~~~~~   87 (184)
T 3uma_A           25 TIAVGDKLPNATFKEKT-----------------ADGPVEVTTELLFKGKRVVLFAVPGAFTPTCSLNHLPGYLENRDAI   87 (184)
T ss_dssp             CCCTTCBCCCCEEEEEE-----------------TTEEEEEEHHHHHTTSEEEEEEESCTTCHHHHHTHHHHHHHTHHHH
T ss_pred             cCCCCCCCCCcEeeccc-----------------CCCceEEeHHHHhCCCCEEEEEEcCCCCCCcCHHHHHHHHHHHHHH
Confidence            47899999977776651                 138 89999998888899999999999999999 899999999999


Q ss_pred             hhcCCe-EEEEecCChhhHHhhhcC-CCCC--ceeEeccchHHHHHhCCCcccccccccccccCHHHHHHHHHHHhcCCc
Q 015842          260 DALGIQ-LFAVLHEYIESEVKDFWP-RYWG--GVVVYDQGMEFFKALGGGKLLKDKFLSGFLLNPRAIANYKRARTLGVE  335 (399)
Q Consensus       260 ~alGV~-LVaIspE~~e~~ik~F~~-~~l~--f~VLsDp~r~lYkaLGl~r~~r~s~lsgfl~~P~v~~~~~rA~~~G~~  335 (399)
                      ++.|+. +|+|+.+++.. .+.|.+ ..++  |++++|++.++.++||+...            +.         ..|+.
T Consensus        88 ~~~gv~~vv~Is~d~~~~-~~~f~~~~~~~~~fp~l~D~~~~va~~yGv~~~------------~~---------~~g~g  145 (184)
T 3uma_A           88 LARGVDDIAVVAVNDLHV-MGAWATHSGGMGKIHFLSDWNAAFTKAIGMEID------------LS---------AGTLG  145 (184)
T ss_dssp             HTTTCCEEEEEESSCHHH-HHHHHHHHTCTTTSEEEECTTCHHHHHTTCEEE------------EG---------GGTCE
T ss_pred             HHcCCCEEEEEECCCHHH-HHHHHHHhCCCCceEEEEcCchHHHHHcCCcee------------cc---------ccCCc
Confidence            999999 99999998865 788875 6788  99999999999999999520            10         01110


Q ss_pred             cccCCCCcccceEEEEecCCCcEEEEEecCCCCC--CCCHHHHHHHH
Q 015842          336 QNFKGEGEIKGGLFIVGRGRSGIAYQFIERNFGD--WAPLAEVIEIC  380 (399)
Q Consensus       336 gn~~GD~~qLGGtFVId~gGg~I~yah~d~d~gD--rad~eeVLaAl  380 (399)
                            ....|++|||+ +| +|+|.|++.+.++  +.+.++||+.|
T Consensus       146 ------~~~~r~tfiId-dG-~I~~~~~~~~~g~~~~~~~~~vL~~L  184 (184)
T 3uma_A          146 ------IRSKRYSMLVE-DG-VVKALNIEESPGQATASGAAAMLELL  184 (184)
T ss_dssp             ------EEECCEEEEEE-TT-EEEEEEECSSTTCCSTTSHHHHHHHC
T ss_pred             ------ccceeEEEEEC-CC-EEEEEEEeCCCCCCcCCCHHHHHhhC
Confidence                  12458999997 75 9999999997754  88999999864

>1psq_A Probable thiol peroxidase; structural genomics, NYSGXRC, PSI, structure initiative, NEW YORK SGX research center for STRU genomics; 2.30A {Streptococcus pneumoniae} SCOP: c.47.1.10

Probab=99.85  E-value=1.6e-20  Score=163.76  Aligned_cols=148  Identities=9%  Similarity=0.033  Sum_probs=125.9

Q ss_pred             CCCCCCCCCCCcccccCccccccchhhhcccccccccCCCceechhhccCCCEEEEeecCCCCcchHHHHHHHHhccchh
Q 015842          180 QAPPVNEKVAPYSAIENISIQKLTPEYKIGMERLVKTKTPPMKALELWRESPAVLLCIRRPGCIMCRAEAHQLYAKKPIF  259 (399)
Q Consensus       180 ~~a~~~~~~apl~~L~~i~l~~l~~~~~~g~~~~v~~~G~~VsLsdL~~~~pvVLvFyRg~gCP~Cr~el~~L~e~~pef  259 (399)
                      ...+.+|+.+|.|.|++.                   +|++++++++ +++++||.|++..|||.|+.++..|+++++++
T Consensus        13 ~~~~~~G~~~P~f~l~~~-------------------~G~~v~l~~~-~gk~vvl~F~~~~~c~~C~~~~~~l~~~~~~~   72 (163)
T 1psq_A           13 GKQLQVGDKALDFSLTTT-------------------DLSKKSLADF-DGKKKVLSVVPSIDTGICSTQTRRFNEELAGL   72 (163)
T ss_dssp             SCCCCTTSBCCCCEEECT-------------------TSCEEEGGGG-TTSEEEEEECSCTTSHHHHHHHHHHHHHTTTC
T ss_pred             cCCCCCCCCCCCEEEEcC-------------------CCcEeeHHHh-CCCEEEEEEECCCCCCccHHHHHHHHHHHHHc
Confidence            345788999997777655                   4999999996 67789999999999999999999999999999


Q ss_pred             hhcCCeEEEEecCChhhHHhhhcC-CCC-CceeEec-cchHHHHHhCCCcccccccccccccCHHHHHHHHHHHhcCCcc
Q 015842          260 DALGIQLFAVLHEYIESEVKDFWP-RYW-GGVVVYD-QGMEFFKALGGGKLLKDKFLSGFLLNPRAIANYKRARTLGVEQ  336 (399)
Q Consensus       260 ~alGV~LVaIspE~~e~~ik~F~~-~~l-~f~VLsD-p~r~lYkaLGl~r~~r~s~lsgfl~~P~v~~~~~rA~~~G~~g  336 (399)
                        .|+++|+|+.++++. ++.|.+ ..+ +|++++| ++..++++||+..           . +                
T Consensus        73 --~~v~vv~is~d~~~~-~~~~~~~~~~~~~~~l~D~~~~~~~~~~gv~~-----------~-~----------------  121 (163)
T 1psq_A           73 --DNTVVLTVSMDLPFA-QKRWCGAEGLDNAIMLSDYFDHSFGRDYALLI-----------N-E----------------  121 (163)
T ss_dssp             --TTEEEEEEESSCHHH-HHHHHHHHTCTTSEEEECTTTCHHHHHHTCBC-----------T-T----------------
T ss_pred             --CCcEEEEEECCCHHH-HHHHHHhcCCCCcEEecCCchhHHHHHhCCcc-----------c-c----------------
Confidence              799999999988764 777875 678 8999999 8999999999851           0 0                


Q ss_pred             ccCCCCcccceEEEEecCCCcEEEEEecCCCCCCCCHHHHHHHHHhh
Q 015842          337 NFKGEGEIKGGLFIVGRGRSGIAYQFIERNFGDWAPLAEVIEICTQL  383 (399)
Q Consensus       337 n~~GD~~qLGGtFVId~gGg~I~yah~d~d~gDrad~eeVLaAl~~l  383 (399)
                          .+...|.+||||++| +|++.|.+.+..+++++++|+++++++
T Consensus       122 ----~g~~~p~~~liD~~G-~i~~~~~g~~~~~~~~~~~~l~~l~~l  163 (163)
T 1psq_A          122 ----WHLLARAVFVLDTDN-TIRYVEYVDNINSEPNFEAAIAAAKAL  163 (163)
T ss_dssp             ----TCSBCCEEEEECTTC-BEEEEEECSBTTSCCCHHHHHHHHHHC
T ss_pred             ----CCceEEEEEEEcCCC-eEEEEEecCCcCCCCCHHHHHHHHHhC
Confidence                012468999999997 999999999999999999999998864

>1tp9_A Peroxiredoxin, PRX D (type II); oligomer, thioredoxin fold, oxidoreductase; 1.62A {Populus trichocarpa} SCOP: c.47.1.10

Probab=99.85  E-value=4.1e-21  Score=168.23  Aligned_cols=151  Identities=13%  Similarity=0.117  Sum_probs=122.4

Q ss_pred             CCCCCCCCCcccccCccccccchhhhcccccccccCC--CceechhhccCCCEEEEeecCCCCcchH-HHHHHHHhccch
Q 015842          182 PPVNEKVAPYSAIENISIQKLTPEYKIGMERLVKTKT--PPMKALELWRESPAVLLCIRRPGCIMCR-AEAHQLYAKKPI  258 (399)
Q Consensus       182 a~~~~~~apl~~L~~i~l~~l~~~~~~g~~~~v~~~G--~~VsLsdL~~~~pvVLvFyRg~gCP~Cr-~el~~L~e~~pe  258 (399)
                      .+++|+.+|.|.|+..                 +.+|  ++++++++++++++||.|++..|||.|+ .++.+|++.+++
T Consensus         3 ~~~~G~~aP~f~l~~~-----------------~~~G~~~~~~l~~~~~gk~vvl~f~~~~~c~~C~~~e~~~l~~~~~~   65 (162)
T 1tp9_A            3 PIAVGDVLPDGKLAYF-----------------DEQDQLQEVSVHSLVAGKKVILFGVPGAFTPTCSLKHVPGFIEKAGE   65 (162)
T ss_dssp             CCCTTCBCCCCEEEEE-----------------CTTSCEEEEESHHHHTTSEEEEEEESCTTCHHHHHTHHHHHHHHHHH
T ss_pred             cCCCCCCCCCeEEEee-----------------cCCCCceeEeHHHHhCCCcEEEEEeCCCCCCCCCHHHHHHHHHHHHH
Confidence            3578999997766421                 1148  9999999778889999999999999999 899999999999


Q ss_pred             hhhcCCe-EEEEecCChhhHHhhhcC-CCC--CceeEeccchHHHHHhCCCcccccccccccccCHHHHHHHHHHHhcCC
Q 015842          259 FDALGIQ-LFAVLHEYIESEVKDFWP-RYW--GGVVVYDQGMEFFKALGGGKLLKDKFLSGFLLNPRAIANYKRARTLGV  334 (399)
Q Consensus       259 f~alGV~-LVaIspE~~e~~ik~F~~-~~l--~f~VLsDp~r~lYkaLGl~r~~r~s~lsgfl~~P~v~~~~~rA~~~G~  334 (399)
                      +++.|++ +|+|+.++++. ++.|.+ ..+  +|++++|++.+++++||+..    .      ..+           .|+
T Consensus        66 ~~~~~v~~vv~Is~d~~~~-~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~~----~------~~~-----------~g~  123 (162)
T 1tp9_A           66 LKSKGVTEILCISVNDPFV-MKAWAKSYPENKHVKFLADGSATYTHALGLEL----D------LQE-----------KGL  123 (162)
T ss_dssp             HHHTTCCCEEEEESSCHHH-HHHHHHTCTTCSSEEEEECTTSHHHHHTTCEE----E------ETT-----------TTS
T ss_pred             HHHCCCCEEEEEECCCHHH-HHHHHHhcCCCCCeEEEECCCchHHHHcCccc----c------ccc-----------CCC
Confidence            9999999 99999998765 788875 667  89999999999999999851    0      000           011


Q ss_pred             ccccCCCCcccceEEEEecCCCcEEEEEecCCCCCCC--CHHHHHHHH
Q 015842          335 EQNFKGEGEIKGGLFIVGRGRSGIAYQFIERNFGDWA--PLAEVIEIC  380 (399)
Q Consensus       335 ~gn~~GD~~qLGGtFVId~gGg~I~yah~d~d~gDra--d~eeVLaAl  380 (399)
                            .....|++|||| +| +|+|.|++. .++++  ++++||++|
T Consensus       124 ------~~~~~p~~~vid-~G-~i~~~~~~~-~~~~~~~~~~~vl~~l  162 (162)
T 1tp9_A          124 ------GTRSRRFALLVD-DL-KVKAANIEG-GGEFTVSSAEDILKDL  162 (162)
T ss_dssp             ------EEEECCEEEEEE-TT-EEEEEEECS-SSCCSSCSHHHHHTTC
T ss_pred             ------CccceeEEEEEE-CC-EEEEEEeeC-CCCCccCCHHHHHhhC
Confidence                  013579999999 86 999999998 88876  899998753

>1xiy_A Peroxiredoxin, pfaop; alpha-aneurysm, thioredoxin fold, peroxiredoxin fold, oxidoreductase; 1.80A {Plasmodium falciparum} SCOP: c.47.1.10

Probab=99.85  E-value=5.9e-21  Score=174.27  Aligned_cols=161  Identities=11%  Similarity=0.059  Sum_probs=124.0

Q ss_pred             CCCCCCCcccccCccccccchhhhcccccccccCC----CceechhhccCCCEEEEeecCCCCcchH-HHHHHHHhccch
Q 015842          184 VNEKVAPYSAIENISIQKLTPEYKIGMERLVKTKT----PPMKALELWRESPAVLLCIRRPGCIMCR-AEAHQLYAKKPI  258 (399)
Q Consensus       184 ~~~~~apl~~L~~i~l~~l~~~~~~g~~~~v~~~G----~~VsLsdL~~~~pvVLvFyRg~gCP~Cr-~el~~L~e~~pe  258 (399)
                      ++|+++|.|.|++..- +       ..+.+-..+|    ++|+++++++++++||+||++.|||+|. .|+.++++.+++
T Consensus         2 ~vGd~aPdf~l~~~~~-~-------~~~~~~~~~G~~~~~~v~l~d~~~gk~vVL~fyP~~fTp~Ct~~e~~~f~~~~~~   73 (182)
T 1xiy_A            2 KENDLIPNVKVMIDVR-N-------MNNISDTDGSPNDFTSIDTHELFNNKKILLISLPGAFTPTCSTKMIPGYEEEYDY   73 (182)
T ss_dssp             CTTCBCCCCEEEEEHH-H-------HTC--------CCEEEEEHHHHSTTCEEEEEECSCTTCHHHHHTHHHHHHHTHHH
T ss_pred             CCCCCCCCeEEEcccc-c-------ccccccccCCCccceeEeHHHHhCCCcEEEEEeCCCCCCCCCHHHHHHHHHHHHH
Confidence            6799999888876300 0       0000001136    7999999889999999999999999999 999999999999


Q ss_pred             h-hhcCCe-EEEEecCChhhHHhhhcC-CCC-CceeEeccchHHHHHhCCCcccccccccccccCHHHHHHHHHHHhcCC
Q 015842          259 F-DALGIQ-LFAVLHEYIESEVKDFWP-RYW-GGVVVYDQGMEFFKALGGGKLLKDKFLSGFLLNPRAIANYKRARTLGV  334 (399)
Q Consensus       259 f-~alGV~-LVaIspE~~e~~ik~F~~-~~l-~f~VLsDp~r~lYkaLGl~r~~r~s~lsgfl~~P~v~~~~~rA~~~G~  334 (399)
                      | +++|+. +++||.+++.. ++.|.+ ..+ +|++++|+++++.++||+..    .      . +.          .|+
T Consensus        74 f~~~~g~~~V~gvS~D~~~~-~~~~~~~~~~~~f~lLsD~~~~~a~~yGv~~----~------~-~~----------~G~  131 (182)
T 1xiy_A           74 FIKENNFDDIYCITNNDIYV-LKSWFKSMDIKKIKYISDGNSSFTDSMNMLV----D------K-SN----------FFM  131 (182)
T ss_dssp             HHTTSCCSEEEEEESSCHHH-HHHHHHHTTCCSSEEEECTTSHHHHHTTCEE----E------C-GG----------GTC
T ss_pred             HHHhCCCcEEEEEeCCCHHH-HHHHHHHcCCCCceEEEeCchHHHHHhCCce----e------c-cc----------cCC
Confidence            9 999996 99999999875 788885 567 69999999999999999941    0      0 00          111


Q ss_pred             ccccCCCCcccceEEEEecCCCcEEEEEecCCCCC--------CCCHHHHHHHHHh
Q 015842          335 EQNFKGEGEIKGGLFIVGRGRSGIAYQFIERNFGD--------WAPLAEVIEICTQ  382 (399)
Q Consensus       335 ~gn~~GD~~qLGGtFVId~gGg~I~yah~d~d~gD--------rad~eeVLaAl~~  382 (399)
                           | .....++|||| +| +|+|.+++.++++        +.++++||++|++
T Consensus       132 -----g-~~~~R~tfvId-dG-~V~~~~v~~~~~~~~~~~~~~~~~~~~vL~~L~~  179 (182)
T 1xiy_A          132 -----G-MRPWRFVAIVE-NN-ILVKMFQEKDKQHNIQTDPYDISTVNNVKEFLKN  179 (182)
T ss_dssp             -----C-EEECCEEEEEE-TT-EEEEEEECSSCCTTCSSCCCSTTSHHHHHHHHHC
T ss_pred             -----C-CceEEEEEEEc-CC-EEEEEEEeCCcccccccCcccCCCHHHHHHHHHh
Confidence                 1 12356899999 85 9999999998765        7899999999875

>3gkn_A Bacterioferritin comigratory protein; BCP, PRX, atypical 2-Cys, oxidoreduc; HET: BIH; 1.47A {Xanthomonas campestris PV} PDB: 3gkk_A 3gkm_A

Probab=99.84  E-value=1.5e-20  Score=162.35  Aligned_cols=152  Identities=14%  Similarity=0.085  Sum_probs=124.9

Q ss_pred             CCCCCCCCCccc--ccCccccccchhhhcccccccccCCCceechhhccCCCEEEEeecCCCCcchHHHHHHHHhccchh
Q 015842          182 PPVNEKVAPYSA--IENISIQKLTPEYKIGMERLVKTKTPPMKALELWRESPAVLLCIRRPGCIMCRAEAHQLYAKKPIF  259 (399)
Q Consensus       182 a~~~~~~apl~~--L~~i~l~~l~~~~~~g~~~~v~~~G~~VsLsdL~~~~pvVLvFyRg~gCP~Cr~el~~L~e~~pef  259 (399)
                      .+++|+.+|.|.  |++.                   +|++++++++ +++++||.|+++.|||.|+.++..|+++++++
T Consensus         6 ~l~~G~~~P~f~~~l~~~-------------------~G~~~~l~~~-~gk~~vl~F~~~~~c~~C~~~~~~l~~~~~~~   65 (163)
T 3gkn_A            6 DAVLELPAATFDLPLSLS-------------------GGTQTTLRAH-AGHWLVIYFYPKDSTPGATTEGLDFNALLPEF   65 (163)
T ss_dssp             CCCCCCCGGGGGCCEECS-------------------TTCEECSGGG-TTSCEEEEECSCTTSHHHHHHHHHHHHHHHHH
T ss_pred             ccccCCcCCCccccccCC-------------------CCCEEEHHHh-CCCcEEEEEeCCCCCCcHHHHHHHHHHHHHHH
Confidence            367899999777  7665                   5999999997 55699999999999999999999999999999


Q ss_pred             hhcCCeEEEEecCChhhHHhhhcC-CCCCceeEeccchHHHHHhCCCcccccccccccccCHHHHHHHHHHHhcCCcccc
Q 015842          260 DALGIQLFAVLHEYIESEVKDFWP-RYWGGVVVYDQGMEFFKALGGGKLLKDKFLSGFLLNPRAIANYKRARTLGVEQNF  338 (399)
Q Consensus       260 ~alGV~LVaIspE~~e~~ik~F~~-~~l~f~VLsDp~r~lYkaLGl~r~~r~s~lsgfl~~P~v~~~~~rA~~~G~~gn~  338 (399)
                      ++.|+++|+|+.++++. ++.|.+ ..++|++++|++..++++||+...          .              +.    
T Consensus        66 ~~~~~~vv~vs~d~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~----------~--------------~~----  116 (163)
T 3gkn_A           66 DKAGAKILGVSRDSVKS-HDNFCAKQGFAFPLVSDGDEALCRAFDVIKE----------K--------------NM----  116 (163)
T ss_dssp             HHTTCEEEEEESSCHHH-HHHHHHHHCCSSCEEECTTCHHHHHTTCEEE----------E--------------EE----
T ss_pred             HHCCCEEEEEeCCCHHH-HHHHHHHhCCCceEEECCcHHHHHHhCCccc----------c--------------cc----
Confidence            99999999999998765 778875 678999999999999999998520          0              00    


Q ss_pred             CCCC--cccceEEEEecCCCcEEEEEecCCCCCCCCHHHHHHHHHhhhh
Q 015842          339 KGEG--EIKGGLFIVGRGRSGIAYQFIERNFGDWAPLAEVIEICTQLQD  385 (399)
Q Consensus       339 ~GD~--~qLGGtFVId~gGg~I~yah~d~d~gDrad~eeVLaAl~~l~~  385 (399)
                      .|..  -..|.+||||++| +|++.|.  +......+++|+++++++.+
T Consensus       117 ~~~~~~~~~p~~~lid~~G-~i~~~~~--~~~~~~~~~~il~~l~~l~~  162 (163)
T 3gkn_A          117 YGKQVLGIERSTFLLSPEG-QVVQAWR--KVKVAGHADAVLAALKAHAK  162 (163)
T ss_dssp             TTEEEEEECCEEEEECTTS-CEEEEEC--SCCSTTHHHHHHHHHHHHCC
T ss_pred             ccccccCcceEEEEECCCC-eEEEEEc--CCCcccCHHHHHHHHHHHhc
Confidence            0111  1279999999996 8999993  34555678999999998764

>3ixr_A Bacterioferritin comigratory protein; alpha beta protein, oxidoreductase; 1.60A {Xylella fastidiosa}

Probab=99.84  E-value=5.7e-21  Score=170.16  Aligned_cols=152  Identities=13%  Similarity=0.064  Sum_probs=124.3

Q ss_pred             CCCCCCC----CCcccccCccccccchhhhcccccccccCCCceechhhccCCCEEEEeecCCCCcchHHHHHHHHhccc
Q 015842          182 PPVNEKV----APYSAIENISIQKLTPEYKIGMERLVKTKTPPMKALELWRESPAVLLCIRRPGCIMCRAEAHQLYAKKP  257 (399)
Q Consensus       182 a~~~~~~----apl~~L~~i~l~~l~~~~~~g~~~~v~~~G~~VsLsdL~~~~pvVLvFyRg~gCP~Cr~el~~L~e~~p  257 (399)
                      ++++|+.    +|.|.|++.                   +|++|+++++ +++++||+|++..|||.|+.++..|+++++
T Consensus        20 ~l~~Gd~ig~~aP~f~l~~~-------------------~G~~v~l~d~-~Gk~vvl~f~~~~~c~~C~~el~~l~~l~~   79 (179)
T 3ixr_A           20 HMNIGDTLNHSLLNHPLMLS-------------------GSTCKTLSDY-TNQWLVLYFYPKDNTPGSSTEGLEFNLLLP   79 (179)
T ss_dssp             SSCTTCBCCHHHHHCCEEEG-------------------GGEEECGGGG-TTSEEEEEECSCTTSHHHHHHHHHHHHHHH
T ss_pred             ccCcCcccCCcCCCeeEECC-------------------CCCEEeHHHH-CCCCEEEEEEcCCCCCchHHHHHHHHHHHH
Confidence            4566776    997777665                   4899999996 666899999999999999999999999999


Q ss_pred             hhhhcCCeEEEEecCChhhHHhhhcC-CCCCceeEeccchHHHHHhCCCcccccccccccccCHHHHHHHHHHHhcCCcc
Q 015842          258 IFDALGIQLFAVLHEYIESEVKDFWP-RYWGGVVVYDQGMEFFKALGGGKLLKDKFLSGFLLNPRAIANYKRARTLGVEQ  336 (399)
Q Consensus       258 ef~alGV~LVaIspE~~e~~ik~F~~-~~l~f~VLsDp~r~lYkaLGl~r~~r~s~lsgfl~~P~v~~~~~rA~~~G~~g  336 (399)
                      ++++.|+++|+|+.++++. ++.|.+ ..++|++++|++..++++||+...            +.           .   
T Consensus        80 ~~~~~~~~vv~Vs~D~~~~-~~~~~~~~~~~f~~l~D~~~~~~~~~gv~~~------------~~-----------~---  132 (179)
T 3ixr_A           80 QFEQINATVLGVSRDSVKS-HDSFCAKQGFTFPLVSDSDAILCKAFDVIKE------------KT-----------M---  132 (179)
T ss_dssp             HHHTTTEEEEEEESCCHHH-HHHHHHHHTCCSCEEECTTCHHHHHTTCEEE------------EC-----------C---
T ss_pred             HHHHCCCEEEEEcCCCHHH-HHHHHHHcCCceEEEECCchHHHHHcCCccc------------cc-----------c---
Confidence            9999999999999998865 778875 678999999999999999998520            00           0   


Q ss_pred             ccCCCC--cccceEEEEecCCCcEEEEEecCCCCCCCCHHHHHHHHHhhhh
Q 015842          337 NFKGEG--EIKGGLFIVGRGRSGIAYQFIERNFGDWAPLAEVIEICTQLQD  385 (399)
Q Consensus       337 n~~GD~--~qLGGtFVId~gGg~I~yah~d~d~gDrad~eeVLaAl~~l~~  385 (399)
                        .|..  ...|++||||++| +|++.|.  +.....++++|+++++++++
T Consensus       133 --~g~~~~~~~p~~~lID~~G-~I~~~~~--~~~~~~~~~~il~~l~~l~~  178 (179)
T 3ixr_A          133 --YGRQVIGIERSTFLIGPTH-RIVEAWR--QVKVPGHAEEVLNKLKAHAE  178 (179)
T ss_dssp             --C--CEEEECCEEEEECTTS-BEEEEEC--SCCSTTHHHHHHHHHHHHHC
T ss_pred             --cCcccCCcceEEEEECCCC-EEEEEEc--CCCCCCCHHHHHHHHHHHhc
Confidence              0111  1369999999996 8999993  45667788999999998864

>2yzh_A Probable thiol peroxidase; redox protein, antioxidant, oxidoreductase, STRU genomics, NPPSFA; 1.85A {Aquifex aeolicus}

Probab=99.84  E-value=2.4e-20  Score=163.48  Aligned_cols=149  Identities=13%  Similarity=0.119  Sum_probs=124.9

Q ss_pred             CCCCCCCCCCcccccCccccccchhhhcccccccccCCCceechhhccCCCEEEEeecCCCCcchHHHHHHHHhccchhh
Q 015842          181 APPVNEKVAPYSAIENISIQKLTPEYKIGMERLVKTKTPPMKALELWRESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFD  260 (399)
Q Consensus       181 ~a~~~~~~apl~~L~~i~l~~l~~~~~~g~~~~v~~~G~~VsLsdL~~~~pvVLvFyRg~gCP~Cr~el~~L~e~~pef~  260 (399)
                      ..+.+|+.+|.|.|++.                   +|++++++++ +++++||.|++..|||.|+.++..|+++++++ 
T Consensus        19 ~~l~~g~~~P~f~l~~~-------------------~G~~~~l~~~-~gk~vvl~f~~~~~C~~C~~~~~~l~~~~~~~-   77 (171)
T 2yzh_A           19 PELKVGDRAPEAVVVTK-------------------DLQEKIVGGA-KDVVQVIITVPSLDTPVCETETKKFNEIMAGM-   77 (171)
T ss_dssp             CCCCTTSBCCCEEEEET-------------------TSCEEEESSC-CSSEEEEEECSCTTSHHHHHHHHHHHHHTTTC-
T ss_pred             CcCCCCCcCCceEEECC-------------------CCCEeeHHHh-CCCeEEEEEECCCCCCchHHHHHHHHHHHHHc-
Confidence            45688999997777654                   4999999996 67789999999999999999999999999999 


Q ss_pred             hcCCeEEEEecCChhhHHhhhcC-CCC-CceeEec-cchHHHHHhCCCcccccccccccccCHHHHHHHHHHHhcCCccc
Q 015842          261 ALGIQLFAVLHEYIESEVKDFWP-RYW-GGVVVYD-QGMEFFKALGGGKLLKDKFLSGFLLNPRAIANYKRARTLGVEQN  337 (399)
Q Consensus       261 alGV~LVaIspE~~e~~ik~F~~-~~l-~f~VLsD-p~r~lYkaLGl~r~~r~s~lsgfl~~P~v~~~~~rA~~~G~~gn  337 (399)
                       .|+++|+|+.++++. +++|.+ ..+ +|++++| ++..+ ++||+..           . +.           .    
T Consensus        78 -~~v~vv~Is~d~~~~-~~~~~~~~~~~~~~~l~D~~~~~~-~~~gv~~-----------~-~~-----------~----  127 (171)
T 2yzh_A           78 -EGVDVTVVSMDLPFA-QKRFCESFNIQNVTVASDFRYRDM-EKYGVLI-----------G-EG-----------A----  127 (171)
T ss_dssp             -TTEEEEEEESSCHHH-HHHHHHHTTCCSSEEEECTTTCGG-GGGTCBB-----------C-SS-----------T----
T ss_pred             -CCceEEEEeCCCHHH-HHHHHHHcCCCCeEEeecCccCcH-HHhCCEe-----------c-cc-----------c----
Confidence             799999999988765 778875 677 8999999 89999 9999852           0 00           0    


Q ss_pred             cCCCCcccceEEEEecCCCcEEEEEecCCCCCCCCHHHHHHHHHhh
Q 015842          338 FKGEGEIKGGLFIVGRGRSGIAYQFIERNFGDWAPLAEVIEICTQL  383 (399)
Q Consensus       338 ~~GD~~qLGGtFVId~gGg~I~yah~d~d~gDrad~eeVLaAl~~l  383 (399)
                        ..++..|.+||||++| +|+|.|...+..+++++++|+++++++
T Consensus       128 --~~g~~~p~~~liD~~G-~i~~~~~~~~~~~~~~~~~ll~~l~~l  170 (171)
T 2yzh_A          128 --LKGILARAVFIIDKEG-KVAYVQLVPEITEEPNYDEVVNKVKEL  170 (171)
T ss_dssp             --TTTSBCCEEEEECTTS-BEEEEEECSBTTSCCCCHHHHHHHHHC
T ss_pred             --cCCceeeEEEEEcCCC-eEEEEEeCCCcCCCCCHHHHHHHHHhh
Confidence              0123479999999996 999999999899999999999999875

>2xhf_A Peroxiredoxin 5; oxidoreductase, antioxidant enzymes; 1.30A {Alvinella pompejana}

Probab=99.83  E-value=3.7e-21  Score=174.42  Aligned_cols=153  Identities=9%  Similarity=-0.000  Sum_probs=121.5

Q ss_pred             CCCCCCCCCCcccccCccccccchhhhcccccccccCCCceechhhccCCCEEEEeecCCCCcchHHHHHHHHhccchhh
Q 015842          181 APPVNEKVAPYSAIENISIQKLTPEYKIGMERLVKTKTPPMKALELWRESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFD  260 (399)
Q Consensus       181 ~a~~~~~~apl~~L~~i~l~~l~~~~~~g~~~~v~~~G~~VsLsdL~~~~pvVLvFyRg~gCP~Cr~el~~L~e~~pef~  260 (399)
                      .+.++|+++|.|.|++-                  ..|++|+|+++++++++||+||++.|||.|+.|+.++++.+++|+
T Consensus        12 ~~~~vGd~aPdf~l~~~------------------g~~~~v~L~d~~~gk~vVL~fyP~~fTp~Ct~e~~~f~~~~~ef~   73 (171)
T 2xhf_A           12 SPIKVGDIIPDVLVYED------------------VPSKSFPIHDVFRGRKGILFSVVGAFVPGSNNHIPEYLSLYDKFK   73 (171)
T ss_dssp             CCCCTTCBCCCCEEECS------------------STTCEEETHHHHTTSEEEEEECSCTTCTTTTSSHHHHHHTHHHHH
T ss_pred             CcccCcCCCCCeEEecC------------------CCCcEEEhHHHhCCCeEEEEEECCCCCCcCHHHHHHHHHHHHHHH
Confidence            46689999997777521                  013899999998999999999999999999999999999999999


Q ss_pred             hcCCe-EEEEecCChhhHHhhhcC-CCC--CceeEeccchHHHHHhCCCcccccccccccccCHHHHHHHHHHHhcCCcc
Q 015842          261 ALGIQ-LFAVLHEYIESEVKDFWP-RYW--GGVVVYDQGMEFFKALGGGKLLKDKFLSGFLLNPRAIANYKRARTLGVEQ  336 (399)
Q Consensus       261 alGV~-LVaIspE~~e~~ik~F~~-~~l--~f~VLsDp~r~lYkaLGl~r~~r~s~lsgfl~~P~v~~~~~rA~~~G~~g  336 (399)
                      ++|+. |++||++++.. .+.|.+ ..+  +|++++|+++++.++||+..            ....   +      |.  
T Consensus        74 ~~gv~~VigIS~D~~~~-~~~w~~~~~~~~~f~lLSD~~~~~a~ayGv~~------------~~~~---~------g~--  129 (171)
T 2xhf_A           74 EEGYHTIACIAVNDPFV-MAAWGKTVDPEHKIRMLADMHGEFTRALGTEL------------DSSK---M------LG--  129 (171)
T ss_dssp             HTTCCEEEEEESSCHHH-HHHHHHHHCTTCCSEEEECTTSHHHHHHTCBC------------CCHH---H------HS--
T ss_pred             HCCCCEEEEEeCCCHHH-HHHHHHhcCCCCCeEEEEeCCchHHHHhCCce------------eccc---c------CC--
Confidence            99997 99999999975 788885 556  89999999999999999951            0100   0      10  


Q ss_pred             ccCCCCcccceEEEEecCCCcEEEEEecCCCC--CCCCHHHHHHHHH
Q 015842          337 NFKGEGEIKGGLFIVGRGRSGIAYQFIERNFG--DWAPLAEVIEICT  381 (399)
Q Consensus       337 n~~GD~~qLGGtFVId~gGg~I~yah~d~d~g--Drad~eeVLaAl~  381 (399)
                         | .....++|||| +| +|+|.+++++++  .+.++++||++++
T Consensus       130 ---g-~~~~R~tfvId-dG-~V~~~~v~~~~~~~~~s~a~~vL~~~~  170 (171)
T 2xhf_A          130 ---N-NRSRRYAMLID-DN-KIRSVSTEPDITGLACLLSIQRQKENK  170 (171)
T ss_dssp             ---S-CCBCCEEEEEE-TT-EEEEEEETTSCSHHHHHHHHHHC----
T ss_pred             ---C-cceEEEEEEEe-CC-EEEEEEEeCCCCcccCCCHHHHHHHhc
Confidence               1 12356899999 85 999999999887  5667899988775

>1q98_A Thiol peroxidase, TPX; structural genomics, NYSGXRC, PSI, protein structure initiative; 1.90A {Haemophilus influenzae} SCOP: c.47.1.10

Probab=99.83  E-value=2.8e-20  Score=162.77  Aligned_cols=147  Identities=6%  Similarity=0.044  Sum_probs=123.1

Q ss_pred             CCCCCCCCCcccccCccccccchhhhcccccccccCCCceechhhccCCCEEEEeecCCCCcchHHHHHHHHhccchhhh
Q 015842          182 PPVNEKVAPYSAIENISIQKLTPEYKIGMERLVKTKTPPMKALELWRESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDA  261 (399)
Q Consensus       182 a~~~~~~apl~~L~~i~l~~l~~~~~~g~~~~v~~~G~~VsLsdL~~~~pvVLvFyRg~gCP~Cr~el~~L~e~~pef~a  261 (399)
                      .+++|+.+|.|.|++.                   +|++++++++ +++++||.|++..|||.|+.++..|+++++++  
T Consensus        16 ~~~~G~~~P~f~l~~~-------------------~G~~v~l~~~-~gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~--   73 (165)
T 1q98_A           16 FPQVGEIVENFILVGN-------------------DLADVALNDF-ASKRKVLNIFPSIDTGVCATSVRKFNQQAAKL--   73 (165)
T ss_dssp             CCCTTCBCCCCEEECT-------------------TSCEEEGGGG-TTSEEEEEECSCSCSSCCCHHHHHHHHHHHHS--
T ss_pred             cCCCCCCCCCeEEECC-------------------CCCEEehHHh-CCCeEEEEEECCCCCCccHHHHHHHHHHHHHc--
Confidence            5678999997777665                   4999999996 67789999999999999999999999999888  


Q ss_pred             cCCeEEEEecCChhhHHhhhcC-CCC-CceeEecc-chHHHHHhCCCcccccccccccccCHHHHHHHHHHHhcCCcccc
Q 015842          262 LGIQLFAVLHEYIESEVKDFWP-RYW-GGVVVYDQ-GMEFFKALGGGKLLKDKFLSGFLLNPRAIANYKRARTLGVEQNF  338 (399)
Q Consensus       262 lGV~LVaIspE~~e~~ik~F~~-~~l-~f~VLsDp-~r~lYkaLGl~r~~r~s~lsgfl~~P~v~~~~~rA~~~G~~gn~  338 (399)
                      .|+++|+|+.++++. ++.|.+ ..+ +|++++|+ +..++++||+..           . +               ...
T Consensus        74 ~~v~vv~Is~d~~~~-~~~~~~~~~~~~~~~l~D~~~~~~~~~~gv~~-----------~-~---------------~~~  125 (165)
T 1q98_A           74 SNTIVLCISADLPFA-QARFCGAEGIENAKTVSTFRNHALHSQLGVDI-----------Q-T---------------GPL  125 (165)
T ss_dssp             TTEEEEEEESSCHHH-HTTCTTTTTCTTEEEEECTTCTHHHHHTTCEE-----------C-S---------------STT
T ss_pred             CCCEEEEEeCCCHHH-HHHHHHHcCCCceEEeeccccchHHHHhCcee-----------c-c---------------ccc
Confidence            799999999988765 788885 678 79999998 899999999851           0 0               000


Q ss_pred             CCCCcccceEEEEecCCCcEEEEEecCCCCCCCCHHHHHHHHH
Q 015842          339 KGEGEIKGGLFIVGRGRSGIAYQFIERNFGDWAPLAEVIEICT  381 (399)
Q Consensus       339 ~GD~~qLGGtFVId~gGg~I~yah~d~d~gDrad~eeVLaAl~  381 (399)
                      .|  ...|.+||||++| +|++.|...+..++++++++|++++
T Consensus       126 ~g--~~~p~~~liD~~G-~i~~~~~~~~~~~~~~~~~~l~~l~  165 (165)
T 1q98_A          126 AG--LTSRAVIVLDEQN-NVLHSQLVEEIKEEPNYEAALAVLA  165 (165)
T ss_dssp             TT--SBCCEEEEECTTS-BEEEEEECSBTTSCCCHHHHHHTTC
T ss_pred             CC--ccceeEEEEcCCC-EEEEEEeCCCCCCCCCHHHHHHhhC
Confidence            11  3569999999996 9999999988999999999998763

>2wfc_A Peroxiredoxin 5, PRDX5; oxidoreductase, antioxidant enzymes; 1.75A {Arenicola marina}

Probab=99.83  E-value=3.1e-20  Score=165.20  Aligned_cols=152  Identities=11%  Similarity=0.018  Sum_probs=122.5

Q ss_pred             CCCCCCCCCccccc-CccccccchhhhcccccccccCCCceechhhccCCCEEEEeecCCCCcchHH-HHHHHHhccchh
Q 015842          182 PPVNEKVAPYSAIE-NISIQKLTPEYKIGMERLVKTKTPPMKALELWRESPAVLLCIRRPGCIMCRA-EAHQLYAKKPIF  259 (399)
Q Consensus       182 a~~~~~~apl~~L~-~i~l~~l~~~~~~g~~~~v~~~G~~VsLsdL~~~~pvVLvFyRg~gCP~Cr~-el~~L~e~~pef  259 (399)
                      ++++|+.+|.|.|+ +.                   +|++++|+++++++++||+||+..|||.|+. |+..|++.+++|
T Consensus         2 ~l~~G~~aP~f~l~~~~-------------------~G~~v~L~d~~~Gk~vvl~f~~a~wcp~C~~~e~p~l~~~~~~~   62 (167)
T 2wfc_A            2 PIKEGDKLPAVTVFGAT-------------------PNDKVNMAELFAGKKGVLFAVPGAFTPGSSKTHLPGYVEQAAAI   62 (167)
T ss_dssp             CCCTTCBCCCCEEESSS-------------------TTCEEEHHHHTTTSEEEEEEESCTTCHHHHHTHHHHHHHTHHHH
T ss_pred             CCCCCCcCCCcEeecCC-------------------CCcEEeHHHHhCCCcEEEEEeCCCCCCCCCHHHHHHHHHHHHHH
Confidence            35789999988776 44                   4999999998788899999999999999999 999999999999


Q ss_pred             hhcCC-eEEEEecCChhhHHhhhcC-CCCC--ceeEeccchHHHHHhCCCcccccccccccccCHHHHHHHHHHHhcCCc
Q 015842          260 DALGI-QLFAVLHEYIESEVKDFWP-RYWG--GVVVYDQGMEFFKALGGGKLLKDKFLSGFLLNPRAIANYKRARTLGVE  335 (399)
Q Consensus       260 ~alGV-~LVaIspE~~e~~ik~F~~-~~l~--f~VLsDp~r~lYkaLGl~r~~r~s~lsgfl~~P~v~~~~~rA~~~G~~  335 (399)
                      ++.|+ ++|+|+.++++. ++.|.+ ..++  |++++|++.+++++||+..           ..+.    .     .   
T Consensus        63 ~~~gv~~vv~Is~d~~~~-~~~~~~~~~~~~~fp~l~D~~~~~~~~~gv~~-----------~~~~----~-----~---  118 (167)
T 2wfc_A           63 HGKGVDIIACMAVNDSFV-MDAWGKAHGADDKVQMLADPGGAFTKAVDMEL-----------DLSA----V-----L---  118 (167)
T ss_dssp             HHTTCCEEEEEESSCHHH-HHHHHHHTTCTTTSEEEECTTSHHHHHTTCEE-----------CCHH----H-----H---
T ss_pred             HHCCCCEEEEEeCCCHHH-HHHHHHhcCCCcceEEEECCCCcHHHHcCCcc-----------cccc----c-----c---
Confidence            99999 999999998764 778875 6788  9999999999999999852           1111    0     0   


Q ss_pred             cccCCCCcccceEEEEecCCCcEEEEEecCCCC--CCCCHHHHHHHHHh
Q 015842          336 QNFKGEGEIKGGLFIVGRGRSGIAYQFIERNFG--DWAPLAEVIEICTQ  382 (399)
Q Consensus       336 gn~~GD~~qLGGtFVId~gGg~I~yah~d~d~g--Drad~eeVLaAl~~  382 (399)
                          |.....|.+||| ++| +|+|.+++.+..  +-...+.+|+.+.-
T Consensus       119 ----g~~~~~p~t~lI-~~G-~I~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (167)
T 2wfc_A          119 ----GNVRSKRYSLVI-EDG-VVTKVNVEPDGKGLTCSLAPNILSQLGG  161 (167)
T ss_dssp             ----SSCEECCEEEEE-ETT-EEEEEEECTTSSSSSTTSHHHHHHHHC-
T ss_pred             ----CcccceEEEEEE-eCC-EEEEEEecCCCCcceeccHHHHHHHhcc
Confidence                112356999999 886 999999998764  34556666666543

>3zrd_A Thiol peroxidase; oxidoreductase, 2Cys peroxiredoxin, thioredoxin-fold, ROS PR; 1.74A {Yersinia pseudotuberculosis} PDB: 2xpe_A 2xpd_A 3zre_A 2yjh_A 4af2_A 3hvs_A* 1qxh_A* 3i43_A* 3hvv_A 3hvx_A

Probab=99.82  E-value=8.8e-20  Score=166.42  Aligned_cols=149  Identities=9%  Similarity=0.046  Sum_probs=126.5

Q ss_pred             CCCCCCCCCCCcccccCccccccchhhhcccccccccCCCceechhhccCCCEEEEeecCCCCcchHHHHHHHHhccchh
Q 015842          180 QAPPVNEKVAPYSAIENISIQKLTPEYKIGMERLVKTKTPPMKALELWRESPAVLLCIRRPGCIMCRAEAHQLYAKKPIF  259 (399)
Q Consensus       180 ~~a~~~~~~apl~~L~~i~l~~l~~~~~~g~~~~v~~~G~~VsLsdL~~~~pvVLvFyRg~gCP~Cr~el~~L~e~~pef  259 (399)
                      ...+++|+.+|.|.|++.                   +|++++|+++ +++++||.|++..|||.|+.++..|++++.++
T Consensus        49 ~~~l~~G~~aPdf~l~d~-------------------~G~~v~L~d~-~Gk~vvl~F~~~~~c~~C~~e~~~l~~l~~~~  108 (200)
T 3zrd_A           49 GKLPQIGDKAKDFTLVAK-------------------DLSDVALSSF-AGKRKVLNIFPSIDTGVCAASVRKFNQLAGEL  108 (200)
T ss_dssp             SCCCCTTCBCCCCEEECT-------------------TSCEEEGGGG-TTSEEEEEECSCCCCSCCCHHHHHHHHHHHTS
T ss_pred             cccCCCCCCCCCeEEECC-------------------CCCEEcHHHh-CCCcEEEEEECCCCCchhHHHHHHHHHHHHHh
Confidence            446789999997777665                   5999999996 67789999999999999999999999999999


Q ss_pred             hhcCCeEEEEecCChhhHHhhhcC-CCC-CceeEecc-chHHHHHhCCCcccccccccccccCHHHHHHHHHHHhcCCcc
Q 015842          260 DALGIQLFAVLHEYIESEVKDFWP-RYW-GGVVVYDQ-GMEFFKALGGGKLLKDKFLSGFLLNPRAIANYKRARTLGVEQ  336 (399)
Q Consensus       260 ~alGV~LVaIspE~~e~~ik~F~~-~~l-~f~VLsDp-~r~lYkaLGl~r~~r~s~lsgfl~~P~v~~~~~rA~~~G~~g  336 (399)
                        .|+++|+|+.++++. ++.|.+ ..+ +|++++|+ +..++++||+...            ..           +   
T Consensus       109 --~~v~vv~Is~D~~~~-~~~~~~~~~~~~f~~l~D~~~~~~~~~ygv~~~------------~~-----------~---  159 (200)
T 3zrd_A          109 --ENTVVLCISSDLPFA-QSRFCGAEGLSNVITLSTLRGADFKQAYGVAIT------------EG-----------P---  159 (200)
T ss_dssp             --TTEEEEEEESSCHHH-HTTCTTTTTCTTEEEEETTSCTHHHHHTTCEEC------------SS-----------T---
T ss_pred             --CCCEEEEEECCCHHH-HHHHHHHcCCCCceEEecCchHHHHHHhCceee------------cc-----------c---
Confidence              699999999998875 788885 678 99999999 9999999998520            00           0   


Q ss_pred             ccCCCCcccceEEEEecCCCcEEEEEecCCCCCCCCHHHHHHHHH
Q 015842          337 NFKGEGEIKGGLFIVGRGRSGIAYQFIERNFGDWAPLAEVIEICT  381 (399)
Q Consensus       337 n~~GD~~qLGGtFVId~gGg~I~yah~d~d~gDrad~eeVLaAl~  381 (399)
                       .  .+...|++||||++| +|+|.++..+..+.++++++|++++
T Consensus       160 -~--~g~~~p~~~lID~~G-~I~~~~~~~~~~~~~~~~~~l~~Lk  200 (200)
T 3zrd_A          160 -L--AGLTARAVVVLDGQD-NVIYSELVNEITTEPNYDAALAALK  200 (200)
T ss_dssp             -T--TTSBCCEEEEECTTS-BEEEEEECSBTTSCCCHHHHHHHHC
T ss_pred             -C--CCccccEEEEECCCC-eEEEEEecCCcccCCCHHHHHHhhC
Confidence             0  112469999999996 9999999999999999999999874

>4eo3_A Bacterioferritin comigratory protein/NADH dehydro; thioredoxin-fold, alpha-beta-aplha sandwich fold, antioxidan oxidoreductase, FMN binding; HET: FMN; 1.65A {Thermotoga maritima}

Probab=99.82  E-value=3.8e-20  Score=181.94  Aligned_cols=137  Identities=13%  Similarity=0.137  Sum_probs=117.5

Q ss_pred             CCCceechhhccCCCEEEEeecCCCCcchHHHHHHHHhccchhhhcCCeEEEEecCChhhHHhhhcC-CCCCceeEeccc
Q 015842          217 KTPPMKALELWRESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLHEYIESEVKDFWP-RYWGGVVVYDQG  295 (399)
Q Consensus       217 ~G~~VsLsdL~~~~pvVLvFyRg~gCP~Cr~el~~L~e~~pef~alGV~LVaIspE~~e~~ik~F~~-~~l~f~VLsDp~  295 (399)
                      +|++|+|+++ +++++||.||+..|||.|+.|+.+|++..    ..|+++|+||.++++. ++.|.+ +.++|++++|++
T Consensus        13 ~G~~~~Lsd~-~Gk~vvl~F~p~~~tp~C~~e~~~~~~~~----~~~~~v~gis~D~~~~-~~~f~~~~~l~fp~l~D~~   86 (322)
T 4eo3_A           13 EGKTFTHVDL-YGKYTILFFFPKAGTSGSTREAVEFSREN----FEKAQVVGISRDSVEA-LKRFKEKNDLKVTLLSDPE   86 (322)
T ss_dssp             TSCEEEGGGT-TTSEEEEEECSSTTSHHHHHHHHHHHHSC----CTTEEEEEEESCCHHH-HHHHHHHHTCCSEEEECTT
T ss_pred             CcCEEeHHHh-CCCeEEEEEECCCCCCCCHHHHHHHHHHh----hCCCEEEEEeCCCHHH-HHHHHHhhCCceEEEEcCc
Confidence            5999999996 67799999999999999999999997632    2489999999998875 788885 789999999999


Q ss_pred             hHHHHHhCCCcccccccccccccCHHHHHHHHHHHhcCCccccCCCCcccceEEEEecCCCcEEEEEecCCCCCCCCHHH
Q 015842          296 MEFFKALGGGKLLKDKFLSGFLLNPRAIANYKRARTLGVEQNFKGEGEIKGGLFIVGRGRSGIAYQFIERNFGDWAPLAE  375 (399)
Q Consensus       296 r~lYkaLGl~r~~r~s~lsgfl~~P~v~~~~~rA~~~G~~gn~~GD~~qLGGtFVId~gGg~I~yah~d~d~gDrad~ee  375 (399)
                      .++.++||+..                                  .+...|+|||||++| +|++.|+.....+|+  ++
T Consensus        87 ~~v~~~ygv~~----------------------------------~~~~~r~tfiId~~G-~i~~~~~~v~~~~h~--~~  129 (322)
T 4eo3_A           87 GILHEFFNVLE----------------------------------NGKTVRSTFLIDRWG-FVRKEWRRVKVEGHV--QE  129 (322)
T ss_dssp             CHHHHHTTCEE----------------------------------TTEECCEEEEECTTS-BEEEEEESCCSTTHH--HH
T ss_pred             hHHHHhcCCCC----------------------------------CCcCccEEEEECCCC-EEEEEEeCCCccccH--HH
Confidence            99999999831                                  112358999999996 999999999999987  99


Q ss_pred             HHHHHHhhhhhhccccccccc
Q 015842          376 VIEICTQLQDQQRDQSETIKT  396 (399)
Q Consensus       376 VLaAl~~l~~~~~~~~~~~~~  396 (399)
                      ||+++++++.+...-.|.|++
T Consensus       130 ~l~~~~~~~~~~~~~~~~I~~  150 (322)
T 4eo3_A          130 VKEALDRLIEEDLSLNKHIEW  150 (322)
T ss_dssp             HHHHHHHHHHHHTSCCHHHHH
T ss_pred             HHHHHhhhchhhhHHHHHHHh
Confidence            999999998777777777764

>1n8j_A AHPC, alkyl hydroperoxide reductase C22 protein; peroxiredoxin, decamer, antioxidant, peroxidase, AHPF, oxidoreductase; 2.17A {Salmonella typhimurium} SCOP: c.47.1.10 PDB: 1yep_A 1yf1_A 1yf0_A 1yex_A 3emp_A

Probab=99.82  E-value=1.3e-19  Score=162.58  Aligned_cols=149  Identities=9%  Similarity=0.002  Sum_probs=122.2

Q ss_pred             CCCCCCCcccccCccccccchhhhcccccccccCC--CceechhhccCCCEEEEeecCCCCcchHHHHHHHHhccchhhh
Q 015842          184 VNEKVAPYSAIENISIQKLTPEYKIGMERLVKTKT--PPMKALELWRESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDA  261 (399)
Q Consensus       184 ~~~~~apl~~L~~i~l~~l~~~~~~g~~~~v~~~G--~~VsLsdL~~~~pvVLvFyRg~gCP~Cr~el~~L~e~~pef~a  261 (399)
                      .+|+.+|.|.|++.     .             +|  ++|+++++ +++++||.|++..|||.|+.++..|+++++++++
T Consensus         2 ~~G~~aP~f~l~~~-----~-------------~G~~~~v~l~~~-~Gk~vvl~F~~~~~Cp~C~~e~~~l~~~~~~~~~   62 (186)
T 1n8j_A            2 LINTKIKPFKNQAF-----K-------------NGEFIEVTEKDT-EGRWSVFFFYPADFTFVSPTELGDVADHYEELQK   62 (186)
T ss_dssp             CTTCBCCCCEEEEE-----E-------------TTEEEEEEHHHH-TTSEEEEEECSCTTCSHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCcCCCcEeecc-----c-------------CCcceEEEHHHH-CCCeEEEEEECCCCCCccHHHHHHHHHHHHHHHH
Confidence            57888997766655     1             27  89999997 6678999999999999999999999999999999


Q ss_pred             cCCeEEEEecCChhhHHhhhcC-C----CCCceeEeccchHHHHHhCCCcccccccccccccCHHHHHHHHHHHhcCCcc
Q 015842          262 LGIQLFAVLHEYIESEVKDFWP-R----YWGGVVVYDQGMEFFKALGGGKLLKDKFLSGFLLNPRAIANYKRARTLGVEQ  336 (399)
Q Consensus       262 lGV~LVaIspE~~e~~ik~F~~-~----~l~f~VLsDp~r~lYkaLGl~r~~r~s~lsgfl~~P~v~~~~~rA~~~G~~g  336 (399)
                      .|+++|+|+.++++. ++.|.+ .    .++|++++|++..++++||+..           . .                
T Consensus        63 ~~v~vv~Is~d~~~~-~~~~~~~~~~~~~~~fp~l~D~~~~~~~~ygv~~-----------~-~----------------  113 (186)
T 1n8j_A           63 LGVDVYSVSTDTHFT-HKAWHSSSETIAKIKYAMIGDPTGALTRNFDNMR-----------E-D----------------  113 (186)
T ss_dssp             TTEEEEEEESSCHHH-HHHHHHHCTTGGGCCSEEEECTTSHHHHHTTCEE-----------T-T----------------
T ss_pred             CCCEEEEEECCCHHH-HHHHHHHcCcccCCceeEEECCchHHHHHhCCcc-----------C-C----------------
Confidence            999999999988764 777875 5    6899999999999999999841           0 0                


Q ss_pred             ccCCCCcccceEEEEecCCCcEEEEEecCCCCCCCCHHHHHHHHHhhhhh
Q 015842          337 NFKGEGEIKGGLFIVGRGRSGIAYQFIERNFGDWAPLAEVIEICTQLQDQ  386 (399)
Q Consensus       337 n~~GD~~qLGGtFVId~gGg~I~yah~d~d~gDrad~eeVLaAl~~l~~~  386 (399)
                          .++..|.+||||++| +|++.|......+ .+.++|+++++.++..
T Consensus       114 ----~g~~~p~~~lID~~G-~i~~~~~~~~~~~-~~~~~l~~~l~~l~~~  157 (186)
T 1n8j_A          114 ----EGLADRATFVVDPQG-IIQAIEVTAEGIG-RDASDLLRKIKAAQYV  157 (186)
T ss_dssp             ----TTEECEEEEEECTTS-BEEEEEEECTTBC-CCHHHHHHHHHHHHHH
T ss_pred             ----CCceeeEEEEECCCC-eEEEEEecCCCCC-CCHHHHHHHHHHHHHH
Confidence                013479999999996 8999998764322 3689999999988753

>2pwj_A Mitochondrial peroxiredoxin; alpha and beta protein, oxidoreductase; 2.80A {Pisum sativum}

Probab=99.82  E-value=1.4e-19  Score=161.06  Aligned_cols=152  Identities=11%  Similarity=0.017  Sum_probs=118.6

Q ss_pred             CCCCCCCcccccCccccccchhhhcccccccccCC-----CceechhhccCCCEEEEeecCCCCcchHHH-HHHHHhccc
Q 015842          184 VNEKVAPYSAIENISIQKLTPEYKIGMERLVKTKT-----PPMKALELWRESPAVLLCIRRPGCIMCRAE-AHQLYAKKP  257 (399)
Q Consensus       184 ~~~~~apl~~L~~i~l~~l~~~~~~g~~~~v~~~G-----~~VsLsdL~~~~pvVLvFyRg~gCP~Cr~e-l~~L~e~~p  257 (399)
                      ..|+.+|.|.|++...   .            .+|     ++++++++++++++||+||+..|||.|+.| +.+|++.++
T Consensus         8 ~~g~~aP~f~l~~~~~---~------------~~G~~~~~~~v~l~~~~~gk~vvl~~~~a~wcp~C~~eh~p~l~~~~~   72 (171)
T 2pwj_A            8 DILSAASNVSLQKART---W------------DEGVESKFSTTPVNDIFKDKKVVIFGLPGAYTGVCSSKHVPPYKHNID   72 (171)
T ss_dssp             --CCCSSSBCCCSCEE---C------------CCSSCTTCCCEEHHHHHTTSEEEEEECSCTTCTTHHHHTHHHHHHTHH
T ss_pred             cccCcCCCeEEecccc---c------------ccCCccCcceEEHHHHhCCCCEEEEEecCCCCCCCCHHHHHHHHHHHH
Confidence            4566899777766510   0            024     899999988888899999999999999999 999999999


Q ss_pred             hhhhcCCe-EEEEecCChhhHHhhhcC-CC--CCceeEeccchHHHHHhCCCcccccccccccccCHHHHHHHHHHHhcC
Q 015842          258 IFDALGIQ-LFAVLHEYIESEVKDFWP-RY--WGGVVVYDQGMEFFKALGGGKLLKDKFLSGFLLNPRAIANYKRARTLG  333 (399)
Q Consensus       258 ef~alGV~-LVaIspE~~e~~ik~F~~-~~--l~f~VLsDp~r~lYkaLGl~r~~r~s~lsgfl~~P~v~~~~~rA~~~G  333 (399)
                      +|++.|+. +|+|+.++++. ++.|.+ +.  ++|++++|++.++.++||+..    .      . +.          .|
T Consensus        73 ~~~~~g~~~vv~Is~d~~~~-~~~~~~~~~~~~~fp~l~D~~~~~~~~ygv~~----~------~-~~----------~~  130 (171)
T 2pwj_A           73 KFKAKGVDSVICVAINDPYT-VNAWAEKIQAKDAIEFYGDFDGSFHKSLELTT----D------L-SA----------GL  130 (171)
T ss_dssp             HHHHTTCSEEEEEESSCHHH-HHHHHHHTTCTTTSEEEECTTCHHHHHHTCEE----E------C-TT----------TT
T ss_pred             HHHHCCCCEEEEEeCCCHHH-HHHHHHHhCCCCceEEEECCccHHHHHhCCcc----c------c-cc----------cc
Confidence            99999999 99999988764 777875 55  489999999999999999851    0      0 00          01


Q ss_pred             CccccCCCCcccceEEEEecCCCcEEEEEecCCCCC--CCCHHHHHHHH
Q 015842          334 VEQNFKGEGEIKGGLFIVGRGRSGIAYQFIERNFGD--WAPLAEVIEIC  380 (399)
Q Consensus       334 ~~gn~~GD~~qLGGtFVId~gGg~I~yah~d~d~gD--rad~eeVLaAl  380 (399)
                      +     | ....+.+|+|+ +| +|+|.|++.++++  +.++++||++|
T Consensus       131 ~-----g-~~~~~~t~~I~-~G-~I~~~~~~~~~~~~~~~~~~~il~~l  171 (171)
T 2pwj_A          131 L-----G-IRSERWSAYVV-DG-KVKALNVEESPSDVKVSGAETILGQI  171 (171)
T ss_dssp             C-----C-EEECCEEEEEE-TT-EEEEEEECSSTTCCSSSSHHHHHHHC
T ss_pred             C-----C-cccceeEEEEE-CC-EEEEEEeecCCCCCcccCHHHHHhcC
Confidence            0     0 01346789999 86 9999999999874  67899999874

>3qpm_A Peroxiredoxin; oxidoreductase, thioredoxin fold, peroxidase; 1.90A {Larimichthys crocea}

Probab=99.81  E-value=2.3e-19  Score=168.78  Aligned_cols=154  Identities=14%  Similarity=0.057  Sum_probs=125.6

Q ss_pred             CCCCCCCCCCcccccCccccccchhhhcccccccccCCCceechhhccCCCEEEEeecCCCCcchHHHHHHHHhccchhh
Q 015842          181 APPVNEKVAPYSAIENISIQKLTPEYKIGMERLVKTKTPPMKALELWRESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFD  260 (399)
Q Consensus       181 ~a~~~~~~apl~~L~~i~l~~l~~~~~~g~~~~v~~~G~~VsLsdL~~~~pvVLvFyRg~gCP~Cr~el~~L~e~~pef~  260 (399)
                      ..+.+|+.+|.|.|+++.                +.+|++++|+++ +++++||.|+...|||.|+.++..|++++++|+
T Consensus        46 ~~l~vG~~aPdF~l~~~~----------------d~~G~~vsLsd~-~Gk~vvL~F~~~~~cp~C~~el~~l~~l~~~~~  108 (240)
T 3qpm_A           46 SKAKISKPAPQWEGTAVI----------------NGEFKELKLSDY-RGKYLVFFFYPLDFTFVCPTEIIAFSDRVHEFR  108 (240)
T ss_dssp             CSCCTTSBCCCCEEEEEE----------------TTEEEEEEGGGG-TTSEEEEEECSCTTSSHHHHHHHHHHHHHHHHH
T ss_pred             CcCCCCCCCCCcEeeeee----------------CCCCcEEEHHHh-CCCEEEEEEECCCCCCchHHHHHHHHHHHHHHH
Confidence            356789999977766541                224789999996 677999999999999999999999999999999


Q ss_pred             hcCCeEEEEecCChhhHHhhhcCC--------CCCceeEeccchHHHHHhCCCcccccccccccccCHHHHHHHHHHHhc
Q 015842          261 ALGIQLFAVLHEYIESEVKDFWPR--------YWGGVVVYDQGMEFFKALGGGKLLKDKFLSGFLLNPRAIANYKRARTL  332 (399)
Q Consensus       261 alGV~LVaIspE~~e~~ik~F~~~--------~l~f~VLsDp~r~lYkaLGl~r~~r~s~lsgfl~~P~v~~~~~rA~~~  332 (399)
                      +.|+++|+|+.++.+. .+.|.+.        .++|++++|++..++++||+..           .              
T Consensus       109 ~~gv~vv~Is~D~~~~-~~~~~~~~~~~~~~~~~~fp~l~D~~~~v~~~ygv~~-----------~--------------  162 (240)
T 3qpm_A          109 AINTEVVACSVDSQFT-HLAWIITPRKQGGLGPMKIPLLSDLTHQISKDYGVYL-----------E--------------  162 (240)
T ss_dssp             TTTEEEEEEESSCHHH-HHHHHHSCGGGTCCCSCSSCEEECTTSHHHHHTTCEE-----------T--------------
T ss_pred             HCCCEEEEEECCCHHH-HHHHHHHHHhhcCCCCCceeEEeCchHHHHHHhCCcc-----------c--------------
Confidence            9999999999988764 6667642        6899999999999999999841           0              


Q ss_pred             CCccccCCCCcccceEEEEecCCCcEEEEEecCCCCCCCCHHHHHHHHHhhhhh
Q 015842          333 GVEQNFKGEGEIKGGLFIVGRGRSGIAYQFIERNFGDWAPLAEVIEICTQLQDQ  386 (399)
Q Consensus       333 G~~gn~~GD~~qLGGtFVId~gGg~I~yah~d~d~gDrad~eeVLaAl~~l~~~  386 (399)
                             ..+...|++||||++| +|+|.+...... ..+++++|++++.++..
T Consensus       163 -------~~g~~~p~~flID~~G-~I~~~~~~~~~~-~~~~~eil~~l~~lq~~  207 (240)
T 3qpm_A          163 -------DQGHTLRGLFIIDEKG-VLRQITMNDLPV-GRSVDETLRLVQAFQYT  207 (240)
T ss_dssp             -------TTTEECEEEEEECTTS-BEEEEEEECTTB-CCCHHHHHHHHHHHHHH
T ss_pred             -------cCCCccceEEEEcCCC-eEEEEEecCCCC-CCCHHHHHHHHHHhhhh
Confidence                   0123568999999996 999999876443 44789999999988743

>4f82_A Thioredoxin reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.85A {Burkholderia cenocepacia}

Probab=99.81  E-value=9.5e-20  Score=166.23  Aligned_cols=161  Identities=14%  Similarity=0.071  Sum_probs=121.1

Q ss_pred             CCCCCCCCCcccccCccccccchhhhcccccccccCCCceechhhccCCCEEEEeecCCCCcchHH-HHHHHHhccchhh
Q 015842          182 PPVNEKVAPYSAIENISIQKLTPEYKIGMERLVKTKTPPMKALELWRESPAVLLCIRRPGCIMCRA-EAHQLYAKKPIFD  260 (399)
Q Consensus       182 a~~~~~~apl~~L~~i~l~~l~~~~~~g~~~~v~~~G~~VsLsdL~~~~pvVLvFyRg~gCP~Cr~-el~~L~e~~pef~  260 (399)
                      -.++||..|     ++++..+++....+|.    ..-++|+|+++++++++||+||++.|||.|+. |+.+|++.+++|+
T Consensus         9 ~~~~~~~~p-----~~~~~~~~~~~~~~~~----~~~~~vsLsd~~~Gk~vVL~fyP~~~tp~Ct~~El~~f~~~~~ef~   79 (176)
T 4f82_A            9 MIQVGDALP-----DAQLFEFIDDAREGCT----LGPNACSVRDQVAGKRVVIFGLPGAFTPTCSAQHVPGYVEHAEQLR   79 (176)
T ss_dssp             CCCTTCBCC-----CCEEEEEECSCCTTCC----SEEEEEEHHHHHTTCEEEEEEESCTTCHHHHHTHHHHHHHHHHHHH
T ss_pred             hhhcCCcCC-----ceEEEEeccccccccc----CCceEEeHHHHhCCCeEEEEEEcCCCCCCCCHHHHHHHHHHHHHHH
Confidence            357889888     6666655531000000    01268999999899999999999999999999 9999999999999


Q ss_pred             hcCC-eEEEEecCChhhHHhhhcC-CCCC--ceeEeccchHHHHHhCCCcccccccccccccCHHHHHHHHHHHhcCCcc
Q 015842          261 ALGI-QLFAVLHEYIESEVKDFWP-RYWG--GVVVYDQGMEFFKALGGGKLLKDKFLSGFLLNPRAIANYKRARTLGVEQ  336 (399)
Q Consensus       261 alGV-~LVaIspE~~e~~ik~F~~-~~l~--f~VLsDp~r~lYkaLGl~r~~r~s~lsgfl~~P~v~~~~~rA~~~G~~g  336 (399)
                      ++|+ ++|+||++++.. .+.|.+ ..++  |++++|++.++.++||+...          . +          ..|+  
T Consensus        80 ~~g~d~VigIS~D~~~~-~~~f~~~~~l~~~f~lLsD~~~~va~ayGv~~~----------~-~----------~~G~--  135 (176)
T 4f82_A           80 AAGIDEIWCVSVNDAFV-MGAWGRDLHTAGKVRMMADGSAAFTHALGLTQD----------L-S----------ARGM--  135 (176)
T ss_dssp             HTTCCEEEEEESSCHHH-HHHHHHHTTCTTTSEEEECTTCHHHHHHTCEEE----------C-G----------GGTC--
T ss_pred             hCCCCEEEEEeCCCHHH-HHHHHHHhCCCCCceEEEcCchHHHHHhCCCcc----------c-c----------ccCC--
Confidence            9999 999999999875 788885 6787  99999999999999999520          0 0          0011  


Q ss_pred             ccCCCCcccceEEEEecCCCcEEEEEecCCC-CCCCCHHHHHHHHH
Q 015842          337 NFKGEGEIKGGLFIVGRGRSGIAYQFIERNF-GDWAPLAEVIEICT  381 (399)
Q Consensus       337 n~~GD~~qLGGtFVId~gGg~I~yah~d~d~-gDrad~eeVLaAl~  381 (399)
                         | ....+++||| ++| +|+|.+++..- .+..+.++||++|+
T Consensus       136 ---g-~~s~R~tfII-~dG-~I~~~~~~~~~~~~~~~a~~vL~~Lk  175 (176)
T 4f82_A          136 ---G-IRSLRYAMVI-DGG-VVKTLAVEAPGKFEVSDAASVLATLT  175 (176)
T ss_dssp             ---C-EEECCEEEEE-ETT-EEEEEEECCTTCCSSSSHHHHHHTCC
T ss_pred             ---C-cccccEEEEE-cCC-EEEEEEEcCCCCcchhhHHHHHHHhh
Confidence               0 1235899999 886 99999998732 13446677776653

>1prx_A HORF6; peroxiredoxin, hydrogen peroxide, redox regulation, cellular signaling, antioxidant; 2.00A {Homo sapiens} SCOP: c.47.1.10

Probab=99.81  E-value=3.5e-19  Score=165.94  Aligned_cols=157  Identities=16%  Similarity=0.158  Sum_probs=125.4

Q ss_pred             CCCCCCCCCcccccCccccccchhhhcccccccccCCCceechhhccCCCEEEEeecCCCCcchHHHHHHHHhccchhhh
Q 015842          182 PPVNEKVAPYSAIENISIQKLTPEYKIGMERLVKTKTPPMKALELWRESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDA  261 (399)
Q Consensus       182 a~~~~~~apl~~L~~i~l~~l~~~~~~g~~~~v~~~G~~VsLsdL~~~~pvVLvFyRg~gCP~Cr~el~~L~e~~pef~a  261 (399)
                      .+..|+.+|.|.+++.                   +| +++++++..++++||+||...|||.|+.++.+|++++++|++
T Consensus         4 ~l~~G~~aP~F~l~~~-------------------~G-~v~l~d~~Gk~~vvL~~~~a~~cp~C~~el~~l~~l~~~f~~   63 (224)
T 1prx_A            4 GLLLGDVAPNFEANTT-------------------VG-RIRFHDFLGDSWGILFSHPRDFTPVCTTELGRAAKLAPEFAK   63 (224)
T ss_dssp             -CCTTCBCCCCEEEET-------------------TE-EEEHHHHHTTSEEEEEEESCSSCHHHHHHHHHHHHHHHHHHT
T ss_pred             cCCCcCCCCCcEEecC-------------------CC-CEEHHHHcCCCeEEEEEECCCCCCCcHHHHHHHHHHHHHHHH
Confidence            4578999997766555                   48 899999766668999999999999999999999999999999


Q ss_pred             cCCeEEEEecCChhhHHhhhcC-----------CCCCceeEeccchHHHHHhCCCcccccccccccccCHHHHHHHHHHH
Q 015842          262 LGIQLFAVLHEYIESEVKDFWP-----------RYWGGVVVYDQGMEFFKALGGGKLLKDKFLSGFLLNPRAIANYKRAR  330 (399)
Q Consensus       262 lGV~LVaIspE~~e~~ik~F~~-----------~~l~f~VLsDp~r~lYkaLGl~r~~r~s~lsgfl~~P~v~~~~~rA~  330 (399)
                      .|+++|+|+.++.+. ++.|.+           ..++|++++|++++++++||+..             +.         
T Consensus        64 ~~v~vi~IS~D~~~~-~~~~~~~i~~~~~~~~~~~~~fpil~D~~~~va~~ygv~~-------------~~---------  120 (224)
T 1prx_A           64 RNVKLIALSIDSVED-HLAWSKDINAYNSEEPTEKLPFPIIDDRNRELAILLGMLD-------------PA---------  120 (224)
T ss_dssp             TTEEEEEEESSCHHH-HHHHHHHHHHHTTSCCCSCCSSCEEECTTCHHHHHTTSSC-------------SC---------
T ss_pred             CCCEEEEEcCCCHHH-HHHHHHHHHHhhCcccccCcCcceeecCchHHHHHhCCCC-------------cc---------
Confidence            999999999988764 555553           57899999999999999999852             10         


Q ss_pred             hcCCccccCCCCcccceEEEEecCCCcEEEEEecCCCCCCCCHHHHHHHHHhhhhhh
Q 015842          331 TLGVEQNFKGEGEIKGGLFIVGRGRSGIAYQFIERNFGDWAPLAEVIEICTQLQDQQ  387 (399)
Q Consensus       331 ~~G~~gn~~GD~~qLGGtFVId~gGg~I~yah~d~d~gDrad~eeVLaAl~~l~~~~  387 (399)
                        ..  +..|-....|++||||++| +|++.+.......+ +.++|++++++++...
T Consensus       121 --~~--~~~g~~~~~p~~fiID~~G-~I~~~~~~~~~~gr-~~~eil~~i~~l~~~~  171 (224)
T 1prx_A          121 --EK--DEKGMPVTARVVFVFGPDK-KLKLSILYPATTGR-NFDEILRVVISLQLTA  171 (224)
T ss_dssp             --TT--CSSSCCTTCCEEEEECTTS-BEEEEEECCTTBCC-CHHHHHHHHHHHHHHH
T ss_pred             --cc--cCCCccccceEEEEECCCC-EEEEEEecCCCCCC-CHHHHHHHHHHHHhhc
Confidence              00  0012234579999999996 99999987755444 7899999999987643

>2pn8_A Peroxiredoxin-4; thioredoxin, oxidoreductase, structural genomics consortium, SGC; 1.80A {Homo sapiens}

Probab=99.80  E-value=3.1e-19  Score=164.08  Aligned_cols=156  Identities=13%  Similarity=0.066  Sum_probs=124.3

Q ss_pred             CCCCCCCCCCCcccccCccccccchhhhcccccccccCCCceechhhccCCCEEEEeecCCCCcchHHHHHHHHhccchh
Q 015842          180 QAPPVNEKVAPYSAIENISIQKLTPEYKIGMERLVKTKTPPMKALELWRESPAVLLCIRRPGCIMCRAEAHQLYAKKPIF  259 (399)
Q Consensus       180 ~~a~~~~~~apl~~L~~i~l~~l~~~~~~g~~~~v~~~G~~VsLsdL~~~~pvVLvFyRg~gCP~Cr~el~~L~e~~pef  259 (399)
                      ...+.+|+.+|.|.|++..                +.+|++++++++ +++++||.|++..|||.|+.++..|++++++|
T Consensus        16 ~~~~~~G~~aP~f~l~~~~----------------~~~g~~v~l~d~-~Gk~vvl~F~pat~C~~C~~e~~~l~~l~~~~   78 (211)
T 2pn8_A           16 ENLYFQSMPAPYWEGTAVI----------------DGEFKELKLTDY-RGKYLVFFFYPLDFTFVCPTEIIAFGDRLEEF   78 (211)
T ss_dssp             ---CCSSCBCCCCEEEEEE----------------TTEEEEEEGGGG-TTSEEEEEECSCTTSSHHHHHHHHHHHTHHHH
T ss_pred             cccCCCCCcCCCeEeeccc----------------CCCCcEEEHHHh-CCCeEEEEEECCCCCCCCHHHHHHHHHHHHHH
Confidence            3466889999977766540                113789999996 67799999999999999999999999999999


Q ss_pred             hhcCCeEEEEecCChhhHHhhhcC-C-------CCCceeEeccchHHHHHhCCCcccccccccccccCHHHHHHHHHHHh
Q 015842          260 DALGIQLFAVLHEYIESEVKDFWP-R-------YWGGVVVYDQGMEFFKALGGGKLLKDKFLSGFLLNPRAIANYKRART  331 (399)
Q Consensus       260 ~alGV~LVaIspE~~e~~ik~F~~-~-------~l~f~VLsDp~r~lYkaLGl~r~~r~s~lsgfl~~P~v~~~~~rA~~  331 (399)
                      ++.|+++|+|+.++++. ++.|.+ .       .++|++++|++..++++||+..           .  .          
T Consensus        79 ~~~~v~vv~Is~D~~~~-~~~~~~~~~~~~g~~~~~fp~l~D~~~~~~~~ygv~~-----------~--~----------  134 (211)
T 2pn8_A           79 RSINTEVVACSVDSQFT-HLAWINTPRRQGGLGPIRIPLLSDLTHQISKDYGVYL-----------E--D----------  134 (211)
T ss_dssp             HTTTEEEEEEESSCHHH-HHHHHTSCGGGTCCCSCSSCEEECTTSHHHHHTTCEE-----------T--T----------
T ss_pred             HHCCCEEEEEECCCHHH-HHHHHHHhhhccCccCCceEEEECCchHHHHHcCCcc-----------c--C----------
Confidence            99999999999988764 777775 3       5799999999999999999841           0  0          


Q ss_pred             cCCccccCCCCcccceEEEEecCCCcEEEEEecCCCCCCCCHHHHHHHHHhhhhhh
Q 015842          332 LGVEQNFKGEGEIKGGLFIVGRGRSGIAYQFIERNFGDWAPLAEVIEICTQLQDQQ  387 (399)
Q Consensus       332 ~G~~gn~~GD~~qLGGtFVId~gGg~I~yah~d~d~gDrad~eeVLaAl~~l~~~~  387 (399)
                               .+...|.+||||++| +|+|.+++..... .++++++++++.++..+
T Consensus       135 ---------~g~~~p~~~lID~~G-~I~~~~~g~~~~~-~~~~ell~~l~~l~~~~  179 (211)
T 2pn8_A          135 ---------SGHTLRGLFIIDDKG-ILRQITLNDLPVG-RSVDETLRLVQAFQYTD  179 (211)
T ss_dssp             ---------TTEECEEEEEECTTS-BEEEEEEECTTBC-CCHHHHHHHHHHHHHHH
T ss_pred             ---------CCcccceEEEECCCC-EEEEEEecCCCCC-CCHHHHHHHHHHhhhcc
Confidence                     013479999999996 9999998753332 47899999999987543

>3tjj_A Peroxiredoxin-4; thioredoxin fold, sulfenylation, endoplasmic reticulum, oxidoreductase; HET: CSO; 1.91A {Homo sapiens} PDB: 3tjk_A 3tjb_A 3tjf_A 3tjg_A 3tkq_A 3tkp_A 3tks_A 3tkr_A 3tks_C

Probab=99.80  E-value=2.5e-19  Score=170.56  Aligned_cols=154  Identities=14%  Similarity=0.072  Sum_probs=126.3

Q ss_pred             CCCCCCCCCCcccccCccccccchhhhcccccccccCCCceechhhccCCCEEEEeecCCCCcchHHHHHHHHhccchhh
Q 015842          181 APPVNEKVAPYSAIENISIQKLTPEYKIGMERLVKTKTPPMKALELWRESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFD  260 (399)
Q Consensus       181 ~a~~~~~~apl~~L~~i~l~~l~~~~~~g~~~~v~~~G~~VsLsdL~~~~pvVLvFyRg~gCP~Cr~el~~L~e~~pef~  260 (399)
                      ..+.+|+.+|.|.|+++.                +.+|++|+|+++ +++++||+|++..|||.|+.++.+|++++++|+
T Consensus        60 ~~l~vG~~aPdF~l~~l~----------------d~~G~~vsLsd~-kGK~vvL~F~~a~~cp~C~~el~~l~~l~~~~~  122 (254)
T 3tjj_A           60 SKAKISKPAPYWEGTAVI----------------DGEFKELKLTDY-RGKYLVFFFYPLDFTFVCPTEIIAFGDRLEEFR  122 (254)
T ss_dssp             CCCCTTSBCCCCEEEEEE----------------TTEEEEEEGGGG-TTSEEEEEECSCTTCSSCCHHHHHHHHTHHHHH
T ss_pred             cccCCCCCCCCcEeeeec----------------CCCCcEEeHHHH-CCCeEEEEEECCCCCCchHHHHHHHHHHHHHHH
Confidence            466789999977766541                224889999996 677899999999999999999999999999999


Q ss_pred             hcCCeEEEEecCChhhHHhhhcCC--------CCCceeEeccchHHHHHhCCCcccccccccccccCHHHHHHHHHHHhc
Q 015842          261 ALGIQLFAVLHEYIESEVKDFWPR--------YWGGVVVYDQGMEFFKALGGGKLLKDKFLSGFLLNPRAIANYKRARTL  332 (399)
Q Consensus       261 alGV~LVaIspE~~e~~ik~F~~~--------~l~f~VLsDp~r~lYkaLGl~r~~r~s~lsgfl~~P~v~~~~~rA~~~  332 (399)
                      +.|+++|+|+.++.+. .+.|.+.        .++|++++|++..++++||+..             +            
T Consensus       123 ~~gv~vv~IS~D~~~~-~~~~~~~~~~~~g~~~~~fp~l~D~~~~va~~ygv~~-------------~------------  176 (254)
T 3tjj_A          123 SINTEVVACSVDSQFT-HLAWINTPRRQGGLGPIRIPLLSDLTHQISKDYGVYL-------------E------------  176 (254)
T ss_dssp             TTTEEEEEEESSCHHH-HHHHHTSCGGGTSCCSCSSCEEECTTSHHHHHHTCEE-------------T------------
T ss_pred             HcCCEEEEEcCCCHHH-HHHHHHHHHHhcCCcccccceeeCcHHHHHHHcCCcc-------------c------------
Confidence            9999999999998764 6777642        6899999999999999999841             0            


Q ss_pred             CCccccCCCCcccceEEEEecCCCcEEEEEecCCCCCCCCHHHHHHHHHhhhhh
Q 015842          333 GVEQNFKGEGEIKGGLFIVGRGRSGIAYQFIERNFGDWAPLAEVIEICTQLQDQ  386 (399)
Q Consensus       333 G~~gn~~GD~~qLGGtFVId~gGg~I~yah~d~d~gDrad~eeVLaAl~~l~~~  386 (399)
                             ..+...|++||||++| +|+|.++..... ..+++++|++++.++..
T Consensus       177 -------~~g~~~p~tflID~~G-~I~~~~~~~~~~-~~~~~eil~~L~alq~~  221 (254)
T 3tjj_A          177 -------DSGHTLRGLFIIDDKG-ILRQITLNDLPV-GRSVDETLRLVQAFQYT  221 (254)
T ss_dssp             -------TTTEECEEEEEECTTS-BEEEEEEECTTC-CCCHHHHHHHHHHHHHH
T ss_pred             -------cCCCccceEEEECCCC-eEEEEEecCCCC-CCCHHHHHHHHHhhccc
Confidence                   0123568999999996 999999986543 34789999999888743

>2v2g_A Peroxiredoxin 6; oxidoreductase, antioxidant enzymes; 1.60A {Arenicola marina} PDB: 2v32_A 2v41_A

Probab=99.80  E-value=2.9e-19  Score=168.37  Aligned_cols=156  Identities=16%  Similarity=0.146  Sum_probs=125.2

Q ss_pred             CCCCCCCCcccccCccccccchhhhcccccccccCCCceechhhccCCCEEEEeecCCCCcchHHHHHHHHhccchhhhc
Q 015842          183 PVNEKVAPYSAIENISIQKLTPEYKIGMERLVKTKTPPMKALELWRESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDAL  262 (399)
Q Consensus       183 ~~~~~~apl~~L~~i~l~~l~~~~~~g~~~~v~~~G~~VsLsdL~~~~pvVLvFyRg~gCP~Cr~el~~L~e~~pef~al  262 (399)
                      +..|+.+|.|.+++.                   +| +++|+++..++++||+|++..|||.|+.++.+|++++++|++.
T Consensus         3 l~iG~~aPdF~l~~~-------------------~G-~v~l~d~~Gk~~vvL~f~pa~~cpvC~~el~~l~~l~~ef~~~   62 (233)
T 2v2g_A            3 ITLGEVFPNFEADST-------------------IG-KLKFHDWLGNSWGVLFSHPRDFTPVSTTELGRVIQLEGDFKKR   62 (233)
T ss_dssp             CCTTCBCCCCEEEET-------------------TC-CEEHHHHHCSSEEEEEECSCSSCHHHHHHHHHHHHTHHHHHHT
T ss_pred             CCCCCCCCCcEEecC-------------------CC-CEEHHHHCCCCeEEEEEECCCCCCCcHHHHHHHHHHHHHHHHc
Confidence            568899997766655                   48 8999997665589999999999999999999999999999999


Q ss_pred             CCeEEEEecCChhhHHhhhcC-------C--CCCceeEeccchHHHHHhCCCcccccccccccccCHHHHHHHHHHHhcC
Q 015842          263 GIQLFAVLHEYIESEVKDFWP-------R--YWGGVVVYDQGMEFFKALGGGKLLKDKFLSGFLLNPRAIANYKRARTLG  333 (399)
Q Consensus       263 GV~LVaIspE~~e~~ik~F~~-------~--~l~f~VLsDp~r~lYkaLGl~r~~r~s~lsgfl~~P~v~~~~~rA~~~G  333 (399)
                      |+++|+|+.++.+. ++.|.+       .  .++|++++|++++++++||+..             +..           
T Consensus        63 ~v~vigIS~D~~~~-~~~~~~~i~~~~~~~~~~~fpil~D~~~~va~~ygv~~-------------~~~-----------  117 (233)
T 2v2g_A           63 GVKLIALSCDNVAD-HKEWSEDVKCLSGVKGDMPYPIIADETRELAVKLGMVD-------------PDE-----------  117 (233)
T ss_dssp             TEEEEEEESSCHHH-HHHHHHHHHHHHTCCSSCSSCEEECTTCHHHHHTTCEE-------------EEE-----------
T ss_pred             CCEEEEEcCCCHHH-HHHHHHHHHHhhCcccCCceEEEECChHHHHHHhCCcC-------------ccc-----------
Confidence            99999999988764 566664       3  6899999999999999999852             000           


Q ss_pred             CccccCCCCcccceEEEEecCCCcEEEEEecCCCCCCCCHHHHHHHHHhhhhhh
Q 015842          334 VEQNFKGEGEIKGGLFIVGRGRSGIAYQFIERNFGDWAPLAEVIEICTQLQDQQ  387 (399)
Q Consensus       334 ~~gn~~GD~~qLGGtFVId~gGg~I~yah~d~d~gDrad~eeVLaAl~~l~~~~  387 (399)
                      .  +..|.....|++||||++| +|++.+.......+ +.++||+++++++...
T Consensus       118 ~--~~~g~~~~~p~~fiID~~G-~I~~~~~~~~~~gr-~~~eilr~l~~Lq~~~  167 (233)
T 2v2g_A          118 R--TSTGMPLTCRAVFIIGPDK-KLKLSILYPATTGR-NFSEILRVIDSLQLTA  167 (233)
T ss_dssp             E--CTTCCEEECEEEEEECTTS-BEEEEEEECTTBCC-CHHHHHHHHHHHHHHH
T ss_pred             c--cCCCcccccceEEEECCCC-EEEEEEecCCCCCC-CHHHHHHHHHHHHhhc
Confidence            0  0012234579999999996 99999987654444 7899999999987654

>1xvw_A Hypothetical protein RV2238C/MT2298; thioredoxin fold, oxidized cystein sulfenic acid, structural genomics, PSI; 1.90A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 1xxu_A

Probab=99.80  E-value=6e-19  Score=151.47  Aligned_cols=148  Identities=15%  Similarity=0.067  Sum_probs=123.1

Q ss_pred             CCCCCCCCcccccCccccccchhhhcccccccccCCCceechhhccCCCEEEEeecCCCCcchHHHHHHHHhccchhhhc
Q 015842          183 PVNEKVAPYSAIENISIQKLTPEYKIGMERLVKTKTPPMKALELWRESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDAL  262 (399)
Q Consensus       183 ~~~~~~apl~~L~~i~l~~l~~~~~~g~~~~v~~~G~~VsLsdL~~~~pvVLvFyRg~gCP~Cr~el~~L~e~~pef~al  262 (399)
                      +.+|+.+|.|.|.+.                   +|++++++++..++++||.|++..|||.|+.++..|.+++.++.+.
T Consensus         9 ~~~G~~~p~f~l~~~-------------------~G~~~~l~~~~gk~~vvl~F~~a~~C~~C~~~~~~l~~~~~~~~~~   69 (160)
T 1xvw_A            9 LNVGATAPDFTLRDQ-------------------NQQLVTLRGYRGAKNVLLVFFPLAFTGICQGELDQLRDHLPEFEND   69 (160)
T ss_dssp             CCTTSBCCCCEEECT-------------------TSCEEEGGGGTTTCEEEEEECSCTTSSHHHHHHHHHHHTGGGTSSS
T ss_pred             CCCCCCCCCeEeEcC-------------------CCCEEeHHHhcCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHHHC
Confidence            578888997666555                   4999999997544489999999999999999999999999999988


Q ss_pred             CCeEEEEecCChhhHHhhhcC-CCCCceeEecc--chHHHHHhCCCcccccccccccccCHHHHHHHHHHHhcCCccccC
Q 015842          263 GIQLFAVLHEYIESEVKDFWP-RYWGGVVVYDQ--GMEFFKALGGGKLLKDKFLSGFLLNPRAIANYKRARTLGVEQNFK  339 (399)
Q Consensus       263 GV~LVaIspE~~e~~ik~F~~-~~l~f~VLsDp--~r~lYkaLGl~r~~r~s~lsgfl~~P~v~~~~~rA~~~G~~gn~~  339 (399)
                      |+++|+|+.++++. ++.|.+ ..++|++++|.  +..++++||+..           . .                   
T Consensus        70 ~~~vv~is~d~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~v~~-----------~-~-------------------  117 (160)
T 1xvw_A           70 DSAALAISVGPPPT-HKIWATQSGFTFPLLSDFWPHGAVSQAYGVFN-----------E-Q-------------------  117 (160)
T ss_dssp             SEEEEEEESCCHHH-HHHHHHHHTCCSCEEECTTTTTHHHHHTTCEE-----------T-T-------------------
T ss_pred             CcEEEEEeCCCHHH-HHHHHHhcCCCceEEecCCcChHHHHHcCCcc-----------c-c-------------------
Confidence            99999999988764 777775 67899999995  999999999841           0 0                   


Q ss_pred             CCCcccceEEEEecCCCcEEEEEecCCCCCCCCHHHHHHHHHhhh
Q 015842          340 GEGEIKGGLFIVGRGRSGIAYQFIERNFGDWAPLAEVIEICTQLQ  384 (399)
Q Consensus       340 GD~~qLGGtFVId~gGg~I~yah~d~d~gDrad~eeVLaAl~~l~  384 (399)
                       .+.+.|.+||||++| +|++.|.+. .....++++++++++.++
T Consensus       118 -~~~p~~~~~lid~~G-~i~~~~~g~-~~~~~~~~~l~~~l~~l~  159 (160)
T 1xvw_A          118 -AGIANRGTFVVDRSG-IIRFAEMKQ-PGEVRDQRLWTDALAALT  159 (160)
T ss_dssp             -TTEECSEEEEECTTS-BEEEEEECC-TTCCCCHHHHHHHHHHTC
T ss_pred             -CCCeeeeEEEECCCC-eEEEEEecC-CCCCCCHHHHHHHHHHhc
Confidence             123345999999996 899999987 677889999999998765

>1we0_A Alkyl hydroperoxide reductase C; peroxiredoxin, AHPC, oxidoreductase; 2.90A {Amphibacillus xylanus} SCOP: c.47.1.10

Probab=99.80  E-value=3.6e-19  Score=158.12  Aligned_cols=148  Identities=11%  Similarity=0.079  Sum_probs=121.8

Q ss_pred             CCCCCCCcccccCccccccchhhhcccccccccCCC----ceechhhccCCCEEEEeecCCCCcchHHHHHHHHhccchh
Q 015842          184 VNEKVAPYSAIENISIQKLTPEYKIGMERLVKTKTP----PMKALELWRESPAVLLCIRRPGCIMCRAEAHQLYAKKPIF  259 (399)
Q Consensus       184 ~~~~~apl~~L~~i~l~~l~~~~~~g~~~~v~~~G~----~VsLsdL~~~~pvVLvFyRg~gCP~Cr~el~~L~e~~pef  259 (399)
                      ++|+.+|.|.|++.                   +|+    +++++++ +++++||.|+|..|||.|+.++..|.+++.++
T Consensus         2 ~~G~~~P~f~l~~~-------------------~g~~~~~~~~l~~~-~gk~vvl~F~~a~~C~~C~~~~~~l~~~~~~~   61 (187)
T 1we0_A            2 LIGTEVQPFRAQAF-------------------QSGKDFFEVTEADL-KGKWSIVVFYPADFSFVCPTELEDVQKEYAEL   61 (187)
T ss_dssp             CTTCBCCCCEEEEE-------------------CSSSCCEEEETTTT-SSSEEEEEECSCTTCSSCTHHHHHHHHHHHHH
T ss_pred             CCCCcCCCeEEecc-------------------CCCccceEecHHHH-CCCCEEEEEECCCCCcchHHHHHHHHHHHHHH
Confidence            57888996666555                   367    9999997 66899999999999999999999999999999


Q ss_pred             hhcCCeEEEEecCChhhHHhhhcC-C----CCCceeEeccchHHHHHhCCCcccccccccccccCHHHHHHHHHHHhcCC
Q 015842          260 DALGIQLFAVLHEYIESEVKDFWP-R----YWGGVVVYDQGMEFFKALGGGKLLKDKFLSGFLLNPRAIANYKRARTLGV  334 (399)
Q Consensus       260 ~alGV~LVaIspE~~e~~ik~F~~-~----~l~f~VLsDp~r~lYkaLGl~r~~r~s~lsgfl~~P~v~~~~~rA~~~G~  334 (399)
                      .+.|+++|+|+.+.++. ++.|.+ .    .++|++++|++..++++||+..           . .              
T Consensus        62 ~~~~v~vv~vs~d~~~~-~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~-----------~-~--------------  114 (187)
T 1we0_A           62 KKLGVEVYSVSTDTHFV-HKAWHENSPAVGSIEYIMIGDPSQTISRQFDVLN-----------E-E--------------  114 (187)
T ss_dssp             HHTTEEEEEEESSCHHH-HHHHHHSCHHHHTCCSEEEECTTCHHHHHTTCEE-----------T-T--------------
T ss_pred             HHcCCEEEEEECCCHHH-HHHHHHHhccccCCCceEEECCchHHHHHhCCCc-----------C-C--------------
Confidence            99999999999988764 777775 3    6899999999999999999851           0 0              


Q ss_pred             ccccCCCCcccceEEEEecCCCcEEEEEecCCCCCCCCHHHHHHHHHhhhhh
Q 015842          335 EQNFKGEGEIKGGLFIVGRGRSGIAYQFIERNFGDWAPLAEVIEICTQLQDQ  386 (399)
Q Consensus       335 ~gn~~GD~~qLGGtFVId~gGg~I~yah~d~d~gDrad~eeVLaAl~~l~~~  386 (399)
                            .+...|.+||||++| +|++.|......+ .+.++|+++++.+...
T Consensus       115 ------~g~~~P~~~lid~~G-~i~~~~~g~~~~~-~~~~~l~~~l~~l~~~  158 (187)
T 1we0_A          115 ------TGLADRGTFIIDPDG-VIQAIEINADGIG-RDASTLINKVKAAQYV  158 (187)
T ss_dssp             ------TTEECEEEEEECTTS-BEEEEEEECTTSC-CCTTHHHHHHHHHHHH
T ss_pred             ------CCceeeEEEEECCCC-eEEEEEecCCCCC-CCHHHHHHHHHHHhhh
Confidence                  123578999999996 8999998875443 3678899888888653

>2c0d_A Thioredoxin peroxidase 2; peroxiredoxin, 2-Cys, thioredoxin dependant, mitochondrial, antioxidant, oxidoreductase, redox-active center; 1.78A {Plasmodium falciparum}

Probab=99.80  E-value=6e-19  Score=164.07  Aligned_cols=152  Identities=13%  Similarity=0.072  Sum_probs=125.0

Q ss_pred             CCCCCCCCcccccCccccccchhhhcccccccccCC--CceechhhccCCCEEEEeecCCCCcchHHHHHHHHhccchhh
Q 015842          183 PVNEKVAPYSAIENISIQKLTPEYKIGMERLVKTKT--PPMKALELWRESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFD  260 (399)
Q Consensus       183 ~~~~~~apl~~L~~i~l~~l~~~~~~g~~~~v~~~G--~~VsLsdL~~~~pvVLvFyRg~gCP~Cr~el~~L~e~~pef~  260 (399)
                      +.+|+.+|.|.|++..                 .+|  ++++++++++++++||.|+|..|||.|+.++..|++++++++
T Consensus        25 l~~G~~aP~F~l~~~~-----------------~~G~~~~v~L~d~~~Gk~vvl~F~patwCp~C~~e~p~l~~l~~~~~   87 (221)
T 2c0d_A           25 SLVTKKAYNFTAQGLN-----------------KNNEIINVDLSSFIGQKYCCLLFYPLNYTFVCPTEIIEFNKHIKDFE   87 (221)
T ss_dssp             -CTTSBCCCCEEEEEC-----------------TTSCEEEEEGGGGTTTCEEEEEECCCCTTTCCHHHHHHHHHTHHHHH
T ss_pred             CCCCCCCCCeEEeccc-----------------cCCCccEEeHHHHcCCCeEEEEEEcCCCCCchHHHHHHHHHHHHHHH
Confidence            5788999976665541                 038  899999986888999999999999999999999999999999


Q ss_pred             hcCCeEEEEecCChhhHHhhhcC-C-------CCCceeEeccchHHHHHhCCCcccccccccccccCHHHHHHHHHHHhc
Q 015842          261 ALGIQLFAVLHEYIESEVKDFWP-R-------YWGGVVVYDQGMEFFKALGGGKLLKDKFLSGFLLNPRAIANYKRARTL  332 (399)
Q Consensus       261 alGV~LVaIspE~~e~~ik~F~~-~-------~l~f~VLsDp~r~lYkaLGl~r~~r~s~lsgfl~~P~v~~~~~rA~~~  332 (399)
                      +.|+++|+|+.++++. ++.|.+ .       .++|++++|++..++++||+. .            .            
T Consensus        88 ~~~v~vv~Is~D~~~~-~~~~~~~~~~~~g~~~~~fp~l~D~~~~~~~~ygv~-~------------~------------  141 (221)
T 2c0d_A           88 NKNVELLGISVDSVYS-HLAWKNMPIEKGGIGNVEFTLVSDINKDISKNYNVL-Y------------D------------  141 (221)
T ss_dssp             HTTEEEEEEESSCHHH-HHHHHHSCGGGTCCCSCSSEEEECTTSHHHHHTTCE-E------------T------------
T ss_pred             HCCCEEEEEeCCCHHH-HHHHHHHhhhhcCccCCceEEEECCchHHHHHcCCc-c------------c------------
Confidence            9999999999988764 677774 3       578999999999999999883 0            0            


Q ss_pred             CCccccCCCCcccceEEEEecCCCcEEEEEecCCCCCCCCHHHHHHHHHhhhhhh
Q 015842          333 GVEQNFKGEGEIKGGLFIVGRGRSGIAYQFIERNFGDWAPLAEVIEICTQLQDQQ  387 (399)
Q Consensus       333 G~~gn~~GD~~qLGGtFVId~gGg~I~yah~d~d~gDrad~eeVLaAl~~l~~~~  387 (399)
                              .+...|.+||||++| +|+|.+.... ....+.++|++++++++..+
T Consensus       142 --------~g~~~P~~~lID~~G-~I~~~~~g~~-~~~~~~~ell~~l~~L~~~~  186 (221)
T 2c0d_A          142 --------NSFALRGLFIIDKNG-CVRHQTVNDL-PIGRNVQEVLRTIDSIIHVD  186 (221)
T ss_dssp             --------TTEECEEEEEECTTS-BEEEEEEECT-TCCCCHHHHHHHHHHHHHHH
T ss_pred             --------CCCccceEEEECCCC-eEEEEEecCC-CCCCCHHHHHHHHHHHhhhh
Confidence                    013478999999996 9999998865 34468999999999987544

>2i81_A 2-Cys peroxiredoxin; structural genomics consortium, SGC, oxidoreductase; 2.45A {Plasmodium vivax sai-1} PDB: 2h66_A

Probab=99.79  E-value=1.1e-18  Score=160.74  Aligned_cols=153  Identities=10%  Similarity=0.067  Sum_probs=126.1

Q ss_pred             CCCCCCCCCCcccccCccccccchhhhcccccccccCC--CceechhhccCCCEEEEeecCCCCcchHHHHHHHHhccch
Q 015842          181 APPVNEKVAPYSAIENISIQKLTPEYKIGMERLVKTKT--PPMKALELWRESPAVLLCIRRPGCIMCRAEAHQLYAKKPI  258 (399)
Q Consensus       181 ~a~~~~~~apl~~L~~i~l~~l~~~~~~g~~~~v~~~G--~~VsLsdL~~~~pvVLvFyRg~gCP~Cr~el~~L~e~~pe  258 (399)
                      ..+.+|+.+|.|.|++..                 .+|  ++++++++++++++||.|++..|||.|+.++..|++++++
T Consensus        19 ~~l~~G~~aP~f~l~~~~-----------------~~G~~~~v~l~d~~~gk~vvl~F~pa~~C~~C~~~~~~l~~l~~~   81 (213)
T 2i81_A           19 SPTYVGKEAPFFKAEAVF-----------------GDNSFGEVNLTQFIGKKYVLLYFYPLDFTFVCPSEIIALDKALDA   81 (213)
T ss_dssp             -CCCBTSBCCCCEEEEEC-----------------TTSCEEEEEGGGGTTTCEEEEEECSCTTSSHHHHHHHHHHHTHHH
T ss_pred             ccccCCCcCCCeEeeccc-----------------cCCceeEEeHHHHcCCCeEEEEEEcCCCCCCCHHHHHHHHHHHHH
Confidence            356789999977665541                 138  8999999868889999999999999999999999999999


Q ss_pred             hhhcCCeEEEEecCChhhHHhhhcC-C-------CCCceeEeccchHHHHHhCCCcccccccccccccCHHHHHHHHHHH
Q 015842          259 FDALGIQLFAVLHEYIESEVKDFWP-R-------YWGGVVVYDQGMEFFKALGGGKLLKDKFLSGFLLNPRAIANYKRAR  330 (399)
Q Consensus       259 f~alGV~LVaIspE~~e~~ik~F~~-~-------~l~f~VLsDp~r~lYkaLGl~r~~r~s~lsgfl~~P~v~~~~~rA~  330 (399)
                      +++.|+++|+|+.++++. ++.|.+ .       .++|++++|++..++++||+..             +          
T Consensus        82 ~~~~~v~vv~Is~D~~~~-~~~~~~~~~~~~g~~~~~fp~l~D~~~~~~~~ygv~~-------------~----------  137 (213)
T 2i81_A           82 FHERNVELLGCSVDSKYT-HLAWKKTPLAKGGIGNIKHTLLSDITKSISKDYNVLF-------------D----------  137 (213)
T ss_dssp             HHHTTEEEEEEESSCHHH-HHHHHSSCGGGTCCCSCSSEEEECTTSHHHHHTTCEE-------------T----------
T ss_pred             HHHCCCEEEEEeCCCHHH-HHHHHHHHHhhCCccCCCceEEECCchHHHHHhCCcc-------------c----------
Confidence            999999999999998764 777775 3       6899999999999999999841             0          


Q ss_pred             hcCCccccCCCCcccceEEEEecCCCcEEEEEecCCCCCCCCHHHHHHHHHhhhhh
Q 015842          331 TLGVEQNFKGEGEIKGGLFIVGRGRSGIAYQFIERNFGDWAPLAEVIEICTQLQDQ  386 (399)
Q Consensus       331 ~~G~~gn~~GD~~qLGGtFVId~gGg~I~yah~d~d~gDrad~eeVLaAl~~l~~~  386 (399)
                                ++...|++||||++| +|+|.+.+..... .+.++|+++++.++..
T Consensus       138 ----------~g~~~p~~~lID~~G-~i~~~~~~~~~~~-~~~~ell~~l~~l~~~  181 (213)
T 2i81_A          138 ----------DSVSLRAFVLIDMNG-IVQHLLVNNLAIG-RSVDEILRIIDAIQHH  181 (213)
T ss_dssp             ----------TTEECEEEEEECTTS-BEEEEEEECTTCC-CCHHHHHHHHHHHHHH
T ss_pred             ----------cCCcccEEEEECCCC-EEEEEEecCCCCC-CCHHHHHHHHHHHHhh
Confidence                      013579999999996 8999998765433 4889999999998743

>2jsy_A Probable thiol peroxidase; solution structure, antioxidant, oxidoreductase; NMR {Bacillus subtilis} PDB: 2jsz_A

Probab=99.79  E-value=1.3e-18  Score=150.98  Aligned_cols=149  Identities=10%  Similarity=0.087  Sum_probs=125.5

Q ss_pred             CCCCCCCCCCCcccccCccccccchhhhcccccccccCCCceechhhccCCCEEEEeecCCCCcchHHHHHHHHhccchh
Q 015842          180 QAPPVNEKVAPYSAIENISIQKLTPEYKIGMERLVKTKTPPMKALELWRESPAVLLCIRRPGCIMCRAEAHQLYAKKPIF  259 (399)
Q Consensus       180 ~~a~~~~~~apl~~L~~i~l~~l~~~~~~g~~~~v~~~G~~VsLsdL~~~~pvVLvFyRg~gCP~Cr~el~~L~e~~pef  259 (399)
                      ...+.+|+.+|.|.|.+.                   +|++++++++ +++++||.|+..+|||.|+.++..|++++.++
T Consensus        15 ~~~~~~G~~~p~f~l~~~-------------------~G~~~~l~~~-~gk~~vl~F~~~~~C~~C~~~~~~l~~l~~~~   74 (167)
T 2jsy_A           15 GQEVKVGDQAPDFTVLTN-------------------SLEEKSLADM-KGKVTIISVIPSIDTGVCDAQTRRFNEEAAKL   74 (167)
T ss_dssp             SCCCCTTSCCCCCEEEBT-------------------TCCEEEHHHH-TTSCEEEEECSCSTTSHHHHTHHHHHHHHHHH
T ss_pred             cCccCCCCcCCceEEECC-------------------CCCEeeHHHh-CCCeEEEEEecCCCCCchHHHHHHHHHHHHHc
Confidence            345788999997766654                   4999999997 67799999999888999999999999999988


Q ss_pred             hhcCCeEEEEecCChhhHHhhhcC-CCC-CceeEec-cchHHHHHhCCCcccccccccccccCHHHHHHHHHHHhcCCcc
Q 015842          260 DALGIQLFAVLHEYIESEVKDFWP-RYW-GGVVVYD-QGMEFFKALGGGKLLKDKFLSGFLLNPRAIANYKRARTLGVEQ  336 (399)
Q Consensus       260 ~alGV~LVaIspE~~e~~ik~F~~-~~l-~f~VLsD-p~r~lYkaLGl~r~~r~s~lsgfl~~P~v~~~~~rA~~~G~~g  336 (399)
                        .|+++|+|+.++++. ++.|.+ ..+ +|++++| ++..++++||+..           . +                
T Consensus        75 --~~~~vv~is~d~~~~-~~~~~~~~~~~~~~~~~d~~~~~~~~~~~v~~-----------~-~----------------  123 (167)
T 2jsy_A           75 --GDVNVYTISADLPFA-QARWCGANGIDKVETLSDHRDMSFGEAFGVYI-----------K-E----------------  123 (167)
T ss_dssp             --SSCEEEEEECSSGGG-TSCCGGGSSCTTEEEEEGGGTCHHHHHTTCBB-----------T-T----------------
T ss_pred             --CCCEEEEEECCCHHH-HHHHHHhcCCCCceEeeCCchhHHHHHhCCcc-----------c-c----------------
Confidence              799999999988764 677775 667 8999999 9999999999851           0 1                


Q ss_pred             ccCCCCcccceEEEEecCCCcEEEEEecCCCCCCCCHHHHHHHHHhhh
Q 015842          337 NFKGEGEIKGGLFIVGRGRSGIAYQFIERNFGDWAPLAEVIEICTQLQ  384 (399)
Q Consensus       337 n~~GD~~qLGGtFVId~gGg~I~yah~d~d~gDrad~eeVLaAl~~l~  384 (399)
                          .+...|.+||||++| +|++.|.+.+..+++++++++++++++.
T Consensus       124 ----~g~~~p~~~lid~~G-~i~~~~~g~~~~~~~~~~~l~~~l~~ll  166 (167)
T 2jsy_A          124 ----LRLLARSVFVLDENG-KVVYAEYVSEATNHPNYEKPIEAAKALV  166 (167)
T ss_dssp             ----TCSBCCEEEEECTTS-CEEEEEECSBTTSCCCSHHHHHHHHHHH
T ss_pred             ----CCceeeEEEEEcCCC-cEEEEEecCCcCCCCCHHHHHHHHHHhh
Confidence                113468999999996 8999999998999999999999998864

>1nm3_A Protein HI0572; hybrid, peroxiredoxin, glutaredoxin, electron transport; 2.80A {Haemophilus influenzae} SCOP: c.47.1.1 c.47.1.10

Probab=99.79  E-value=6.1e-19  Score=163.45  Aligned_cols=152  Identities=13%  Similarity=0.135  Sum_probs=124.3

Q ss_pred             CCCCCCCCcccccCccccccchhhhcccccccccCCC--ceechhhccCCCEEEEeecCCCCcchH-HHHHHHHhccchh
Q 015842          183 PVNEKVAPYSAIENISIQKLTPEYKIGMERLVKTKTP--PMKALELWRESPAVLLCIRRPGCIMCR-AEAHQLYAKKPIF  259 (399)
Q Consensus       183 ~~~~~~apl~~L~~i~l~~l~~~~~~g~~~~v~~~G~--~VsLsdL~~~~pvVLvFyRg~gCP~Cr-~el~~L~e~~pef  259 (399)
                      +++|+.+|.|.|++.     .             +|+  +++|+++++++++||.||+..|||.|+ .|+..|+++++++
T Consensus         3 ~~~G~~aP~f~l~~~-----~-------------~g~~~~v~l~~~~~gk~vvl~f~~a~~cp~C~~~e~~~l~~~~~~~   64 (241)
T 1nm3_A            3 SMEGKKVPQVTFRTR-----Q-------------GDKWVDVTTSELFDNKTVIVFSLPGAFTPTCSSSHLPRYNELAPVF   64 (241)
T ss_dssp             CCTTSBCCCCEEEEE-----E-------------TTEEEEEEHHHHHTTSEEEEEEESCSSCHHHHHTHHHHHHHHHHHH
T ss_pred             ccCCCCCCCeEEEcc-----c-------------CCCceeecHHHHhCCCeEEEEEeCCCCCCCCCHHHHHHHHHHHHHH
Confidence            568899997776654     1             266  899999778889999999999999999 9999999999999


Q ss_pred             hhcCC-eEEEEecCChhhHHhhhcC-CCCC-ceeEeccchHHHHHhCCCcccccccccccccCHHHHHHHHHHHhcCCcc
Q 015842          260 DALGI-QLFAVLHEYIESEVKDFWP-RYWG-GVVVYDQGMEFFKALGGGKLLKDKFLSGFLLNPRAIANYKRARTLGVEQ  336 (399)
Q Consensus       260 ~alGV-~LVaIspE~~e~~ik~F~~-~~l~-f~VLsDp~r~lYkaLGl~r~~r~s~lsgfl~~P~v~~~~~rA~~~G~~g  336 (399)
                      ++.|+ ++|+|+.++++. ++.|.+ ..++ |++++|++.+++++||+...            +.         ..|+. 
T Consensus        65 ~~~~~~~vv~is~d~~~~-~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~~~------------~~---------~~g~~-  121 (241)
T 1nm3_A           65 KKYGVDDILVVSVNDTFV-MNAWKEDEKSENISFIPDGNGEFTEGMGMLVG------------KE---------DLGFG-  121 (241)
T ss_dssp             HHTTCCEEEEEESSCHHH-HHHHHHHTTCTTSEEEECTTSHHHHHTTCEEE------------CT---------TTTCC-
T ss_pred             HHCCCCEEEEEEcCCHHH-HHHHHHhcCCCceEEEECCCcHHHHHhCceee------------cc---------cccCc-
Confidence            99999 999999988764 788875 5676 99999999999999998520            00         00110 


Q ss_pred             ccCCCCcccceEEEEecCCCcEEEEEecCCCCCC----CCHHHHHHHHHh
Q 015842          337 NFKGEGEIKGGLFIVGRGRSGIAYQFIERNFGDW----APLAEVIEICTQ  382 (399)
Q Consensus       337 n~~GD~~qLGGtFVId~gGg~I~yah~d~d~gDr----ad~eeVLaAl~~  382 (399)
                           ....|++||| ++| +|+|.|++.+...+    .+++++|++++.
T Consensus       122 -----~~~~p~t~li-~~G-~i~~~~~~~~~~~~~~~~~~~~~il~~l~~  164 (241)
T 1nm3_A          122 -----KRSWRYSMLV-KNG-VVEKMFIEPNEPGDPFKVSDADTMLKYLAP  164 (241)
T ss_dssp             -----EEECCEEEEE-ETT-EEEEEEECCSCSSCCCSSSSHHHHHHHHCT
T ss_pred             -----ccceeEEEEE-ECC-EEEEEEEeccCCCccceecCHHHHHHHhhh
Confidence                 1246899999 896 99999999887766    789999998875

>2h01_A 2-Cys peroxiredoxin; thioredoxin peroxidase, structural genomics, SGC, structural genomics consortium, oxidoreductase; 2.30A {Plasmodium yoelii} SCOP: c.47.1.10

Probab=99.79  E-value=1e-18  Score=156.15  Aligned_cols=150  Identities=9%  Similarity=0.047  Sum_probs=123.1

Q ss_pred             CCCCCCCcccccCccccccchhhhcccccccccCC--CceechhhccCCCEEEEeecCCCCcchHHHHHHHHhccchhhh
Q 015842          184 VNEKVAPYSAIENISIQKLTPEYKIGMERLVKTKT--PPMKALELWRESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDA  261 (399)
Q Consensus       184 ~~~~~apl~~L~~i~l~~l~~~~~~g~~~~v~~~G--~~VsLsdL~~~~pvVLvFyRg~gCP~Cr~el~~L~e~~pef~a  261 (399)
                      ++|+.+|.|.|++..                 .+|  ++++++++++++++||.|++..|||.|+.++..|.+++.++++
T Consensus         1 ~~G~~aP~f~l~~~~-----------------~~G~~~~~~l~~~~~gk~vvl~F~~a~~C~~C~~~~~~l~~~~~~~~~   63 (192)
T 2h01_A            1 AFQGQAPSFKAEAVF-----------------GDNTFGEVSLSDFIGKKYVLLYFYPLDFTFVCPSEIIALDKALDSFKE   63 (192)
T ss_dssp             CCSSBCCCCEEEEEC-----------------TTSCEEEEEGGGGTTTCEEEEEECSCSSCSSCCHHHHHHHHTHHHHHH
T ss_pred             CCCCcCCCcEeEeee-----------------cCCceeEEeHHHHcCCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHH
Confidence            367888866665441                 138  8999999878889999999999999999999999999999999


Q ss_pred             cCCeEEEEecCChhhHHhhhcC-C-------CCCceeEeccchHHHHHhCCCcccccccccccccCHHHHHHHHHHHhcC
Q 015842          262 LGIQLFAVLHEYIESEVKDFWP-R-------YWGGVVVYDQGMEFFKALGGGKLLKDKFLSGFLLNPRAIANYKRARTLG  333 (399)
Q Consensus       262 lGV~LVaIspE~~e~~ik~F~~-~-------~l~f~VLsDp~r~lYkaLGl~r~~r~s~lsgfl~~P~v~~~~~rA~~~G  333 (399)
                      .|+++|+|+.++++. ++.|.+ .       .++|++++|++..++++||+..             .             
T Consensus        64 ~~v~vv~Is~d~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~~-------------~-------------  116 (192)
T 2h01_A           64 RNVELLGCSVDSKFT-HLAWKKTPLSQGGIGNIKHTLISDISKSIARSYDVLF-------------N-------------  116 (192)
T ss_dssp             TTEEEEEEESSCHHH-HHHHHTSCGGGTCCCSCSSEEEECTTSHHHHHTTCEE-------------T-------------
T ss_pred             CCCEEEEEEeCCHHH-HHHHHHhHHhhCCccCCCcCeEECCcHHHHHHhCCcC-------------c-------------
Confidence            999999999988764 677774 3       6899999999999999999841             0             


Q ss_pred             CccccCCCCcccceEEEEecCCCcEEEEEecCCCCCCCCHHHHHHHHHhhhhh
Q 015842          334 VEQNFKGEGEIKGGLFIVGRGRSGIAYQFIERNFGDWAPLAEVIEICTQLQDQ  386 (399)
Q Consensus       334 ~~gn~~GD~~qLGGtFVId~gGg~I~yah~d~d~gDrad~eeVLaAl~~l~~~  386 (399)
                             ++..+|.+||||++| +|++.+.+..... .+.++++++++.++..
T Consensus       117 -------~g~~~P~~~liD~~G-~i~~~~~g~~~~~-~~~~~l~~~l~~l~~~  160 (192)
T 2h01_A          117 -------ESVALRAFVLIDKQG-VVQHLLVNNLALG-RSVDEILRLIDALQHH  160 (192)
T ss_dssp             -------TTEECCEEEEECTTS-BEEEEEEGGGSSG-GGHHHHHHHHHHHHHH
T ss_pred             -------CCceeeEEEEEcCCC-EEEEEEeCCCCCC-CCHHHHHHHHHHHhhh
Confidence                   124578999999996 8999998765433 3789999999998743

>1xvq_A Thiol peroxidase; thioredoxin fold, structural genomics, PSI, protein structur initiative, TB structural genomics consortium, TBSGC; 1.75A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 1y25_A

Probab=99.79  E-value=2.1e-18  Score=152.58  Aligned_cols=150  Identities=11%  Similarity=0.081  Sum_probs=121.7

Q ss_pred             CCCCCCCCCCCcccccCccccccchhhhcccccccccCCCceechhhccCCCEEEEeecCCCCcchHHHHHHHHhccchh
Q 015842          180 QAPPVNEKVAPYSAIENISIQKLTPEYKIGMERLVKTKTPPMKALELWRESPAVLLCIRRPGCIMCRAEAHQLYAKKPIF  259 (399)
Q Consensus       180 ~~a~~~~~~apl~~L~~i~l~~l~~~~~~g~~~~v~~~G~~VsLsdL~~~~pvVLvFyRg~gCP~Cr~el~~L~e~~pef  259 (399)
                      ...+.+|+.+|.|.|++.                   +|++++++++ +++++||.|++.+|||.|+.++..|.+++.+ 
T Consensus        15 ~~~l~~G~~~P~f~l~~~-------------------~G~~v~l~~~-~gk~vvl~F~~t~~C~~C~~~~~~l~~l~~~-   73 (175)
T 1xvq_A           15 GELPAVGSPAPAFTLTGG-------------------DLGVISSDQF-RGKSVLLNIFPSVDTPVCATSVRTFDERAAA-   73 (175)
T ss_dssp             SCCCCTTSBCCCCEEECT-------------------TSCEEEGGGG-TTSCEEEEECSCCCSSCCCHHHHHHHHHHHH-
T ss_pred             CCCCCcCCcCCCeEEECC-------------------CCCEEeHHHc-CCCEEEEEEEeCCCCchHHHHHHHHHHHHhh-
Confidence            346788999997776655                   4999999997 7789999999988899999999999998877 


Q ss_pred             hhcCCeEEEEecCChhhHHhhhcC-CCC-CceeEeccchHHHHHhCCCcccccccccccccCHHHHHHHHHHHhcCCccc
Q 015842          260 DALGIQLFAVLHEYIESEVKDFWP-RYW-GGVVVYDQGMEFFKALGGGKLLKDKFLSGFLLNPRAIANYKRARTLGVEQN  337 (399)
Q Consensus       260 ~alGV~LVaIspE~~e~~ik~F~~-~~l-~f~VLsDp~r~lYkaLGl~r~~r~s~lsgfl~~P~v~~~~~rA~~~G~~gn  337 (399)
                        .|+++|+|+.++++. ++.|.+ ..+ +|++++|++..++++||+..           . +.               .
T Consensus        74 --~~v~vv~Is~D~~~~-~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~~-----------~-~~---------------~  123 (175)
T 1xvq_A           74 --SGATVLCVSKDLPFA-QKRFCGAEGTENVMPASAFRDSFGEDYGVTI-----------A-DG---------------P  123 (175)
T ss_dssp             --TTCEEEEEESSCHHH-HTTCC------CEEEEECTTSSHHHHTTCBB-----------C-SS---------------T
T ss_pred             --cCCEEEEEECCCHHH-HHHHHHHcCCCCceEeeCCHHHHHHHhCCcc-----------c-cc---------------c
Confidence              789999999988865 788875 567 89999999999999999852           0 00               0


Q ss_pred             cCCCCcccceEEEEecCCCcEEEEEecCCCCCCCCHHHHHHHHHhh
Q 015842          338 FKGEGEIKGGLFIVGRGRSGIAYQFIERNFGDWAPLAEVIEICTQL  383 (399)
Q Consensus       338 ~~GD~~qLGGtFVId~gGg~I~yah~d~d~gDrad~eeVLaAl~~l  383 (399)
                        ..+...|.+||||++| +|+|.|......+.++++++|+++++-
T Consensus       124 --~~g~~~p~~~lid~~G-~I~~~~~g~~~~~~~~~~~~l~~l~~~  166 (175)
T 1xvq_A          124 --MAGLLARAIVVIGADG-NVAYTELVPEIAQEPNYEAALAALGAT  166 (175)
T ss_dssp             --TTTSBCSEEEEECTTS-BEEEEEECSBTTCCCCHHHHHHHHHHT
T ss_pred             --cCCcccceEEEECCCC-eEEEEEECCCcCCCCCHHHHHHHHHhh
Confidence              1124579999999996 999999988888999999999998853

>1zye_A Thioredoxin-dependent peroxide reductase; catenane, dodecamer, peroxiredoxin, oxidoreductase; 3.30A {Bos taurus} SCOP: c.47.1.10

Probab=99.78  E-value=1.6e-18  Score=160.01  Aligned_cols=156  Identities=15%  Similarity=0.115  Sum_probs=125.6

Q ss_pred             CCCCCCCCCCCcccccCccccccchhhhcccccccccCCCceechhhccCCCEEEEeecCCCCcchHHHHHHHHhccchh
Q 015842          180 QAPPVNEKVAPYSAIENISIQKLTPEYKIGMERLVKTKTPPMKALELWRESPAVLLCIRRPGCIMCRAEAHQLYAKKPIF  259 (399)
Q Consensus       180 ~~a~~~~~~apl~~L~~i~l~~l~~~~~~g~~~~v~~~G~~VsLsdL~~~~pvVLvFyRg~gCP~Cr~el~~L~e~~pef  259 (399)
                      ...+.+|+.+|.|.|++.     .           +.+|++++++++ +++++||.|+|..|||+|+.++..|.++++++
T Consensus        24 ~~~l~~G~~aP~f~l~~~-----~-----------~~~g~~v~l~d~-~Gk~vll~F~pa~~Cp~C~~~~~~l~~l~~~~   86 (220)
T 1zye_A           24 DPAPAVTQHAPYFKGTAV-----V-----------SGEFKEISLDDF-KGKYLVLFFYPLDFTFVCPTEIIAFSDKASEF   86 (220)
T ss_dssp             ---CCTTSBCCCCEEEEE-----C-----------SSSEEEEEGGGG-TTSEEEEEECSCTTCSSSHHHHHHHHHHHHHH
T ss_pred             CCcccCCCCCCCcEEEee-----e-----------CCCCcEEEHHHh-CCCeEEEEEECCCCCCCCHHHHHHHHHHHHHH
Confidence            346788999997776543     1           225899999996 66899999999999999999999999999999


Q ss_pred             hhcCCeEEEEecCChhhHHhhhcC-C-------CCCceeEeccchHHHHHhCCCcccccccccccccCHHHHHHHHHHHh
Q 015842          260 DALGIQLFAVLHEYIESEVKDFWP-R-------YWGGVVVYDQGMEFFKALGGGKLLKDKFLSGFLLNPRAIANYKRART  331 (399)
Q Consensus       260 ~alGV~LVaIspE~~e~~ik~F~~-~-------~l~f~VLsDp~r~lYkaLGl~r~~r~s~lsgfl~~P~v~~~~~rA~~  331 (399)
                      ++.|+++|+|+.++.+. .+.|.+ .       .++|++++|++..++++||+..             +.          
T Consensus        87 ~~~~v~vv~Is~D~~~~-~~~~~~~~~~~~g~~~~~fp~l~D~~~~i~~~ygv~~-------------~~----------  142 (220)
T 1zye_A           87 HDVNCEVVAVSVDSHFS-HLAWINTPRKNGGLGHMNIALLSDLTKQISRDYGVLL-------------EG----------  142 (220)
T ss_dssp             HHTTEEEEEEESSCHHH-HHHHHTSCGGGTCCCSCSSEEEECTTSHHHHHTTCEE-------------TT----------
T ss_pred             HHCCCEEEEEECCCHHH-HHHHHHHHHHhCCCcCCceEEEECCcHHHHHHhCCee-------------cC----------
Confidence            99999999999988764 667764 2       6899999999999999999851             00          


Q ss_pred             cCCccccCCCCcccceEEEEecCCCcEEEEEecCCCCCCCCHHHHHHHHHhhhhhh
Q 015842          332 LGVEQNFKGEGEIKGGLFIVGRGRSGIAYQFIERNFGDWAPLAEVIEICTQLQDQQ  387 (399)
Q Consensus       332 ~G~~gn~~GD~~qLGGtFVId~gGg~I~yah~d~d~gDrad~eeVLaAl~~l~~~~  387 (399)
                               .+..+|.+||||++| +|+|.+.+. .....+.+++++++++++..+
T Consensus       143 ---------~g~~~P~~~liD~~G-~I~~~~~g~-~~~~~~~~ell~~l~~l~~~~  187 (220)
T 1zye_A          143 ---------PGLALRGLFIIDPNG-VIKHLSVND-LPVGRSVEETLRLVKAFQFVE  187 (220)
T ss_dssp             ---------TTEECEEEEEECTTS-BEEEEEEEC-TTCCCCHHHHHHHHHHHHHTT
T ss_pred             ---------CCcccceEEEECCCC-EEEEEEecC-CCCCCCHHHHHHHHHHhhhhc
Confidence                     124579999999996 899999876 445568999999999987543

>1xcc_A 1-Cys peroxiredoxin; unknown function, structural genomics, structural genomics consortium, SGC; 2.30A {Plasmodium yoelii} SCOP: c.47.1.10 PDB: 3tb2_A

Probab=99.78  E-value=1.9e-18  Score=160.55  Aligned_cols=158  Identities=15%  Similarity=0.095  Sum_probs=123.3

Q ss_pred             CCCCCCCCcccccCccccccchhhhcccccccccCCCceechhhccCCCEEEEeecCCCCcchHHHHHHHHhccchhhhc
Q 015842          183 PVNEKVAPYSAIENISIQKLTPEYKIGMERLVKTKTPPMKALELWRESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDAL  262 (399)
Q Consensus       183 ~~~~~~apl~~L~~i~l~~l~~~~~~g~~~~v~~~G~~VsLsdL~~~~pvVLvFyRg~gCP~Cr~el~~L~e~~pef~al  262 (399)
                      +..|+.+|.|.+++..                 .+| +++++++..++++||+||...|||.|+.++.+|++++++|++.
T Consensus         3 l~iG~~aP~F~l~~~~-----------------~~G-~v~l~d~~Gk~~vvL~f~~a~~cp~C~~el~~l~~l~~~f~~~   64 (220)
T 1xcc_A            3 YHLGATFPNFTAKASG-----------------IDG-DFELYKYIENSWAILFSHPNDFTPVCTTELAELGKMHEDFLKL   64 (220)
T ss_dssp             CCTTCBCCCCEECBTT-----------------CSS-CEEHHHHTTTSEEEEECCSCTTCHHHHHHHHHHHHTHHHHHTT
T ss_pred             CCCCCCCCCcEeeccc-----------------CCC-cEeHHHHcCCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHc
Confidence            5688999977665541                 138 8999997554579999999999999999999999999999999


Q ss_pred             CCeEEEEecCChhhHHhhhcC--------CCCCceeEeccchHHHHHhCCCcccccccccccccCHHHHHHHHHHHhcCC
Q 015842          263 GIQLFAVLHEYIESEVKDFWP--------RYWGGVVVYDQGMEFFKALGGGKLLKDKFLSGFLLNPRAIANYKRARTLGV  334 (399)
Q Consensus       263 GV~LVaIspE~~e~~ik~F~~--------~~l~f~VLsDp~r~lYkaLGl~r~~r~s~lsgfl~~P~v~~~~~rA~~~G~  334 (399)
                      |+++|+|+.++.+. ++.|.+        ..++|++++|++++++++||+..             +.           ..
T Consensus        65 ~v~vi~vS~D~~~~-~~~~~~~i~~~~~~~~~~fpil~D~~~~va~~ygv~~-------------~~-----------~~  119 (220)
T 1xcc_A           65 NCKLIGFSCNSKES-HDKWIEDIKYYGKLNKWEIPIVCDESRELANKLKIMD-------------EQ-----------EK  119 (220)
T ss_dssp             TEEEEEEESSCHHH-HHHHHHHHHHHHTCSCCCCCEEECTTSHHHHHHTCEE-------------EE-----------EE
T ss_pred             CCEEEEEeCCCHHH-HHHHHHHHHHHhcCCCCcceeEECchhHHHHHhCCCC-------------cc-----------cc
Confidence            99999999987754 455543        57899999999999999999841             00           00


Q ss_pred             ccccCCCCcccceEEEEecCCCcEEEEEecCCCCCCCCHHHHHHHHHhhhhhh
Q 015842          335 EQNFKGEGEIKGGLFIVGRGRSGIAYQFIERNFGDWAPLAEVIEICTQLQDQQ  387 (399)
Q Consensus       335 ~gn~~GD~~qLGGtFVId~gGg~I~yah~d~d~gDrad~eeVLaAl~~l~~~~  387 (399)
                      .  ..|.....|++||||++| +|++.+.......+ +.++|++++++++...
T Consensus       120 ~--~~g~~~~~p~~flID~~G-~I~~~~~~~~~~g~-~~~ell~~i~~lq~~~  168 (220)
T 1xcc_A          120 D--ITGLPLTCRCLFFISPEK-KIKATVLYPATTGR-NAHEILRVLKSLQLTY  168 (220)
T ss_dssp             C--TTSCEEECEEEEEECTTS-BEEEEEEECTTBCC-CHHHHHHHHHHHHHHH
T ss_pred             c--CCCCCcccceEEEECCCC-EEEEEEecCCCCCC-CHHHHHHHHHHHHhhh
Confidence            0  012124579999999996 99999987644333 8899999999987554

>3ztl_A Thioredoxin peroxidase; oxidoreductase, reductase, schistosomiasis, thioredoxin fold; 3.00A {Schistosoma mansoni} PDB: 3zvj_A 3zvj_D

Probab=99.78  E-value=2e-18  Score=159.31  Aligned_cols=155  Identities=15%  Similarity=0.085  Sum_probs=124.9

Q ss_pred             CCCCCCCCCCcccccCccccccchhhhcccccccccCCCceechhhccCCCEEEEeecCCCCcchHHHHHHHHhccchhh
Q 015842          181 APPVNEKVAPYSAIENISIQKLTPEYKIGMERLVKTKTPPMKALELWRESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFD  260 (399)
Q Consensus       181 ~a~~~~~~apl~~L~~i~l~~l~~~~~~g~~~~v~~~G~~VsLsdL~~~~pvVLvFyRg~gCP~Cr~el~~L~e~~pef~  260 (399)
                      ..+++|+.+|.|.|+++.                +.+|++|+++++ +++++||.|++..||+.|+.++..|++++.+++
T Consensus        38 ~~l~~G~~aP~f~l~~~~----------------d~~G~~v~l~~~-~Gk~vll~F~a~~wC~~C~~~~p~l~~l~~~~~  100 (222)
T 3ztl_A           38 MVLLPNRPAPEFKGQAVI----------------NGEFKEICLKDY-RGKYVVLFFYPADFTFVCPTEIIAFSDQVEEFN  100 (222)
T ss_dssp             --CCSSEECCCCEEEEEE----------------TTEEEEEEGGGG-TTSEEEEEECSCSSCSHHHHHHHHHHHTHHHHH
T ss_pred             ccccCCCCCCCeEEeccc----------------CCCCcEEeHHHh-CCCeEEEEEECCCCCCchHHHHHHHHHHHHHHH
Confidence            357889999976665440                124799999997 778999999999999999999999999999999


Q ss_pred             hcCCeEEEEecCChhhHHhhhcC-C-------CCCceeEeccchHHHHHhCCCcccccccccccccCHHHHHHHHHHHhc
Q 015842          261 ALGIQLFAVLHEYIESEVKDFWP-R-------YWGGVVVYDQGMEFFKALGGGKLLKDKFLSGFLLNPRAIANYKRARTL  332 (399)
Q Consensus       261 alGV~LVaIspE~~e~~ik~F~~-~-------~l~f~VLsDp~r~lYkaLGl~r~~r~s~lsgfl~~P~v~~~~~rA~~~  332 (399)
                      +.|+++|+|+.++.+. .+.|.+ .       .++|++++|++..++++||+..           . .            
T Consensus       101 ~~~v~vv~Is~D~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~ygv~~-----------~-~------------  155 (222)
T 3ztl_A          101 SRNCQVIACSTDSQYS-HLAWDNLDRKSGGLGHMKIPLLADRKQEISKAYGVFD-----------E-E------------  155 (222)
T ss_dssp             TTTEEEEEEESSCHHH-HHHHHHSCGGGTSCCSCSSCEEECSSSHHHHHTTCBC-----------T-T------------
T ss_pred             HCCCEEEEEECCCHHH-HHHHHHHhhhhccccccceeEEeCCchHHHHHcCCee-----------c-C------------
Confidence            9999999999988654 556653 2       7899999999999999999841           0 0            


Q ss_pred             CCccccCCCCcccceEEEEecCCCcEEEEEecCCCCCCCCHHHHHHHHHhhhhhh
Q 015842          333 GVEQNFKGEGEIKGGLFIVGRGRSGIAYQFIERNFGDWAPLAEVIEICTQLQDQQ  387 (399)
Q Consensus       333 G~~gn~~GD~~qLGGtFVId~gGg~I~yah~d~d~gDrad~eeVLaAl~~l~~~~  387 (399)
                              .+...|.+||||++| +|+|.|......+ ..+++++++++.++..+
T Consensus       156 --------~g~~~P~~~lID~~G-~I~~~~~g~~~~~-~~~~~il~~l~~l~~~~  200 (222)
T 3ztl_A          156 --------DGNAFRGLFIIDPNG-ILRQITINDKPVG-RSVDETLRLLDAFQFVE  200 (222)
T ss_dssp             --------TSSBCEEEEEECTTS-EEEEEEEECTTBC-CCHHHHHHHHHHHHHHH
T ss_pred             --------CCCccceEEEECCCC-eEEEEEecCCCCC-CCHHHHHHHHHHhhccc
Confidence                    123469999999996 9999999875543 35899999999887553

>1uul_A Tryparedoxin peroxidase homologue; peroxiredoxin, oxidoreductase; 2.8A {Trypanosoma cruzi} SCOP: c.47.1.10

Probab=99.77  E-value=4.4e-18  Score=153.68  Aligned_cols=153  Identities=14%  Similarity=0.099  Sum_probs=124.7

Q ss_pred             CCCCCCCCCCcccccCccccccchhhhcccccccccCC--CceechhhccCCCEEEEeecCCCCcchHHHHHHHHhccch
Q 015842          181 APPVNEKVAPYSAIENISIQKLTPEYKIGMERLVKTKT--PPMKALELWRESPAVLLCIRRPGCIMCRAEAHQLYAKKPI  258 (399)
Q Consensus       181 ~a~~~~~~apl~~L~~i~l~~l~~~~~~g~~~~v~~~G--~~VsLsdL~~~~pvVLvFyRg~gCP~Cr~el~~L~e~~pe  258 (399)
                      ..+.+|+.+|.|.|++..                 .+|  ++++++++ +++++||.|++..|||.|+.++..|.+++.+
T Consensus         4 ~~~~~G~~aP~f~l~~~~-----------------~~g~~~~v~l~~~-~gk~vvl~F~~~~~C~~C~~~~~~l~~l~~~   65 (202)
T 1uul_A            4 GEAEDLHPAPDFNETALM-----------------PNGTFKKVALTSY-KGKWLVLFFYPMDFTFVCPTEICQFSDRVKE   65 (202)
T ss_dssp             CCCCTTSBCCCCEEEEEC-----------------TTSCEEEEEGGGG-TTSEEEEEECSCTTCSHHHHHHHHHHHTHHH
T ss_pred             ccccCCCcCCCcEeeeee-----------------cCCCccEEEHHHh-CCCeEEEEEECCCCCCcCHHHHHHHHHHHHH
Confidence            356789999977766541                 025  89999997 6679999999999999999999999999999


Q ss_pred             hhhcCCeEEEEecCChhhHHhhhcC-C-------CCCceeEeccchHHHHHhCCCcccccccccccccCHHHHHHHHHHH
Q 015842          259 FDALGIQLFAVLHEYIESEVKDFWP-R-------YWGGVVVYDQGMEFFKALGGGKLLKDKFLSGFLLNPRAIANYKRAR  330 (399)
Q Consensus       259 f~alGV~LVaIspE~~e~~ik~F~~-~-------~l~f~VLsDp~r~lYkaLGl~r~~r~s~lsgfl~~P~v~~~~~rA~  330 (399)
                      +++.|+++|+|+.++.+. ++.|.+ .       .++|++++|++..++++||+..           . +          
T Consensus        66 ~~~~~v~vi~Is~D~~~~-~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~~ygv~~-----------~-~----------  122 (202)
T 1uul_A           66 FSDIGCEVLACSMDSEYS-HLAWTSIERKRGGLGQMNIPILADKTKCIMKSYGVLK-----------E-E----------  122 (202)
T ss_dssp             HHTTTEEEEEEESSCHHH-HHHHHHSCGGGTCCCSCSSCEEECTTCHHHHHHTCEE-----------T-T----------
T ss_pred             HHHCCCEEEEEeCCCHHH-HHHHHHHHHhhCCCCCCceeEEECCchHHHHHcCCcc-----------C-C----------
Confidence            999999999999988764 677764 3       6899999999999999999851           0 0          


Q ss_pred             hcCCccccCCCCcccceEEEEecCCCcEEEEEecCCCCCCCCHHHHHHHHHhhhhh
Q 015842          331 TLGVEQNFKGEGEIKGGLFIVGRGRSGIAYQFIERNFGDWAPLAEVIEICTQLQDQ  386 (399)
Q Consensus       331 ~~G~~gn~~GD~~qLGGtFVId~gGg~I~yah~d~d~gDrad~eeVLaAl~~l~~~  386 (399)
                                ++...|++||||++| +|++.+.+... ...+.++|+++++.++..
T Consensus       123 ----------~g~~~P~~~lid~~G-~i~~~~~g~~~-~~~~~~ell~~l~~l~~~  166 (202)
T 1uul_A          123 ----------DGVAYRGLFIIDPKQ-NLRQITVNDLP-VGRDVDEALRLVKAFQFV  166 (202)
T ss_dssp             ----------TTEECEEEEEECTTS-BEEEEEEECTT-BCCCHHHHHHHHHHHHHH
T ss_pred             ----------CCceeeEEEEECCCC-EEEEEEeCCCC-CCCCHHHHHHHHHHhhhh
Confidence                      124579999999996 89999987643 335889999999998743

>2bmx_A Alkyl hydroperoxidase C; peroxiredoxin, antioxidant defense system, oxidoreductase, structural proteomics in EURO spine; 2.4A {Mycobacterium tuberculosis} SCOP: c.47.1.10

Probab=99.77  E-value=3.1e-18  Score=153.61  Aligned_cols=158  Identities=14%  Similarity=0.097  Sum_probs=125.7

Q ss_pred             CCCCCCCCCcccccCcc---ccccchhhhcccccccccCC--CceechhhccCCCEEEEeecCCCCcchHHHHHHHHhcc
Q 015842          182 PPVNEKVAPYSAIENIS---IQKLTPEYKIGMERLVKTKT--PPMKALELWRESPAVLLCIRRPGCIMCRAEAHQLYAKK  256 (399)
Q Consensus       182 a~~~~~~apl~~L~~i~---l~~l~~~~~~g~~~~v~~~G--~~VsLsdL~~~~pvVLvFyRg~gCP~Cr~el~~L~e~~  256 (399)
                      .+.+|+.+|.|.|++..   ..+++..         ..+|  ++++++++ +++++||.|+|..|||.|+.++..|.+++
T Consensus         3 ~l~~G~~~P~f~l~~~~~~~~~~~~~~---------~~~G~~~~v~l~~~-~gk~vvl~F~~a~~C~~C~~~~~~l~~l~   72 (195)
T 2bmx_A            3 LLTIGDQFPAYQLTALIGGDLSKVDAK---------QPGDYFTTITSDEH-PGKWRVVFFWPKDFTFVCPTEIAAFSKLN   72 (195)
T ss_dssp             BCCTTCBCCCCEEEEECSSCGGGSCCS---------SGGGGEEEEETTSS-TTCEEEEEECSCTTSCCCHHHHHHHHHTH
T ss_pred             cCCCCCcCCCcCccccccccccccccc---------ccCCCccEeeHHHh-CCCcEEEEEEcCCCCCCcHHHHHHHHHHH
Confidence            36789999988877663   1112111         1126  89999997 67799999999999999999999999999


Q ss_pred             chhhhcCCeEEEEecCChhhHHhhhcC-C----CCCceeEeccchHHHHHhCCCcccccccccccccCHHHHHHHHHHHh
Q 015842          257 PIFDALGIQLFAVLHEYIESEVKDFWP-R----YWGGVVVYDQGMEFFKALGGGKLLKDKFLSGFLLNPRAIANYKRART  331 (399)
Q Consensus       257 pef~alGV~LVaIspE~~e~~ik~F~~-~----~l~f~VLsDp~r~lYkaLGl~r~~r~s~lsgfl~~P~v~~~~~rA~~  331 (399)
                      .++.+.|+++|+|+.+.++. ++.|.+ .    .++|++++|++..++++||+..             .           
T Consensus        73 ~~~~~~~v~vv~Vs~d~~~~-~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~-------------~-----------  127 (195)
T 2bmx_A           73 DEFEDRDAQILGVSIDSEFA-HFQWRAQHNDLKTLPFPMLSDIKRELSQAAGVLN-------------A-----------  127 (195)
T ss_dssp             HHHHTTTEEEEEEESSCHHH-HHHHHHHCTTGGGCCSCEEECTTSHHHHHHTCBC-------------T-----------
T ss_pred             HHHHHCCCEEEEEECCCHHH-HHHHHHHhccccCCceeEEeCCchHHHHHhCCcc-------------c-----------
Confidence            99999999999999988664 777775 4    6899999999999999999841             0           


Q ss_pred             cCCccccCCCCcccceEEEEecCCCcEEEEEecCCCCCCCCHHHHHHHHHhhhh
Q 015842          332 LGVEQNFKGEGEIKGGLFIVGRGRSGIAYQFIERNFGDWAPLAEVIEICTQLQD  385 (399)
Q Consensus       332 ~G~~gn~~GD~~qLGGtFVId~gGg~I~yah~d~d~gDrad~eeVLaAl~~l~~  385 (399)
                               ++...|.+||||++| +|++.|......+ .++++|+++++.+..
T Consensus       128 ---------~g~~~P~~~lid~~G-~i~~~~~g~~~~~-~~~~~l~~~l~~l~~  170 (195)
T 2bmx_A          128 ---------DGVADRVTFIVDPNN-EIQFVSATAGSVG-RNVDEVLRVLDALQS  170 (195)
T ss_dssp             ---------TSSBCEEEEEECTTS-BEEEEEEECTTCC-CCHHHHHHHHHHHHC
T ss_pred             ---------CCCccceEEEEcCCC-eEEEEEecCCCCC-CCHHHHHHHHHHHhh
Confidence                     013468999999996 8999998875433 378999999998864

>2a4v_A Peroxiredoxin DOT5; yeast nuclear thiol peroxidase, atypical 2-Cys peroxiredoxin, oxidoreductase; 1.80A {Saccharomyces cerevisiae} SCOP: c.47.1.10

Probab=99.76  E-value=1.8e-18  Score=149.55  Aligned_cols=145  Identities=13%  Similarity=0.143  Sum_probs=115.0

Q ss_pred             CCCCCCCCCcccccCccccccchhhhcccccccccCCCceechhhccCC-CEEEEeecCCCCcchHHHHHHHHhccchhh
Q 015842          182 PPVNEKVAPYSAIENISIQKLTPEYKIGMERLVKTKTPPMKALELWRES-PAVLLCIRRPGCIMCRAEAHQLYAKKPIFD  260 (399)
Q Consensus       182 a~~~~~~apl~~L~~i~l~~l~~~~~~g~~~~v~~~G~~VsLsdL~~~~-pvVLvFyRg~gCP~Cr~el~~L~e~~pef~  260 (399)
                      .+.+|+.+|.|.|++.                   +|++++++++..++ ++||.||+..|||.|+.++..|.+.+.+++
T Consensus         6 ~~~~G~~~P~f~l~~~-------------------~G~~v~l~~~~gk~~~vvl~f~~~~~c~~C~~~~~~l~~~~~~~~   66 (159)
T 2a4v_A            6 ELEIGDPIPDLSLLNE-------------------DNDSISLKKITENNRVVVFFVYPRASTPGSTRQASGFRDNYQELK   66 (159)
T ss_dssp             CCCTTCBCCSCEEECT-------------------TSCEEEHHHHHHHCSEEEEEECSSSSSHHHHHHHHHHHHHHHHHT
T ss_pred             cCCCCCCCCCeEEECC-------------------CCCEEeHHHHhCCCCeEEEEEcCCCCCCCHHHHHHHHHHHHHHHH
Confidence            5678999997777665                   49999999987655 577778899999999999999999999999


Q ss_pred             hcCCeEEEEecCChhhHHhhhcC-CCCCceeEeccchHHHHHhCCCcccccccccccccCHHHHHHHHHHHhcCCccccC
Q 015842          261 ALGIQLFAVLHEYIESEVKDFWP-RYWGGVVVYDQGMEFFKALGGGKLLKDKFLSGFLLNPRAIANYKRARTLGVEQNFK  339 (399)
Q Consensus       261 alGV~LVaIspE~~e~~ik~F~~-~~l~f~VLsDp~r~lYkaLGl~r~~r~s~lsgfl~~P~v~~~~~rA~~~G~~gn~~  339 (399)
                      +.| ++|+|+.++++. ++.|.+ ..++|++++|++..++++||+..            .|                 ..
T Consensus        67 ~~~-~vv~is~d~~~~-~~~~~~~~~~~~~~l~D~~~~~~~~~gv~~------------~p-----------------~~  115 (159)
T 2a4v_A           67 EYA-AVFGLSADSVTS-QKKFQSKQNLPYHLLSDPKREFIGLLGAKK------------TP-----------------LS  115 (159)
T ss_dssp             TTC-EEEEEESCCHHH-HHHHHHHHTCSSEEEECTTCHHHHHHTCBS------------SS-----------------SS
T ss_pred             hCC-cEEEEeCCCHHH-HHHHHHHhCCCceEEECCccHHHHHhCCcc------------cc-----------------cC
Confidence            999 999999998765 788875 67899999999999999999852            12                 01


Q ss_pred             CCCcccceEEEEecCCCcEEEEEecCCCCCCCCHHHHHHHHHhh
Q 015842          340 GEGEIKGGLFIVGRGRSGIAYQFIERNFGDWAPLAEVIEICTQL  383 (399)
Q Consensus       340 GD~~qLGGtFVId~gGg~I~yah~d~d~gDrad~eeVLaAl~~l  383 (399)
                      |   ..|.+||| ++| +|++.|.+.....  +.+++++.+..+
T Consensus       116 g---~~~~~~li-~~G-~i~~~~~g~~~~~--~~~~~~~~l~~~  152 (159)
T 2a4v_A          116 G---SIRSHFIF-VDG-KLKFKRVKISPEV--SVNDAKKEVLEV  152 (159)
T ss_dssp             C---BCCEEEEE-ETT-EEEEEEESCCHHH--HHHHHHHHHHHH
T ss_pred             C---ccceEEEE-cCC-EEEEEEccCCccc--cHHHHHHHHHHH
Confidence            1   36799999 996 8999998653332  345555555444

>1zof_A Alkyl hydroperoxide-reductase; decamer, toroide-shaped complex, oxidoreductase; 2.95A {Helicobacter pylori} SCOP: c.47.1.10

Probab=99.74  E-value=2.2e-17  Score=148.12  Aligned_cols=151  Identities=11%  Similarity=0.051  Sum_probs=123.3

Q ss_pred             CCCCCCCcccccCccccccchhhhcccccccccCCC---ceechhhccCCCEEEEeecCCCCcchHHHHHHHHhccchhh
Q 015842          184 VNEKVAPYSAIENISIQKLTPEYKIGMERLVKTKTP---PMKALELWRESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFD  260 (399)
Q Consensus       184 ~~~~~apl~~L~~i~l~~l~~~~~~g~~~~v~~~G~---~VsLsdL~~~~pvVLvFyRg~gCP~Cr~el~~L~e~~pef~  260 (399)
                      ++|+.+|.|.|++..                 .+|+   +++++++++++++||.|+|..|||.|+.++..|.+++.++.
T Consensus         2 ~~G~~~P~f~l~~~~-----------------~~G~~~~~v~l~~~~~gk~vvl~F~~a~~C~~C~~~~~~l~~l~~~~~   64 (198)
T 1zof_A            2 VVTKLAPDFKAPAVL-----------------GNNEVDEHFELSKNLGKNGVILFFWPKDFTFVCPTEIIAFDKRVKDFH   64 (198)
T ss_dssp             CTTSBCCCCEEEEEC-----------------TTSCEEEEEETTTSCCSSEEEEEECSCTTCSSCCTHHHHHHHTHHHHH
T ss_pred             CCCCcCCceEeeccc-----------------CCCcccceEEHHHHhCCCcEEEEEECCCCCCchHHHHHHHHHHHHHHH
Confidence            578889966665440                 1388   99999986888999999999999999999999999999999


Q ss_pred             hcCCeEEEEecCChhhHHhhhcC--------CCCCceeEeccchHHHHHhCCCcccccccccccccCHHHHHHHHHHHhc
Q 015842          261 ALGIQLFAVLHEYIESEVKDFWP--------RYWGGVVVYDQGMEFFKALGGGKLLKDKFLSGFLLNPRAIANYKRARTL  332 (399)
Q Consensus       261 alGV~LVaIspE~~e~~ik~F~~--------~~l~f~VLsDp~r~lYkaLGl~r~~r~s~lsgfl~~P~v~~~~~rA~~~  332 (399)
                      +.|+++|+|+.+.++. ++.|.+        ..++|++++|++..++++||+..           . .            
T Consensus        65 ~~~v~vv~Is~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~-----------~-~------------  119 (198)
T 1zof_A           65 EKGFNVIGVSIDSEQV-HFAWKNTPVEKGGIGQVSFPMVADITKSISRDYDVLF-----------E-E------------  119 (198)
T ss_dssp             HTTEEEEEEESSCHHH-HHHHHTSCGGGTCCCCCSSCEEECTTSHHHHHTTCEE-----------T-T------------
T ss_pred             HcCCEEEEEECCCHHH-HHHHHHhhhhcccccCceeEEEECCchHHHHHhCCcc-----------c-C------------
Confidence            9999999999988654 677764        46889999999999999999841           0 0            


Q ss_pred             CCccccCCCCcccceEEEEecCCCcEEEEEecCCCCCCCCHHHHHHHHHhhhhhh
Q 015842          333 GVEQNFKGEGEIKGGLFIVGRGRSGIAYQFIERNFGDWAPLAEVIEICTQLQDQQ  387 (399)
Q Consensus       333 G~~gn~~GD~~qLGGtFVId~gGg~I~yah~d~d~gDrad~eeVLaAl~~l~~~~  387 (399)
                               +...|.+||||++| +|++.+.+. .....+.++|+++++.++..+
T Consensus       120 ---------g~~~P~~~lid~~G-~i~~~~~g~-~~~~~~~~~l~~~l~~l~~~~  163 (198)
T 1zof_A          120 ---------AIALRGAFLIDKNM-KVRHAVIND-LPLGRNADEMLRMVDALLHFE  163 (198)
T ss_dssp             ---------TEECEEEEEEETTT-EEEEEEEES-SSCCCHHHHHHHHHHHHHHHH
T ss_pred             ---------CcccceEEEECCCC-EEEEEEecC-CCCCCCHHHHHHHHHHHHHhh
Confidence                     13478999999996 899999875 334457899999999987544

>3a2v_A Probable peroxiredoxin; thioredoxin peroxidase, hydrogen peroxide, antioxidant, oxidoreductase, redox-active center; 1.65A {Aeropyrum pernix} PDB: 1x0r_A 2zct_A 2nvl_A 2e2g_A 2cv4_A* 3a5w_A 2e2m_A 3a2x_A 3a2w_A

Probab=99.73  E-value=3.4e-17  Score=156.19  Aligned_cols=150  Identities=15%  Similarity=0.066  Sum_probs=121.0

Q ss_pred             CCCCCCCCcccccCccccccchhhhcccccccccCCCceec-hhhc-cCCCEEEEeecCCCCcchHHHHHHHHhccchhh
Q 015842          183 PVNEKVAPYSAIENISIQKLTPEYKIGMERLVKTKTPPMKA-LELW-RESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFD  260 (399)
Q Consensus       183 ~~~~~~apl~~L~~i~l~~l~~~~~~g~~~~v~~~G~~VsL-sdL~-~~~pvVLvFyRg~gCP~Cr~el~~L~e~~pef~  260 (399)
                      +..|+.+|.|.+++.                   +| ++++ ++++ +++++||+||...|||.|..++.+|++++++|+
T Consensus         5 ~~iG~~aPdF~l~~~-------------------~G-~v~l~~d~l~~GK~vVL~~fpa~~CpvC~tEl~~l~~l~~ef~   64 (249)
T 3a2v_A            5 PLIGERFPEMEVTTD-------------------HG-VIKLPDHYVSQGKWFVLFSHPADFTPVCTTEFVSFARRYEDFQ   64 (249)
T ss_dssp             CCTTSBCCCEEEEET-------------------TE-EEEETHHHHTTTCEEEEECCSCTTCHHHHHHHHHHHHTHHHHH
T ss_pred             CCCCCCCCCeEEEcC-------------------CC-CEecHHHHhhCCCEEEEEEEcCCCCcChHHHHHHHHHHHHHHH
Confidence            468899997776654                   37 7999 9976 666788999999999999999999999999999


Q ss_pred             hcCCeEEEEecCChhhHHhhhcC-------CCCCceeEeccchHHHHHhCCCcccccccccccccCHHHHHHHHHHHhcC
Q 015842          261 ALGIQLFAVLHEYIESEVKDFWP-------RYWGGVVVYDQGMEFFKALGGGKLLKDKFLSGFLLNPRAIANYKRARTLG  333 (399)
Q Consensus       261 alGV~LVaIspE~~e~~ik~F~~-------~~l~f~VLsDp~r~lYkaLGl~r~~r~s~lsgfl~~P~v~~~~~rA~~~G  333 (399)
                      +.|+++|+|+.++... ...|.+       ..++|++++|+++.++++||+..             +.          . 
T Consensus        65 ~~gv~VI~VS~Ds~~~-~~~w~~~~~~~~~~~i~fPil~D~~~~ia~~ygv~~-------------~~----------~-  119 (249)
T 3a2v_A           65 RLGVDLIGLSVDSVFS-HIKWKEWIERHIGVRIPFPIIADPQGTVARRLGLLH-------------AE----------S-  119 (249)
T ss_dssp             HTTEEEEEEESSCHHH-HHHHHHHHHHHTCCCCCSCEEECTTSHHHHHHTCCC-------------TT----------C-
T ss_pred             hCCcEEEEEECCCHHH-HHHHHHHHHHhcCCCCceeEEECCchHHHHHhCCcc-------------cc----------C-
Confidence            9999999999988754 444442       37899999999999999999841             11          0 


Q ss_pred             CccccCCCCcccceEEEEecCCCcEEEEEecCCCCCCCCHHHHHHHHHhhhhh
Q 015842          334 VEQNFKGEGEIKGGLFIVGRGRSGIAYQFIERNFGDWAPLAEVIEICTQLQDQ  386 (399)
Q Consensus       334 ~~gn~~GD~~qLGGtFVId~gGg~I~yah~d~d~gDrad~eeVLaAl~~l~~~  386 (399)
                            | ...+|++||||++| +|++.+.+..... .+.++|++++++++..
T Consensus       120 ------g-~~~~p~~fIID~dG-~I~~~~~~~~~~g-r~~~Ellr~I~alq~~  163 (249)
T 3a2v_A          120 ------A-THTVRGVFIVDARG-VIRTMLYYPMELG-RLVDEILRIVKALKLG  163 (249)
T ss_dssp             ------S-SSCCEEEEEECTTS-BEEEEEEECTTBC-CCHHHHHHHHHHHHHH
T ss_pred             ------C-CcccceEEEECCCC-eEEEEEecCCccc-chhHHHHHHHHHHHhc
Confidence                  1 12479999999996 8999998765433 3789999999998753

>3kcm_A Thioredoxin family protein; SGX, thioredoxin protein, PSI, structural genomics, protein initiative; 2.45A {Geobacter metallireducens gs-15}

Probab=99.69  E-value=1.4e-16  Score=134.96  Aligned_cols=141  Identities=16%  Similarity=0.173  Sum_probs=110.6

Q ss_pred             CCCCCCCcccccCccccccchhhhcccccccccCCCceechhhccCCCEEEEeecCCCCcchHHHHHHHHhccchhhhcC
Q 015842          184 VNEKVAPYSAIENISIQKLTPEYKIGMERLVKTKTPPMKALELWRESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALG  263 (399)
Q Consensus       184 ~~~~~apl~~L~~i~l~~l~~~~~~g~~~~v~~~G~~VsLsdL~~~~pvVLvFyRg~gCP~Cr~el~~L~e~~pef~alG  263 (399)
                      .+|+.+|.+.+.+.                   +|++++++++ +++++||.|+ ..|||.|+.++..|.++..++...+
T Consensus         3 ~~G~~~p~~~l~~~-------------------~g~~~~l~~~-~gk~vll~f~-~~~C~~C~~~~~~l~~~~~~~~~~~   61 (154)
T 3kcm_A            3 LEENPAPDFTLNTL-------------------NGEVVKLSDL-KGQVVIVNFW-ATWCPPCREEIPSMMRLNAAMAGKP   61 (154)
T ss_dssp             CTTSBCCCCEEECT-------------------TSCEEEGGGG-TTSEEEEEEE-CTTCHHHHHHHHHHHHHHHHTTTSS
T ss_pred             CCCCCCCCeEEEcC-------------------CCCEEehhhc-CCCEEEEEEE-CCCCHHHHHHHHHHHHHHHHhccCC
Confidence            67888996666555                   4999999997 6677777777 8999999999999999999999999


Q ss_pred             CeEEEEecCCh-hhHHhhhcC-CCCCceeEeccchHHHHHhCCCcccccccccccccCHHHHHHHHHHHhcCCccccCCC
Q 015842          264 IQLFAVLHEYI-ESEVKDFWP-RYWGGVVVYDQGMEFFKALGGGKLLKDKFLSGFLLNPRAIANYKRARTLGVEQNFKGE  341 (399)
Q Consensus       264 V~LVaIspE~~-e~~ik~F~~-~~l~f~VLsDp~r~lYkaLGl~r~~r~s~lsgfl~~P~v~~~~~rA~~~G~~gn~~GD  341 (399)
                      +.+|+|+.+.. ...++.|.. ..++|+++.|++..+++.||+.                                    
T Consensus        62 ~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~------------------------------------  105 (154)
T 3kcm_A           62 FRMLCVSIDEGGKVAVEEFFRKTGFTLPVLLDADKRVGKLYGTT------------------------------------  105 (154)
T ss_dssp             EEEEEEECCTTHHHHHHHHHHHHCCCCCEEECTTCHHHHHHTCC------------------------------------
T ss_pred             eEEEEEEcCCcchHHHHHHHHHcCCCeeEEecCchHHHHHhCCC------------------------------------
Confidence            99999998764 334677775 6789999999999999988874                                    


Q ss_pred             CcccceEEEEecCCCcEEEEEecCCCCCCCCHHHHHHHHHhhhhhh
Q 015842          342 GEIKGGLFIVGRGRSGIAYQFIERNFGDWAPLAEVIEICTQLQDQQ  387 (399)
Q Consensus       342 ~~qLGGtFVId~gGg~I~yah~d~d~gDrad~eeVLaAl~~l~~~~  387 (399)
                        ..|.+||||++| +|++.+.+....+.   +++.+.++++...+
T Consensus       106 --~~P~~~lid~~G-~i~~~~~g~~~~~~---~~l~~~l~~l~~~~  145 (154)
T 3kcm_A          106 --GVPETFVIDRHG-VILKKVVGAMEWDH---PEVIAFLNNELSKA  145 (154)
T ss_dssp             --SBCEEEEECTTS-BEEEEEESCCCTTS---HHHHHHHHTC----
T ss_pred             --CCCeEEEECCCC-cEEEEEcCCCcccc---HHHHHHHHHHHHHh
Confidence              147899999996 89999988755544   55555665554433

>2f9s_A Thiol-disulfide oxidoreductase RESA; thioredoxin-like protein; HET: MSE; 1.40A {Bacillus subtilis} SCOP: c.47.1.10 PDB: 1st9_A 1su9_A 2h1d_A 2h1b_A 2h1a_A 2h19_A 2h1g_A 3c71_A 3c73_A

Probab=99.67  E-value=4.5e-16  Score=131.99  Aligned_cols=144  Identities=14%  Similarity=0.125  Sum_probs=112.0

Q ss_pred             CCCCCCcccccCccccccchhhhcccccccccCCCceechhhccCCCEEEEeecCCCCcchHHHHHHHHhccchhhhcCC
Q 015842          185 NEKVAPYSAIENISIQKLTPEYKIGMERLVKTKTPPMKALELWRESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALGI  264 (399)
Q Consensus       185 ~~~~apl~~L~~i~l~~l~~~~~~g~~~~v~~~G~~VsLsdL~~~~pvVLvFyRg~gCP~Cr~el~~L~e~~pef~alGV  264 (399)
                      +|+.+|.+.|.+.                   +|++++++++ +++++||.|+ ..|||.|+.++..|.+...++...|+
T Consensus         2 ~G~~~p~~~l~~~-------------------~g~~~~l~~~-~gk~vlv~F~-~~~C~~C~~~~~~l~~~~~~~~~~~v   60 (151)
T 2f9s_A            2 EGSDAPNFVLEDT-------------------NGKRIELSDL-KGKGVFLNFW-GTWCEPCKKEFPYMANQYKHFKSQGV   60 (151)
T ss_dssp             CCEECCCCEEECT-------------------TCCEEEGGGG-TTSEEEEEEE-CTTCHHHHHHHHHHHHHHHHHGGGTE
T ss_pred             CCCcCCcceeEcC-------------------CCCEEEHHHc-CCCEEEEEEE-CCCCHHHHHHHHHHHHHHHHhccCCe
Confidence            5777886655554                   4999999997 6677777777 89999999999999999999988899


Q ss_pred             eEEEEecCChhhHHhhhcC-CCCCceeEeccchHHHHHhCCCcccccccccccccCHHHHHHHHHHHhcCCccccCCCCc
Q 015842          265 QLFAVLHEYIESEVKDFWP-RYWGGVVVYDQGMEFFKALGGGKLLKDKFLSGFLLNPRAIANYKRARTLGVEQNFKGEGE  343 (399)
Q Consensus       265 ~LVaIspE~~e~~ik~F~~-~~l~f~VLsDp~r~lYkaLGl~r~~r~s~lsgfl~~P~v~~~~~rA~~~G~~gn~~GD~~  343 (399)
                      ++|+|+.+.....++.|.+ ..++|+++.|++..+++.||+.                                      
T Consensus        61 ~vv~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~--------------------------------------  102 (151)
T 2f9s_A           61 EIVAVNVGESKIAVHNFMKSYGVNFPVVLDTDRQVLDAYDVS--------------------------------------  102 (151)
T ss_dssp             EEEEEEESCCHHHHHHHHHHHTCCSCEEEETTSHHHHHTTCC--------------------------------------
T ss_pred             EEEEEECCCCHHHHHHHHHHcCCCceEEECCchHHHHhcCCC--------------------------------------
Confidence            9999997654444777775 6789999999999999988773                                      


Q ss_pred             ccceEEEEecCCCcEEEEEecCCCCCCCCHHHHHHHHHhhhhhhcccccc
Q 015842          344 IKGGLFIVGRGRSGIAYQFIERNFGDWAPLAEVIEICTQLQDQQRDQSET  393 (399)
Q Consensus       344 qLGGtFVId~gGg~I~yah~d~d~gDrad~eeVLaAl~~l~~~~~~~~~~  393 (399)
                      ..|.+||||++| +|++.+.+.     .+.+++.+.++.+.+.....++.
T Consensus       103 ~~P~~~lid~~G-~i~~~~~G~-----~~~~~l~~~l~~ll~~~~~~~~~  146 (151)
T 2f9s_A          103 PLPTTFLINPEG-KVVKVVTGT-----MTESMIHDYMNLIKPGETSGLEH  146 (151)
T ss_dssp             SSCEEEEECTTS-EEEEEEESC-----CCHHHHHHHHHHHSCC-------
T ss_pred             CCCeEEEECCCC-cEEEEEeCC-----CCHHHHHHHHHHHHhhhhccccc
Confidence            147899999996 899988753     46889999999887666555544

>3gl3_A Putative thiol:disulfide interchange protein DSBE; oxidoreductase, PSI-II, structural genomics, protein structure initiative; 2.09A {Chlorobium tepidum tls}

Probab=99.67  E-value=5.4e-16  Score=131.02  Aligned_cols=138  Identities=17%  Similarity=0.073  Sum_probs=110.2

Q ss_pred             CCCCCCCCcccccCccccccchhhhcccccccccCCCceechhhccCCCEEEEeecCCCCcchHHHHHHHHhccchhhhc
Q 015842          183 PVNEKVAPYSAIENISIQKLTPEYKIGMERLVKTKTPPMKALELWRESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDAL  262 (399)
Q Consensus       183 ~~~~~~apl~~L~~i~l~~l~~~~~~g~~~~v~~~G~~VsLsdL~~~~pvVLvFyRg~gCP~Cr~el~~L~e~~pef~al  262 (399)
                      +++|+.+|.+.+++                    +|++++++++ +++++||.|+ ..|||+|+.++..|.++..++.+.
T Consensus         3 l~~G~~~P~f~l~~--------------------~g~~~~l~~~-~gk~vll~f~-~~~C~~C~~~~~~l~~l~~~~~~~   60 (152)
T 3gl3_A            3 LDKGDKAPDFALPG--------------------KTGVVKLSDK-TGSVVYLDFW-ASWCGPCRQSFPWMNQMQAKYKAK   60 (152)
T ss_dssp             CCTTSBCCCCEEEB--------------------SSSEEEGGGG-TTSEEEEEEE-CTTCTHHHHHHHHHHHHHHHHGGG
T ss_pred             CCCCCcCCceEeeC--------------------CCCeEeHHHh-CCCEEEEEEE-CCcCHHHHHHHHHHHHHHHHhhcC
Confidence            57888999555543                    2889999996 6667676666 999999999999999999999999


Q ss_pred             CCeEEEEecCChhhHHhhhcC-CCCCceeEeccchHHHHHhCCCcccccccccccccCHHHHHHHHHHHhcCCccccCCC
Q 015842          263 GIQLFAVLHEYIESEVKDFWP-RYWGGVVVYDQGMEFFKALGGGKLLKDKFLSGFLLNPRAIANYKRARTLGVEQNFKGE  341 (399)
Q Consensus       263 GV~LVaIspE~~e~~ik~F~~-~~l~f~VLsDp~r~lYkaLGl~r~~r~s~lsgfl~~P~v~~~~~rA~~~G~~gn~~GD  341 (399)
                      |+++|+|+.+.....++.|.. ..++|+++.|++..+++.||+.                                    
T Consensus        61 ~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~------------------------------------  104 (152)
T 3gl3_A           61 GFQVVAVNLDAKTGDAMKFLAQVPAEFTVAFDPKGQTPRLYGVK------------------------------------  104 (152)
T ss_dssp             TEEEEEEECCSSHHHHHHHHHHSCCCSEEEECTTCHHHHHTTCC------------------------------------
T ss_pred             CeEEEEEECCCCHHHHHHHHHHcCCCCceeECCcchhHHHcCCC------------------------------------
Confidence            999999998755445677774 7789999999999999988873                                    


Q ss_pred             CcccceEEEEecCCCcEEEEEecCCCCCCCCHHHHHHHHHhhh
Q 015842          342 GEIKGGLFIVGRGRSGIAYQFIERNFGDWAPLAEVIEICTQLQ  384 (399)
Q Consensus       342 ~~qLGGtFVId~gGg~I~yah~d~d~gDrad~eeVLaAl~~l~  384 (399)
                        ..|.+||||++| +|++.+.+....   +.+++.+.++++.
T Consensus       105 --~~P~~~lid~~G-~i~~~~~g~~~~---~~~~l~~~i~~~~  141 (152)
T 3gl3_A          105 --GMPTSFLIDRNG-KVLLQHVGFRPA---DKEALEQQILAAL  141 (152)
T ss_dssp             --SSSEEEEECTTS-BEEEEEESCCTT---THHHHHHHHHHHT
T ss_pred             --CCCeEEEECCCC-CEEEEEccCCCc---CHHHHHHHHHHHH
Confidence              147899999996 899999876443   4566666666654

>2ywi_A Hypothetical conserved protein; uncharacterized conserved protein, NPPSFA, national project protein structural and functional analyses; 1.60A {Geobacillus kaustophilus}

Probab=99.66  E-value=1.4e-15  Score=134.61  Aligned_cols=147  Identities=16%  Similarity=0.124  Sum_probs=116.1

Q ss_pred             CCCCCCCCCCccccc-CccccccchhhhcccccccccCCCceechhhccCCC-EEEEeecCCCCcchHHHHHHHHhccch
Q 015842          181 APPVNEKVAPYSAIE-NISIQKLTPEYKIGMERLVKTKTPPMKALELWRESP-AVLLCIRRPGCIMCRAEAHQLYAKKPI  258 (399)
Q Consensus       181 ~a~~~~~~apl~~L~-~i~l~~l~~~~~~g~~~~v~~~G~~VsLsdL~~~~p-vVLvFyRg~gCP~Cr~el~~L~e~~pe  258 (399)
                      ..+.+|+.+|.|.|. +.                   +|++++++++ ++++ +||.| ...|||.|+.++..|.++..+
T Consensus        16 ~~~~~g~~~p~f~l~~~~-------------------~G~~~~l~~~-~gk~~vlv~F-~a~~C~~C~~~~~~l~~l~~~   74 (196)
T 2ywi_A           16 NMFPLGKQAPPFALTNVI-------------------DGNVVRLEDV-KSDAATVIMF-ICNHCPFVKHVQHELVRLAND   74 (196)
T ss_dssp             CCCCTTCBCCCCEEEETT-------------------TCCEEEHHHH-CCSSEEEEEE-CCSSCHHHHHHHHHHHHHHHH
T ss_pred             cCCCcCCcCCceeeeecC-------------------CCCEEeHHHh-CCCCeEEEEE-eCCCCccHHHHHHHHHHHHHH
Confidence            456788999977666 55                   4999999997 5554 55554 588999999999999999999


Q ss_pred             hhhcCCeEEEEec--------CChhhHHhhhcC-CCCCceeEeccchHHHHHhCCCcccccccccccccCHHHHHHHHHH
Q 015842          259 FDALGIQLFAVLH--------EYIESEVKDFWP-RYWGGVVVYDQGMEFFKALGGGKLLKDKFLSGFLLNPRAIANYKRA  329 (399)
Q Consensus       259 f~alGV~LVaIsp--------E~~e~~ik~F~~-~~l~f~VLsDp~r~lYkaLGl~r~~r~s~lsgfl~~P~v~~~~~rA  329 (399)
                      +.+.|+.+|+|+.        ++++. ++.|.+ ..++|+++.|++..++++||+.                        
T Consensus        75 ~~~~~v~vv~v~~d~~~~~~~d~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~v~------------------------  129 (196)
T 2ywi_A           75 YMPKGVSFVAINSNDAEQYPEDSPEN-MKKVAEELGYPFPYLYDETQEVAKAYDAA------------------------  129 (196)
T ss_dssp             HGGGTCEEEEEECSCTTTCGGGSHHH-HHHHHHHHTCCSCEEECSSCHHHHHHTCC------------------------
T ss_pred             HHhCCcEEEEEECCccccccccCHHH-HHHHHHHcCCCceEEECCchHHHHHhCCC------------------------
Confidence            9999999999997        44543 777775 6789999999999999988873                        


Q ss_pred             HhcCCccccCCCCcccceEEEEecCCCcEEEEEecCC----CCCCCCHHHHHHHHHhhhhhhc
Q 015842          330 RTLGVEQNFKGEGEIKGGLFIVGRGRSGIAYQFIERN----FGDWAPLAEVIEICTQLQDQQR  388 (399)
Q Consensus       330 ~~~G~~gn~~GD~~qLGGtFVId~gGg~I~yah~d~d----~gDrad~eeVLaAl~~l~~~~~  388 (399)
                                    ..|.+||||++| +|+|.+...+    +....+.++|.++++.+.....
T Consensus       130 --------------~~P~~~lid~~G-~i~~~~~~~~~~~~~~g~~~~~~l~~~i~~ll~~~~  177 (196)
T 2ywi_A          130 --------------CTPDFYIFDRDL-KCVYRGQLDDSRPNNGIPVTGESIRAALDALLEGRP  177 (196)
T ss_dssp             --------------EESEEEEEETTC-BEEEEECSSSCCTTTCCCCCCHHHHHHHHHHHHTCC
T ss_pred             --------------CCCeEEEEcCCC-eEEEccccCcccccccCccCHHHHHHHHHHHHcCCC
Confidence                          136899999996 8999877544    3345577899999888765443

>2lrn_A Thiol:disulfide interchange protein; structural genomics, thioredoxin-like, NEW YORK structural G research consortium, oxidoreductase; NMR {Bacteroides SP}

Probab=99.66  E-value=6.3e-16  Score=131.78  Aligned_cols=141  Identities=13%  Similarity=0.094  Sum_probs=110.9

Q ss_pred             CCCCCCCCcccccCccccccchhhhcccccccccCCCceechhhccCCCEEEEeecCCCCcchHHHHHHHHhccchhhhc
Q 015842          183 PVNEKVAPYSAIENISIQKLTPEYKIGMERLVKTKTPPMKALELWRESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDAL  262 (399)
Q Consensus       183 ~~~~~~apl~~L~~i~l~~l~~~~~~g~~~~v~~~G~~VsLsdL~~~~pvVLvFyRg~gCP~Cr~el~~L~e~~pef~al  262 (399)
                      +.+|+.+|.|.|.+.                   +|++++++++ +++++||.|+ ..|||.|+.++..|.++..++.+.
T Consensus         3 l~~g~~~p~f~l~~~-------------------~G~~~~l~~~-~gk~vll~F~-a~~C~~C~~~~~~l~~l~~~~~~~   61 (152)
T 2lrn_A            3 LATGSVAPAITGIDL-------------------KGNSVSLNDF-KGKYVLVDFW-FAGCSWCRKETPYLLKTYNAFKDK   61 (152)
T ss_dssp             SCTTEECCCCEEECS-------------------SSCEEESGGG-TTSEEEEEEE-CTTCTTHHHHHHHHHHHHHHHTTT
T ss_pred             ccCCCcCCCceeEcC-------------------CCCEEeHHHc-CCCEEEEEEE-CCCChhHHHHHHHHHHHHHHhccC
Confidence            467888886666554                   4999999997 6667777776 899999999999999999999988


Q ss_pred             CCeEEEEecCChhhHHhhhcC-CCCCceeEecc---chHHHHHhCCCcccccccccccccCHHHHHHHHHHHhcCCcccc
Q 015842          263 GIQLFAVLHEYIESEVKDFWP-RYWGGVVVYDQ---GMEFFKALGGGKLLKDKFLSGFLLNPRAIANYKRARTLGVEQNF  338 (399)
Q Consensus       263 GV~LVaIspE~~e~~ik~F~~-~~l~f~VLsDp---~r~lYkaLGl~r~~r~s~lsgfl~~P~v~~~~~rA~~~G~~gn~  338 (399)
                      |+++|+|+.+.....++.|.. ..++|++++|+   ...++++||+.                                 
T Consensus        62 ~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~v~---------------------------------  108 (152)
T 2lrn_A           62 GFTIYGVSTDRREEDWKKAIEEDKSYWNQVLLQKDDVKDVLESYCIV---------------------------------  108 (152)
T ss_dssp             TEEEEEEECCSCHHHHHHHHHHHTCCSEEEEECHHHHHHHHHHTTCC---------------------------------
T ss_pred             CeEEEEEEccCCHHHHHHHHHHhCCCCeEEecccchhHHHHHHhCCC---------------------------------
Confidence            999999998754444666664 67899999999   67888877763                                 


Q ss_pred             CCCCcccceEEEEecCCCcEEEEEecCCCCCCCCHHHHHHHHHhhhhhhcccc
Q 015842          339 KGEGEIKGGLFIVGRGRSGIAYQFIERNFGDWAPLAEVIEICTQLQDQQRDQS  391 (399)
Q Consensus       339 ~GD~~qLGGtFVId~gGg~I~yah~d~d~gDrad~eeVLaAl~~l~~~~~~~~  391 (399)
                           ..|.+||||++| +|++.+.        +.+++.+.++.+..+..+++
T Consensus       109 -----~~P~~~lid~~G-~i~~~~~--------~~~~l~~~l~~l~~~~~~~~  147 (152)
T 2lrn_A          109 -----GFPHIILVDPEG-KIVAKEL--------RGDDLYNTVEKFVNGAKEGH  147 (152)
T ss_dssp             -----SSCEEEEECTTS-EEEEECC--------CTTHHHHHHHHHHTSSSSCC
T ss_pred             -----cCCeEEEECCCC-eEEEeeC--------CHHHHHHHHHHHHhhccccc
Confidence                 147899999996 8999874        23577777777766655544

>3u5r_E Uncharacterized protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, hypothetical protein; 2.05A {Sinorhizobium meliloti}

Probab=99.65  E-value=1.3e-15  Score=139.79  Aligned_cols=147  Identities=16%  Similarity=0.135  Sum_probs=115.9

Q ss_pred             CCCCCCCCCCcccccCccccccchhhhcccccccccCCCceechhhccCCCEEEEeecCCCCcchHHHHHHHHhccchhh
Q 015842          181 APPVNEKVAPYSAIENISIQKLTPEYKIGMERLVKTKTPPMKALELWRESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFD  260 (399)
Q Consensus       181 ~a~~~~~~apl~~L~~i~l~~l~~~~~~g~~~~v~~~G~~VsLsdL~~~~pvVLvFyRg~gCP~Cr~el~~L~e~~pef~  260 (399)
                      ..+++|+.+|.|.|++.                   +|++++++++ +++++||++|-..|||.|+.++..|.+++.++.
T Consensus        30 ~~l~~G~~aP~f~l~~~-------------------~G~~v~l~~~-~gk~~vll~F~a~~C~~C~~~~~~l~~l~~~~~   89 (218)
T 3u5r_E           30 NSITLGTRAADFVLPDA-------------------GGNLFTLAEF-KDSPALLVAFISNRCPFVVLIREALAKFAGDYA   89 (218)
T ss_dssp             CCCCTTCBCCCCCEECT-------------------TCCEECGGGG-TTCSEEEEEECCSSCHHHHTTHHHHHHHHHHHT
T ss_pred             CcCCCCCcCCCcEeECC-------------------CCCEEeHHHh-CCCCeEEEEEECCCCccHHHHHHHHHHHHHHHH
Confidence            35688999997777665                   5999999996 555644444456999999999999999999999


Q ss_pred             hcCCeEEEEec--------CChhhHHhhhcC-CCCCceeEeccchHHHHHhCCCcccccccccccccCHHHHHHHHHHHh
Q 015842          261 ALGIQLFAVLH--------EYIESEVKDFWP-RYWGGVVVYDQGMEFFKALGGGKLLKDKFLSGFLLNPRAIANYKRART  331 (399)
Q Consensus       261 alGV~LVaIsp--------E~~e~~ik~F~~-~~l~f~VLsDp~r~lYkaLGl~r~~r~s~lsgfl~~P~v~~~~~rA~~  331 (399)
                      +.|+++|+|+.        ++++. ++.|.+ ..++|++++|++..++++||+..                         
T Consensus        90 ~~~v~vv~Vs~d~~~~~~~d~~~~-~~~~~~~~~~~~~~l~D~~~~~~~~~~v~~-------------------------  143 (218)
T 3u5r_E           90 GQGLAVVAINSNDAQAFPEETLER-VGAEVKAYGYGFPYLKDASQSVAKAYGAAC-------------------------  143 (218)
T ss_dssp             TTTEEEEEEECSCTTTCGGGSHHH-HHHHHHHHTCCSCEEECTTCHHHHHHTCCE-------------------------
T ss_pred             hCCcEEEEEECCcccccccCCHHH-HHHHHHHhCCCccEEECCccHHHHHcCCCC-------------------------
Confidence            99999999998        45543 777775 67899999999999999998741                         


Q ss_pred             cCCccccCCCCcccceEEEEecCCCcEEEEEecCC----CCCCCCHHHHHHHHHhhhhhh
Q 015842          332 LGVEQNFKGEGEIKGGLFIVGRGRSGIAYQFIERN----FGDWAPLAEVIEICTQLQDQQ  387 (399)
Q Consensus       332 ~G~~gn~~GD~~qLGGtFVId~gGg~I~yah~d~d----~gDrad~eeVLaAl~~l~~~~  387 (399)
                                   .|.+||||++| +|+|...-.+    ....++.++|.++++.+...+
T Consensus       144 -------------~P~~~liD~~G-~i~~~g~~d~~~~~~~~~~~~~~l~~~i~~ll~~~  189 (218)
T 3u5r_E          144 -------------TPDFFLYDRER-RLVYHGQFDDARPGNGKDVTGADLRAAVDAVLKGK  189 (218)
T ss_dssp             -------------ESEEEEECTTC-BEEEEECSSSCCTTSCCCCCCHHHHHHHHHHHTTC
T ss_pred             -------------CCeEEEECCCC-cEEEeccccccccccccccCHHHHHHHHHHHHcCC
Confidence                         37899999997 8998765432    233456788888888876544

>2l5o_A Putative thioredoxin; structural genomics, unknown function, PSI-2, protein struct initiative; NMR {Neisseria meningitidis serogroup B}

Probab=99.64  E-value=2.4e-15  Score=127.10  Aligned_cols=143  Identities=15%  Similarity=0.247  Sum_probs=113.3

Q ss_pred             CCCCCCCCcccccCccccccchhhhcccccccccCCCceechhhccCCCEEEEeecCCCCcchHHHHHHHHhccchhhhc
Q 015842          183 PVNEKVAPYSAIENISIQKLTPEYKIGMERLVKTKTPPMKALELWRESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDAL  262 (399)
Q Consensus       183 ~~~~~~apl~~L~~i~l~~l~~~~~~g~~~~v~~~G~~VsLsdL~~~~pvVLvFyRg~gCP~Cr~el~~L~e~~pef~al  262 (399)
                      +.+|+.+|.+.+.+.                   +|+++++.++ +++++||.|+ ..|||.|+.++..|.++..++...
T Consensus         2 ~~~G~~~p~~~l~~~-------------------~g~~~~l~~~-~gk~~lv~f~-~~~C~~C~~~~~~l~~l~~~~~~~   60 (153)
T 2l5o_A            2 SLDSKTAPAFSLPDL-------------------HGKTVSNADL-QGKVTLINFW-FPSCPGCVSEMPKIIKTANDYKNK   60 (153)
T ss_dssp             --CCTTCCSCEEECT-------------------TSCEEEHHHH-TTCEEEEEEE-CTTCTTHHHHHHHHHHHHHHGGGT
T ss_pred             CCCCCCCCCcEeecC-------------------CCCCccHHHh-CCCEEEEEEE-CCCCccHHHHHHHHHHHHHHhccC
Confidence            357888886666554                   4999999996 6677777776 789999999999999999999988


Q ss_pred             CCeEEEEec--CChhhHHhhhcC-CCCCceeEeccchHHHHHhCCCcccccccccccccCHHHHHHHHHHHhcCCccccC
Q 015842          263 GIQLFAVLH--EYIESEVKDFWP-RYWGGVVVYDQGMEFFKALGGGKLLKDKFLSGFLLNPRAIANYKRARTLGVEQNFK  339 (399)
Q Consensus       263 GV~LVaIsp--E~~e~~ik~F~~-~~l~f~VLsDp~r~lYkaLGl~r~~r~s~lsgfl~~P~v~~~~~rA~~~G~~gn~~  339 (399)
                      |+.+|+|+.  ++.+ .++.|.+ ..++|+++.|++..+.+.||+.                                  
T Consensus        61 ~~~vv~v~~~~~~~~-~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~----------------------------------  105 (153)
T 2l5o_A           61 NFQVLAVAQPIDPIE-SVRQYVKDYGLPFTVMYDADKAVGQAFGTQ----------------------------------  105 (153)
T ss_dssp             TEEEEEEECTTSCHH-HHHHHHHHTTCCSEEEECSSCHHHHHHTCC----------------------------------
T ss_pred             CeEEEEEecCCCCHH-HHHHHHHHcCCCceEEcCchHHHHHHcCCC----------------------------------
Confidence            999999994  4444 3677775 7789999999999999988873                                  


Q ss_pred             CCCcccceEEEEecCCCcEEEEEecCCCCCCCCHHHHHHHHHhhhhhhcccc
Q 015842          340 GEGEIKGGLFIVGRGRSGIAYQFIERNFGDWAPLAEVIEICTQLQDQQRDQS  391 (399)
Q Consensus       340 GD~~qLGGtFVId~gGg~I~yah~d~d~gDrad~eeVLaAl~~l~~~~~~~~  391 (399)
                          ..|.+||||++| +|++.+.+.     .+.+++.+.++.+-....+.+
T Consensus       106 ----~~P~~~lid~~G-~i~~~~~g~-----~~~~~l~~~l~~ll~~~~~~~  147 (153)
T 2l5o_A          106 ----VYPTSVLIGKKG-EILKTYVGE-----PDFGKLYQEIDTAWRNSDAEG  147 (153)
T ss_dssp             ----SSSEEEEECSSS-CCCEEEESS-----CCHHHHHHHHHHHHHCCSSCC
T ss_pred             ----ccCeEEEECCCC-cEEEEEcCC-----CCHHHHHHHHHHHHHhhhhcc
Confidence                147899999996 888887753     678999999988765554433

>3ewl_A Uncharacterized conserved protein BF1870; alpha-beta fold, structural genomics, PSI-2, protein structu initiative; 2.00A {Bacteroides fragilis}

Probab=99.64  E-value=2.3e-15  Score=126.08  Aligned_cols=133  Identities=9%  Similarity=0.094  Sum_probs=104.2

Q ss_pred             CCCCCCCcccccCccccccchhhhcccccccccCCCceechhhccCCCEEEEeecCCCCcchHHHHHHHHh---ccchhh
Q 015842          184 VNEKVAPYSAIENISIQKLTPEYKIGMERLVKTKTPPMKALELWRESPAVLLCIRRPGCIMCRAEAHQLYA---KKPIFD  260 (399)
Q Consensus       184 ~~~~~apl~~L~~i~l~~l~~~~~~g~~~~v~~~G~~VsLsdL~~~~pvVLvFyRg~gCP~Cr~el~~L~e---~~pef~  260 (399)
                      ++|+.+|.|.|++.                   +|++++++++ +++++||.|+ ..|||.|+.++..|.+   +..++.
T Consensus         2 ~~G~~~p~f~l~~~-------------------~g~~~~l~~~-~gk~vll~F~-a~~C~~C~~~~~~l~~~~~l~~~~~   60 (142)
T 3ewl_A            2 NAGMKAADFTYVTV-------------------HGDNSRMSRL-KAQYTMLFFY-DPDCSNCRKFEKLFAEIPAFVEMVE   60 (142)
T ss_dssp             CTTSBCCCCEEECT-------------------TCCEEEGGGC-CCSEEEEEEC-CSSCHHHHHHHHHHHTCHHHHHHHH
T ss_pred             CCCCcCCCCEEECC-------------------CCCEEEhhhc-CCCEEEEEEE-CCCCccHHHHHHHHHHhHHHHHHhc
Confidence            57899997777665                   4999999996 5566666655 8999999999999888   788898


Q ss_pred             hcCCeEEEEecCChhhHHhhhcC-CCCCceeEeccchHHHH--HhCCCcccccccccccccCHHHHHHHHHHHhcCCccc
Q 015842          261 ALGIQLFAVLHEYIESEVKDFWP-RYWGGVVVYDQGMEFFK--ALGGGKLLKDKFLSGFLLNPRAIANYKRARTLGVEQN  337 (399)
Q Consensus       261 alGV~LVaIspE~~e~~ik~F~~-~~l~f~VLsDp~r~lYk--aLGl~r~~r~s~lsgfl~~P~v~~~~~rA~~~G~~gn  337 (399)
                      +.|+.+|+|+.+.....++.|.+ ..++|+++.|++..+..  .||+.                                
T Consensus        61 ~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~v~--------------------------------  108 (142)
T 3ewl_A           61 NGTLRVLAIYPDENREEWATKAVYMPQGWIVGWNKAGDIRTRQLYDIR--------------------------------  108 (142)
T ss_dssp             HTSEEEEEEECSSCHHHHHHHHTTSCTTCEEEECTTCHHHHTTCSCCC--------------------------------
T ss_pred             cCCeEEEEEEecCCHHHHHHHHHHcCCCcceeeCCccchhhHHHcCCC--------------------------------
Confidence            89999999998755445777775 77899999999988876  44442                                


Q ss_pred             cCCCCcccceEEEEecCCCcEEEEEecCCCCCCCCHHHHHHHHHhhh
Q 015842          338 FKGEGEIKGGLFIVGRGRSGIAYQFIERNFGDWAPLAEVIEICTQLQ  384 (399)
Q Consensus       338 ~~GD~~qLGGtFVId~gGg~I~yah~d~d~gDrad~eeVLaAl~~l~  384 (399)
                            ..|.+||||++| +|++.        ..+.+++.+.++.+.
T Consensus       109 ------~~P~~~lid~~G-~i~~~--------~~~~~~l~~~l~~~~  140 (142)
T 3ewl_A          109 ------ATPTIYLLDGRK-RVILK--------DTSMEQLIDYLATQA  140 (142)
T ss_dssp             ------SSSEEEEECTTC-BEEEC--------SCCHHHHHHHHHC--
T ss_pred             ------CCCeEEEECCCC-CEEec--------CCCHHHHHHHHHHHc
Confidence                  257899999996 88872        367888888887654

>1xzo_A BSSCO, hypothetical protein YPMQ; thioredoxin-like fold, structural genomics, montreal-kingsto bacterial structural genomics initiative, BSGI; 1.70A {Bacillus subtilis} SCOP: c.47.1.10 PDB: 1on4_A

Probab=99.63  E-value=3.5e-15  Score=129.00  Aligned_cols=158  Identities=9%  Similarity=0.055  Sum_probs=117.6

Q ss_pred             CCCCCCCCCCCCcccccCccccccchhhhcccccccccCCCceechhhccCCCEEEEeecCCCCc-chHHHHHHHHhccc
Q 015842          179 IQAPPVNEKVAPYSAIENISIQKLTPEYKIGMERLVKTKTPPMKALELWRESPAVLLCIRRPGCI-MCRAEAHQLYAKKP  257 (399)
Q Consensus       179 ~~~a~~~~~~apl~~L~~i~l~~l~~~~~~g~~~~v~~~G~~VsLsdL~~~~pvVLvFyRg~gCP-~Cr~el~~L~e~~p  257 (399)
                      -...+.+|+.+|.|.|++.                   +|++++++++ +++++||.|+ ..||| .|+.++..|.+++.
T Consensus         3 ~~~~l~~g~~~p~f~l~~~-------------------~G~~~~l~~~-~gk~vll~f~-~~~C~~~C~~~~~~l~~l~~   61 (174)
T 1xzo_A            3 QQIKDPLNYEVEPFTFQNQ-------------------DGKNVSLESL-KGEVWLADFI-FTNCETICPPMTAHMTDLQK   61 (174)
T ss_dssp             CCCCSCCCEECCCCEEECT-------------------TSCEEETGGG-TTCCEEEEEE-CSCCSSCCCSHHHHHHHHHH
T ss_pred             CCCcCccccccCCcEEEcC-------------------CCCEEehhhc-CCCEEEEEEE-cCCCcchhHHHHHHHHHHHH
Confidence            3456788999997766665                   4999999995 6677777776 88999 99999999999999


Q ss_pred             hhhhcC--CeEEEEecC----ChhhHHhhhcC-CCCCc---eeEeccchHHHHHhCCCcccccccccccccCHHHHHHHH
Q 015842          258 IFDALG--IQLFAVLHE----YIESEVKDFWP-RYWGG---VVVYDQGMEFFKALGGGKLLKDKFLSGFLLNPRAIANYK  327 (399)
Q Consensus       258 ef~alG--V~LVaIspE----~~e~~ik~F~~-~~l~f---~VLsDp~r~lYkaLGl~r~~r~s~lsgfl~~P~v~~~~~  327 (399)
                      ++.+.|  +++|+|+.+    +++ .++.|.+ ..++|   ++++|++..+.++|+...   +.   .+ .         
T Consensus        62 ~~~~~~~~~~vv~is~d~~~d~~~-~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~---~~---~~-~---------  124 (174)
T 1xzo_A           62 KLKAENIDVRIISFSVDPENDKPK-QLKKFAANYPLSFDNWDFLTGYSQSEIEEFALKS---FK---AI-V---------  124 (174)
T ss_dssp             HHHHTTCCCEEEEEESCTTTCCHH-HHHHHHTTSCCCGGGEEEEBCSCHHHHHHHHHHH---HC---CC-C---------
T ss_pred             HhhhcCCcEEEEEEEeCCCCCCHH-HHHHHHHHcCCCCcceEEEeCCCHHHHHHHHHhh---cC---ee-E---------
Confidence            999887  999999975    444 3777875 66788   899999999988876521   00   00 0         


Q ss_pred             HHHhcCCccccCCCCcccceEEEEecCCCcEEEEEecCCCCCCCCHHHHHHHHHhhh
Q 015842          328 RARTLGVEQNFKGEGEIKGGLFIVGRGRSGIAYQFIERNFGDWAPLAEVIEICTQLQ  384 (399)
Q Consensus       328 rA~~~G~~gn~~GD~~qLGGtFVId~gGg~I~yah~d~d~gDrad~eeVLaAl~~l~  384 (399)
                          ....+.  ......|.+||||++| +|++.|.+...   .+.++|++.++.+.
T Consensus       125 ----~~~~~~--~~~~~~p~~~lid~~G-~i~~~~~g~~~---~~~~~l~~~l~~ll  171 (174)
T 1xzo_A          125 ----KKPEGE--DQVIHQSSFYLVGPDG-KVLKDYNGVEN---TPYDDIISDVKSAS  171 (174)
T ss_dssp             ----CCCSSC--CSCCSCCEEEEECTTS-EEEEEEESSSS---CCHHHHHHHHHHHT
T ss_pred             ----eecCCC--CeeeeeeEEEEECCCC-eEEEEEcCCCC---CCHHHHHHHHHHHH
Confidence                000000  1123468999999996 89999987643   46889999888764

>3hcz_A Possible thiol-disulfide isomerase; APC61559.2, cytophaga hutchinsoni structural genomics, PSI-2, protein structure initiative; 1.88A {Cytophaga hutchinsonii}

Probab=99.63  E-value=1.3e-15  Score=127.10  Aligned_cols=138  Identities=20%  Similarity=0.178  Sum_probs=110.5

Q ss_pred             CCCCCCCCCCcccccCccccccchhhhcccccccccCCCceechhhccCCCEEEEeecCCCCcchHHHHHHHHhccchhh
Q 015842          181 APPVNEKVAPYSAIENISIQKLTPEYKIGMERLVKTKTPPMKALELWRESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFD  260 (399)
Q Consensus       181 ~a~~~~~~apl~~L~~i~l~~l~~~~~~g~~~~v~~~G~~VsLsdL~~~~pvVLvFyRg~gCP~Cr~el~~L~e~~pef~  260 (399)
                      .+..+|+.+|.+.+.+.                   +|++++++++ +++++||.|+ ..|||.|+.++..|.++..++.
T Consensus         3 ~~~~~G~~~p~~~l~~~-------------------~g~~~~l~~~-~gk~vll~f~-~~~C~~C~~~~~~l~~l~~~~~   61 (148)
T 3hcz_A            3 APLLLGKKAPNLYMTDT-------------------TGTYRYLYDV-QAKYTILFFW-DSQCGHCQQETPKLYDWWLKNR   61 (148)
T ss_dssp             CCCCTTSBCCCCCCBCT-------------------TSCBCCGGGC-CCSEEEEEEE-CGGGCTTCSHHHHHHHHHHHHG
T ss_pred             CccCCCCcCCceEEecC-------------------CCCEEEhHHc-CCCEEEEEEE-CCCCccHHHHHHHHHHHHHHhc
Confidence            45688999997766665                   4899999997 5566666655 8899999999999999999999


Q ss_pred             hcCCeEEEEecCChhhHHhhhcC-CCCC-ceeEeccchH--HHHHhCCCcccccccccccccCHHHHHHHHHHHhcCCcc
Q 015842          261 ALGIQLFAVLHEYIESEVKDFWP-RYWG-GVVVYDQGME--FFKALGGGKLLKDKFLSGFLLNPRAIANYKRARTLGVEQ  336 (399)
Q Consensus       261 alGV~LVaIspE~~e~~ik~F~~-~~l~-f~VLsDp~r~--lYkaLGl~r~~r~s~lsgfl~~P~v~~~~~rA~~~G~~g  336 (399)
                      +.|+.+|+|+.+.....++.|.+ ..++ |+++.|++..  +.+.||+.                               
T Consensus        62 ~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~i~-------------------------------  110 (148)
T 3hcz_A           62 AKGIQVYAANIERKDEEWLKFIRSKKIGGWLNVRDSKNHTDFKITYDIY-------------------------------  110 (148)
T ss_dssp             GGTEEEEEEECCSSSHHHHHHHHHHTCTTSEEEECTTCCCCHHHHHCCC-------------------------------
T ss_pred             cCCEEEEEEEecCCHHHHHHHHHHcCCCCceEEeccccchhHHHhcCcC-------------------------------
Confidence            99999999998754445777775 5677 9999999988  88888763                               


Q ss_pred             ccCCCCcccceEEEEecCCCcEEEEEecCCCCCCCCHHHHHHHHHhh
Q 015842          337 NFKGEGEIKGGLFIVGRGRSGIAYQFIERNFGDWAPLAEVIEICTQL  383 (399)
Q Consensus       337 n~~GD~~qLGGtFVId~gGg~I~yah~d~d~gDrad~eeVLaAl~~l  383 (399)
                             ..|.+||||++| +|++.+.+.     .+++++++.+..+
T Consensus       111 -------~~P~~~lid~~G-~i~~~~~g~-----~~~~~~l~~l~~~  144 (148)
T 3hcz_A          111 -------ATPVLYVLDKNK-VIIAKRIGY-----ENLDDFLVQYEKS  144 (148)
T ss_dssp             -------SSCEEEEECTTC-BEEEESCCG-----GGHHHHHHHHHHH
T ss_pred             -------CCCEEEEECCCC-cEEEecCCH-----HHHHHHHHHHHHH
Confidence                   147899999996 899887543     6788888777654

>2lrt_A Uncharacterized protein; structural genomics, thioredoxin-like, NEW YORK structural G research consortium, nysgrc, PSI-biology; NMR {Bacteroides vulgatus}

Probab=99.62  E-value=5.5e-15  Score=127.20  Aligned_cols=137  Identities=13%  Similarity=0.064  Sum_probs=109.6

Q ss_pred             CCCCCCCCCCCcccccCccccccchhhhcccccccccCCCceechhhccCCCEEEEeecCCCCcchHHHHHHHHhccchh
Q 015842          180 QAPPVNEKVAPYSAIENISIQKLTPEYKIGMERLVKTKTPPMKALELWRESPAVLLCIRRPGCIMCRAEAHQLYAKKPIF  259 (399)
Q Consensus       180 ~~a~~~~~~apl~~L~~i~l~~l~~~~~~g~~~~v~~~G~~VsLsdL~~~~pvVLvFyRg~gCP~Cr~el~~L~e~~pef  259 (399)
                      ..+...|+.+|.|.|.+.                   +|++++++++ +++++||.|+- .|||.|+.++..|.+++.++
T Consensus         6 ~~~~~~g~~~p~f~l~~~-------------------~G~~~~l~~~-~gk~vll~F~a-~wC~~C~~~~~~l~~l~~~~   64 (152)
T 2lrt_A            6 PEDKIKEASIIDIQLKDL-------------------KGNTRSLTDL-KGKVVLIDFTV-YNNAMSAAHNLALRELYNKY   64 (152)
T ss_dssp             CCSSSCTTCSCCCCEEBT-------------------TSCEECTTTG-GGSEEEEEEEC-TTCHHHHHHHHHHHHHHHHH
T ss_pred             chhhccCCCCCCeEEEcC-------------------CCCEEeHHHh-CCCEEEEEEEc-CCChhhHHHHHHHHHHHHHh
Confidence            345678888996666554                   4999999996 67788888885 79999999999999999999


Q ss_pred             hhcCCeEEEEecCChhhHHhhhcCCCCCceeEeccchH---HHHHhCCCcccccccccccccCHHHHHHHHHHHhcCCcc
Q 015842          260 DALGIQLFAVLHEYIESEVKDFWPRYWGGVVVYDQGME---FFKALGGGKLLKDKFLSGFLLNPRAIANYKRARTLGVEQ  336 (399)
Q Consensus       260 ~alGV~LVaIspE~~e~~ik~F~~~~l~f~VLsDp~r~---lYkaLGl~r~~r~s~lsgfl~~P~v~~~~~rA~~~G~~g  336 (399)
                      .+.|+.+|+|+.+.....++.|.. .++|+++.|++..   +.++||+.                               
T Consensus        65 ~~~~~~vv~i~~d~~~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~v~-------------------------------  112 (152)
T 2lrt_A           65 ASQGFEIYQISLDGDEHFWKTSAD-NLPWVCVRDANGAYSSYISLYNVT-------------------------------  112 (152)
T ss_dssp             GGGTEEEEEEECSCCHHHHHHHHT-TCSSEEEECSSGGGCHHHHHHTCC-------------------------------
T ss_pred             ccCCeEEEEEEccCCHHHHHHHHh-CCCceEEECCCCcchHHHHHcCcc-------------------------------
Confidence            999999999998876655666664 4899999999987   88888763                               


Q ss_pred             ccCCCCcccceEEEEecCCCcEEEEEecCCCCCCCCHHHHHHHHHh
Q 015842          337 NFKGEGEIKGGLFIVGRGRSGIAYQFIERNFGDWAPLAEVIEICTQ  382 (399)
Q Consensus       337 n~~GD~~qLGGtFVId~gGg~I~yah~d~d~gDrad~eeVLaAl~~  382 (399)
                             ..|.+||||++| +|++.+.+     ..++++.+.++..
T Consensus       113 -------~~P~~~lid~~G-~i~~~~~g-----~~~~e~~~~~~~~  145 (152)
T 2lrt_A          113 -------NLPSVFLVNRNN-ELSARGEN-----IKDLDEAIKKLLE  145 (152)
T ss_dssp             -------SCSEEEEEETTT-EEEEETTT-----CSCHHHHHHHHHG
T ss_pred             -------cCceEEEECCCC-eEEEecCC-----HHHHHHHHHHHHh
Confidence                   147899999996 89987664     3667777665543

>3eyt_A Uncharacterized protein SPOA0173; thioredoxin-like superfamily protein SPOA0173, silicibacter DSS, structural genomics, PSI-2; 1.95A {Silicibacter pomeroyi}

Probab=99.61  E-value=4.9e-15  Score=126.19  Aligned_cols=138  Identities=14%  Similarity=0.065  Sum_probs=108.3

Q ss_pred             CCCCCCcccccCccccccchhhhcccccccccCCCceechhhccCCCEEEEeecCCCCcchHHH-HHHHHhccchhhhcC
Q 015842          185 NEKVAPYSAIENISIQKLTPEYKIGMERLVKTKTPPMKALELWRESPAVLLCIRRPGCIMCRAE-AHQLYAKKPIFDALG  263 (399)
Q Consensus       185 ~~~~apl~~L~~i~l~~l~~~~~~g~~~~v~~~G~~VsLsdL~~~~pvVLvFyRg~gCP~Cr~e-l~~L~e~~pef~alG  263 (399)
                      +|+.+|.|.|++.    ++             +|++++++++ +++++||.|+ ..|||.|+.+ +..|.+++.++...|
T Consensus         2 ~g~~aP~f~l~~~----~~-------------~g~~~~l~~~-~gk~vlv~f~-a~wC~~C~~~~~~~l~~l~~~~~~~~   62 (158)
T 3eyt_A            2 NAMKAPELQIQQW----FN-------------SATDLTLADL-RGKVIVIEAF-QMLCPGCVMHGIPLAQKVRAAFPEDK   62 (158)
T ss_dssp             CCEECCCCCEEEE----ES-------------CSSCCCTGGG-TTSEEEEEEE-CTTCHHHHHTHHHHHHHHHHHSCTTT
T ss_pred             CCCcCCCceehhh----hc-------------CCCccCHHHh-CCCEEEEEEE-CCcCcchhhhhhHHHHHHHHHhCcCC
Confidence            5777886666553    11             4899999996 5667776666 6899999997 999999999998889


Q ss_pred             CeEEEEec-------CChhhHHhhhcC-CCCCceeEeccch-----HHHHHhCCCcccccccccccccCHHHHHHHHHHH
Q 015842          264 IQLFAVLH-------EYIESEVKDFWP-RYWGGVVVYDQGM-----EFFKALGGGKLLKDKFLSGFLLNPRAIANYKRAR  330 (399)
Q Consensus       264 V~LVaIsp-------E~~e~~ik~F~~-~~l~f~VLsDp~r-----~lYkaLGl~r~~r~s~lsgfl~~P~v~~~~~rA~  330 (399)
                      +.+|+|+.       ++.+. ++.|.+ ..++|+++.|++.     .+++.||+.                         
T Consensus        63 v~~v~v~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~v~-------------------------  116 (158)
T 3eyt_A           63 VAVLGLHTVFEHHEAMTPIS-LKAFLHEYRIKFPVGVDQPGDGAMPRTMAAYQMR-------------------------  116 (158)
T ss_dssp             EEEEEEECCCSCGGGSCHHH-HHHHHHHTTCCSCEEEECCCSSSSCHHHHHTTCC-------------------------
T ss_pred             EEEEEEEecccccccCCHHH-HHHHHHHcCCCceEEEcCccchhhHHHHHHcCCC-------------------------
Confidence            99999994       45554 777775 7889999999998     678877763                         


Q ss_pred             hcCCccccCCCCcccceEEEEecCCCcEEEEEecCCCCCCCCHHHHHHHHHhhhhh
Q 015842          331 TLGVEQNFKGEGEIKGGLFIVGRGRSGIAYQFIERNFGDWAPLAEVIEICTQLQDQ  386 (399)
Q Consensus       331 ~~G~~gn~~GD~~qLGGtFVId~gGg~I~yah~d~d~gDrad~eeVLaAl~~l~~~  386 (399)
                                   ..|.+||||++| +|++.+.+.     .+.+++.+.++.+-.+
T Consensus       117 -------------~~P~~~lid~~G-~i~~~~~g~-----~~~~~l~~~i~~ll~~  153 (158)
T 3eyt_A          117 -------------GTPSLLLIDKAG-DLRAHHFGD-----VSELLLGAEIATLLGE  153 (158)
T ss_dssp             -------------SSSEEEEECTTS-EEEEEEESC-----CCHHHHHHHHHHHHTS
T ss_pred             -------------CCCEEEEECCCC-CEEEEEeCC-----CCHHHHHHHHHHHhcc
Confidence                         147899999996 899988864     4677888888877544

>3fw2_A Thiol-disulfide oxidoreductase; structural genomics, APC61456.1, thiol-disulfide oxidoreduct TLPA-like family, PSI-2; 1.74A {Bacteroides thetaiotaomicron}

Probab=99.60  E-value=8.9e-15  Score=124.36  Aligned_cols=136  Identities=11%  Similarity=0.008  Sum_probs=110.6

Q ss_pred             CCCCCCCCCcccccCccccccchhhhcccccccccCCCceech--hhccCCCEEEEeecCCCCcc--hHHHHHHHHhccc
Q 015842          182 PPVNEKVAPYSAIENISIQKLTPEYKIGMERLVKTKTPPMKAL--ELWRESPAVLLCIRRPGCIM--CRAEAHQLYAKKP  257 (399)
Q Consensus       182 a~~~~~~apl~~L~~i~l~~l~~~~~~g~~~~v~~~G~~VsLs--dL~~~~pvVLvFyRg~gCP~--Cr~el~~L~e~~p  257 (399)
                      ..++|+.+|.|.|++.                   +|++++++  ++ +++++||.|+. .|||.  |+.++..|.+++.
T Consensus         4 ~l~~G~~~p~f~l~~~-------------------~g~~~~l~~~~~-~gk~vll~F~a-~~C~~v~C~~~~~~l~~l~~   62 (150)
T 3fw2_A            4 KSEIGKYAPFFSLPNA-------------------KGEKITRSSDAF-KQKSLLINFWA-SWNDSISQKQSNSELREIYK   62 (150)
T ss_dssp             TTSTTSBCCCCCEEBT-------------------TCCEECTTSTTT-TTSEEEEEEEC-TTCCCHHHHHHHHHHHHHHH
T ss_pred             cccCCCcCCccEeECC-------------------CCCEEecchhhh-CCCEEEEEEEe-CCCCchHHHHHHHHHHHHHH
Confidence            5678999997776665                   49999999  86 66677776665 99999  9999999999999


Q ss_pred             hh-hhcCCeEEEEecCChhhHHhhhcC-CCCCceeEecc---chHHHHHhCCCcccccccccccccCHHHHHHHHHHHhc
Q 015842          258 IF-DALGIQLFAVLHEYIESEVKDFWP-RYWGGVVVYDQ---GMEFFKALGGGKLLKDKFLSGFLLNPRAIANYKRARTL  332 (399)
Q Consensus       258 ef-~alGV~LVaIspE~~e~~ik~F~~-~~l~f~VLsDp---~r~lYkaLGl~r~~r~s~lsgfl~~P~v~~~~~rA~~~  332 (399)
                      ++ +..|+++|+|+.+.....++.|.+ ..++|+++.|+   +..+++.||+.                           
T Consensus        63 ~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~v~---------------------------  115 (150)
T 3fw2_A           63 KYKKNKYIGMLGISLDVDKQQWKDAIKRDTLDWEQVCDFGGLNSEVAKQYSIY---------------------------  115 (150)
T ss_dssp             HHTTCSSEEEEEEECCSCHHHHHHHHHHTTCCSEEECCSCGGGCHHHHHTTCC---------------------------
T ss_pred             HhccCCCeEEEEEEcCCCHHHHHHHHHHhCCCceEEEcCcccchHHHHHcCCC---------------------------
Confidence            99 888999999998866445777775 78899999999   67888888763                           


Q ss_pred             CCccccCCCCcccceEEEEecCCCcEEEEEecCCCCCCCCHHHHHHHHHhhhh
Q 015842          333 GVEQNFKGEGEIKGGLFIVGRGRSGIAYQFIERNFGDWAPLAEVIEICTQLQD  385 (399)
Q Consensus       333 G~~gn~~GD~~qLGGtFVId~gGg~I~yah~d~d~gDrad~eeVLaAl~~l~~  385 (399)
                                 ..|.+||||++| +|++.+.        +.+++.+.++.+-.
T Consensus       116 -----------~~P~~~lid~~G-~i~~~~~--------~~~~l~~~l~~ll~  148 (150)
T 3fw2_A          116 -----------KIPANILLSSDG-KILAKNL--------RGEELKKKIENIVE  148 (150)
T ss_dssp             -----------SSSEEEEECTTS-BEEEESC--------CHHHHHHHHHHHHH
T ss_pred             -----------ccCeEEEECCCC-EEEEccC--------CHHHHHHHHHHHHh
Confidence                       147899999996 8999884        66777777776643

>3hdc_A Thioredoxin family protein; ATCC53774, DSM 7210, , structural genomics, PSI-2, protein structure initiative; 1.77A {Geobacter metallireducens gs-15}

Probab=99.60  E-value=7.8e-15  Score=126.03  Aligned_cols=138  Identities=15%  Similarity=0.067  Sum_probs=110.7

Q ss_pred             CCCCCCCCCCCcccccCccccccchhhhcccccccccCCCceechhhccCCCEEEEeecCCCCcchHHHHHHHHhccchh
Q 015842          180 QAPPVNEKVAPYSAIENISIQKLTPEYKIGMERLVKTKTPPMKALELWRESPAVLLCIRRPGCIMCRAEAHQLYAKKPIF  259 (399)
Q Consensus       180 ~~a~~~~~~apl~~L~~i~l~~l~~~~~~g~~~~v~~~G~~VsLsdL~~~~pvVLvFyRg~gCP~Cr~el~~L~e~~pef  259 (399)
                      ...+.+|+.+|.+.+.+.                   +|+.++++++ +++++||.|+ ..|||.|+.++..|.+...++
T Consensus        12 ~~~~~~G~~~p~f~l~~~-------------------~g~~~~l~~~-~gk~vll~F~-~~~C~~C~~~~~~l~~~~~~~   70 (158)
T 3hdc_A           12 APLVRTGALAPNFKLPTL-------------------SGENKSLAQY-RGKIVLVNFW-ASWCPYCRDEMPSMDRLVKSF   70 (158)
T ss_dssp             SCCCCTTSBCCCCEEECT-------------------TSCEEESGGG-TTSEEEEEEE-CTTCHHHHHHHHHHHHHHHHS
T ss_pred             CcccCCCCcCCCceeEcC-------------------CCCEEehHHh-CCCEEEEEEE-CCcCHHHHHHHHHHHHHHHHc
Confidence            345678899996666555                   4999999996 6667777777 899999999999999999999


Q ss_pred             hhcCCeEEEEecCChhhHHhhhcC-CCCCceeEeccchHHHHHhCCCcccccccccccccCHHHHHHHHHHHhcCCcccc
Q 015842          260 DALGIQLFAVLHEYIESEVKDFWP-RYWGGVVVYDQGMEFFKALGGGKLLKDKFLSGFLLNPRAIANYKRARTLGVEQNF  338 (399)
Q Consensus       260 ~alGV~LVaIspE~~e~~ik~F~~-~~l~f~VLsDp~r~lYkaLGl~r~~r~s~lsgfl~~P~v~~~~~rA~~~G~~gn~  338 (399)
                      .+.++.+|+|+.+..   +++|.. ..++|+++.|++..+++.||+.                                 
T Consensus        71 ~~~~~~~v~v~~d~~---~~~~~~~~~~~~~~~~d~~~~~~~~~~v~---------------------------------  114 (158)
T 3hdc_A           71 PKGDLVVLAVNVEKR---FPEKYRRAPVSFNFLSDATGQVQQRYGAN---------------------------------  114 (158)
T ss_dssp             STTSEEEEEEECSSS---CCGGGGGCCCSCEEEECTTSHHHHHTTCC---------------------------------
T ss_pred             ccCCeEEEEEeCCHH---HHHHHHHcCCCceEEECchHHHHHHhCCC---------------------------------
Confidence            888999999998762   456664 6789999999999999988873                                 


Q ss_pred             CCCCcccceEEEEecCCCcEEEEEecCCCCCCCCHHHHHHHHHhh
Q 015842          339 KGEGEIKGGLFIVGRGRSGIAYQFIERNFGDWAPLAEVIEICTQL  383 (399)
Q Consensus       339 ~GD~~qLGGtFVId~gGg~I~yah~d~d~gDrad~eeVLaAl~~l  383 (399)
                           ..|.+||||++| +|++.+.+....+.   .++++.+.+.
T Consensus       115 -----~~P~~~lid~~G-~i~~~~~G~~~~~~---~~~~~~~~~~  150 (158)
T 3hdc_A          115 -----RLPDTFIVDRKG-IIRQRVTGGIEWDA---PKVVSYLKSL  150 (158)
T ss_dssp             -----SSSEEEEECTTS-BEEEEEESCCCTTS---HHHHHHHHTT
T ss_pred             -----CcceEEEEcCCC-CEEEEEeCCCccch---HHHHHHHHhh
Confidence                 147899999996 89999999866554   4555555443

>3fkf_A Thiol-disulfide oxidoreductase; structural genomics, PSI-2, structure initiative, midwest center for structural genomic oxidoreductase; 2.20A {Bacteroides fragilis}

Probab=99.60  E-value=5.3e-15  Score=123.47  Aligned_cols=135  Identities=13%  Similarity=-0.007  Sum_probs=109.2

Q ss_pred             CCCCCCCCCcccccCccccccchhhhcccccccccCCCceech--hhccCCCEEEEeecCCCCcchHHHHHHHHhccchh
Q 015842          182 PPVNEKVAPYSAIENISIQKLTPEYKIGMERLVKTKTPPMKAL--ELWRESPAVLLCIRRPGCIMCRAEAHQLYAKKPIF  259 (399)
Q Consensus       182 a~~~~~~apl~~L~~i~l~~l~~~~~~g~~~~v~~~G~~VsLs--dL~~~~pvVLvFyRg~gCP~Cr~el~~L~e~~pef  259 (399)
                      ...+|+.+|.+.+.+.                   +|++++++  ++ +++++||.|+ ..|||.|+.++..|.++..++
T Consensus         4 ~~~~g~~~p~~~l~~~-------------------~g~~~~l~~~~~-~gk~vll~F~-~~~C~~C~~~~~~l~~l~~~~   62 (148)
T 3fkf_A            4 KVTVGKSAPYFSLPNE-------------------KGEKLSRSAERF-RNRYLLLNFW-ASWCDPQPEANAELKRLNKEY   62 (148)
T ss_dssp             -CCTTSBCCCCCEEBT-------------------TSCEECTTSTTT-TTSEEEEEEE-CGGGCCCHHHHHHHHHHHHHT
T ss_pred             cccCCCcCCCeEeeCC-------------------CCCEEecccccc-CCcEEEEEEE-CCCCHHHHHHhHHHHHHHHHh
Confidence            5678999996666554                   49999999  86 6667777777 899999999999999999999


Q ss_pred             -hhcCCeEEEEecCChhhHHhhhcC-CCCCceeEecc---chHHHHHhCCCcccccccccccccCHHHHHHHHHHHhcCC
Q 015842          260 -DALGIQLFAVLHEYIESEVKDFWP-RYWGGVVVYDQ---GMEFFKALGGGKLLKDKFLSGFLLNPRAIANYKRARTLGV  334 (399)
Q Consensus       260 -~alGV~LVaIspE~~e~~ik~F~~-~~l~f~VLsDp---~r~lYkaLGl~r~~r~s~lsgfl~~P~v~~~~~rA~~~G~  334 (399)
                       ...|+.+|+|+.+.....++.|.. ..++|+++.|+   +..+.+.||+.                             
T Consensus        63 ~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~v~-----------------------------  113 (148)
T 3fkf_A           63 KKNKNFAMLGISLDIDREAWETAIKKDTLSWDQVCDFTGLSSETAKQYAIL-----------------------------  113 (148)
T ss_dssp             TTCTTEEEEEEECCSCHHHHHHHHHHTTCCSEEECCSCGGGCHHHHHTTCC-----------------------------
T ss_pred             cCCCCeEEEEEECCCCHHHHHHHHHHcCCCceEEEccCCcchHHHHhcCCC-----------------------------
Confidence             888999999998765545777774 77899999999   67888888763                             


Q ss_pred             ccccCCCCcccceEEEEecCCCcEEEEEecCCCCCCCCHHHHHHHHHhhh
Q 015842          335 EQNFKGEGEIKGGLFIVGRGRSGIAYQFIERNFGDWAPLAEVIEICTQLQ  384 (399)
Q Consensus       335 ~gn~~GD~~qLGGtFVId~gGg~I~yah~d~d~gDrad~eeVLaAl~~l~  384 (399)
                               ..|.+||||++| +|++.+.        +.+++.+.++.+-
T Consensus       114 ---------~~P~~~lid~~G-~i~~~~~--------~~~~l~~~l~~ll  145 (148)
T 3fkf_A          114 ---------TLPTNILLSPTG-KILARDI--------QGEALTGKLKELL  145 (148)
T ss_dssp             ---------SSSEEEEECTTS-BEEEESC--------CHHHHHHHHHHHC
T ss_pred             ---------CcCEEEEECCCC-eEEEecC--------CHHHHHHHHHHHH
Confidence                     147899999996 8998876        6788888777764

>3erw_A Sporulation thiol-disulfide oxidoreductase A; thioredoxin-like fold, RESA-like fold, dithiol, STOA, redox-active center; 2.50A {Bacillus subtilis} SCOP: c.47.1.0

Probab=99.60  E-value=6.1e-15  Score=122.38  Aligned_cols=137  Identities=17%  Similarity=0.118  Sum_probs=104.3

Q ss_pred             CcCCCCCCCCCCCCcccccCccccccchhhhcccccccccCCCceechhhccCCCEEEEeecCCCCcchHHHHHHHHhcc
Q 015842          177 GCIQAPPVNEKVAPYSAIENISIQKLTPEYKIGMERLVKTKTPPMKALELWRESPAVLLCIRRPGCIMCRAEAHQLYAKK  256 (399)
Q Consensus       177 g~~~~a~~~~~~apl~~L~~i~l~~l~~~~~~g~~~~v~~~G~~VsLsdL~~~~pvVLvFyRg~gCP~Cr~el~~L~e~~  256 (399)
                      |....++.+|+.+|.+.+.+.                   +|+.+++++  +++++||.|+ ..|||.|+.++..|.+..
T Consensus         3 ~~~~~~~~~g~~~p~~~l~~~-------------------~g~~~~l~~--~gk~~ll~f~-~~~C~~C~~~~~~l~~~~   60 (145)
T 3erw_A            3 GAAQAEEKQPAVPAVFLMKTI-------------------EGEDISIPN--KGQKTILHFW-TSWCPPCKKELPQFQSFY   60 (145)
T ss_dssp             ---------CCSCCEEEEECT-------------------TSCEEEESC--TTSEEEEEEE-CSSCHHHHHHHHHHHHHH
T ss_pred             CcccccccCCCcCCCceeecC-------------------CCCEEeHHH--CCCEEEEEEE-CCCCHHHHHHHHHHHHHH
Confidence            334556788999997776665                   489999999  7778888888 999999999999999999


Q ss_pred             chhhhcCCeEEEEecC----ChhhHHhhhcC-CCCCceeEeccchHHHHHhCCCcccccccccccccCHHHHHHHHHHHh
Q 015842          257 PIFDALGIQLFAVLHE----YIESEVKDFWP-RYWGGVVVYDQGMEFFKALGGGKLLKDKFLSGFLLNPRAIANYKRART  331 (399)
Q Consensus       257 pef~alGV~LVaIspE----~~e~~ik~F~~-~~l~f~VLsDp~r~lYkaLGl~r~~r~s~lsgfl~~P~v~~~~~rA~~  331 (399)
                      .++...++.+|+|+.+    +.+ .++.|.+ +.++|+++.|++..+++.||+.                          
T Consensus        61 ~~~~~~~~~~v~v~~d~~~~~~~-~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~--------------------------  113 (145)
T 3erw_A           61 DAHPSDSVKLVTVNLVNSEQNQQ-VVEDFIKANKLTFPIVLDSKGELMKEYHII--------------------------  113 (145)
T ss_dssp             HHCCCSSEEEEEEECGGGSSCHH-HHHHHHHHTTCCSCEEECSSSHHHHHTTCC--------------------------
T ss_pred             HHcCCCCEEEEEEEccCCcCCHH-HHHHHHHHcCCceeEEEcCchhHHHhcCcC--------------------------
Confidence            8888789999999874    343 4777775 7889999999999999988873                          


Q ss_pred             cCCccccCCCCcccceEEEEecCCCcEEEEEecCCCCCCCCHHHHHHHH
Q 015842          332 LGVEQNFKGEGEIKGGLFIVGRGRSGIAYQFIERNFGDWAPLAEVIEIC  380 (399)
Q Consensus       332 ~G~~gn~~GD~~qLGGtFVId~gGg~I~yah~d~d~gDrad~eeVLaAl  380 (399)
                                  ..|.+||||++| +|++.+.+.     .+.+++.+.+
T Consensus       114 ------------~~P~~~lid~~G-~i~~~~~g~-----~~~~~l~~~l  144 (145)
T 3erw_A          114 ------------TIPTSFLLNEKG-EIEKTKIGP-----MTAEQLKEWT  144 (145)
T ss_dssp             ------------EESEEEEECTTC-CEEEEEESC-----CCHHHHHHHH
T ss_pred             ------------ccCeEEEEcCCC-cEEEEEcCC-----cCHHHHHHhh
Confidence                        147899999996 899888764     4556665544

>3or5_A Thiol:disulfide interchange protein, thioredoxin protein; PSI-II, structural genomics, protein structure initiative; 1.66A {Chlorobaculum tepidum} SCOP: c.47.1.0

Probab=99.60  E-value=1.2e-14  Score=124.07  Aligned_cols=148  Identities=13%  Similarity=0.137  Sum_probs=112.2

Q ss_pred             CCCCCCCCCCcccccCccccccchhhhcccccccccCCCceechhhccCCCEEEEeecCCCCcchHHHHHHHHhccchhh
Q 015842          181 APPVNEKVAPYSAIENISIQKLTPEYKIGMERLVKTKTPPMKALELWRESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFD  260 (399)
Q Consensus       181 ~a~~~~~~apl~~L~~i~l~~l~~~~~~g~~~~v~~~G~~VsLsdL~~~~pvVLvFyRg~gCP~Cr~el~~L~e~~pef~  260 (399)
                      .+..+|+.+|.+.+.+.                   +|+++++.++ +++++||.|+ ..|||+|+.++..|.+...++.
T Consensus         6 ~~~~~g~~~p~~~l~~~-------------------~g~~~~l~~~-~gk~vlv~f~-~~~C~~C~~~~~~l~~l~~~~~   64 (165)
T 3or5_A            6 QADARPTPAPSFSGVTV-------------------DGKPFSSASL-KGKAYIVNFF-ATWCPPCRSEIPDMVQVQKTWA   64 (165)
T ss_dssp             -CCCCCCBCCCCEEECT-------------------TSCEEEGGGG-TTCEEEEEEE-CTTSHHHHHHHHHHHHHHHHHT
T ss_pred             hhhcCCCCCCCceeeCC-------------------CCCEechhHc-CCCEEEEEEE-cCcCHHHHHHHHHHHHHHHHhc
Confidence            45688889996666555                   4999999996 6677777777 9999999999999999999999


Q ss_pred             hcCCeEEEEecCChhhHHhhhcC-CCCCceeEeccchHHHHHhCCCcccccccccccccCHHHHHHHHHHHhcCCccccC
Q 015842          261 ALGIQLFAVLHEYIESEVKDFWP-RYWGGVVVYDQGMEFFKALGGGKLLKDKFLSGFLLNPRAIANYKRARTLGVEQNFK  339 (399)
Q Consensus       261 alGV~LVaIspE~~e~~ik~F~~-~~l~f~VLsDp~r~lYkaLGl~r~~r~s~lsgfl~~P~v~~~~~rA~~~G~~gn~~  339 (399)
                      ..|+.+|+|..+.....++.|.+ ..++|+++.|.+ .+.+.|+...           .                     
T Consensus        65 ~~~v~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-----------~---------------------  111 (165)
T 3or5_A           65 SRGFTFVGIAVNEQLPNVKNYMKTQGIIYPVMMATP-ELIRAFNGYI-----------D---------------------  111 (165)
T ss_dssp             TTTEEEEEEECSCCHHHHHHHHHHHTCCSCEEECCH-HHHHHHHTTS-----------T---------------------
T ss_pred             cCCeEEEEEECCCCHHHHHHHHHHcCCCCceEecCH-HHHHHHhhhh-----------c---------------------
Confidence            99999999997764444677764 678999999987 7777765420           0                     


Q ss_pred             CCCcccceEEEEecCCCcEEEEEecCCCCCCCCHHHHHHHHHhhhhhhc
Q 015842          340 GEGEIKGGLFIVGRGRSGIAYQFIERNFGDWAPLAEVIEICTQLQDQQR  388 (399)
Q Consensus       340 GD~~qLGGtFVId~gGg~I~yah~d~d~gDrad~eeVLaAl~~l~~~~~  388 (399)
                      ......|.+||||++| +|++.+.+.     .+.+++.+.++.+-.+..
T Consensus       112 ~~i~~~P~~~lid~~G-~i~~~~~g~-----~~~~~l~~~l~~~l~~~~  154 (165)
T 3or5_A          112 GGITGIPTSFVIDASG-NVSGVIVGP-----RSKADFDRIVKMALGAKA  154 (165)
T ss_dssp             TCSCSSSEEEEECTTS-BEEEEECSC-----CCHHHHHHHHHHHHC---
T ss_pred             cCCCCCCeEEEECCCC-cEEEEEcCC-----CCHHHHHHHHHHHHhhhc
Confidence            0112368999999996 899888764     367888888887754443

>1jfu_A Thiol:disulfide interchange protein TLPA; thioredoxin-like, double disulfide bridge, membrane protein; 1.60A {Bradyrhizobium japonicum} SCOP: c.47.1.10

Probab=99.59  E-value=7.4e-15  Score=129.13  Aligned_cols=145  Identities=13%  Similarity=0.059  Sum_probs=110.9

Q ss_pred             CCCCCCCCCcccccCccccccchhhhcccccccccCCCceechhhccCCCEEEEeecCCCCcchHHHHHHHHhccchhhh
Q 015842          182 PPVNEKVAPYSAIENISIQKLTPEYKIGMERLVKTKTPPMKALELWRESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDA  261 (399)
Q Consensus       182 a~~~~~~apl~~L~~i~l~~l~~~~~~g~~~~v~~~G~~VsLsdL~~~~pvVLvFyRg~gCP~Cr~el~~L~e~~pef~a  261 (399)
                      ...+|+.+|.+.+.+.                   +|++++++++ +++++||.|+ ..|||.|+.++..|.+++.++..
T Consensus        33 ~~~~g~~~p~f~l~~~-------------------~G~~~~l~~~-~gk~vll~F~-a~~C~~C~~~~~~l~~l~~~~~~   91 (186)
T 1jfu_A           33 MASAPLKLPDLAFEDA-------------------DGKPKKLSDF-RGKTLLVNLW-ATWCVPCRKEMPALDELQGKLSG   91 (186)
T ss_dssp             ECCSCCBCCCCEEECT-------------------TSCEEEGGGG-TTSEEEEEEE-CTTCHHHHHHHHHHHHHHHHHCB
T ss_pred             cccCCCcCCCcEeEcC-------------------CCCEeeHHHc-CCCEEEEEEE-eCCCHhHHHHHHHHHHHHHHhcc
Confidence            3467888886666554                   4999999996 6667777776 89999999999999999999988


Q ss_pred             cCCeEEEEecCCh-hhHHhhhcC-CCC-CceeEeccchHHHHHhCCCcccccccccccccCHHHHHHHHHHHhcCCcccc
Q 015842          262 LGIQLFAVLHEYI-ESEVKDFWP-RYW-GGVVVYDQGMEFFKALGGGKLLKDKFLSGFLLNPRAIANYKRARTLGVEQNF  338 (399)
Q Consensus       262 lGV~LVaIspE~~-e~~ik~F~~-~~l-~f~VLsDp~r~lYkaLGl~r~~r~s~lsgfl~~P~v~~~~~rA~~~G~~gn~  338 (399)
                      .|+++|+|+.+.. ...++.|.+ ..+ .|+++.|++..++++||+..                                
T Consensus        92 ~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~--------------------------------  139 (186)
T 1jfu_A           92 PNFEVVAINIDTRDPEKPKTFLKEANLTRLGYFNDQKAKVFQDLKAIG--------------------------------  139 (186)
T ss_dssp             TTEEEEEEECCCSCTTHHHHHHHHTTCCTTCCEECTTCHHHHHHHTTT--------------------------------
T ss_pred             CCcEEEEEECCCCCHHHHHHHHHHcCCCCCceEECCcchHHHHhcccc--------------------------------
Confidence            8999999997653 123566764 555 58999999999999887731                                


Q ss_pred             CCCCcccceEEEEecCCCcEEEEEecCCCCCCCCHHHHHHHHHhhhh
Q 015842          339 KGEGEIKGGLFIVGRGRSGIAYQFIERNFGDWAPLAEVIEICTQLQD  385 (399)
Q Consensus       339 ~GD~~qLGGtFVId~gGg~I~yah~d~d~gDrad~eeVLaAl~~l~~  385 (399)
                        +....|.+||||++| +|++.|.+...   .+.+++++.++.+..
T Consensus       140 --~~~~~P~~~lid~~G-~i~~~~~g~~~---~~~~~l~~~l~~ll~  180 (186)
T 1jfu_A          140 --RALGMPTSVLVDPQG-CEIATIAGPAE---WASEDALKLIRAATG  180 (186)
T ss_dssp             --CCSSSSEEEEECTTS-BEEEEEESCCC---TTSHHHHHHHHHHHC
T ss_pred             --ccCCCCEEEEECCCC-CEEEEEecCCc---cCHHHHHHHHHHHhc
Confidence              011258999999996 89999987532   235777777777653

>3kh7_A Thiol:disulfide interchange protein DSBE; TRX-like, thiol-disulfide exchange, cell inner membrane, CYT C-type biogenesis, disulfide bond; 1.75A {Pseudomonas aeruginosa} PDB: 3kh9_A

Probab=99.59  E-value=2.4e-14  Score=126.54  Aligned_cols=138  Identities=13%  Similarity=0.102  Sum_probs=106.4

Q ss_pred             CCCCCCCCCCcccccCccccccchhhhcccccccccCC--CceechhhccCCCEEEEeecCCCCcchHHHHHHHHhccch
Q 015842          181 APPVNEKVAPYSAIENISIQKLTPEYKIGMERLVKTKT--PPMKALELWRESPAVLLCIRRPGCIMCRAEAHQLYAKKPI  258 (399)
Q Consensus       181 ~a~~~~~~apl~~L~~i~l~~l~~~~~~g~~~~v~~~G--~~VsLsdL~~~~pvVLvFyRg~gCP~Cr~el~~L~e~~pe  258 (399)
                      .++.+|+.+|.|.|++.                   +|  +++++.++ +++++||.|+ ..|||+|+.++..|.+++.+
T Consensus        28 ~~~~~G~~~P~f~l~~~-------------------~g~~~~~~l~~~-~gk~vll~F~-a~~C~~C~~~~~~l~~l~~~   86 (176)
T 3kh7_A           28 PSALIGKPFPAFDLPSV-------------------QDPARRLTEADL-KGKPALVNVW-GTWCPSCRVEHPELTRLAEQ   86 (176)
T ss_dssp             TTTTTTSBCCCCEEEBS-------------------SCTTSEEEGGGG-CSSCEEEEEE-CTTCHHHHHHHHHHHHHHHT
T ss_pred             cccccCCcCCCcEeccc-------------------CCCCceecHHHh-CCCEEEEEEE-CCcCHHHHHHHHHHHHHHHC
Confidence            35678999997777665                   25  88999996 5678887777 88999999999999887654


Q ss_pred             hhhcCCeEEEEecCChhhHHhhhcC-CCCCce-eEeccchHHHHHhCCCcccccccccccccCHHHHHHHHHHHhcCCcc
Q 015842          259 FDALGIQLFAVLHEYIESEVKDFWP-RYWGGV-VVYDQGMEFFKALGGGKLLKDKFLSGFLLNPRAIANYKRARTLGVEQ  336 (399)
Q Consensus       259 f~alGV~LVaIspE~~e~~ik~F~~-~~l~f~-VLsDp~r~lYkaLGl~r~~r~s~lsgfl~~P~v~~~~~rA~~~G~~g  336 (399)
                          |+.+|+|+.+.....++.|.+ ..++|+ ++.|++..+.++||+.                               
T Consensus        87 ----~v~vv~vs~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~-------------------------------  131 (176)
T 3kh7_A           87 ----GVVIYGINYKDDNAAAIKWLNELHNPYLLSISDADGTLGLDLGVY-------------------------------  131 (176)
T ss_dssp             ----TCEEEEEEESCCHHHHHHHHHHTTCCCSEEEEETTCHHHHHHTCC-------------------------------
T ss_pred             ----CCEEEEEeCCCCHHHHHHHHHHcCCCCceEEECCcchHHHHcCCC-------------------------------
Confidence                899999995433334777775 678888 6999999999998873                               


Q ss_pred             ccCCCCcccceEEEEecCCCcEEEEEecCCCCCCCCHHHHHHHHHhhhhhh
Q 015842          337 NFKGEGEIKGGLFIVGRGRSGIAYQFIERNFGDWAPLAEVIEICTQLQDQQ  387 (399)
Q Consensus       337 n~~GD~~qLGGtFVId~gGg~I~yah~d~d~gDrad~eeVLaAl~~l~~~~  387 (399)
                             ..|.+||||++| +|++.+.+.     .+.+++.+.+..+-.+.
T Consensus       132 -------~~P~~~lid~~G-~i~~~~~g~-----~~~~~l~~~l~~~l~~l  169 (176)
T 3kh7_A          132 -------GAPETYLIDKQG-IIRHKIVGV-----VDQKVWREQLAPLYQQL  169 (176)
T ss_dssp             -------SSCEEEEECTTC-BEEEEEESC-----CCHHHHHHHTHHHHHHH
T ss_pred             -------CCCeEEEECCCC-eEEEEEcCC-----CCHHHHHHHHHHHHHHH
Confidence                   147899999996 899988765     35677776666654443

>3ia1_A THIO-disulfide isomerase/thioredoxin; oxidoreductase, PSI-2, NYSGXRC, structu genomics, protein structure initiative; 1.76A {Thermus thermophilus}

Probab=99.57  E-value=1.2e-14  Score=123.28  Aligned_cols=139  Identities=15%  Similarity=0.134  Sum_probs=110.2

Q ss_pred             CCCCCCCCCcccccCccccccchhhhcccccccccCCCceechhhccCCCEEEEeecCCCCcchHHHHHHHHhccchhhh
Q 015842          182 PPVNEKVAPYSAIENISIQKLTPEYKIGMERLVKTKTPPMKALELWRESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDA  261 (399)
Q Consensus       182 a~~~~~~apl~~L~~i~l~~l~~~~~~g~~~~v~~~G~~VsLsdL~~~~pvVLvFyRg~gCP~Cr~el~~L~e~~pef~a  261 (399)
                      ++.+|+.+|.+.+.+.                   +|+.+++.++ + +++||.|+ ..|||.|+.++..|.++..++  
T Consensus         4 ~l~~g~~~p~f~l~~~-------------------~g~~~~l~~~-~-k~vll~f~-~~~C~~C~~~~~~l~~l~~~~--   59 (154)
T 3ia1_A            4 AVKPGEPLPDFLLLDP-------------------KGQPVTPATV-S-KPAVIVFW-ASWCTVCKAEFPGLHRVAEET--   59 (154)
T ss_dssp             CCCSBEECCCCCEECT-------------------TSCEECTTTS-C-SSEEEEEE-CTTCHHHHHHHHHHHHHHHHH--
T ss_pred             cCCCCCcCCceEEECC-------------------CCCEechHHc-C-CeEEEEEE-cccChhHHHHHHHHHHHHHHc--
Confidence            6788899996666555                   4999999996 5 88888888 889999999999999998888  


Q ss_pred             cCCeEEEEec---CChhhHHhhhcC-CCCCceeEec---cchHHHHHhCCCcccccccccccccCHHHHHHHHHHHhcCC
Q 015842          262 LGIQLFAVLH---EYIESEVKDFWP-RYWGGVVVYD---QGMEFFKALGGGKLLKDKFLSGFLLNPRAIANYKRARTLGV  334 (399)
Q Consensus       262 lGV~LVaIsp---E~~e~~ik~F~~-~~l~f~VLsD---p~r~lYkaLGl~r~~r~s~lsgfl~~P~v~~~~~rA~~~G~  334 (399)
                       ++++|+|+.   ++.+ .++.|.+ ..++|+++.|   ....+++.||+.                             
T Consensus        60 -~v~~v~v~~d~~~~~~-~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~v~-----------------------------  108 (154)
T 3ia1_A           60 -GVPFYVISREPRDTRE-VVLEYMKTYPRFIPLLASDRDRPHEVAARFKVL-----------------------------  108 (154)
T ss_dssp             -CCCEEEEECCTTCCHH-HHHHHHTTCTTEEECBCCSSCCHHHHHTTSSBC-----------------------------
T ss_pred             -CCeEEEEeCCCcccHH-HHHHHHHHcCCCcccccccccchHHHHHHhCCC-----------------------------
Confidence             899999998   5554 4777775 6789999998   667777766652                             


Q ss_pred             ccccCCCCcccceEEEEecCCCcEEEEEecCCCCCCCCHHHHHHHHHhhhhhhccc
Q 015842          335 EQNFKGEGEIKGGLFIVGRGRSGIAYQFIERNFGDWAPLAEVIEICTQLQDQQRDQ  390 (399)
Q Consensus       335 ~gn~~GD~~qLGGtFVId~gGg~I~yah~d~d~gDrad~eeVLaAl~~l~~~~~~~  390 (399)
                               ..|.+||||++| +|++.+.+.     .+.+++.+.++++..++..+
T Consensus       109 ---------~~P~~~lid~~G-~i~~~~~g~-----~~~~~l~~~l~~~~~~~~~~  149 (154)
T 3ia1_A          109 ---------GQPWTFVVDREG-KVVALFAGR-----AGREALLDALLLAGADLEGH  149 (154)
T ss_dssp             ---------SSCEEEEECTTS-EEEEEEESB-----CCHHHHHHHHHHTTCCC---
T ss_pred             ---------cccEEEEECCCC-CEEEEEcCC-----CCHHHHHHHHHhccCccccc
Confidence                     247899999996 899988753     56889999998876555443

>3lwa_A Secreted thiol-disulfide isomerase; thioredoxin, PSI, MCSG, structural genomics, midwest center for structural genomics; 1.75A {Corynebacterium glutamicum}

Probab=99.57  E-value=2.2e-14  Score=126.09  Aligned_cols=144  Identities=15%  Similarity=0.215  Sum_probs=111.3

Q ss_pred             CCCCCCCCCcccccCccccccchhhhcccccccccCCCceechhhccCCCEEEEeecCCCCcchHHHHHHHHhccchhhh
Q 015842          182 PPVNEKVAPYSAIENISIQKLTPEYKIGMERLVKTKTPPMKALELWRESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDA  261 (399)
Q Consensus       182 a~~~~~~apl~~L~~i~l~~l~~~~~~g~~~~v~~~G~~VsLsdL~~~~pvVLvFyRg~gCP~Cr~el~~L~e~~pef~a  261 (399)
                      ++..|+.+|.|.|++..                 .+|++++++++ +++++||.|+ ..|||.|+.++..|.+++.++.+
T Consensus        30 ~~~~g~~~p~f~l~~~~-----------------~~g~~~~l~~~-~gk~vlv~F~-a~~C~~C~~~~~~l~~l~~~~~~   90 (183)
T 3lwa_A           30 DEADRQQLPDIGGDSLM-----------------EEGTQINLSDF-ENQVVILNAW-GQWCAPCRSESDDLQIIHEELQA   90 (183)
T ss_dssp             CGGGCCCCCCCEEEBSS-----------------STTCEEEGGGG-TTSEEEEEEE-CTTCHHHHHHHHHHHHHHHHHHH
T ss_pred             ccccCCCCCceeccccc-----------------cCCcEecHHHh-CCCEEEEEEE-CCcCHhHHHHHHHHHHHHHHHHh
Confidence            45677888866555541                 14999999996 6667777666 79999999999999999999999


Q ss_pred             cCC------eEEEEecCC-hhhHHhhhcC-CCCCceeEeccchHHHHHhCCCcccccccccccccCHHHHHHHHHHHhcC
Q 015842          262 LGI------QLFAVLHEY-IESEVKDFWP-RYWGGVVVYDQGMEFFKALGGGKLLKDKFLSGFLLNPRAIANYKRARTLG  333 (399)
Q Consensus       262 lGV------~LVaIspE~-~e~~ik~F~~-~~l~f~VLsDp~r~lYkaLGl~r~~r~s~lsgfl~~P~v~~~~~rA~~~G  333 (399)
                      .|+      ++|+|+.+. ....++.|.+ ..++|+++.|++..+.++||.-.                           
T Consensus        91 ~~~~~~~~v~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~---------------------------  143 (183)
T 3lwa_A           91 AGNGDTPGGTVLGINVRDYSRDIAQDFVTDNGLDYPSIYDPPFMTAASLGGVP---------------------------  143 (183)
T ss_dssp             CC---CCSEEEEEEECSCCCHHHHHHHHHHTTCCSCEEECTTCGGGGGTTTCC---------------------------
T ss_pred             cCCCccCCcEEEEEECCCCCHHHHHHHHHHcCCCccEEECCcchHHHHhccCC---------------------------
Confidence            999      999999877 2334777775 78899999999988877665310                           


Q ss_pred             CccccCCCCcccceEEEEecCCCcEEEEEecCCCCCCCCHHHHHHHHHhhhh
Q 015842          334 VEQNFKGEGEIKGGLFIVGRGRSGIAYQFIERNFGDWAPLAEVIEICTQLQD  385 (399)
Q Consensus       334 ~~gn~~GD~~qLGGtFVId~gGg~I~yah~d~d~gDrad~eeVLaAl~~l~~  385 (399)
                              ....|.+||||++| +|++.|...     .+.+++.+.++.+..
T Consensus       144 --------v~~~P~~~lid~~G-~i~~~~~g~-----~~~~~l~~~l~~ll~  181 (183)
T 3lwa_A          144 --------ASVIPTTIVLDKQH-RPAAVFLRE-----VTSKDVLDVALPLVD  181 (183)
T ss_dssp             --------TTCCSEEEEECTTS-CEEEEECSC-----CCHHHHHHHHHHHHH
T ss_pred             --------CCCCCeEEEECCCC-cEEEEEcCC-----CCHHHHHHHHHHHHh
Confidence                    01258899999996 899988754     478899888888754

>2cvb_A Probable thiol-disulfide isomerase/thioredoxin; redox protein, structural genomics, riken struc genomics/proteomics initiative, RSGI; 1.80A {Thermus thermophilus} SCOP: c.47.1.10 PDB: 2ywo_A

Probab=99.57  E-value=1.3e-14  Score=128.02  Aligned_cols=145  Identities=10%  Similarity=0.033  Sum_probs=110.7

Q ss_pred             CCCCCCCCCCcccccCccccccchhhhcccccccccCCCceechhhccCCCEEEEeecCCCCcchHHHHHHHHhccchhh
Q 015842          181 APPVNEKVAPYSAIENISIQKLTPEYKIGMERLVKTKTPPMKALELWRESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFD  260 (399)
Q Consensus       181 ~a~~~~~~apl~~L~~i~l~~l~~~~~~g~~~~v~~~G~~VsLsdL~~~~pvVLvFyRg~gCP~Cr~el~~L~e~~pef~  260 (399)
                      ..+.+|+.+|.|.|.+.                   +|++++++++ +++++||.|+ ..|||.|+.++..|.++..++.
T Consensus         5 ~~~~~g~~~p~f~l~~~-------------------~G~~~~l~~~-~gk~vlv~F~-a~~C~~C~~~~~~l~~l~~~~~   63 (188)
T 2cvb_A            5 PELPLESPLIDAELPDP-------------------RGGRYRLSQF-HEPLLAVVFM-CNHCPYVKGSIGELVALAERYR   63 (188)
T ss_dssp             CCCCTTCBCCCCEEECT-------------------TSCEEEGGGC-CSSEEEEEEE-CSSCHHHHTTHHHHHHHHHHTT
T ss_pred             CcCCCCCCCCCceeecC-------------------CCCEEeHHHh-CCCEEEEEEE-CCCCccHHHHHHHHHHHHHHhh
Confidence            35678888997666655                   4999999996 6677787777 7899999999999999999998


Q ss_pred             hcCCeEEEEec--------CChhhHHhhhcC-CCCCceeEeccchHHHHHhCCCcccccccccccccCHHHHHHHHHHHh
Q 015842          261 ALGIQLFAVLH--------EYIESEVKDFWP-RYWGGVVVYDQGMEFFKALGGGKLLKDKFLSGFLLNPRAIANYKRART  331 (399)
Q Consensus       261 alGV~LVaIsp--------E~~e~~ik~F~~-~~l~f~VLsDp~r~lYkaLGl~r~~r~s~lsgfl~~P~v~~~~~rA~~  331 (399)
                      .. +++|+|+.        ++.+ .++.|.+ ..++|+++.|++..+++.||+.                          
T Consensus        64 ~~-~~~v~v~~d~~~~~~~d~~~-~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~--------------------------  115 (188)
T 2cvb_A           64 GK-VAFVGINANDYEKYPEDAPE-KMAAFAEEHGIFFPYLLDETQEVAKAYRAL--------------------------  115 (188)
T ss_dssp             TT-EEEEEEECCCTTTCGGGSHH-HHHHHHHHHTCCSCEEECSSSHHHHHTTCC--------------------------
T ss_pred             cC-eEEEEEEcCccccccccCHH-HHHHHHHHhCCCceEEECCcchHHHHcCCC--------------------------
Confidence            87 99999997        4444 3777775 6789999999999999988874                          


Q ss_pred             cCCccccCCCCcccceEEEEecCCCcEEEEEecCCC---CCCCCHHHHHHHHHhhhhhh
Q 015842          332 LGVEQNFKGEGEIKGGLFIVGRGRSGIAYQFIERNF---GDWAPLAEVIEICTQLQDQQ  387 (399)
Q Consensus       332 ~G~~gn~~GD~~qLGGtFVId~gGg~I~yah~d~d~---gDrad~eeVLaAl~~l~~~~  387 (399)
                                  ..|.+||||++| +|++.....++   ....+.++|.++++.+....
T Consensus       116 ------------~~P~~~lid~~G-~i~~~g~~~~~~~~~g~~~~~~l~~~i~~ll~~~  161 (188)
T 2cvb_A          116 ------------RTPEVFLFDERR-LLRYHGRVNDNPKDPSKVQSHDLEAAIEALLRGE  161 (188)
T ss_dssp             ------------EESEEEEECTTC-BEEEEECSSSCTTCGGGCCCCHHHHHHHHHHTTC
T ss_pred             ------------CCCeEEEECCCC-cEEEEEecCCccccccccCHHHHHHHHHHHHcCC
Confidence                        136899999997 89887332221   11235577777777775544

>3eur_A Uncharacterized protein; PSI2,MCSG, conserved protein, structural genomics, protein S initiative, midwest center for structural genomics; HET: MSE; 1.30A {Bacteroides fragilis}

Probab=99.56  E-value=2.4e-14  Score=120.64  Aligned_cols=132  Identities=12%  Similarity=0.041  Sum_probs=101.6

Q ss_pred             CCCCCCCCCcccccCccccccchhhhcccccccccCCCceechhhccCCCEEEEeecCCCCcchHHHHHHHHh---ccch
Q 015842          182 PPVNEKVAPYSAIENISIQKLTPEYKIGMERLVKTKTPPMKALELWRESPAVLLCIRRPGCIMCRAEAHQLYA---KKPI  258 (399)
Q Consensus       182 a~~~~~~apl~~L~~i~l~~l~~~~~~g~~~~v~~~G~~VsLsdL~~~~pvVLvFyRg~gCP~Cr~el~~L~e---~~pe  258 (399)
                      ...+|+.+|.|.+++.                   +|++++++++ +++++||.|+ ..|||.|+.++..|.+   ++.+
T Consensus         4 ~~~~G~~ap~f~l~~~-------------------~g~~~~l~~~-~gk~vll~F~-a~wC~~C~~~~~~l~~~~~l~~~   62 (142)
T 3eur_A            4 KNRLGTKALNFTYTLD-------------------SGVKGTLYQF-PAEYTLLFIN-NPGCHACAEMIEGLKASPVINGF   62 (142)
T ss_dssp             TTCTTSBCCCCEEEET-------------------TSCEEETTTC-CCSEEEEEEC-CSSSHHHHHHHHHHHHCHHHHHH
T ss_pred             hhcCCCccCCcEEEcC-------------------CCCEeeHHHc-CCCEEEEEEE-CCCCccHHHHHHHHhhhHHHHHH
Confidence            4578999997766654                   4999999996 5567777766 9999999999999999   8999


Q ss_pred             hhhcCCeEEEEecCChhhHHhhhcC-CCCCceeEeccchH--HHHHhCCCcccccccccccccCHHHHHHHHHHHhcCCc
Q 015842          259 FDALGIQLFAVLHEYIESEVKDFWP-RYWGGVVVYDQGME--FFKALGGGKLLKDKFLSGFLLNPRAIANYKRARTLGVE  335 (399)
Q Consensus       259 f~alGV~LVaIspE~~e~~ik~F~~-~~l~f~VLsDp~r~--lYkaLGl~r~~r~s~lsgfl~~P~v~~~~~rA~~~G~~  335 (399)
                      +++.|+.+|+|+.+......+.|.+ ..++|+.+.|++..  +.+.||+                               
T Consensus        63 ~~~~~~~vi~i~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~v-------------------------------  111 (142)
T 3eur_A           63 TAAKKLKVLSIYPDEELDEWKKHRNDFAKEWTNGYDKELVIKNKNLYDL-------------------------------  111 (142)
T ss_dssp             HHTTSEEEEEEECSSCHHHHHHHGGGSCTTSEEEECTTCHHHHTTCSCC-------------------------------
T ss_pred             hccCCeEEEEEEcCCCHHHHHHHHHhcccccccccCccchhhhhhhcCC-------------------------------
Confidence            9999999999999876555677664 56788999998865  3333322                               


Q ss_pred             cccCCCCcccceEEEEecCCCcEEEEEecCCCCCCCCHHHHHHHHH
Q 015842          336 QNFKGEGEIKGGLFIVGRGRSGIAYQFIERNFGDWAPLAEVIEICT  381 (399)
Q Consensus       336 gn~~GD~~qLGGtFVId~gGg~I~yah~d~d~gDrad~eeVLaAl~  381 (399)
                             ...|.+||||++| +|++.+..        .++|.+.++
T Consensus       112 -------~~~P~~~lid~~G-~i~~~~~~--------~~~l~~~l~  141 (142)
T 3eur_A          112 -------RAIPTLYLLDKNK-TVLLKDAT--------LQKVEQYLA  141 (142)
T ss_dssp             -------TTCSEEEEECTTC-BEEEEEEC--------HHHHHHHHH
T ss_pred             -------CcCCeEEEECCCC-cEEecCCC--------HHHHHHHHh
Confidence                   1258999999996 89998763        456555543

>3lor_A Thiol-disulfide isomerase and thioredoxins; PSI, MCSG, structural genomics, midwest CE structural genomics; HET: MSE; 2.20A {Corynebacterium glutamicum}

Probab=99.55  E-value=3.5e-14  Score=120.85  Aligned_cols=122  Identities=15%  Similarity=0.034  Sum_probs=98.9

Q ss_pred             CCCceechhhccCCCEEEEeecCCCCcchHHH-HHHHHhccchhhhcCCeEEEEec-------CChhhHHhhhcC-CCCC
Q 015842          217 KTPPMKALELWRESPAVLLCIRRPGCIMCRAE-AHQLYAKKPIFDALGIQLFAVLH-------EYIESEVKDFWP-RYWG  287 (399)
Q Consensus       217 ~G~~VsLsdL~~~~pvVLvFyRg~gCP~Cr~e-l~~L~e~~pef~alGV~LVaIsp-------E~~e~~ik~F~~-~~l~  287 (399)
                      +|++++++++ +++++||.|+. .|||.|+.+ +..|.+++.++...|+.+|+|+.       ++.+. ++.|.+ ..++
T Consensus        19 ~g~~~~l~~~-~gk~vlv~F~a-~~C~~C~~e~~~~l~~l~~~~~~~~v~~v~v~~~~~~~~~~~~~~-~~~~~~~~~~~   95 (160)
T 3lor_A           19 NHEGLSNEDL-RGKVVVVEVFQ-MLCPGCVNHGVPQAQKIHRMIDESQVQVIGLHSVFEHHDVMTPEA-LKVFIDEFGIK   95 (160)
T ss_dssp             SSCCCCHHHH-TTSEEEEEEEC-TTCHHHHHTHHHHHHHHHHHSCTTTEEEEEEECCCSCGGGSCHHH-HHHHHHHTTCC
T ss_pred             CCCccCHHHh-CCCEEEEEEEc-CCCcchhhhhhHHHHHHHHHhCcCCcEEEEEeccccccccCCHHH-HHHHHHHcCCC
Confidence            4899999996 56677766665 599999996 99999999999988999999995       45543 777775 7789


Q ss_pred             ceeEeccchH------HHHHhCCCcccccccccccccCHHHHHHHHHHHhcCCccccCCCCcccceEEEEecCCCcEEEE
Q 015842          288 GVVVYDQGME------FFKALGGGKLLKDKFLSGFLLNPRAIANYKRARTLGVEQNFKGEGEIKGGLFIVGRGRSGIAYQ  361 (399)
Q Consensus       288 f~VLsDp~r~------lYkaLGl~r~~r~s~lsgfl~~P~v~~~~~rA~~~G~~gn~~GD~~qLGGtFVId~gGg~I~ya  361 (399)
                      |+++.|++..      ++++||+.                                      ..|.+||||++| +|++.
T Consensus        96 ~~~~~d~~~~~~~~~~~~~~~~v~--------------------------------------~~P~~~lid~~G-~i~~~  136 (160)
T 3lor_A           96 FPVAVDMPREGQRIPSTMKKYRLE--------------------------------------GTPSIILADRKG-RIRQV  136 (160)
T ss_dssp             SCEEEECCCTTCSSCHHHHHTTCC--------------------------------------SSSEEEEECTTS-BEEEE
T ss_pred             CcEEECCccccchhhhHHHhcccC--------------------------------------ccceEEEECCCC-cEEEE
Confidence            9999999988      88888763                                      147899999996 89998


Q ss_pred             EecCCCCCCCCHHHHHHHHHhhhh
Q 015842          362 FIERNFGDWAPLAEVIEICTQLQD  385 (399)
Q Consensus       362 h~d~d~gDrad~eeVLaAl~~l~~  385 (399)
                      |.+.     .+.+++.+.++.+-.
T Consensus       137 ~~g~-----~~~~~l~~~i~~ll~  155 (160)
T 3lor_A          137 QFGQ-----VDDFVLGLLLGSLLS  155 (160)
T ss_dssp             EESC-----CCHHHHHHHHHHHHT
T ss_pred             ecCc-----CCHHHHHHHHHHHHh
Confidence            8864     457788888877653

>2obi_A PHGPX, GPX-4, phospholipid hydroperoxide glutathione peroxidase (GPX4); human GPX4, selenoprotein, thioredoxin-fold, anti-oxidatve defense system; 1.55A {Homo sapiens}

Probab=99.54  E-value=3e-14  Score=125.97  Aligned_cols=155  Identities=9%  Similarity=0.018  Sum_probs=104.4

Q ss_pred             ccCcCCCCCCCCCCCCcccccCccccccchhhhcccccccccCCCceechhhccCCCEEEEeecCCCCcchHHHHHHHHh
Q 015842          175 VCGCIQAPPVNEKVAPYSAIENISIQKLTPEYKIGMERLVKTKTPPMKALELWRESPAVLLCIRRPGCIMCRAEAHQLYA  254 (399)
Q Consensus       175 a~g~~~~a~~~~~~apl~~L~~i~l~~l~~~~~~g~~~~v~~~G~~VsLsdL~~~~pvVLvFyRg~gCP~Cr~el~~L~e  254 (399)
                      +|+....++++|+.+|.|.|++.                   +|++++++++ +++++|| +|-..|||.|+.++..|.+
T Consensus        13 ~~~~~~~~~~~g~~~p~f~l~~~-------------------~G~~~~l~~~-~gk~vll-~F~atwC~~C~~~~~~l~~   71 (183)
T 2obi_A           13 ACCASRDDWRCARSMHEFSAKDI-------------------DGHMVNLDKY-RGFVCIV-TNVASQCGKTEVNYTQLVD   71 (183)
T ss_dssp             ------CCGGGCCSGGGCEEEBT-------------------TSCEEEGGGG-TTSEEEE-EEECSSSTTHHHHHHHHHH
T ss_pred             hhhhcccCCcccCcccceEEEcC-------------------CCCEeeHHHc-CCCEEEE-EEeCCCCCCcHHHHHHHHH
Confidence            45556677889999997776665                   4999999996 5555554 5557899999999999999


Q ss_pred             ccchhhhcCCeEEEEecC--------ChhhHHhhhcC-CCCCceeEe--ccchH----HHHHhCCCcccccccccccccC
Q 015842          255 KKPIFDALGIQLFAVLHE--------YIESEVKDFWP-RYWGGVVVY--DQGME----FFKALGGGKLLKDKFLSGFLLN  319 (399)
Q Consensus       255 ~~pef~alGV~LVaIspE--------~~e~~ik~F~~-~~l~f~VLs--Dp~r~----lYkaLGl~r~~r~s~lsgfl~~  319 (399)
                      ++.++.+.|+++|+|+.+        +++. ++.|.+ ..++|+++.  |++..    +|+.|+-..             
T Consensus        72 l~~~~~~~~v~vv~vs~d~~~~~e~~~~~~-~~~~~~~~~~~~p~~~~~d~~~~~~~~~~~~l~~~~-------------  137 (183)
T 2obi_A           72 LHARYAECGLRILAFPCNQFGKQEPGSNEE-IKEFAAGYNVKFDMFSKICVNGDDAHPLWKWMKIQP-------------  137 (183)
T ss_dssp             HHHHHGGGTEEEEEEECCCSTTCCCSCHHH-HHHHHHTTTCCSEEBCCCCCSSTTSCHHHHHHHTST-------------
T ss_pred             HHHHHhcCCeEEEEEECCCCCCCCCCCHHH-HHHHHHHcCCCceEEeeeccCCcchhHHHHHhhccC-------------
Confidence            999999999999999853        4443 777764 678999997  66553    444332110             


Q ss_pred             HHHHHHHHHHHhcCCccccCCCCcccceEEEEecCCCcEEEEEecCCCCCCCCHHHHHHHHHhh
Q 015842          320 PRAIANYKRARTLGVEQNFKGEGEIKGGLFIVGRGRSGIAYQFIERNFGDWAPLAEVIEICTQL  383 (399)
Q Consensus       320 P~v~~~~~rA~~~G~~gn~~GD~~qLGGtFVId~gGg~I~yah~d~d~gDrad~eeVLaAl~~l  383 (399)
                      +          ..|+.+   .+....|.+||||++| +|++.|...     .++++|.+.++.+
T Consensus       138 ~----------~~g~~~---~~i~~~P~~~lid~~G-~i~~~~~g~-----~~~~~l~~~i~~l  182 (183)
T 2obi_A          138 K----------GKGILG---NAIKWNFTKFLIDKNG-CVVKRYGPM-----EEPLVIEKDLPHY  182 (183)
T ss_dssp             T----------TCCSSS---SSCCSTTCEEEECTTS-CEEEEECTT-----SCTHHHHTTSGGG
T ss_pred             C----------CCCccc---ccccccceEEEECCCC-CEEEEeCCC-----CCHHHHHHHHHHh
Confidence            0          001111   0122368999999997 899988753     3456776666543

>4fo5_A Thioredoxin-like protein; AHPC/TSA family protein, structural genomics, joint center F structural genomics, JCSG; 2.02A {Parabacteroides distasonis}

Probab=99.54  E-value=2.7e-14  Score=120.45  Aligned_cols=133  Identities=13%  Similarity=-0.039  Sum_probs=98.4

Q ss_pred             CCCCCCCCCCCcccccCccccccchhhhcccccccccCCCceechhhccCCCEEEEeecCCCCcchHHHHHHHHhccchh
Q 015842          180 QAPPVNEKVAPYSAIENISIQKLTPEYKIGMERLVKTKTPPMKALELWRESPAVLLCIRRPGCIMCRAEAHQLYAKKPIF  259 (399)
Q Consensus       180 ~~a~~~~~~apl~~L~~i~l~~l~~~~~~g~~~~v~~~G~~VsLsdL~~~~pvVLvFyRg~gCP~Cr~el~~L~e~~pef  259 (399)
                      ...+.+|+.+|.|.+ +.                   +|++++++++ +++++||.| -..||+.|+.++..|.+++.++
T Consensus         4 ~~~l~~G~~~P~f~l-~~-------------------~g~~~~l~~~-~gk~vll~F-~a~wC~~C~~~~~~l~~l~~~~   61 (143)
T 4fo5_A            4 TEGVNPGDLAPRIEF-LG-------------------NDAKASFHNQ-LGRYTLLNF-WAAYDAESRARNVQLANEVNKF   61 (143)
T ss_dssp             CBSSSTTSBCCCCCC-------------------------CCCSCCS-SCCEEEEEE-ECTTCHHHHHHHHHHHHHHTTS
T ss_pred             ccccCCcccCCceEE-cC-------------------CCCEEEHHHh-CCCEEEEEE-EcCcCHHHHHHHHHHHHHHHHh
Confidence            346788999996666 44                   4899999996 555655555 4889999999999999999999


Q ss_pred             hhcCCeEEEEecCChhhHHhhhcC-CCCCc-eeEeccc---hHHHHHhCCCcccccccccccccCHHHHHHHHHHHhcCC
Q 015842          260 DALGIQLFAVLHEYIESEVKDFWP-RYWGG-VVVYDQG---MEFFKALGGGKLLKDKFLSGFLLNPRAIANYKRARTLGV  334 (399)
Q Consensus       260 ~alGV~LVaIspE~~e~~ik~F~~-~~l~f-~VLsDp~---r~lYkaLGl~r~~r~s~lsgfl~~P~v~~~~~rA~~~G~  334 (399)
                      .+.|+.+|+|+.+......+.|.+ ..++| ++++|+.   ..+++.||+.                             
T Consensus        62 ~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~v~-----------------------------  112 (143)
T 4fo5_A           62 GPDKIAMCSISMDEKESIFTETVKIDKLDLSTQFHEGLGKESELYKKYDLR-----------------------------  112 (143)
T ss_dssp             CTTTEEEEEEECCSCHHHHHHHHHHHTCCGGGEEECTTGGGSHHHHHTTGG-----------------------------
T ss_pred             CcCCEEEEEEEccCCHHHHHHHHHHhCCCCceeeecccccchHHHHHcCCC-----------------------------
Confidence            988999999998755444667764 67888 8899984   5677766652                             


Q ss_pred             ccccCCCCcccceEEEEecCCCcEEEEEecCCCCCCCCHHHHHHHHH
Q 015842          335 EQNFKGEGEIKGGLFIVGRGRSGIAYQFIERNFGDWAPLAEVIEICT  381 (399)
Q Consensus       335 ~gn~~GD~~qLGGtFVId~gGg~I~yah~d~d~gDrad~eeVLaAl~  381 (399)
                               .+|.+||||++| +|++.+.        ..+++-+.++
T Consensus       113 ---------~~P~~~lid~~G-~i~~~~~--------~~~~l~~~l~  141 (143)
T 4fo5_A          113 ---------KGFKNFLINDEG-VIIAANV--------TPEKLTEILK  141 (143)
T ss_dssp             ---------GCCCEEEECTTS-BEEEESC--------CHHHHHHHHT
T ss_pred             ---------CCCcEEEECCCC-EEEEccC--------CHHHHHHHHH
Confidence                     147899999996 8988764        2456555554

>3raz_A Thioredoxin-related protein; structural genomics, PSI-2, protein structure initiative; 2.00A {Neisseria meningitidis serogroup B}

Probab=99.54  E-value=4.3e-14  Score=120.26  Aligned_cols=130  Identities=10%  Similarity=0.092  Sum_probs=100.6

Q ss_pred             CCCceechhhccCCCEEEEeecCCCCcchHHHHHHHHhccchhhhcCCeEEEEecCChhhHHhhhcC-CCCCceeEeccc
Q 015842          217 KTPPMKALELWRESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLHEYIESEVKDFWP-RYWGGVVVYDQG  295 (399)
Q Consensus       217 ~G~~VsLsdL~~~~pvVLvFyRg~gCP~Cr~el~~L~e~~pef~alGV~LVaIspE~~e~~ik~F~~-~~l~f~VLsDp~  295 (399)
                      +|++++++++ +++++||.|+ ..|||.|+.++..|.+++.+++..|+.+|+|+.+..+. ++.|.+ ..++|+++.|.+
T Consensus        13 ~G~~~~l~~~-~gk~vlv~F~-a~wC~~C~~~~~~l~~l~~~~~~~~v~vv~v~~d~~~~-~~~~~~~~~~~~~~~~~~~   89 (151)
T 3raz_A           13 DNTPQSLQSL-KAPVRIVNLW-ATWCGPCRKEMPAMSKWYKAQKKGSVDMVGIALDTSDN-IGNFLKQTPVSYPIWRYTG   89 (151)
T ss_dssp             TCCEECGGGC-CSSEEEEEEE-CTTCHHHHHHHHHHHHHHHTSCTTTEEEEEEESSCHHH-HHHHHHHSCCSSCEEEECC
T ss_pred             CCCEecHHHh-CCCEEEEEEE-cCcCHHHHHHHHHHHHHHHHhccCCeEEEEEECCChHH-HHHHHHHcCCCCceEecCc
Confidence            6999999996 6666666666 89999999999999999999988999999999988765 788875 788999999874


Q ss_pred             ---hHHHHHhCCCcccccccccccccCHHHHHHHHHHHhcCCccccCCCCcccceEEEEecCCCcEEEEEecCCCCCCCC
Q 015842          296 ---MEFFKALGGGKLLKDKFLSGFLLNPRAIANYKRARTLGVEQNFKGEGEIKGGLFIVGRGRSGIAYQFIERNFGDWAP  372 (399)
Q Consensus       296 ---r~lYkaLGl~r~~r~s~lsgfl~~P~v~~~~~rA~~~G~~gn~~GD~~qLGGtFVId~gGg~I~yah~d~d~gDrad  372 (399)
                         ..++++||..                                    ....|.+||||++| +|++.|.+.     .+
T Consensus        90 ~~~~~~~~~~~~~------------------------------------v~~~P~~~lid~~G-~i~~~~~g~-----~~  127 (151)
T 3raz_A           90 ANSRNFMKTYGNT------------------------------------VGVLPFTVVEAPKC-GYRQTITGE-----VN  127 (151)
T ss_dssp             SCHHHHHHTTTCC------------------------------------SCCSSEEEEEETTT-TEEEECCSC-----CC
T ss_pred             cchHHHHHHhCCc------------------------------------cCCCCEEEEECCCC-cEEEEECCC-----CC
Confidence               4456655521                                    01257899999996 899887654     46


Q ss_pred             HHHHHHHHHhhhhhhcccc
Q 015842          373 LAEVIEICTQLQDQQRDQS  391 (399)
Q Consensus       373 ~eeVLaAl~~l~~~~~~~~  391 (399)
                      .+++.+.++.+...+....
T Consensus       128 ~~~l~~~l~~l~~~~~~~~  146 (151)
T 3raz_A          128 EKSLTDAVKLAHSKCREGH  146 (151)
T ss_dssp             HHHHHHHHHHHHTC-----
T ss_pred             HHHHHHHHHHHHHHhhccc
Confidence            7888889888876665443

>2ls5_A Uncharacterized protein; structural genomics, unknown function, thioredoxin-like, NEW structural genomics research consortium; NMR {Bacteroides thetaiotaomicron}

Probab=99.29  E-value=6.3e-16  Score=132.43  Aligned_cols=144  Identities=13%  Similarity=0.043  Sum_probs=109.6

Q ss_pred             CCCCCCCCCcccccCccccccchhhhcccccccccCCCceechhhccCCCEEEEeecCCCCcchHHHHHHHHh-ccchhh
Q 015842          182 PPVNEKVAPYSAIENISIQKLTPEYKIGMERLVKTKTPPMKALELWRESPAVLLCIRRPGCIMCRAEAHQLYA-KKPIFD  260 (399)
Q Consensus       182 a~~~~~~apl~~L~~i~l~~l~~~~~~g~~~~v~~~G~~VsLsdL~~~~pvVLvFyRg~gCP~Cr~el~~L~e-~~pef~  260 (399)
                      .+.+|+.+|.+.|.+.                   +|++++++++ +++++||.|+ ..|||.|+.++..|.+ ...++.
T Consensus         6 ~l~~g~~~p~f~l~~~-------------------~g~~~~l~~~-~gk~vll~f~-a~~C~~C~~~~~~l~~~l~~~~~   64 (159)
T 2ls5_A            6 IVRIGEMAPDFTITLT-------------------DGKQVTLSSL-RGKVVMLQFT-ASWCGVCRKEMPFIEKDIWLKHK   64 (159)
Confidence            4578888996666554                   4899999996 6677777777 8899999999999998 888887


Q ss_pred             -hcCCeEEEEecCChhhHHhhhcC-CCCCceeEeccchHHHHHhCCCcccccccccccccCHHHHHHHHHHHhcCCcccc
Q 015842          261 -ALGIQLFAVLHEYIESEVKDFWP-RYWGGVVVYDQGMEFFKALGGGKLLKDKFLSGFLLNPRAIANYKRARTLGVEQNF  338 (399)
Q Consensus       261 -alGV~LVaIspE~~e~~ik~F~~-~~l~f~VLsDp~r~lYkaLGl~r~~r~s~lsgfl~~P~v~~~~~rA~~~G~~gn~  338 (399)
                       ..++.+|+|+.+.....++.|.+ ..++|++++|++..++++||+..                                
T Consensus        65 ~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~--------------------------------  112 (159)
T 2ls5_A           65 DNADFALIGIDRDEPLEKVLAFAKSTGVTYPLGLDPGADIFAKYALRD--------------------------------  112 (159)
Confidence             78999999997765434667764 67899999999999988877630                                


Q ss_pred             CCCCcccceEEEEecCCCcEEEEEecCCCCCCCCHHHHHHHHHhhhhh
Q 015842          339 KGEGEIKGGLFIVGRGRSGIAYQFIERNFGDWAPLAEVIEICTQLQDQ  386 (399)
Q Consensus       339 ~GD~~qLGGtFVId~gGg~I~yah~d~d~gDrad~eeVLaAl~~l~~~  386 (399)
                          .-.|.+||||++| +|++.+...   +..+++++|+.+......
T Consensus       113 ----~~~P~~~lid~~G-~i~~~~~g~---~~~~l~~~l~~l~~~~~~  152 (159)
T 2ls5_A          113 ----AGITRNVLIDREG-KIVKLTRLY---NEEEFASLVQQINEMLKE  152 (159)
Confidence                0146799999996 899888653   233566666666655433

>2v1m_A Glutathione peroxidase; selenium, selenocysteine, oxidoreductase, lipid peroxidase, schistosoma detoxification pathway; 1.00A {Schistosoma mansoni} PDB: 2wgr_A

Probab=99.53  E-value=5.5e-14  Score=120.62  Aligned_cols=147  Identities=13%  Similarity=0.073  Sum_probs=100.7

Q ss_pred             CCCCCCCCCcccccCccccccchhhhcccccccccCCCceechhhccCCCEEEEeecCCCCcchHHHHHHHHhccchhhh
Q 015842          182 PPVNEKVAPYSAIENISIQKLTPEYKIGMERLVKTKTPPMKALELWRESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDA  261 (399)
Q Consensus       182 a~~~~~~apl~~L~~i~l~~l~~~~~~g~~~~v~~~G~~VsLsdL~~~~pvVLvFyRg~gCP~Cr~el~~L~e~~pef~a  261 (399)
                      ++++|+.+|.|.|++.                   +|++++++++ +++++||.|+- .|||.|+.++..|.+++.++.+
T Consensus         4 ~~~~g~~~p~f~l~~~-------------------~G~~~~l~~~-~gk~vlv~f~a-~~C~~C~~~~~~l~~l~~~~~~   62 (169)
T 2v1m_A            4 SHKSWNSIYEFTVKDI-------------------NGVDVSLEKY-RGHVCLIVNVA-CKCGATDKNYRQLQEMHTRLVG   62 (169)
T ss_dssp             ---CCCSGGGCEEEBT-------------------TSCEEEGGGG-TTSEEEEEEEC-SSSTTHHHHHHHHHHHHHHHGG
T ss_pred             cccCCcccccceeecC-------------------CCCCccHHHc-CCCEEEEEEee-ccCCchHHHHHHHHHHHHHhhc
Confidence            4678888997766665                   4999999996 66677776664 8999999999999999999999


Q ss_pred             cCCeEEEEecC--------ChhhHHhhh-cC-CCCCceeEe--ccchH----HHHHhCCCcccccccccccccCHHHHHH
Q 015842          262 LGIQLFAVLHE--------YIESEVKDF-WP-RYWGGVVVY--DQGME----FFKALGGGKLLKDKFLSGFLLNPRAIAN  325 (399)
Q Consensus       262 lGV~LVaIspE--------~~e~~ik~F-~~-~~l~f~VLs--Dp~r~----lYkaLGl~r~~r~s~lsgfl~~P~v~~~  325 (399)
                      .|+++|+|+.+        +++ .++.| .+ ..++|+++.  |++..    +|+.+                       
T Consensus        63 ~~~~vv~v~~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~l-----------------------  118 (169)
T 2v1m_A           63 KGLRILAFPCNQFGGQEPWAEA-EIKKFVTEKYGVQFDMFSKIKVNGSDADDLYKFL-----------------------  118 (169)
T ss_dssp             GTEEEEEEECCCSTTCCCSCHH-HHHHHHHHHHCCCSEEBCCCCCSSTTSCHHHHHH-----------------------
T ss_pred             CCeEEEEEECCccCCCCCCCHH-HHHHHHHHhcCCCCceEEEEeecCccccHHHHHH-----------------------
Confidence            99999999863        333 37777 33 678899996  66543    22211                       


Q ss_pred             HHHHHhcCCccccCCCCcccceEEEEecCCCcEEEEEecCCCCCCCCHHHHHHHHHhhh
Q 015842          326 YKRARTLGVEQNFKGEGEIKGGLFIVGRGRSGIAYQFIERNFGDWAPLAEVIEICTQLQ  384 (399)
Q Consensus       326 ~~rA~~~G~~gn~~GD~~qLGGtFVId~gGg~I~yah~d~d~gDrad~eeVLaAl~~l~  384 (399)
                        .....|+.+.   ...-.|.+||||++| +|++.|...     .+++++.+.++++-
T Consensus       119 --~~~~~~~~~~---~i~~~P~~~lid~~G-~i~~~~~g~-----~~~~~l~~~i~~ll  166 (169)
T 2v1m_A          119 --KSRQHGTLTN---NIKWNFSKFLVDRQG-QPVKRYSPT-----TAPYDIEGDIMELL  166 (169)
T ss_dssp             --HHHSCCSSSC---SCCSTTCEEEECTTS-CEEEEECTT-----SCGGGGHHHHHHHH
T ss_pred             --HhhcCCccCC---cccccceEEEECCCC-CEEEEcCCC-----CCHHHHHHHHHHHh
Confidence              1111122110   112258999999997 899988763     23466666666553

>2b5x_A YKUV protein, TRXY; thioredoxin-like, oxidoreductase; NMR {Bacillus subtilis} SCOP: c.47.1.10 PDB: 2b5y_A

Probab=99.53  E-value=1.2e-13  Score=114.80  Aligned_cols=136  Identities=10%  Similarity=0.092  Sum_probs=106.3

Q ss_pred             CCCCCCCcccccCccccccchhhhcccccccccCCCceechhhccCCCEEEEeecCCCCcchHHHHHHHHhccchhhhcC
Q 015842          184 VNEKVAPYSAIENISIQKLTPEYKIGMERLVKTKTPPMKALELWRESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALG  263 (399)
Q Consensus       184 ~~~~~apl~~L~~i~l~~l~~~~~~g~~~~v~~~G~~VsLsdL~~~~pvVLvFyRg~gCP~Cr~el~~L~e~~pef~alG  263 (399)
                      ++|+.+|.+.++..   ++              +|++++++++ +++++||.|+ ..|||.|+.++..|.++..++... 
T Consensus         2 ~~g~~~P~f~~~~~---~~--------------~g~~~~~~~~-~gk~~lv~f~-~~~C~~C~~~~~~l~~l~~~~~~~-   61 (148)
T 2b5x_A            2 KLRQPMPELTGEKA---WL--------------NGEVTREQLI-GEKPTLIHFW-SISCHLCKEAMPQVNEFRDKYQDQ-   61 (148)
T ss_dssp             CTTCBCCCCCCCSE---EE--------------SCCCCHHHHT-TTSCEEEEEE-CTTCHHHHHHHHHHHHHHHHHTTT-
T ss_pred             CCCCCCCCCccccc---cc--------------cCcccchhhc-CCCEEEEEEE-cCCCHHHHHHhHHHHHHHHHhcCC-
Confidence            57888886665322   11              4899999986 6778888777 699999999999999988888776 


Q ss_pred             CeEEEEecC------ChhhHHhhhcC-CCCCceeEeccchHHHHHhCCCcccccccccccccCHHHHHHHHHHHhcCCcc
Q 015842          264 IQLFAVLHE------YIESEVKDFWP-RYWGGVVVYDQGMEFFKALGGGKLLKDKFLSGFLLNPRAIANYKRARTLGVEQ  336 (399)
Q Consensus       264 V~LVaIspE------~~e~~ik~F~~-~~l~f~VLsDp~r~lYkaLGl~r~~r~s~lsgfl~~P~v~~~~~rA~~~G~~g  336 (399)
                      +++++|..+      +.+ .++.|.. +.++|+++.|++..+.+.||+.                               
T Consensus        62 ~~~~~v~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~-------------------------------  109 (148)
T 2b5x_A           62 LNVVAVHMPRSEDDLDPG-KIKETAAEHDITQPIFVDSDHALTDAFENE-------------------------------  109 (148)
T ss_dssp             SEEEEEECCCSTTTSSHH-HHHHHHHHTTCCSCEEECSSCHHHHHTCCC-------------------------------
T ss_pred             cEEEEEEcCCCccccCHH-HHHHHHHHcCCCcceEECCchhHHHHhCCC-------------------------------
Confidence            999999854      344 3677774 7789999999999999988873                               


Q ss_pred             ccCCCCcccceEEEEecCCCcEEEEEecCCCCCCCCHHHHHHHHHhhh
Q 015842          337 NFKGEGEIKGGLFIVGRGRSGIAYQFIERNFGDWAPLAEVIEICTQLQ  384 (399)
Q Consensus       337 n~~GD~~qLGGtFVId~gGg~I~yah~d~d~gDrad~eeVLaAl~~l~  384 (399)
                             ..|.+||+|++| +|++.+.+.     .+.+++.+.++.+-
T Consensus       110 -------~~P~~~lid~~G-~i~~~~~g~-----~~~~~l~~~l~~~l  144 (148)
T 2b5x_A          110 -------YVPAYYVFDKTG-QLRHFQAGG-----SGMKMLEKRVNRVL  144 (148)
T ss_dssp             -------CSSEEEEECTTC-BEEEEEESC-----STTHHHHHHHHHHH
T ss_pred             -------CCCEEEEECCCC-cEEEEecCC-----CCHHHHHHHHHHHH
Confidence                   147899999996 899988764     35677777777664

>1lu4_A Soluble secreted antigen MPT53; thioredoxin-like fold, structural genomics, PSI, protein structure initiative; 1.12A {Mycobacterium tuberculosis} SCOP: c.47.1.10

Probab=99.53  E-value=1.3e-13  Score=113.43  Aligned_cols=121  Identities=14%  Similarity=0.107  Sum_probs=98.5

Q ss_pred             CCCceechhhccCCCEEEEeecCCCCcchHHHHHHHHhccchhhhcCCeEEEEecCChhhHHhhhcC-CCCCceeEeccc
Q 015842          217 KTPPMKALELWRESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLHEYIESEVKDFWP-RYWGGVVVYDQG  295 (399)
Q Consensus       217 ~G~~VsLsdL~~~~pvVLvFyRg~gCP~Cr~el~~L~e~~pef~alGV~LVaIspE~~e~~ik~F~~-~~l~f~VLsDp~  295 (399)
                      +|+.+++.++ +++++||.|+ ..|||.|+.++..|.+...++.  ++.+++|..+.....++.|.. ..++|+++.|++
T Consensus        13 ~g~~~~l~~~-~~k~~lv~f~-~~~C~~C~~~~~~l~~~~~~~~--~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~   88 (136)
T 1lu4_A           13 SGAPFDGASL-QGKPAVLWFW-TPWCPFCNAEAPSLSQVAAANP--AVTFVGIATRADVGAMQSFVSKYNLNFTNLNDAD   88 (136)
T ss_dssp             TSCEEEGGGG-TTSCEEEEEE-CTTCHHHHHHHHHHHHHHHHCT--TSEEEEEECSSCHHHHHHHHHHHTCCSEEEECTT
T ss_pred             CCCeecHHHh-CCCEEEEEEE-CCcChhHHHHHHHHHHHHHHCC--CcEEEEEEcCCCHHHHHHHHHHcCCCceEEECCc
Confidence            4999999997 6778888888 8999999999999999888886  899999998764444777775 678999999999


Q ss_pred             hHHHHHhCCCcccccccccccccCHHHHHHHHHHHhcCCccccCCCCcccceEEEEecCCCcEEEEEecCCCCCCCCHHH
Q 015842          296 MEFFKALGGGKLLKDKFLSGFLLNPRAIANYKRARTLGVEQNFKGEGEIKGGLFIVGRGRSGIAYQFIERNFGDWAPLAE  375 (399)
Q Consensus       296 r~lYkaLGl~r~~r~s~lsgfl~~P~v~~~~~rA~~~G~~gn~~GD~~qLGGtFVId~gGg~I~yah~d~d~gDrad~ee  375 (399)
                      ..+.+.||+.                                      ..|.+||+|++| +|+ .|.+  .....+.++
T Consensus        89 ~~~~~~~~i~--------------------------------------~~P~~~lid~~G-~i~-~~~~--~~g~~~~~~  126 (136)
T 1lu4_A           89 GVIWARYNVP--------------------------------------WQPAFVFYRADG-TST-FVNN--PTAAMSQDE  126 (136)
T ss_dssp             SHHHHHTTCC--------------------------------------SSSEEEEECTTS-CEE-EECC--SSSCCCHHH
T ss_pred             hhHHHhcCCC--------------------------------------CCCEEEEECCCC-cEE-EEEc--CCCccCHHH
Confidence            9999988873                                      147899999996 787 6652  234567888


Q ss_pred             HHHHHHhh
Q 015842          376 VIEICTQL  383 (399)
Q Consensus       376 VLaAl~~l  383 (399)
                      +.+.++.+
T Consensus       127 l~~~l~~l  134 (136)
T 1lu4_A          127 LSGRVAAL  134 (136)
T ss_dssp             HHHHHHHC
T ss_pred             HHHHHHHH
Confidence            88888765

>1zzo_A RV1677; thioredoxin fold, structural genomics, PSI, protein structure initiative, TB structural genomics consortium, TBSGC; 1.60A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 3ios_A

Probab=99.52  E-value=2e-13  Score=111.70  Aligned_cols=119  Identities=16%  Similarity=0.117  Sum_probs=96.2

Q ss_pred             CCCceechhhccCCCEEEEeecCCCCcchHHHHHHHHhccchhhhcCCeEEEEecCChhhHHhhhcC-CCC-CceeEecc
Q 015842          217 KTPPMKALELWRESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLHEYIESEVKDFWP-RYW-GGVVVYDQ  294 (399)
Q Consensus       217 ~G~~VsLsdL~~~~pvVLvFyRg~gCP~Cr~el~~L~e~~pef~alGV~LVaIspE~~e~~ik~F~~-~~l-~f~VLsDp  294 (399)
                      +|+.+++.++ +++++||.|+ ..|||.|+.++..|.++..++.  ++++++|..+.....++.|.+ ..+ +|+++.|+
T Consensus        14 ~g~~~~l~~~-~~k~~ll~f~-~~~C~~C~~~~~~l~~~~~~~~--~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~d~   89 (136)
T 1zzo_A           14 DGHDFHGESL-LGKPAVLWFW-APWCPTCQGEAPVVGQVAASHP--EVTFVGVAGLDQVPAMQEFVNKYPVKTFTQLADT   89 (136)
T ss_dssp             TSCEEEGGGG-TTSCEEEEEE-CTTCHHHHHHHHHHHHHHHHCT--TSEEEEEECSSCHHHHHHHHHHTTCTTSEEEECT
T ss_pred             CCCEeeHHHh-CCCeEEEEEE-cCCChhHHHHHHHHHHHHHHcC--CeEEEEEeCCCCHHHHHHHHHHcCCCceEEEEcC
Confidence            4899999997 6778888888 8899999999999999888876  899999997664444777774 677 99999999


Q ss_pred             chHHHHHhCCCcccccccccccccCHHHHHHHHHHHhcCCccccCCCCcccceEEEEecCCCcEEEEEecCCCCCCCCHH
Q 015842          295 GMEFFKALGGGKLLKDKFLSGFLLNPRAIANYKRARTLGVEQNFKGEGEIKGGLFIVGRGRSGIAYQFIERNFGDWAPLA  374 (399)
Q Consensus       295 ~r~lYkaLGl~r~~r~s~lsgfl~~P~v~~~~~rA~~~G~~gn~~GD~~qLGGtFVId~gGg~I~yah~d~d~gDrad~e  374 (399)
                      +..+.+.||+.                                      ..|.+||+|++| +|+ .+.+.     .+.+
T Consensus        90 ~~~~~~~~~i~--------------------------------------~~P~~~~id~~g-~i~-~~~g~-----~~~~  124 (136)
T 1zzo_A           90 DGSVWANFGVT--------------------------------------QQPAYAFVDPHG-NVD-VVRGR-----MSQD  124 (136)
T ss_dssp             TCHHHHHTTCC--------------------------------------SSSEEEEECTTC-CEE-EEESC-----CCHH
T ss_pred             CcHHHHHcCCC--------------------------------------CCceEEEECCCC-CEE-EEecC-----CCHH
Confidence            99999988773                                      147899999996 787 66543     4578


Q ss_pred             HHHHHHHhhh
Q 015842          375 EVIEICTQLQ  384 (399)
Q Consensus       375 eVLaAl~~l~  384 (399)
                      ++.+.++.+.
T Consensus       125 ~l~~~l~~~l  134 (136)
T 1zzo_A          125 ELTRRVTALT  134 (136)
T ss_dssp             HHHHHHHHHC
T ss_pred             HHHHHHHHHh
Confidence            8888887653

>2lja_A Putative thiol-disulfide oxidoreductase; structural genomics, unknown function, thioredoxin-like; NMR {Bacteroides vulgatus}

Probab=99.51  E-value=4e-14  Score=119.48  Aligned_cols=140  Identities=10%  Similarity=0.041  Sum_probs=106.8

Q ss_pred             CCCCCCCC-cccccCccccccchhhhcccccccccCCCceechhhccCCCEEEEeecCCCCcchHHHHHHHHhccchhhh
Q 015842          183 PVNEKVAP-YSAIENISIQKLTPEYKIGMERLVKTKTPPMKALELWRESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDA  261 (399)
Q Consensus       183 ~~~~~~ap-l~~L~~i~l~~l~~~~~~g~~~~v~~~G~~VsLsdL~~~~pvVLvFyRg~gCP~Cr~el~~L~e~~pef~a  261 (399)
                      +.+|+.+| .+.+.+.                   +|++++++++ +++++||.|+ ..|||.|+.++..|.++..++..
T Consensus         3 l~~G~~~p~~f~l~~~-------------------~g~~~~l~~~-~gk~~lv~f~-~~~C~~C~~~~~~l~~l~~~~~~   61 (152)
T 2lja_A            3 LRSGNPSAASFSYPDI-------------------NGKTVSLADL-KGKYIYIDVW-ATWCGPCRGELPALKELEEKYAG   61 (152)
T ss_dssp             TTTTCCCSSSCEEEET-------------------TTEEEESTTT-TTSEEEEEEC-CSSCCGGGGTHHHHHHHHHHSTT
T ss_pred             cccCCCCCcccEeecC-------------------CCCEeeHHHc-CCCEEEEEEE-CCcCHhHHHHhHHHHHHHHHhcc
Confidence            46788888 7777665                   4899999996 6667777766 89999999999999998888888


Q ss_pred             cCCeEEEEecCChhhHHhhhcC-CCCC-ceeEeccchHHHHHhCCCcccccccccccccCHHHHHHHHHHHhcCCccccC
Q 015842          262 LGIQLFAVLHEYIESEVKDFWP-RYWG-GVVVYDQGMEFFKALGGGKLLKDKFLSGFLLNPRAIANYKRARTLGVEQNFK  339 (399)
Q Consensus       262 lGV~LVaIspE~~e~~ik~F~~-~~l~-f~VLsDp~r~lYkaLGl~r~~r~s~lsgfl~~P~v~~~~~rA~~~G~~gn~~  339 (399)
                      .|+.+|+|+.+.....++.|.. ..++ ++++.|++..+.+.||+.                                  
T Consensus        62 ~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~----------------------------------  107 (152)
T 2lja_A           62 KDIHFVSLSCDKNKKAWENMVTKDQLKGIQLHMGTDRTFMDAYLIN----------------------------------  107 (152)
T ss_dssp             SSEEEEEEECCSCHHHHHHHHHHHTCCSEEEECSSCTHHHHHTTCC----------------------------------
T ss_pred             CCeEEEEEEccCcHHHHHHHHHhcCCCCceeecCcchhHHHHcCcC----------------------------------
Confidence            8999999997765444666664 4455 468899999999988773                                  


Q ss_pred             CCCcccceEEEEecCCCcEEEEEecCCCCCCCCHHHHHHHHHhhhhhh
Q 015842          340 GEGEIKGGLFIVGRGRSGIAYQFIERNFGDWAPLAEVIEICTQLQDQQ  387 (399)
Q Consensus       340 GD~~qLGGtFVId~gGg~I~yah~d~d~gDrad~eeVLaAl~~l~~~~  387 (399)
                          ..|.+||||++| +|++.+..     ..+.+++.+.++.+....
T Consensus       108 ----~~P~~~lid~~G-~i~~~~~g-----~~~~~~l~~~l~~~~~~~  145 (152)
T 2lja_A          108 ----GIPRFILLDRDG-KIISANMT-----RPSDPKTAEKFNELLGLE  145 (152)
T ss_dssp             ----SSCCEEEECTTS-CEEESSCC-----CTTCHHHHHHHHHHHTCC
T ss_pred             ----CCCEEEEECCCC-eEEEccCC-----CCCHHHHHHHHHHHhccc
Confidence                146899999996 78886533     345577777777765443

>2b1k_A Thiol:disulfide interchange protein DSBE; C-terminal thioredoxin-like domain, N-terminal beta-sheet, fingerprint rigion, oxidoreductase; 1.90A {Escherichia coli} PDB: 3k8n_A 2g0f_A 1z5y_E 2b1l_A

Probab=99.51  E-value=2.2e-13  Score=117.54  Aligned_cols=137  Identities=17%  Similarity=0.079  Sum_probs=104.2

Q ss_pred             CCCCCCCCCcccccCccccccchhhhcccccccccCCCceechhhccCCCEEEEeecCCCCcchHHHHHHHHhccchhhh
Q 015842          182 PPVNEKVAPYSAIENISIQKLTPEYKIGMERLVKTKTPPMKALELWRESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDA  261 (399)
Q Consensus       182 a~~~~~~apl~~L~~i~l~~l~~~~~~g~~~~v~~~G~~VsLsdL~~~~pvVLvFyRg~gCP~Cr~el~~L~e~~pef~a  261 (399)
                      ...+|+.+|.|.|++..                 .+|+++++.++.+++++||.|+ ..|||.|+.++..|.++..+   
T Consensus        21 ~~~~G~~~P~f~l~~~~-----------------~~g~~~~~~~~~~gk~vll~F~-a~~C~~C~~~~~~l~~l~~~---   79 (168)
T 2b1k_A           21 SALIGKPVPKFRLESLD-----------------NPGQFYQADVLTQGKPVLLNVW-ATWCPTCRAEHQYLNQLSAQ---   79 (168)
T ss_dssp             CTTTTSBCCCCEEEESS-----------------STTCEEEGGGGCCSSCEEEEEE-CTTCHHHHHHHHHHHHHHHT---
T ss_pred             ccccCCcCCCeEeeccc-----------------CCCcEeehhHhcCCCEEEEEEE-CCCCHHHHHHHHHHHHHHHC---
Confidence            45789999966665541                 1488999998878888888888 78999999999998876543   


Q ss_pred             cCCeEEEEecCChhhHHhhhcC-CCCCce-eEeccchHHHHHhCCCcccccccccccccCHHHHHHHHHHHhcCCccccC
Q 015842          262 LGIQLFAVLHEYIESEVKDFWP-RYWGGV-VVYDQGMEFFKALGGGKLLKDKFLSGFLLNPRAIANYKRARTLGVEQNFK  339 (399)
Q Consensus       262 lGV~LVaIspE~~e~~ik~F~~-~~l~f~-VLsDp~r~lYkaLGl~r~~r~s~lsgfl~~P~v~~~~~rA~~~G~~gn~~  339 (399)
                       |+.+|+|+.+.....++.|.+ ..++|+ ++.|++..+.+.||+.                                  
T Consensus        80 -~v~vv~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~----------------------------------  124 (168)
T 2b1k_A           80 -GIRVVGMNYKDDRQKAISWLKELGNPYALSLFDGDGMLGLDLGVY----------------------------------  124 (168)
T ss_dssp             -TCCEEEEEESCCHHHHHHHHHHHCCCCSEEEEETTCHHHHHHTCC----------------------------------
T ss_pred             -CCEEEEEECCCChHHHHHHHHHcCCCCceeeECcchHHHHHcCcc----------------------------------
Confidence             899999996444344677764 567888 7899999999988773                                  


Q ss_pred             CCCcccceEEEEecCCCcEEEEEecCCCCCCCCHHHHHHHHHhhh
Q 015842          340 GEGEIKGGLFIVGRGRSGIAYQFIERNFGDWAPLAEVIEICTQLQ  384 (399)
Q Consensus       340 GD~~qLGGtFVId~gGg~I~yah~d~d~gDrad~eeVLaAl~~l~  384 (399)
                          ..|.+||||++| +|++.|.+.     .+.+++.+.++.+.
T Consensus       125 ----~~P~~~lid~~G-~i~~~~~g~-----~~~~~l~~~l~~~l  159 (168)
T 2b1k_A          125 ----GAPETFLIDGNG-IIRYRHAGD-----LNPRVWEEEIKPLW  159 (168)
T ss_dssp             ----SSSEEEEECTTS-BEEEEEESC-----CCHHHHHHTTHHHH
T ss_pred             ----ccCEEEEECCCC-eEEEEEeCC-----CCHHHHHHHHHHHH
Confidence                147899999996 899988753     35666666665553

>4evm_A Thioredoxin family protein; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.51A {Streptococcus pneumoniae}

Probab=99.50  E-value=2.7e-13  Score=110.33  Aligned_cols=119  Identities=8%  Similarity=0.066  Sum_probs=93.5

Q ss_pred             CCCceechhhccCCCEEEEeecCCCCcchHHHHHHHHhccchhhhcCCeEEEE------ecCChhhHHhhhcC-CCC-Cc
Q 015842          217 KTPPMKALELWRESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAV------LHEYIESEVKDFWP-RYW-GG  288 (399)
Q Consensus       217 ~G~~VsLsdL~~~~pvVLvFyRg~gCP~Cr~el~~L~e~~pef~alGV~LVaI------spE~~e~~ik~F~~-~~l-~f  288 (399)
                      +|++++++++ +++++||.|+ ..|||.|+.++..|.+...+ ...++.+|+|      ..++.+ .++.|.+ ..+ +|
T Consensus        11 ~g~~~~l~~~-~gk~~lv~f~-~~~C~~C~~~~~~l~~~~~~-~~~~~~~v~i~~~~~~~~~~~~-~~~~~~~~~~~~~~   86 (138)
T 4evm_A           11 DGKTYRLSDY-KGKKVYLKFW-ASWCSICLASLPDTDEIAKE-AGDDYVVLTVVSPGHKGEQSEA-DFKNWYKGLDYKNL   86 (138)
T ss_dssp             TSCEEEGGGG-TTSEEEEEEC-CTTCHHHHHHHHHHHHHHHT-CTTTEEEEEEECTTSTTCCCHH-HHHHHHTTCCCTTC
T ss_pred             CCCEEEHHHh-CCCEEEEEEE-cCcCHHHHHHHHHHHHHHHH-hCCCcEEEEEEcCCCCchhhHH-HHHHHHhhcCCCCe
Confidence            4999999996 6667777666 88999999999999988777 4457889998      334444 3667765 556 89


Q ss_pred             eeEeccchHHHHHhCCCcccccccccccccCHHHHHHHHHHHhcCCccccCCCCcccceEEEEecCCCcEEEEEecCCCC
Q 015842          289 VVVYDQGMEFFKALGGGKLLKDKFLSGFLLNPRAIANYKRARTLGVEQNFKGEGEIKGGLFIVGRGRSGIAYQFIERNFG  368 (399)
Q Consensus       289 ~VLsDp~r~lYkaLGl~r~~r~s~lsgfl~~P~v~~~~~rA~~~G~~gn~~GD~~qLGGtFVId~gGg~I~yah~d~d~g  368 (399)
                      +++.|++..+.+.||+.                                      ..|.+||+|++| +|++.+.+.   
T Consensus        87 ~~~~d~~~~~~~~~~v~--------------------------------------~~P~~~lid~~G-~i~~~~~g~---  124 (138)
T 4evm_A           87 PVLVDPSGKLLETYGVR--------------------------------------SYPTQAFIDKEG-KLVKTHPGF---  124 (138)
T ss_dssp             CEEECTTCHHHHHTTCC--------------------------------------SSSEEEEECTTC-CEEEEEESC---
T ss_pred             eEEECcchHHHHHcCcc--------------------------------------cCCeEEEECCCC-cEEEeecCC---
Confidence            99999999999988873                                      137899999996 899988753   


Q ss_pred             CCCCHHHHHHHHHhh
Q 015842          369 DWAPLAEVIEICTQL  383 (399)
Q Consensus       369 Drad~eeVLaAl~~l  383 (399)
                        .+.+++.+.++++
T Consensus       125 --~~~~~l~~~l~~l  137 (138)
T 4evm_A          125 --MEKDAILQTLKEL  137 (138)
T ss_dssp             --CCHHHHHHHHHHC
T ss_pred             --CcHHHHHHHHHhh
Confidence              4578888887765

>2gs3_A PHGPX, GPX-4, phospholipid hydroperoxide glutathione peroxidase; GSHPX-4,phospholipid hydroperoxide; 1.90A {Homo sapiens}

Probab=99.49  E-value=1.3e-13  Score=122.47  Aligned_cols=148  Identities=9%  Similarity=-0.023  Sum_probs=101.1

Q ss_pred             CCCCCCCCCCcccccCccccccchhhhcccccccccCCCceechhhccCCCEEEEeecCCCCcchHHHHHHHHhccchhh
Q 015842          181 APPVNEKVAPYSAIENISIQKLTPEYKIGMERLVKTKTPPMKALELWRESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFD  260 (399)
Q Consensus       181 ~a~~~~~~apl~~L~~i~l~~l~~~~~~g~~~~v~~~G~~VsLsdL~~~~pvVLvFyRg~gCP~Cr~el~~L~e~~pef~  260 (399)
                      .++.+|+.+|.|.|++.                   +|++++++++ +++ +||++|...|||.|+.++..|++++.++.
T Consensus        21 ~~~~~g~~~p~f~l~~~-------------------~G~~v~l~~~-~Gk-~vlv~F~atwC~~C~~~~~~l~~l~~~~~   79 (185)
T 2gs3_A           21 QSMRCARSMHEFSAKDI-------------------DGHMVNLDKY-RGF-VCIVTNVASQGGKTEVNYTQLVDLHARYA   79 (185)
T ss_dssp             GGGGGCCCGGGCEEEBT-------------------TSCEEEGGGG-TTS-EEEEEEECSSSTTHHHHHHHHHHHHHHHG
T ss_pred             hhccCCCCcCCceeEcC-------------------CCCEeeHHHc-CCC-EEEEEEecCCCCchHHHHHHHHHHHHHhh
Confidence            45667888887666655                   4999999996 554 45556668999999999999999999999


Q ss_pred             hcCCeEEEEecC--------ChhhHHhhhcC-CCCCceeEe--ccch----HHHHHhCCCcccccccccccccCHHHHHH
Q 015842          261 ALGIQLFAVLHE--------YIESEVKDFWP-RYWGGVVVY--DQGM----EFFKALGGGKLLKDKFLSGFLLNPRAIAN  325 (399)
Q Consensus       261 alGV~LVaIspE--------~~e~~ik~F~~-~~l~f~VLs--Dp~r----~lYkaLGl~r~~r~s~lsgfl~~P~v~~~  325 (399)
                      +.|+++|+|+.+        +++ .+++|.+ ..++|+++.  |.+.    .+|+.++-..             +     
T Consensus        80 ~~~v~vv~is~d~~~~~~~~~~~-~~~~~~~~~~~~~p~~~~~d~~~~~~~~~~~~l~~~~-------------~-----  140 (185)
T 2gs3_A           80 ECGLRILAFPCNQFGKQEPGSNE-EIKEFAAGYNVKFDMFSKICVNGDDAHPLWKWMKIQP-------------K-----  140 (185)
T ss_dssp             GGTEEEEEEECCTTTTCCCSCHH-HHHHHHHHTTCCSEEBCCCBSSSTTBCHHHHHHTTSG-------------G-----
T ss_pred             cCCeEEEEEECcccCCCCCCCHH-HHHHHHHHcCCCCeeeeeeccCChhhhHHHHHHHhhc-------------c-----
Confidence            999999999853        233 3677764 678899997  4443    2555443210             0     


Q ss_pred             HHHHHhcCCccccCCCCcccceEEEEecCCCcEEEEEecCCCCCCCCHHHHHHHHHh
Q 015842          326 YKRARTLGVEQNFKGEGEIKGGLFIVGRGRSGIAYQFIERNFGDWAPLAEVIEICTQ  382 (399)
Q Consensus       326 ~~rA~~~G~~gn~~GD~~qLGGtFVId~gGg~I~yah~d~d~gDrad~eeVLaAl~~  382 (399)
                           ..|+.+   ....-.|.+||||++| +|++.|...     .+++++.+.+++
T Consensus       141 -----~~g~~~---~~i~~~P~~~lid~~G-~i~~~~~g~-----~~~~~l~~~i~~  183 (185)
T 2gs3_A          141 -----GKGILG---NAIKWNFTKFLIDKNG-CVVKRYGPM-----EEPLVIEKDLPH  183 (185)
T ss_dssp             -----GCCSSS---SSCCSSCCEEEECTTS-CEEEEECTT-----SCGGGGGGGHHH
T ss_pred             -----cccccC---CcccccceEEEECCCC-CEEEeeCCC-----CCHHHHHHHHHH
Confidence                 001111   0112258999999996 899998763     334555555443

>3ha9_A Uncharacterized thioredoxin-like protein; PSI, MCSG, structural G midwest center for structural genomics, protein structure initiative; 1.70A {Aeropyrum pernix}

Probab=99.48  E-value=7.6e-14  Score=120.12  Aligned_cols=133  Identities=13%  Similarity=0.105  Sum_probs=102.0

Q ss_pred             CCCCCCCCcccccCccccccchhhhcccccccccCCCceechhhccCCCEEEEeecCCCCcchHHHHHHHHhccchhhhc
Q 015842          183 PVNEKVAPYSAIENISIQKLTPEYKIGMERLVKTKTPPMKALELWRESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDAL  262 (399)
Q Consensus       183 ~~~~~~apl~~L~~i~l~~l~~~~~~g~~~~v~~~G~~VsLsdL~~~~pvVLvFyRg~gCP~Cr~el~~L~e~~pef~al  262 (399)
                      +.+|+.+|.+.+.+.                   +|+.++++++ +++++||.|+ ..|||+|+.++..|.++..++.  
T Consensus        11 ~~~g~~~p~~~l~~~-------------------~g~~~~l~~~-~gk~~lv~F~-~~~C~~C~~~~~~l~~l~~~~~--   67 (165)
T 3ha9_A           11 EEVLEREASFSLTTI-------------------DGEVISLNNV-GGDVVILWFM-AAWCPSCVYMADLLDRLTEKYR--   67 (165)
T ss_dssp             HHHHHHHHCCCEEBT-------------------TSCEECGGGC-CSSEEEEEEE-CTTCTTHHHHHHHHHHHHHHCT--
T ss_pred             ccccCcCCCCEeecC-------------------CCCEeeHHHh-CCCEEEEEEE-CCCCcchhhhHHHHHHHHHHcC--
Confidence            356677775555544                   4999999996 6677777777 9999999999999999888887  


Q ss_pred             CCeEEEEecC------------------ChhhHHhhhcC-CCC-CceeEeccchHHHHHhCCCcccccccccccccCHHH
Q 015842          263 GIQLFAVLHE------------------YIESEVKDFWP-RYW-GGVVVYDQGMEFFKALGGGKLLKDKFLSGFLLNPRA  322 (399)
Q Consensus       263 GV~LVaIspE------------------~~e~~ik~F~~-~~l-~f~VLsDp~r~lYkaLGl~r~~r~s~lsgfl~~P~v  322 (399)
                      ++++|+|+.+                  .....++.|.+ ..+ +|+++.| +..+.+.||+.                 
T Consensus        68 ~v~vv~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d-~~~~~~~~~v~-----------------  129 (165)
T 3ha9_A           68 EISVIAIDFWTAEALKALGLNKPGYPPPDTPEMFRKFIANYGDPSWIMVMD-DGSLVEKFNVR-----------------  129 (165)
T ss_dssp             TEEEEEEECCSHHHHHHHTCCSTTSCCCCCHHHHHHHHHHHSCTTSEEEEC-CSHHHHHTTCC-----------------
T ss_pred             CcEEEEEEecccccccccccccccCCCCCCHHHHHHHHHHcCCCCeeEEeC-hHHHHHHhCCC-----------------
Confidence            9999999876                  23334777775 667 9999999 88999988773                 


Q ss_pred             HHHHHHHHhcCCccccCCCCcccceEEEEecCCCcEEEEEecCCCCCCCCHHHHHHHHHhhh
Q 015842          323 IANYKRARTLGVEQNFKGEGEIKGGLFIVGRGRSGIAYQFIERNFGDWAPLAEVIEICTQLQ  384 (399)
Q Consensus       323 ~~~~~rA~~~G~~gn~~GD~~qLGGtFVId~gGg~I~yah~d~d~gDrad~eeVLaAl~~l~  384 (399)
                                           ..|.+||||++| +|++      .+..++.+++.+.++.+.
T Consensus       130 ---------------------~~P~~~lid~~G-~i~~------~g~~~~~~~l~~~l~~l~  163 (165)
T 3ha9_A          130 ---------------------SIDYIVIMDKSS-NVLY------AGTTPSLGELESVIKSVQ  163 (165)
T ss_dssp             ---------------------SSSEEEEEETTC-CEEE------EEESCCHHHHHHHHHHC-
T ss_pred             ---------------------CceEEEEEcCCC-cEEE------eCCCCCHHHHHHHHHHHh
Confidence                                 137899999997 7888      233336788888877654

>2hyx_A Protein DIPZ; thioredoxin fold, jelly-roll, structural genomics, TB struct genomics consortium, TBSGC, unknown function; 1.90A {Mycobacterium tuberculosis}

Probab=99.48  E-value=3.7e-13  Score=134.10  Aligned_cols=151  Identities=11%  Similarity=0.071  Sum_probs=117.3

Q ss_pred             CcccccCcCCCCCCCCCCCCccc-----ccCccccccchhhhcccccccccCCCceechhhccCCCEEEEeecCCCCcch
Q 015842          171 AVPRVCGCIQAPPVNEKVAPYSA-----IENISIQKLTPEYKIGMERLVKTKTPPMKALELWRESPAVLLCIRRPGCIMC  245 (399)
Q Consensus       171 ~~l~a~g~~~~a~~~~~~apl~~-----L~~i~l~~l~~~~~~g~~~~v~~~G~~VsLsdL~~~~pvVLvFyRg~gCP~C  245 (399)
                      ..+.+|.-....+.+|+.+|.|.     |.+.                   +|++++++++ +++++||.|+ ..|||.|
T Consensus        39 ~~l~~~~~~~~~l~vG~~aPdF~~~~~wL~d~-------------------dG~~vsLsdl-~GK~vLl~F~-atwC~~C   97 (352)
T 2hyx_A           39 AQLSNCSDGAAQLESCGTAPDLKGITGWLNTP-------------------GNKPIDLKSL-RGKVVLIDFW-AYSCINC   97 (352)
T ss_dssp             TTGGGSCBSCSSCCCCCBCCCCCSCCEEESSG-------------------GGCCCCGGGG-TTSEEEEEEE-CTTCHHH
T ss_pred             hhhhhhhhcccccCCCCcCCCccccccccCCC-------------------CCCEEcHHHh-CCCEEEEEEE-CCCChhH
Confidence            44555555455678899999766     3333                   4899999996 6667777777 6999999


Q ss_pred             HHHHHHHHhccchhhhcCCeEEEEecC------ChhhHHhhhcC-CCCCceeEeccchHHHHHhCCCccccccccccccc
Q 015842          246 RAEAHQLYAKKPIFDALGIQLFAVLHE------YIESEVKDFWP-RYWGGVVVYDQGMEFFKALGGGKLLKDKFLSGFLL  318 (399)
Q Consensus       246 r~el~~L~e~~pef~alGV~LVaIspE------~~e~~ik~F~~-~~l~f~VLsDp~r~lYkaLGl~r~~r~s~lsgfl~  318 (399)
                      +.++..|.++..++.+.|+.+|+|+..      +++ .++.|.+ ..++|+++.|++..+.++||+.             
T Consensus        98 ~~~~p~L~~l~~~~~~~~v~vi~Vs~d~~~~~d~~~-~~~~~~~~~~l~fpv~~D~~~~l~~~ygV~-------------  163 (352)
T 2hyx_A           98 QRAIPHVVGWYQAYKDSGLAVIGVHTPEYAFEKVPG-NVAKGAANLGISYPIALDNNYATWTNYRNR-------------  163 (352)
T ss_dssp             HHHHHHHHHHHHHHGGGTEEEEEEECCSSGGGGCHH-HHHHHHHHHTCCSCEEECTTSHHHHHTTCC-------------
T ss_pred             HHHHHHHHHHHHHhhcCCeEEEEEECCcccccCCHH-HHHHHHHHcCCCccEEeCCcHHHHHHcCCC-------------
Confidence            999999999999999889999999853      344 3677774 6789999999999999988773             


Q ss_pred             CHHHHHHHHHHHhcCCccccCCCCcccceEEEEecCCCcEEEEEecCCCCCCCCHHHHHHHHHhhhhhh
Q 015842          319 NPRAIANYKRARTLGVEQNFKGEGEIKGGLFIVGRGRSGIAYQFIERNFGDWAPLAEVIEICTQLQDQQ  387 (399)
Q Consensus       319 ~P~v~~~~~rA~~~G~~gn~~GD~~qLGGtFVId~gGg~I~yah~d~d~gDrad~eeVLaAl~~l~~~~  387 (399)
                                               .+|.+||||++| +|++.|...     .+.+++.+.++.+..+.
T Consensus       164 -------------------------~~Pt~~lID~~G-~Iv~~~~G~-----~~~~~l~~~I~~lL~e~  201 (352)
T 2hyx_A          164 -------------------------YWPAEYLIDATG-TVRHIKFGE-----GDYNVTETLVRQLLNDA  201 (352)
T ss_dssp             -------------------------EESEEEEECTTS-BEEEEEESB-----CCHHHHHHHHHHHHHHH
T ss_pred             -------------------------ccCEEEEEeCCC-eEEEEEcCC-----CCHHHHHHHHHHHHhhc
Confidence                                     147899999996 899998764     35678888777765444

>2p5q_A Glutathione peroxidase 5; thioredoxin fold, oxidoreductase; 2.00A {Populus trichocarpa x populusdeltoides} PDB: 2p5r_A

Probab=99.47  E-value=1.2e-13  Score=118.51  Aligned_cols=144  Identities=13%  Similarity=0.158  Sum_probs=98.3

Q ss_pred             CCCCCCCCCcccccCccccccchhhhcccccccccCCCceechhhccCCCEEEEeecCCCCcchHHHHHHHHhccchhhh
Q 015842          182 PPVNEKVAPYSAIENISIQKLTPEYKIGMERLVKTKTPPMKALELWRESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDA  261 (399)
Q Consensus       182 a~~~~~~apl~~L~~i~l~~l~~~~~~g~~~~v~~~G~~VsLsdL~~~~pvVLvFyRg~gCP~Cr~el~~L~e~~pef~a  261 (399)
                      .+++|+.+|.|.|.+.                   +|++++++++ +++++||.|+- .|||.|+.++..|.+++.++.+
T Consensus         5 ~~~~g~~~p~f~l~~~-------------------~g~~~~l~~~-~gk~vll~f~a-~~C~~C~~~~~~l~~l~~~~~~   63 (170)
T 2p5q_A            5 TSKNPESVHDFTVKDA-------------------KENDVDLSIF-KGKVLLIVNVA-SKCGMTNSNYAEMNQLYEKYKD   63 (170)
T ss_dssp             -----CCGGGCEEEBT-------------------TSCEEEGGGG-TTSEEEEEEEC-SSSTTHHHHHHHHHHHHHHHGG
T ss_pred             cCCCCccccceEEEcC-------------------CCCEecHHHh-CCCEEEEEEEe-ccCCccHHHHHHHHHHHHHhcc
Confidence            4567888886666655                   4999999996 66677776664 8999999999999999999999


Q ss_pred             cCCeEEEEecC--------ChhhHHhhhcC--CCCCceeE--eccchH----HHHHhCCCcccccccccccccCHHHHHH
Q 015842          262 LGIQLFAVLHE--------YIESEVKDFWP--RYWGGVVV--YDQGME----FFKALGGGKLLKDKFLSGFLLNPRAIAN  325 (399)
Q Consensus       262 lGV~LVaIspE--------~~e~~ik~F~~--~~l~f~VL--sDp~r~----lYkaLGl~r~~r~s~lsgfl~~P~v~~~  325 (399)
                      .|+++|+|+.+        +.+ .++.|.+  ..++|+++  .|++..    +|+.++-.                    
T Consensus        64 ~~~~vv~vs~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~--------------------  122 (170)
T 2p5q_A           64 QGLEILAFPCNQFGEEEPGTND-QITDFVCTRFKSEFPIFDKIDVNGENASPLYRFLKLG--------------------  122 (170)
T ss_dssp             GTEEEEEEECCTTTTCCCSCHH-HHHHHHHHHTCCCSCBBCCCBSSSTTBCHHHHHHHTH--------------------
T ss_pred             CCEEEEEEECCCCCCCCCCCHH-HHHHHHHHhcCCCceeEeeeccCCCchHHHHHHHHhc--------------------
Confidence            99999999863        344 3677765  46889998  677653    33322100                    


Q ss_pred             HHHHHhcCCccccCCCCcccc---eEEEEecCCCcEEEEEecCCCCCCCCHHHHHHHHHhhh
Q 015842          326 YKRARTLGVEQNFKGEGEIKG---GLFIVGRGRSGIAYQFIERNFGDWAPLAEVIEICTQLQ  384 (399)
Q Consensus       326 ~~rA~~~G~~gn~~GD~~qLG---GtFVId~gGg~I~yah~d~d~gDrad~eeVLaAl~~l~  384 (399)
                           ..|+.    |  ..+|   .+||||++| +|++.|...     .+.+++.+.++.+.
T Consensus       123 -----~~~~~----~--~~~p~~~~~~lid~~G-~i~~~~~g~-----~~~~~l~~~i~~ll  167 (170)
T 2p5q_A          123 -----KWGIF----G--DDIQWNFAKFLVNKDG-QVVDRYYPT-----TSPLSLERDIKQLL  167 (170)
T ss_dssp             -----HHHTT----C--SCCCSTTCEEEECTTS-CEEEEECTT-----SCGGGGHHHHHHHT
T ss_pred             -----CCCcc----C--CcccccccEEEECCCC-CEEEeeCCC-----CCHHHHHHHHHHHh
Confidence                 00110    1  1234   899999997 899988653     34566666666653

>3me7_A Putative uncharacterized protein; electron transfer protein, electron transport, structural GE PSI-2, protein structure initiative; 1.50A {Aquifex aeolicus} PDB: 3me8_A

Probab=99.47  E-value=3e-13  Score=119.23  Aligned_cols=146  Identities=12%  Similarity=0.081  Sum_probs=104.8

Q ss_pred             CCCCCCC-cccccCccccccchhhhcccccccccCCCceechhhccCCCEEEEeecCCCCc-chHHHHHHHHhccchhhh
Q 015842          184 VNEKVAP-YSAIENISIQKLTPEYKIGMERLVKTKTPPMKALELWRESPAVLLCIRRPGCI-MCRAEAHQLYAKKPIFDA  261 (399)
Q Consensus       184 ~~~~~ap-l~~L~~i~l~~l~~~~~~g~~~~v~~~G~~VsLsdL~~~~pvVLvFyRg~gCP-~Cr~el~~L~e~~pef~a  261 (399)
                      .+|+.+| .|.|++.                   +|++++++++ +++++| ++|-..||| .|+.++..|++++.++.+
T Consensus         2 ~~G~~~P~~f~l~d~-------------------~G~~v~l~~~-~Gk~vl-l~F~~t~C~~~C~~~~~~l~~~~~~~~~   60 (170)
T 3me7_A            2 SLGTYVPGDITLVDS-------------------YGNEFQLKNL-KGKPII-LSPIYTHCRAACPLITKSLLKVIPKLGT   60 (170)
T ss_dssp             CTTCBCCTTCEEEET-------------------TCCEEEGGGG-TTSCEE-EEEECTTCCSHHHHHHHHHHTTHHHHCC
T ss_pred             CCCCcCCCCeEEEcC-------------------CcCEEchHHh-CCCEEE-EEEECCCCCchhHHHHHHHHHHHHHhhh
Confidence            4678888 8887766                   5999999996 555555 455578998 699999999999999976


Q ss_pred             --cCCeEEEEecC---ChhhHHhhhcC-CCCCce---eE--ec--cchHHHHHhCCCcccccccccccccCHHHHHHHHH
Q 015842          262 --LGIQLFAVLHE---YIESEVKDFWP-RYWGGV---VV--YD--QGMEFFKALGGGKLLKDKFLSGFLLNPRAIANYKR  328 (399)
Q Consensus       262 --lGV~LVaIspE---~~e~~ik~F~~-~~l~f~---VL--sD--p~r~lYkaLGl~r~~r~s~lsgfl~~P~v~~~~~r  328 (399)
                        .++++|+|+.+   +++. ++.|.+ ...+++   ++  .|  ...+++++||+..           . +        
T Consensus        61 ~~~~~~vv~is~d~~d~~~~-~~~~~~~~~~~~~~w~~l~~~~~~~~~~~~~~~g~~~-----------~-~--------  119 (170)
T 3me7_A           61 PGKDFWVITFTFDPKDTLED-IKRFQKEYGIDGKGWKVVKAKTSEDLFKLLDAIDFRF-----------M-T--------  119 (170)
T ss_dssp             BTTTBEEEEEECCTTCCHHH-HHHHHHHTTCCSSSEEEEEESSHHHHHHHHHHTTCCC-----------E-E--------
T ss_pred             cCCceEEEEEECCCCCCHHH-HHHHHHHcCCCCCCeEEEeCCCHHHHHHHHHHCCeEE-----------e-c--------
Confidence              56999999964   4443 677764 344443   22  23  4468888888751           0 0        


Q ss_pred             HHhcCCccccCCCCcccceEEEEecCCCcEEEEEecCCCCCCCCHHHHHHHHHhhhh
Q 015842          329 ARTLGVEQNFKGEGEIKGGLFIVGRGRSGIAYQFIERNFGDWAPLAEVIEICTQLQD  385 (399)
Q Consensus       329 A~~~G~~gn~~GD~~qLGGtFVId~gGg~I~yah~d~d~gDrad~eeVLaAl~~l~~  385 (399)
                         .      .+.....|.+||||++| +|++.|...    .+++++|+++++++..
T Consensus       120 ---~------~~~~~~~~~~~lID~~G-~i~~~~~g~----~~~~~~i~~~l~~~~~  162 (170)
T 3me7_A          120 ---A------GNDFIHPNVVVVLSPEL-QIKDYIYGV----NYNYLEFVNALRLARG  162 (170)
T ss_dssp             ---E------TTEEECCCEEEEECTTS-BEEEEEESS----SCCHHHHHHHHHHHTT
T ss_pred             ---C------CCccccCceEEEECCCC-eEEEEEeCC----CCCHHHHHHHHHHhhc
Confidence               0      01122357899999997 899888554    4679999999988754

>2vup_A Glutathione peroxidase-like protein; oxidoreductase, trypanothione, dithiol-dependant peroxidase; 2.10A {Trypanosoma brucei}

Probab=99.46  E-value=3.8e-13  Score=119.92  Aligned_cols=149  Identities=11%  Similarity=0.093  Sum_probs=101.0

Q ss_pred             CCCCCCCCCcccccCccccccchhhhcccccccccCCCceechhhccCCCEEEEeecCCCCcchHHHHHHHHhccchhhh
Q 015842          182 PPVNEKVAPYSAIENISIQKLTPEYKIGMERLVKTKTPPMKALELWRESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDA  261 (399)
Q Consensus       182 a~~~~~~apl~~L~~i~l~~l~~~~~~g~~~~v~~~G~~VsLsdL~~~~pvVLvFyRg~gCP~Cr~el~~L~e~~pef~a  261 (399)
                      ..+.++.+|.|.|++.                   +|++++++++ +++++||.|+ ..|||.|+.++..|.+++.++.+
T Consensus        21 ~~~~~~~~p~f~l~~~-------------------~G~~~~l~~~-~Gk~vll~F~-atwC~~C~~~~~~l~~l~~~~~~   79 (190)
T 2vup_A           21 HMSAASSIFDFEVLDA-------------------DHKPYNLVQH-KGSPLLIYNV-ASKCGYTKGGYETATTLYNKYKS   79 (190)
T ss_dssp             ---CCCSGGGSCCBBT-------------------TSSBCCGGGG-TTSCEEEEEE-CSSSTTHHHHHHHHHHHHHHHGG
T ss_pred             cCCCCCcccCeEEEcC-------------------CCCEEEHHHc-CCCEEEEEEe-cCCCCccHHHHHHHHHHHHHHhc
Confidence            3456677786666554                   4999999996 6667666664 69999999999999999999999


Q ss_pred             cCCeEEEEecC--------ChhhHHhhhc-C-CCCCceeEe--ccchH----HHHHhCCCcccccccccccccCHHHHHH
Q 015842          262 LGIQLFAVLHE--------YIESEVKDFW-P-RYWGGVVVY--DQGME----FFKALGGGKLLKDKFLSGFLLNPRAIAN  325 (399)
Q Consensus       262 lGV~LVaIspE--------~~e~~ik~F~-~-~~l~f~VLs--Dp~r~----lYkaLGl~r~~r~s~lsgfl~~P~v~~~  325 (399)
                      .|+++|+|+.+        +++. +++|. + ..++|+++.  |++..    +|+.++                      
T Consensus        80 ~~v~vv~vs~d~~~~~~~~~~~~-~~~~~~~~~~~~~p~l~~~D~~~~~~~~~~~~l~----------------------  136 (190)
T 2vup_A           80 QGFTVLAFPCNQFGGQEPGNEEE-IKEFVCTKFKAEFPIMAKINVNGENAHPLYEYMK----------------------  136 (190)
T ss_dssp             GTCEEEEEECCCSTTCCCSCHHH-HHHHHHHHHCCCSCBBCCCBSSSTTBCHHHHHHH----------------------
T ss_pred             CCeEEEEEEcCccCCCCCCCHHH-HHHHHHHhcCCCeEEEeecccCcccccHHHHHHH----------------------
Confidence            99999999865        4443 67776 4 568899997  55543    333221                      


Q ss_pred             HHHHHhcCCccccCCCCcccceEEEEecCCCcEEEEEecCCCCCCCCHHHHHHHHHhhhh
Q 015842          326 YKRARTLGVEQNFKGEGEIKGGLFIVGRGRSGIAYQFIERNFGDWAPLAEVIEICTQLQD  385 (399)
Q Consensus       326 ~~rA~~~G~~gn~~GD~~qLGGtFVId~gGg~I~yah~d~d~gDrad~eeVLaAl~~l~~  385 (399)
                         ....|+.+..  +.--.|.+||||++| +|++.+..     ..+.+++.+.++.+-+
T Consensus       137 ---~~~~~v~~~P--~i~~~~~~~lid~~G-~i~~~~~g-----~~~~~~l~~~i~~ll~  185 (190)
T 2vup_A          137 ---KTKPGILKTK--AIKWNFTSFLIDRDG-VPVERFSP-----GASVKDIEKKLIPLLE  185 (190)
T ss_dssp             ---HHSCCGGGCC--SCCSTTCEEEECTTS-CEEEEECT-----TCCHHHHHHHHHHHHH
T ss_pred             ---hhcCCcCCCc--cccccceEEEECCCC-cEEEEECC-----CCCHHHHHHHHHHHHh
Confidence               1001111100  000134899999997 89998764     3457788888877654

>1kng_A Thiol:disulfide interchange protein CYCY; thioredoxin fold, cytochrome C maturation, atomic resolution oxidoreductase; 1.14A {Bradyrhizobium japonicum} SCOP: c.47.1.10

Probab=99.44  E-value=1.7e-12  Score=109.55  Aligned_cols=144  Identities=15%  Similarity=0.110  Sum_probs=100.9

Q ss_pred             CCCCCCCCCCcccccCccccccchhhhcccccccccCCCceechhhccCCCEEEEeecCCCCcchHHHHHHHHhccchhh
Q 015842          181 APPVNEKVAPYSAIENISIQKLTPEYKIGMERLVKTKTPPMKALELWRESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFD  260 (399)
Q Consensus       181 ~a~~~~~~apl~~L~~i~l~~l~~~~~~g~~~~v~~~G~~VsLsdL~~~~pvVLvFyRg~gCP~Cr~el~~L~e~~pef~  260 (399)
                      ..+.+|+.+|.+.+++..-..+.           ...|+.+++.++ +++++||.|+ ..|||.|+.++..|.++..+  
T Consensus         6 ~~~~~g~~~p~f~l~~~~g~~~~-----------~~~~~~~~l~~~-~gk~~ll~f~-~~~C~~C~~~~~~l~~l~~~--   70 (156)
T 1kng_A            6 PSALIGRPAPQTALPPLEGLQAD-----------NVQVPGLDPAAF-KGKVSLVNVW-ASWCVPCHDEAPLLTELGKD--   70 (156)
T ss_dssp             ------CBCCCCCBCCCTTCEET-----------TEECCCBCGGGG-TTSCEEEEEE-CTTCHHHHHHHHHHHHHTTC--
T ss_pred             hhHHhCCCCCCceeeeccCcccc-----------cccCceechHHh-CCCEEEEEEE-cccCHhHHHHHHHHHHHHhc--
Confidence            35678888996666555100000           001389999996 5678887777 59999999999999988765  


Q ss_pred             hcCCeEEEEecCChhhHHhhhcC-CCCCce-eEeccchHHHHHhCCCcccccccccccccCHHHHHHHHHHHhcCCcccc
Q 015842          261 ALGIQLFAVLHEYIESEVKDFWP-RYWGGV-VVYDQGMEFFKALGGGKLLKDKFLSGFLLNPRAIANYKRARTLGVEQNF  338 (399)
Q Consensus       261 alGV~LVaIspE~~e~~ik~F~~-~~l~f~-VLsDp~r~lYkaLGl~r~~r~s~lsgfl~~P~v~~~~~rA~~~G~~gn~  338 (399)
                       .++.+|+|+.+.....++.|.. ..++|+ ++.|+...+++.||+.                                 
T Consensus        71 -~~v~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~---------------------------------  116 (156)
T 1kng_A           71 -KRFQLVGINYKDAADNARRFLGRYGNPFGRVGVDANGRASIEWGVY---------------------------------  116 (156)
T ss_dssp             -TTSEEEEEEESCCHHHHHHHHHHHCCCCSEEEEETTSHHHHHTTCC---------------------------------
T ss_pred             -CCeEEEEEECCCCHHHHHHHHHHcCCCCceeeeCchhHHHHhcCcC---------------------------------
Confidence             3599999996544444777774 678898 9999999999988773                                 


Q ss_pred             CCCCcccceEEEEecCCCcEEEEEecCCCCCCCCHHHHHHHHHhhh
Q 015842          339 KGEGEIKGGLFIVGRGRSGIAYQFIERNFGDWAPLAEVIEICTQLQ  384 (399)
Q Consensus       339 ~GD~~qLGGtFVId~gGg~I~yah~d~d~gDrad~eeVLaAl~~l~  384 (399)
                           ..|.+||||++| +|++.+.+.     .+.+++.+.++.+.
T Consensus       117 -----~~P~~~~id~~G-~i~~~~~g~-----~~~~~l~~~l~~~l  151 (156)
T 1kng_A          117 -----GVPETFVVGREG-TIVYKLVGP-----ITPDNLRSVLLPQM  151 (156)
T ss_dssp             -----SSCEEEEECTTS-BEEEEEESC-----CCHHHHHHTHHHHH
T ss_pred             -----ccCeEEEEcCCC-CEEEEEeCC-----CCHHHHHHHHHHHH
Confidence                 147899999996 899887653     35677777766654

>3dwv_A Glutathione peroxidase-like protein; alpha beta, 3-layer(ABA) sandwich, glutaredoxin fold, oxidor peroxidase; 1.41A {Trypanosoma brucei} PDB: 2rm5_A 2rm6_A 3e0u_A

Probab=99.44  E-value=4.2e-13  Score=119.59  Aligned_cols=146  Identities=12%  Similarity=0.131  Sum_probs=101.3

Q ss_pred             CCCCCCCCCCcccccCccccccchhhhcccccccccCCCceechhhccCCCEEEEeecCCCCcchHHHHHHHHhccchhh
Q 015842          181 APPVNEKVAPYSAIENISIQKLTPEYKIGMERLVKTKTPPMKALELWRESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFD  260 (399)
Q Consensus       181 ~a~~~~~~apl~~L~~i~l~~l~~~~~~g~~~~v~~~G~~VsLsdL~~~~pvVLvFyRg~gCP~Cr~el~~L~e~~pef~  260 (399)
                      .....+..+|.|.|++.                   +|++++++++ +++++||.| -..|||.|..++..|.+++.+++
T Consensus        18 ~~~~~~~~~p~f~l~d~-------------------~G~~~~l~~~-~Gk~vlv~F-~atwC~~C~~~~p~l~~l~~~~~   76 (187)
T 3dwv_A           18 KKMSAASSIFDFEVLDA-------------------DHKPYNLVQH-KGSPLLIYN-VASKCGYTKGGYETATTLYNKYK   76 (187)
T ss_dssp             --CTTCCSGGGSCCBBT-------------------TSCBCCGGGG-TTSCEEEEE-ECCBCSCCTTHHHHHHHHHHHHG
T ss_pred             hhhcCCCccCCeEEEcC-------------------CCCEeeHHHh-CCCEEEEEE-ecCCCCCcHHHHHHHHHHHHHhh
Confidence            34556677886666655                   4999999995 666655555 58999999999999999999999


Q ss_pred             hcCCeEEEEecC--------ChhhHHhhhcC-C-CCCceeEe--ccchH----HHHHhCCCcccccccccccccCHHHHH
Q 015842          261 ALGIQLFAVLHE--------YIESEVKDFWP-R-YWGGVVVY--DQGME----FFKALGGGKLLKDKFLSGFLLNPRAIA  324 (399)
Q Consensus       261 alGV~LVaIspE--------~~e~~ik~F~~-~-~l~f~VLs--Dp~r~----lYkaLGl~r~~r~s~lsgfl~~P~v~~  324 (399)
                      +.|+++|+|+.+        +.+ .+++|.+ + .++|++++  |.+..    +|+.+                      
T Consensus        77 ~~~~~vi~is~d~~~~~e~~~~~-~~~~~~~~~~~~~~p~~~~~d~~~~~~~~~~~~l----------------------  133 (187)
T 3dwv_A           77 SQGFTVLAFPSNQFGGQEPGNEE-EIKEFVCTKFKAEFPIMAKINVNGENAHPLYEYM----------------------  133 (187)
T ss_dssp             GGTCEEEEEEBCCCSSCSSSBTT-HHHHSCCBCCCCSSCBBCCBCCSCC-CCHHHHHH----------------------
T ss_pred             hCCeEEEEEECcccCCCCCCCHH-HHHHHHHhccCCCCceeeccccCCcchhHHHHHH----------------------
Confidence            999999999853        344 4788886 5 78999997  44332    22211                      


Q ss_pred             HHHHHHhcCCccccCCCCcccc---eEEEEecCCCcEEEEEecCCCCCCCCHHHHHHHHHhhh
Q 015842          325 NYKRARTLGVEQNFKGEGEIKG---GLFIVGRGRSGIAYQFIERNFGDWAPLAEVIEICTQLQ  384 (399)
Q Consensus       325 ~~~rA~~~G~~gn~~GD~~qLG---GtFVId~gGg~I~yah~d~d~gDrad~eeVLaAl~~l~  384 (399)
                         +....+..    | .-.+|   .+||||++| +|++.|...     .++++|.+.++.+-
T Consensus       134 ---~~~~~~~~----~-~~~iP~~~~~~liD~~G-~i~~~~~g~-----~~~~~l~~~i~~lL  182 (187)
T 3dwv_A          134 ---KKTKPGIL----A-TKAIKWNFTSFLIDRDG-VPVERFSPG-----ASVKDIEEKLIPLL  182 (187)
T ss_dssp             ---HHHSCCSB----S-SSSCCSTTCEEEECTTS-CEEEEECTT-----CCHHHHHHHHHHHC
T ss_pred             ---HhhcCCcc----C-CCccccceeEEEECCCC-CEEEEECCC-----CCHHHHHHHHHHHH
Confidence               11000110    1 01245   999999997 899998743     56778888777664

>3cmi_A Peroxiredoxin HYR1; thioredoxin-like fold, oxidoreductase, peroxidase, redox-ACT center; 2.02A {Saccharomyces cerevisiae}

Probab=99.44  E-value=2.3e-13  Score=118.73  Aligned_cols=125  Identities=14%  Similarity=0.136  Sum_probs=83.1

Q ss_pred             CCCceechhhccCCCEEEEeecCCCCcchHHHHHHHHhccchhhhcCCeEEEEec--------CChhhHHhhhc-C-CCC
Q 015842          217 KTPPMKALELWRESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLH--------EYIESEVKDFW-P-RYW  286 (399)
Q Consensus       217 ~G~~VsLsdL~~~~pvVLvFyRg~gCP~Cr~el~~L~e~~pef~alGV~LVaIsp--------E~~e~~ik~F~-~-~~l  286 (399)
                      +|++++++++ +++++||.|+ ..|||.|+ ++..|.+++.++.+.|+.+|+|+.        ++++ .++.|. + ..+
T Consensus        21 ~G~~~~l~~~-~Gk~vll~F~-a~wC~~C~-~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~d~~~-~~~~~~~~~~~~   96 (171)
T 3cmi_A           21 KGQPFPFDQL-KGKVVLIVNV-ASKCGFTP-QYKELEALYKRYKDEGFTIIGFPCNQFGHQEPGSDE-EIAQFCQLNYGV   96 (171)
T ss_dssp             TSCBCCGGGG-TTCEEEEEEE-ESSSCCHH-HHHHHHHHHHHHGGGTEEEEEEEECSCC-------------------CC
T ss_pred             CCCEecHHHc-CCCEEEEEEE-ecCCCcch-hHHHHHHHHHHhccCCeEEEEEECcccCCCCCCCHH-HHHHHHHhccCC
Confidence            4999999996 6677777777 89999999 999999999999999999999986        3333 367776 4 578


Q ss_pred             CceeEeccch------HHHHHhCCCcccccccccccccCHHHHHHHHHHHhcCCccccCCCCcccc------eEEEEecC
Q 015842          287 GGVVVYDQGM------EFFKALGGGKLLKDKFLSGFLLNPRAIANYKRARTLGVEQNFKGEGEIKG------GLFIVGRG  354 (399)
Q Consensus       287 ~f~VLsDp~r------~lYkaLGl~r~~r~s~lsgfl~~P~v~~~~~rA~~~G~~gn~~GD~~qLG------GtFVId~g  354 (399)
                      +|++++|++.      .+|+.+.                         ....|+        ...|      .+||||++
T Consensus        97 ~~p~~~d~d~~~~~~~~~~~~~~-------------------------~~~~~v--------~~~P~i~~~~~~~lid~~  143 (171)
T 3cmi_A           97 TFPIMKKIDVNGGNEDPVYKFLK-------------------------SQKSGM--------LGLRGIKWNFEKFLVDKK  143 (171)
T ss_dssp             CSCBBCCCBSSSTTBCHHHHHHH-------------------------HHSCCS--------SSCCSCCSTTCEEEECSS
T ss_pred             CceEEeeccCCCccchHHHHHHH-------------------------hccCCc--------CCCCcccccceEEEECCC
Confidence            8999997652      2232110                         000111        1234      89999999


Q ss_pred             CCcEEEEEecCCCCCCCCHHHHHHHHHhhh
Q 015842          355 RSGIAYQFIERNFGDWAPLAEVIEICTQLQ  384 (399)
Q Consensus       355 Gg~I~yah~d~d~gDrad~eeVLaAl~~l~  384 (399)
                      | +|++.+...     .+.+++.+.++.+.
T Consensus       144 G-~i~~~~~g~-----~~~~~l~~~i~~ll  167 (171)
T 3cmi_A          144 G-KVYERYSSL-----TKPSSLSETIEELL  167 (171)
T ss_dssp             S-CEEEEECTT-----SCGGGGHHHHHHHH
T ss_pred             C-CEEEEeCCC-----CCHHHHHHHHHHHH
Confidence            6 899988652     34566666666654

>2k6v_A Putative cytochrome C oxidase assembly protein; thioredoxin fold, electron transfer protein, metal binding protein, electron transport; NMR {Thermus thermophilus}

Probab=99.44  E-value=2.3e-13  Score=117.11  Aligned_cols=147  Identities=12%  Similarity=0.040  Sum_probs=107.2

Q ss_pred             CCCCCCCCcccccCccccccchhhhcccccccccCCCceechhhccCCCEEEEeecCCCCcc-hHHHHHHHHhccchhhh
Q 015842          183 PVNEKVAPYSAIENISIQKLTPEYKIGMERLVKTKTPPMKALELWRESPAVLLCIRRPGCIM-CRAEAHQLYAKKPIFDA  261 (399)
Q Consensus       183 ~~~~~~apl~~L~~i~l~~l~~~~~~g~~~~v~~~G~~VsLsdL~~~~pvVLvFyRg~gCP~-Cr~el~~L~e~~pef~a  261 (399)
                      +.+|+.+|.+.|.+.                   +| +++++++ ++++ ||++|...|||. |+.++..|.+++.++.+
T Consensus        10 ~~~G~~~p~f~l~~~-------------------~g-~~~l~~~-~gk~-vll~f~~~~C~~~C~~~~~~l~~~~~~~~~   67 (172)
T 2k6v_A           10 RLLNPKPVDFALEGP-------------------QG-PVRLSQF-QDKV-VLLFFGFTRCPDVCPTTLLALKRAYEKLPP   67 (172)
T ss_dssp             EEEEEEECCCEEECS-------------------SS-EEEGGGS-TTSE-EEEEEECTTCSSHHHHHHHHHHHHHTTSCH
T ss_pred             cccCCCCCCeEEEcC-------------------CC-CCcHHHh-CCCE-EEEEEECCCCcchhHHHHHHHHHHHHHhhh
Confidence            345777776665554                   49 9999996 5555 555556889995 99999999999999987


Q ss_pred             c---CCeEEEEecC----ChhhHHhhhcC-CCCCceeEeccc---hHHHHHhCCCcccccccccccccCHHHHHHHHHHH
Q 015842          262 L---GIQLFAVLHE----YIESEVKDFWP-RYWGGVVVYDQG---MEFFKALGGGKLLKDKFLSGFLLNPRAIANYKRAR  330 (399)
Q Consensus       262 l---GV~LVaIspE----~~e~~ik~F~~-~~l~f~VLsDp~---r~lYkaLGl~r~~r~s~lsgfl~~P~v~~~~~rA~  330 (399)
                      .   ++++|+|+.+    +++. ++.|.+ ..++|++++|++   ..++++||+...          ..+.         
T Consensus        68 ~~~~~v~vv~is~d~~~d~~~~-~~~~~~~~~~~~~~l~d~~~~~~~~~~~~gv~~~----------~~~~---------  127 (172)
T 2k6v_A           68 KAQERVQVIFVSVDPERDPPEV-ADRYAKAFHPSFLGLSGSPEAVREAAQTFGVFYQ----------KSQY---------  127 (172)
T ss_dssp             HHHTTEEEEEEESCTTTCCHHH-HHHHHHHHCTTEEEECCCHHHHHHHHHHHTCCEE----------EEEE---------
T ss_pred             hccCCEEEEEEEECCCCCCHHH-HHHHHHHhCCCcEEEeCCHHHHHHHHHhcCeEEE----------eccC---------
Confidence            6   7999999943    4443 777775 568999999999   689999998520          0000         


Q ss_pred             hcCCccccCCCC---cccceEEEEecCCCcEEEEEecCCCCCCCCHHHHHHHHHhh
Q 015842          331 TLGVEQNFKGEG---EIKGGLFIVGRGRSGIAYQFIERNFGDWAPLAEVIEICTQL  383 (399)
Q Consensus       331 ~~G~~gn~~GD~---~qLGGtFVId~gGg~I~yah~d~d~gDrad~eeVLaAl~~l  383 (399)
                            . .++.   ...|.+|||| +| +|++.|....   .++.++|++.++++
T Consensus       128 ------~-~~~~~~i~~~P~~~lid-~G-~i~~~~~g~~---~~~~~~l~~~l~~l  171 (172)
T 2k6v_A          128 ------R-GPGEYLVDHTATTFVVK-EG-RLVLLYSPDK---AEATDRVVADLQAL  171 (172)
T ss_dssp             ------E-ETTEEEEEECCCEEEEE-TT-EEEEEECHHH---HTCHHHHHHHHHHC
T ss_pred             ------C-CCCCceEecCCEEEEEE-CC-EEEEEECCCC---CCCHHHHHHHHHHh
Confidence                  0 0111   2369999999 86 8999987653   45788998888764

>2ggt_A SCO1 protein homolog, mitochondrial; copper chaperone, Cu-binding protein, mitochondrial assembly factor, redox, nickel, disuplhide, mitochondrion; 2.40A {Homo sapiens} SCOP: c.47.1.10 PDB: 2gqk_A 2gql_A 2gqm_A 2gt5_A 2gt6_A 2gvp_A 2hrf_A 2hrn_A 1wp0_A

Probab=99.44  E-value=1.1e-12  Score=111.99  Aligned_cols=135  Identities=8%  Similarity=-0.009  Sum_probs=98.6

Q ss_pred             CCCceechhhccCCCEEEEeecCCCCcc-hHHHHHHHHhccchhhh----cCCeEEEEecCC----hhhHHhhhcC-CCC
Q 015842          217 KTPPMKALELWRESPAVLLCIRRPGCIM-CRAEAHQLYAKKPIFDA----LGIQLFAVLHEY----IESEVKDFWP-RYW  286 (399)
Q Consensus       217 ~G~~VsLsdL~~~~pvVLvFyRg~gCP~-Cr~el~~L~e~~pef~a----lGV~LVaIspE~----~e~~ik~F~~-~~l  286 (399)
                      +|++++++++ +++++||.|+ ..|||. |+.++..|++++.++.+    .++++|+|+.+.    ++ .++.|.+ ..+
T Consensus        12 ~G~~~~l~~~-~gk~vll~f~-~~~C~~~C~~~~~~l~~l~~~~~~~~~~~~~~vv~vs~d~~~d~~~-~~~~~~~~~~~   88 (164)
T 2ggt_A           12 TGERKTDKDY-LGQWLLIYFG-FTHCPDVCPEELEKMIQVVDEIDSITTLPDLTPLFISIDPERDTKE-AIANYVKEFSP   88 (164)
T ss_dssp             TSCEEEGGGG-TTCEEEEEEE-CTTCSSHHHHHHHHHHHHHHHHHHSSSSCCEEEEEEESCTTTCCHH-HHHHHHHTTCS
T ss_pred             CCCEEeHHHc-CCCEEEEEEE-eCCCCchhHHHHHHHHHHHHHHhhccCCCcEEEEEEEeCCCCCCHH-HHHHHHHHcCC
Confidence            4999999996 5566666555 589997 99999999999999987    499999999654    44 3777775 567


Q ss_pred             CceeE---eccchHHHHHhCCCcccccccccccccCHHHHHHHHHHHhcCCccccCCCC--cccceEEEEecCCCcEEEE
Q 015842          287 GGVVV---YDQGMEFFKALGGGKLLKDKFLSGFLLNPRAIANYKRARTLGVEQNFKGEG--EIKGGLFIVGRGRSGIAYQ  361 (399)
Q Consensus       287 ~f~VL---sDp~r~lYkaLGl~r~~r~s~lsgfl~~P~v~~~~~rA~~~G~~gn~~GD~--~qLGGtFVId~gGg~I~ya  361 (399)
                      +|+++   .|+...+.++||+...            |.             ..+..++.  ...+.+||||++| +|++.
T Consensus        89 ~~~~l~~~~d~~~~~~~~~~v~~~------------p~-------------~~~~~~~~~~~~~~~~~lid~~G-~i~~~  142 (164)
T 2ggt_A           89 KLVGLTGTREEVDQVARAYRVYYS------------PG-------------PKDEDEDYIVDHTIIMYLIGPDG-EFLDY  142 (164)
T ss_dssp             SCEEEECCHHHHHHHHHTTTCCEE------------EE-------------EECTTSCEEEEECCEEEEECTTS-CEEEE
T ss_pred             CeEEEeCCHHHHHHHHHhcCeEEE------------ec-------------CCCCCCCeeEeccceEEEECCCC-eEEEE
Confidence            88988   4777789999988521            10             00000110  1236899999996 89998


Q ss_pred             EecCCCCCCCCHHHHHHHHHhhhh
Q 015842          362 FIERNFGDWAPLAEVIEICTQLQD  385 (399)
Q Consensus       362 h~d~d~gDrad~eeVLaAl~~l~~  385 (399)
                      |...     .+.++|++.++.+..
T Consensus       143 ~~g~-----~~~~~l~~~l~~ll~  161 (164)
T 2ggt_A          143 FGQN-----KRKGEIAASIATHMR  161 (164)
T ss_dssp             EETT-----CCHHHHHHHHHHHHG
T ss_pred             eCCC-----CCHHHHHHHHHHHHH
Confidence            8643     467899888887754

>2h30_A Thioredoxin, peptide methionine sulfoxide reductase MSRA/MSRB; reduced, thiol-disulfide exchange, oxidoreductase; 1.60A {Neisseria gonorrhoeae} PDB: 2jzr_A 2jzs_A 2k9f_A 2fy6_A

Probab=99.44  E-value=8.3e-13  Score=112.70  Aligned_cols=122  Identities=13%  Similarity=0.138  Sum_probs=98.0

Q ss_pred             CCCceechhhccCCCEEEEeecCCCCcchHHHHHHHHhccchhhhcCCeEEEEecC------ChhhHHhhhcC-CCCC-c
Q 015842          217 KTPPMKALELWRESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLHE------YIESEVKDFWP-RYWG-G  288 (399)
Q Consensus       217 ~G~~VsLsdL~~~~pvVLvFyRg~gCP~Cr~el~~L~e~~pef~alGV~LVaIspE------~~e~~ik~F~~-~~l~-f  288 (399)
                      +|+++++.++ +++++||.|+ ..|||.|+.++..|.++..++...|+++|+|+..      +.+ .++.|.. ..++ +
T Consensus        27 ~g~~~~~~~~-~gk~vlv~F~-a~~C~~C~~~~~~l~~l~~~~~~~~~~vv~v~~~~~~~~~~~~-~~~~~~~~~~~~~~  103 (164)
T 2h30_A           27 DNRPASVYLK-KDKPTLIKFW-ASWCPLCLSELGQAEKWAQDAKFSSANLITVASPGFLHEKKDG-EFQKWYAGLNYPKL  103 (164)
T ss_dssp             TSSBGGGGCC-TTSCEEEEEC-CTTCHHHHHHHHHHHHHHTCGGGTTSEEEEEECTTSTTCCCTT-HHHHHHTTSCCTTS
T ss_pred             CCCEeeHHHh-CCCEEEEEEE-CCCCHHHHHHHHHHHHHHHHcccCCcEEEEEEcCCCccccCHH-HHHHHHHhCCCCcc
Confidence            5899999885 6778888888 8999999999999999999999999999999842      233 3566554 4666 8


Q ss_pred             eeEeccchHHHHHhCCCcccccccccccccCHHHHHHHHHHHhcCCccccCCCCcccceEEEEecCCCcEEEEEecCCCC
Q 015842          289 VVVYDQGMEFFKALGGGKLLKDKFLSGFLLNPRAIANYKRARTLGVEQNFKGEGEIKGGLFIVGRGRSGIAYQFIERNFG  368 (399)
Q Consensus       289 ~VLsDp~r~lYkaLGl~r~~r~s~lsgfl~~P~v~~~~~rA~~~G~~gn~~GD~~qLGGtFVId~gGg~I~yah~d~d~g  368 (399)
                      +++.|++..+.+.||+.                                      ..|.+||||++| +|++.+.+.   
T Consensus       104 ~~~~d~~~~~~~~~~v~--------------------------------------~~P~~~lid~~G-~i~~~~~g~---  141 (164)
T 2h30_A          104 PVVTDNGGTIAQNLNIS--------------------------------------VYPSWALIGKDG-DVQRIVKGS---  141 (164)
T ss_dssp             CEEECTTCHHHHHTTCC--------------------------------------SSSEEEEECTTS-CEEEEEESC---
T ss_pred             eEEEcCchHHHHHcCCC--------------------------------------ccceEEEECCCC-cEEEEEcCC---
Confidence            99999999999988873                                      147899999996 899988653   


Q ss_pred             CCCCHHHHHHHHHhhhh
Q 015842          369 DWAPLAEVIEICTQLQD  385 (399)
Q Consensus       369 Drad~eeVLaAl~~l~~  385 (399)
                        .+.+++.+.++.+..
T Consensus       142 --~~~~~l~~~i~~~~~  156 (164)
T 2h30_A          142 --INEAQALALIRNPNA  156 (164)
T ss_dssp             --CCHHHHHHHHHCTTC
T ss_pred             --CCHHHHHHHHHHHHH
Confidence              367888888877643

>2p31_A CL683, glutathione peroxidase 7; thioredoxin fold, NPGPX, phospholipid hydroperoxidase, struc genomics, structural genomics consortium, SGC; 2.00A {Homo sapiens}

Probab=99.41  E-value=2.9e-13  Score=119.82  Aligned_cols=146  Identities=12%  Similarity=-0.029  Sum_probs=94.6

Q ss_pred             CCCCCCCCCcccccCccccccchhhhcccccccccCCCceechhhccCCCEEEEeecCCCCcchHHHHHHHHhccchhhh
Q 015842          182 PPVNEKVAPYSAIENISIQKLTPEYKIGMERLVKTKTPPMKALELWRESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDA  261 (399)
Q Consensus       182 a~~~~~~apl~~L~~i~l~~l~~~~~~g~~~~v~~~G~~VsLsdL~~~~pvVLvFyRg~gCP~Cr~el~~L~e~~pef~a  261 (399)
                      .+++|+.+|.|.|++.                   +|++++++++ ++++ ||++|...|||.|+.++..|.+++.++.+
T Consensus        22 ~~~~g~~~p~f~l~~~-------------------~G~~~~l~~~-~Gk~-vlv~F~atwC~~C~~~~p~l~~l~~~~~~   80 (181)
T 2p31_A           22 SMQQEQDFYDFKAVNI-------------------RGKLVSLEKY-RGSV-SLVVNVASECGFTDQHYRALQQLQRDLGP   80 (181)
T ss_dssp             -----CCGGGCEEEBT-------------------TSCEEEGGGG-TTSE-EEEEEECSSSTTHHHHHHHHHHHHHHHGG
T ss_pred             cCCcCCccCceEeecC-------------------CCCEecHHHc-CCCE-EEEEEeccCCCCcHHHHHHHHHHHHHhhc
Confidence            5678888997766665                   4999999995 5555 55555688999999999999999999999


Q ss_pred             cCCeEEEEecC--------ChhhHHhhhcC--CCCCceeEec--cchHHHHHhCCCcccccccccccccCHHHHHHHHHH
Q 015842          262 LGIQLFAVLHE--------YIESEVKDFWP--RYWGGVVVYD--QGMEFFKALGGGKLLKDKFLSGFLLNPRAIANYKRA  329 (399)
Q Consensus       262 lGV~LVaIspE--------~~e~~ik~F~~--~~l~f~VLsD--p~r~lYkaLGl~r~~r~s~lsgfl~~P~v~~~~~rA  329 (399)
                      .|+++|+|+.+        +.+ .++.|.+  ..++|+++.|  .+.....                   +. +......
T Consensus        81 ~~v~vv~vs~d~~~~~e~~~~~-~~~~~~~~~~~~~~p~~~~~d~~g~~~~-------------------~~-~~~~~~~  139 (181)
T 2p31_A           81 HHFNVLAFPCNQFGQQEPDSNK-EIESFARRTYSVSFPMFSKIAVTGTGAH-------------------PA-FKYLAQT  139 (181)
T ss_dssp             GTEEEEEEECCCSTTCCCSCHH-HHHHHHHHHHCCCSCBBCCCCCSSTTSC-------------------HH-HHHHHHH
T ss_pred             CCEEEEEEECcCCCCCCCCCHH-HHHHHHHhhcCCCceeEeecccCCccch-------------------hh-hhhhhhc
Confidence            99999999864        343 3666663  4678999864  3322100                   00 0000000


Q ss_pred             HhcCCccccCCCCcccceEEEEecCCCcEEEEEecCCCCCCCCHHHHHHHHHhh
Q 015842          330 RTLGVEQNFKGEGEIKGGLFIVGRGRSGIAYQFIERNFGDWAPLAEVIEICTQL  383 (399)
Q Consensus       330 ~~~G~~gn~~GD~~qLGGtFVId~gGg~I~yah~d~d~gDrad~eeVLaAl~~l  383 (399)
                          +++...   |. -.+||||++| +|++.|...     .+++++.+.++++
T Consensus       140 ----~P~~~~---~~-~~~~lid~~G-~i~~~~~g~-----~~~~~l~~~i~~l  179 (181)
T 2p31_A          140 ----SGKEPT---WN-FWKYLVAPDG-KVVGAWDPT-----VSVEEVRPQITAL  179 (181)
T ss_dssp             ----HSCCCC---ST-TCEEEECTTS-CEEEEECTT-----SCHHHHHHHHHTT
T ss_pred             ----CCCccc---cc-eeEEEEcCCC-CEEEEeCCC-----CCHHHHHHHHHHH
Confidence                100000   00 0799999997 899988753     4678888887764

>2rli_A SCO2 protein homolog, mitochondrial; copper protein, thioredoxin fold, metal transport, structural genomics, spine2-complexes; NMR {Homo sapiens}

Probab=99.40  E-value=5e-12  Score=108.78  Aligned_cols=137  Identities=7%  Similarity=-0.000  Sum_probs=99.8

Q ss_pred             CCCceechhhccCCCEEEEeecCCCCcc-hHHHHHHHHhccchhhh----cCCeEEEEecC----ChhhHHhhhcC-CCC
Q 015842          217 KTPPMKALELWRESPAVLLCIRRPGCIM-CRAEAHQLYAKKPIFDA----LGIQLFAVLHE----YIESEVKDFWP-RYW  286 (399)
Q Consensus       217 ~G~~VsLsdL~~~~pvVLvFyRg~gCP~-Cr~el~~L~e~~pef~a----lGV~LVaIspE----~~e~~ik~F~~-~~l  286 (399)
                      +|++++++++ +++ +||++|...|||. |+.++..|++++.++.+    .++++|+|+.+    +++ .++.|.+ ..+
T Consensus        15 ~G~~~~l~~~-~gk-~vll~F~~~~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~vv~is~d~~~d~~~-~~~~~~~~~~~   91 (171)
T 2rli_A           15 RGRARCKADF-RGQ-WVLMYFGFTHCPDICPDELEKLVQVVRQLEAEPGLPPVQPVFITVDPERDDVE-AMARYVQDFHP   91 (171)
T ss_dssp             TSCEEETTTT-TTS-EEEEEEECTTCSSSHHHHHHHHHHHHHHHHHSTTSCCEEEEEEESCSTTCCHH-HHHHHHHTTCT
T ss_pred             CCCEEeHHHh-CCC-EEEEEEEcCCCCchhHHHHHHHHHHHHHHhhccCCCceEEEEEEECCCCCCHH-HHHHHHHHcCC
Confidence            4999999996 544 4555666899997 99999999999999976    59999999965    344 3777775 567


Q ss_pred             CceeEeccc---hHHHHHhCCCcccccccccccccCHHHHHHHHHHHhcCCccccCCC--CcccceEEEEecCCCcEEEE
Q 015842          287 GGVVVYDQG---MEFFKALGGGKLLKDKFLSGFLLNPRAIANYKRARTLGVEQNFKGE--GEIKGGLFIVGRGRSGIAYQ  361 (399)
Q Consensus       287 ~f~VLsDp~---r~lYkaLGl~r~~r~s~lsgfl~~P~v~~~~~rA~~~G~~gn~~GD--~~qLGGtFVId~gGg~I~ya  361 (399)
                      +|++++|..   ..++++||+...            |.             .....++  ....|.+||||++| +|++.
T Consensus        92 ~~~~l~~~~~~~~~~~~~~~v~~~------------p~-------------~~~~~~~~~~~~~~~~~lid~~G-~i~~~  145 (171)
T 2rli_A           92 RLLGLTGSTKQVAQASHSYRVYYN------------AG-------------PKDEDQDYIVDHSIAIYLLNPDG-LFTDY  145 (171)
T ss_dssp             TCCEEECCHHHHHHHHHHSCCCCE------------EC-------------CCCSSCCCCEECCCEEEEECTTS-CEEEE
T ss_pred             CeEEEeCCHHHHHHHHHHhCeEEE------------ec-------------CCCCCCCeEEeccceEEEECCCC-eEEEE
Confidence            889998754   578999998521            10             0000111  12357999999996 89998


Q ss_pred             EecCCCCCCCCHHHHHHHHHhhhhhh
Q 015842          362 FIERNFGDWAPLAEVIEICTQLQDQQ  387 (399)
Q Consensus       362 h~d~d~gDrad~eeVLaAl~~l~~~~  387 (399)
                      |...     .+.++|++.++++..+.
T Consensus       146 ~~g~-----~~~~~l~~~l~~ll~~~  166 (171)
T 2rli_A          146 YGRS-----RSAEQISDSVRRHMAAF  166 (171)
T ss_dssp             EESS-----CCHHHHHHHHHHHHHHH
T ss_pred             ECCC-----CCHHHHHHHHHHHHHHH
Confidence            8654     46789998888876543

>3kij_A Probable glutathione peroxidase 8; human PDI-peroxidase, membrane, oxidoreductase, transmembrane; 1.80A {Homo sapiens} SCOP: c.47.1.0 PDB: 3cyn_A

Probab=99.38  E-value=1.4e-12  Score=115.19  Aligned_cols=92  Identities=9%  Similarity=-0.040  Sum_probs=71.5

Q ss_pred             CCCCCCCCCcccccCccccccchhhhcccccccccCCCceechhhccCCCEEEEeecCCCCcchHHHHHHHHhccchhhh
Q 015842          182 PPVNEKVAPYSAIENISIQKLTPEYKIGMERLVKTKTPPMKALELWRESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDA  261 (399)
Q Consensus       182 a~~~~~~apl~~L~~i~l~~l~~~~~~g~~~~v~~~G~~VsLsdL~~~~pvVLvFyRg~gCP~Cr~el~~L~e~~pef~a  261 (399)
                      ...+|..+|.|.|++.                   +|++++++++ ++ ++||++|...|||.|+.++..|.+++.++.+
T Consensus        11 ~~~~~~~~p~f~l~d~-------------------~G~~v~l~~~-~G-k~vlv~F~atwC~~C~~~~p~l~~l~~~~~~   69 (180)
T 3kij_A           11 LKPKINSFYAFEVKDA-------------------KGRTVSLEKY-KG-KVSLVVNVASDCQLTDRNYLGLKELHKEFGP   69 (180)
T ss_dssp             CCCCCCCGGGCEEEBT-------------------TSCEEEGGGG-TT-SEEEEEEECSSSTTHHHHHHHHHHHHHHHTT
T ss_pred             hcCCcCcccceEEecC-------------------CCCEecHHHc-CC-CEEEEEEEecCCCCcHHHHHHHHHHHHHhcc
Confidence            4456667776665554                   4999999996 44 5677778889999999999999999999999


Q ss_pred             cCCeEEEEec--------CChhhHHhhhcC--CCCCceeEeccc
Q 015842          262 LGIQLFAVLH--------EYIESEVKDFWP--RYWGGVVVYDQG  295 (399)
Q Consensus       262 lGV~LVaIsp--------E~~e~~ik~F~~--~~l~f~VLsDp~  295 (399)
                      .|+.+|+|+.        ++++. ++.|.+  ..++|+++.|.+
T Consensus        70 ~~~~vi~is~d~~~~~~~d~~~~-~~~~~~~~~~~~~~~~~~~d  112 (180)
T 3kij_A           70 SHFSVLAFPCNQFGESEPRPSKE-VESFARKNYGVTFPIFHKIK  112 (180)
T ss_dssp             TSEEEEEEECCCSTTCCCSCHHH-HHHHHHHHHCCCSCBBCCCC
T ss_pred             CCeEEEEEECCccccCCCCCHHH-HHHHHHHhcCCCCceeeeee
Confidence            9999999984        35543 677763  568888887543

>2b7k_A SCO1 protein; metallochaperone, cytochrome C oxidase, metal binding protein; 1.80A {Saccharomyces cerevisiae} SCOP: c.47.1.10 PDB: 2b7j_A

Probab=99.36  E-value=3.8e-12  Score=114.93  Aligned_cols=141  Identities=9%  Similarity=0.038  Sum_probs=91.3

Q ss_pred             CCCceechhhccCCCEEEEeecCCCCcc-hHHHHHHHHhccchhhhc---CCeEEEEecC----ChhhHHhhhcC-CCCC
Q 015842          217 KTPPMKALELWRESPAVLLCIRRPGCIM-CRAEAHQLYAKKPIFDAL---GIQLFAVLHE----YIESEVKDFWP-RYWG  287 (399)
Q Consensus       217 ~G~~VsLsdL~~~~pvVLvFyRg~gCP~-Cr~el~~L~e~~pef~al---GV~LVaIspE----~~e~~ik~F~~-~~l~  287 (399)
                      +|++++++++ +++++||.| ...|||. |+.++..|.+++.++.+.   ++++|+|+.+    +++ .++.|.+ ...+
T Consensus        30 ~G~~v~l~~~-~Gk~vlv~F-~at~C~~vC~~~~~~l~~l~~~~~~~~~~~v~vv~Is~D~~~d~~~-~~~~~~~~~~~~  106 (200)
T 2b7k_A           30 YGNEFTEKNL-LGKFSIIYF-GFSNCPDICPDELDKLGLWLNTLSSKYGITLQPLFITCDPARDSPA-VLKEYLSDFHPS  106 (200)
T ss_dssp             TSCEEEGGGG-TTSCEEEEE-ECTTCCSHHHHHHHHHHHHHHHHHHHHCCCCEEEEEESCTTTCCHH-HHHHHHTTSCTT
T ss_pred             CCCEEeHHHc-CCCEEEEEE-ECCCCcchhHHHHHHHHHHHHHHHHhhCCceEEEEEECCCCCCCHH-HHHHHHHHcCCC
Confidence            4999999996 666665555 5889996 999999999999999864   8999999976    454 3778875 4567


Q ss_pred             ceeEe---ccchHHHHHhCCCcccccccccccccCHHHHHHHHHHHhcCCccccCCCCcccceEEEEecCCCcEEEEEec
Q 015842          288 GVVVY---DQGMEFFKALGGGKLLKDKFLSGFLLNPRAIANYKRARTLGVEQNFKGEGEIKGGLFIVGRGRSGIAYQFIE  364 (399)
Q Consensus       288 f~VLs---Dp~r~lYkaLGl~r~~r~s~lsgfl~~P~v~~~~~rA~~~G~~gn~~GD~~qLGGtFVId~gGg~I~yah~d  364 (399)
                      |..+.   |....+.++||+..    .      . |....       .|.  ++  .....|.+||||++| +|++.|..
T Consensus       107 ~~~l~~~~d~~~~~~~~~gv~~----~------~-p~~~~-------~~~--~~--~~~~~~~~~liD~~G-~i~~~~~g  163 (200)
T 2b7k_A          107 ILGLTGTFDEVKNACKKYRVYF----S------T-PPNVK-------PGQ--DY--LVDHSIFFYLMDPEG-QFVDALGR  163 (200)
T ss_dssp             CEEEECCHHHHHHHHHHTTC------------------------------------CTTTCCCEEEECTTS-CEEEEECT
T ss_pred             ceEEeCCHHHHHHHHHHcCcEE----e------e-ccccC-------CCC--Cc--eeeecceEEEECCCC-cEEEEeCC
Confidence            77776   45678999999841    0      1 21000       000  00  011247999999997 89988764


Q ss_pred             CCCCCCCCHHHHHHHHHhhh
Q 015842          365 RNFGDWAPLAEVIEICTQLQ  384 (399)
Q Consensus       365 ~d~gDrad~eeVLaAl~~l~  384 (399)
                      . .....-.++|.+.++.+.
T Consensus       164 ~-~~~~~~~~~i~~~l~~l~  182 (200)
T 2b7k_A          164 N-YDEKTGVDKIVEHVKSYV  182 (200)
T ss_dssp             T-CCTTHHHHHHHHHHHHCC
T ss_pred             C-CCHHHHHHHHHHHHHHhh
Confidence            3 222222344444444443

>2f8a_A Glutathione peroxidase 1; thioredoxin fold, structural genomics, structural genomics consortium, SGC, oxidoreductase; 1.50A {Homo sapiens} SCOP: c.47.1.10 PDB: 1gp1_A 2he3_A

Probab=99.36  E-value=8.4e-12  Score=114.39  Aligned_cols=170  Identities=9%  Similarity=-0.009  Sum_probs=98.8

Q ss_pred             cccccCcCCCCCCCCCCCCcccccCccccccchhhhcccccccccC-CCceechhhccCCCEEEEeecCCCCcchHHHHH
Q 015842          172 VPRVCGCIQAPPVNEKVAPYSAIENISIQKLTPEYKIGMERLVKTK-TPPMKALELWRESPAVLLCIRRPGCIMCRAEAH  250 (399)
Q Consensus       172 ~l~a~g~~~~a~~~~~~apl~~L~~i~l~~l~~~~~~g~~~~v~~~-G~~VsLsdL~~~~pvVLvFyRg~gCP~Cr~el~  250 (399)
                      +++.++|--   ..++.+|.|.|++.                   + |++++++++ +++++||.|+ ..|||.|+.++.
T Consensus        12 ~~~~~~~~~---~~~~~~p~f~l~~~-------------------~~G~~v~l~~~-~Gk~vlv~Fw-atwC~~C~~e~p   67 (208)
T 2f8a_A           12 DLGTENLYF---QSMQSVYAFSARPL-------------------AGGEPVSLGSL-RGKVLLIENV-ASLGGTTVRDYT   67 (208)
T ss_dssp             -------------CCCCGGGCEECBT-------------------TCSSCEEGGGG-TTSEEEEEEE-CSSSTTHHHHHH
T ss_pred             cccccccch---hhcCccCceEeeeC-------------------CCCCCccHHHc-CCCEEEEEEE-CCCCccHHHHHH
Confidence            445554443   34566887666655                   5 899999996 6555555554 889999999999


Q ss_pred             HHHhccchhhhcCCeEEEEecC--------ChhhHHhhhc-------CCCCCceeEeccch------HHHHHhCCCcc-c
Q 015842          251 QLYAKKPIFDALGIQLFAVLHE--------YIESEVKDFW-------PRYWGGVVVYDQGM------EFFKALGGGKL-L  308 (399)
Q Consensus       251 ~L~e~~pef~alGV~LVaIspE--------~~e~~ik~F~-------~~~l~f~VLsDp~r------~lYkaLGl~r~-~  308 (399)
                      .|.+++.++.+.|+++|+|+.+        +.+ .++.|.       +..++|++++|.+.      .+|+.++-... .
T Consensus        68 ~l~~l~~~~~~~g~~vv~v~~d~~~~~e~d~~~-~i~~f~~~~~~~~~~~~~fp~l~d~d~~g~~~~~~~~~l~~~~~~~  146 (208)
T 2f8a_A           68 QMNELQRRLGPRGLVVLGFPCNQFGHQENAKNE-EILNSLKYVRPGGGFEPNFMLFEKCEVNGAGAHPLFAFLREALPAP  146 (208)
T ss_dssp             HHHHHHHHHGGGTEEEEEEECCCSTTTTCSCHH-HHHHHHHHTSSCTTCCCSSEEBCCCCCSSTTCCHHHHHHHHHSCSC
T ss_pred             HHHHHHHHccCCCeEEEEEECCcccccCCCCHH-HHHHHHHhcccccccccceEEEEEeecCCCCccHHHHHHHhcCCCc
Confidence            9999999999999999999863        233 377776       34678999986542      24443211000 0


Q ss_pred             ccccccccccCHHHHHHHHHHHhcCC-cccc-CCCCcccceEEEEecCCCcEEEEEecCCCCCCCCHHHHHHHHHhhh
Q 015842          309 KDKFLSGFLLNPRAIANYKRARTLGV-EQNF-KGEGEIKGGLFIVGRGRSGIAYQFIERNFGDWAPLAEVIEICTQLQ  384 (399)
Q Consensus       309 r~s~lsgfl~~P~v~~~~~rA~~~G~-~gn~-~GD~~qLGGtFVId~gGg~I~yah~d~d~gDrad~eeVLaAl~~l~  384 (399)
                      ... ...++..+.           ++ .+.+ +++..-.|.+||||++| +|++.|...     .++++|.+.++.+.
T Consensus       147 ~~~-~~~~~~~~~-----------~~~~~~~~~~~i~~~p~tflID~~G-~i~~~~~g~-----~~~~~l~~~I~~ll  206 (208)
T 2f8a_A          147 SDD-ATALMTDPK-----------LITWSPVCRNDVAWNFEKFLVGPDG-VPLRRYSRR-----FQTIDIEPDIEALL  206 (208)
T ss_dssp             TTC-SSCCCSSGG-----------GCCSSSCCTTCCCSTTCEEEECTTS-CEEEEECTT-----SCGGGGHHHHHHHH
T ss_pred             ccc-chhhccccc-----------cccccccccCccccCceEEEEcCCC-cEEEEeCCC-----CCHHHHHHHHHHHh
Confidence            000 000000000           00 0001 11222248999999997 899998753     34456666666553

>2i3y_A Epididymal secretory glutathione peroxidase; thioredoxin fold, epididymal androgen related protein, struc genomics, structural genomics consortium; 2.00A {Homo sapiens}

Probab=99.34  E-value=2e-11  Score=113.39  Aligned_cols=159  Identities=11%  Similarity=-0.041  Sum_probs=100.0

Q ss_pred             CCCCCCCcccccCccccccchhhhcccccccccC-CCceechhhccCCCEEEEeecCCCCcchHHHHHHHHhccchhhhc
Q 015842          184 VNEKVAPYSAIENISIQKLTPEYKIGMERLVKTK-TPPMKALELWRESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDAL  262 (399)
Q Consensus       184 ~~~~~apl~~L~~i~l~~l~~~~~~g~~~~v~~~-G~~VsLsdL~~~~pvVLvFyRg~gCP~Cr~el~~L~e~~pef~al  262 (399)
                      .....+|.|.|++.                   + |++|+|+++ +++ +||++|--.|||+|+ ++.+|++++.++.+.
T Consensus        30 ~~~~~~pdF~l~d~-------------------~~G~~v~Lsd~-~GK-vvll~FwAt~C~~c~-e~p~L~~l~~~~~~~   87 (215)
T 2i3y_A           30 DEKGTIYDYEAIAL-------------------NKNEYVSFKQY-VGK-HILFVNVATYCGLTA-QYPELNALQEELKPY   87 (215)
T ss_dssp             CCCCCGGGCEEEBS-------------------SSSCEEEGGGG-TTS-EEEEEEECSSSGGGG-GHHHHHHHHHHHGGG
T ss_pred             cccCCcCCcEeeeC-------------------CCCCEEcHHHh-CCC-EEEEEEeCCCCCChH-hHHHHHHHHHHhccC
Confidence            44556786666655                   6 899999996 555 455555688999999 999999999999999


Q ss_pred             CCeEEEEec--------CChhhHHhhhcC-------CCCCceeEeccc------hHHHHHhCCCcccccccccccccCHH
Q 015842          263 GIQLFAVLH--------EYIESEVKDFWP-------RYWGGVVVYDQG------MEFFKALGGGKLLKDKFLSGFLLNPR  321 (399)
Q Consensus       263 GV~LVaIsp--------E~~e~~ik~F~~-------~~l~f~VLsDp~------r~lYkaLGl~r~~r~s~lsgfl~~P~  321 (399)
                      |+.+|+|+.        ++.+ .++.|.+       ..++|++++|.+      ..+|+.+.-..    ....+.+..|.
T Consensus        88 g~~Vlgvs~d~f~~~e~~~~~-~i~~f~~~~~~~~~~~~~fpll~d~d~~g~~~~~~~~~l~~~~----~~~~~~~g~~~  162 (215)
T 2i3y_A           88 GLVVLGFPCNQFGKQEPGDNK-EILPGLKYVRPGGGFVPSFQLFEKGDVNGEKEQKVFSFLKHSC----PHPSEILGTFK  162 (215)
T ss_dssp             TEEEEEEECCCSTTCCCSCHH-HHHHHHHHTSSCTTCCCSSEEBCCCCSSSTTCCHHHHHHHHHS----CCSCSCCCCTT
T ss_pred             CeEEEEEEccccCcCCCCCHH-HHHHHHHhccchhccCccceeEeeeccCCcccchHHHHHHhhC----ccccccccccc
Confidence            999999984        2333 3777764       457999998754      23454331100    00000000000


Q ss_pred             HHHHHHHHHhcCCccccC-CCCcccceEEEEecCCCcEEEEEecCCCCCCCCHHHHHHHHHhhhh
Q 015842          322 AIANYKRARTLGVEQNFK-GEGEIKGGLFIVGRGRSGIAYQFIERNFGDWAPLAEVIEICTQLQD  385 (399)
Q Consensus       322 v~~~~~rA~~~G~~gn~~-GD~~qLGGtFVId~gGg~I~yah~d~d~gDrad~eeVLaAl~~l~~  385 (399)
                                ..+.+... ++..-.|.+||||++| +|++.|...     .++++|.+.++.+..
T Consensus       163 ----------~~~~~p~~~~~i~~npttfLID~~G-~vv~~~~g~-----~~~~~l~~~I~~ll~  211 (215)
T 2i3y_A          163 ----------SISWDPVKVHDIRWNFEKFLVGPDG-IPVMRWSHR-----ATVSSVKTDILAYLK  211 (215)
T ss_dssp             ----------TCCSSSCCTTCCCSTTCEEEECTTS-CEEEEECTT-----SCHHHHHHHHHHHGG
T ss_pred             ----------ccccccccccccccCceEEEECCCC-eEEEEeCCC-----CCHHHHHHHHHHHHH
Confidence                      00000000 1111137899999997 899988643     456788777777653

>2r37_A Glutathione peroxidase 3; plasma, structural genomics consort oxidoreductase, secreted, selenium, selenocysteine; 1.85A {Homo sapiens}

Probab=99.31  E-value=3.4e-11  Score=110.87  Aligned_cols=145  Identities=12%  Similarity=-0.005  Sum_probs=90.4

Q ss_pred             C-CCceechhhccCCCEEEEeecCCCCcchHHHHHHHHhccchhhhcCCeEEEEec--------CChhhHHhhhcC----
Q 015842          217 K-TPPMKALELWRESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLH--------EYIESEVKDFWP----  283 (399)
Q Consensus       217 ~-G~~VsLsdL~~~~pvVLvFyRg~gCP~Cr~el~~L~e~~pef~alGV~LVaIsp--------E~~e~~ik~F~~----  283 (399)
                      + |++|+|+++ +++ +||++|-..|||.| .++.+|++++.++.+.|+.+|+|+.        ++.+ .++.|.+    
T Consensus        26 ~~G~~v~Ls~~-kGK-vvll~F~At~C~~c-~e~p~L~~l~~~~~~~g~~vlgvs~d~f~~~e~~~~~-~i~~f~~~~~~  101 (207)
T 2r37_A           26 DGEEYIPFKQY-AGK-YVLFVNVASYGGLT-GQYIELNALQEELAPFGLVILGFPCNQFGKQEPGENS-EILPTLKYVRP  101 (207)
T ss_dssp             TSSCEEEGGGG-TTS-EEEEEEECSSSTTT-THHHHHHHHHHHHGGGTEEEEEEECCCBTTCCCSCHH-HHHHHHHHTSS
T ss_pred             CCCCEEcHHHh-CCC-EEEEEEeCCCCCCh-HHHHHHHHHHHHhccCCEEEEEEECcccCcCCCCCHH-HHHHHHHhcch
Confidence            6 899999996 554 55555668899999 7999999999999999999999983        3333 3777764    


Q ss_pred             ---CCCCceeEeccc------hHHHHHhCCCcccccccccccccCHHHHHHHHHHHhcCCccccC-CCCcccceEEEEec
Q 015842          284 ---RYWGGVVVYDQG------MEFFKALGGGKLLKDKFLSGFLLNPRAIANYKRARTLGVEQNFK-GEGEIKGGLFIVGR  353 (399)
Q Consensus       284 ---~~l~f~VLsDp~------r~lYkaLGl~r~~r~s~lsgfl~~P~v~~~~~rA~~~G~~gn~~-GD~~qLGGtFVId~  353 (399)
                         ..++|++++|.+      ..+|+.+.-..    ....+....|..         . +..... ++..-.|.+||||+
T Consensus       102 ~~~~~~~fp~l~d~d~~g~~~~~~~~~l~~~~----~~~~~~~g~~~~---------~-~~~p~~~~~i~~~~ttflID~  167 (207)
T 2r37_A          102 GGGFVPNFQLFEKGDVNGEKEQKFYTFLKNSC----PPTSELLGTSDR---------L-FWEPMKVHDIRWNFEKFLVGP  167 (207)
T ss_dssp             CTTCCCSSEEBCCCCSSSTTCCHHHHHHHHHS----CCSCSCCCCGGG---------B-CCSSCCTTCCCSTTCEEEECT
T ss_pred             hhccCccceeeeEeccCCcccchHHHHHHhhC----cccccccccccc---------c-cccccccCcccccceEEEECC
Confidence               468999998754      23444331100    000000000000         0 000000 11111378999999


Q ss_pred             CCCcEEEEEecCCCCCCCCHHHHHHHHHhhhh
Q 015842          354 GRSGIAYQFIERNFGDWAPLAEVIEICTQLQD  385 (399)
Q Consensus       354 gGg~I~yah~d~d~gDrad~eeVLaAl~~l~~  385 (399)
                      +| +|++.|...     .+++++.+.++.+..
T Consensus       168 ~G-~i~~~~~g~-----~~~~~l~~~I~~ll~  193 (207)
T 2r37_A          168 DG-IPIMRWHHR-----TTVSNVKMDILSYMR  193 (207)
T ss_dssp             TS-CEEEEECTT-----SCHHHHHHHHHHHHH
T ss_pred             CC-cEEEEECCC-----CCHHHHHHHHHHHHh
Confidence            97 899988643     456777777766643

>1i5g_A Tryparedoxin II; electron transport; HET: TS5; 1.40A {Crithidia fasciculata} SCOP: c.47.1.10 PDB: 1o6j_A 1o81_A 1oc8_A 1oc9_B 1fg4_A 1oc9_A

Probab=99.28  E-value=5e-12  Score=106.33  Aligned_cols=108  Identities=10%  Similarity=0.001  Sum_probs=81.7

Q ss_pred             CCCceechhhccCCCEEEEeecCCCCcchHHHHHHHHhccchhhh-cCCeEEEEecCChhhHHhhhcC-C-CCCceeEe-
Q 015842          217 KTPPMKALELWRESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDA-LGIQLFAVLHEYIESEVKDFWP-R-YWGGVVVY-  292 (399)
Q Consensus       217 ~G~~VsLsdL~~~~pvVLvFyRg~gCP~Cr~el~~L~e~~pef~a-lGV~LVaIspE~~e~~ik~F~~-~-~l~f~VLs-  292 (399)
                      +|++++++++ +++++||.|+. .|||.|+.++..|.++..++.+ .++.+|+|+.+.....++.|.+ . ...++++. 
T Consensus        17 ~g~~~~l~~~-~gk~vll~F~a-~wC~~C~~~~~~l~~l~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~   94 (144)
T 1i5g_A           17 AAADIALPSL-AGKTVFFYFSA-SWCPPSRAFTPQLIDFYKAHAEKKNFEVMLISWDESAEDFKDYYAKMPWLALPFEDR   94 (144)
T ss_dssp             TEEEEEGGGG-TTSEEEEEEEC-TTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCSSHHHHHHHHTTCSSEECCTTCH
T ss_pred             CCCEecHHHc-CCCEEEEEEEC-CCCHHHHHHHHHHHHHHHHhccCCCEEEEEEeCCCCHHHHHHHHHhCCccccccCch
Confidence            4899999996 66677777665 8999999999999999988884 6999999998754444777775 2 23455554 


Q ss_pred             ccchHHHHHhCCCcccccccccccccCHHHHHHHHHHHhcCCccccCCCCcccceEEEEe-cCCCcEEEEEecC
Q 015842          293 DQGMEFFKALGGGKLLKDKFLSGFLLNPRAIANYKRARTLGVEQNFKGEGEIKGGLFIVG-RGRSGIAYQFIER  365 (399)
Q Consensus       293 Dp~r~lYkaLGl~r~~r~s~lsgfl~~P~v~~~~~rA~~~G~~gn~~GD~~qLGGtFVId-~gGg~I~yah~d~  365 (399)
                      |+...+.++||+.                                      .+|.+|||| ++| +|++.+...
T Consensus        95 d~~~~~~~~~~v~--------------------------------------~~P~~~lid~~~G-~i~~~~~~~  129 (144)
T 1i5g_A           95 KGMEFLTTGFDVK--------------------------------------SIPTLVGVEADSG-NIITTQART  129 (144)
T ss_dssp             HHHHHHHHHTTCC--------------------------------------SSSEEEEEETTTC-CEEESCHHH
T ss_pred             HHHHHHHHHcCCC--------------------------------------CCCEEEEEECCCC-cEEeccchh
Confidence            6677777777663                                      147899999 886 788876543

>4hde_A SCO1/SENC family lipoprotein; structural genomics, the center for structural genomics of I diseases, csgid, niaid; HET: MSE; 1.32A {Bacillus anthracis}

Probab=99.25  E-value=2.7e-10  Score=100.79  Aligned_cols=149  Identities=11%  Similarity=0.113  Sum_probs=92.5

Q ss_pred             CCCCCCcccccCccccccchhhhcccccccccCCCceechhhccCCCEEEEeecCCCCc-chHHHHHHHHhccchhhhcC
Q 015842          185 NEKVAPYSAIENISIQKLTPEYKIGMERLVKTKTPPMKALELWRESPAVLLCIRRPGCI-MCRAEAHQLYAKKPIFDALG  263 (399)
Q Consensus       185 ~~~~apl~~L~~i~l~~l~~~~~~g~~~~v~~~G~~VsLsdL~~~~pvVLvFyRg~gCP-~Cr~el~~L~e~~pef~alG  263 (399)
                      .+..+|.|.|.|.                   +|++|+++++ +++++||.|+ ..||| .|..++..|.+++..+++.|
T Consensus         8 ~~~~~PdF~L~d~-------------------~G~~v~l~d~-~Gk~vll~F~-~t~Cp~~Cp~~~~~l~~l~~~~~~~~   66 (170)
T 4hde_A            8 LNWDLETFQFTNQ-------------------DGKPFGTKDL-KGKVWVADFM-FTNCQTVCPPMTANMAKLQKMAKEEK   66 (170)
T ss_dssp             CCBCCCCCEEECT-------------------TSCEEEHHHH-TTSCEEEEEE-CTTCSSSHHHHHHHHHHHHHHHHHTT
T ss_pred             CCCcCCCcEEECC-------------------CCCEEeHHHh-CCCEEEEEEE-CCCCCCcccHHHHHHHHHHHhhhccc
Confidence            4666786666665                   5999999996 6667777665 56887 68888888888777776655


Q ss_pred             --CeEEEEec----CChhhHHhhhcCC----CCCceeEeccchH-HHHHhCCCcccccccccccccCHHHHHHHHHHHhc
Q 015842          264 --IQLFAVLH----EYIESEVKDFWPR----YWGGVVVYDQGME-FFKALGGGKLLKDKFLSGFLLNPRAIANYKRARTL  332 (399)
Q Consensus       264 --V~LVaIsp----E~~e~~ik~F~~~----~l~f~VLsDp~r~-lYkaLGl~r~~r~s~lsgfl~~P~v~~~~~rA~~~  332 (399)
                        +++|+|+-    ++++. +++|.+.    +..+..+++++.. +++.+                         +....
T Consensus        67 ~~v~~v~isvDp~~Dtp~~-l~~y~~~~~~~~~~~~~ltg~~~~~~~~~~-------------------------~~~~~  120 (170)
T 4hde_A           67 LDVQFVSFSVDPDLDKPEN-LKAFIQKFTEDTSNWNLLTGYSLEDITKFS-------------------------KDNFQ  120 (170)
T ss_dssp             CCCEEEEEESCTTTCCHHH-HHHHHTTTCSCCTTEEEEBCSCHHHHHHHH-------------------------HHHHC
T ss_pred             ccceeEeeecCcccccHHH-HHHHHHHcCCCCCCceecCcccHHHHHHHH-------------------------Hhccc
Confidence              77888884    35554 6777642    2233445554432 11111                         00000


Q ss_pred             CCc-cccCCCCcccceEEEEecCCCcEEEEEecCCCCCCCCHHHHHHHHHhhh
Q 015842          333 GVE-QNFKGEGEIKGGLFIVGRGRSGIAYQFIERNFGDWAPLAEVIEICTQLQ  384 (399)
Q Consensus       333 G~~-gn~~GD~~qLGGtFVId~gGg~I~yah~d~d~gDrad~eeVLaAl~~l~  384 (399)
                      ... ....|...-.+.+||||++| +|+..|....   ..+.++|++.+++|.
T Consensus       121 ~~~~~~~~~~~~H~~~~~liD~~G-~i~~~~~g~~---~~~~~~l~~~ik~Ll  169 (170)
T 4hde_A          121 SLVDKPENGQVIHGTSFYLIDQNG-KVMKKYSGIS---NTPYEDIIRDMKRLA  169 (170)
T ss_dssp             CCCBCCTTSCCBCCCEEEEECTTS-CEEEEEESSS---SCCHHHHHHHHHHHH
T ss_pred             ccccCCCCceEEeeeEEEEEcCCC-eEEEEECCCC---CCCHHHHHHHHHHHh
Confidence            111 11112222247899999997 8998887643   356788988888763

>1o8x_A Tryparedoxin, TRYX, TXNI; tryparedoxin-I, synchrotron radiation, disulfide bonds tryparedoxin, thioredoxin, trypanosome; 1.3A {Crithidia fasciculata} SCOP: c.47.1.10 PDB: 1okd_A 1qk8_A 1o85_A 1o8w_A 1o7u_A 1ezk_A 1ewx_A

Probab=99.24  E-value=8.1e-12  Score=105.51  Aligned_cols=109  Identities=9%  Similarity=0.026  Sum_probs=81.7

Q ss_pred             CCCceechhhccCCCEEEEeecCCCCcchHHHHHHHHhccchhhh-cCCeEEEEecCChhhHHhhhcC-C-CCCceeEe-
Q 015842          217 KTPPMKALELWRESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDA-LGIQLFAVLHEYIESEVKDFWP-R-YWGGVVVY-  292 (399)
Q Consensus       217 ~G~~VsLsdL~~~~pvVLvFyRg~gCP~Cr~el~~L~e~~pef~a-lGV~LVaIspE~~e~~ik~F~~-~-~l~f~VLs-  292 (399)
                      +| .++++++ +++++||.|+. .|||.|+.++..|.++..++.+ .++++|+|+.+.....++.|.+ . ...++++. 
T Consensus        18 ~g-~~~l~~~-~gk~vll~F~a-~wC~~C~~~~p~l~~l~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~   94 (146)
T 1o8x_A           18 DG-EVEVKSL-AGKLVFFYFSA-SWCPPARGFTPQLIEFYDKFHESKNFEVVFCTWDEEEDGFAGYFAKMPWLAVPFAQS   94 (146)
T ss_dssp             TE-EEEGGGG-TTCEEEEEEEC-TTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCCSHHHHHHHHTTCSSEECCGGGH
T ss_pred             CC-CCcHHHh-CCCEEEEEEEc-cCCHHHHHHHHHHHHHHHHhhhcCCeEEEEEeCCCCHHHHHHHHHHCCceeeccchh
Confidence            48 9999996 66677777765 8999999999999999988883 6899999998754444777775 2 23455554 


Q ss_pred             ccchHHHHHhCCCcccccccccccccCHHHHHHHHHHHhcCCccccCCCCcccceEEEEe-cCCCcEEEEEecCCC
Q 015842          293 DQGMEFFKALGGGKLLKDKFLSGFLLNPRAIANYKRARTLGVEQNFKGEGEIKGGLFIVG-RGRSGIAYQFIERNF  367 (399)
Q Consensus       293 Dp~r~lYkaLGl~r~~r~s~lsgfl~~P~v~~~~~rA~~~G~~gn~~GD~~qLGGtFVId-~gGg~I~yah~d~d~  367 (399)
                      |++..+.+.||+.                                      .+|.+|||| ++| +|++.+.....
T Consensus        95 d~~~~~~~~~~v~--------------------------------------~~Pt~~lid~~~G-~i~~~~~~~~~  131 (146)
T 1o8x_A           95 EAVQKLSKHFNVE--------------------------------------SIPTLIGVDADSG-DVVTTRARATL  131 (146)
T ss_dssp             HHHHHHHHHTTCC--------------------------------------SSSEEEEEETTTC-CEEESCHHHHH
T ss_pred             hHHHHHHHHhCCC--------------------------------------CCCEEEEEECCCC-eEEEecchhHH
Confidence            6677777777663                                      147899999 886 88887655433

>3s9f_A Tryparedoxin; thioredoxin fold, disulfide reductase, electron transport; 1.80A {Leishmania major}

Probab=99.20  E-value=6.6e-12  Score=109.88  Aligned_cols=126  Identities=8%  Similarity=-0.043  Sum_probs=86.9

Q ss_pred             CcCCCCCCCCCCCCcc-cccCccccccchhhhcccccccccCCCceechhhccCCCEEEEeecCCCCcchHHHHHHHHhc
Q 015842          177 GCIQAPPVNEKVAPYS-AIENISIQKLTPEYKIGMERLVKTKTPPMKALELWRESPAVLLCIRRPGCIMCRAEAHQLYAK  255 (399)
Q Consensus       177 g~~~~a~~~~~~apl~-~L~~i~l~~l~~~~~~g~~~~v~~~G~~VsLsdL~~~~pvVLvFyRg~gCP~Cr~el~~L~e~  255 (399)
                      |+......+|+.+|.+ .|.+.                   +| +++++++ +++++||.|+ ..|||.|+.++..|.++
T Consensus        16 ~~~~~~~~vG~~~P~f~~l~~~-------------------~g-~v~l~~~-~gk~vll~F~-a~wC~~C~~~~p~l~~l   73 (165)
T 3s9f_A           16 PRGSHMSGVAKHLGEALKLRKQ-------------------AD-TADMDSL-SGKTVFFYFS-ASWCPPCRGFTPQLVEF   73 (165)
T ss_dssp             ------CHHHHHHHHTSCEEET-------------------TE-EECSGGG-TTSEEEEEEE-CTTCHHHHHHHHHHHHH
T ss_pred             ccchhhhhhcccCCcceeeecC-------------------CC-cccHHHc-CCCEEEEEEE-CCcChhHHHHHHHHHHH
Confidence            3334455667777755 45444                   48 9999996 6667776666 89999999999999999


Q ss_pred             cchhhh-cCCeEEEEecCChhhHHhhhcC-C-CCCceeEeccc-hHHHHHhCCCcccccccccccccCHHHHHHHHHHHh
Q 015842          256 KPIFDA-LGIQLFAVLHEYIESEVKDFWP-R-YWGGVVVYDQG-MEFFKALGGGKLLKDKFLSGFLLNPRAIANYKRART  331 (399)
Q Consensus       256 ~pef~a-lGV~LVaIspE~~e~~ik~F~~-~-~l~f~VLsDp~-r~lYkaLGl~r~~r~s~lsgfl~~P~v~~~~~rA~~  331 (399)
                      +.++.+ .++.+|+|+.+.....++.|.+ . ...++++.|.. ..+.+.||+.                          
T Consensus        74 ~~~~~~~~~v~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~--------------------------  127 (165)
T 3s9f_A           74 YEKHHDSKNFEIILASWDEEEDDFNAYYAKMPWLSIPFANRNIVEALTKKYSVE--------------------------  127 (165)
T ss_dssp             HHHHTTTTTEEEEEEECCCSHHHHHHHHTTCSSEECCTTCHHHHHHHHHHTTCC--------------------------
T ss_pred             HHHhccCCCeEEEEEecCCCHHHHHHHHHhCCCcccccCchhHHHHHHHHcCCC--------------------------
Confidence            999986 7999999998766555677765 2 22344443333 5666666552                          


Q ss_pred             cCCccccCCCCcccceEEEEecC-CCcEEEEEe
Q 015842          332 LGVEQNFKGEGEIKGGLFIVGRG-RSGIAYQFI  363 (399)
Q Consensus       332 ~G~~gn~~GD~~qLGGtFVId~g-Gg~I~yah~  363 (399)
                                  -+|.+||||++ | +|++.+.
T Consensus       128 ------------~~Pt~~lid~~~G-~iv~~~~  147 (165)
T 3s9f_A          128 ------------SIPTLIGLNADTG-DTVTTRA  147 (165)
T ss_dssp             ------------SSSEEEEEETTTC-CEEESCH
T ss_pred             ------------CCCEEEEEeCCCC-EEEeccc
Confidence                        15789999997 7 7888654

>1o73_A Tryparedoxin; electron transport, trypanosomatid, thioredoxin; 2.28A {Trypanosoma brucei brucei} SCOP: c.47.1.10

Probab=99.20  E-value=3.5e-11  Score=100.69  Aligned_cols=105  Identities=14%  Similarity=0.077  Sum_probs=77.7

Q ss_pred             CCCceechhhccCCCEEEEeecCCCCcchHHHHHHHHhccchhh-hcCCeEEEEecCChhhHHhhhcCC--CCCceeEe-
Q 015842          217 KTPPMKALELWRESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFD-ALGIQLFAVLHEYIESEVKDFWPR--YWGGVVVY-  292 (399)
Q Consensus       217 ~G~~VsLsdL~~~~pvVLvFyRg~gCP~Cr~el~~L~e~~pef~-alGV~LVaIspE~~e~~ik~F~~~--~l~f~VLs-  292 (399)
                      +| .++++++ +++++||.|+ ..|||.|+.++..|.++..++. +.++++|+|+.+.....++.|.+.  ...++++. 
T Consensus        18 ~g-~~~l~~~-~gk~vll~F~-a~wC~~C~~~~~~l~~l~~~~~~~~~~~vv~i~~d~~~~~~~~~~~~~~~~~~~~~~~   94 (144)
T 1o73_A           18 SG-EVSLGSL-VGKTVFLYFS-ASWCPPCRGFTPVLAEFYEKHHVAKNFEVVLISWDENESDFHDYYGKMPWLALPFDQR   94 (144)
T ss_dssp             TS-CBCSGGG-TTCEEEEEEE-CTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCSSHHHHHHHHTTCSSEECCTTCH
T ss_pred             CC-cCcHHHh-CCCEEEEEEE-CcCCHHHHHHHHHHHHHHHHhccCCCEEEEEEeCCCCHHHHHHHHHhCCceEeeccch
Confidence            48 9999996 6667776666 6899999999999999988887 468999999987654446676642  22344333 


Q ss_pred             ccchHHHHHhCCCcccccccccccccCHHHHHHHHHHHhcCCccccCCCCcccceEEEEe-cCCCcEEEEEe
Q 015842          293 DQGMEFFKALGGGKLLKDKFLSGFLLNPRAIANYKRARTLGVEQNFKGEGEIKGGLFIVG-RGRSGIAYQFI  363 (399)
Q Consensus       293 Dp~r~lYkaLGl~r~~r~s~lsgfl~~P~v~~~~~rA~~~G~~gn~~GD~~qLGGtFVId-~gGg~I~yah~  363 (399)
                      |+...+.++||+.                                      ..|.+|||| ++| +|++.+.
T Consensus        95 ~~~~~~~~~~~v~--------------------------------------~~Pt~~lid~~~G-~i~~~~~  127 (144)
T 1o73_A           95 STVSELGKTFGVE--------------------------------------SIPTLITINADTG-AIIGTQA  127 (144)
T ss_dssp             HHHHHHHHHHTCC--------------------------------------SSSEEEEEETTTC-CEEESCH
T ss_pred             hHHHHHHHHcCCC--------------------------------------CCCEEEEEECCCC-eEEecch
Confidence            5566777776653                                      147899999 786 7887654

>2lus_A Thioredoxion; CR-Trp16, oxidoreductase; NMR {Carcinoscorpius rotundicauda}

Probab=98.83  E-value=1.6e-12  Score=108.25  Aligned_cols=112  Identities=11%  Similarity=-0.032  Sum_probs=80.9

Q ss_pred             CCCceechhhccCC-CEEEEeecCCCCcchHHHHHHHHhccchhhh--cCCeEEEEecCChhhHHhhhcC-CCCC---ce
Q 015842          217 KTPPMKALELWRES-PAVLLCIRRPGCIMCRAEAHQLYAKKPIFDA--LGIQLFAVLHEYIESEVKDFWP-RYWG---GV  289 (399)
Q Consensus       217 ~G~~VsLsdL~~~~-pvVLvFyRg~gCP~Cr~el~~L~e~~pef~a--lGV~LVaIspE~~e~~ik~F~~-~~l~---f~  289 (399)
                      +|++++++++++++ ++||.|+. .|||.|+.++..|.++..++.+  .++.+|+|+.+.....++.|.+ ..++   ++
T Consensus        13 ~g~~~~l~~~~~gk~~vll~F~a-~wC~~C~~~~~~l~~~~~~~~~~~~~~~v~~v~~d~~~~~~~~~~~~~~~~~~~~~   91 (143)
T 2lus_A           13 NRCEVNANEALKDKDIIGFYFSA-HWCPPCRGFTPILADMYSELVDDSAPFEIIFVSSDRSEDDMFQYMMESHGDWLAIP   91 (143)
Confidence            49999999966776 77766664 9999999999999999988853  5899999987644334666664 3333   34


Q ss_pred             eEeccchHHHHHhCCCcccccccccccccCHHHHHHHHHHHhcCCccccCCCCcccceEEEEecCCCcEEEEEecCCCC
Q 015842          290 VVYDQGMEFFKALGGGKLLKDKFLSGFLLNPRAIANYKRARTLGVEQNFKGEGEIKGGLFIVGRGRSGIAYQFIERNFG  368 (399)
Q Consensus       290 VLsDp~r~lYkaLGl~r~~r~s~lsgfl~~P~v~~~~~rA~~~G~~gn~~GD~~qLGGtFVId~gGg~I~yah~d~d~g  368 (399)
                      +..|+...++++||+.                                      ..|.+||||++| +|++.+...+..
T Consensus        92 ~~~~~~~~~~~~~~v~--------------------------------------~~P~~~lid~~G-~i~~~~~~~~~~  131 (143)
T 2lus_A           92 YRSGPASNVTAKYGIT--------------------------------------GIPALVIVKKDG-TLISMNGRGEVQ  131 (143)
Confidence            5566666677666552                                      146799999986 788886555544

>4h86_A Peroxiredoxin type-2; oxidoreductase; 2.00A {Saccharomyces cerevisiae} PDB: 4dsq_A 4dsr_A 4dss_A

Probab=98.69  E-value=8.8e-08  Score=89.06  Aligned_cols=129  Identities=13%  Similarity=0.023  Sum_probs=93.9

Q ss_pred             Cceechhhc-cCCCEEEEeecCCCCcchHH-HHHHHHhccchh-hhcCC-eEEEEecCChhhHHhhhcC-----CCCCce
Q 015842          219 PPMKALELW-RESPAVLLCIRRPGCIMCRA-EAHQLYAKKPIF-DALGI-QLFAVLHEYIESEVKDFWP-----RYWGGV  289 (399)
Q Consensus       219 ~~VsLsdL~-~~~pvVLvFyRg~gCP~Cr~-el~~L~e~~pef-~alGV-~LVaIspE~~e~~ik~F~~-----~~l~f~  289 (399)
                      +++++++++ ++++|||+++.+.+.|-|.. ++-.+.+.++++ ++.|+ .+++|+-.++= ..+.|.+     ....+.
T Consensus        58 ~~v~ls~~~~k~KkVVLf~vPGAFTPtCS~~hlPgf~~~~d~~~k~kGvd~I~ciSVND~F-Vm~AW~k~~~~~~~~~i~  136 (199)
T 4h86_A           58 QTVEWSKLISENKKVIITGAPAAFSPTCTVSHIPGYINYLDELVKEKEVDQVIVVTVDNPF-ANQAWAKSLGVKDTTHIK  136 (199)
T ss_dssp             EEEEHHHHHHHCSEEEEEECSCTTCHHHHHTTHHHHHHHHHHHHHHSCCCEEEEEESSCHH-HHHHHHHHTTCCCCSSEE
T ss_pred             eeeEHHHHhcCCCeEEEEEeCCCcCCcCChhhChHHHHHHHHHHHhcCCcEEEEEEcCCHH-HHHHHHHHhccccccccc
Confidence            478888887 47789999999999999986 688898888765 88998 57778877663 3555653     234678


Q ss_pred             eEeccchHHHHHhCCCcccccccccccccCHHHHHHHHHHHhcCCccccCCCCcccceEEEEecCCCcEEEEEecCCCCC
Q 015842          290 VVYDQGMEFFKALGGGKLLKDKFLSGFLLNPRAIANYKRARTLGVEQNFKGEGEIKGGLFIVGRGRSGIAYQFIERNFGD  369 (399)
Q Consensus       290 VLsDp~r~lYkaLGl~r~~r~s~lsgfl~~P~v~~~~~rA~~~G~~gn~~GD~~qLGGtFVId~gGg~I~yah~d~d~gD  369 (399)
                      +++|++..+.++||+...  .    ++                       |...-..-++||+ +| +|.|.+++.+.++
T Consensus       137 ~laD~~~eftkalGl~~~--~----~~-----------------------gg~RS~Rya~IVd-DG-vV~~~~vE~~pg~  185 (199)
T 4h86_A          137 FASDPGCAFTKSIGFELA--V----GD-----------------------GVYWSGRWAMVVE-NG-IVTYAAKETNPGT  185 (199)
T ss_dssp             EEECGGGHHHHHTTCEEE--E----ET-----------------------TEEEECSEEEEEE-TT-EEEEEEECSSTTT
T ss_pred             ccCCcchHHHHhcCceee--c----CC-----------------------CcceeeEEEEEEE-CC-EEEEEEEeCCCCC
Confidence            999999999999998520  0    00                       0001124689999 65 8999999998765


Q ss_pred             C---CCHHHHHHH
Q 015842          370 W---APLAEVIEI  379 (399)
Q Consensus       370 r---ad~eeVLaA  379 (399)
                      .   -..+.||+.
T Consensus       186 ~~~vS~ae~vL~~  198 (199)
T 4h86_A          186 DVTVSSVESVLAH  198 (199)
T ss_dssp             CCSTTSHHHHHTT
T ss_pred             CCcccCHHHHHhc
Confidence            4   356667654

>2l57_A Uncharacterized protein; structural genomics, unknown function, thioredoxin-like, PSI protein structure initiative; NMR {Clostridium perfringens}

Probab=98.38  E-value=2.6e-06  Score=69.89  Aligned_cols=97  Identities=9%  Similarity=0.104  Sum_probs=68.2

Q ss_pred             ccCCCEEEEeecCCCCcchHHHHHHHHhccchhhhcCCeEEEEecCChhhHHhhhcCCCCCceeEeccchHHHHHhCCCc
Q 015842          227 WRESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLHEYIESEVKDFWPRYWGGVVVYDQGMEFFKALGGGK  306 (399)
Q Consensus       227 ~~~~pvVLvFyRg~gCP~Cr~el~~L~e~~pef~alGV~LVaIspE~~e~~ik~F~~~~l~f~VLsDp~r~lYkaLGl~r  306 (399)
                      .+++++||.|+ ..|||+|+.....|.++..++. .++.++.|..+                   .|.+..+.+.||+. 
T Consensus        24 ~~~k~~lv~f~-a~wC~~C~~~~~~l~~~~~~~~-~~v~~~~v~~~-------------------~d~~~~~~~~~~v~-   81 (126)
T 2l57_A           24 KEGIPTIIMFK-TDTCPYCVEMQKELSYVSKERE-GKFNIYYARLE-------------------EEKNIDLAYKYDAN-   81 (126)
T ss_dssp             CSSSCEEEEEE-CSSCHHHHHHHHHHHHHHHHSS-SSCEEEEEETT-------------------SSHHHHHHHHTTCC-
T ss_pred             hCCCcEEEEEE-CCCCccHHHHHHHHHHHHHHhc-CCeEEEEEeCC-------------------CCchHHHHHHcCCc-
Confidence            34556666655 7899999999999988777765 57888888743                   23344566666653 


Q ss_pred             ccccccccccccCHHHHHHHHHHHhcCCccccCCCCcccceEEEEecCCCcEEEEEecCCCCCCCCHHHHHHHHHhhhhh
Q 015842          307 LLKDKFLSGFLLNPRAIANYKRARTLGVEQNFKGEGEIKGGLFIVGRGRSGIAYQFIERNFGDWAPLAEVIEICTQLQDQ  386 (399)
Q Consensus       307 ~~r~s~lsgfl~~P~v~~~~~rA~~~G~~gn~~GD~~qLGGtFVId~gGg~I~yah~d~d~gDrad~eeVLaAl~~l~~~  386 (399)
                                                           ..|.+++++++| ++++.+.+     ..+.+++.+.++.+...
T Consensus        82 -------------------------------------~~Pt~~~~~~~G-~~~~~~~G-----~~~~~~l~~~l~~~~~~  118 (126)
T 2l57_A           82 -------------------------------------IVPTTVFLDKEG-NKFYVHQG-----LMRKNNIETILNSLGVK  118 (126)
T ss_dssp             -------------------------------------SSSEEEEECTTC-CEEEEEES-----CCCHHHHHHHHHHHCCC
T ss_pred             -------------------------------------ceeEEEEECCCC-CEEEEecC-----CCCHHHHHHHHHHHhcc
Confidence                                                 147899999886 78887764     34678888888876544


Q ss_pred             hc
Q 015842          387 QR  388 (399)
Q Consensus       387 ~~  388 (399)
                      ..
T Consensus       119 ~~  120 (126)
T 2l57_A          119 EG  120 (126)
T ss_dssp             CC
T ss_pred             cc
Confidence            43

>2ju5_A Thioredoxin disulfide isomerase; protein, oxidoreductase; NMR {Chlamydophila pneumoniae}

Probab=98.25  E-value=1.5e-06  Score=74.97  Aligned_cols=112  Identities=9%  Similarity=0.005  Sum_probs=71.5

Q ss_pred             CCceechhhccCCCEEEEeecCCCCcchHHHHHHHHhccchhh---hcCCeEEEEecCChhhHHhhhcCCCCCceeEecc
Q 015842          218 TPPMKALELWRESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFD---ALGIQLFAVLHEYIESEVKDFWPRYWGGVVVYDQ  294 (399)
Q Consensus       218 G~~VsLsdL~~~~pvVLvFyRg~gCP~Cr~el~~L~e~~pef~---alGV~LVaIspE~~e~~ik~F~~~~l~f~VLsDp  294 (399)
                      |+.+.+.+ .+++++||.|+...|||.|+.+...|.+. +++.   ..++.+|.|..+...         .++++ +.|.
T Consensus        37 ~~~~~~a~-~~gk~vlv~F~ga~wC~~C~~~~p~l~~~-~~~~~~~~~~~~~v~vd~~~~~---------~~~~~-~~~~  104 (154)
T 2ju5_A           37 AEALEHSK-QDHKPIGLFFTGSDWCMWCIKMQDQILQS-SEFKHFAGVHLHMVEVDFPQKN---------HQPEE-QRQK  104 (154)
T ss_dssp             HHHHHHHH-HHCCCEEEEEECTTTCHHHHHHHHHTTTS-HHHHHHHHHHCEEEEEECCSSC---------CCCHH-HHHH
T ss_pred             HHHHHHHH-hCCCeEEEEEeCCCCCHhHHHHHHHHhcC-HHHHHHhcCcEEEEEecCcccc---------CCChh-hHhh
Confidence            45556665 36778888888889999999999988431 2222   234555555533211         23333 2445


Q ss_pred             chHHHHHhCCCcccccccccccccCHHHHHHHHHHHhcCCccccCCCCcccceEEEEecCCCcEEEEEecCCCCCCCCHH
Q 015842          295 GMEFFKALGGGKLLKDKFLSGFLLNPRAIANYKRARTLGVEQNFKGEGEIKGGLFIVGRGRSGIAYQFIERNFGDWAPLA  374 (399)
Q Consensus       295 ~r~lYkaLGl~r~~r~s~lsgfl~~P~v~~~~~rA~~~G~~gn~~GD~~qLGGtFVId~gGg~I~yah~d~d~gDrad~e  374 (399)
                      ...+.+.||+.                                      ..|.++|+|++| ++++.+ +..   ..+.+
T Consensus       105 ~~~l~~~~~v~--------------------------------------~~Pt~~~~d~~G-~~~~~~-G~~---~~~~~  141 (154)
T 2ju5_A          105 NQELKAQYKVT--------------------------------------GFPELVFIDAEG-KQLARM-GFE---PGGGA  141 (154)
T ss_dssp             HHHHHHHTTCC--------------------------------------SSSEEEEECTTC-CEEEEE-CCC---TTCHH
T ss_pred             HHHHHHHcCCC--------------------------------------CCCEEEEEcCCC-CEEEEe-cCC---CCCHH
Confidence            55555555442                                      158999999996 788877 432   34788


Q ss_pred             HHHHHHHhhh
Q 015842          375 EVIEICTQLQ  384 (399)
Q Consensus       375 eVLaAl~~l~  384 (399)
                      ++++.++.+.
T Consensus       142 ~l~~~l~~~l  151 (154)
T 2ju5_A          142 AYVSKVKSAL  151 (154)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            8888888764

>2fwh_A Thiol:disulfide interchange protein DSBD; thioredoxin-like, C-terminal domain, reduced form at PH7, oxidoreductase; 0.99A {Escherichia coli} SCOP: c.47.1.1 PDB: 2fwe_A 2fwf_A 2fwg_A 1vrs_D 1uc7_A

Probab=98.11  E-value=2.2e-06  Score=71.86  Aligned_cols=103  Identities=10%  Similarity=0.026  Sum_probs=64.0

Q ss_pred             ceechhhccCCCEEEEeecCCCCcchHHHHHHH---HhccchhhhcCCeEEEEecCChhhHHhhhcCCCCCceeEeccch
Q 015842          220 PMKALELWRESPAVLLCIRRPGCIMCRAEAHQL---YAKKPIFDALGIQLFAVLHEYIESEVKDFWPRYWGGVVVYDQGM  296 (399)
Q Consensus       220 ~VsLsdL~~~~pvVLvFyRg~gCP~Cr~el~~L---~e~~pef~alGV~LVaIspE~~e~~ik~F~~~~l~f~VLsDp~r  296 (399)
                      ...++++ +++++||.|+ ..||+.|+.....+   .++..++.  ++.++.|..+..                 .|...
T Consensus        23 ~~~l~~~-~~k~vlv~F~-a~wC~~C~~~~~~~~~~~~l~~~~~--~~~~~~vd~~~~-----------------~~~~~   81 (134)
T 2fwh_A           23 NQALVEA-KGKPVMLDLY-ADWCVACKEFEKYTFSDPQVQKALA--DTVLLQANVTAN-----------------DAQDV   81 (134)
T ss_dssp             HHHHHHH-TTSCEEEEEE-CTTCHHHHHHHHHTTTSHHHHHHTT--TSEEEEEECTTC-----------------CHHHH
T ss_pred             HHHHHHh-cCCcEEEEEE-CCCCHHHHHHHHHhcCCHHHHHHhc--CcEEEEEeCCCC-----------------cchHH
Confidence            3445553 4678888877 69999999987655   44444443  577777765421                 13445


Q ss_pred             HHHHHhCCCcccccccccccccCHHHHHHHHHHHhcCCccccCCCCcccceEEEEecCCCcEE--EEEecCCCCCCCCHH
Q 015842          297 EFFKALGGGKLLKDKFLSGFLLNPRAIANYKRARTLGVEQNFKGEGEIKGGLFIVGRGRSGIA--YQFIERNFGDWAPLA  374 (399)
Q Consensus       297 ~lYkaLGl~r~~r~s~lsgfl~~P~v~~~~~rA~~~G~~gn~~GD~~qLGGtFVId~gGg~I~--yah~d~d~gDrad~e  374 (399)
                      .+.+.||+.                                      ..|.++++|++| +++  +.+     ....+.+
T Consensus        82 ~l~~~~~v~--------------------------------------~~Pt~~~~d~~G-~~v~~~~~-----~G~~~~~  117 (134)
T 2fwh_A           82 ALLKHLNVL--------------------------------------GLPTILFFDGQG-QEHPQARV-----TGFMDAE  117 (134)
T ss_dssp             HHHHHTTCC--------------------------------------SSSEEEEECTTS-CBCGGGCB-----CSCCCHH
T ss_pred             HHHHHcCCC--------------------------------------CCCEEEEECCCC-CEeeeeee-----eeccCHH
Confidence            556655552                                      147899999986 564  333     3345788


Q ss_pred             HHHHHHHhhhhhh
Q 015842          375 EVIEICTQLQDQQ  387 (399)
Q Consensus       375 eVLaAl~~l~~~~  387 (399)
                      ++.+.++.+++.+
T Consensus       118 ~l~~~l~~~~~~~  130 (134)
T 2fwh_A          118 TFSAHLRDRQPHH  130 (134)
T ss_dssp             HHHHHHHHC----
T ss_pred             HHHHHHHhcCccc
Confidence            9999988887654

>2pu9_C TRX-F, thioredoxin F-type, chloroplast; protein-protein complex, iron-sulfur, electron transport; 1.65A {Spinacia oleracea} PDB: 2pvo_C 1f9m_A

Probab=97.89  E-value=0.00014  Score=57.94  Aligned_cols=86  Identities=13%  Similarity=0.127  Sum_probs=58.2

Q ss_pred             CCCEEEEeecCCCCcchHHHHHHHHhccchhhhcCCeEEEEecCChhhHHhhhcCCCCCceeEeccchHHHHHhCCCccc
Q 015842          229 ESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLHEYIESEVKDFWPRYWGGVVVYDQGMEFFKALGGGKLL  308 (399)
Q Consensus       229 ~~pvVLvFyRg~gCP~Cr~el~~L~e~~pef~alGV~LVaIspE~~e~~ik~F~~~~l~f~VLsDp~r~lYkaLGl~r~~  308 (399)
                      ++++||.|+. .|||.|+.....|.++..++.  ++.++.|-.+.                    ....+.+.||+.   
T Consensus        24 ~~~vlv~f~a-~wC~~C~~~~~~l~~~~~~~~--~v~~~~vd~~~--------------------~~~~~~~~~~v~---   77 (111)
T 2pu9_C           24 DKPVVLDMFT-QWCGPSKAMAPKYEKLAEEYL--DVIFLKLDCNQ--------------------ENKTLAKELGIR---   77 (111)
T ss_dssp             TSCEEEEEEC-TTCHHHHHHHHHHHHHHHHCT--TSEEEEEECSS--------------------TTHHHHHHHCCS---
T ss_pred             CCEEEEEEEC-CcCHhHHHHCHHHHHHHHHCC--CeEEEEEecCc--------------------chHHHHHHcCCC---
Confidence            5677777765 999999999999888766654  57777776431                    234566666653   


Q ss_pred             ccccccccccCHHHHHHHHHHHhcCCccccCCCCcccceEEEEecCCCcEEEEEecCCCCCCCCHHHHHHHHHhh
Q 015842          309 KDKFLSGFLLNPRAIANYKRARTLGVEQNFKGEGEIKGGLFIVGRGRSGIAYQFIERNFGDWAPLAEVIEICTQL  383 (399)
Q Consensus       309 r~s~lsgfl~~P~v~~~~~rA~~~G~~gn~~GD~~qLGGtFVId~gGg~I~yah~d~d~gDrad~eeVLaAl~~l  383 (399)
                                                         ..|. |++.++| ++.+.+.+.+      .+++.+.++.+
T Consensus        78 -----------------------------------~~Pt-~~~~~~G-~~~~~~~G~~------~~~l~~~l~~~  109 (111)
T 2pu9_C           78 -----------------------------------VVPT-FKILKEN-SVVGEVTGAK------YDKLLEAIQAA  109 (111)
T ss_dssp             -----------------------------------BSSE-EEEESSS-SEEEEEESSC------HHHHHHHHHHH
T ss_pred             -----------------------------------eeeE-EEEEeCC-cEEEEEcCCC------HHHHHHHHHHh
Confidence                                               1354 7788886 7877776542      56777777665

>2kuc_A Putative disulphide-isomerase; structural genomics, thioredo PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron}

Probab=97.89  E-value=4.7e-05  Score=62.30  Aligned_cols=94  Identities=13%  Similarity=0.219  Sum_probs=58.1

Q ss_pred             cCCCEEEEeecCCCCcchHHHHHHHHh---ccchhhhcCCeEEEEecCChhhHHhhhcCCCCCceeEeccchHHHHHhCC
Q 015842          228 RESPAVLLCIRRPGCIMCRAEAHQLYA---KKPIFDALGIQLFAVLHEYIESEVKDFWPRYWGGVVVYDQGMEFFKALGG  304 (399)
Q Consensus       228 ~~~pvVLvFyRg~gCP~Cr~el~~L~e---~~pef~alGV~LVaIspE~~e~~ik~F~~~~l~f~VLsDp~r~lYkaLGl  304 (399)
                      +++++||.|+ ..|||.|+.....+.+   ....+ ..++.++.|-.+.                   |....+.+.||+
T Consensus        26 ~~k~vlv~f~-a~wC~~C~~~~~~~~~~~~~~~~~-~~~~~~~~vd~~~-------------------~~~~~~~~~~~v   84 (130)
T 2kuc_A           26 EDKLLFVDCF-TTWCGPCKRLSKVVFKDSLVADYF-NRHFVNLKMDMEK-------------------GEGVELRKKYGV   84 (130)
T ss_dssp             HSSCEEEEEC-CTTCTHHHHHHHHGGGCHHHHHHH-HHHSEEEEECSSS-------------------TTHHHHHHHTTC
T ss_pred             cCCeEEEEEE-CCCCccHHHHHHHhcCcHHHHHHH-hcCeEEEEEecCC-------------------cchHHHHHHcCC
Confidence            5667777666 7999999998887732   11111 1123333332221                   244556666655


Q ss_pred             CcccccccccccccCHHHHHHHHHHHhcCCccccCCCCcccceEEEEecCCCcEEEEEecCCCCCCCCHHHHHHHHHhhh
Q 015842          305 GKLLKDKFLSGFLLNPRAIANYKRARTLGVEQNFKGEGEIKGGLFIVGRGRSGIAYQFIERNFGDWAPLAEVIEICTQLQ  384 (399)
Q Consensus       305 ~r~~r~s~lsgfl~~P~v~~~~~rA~~~G~~gn~~GD~~qLGGtFVId~gGg~I~yah~d~d~gDrad~eeVLaAl~~l~  384 (399)
                      .                                      ..|.++++|++| ++.+.+.+.     .+.+++.+.++.+.
T Consensus        85 ~--------------------------------------~~Pt~~~~d~~G-~~~~~~~G~-----~~~~~l~~~l~~~~  120 (130)
T 2kuc_A           85 H--------------------------------------AYPTLLFINSSG-EVVYRLVGA-----EDAPELLKKVKLGV  120 (130)
T ss_dssp             C--------------------------------------SSCEEEEECTTS-CEEEEEESC-----CCHHHHHHHHHHHH
T ss_pred             C--------------------------------------CCCEEEEECCCC-cEEEEecCC-----CCHHHHHHHHHHHH
Confidence            3                                      147899999986 788877653     36788888888765


Q ss_pred             hh
Q 015842          385 DQ  386 (399)
Q Consensus       385 ~~  386 (399)
                      ..
T Consensus       121 ~~  122 (130)
T 2kuc_A          121 ES  122 (130)
T ss_dssp             SC
T ss_pred             Hh
Confidence            43

>3fk8_A Disulphide isomerase; APC61824.1, xylella fastidiosa temecul structural genomics, PSI-2, protein structure initiative; 1.30A {Xylella fastidiosa}

Probab=97.88  E-value=4.6e-05  Score=62.90  Aligned_cols=101  Identities=13%  Similarity=0.251  Sum_probs=69.2

Q ss_pred             cCCCEEEEeecCCCCcchHHHHHHHH--hccchhhhcCCeEEEEecCChhhHHhhhcCCCCCceeEeccchHHHHHhCCC
Q 015842          228 RESPAVLLCIRRPGCIMCRAEAHQLY--AKKPIFDALGIQLFAVLHEYIESEVKDFWPRYWGGVVVYDQGMEFFKALGGG  305 (399)
Q Consensus       228 ~~~pvVLvFyRg~gCP~Cr~el~~L~--e~~pef~alGV~LVaIspE~~e~~ik~F~~~~l~f~VLsDp~r~lYkaLGl~  305 (399)
                      .++++||. |-..||+.|+.....|.  +...++.. ++.++.|..+.                  .|....+.+.||+.
T Consensus        28 ~~k~vlv~-f~a~wC~~C~~~~~~l~~~~~~~~~~~-~~~~~~vd~~~------------------~~~~~~l~~~~~v~   87 (133)
T 3fk8_A           28 THKPTLLV-FGANWCTDCRALDKSLRNQKNTALIAK-HFEVVKIDVGN------------------FDRNLELSQAYGDP   87 (133)
T ss_dssp             HTCCEEEE-EECTTCHHHHHHHHHHTSHHHHHHHHH-HCEEEEEECTT------------------TTSSHHHHHHTTCG
T ss_pred             cCCcEEEE-EcCCCCHHHHHHHHHhCCHHHHHHhcC-CEEEEEEeCCc------------------ccchHHHHHHhCCc
Confidence            35565554 55889999999999888  66666644 57888776532                  24566677777763


Q ss_pred             cccccccccccccCHHHHHHHHHHHhcCCccccCCCCcccceEEEEecCCCcEEEEEecCCCCC--CCCHHHHHHHHHhh
Q 015842          306 KLLKDKFLSGFLLNPRAIANYKRARTLGVEQNFKGEGEIKGGLFIVGRGRSGIAYQFIERNFGD--WAPLAEVIEICTQL  383 (399)
Q Consensus       306 r~~r~s~lsgfl~~P~v~~~~~rA~~~G~~gn~~GD~~qLGGtFVId~gGg~I~yah~d~d~gD--rad~eeVLaAl~~l  383 (399)
                      .             +                      ...|.++++|++| ++++.+.......  ..+.+++.+.++.+
T Consensus        88 ~-------------~----------------------~~~Pt~~~~d~~G-~~~~~~~g~~~~~~~~~~~~~l~~~l~~l  131 (133)
T 3fk8_A           88 I-------------Q----------------------DGIPAVVVVNSDG-KVRYTTKGGELANARKMSDQGIYDFFAKI  131 (133)
T ss_dssp             G-------------G----------------------GCSSEEEEECTTS-CEEEECCSCTTTTGGGSCHHHHHHHHHHH
T ss_pred             c-------------C----------------------CccceEEEECCCC-CEEEEecCCcccccccCCHHHHHHHHHHh
Confidence            0             0                      1258899999996 8998887744432  35677777777765


Q ss_pred             h
Q 015842          384 Q  384 (399)
Q Consensus       384 ~  384 (399)
                      .
T Consensus       132 ~  132 (133)
T 3fk8_A          132 T  132 (133)
T ss_dssp             H
T ss_pred             c
Confidence            3

>1faa_A Thioredoxin F; electron transport; 1.85A {Spinacia oleracea} SCOP: c.47.1.1

Probab=97.80  E-value=0.0002  Score=58.12  Aligned_cols=41  Identities=17%  Similarity=0.199  Sum_probs=31.4

Q ss_pred             cCCCEEEEeecCCCCcchHHHHHHHHhccchhhhcCCeEEEEec
Q 015842          228 RESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLH  271 (399)
Q Consensus       228 ~~~pvVLvFyRg~gCP~Cr~el~~L~e~~pef~alGV~LVaIsp  271 (399)
                      +++++||.|+ ..|||.|+.....|.+...++.  ++.++.|-.
T Consensus        36 ~~~~~vv~f~-a~wC~~C~~~~~~l~~~~~~~~--~~~~~~vd~   76 (124)
T 1faa_A           36 GDKPVVLDMF-TQWCGPCKAMAPKYEKLAEEYL--DVIFLKLDC   76 (124)
T ss_dssp             TTSCEEEEEE-CTTCHHHHHHHHHHHHHHHHCT--TSEEEEEEC
T ss_pred             CCCEEEEEEE-CCcCHhHHHHhHHHHHHHHHCC--CCEEEEEec
Confidence            4567777777 7999999999999887766654  577776654

>2e0q_A Thioredoxin; electron transport; 1.49A {Sulfolobus tokodaii} PDB: 3hhv_A

Probab=97.78  E-value=0.00015  Score=55.83  Aligned_cols=46  Identities=7%  Similarity=-0.009  Sum_probs=31.6

Q ss_pred             hhhccCCCEEEEeecCCCCcchHHHHHHHHhccchhhhcCCeEEEEec
Q 015842          224 LELWRESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLH  271 (399)
Q Consensus       224 sdL~~~~pvVLvFyRg~gCP~Cr~el~~L~e~~pef~alGV~LVaIsp  271 (399)
                      .++.++++.+|++|...|||.|+.....|.+...++..  +.++.|..
T Consensus        10 ~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~--~~~~~v~~   55 (104)
T 2e0q_A           10 DSFLASHEIAVVDFWAEWCAPCLILAPIIEELAEDYPQ--VGFGKLNS   55 (104)
T ss_dssp             HHHHHHSSEEEEEEECTTCHHHHHHHHHHHHHHHHCTT--SEEEEEET
T ss_pred             HHHHhcCCcEEEEEECCCChhHHHHhHHHHHHHHHcCC--ceEEEEEC
Confidence            33334444445555589999999999988887666644  77777764

>3hxs_A Thioredoxin, TRXP; electron transport; 2.00A {Bacteroides fragilis} PDB: 3hyp_A

Probab=97.67  E-value=0.0001  Score=61.19  Aligned_cols=81  Identities=15%  Similarity=0.067  Sum_probs=59.7

Q ss_pred             ccCCCceechhhccCCCEEEEeecCCCCcchHHHHHHHHhccchhhhcCCeEEEEecCChhhHHhhhcCCCCCceeEecc
Q 015842          215 KTKTPPMKALELWRESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLHEYIESEVKDFWPRYWGGVVVYDQ  294 (399)
Q Consensus       215 ~~~G~~VsLsdL~~~~pvVLvFyRg~gCP~Cr~el~~L~e~~pef~alGV~LVaIspE~~e~~ik~F~~~~l~f~VLsDp  294 (399)
                      +.+|..+.++++ +++++||.|| ..|||+|+.....|.++..++.. .+.++.|..+......+.|.-..+|.-++.|+
T Consensus        38 ~~~~~~~~l~~~-~~k~vlv~f~-a~wC~~C~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~  114 (141)
T 3hxs_A           38 DYENHSKEWKYL-GDKPAIVDFY-ADWCGPCKMVAPILEELSKEYAG-KIYIYKVNVDKEPELARDFGIQSIPTIWFVPM  114 (141)
T ss_dssp             CCSSCCCCCCCC-CSSCEEEEEE-CTTCTTHHHHHHHHHHHHHHTTT-TCEEEEEETTTCHHHHHHTTCCSSSEEEEECS
T ss_pred             ccccchhHHHHh-CCCEEEEEEE-CCCCHHHHHHHHHHHHHHHHhcC-ceEEEEEECCCCHHHHHHcCCCCcCEEEEEeC
Confidence            345777777764 6678887777 58999999999999888777764 58888888766554455554467777788888


Q ss_pred             chHH
Q 015842          295 GMEF  298 (399)
Q Consensus       295 ~r~l  298 (399)
                      +..+
T Consensus       115 ~g~~  118 (141)
T 3hxs_A          115 KGEP  118 (141)
T ss_dssp             SSCC
T ss_pred             CCCE
Confidence            7654

>1thx_A Thioredoxin, thioredoxin 2; oxido-reductase, electron transport; 1.60A {Nostoc SP} SCOP: c.47.1.1

Probab=97.67  E-value=0.00043  Score=54.68  Aligned_cols=88  Identities=10%  Similarity=0.074  Sum_probs=58.2

Q ss_pred             CCCEEEEeecCCCCcchHHHHHHHHhccchhhhcCCeEEEEecCChhhHHhhhcCCCCCceeEeccchHHHHHhCCCccc
Q 015842          229 ESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLHEYIESEVKDFWPRYWGGVVVYDQGMEFFKALGGGKLL  308 (399)
Q Consensus       229 ~~pvVLvFyRg~gCP~Cr~el~~L~e~~pef~alGV~LVaIspE~~e~~ik~F~~~~l~f~VLsDp~r~lYkaLGl~r~~  308 (399)
                      ++++||.|+ ..|||.|+.....|.++..++.. .+.++.|..+.                     +..+.+.||+.   
T Consensus        25 ~~~~lv~f~-~~~C~~C~~~~~~l~~~~~~~~~-~v~~~~v~~~~---------------------~~~~~~~~~v~---   78 (115)
T 1thx_A           25 EQPVLVYFW-ASWCGPCQLMSPLINLAANTYSD-RLKVVKLEIDP---------------------NPTTVKKYKVE---   78 (115)
T ss_dssp             SSCEEEEEE-CTTCTTHHHHHHHHHHHHHHTTT-TCEEEEEESTT---------------------CHHHHHHTTCC---
T ss_pred             CceEEEEEE-CCCCHHHHHhHHHHHHHHHHhCC-cEEEEEEEcCC---------------------CHHHHHHcCCC---
Confidence            445555555 68999999999999887766654 37777776432                     23455655553   


Q ss_pred             ccccccccccCHHHHHHHHHHHhcCCccccCCCCcccceEEEEecCCCcEEEEEecCCCCCCCCHHHHHHHHHhhh
Q 015842          309 KDKFLSGFLLNPRAIANYKRARTLGVEQNFKGEGEIKGGLFIVGRGRSGIAYQFIERNFGDWAPLAEVIEICTQLQ  384 (399)
Q Consensus       309 r~s~lsgfl~~P~v~~~~~rA~~~G~~gn~~GD~~qLGGtFVId~gGg~I~yah~d~d~gDrad~eeVLaAl~~l~  384 (399)
                                                         ..|..+++ ++| ++.+.+.+.     .+.+++.+.++.+.
T Consensus        79 -----------------------------------~~Pt~~~~-~~G-~~~~~~~g~-----~~~~~l~~~l~~~l  112 (115)
T 1thx_A           79 -----------------------------------GVPALRLV-KGE-QILDSTEGV-----ISKDKLLSFLDTHL  112 (115)
T ss_dssp             -----------------------------------SSSEEEEE-ETT-EEEEEEESC-----CCHHHHHHHHHHHH
T ss_pred             -----------------------------------ceeEEEEE-cCC-EEEEEecCC-----CCHHHHHHHHHHHh
Confidence                                               14678888 665 777766543     45678877777654

>2voc_A Thioredoxin; electron transport, homodimer, disulfide, transport, redox-active center; 1.50A {Bacillus subtilis} PDB: 2ipa_A 2gzy_A 2gzz_A

Probab=97.63  E-value=0.00022  Score=57.23  Aligned_cols=94  Identities=11%  Similarity=0.004  Sum_probs=61.9

Q ss_pred             hhhccCCCEEEEeecCCCCcchHHHHHHHHhccchhhhcCCeEEEEecCChhhHHhhhcCCCCCceeEeccchHHHHHhC
Q 015842          224 LELWRESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLHEYIESEVKDFWPRYWGGVVVYDQGMEFFKALG  303 (399)
Q Consensus       224 sdL~~~~pvVLvFyRg~gCP~Cr~el~~L~e~~pef~alGV~LVaIspE~~e~~ik~F~~~~l~f~VLsDp~r~lYkaLG  303 (399)
                      .+..+++++||.|+ ..|||.|+.....|.++..++.. ++.++.|..+.                     +..+.+.||
T Consensus        12 ~~~~~~~~~lv~f~-a~wC~~C~~~~~~l~~~~~~~~~-~v~~~~vd~~~---------------------~~~l~~~~~   68 (112)
T 2voc_A           12 SAETSEGVVLADFW-APWCGPSKMIAPVLEELDQEMGD-KLKIVKIDVDE---------------------NQETAGKYG   68 (112)
T ss_dssp             HHHHSSSEEEEEEE-CTTBGGGGGHHHHHHHHHHHHTT-TCEEEEEETTT---------------------CCSHHHHTT
T ss_pred             HHHhCCCEEEEEEE-CCCCHHHHHHHHHHHHHHHHhCC-CcEEEEEECCC---------------------CHHHHHHcC
Confidence            33335556666655 59999999999999887777754 57887776432                     233555555


Q ss_pred             CCcccccccccccccCHHHHHHHHHHHhcCCccccCCCCcccceEEEEecCCCcEEEEEecCCCCCCCCHHHHHHHHHhh
Q 015842          304 GGKLLKDKFLSGFLLNPRAIANYKRARTLGVEQNFKGEGEIKGGLFIVGRGRSGIAYQFIERNFGDWAPLAEVIEICTQL  383 (399)
Q Consensus       304 l~r~~r~s~lsgfl~~P~v~~~~~rA~~~G~~gn~~GD~~qLGGtFVId~gGg~I~yah~d~d~gDrad~eeVLaAl~~l  383 (399)
                      +.                                      ..|..+++ ++| ++.+.+.+.     .+.+++.+.++..
T Consensus        69 v~--------------------------------------~~Pt~~~~-~~G-~~~~~~~G~-----~~~~~l~~~l~~~  103 (112)
T 2voc_A           69 VM--------------------------------------SIPTLLVL-KDG-EVVETSVGF-----KPKEALQELVNKH  103 (112)
T ss_dssp             CC--------------------------------------SBSEEEEE-ETT-EEEEEEESC-----CCHHHHHHHHHTT
T ss_pred             CC--------------------------------------cccEEEEE-eCC-EEEEEEeCC-----CCHHHHHHHHHHH
Confidence            52                                      14778888 675 787776643     4567777777665


Q ss_pred             hh
Q 015842          384 QD  385 (399)
Q Consensus       384 ~~  385 (399)
                      ..
T Consensus       104 ~~  105 (112)
T 2voc_A          104 LL  105 (112)
T ss_dssp             SC
T ss_pred             HH
Confidence            43

>2vlu_A Thioredoxin, thioredoxin H isoform 2.; oxidoreductase, thioredoxin-fold, protein disulfide reductase; 1.70A {Hordeum vulgare var} PDB: 2vlt_A 2vlv_A 2iwt_A*

Probab=97.63  E-value=0.00046  Score=55.69  Aligned_cols=40  Identities=18%  Similarity=0.112  Sum_probs=30.1

Q ss_pred             CCCEEEEeecCCCCcchHHHHHHHHhccchhhhcCCeEEEEec
Q 015842          229 ESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLH  271 (399)
Q Consensus       229 ~~pvVLvFyRg~gCP~Cr~el~~L~e~~pef~alGV~LVaIsp  271 (399)
                      ++++||.|+ ..|||.|+.....|.++..++.  ++.++.|..
T Consensus        34 ~~~~vv~f~-~~~C~~C~~~~~~l~~~~~~~~--~~~~~~vd~   73 (122)
T 2vlu_A           34 KKLVVIDFT-ASWCGPCRIMAPVFADLAKKFP--NAVFLKVDV   73 (122)
T ss_dssp             TCCEEEEEE-CTTCHHHHHHHHHHHHHHHHCT--TSEEEEEET
T ss_pred             CCEEEEEEE-CCCCHHHHHHHHHHHHHHHHCC--CcEEEEEEC
Confidence            567777776 7899999999998887766654  377776654

>3emx_A Thioredoxin; structural genomics, oxidoreductase, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.25A {Aeropyrum pernix}

Probab=97.54  E-value=0.0002  Score=59.91  Aligned_cols=103  Identities=12%  Similarity=0.130  Sum_probs=62.4

Q ss_pred             hhhccCCCEEEEeecCCCCcchHHHHHHHHhccchhhhcCCeEEEEecCChhhHHhhhcCCCCCceeEeccchHHHHHhC
Q 015842          224 LELWRESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLHEYIESEVKDFWPRYWGGVVVYDQGMEFFKALG  303 (399)
Q Consensus       224 sdL~~~~pvVLvFyRg~gCP~Cr~el~~L~e~~pef~alGV~LVaIspE~~e~~ik~F~~~~l~f~VLsDp~r~lYkaLG  303 (399)
                      .+.+++ ++||.|+ ..||+.|+.....|.++..++.   +.++.|..+....            ....|....+.+.||
T Consensus        27 ~~~~~~-~vlv~F~-a~wC~~C~~~~p~l~~l~~~~~---v~~~~vd~~~~~~------------~~~~d~~~~l~~~~~   89 (135)
T 3emx_A           27 RQLLQG-DAILAVY-SKTCPHCHRDWPQLIQASKEVD---VPIVMFIWGSLIG------------ERELSAARLEMNKAG   89 (135)
T ss_dssp             HHHHTS-SEEEEEE-ETTCHHHHHHHHHHHHHHTTCC---SCEEEEEECTTCC------------HHHHHHHHHHHHHHT
T ss_pred             HHHhCC-cEEEEEE-CCcCHhhhHhChhHHHHHHHCC---CEEEEEECCCchh------------hhhhhhhHHHHHHcC
Confidence            344555 7666665 7899999999998888776653   7888887544321            011233344555554


Q ss_pred             CCcccccccccccccCHHHHHHHHHHHhcCCccccCCCCcccceEEEEecCCCcEEEEEecCCCCCCCCHHHHHHHHHhh
Q 015842          304 GGKLLKDKFLSGFLLNPRAIANYKRARTLGVEQNFKGEGEIKGGLFIVGRGRSGIAYQFIERNFGDWAPLAEVIEICTQL  383 (399)
Q Consensus       304 l~r~~r~s~lsgfl~~P~v~~~~~rA~~~G~~gn~~GD~~qLGGtFVId~gGg~I~yah~d~d~gDrad~eeVLaAl~~l  383 (399)
                      +.                                      ..| +|++..+| +++..+.+.     .+.+.+.+.++.+
T Consensus        90 v~--------------------------------------~~P-t~~~~~~G-~~v~~~~G~-----~~~~~~~~~i~~~  124 (135)
T 3emx_A           90 VE--------------------------------------GTP-TLVFYKEG-RIVDKLVGA-----TPWSLKVEKAREI  124 (135)
T ss_dssp             CC--------------------------------------SSS-EEEEEETT-EEEEEEESC-----CCHHHHHHHHHHH
T ss_pred             Cc--------------------------------------eeC-eEEEEcCC-EEEEEEeCC-----CCHHHHHHHHHHH
Confidence            42                                      147 56665575 788877764     4566666777776


Q ss_pred             hhhhc
Q 015842          384 QDQQR  388 (399)
Q Consensus       384 ~~~~~  388 (399)
                      .+.+.
T Consensus       125 ~~~~~  129 (135)
T 3emx_A          125 YGGEG  129 (135)
T ss_dssp             C----
T ss_pred             hCCCc
Confidence            65543

>3d22_A TRXH4, thioredoxin H-type; electron transport, cytoplasm, redox-active center, transport, oxidoreductase; 1.60A {Populus trichocarpa x populusdeltoides} PDB: 3d21_A

Probab=97.47  E-value=0.001  Score=55.12  Aligned_cols=41  Identities=7%  Similarity=-0.047  Sum_probs=31.9

Q ss_pred             cCCCEEEEeecCCCCcchHHHHHHHHhccchhhhcCCeEEEEec
Q 015842          228 RESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLH  271 (399)
Q Consensus       228 ~~~pvVLvFyRg~gCP~Cr~el~~L~e~~pef~alGV~LVaIsp  271 (399)
                      +++++||.|+. .||+.|+.....|.++..++.  ++.++.|..
T Consensus        45 ~~k~vvv~f~a-~wC~~C~~~~~~l~~l~~~~~--~v~~~~v~~   85 (139)
T 3d22_A           45 DGKIVLANFSA-RWCGPSRQIAPYYIELSENYP--SLMFLVIDV   85 (139)
T ss_dssp             HTCCEEEEEEC-TTCHHHHHHHHHHHHHHHHCT--TSEEEEEET
T ss_pred             cCCEEEEEEEC-CCCHHHHHHHHHHHHHHHHCC--CCEEEEEeC
Confidence            46677777765 899999999999988776662  678877764

>1w4v_A Thioredoxin, mitochondrial; antioxidant enzyme, mitochondrion, electron TRA oxidoreductase; 1.80A {Homo sapiens} PDB: 1uvz_A 1w89_A

Probab=97.46  E-value=0.001  Score=54.03  Aligned_cols=41  Identities=17%  Similarity=0.119  Sum_probs=30.1

Q ss_pred             CCCEEEEeecCCCCcchHHHHHHHHhccchhhhcCCeEEEEec
Q 015842          229 ESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLH  271 (399)
Q Consensus       229 ~~pvVLvFyRg~gCP~Cr~el~~L~e~~pef~alGV~LVaIsp  271 (399)
                      ++++||.|+ ..|||.|+.....|.+...++.. ++.++.|..
T Consensus        31 ~k~vlv~f~-a~~C~~C~~~~~~l~~~~~~~~~-~v~~~~vd~   71 (119)
T 1w4v_A           31 ETPVVVDFH-AQWCGPCKILGPRLEKMVAKQHG-KVVMAKVDI   71 (119)
T ss_dssp             SSCEEEEEE-CTTCHHHHHHHHHHHHHHHHTTT-SSEEEEEET
T ss_pred             CCcEEEEEE-CCCCHHHHHHHHHHHHHHHHhcC-CeEEEEEeC
Confidence            456666666 89999999999998887666643 467766653

>2f51_A Thioredoxin; electron transport; 1.90A {Trichomonas vaginalis}

Probab=97.44  E-value=3.9e-05  Score=62.87  Aligned_cols=76  Identities=9%  Similarity=0.012  Sum_probs=52.6

Q ss_pred             CCCceechh-hccCCCEEEEeecCCCCcchHHHHHHHHhccchhhhcCCeEEEEecCChhhHHhhhcCCCCCceeEecc
Q 015842          217 KTPPMKALE-LWRESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLHEYIESEVKDFWPRYWGGVVVYDQ  294 (399)
Q Consensus       217 ~G~~VsLsd-L~~~~pvVLvFyRg~gCP~Cr~el~~L~e~~pef~alGV~LVaIspE~~e~~ik~F~~~~l~f~VLsDp  294 (399)
                      +|....+.+ +.+.++.+|++|-..||+.|+.....|.++..++  .++.++.|-.+......+.|.-..+|.-++.|.
T Consensus         9 ~g~~~~~~~~~~~~~~~vlv~f~a~wC~~C~~~~~~l~~l~~~~--~~v~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~   85 (118)
T 2f51_A            9 NGTHEALLNRIKEAPGLVLVDFFATWCGPCQRLGQILPSIAEAN--KDVTFIKVDVDKNGNAADAYGVSSIPALFFVKK   85 (118)
T ss_dssp             CSCHHHHHHHHHHCSSCEEEEEECTTCHHHHHHHHHHHHHHHHC--TTSEEEEEETTTCHHHHHHTTCCSSSEEEEEEE
T ss_pred             cCCHHHHHHHHHhCCCEEEEEEECCCCHHHHHHHHHHHHHHHHC--CCeEEEEEECCCCHHHHHhcCCCCCCEEEEEeC
Confidence            466666763 4443444444555799999999999998877766  579999998776544345555456777677776

>3die_A Thioredoxin, TRX; electron transport, SWAP domain, redox enzymology, oxidoreductase, redox-active center, transport; 1.85A {Staphylococcus aureus} SCOP: c.47.1.1 PDB: 2o7k_A 2o85_A 2o89_A 2o87_A

Probab=97.40  E-value=0.00025  Score=55.32  Aligned_cols=73  Identities=10%  Similarity=0.068  Sum_probs=49.3

Q ss_pred             hhhccCCCEEEEeecCCCCcchHHHHHHHHhccchhhhcCCeEEEEecCChhhHHhhhcCCCCCceeEeccchHH
Q 015842          224 LELWRESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLHEYIESEVKDFWPRYWGGVVVYDQGMEF  298 (399)
Q Consensus       224 sdL~~~~pvVLvFyRg~gCP~Cr~el~~L~e~~pef~alGV~LVaIspE~~e~~ik~F~~~~l~f~VLsDp~r~l  298 (399)
                      .+..+++++||.|+ ..|||.|+.....|.+...++... +.++.|..+......+.|.-..+|.-++.+.++.+
T Consensus        14 ~~~~~~~~~lv~f~-~~~C~~C~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~G~~~   86 (106)
T 3die_A           14 DSKVESGVQLVDFW-ATACGPCKMIAPVLEELAADYEGK-ADILKLDVDENPSTAAKYEVMSIPTLIVFKDGQPV   86 (106)
T ss_dssp             HHHSCSSEEEEEEE-CSBCHHHHHHHHHHHHHHHHTTTT-CEEEEEETTTCHHHHHHTTCCSBSEEEEEETTEEE
T ss_pred             HHHhcCCcEEEEEE-CCCCHHHHHHhHHHHHHHHHhcCC-cEEEEEECCcCHHHHHhCCCcccCEEEEEeCCeEE
Confidence            34445666666665 899999999999998887777643 88888887665543455544556655555544443

>1xfl_A Thioredoxin H1; AT3G51030, structural genomics, protein structure initiative, CESG, center for eukaryotic structural genomics; NMR {Arabidopsis thaliana} SCOP: c.47.1.1

Probab=97.39  E-value=0.0012  Score=54.51  Aligned_cols=40  Identities=15%  Similarity=0.092  Sum_probs=28.6

Q ss_pred             CCCEEEEeecCCCCcchHHHHHHHHhccchhhhcCCeEEEEec
Q 015842          229 ESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLH  271 (399)
Q Consensus       229 ~~pvVLvFyRg~gCP~Cr~el~~L~e~~pef~alGV~LVaIsp  271 (399)
                      ++++||.|+ ..|||.|+.....|.++..++.  ++.++.|..
T Consensus        38 ~k~vvv~f~-a~wC~~C~~~~~~l~~l~~~~~--~v~~~~vd~   77 (124)
T 1xfl_A           38 KTLVVVDFT-ASWCGPCRFIAPFFADLAKKLP--NVLFLKVDT   77 (124)
T ss_dssp             TCEEEEEEE-CTTCHHHHHHHHHHHHHHHHCS--SEEEEEEET
T ss_pred             CCEEEEEEE-CCCCHHHHHHHHHHHHHHHHCC--CcEEEEEEC
Confidence            445555554 5999999999999887766654  566666653

>2j23_A Thioredoxin; immune protein, autoreactivity, cross-reactivity, IGE, fungi, epitope, allergen; 1.41A {Malassezia sympodialis}

Probab=97.38  E-value=0.00025  Score=58.02  Aligned_cols=74  Identities=9%  Similarity=0.038  Sum_probs=50.4

Q ss_pred             chhhccCCCEEEEeecCCCCcchHHHHHHHHhccchhhhcCCeEEEEecCChhhHHhhhcCCCCCceeEeccch
Q 015842          223 ALELWRESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLHEYIESEVKDFWPRYWGGVVVYDQGM  296 (399)
Q Consensus       223 LsdL~~~~pvVLvFyRg~gCP~Cr~el~~L~e~~pef~alGV~LVaIspE~~e~~ik~F~~~~l~f~VLsDp~r  296 (399)
                      +.+++++++.+|++|-..|||.|+.....|.++..++...|+.++.|..+......+.|.-..+|.-++.+.++
T Consensus        26 f~~~l~~~k~vvv~f~a~~C~~C~~~~~~l~~l~~~~~~~~v~~~~vd~d~~~~~~~~~~v~~~Pt~~~~~~G~   99 (121)
T 2j23_A           26 FKQVTGGDKVVVIDFWATWCGPCKMIGPVFEKISDTPAGDKVGFYKVDVDEQSQIAQEVGIRAMPTFVFFKNGQ   99 (121)
T ss_dssp             HHHHHSSSSCEEEEEECTTCSTHHHHHHHHHHHHTSTHHHHSEEEEEETTTCHHHHHHHTCCSSSEEEEEETTE
T ss_pred             HHHHHcCCCEEEEEEECCCCHhHHHHHHHHHHHHHHCcCCcEEEEEEECcCCHHHHHHcCCCcccEEEEEECCe
Confidence            34455555444455557999999999999998888888778999999877654434555435566555555443

>2vim_A Thioredoxin, TRX; thioredoxin fold, oxidoreductase; 1.38A {Fasciola hepatica}

Probab=97.23  E-value=0.00047  Score=53.49  Aligned_cols=65  Identities=15%  Similarity=0.081  Sum_probs=44.6

Q ss_pred             CCCEEEEeecCCCCcchHHHHHHHHhccchhhhcCCeEEEEecCChhhHHhhhcCCCCCceeEeccch
Q 015842          229 ESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLHEYIESEVKDFWPRYWGGVVVYDQGM  296 (399)
Q Consensus       229 ~~pvVLvFyRg~gCP~Cr~el~~L~e~~pef~alGV~LVaIspE~~e~~ik~F~~~~l~f~VLsDp~r  296 (399)
                      ++++||.|+ ..|||.|+.....|.+...++.  ++.++.|..+......+.|.-..+|.-++.+.++
T Consensus        19 ~~~~~v~f~-~~~C~~C~~~~~~l~~~~~~~~--~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~g~   83 (104)
T 2vim_A           19 GRLIVVDFF-AQWCGPCRNIAPKVEALAKEIP--EVEFAKVDVDQNEEAAAKYSVTAMPTFVFIKDGK   83 (104)
T ss_dssp             TSCEEEEEE-CTTCHHHHHHHHHHHHHHHHCT--TSEEEEEETTTCHHHHHHTTCCSSSEEEEEETTE
T ss_pred             CCeEEEEEE-CCCCHHHHHhhHHHHHHHHHCC--CCEEEEEeccCCHHHHHHcCCccccEEEEEeCCc
Confidence            456665555 8999999999999988776664  7999999877654434555435666555554433

>2i4a_A Thioredoxin; acidophIle, disulfide exchange, oxidoreductase; 1.00A {Acetobacter aceti}

Probab=97.20  E-value=0.0005  Score=53.63  Aligned_cols=62  Identities=10%  Similarity=0.020  Sum_probs=41.7

Q ss_pred             CCCEEEEeecCCCCcchHHHHHHHHhccchhhhcCCeEEEEecCChhhHHhhhcCCCCCceeEe
Q 015842          229 ESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLHEYIESEVKDFWPRYWGGVVVY  292 (399)
Q Consensus       229 ~~pvVLvFyRg~gCP~Cr~el~~L~e~~pef~alGV~LVaIspE~~e~~ik~F~~~~l~f~VLs  292 (399)
                      ++++||.|+ ..|||.|+.....|.++..++.. ++.++.|..+......+.|.-..+|.-++.
T Consensus        20 ~~~~lv~f~-~~~C~~C~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~   81 (107)
T 2i4a_A           20 SGLVLVDFW-AEWCGPCKMIGPALGEIGKEFAG-KVTVAKVNIDDNPETPNAYQVRSIPTLMLV   81 (107)
T ss_dssp             SSEEEEEEE-CTTCHHHHHHHHHHHHHHHHHTT-SEEEEEEETTTCCHHHHHTTCCSSSEEEEE
T ss_pred             CCEEEEEEE-CCCChhHHHHhHHHHHHHHHhCC-cEEEEEEECCCCHHHHHhcCCCccCEEEEE
Confidence            445555555 79999999999999887777754 688888876654433444543455544444

>1sen_A Thioredoxin-like protein P19; endoplasmic reticulum, RP19, structural genomics, PSI, protein structure initiative; 1.20A {Homo sapiens} SCOP: c.47.1.1 PDB: 2k8v_A

Probab=97.16  E-value=0.00021  Score=62.29  Aligned_cols=70  Identities=19%  Similarity=0.244  Sum_probs=48.0

Q ss_pred             ccCCCEEEEeecCCCCcchHHHHHHHHhccchhhhcCCeEEEEecCChhh-HHhhhcC--CCCCceeEeccchHH
Q 015842          227 WRESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLHEYIES-EVKDFWP--RYWGGVVVYDQGMEF  298 (399)
Q Consensus       227 ~~~~pvVLvFyRg~gCP~Cr~el~~L~e~~pef~alGV~LVaIspE~~e~-~ik~F~~--~~l~f~VLsDp~r~l  298 (399)
                      .+++|+||.|+ ..|||.|+.+...|.+.. +....++.++.|..+.... ....|.-  ..+|.-++.|++.++
T Consensus        44 ~~~k~vlv~F~-a~WC~~C~~~~p~l~~~~-~~~~~~~~~~~v~~d~~~~~~~~~~~~~~~~~Pt~~~~d~~G~~  116 (164)
T 1sen_A           44 ASGLPLMVIIH-KSWCGACKALKPKFAEST-EISELSHNFVMVNLEDEEEPKDEDFSPDGGYIPRILFLDPSGKV  116 (164)
T ss_dssp             HHTCCEEEEEE-CTTCHHHHHHHHHHHTCH-HHHHHHTTSEEEEEEGGGSCSCGGGCTTCSCSSEEEEECTTSCB
T ss_pred             hcCCeEEEEEE-CCCCHHHHHHHHHHHHHH-HHhhcCCeEEEEEecCCchHHHHHhcccCCcCCeEEEECCCCCE
Confidence            35678887777 799999999999998853 3444467888887654432 1334443  447777888877554

>3hz4_A Thioredoxin; NYSGXRC, PSI-II, reduced form, protein structure initiative, structural genomics; 2.30A {Methanosarcina mazei}

Probab=97.13  E-value=0.0036  Score=52.41  Aligned_cols=41  Identities=15%  Similarity=0.293  Sum_probs=29.9

Q ss_pred             CCCEEEEeecCCCCcchHHHHHHHHhccchhhhcCCeEEEEec
Q 015842          229 ESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLH  271 (399)
Q Consensus       229 ~~pvVLvFyRg~gCP~Cr~el~~L~e~~pef~alGV~LVaIsp  271 (399)
                      ++++||.|+ ..||+.|+.....|.++..++.. .+.++.|-.
T Consensus        24 ~~~vlv~F~-a~wC~~C~~~~~~l~~l~~~~~~-~v~~~~vd~   64 (140)
T 3hz4_A           24 KKPVVVMFY-SPACPYCKAMEPYFEEYAKEYGS-SAVFGRINI   64 (140)
T ss_dssp             SSCEEEEEE-CTTCHHHHHHHHHHHHHHHHHTT-TSEEEEEET
T ss_pred             CCcEEEEEE-CCCChhHHHHHHHHHHHHHHhCC-ceEEEEEEC
Confidence            456665555 78999999999999887776654 366666653

>3f3q_A Thioredoxin-1; His TAG, electron transport, cytoplasm, deoxyribonucleotide synthesis, golgi apparatus, membrane, nucleus; 1.76A {Saccharomyces cerevisiae} PDB: 3f3r_A* 2i9h_A 2fa4_A 2hsy_A 3pin_A 4dss_B

Probab=97.06  E-value=0.00085  Score=53.78  Aligned_cols=77  Identities=8%  Similarity=0.059  Sum_probs=52.1

Q ss_pred             ceechhhccCCCEEEEeecCCCCcchHHHHHHHHhccchhhhcCCeEEEEecCChhhHHhhhcCCCCCceeEeccchHH
Q 015842          220 PMKALELWRESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLHEYIESEVKDFWPRYWGGVVVYDQGMEF  298 (399)
Q Consensus       220 ~VsLsdL~~~~pvVLvFyRg~gCP~Cr~el~~L~e~~pef~alGV~LVaIspE~~e~~ik~F~~~~l~f~VLsDp~r~l  298 (399)
                      .-.+.++.++++.||++|-..||+.|+.....|.++..++.  ++.++.|-.+......+.|.-..+|.-++.+.++.+
T Consensus        14 ~~~f~~~~~~~k~vlv~f~a~wC~~C~~~~p~l~~l~~~~~--~~~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~~G~~~   90 (109)
T 3f3q_A           14 ASEFDSAIAQDKLVVVDFYATWCGPCKMIAPMIEKFSEQYP--QADFYKLDVDELGDVAQKNEVSAMPTLLLFKNGKEV   90 (109)
T ss_dssp             HHHHHHHTTSSSCEEEEEECTTCHHHHHHHHHHHHHHHHCT--TSEEEEEETTTCHHHHHHTTCCSSSEEEEEETTEEE
T ss_pred             HHHHHHHHhcCCEEEEEEECCcCHhHHHHHHHHHHHHHHCC--CCEEEEEECCCCHHHHHHcCCCccCEEEEEECCEEE
Confidence            34456666655556666668899999999999888776664  488888877655443445544566766666655443

>3uvt_A Thioredoxin domain-containing protein 5; thioredoxin-like fold, isomerase; 2.00A {Homo sapiens} PDB: 2diz_A 3uj1_A

Probab=97.03  E-value=0.00084  Score=52.66  Aligned_cols=74  Identities=12%  Similarity=0.074  Sum_probs=47.0

Q ss_pred             chhhccCCCEEEEeecCCCCcchHHHHHHHHhccchhhhc--CCeEEEEecCChhhHHhhhcCCCCCceeEeccchH
Q 015842          223 ALELWRESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDAL--GIQLFAVLHEYIESEVKDFWPRYWGGVVVYDQGME  297 (399)
Q Consensus       223 LsdL~~~~pvVLvFyRg~gCP~Cr~el~~L~e~~pef~al--GV~LVaIspE~~e~~ik~F~~~~l~f~VLsDp~r~  297 (399)
                      +.+++.++++||.| -..||+.|+.....|.+...++...  ++.++.|-.+......+.|.-..+|.-++...++.
T Consensus        15 ~~~~~~~~~~lv~f-~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~~g~~   90 (111)
T 3uvt_A           15 FDDTIAEGITFIKF-YAPWCGHCKTLAPTWEELSKKEFPGLAGVKIAEVDCTAERNICSKYSVRGYPTLLLFRGGKK   90 (111)
T ss_dssp             HHHHHHSSEEEEEE-ECSSCHHHHHHHHHHHHHHTCCCCC-CCEEEEEEETTTCHHHHHHTTCCSSSEEEEEETTEE
T ss_pred             HHHHhcCCcEEEEE-ECCCChhHHHhhHHHHHHHHHhhccCCceEEEEEeccccHhHHHhcCCCcccEEEEEeCCcE
Confidence            34445566665555 5689999999999888877665543  67777787665544344454355665455444433

>2vm1_A Thioredoxin, thioredoxin H isoform 1.; oxidoreductase, protein disulfide reductase, thioredoxin-FOL; 1.7A {Hordeum vulgare var} PDB: 2vm2_A

Probab=97.00  E-value=0.0013  Score=52.31  Aligned_cols=62  Identities=11%  Similarity=0.093  Sum_probs=42.4

Q ss_pred             CCCEEEEeecCCCCcchHHHHHHHHhccchhhhcCCeEEEEecCChhhHHhhhcCCCCCceeEec
Q 015842          229 ESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLHEYIESEVKDFWPRYWGGVVVYD  293 (399)
Q Consensus       229 ~~pvVLvFyRg~gCP~Cr~el~~L~e~~pef~alGV~LVaIspE~~e~~ik~F~~~~l~f~VLsD  293 (399)
                      ++++||.|+ ..|||.|+.....|.++..++.  ++.++.|..+......+.|.-..+|.-++..
T Consensus        28 ~~~~vv~f~-~~~C~~C~~~~~~l~~~~~~~~--~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~   89 (118)
T 2vm1_A           28 GKLVIIDFT-ASWCGPCRVIAPVFAEYAKKFP--GAIFLKVDVDELKDVAEAYNVEAMPTFLFIK   89 (118)
T ss_dssp             TCCEEEEEE-CTTCHHHHHHHHHHHHHHHHCT--TSEEEEEETTTSHHHHHHTTCCSBSEEEEEE
T ss_pred             CCEEEEEEE-CCCCHhHHHHhHHHHHHHHHCC--CcEEEEEEcccCHHHHHHcCCCcCcEEEEEe
Confidence            567776666 5899999999998888776664  7889888876544334445434555444443

>3d6i_A Monothiol glutaredoxin-3; thioredoxin-like, electron transport, redox- active center, transport, oxidoreductase; HET: CME; 1.50A {Saccharomyces cerevisiae}

Probab=96.96  E-value=0.0017  Score=51.50  Aligned_cols=65  Identities=9%  Similarity=-0.012  Sum_probs=42.4

Q ss_pred             CCCEEEEeecCCCCcchHHHHHHHHhccchhhhcCCeEEEEecCChhhHHhhhcCCCCCceeEecc
Q 015842          229 ESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLHEYIESEVKDFWPRYWGGVVVYDQ  294 (399)
Q Consensus       229 ~~pvVLvFyRg~gCP~Cr~el~~L~e~~pef~alGV~LVaIspE~~e~~ik~F~~~~l~f~VLsDp  294 (399)
                      ++++||.| -..|||.|+.....|.++..+++..++.++.|-.+......+.|.-..+|.-++...
T Consensus        21 ~~~~~v~f-~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~   85 (112)
T 3d6i_A           21 DKLIVLYF-HTSWAEPCKALKQVFEAISNEPSNSNVSFLSIDADENSEISELFEISAVPYFIIIHK   85 (112)
T ss_dssp             TCCEEEEE-ECCC--CHHHHHHHHHHHHHCGGGTTSEEEEEETTTCHHHHHHTTCCSSSEEEEEET
T ss_pred             CCEEEEEE-ECCCCHHHHHHHHHHHHHHHhcCCCCEEEEEEecccCHHHHHHcCCCcccEEEEEEC
Confidence            45555555 568999999999999888777766689999998765544344554345555444433

>1nsw_A Thioredoxin, TRX; thermostability, electron transport; 1.90A {Alicyclobacillus acidocaldarius} SCOP: c.47.1.1 PDB: 1rqm_A 1quw_A 1nw2_A

Probab=96.95  E-value=0.0014  Score=51.19  Aligned_cols=67  Identities=10%  Similarity=0.072  Sum_probs=42.6

Q ss_pred             hhccC-CCEEEEeecCCCCcchHHHHHHHHhccchhhhcCCeEEEEecCChhhHHhhhcCCCCCceeEec
Q 015842          225 ELWRE-SPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLHEYIESEVKDFWPRYWGGVVVYD  293 (399)
Q Consensus       225 dL~~~-~pvVLvFyRg~gCP~Cr~el~~L~e~~pef~alGV~LVaIspE~~e~~ik~F~~~~l~f~VLsD  293 (399)
                      ++.+. +++||.|+ ..|||.|+.....|.++..++.. .+.++.|..+......+.|.-..+|--++..
T Consensus        12 ~~~~~~~~~~v~f~-~~~C~~C~~~~~~l~~~~~~~~~-~v~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~   79 (105)
T 1nsw_A           12 QAIQGDGPVLVDFW-AAWCGPCRMMAPVLEEFAEAHAD-KVTVAKLNVDENPETTSQFGIMSIPTLILFK   79 (105)
T ss_dssp             HHHSSSSCEEEEEE-CTTCHHHHHHHHHHHHHHHHSTT-TCEEEEEETTTCHHHHHHTTCCSSSEEEEEE
T ss_pred             HHHhCCCcEEEEEE-CCCCHHHHHHHHHHHHHHHHhcC-CcEEEEEECcCCHHHHHHcCCccccEEEEEe
Confidence            44444 45555554 79999999999998887666654 3788888766544334444434555444443

>2dj1_A Protein disulfide-isomerase A4; protein ERP-72, ERP72, CAI, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=96.94  E-value=0.002  Score=53.05  Aligned_cols=72  Identities=14%  Similarity=0.126  Sum_probs=46.5

Q ss_pred             hhhccCCCEEEEeecCCCCcchHHHHHHHHhccchhhhcC--CeEEEEecCChhhHHhhhcCCCCCceeEeccc
Q 015842          224 LELWRESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALG--IQLFAVLHEYIESEVKDFWPRYWGGVVVYDQG  295 (399)
Q Consensus       224 sdL~~~~pvVLvFyRg~gCP~Cr~el~~L~e~~pef~alG--V~LVaIspE~~e~~ik~F~~~~l~f~VLsDp~  295 (399)
                      .++..+++.+|++|-..||+.|+.....|.++..++...+  +.++.|-.+......+.|.-..+|.-++.+.+
T Consensus        28 ~~~~~~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~G  101 (140)
T 2dj1_A           28 DNFVADKDTVLLEFYAPWCGHCKQFAPEYEKIASTLKDNDPPIAVAKIDATSASMLASKFDVSGYPTIKILKKG  101 (140)
T ss_dssp             HHHHTTCSEEEEEECCTTCHHHHTTHHHHHHHHHHHHSSSSCCEEEEECTTTCHHHHHHTTCCSSSEEEEEETT
T ss_pred             HHHHhcCCeEEEEEECCCCHHHHHhhHHHHHHHHHHhccCCceEEEEEeCcccHHHHHHCCCCccCeEEEEECC
Confidence            3444555556666667999999999999998888887764  66666665543333444443455655555433

>1fb6_A Thioredoxin M; electron transport; 2.10A {Spinacia oleracea} SCOP: c.47.1.1 PDB: 1fb0_A 1gl8_A 2puk_C

Probab=96.92  E-value=0.0021  Score=49.82  Aligned_cols=62  Identities=15%  Similarity=0.206  Sum_probs=41.2

Q ss_pred             CCCEEEEeecCCCCcchHHHHHHHHhccchhhhcCCeEEEEecCChhhHHhhhcCCCCCceeEe
Q 015842          229 ESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLHEYIESEVKDFWPRYWGGVVVY  292 (399)
Q Consensus       229 ~~pvVLvFyRg~gCP~Cr~el~~L~e~~pef~alGV~LVaIspE~~e~~ik~F~~~~l~f~VLs  292 (399)
                      ++++||.|+ ..|||.|+.....|.++..++.. .+.++.|..+......+.|.-..+|.-++.
T Consensus        18 ~~~~~v~f~-~~~C~~C~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~   79 (105)
T 1fb6_A           18 EVPVMVDFW-APWCGPCKLIAPVIDELAKEYSG-KIAVYKLNTDEAPGIATQYNIRSIPTVLFF   79 (105)
T ss_dssp             SSCEEEEEE-CTTCHHHHHHHHHHHHHHHHTTT-TCEEEEEETTTCHHHHHHTTCCSSSEEEEE
T ss_pred             CCcEEEEEE-CCCChHHHHHHHHHHHHHHHhcC-ceEEEEEcCcchHHHHHhCCCCcccEEEEE
Confidence            456766666 69999999999999887766654 378888876654433444443455543333

>1syr_A Thioredoxin; SGPP, structural genomics, PSI, protein structure initiative structural genomics of pathogenic protozoa consortium; 2.95A {Plasmodium falciparum} SCOP: c.47.1.1

Probab=96.92  E-value=0.0012  Score=52.83  Aligned_cols=64  Identities=8%  Similarity=-0.033  Sum_probs=43.3

Q ss_pred             chhhccCCCEEEEeecCCCCcchHHHHHHHHhccchhhhcCCeEEEEecCChhhHHhhhcCCCCCc
Q 015842          223 ALELWRESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLHEYIESEVKDFWPRYWGG  288 (399)
Q Consensus       223 LsdL~~~~pvVLvFyRg~gCP~Cr~el~~L~e~~pef~alGV~LVaIspE~~e~~ik~F~~~~l~f  288 (399)
                      +.++.++++.+|++|-..||+.|+.....|.++..++.  ++.++.|-.+......+.|.-..+|.
T Consensus        19 f~~~~~~~k~vlv~f~a~~C~~C~~~~~~l~~l~~~~~--~v~~~~vd~~~~~~~~~~~~v~~~Pt   82 (112)
T 1syr_A           19 FDSIISQNELVIVDFFAEWCGPCKRIAPFYEECSKTYT--KMVFIKVDVDEVSEVTEKENITSMPT   82 (112)
T ss_dssp             HHHHHHHCSEEEEEEECTTCHHHHHHHHHHHHHHHHCT--TSEEEEEETTTTHHHHHHTTCCSSSE
T ss_pred             HHHHHccCCeEEEEEECCCCHHHHHHHHHHHHHHHHcC--CCEEEEEECCCCHHHHHHcCCCcccE
Confidence            44555555555555568899999999999988776664  68999998765544344454345554

>3aps_A DNAJ homolog subfamily C member 10; thioredoxin fold, CXXC motif, endoplasmic reticulum, oxidore; 1.90A {Mus musculus}

Probab=96.88  E-value=0.0019  Score=51.93  Aligned_cols=70  Identities=11%  Similarity=0.033  Sum_probs=49.2

Q ss_pred             CCCEEEEeecCCCCcchHHHHHHHHhccchhhhcCCeEEEEecCChhhHHhhhcCCCCCceeEeccchHHHH
Q 015842          229 ESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLHEYIESEVKDFWPRYWGGVVVYDQGMEFFK  300 (399)
Q Consensus       229 ~~pvVLvFyRg~gCP~Cr~el~~L~e~~pef~alGV~LVaIspE~~e~~ik~F~~~~l~f~VLsDp~r~lYk  300 (399)
                      ++++||.| -..||+.|+.....|.++..++.. ++.++.|-.+......+.|.-..+|--++.|.+..+.+
T Consensus        21 ~~~~lv~f-~a~~C~~C~~~~~~~~~~~~~~~~-~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~~~~~~~   90 (122)
T 3aps_A           21 KTHWVVDF-YAPWCGPCQNFAPEFELLARMIKG-KVRAGKVDCQAYPQTCQKAGIKAYPSVKLYQYERAKKS   90 (122)
T ss_dssp             SSCEEEEE-ECTTCHHHHHHHHHHHHHHHHHTT-TCEEEEEETTTCHHHHHHTTCCSSSEEEEEEEEGGGTE
T ss_pred             CCeEEEEE-ECCCCHHHHHHHHHHHHHHHHhcC-CeEEEEEeCcCCHHHHHHcCCCccceEEEEeCCCccce
Confidence            34555555 568999999999999887777654 68888888765544345554456777777777776443

>3m9j_A Thioredoxin; oxidoreductase; 1.10A {Homo sapiens} SCOP: c.47.1.1 PDB: 3m9k_A 2hsh_A 1erv_A 2ifq_A 2ifq_B 1auc_A 1eru_A 1ert_A 3kd0_A 1aiu_A 3trx_A 4trx_A 1trs_A 1tru_A 1trv_A 1trw_A 3e3e_A* 1cqg_A 1cqh_A 1mdi_A ...

Probab=96.86  E-value=0.0016  Score=50.67  Aligned_cols=66  Identities=8%  Similarity=0.071  Sum_probs=44.6

Q ss_pred             CCCEEEEeecCCCCcchHHHHHHHHhccchhhhcCCeEEEEecCChhhHHhhhcCCCCCceeEeccchH
Q 015842          229 ESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLHEYIESEVKDFWPRYWGGVVVYDQGME  297 (399)
Q Consensus       229 ~~pvVLvFyRg~gCP~Cr~el~~L~e~~pef~alGV~LVaIspE~~e~~ik~F~~~~l~f~VLsDp~r~  297 (399)
                      ++++||.|+ ..|||.|+.....|.+...++.  ++.++.|-.+......+.|.-..+|--++.+.++.
T Consensus        20 ~~~~~v~f~-~~~C~~C~~~~~~~~~~~~~~~--~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~~   85 (105)
T 3m9j_A           20 DKLVVVDFS-ATWCGPCKMIKPFFHSLSEKYS--NVIFLEVDVDDCQDVASESEVKSMPTFQFFKKGQK   85 (105)
T ss_dssp             TSCEEEEEE-CTTCHHHHHHHHHHHHHHHHST--TSEEEEEETTTCHHHHHHTTCCBSSEEEEEETTEE
T ss_pred             CCeEEEEEE-CCCChhhHHHHHHHHHHHHHcc--CeEEEEEEhhhhHHHHHHcCCCcCcEEEEEECCeE
Confidence            456665555 5899999999999988776664  48888888766544345554355665555555443

>1t00_A Thioredoxin, TRX; redox regulation, multifunction macromolecule, electron transport; 1.51A {Streptomyces coelicolor}

Probab=96.85  E-value=0.0022  Score=50.71  Aligned_cols=58  Identities=14%  Similarity=0.109  Sum_probs=39.3

Q ss_pred             CCCEEEEeecCCCCcchHHHHHHHHhccchhhhcCCeEEEEecCChhhHHhhhcCCCCCc
Q 015842          229 ESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLHEYIESEVKDFWPRYWGG  288 (399)
Q Consensus       229 ~~pvVLvFyRg~gCP~Cr~el~~L~e~~pef~alGV~LVaIspE~~e~~ik~F~~~~l~f  288 (399)
                      ++++||.| -..|||.|+.....|.++..++.. .+.++.|..+......+.|.-..+|-
T Consensus        23 ~~~~vv~f-~~~~C~~C~~~~~~l~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~v~~~Pt   80 (112)
T 1t00_A           23 DKPVLVDF-WAAWCGPCRQIAPSLEAIAAEYGD-KIEIVKLNIDENPGTAAKYGVMSIPT   80 (112)
T ss_dssp             SSCEEEEE-ECTTCHHHHHHHHHHHHHHHHTTT-TCEEEEEETTTCHHHHHHTTCCSSSE
T ss_pred             CCeEEEEE-ECCCCHhHHhcCHHHHHHHHHhcC-CeEEEEEEcCCCHHHHHhCCCCcccE
Confidence            44555555 479999999999998887776654 48888888765444344454345554

>2yzu_A Thioredoxin; redox protein, electron transport, structural genomics; 1.90A {Thermus thermophilus} PDB: 2cvk_A

Probab=96.85  E-value=0.0015  Score=50.72  Aligned_cols=67  Identities=10%  Similarity=0.067  Sum_probs=43.2

Q ss_pred             hhcc-CCCEEEEeecCCCCcchHHHHHHHHhccchhhhcCCeEEEEecCChhhHHhhhcCCCCCceeEec
Q 015842          225 ELWR-ESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLHEYIESEVKDFWPRYWGGVVVYD  293 (399)
Q Consensus       225 dL~~-~~pvVLvFyRg~gCP~Cr~el~~L~e~~pef~alGV~LVaIspE~~e~~ik~F~~~~l~f~VLsD  293 (399)
                      ++.+ ++++||.|+ ..|||.|+.....|.++..++.. ++.++.|..+......+.|.-..+|.-++..
T Consensus        13 ~~~~~~~~~lv~f~-~~~C~~C~~~~~~l~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~   80 (109)
T 2yzu_A           13 ETLGQHPLVLVDFW-AEWCAPCRMIAPILEEIAKEYEG-KLLVAKLDVDENPKTAMRYRVMSIPTVILFK   80 (109)
T ss_dssp             HHHHHCSEEEEEEE-CTTCHHHHHHHHHHHHHHHHTBT-TBEEEEEETTTCHHHHHHTTCCSSSEEEEEE
T ss_pred             HHhcCCCeEEEEEE-CCCCHHHHHhhHHHHHHHHHhhC-ceEEEEEECCCCHhHHHhCCCCcCCEEEEEe
Confidence            3344 445555554 89999999999988887766653 4888888866544434455434555544443

>3qfa_C Thioredoxin; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_C*

Probab=96.82  E-value=0.002  Score=52.27  Aligned_cols=64  Identities=6%  Similarity=0.028  Sum_probs=42.9

Q ss_pred             CCCEEEEeecCCCCcchHHHHHHHHhccchhhhcCCeEEEEecCChhhHHhhhcCCCCCceeEeccc
Q 015842          229 ESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLHEYIESEVKDFWPRYWGGVVVYDQG  295 (399)
Q Consensus       229 ~~pvVLvFyRg~gCP~Cr~el~~L~e~~pef~alGV~LVaIspE~~e~~ik~F~~~~l~f~VLsDp~  295 (399)
                      ++++||.| -..||+.|+.....|.++..++..  +.++.|-.+......+.|.-..+|--++...+
T Consensus        31 ~k~vlv~F-~a~wC~~C~~~~p~l~~l~~~~~~--v~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~G   94 (116)
T 3qfa_C           31 DKLVVVDF-SATWCGPSKMIKPFFHSLSEKYSN--VIFLEVDVDDCQDVASECEVKSMPTFQFFKKG   94 (116)
T ss_dssp             TSCEEEEE-ECTTCHHHHHHHHHHHHHHTTCTT--SEEEEEETTTTHHHHHHTTCCSSSEEEEESSS
T ss_pred             CCEEEEEE-ECCCCHHHHHHHHHHHHHHHHCCC--CEEEEEECCCCHHHHHHcCCccccEEEEEeCC
Confidence            45555555 467999999999999888777754  88888887655443455543555654444433

>2l5l_A Thioredoxin; structural genomics, electron transport, PSI-2, protein STRU initiative; NMR {Bacteroides vulgatus}

Probab=96.81  E-value=0.0021  Score=53.49  Aligned_cols=68  Identities=18%  Similarity=0.143  Sum_probs=48.7

Q ss_pred             CCCEEEEeecCCCCcchHHHHHHHHhccchhhhcCCeEEEEecCChhhHHhhhcCCCCCceeEeccchHH
Q 015842          229 ESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLHEYIESEVKDFWPRYWGGVVVYDQGMEF  298 (399)
Q Consensus       229 ~~pvVLvFyRg~gCP~Cr~el~~L~e~~pef~alGV~LVaIspE~~e~~ik~F~~~~l~f~VLsDp~r~l  298 (399)
                      ++++||.|+ ..||+.|+.....|.++..++.. ++.++.|-.+......+.|.-..+|--++.|.+.+.
T Consensus        38 ~k~~lv~f~-a~wC~~C~~~~~~l~~l~~~~~~-~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~~~G~~  105 (136)
T 2l5l_A           38 DKPAIVDFY-ADWCGPCKMVAPILDELAKEYDG-QIVIYKVDTEKEQELAGAFGIRSIPSILFIPMEGKP  105 (136)
T ss_dssp             SSCEEEEEE-CTTSHHHHHHHHHHHHHHHHTTT-TCEEEEEETTTCHHHHHHTTCCSSCEEEEECSSSCC
T ss_pred             CCEEEEEEE-CCcCHHHHHHHHHHHHHHHHhcC-CEEEEEEeCCCCHHHHHHcCCCCCCEEEEECCCCcE
Confidence            456666665 68999999999999887766653 488888887655443455544567777888777654

>1xwb_A Thioredoxin; dimerization, redox regulation, THI X-RAY electron transport; 2.20A {Drosophila melanogaster} SCOP: c.47.1.1 PDB: 1xw9_A 1xwc_A 1xwa_A

Probab=96.80  E-value=0.0023  Score=49.67  Aligned_cols=61  Identities=15%  Similarity=0.067  Sum_probs=40.3

Q ss_pred             CCCEEEEeecCCCCcchHHHHHHHHhccchhhhcCCeEEEEecCChhhHHhhhcCCCCCceeE
Q 015842          229 ESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLHEYIESEVKDFWPRYWGGVVV  291 (399)
Q Consensus       229 ~~pvVLvFyRg~gCP~Cr~el~~L~e~~pef~alGV~LVaIspE~~e~~ik~F~~~~l~f~VL  291 (399)
                      ++++||.| -..|||.|+.....|.+...++. .++.++.|..+......+.|.-..+|--++
T Consensus        20 ~~~~vv~f-~~~~C~~C~~~~~~l~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~   80 (106)
T 1xwb_A           20 GKLVVLDF-FATWCGPCKMISPKLVELSTQFA-DNVVVLKVDVDECEDIAMEYNISSMPTFVF   80 (106)
T ss_dssp             TSEEEEEE-ECTTCHHHHHHHHHHHHHHHHTT-TTEEEEEEETTTCHHHHHHTTCCSSSEEEE
T ss_pred             CCEEEEEE-ECCcCHHHHHhhHHHHHHHHHhC-CCeEEEEEeccchHHHHHHcCCCcccEEEE
Confidence            44555554 56899999999999988776665 468888888765544344454345554333

>1ep7_A Thioredoxin CH1, H-type; electron transport; 2.10A {Chlamydomonas reinhardtii} SCOP: c.47.1.1 PDB: 1tof_A 1ep8_A

Probab=96.80  E-value=0.0014  Score=51.63  Aligned_cols=58  Identities=10%  Similarity=0.037  Sum_probs=41.6

Q ss_pred             CCCEEEEeecCCCCcchHHHHHHHHhccchhhhcCCeEEEEecCChhhHHhhhcCCCCCc
Q 015842          229 ESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLHEYIESEVKDFWPRYWGG  288 (399)
Q Consensus       229 ~~pvVLvFyRg~gCP~Cr~el~~L~e~~pef~alGV~LVaIspE~~e~~ik~F~~~~l~f  288 (399)
                      ++++||.|+ ..|||.|+.....|.++..++.. ++.++.|..+......+.|.-..+|-
T Consensus        24 ~~~~vv~f~-~~~C~~C~~~~~~l~~~~~~~~~-~~~~~~vd~~~~~~~~~~~~v~~~Pt   81 (112)
T 1ep7_A           24 HKPIVVDFT-ATWCGPCKMIAPLFETLSNDYAG-KVIFLKVDVDAVAAVAEAAGITAMPT   81 (112)
T ss_dssp             TCCEEEEEE-CTTCHHHHHHHHHHHHHHHHTTT-TSEEEEEETTTTHHHHHHHTCCBSSE
T ss_pred             CCeEEEEEE-CCCCHHHHHHHHHHHHHHHHcCC-CeEEEEEECCchHHHHHHcCCCcccE
Confidence            567776666 58999999999999887777654 78999998766544345554345554

>2oe3_A Thioredoxin-3; electron transport, alpha/beta sandwich, oxidized, dimer; 1.80A {Saccharomyces cerevisiae} PDB: 2oe1_A 2oe0_A

Probab=96.80  E-value=0.0013  Score=53.49  Aligned_cols=67  Identities=9%  Similarity=0.059  Sum_probs=43.0

Q ss_pred             chhhccCCCEEEEeecCCCCcchHHHHHHHHhccchhhhcCCeEEEEecCChhhHHhhhcCCCCCceeE
Q 015842          223 ALELWRESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLHEYIESEVKDFWPRYWGGVVV  291 (399)
Q Consensus       223 LsdL~~~~pvVLvFyRg~gCP~Cr~el~~L~e~~pef~alGV~LVaIspE~~e~~ik~F~~~~l~f~VL  291 (399)
                      +.++.+.++.+|++|-..|||.|+.....|.++..++..  +.++.|-.+......+.|.-..+|.-++
T Consensus        23 ~~~~~~~~k~vvv~F~a~wC~~C~~~~p~l~~~~~~~~~--v~~~~vd~~~~~~l~~~~~v~~~Pt~~~   89 (114)
T 2oe3_A           23 FRNLIKQNDKLVIDFYATWCGPCKMMQPHLTKLIQAYPD--VRFVKCDVDESPDIAKECEVTAMPTFVL   89 (114)
T ss_dssp             HHHHHHHCSEEEEEEECTTCHHHHHTHHHHHHHHHHCTT--SEEEEEETTTCHHHHHHTTCCSBSEEEE
T ss_pred             HHHHHhCCCEEEEEEECCCCHHHHHHHHHHHHHHHHCCC--CEEEEEECCCCHHHHHHCCCCcccEEEE
Confidence            344445444455555589999999999998887666643  8888888765443344454345554443

>3tco_A Thioredoxin (TRXA-1); disulfide oxidoreductase, oxidoreductase; 1.90A {Sulfolobus solfataricus} SCOP: c.47.1.0

Probab=96.76  E-value=0.002  Score=50.11  Aligned_cols=70  Identities=10%  Similarity=0.060  Sum_probs=45.2

Q ss_pred             hhccCCCEEEEeecCCCCcchHHHHHHHHhccchhhhcCCeEEEEecCChhhHHhhhcCCCCCceeEeccc
Q 015842          225 ELWRESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLHEYIESEVKDFWPRYWGGVVVYDQG  295 (399)
Q Consensus       225 dL~~~~pvVLvFyRg~gCP~Cr~el~~L~e~~pef~alGV~LVaIspE~~e~~ik~F~~~~l~f~VLsDp~  295 (399)
                      ++..+++.+|++|-..|||.|+.....|.+...++.. .+.++.|..+......+.|.-..+|.-++...+
T Consensus        16 ~~~~~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~~g   85 (109)
T 3tco_A           16 EVIRNNKLVLVDCWAEWCAPCHLYEPIYKKVAEKYKG-KAVFGRLNVDENQKIADKYSVLNIPTTLIFVNG   85 (109)
T ss_dssp             HHHHHSSEEEEEEECTTCHHHHHHHHHHHHHHHHTTT-TSEEEEEETTTCHHHHHHTTCCSSSEEEEEETT
T ss_pred             HHHhcCCeEEEEEECCCCHHHHhhhHHHHHHHHHhCC-CceEEEEccccCHHHHHhcCcccCCEEEEEcCC
Confidence            3344344445555589999999999998887776654 478888877655443455544556655554333

>1x5d_A Protein disulfide-isomerase A6; PDIA6, ERP5, TXNDC7, thioredoxin like domain, redox, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=96.74  E-value=0.0024  Score=51.90  Aligned_cols=68  Identities=13%  Similarity=0.138  Sum_probs=46.7

Q ss_pred             CCCEEEEeecCCCCcchHHHHHHHHhccchhhh---cCCeEEEEecCChhhHHhhhcCCCCCceeEeccch
Q 015842          229 ESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDA---LGIQLFAVLHEYIESEVKDFWPRYWGGVVVYDQGM  296 (399)
Q Consensus       229 ~~pvVLvFyRg~gCP~Cr~el~~L~e~~pef~a---lGV~LVaIspE~~e~~ik~F~~~~l~f~VLsDp~r  296 (399)
                      .++.+|++|-..||+.|+.....|.++..++..   .++.++.|-.+......+.|.-..+|--++.|.++
T Consensus        24 ~~~~~lv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~~g~   94 (133)
T 1x5d_A           24 SEDVWMVEFYAPWCGHCKNLEPEWAAAASEVKEQTKGKVKLAAVDATVNQVLASRYGIRGFPTIKIFQKGE   94 (133)
T ss_dssp             SSSEEEEEEECTTCHHHHTHHHHHHHHHHHHHHHTTTSEEEEEEETTTCCHHHHHHTCCSSSEEEEEETTE
T ss_pred             CCCeEEEEEECCCCHHHHhhcHHHHHHHHHHHhhcCCcEEEEEEECCCCHHHHHhCCCCeeCeEEEEeCCC
Confidence            344455555578999999999999888777763   45788888765543334555445677667777765

>4euy_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; 2.90A {Bacillus cereus}

Probab=96.72  E-value=0.0017  Score=51.25  Aligned_cols=73  Identities=15%  Similarity=0.201  Sum_probs=43.0

Q ss_pred             chhhccCCCEEEEeecCCCCcchHHHHHHHHhccchhhhcCCeEEEEecCChhhHHhhhcCCCCCceeEeccchH
Q 015842          223 ALELWRESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLHEYIESEVKDFWPRYWGGVVVYDQGME  297 (399)
Q Consensus       223 LsdL~~~~pvVLvFyRg~gCP~Cr~el~~L~e~~pef~alGV~LVaIspE~~e~~ik~F~~~~l~f~VLsDp~r~  297 (399)
                      +.++.++++.+|+.|-..||+.|+.....|.++..++.  ++.++.|-.+......+.|.-..+|--++.+.++.
T Consensus        11 ~~~~~~~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~--~~~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~~G~~   83 (105)
T 4euy_A           11 LATYIEEQQLVLLFIKTENCGVCDVMLRKVNYVLENYN--YVEKIEILLQDMQEIAGRYAVFTGPTVLLFYNGKE   83 (105)
T ss_dssp             CSSSTTCSSEEEEEEEESSCHHHHHHHHHHHHHHHTCT--TEEEEEEEECCC---------CCCCEEEEEETTEE
T ss_pred             HHHHHhcCCCEEEEEeCCCCcchHHHHHHHHHHHHHcC--CceEEEEECCCCHHHHHhcCCCCCCEEEEEeCCeE
Confidence            34445555556666667899999999988888766663  67888887655433234443345565555554443

>2dml_A Protein disulfide-isomerase A6; thioredoxin domain-containing protein 7, endoplasmic reticulum, redox-active center, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=96.67  E-value=0.0023  Score=52.04  Aligned_cols=67  Identities=9%  Similarity=0.079  Sum_probs=47.4

Q ss_pred             CCCEEEEeecCCCCcchHHHHHHHHhccchhhhcCCeEEEEecCChhhHHhhhcCCCCCceeEeccchH
Q 015842          229 ESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLHEYIESEVKDFWPRYWGGVVVYDQGME  297 (399)
Q Consensus       229 ~~pvVLvFyRg~gCP~Cr~el~~L~e~~pef~alGV~LVaIspE~~e~~ik~F~~~~l~f~VLsDp~r~  297 (399)
                      ++++||.| -..||+.|+.....|.++..++.. .+.++.|-.+......+.|.-..+|--++.|.+..
T Consensus        35 ~~~~lv~f-~a~wC~~C~~~~~~~~~~~~~~~~-~~~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~~~~~  101 (130)
T 2dml_A           35 DGLWLVEF-YAPWCGHCQRLTPEWKKAATALKD-VVKVGAVNADKHQSLGGQYGVQGFPTIKIFGANKN  101 (130)
T ss_dssp             SSCEEEEE-ECTTCSTTGGGHHHHHHHHHHTTT-TSEEEEEETTTCHHHHHHHTCCSSSEEEEESSCTT
T ss_pred             CCeEEEEE-ECCCCHHHHhhCHHHHHHHHHhcC-ceEEEEEeCCCCHHHHHHcCCCccCEEEEEeCCCC
Confidence            44555555 468999999999988887766654 37888887765544345554466777788888765

>3ul3_B Thioredoxin, thioredoxin-2; PTEX, oxidoreductase; 2.90A {Plasmodium falciparum}

Probab=96.63  E-value=0.0034  Score=51.50  Aligned_cols=69  Identities=14%  Similarity=0.226  Sum_probs=46.5

Q ss_pred             cCCCEEEEeecCCCCcchHHHHHHHHhccchhhhcCCeEEEEecCChhhHHhhhcCCCCCceeEeccchHH
Q 015842          228 RESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLHEYIESEVKDFWPRYWGGVVVYDQGMEF  298 (399)
Q Consensus       228 ~~~pvVLvFyRg~gCP~Cr~el~~L~e~~pef~alGV~LVaIspE~~e~~ik~F~~~~l~f~VLsDp~r~l  298 (399)
                      +++++||.|+ ..||+.|+.....|.++..++.. ++.++.|..+......+.|.-..+|--++.+.++.+
T Consensus        41 ~~k~vlv~F~-a~wC~~C~~~~p~l~~~~~~~~~-~v~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~G~~~  109 (128)
T 3ul3_B           41 KNTVIVLYFF-AKWCQACTMQSTEMDKLQKYYGK-RIYLLKVDLDKNESLARKFSVKSLPTIILLKNKTML  109 (128)
T ss_dssp             CCSEEEEEEE-CTTCHHHHHHHHHHHHHHHHHGG-GEEEEEEEGGGCHHHHHHTTCCSSSEEEEEETTEEE
T ss_pred             cCCEEEEEEE-CCCCHHHHHHhHHHHHHHHHhcC-CeEEEEEECCCCHHHHHHcCCCCcCEEEEEECCEEE
Confidence            4555555555 78999999999999888877763 588888887655443444543556655555544433

>1dby_A Chloroplast thioredoxin M CH2; thioredoxin CH2, chloroplastic thioredoxin, oxidoreductase; NMR {Chlamydomonas reinhardtii} SCOP: c.47.1.1

Probab=96.62  E-value=0.0046  Score=48.26  Aligned_cols=62  Identities=13%  Similarity=0.169  Sum_probs=40.6

Q ss_pred             CCCEEEEeecCCCCcchHHHHHHHHhccchhhhcCCeEEEEecCChhhHHhhhcCCCCCceeEe
Q 015842          229 ESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLHEYIESEVKDFWPRYWGGVVVY  292 (399)
Q Consensus       229 ~~pvVLvFyRg~gCP~Cr~el~~L~e~~pef~alGV~LVaIspE~~e~~ik~F~~~~l~f~VLs  292 (399)
                      ++++||.|+ ..|||.|+.....|.++..++.. .+.++.|..+......+.|.-..+|--++.
T Consensus        19 ~~~~lv~f~-~~~C~~C~~~~~~l~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~   80 (107)
T 1dby_A           19 SVPVLVDFW-APWCGPCRIIAPVVDEIAGEYKD-KLKCVKLNTDESPNVASEYGIRSIPTIMVF   80 (107)
T ss_dssp             SSCEEEEEE-CTTCHHHHHHHHHHHHHHHHTTT-TCEEEEEETTTCHHHHHHHTCCSSCEEEEE
T ss_pred             CCcEEEEEE-CCCCHhHHHHHHHHHHHHHHhCC-ceEEEEEECCCCHHHHHHCCCCcCCEEEEE
Confidence            456665555 69999999999999887766654 488888886654433444543455543333

>2yj7_A LPBCA thioredoxin; oxidoreductase; 1.65A {Synthetic construct}

Probab=95.60  E-value=0.00035  Score=54.00  Aligned_cols=43  Identities=16%  Similarity=0.260  Sum_probs=31.1

Q ss_pred             CCCEEEEeecCCCCcchHHHHHHHHhccchhhhcCCeEEEEecCC
Q 015842          229 ESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLHEY  273 (399)
Q Consensus       229 ~~pvVLvFyRg~gCP~Cr~el~~L~e~~pef~alGV~LVaIspE~  273 (399)
                      ++++||.|+ ..|||+|+.....|.+...++.. ++.++.|..+.
T Consensus        19 ~~~~~v~f~-~~~C~~C~~~~~~~~~~~~~~~~-~~~~~~v~~~~   61 (106)
T 2yj7_A           19 DKPVLVDFW-APWCGPCRMIAPIIEELAKEYEG-KVKVVKVNVDE   61 (106)
Confidence            455555555 89999999999988887777654 46777666543

>3gnj_A Thioredoxin domain protein; APC92103, STR genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; 1.99A {Desulfitobacterium hafniense dcb-2} SCOP: c.47.1.0

Probab=96.56  E-value=0.0039  Score=48.90  Aligned_cols=67  Identities=12%  Similarity=0.225  Sum_probs=44.4

Q ss_pred             cCCCEEEEeecCCCCcchHHHHHHHHhccchhhhcCCeEEEEecCChhhHHhhhcCCCCCceeEeccch
Q 015842          228 RESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLHEYIESEVKDFWPRYWGGVVVYDQGM  296 (399)
Q Consensus       228 ~~~pvVLvFyRg~gCP~Cr~el~~L~e~~pef~alGV~LVaIspE~~e~~ik~F~~~~l~f~VLsDp~r  296 (399)
                      +++++||.|+ ..||+.|+.....|.+...++.. .+.++.|-.+......+.|.-..+|--++...++
T Consensus        21 ~~~~vlv~f~-a~~C~~C~~~~~~~~~~~~~~~~-~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~~g~   87 (111)
T 3gnj_A           21 EGKACLVMFS-RKNCHVCQKVTPVLEELRLNYEE-SFGFYYVDVEEEKTLFQRFSLKGVPQILYFKDGE   87 (111)
T ss_dssp             SCCCEEEEEE-CSSCHHHHHHHHHHHHHHHHTTT-TSEEEEEETTTCHHHHHHTTCCSSCEEEEEETTE
T ss_pred             cCCEEEEEEe-CCCChhHHHHHHHHHHHHHHcCC-ceEEEEEECCcChhHHHhcCCCcCCEEEEEECCE
Confidence            3456666665 68999999999888887766653 4888888876654434445434556555554443

>2xc2_A Thioredoxinn; oxidoreductase, protein disulfide reductase; 1.56A {Schistosoma mansoni} PDB: 2xbq_A 2xbi_A

Probab=96.55  E-value=0.0041  Score=49.82  Aligned_cols=57  Identities=11%  Similarity=0.089  Sum_probs=39.8

Q ss_pred             cCCCEEEEeecCCCCcchHHHHHHHHhccchhhhcCCeEEEEecCChhhHHhhhcCCCCCc
Q 015842          228 RESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLHEYIESEVKDFWPRYWGG  288 (399)
Q Consensus       228 ~~~pvVLvFyRg~gCP~Cr~el~~L~e~~pef~alGV~LVaIspE~~e~~ik~F~~~~l~f  288 (399)
                      +++++||.|+ ..|||.|+.....|.++..++   ++.++.|..+......+.|.-..+|-
T Consensus        32 ~~~~~vv~f~-a~wC~~C~~~~~~~~~~~~~~---~~~~~~vd~~~~~~~~~~~~v~~~Pt   88 (117)
T 2xc2_A           32 KNKLVVVDFF-ATWCGPCKTIAPLFKELSEKY---DAIFVKVDVDKLEETARKYNISAMPT   88 (117)
T ss_dssp             TTSCEEEEEE-CTTCHHHHHHHHHHHHHHTTS---SSEEEEEETTTSHHHHHHTTCCSSSE
T ss_pred             CCCEEEEEEE-CCCCHhHHHHhHHHHHHHHHc---CcEEEEEECCccHHHHHHcCCCccce
Confidence            3456666655 589999999999998877666   78999888765544344454345554

>1ti3_A Thioredoxin H, PTTRXH1; oxidoreductase; NMR {Populus tremula} SCOP: c.47.1.1

Probab=96.55  E-value=0.004  Score=48.99  Aligned_cols=64  Identities=9%  Similarity=0.168  Sum_probs=41.5

Q ss_pred             CCEEEEeecCCCCcchHHHHHHHHhccchhhhcCCeEEEEecCChhhHHhhhcCCCCCceeEeccc
Q 015842          230 SPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLHEYIESEVKDFWPRYWGGVVVYDQG  295 (399)
Q Consensus       230 ~pvVLvFyRg~gCP~Cr~el~~L~e~~pef~alGV~LVaIspE~~e~~ik~F~~~~l~f~VLsDp~  295 (399)
                      +..+|++|-..|||+|+.....|.+...++.  ++.++.|..+......+.|.-..+|.-++...+
T Consensus        26 ~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~--~v~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~G   89 (113)
T 1ti3_A           26 QKLIVVDFTASWCPPCKMIAPIFAELAKKFP--NVTFLKVDVDELKAVAEEWNVEAMPTFIFLKDG   89 (113)
T ss_dssp             SSEEEEEEECSSCHHHHHHHHHHHHHHHHCS--SEEEEEEETTTCHHHHHHHHCSSTTEEEEEETT
T ss_pred             CCeEEEEEECCCCHHHHHHHHHHHHHHHhCC--CcEEEEEEccccHHHHHhCCCCcccEEEEEeCC
Confidence            4445555556899999999988887766654  688888887654443455543455544444333

>2trx_A Thioredoxin; electron transport; 1.68A {Escherichia coli} SCOP: c.47.1.1 PDB: 1skr_B* 1skw_B* 1sl0_B* 1sks_B* 1sl2_B* 1t7p_B* 1t8e_B* 1tk0_B* 1tk5_B* 1tk8_B* 1tkd_B* 1sl1_B* 1x9s_B* 1x9w_B* 1xoa_A 1xob_A 1zyq_B* 2ajq_B* 2bto_T* 2h6x_A ...

Probab=96.54  E-value=0.0049  Score=48.18  Aligned_cols=64  Identities=11%  Similarity=0.113  Sum_probs=40.6

Q ss_pred             cCCCEEEEeecCCCCcchHHHHHHHHhccchhhhcCCeEEEEecCChhhHHhhhcCCCCCceeEe
Q 015842          228 RESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLHEYIESEVKDFWPRYWGGVVVY  292 (399)
Q Consensus       228 ~~~pvVLvFyRg~gCP~Cr~el~~L~e~~pef~alGV~LVaIspE~~e~~ik~F~~~~l~f~VLs  292 (399)
                      +.++.+|++|-..|||.|+.....|.+...++.. .+.++.|..+......+.|.-..+|--++.
T Consensus        18 ~~~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~   81 (108)
T 2trx_A           18 KADGAILVDFWAEWCGPCKMIAPILDEIADEYQG-KLTVAKLNIDQNPGTAPKYGIRGIPTLLLF   81 (108)
T ss_dssp             TCSSEEEEEEECTTCHHHHHHHHHHHHHHHHTTT-TEEEEEEETTTCTTHHHHTTCCSSSEEEEE
T ss_pred             hcCCeEEEEEECCCCHhHHHHHHHHHHHHHHhCC-CcEEEEEECCCCHHHHHHcCCcccCEEEEE
Confidence            3444444555579999999999998887666643 478888876544333444543455544444

>2i1u_A Thioredoxin, TRX, MPT46; redox protein, electron transport; 1.30A {Mycobacterium tuberculosis} PDB: 3nof_A 3o6t_A* 2l4q_A 2l59_A

Probab=96.50  E-value=0.0054  Score=48.94  Aligned_cols=63  Identities=10%  Similarity=0.094  Sum_probs=42.0

Q ss_pred             CCCEEEEeecCCCCcchHHHHHHHHhccchhhhcCCeEEEEecCChhhHHhhhcCCCCCceeEec
Q 015842          229 ESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLHEYIESEVKDFWPRYWGGVVVYD  293 (399)
Q Consensus       229 ~~pvVLvFyRg~gCP~Cr~el~~L~e~~pef~alGV~LVaIspE~~e~~ik~F~~~~l~f~VLsD  293 (399)
                      ++++||.|+ ..|||.|+.....|.++..++.. ++.++.|..+......+.|.-..+|--++.+
T Consensus        30 ~~~~lv~f~-~~~C~~C~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~   92 (121)
T 2i1u_A           30 NKPVLVDFW-ATWCGPCKMVAPVLEEIATERAT-DLTVAKLDVDTNPETARNFQVVSIPTLILFK   92 (121)
T ss_dssp             SSCEEEEEE-CTTCHHHHHHHHHHHHHHHHTTT-TCEEEEEETTTCHHHHHHTTCCSSSEEEEEE
T ss_pred             CCcEEEEEE-CCCCHHHHHHHHHHHHHHHHhcC-CeEEEEEECCCCHHHHHhcCCCcCCEEEEEE
Confidence            456665555 58999999999999887766644 5888888876544434445434555444444

>2dj3_A Protein disulfide-isomerase A4; protein ERP-72, ERP72, CAI, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=96.35  E-value=0.0029  Score=51.64  Aligned_cols=68  Identities=6%  Similarity=0.056  Sum_probs=43.2

Q ss_pred             CCCEEEEeecCCCCcchHHHHHHHHhccchhhhc-CCeEEEEecCChhhHHhhhcCCCCCceeEeccchH
Q 015842          229 ESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDAL-GIQLFAVLHEYIESEVKDFWPRYWGGVVVYDQGME  297 (399)
Q Consensus       229 ~~pvVLvFyRg~gCP~Cr~el~~L~e~~pef~al-GV~LVaIspE~~e~~ik~F~~~~l~f~VLsDp~r~  297 (399)
                      ++++||. |-..||+.|+.....|.++..++... ++.++.|-.+......+.|.-..+|--++.|.+..
T Consensus        25 ~~~vlv~-f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~~   93 (133)
T 2dj3_A           25 KKDVLIE-FYAPWCGHCKQLEPIYTSLGKKYKGQKDLVIAKMDATANDITNDQYKVEGFPTIYFAPSGDK   93 (133)
T ss_dssp             TSEEEEE-ECCTTCSHHHHHHHHHHHHHHHHTTSSSEEEEEECTTTSCCCCSSCCCSSSSEEEEECTTCT
T ss_pred             CCcEEEE-EECCCChhHHHHHHHHHHHHHHhcCCCCEEEEEecCCcCHHHHhhcCCCcCCEEEEEeCCCc
Confidence            4455555 45789999999999998887777642 46666665443322122343356676677787654

>3idv_A Protein disulfide-isomerase A4; thioredoxin-like fold, disulfide bond, endoplasmic reticulum isomerase, redox-active center; 1.95A {Homo sapiens} PDB: 2dj2_A

Probab=96.33  E-value=0.0064  Score=54.39  Aligned_cols=72  Identities=15%  Similarity=0.143  Sum_probs=49.6

Q ss_pred             hhhccCCCEEEEeecCCCCcchHHHHHHHHhccchhhhcC--CeEEEEecCChhhHHhhhcCCCCCceeEeccc
Q 015842          224 LELWRESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALG--IQLFAVLHEYIESEVKDFWPRYWGGVVVYDQG  295 (399)
Q Consensus       224 sdL~~~~pvVLvFyRg~gCP~Cr~el~~L~e~~pef~alG--V~LVaIspE~~e~~ik~F~~~~l~f~VLsDp~  295 (399)
                      .++..+++.+++.|-..||+.|+.....|.++..++...+  +.++.|-.+......+.|.-..+|--++.+.+
T Consensus        26 ~~~~~~~~~v~v~F~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~~g   99 (241)
T 3idv_A           26 DNFVADKDTVLLEFYAPWCGHCKQFAPEYEKIANILKDKDPPIPVAKIDATSASVLASRFDVSGYPTIKILKKG   99 (241)
T ss_dssp             HHHHTTCSEEEEEEECTTCHHHHHHHHHHHHHHHHHHTSSSCCCEEEEETTTCHHHHHHTTCCSSSEEEEEETT
T ss_pred             HHHHhcCCeEEEEEECCCCHHHHHhhHHHHHHHHHHhhcCCceEEEEEeccCCHHHHHhcCCCcCCEEEEEcCC
Confidence            3445555555555567899999999999999988888766  88888877655444455554556655554443

>1gh2_A Thioredoxin-like protein; redox-active center, electron transport; 2.22A {Homo sapiens} SCOP: c.47.1.1

Probab=96.33  E-value=0.0069  Score=47.62  Aligned_cols=62  Identities=11%  Similarity=0.006  Sum_probs=40.2

Q ss_pred             CCCEEEEeecCCCCcchHHHHHHHHhccchhhhcCCeEEEEecCChhhHHhhhcCCCCCceeEec
Q 015842          229 ESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLHEYIESEVKDFWPRYWGGVVVYD  293 (399)
Q Consensus       229 ~~pvVLvFyRg~gCP~Cr~el~~L~e~~pef~alGV~LVaIspE~~e~~ik~F~~~~l~f~VLsD  293 (399)
                      ++++||.| -..||+.|+.....|.++..++  .++.++.|-.+......+.|.-..+|--++..
T Consensus        21 ~~~v~v~f-~a~wC~~C~~~~~~~~~~~~~~--~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~   82 (107)
T 1gh2_A           21 SRLAVVKF-TMRGCGPCLRIAPAFSSMSNKY--PQAVFLEVDVHQCQGTAATNNISATPTFQFFR   82 (107)
T ss_dssp             TSCEEEEE-ECSSCHHHHHHHHHHHHHHHHC--TTSEEEEEETTTSHHHHHHTTCCSSSEEEEEE
T ss_pred             CCEEEEEE-ECCCChhhHHHHHHHHHHHHHC--CCcEEEEEECccCHHHHHhcCCCcccEEEEEE
Confidence            45555554 5689999999998888776666  36888888776544334445434555444443

>1x5e_A Thioredoxin domain containing protein 1; TMX, TXNDC1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=96.29  E-value=0.0069  Score=49.15  Aligned_cols=67  Identities=12%  Similarity=0.014  Sum_probs=45.7

Q ss_pred             hhhccCCCEEEEeecCCCCcchHHHHHHHHhccchhhhcCCeEEEEecCChhhHHhhhcCCCCCceeEe
Q 015842          224 LELWRESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLHEYIESEVKDFWPRYWGGVVVY  292 (399)
Q Consensus       224 sdL~~~~pvVLvFyRg~gCP~Cr~el~~L~e~~pef~alGV~LVaIspE~~e~~ik~F~~~~l~f~VLs  292 (399)
                      .+++++ ++| +.|-..||+.|+.....|.++..++...++.++.|-.+......+.|.-..+|--++.
T Consensus        18 ~~~~~~-~vl-v~f~a~wC~~C~~~~p~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~v~~~Pt~~~~   84 (126)
T 1x5e_A           18 RELLEG-DWM-IEFYAPWCPACQNLQPEWESFAEWGEDLEVNIAKVDVTEQPGLSGRFIINALPTIYHC   84 (126)
T ss_dssp             HHHTSS-EEE-EEEECSSCHHHHHHHHHHHHHHHHHGGGTCEEEEEETTTCHHHHHHTTCCSSSEEEEE
T ss_pred             HHHhCC-CEE-EEEECCCCHHHHHHhHHHHHHHHHhccCCeEEEEEECcCCHHHHHHcCCcccCEEEEE
Confidence            344443 555 4555689999999999998887777766899999976655443445543455655554

>2wz9_A Glutaredoxin-3; protein binding; 1.55A {Homo sapiens} PDB: 2diy_A

Probab=96.25  E-value=0.0049  Score=52.47  Aligned_cols=65  Identities=8%  Similarity=0.024  Sum_probs=45.1

Q ss_pred             CCCEEEEeecCCCCcchHHHHHHHHhccchhhhcCCeEEEEecCChhhHHhhhcCCCCCceeEeccch
Q 015842          229 ESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLHEYIESEVKDFWPRYWGGVVVYDQGM  296 (399)
Q Consensus       229 ~~pvVLvFyRg~gCP~Cr~el~~L~e~~pef~alGV~LVaIspE~~e~~ik~F~~~~l~f~VLsDp~r  296 (399)
                      ++++||.|+ ..||+.|+.....|.++..++  .++.++.|-.+......+.|.-..+|.-++.|.++
T Consensus        32 ~~~vvv~F~-a~wC~~C~~~~p~l~~l~~~~--~~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~~G~   96 (153)
T 2wz9_A           32 KSLLVVHFW-APWAPQCAQMNEVMAELAKEL--PQVSFVKLEAEGVPEVSEKYEISSVPTFLFFKNSQ   96 (153)
T ss_dssp             TSCEEEEEE-CTTCHHHHHHHHHHHHHHHHC--TTSEEEEEETTTSHHHHHHTTCCSSSEEEEEETTE
T ss_pred             CCeEEEEEE-CCCCHhHHHHHHHHHHHHHHc--CCeEEEEEECCCCHHHHHHcCCCCCCEEEEEECCE
Confidence            456666655 789999999998888776655  36899998876554434455445677777777443

>2lst_A Thioredoxin; structural genomics, NEW YORK structural genomics research consortium, oxidoreductase; NMR {Thermus thermophilus}

Probab=95.23  E-value=0.00074  Score=55.18  Aligned_cols=75  Identities=7%  Similarity=0.023  Sum_probs=43.0

Q ss_pred             CCceechhhccCCCEEEEeecCCCCcchHHHHHHH---HhccchhhhcCCeEEEEecCCh--hhHHhhhcCCCCCceeEe
Q 015842          218 TPPMKALELWRESPAVLLCIRRPGCIMCRAEAHQL---YAKKPIFDALGIQLFAVLHEYI--ESEVKDFWPRYWGGVVVY  292 (399)
Q Consensus       218 G~~VsLsdL~~~~pvVLvFyRg~gCP~Cr~el~~L---~e~~pef~alGV~LVaIspE~~--e~~ik~F~~~~l~f~VLs  292 (399)
                      .+.+.+.. .+++++||.|+ ..|||+|+.....|   .++...+.. ++.++.|-.+..  ....+.|.-..+|.-++.
T Consensus         9 ~~~~~~~~-~~~k~vlv~f~-a~wC~~C~~~~~~~~~~~~~~~~~~~-~~~~~~vd~~~~~~~~~~~~~~v~~~Pt~~~~   85 (130)
T 2lst_A            9 PEALALAQ-AHGRMVMVYFH-SEHCPYCQQMNTFVLSDPGVSRLLEA-RFVVASVSVDTPEGQELARRYRVPGTPTFVFL   85 (130)
Confidence            33444443 24556666655 88999999988777   554444433 466666654321  111233333556777788


Q ss_pred             ccc
Q 015842          293 DQG  295 (399)
Q Consensus       293 Dp~  295 (399)
                      |++
T Consensus        86 d~~   88 (130)
T 2lst_A           86 VPK   88 (130)
Confidence            753

>1wmj_A Thioredoxin H-type; structural genomics, program for RICE genome research, oxidoreductase; NMR {Oryza sativa}

Probab=96.17  E-value=0.0012  Score=53.47  Aligned_cols=60  Identities=12%  Similarity=0.091  Sum_probs=39.8

Q ss_pred             CCCEEEEeecCCCCcchHHHHHHHHhccchhhhcCCeEEEEecCChhhHHhhhcCCCCCceeE
Q 015842          229 ESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLHEYIESEVKDFWPRYWGGVVV  291 (399)
Q Consensus       229 ~~pvVLvFyRg~gCP~Cr~el~~L~e~~pef~alGV~LVaIspE~~e~~ik~F~~~~l~f~VL  291 (399)
                      ++++||.|+ ..|||.|+.....|.+...++.  ++.++.|-.+......+.|.-..+|.-++
T Consensus        36 ~~~~vv~f~-~~~C~~C~~~~~~l~~~~~~~~--~v~~~~v~~~~~~~~~~~~~v~~~Pt~~~   95 (130)
T 1wmj_A           36 GKVVIIDFT-ASWCGPCRFIAPVFAEYAKKFP--GAVFLKVDVDELKEVAEKYNVEAMPTFLF   95 (130)
T ss_dssp             TCBCBEECC-SSSCSCSSSSHHHHHHHHHHCT--TBCCEECCTTTSGGGHHHHTCCSSCCCCB
T ss_pred             CCEEEEEEE-CCCChhHHHHHHHHHHHHHHCC--CCEEEEEeccchHHHHHHcCCCccceEEE
Confidence            556666655 7999999999888887766664  68888887665443344454344554333

>2l6c_A Thioredoxin; oxidoreductase; NMR {Desulfovibrio vulgaris} PDB: 2l6d_A

Probab=96.17  E-value=0.011  Score=47.20  Aligned_cols=69  Identities=14%  Similarity=0.066  Sum_probs=43.4

Q ss_pred             hhhccCCCEEEEeecCCCCcchHHHHHHHHhccchhhhcCCeEEEEecCChhhHHhhhcCCCCCceeEeccc
Q 015842          224 LELWRESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLHEYIESEVKDFWPRYWGGVVVYDQG  295 (399)
Q Consensus       224 sdL~~~~pvVLvFyRg~gCP~Cr~el~~L~e~~pef~alGV~LVaIspE~~e~~ik~F~~~~l~f~VLsDp~  295 (399)
                      ..+.+++++||.|+ ..|||.|+.....|.++..++.  ++.++.|-.+......+.|.-..+|.-++...+
T Consensus        14 ~~~~~~~~~vv~f~-a~wC~~C~~~~~~l~~~~~~~~--~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~~G   82 (110)
T 2l6c_A           14 AHFEGLSDAIVFFH-KNLCPHCKNMEKVLDKFGARAP--QVAISSVDSEARPELMKELGFERVPTLVFIRDG   82 (110)
T ss_dssp             HHHTTCSEEEEEEE-CSSCSTHHHHHHHHHHHHTTCT--TSCEEEEEGGGCHHHHHHTTCCSSCEEEEEESS
T ss_pred             HHHHcCCCEEEEEE-CCCCHhHHHHHHHHHHHHHHCC--CcEEEEEcCcCCHHHHHHcCCcccCEEEEEECC
Confidence            44444556665555 6899999999988887766654  678888876544333344543455655554333

>2djj_A PDI, protein disulfide-isomerase; thioredoxin fold; NMR {Humicola insolens} SCOP: c.47.1.2 PDB: 2kp1_A

Probab=96.17  E-value=0.0057  Score=48.91  Aligned_cols=43  Identities=14%  Similarity=0.184  Sum_probs=31.4

Q ss_pred             cCCCEEEEeecCCCCcchHHHHHHHHhccchhhhc----CCeEEEEec
Q 015842          228 RESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDAL----GIQLFAVLH  271 (399)
Q Consensus       228 ~~~pvVLvFyRg~gCP~Cr~el~~L~e~~pef~al----GV~LVaIsp  271 (399)
                      +++++||.|| ..||+.|+.....|.++..++...    ++.++.|-.
T Consensus        24 ~~~~vlv~f~-a~wC~~C~~~~p~~~~~~~~~~~~~~~~~v~~~~vd~   70 (121)
T 2djj_A           24 DTKDVLIEFY-APWCGHCKALAPKYEELGALYAKSEFKDRVVIAKVDA   70 (121)
T ss_dssp             TTSCEEEEEE-CSSCTTHHHHHHHHHHHHHHHTTSSCTTSSEEEEEET
T ss_pred             CCCCEEEEEE-CCCCHhHHHhhHHHHHHHHHHhhcccCCceEEEEEEC
Confidence            4556666666 579999999999998887777652    566666654

>3zzx_A Thioredoxin; oxidoreductase; 1.88A {Litopenaeus vannamei}

Probab=96.14  E-value=0.045  Score=44.32  Aligned_cols=85  Identities=11%  Similarity=0.060  Sum_probs=51.8

Q ss_pred             CCCEEEEeecCCCCcchHHHHHHHHhccchhhhcCCeEEEEecCChhhHHhhhcCCCCCceeEeccchHHHHHhCCCccc
Q 015842          229 ESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLHEYIESEVKDFWPRYWGGVVVYDQGMEFFKALGGGKLL  308 (399)
Q Consensus       229 ~~pvVLvFyRg~gCP~Cr~el~~L~e~~pef~alGV~LVaIspE~~e~~ik~F~~~~l~f~VLsDp~r~lYkaLGl~r~~  308 (399)
                      ++++||.| -..||+.|+.....+.+...++.  ++.++.|-                     .|....+.+.||+..  
T Consensus        20 ~k~vvv~F-~a~wC~~C~~~~p~~~~~~~~~~--~~~~~~vd---------------------~d~~~~l~~~~~V~~--   73 (105)
T 3zzx_A           20 NKLVVIDF-YATWCGPCKMIAPKLEELSQSMS--DVVFLKVD---------------------VDECEDIAQDNQIAC--   73 (105)
T ss_dssp             TSEEEEEE-ECTTCHHHHHHHHHHHHHHHHCT--TEEEEEEE---------------------TTTCHHHHHHTTCCB--
T ss_pred             CCEEEEEE-ECCCCCCccCCCcchhhhhhccC--CeEEEEEe---------------------cccCHHHHHHcCCCe--
Confidence            34455555 56899999988887776544332  23333222                     244556777777641  


Q ss_pred             ccccccccccCHHHHHHHHHHHhcCCccccCCCCcccceEEEEecCCCcEEEEEecCCCCCCCCHHHHHHHHHhh
Q 015842          309 KDKFLSGFLLNPRAIANYKRARTLGVEQNFKGEGEIKGGLFIVGRGRSGIAYQFIERNFGDWAPLAEVIEICTQL  383 (399)
Q Consensus       309 r~s~lsgfl~~P~v~~~~~rA~~~G~~gn~~GD~~qLGGtFVId~gGg~I~yah~d~d~gDrad~eeVLaAl~~l  383 (399)
                                                          +| ||++-++| .+...+.+.      +.++|.+.+++.
T Consensus        74 ------------------------------------~P-T~~~~~~G-~~v~~~~G~------~~~~l~~~i~k~  104 (105)
T 3zzx_A           74 ------------------------------------MP-TFLFMKNG-QKLDSLSGA------NYDKLLELVEKN  104 (105)
T ss_dssp             ------------------------------------SS-EEEEEETT-EEEEEEESC------CHHHHHHHHHHH
T ss_pred             ------------------------------------ec-EEEEEECC-EEEEEEeCc------CHHHHHHHHHhc
Confidence                                                35 55555675 777777663      567888777653

>1mek_A Protein disulfide isomerase; electron transport, redox-active center, endoplasmic reticulum; NMR {Homo sapiens} SCOP: c.47.1.2

Probab=96.13  E-value=0.0025  Score=50.31  Aligned_cols=71  Identities=18%  Similarity=0.175  Sum_probs=43.1

Q ss_pred             hhccCCCEEEEeecCCCCcchHHHHHHHHhccchhhhc--CCeEEEEecCChhhHHhhhcCCCCCceeEeccc
Q 015842          225 ELWRESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDAL--GIQLFAVLHEYIESEVKDFWPRYWGGVVVYDQG  295 (399)
Q Consensus       225 dL~~~~pvVLvFyRg~gCP~Cr~el~~L~e~~pef~al--GV~LVaIspE~~e~~ik~F~~~~l~f~VLsDp~  295 (399)
                      ++.++++.+|++|-..|||.|+.....|.+...++...  ++.++.|-.+......+.|.-..+|--++...+
T Consensus        19 ~~~~~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g   91 (120)
T 1mek_A           19 EALAAHKYLLVEFYAPWCGHCKALAPEYAKAAGKLKAEGSEIRLAKVDATEESDLAQQYGVRGYPTIKFFRNG   91 (120)
T ss_dssp             HHHHHCSEEEEEEECSSCSTTSTTHHHHHHHHHTTTTTCCCCBCEEEETTTCCSSHHHHTCCSSSEEEEEESS
T ss_pred             HHHccCCeEEEEEECCCCHHHHHhhHHHHHHHHHHhccCCcEEEEEEcCCCCHHHHHHCCCCcccEEEEEeCC
Confidence            34444445555556789999999999998877777654  466666654433222344543455555544443

>3p2a_A Thioredoxin 2, putative thioredoxin-like protein; structural genomics, center for structural genomics of infec diseases, csgid; 2.19A {Yersinia pestis}

Probab=96.08  E-value=0.0097  Score=49.85  Aligned_cols=68  Identities=19%  Similarity=0.202  Sum_probs=45.6

Q ss_pred             cCCCEEEEeecCCCCcchHHHHHHHHhccchhhhcCCeEEEEecCChhhHHhhhcCCCCCceeEeccchH
Q 015842          228 RESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLHEYIESEVKDFWPRYWGGVVVYDQGME  297 (399)
Q Consensus       228 ~~~pvVLvFyRg~gCP~Cr~el~~L~e~~pef~alGV~LVaIspE~~e~~ik~F~~~~l~f~VLsDp~r~  297 (399)
                      .++++||.|| ..||+.|+.....|.++..++.. .+.++.|-.+......+.|.-..+|--++.+.++.
T Consensus        54 ~~k~vlv~F~-a~wC~~C~~~~p~l~~~~~~~~~-~~~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~~G~~  121 (148)
T 3p2a_A           54 DDLPMVIDFW-APWCGPCRSFAPIFAETAAERAG-KVRFVKVNTEAEPALSTRFRIRSIPTIMLYRNGKM  121 (148)
T ss_dssp             CSSCEEEEEE-CSSCHHHHHHHHHHHHHHHHTTT-TCEEEEEETTTCHHHHHHTTCCSSSEEEEEETTEE
T ss_pred             cCCcEEEEEE-CCCCHHHHHHHHHHHHHHHHcCC-ceEEEEEECcCCHHHHHHCCCCccCEEEEEECCeE
Confidence            3455665555 88999999999999888777654 48888887766554445554455665555554443

>2o8v_B Thioredoxin 1; disulfide crosslinked complex, oxidoreductase; 3.00A {Escherichia coli}

Probab=96.05  E-value=0.0071  Score=50.10  Aligned_cols=64  Identities=9%  Similarity=0.055  Sum_probs=41.8

Q ss_pred             cCCCEEEEeecCCCCcchHHHHHHHHhccchhhhcCCeEEEEecCChhhHHhhhcCCCCCceeEe
Q 015842          228 RESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLHEYIESEVKDFWPRYWGGVVVY  292 (399)
Q Consensus       228 ~~~pvVLvFyRg~gCP~Cr~el~~L~e~~pef~alGV~LVaIspE~~e~~ik~F~~~~l~f~VLs  292 (399)
                      +.++.+|++|-..||+.|+.....|.++..++.. ++.++.|..+......+.|.-..+|.-++.
T Consensus        38 ~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~-~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~~  101 (128)
T 2o8v_B           38 KADGAILVDFWAEWCGPAKMIAPILDEIADEYQG-KLTVAKLNIDQNPGTAPKYGIRGIPTLLLF  101 (128)
T ss_dssp             TCSSEEEEEEECSSCHHHHHTHHHHHHHHHHTTT-TEEEEEEETTTCCTTSGGGTCCSSSEEEEE
T ss_pred             hcCCEEEEEEECCCCHHHHHHhHHHHHHHHHhcC-CeEEEEEECCCCHHHHHHcCCCccCEEEEE
Confidence            4455566666688999999999988887766654 478888876544332344433455554444

>2ppt_A Thioredoxin-2; thiredoxin, zinc finger, oxidoreductase; 1.92A {Rhodobacter capsulatus}

Probab=96.03  E-value=0.014  Score=50.13  Aligned_cols=72  Identities=15%  Similarity=0.170  Sum_probs=48.3

Q ss_pred             chhhcc-CCCEEEEeecCCCCcchHHHHHHHHhccchhhhcCCeEEEEecCChhhHHhhhcCCCCCceeEeccch
Q 015842          223 ALELWR-ESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLHEYIESEVKDFWPRYWGGVVVYDQGM  296 (399)
Q Consensus       223 LsdL~~-~~pvVLvFyRg~gCP~Cr~el~~L~e~~pef~alGV~LVaIspE~~e~~ik~F~~~~l~f~VLsDp~r  296 (399)
                      +.++.+ ++++||.|| ..||+.|+.....|.++..++.. .+.++.|-.+......+.|.-..+|.-++...++
T Consensus        57 f~~~~~~~~~vlv~F~-a~wC~~C~~~~p~l~~la~~~~~-~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~G~  129 (155)
T 2ppt_A           57 LARAERDDLPLLVDFW-APWCGPCRQMAPQFQAAAATLAG-QVRLAKIDTQAHPAVAGRHRIQGIPAFILFHKGR  129 (155)
T ss_dssp             HHHHTTCSSCEEEEEE-CTTCHHHHHHHHHHHHHHHHHTT-TCEEEEEETTTSTHHHHHTTCCSSSEEEEEETTE
T ss_pred             HHHHHhCCCcEEEEEE-CCCCHHHHHHHHHHHHHHHHccC-CEEEEEEeCCccHHHHHHcCCCcCCEEEEEeCCe
Confidence            444443 457777776 88999999999999888777764 4888888876544434445435566555544333

>1r26_A Thioredoxin; redox-active disulfide, electron transport; 1.40A {Trypanosoma} SCOP: c.47.1.1

Probab=96.00  E-value=0.0073  Score=50.03  Aligned_cols=61  Identities=11%  Similarity=0.000  Sum_probs=39.1

Q ss_pred             hhccC-CCEEEEeecCCCCcchHHHHHHHHhccchhhhcCCeEEEEecCChhhHHhhhcCCCCCc
Q 015842          225 ELWRE-SPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLHEYIESEVKDFWPRYWGG  288 (399)
Q Consensus       225 dL~~~-~pvVLvFyRg~gCP~Cr~el~~L~e~~pef~alGV~LVaIspE~~e~~ik~F~~~~l~f  288 (399)
                      ++++. +++||.|| ..||+.|+.....|.++..++  .++.++.|-.+......+.|.-..+|-
T Consensus        32 ~~~~~~k~vvv~F~-a~wC~~C~~~~p~l~~l~~~~--~~v~~~~vd~d~~~~l~~~~~v~~~Pt   93 (125)
T 1r26_A           32 NIMSEDILTVAWFT-AVWCGPCKTIERPMEKIAYEF--PTVKFAKVDADNNSEIVSKCRVLQLPT   93 (125)
T ss_dssp             HHHHSSSCEEEEEE-CTTCHHHHHTHHHHHHHHHHC--TTSEEEEEETTTCHHHHHHTTCCSSSE
T ss_pred             HHHccCCEEEEEEE-CCcCHhHHHHHHHHHHHHHHC--CCCEEEEEECCCCHHHHHHcCCCcccE
Confidence            33344 45565555 789999999999988876666  368888887665433233343234443

>1wou_A Thioredoxin -related protein, 14 kDa; electron transport; 1.80A {Homo sapiens} SCOP: c.47.1.16 PDB: 1v9w_A

Probab=95.94  E-value=0.012  Score=48.05  Aligned_cols=42  Identities=7%  Similarity=0.003  Sum_probs=30.9

Q ss_pred             CCCEEEEeecCC-------CCcchHHHHHHHHhccchhhhcCCeEEEEecC
Q 015842          229 ESPAVLLCIRRP-------GCIMCRAEAHQLYAKKPIFDALGIQLFAVLHE  272 (399)
Q Consensus       229 ~~pvVLvFyRg~-------gCP~Cr~el~~L~e~~pef~alGV~LVaIspE  272 (399)
                      ++++||.|+ ..       |||.|+.....|.++..++.. ++.++.|-.+
T Consensus        24 ~~~v~v~F~-a~~~~~~~~wC~~C~~~~p~l~~~~~~~~~-~~~~~~vd~~   72 (123)
T 1wou_A           24 GKTIFAYFT-GSKDAGGKSWCPDCVQAEPVVREGLKHISE-GCVFIYCQVG   72 (123)
T ss_dssp             TSEEEEEEE-CCBCTTCCBSCHHHHHHHHHHHHHGGGCCT-TEEEEEEECC
T ss_pred             CCEEEEEEE-ccCCCCCCCcCHHHHHhhHHHHHHHHHcCC-CcEEEEEECC
Confidence            455555555 55       999999999999887776643 6778777663

>3cxg_A Putative thioredoxin; malaria, structural GEN oxidoreductase, structural genomics consortium, SGC; 2.00A {Plasmodium falciparum}

Probab=95.93  E-value=0.012  Score=49.01  Aligned_cols=59  Identities=7%  Similarity=0.054  Sum_probs=38.8

Q ss_pred             CEEEEeecCCCCcchHHHHHHHHhccchhhhcCCeEEEEecCChhhHHhhhcCCCCCceeEe
Q 015842          231 PAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLHEYIESEVKDFWPRYWGGVVVY  292 (399)
Q Consensus       231 pvVLvFyRg~gCP~Cr~el~~L~e~~pef~alGV~LVaIspE~~e~~ik~F~~~~l~f~VLs  292 (399)
                      +.||+.|-..||+.|+.....|.++..++   ++.++.|-.+......+.|.-..+|.-++.
T Consensus        41 k~vvv~F~a~wC~~C~~~~p~l~~l~~~~---~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~~   99 (133)
T 3cxg_A           41 SSIVIKFGAVWCKPCNKIKEYFKNQLNYY---YVTLVDIDVDIHPKLNDQHNIKALPTFEFY   99 (133)
T ss_dssp             SEEEEEEECTTCHHHHHTHHHHHGGGGTE---ECEEEEEETTTCHHHHHHTTCCSSSEEEEE
T ss_pred             CEEEEEEECCCCHHHHHHHHHHHHHHHhc---CEEEEEEeccchHHHHHhcCCCCCCEEEEE
Confidence            34555555689999999998888876655   577877776554433344543455655544

>3ira_A Conserved protein; methanosarcina mazei,structural genomics, MCSG, protein structure initiative, midwest center for STRU genomics; 2.10A {Methanosarcina mazei}

Probab=95.92  E-value=0.036  Score=49.75  Aligned_cols=42  Identities=14%  Similarity=0.049  Sum_probs=30.8

Q ss_pred             cceEEEEecCCCcEEEEE--e-cCCCCCCCCHHHHHHHHHhhhhhh
Q 015842          345 KGGLFIVGRGRSGIAYQF--I-ERNFGDWAPLAEVIEICTQLQDQQ  387 (399)
Q Consensus       345 LGGtFVId~gGg~I~yah--~-d~d~gDrad~eeVLaAl~~l~~~~  387 (399)
                      .|.+++++++| ++.|..  . ..+..+.+...++|+.+..+-.++
T Consensus       105 ~Pt~v~l~~dG-~~v~~~ty~p~~~~~~~~~f~~~L~~v~~~~~~~  149 (173)
T 3ira_A          105 WPLNIIMTPGK-KPFFAGTYIPKNTRFNQIGMLELVPRIKEIWEQQ  149 (173)
T ss_dssp             SSEEEEECTTS-CEEEEESSCCSSCBTTBCCHHHHHHHHHHHHHHS
T ss_pred             CcceeeECCCC-CceeeeeeCCCCcCCCCCCHHHHHHHHHHHHHHH
Confidence            58899999996 788873  2 334557788899998887765444

>1z6n_A Hypothetical protein PA1234; alpha-beta-alpha sandwich, structura genomics, PSI, protein structure initiative; 1.50A {Pseudomonas aeruginosa} SCOP: c.47.1.1 PDB: 3lef_A

Probab=95.90  E-value=0.0069  Score=53.69  Aligned_cols=67  Identities=16%  Similarity=0.147  Sum_probs=45.1

Q ss_pred             CCEEEEeecCCCCcchHHHHHHHHhccchhhhcCCeEEEEecCChhhHHhhhc---CCCCCceeEeccchHH
Q 015842          230 SPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLHEYIESEVKDFW---PRYWGGVVVYDQGMEF  298 (399)
Q Consensus       230 ~pvVLvFyRg~gCP~Cr~el~~L~e~~pef~alGV~LVaIspE~~e~~ik~F~---~~~l~f~VLsDp~r~l  298 (399)
                      ++++|+.|--.|||.|+.++-.|.++..+..  ++.++.|..+........|.   -..+|--++.|.+.++
T Consensus        54 ~k~vvv~F~A~WC~pC~~~~P~l~~l~~~~~--~v~~~~v~~d~~~~~~~~~~~~~v~~iPt~i~~~~~G~~  123 (167)
T 1z6n_A           54 RRYRLLVAGEMWCPDCQINLAALDFAQRLQP--NIELAIISKGRAEDDLRQRLALERIAIPLVLVLDEEFNL  123 (167)
T ss_dssp             SCEEEEEECCTTCHHHHHHHHHHHHHHHHCT--TEEEEEECHHHHHHHTTTTTTCSSCCSSEEEEECTTCCE
T ss_pred             CCEEEEEEECCCChhHHHHHHHHHHHHHHCC--CcEEEEEECCCCHHHHHHHHHcCCCCcCeEEEECCCCCE
Confidence            4555555678899999999999988765442  57888887544333345565   2456666888887443

>3f9u_A Putative exported cytochrome C biogenesis-related; exported cytochrome C biogenesis-related protein, bacteroide fragilis; 2.20A {Bacteroides fragilis nctc 9343}

Probab=95.82  E-value=0.0066  Score=52.17  Aligned_cols=44  Identities=18%  Similarity=0.363  Sum_probs=26.1

Q ss_pred             cCCCEEEEeecCCCCcchHHHHHHH---HhccchhhhcCCeEEEEecCC
Q 015842          228 RESPAVLLCIRRPGCIMCRAEAHQL---YAKKPIFDALGIQLFAVLHEY  273 (399)
Q Consensus       228 ~~~pvVLvFyRg~gCP~Cr~el~~L---~e~~pef~alGV~LVaIspE~  273 (399)
                      +++++|| .|-..||+.|+.....+   .++...++. ++.+|.|..+.
T Consensus        46 ~gk~vlv-~F~A~WC~~C~~~~~~~~~~~~~~~~~~~-~~~~v~v~~d~   92 (172)
T 3f9u_A           46 HNKPVML-DFTGYGCVNCRKMELAVWTDPKVSSIINN-DYVLITLYVDN   92 (172)
T ss_dssp             TTCCEEE-EEECTTCHHHHHHHHHTTTSHHHHHHHHH-HCEEEEEETTC
T ss_pred             cCCeEEE-EEECCCCHHHHHHHHHhcCCHHHHHHhcC-CEEEEEEecCc
Confidence            3455554 55577999999864333   222223333 67888887544

>1v98_A Thioredoxin; oxidoreductase, structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.82A {Thermus thermophilus}

Probab=95.80  E-value=0.015  Score=48.28  Aligned_cols=64  Identities=13%  Similarity=0.076  Sum_probs=41.7

Q ss_pred             cCCCEEEEeecCCCCcchHHHHHHHHhccchhhhcCCeEEEEecCChhhHHhhhcCCCCCceeEec
Q 015842          228 RESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLHEYIESEVKDFWPRYWGGVVVYD  293 (399)
Q Consensus       228 ~~~pvVLvFyRg~gCP~Cr~el~~L~e~~pef~alGV~LVaIspE~~e~~ik~F~~~~l~f~VLsD  293 (399)
                      +.+++||. |-..|||.|+.....|.++..++.. ++.++.|-.+......+.|.-..+|.-++..
T Consensus        49 ~~~~vvv~-f~~~~C~~C~~~~~~l~~l~~~~~~-~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~  112 (140)
T 1v98_A           49 GAPLTLVD-FFAPWCGPCRLVSPILEELARDHAG-RLKVVKVNVDEHPGLAARYGVRSVPTLVLFR  112 (140)
T ss_dssp             CCCEEEEE-EECTTCHHHHHHHHHHHHHHHHTTT-TEEEEEEETTTCHHHHHHTTCCSSSEEEEEE
T ss_pred             cCCCEEEE-EECCCCHHHHHHHHHHHHHHHHccC-ceEEEEEECCCCHHHHHHCCCCccCEEEEEe
Confidence            33455555 4578999999999999887777654 4888888766544334445434556444443

>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}

Probab=95.69  E-value=0.014  Score=52.79  Aligned_cols=68  Identities=9%  Similarity=0.076  Sum_probs=46.0

Q ss_pred             cCCCEEEEeecCCCCcchHHHHHHHHhccchhhhcCCeEEEEecCChhhHHhhhcCCCCCceeEeccchH
Q 015842          228 RESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLHEYIESEVKDFWPRYWGGVVVYDQGME  297 (399)
Q Consensus       228 ~~~pvVLvFyRg~gCP~Cr~el~~L~e~~pef~alGV~LVaIspE~~e~~ik~F~~~~l~f~VLsDp~r~  297 (399)
                      +++++||.|| ..||+.|+.....|.++..++.. .+.++.|-.+......+.|.-..+|.-++.+.++.
T Consensus        29 ~~k~vvv~F~-a~wC~~C~~~~p~l~~l~~~~~~-~v~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~G~~   96 (222)
T 3dxb_A           29 ADGAILVDFW-AEWCGPCKMIAPILDEIADEYQG-KLTVAKLNIDQNPGTAPKYGIRGIPTLLLFKNGEV   96 (222)
T ss_dssp             CSSCEEEEEE-CTTCHHHHHHHHHHHHHHHHTTT-TCEEEEEETTTCTTTGGGGTCCSBSEEEEEETTEE
T ss_pred             cCCEEEEEEE-CCcCHHHHHHHHHHHHHHHHhcC-CcEEEEEECCCCHHHHHHcCCCcCCEEEEEECCeE
Confidence            3456666665 78999999999999888777754 38888888765544344554356665555554443

>2dj0_A Thioredoxin-related transmembrane protein 2; AVLA237, CGI-31 protein, TXNDC14, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=95.61  E-value=0.0062  Score=50.49  Aligned_cols=68  Identities=9%  Similarity=0.016  Sum_probs=44.5

Q ss_pred             CEEEEeecCCCCcchHHHHHHHHhccchhhhcCCeEEEEecCChhhHHhhhcCC------CCCceeEeccchHHH
Q 015842          231 PAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLHEYIESEVKDFWPR------YWGGVVVYDQGMEFF  299 (399)
Q Consensus       231 pvVLvFyRg~gCP~Cr~el~~L~e~~pef~alGV~LVaIspE~~e~~ik~F~~~------~l~f~VLsDp~r~lY  299 (399)
                      |+||.| -..||+.|+.....|.++..++...++.++.|-.+......+.|.-.      .+|--++...++.+.
T Consensus        28 ~vlv~f-~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~~~~~~~~~~~~v~~~~~~~~~Pt~~~~~~G~~~~  101 (137)
T 2dj0_A           28 TWIVEF-FANWSNDCQSFAPIYADLSLKYNCTGLNFGKVDVGRYTDVSTRYKVSTSPLTKQLPTLILFQGGKEAM  101 (137)
T ss_dssp             CEEEEE-CCTTCSTTTTTHHHHHHHHHHHCSSSCEEEECCTTTCHHHHHHTTCCCCSSSSCSSEEEEESSSSEEE
T ss_pred             EEEEEE-ECCCCHHHHHHHHHHHHHHHHhCCCCeEEEEEeCccCHHHHHHccCcccCCcCCCCEEEEEECCEEEE
Confidence            555555 56899999999999988877776557888888765544334444433      555445554444433

>3h79_A Thioredoxin-like protein; thioredoxin fold, catalytic cysteines missing, unknown funct; 1.50A {Trypanosoma cruzi} SCOP: c.47.1.0

Probab=95.48  E-value=0.035  Score=45.12  Aligned_cols=67  Identities=9%  Similarity=-0.099  Sum_probs=42.5

Q ss_pred             CCCEEEEeecCCCCcchHHHHHHHHhccchhhh----cCCeEEEEecCChhhHHhhhcCCCCCceeEeccch
Q 015842          229 ESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDA----LGIQLFAVLHEYIESEVKDFWPRYWGGVVVYDQGM  296 (399)
Q Consensus       229 ~~pvVLvFyRg~gCP~Cr~el~~L~e~~pef~a----lGV~LVaIspE~~e~~ik~F~~~~l~f~VLsDp~r  296 (399)
                      ++++| +.|-..||+.|+.....+.++..++..    .++.++.|-.+......+.|.-..+|--++.+.+.
T Consensus        33 ~~~vl-v~F~a~wC~~C~~~~p~~~~la~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~~g~  103 (127)
T 3h79_A           33 EKDVF-VLYYVPWSRHSVAAMRLWDDLSMSQSQKRNHLTFVAARIDGEKYPDVIERMRVSGFPTMRYYTRID  103 (127)
T ss_dssp             TCEEE-EEEECTTCHHHHHHHHHHHHHHHHHHTSTTTTTEEEEEEETTTCHHHHHHTTCCSSSEEEEECSSC
T ss_pred             CCCEE-EEEECCccHHHHHHhHHHHHHHHHHHhcccCCCeEEEEEEccccHhHHHhcCCccCCEEEEEeCCC
Confidence            34555 445588999999999988887665542    34677777766544434445434556555555554

>3gix_A Thioredoxin-like protein 4B; PRE-mRNA splicing, TXNL4B, DLP, cell cycle, mRNA processing, mRNA splicing, nucleus, phosphoprotein, splicing; HET: SUC; 1.33A {Homo sapiens} SCOP: c.47.1.0 PDB: 1xbs_A

Probab=95.17  E-value=0.039  Score=47.12  Aligned_cols=69  Identities=13%  Similarity=0.131  Sum_probs=45.8

Q ss_pred             CCCEEEEeecCCCCcchHHHHHHHHhccchhhhcCCeEEEEecCChhhHHhhhcCCCCCceeEeccchHH
Q 015842          229 ESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLHEYIESEVKDFWPRYWGGVVVYDQGMEF  298 (399)
Q Consensus       229 ~~pvVLvFyRg~gCP~Cr~el~~L~e~~pef~alGV~LVaIspE~~e~~ik~F~~~~l~f~VLsDp~r~l  298 (399)
                      .+..||+.|-..||+.|+.+...|.++..++... +.++.|-.+......+.|.-..+|.-++...++.+
T Consensus        22 ~~k~vlv~F~a~WC~~C~~~~p~l~~l~~~~~~~-~~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~G~~v   90 (149)
T 3gix_A           22 AEKVLVLRFGRDEDPVCLQLDDILSKTSSDLSKM-AAIYLVDVDQTAVYTQYFDISYIPSTVFFFNGQHM   90 (149)
T ss_dssp             CSSEEEEEEECTTSHHHHHHHHHHHHHHTTTTTT-EEEEEEETTTCCHHHHHTTCCSSSEEEEEETTEEE
T ss_pred             CCCEEEEEEECCCCHHHHHHHHHHHHHHHHccCc-eEEEEEECCcCHHHHHHcCCCccCeEEEEECCeEE
Confidence            3445555566889999999999998887777542 77888876555443445543566655555555555

>3ph9_A Anterior gradient protein 3 homolog; thioredoxin fold, protein disulfide isomerase, endoplasmic R isomerase; 1.83A {Homo sapiens} SCOP: c.47.1.0 PDB: 2lns_A 2lnt_A

Probab=95.11  E-value=0.027  Score=49.27  Aligned_cols=74  Identities=9%  Similarity=0.044  Sum_probs=45.1

Q ss_pred             cCCCEEEEeecCCCCcchHHHHHHHHhccchhhhc-CCeEEEEec--CChhhHHhhhcCCCCCceeEecc-chHHHHHhC
Q 015842          228 RESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDAL-GIQLFAVLH--EYIESEVKDFWPRYWGGVVVYDQ-GMEFFKALG  303 (399)
Q Consensus       228 ~~~pvVLvFyRg~gCP~Cr~el~~L~e~~pef~al-GV~LVaIsp--E~~e~~ik~F~~~~l~f~VLsDp-~r~lYkaLG  303 (399)
                      +++|++|.|+ -.||+.|+.....+.+. +++.+. +..+|.|--  +..+. ...|.-.++|--++.|+ ++.+++..|
T Consensus        43 ~~KpVlV~F~-A~WC~~Ck~m~p~~~~~-~~~~~~~~~~fv~V~vD~e~~~~-~~~~~v~~~PT~~f~~~~G~~v~~~~G  119 (151)
T 3ph9_A           43 SKKPLMVIHH-LEDCQYSQALKKVFAQN-EEIQEMAQNKFIMLNLMHETTDK-NLSPDGQYVPRIMFVDPSLTVRADIAG  119 (151)
T ss_dssp             HTCCEEEEEC-CTTCHHHHHHHHHHHHC-HHHHHHHHHTCEEEEESSCCSCG-GGCTTCCCSSEEEEECTTSCBCTTCCC
T ss_pred             cCCcEEEEEE-CCCCHhHHHHHHHHhcC-HHHHHHhhcCeEEEEecCCchhh-HhhcCCCCCCEEEEECCCCCEEEEEeC
Confidence            4677777776 89999999998888764 444322 223444433  22221 23343356787889995 455666556


Q ss_pred             C
Q 015842          304 G  304 (399)
Q Consensus       304 l  304 (399)
                      .
T Consensus       120 ~  120 (151)
T 3ph9_A          120 R  120 (151)
T ss_dssp             S
T ss_pred             C
Confidence            5

>3q6o_A Sulfhydryl oxidase 1; protein disulfide isomerase, thioredoxin, thioredoxin fold, oxidoreductase, reductive methylation; HET: MLY; 2.05A {Homo sapiens}

Probab=95.08  E-value=0.04  Score=50.21  Aligned_cols=67  Identities=19%  Similarity=0.064  Sum_probs=45.8

Q ss_pred             cCCCEEEEeecCCCCcchHHHHHHHHhccchhhh--cCCeEEEEec--CChhhHHhhhcCCCCCceeEecc
Q 015842          228 RESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDA--LGIQLFAVLH--EYIESEVKDFWPRYWGGVVVYDQ  294 (399)
Q Consensus       228 ~~~pvVLvFyRg~gCP~Cr~el~~L~e~~pef~a--lGV~LVaIsp--E~~e~~ik~F~~~~l~f~VLsDp  294 (399)
                      ..+..+|+.|-..||+.|+.....+.++..++..  .++.++.|-.  +......+.|.-..+|--++.++
T Consensus        28 ~~~~~vlv~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~v~~~~vd~~~~~~~~l~~~~~v~~~Pt~~~~~~   98 (244)
T 3q6o_A           28 GSRSAWAVEFFASWCGHCIAFAPTWXALAEDVKAWRPALYLAALDCAEETNSAVCRDFNIPGFPTVRFFXA   98 (244)
T ss_dssp             SCSSEEEEEEECTTCHHHHHHHHHHHHHHHHTGGGTTTEEEEEEETTSTTTHHHHHHTTCCSSSEEEEECT
T ss_pred             hCCCeEEEEEECCcCHHHHHHHHHHHHHHHHHHhccCcEEEEEEeCCchhhHHHHHHcCCCccCEEEEEeC
Confidence            3334555555578999999999999988877765  4788888887  33333344444356676677776

>1zma_A Bacterocin transport accessory protein; alpha-beta-alpha-sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.25A {Streptococcus pneumoniae} SCOP: c.47.1.1

Probab=95.01  E-value=0.031  Score=44.75  Aligned_cols=39  Identities=18%  Similarity=0.256  Sum_probs=26.7

Q ss_pred             CCCEEEEeecCCCCcchHHHHHHHHhccchhhhcCCeEEEEec
Q 015842          229 ESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLH  271 (399)
Q Consensus       229 ~~pvVLvFyRg~gCP~Cr~el~~L~e~~pef~alGV~LVaIsp  271 (399)
                      ++++||.| -..|||+|+.....|.++..++   +.+++.|..
T Consensus        29 ~~~~~v~f-~a~wC~~C~~~~p~l~~~~~~~---~~~v~~~~~   67 (118)
T 1zma_A           29 KETATFFI-GRKTCPYCRKFAGTLSGVVAET---KAHIYFINS   67 (118)
T ss_dssp             TCCEEEEE-ECTTCHHHHHHHHHHHHHHHHH---CCCCEEEET
T ss_pred             CCeEEEEE-ECCCCccHHHHHHHHHHHHHhc---CCeEEEEEC
Confidence            34555555 5589999999998888766544   356666643

>1fo5_A Thioredoxin; disulfide oxidoreductase, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; NMR {Methanocaldococcus jannaschii} SCOP: c.47.1.1

Probab=94.90  E-value=0.018  Score=42.84  Aligned_cols=59  Identities=8%  Similarity=0.025  Sum_probs=36.4

Q ss_pred             EEEEeecCCCCcchHHHHHHHHhccchhhhcCCeEEEEecCChhhHHhhhcCCCCCceeE
Q 015842          232 AVLLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLHEYIESEVKDFWPRYWGGVVV  291 (399)
Q Consensus       232 vVLvFyRg~gCP~Cr~el~~L~e~~pef~alGV~LVaIspE~~e~~ik~F~~~~l~f~VL  291 (399)
                      ++|++|-..|||+|+.....|.++..++. .++.++.|-.+......+.|.-...|--++
T Consensus         4 ~~vv~f~~~~C~~C~~~~~~l~~~~~~~~-~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~   62 (85)
T 1fo5_A            4 VKIELFTSPMCPHCPAAKRVVEEVANEMP-DAVEVEYINVMENPQKAMEYGIMAVPTIVI   62 (85)
T ss_dssp             EEEEEEECCCSSCCCTHHHHHHHHHHHCS-SSEEEEEEESSSSCCTTTSTTTCCSSEEEE
T ss_pred             eEEEEEeCCCCCchHHHHHHHHHHHHHcC-CceEEEEEECCCCHHHHHHCCCcccCEEEE
Confidence            34455557999999999988887655554 267888887544332233333244554444

>1nho_A Probable thioredoxin; beta sheet, alpha helix, oxidoreductase; NMR {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.47.1.1

Probab=94.83  E-value=0.022  Score=42.42  Aligned_cols=57  Identities=11%  Similarity=0.121  Sum_probs=37.1

Q ss_pred             EEeecCCCCcchHHHHHHHHhccchhhhcCCeEEEEecCChhhHHhhhcCCCCCceeE
Q 015842          234 LLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLHEYIESEVKDFWPRYWGGVVV  291 (399)
Q Consensus       234 LvFyRg~gCP~Cr~el~~L~e~~pef~alGV~LVaIspE~~e~~ik~F~~~~l~f~VL  291 (399)
                      |+.|-..|||+|+.....|.++..++.. ++.++.|-.+......+.|.-...|--++
T Consensus         5 vv~f~~~~C~~C~~~~~~l~~~~~~~~~-~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~   61 (85)
T 1nho_A            5 IEVFTSPTCPYCPMAIEVVDEAKKEFGD-KIDVEKIDIMVDREKAIEYGLMAVPAIAI   61 (85)
T ss_dssp             EEEESCSSSCCSTTHHHHHHHHHHHHCS-SCCEEEECTTTCGGGGGGTCSSCSSEEEE
T ss_pred             EEEEECCCCcchHHHHHHHHHHHHHhcC-CeEEEEEECCCCHHHHHhCCceeeCEEEE
Confidence            4445579999999999988877666543 68888887654333234443345565555

>1qgv_A Spliceosomal protein U5-15KD; snRNP, thioredoxin, transcription; 1.40A {Homo sapiens} SCOP: c.47.1.8 PDB: 1syx_A 1pqn_A

Probab=94.51  E-value=0.045  Score=46.34  Aligned_cols=73  Identities=12%  Similarity=0.013  Sum_probs=45.2

Q ss_pred             CCCEEEEeecCCCCcchHHHHHHHHhccchhhhcCCeEEEEecCChhhHHhhhcCCCCCceeEeccchHHHHHhC
Q 015842          229 ESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLHEYIESEVKDFWPRYWGGVVVYDQGMEFFKALG  303 (399)
Q Consensus       229 ~~pvVLvFyRg~gCP~Cr~el~~L~e~~pef~alGV~LVaIspE~~e~~ik~F~~~~l~f~VLsDp~r~lYkaLG  303 (399)
                      ++++||. |-..||+.|+.....|.++..++.. .+.++.|-.+......+.|.-..+|--++.+.++.+...+|
T Consensus        23 ~k~vlv~-F~a~wC~~C~~~~p~l~~l~~~~~~-~v~~~~vd~d~~~~~~~~~~i~~~Pt~~~~~~G~~v~~~~g   95 (142)
T 1qgv_A           23 DRVVVIR-FGHDWDPTCMKMDEVLYSIAEKVKN-FAVIYLVDITEVPDFNKMYELYDPCTVMFFFRNKHIMIDLG   95 (142)
T ss_dssp             SSEEEEE-EECTTSHHHHHHHHHHHHHHHHHTT-TEEEEEEETTTCCTTTTSSCSCSSCEEEEEETTEEEEEECC
T ss_pred             CCEEEEE-EECCCCHHHHHHHHHHHHHHHHhCC-CeEEEEEccccCHHHHHHcCCCCCCEEEEEECCcEEEEecC
Confidence            4455554 5568999999999999887777643 47888886554332233343345565555565555543333

>2b5e_A Protein disulfide-isomerase; 2.40A {Saccharomyces cerevisiae} SCOP: c.47.1.2 c.47.1.2 c.47.1.2 c.47.1.2 PDB: 3boa_A

Probab=94.30  E-value=0.065  Score=54.12  Aligned_cols=73  Identities=12%  Similarity=0.067  Sum_probs=49.8

Q ss_pred             chhhccCCCEEEEeecCCCCcchHHHHHHHHhccchhhhcCCeEEEEecCChhhHHhhhcCCCCCceeEeccc
Q 015842          223 ALELWRESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLHEYIESEVKDFWPRYWGGVVVYDQG  295 (399)
Q Consensus       223 LsdL~~~~pvVLvFyRg~gCP~Cr~el~~L~e~~pef~alGV~LVaIspE~~e~~ik~F~~~~l~f~VLsDp~  295 (399)
                      +.++.+.+..+|+.|-..||+.|+.....+.++..++...++.++.|-.+......+.|.-..+|--++...+
T Consensus        24 f~~~~~~~~~~lv~F~a~wC~~C~~~~p~~~~~a~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~~g   96 (504)
T 2b5e_A           24 FNEYIQSHDLVLAEFFAPWCGHCKNMAPEYVKAAETLVEKNITLAQIDCTENQDLCMEHNIPGFPSLKIFKNS   96 (504)
T ss_dssp             HHHHHTTCSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTTTCEEEEEETTTCHHHHHHTTCCSSSEEEEEETT
T ss_pred             HHHHHhcCCeEEEEEECCCCHHHHHhHHHHHHHHHHhccCCeEEEEEECCCCHHHHHhcCCCcCCEEEEEeCC
Confidence            3444555556666666799999999999999888778766899999987665544455543445544443333

>3ed3_A Protein disulfide-isomerase MPD1; thioredoxin-like domain, CXXC, endoplasmic reticulum, glycoprotein, redox-active center; 2.00A {Saccharomyces cerevisiae}

Probab=94.27  E-value=0.053  Score=51.87  Aligned_cols=67  Identities=12%  Similarity=0.163  Sum_probs=45.0

Q ss_pred             CCCEEEEeecCCCCcchHHHHHHHHhccchhhhcCCeEEEEecCC--hhhHHhhhcCCCCCceeEeccchH
Q 015842          229 ESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLHEY--IESEVKDFWPRYWGGVVVYDQGME  297 (399)
Q Consensus       229 ~~pvVLvFyRg~gCP~Cr~el~~L~e~~pef~alGV~LVaIspE~--~e~~ik~F~~~~l~f~VLsDp~r~  297 (399)
                      ++++||.|| ..||+.|+.....|.++..++... +.++.|-.+.  .....+.|.-..+|--++.+.+..
T Consensus        35 ~~~vlV~F~-A~wC~~C~~~~p~~~~la~~~~~~-~~~~~v~~d~~~~~~l~~~~~I~~~Pt~~~~~~g~~  103 (298)
T 3ed3_A           35 NYTSLVEFY-APWCGHCKKLSSTFRKAAKRLDGV-VQVAAVNCDLNKNKALCAKYDVNGFPTLMVFRPPKI  103 (298)
T ss_dssp             SSCEEEEEE-CTTCHHHHHHHHHHHHHHHHTTTT-SEEEEEETTSTTTHHHHHHTTCCBSSEEEEEECCCC
T ss_pred             CCeEEEEEE-CCCCHHHHHHHHHHHHHHHHccCC-cEEEEEEccCccCHHHHHhCCCCccceEEEEECCce
Confidence            345565555 789999999999998887777543 8888888763  222244444355666666666653

>1wjk_A C330018D20RIK protein; glutaredoxin, thioredoxin fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: c.47.1.1

Probab=94.23  E-value=0.13  Score=41.14  Aligned_cols=49  Identities=18%  Similarity=0.167  Sum_probs=29.9

Q ss_pred             CCceechhhccCCCEEEEeecCCCCcchHHHHHHHHhccchhhhcCCeEEEEecC
Q 015842          218 TPPMKALELWRESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLHE  272 (399)
Q Consensus       218 G~~VsLsdL~~~~pvVLvFyRg~gCP~Cr~el~~L~e~~pef~alGV~LVaIspE  272 (399)
                      |..-.|.......++|++| -..|||+|+.....|.++..     ++.+.-|--+
T Consensus         4 ~~~~~l~~~~~~~~~v~~f-~~~~C~~C~~~~~~L~~l~~-----~i~~~~vdi~   52 (100)
T 1wjk_A            4 GSSGNLSASNRALPVLTLF-TKAPCPLCDEAKEVLQPYKD-----RFILQEVDIT   52 (100)
T ss_dssp             CCCCCCCCSCCCCCEEEEE-ECSSCHHHHHHHHHTSTTSS-----SSEEEEEETT
T ss_pred             CcchhhhhccCCCCEEEEE-eCCCCcchHHHHHHHHHhhh-----CCeEEEEECC
Confidence            3444444444556666555 56899999877776665432     3666666544

>1a8l_A Protein disulfide oxidoreductase; PDI, thioredoxin fold; 1.90A {Pyrococcus furiosus} SCOP: c.47.1.2 c.47.1.2 PDB: 1j08_A

Probab=94.22  E-value=0.087  Score=46.78  Aligned_cols=64  Identities=11%  Similarity=-0.048  Sum_probs=41.6

Q ss_pred             CCCEEEEeecCCCCcchHHHHHHHHhccchhhh---cCCeEEEEecCChhhHHhhhcCCCCCceeEe
Q 015842          229 ESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDA---LGIQLFAVLHEYIESEVKDFWPRYWGGVVVY  292 (399)
Q Consensus       229 ~~pvVLvFyRg~gCP~Cr~el~~L~e~~pef~a---lGV~LVaIspE~~e~~ik~F~~~~l~f~VLs  292 (399)
                      +++++|+.|-..|||+|+.....|.++..++..   .++.++.|-.+......+.|.-..+|--++.
T Consensus       133 ~~~~~~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~~  199 (226)
T 1a8l_A          133 DQDVRILVFVTPTCPYCPLAVRMAHKFAIENTKAGKGKILGDMVEAIEYPEWADQYNVMAVPKIVIQ  199 (226)
T ss_dssp             CSCEEEEEEECSSCTTHHHHHHHHHHHHHHHHHTTCCCEEEEEEEGGGCHHHHHHTTCCSSCEEEEE
T ss_pred             CCCcEEEEEeCCCCCccHHHHHHHHHHHHhcccccCCcEEEEEEEcccCHHHHHhCCCcccCeEEEE
Confidence            467845555589999999999999887777763   3677877765543332344433455543333

>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain, endoplasmic reticulum, oxidor; 1.84A {Mus musculus}

Probab=94.19  E-value=0.048  Score=48.62  Aligned_cols=63  Identities=13%  Similarity=0.050  Sum_probs=42.4

Q ss_pred             cCCCEEEEeecCCCCcchHHHHHHHHhccchhhhcCCeEEEEecCChhhHHhhhcCCCCCceeEe
Q 015842          228 RESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLHEYIESEVKDFWPRYWGGVVVY  292 (399)
Q Consensus       228 ~~~pvVLvFyRg~gCP~Cr~el~~L~e~~pef~alGV~LVaIspE~~e~~ik~F~~~~l~f~VLs  292 (399)
                      .++++||.|+ ..||+.|+.....|.++..++.. .+.++.|-.+......+.|.-..+|--++.
T Consensus       113 ~~~~vlv~F~-a~wC~~C~~~~p~~~~l~~~~~~-~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~~  175 (210)
T 3apq_A          113 SGELWFVNFY-SPGCSHCHDLAPTWREFAKEVDG-LLRIGAVNCGDDRMLCRMKGVNSYPSLFIF  175 (210)
T ss_dssp             HSCCEEEEEE-CTTCHHHHHHHHHHHHHHHHTBT-TBEEEEEETTTCHHHHHHTTCCSSSEEEEE
T ss_pred             cCCcEEEEEe-CCCChhHHHHHHHHHHHHHHhcC-ceEEEEEECCccHHHHHHcCCCcCCeEEEE
Confidence            4556665555 68999999999999887776654 488888877655443444543555654444

>3idv_A Protein disulfide-isomerase A4; thioredoxin-like fold, disulfide bond, endoplasmic reticulum isomerase, redox-active center; 1.95A {Homo sapiens} PDB: 2dj2_A

Probab=94.16  E-value=0.044  Score=48.88  Aligned_cols=72  Identities=17%  Similarity=0.164  Sum_probs=45.6

Q ss_pred             hhhccCCCEEEEeecCCCCcchHHHHHHHHhccchhhhcC--CeEEEEecCChhhHHhhhcCCCCCceeEeccc
Q 015842          224 LELWRESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALG--IQLFAVLHEYIESEVKDFWPRYWGGVVVYDQG  295 (399)
Q Consensus       224 sdL~~~~pvVLvFyRg~gCP~Cr~el~~L~e~~pef~alG--V~LVaIspE~~e~~ik~F~~~~l~f~VLsDp~  295 (399)
                      .++..+++.+++.|-..||+.|+.....|.++..++...+  +.++.|-.+......+.|.-..+|--++.+.+
T Consensus       141 ~~~~~~~~~~~v~f~a~wC~~C~~~~p~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~~g  214 (241)
T 3idv_A          141 DEVVNDADIILVEFYAPWCGHCKKLAPEYEKAAKELSKRSPPIPLAKVDATAETDLAKRFDVSGYPTLKIFRKG  214 (241)
T ss_dssp             HHHHHHCSEEEEEEECTTCTGGGGTHHHHHHHHHHHHTSSSCCCEEEEETTTCHHHHHHTTCCSSSEEEEEETT
T ss_pred             HHhhccCCeEEEEEECCCCHHHHHhHHHHHHHHHHHhccCCcEEEEEEECCCCHHHHHHcCCcccCEEEEEECC
Confidence            3444444455555568899999998888888877777654  77888876554433444443455544454444

>3f8u_A Protein disulfide-isomerase A3ERP57; endoplasmic reticulum, glycoprotein, immunoglobulin domain, microsome, protein disulfide isomerase, thioredoxin-like FO like domain; HET: NAG; 2.60A {Homo sapiens} PDB: 2dmm_A 2alb_A

Probab=93.82  E-value=0.091  Score=52.51  Aligned_cols=67  Identities=7%  Similarity=0.018  Sum_probs=42.9

Q ss_pred             CCCEEEEeecCCCCcchHHHHHHHHhccchhhhc-CCeEEEEecCChhhHHhhhcCCCCCceeEeccchH
Q 015842          229 ESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDAL-GIQLFAVLHEYIESEVKDFWPRYWGGVVVYDQGME  297 (399)
Q Consensus       229 ~~pvVLvFyRg~gCP~Cr~el~~L~e~~pef~al-GV~LVaIspE~~e~~ik~F~~~~l~f~VLsDp~r~  297 (399)
                      ++++||.| -..||+.|+.....|.++...+... ++.++.|-.+..+ ....|.-..+|--++.+.+..
T Consensus       370 ~k~vlv~f-~a~wC~~C~~~~p~~~~l~~~~~~~~~v~~~~id~~~~~-~~~~~~v~~~Pt~~~~~~~~~  437 (481)
T 3f8u_A          370 NKDVLIEF-YAPWCGHCKNLEPKYKELGEKLSKDPNIVIAKMDATAND-VPSPYEVRGFPTIYFSPANKK  437 (481)
T ss_dssp             TCEEEEEE-ECTTBHHHHHHHHHHHHHHHHTTTCSSEEEEEEETTSSC-CCTTCCCCSSSEEEEECTTCT
T ss_pred             CCcEEEEE-ecCcChhHHHhhHHHHHHHHHhccCCCEEEEEEECCchh-hHhhCCCcccCEEEEEeCCCe
Confidence            34555554 5899999999999998887777654 5666666544321 123343356666677777665

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=93.78  E-value=0.054  Score=50.17  Aligned_cols=63  Identities=11%  Similarity=0.088  Sum_probs=42.5

Q ss_pred             CCCEEEEeecCCCCcchHHHHHHHHhccchhhhcCCeEEEEecCChhhHHhhhcCCCCCceeEec
Q 015842          229 ESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLHEYIESEVKDFWPRYWGGVVVYD  293 (399)
Q Consensus       229 ~~pvVLvFyRg~gCP~Cr~el~~L~e~~pef~alGV~LVaIspE~~e~~ik~F~~~~l~f~VLsD  293 (399)
                      ++++||.|| ..||+.|+.....|.+...++.. .+.++.|-.+......+.|.-..+|--++..
T Consensus        26 ~~~v~v~f~-a~wC~~C~~~~p~~~~~~~~~~~-~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~   88 (287)
T 3qou_A           26 TTPVLFYFW-SERSQHCLQLTPILESLAAQYNG-QFILAKLDCDAEQMIAAQFGLRAIPTVYLFQ   88 (287)
T ss_dssp             TSCEEEEEE-CTTCTTTTTTHHHHHHHHHHHTS-SSEEEEEETTTCHHHHHTTTCCSSSEEEEEE
T ss_pred             CCeEEEEEE-CCCChHHHHHHHHHHHHHHHcCC-CeEEEEEeCccCHHHHHHcCCCCCCeEEEEE
Confidence            456666665 78999999998888877766653 4888888876544434555435556444443

>2trc_P Phosducin, MEKA, PP33; transducin, beta-gamma, signal transduction, regulation, phosphorylation, G proteins, thioredoxin, vision; 2.40A {Rattus norvegicus} SCOP: c.47.1.6

Probab=93.44  E-value=0.062  Score=49.30  Aligned_cols=65  Identities=14%  Similarity=0.142  Sum_probs=40.8

Q ss_pred             CCEEEEeecCCCCcchHHHHHHHHhccchhhhcCCeEEEEecCChhhHHhhhcCCCCCceeEeccchHH
Q 015842          230 SPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLHEYIESEVKDFWPRYWGGVVVYDQGMEF  298 (399)
Q Consensus       230 ~pvVLvFyRg~gCP~Cr~el~~L~e~~pef~alGV~LVaIspE~~e~~ik~F~~~~l~f~VLsDp~r~l  298 (399)
                      +++||.|| ..||+.|+.....|.++..++.  ++.++.|-.+.+ .....|.-..+|--++...+..+
T Consensus       121 k~vvV~F~-a~wC~~C~~l~p~l~~la~~~~--~v~f~~vd~~~~-~l~~~~~i~~~PTl~~~~~G~~v  185 (217)
T 2trc_P          121 TTIVVNIY-EDGVRGCDALNSSLECLAAEYP--MVKFCKIRASNT-GAGDRFSSDVLPTLLVYKGGELI  185 (217)
T ss_dssp             CEEEEEEE-CTTSTTHHHHHHHHHHHHTTCT--TSEEEEEEHHHH-TCSTTSCGGGCSEEEEEETTEEE
T ss_pred             cEEEEEEE-CCCCccHHHHHHHHHHHHHHCC--CeEEEEEECCcH-HHHHHCCCCCCCEEEEEECCEEE
Confidence            46666666 7999999999998888776663  688888876521 11233332445544444444433

>3qcp_A QSOX from trypanosoma brucei (tbqsox); ERV fold, thioredoxin fold, sulfhydryl oxidase, oxidoreducta; HET: FAD; 2.30A {Trypanosoma brucei} PDB: 3qd9_A*

Probab=92.64  E-value=0.18  Score=52.11  Aligned_cols=66  Identities=15%  Similarity=0.126  Sum_probs=45.6

Q ss_pred             CCEEEEeecCCCCcchHHHHHHHHhccchhhhc-C------CeEEEEecCChhhHHhhhcCCCCCceeEeccch
Q 015842          230 SPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDAL-G------IQLFAVLHEYIESEVKDFWPRYWGGVVVYDQGM  296 (399)
Q Consensus       230 ~pvVLvFyRg~gCP~Cr~el~~L~e~~pef~al-G------V~LVaIspE~~e~~ik~F~~~~l~f~VLsDp~r  296 (399)
                      +|+||.|| -.||+.|+...-.+.++..++... |      +.++.|-.+......+.|.-..+|--++.+++.
T Consensus        43 k~VlV~Fy-A~WC~pCk~~~P~l~~la~~~~~~~g~~~~~~v~f~~VD~d~~~~la~~y~V~~~PTlilf~~gg  115 (470)
T 3qcp_A           43 CPWIVLFY-NDGCGACRRYASTFSKFAGGLKVEHGKDALQIATAAAVNCASEVDLCRKYDINFVPRLFFFYPRD  115 (470)
T ss_dssp             SCEEEEEE-CTTCHHHHHHHHHHHHHHHTSCCSSCSSGGGGCEEEEEETTTCHHHHHHTTCCSSCEEEEEEESS
T ss_pred             CeEEEEEE-CCCCHHHHHHHHHHHHHHHHHhhhcccccCceEEEEEEECCCCHHHHHHcCCCccCeEEEEECCC
Confidence            56776666 689999999999998887777533 3      888888876554434555435566556665543

>1eej_A Thiol:disulfide interchange protein; oxidoreductase, protein disulfide isomerase, protein folding, redox protein, redox-active center; HET: MES; 1.90A {Escherichia coli} SCOP: c.47.1.9 d.17.3.1 PDB: 1tjd_A 1jzd_A 1jzo_A 1g0t_A 2iyj_A

Probab=92.39  E-value=0.067  Score=48.43  Aligned_cols=38  Identities=21%  Similarity=0.293  Sum_probs=28.6

Q ss_pred             CCCEEEEeecCCCCcchHHHHHHHHhccchhhhcCCeEEEEe
Q 015842          229 ESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVL  270 (399)
Q Consensus       229 ~~pvVLvFyRg~gCP~Cr~el~~L~e~~pef~alGV~LVaIs  270 (399)
                      +++++|+.|=-+|||||+.....|.+..    +.|++++.+-
T Consensus        85 ~~k~~vv~F~d~~Cp~C~~~~~~l~~l~----~~~v~v~~~~  122 (216)
T 1eej_A           85 QEKHVITVFTDITCGYCHKLHEQMADYN----ALGITVRYLA  122 (216)
T ss_dssp             TCCEEEEEEECTTCHHHHHHHTTHHHHH----HTTEEEEEEE
T ss_pred             CCCEEEEEEECCCCHHHHHHHHHHHHHH----hCCcEEEEEE
Confidence            4566777777999999999888877643    2378888763

>2ywm_A Glutaredoxin-like protein; redox protein, structural genomics, NPPSFA, national project protein structural and functional analyses; 2.30A {Aquifex aeolicus} PDB: 2ayt_A

Probab=92.36  E-value=0.21  Score=44.52  Aligned_cols=61  Identities=11%  Similarity=0.024  Sum_probs=39.8

Q ss_pred             CCCEEEEeecCCCCcchHHHHHHHHhccchhhhcCCeEEEEecCChhhHHhhhcCCCCCceeE
Q 015842          229 ESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLHEYIESEVKDFWPRYWGGVVV  291 (399)
Q Consensus       229 ~~pvVLvFyRg~gCP~Cr~el~~L~e~~pef~alGV~LVaIspE~~e~~ik~F~~~~l~f~VL  291 (399)
                      ++|++|+.|-..||++|+.....+.++..++  -++.++.|-.+......+.|.-..+|--++
T Consensus       135 ~~~~~~v~F~a~wC~~C~~~~~~~~~~~~~~--~~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~  195 (229)
T 2ywm_A          135 DIPIEIWVFVTTSCGYCPSAAVMAWDFALAN--DYITSKVIDASENQDLAEQFQVVGVPKIVI  195 (229)
T ss_dssp             CSCEEEEEEECTTCTTHHHHHHHHHHHHHHC--TTEEEEEEEGGGCHHHHHHTTCCSSSEEEE
T ss_pred             CCCeEEEEEECCCCcchHHHHHHHHHHHHHC--CCeEEEEEECCCCHHHHHHcCCcccCEEEE
Confidence            4677666566799999999998887765555  267777776544333344443345555455

>3gyk_A 27KDA outer membrane protein; APC61738.2, silicibacter pomeroyi DSS-3, thioredoxin-like, oxidoreductase, structural genomics, PSI-2; HET: MSE; 1.76A {Silicibacter pomeroyi}

Probab=92.12  E-value=0.13  Score=44.06  Aligned_cols=48  Identities=10%  Similarity=0.059  Sum_probs=33.5

Q ss_pred             CCceechhhccCCCEEEEeecCCCCcchHHHHHHHHhccchhhhcCCeEEEE
Q 015842          218 TPPMKALELWRESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAV  269 (399)
Q Consensus       218 G~~VsLsdL~~~~pvVLvFyRg~gCP~Cr~el~~L~e~~pef~alGV~LVaI  269 (399)
                      +..+.+.+  .++|++|+.|=-+|||+|+.....|.+...+..  +++++.+
T Consensus        12 ~~~~~~G~--~~a~v~i~~f~d~~Cp~C~~~~~~l~~l~~~~~--~v~~~~~   59 (175)
T 3gyk_A           12 PNAPVLGN--PEGDVTVVEFFDYNCPYCRRAMAEVQGLVDADP--NVRLVYR   59 (175)
T ss_dssp             TTSCEEEC--TTCSEEEEEEECTTCHHHHHHHHHHHHHHHHCT--TEEEEEE
T ss_pred             CCCCCcCC--CCCCEEEEEEECCCCccHHHHHHHHHHHHHhCC--CEEEEEE
Confidence            44444555  457888899999999999999988877654432  2455544

>2hls_A Protein disulfide oxidoreductase; thioredoxin fold; 1.93A {Aeropyrum pernix}

Probab=92.08  E-value=0.28  Score=45.21  Aligned_cols=62  Identities=11%  Similarity=-0.104  Sum_probs=39.0

Q ss_pred             CCEEEEeecCCCCcchHHHHHHHHhccchhhh---cCCeEEEEecCChhhHHhhhcCCCCCceeE
Q 015842          230 SPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDA---LGIQLFAVLHEYIESEVKDFWPRYWGGVVV  291 (399)
Q Consensus       230 ~pvVLvFyRg~gCP~Cr~el~~L~e~~pef~a---lGV~LVaIspE~~e~~ik~F~~~~l~f~VL  291 (399)
                      ++++|+.|-..|||+|+.....|.++..++..   .++.++.|-........+.|.-..+|--++
T Consensus       138 ~~~~vv~F~a~wC~~C~~~~p~l~~la~~~~~~~~~~v~~~~vd~~~~~~~~~~~~V~~vPt~~i  202 (243)
T 2hls_A          138 GRVHIETIITPSCPYCPYAVLLAHMFAYEAWKQGNPVILSEAVEAYENPDIADKYGVMSVPSIAI  202 (243)
T ss_dssp             SCEEEEEEECSSCSSHHHHHHHHHHHHHHHHHTTCCCEEEEEEETTTCHHHHHHTTCCSSSEEEE
T ss_pred             CCcEEEEEECCCCCCcHHHHHHHHHHHHHcccccCCcEEEEEEECccCHHHHHHcCCeeeCeEEE
Confidence            56666656669999999999999887666632   467777775543333234443344453344

>1wik_A Thioredoxin-like protein 2; picot homology 2 domain, picot protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: c.47.1.1

Probab=91.96  E-value=0.39  Score=38.74  Aligned_cols=40  Identities=13%  Similarity=0.160  Sum_probs=26.9

Q ss_pred             chhhccCCCEEEEeecC----CCCcchHHHHHHHHhccchhhhcCCeEEEEe
Q 015842          223 ALELWRESPAVLLCIRR----PGCIMCRAEAHQLYAKKPIFDALGIQLFAVL  270 (399)
Q Consensus       223 LsdL~~~~pvVLvFyRg----~gCP~Cr~el~~L~e~~pef~alGV~LVaIs  270 (399)
                      +.++.+..+++ +|..+    .|||+|+....-|.+       +|+....|-
T Consensus         8 ~~~~i~~~~vv-vy~~g~~~~~~Cp~C~~ak~~L~~-------~~i~~~~vd   51 (109)
T 1wik_A            8 LKVLTNKASVM-LFMKGNKQEAKCGFSKQILEILNS-------TGVEYETFD   51 (109)
T ss_dssp             HHHHHTTSSEE-EEESSTTTCCCSSTHHHHHHHHHH-------TCSCEEEEE
T ss_pred             HHHHhccCCEE-EEEecCCCCCCCchHHHHHHHHHH-------cCCCeEEEE
Confidence            45667777744 57776    999999877666654       356655554

>3kp8_A Vkorc1/thioredoxin domain protein; blood coagulation, disulfide formation, redox partner, oxidoreductase; 1.66A {Synechococcus SP}

Probab=91.95  E-value=0.041  Score=44.68  Aligned_cols=38  Identities=11%  Similarity=-0.009  Sum_probs=25.6

Q ss_pred             ceechhhccCCCEEEEeecCCCCcchHHHHHHHHhccchh
Q 015842          220 PMKALELWRESPAVLLCIRRPGCIMCRAEAHQLYAKKPIF  259 (399)
Q Consensus       220 ~VsLsdL~~~~pvVLvFyRg~gCP~Cr~el~~L~e~~pef  259 (399)
                      .+++++... +++||.|| -.|||.|+.....|.++..++
T Consensus         4 ~~~la~~~~-k~~vV~F~-A~WC~~C~~~~p~~~~~a~~~   41 (106)
T 3kp8_A            4 AVGLAAHLR-QIGGTMYG-AYWCPHCQDQKELFGAAFDQV   41 (106)
T ss_dssp             HHHHHHHHH-HHTCEEEE-CTTCHHHHHHHHHHGGGGGGS
T ss_pred             hhHHHHhcC-CCEEEEEE-CCCCHHHHHHHHHHHHHHHhC
Confidence            445555433 34555554 689999999988888776554

>2b5e_A Protein disulfide-isomerase; 2.40A {Saccharomyces cerevisiae} SCOP: c.47.1.2 c.47.1.2 c.47.1.2 c.47.1.2 PDB: 3boa_A

Probab=91.81  E-value=0.21  Score=50.35  Aligned_cols=43  Identities=14%  Similarity=0.237  Sum_probs=31.6

Q ss_pred             cCCCEEEEeecCCCCcchHHHHHHHHhccchhhhc--CCeEEEEec
Q 015842          228 RESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDAL--GIQLFAVLH  271 (399)
Q Consensus       228 ~~~pvVLvFyRg~gCP~Cr~el~~L~e~~pef~al--GV~LVaIsp  271 (399)
                      .++++||.|| ..||+.|+.....+.++..++...  ++.++.|-.
T Consensus       375 ~~k~vlv~F~-a~wC~~C~~~~p~~~~l~~~~~~~~~~v~~~~vd~  419 (504)
T 2b5e_A          375 PKKDVLVLYY-APWCGHCKRLAPTYQELADTYANATSDVLIAKLDH  419 (504)
T ss_dssp             TTCCEEEEEE-CTTCHHHHHHHHHHHHHHHHHHHHCSSCEEEEEEG
T ss_pred             CCCCEEEEEE-CCCChhHHHHhHHHHHHHHHhhccCCcEEEEEecC
Confidence            3567777766 699999999999998887777633  455555543

>2r2j_A Thioredoxin domain-containing protein 4; CRFS motif, chaperone, endoplasmic reticulum, S response; 2.60A {Homo sapiens}

Probab=91.68  E-value=0.15  Score=49.86  Aligned_cols=63  Identities=6%  Similarity=0.041  Sum_probs=40.7

Q ss_pred             hhccCCCEEEEeecCCCCcchHHHHHHHHhccchhhh-----cCCeEEEEecCChhhHHhhhcCCCCC
Q 015842          225 ELWRESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDA-----LGIQLFAVLHEYIESEVKDFWPRYWG  287 (399)
Q Consensus       225 dL~~~~pvVLvFyRg~gCP~Cr~el~~L~e~~pef~a-----lGV~LVaIspE~~e~~ik~F~~~~l~  287 (399)
                      ++++++..||+.|-..||+.|+..+..+.++..++++     .++.++.|-.+......+.|.-..+|
T Consensus        17 ~~~~~~~~vlV~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~v~~~~Vd~~~~~~l~~~~~v~~~P   84 (382)
T 2r2j_A           17 EILNNADVALVNFYADWCRFSQMLHPIFEEASDVIKEEFPNENQVVFARVDCDQHSDIAQRYRISKYP   84 (382)
T ss_dssp             HHHHHCSEEEEEEECTTCHHHHHHHHHHHHHHHHHTTCC---CCEEEEEEETTTCHHHHHHTTCCEES
T ss_pred             HHHhcCCeEEEEEECCCCHHHHHHHHHHHHHHHHHHhhcCCCCceEEEEEECCccHHHHHhcCCCcCC
Confidence            3444444555555679999999999999888777753     23778888766544334444323344

>2e7p_A Glutaredoxin; thioredoxin fold, poplar, electron transport; HET: GSH; 2.10A {Populus tremula x populus tremuloides} PDB: 1z7p_A 1z7r_A

Probab=91.55  E-value=0.095  Score=41.71  Aligned_cols=31  Identities=23%  Similarity=0.323  Sum_probs=21.7

Q ss_pred             hhhccCCCEEEEeecCCCCcchHHHHHHHHhcc
Q 015842          224 LELWRESPAVLLCIRRPGCIMCRAEAHQLYAKK  256 (399)
Q Consensus       224 sdL~~~~pvVLvFyRg~gCP~Cr~el~~L~e~~  256 (399)
                      .++.+..++|+  |-..|||+|+.....|.+..
T Consensus        14 ~~~~~~~~vv~--f~a~~C~~C~~~~~~l~~~~   44 (116)
T 2e7p_A           14 KELASSAPVVV--FSKTYCGYCNRVKQLLTQVG   44 (116)
T ss_dssp             HHHHTSSSEEE--EECTTCHHHHHHHHHHHHHT
T ss_pred             HHHHcCCCEEE--EECCCChhHHHHHHHHHHcC
Confidence            55566666554  45689999998877776653

>1oaz_A Thioredoxin 1; immune system, antibody/complex, antibody, allergy, IGE, conformational diversity, multispecficity, redox-active center; 2.77A {Escherichia coli} SCOP: c.47.1.1

Probab=91.52  E-value=0.18  Score=41.30  Aligned_cols=64  Identities=11%  Similarity=0.113  Sum_probs=37.6

Q ss_pred             cCCCEEEEeecCCCCc--------------chHHHHHHHHhccchhhhcCCeEEEEecCChhhHHhhhcCCCCCceeEe
Q 015842          228 RESPAVLLCIRRPGCI--------------MCRAEAHQLYAKKPIFDALGIQLFAVLHEYIESEVKDFWPRYWGGVVVY  292 (399)
Q Consensus       228 ~~~pvVLvFyRg~gCP--------------~Cr~el~~L~e~~pef~alGV~LVaIspE~~e~~ik~F~~~~l~f~VLs  292 (399)
                      +.++.||+.|-..||+              .|+.....+.++..++.. .+.++.|-.+......+.|.-..+|--++.
T Consensus        19 ~~~k~vlv~F~a~wC~~c~~l~~~~~~~~~~C~~~~p~~~~l~~~~~~-~~~~~~vd~d~~~~l~~~~~v~~~Pt~~~~   96 (123)
T 1oaz_A           19 KADGAILVDFWAEWCGPIEESDDRRYDLVGPCKMIAPILDEIADEYQG-KLTVAKLNIDQNPGTAPKYGIRGIPTLLLF   96 (123)
T ss_dssp             SCSSEEEEEEECSSCSCBSSSTTSCCSCCCCCCTTHHHHTTC--------CEEEEEETTSCTTTGGGGTCCBSSEEEEE
T ss_pred             hCCCeEEEEEECCCCccccccccccccCCCCcHHHHHHHHHHHHHhcC-CeEEEEEECCCCHHHHHHcCCCccCEEEEE
Confidence            4444455555678999              999999999888777754 488888876654432344443455655554

>2dbc_A PDCL2, unnamed protein product; phosducin-like protein, thioredoxin_FOLD, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=91.37  E-value=0.27  Score=40.86  Aligned_cols=68  Identities=16%  Similarity=0.183  Sum_probs=41.9

Q ss_pred             EEEEeecCCCCcchHHHHHHHHhccchhhhcCCeEEEEecCChhhHHhhhcCCCCCceeEeccchHHHHHhCC
Q 015842          232 AVLLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLHEYIESEVKDFWPRYWGGVVVYDQGMEFFKALGG  304 (399)
Q Consensus       232 vVLvFyRg~gCP~Cr~el~~L~e~~pef~alGV~LVaIspE~~e~~ik~F~~~~l~f~VLsDp~r~lYkaLGl  304 (399)
                      .||+.|-..||+.|+.....|.++..++  .++.++.|-.+...   +.|.-..+|--++.+.++.+.+..|.
T Consensus        32 ~vvv~f~a~wC~~C~~~~p~l~~la~~~--~~v~~~~vd~~~~~---~~~~i~~~Pt~~~~~~G~~v~~~~G~   99 (135)
T 2dbc_A           32 WVVIHLYRSSVPMCLVVNQHLSVLARKF--PETKFVKAIVNSCI---EHYHDNCLPTIFVYKNGQIEGKFIGI   99 (135)
T ss_dssp             EEEEEECCTTCHHHHHHHHHHHHHHHHC--SSEEEEEECCSSSC---SSCCSSCCSEEEEESSSSCSEEEEST
T ss_pred             EEEEEEECCCChHHHHHHHHHHHHHHHC--CCcEEEEEEhhcCc---ccCCCCCCCEEEEEECCEEEEEEEeE
Confidence            4445555799999999998888766555  25777777654421   33433455655666655554443343

>1t3b_A Thiol:disulfide interchange protein DSBC; oxidoreductase, protein disulfide isomerase, protein folding, redox protein; 2.50A {Haemophilus influenzae} SCOP: c.47.1.9 d.17.3.1

Probab=91.21  E-value=0.15  Score=46.05  Aligned_cols=37  Identities=22%  Similarity=0.370  Sum_probs=28.3

Q ss_pred             CCCEEEEeecCCCCcchHHHHHHHHhccchhhhcCCeEEEE
Q 015842          229 ESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAV  269 (399)
Q Consensus       229 ~~pvVLvFyRg~gCP~Cr~el~~L~e~~pef~alGV~LVaI  269 (399)
                      +++++|+.|--+|||||+.....|.+    +.+.|++++.+
T Consensus        85 ~~k~~vv~F~d~~Cp~C~~~~~~l~~----~~~~~v~v~~~  121 (211)
T 1t3b_A           85 NEKHVVTVFMDITCHYCHLLHQQLKE----YNDLGITVRYL  121 (211)
T ss_dssp             TCSEEEEEEECTTCHHHHHHHTTHHH----HHHTTEEEEEE
T ss_pred             CCCEEEEEEECCCCHhHHHHHHHHHH----HHhCCcEEEEE
Confidence            46778888889999999988877766    33347888765

>2kso_A Ephrin type-A receptor 2; SAM domain, heterodimer, cell signaling, angiogenesis, apopt ATP-binding, cataract; NMR {Homo sapiens}

Probab=91.13  E-value=0.051  Score=43.18  Aligned_cols=53  Identities=21%  Similarity=0.531  Sum_probs=46.2

Q ss_pred             HHHHhhhccchhhhhhhHHHHHcCCC-hHHHhccCcccchhhhcccc-cccccccc
Q 015842           36 ALEIRSYLHDRALMQYADIFEASGKS-LPELLNLSTGDLSSQFGMKR-GHMARFKD   89 (399)
Q Consensus        36 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~   89 (399)
                      .-.+..||..-+|-||++.+++.|.+ +..|+.++..|| ..-|+.. ||-.|.+.
T Consensus        16 ~~~V~~WL~~lgL~qY~~~F~~~gid~~~~L~~lt~~DL-~~lGI~~~GhRkkIl~   70 (82)
T 2kso_A           16 HMTVSEWLESIKMQQYTEHFMAAGYTAIEKVVQMTNDDI-KRIGVRLPGHQKRIAY   70 (82)
T ss_dssp             --CHHHHHHHTTCTTHHHHHHHTTCCSHHHHTTCCHHHH-HHHHCCCTTHHHHHHH
T ss_pred             cchHHHHHHHCCCHHHHHHHHHcCCChHHHHHhCCHHHH-HHCCCCChhHHHHHHH
Confidence            34577899999999999999999999 999999999999 7899986 99877653

>1z6m_A Conserved hypothetical protein; structural genomics, MCSG,, protein structure initiative, midwest center for structural genomics; HET: MSE; 1.30A {Enterococcus faecalis} SCOP: c.47.1.13

Probab=91.12  E-value=0.2  Score=42.99  Aligned_cols=49  Identities=12%  Similarity=0.083  Sum_probs=34.9

Q ss_pred             ceechhhccCCCEEEEeecCCCCcchHHHHHHHHhccchhhhc-CCeEEEEe
Q 015842          220 PMKALELWRESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDAL-GIQLFAVL  270 (399)
Q Consensus       220 ~VsLsdL~~~~pvVLvFyRg~gCP~Cr~el~~L~e~~pef~al-GV~LVaIs  270 (399)
                      .+.+..  .+.|+.|+.|=.++||+|...-..+.+...++.+. .++++.+-
T Consensus        19 ~~~~G~--~~a~v~i~~f~D~~Cp~C~~~~~~~~~~~~~~~~~~~v~~~~~~   68 (175)
T 1z6m_A           19 GLHIGE--SNAPVKMIEFINVRCPYCRKWFEESEELLAQSVKSGKVERIIKL   68 (175)
T ss_dssp             SEEESC--TTCSEEEEEEECTTCHHHHHHHHHHHHHHHHHHHTTSEEEEEEE
T ss_pred             CcccCC--CCCCeEEEEEECCCCcchHHHHHHHHHHHHHHhhCCcEEEEEEe
Confidence            344444  35788889999999999999988887766555323 47776653

>1b4f_A EPHB2; SAM domain, EPH receptor, signal transduction, oligomer; 1.95A {Homo sapiens} SCOP: a.60.1.2 PDB: 1f0m_A 1sgg_A

Probab=90.99  E-value=0.043  Score=43.26  Aligned_cols=51  Identities=20%  Similarity=0.392  Sum_probs=45.7

Q ss_pred             HHhhhccchhhhhhhHHHHHcCC-ChHHHhccCcccchhhhcccc-cccccccc
Q 015842           38 EIRSYLHDRALMQYADIFEASGK-SLPELLNLSTGDLSSQFGMKR-GHMARFKD   89 (399)
Q Consensus        38 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~   89 (399)
                      ++..||+.-+|-||.+.+++.|. ++..|+.++..||. ..|+.. ||-.|.+.
T Consensus        13 ~v~~WL~~lgL~~Y~~~F~~~~~~~~~~l~~lt~~dL~-~lGI~~~GhrkkIl~   65 (82)
T 1b4f_A           13 TVDEWLEAIKMGQYKESFANAGFTSFDVVSQMMMEDIL-RVGVTLAGHQKKILN   65 (82)
T ss_dssp             SHHHHHHHTTCGGGHHHHHHTTCCSHHHHTTCCHHHHH-HTTCCCHHHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHcCCCCHHHHHhCCHHHHH-HcCCCCHHHHHHHHH
Confidence            56779999999999999999999 89999999999998 689986 99877653

>1a8l_A Protein disulfide oxidoreductase; PDI, thioredoxin fold; 1.90A {Pyrococcus furiosus} SCOP: c.47.1.2 c.47.1.2 PDB: 1j08_A

Probab=90.80  E-value=0.6  Score=41.24  Aligned_cols=43  Identities=14%  Similarity=0.192  Sum_probs=30.5

Q ss_pred             CCCEEEEeecCC-CCcchHHHHHHHHhccchhhhcCCeEEEEecCC
Q 015842          229 ESPAVLLCIRRP-GCIMCRAEAHQLYAKKPIFDALGIQLFAVLHEY  273 (399)
Q Consensus       229 ~~pvVLvFyRg~-gCP~Cr~el~~L~e~~pef~alGV~LVaIspE~  273 (399)
                      ++|++|++|--. ||++|+.....|.++...  .-.+.++.|-.+.
T Consensus        21 ~~~v~lv~f~~~~~C~~C~~~~~~~~~la~~--~~~v~~~~vd~~~   64 (226)
T 1a8l_A           21 VNPVKLIVFVRKDHCQYCDQLKQLVQELSEL--TDKLSYEIVDFDT   64 (226)
T ss_dssp             CSCEEEEEEECSSSCTTHHHHHHHHHHHHTT--CTTEEEEEEETTS
T ss_pred             CCCeEEEEEecCCCCchhHHHHHHHHHHHhh--CCceEEEEEeCCC
Confidence            467877777777 999999888877775432  2247777777665

>3l9v_A Putative thiol-disulfide isomerase or thioredoxin; thioredoxin-fold, SRGA, thiol-disulfide oxidoreductase, ISOM oxidoreductase; HET: PE8 P4C P6G; 2.15A {Salmonella enterica subsp} SCOP: c.47.1.0

Probab=90.70  E-value=0.13  Score=45.60  Aligned_cols=39  Identities=21%  Similarity=0.346  Sum_probs=25.8

Q ss_pred             CCCEEEEeecCCCCcchHHHHHHH---HhccchhhhcCCeEEEE
Q 015842          229 ESPAVLLCIRRPGCIMCRAEAHQL---YAKKPIFDALGIQLFAV  269 (399)
Q Consensus       229 ~~pvVLvFyRg~gCP~Cr~el~~L---~e~~pef~alGV~LVaI  269 (399)
                      ..|+||.|+ -+|||+|+.....|   .++..++.. .++++-+
T Consensus        14 ~~~~vvef~-d~~Cp~C~~~~~~~~~~~~~~~~~~~-~v~~~~~   55 (189)
T 3l9v_A           14 DAPAVVEFF-SFYCPPCYAFSQTMGVDQAIRHVLPQ-GSRMVKY   55 (189)
T ss_dssp             TCCSEEEEE-CTTCHHHHHHHHTSCHHHHHHTTCCT-TCCEEEE
T ss_pred             CCCEEEEEE-CCCChhHHHHhHhccchHHHHHhCCC-CCEEEEE
Confidence            368899888 89999999877654   222222222 5676665

>3hd5_A Thiol:disulfide interchange protein DSBA; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.35A {Bordetella parapertussis}

Probab=90.57  E-value=0.18  Score=44.09  Aligned_cols=40  Identities=15%  Similarity=0.041  Sum_probs=27.7

Q ss_pred             CCCEEEEeecCCCCcchHHHHHHHHhccchhhhcCCeEEEE
Q 015842          229 ESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAV  269 (399)
Q Consensus       229 ~~pvVLvFyRg~gCP~Cr~el~~L~e~~pef~alGV~LVaI  269 (399)
                      +++++|+.|-.+|||+|+.....|.++..++.. .+.++-+
T Consensus        24 ~~~~~vv~f~d~~Cp~C~~~~~~l~~l~~~~~~-~v~~~~~   63 (195)
T 3hd5_A           24 PGKIEVLEFFAYTCPHCAAIEPMVEDWAKTAPQ-DVVLKQV   63 (195)
T ss_dssp             TTCEEEEEEECTTCHHHHHHHHHHHHHHHTCCT-TEEEEEE
T ss_pred             CCCeEEEEEECCCCccHHHhhHHHHHHHHHCCC-CeEEEEE
Confidence            456677777799999999988877766544433 4555444

>2es7_A Q8ZP25_salty, putative thiol-disulfide isomerase and thioredoxi; structural genomics, PSI, protein structure initiative; 2.80A {Salmonella typhimurium} SCOP: c.47.1.20 PDB: 2gzp_A 2jzt_A

Probab=90.54  E-value=0.096  Score=44.82  Aligned_cols=76  Identities=13%  Similarity=0.038  Sum_probs=36.0

Q ss_pred             chhhccC-CCEEEEeecCC-CCcchHHHHHHHHhccchhhhcCCe--EEEEecCChhhHHhhhcCCCCCceeEeccchHH
Q 015842          223 ALELWRE-SPAVLLCIRRP-GCIMCRAEAHQLYAKKPIFDALGIQ--LFAVLHEYIESEVKDFWPRYWGGVVVYDQGMEF  298 (399)
Q Consensus       223 LsdL~~~-~pvVLvFyRg~-gCP~Cr~el~~L~e~~pef~alGV~--LVaIspE~~e~~ik~F~~~~l~f~VLsDp~r~l  298 (399)
                      +.++... +.+||.|+-.+ ||+.|+...-.|.++..++  -++.  ++.|-.+......+.|.-..+|--++.-.++.+
T Consensus        27 f~~~i~~~~~~vv~f~~~~~~C~~C~~l~P~l~~la~~~--~~v~~~~~~Vd~d~~~~la~~~~V~~iPT~~~fk~G~~v  104 (142)
T 2es7_A           27 VDDWIKRVGDGVILLSSDPRRTPEVSDNPVMIAELLREF--PQFDWQVAVADLEQSEAIGDRFNVRRFPATLVFTDGKLR  104 (142)
T ss_dssp             -------CCSEEEEECCCSCC----CCHHHHHHHHHHTC--TTSCCEEEEECHHHHHHHHHTTTCCSSSEEEEESCC---
T ss_pred             HHHHHHhCCCEEEEEECCCCCCccHHHHHHHHHHHHHHh--cccceeEEEEECCCCHHHHHhcCCCcCCeEEEEeCCEEE
Confidence            3344443 45666555333 4999999988888776666  2477  888865543332344543556655555444444


Q ss_pred             HH
Q 015842          299 FK  300 (399)
Q Consensus       299 Yk  300 (399)
                      .+
T Consensus       105 ~~  106 (142)
T 2es7_A          105 GA  106 (142)
T ss_dssp             -C
T ss_pred             EE
Confidence            43

>3sei_A Caskin-1; SAM domain, protein-protein interaction, signaling protein; 2.40A {Homo sapiens} PDB: 3sen_A

Probab=90.54  E-value=0.093  Score=46.05  Aligned_cols=55  Identities=24%  Similarity=0.471  Sum_probs=50.2

Q ss_pred             hHHHHhhhccchhhhhhhHHHHHcCCChHHHhccCcccchhhhcccc-ccccccccc
Q 015842           35 DALEIRSYLHDRALMQYADIFEASGKSLPELLNLSTGDLSSQFGMKR-GHMARFKDR   90 (399)
Q Consensus        35 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~   90 (399)
                      +.-.+..||+.=||=||++.+...|.++..|..++..|| .+.|++. ||-.+++..
T Consensus         9 ~~~~V~~WL~~lgL~~Y~~~F~~~g~d~~~l~~lt~~DL-~~lGIt~~gHrkkil~a   64 (149)
T 3sei_A            9 SSEAVSQWLTAFQLQLYAPNFISAGYDLPTISRMTPEDL-TAIGVTKPGHRKKIAAE   64 (149)
T ss_dssp             HHHHHHHHHHTTTCGGGHHHHHHTTCCHHHHTTCCHHHH-HHTTCCSHHHHHHHHHH
T ss_pred             cHHHHHHHHHHCCcHHHHHHHHHcCCCHHHHccCCHHHH-HHcCCCCHHHHHHHHHH
Confidence            456789999999999999999999999999999999999 6999987 999998763

>2yan_A Glutaredoxin-3; oxidoreductase; HET: GSH; 1.90A {Homo sapiens}

Probab=90.37  E-value=0.16  Score=40.64  Aligned_cols=31  Identities=13%  Similarity=0.175  Sum_probs=20.9

Q ss_pred             chhhccCCCEEEEeecC----CCCcchHHHHHHHHh
Q 015842          223 ALELWRESPAVLLCIRR----PGCIMCRAEAHQLYA  254 (399)
Q Consensus       223 LsdL~~~~pvVLvFyRg----~gCP~Cr~el~~L~e  254 (399)
                      +.++.+..+++| |+.+    .|||+|+....-|.+
T Consensus        10 ~~~~i~~~~vvv-f~~g~~~~~~C~~C~~~~~~L~~   44 (105)
T 2yan_A           10 LKVLTNKASVML-FMKGNKQEAKCGFSKQILEILNS   44 (105)
T ss_dssp             HHHHHTSSSEEE-EESBCSSSBCTTHHHHHHHHHHH
T ss_pred             HHHHhccCCEEE-EEecCCCCCCCccHHHHHHHHHH
Confidence            456666667554 6663    899999876655544

>3f8u_A Protein disulfide-isomerase A3ERP57; endoplasmic reticulum, glycoprotein, immunoglobulin domain, microsome, protein disulfide isomerase, thioredoxin-like FO like domain; HET: NAG; 2.60A {Homo sapiens} PDB: 2dmm_A 2alb_A

Probab=90.35  E-value=0.35  Score=48.26  Aligned_cols=64  Identities=11%  Similarity=0.029  Sum_probs=43.3

Q ss_pred             chhhccCC---CEEEEeecCCCCcchHHHHHHHHhccchhhhcCCeEEEEecCChhhHHhhhcCCCCC
Q 015842          223 ALELWRES---PAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLHEYIESEVKDFWPRYWG  287 (399)
Q Consensus       223 LsdL~~~~---pvVLvFyRg~gCP~Cr~el~~L~e~~pef~alGV~LVaIspE~~e~~ik~F~~~~l~  287 (399)
                      +.+++.+.   ..+|+.|-..||+.|+.....+.++..++... +.++.|-.+......+.|.-..+|
T Consensus        11 f~~~i~~~~~~~~~lv~F~a~wC~~C~~~~p~~~~~a~~~~~~-v~~~~vd~~~~~~l~~~~~v~~~P   77 (481)
T 3f8u_A           11 FESRISDTGSAGLMLVEFFAPWCGHAKRLAPEYEAAATRLKGI-VPLAKVDCTANTNTCNKYGVSGYP   77 (481)
T ss_dssp             HHHHTTCCSSSSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTT-CCEEEEETTTCHHHHHHTTCCEES
T ss_pred             HHHHHHhCCCCCeEEEEEECCCCHHHHHhHHHHHHHHHHhcCc-eEEEEEECCCCHHHHHhcCCCCCC
Confidence            34444444   55666666899999999999998888777665 888888876654434444323334

>1sji_A Calsequestrin 2, calsequestrin, cardiac muscle isoform; glycoprotein, calcium-binding, muscle protein, metal binding protein; 2.40A {Canis lupus familiaris} PDB: 2vaf_A

Probab=90.20  E-value=0.22  Score=47.95  Aligned_cols=64  Identities=11%  Similarity=-0.004  Sum_probs=37.7

Q ss_pred             chhhccCCCEEEEeecCCCCcchHHHHHH-------HHhccchhhhcCCeEEEEecCChhhHHhhhcCCCCC
Q 015842          223 ALELWRESPAVLLCIRRPGCIMCRAEAHQ-------LYAKKPIFDALGIQLFAVLHEYIESEVKDFWPRYWG  287 (399)
Q Consensus       223 LsdL~~~~pvVLvFyRg~gCP~Cr~el~~-------L~e~~pef~alGV~LVaIspE~~e~~ik~F~~~~l~  287 (399)
                      +.++..+++.+|+.|--.||+ |+..+-.       +.++..+++..++.++.|-.+......+.|.-..+|
T Consensus        21 f~~~i~~~~~~lV~F~a~wC~-c~~~~p~~~~~~~~~~~~a~~~~~~~v~~~~Vd~~~~~~l~~~~~v~~~P   91 (350)
T 1sji_A           21 FKQVLKKYDVLCLYYHESVSS-DKVAQKQFQLKEIVLELVAQVLEHKDIGFVMVDAKKEAKLAKKLGFDEEG   91 (350)
T ss_dssp             HHHHHTTCSEEEEEEECCSCS-SSTTSHHHHHHHHHHHHHHHHGGGSSEEEEEEETTTTHHHHHHHTCCSTT
T ss_pred             HHHHHhhCCeEEEEEECCCCc-chhhCchhhhhhHHHHHHHHHHhhcCcEEEEEeCCCCHHHHHhcCCCccc
Confidence            344455545555555589999 9766444       445555555557888888776554434445423334

>1ilo_A Conserved hypothetical protein MTH895; beta-alpha-beta-alpha-beta-BETA-alpha motif, structural genomics, PSI; NMR {Methanothermobacterthermautotrophicus str} SCOP: c.47.1.1

Probab=90.04  E-value=0.63  Score=33.80  Aligned_cols=54  Identities=9%  Similarity=0.137  Sum_probs=32.5

Q ss_pred             EEEeecCCCCcchHHHHHHHHhccchhhhcCCeEEEEecCChhhHHhhhcCCCCCceeE
Q 015842          233 VLLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLHEYIESEVKDFWPRYWGGVVV  291 (399)
Q Consensus       233 VLvFyRg~gCP~Cr~el~~L~e~~pef~alGV~LVaIspE~~e~~ik~F~~~~l~f~VL  291 (399)
                      .|.||- .|||.|+.....|.++..++.. .+.++.|-  ..+ ..+.|.-...|--++
T Consensus         3 ~v~f~a-~wC~~C~~~~~~l~~~~~~~~~-~~~~~~v~--~~~-~~~~~~v~~~Pt~~~   56 (77)
T 1ilo_A            3 KIQIYG-TGCANCQMLEKNAREAVKELGI-DAEFEKIK--EMD-QILEAGLTALPGLAV   56 (77)
T ss_dssp             EEEEEC-SSSSTTHHHHHHHHHHHHHTTC-CEEEEEEC--SHH-HHHHHTCSSSSCEEE
T ss_pred             EEEEEc-CCChhHHHHHHHHHHHHHHcCC-ceEEEEec--CHH-HHHHCCCCcCCEEEE
Confidence            456666 5999999999888776655432 35555554  222 234443345555455

>2qkq_A Ephrin type-B receptor 4; ATP-binding, glycoprotein, kinase, membrane, nucleotide- binding, phosphorylation, repeat, signal, transferase; 2.10A {Homo sapiens}

Probab=89.92  E-value=0.077  Score=41.90  Aligned_cols=51  Identities=24%  Similarity=0.441  Sum_probs=46.4

Q ss_pred             HHhhhccchhhhhhhHHHHHcC-CChHHHhccCcccchhhhccc-ccccccccc
Q 015842           38 EIRSYLHDRALMQYADIFEASG-KSLPELLNLSTGDLSSQFGMK-RGHMARFKD   89 (399)
Q Consensus        38 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~   89 (399)
                      ++..||+.-+|-||++.+++.| .++..|+.++..||.. .|+. .||-.|.+.
T Consensus        17 ~V~~WL~~lgL~~Y~~~F~~~~~~~~~~l~~lt~~dL~~-lGI~~~GhrkkIl~   69 (83)
T 2qkq_A           17 SVGEWLRAIKMGRYEESFAAAGFGSFELVSQISAEDLLR-IGVTLAGHQKKILA   69 (83)
T ss_dssp             SHHHHHHHTTCGGGHHHHHHTTCCSHHHHTTCCHHHHHH-HTCCCHHHHHHHHH
T ss_pred             hHHHHHHHCCCHHHHHHHHHcCCCcHHHHhhCCHHHHHH-CCCCCHHHHHHHHH
Confidence            5678999999999999999999 8999999999999965 8998 899888764

>1ucv_A Ephrin type-A receptor 8; receptor oligomerization, developmental regulation, tyrosine kinase, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: a.60.1.2

Probab=89.87  E-value=0.087  Score=41.52  Aligned_cols=51  Identities=25%  Similarity=0.480  Sum_probs=45.6

Q ss_pred             HHhhhccchhhhhhhHHHHHcCCC-hHHHhccCcccchhhhcccc-cccccccc
Q 015842           38 EIRSYLHDRALMQYADIFEASGKS-LPELLNLSTGDLSSQFGMKR-GHMARFKD   89 (399)
Q Consensus        38 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~   89 (399)
                      .+..||+.-+|-||++.+++.|.. +..|+.++..||. +-|+.. ||-.|.+.
T Consensus         9 ~V~~WL~~lgL~~Y~~~F~~~~~d~~~~l~~lt~~DL~-~lGI~~~GhrkkIl~   61 (81)
T 1ucv_A            9 TVGDWLDSIRMGRYRDHFAAGGYSSLGMVLRMNAQDVR-ALGITLMGHQKKILG   61 (81)
T ss_dssp             BHHHHHHHTTCGGGHHHHHHTTCCBHHHHTTCCHHHHH-HHTCCCHHHHHHHHH
T ss_pred             hHHHHHHHCCCHHHHHHHHHcCCChHHHHHHcCHHHHH-hCCCCChhHHHHHHH
Confidence            456799999999999999999999 9999999999995 799987 99887763

>1kw4_A Polyhomeotic; SAM domain, polycomb group, polymer, DNA binding protein; 1.75A {Drosophila melanogaster} SCOP: a.60.1.2 PDB: 1pk1_A

Probab=89.85  E-value=0.094  Score=42.35  Aligned_cols=55  Identities=20%  Similarity=0.312  Sum_probs=48.7

Q ss_pred             hHHHHhhhccch-hhhhhhHHHHHcCCChHHHhccCcccchhhhcccccccccccc
Q 015842           35 DALEIRSYLHDR-ALMQYADIFEASGKSLPELLNLSTGDLSSQFGMKRGHMARFKD   89 (399)
Q Consensus        35 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   89 (399)
                      ..=++..||..- |+-+|++.++...++-.-|+.++..||-+..|+|-||.-+.+.
T Consensus        18 s~edV~~wL~~l~gl~~y~~~F~~~~IdG~~LL~Lt~~dL~k~lgIklG~r~kI~~   73 (89)
T 1kw4_A           18 SVDDVSNFIRELPGCQDYVDDFIQQEIDGQALLRLKEKHLVNAMGMKLGPALKIVA   73 (89)
T ss_dssp             CHHHHHHHHHTSTTCGGGHHHHHHTTCCHHHHHHCCHHHHHTTTCCCHHHHHHHHH
T ss_pred             CHHHHHHHHHHCcChHHHHHHHHHhCccHHHHhcCCHHHHHHHcCCCHHHHHHHHH
Confidence            455778899887 9999999999999999999999999998899999999776543

>2f3n_A SH3 and multiple ankyrin repeat domains 3; postsynaptic density, SAM domain, shank, scaffolding protein, structural protein; 2.10A {Rattus norvegicus} SCOP: a.60.1.2 PDB: 2f44_A

Probab=89.56  E-value=0.097  Score=40.63  Aligned_cols=52  Identities=21%  Similarity=0.344  Sum_probs=46.3

Q ss_pred             HHHhhhccchhhhhhhHHHHHcCCChHHHhccCcccchhhhccc-ccccccccc
Q 015842           37 LEIRSYLHDRALMQYADIFEASGKSLPELLNLSTGDLSSQFGMK-RGHMARFKD   89 (399)
Q Consensus        37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~   89 (399)
                      -++..||..-||=+|++.++..+.+-..|+.++..|| .+.|++ -||-.+.+.
T Consensus         8 ~~V~~WL~~lgl~~Y~~~F~~~~idg~~Ll~Lt~~dL-~~lGI~~~Ghr~kIl~   60 (76)
T 2f3n_A            8 FDVGDWLESIHLGEHRDRFEDHEIEGAHLPALTKEDF-VELGVTRVGHRENIER   60 (76)
T ss_dssp             HHHHHHHHHTTCGGGHHHHHHTTCCGGGGGGCCHHHH-HHTTCCCHHHHHHHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHcCCCHHHHccCCHHHH-HHcCCCChhHHHHHHH
Confidence            3567799999999999999999999999999999999 799998 799877654

>1a0r_P Phosducin, MEKA, PP33; transducin, beta-gamma, signal transduction, regulation, phosphorylation, G proteins, thioredoxin, vision; HET: FAR; 2.80A {Bos taurus} SCOP: c.47.1.6 PDB: 1b9y_C 1b9x_C

Probab=89.43  E-value=0.27  Score=46.35  Aligned_cols=72  Identities=13%  Similarity=0.106  Sum_probs=43.2

Q ss_pred             CCCEEEEeecCCCCcchHHHHHHHHhccchhhhcCCeEEEEecCChhhHHhhhcCCCCCceeEeccchHHHHHhCC
Q 015842          229 ESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLHEYIESEVKDFWPRYWGGVVVYDQGMEFFKALGG  304 (399)
Q Consensus       229 ~~pvVLvFyRg~gCP~Cr~el~~L~e~~pef~alGV~LVaIspE~~e~~ik~F~~~~l~f~VLsDp~r~lYkaLGl  304 (399)
                      +++|||.|| ..||+.|+.....|.++..++.  ++.++.|-.+..+ ....|.-..+|--++.+.+..+.+-.|+
T Consensus       133 ~k~VvV~Fy-a~wC~~Ck~l~p~l~~La~~~~--~v~f~kVd~d~~~-l~~~~~I~~~PTll~~~~G~~v~~~vG~  204 (245)
T 1a0r_P          133 ITTIVVHIY-EDGIKGCDALNSSLICLAAEYP--MVKFCKIKASNTG-AGDRFSSDVLPTLLVYKGGELLSNFISV  204 (245)
T ss_dssp             TCEEEEEEE-CTTSTTHHHHHHHHHHHHHHCT--TSEEEEEEHHHHC-CTTSSCTTTCSEEEEEETTEEEEEETTG
T ss_pred             CCEEEEEEE-CCCChHHHHHHHHHHHHHHHCC--CCEEEEEeCCcHH-HHHHCCCCCCCEEEEEECCEEEEEEeCC
Confidence            345555555 7999999999998888766663  5888888754321 1233433455544454544444433343

>2e8n_A Ephrin type-A receptor 2; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=89.33  E-value=0.13  Score=41.17  Aligned_cols=51  Identities=22%  Similarity=0.532  Sum_probs=45.6

Q ss_pred             HHhhhccchhhhhhhHHHHHcCCC-hHHHhccCcccchhhhcccc-cccccccc
Q 015842           38 EIRSYLHDRALMQYADIFEASGKS-LPELLNLSTGDLSSQFGMKR-GHMARFKD   89 (399)
Q Consensus        38 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~   89 (399)
                      ++..||+.-+|-||++.+++.|.+ +..|+.++..||- +-|+.. ||-.|.+.
T Consensus        14 ~V~~WL~~lgL~~Y~~~F~~~~~~~~~~l~~lt~~dL~-~lGI~~~GhRkkIl~   66 (88)
T 2e8n_A           14 TVSEWLESIKMQQYTEHFMAAGYTAIEKVVQMTNDDVK-RIGVRLPGHQKRIAY   66 (88)
T ss_dssp             SHHHHHHHTTCGGGHHHHHHHTCSSHHHHTTSCTTHHH-HTTCCSHHHHHHHHH
T ss_pred             hHHHHHHHCCCHHHHHHHHHcCCChHHHHHhCCHHHHH-HCCCCChhHHHHHHH
Confidence            567799999999999999999999 9999999999995 689987 99887763

>3k1r_B Usher syndrome type-1G protein; protein-protein complex, alternative splicing, coiled coil, deafness, hearing, non-syndromic deafness, polymorphism; 2.30A {Homo sapiens}

Probab=88.97  E-value=0.11  Score=40.58  Aligned_cols=51  Identities=16%  Similarity=0.245  Sum_probs=44.8

Q ss_pred             HHHhhhccchhhhhhhHHHHHcCCChHHHhccCcccchhhhccccccccccc
Q 015842           37 LEIRSYLHDRALMQYADIFEASGKSLPELLNLSTGDLSSQFGMKRGHMARFK   88 (399)
Q Consensus        37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   88 (399)
                      -.+..||..-||-+|++.++..+.++..|..++..|| .+.|+.-||--+-+
T Consensus         3 ~~v~~wL~~lgL~~Y~~~F~~~~id~e~l~~lt~~DL-~~lGI~~G~RkkIl   53 (74)
T 3k1r_B            3 SPLETFLASLHMEDFAALLRQEKIDLEALMLCSDLDL-RSISVPLGPREKIL   53 (74)
T ss_dssp             CHHHHHHHTTTCGGGHHHHHHTTCCHHHHTTCCHHHH-HHTTCCHHHHHHHH
T ss_pred             chHHHHHHHCCCHHHHHHHHHcCcCHHHHhHCCHHHH-HHcCCCcchHHHHH
Confidence            3578899999999999999999999999999999999 57888888865543

>3hil_A Ephrin type-A receptor 1; ATP-binding, kinase, nucleotide-binding, transferase, tyrosine-protein kinase, signal, sterIle alpha motif; 2.00A {Homo sapiens} PDB: 3kka_A

Probab=88.90  E-value=0.11  Score=41.33  Aligned_cols=51  Identities=25%  Similarity=0.476  Sum_probs=45.3

Q ss_pred             HHHhhhccchhhhhhhHHHHHcCCC-hHHHhccCcccchhhhcccc-ccccccc
Q 015842           37 LEIRSYLHDRALMQYADIFEASGKS-LPELLNLSTGDLSSQFGMKR-GHMARFK   88 (399)
Q Consensus        37 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~   88 (399)
                      -.+..||..-+|=||.+.+++.|.+ +..|..++..|| .+.|... ||-.|.+
T Consensus        24 ~~V~~WL~~lgL~qY~~~F~~~g~~s~e~l~~lt~~DL-~~lGIt~~GHRkkIL   76 (82)
T 3hil_A           24 RTVSEWLESIRMKRYILHFHSAGLDTMECVLELTAEDL-TQMGITLPGHQKRIL   76 (82)
T ss_dssp             SSHHHHHHHTTCGGGHHHHHHTTCCSGGGGTTCCHHHH-HHTTCCCHHHHHHHH
T ss_pred             hHHHHHHHhCCHHHHHHHHHHcCCChHHHHhcCCHHHH-HHCCCCCHHHHHHHH
Confidence            3578899999999999999999998 999999999999 7889886 9977654

>1b0x_A Protein (EPHA4 receptor tyrosine kinase); protein interaction module, dimerization domain, transferase; 2.00A {Mus musculus} SCOP: a.60.1.2

Probab=88.80  E-value=0.073  Score=43.17  Aligned_cols=51  Identities=24%  Similarity=0.506  Sum_probs=45.4

Q ss_pred             HHHhhhccchhhhhhhHHHHHcCC-ChHHHhccCcccchhhhcccc-ccccccc
Q 015842           37 LEIRSYLHDRALMQYADIFEASGK-SLPELLNLSTGDLSSQFGMKR-GHMARFK   88 (399)
Q Consensus        37 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~~~~   88 (399)
                      -++..||+.-+|-||.+.+++.|. ++..|+.++..||- +-|+.. ||-.|.+
T Consensus        27 ~~V~~WL~~lgL~~Y~~~F~~~g~~~~~~l~~lt~~DL~-~lGI~~~GhrkkIl   79 (94)
T 1b0x_A           27 VSVGDWLQAIKMDRYKDNFTAAGYTTLEAVVHMSQDDLA-RIGITAITHQNKIL   79 (94)
T ss_dssp             CCHHHHHHHTTCGGGHHHHHHTTCCSHHHHTTCCHHHHH-HHTCCCHHHHHHHH
T ss_pred             hHHHHHHHHCCcHHHHHHHHHcCCCCHHHHhhCCHHHHH-HCCCCChhHHHHHH
Confidence            356779999999999999999999 89999999999995 689887 9987765

>3h93_A Thiol:disulfide interchange protein DSBA; disulfide bond, redox-active center, transcription regulator; HET: MSE GOL; 1.50A {Pseudomonas aeruginosa PAO1} SCOP: c.47.1.0

Probab=88.64  E-value=0.32  Score=42.41  Aligned_cols=31  Identities=13%  Similarity=0.125  Sum_probs=24.6

Q ss_pred             CCCEEEEeecCCCCcchHHHHHHHHhccchh
Q 015842          229 ESPAVLLCIRRPGCIMCRAEAHQLYAKKPIF  259 (399)
Q Consensus       229 ~~pvVLvFyRg~gCP~Cr~el~~L~e~~pef  259 (399)
                      ++|++|+.|=.+|||+|+.....|.++..+.
T Consensus        24 ~~~~~i~~f~d~~Cp~C~~~~~~l~~l~~~~   54 (192)
T 3h93_A           24 PGKIEVVELFWYGCPHCYAFEPTIVPWSEKL   54 (192)
T ss_dssp             TTSEEEEEEECTTCHHHHHHHHHHHHHHHTC
T ss_pred             CCCCEEEEEECCCChhHHHhhHHHHHHHHhC
Confidence            5778888888999999999988776654443

>3t58_A Sulfhydryl oxidase 1; oxidoreductase; HET: FAD; 2.40A {Mus musculus} PDB: 3t59_A*

Probab=88.62  E-value=0.65  Score=48.19  Aligned_cols=67  Identities=12%  Similarity=-0.045  Sum_probs=45.9

Q ss_pred             cCCCEEEEeecCCCCcchHHHHHHHHhccchhhh--cCCeEEEEecCC--hhhHHhhhcCCCCCceeEecc
Q 015842          228 RESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDA--LGIQLFAVLHEY--IESEVKDFWPRYWGGVVVYDQ  294 (399)
Q Consensus       228 ~~~pvVLvFyRg~gCP~Cr~el~~L~e~~pef~a--lGV~LVaIspE~--~e~~ik~F~~~~l~f~VLsDp  294 (399)
                      +.+..||+.|--.||+.|+...-.|.++..++..  .++.++.|-.+.  .....+.|.-..+|--++.++
T Consensus        28 ~~~k~vlV~FyA~WC~pCk~~~P~l~~la~~~~~~~~~v~~~~VD~d~d~~~~l~~~~~V~~~PTl~~f~~   98 (519)
T 3t58_A           28 GSSSAWAVEFFASWCGHAIAFAPTWKELANDVKDWRPALNLAVLDCAEETNSAVCREFNIAGFPTVRFFQA   98 (519)
T ss_dssp             SCSSEEEEEEECTTSHHHHHHHHHHHHHHHHHGGGTTTEEEEEEETTSGGGHHHHHHTTCCSBSEEEEECT
T ss_pred             hCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhhCcCCcEEEEEEECCccccHHHHHHcCCcccCEEEEEcC
Confidence            4444555555678999999999999998888875  368888888743  222244454356666677765

>3sei_A Caskin-1; SAM domain, protein-protein interaction, signaling protein; 2.40A {Homo sapiens} PDB: 3sen_A

Probab=88.16  E-value=0.13  Score=45.09  Aligned_cols=51  Identities=20%  Similarity=0.372  Sum_probs=44.9

Q ss_pred             HHhhhccchhhhhhhHHHHHcCCC-hHHHhccCcccchhhhccc-ccccccccc
Q 015842           38 EIRSYLHDRALMQYADIFEASGKS-LPELLNLSTGDLSSQFGMK-RGHMARFKD   89 (399)
Q Consensus        38 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~~   89 (399)
                      .+..||.+=||=||.+.+.+.|.+ +..|..++..|| .+-|+. -||-.|-+.
T Consensus        81 ~v~~WL~~igL~qY~~~F~~~g~d~~~~l~~lt~~dL-~~lGI~~~gHr~kIl~  133 (149)
T 3sei_A           81 NLAVWLSMIGLAQYYKVLVDNGYENIDFITDITWEDL-QEIGITKLGHQKKLML  133 (149)
T ss_dssp             CHHHHHHHTTCGGGHHHHHHTTCCSHHHHTTCCHHHH-HHHTCCCHHHHHHHHH
T ss_pred             cHHHHHHHcCchhhHHHHHHCCCchHHHHhhCCHHHH-HHCCCCCHHHHHHHHH
Confidence            477899999999999999999998 999999999999 789996 689877553

>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus}

Probab=87.89  E-value=0.76  Score=48.91  Aligned_cols=66  Identities=9%  Similarity=-0.042  Sum_probs=43.5

Q ss_pred             CCCEEEEeecCCCCcchHHHHHHHHhccchhhhcCCeEEEEecCChhhHHhhhcCCCCCceeEeccch
Q 015842          229 ESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLHEYIESEVKDFWPRYWGGVVVYDQGM  296 (399)
Q Consensus       229 ~~pvVLvFyRg~gCP~Cr~el~~L~e~~pef~alGV~LVaIspE~~e~~ik~F~~~~l~f~VLsDp~r  296 (399)
                      ++++||.|+ -.||+.|+.....|.++..+++. ++.++.|-.+......+.|.-..+|--++...++
T Consensus       675 ~~~v~v~F~-a~wC~~C~~~~p~~~~la~~~~~-~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~  740 (780)
T 3apo_A          675 KTHWVVDFY-APWSGPSQNFAPEFELLARMIKG-KVRAGKVDCQAYPQTCQKAGIKAYPSVKLYQYER  740 (780)
T ss_dssp             SSCEEEEEE-CTTCHHHHHHHHHHHHHHHHHTT-TCEEEEEETTTCHHHHHHTTCCSSSEEEEEEEET
T ss_pred             CCeEEEEEE-CCCCHHHHHHHHHHHHHHHHhcC-CceEEEEECCCCHHHHHhcCCCcCCEEEEEcCCC
Confidence            456777666 79999999999888887766654 5888888765544333444434555544443333

>3bq7_A Diacylglycerol kinase delta; SAM domain, polymerization domain, alternative splicing, cytoplasm, membrane, metal-binding, phorbol-ester binding; 2.90A {Homo sapiens}

Probab=87.89  E-value=0.16  Score=39.83  Aligned_cols=53  Identities=34%  Similarity=0.523  Sum_probs=45.9

Q ss_pred             HHHHhhhccchhhhhhhHHHHHcCCChHHHhccCcccchhhhcc-cccccccccc
Q 015842           36 ALEIRSYLHDRALMQYADIFEASGKSLPELLNLSTGDLSSQFGM-KRGHMARFKD   89 (399)
Q Consensus        36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~   89 (399)
                      .-++..||..-||=+|++.++..+.+-.+|+.++..||- +.|+ +-||.-+.+.
T Consensus        12 ~~~V~~WL~~lgl~~Y~~~F~~~~idg~~Ll~Lt~~dL~-~lGI~~~ghr~kIl~   65 (81)
T 3bq7_A           12 TEEVAAWLEHLSLCEYKDIFTRHDIRGSGLLHLERRDLK-DLGVTKVGHMKRILC   65 (81)
T ss_dssp             HHHHHHHHHHTTCGGGHHHHHHTTCCHHHHTTCCHHHHH-HTTCCCHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHcCCCHHHHCcCCHHHHh-HcCCCCHHHHHHHHH
Confidence            346778999999999999999999999999999999995 5999 5688777653

>1v58_A Thiol:disulfide interchange protein DSBG; reduced DSBG, redox protein, protein disulfide isomerase, thioredoxin fold; 1.70A {Escherichia coli} SCOP: c.47.1.9 d.17.3.1 PDB: 1v57_A 2h0i_A 2h0h_A 2h0g_A 2iy2_A

Probab=87.88  E-value=0.4  Score=44.20  Aligned_cols=38  Identities=18%  Similarity=0.300  Sum_probs=28.1

Q ss_pred             CCCEEEEeecCCCCcchHHHHHHHHhccchhhhcCCeEEEE
Q 015842          229 ESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAV  269 (399)
Q Consensus       229 ~~pvVLvFyRg~gCP~Cr~el~~L~e~~pef~alGV~LVaI  269 (399)
                      +.|++|+.|--+|||||+.....|.+...   +-+++++.+
T Consensus        96 ~ak~~v~~F~D~~Cp~C~~~~~~l~~~~~---~g~v~v~~~  133 (241)
T 1v58_A           96 DAPVIVYVFADPFCPYCKQFWQQARPWVD---SGKVQLRTL  133 (241)
T ss_dssp             TCSEEEEEEECTTCHHHHHHHHHHHHHHH---TTSEEEEEE
T ss_pred             CCCeEEEEEECCCChhHHHHHHHHHHHHh---CCcEEEEEE
Confidence            56888888999999999998888776432   224666544

>2gle_A Neurabin-1; SAM domain, scaffold, protein protein interaction, protein binding; NMR {Rattus norvegicus}

Probab=87.55  E-value=0.13  Score=39.36  Aligned_cols=50  Identities=30%  Similarity=0.381  Sum_probs=44.6

Q ss_pred             HHhhhccchhhhhhhHHHHHcCCChHHHhccCcccchhhhccc-cccccccc
Q 015842           38 EIRSYLHDRALMQYADIFEASGKSLPELLNLSTGDLSSQFGMK-RGHMARFK   88 (399)
Q Consensus        38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~   88 (399)
                      ++..||..-||=+|++.+...+.+-..|+.++..|| .+.|++ -||..+.+
T Consensus        11 ~V~~WL~~~gl~~y~~~F~~~~i~g~~Ll~l~~~dL-~~lGI~~~g~r~kil   61 (74)
T 2gle_A           11 QVSHWLVGLSLDQYVSEFSAQNISGEQLLQLDGNKL-KALGMTSSQDRALVK   61 (74)
T ss_dssp             GGHHHHHHTTTHHHHHHHTTTTCCHHHHHTCCHHHH-HTTTCCCHHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHcCCCHHHHhhCCHHHH-HHcCCCCHHHHHHHH
Confidence            467899999999999999999999999999999998 579998 78877765

>3c1r_A Glutaredoxin-1; oxidized form, oxidoreductase, cytoplasm, electron transport, redox-active center, transport; HET: MES; 2.00A {Saccharomyces cerevisiae} PDB: 3c1s_A* 2jac_A*

Probab=87.53  E-value=0.2  Score=41.27  Aligned_cols=24  Identities=21%  Similarity=0.371  Sum_probs=16.4

Q ss_pred             chhhccCCCEEEEeecCCCCcchHHH
Q 015842          223 ALELWRESPAVLLCIRRPGCIMCRAE  248 (399)
Q Consensus       223 LsdL~~~~pvVLvFyRg~gCP~Cr~e  248 (399)
                      +.++++..+++  +|-..|||+|+..
T Consensus        18 ~~~~i~~~~Vv--vf~~~~Cp~C~~a   41 (118)
T 3c1r_A           18 VKDLIAENEIF--VASKTYCPYCHAA   41 (118)
T ss_dssp             HHHHHHHSSEE--EEECSSCHHHHHH
T ss_pred             HHHHHccCcEE--EEEcCCCcCHHHH
Confidence            45566655544  3556999999976

>2k8s_A Thioredoxin; dimer, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Nitrosomonas europaea}

Probab=87.48  E-value=0.42  Score=35.90  Aligned_cols=32  Identities=13%  Similarity=0.175  Sum_probs=21.3

Q ss_pred             EeecCCCCcchHHHHHHHHhccchhhhcCCeEEEE
Q 015842          235 LCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAV  269 (399)
Q Consensus       235 vFyRg~gCP~Cr~el~~L~e~~pef~alGV~LVaI  269 (399)
                      .+|-..|||+|+.....|.++..+   .|+.+..+
T Consensus         5 ~~f~~~~C~~C~~~~~~l~~~~~~---~~~~~~~~   36 (80)
T 2k8s_A            5 AIFYHAGCPVCVSAEQAVANAIDP---SKYTVEIV   36 (80)
T ss_dssp             EEEEECSCHHHHHHHHHHHHHSCT---TTEEEEEE
T ss_pred             EEEeCCCCCchHHHHHHHHHHHHh---cCCeEEEE
Confidence            344468999999998888776543   35554333

>1ego_A Glutaredoxin; electron transport; NMR {Escherichia coli} SCOP: c.47.1.1 PDB: 1egr_A 1grx_A* 1qfn_A

Probab=87.41  E-value=0.49  Score=35.30  Aligned_cols=35  Identities=17%  Similarity=0.082  Sum_probs=23.3

Q ss_pred             EEeecCCCCcchHHHHHHHHhccchhhhcCCeEEEEe
Q 015842          234 LLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVL  270 (399)
Q Consensus       234 LvFyRg~gCP~Cr~el~~L~e~~pef~alGV~LVaIs  270 (399)
                      |++|-..|||+|+.....|.++..+.  .|+.++.|-
T Consensus         3 v~~f~~~~C~~C~~~~~~l~~l~~~~--~~i~~~~vd   37 (85)
T 1ego_A            3 TVIFGRSGCPYCVRAKDLAEKLSNER--DDFQYQYVD   37 (85)
T ss_dssp             EEEECCTTSTHHHHHHHHHHHHHHHH--SSCEEEEEC
T ss_pred             EEEEeCCCCCCHHHHHHHHHHHHhcC--CCceEEEEe
Confidence            34556789999998877777654322  466666553

>3uem_A Protein disulfide-isomerase; thioredoxin-like domain, chaper; 2.29A {Homo sapiens} PDB: 2k18_A 1x5c_A 1bjx_A 2bjx_A

Probab=87.38  E-value=0.52  Score=45.01  Aligned_cols=65  Identities=14%  Similarity=0.121  Sum_probs=39.2

Q ss_pred             CCCEEEEeecCCCCcchHHHHHHHHhccchhhhc-CCeEEEEecCChhhHHhhhcCCCCCceeEeccc
Q 015842          229 ESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDAL-GIQLFAVLHEYIESEVKDFWPRYWGGVVVYDQG  295 (399)
Q Consensus       229 ~~pvVLvFyRg~gCP~Cr~el~~L~e~~pef~al-GV~LVaIspE~~e~~ik~F~~~~l~f~VLsDp~  295 (399)
                      .++.+++.|--.||+.|+.....|.++..+++.. ++.++.|-.....  .+.|.-..+|--++.+.+
T Consensus       266 ~~k~~lv~f~a~wC~~C~~~~p~~~~la~~~~~~~~v~~~~vd~~~~~--~~~~~v~~~Pt~~~~~~~  331 (361)
T 3uem_A          266 EKKNVFVEFYAPWCGHCKQLAPIWDKLGETYKDHENIVIAKMDSTANE--VEAVKVHSFPTLKFFPAS  331 (361)
T ss_dssp             TTCEEEEEEECTTCHHHHHHHHHHHHHHHHTTTCSSEEEEEEETTTCB--CSSCCCCSSSEEEEECSS
T ss_pred             CCCcEEEEEecCcCHhHHHHHHHHHHHHHHhccCCcEEEEEEECCccc--hhhcCCcccCeEEEEECC
Confidence            3444455555899999999999998887777654 4555555433322  233432455555666443

>1h75_A Glutaredoxin-like protein NRDH; electron transport, thioredoxin, redox protein; 1.7A {Escherichia coli} SCOP: c.47.1.1

Probab=87.36  E-value=0.93  Score=33.56  Aligned_cols=32  Identities=16%  Similarity=0.373  Sum_probs=21.4

Q ss_pred             EEeecCCCCcchHHHHHHHHhccchhhhcCCeEEEEecC
Q 015842          234 LLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLHE  272 (399)
Q Consensus       234 LvFyRg~gCP~Cr~el~~L~e~~pef~alGV~LVaIspE  272 (399)
                      |++|-..|||+|+.....|.       +.|+.+..|--+
T Consensus         3 v~~f~~~~C~~C~~~~~~l~-------~~~i~~~~vdi~   34 (81)
T 1h75_A            3 ITIYTRNDCVQCHATKRAME-------NRGFDFEMINVD   34 (81)
T ss_dssp             EEEEECTTCHHHHHHHHHHH-------HTTCCCEEEETT
T ss_pred             EEEEcCCCChhHHHHHHHHH-------HCCCCeEEEECC
Confidence            34566789999998665554       356776666543

>1kte_A Thioltransferase; redox-active center, electron transport, acetylation; 2.20A {Sus scrofa} SCOP: c.47.1.1 PDB: 1jhb_A 1b4q_A*

Probab=85.72  E-value=0.5  Score=36.98  Aligned_cols=31  Identities=19%  Similarity=0.344  Sum_probs=20.0

Q ss_pred             chhhccCCCEEEEeecCCCCcchHHHHHHHHhc
Q 015842          223 ALELWRESPAVLLCIRRPGCIMCRAEAHQLYAK  255 (399)
Q Consensus       223 LsdL~~~~pvVLvFyRg~gCP~Cr~el~~L~e~  255 (399)
                      +.++.+..+++ + |-..|||+|+.....|.+.
T Consensus         5 ~~~~i~~~~v~-~-f~~~~C~~C~~~~~~L~~~   35 (105)
T 1kte_A            5 VNSKIQPGKVV-V-FIKPTCPFCRKTQELLSQL   35 (105)
T ss_dssp             HHHHCCTTCEE-E-EECSSCHHHHHHHHHHHHS
T ss_pred             HHhhcccCCEE-E-EEcCCCHhHHHHHHHHHHc
Confidence            34555655533 3 4469999999876666553

>2rem_A Disulfide oxidoreductase; disulfide oxidoreductase, DSBA, thioredoxin fold, redox- active center; 1.90A {Xylella fastidiosa}

Probab=85.68  E-value=0.58  Score=40.48  Aligned_cols=40  Identities=15%  Similarity=0.081  Sum_probs=27.1

Q ss_pred             CCCEEEEeecCCCCcchHHHHHHHHhccchhhhcCCeEEEE
Q 015842          229 ESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAV  269 (399)
Q Consensus       229 ~~pvVLvFyRg~gCP~Cr~el~~L~e~~pef~alGV~LVaI  269 (399)
                      ++++.|+.|=.++||+|......|.++..+... .+.++.+
T Consensus        24 ~a~v~i~~f~d~~Cp~C~~~~~~l~~l~~~~~~-~v~~~~~   63 (193)
T 2rem_A           24 AGKIEVVEIFGYTCPHCAHFDSKLQAWGARQAK-DVRFTLV   63 (193)
T ss_dssp             TTCEEEEEEECTTCHHHHHHHHHHHHHHHTSCT-TEEEEEE
T ss_pred             CCCeEEEEEECCCChhHhhhhHHHHHHHHhcCC-ceEEEEe
Confidence            456777778899999999988888765444321 3444433

>2eao_A Ephrin type-B receptor 1; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=85.55  E-value=0.2  Score=40.94  Aligned_cols=52  Identities=23%  Similarity=0.468  Sum_probs=45.8

Q ss_pred             HHHhhhccchhhhhhhHHHHHcCCC-hHHHhccCcccchhhhcccc-cccccccc
Q 015842           37 LEIRSYLHDRALMQYADIFEASGKS-LPELLNLSTGDLSSQFGMKR-GHMARFKD   89 (399)
Q Consensus        37 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~   89 (399)
                      -++..||+.-+|-||++.+++.|.+ +..|+.++..||- +.|+.. ||-.|.+.
T Consensus        23 ~~V~~WL~~lgL~~Y~~~F~~~~~~~~~~L~~lt~~DL~-~lGI~~~GhRkkIl~   76 (99)
T 2eao_A           23 TTVDDWLSAIKMVQYRDSFLTAGFTSLQLVTQMTSEDLL-RIGITLAGHQKKILN   76 (99)
T ss_dssp             CBHHHHHHTTTCGGGHHHHHHHTCCBHHHHTTCCHHHHH-HHTCCCHHHHHHHHH
T ss_pred             HHHHHHHHHCCcHHHHHHHHHcCCChHHHHhhCCHHHHH-HCCCCChhHHHHHHH
Confidence            3677799999999999999999999 9999999999996 589986 99877653

>3dml_A Putative uncharacterized protein; thioredoxin, oxidoreductase, sulfur oxidation, thiol- disulfide oxidoreductase; HET: MSE; 1.90A {Paracoccus denitrificans} PDB: 3d4t_A*

Probab=85.54  E-value=0.45  Score=40.08  Aligned_cols=27  Identities=22%  Similarity=0.577  Sum_probs=18.2

Q ss_pred             CCEEEEeecCCCCcchHHHHHHHHhccc
Q 015842          230 SPAVLLCIRRPGCIMCRAEAHQLYAKKP  257 (399)
Q Consensus       230 ~pvVLvFyRg~gCP~Cr~el~~L~e~~p  257 (399)
                      +++||.|+ -.||++|+..-..+...++
T Consensus        19 ~~~LV~F~-A~wC~~Ck~~~~~i~~~~~   45 (116)
T 3dml_A           19 ELRLLMFE-QPGCLYCARWDAEIAPQYP   45 (116)
T ss_dssp             CEEEEEEE-CTTCHHHHHHHHHTTTTGG
T ss_pred             CCEEEEEE-CCCCHHHHHHHHHHHhhHH
Confidence            45666665 5699999988765554433

>1r7h_A NRDH-redoxin; thioredoxin, glutaredoxin, redox protein, domain swapping, electron transport; 2.69A {Corynebacterium ammoniagenes} SCOP: c.47.1.1

Probab=85.35  E-value=1.5  Score=31.65  Aligned_cols=32  Identities=22%  Similarity=0.424  Sum_probs=21.2

Q ss_pred             EEeecCCCCcchHHHHHHHHhccchhhhcCCeEEEEecC
Q 015842          234 LLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLHE  272 (399)
Q Consensus       234 LvFyRg~gCP~Cr~el~~L~e~~pef~alGV~LVaIspE  272 (399)
                      |.+|-..|||+|+.....|.+       .|+....|--+
T Consensus         3 i~~y~~~~C~~C~~~~~~l~~-------~~i~~~~~di~   34 (75)
T 1r7h_A            3 ITLYTKPACVQCTATKKALDR-------AGLAYNTVDIS   34 (75)
T ss_dssp             EEEEECTTCHHHHHHHHHHHH-------TTCCCEEEETT
T ss_pred             EEEEeCCCChHHHHHHHHHHH-------cCCCcEEEECC
Confidence            345667899999987666654       46666555433

>3h8m_A Ephrin type-A receptor 7; SAM domain, kinase,structural genomics, structural genomics consortium, SGC, alternative splicing, ATP-binding; 2.10A {Homo sapiens}

Probab=85.30  E-value=0.23  Score=40.15  Aligned_cols=51  Identities=22%  Similarity=0.471  Sum_probs=44.8

Q ss_pred             HHhhhccchhhhhhhHHHHHcCCC-hHHHhccCcccchhhhcccc-cccccccc
Q 015842           38 EIRSYLHDRALMQYADIFEASGKS-LPELLNLSTGDLSSQFGMKR-GHMARFKD   89 (399)
Q Consensus        38 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~   89 (399)
                      .+..||..-+|-||.+.++..|.+ +..|..++..|| .+.|... ||-.|.+.
T Consensus        27 ~V~~WL~~lgL~qY~~~F~~~g~d~~e~l~~lt~~DL-~~lGIt~~GHRkkIL~   79 (90)
T 3h8m_A           27 SVGEWLQAIKMERYKDNFTAAGYNSLESVARMTIEDV-MSLGITLVGHQKKIMS   79 (90)
T ss_dssp             SHHHHHHHTTCGGGHHHHHHTTCCSHHHHHTCCHHHH-HHTTCCCHHHHHHHHH
T ss_pred             HHHHHHHHCChHHHHHHHHHcCCChHHHHhhCCHHHH-HHCCCCCHHHHHHHHH
Confidence            567899999999999999999999 999999999999 4689886 99777653

>3iv4_A Putative oxidoreductase; APC23140, meticillin-resistant staphylococcus aureus, oxidor thioredoxin fold, structural genomics, PSI-2; HET: MSE; 1.50A {Staphylococcus aureus subsp}

Probab=84.86  E-value=0.51  Score=39.77  Aligned_cols=35  Identities=11%  Similarity=0.043  Sum_probs=27.7

Q ss_pred             chhhccCCCEEEEeecCCCCcchHHHHHHHHhccc
Q 015842          223 ALELWRESPAVLLCIRRPGCIMCRAEAHQLYAKKP  257 (399)
Q Consensus       223 LsdL~~~~pvVLvFyRg~gCP~Cr~el~~L~e~~p  257 (399)
                      +.++++..+.||+|+.-.|||.|+.....|.+...
T Consensus        17 f~~ii~~~~~vvi~khatwCgpc~~~~~~~e~~~~   51 (112)
T 3iv4_A           17 FEQVIEENKYVFVLKHSETCPISANAYDQFNKFLY   51 (112)
T ss_dssp             HHHHHHHCSEEEEEEECTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHhcCCCEEEEEECCcCHhHHHHHHHHHHHhc
Confidence            55666656678889999999999998888877543

>3bs5_B Connector enhancer of kinase suppressor of RAS 2; sterIle alpha motif, SAM domain, SAM domain dimer, SAM domain complex, cytoplasm, membrane; 2.00A {Homo sapiens}

Probab=84.45  E-value=0.36  Score=37.44  Aligned_cols=51  Identities=24%  Similarity=0.384  Sum_probs=43.6

Q ss_pred             HHHhhhccch--hhhhhhHHHHHcCCChHHHhccCcccchhhhccc-cccccccc
Q 015842           37 LEIRSYLHDR--ALMQYADIFEASGKSLPELLNLSTGDLSSQFGMK-RGHMARFK   88 (399)
Q Consensus        37 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~   88 (399)
                      -++..||..-  ||-+|++.+...+++-..|+.++..|| .+.|++ -||-.+.+
T Consensus        10 ~~V~~WL~~l~~gl~~Y~~~F~~~~i~G~~Ll~L~~~dL-~~lGI~~~ghr~~il   63 (80)
T 3bs5_B           10 SQVVDWMKGLDDCLQQYIKNFEREKISGDQLLRITHQEL-EDLGVSRIGHQELIL   63 (80)
T ss_dssp             HHHHHHHHTSCGGGGGGHHHHHHHTCCHHHHHTCCHHHH-HHTTCCCHHHHHHHH
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHcCCCHHHHHHCCHHHH-HHcCCCCHHHHHHHH
Confidence            4567788766  799999999999999999999999999 679995 59977654

>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus}

Probab=84.35  E-value=1.5  Score=46.55  Aligned_cols=69  Identities=13%  Similarity=0.068  Sum_probs=45.7

Q ss_pred             chhhccCCCEEEEeecCCCCcchHHHHHHHHhccchhhhcCCeEEEEecCChhhHHhhhcCCCCCceeEecc
Q 015842          223 ALELWRESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLHEYIESEVKDFWPRYWGGVVVYDQ  294 (399)
Q Consensus       223 LsdL~~~~pvVLvFyRg~gCP~Cr~el~~L~e~~pef~alGV~LVaIspE~~e~~ik~F~~~~l~f~VLsDp  294 (399)
                      +.++ .+++++|.|| -.||+.|+..+..|.++..+++. .+.++.|-.+......+.|.-..+|--++.+.
T Consensus       450 ~~~~-~~~~vlv~F~-a~wC~~c~~~~p~~~~~a~~~~~-~v~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~  518 (780)
T 3apo_A          450 FPAS-DKEPWLVDFF-APWSPPSRALLPELRKASTLLYG-QLKVGTLDCTIHEGLCNMYNIQAYPTTVVFNQ  518 (780)
T ss_dssp             SCTT-CCSCEEEEEE-CTTCHHHHHHHHHHHHHHHHTTT-TCEEEEEETTTCHHHHHHTTCCSSSEEEEEET
T ss_pred             HHHc-CCCeEEEEEE-CCCCHHHHHHhHHHHHHHHHhcC-CeEEEEEeCCCCHHHHHHcCCCcCCeEEEEcC
Confidence            3444 5667777665 47999999999999988877764 58888888765444344444344554444443

>3hz8_A Thiol:disulfide interchange protein DSBA; thiol-oxidoreductase, disulfide bond; 1.45A {Neisseria meningitidis MC58} PDB: 3dvw_A 3a3t_A

Probab=84.32  E-value=0.83  Score=40.39  Aligned_cols=32  Identities=16%  Similarity=0.092  Sum_probs=24.9

Q ss_pred             CCCEEEEeecCCCCcchHHHHHHHHhccchhh
Q 015842          229 ESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFD  260 (399)
Q Consensus       229 ~~pvVLvFyRg~gCP~Cr~el~~L~e~~pef~  260 (399)
                      .++++|+.|--+|||+|+.....|.+...++.
T Consensus        23 ~~~v~vv~f~d~~Cp~C~~~~~~l~~~~~~~~   54 (193)
T 3hz8_A           23 AGKVEVLEFFGYFCPHCAHLEPVLSKHAKSFK   54 (193)
T ss_dssp             TTSEEEEEEECTTCHHHHHHHHHHHHHHTTCC
T ss_pred             CCCcEEEEEECCCChhHHHHHHHHHHHHHHCC
Confidence            35778888889999999998887776655443

>2wci_A Glutaredoxin-4; redox-active center, iron-sulfur cluster scaffolder, Fe2S2, homodimer, transport, glutathione, thioredoxin fold; HET: GSH; 1.90A {Escherichia coli} PDB: 1yka_A

Probab=84.31  E-value=1.3  Score=37.97  Aligned_cols=32  Identities=22%  Similarity=0.347  Sum_probs=21.9

Q ss_pred             chhhccCCCEEEEeecC----CCCcchHHHHHHHHhc
Q 015842          223 ALELWRESPAVLLCIRR----PGCIMCRAEAHQLYAK  255 (399)
Q Consensus       223 LsdL~~~~pvVLvFyRg----~gCP~Cr~el~~L~e~  255 (399)
                      +.++.+..+++ +|..+    .|||||+.-..-|.+.
T Consensus        28 v~~~i~~~~Vv-vy~ks~~~~~~Cp~C~~ak~~L~~~   63 (135)
T 2wci_A           28 IQRQIAENPIL-LYMKGSPKLPSCGFSAQAVQALAAC   63 (135)
T ss_dssp             HHHHHHHCSEE-EEESBCSSSBSSHHHHHHHHHHHTT
T ss_pred             HHHHhccCCEE-EEEEecCCCCCCccHHHHHHHHHHc
Confidence            45566666654 56666    8999999776666553

>3evi_A Phosducin-like protein 2; alpha beta, 3-layer(ABA) sandwich, unknown function; 2.70A {Homo sapiens}

Probab=84.14  E-value=1  Score=37.28  Aligned_cols=38  Identities=16%  Similarity=0.211  Sum_probs=26.3

Q ss_pred             EEEEeecCCCCcchHHHHHHHHhccchhhhcCCeEEEEec
Q 015842          232 AVLLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLH  271 (399)
Q Consensus       232 vVLvFyRg~gCP~Cr~el~~L~e~~pef~alGV~LVaIsp  271 (399)
                      .||+.|-..||+.|+.....|.++..+..  +++++-|-.
T Consensus        25 ~vvv~F~a~wc~~C~~~~p~l~~la~~~~--~v~f~kvd~   62 (118)
T 3evi_A           25 WVIIHLYRSSIPMCLLVNQHLSLLARKFP--ETKFVKAIV   62 (118)
T ss_dssp             EEEEEEECTTSHHHHHHHHHHHHHHHHCT--TSEEEEEEG
T ss_pred             eEEEEEeCCCChHHHHHHHHHHHHHHHCC--CCEEEEEEh
Confidence            44455557999999999888877655543  467666653

>3gv1_A Disulfide interchange protein; neisseria gonorrhoeae (strain 700825 / FA 1090), DSBC, structural genomics, unknown funct 2; 2.00A {Neisseria gonorrhoeae}

Probab=83.94  E-value=1  Score=38.82  Aligned_cols=36  Identities=11%  Similarity=0.391  Sum_probs=27.9

Q ss_pred             cCCCEEEEeecCCCCcchHHHHHHHHhccchhhhcCCeEEEE
Q 015842          228 RESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAV  269 (399)
Q Consensus       228 ~~~pvVLvFyRg~gCP~Cr~el~~L~e~~pef~alGV~LVaI  269 (399)
                      .+++++|+.|=.++||||+.....|.++      -.++++.+
T Consensus        12 ~~a~~~vv~f~D~~Cp~C~~~~~~l~~l------~~v~v~~~   47 (147)
T 3gv1_A           12 GNGKLKVAVFSDPDCPFCKRLEHEFEKM------TDVTVYSF   47 (147)
T ss_dssp             TTCCEEEEEEECTTCHHHHHHHHHHTTC------CSEEEEEE
T ss_pred             CCCCEEEEEEECCCChhHHHHHHHHhhc------CceEEEEE
Confidence            5678888889999999999988887654      23566654

>3h8q_A Thioredoxin reductase 3; oxidoreductase, structural genomics, structural genomics CON SGC, developmental protein, differentiation; 2.21A {Homo sapiens} SCOP: c.47.1.0

Probab=83.87  E-value=0.45  Score=38.77  Aligned_cols=31  Identities=13%  Similarity=0.140  Sum_probs=21.3

Q ss_pred             chhhccCCCEEEEeecCCCCcchHHHHHHHHhc
Q 015842          223 ALELWRESPAVLLCIRRPGCIMCRAEAHQLYAK  255 (399)
Q Consensus       223 LsdL~~~~pvVLvFyRg~gCP~Cr~el~~L~e~  255 (399)
                      +.++.+..+++|  |-..|||+|+.-..-|.+.
T Consensus        10 ~~~~i~~~~v~v--y~~~~Cp~C~~ak~~L~~~   40 (114)
T 3h8q_A           10 LVGLIERSRVVI--FSKSYCPHSTRVKELFSSL   40 (114)
T ss_dssp             HHHHHHHCSEEE--EECTTCHHHHHHHHHHHHT
T ss_pred             HHHHhccCCEEE--EEcCCCCcHHHHHHHHHHc
Confidence            456666667554  5568999998776666553

>3rhb_A ATGRXC5, glutaredoxin-C5, chloroplastic; thioredoxin fold, thiol-disulfide oxidoreductase, glutaredox oxidoreductase; HET: GSH; 1.20A {Arabidopsis thaliana} PDB: 3rhc_A* 3fz9_A* 3fza_A*

Probab=83.86  E-value=0.44  Score=38.28  Aligned_cols=30  Identities=13%  Similarity=0.167  Sum_probs=19.8

Q ss_pred             chhhccCCCEEEEeecCCCCcchHHHHHHHHh
Q 015842          223 ALELWRESPAVLLCIRRPGCIMCRAEAHQLYA  254 (399)
Q Consensus       223 LsdL~~~~pvVLvFyRg~gCP~Cr~el~~L~e  254 (399)
                      +.++.+..+++  +|-..|||+|+....-|.+
T Consensus        12 ~~~~i~~~~v~--vy~~~~Cp~C~~~~~~L~~   41 (113)
T 3rhb_A           12 IRKTVTENTVV--IYSKTWCSYCTEVKTLFKR   41 (113)
T ss_dssp             HHHHHHHSSEE--EEECTTCHHHHHHHHHHHH
T ss_pred             HHHHHhcCCEE--EEECCCChhHHHHHHHHHH
Confidence            35556666743  3556999999876665554

>2dlx_A UBX domain-containing protein 7; UAS domain, protein KIAA0794, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: c.47.1.24

Probab=83.10  E-value=2  Score=37.34  Aligned_cols=65  Identities=14%  Similarity=0.181  Sum_probs=38.5

Q ss_pred             CCCEEEEeecCCCCcchHHHHHHHHh---ccchhhhcCCeEEEEecCChhh--HHhhhcCCCCCceeEeccc
Q 015842          229 ESPAVLLCIRRPGCIMCRAEAHQLYA---KKPIFDALGIQLFAVLHEYIES--EVKDFWPRYWGGVVVYDQG  295 (399)
Q Consensus       229 ~~pvVLvFyRg~gCP~Cr~el~~L~e---~~pef~alGV~LVaIspE~~e~--~ik~F~~~~l~f~VLsDp~  295 (399)
                      ++|++|. |-..||+.|+..-++.-.   ....+++ +.-+|-|-.+..+.  ..+.|.-..+|+-++.|++
T Consensus        42 ~K~vlvd-~~a~wC~~C~~me~~vf~d~~V~~~l~~-~fv~v~~d~~~~~~~~l~~~y~v~~~P~~~fld~~  111 (153)
T 2dlx_A           42 NKWLMIN-IQNVQDFACQCLNRDVWSNEAVKNIIRE-HFIFWQVYHDSEEGQRYIQFYKLGDFPYVSILDPR  111 (153)
T ss_dssp             TCEEEEE-EECSCTTTHHHHHHHTTTCHHHHHHHHH-TEEEEEEESSSHHHHHHHHHHTCCSSSEEEEECTT
T ss_pred             CCeEEEE-EECCCCHhHHHHHHHhcCCHHHHHHHHc-CeEEEEEecCCHhHHHHHHHcCCCCCCEEEEEeCC
Confidence            4555555 455799999988776633   2222322 44555554555432  1233434678888999997

>3gx8_A Monothiol glutaredoxin-5, mitochondrial; TRX fold, electron transport, mitochondrion, redox-active center, transit peptide, transport; 1.67A {Saccharomyces cerevisiae}

Probab=83.04  E-value=0.65  Score=38.76  Aligned_cols=32  Identities=22%  Similarity=0.359  Sum_probs=23.4

Q ss_pred             chhhccCCCEEEEeecC----CCCcchHHHHHHHHhc
Q 015842          223 ALELWRESPAVLLCIRR----PGCIMCRAEAHQLYAK  255 (399)
Q Consensus       223 LsdL~~~~pvVLvFyRg----~gCP~Cr~el~~L~e~  255 (399)
                      +.++.+..++ ++|-.+    +|||||+.-.+-|.+.
T Consensus         9 v~~~i~~~~V-vvfsk~t~~~p~Cp~C~~ak~lL~~~   44 (121)
T 3gx8_A            9 IEDAIESAPV-VLFMKGTPEFPKCGFSRATIGLLGNQ   44 (121)
T ss_dssp             HHHHHHSCSE-EEEESBCSSSBCTTHHHHHHHHHHHH
T ss_pred             HHHHhccCCE-EEEEeccCCCCCCccHHHHHHHHHHc
Confidence            4667777774 467777    6999998877776653

>3feu_A Putative lipoprotein; alpha-beta structure, structural genomics, PSI-2, protein ST initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.76A {Vibrio fischeri} SCOP: c.47.1.0

Probab=82.58  E-value=0.5  Score=41.73  Aligned_cols=30  Identities=17%  Similarity=0.093  Sum_probs=22.3

Q ss_pred             CCCEEEEeecCCCCcchHHHHHHHHhccchh
Q 015842          229 ESPAVLLCIRRPGCIMCRAEAHQLYAKKPIF  259 (399)
Q Consensus       229 ~~pvVLvFyRg~gCP~Cr~el~~L~e~~pef  259 (399)
                      ++++||.|| -+|||+|+.....|.+...++
T Consensus        22 ~~~~vvef~-d~~Cp~C~~~~~~~~~~~~~~   51 (185)
T 3feu_A           22 GMAPVTEVF-ALSCGHCRNMENFLPVISQEA   51 (185)
T ss_dssp             CCCSEEEEE-CTTCHHHHHHGGGHHHHHHHH
T ss_pred             CCCEEEEEE-CCCChhHHHhhHHHHHHHHHh
Confidence            467777777 799999998876666655555

>3ga4_A Dolichyl-diphosphooligosaccharide-protein glycosyltransferase subunit OST6; oxidoreductase, active site loop, redox state, membrane; HET: PG4; 1.30A {Saccharomyces cerevisiae} PDB: 3g7y_A 3g9b_A*

Probab=82.56  E-value=2.8  Score=37.66  Aligned_cols=31  Identities=13%  Similarity=0.182  Sum_probs=24.8

Q ss_pred             CCEEEEeec------CCCCcchHHHHHHHHhccchhh
Q 015842          230 SPAVLLCIR------RPGCIMCRAEAHQLYAKKPIFD  260 (399)
Q Consensus       230 ~pvVLvFyR------g~gCP~Cr~el~~L~e~~pef~  260 (399)
                      .++||.|.-      +.||+.|+...-.|.++..++.
T Consensus        38 ~~vvV~F~A~~~~~~~~wCgpCk~l~P~~e~lA~~~~   74 (178)
T 3ga4_A           38 YFNILYITMRGTNSNGMSCQLCHDFEKTYHAVADVIR   74 (178)
T ss_dssp             CEEEEEEECCSBCTTSCBCHHHHHHHHHHHHHHHHHH
T ss_pred             CcEEEEEeCCCCCCCCCCChhHHHHHHHHHHHHHHhh
Confidence            467777776      3699999999998888877775

>2cq9_A GLRX2 protein, glutaredoxin 2; glutathione-S-transferase, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=82.49  E-value=0.36  Score=40.34  Aligned_cols=31  Identities=13%  Similarity=0.276  Sum_probs=20.8

Q ss_pred             chhhccCCCEEEEeecCCCCcchHHHHHHHHhc
Q 015842          223 ALELWRESPAVLLCIRRPGCIMCRAEAHQLYAK  255 (399)
Q Consensus       223 LsdL~~~~pvVLvFyRg~gCP~Cr~el~~L~e~  255 (399)
                      +.+++...+++|  |-..|||+|+.....|.+.
T Consensus        20 ~~~~i~~~~vvv--f~~~~Cp~C~~~~~~L~~~   50 (130)
T 2cq9_A           20 IQETISDNCVVI--FSKTSCSYCTMAKKLFHDM   50 (130)
T ss_dssp             HHHHHHHSSEEE--EECSSCSHHHHHHHHHHHH
T ss_pred             HHHHHcCCcEEE--EEcCCChHHHHHHHHHHHc
Confidence            455566666554  5569999998866666543

>3ipz_A Monothiol glutaredoxin-S14, chloroplastic; electron transport, PL redox-active center, transit peptide, transport, oxidoreduc; 2.40A {Arabidopsis thaliana} PDB: 2lku_A

Probab=82.40  E-value=0.83  Score=37.07  Aligned_cols=32  Identities=19%  Similarity=0.213  Sum_probs=23.3

Q ss_pred             chhhccCCCEEEEeecC----CCCcchHHHHHHHHhc
Q 015842          223 ALELWRESPAVLLCIRR----PGCIMCRAEAHQLYAK  255 (399)
Q Consensus       223 LsdL~~~~pvVLvFyRg----~gCP~Cr~el~~L~e~  255 (399)
                      +.++.+..+++ +|..+    +|||||+.-..-|.+.
T Consensus        11 v~~~i~~~~Vv-vy~k~t~~~p~Cp~C~~ak~~L~~~   46 (109)
T 3ipz_A           11 LEKLVNSEKVV-LFMKGTRDFPMCGFSNTVVQILKNL   46 (109)
T ss_dssp             HHHHHTSSSEE-EEESBCSSSBSSHHHHHHHHHHHHT
T ss_pred             HHHHHccCCEE-EEEecCCCCCCChhHHHHHHHHHHc
Confidence            46667777755 67776    6999998877777664

>2kiv_A Ankyrin repeat and sterIle alpha motif domain- containing protein 1B; SAM domain, tandem, signaling protein, alternative splicing, ANK repeat; NMR {Homo sapiens}

Probab=82.22  E-value=0.42  Score=41.63  Aligned_cols=51  Identities=22%  Similarity=0.327  Sum_probs=44.8

Q ss_pred             HHhhhccchhhhhhhHHHHHcCC-ChHHHhccCcccchhhhcc-ccccccccc
Q 015842           38 EIRSYLHDRALMQYADIFEASGK-SLPELLNLSTGDLSSQFGM-KRGHMARFK   88 (399)
Q Consensus        38 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~~   88 (399)
                      .+..||.+-+|=||++.+.+.|. ++..|..++..||-...|+ +-||..|-+
T Consensus        90 ~v~~WL~~i~L~qY~~~F~~~g~~~~~~l~~lt~~dLl~~lGI~~~gHrkrIl  142 (148)
T 2kiv_A           90 SVAEWLDSIELGDYTKAFLINGYTSMDLLKKIAEVELINVLKINLIGHRKRIL  142 (148)
T ss_dssp             SHHHHHHTTTCCTHHHHHHHHTCCSHHHHTSCCHHHHHHHTCCCCHHHHHHHH
T ss_pred             hHHHHHHHCCcHHHHHHHHHcCCChHHHHHhCCHHHHHHhCCCCChhHHHHHH
Confidence            56679999999999999999998 6888999999999899999 578987754

>1fov_A Glutaredoxin 3, GRX3; active site disulfide, CIS Pro 53, electron transport; NMR {Escherichia coli} SCOP: c.47.1.1 PDB: 3grx_A*

Probab=81.91  E-value=2.1  Score=31.51  Aligned_cols=20  Identities=15%  Similarity=0.283  Sum_probs=14.5

Q ss_pred             EeecCCCCcchHHHHHHHHh
Q 015842          235 LCIRRPGCIMCRAEAHQLYA  254 (399)
Q Consensus       235 vFyRg~gCP~Cr~el~~L~e  254 (399)
                      .+|-..|||+|+.....|.+
T Consensus         4 ~~y~~~~C~~C~~~~~~l~~   23 (82)
T 1fov_A            4 EIYTKETCPYCHRAKALLSS   23 (82)
T ss_dssp             EEEECSSCHHHHHHHHHHHH
T ss_pred             EEEECCCChhHHHHHHHHHH
Confidence            34557899999977666654

>1v85_A Similar to ring finger protein 36; apoptosis, neuron, cell death, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus}

Probab=81.89  E-value=0.48  Score=37.98  Aligned_cols=55  Identities=18%  Similarity=0.228  Sum_probs=49.0

Q ss_pred             hHHHHhhhccchhh--hhhhHHHHHcCCChHHHhccCcccch-hhhccc-ccccccccc
Q 015842           35 DALEIRSYLHDRAL--MQYADIFEASGKSLPELLNLSTGDLS-SQFGMK-RGHMARFKD   89 (399)
Q Consensus        35 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~   89 (399)
                      ..=++..||+..|+  =+|++.+....++-.-|+.+...||. ..+|+. -||.-+++.
T Consensus        21 t~~dV~~WL~~~gl~~~~Y~~~F~~~~IdG~~Ll~Lt~~dL~~~~LGI~~~g~r~~il~   79 (91)
T 1v85_A           21 TTEEVVLWLEQLGPWASLYRDRFLSERVNGRLLLTLTEEEFSRAPYTIENSSHRRVILT   79 (91)
T ss_dssp             CHHHHHHHHHHHCGGGHHHHHHHHHTTCCHHHHHHCCHHHHHSTTTCCCCHHHHHHHHH
T ss_pred             CHHHHHHHHHHcCCCHHHHHHHHHHhCCCHHHHhcCCHHHHhccCCCCCCHHHHHHHHH
Confidence            45578899999999  99999999999999999999999999 689987 499888864

>3zyw_A Glutaredoxin-3; metal binding protein; 1.84A {Homo sapiens}

Probab=81.61  E-value=0.91  Score=37.20  Aligned_cols=32  Identities=19%  Similarity=0.351  Sum_probs=23.0

Q ss_pred             chhhccCCCEEEEeecC----CCCcchHHHHHHHHhc
Q 015842          223 ALELWRESPAVLLCIRR----PGCIMCRAEAHQLYAK  255 (399)
Q Consensus       223 LsdL~~~~pvVLvFyRg----~gCP~Cr~el~~L~e~  255 (399)
                      +.++.+..|+| +|.+|    .|||||+.-..-|.+.
T Consensus         9 v~~~i~~~~Vv-lf~kg~~~~~~Cp~C~~ak~~L~~~   44 (111)
T 3zyw_A            9 LKKLTHAAPCM-LFMKGTPQEPRCGFSKQMVEILHKH   44 (111)
T ss_dssp             HHHHHTSSSEE-EEESBCSSSBSSHHHHHHHHHHHHT
T ss_pred             HHHHHhcCCEE-EEEecCCCCCcchhHHHHHHHHHHc
Confidence            46777887766 55553    8999998877766653

>2znm_A Thiol:disulfide interchange protein DSBA; thioredoxin fold, DSBA-like, oxidoreductase; 2.30A {Neisseria meningitidis serogroup B} PDB: 3dvx_A

Probab=81.55  E-value=0.44  Score=41.39  Aligned_cols=30  Identities=13%  Similarity=0.061  Sum_probs=22.3

Q ss_pred             CCCEEEEeecCCCCcchHHHHHHHHhccch
Q 015842          229 ESPAVLLCIRRPGCIMCRAEAHQLYAKKPI  258 (399)
Q Consensus       229 ~~pvVLvFyRg~gCP~Cr~el~~L~e~~pe  258 (399)
                      +++++|+.|=-+|||+|......|.++..+
T Consensus        21 ~~~~~i~~f~d~~Cp~C~~~~~~l~~l~~~   50 (195)
T 2znm_A           21 SGKIEVLEFFGYFCVHCHHFDPLLLKLGKA   50 (195)
T ss_dssp             SSSEEEEEEECTTSCCTTSSCHHHHHHHHH
T ss_pred             CCCcEEEEEECCCChhHHHHhHHHHHHHHH
Confidence            456777777899999999877777654433

>3kka_C Ephrin type-A receptor 2; ATP-binding, kinase, nucleotide-binding, transferase, tyrosine-protein kinase, signal, sterIle alpha motif; 2.40A {Homo sapiens} SCOP: a.60.1.0

Probab=81.46  E-value=0.51  Score=37.85  Aligned_cols=52  Identities=21%  Similarity=0.514  Sum_probs=45.3

Q ss_pred             HHHhhhccchhhhhhhHHHHHcCCC-hHHHhccCcccchhhhcccc-cccccccc
Q 015842           37 LEIRSYLHDRALMQYADIFEASGKS-LPELLNLSTGDLSSQFGMKR-GHMARFKD   89 (399)
Q Consensus        37 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~   89 (399)
                      -.+..||..-+|=||.+.++..|.. +..|..++..||- +.|... ||-.|.+.
T Consensus        22 ~~V~~WL~~lgL~qY~~~F~~~g~d~le~l~~lt~~DL~-~LGIt~~GHRkkIL~   75 (86)
T 3kka_C           22 RTVSEWLESIKMQQYTEHFMAAGYTAIEKVVQMTNDDIK-RIGVRLPGHQKRIAY   75 (86)
T ss_dssp             -CHHHHHHHTTCGGGHHHHHHTTCCSHHHHHTCCHHHHH-HTTCCCHHHHHHHHH
T ss_pred             hHHHHHHHhCCcHHHHHHHHHcCCChHHHHHhCCHHHHH-HCCCCCHHHHHHHHH
Confidence            3578899999999999999999998 9999999999995 688887 99877664

>2kg5_A ARF-GAP, RHO-GAP domain, ANK repeat and PH domain-containing protein 3; SAM domain, helix bundle, cell membrane, cell projection, cytoplasm; NMR {Homo sapiens}

Probab=81.18  E-value=0.54  Score=38.73  Aligned_cols=54  Identities=31%  Similarity=0.456  Sum_probs=47.5

Q ss_pred             HHHHhhhccchhhhhhhHHHHHcCCC-hHHHhccCcccchhhhcccc-ccccccccc
Q 015842           36 ALEIRSYLHDRALMQYADIFEASGKS-LPELLNLSTGDLSSQFGMKR-GHMARFKDR   90 (399)
Q Consensus        36 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~   90 (399)
                      .-++..||..-+|=||++.+++.|.+ +..|+.++..||- +.|+.. ||-.|.+..
T Consensus        26 ~~~V~~WL~~lgL~qY~~~F~~~gid~~~~L~~Lt~eDLk-eLGIt~~GhRkkIL~a   81 (100)
T 2kg5_A           26 DLDIAVWLATVHLEQYADTFRRHGLATAGAARGLGHEELK-QLGISATGHRKRILRL   81 (100)
T ss_dssp             TCBHHHHHGGGTCGGGHHHHHHTTCCBHHHHTTCCHHHHH-HHTCCCHHHHHHHHHH
T ss_pred             cChHHHHHHHCCCHHHHHHHHHcCCChHHHHHhcCHHHHH-HCCCCChhHHHHHHHH
Confidence            34688999999999999999999999 9999999999996 589885 998887743

>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A

Probab=80.55  E-value=2.4  Score=43.25  Aligned_cols=57  Identities=11%  Similarity=-0.009  Sum_probs=36.7

Q ss_pred             CCCEEEEeecCCCCcchHHHHHHHHhccchhhhcCCeEEEEecCChhhHHhhhcCCCCC
Q 015842          229 ESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLHEYIESEVKDFWPRYWG  287 (399)
Q Consensus       229 ~~pvVLvFyRg~gCP~Cr~el~~L~e~~pef~alGV~LVaIspE~~e~~ik~F~~~~l~  287 (399)
                      ++++.|.+|--.|||+|+.....|.+...+..  ++.++.|-.+......+.|.-...|
T Consensus       116 ~~~~~i~~f~a~~C~~C~~~~~~l~~~a~~~~--~v~~~~vd~~~~~~~~~~~~i~svP  172 (521)
T 1hyu_A          116 DGDFEFETYYSLSCHNCPDVVQALNLMAVLNP--RIKHTAIDGGTFQNEITERNVMGVP  172 (521)
T ss_dssp             CSCEEEEEEECTTCSSHHHHHHHHHHHHHHCT--TEEEEEEETTTCHHHHHHTTCCSSS
T ss_pred             CCCcceEEEECCCCcCcHHHHHHHHHHHhHcC--ceEEEEEechhhHHHHHHhCCCccC
Confidence            46777888889999999998888776543332  5777766554433334444323444

>2ht9_A Glutaredoxin-2; thioredoxin fold, iron-sulfur cluster, 2Fe2S, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: GSH; 1.90A {Homo sapiens} PDB: 2fls_A*

Probab=80.13  E-value=0.47  Score=40.88  Aligned_cols=30  Identities=13%  Similarity=0.300  Sum_probs=20.6

Q ss_pred             chhhccCCCEEEEeecCCCCcchHHHHHHHHh
Q 015842          223 ALELWRESPAVLLCIRRPGCIMCRAEAHQLYA  254 (399)
Q Consensus       223 LsdL~~~~pvVLvFyRg~gCP~Cr~el~~L~e  254 (399)
                      +.+++++.+++|  |-..|||+|+.....|.+
T Consensus        42 ~~~~i~~~~Vvv--f~~~~Cp~C~~~k~~L~~   71 (146)
T 2ht9_A           42 IQETISDNCVVI--FSKTSCSYCTMAKKLFHD   71 (146)
T ss_dssp             HHHHHHHCSEEE--EECTTCHHHHHHHHHHHH
T ss_pred             HHHHhcCCCEEE--EECCCChhHHHHHHHHHH
Confidence            456666666554  556999999886665554

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	399
d2cx4a1	160	Bacterioferritin comigratory protein {Archaeon Aer	99.92
d2bmxa1	169	Alkyl hydroperoxide reductase AhpC {Mycobacterium	99.89
d1zofa1	170	Thioredoxin reductase TsaA {Helicobacter pylori [T	99.89
d1prxa_	220	1-Cys peroxiredoxin {Human (Homo sapiens) [TaxId:	99.89
d1e2ya_	167	Tryparedoxin peroxidase (thioredoxin peroxidase ho	99.89
d1xvwa1	153	Putative peroxiredoxin Rv2238c/MT2298 {Mycobacteri	99.88
d1we0a1	166	Alkyl hydroperoxide reductase AhpC {Amphibacillus	99.88
d1zyea1	158	Peroxiredoxin-3 (AOP-1, SP-22) {Cow (Bos taurus) [	99.87
d2h01a1	170	Thioredoxin peroxidase 2 (thioredoxin peroxidase B	99.86
d2a4va1	156	Peroxiredoxin dot5 {Baker's yeast (Saccharomyces c	99.86
d1uula_	194	Tryparedoxin peroxidase (thioredoxin peroxidase ho	99.86
d1qmva_	197	Thioredoxin peroxidase 2 (thioredoxin peroxidase B	99.86
d2zcta1	237	Peroxiredoxin {Aeropyrum pernix [TaxId: 56636]}	99.85
d1xcca_	219	1-Cys peroxiredoxin {Plasmodium yoelii yoelii [Tax	99.85
d1psqa_	163	Probable thiol peroxidase PsaD {Streptococcus pneu	99.85
d1qxha_	164	Thiol peroxidase Tpx {Escherichia coli [TaxId: 562	99.84
d1n8ja_	186	Alkyl hydroperoxide reductase AhpC {Salmonella typ	99.84
d1q98a_	164	Thiol peroxidase Tpx {Haemophilus influenzae [TaxI	99.83
d1xvqa_	166	Thiol peroxidase Tpx {Mycobacterium tuberculosis [	99.83
d1st9a_	137	Thiol-disulfide oxidoreductase ResA {Bacillus subt	99.69
d1lu4a_	134	Soluble secreted antigen MPT53 {Mycobacterium tube	99.69
d1hd2a_	161	Peroxiredoxin 5 {Human (Homo sapiens) [TaxId: 9606	99.68
d2cvba1	187	Probable thiol-disulfide isomerase/thioredoxin TTH	99.57
d1jfua_	176	Membrane-anchored thioredoxin-like protein TlpA, s	99.56
d1tp9a1	162	Plant peroxiredoxin {Western balsam poplar(Populus	99.52
d2fy6a1	143	Peptide methionine sulfoxide reductase MsrA/MsrB,	99.51
d2b5xa1	143	thiol:disulfide oxidoreductase YkuV {Bacillus subt	99.49
d1zzoa1	134	Lipoprotein DsbF {Mycobacterium tuberculosis [TaxI	99.43
d1nm3a2	163	N-terminal, Prx domain of Hybrid-Prx5 {Haemophilus	99.43
d1knga_	144	Thioredoxin-like protein CcmG (CycY, DsbE) {Bradyr	99.32
d1z5ye1	136	Thioredoxin-like protein CcmG (CycY, DsbE) {Escher	99.27
d1xzoa1	172	Thioredoxin-like protein Sco1 (YpmQ), soluble doma	99.24
d1o8xa_	144	Tryparedoxin I {Crithidia fasciculata [TaxId: 5656	99.02
d1o73a_	144	Tryparedoxin I {Trypanosoma brucei brucei [TaxId:	98.97
d1xiya1	179	1-Cys peroxiredoxin {Malaria parasite (Plasmodium	98.83
d1i5ga_	144	Tryparedoxin II {Crithidia fasciculata [TaxId: 565	98.8
d2b7ka1	169	Thioredoxin-like protein Sco1 (YpmQ), soluble doma	98.46
d1wp0a1	160	Thioredoxin-like protein Sco1 (YpmQ), soluble doma	98.36
d2f8aa1	184	Glutathione peroxidase {Human (Homo sapiens) [TaxI	98.28
d1sena_	135	Thioredoxin-like protein p19, TLP19 {Human (Homo s	96.4
d2fwha1	117	Thiol:disulfide interchange protein DsbD, C-termin	95.9
d2b5ea4	119	Protein disulfide isomerase, PDI {Baker's yeast (S	95.74
d1thxa_	108	Thioredoxin {Anabaena sp., pcc 7120 [TaxId: 1167]}	95.65
d1fb6a_	104	Thioredoxin {Spinach (Spinacia oleracea), thioredo	95.3
d1z6na1	166	Hypothetical protein PA1234 {Pseudomonas aeruginos	95.23
d1r26a_	113	Thioredoxin {Trypanosoma brucei [TaxId: 5691]}	95.16
d1nw2a_	105	Thioredoxin {Alicyclobacillus acidocaldarius, form	95.11
d2b5ea1	140	Protein disulfide isomerase, PDI {Baker's yeast (S	95.1
d1ep7a_	112	Thioredoxin {Chlamydomonas reinhardtii [TaxId: 305	94.86
d1ow5a_	60	Serine/threonine-protein kinase ste11 {Baker's yea	94.86
d1a8la2	107	Protein disulfide isomerase, PDI {Archaeon Pyrococ	94.55
d1f9ma_	112	Thioredoxin {Spinach (Spinacia oleracea), thioredo	94.44
d1xfla_	114	Thioredoxin {Thale cress (Arabidopsis thaliana) [T	94.38
d1dbya_	107	Thioredoxin {Chlamydomonas reinhardtii [TaxId: 305	94.37
d1ti3a_	113	Thioredoxin {European aspen (Populus tremula), thi	94.14
d1gh2a_	107	Thioredoxin-like protein, N-terminal domain {Human	94.1
d1meka_	120	Protein disulfide isomerase, PDI {Human (Homo sapi	93.88
d1ucva_	81	Ephrin type-A receptor 8, C-terminal domain {Human	93.7
d2trxa_	108	Thioredoxin {Escherichia coli [TaxId: 562]}	93.62
d1b4fa_	74	EphB2 receptor {Human (Homo sapiens) [TaxId: 9606]	93.6
d2f3na1	64	Sh3 and multiple ankyrin repeat domains 3 (Shank3)	93.6
d1woua_	119	Putative 42-9-9 protein (thioredoxin containing pr	93.56
d1x40a1	78	Centaurin-delta 1 (Arap2) {Human(Homo sapiens) [Ta	93.47
d1hyua4	96	Alkyl hydroperoxide reductase subunit F (AhpF), N-	93.41
d1zmaa1	115	Bacterocin transport accessory protein Bta {Strept	93.36
d1syra_	103	Thioredoxin {Malarial parasite (Plasmodium falcipa	93.0
d1xwaa_	111	Thioredoxin {Fruit fly (Drosophila melanogaster) [	92.76
d1b0xa_	72	EphA4 receptor tyrosine kinases {Mouse (Mus muscul	92.59
d2djja1	116	Protein disulfide isomerase, PDI {Fungi (Humicola	91.11
d1v38a_	78	Sam-domain protein samsn-1 {Mouse (Mus musculus) [	91.1
d2dlxa1	147	UBX domain-containing protein 7 {Human (Homo sapie	91.0
d2es7a1	119	Hydrogenase-1 operon protein HyaE {Salmonella typh	90.71
d1wjka_	100	Thioredoxin-like structure containing protein C330	90.59
d2ifqa1	105	Thioredoxin {Human (Homo sapiens) [TaxId: 9606]}	90.3
d1dxsa_	57	C-terminal domain of p73 {Human (Homo sapiens) [Ta	90.28
d1nhoa_	85	MTH807, thioredoxin/glutaredoxin-like protein {Arc	89.76
d1pk3a1	63	Polycomb protein Scm {Fruit fly (Drosophila melano	88.58
d1qgva_	137	spliceosomal protein U5-15Kd {Human (Homo sapiens)	87.75
d1fo5a_	85	MJ0307, thioredoxin/glutaredoxin-like protein {Arc	87.51
d1kw4a_	70	Polyhomeotic {Drosophila melanogaster [TaxId: 7227	86.49
d1oxja1	62	RNA-binding protein Smaug {Drosophila melanogaster	84.7
d2hfda1	132	Hydrogenase-1 operon protein HyaE {Escherichia col	82.18
d1a8ya1	124	Calsequestrin {Rabbit (Oryctolagus cuniculus) [Tax	81.15

>d2cx4a1 c.47.1.10 (A:4-163) Bacterioferritin comigratory protein {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Bacterioferritin comigratory protein
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=99.92  E-value=2.1e-25  Score=192.78  Aligned_cols=155  Identities=19%  Similarity=0.193  Sum_probs=132.8

Q ss_pred             CCCCCCCCcccccCccccccchhhhcccccccccCCCceechhhccC-CCEEEEeecCCCCcchHHHHHHHHhccchhhh
Q 015842          183 PVNEKVAPYSAIENISIQKLTPEYKIGMERLVKTKTPPMKALELWRE-SPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDA  261 (399)
Q Consensus       183 ~~~~~~apl~~L~~i~l~~l~~~~~~g~~~~v~~~G~~VsLsdL~~~-~pvVLvFyRg~gCP~Cr~el~~L~e~~pef~a  261 (399)
                      .++|+.||.|.|++.                   +|+.++|++++.+ +++||+|||+.|||.|+.++.+|++.++++++
T Consensus         2 i~vG~~aPdF~L~~~-------------------~G~~~~Lsd~~~~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~   62 (160)
T d2cx4a1           2 VELGEKAPDFTLPNQ-------------------DFEPVNLYEVLKRGRPAVLIFFPAAFSPVCTKELCTFRDKMAQLEK   62 (160)
T ss_dssp             CCTTSBCCCCEECCT-------------------TSCCEEHHHHHTTSSCEEEEECSCTTCHHHHHHHHHHHHTCTTTST
T ss_pred             CcCCCCCcCeEeECC-------------------CCCEEehHHHhhCCCEEEEEecccccCCchhhhhhhhhcccccccc
Confidence            368999998888765                   5999999999854 68999999999999999999999999999999


Q ss_pred             cCCeEEEEecCChhhHHhhhcC-CCCCceeEeccchHHHHHhCCCcccccccccccccCHHHHHHHHHHHhcCCccccCC
Q 015842          262 LGIQLFAVLHEYIESEVKDFWP-RYWGGVVVYDQGMEFFKALGGGKLLKDKFLSGFLLNPRAIANYKRARTLGVEQNFKG  340 (399)
Q Consensus       262 lGV~LVaIspE~~e~~ik~F~~-~~l~f~VLsDp~r~lYkaLGl~r~~r~s~lsgfl~~P~v~~~~~rA~~~G~~gn~~G  340 (399)
                      .|+.+|+|++++++. .+.|.. +.++|++++|++..++++||+..    ....                  +      +
T Consensus        63 ~~~~vv~is~d~~~~-~~~~~~~~~~~~~~l~D~~~~~~~~~gv~~----~~~~------------------~------~  113 (160)
T d2cx4a1          63 ANAEVLAISVDSPWC-LKKFKDENRLAFNLLSDYNREVIKLYNVYH----EDLK------------------G------L  113 (160)
T ss_dssp             TCCEEEEEESSCHHH-HHHHHHHHTCSSEEEECTTSHHHHHTTCEE----EEET------------------T------E
T ss_pred             cccccccccccchhh-hhhhcccceeeEEEeecCCcchHHHcCccc----cccc------------------c------c
Confidence            999999999998875 677764 78999999999999999999852    0000                  0      1


Q ss_pred             CCcccceEEEEecCCCcEEEEEecCCCCCCCCHHHHHHHHHhhhhh
Q 015842          341 EGEIKGGLFIVGRGRSGIAYQFIERNFGDWAPLAEVIEICTQLQDQ  386 (399)
Q Consensus       341 D~~qLGGtFVId~gGg~I~yah~d~d~gDrad~eeVLaAl~~l~~~  386 (399)
                      .....|++||||++| +|+|.|+..++.+++++++||++++++..+
T Consensus       114 ~~~~~~~~flId~~G-~I~~~~~~~~~~~~~~~~eil~~l~~l~~e  158 (160)
T d2cx4a1         114 KMVAKRAVFIVKPDG-TVAYKWVTDNPLNEPDYDEVVREANKIAGE  158 (160)
T ss_dssp             EEEECCEEEEECTTS-BEEEEEECSSTTCCCCHHHHHHHHHHHHTT
T ss_pred             cccceeeEEEEcCCC-EEEEEEEeCCCCCCCCHHHHHHHHHHHccc
Confidence            123468999999996 999999999999999999999999998755

>d2bmxa1 c.47.1.10 (A:2-170) Alkyl hydroperoxide reductase AhpC {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Alkyl hydroperoxide reductase AhpC
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.89  E-value=2.4e-23  Score=183.25  Aligned_cols=162  Identities=14%  Similarity=0.065  Sum_probs=126.3

Q ss_pred             CCCCCCCCCcccccCccccccchhhhcccccc-cccCCCceechhhccCCCEEEEeecCCCCcchHHHHHHHHhccchhh
Q 015842          182 PPVNEKVAPYSAIENISIQKLTPEYKIGMERL-VKTKTPPMKALELWRESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFD  260 (399)
Q Consensus       182 a~~~~~~apl~~L~~i~l~~l~~~~~~g~~~~-v~~~G~~VsLsdL~~~~pvVLvFyRg~gCP~Cr~el~~L~e~~pef~  260 (399)
                      -+++|++||.|.|++..=.....     .+.. ....|+.++++++ +++++||.||++.|||.|+.++.+|.+.+++|+
T Consensus         2 ~l~vGd~aPdF~l~~~~g~~~~~-----~~~~~~~~~~~~~~l~d~-~GK~vvl~f~p~~~~p~C~~~~~~~~~~~~~~~   75 (169)
T d2bmxa1           2 LLTIGDQFPAYQLTALIGGDLSK-----VDAKQPGDYFTTITSDEH-PGKWRVVFFWPKDFTFVCPTEIAAFSKLNDEFE   75 (169)
T ss_dssp             BCCTTCBCCCCEEEEECSSCGGG-----SCCSSGGGGEEEEETTSS-TTCEEEEEECSCTTSCCCHHHHHHHHHTHHHHH
T ss_pred             CCCCCCCCCCCEEeeccCCcccc-----cccccccccccEeeHHHH-CCCeEEEEEecCCCCcccccccccccccccccc
Confidence            36799999988886552111100     0000 0123578999996 678999999999999999999999999999999


Q ss_pred             hcCCeEEEEecCChhhHHhhhcC-----CCCCceeEeccchHHHHHhCCCcccccccccccccCHHHHHHHHHHHhcCCc
Q 015842          261 ALGIQLFAVLHEYIESEVKDFWP-----RYWGGVVVYDQGMEFFKALGGGKLLKDKFLSGFLLNPRAIANYKRARTLGVE  335 (399)
Q Consensus       261 alGV~LVaIspE~~e~~ik~F~~-----~~l~f~VLsDp~r~lYkaLGl~r~~r~s~lsgfl~~P~v~~~~~rA~~~G~~  335 (399)
                      +.|+++|+|+.+.... .++|..     ..++|++++|+++++.++||+..                             
T Consensus        76 ~~g~~vv~is~d~~~~-~~~~~~~~~~~~~~~f~ll~D~~~~v~~~ygv~~-----------------------------  125 (169)
T d2bmxa1          76 DRDAQILGVSIDSEFA-HFQWRAQHNDLKTLPFPMLSDIKRELSQAAGVLN-----------------------------  125 (169)
T ss_dssp             TTTEEEEEEESSCHHH-HHHHHHHCTTGGGCCSCEEECTTSHHHHHHTCBC-----------------------------
T ss_pred             ccCcceeeccccchhh-hhhhcccccccccceEEEEeccHHHHHHHcCCCc-----------------------------
Confidence            9999999999998764 555553     34899999999999999999831                             


Q ss_pred             cccCCCCcccceEEEEecCCCcEEEEEecCCCCCCCCHHHHHHHHHhhhh
Q 015842          336 QNFKGEGEIKGGLFIVGRGRSGIAYQFIERNFGDWAPLAEVIEICTQLQD  385 (399)
Q Consensus       336 gn~~GD~~qLGGtFVId~gGg~I~yah~d~d~gDrad~eeVLaAl~~l~~  385 (399)
                          .++...|++||||++| +|+|.|+.....++ ++++||++++++|.
T Consensus       126 ----~~~~~~r~~fvID~~G-~I~~~~~~~~~~~~-~~~evl~~l~alq~  169 (169)
T d2bmxa1         126 ----ADGVADRVTFIVDPNN-EIQFVSATAGSVGR-NVDEVLRVLDALQS  169 (169)
T ss_dssp             ----TTSSBCEEEEEECTTS-BEEEEEEECTTCCC-CHHHHHHHHHHHHC
T ss_pred             ----cCCccceeEEEEcCCC-EEEEEEEcCCCCCC-CHHHHHHHHHHhcC
Confidence                1123568999999996 99999997765554 78999999999873

>d1zofa1 c.47.1.10 (A:1-170) Thioredoxin reductase TsaA {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin reductase TsaA
species: Helicobacter pylori [TaxId: 210]

Probab=99.89  E-value=1.8e-23  Score=185.88  Aligned_cols=157  Identities=11%  Similarity=0.042  Sum_probs=128.5

Q ss_pred             CCCCCCCcccccCccccccchhhhcccccccccCCCceechhhccCCCEEEEeecCCCCcchHHHHHHHHhccchhhhcC
Q 015842          184 VNEKVAPYSAIENISIQKLTPEYKIGMERLVKTKTPPMKALELWRESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALG  263 (399)
Q Consensus       184 ~~~~~apl~~L~~i~l~~l~~~~~~g~~~~v~~~G~~VsLsdL~~~~pvVLvFyRg~gCP~Cr~el~~L~e~~pef~alG  263 (399)
                      .+|++||.|.|++..-.              +..|+.++|+++..++++||+||+..|||.|..|+.++++.+++|+++|
T Consensus         2 lVG~~APdF~l~~~~g~--------------~~~~~~~~Lsd~~gk~~vvl~FyP~~~tp~C~~e~~~~~~~~~~f~~~g   67 (170)
T d1zofa1           2 VVTKLAPDFKAPAVLGN--------------NEVDEHFELSKNLGKNGVILFFWPKDFTFVCPTEIIAFDKRVKDFHEKG   67 (170)
T ss_dssp             CTTSBCCCCEEEEECTT--------------SCEEEEEETTTSCCSSEEEEEECSCTTCSSCCTHHHHHHHTHHHHHHTT
T ss_pred             CCCCcCCCcCcccccCC--------------CccceEEEeHHHcCCCEEEEEEEccccCCcCHHHHHHHHHhHHhhccCC
Confidence            47999998888766210              0114689999988888999999999999999999999999999999999


Q ss_pred             CeEEEEecCChhhHHhhhcC--------CCCCceeEeccchHHHHHhCCCcccccccccccccCHHHHHHHHHHHhcCCc
Q 015842          264 IQLFAVLHEYIESEVKDFWP--------RYWGGVVVYDQGMEFFKALGGGKLLKDKFLSGFLLNPRAIANYKRARTLGVE  335 (399)
Q Consensus       264 V~LVaIspE~~e~~ik~F~~--------~~l~f~VLsDp~r~lYkaLGl~r~~r~s~lsgfl~~P~v~~~~~rA~~~G~~  335 (399)
                      +++|+|+.++... .+.|.+        +.++|++++|++.++.++||+..             +               
T Consensus        68 ~~Vvgis~d~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~~~v~~~ygv~~-------------~---------------  118 (170)
T d1zofa1          68 FNVIGVSIDSEQV-HFAWKNTPVEKGGIGQVSFPMVADITKSISRDYDVLF-------------E---------------  118 (170)
T ss_dssp             EEEEEEESSCHHH-HHHHHTSCGGGTCCCCCSSCEEECTTSHHHHHTTCEE-------------T---------------
T ss_pred             eeEecccccchhh-HHHHHhhhhhcccccCcccccccccccHHHHHcCCCc-------------c---------------
Confidence            9999999998865 555543        26899999999999999999841             0               


Q ss_pred             cccCCCCcccceEEEEecCCCcEEEEEecCCCCCCCCHHHHHHHHHhhhhhhccc
Q 015842          336 QNFKGEGEIKGGLFIVGRGRSGIAYQFIERNFGDWAPLAEVIEICTQLQDQQRDQ  390 (399)
Q Consensus       336 gn~~GD~~qLGGtFVId~gGg~I~yah~d~d~gDrad~eeVLaAl~~l~~~~~~~  390 (399)
                           ++...+++||||++| +|+|.+++.....+ +++++|+++++|+...+.+
T Consensus       119 -----~~~~~r~tfvID~~G-~I~~~~~~~~~~~~-~~~eiL~~l~aLq~~~~~~  166 (170)
T d1zofa1         119 -----EAIALRGAFLIDKNM-KVRHAVINDLPLGR-NADEMLRMVDALLHFEEHG  166 (170)
T ss_dssp             -----TTEECEEEEEEETTT-EEEEEEEESSSCCC-HHHHHHHHHHHHHHHHSSC
T ss_pred             -----ccceeEEEEEEcCCC-eEEEEEEeCCCCCC-CHHHHHHHHHHhhhHHhcC
Confidence                 123568999999996 99999987765444 7899999999998766543

>d1prxa_ c.47.1.10 (A:) 1-Cys peroxiredoxin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: 1-Cys peroxiredoxin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=4.2e-23  Score=191.88  Aligned_cols=156  Identities=17%  Similarity=0.179  Sum_probs=131.0

Q ss_pred             CCCCCCCCcccccCccccccchhhhcccccccccCCCceechhhccCCCEEEEeecCCCCcchHHHHHHHHhccchhhhc
Q 015842          183 PVNEKVAPYSAIENISIQKLTPEYKIGMERLVKTKTPPMKALELWRESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDAL  262 (399)
Q Consensus       183 ~~~~~~apl~~L~~i~l~~l~~~~~~g~~~~v~~~G~~VsLsdL~~~~pvVLvFyRg~gCP~Cr~el~~L~e~~pef~al  262 (399)
                      +.+|+.||.|.|++.                   +|+ |+|+++..++++||+||++.|||+|..|+.+|++.+++|+++
T Consensus         1 L~VGd~APdF~l~~~-------------------~G~-v~Lsd~~g~k~vVLfFyP~dftpvC~~El~~~~~~~~~f~~~   60 (220)
T d1prxa_           1 LLLGDVAPNFEANTT-------------------VGR-IRFHDFLGDSWGILFSHPRDFTPVCTTELGRAAKLAPEFAKR   60 (220)
T ss_dssp             CCTTCBCCCCEEEET-------------------TEE-EEHHHHHTTSEEEEEEESCSSCHHHHHHHHHHHHHHHHHHTT
T ss_pred             CCCCCCCCCcEeecC-------------------CCC-EEeHHHcCCCeEEEEEECCCCCCcchhhHHHHHHHHHHhhcc
Confidence            368999998887665                   365 999999888899999999999999999999999999999999


Q ss_pred             CCeEEEEecCChhhHHhhhcC-----------CCCCceeEeccchHHHHHhCCCcccccccccccccCHHHHHHHHHHHh
Q 015842          263 GIQLFAVLHEYIESEVKDFWP-----------RYWGGVVVYDQGMEFFKALGGGKLLKDKFLSGFLLNPRAIANYKRART  331 (399)
Q Consensus       263 GV~LVaIspE~~e~~ik~F~~-----------~~l~f~VLsDp~r~lYkaLGl~r~~r~s~lsgfl~~P~v~~~~~rA~~  331 (399)
                      |++|++||.++.+. +..|.+           ..++|++++|+++++.++||+-.             +.          
T Consensus        61 g~~v~giS~Ds~~s-h~~~~~~~~~~~~~~~~~~l~fpllsD~~~~va~~ygv~~-------------~~----------  116 (220)
T d1prxa_          61 NVKLIALSIDSVED-HLAWSKDINAYNSEEPTEKLPFPIIDDRNRELAILLGMLD-------------PA----------  116 (220)
T ss_dssp             TEEEEEEESSCHHH-HHHHHHHHHHHTTSCCCSCCSSCEEECTTCHHHHHTTSSC-------------SC----------
T ss_pred             cceeeccccccccc-hhhhhhhhhhccccccccCcccccccCcccHHHHHhCCcc-------------cc----------
Confidence            99999999998865 444431           46899999999999999999942             10          


Q ss_pred             cCCccccCCCCcccceEEEEecCCCcEEEEEecCCCCCCCCHHHHHHHHHhhhhhh
Q 015842          332 LGVEQNFKGEGEIKGGLFIVGRGRSGIAYQFIERNFGDWAPLAEVIEICTQLQDQQ  387 (399)
Q Consensus       332 ~G~~gn~~GD~~qLGGtFVId~gGg~I~yah~d~d~gDrad~eeVLaAl~~l~~~~  387 (399)
                         .++..|-+..+.++||||++| +|+|.+++.....| +++|||++++++|-..
T Consensus       117 ---~~~~~~~~~~~RatFIID~~g-~Ir~~~~~~~~~gR-~~dEiLr~l~alq~~~  167 (220)
T d1prxa_         117 ---EKDEKGMPVTARVVFVFGPDK-KLKLSILYPATTGR-NFDEILRVVISLQLTA  167 (220)
T ss_dssp             ---TTCSSSCCTTCCEEEEECTTS-BEEEEEECCTTBCC-CHHHHHHHHHHHHHHH
T ss_pred             ---ccccccceeeeEEEEEEcCcc-ceeEEEEecCCccc-chHHHHHHHHHHhhhh
Confidence               011123446789999999996 99999999999888 9999999999998544

>d1e2ya_ c.47.1.10 (A:) Tryparedoxin peroxidase (thioredoxin peroxidase homologue) {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Tryparedoxin peroxidase (thioredoxin peroxidase homologue)
species: Crithidia fasciculata [TaxId: 5656]

Probab=99.89  E-value=6.6e-23  Score=180.12  Aligned_cols=156  Identities=14%  Similarity=0.087  Sum_probs=125.1

Q ss_pred             CCCCCCCCCcccccCccccccchhhhcccccccccCCCceechhhccCCCEEEEeecCCCCcchHHHHHHHHhccchhhh
Q 015842          182 PPVNEKVAPYSAIENISIQKLTPEYKIGMERLVKTKTPPMKALELWRESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDA  261 (399)
Q Consensus       182 a~~~~~~apl~~L~~i~l~~l~~~~~~g~~~~v~~~G~~VsLsdL~~~~pvVLvFyRg~gCP~Cr~el~~L~e~~pef~a  261 (399)
                      ..++|+.||.|.++.+ +.              +.+|++|+|+++ +++++||.||++.|||+|+.++.+|++.+++|++
T Consensus         2 ~~kvG~~APdF~~~~~-l~--------------d~~g~~vsLsd~-~GK~vVl~F~p~~~c~~C~~e~~~l~~~~~~~~~   65 (167)
T d1e2ya_           2 AAKLNHPAPEFDDMAL-MP--------------NGTFKKVSLSSY-KGKYVVLFFYPMDFTFVCPTEIIQFSDDAKRFAE   65 (167)
T ss_dssp             CCCTTSBCCCCEEEEE-CS--------------SSCEEEEEGGGG-TTSEEEEEECSCSSCSSCCHHHHHHHHTHHHHHT
T ss_pred             CccCCCCCCCCccccc-cc--------------CCCCcEEeHHHH-CCCeEEEEEcccccccccchhhHHHHHHHHHhhc
Confidence            3589999998874322 11              125899999995 7779999999999999999999999999999999


Q ss_pred             cCCeEEEEecCChhhHHhhhcC--------CCCCceeEeccchHHHHHhCCCcccccccccccccCHHHHHHHHHHHhcC
Q 015842          262 LGIQLFAVLHEYIESEVKDFWP--------RYWGGVVVYDQGMEFFKALGGGKLLKDKFLSGFLLNPRAIANYKRARTLG  333 (399)
Q Consensus       262 lGV~LVaIspE~~e~~ik~F~~--------~~l~f~VLsDp~r~lYkaLGl~r~~r~s~lsgfl~~P~v~~~~~rA~~~G  333 (399)
                      .|+.+++|+.++... ...|..        ...+|++++|+++++.++||+..             +             
T Consensus        66 ~~~~v~~is~d~~~~-~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~y~v~~-------------~-------------  118 (167)
T d1e2ya_          66 INTEVISCSCDSEYS-HLQWTSVDRKKGGLGPMAIPMLADKTKAIARAYGVLD-------------E-------------  118 (167)
T ss_dssp             TTEEEEEEESSCHHH-HHHHHHSCGGGTCCCCCSSCEEECTTCHHHHHHTCEE-------------T-------------
T ss_pred             CceEEEeecCCcHHh-HHHHHhhHHHhcccccccccccccchhHHHHHcCCCc-------------c-------------
Confidence            999999999988764 444431        24789999999999999999842             0             


Q ss_pred             CccccCCCCcccceEEEEecCCCcEEEEEecCCCCCCCCHHHHHHHHHhhhhhhc
Q 015842          334 VEQNFKGEGEIKGGLFIVGRGRSGIAYQFIERNFGDWAPLAEVIEICTQLQDQQR  388 (399)
Q Consensus       334 ~~gn~~GD~~qLGGtFVId~gGg~I~yah~d~d~gDrad~eeVLaAl~~l~~~~~  388 (399)
                            ..+...|++||||++| +|+|.|++.....+ ++++||+++++++-...
T Consensus       119 ------~~g~~~r~tfvID~~G-~Ir~~~~~~~~~~~-~~~evL~~l~alq~~~~  165 (167)
T d1e2ya_         119 ------DSGVAYRGVFIIDPNG-KLRQIIINDMPIGR-NVEEVIRLVEALQFVEE  165 (167)
T ss_dssp             ------TTTEECEEEEEECTTS-BEEEEEEECTTBCC-CHHHHHHHHHHHHHHHH
T ss_pred             ------cCCCceeEEEEECCCC-EEEEEEEcCCCCCC-CHHHHHHHHHHHhHHHh
Confidence                  1124568999999996 99999988754333 78999999999885543

>d1xvwa1 c.47.1.10 (A:1-153) Putative peroxiredoxin Rv2238c/MT2298 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Putative peroxiredoxin Rv2238c/MT2298
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.88  E-value=1.3e-22  Score=174.83  Aligned_cols=148  Identities=15%  Similarity=0.074  Sum_probs=122.5

Q ss_pred             CCCCCCCCcccccCccccccchhhhcccccccccCCCceechhhccCCCEEEEeecCCCCcchHHHHHHHHhccchhhhc
Q 015842          183 PVNEKVAPYSAIENISIQKLTPEYKIGMERLVKTKTPPMKALELWRESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDAL  262 (399)
Q Consensus       183 ~~~~~~apl~~L~~i~l~~l~~~~~~g~~~~v~~~G~~VsLsdL~~~~pvVLvFyRg~gCP~Cr~el~~L~e~~pef~al  262 (399)
                      +++|+.||.|.|+|.                   +|++++|+++..++++||+||++.|||.|+.++..|.+.++++.+.
T Consensus         2 l~vG~~aPdF~l~d~-------------------~G~~~slsd~~g~~~vvl~~~~~~~cp~C~~e~~~l~~~~~~~~~~   62 (153)
T d1xvwa1           2 LNVGATAPDFTLRDQ-------------------NQQLVTLRGYRGAKNVLLVFFPLAFTGICQGELDQLRDHLPEFEND   62 (153)
T ss_dssp             CCTTSBCCCCEEECT-------------------TSCEEEGGGGTTTCEEEEEECSCTTSSHHHHHHHHHHHTGGGTSSS
T ss_pred             CCCcCCCcCeEEECC-------------------CCCEEeHHHHcCCCcEEEEecccccccchhhhhhhhhhhhhhhccc
Confidence            468999998888776                   5999999999888899999999999999999999999999999999


Q ss_pred             CCeEEEEecCChhhHHhhhcC-CCCCceeEecc--chHHHHHhCCCcccccccccccccCHHHHHHHHHHHhcCCccccC
Q 015842          263 GIQLFAVLHEYIESEVKDFWP-RYWGGVVVYDQ--GMEFFKALGGGKLLKDKFLSGFLLNPRAIANYKRARTLGVEQNFK  339 (399)
Q Consensus       263 GV~LVaIspE~~e~~ik~F~~-~~l~f~VLsDp--~r~lYkaLGl~r~~r~s~lsgfl~~P~v~~~~~rA~~~G~~gn~~  339 (399)
                      |+++|+|++++++. ++.|.. +.++|++++|.  +..++++||+..            .                    
T Consensus        63 ~~~vi~vs~d~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~ygv~~------------~--------------------  109 (153)
T d1xvwa1          63 DSAALAISVGPPPT-HKIWATQSGFTFPLLSDFWPHGAVSQAYGVFN------------E--------------------  109 (153)
T ss_dssp             SEEEEEEESCCHHH-HHHHHHHHTCCSCEEECTTTTTHHHHHTTCEE------------T--------------------
T ss_pred             ccccccccchhhhH-HHHHhhhhccceeEEecccccchhHHHhhhhh------------h--------------------
Confidence            99999999999875 788875 78899999886  678999998731            0                    


Q ss_pred             CCCcccceEEEEecCCCcEEEEEecCCCCCCCCHHHHHHHHHhhh
Q 015842          340 GEGEIKGGLFIVGRGRSGIAYQFIERNFGDWAPLAEVIEICTQLQ  384 (399)
Q Consensus       340 GD~~qLGGtFVId~gGg~I~yah~d~d~gDrad~eeVLaAl~~l~  384 (399)
                      ..++..|++||||++| +|+|.|+.. .++..+..++.++|.+|+
T Consensus       110 ~~g~~~r~tfvID~~G-~I~~~~~~~-~~~~~~~~~~~~~L~aL~  152 (153)
T d1xvwa1         110 QAGIANRGTFVVDRSG-IIRFAEMKQ-PGEVRDQRLWTDALAALT  152 (153)
T ss_dssp             TTTEECSEEEEECTTS-BEEEEEECC-TTCCCCHHHHHHHHHHTC
T ss_pred             ccCceeeeEEEECCCC-EEEEEEEeC-CCcccCHHHHHHHHHhhc
Confidence            1124457999999996 999999855 344445666777776654

>d1we0a1 c.47.1.10 (A:1-166) Alkyl hydroperoxide reductase AhpC {Amphibacillus xylanus [TaxId: 1449]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Alkyl hydroperoxide reductase AhpC
species: Amphibacillus xylanus [TaxId: 1449]

Probab=99.88  E-value=9.9e-23  Score=180.57  Aligned_cols=154  Identities=10%  Similarity=0.064  Sum_probs=125.6

Q ss_pred             CCCCCCCcccccCccccccchhhhcccccccccCCCceechhhccCCCEEEEeecCCCCcchHHHHHHHHhccchhhhcC
Q 015842          184 VNEKVAPYSAIENISIQKLTPEYKIGMERLVKTKTPPMKALELWRESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALG  263 (399)
Q Consensus       184 ~~~~~apl~~L~~i~l~~l~~~~~~g~~~~v~~~G~~VsLsdL~~~~pvVLvFyRg~gCP~Cr~el~~L~e~~pef~alG  263 (399)
                      .+|++||.|.|+..     .+          ..++++|+|+++ +++++||.||++.|||.|+.++.+|++.+++|+++|
T Consensus         2 lvG~~aP~F~l~~~-----~~----------g~~~~~vslsd~-~GK~vvl~F~p~~~~p~C~~e~~~~~~~~~~f~~~g   65 (166)
T d1we0a1           2 LIGTEVQPFRAQAF-----QS----------GKDFFEVTEADL-KGKWSIVVFYPADFSFVCPTELEDVQKEYAELKKLG   65 (166)
T ss_dssp             CTTCBCCCCEEEEE-----CS----------SSCCEEEETTTT-SSSEEEEEECSCTTCSSCTHHHHHHHHHHHHHHHTT
T ss_pred             CCCCcCCCCEEeee-----cC----------CcceeEeeHHHh-CCCeEEEEEecccCCcHHHHHHHHHHHHHHhhcccc
Confidence            47899997777654     21          114678999996 777899999999999999999999999999999999


Q ss_pred             CeEEEEecCChhhHHhhhcC-----CCCCceeEeccchHHHHHhCCCcccccccccccccCHHHHHHHHHHHhcCCcccc
Q 015842          264 IQLFAVLHEYIESEVKDFWP-----RYWGGVVVYDQGMEFFKALGGGKLLKDKFLSGFLLNPRAIANYKRARTLGVEQNF  338 (399)
Q Consensus       264 V~LVaIspE~~e~~ik~F~~-----~~l~f~VLsDp~r~lYkaLGl~r~~r~s~lsgfl~~P~v~~~~~rA~~~G~~gn~  338 (399)
                      +.+|+||.++++. .+.|.+     ..++|++++|++.++.++||+..             +                  
T Consensus        66 ~~vv~IS~D~~~~-~~~~~~~~~~~~~~~fpll~D~~~~v~~~ygv~~-------------~------------------  113 (166)
T d1we0a1          66 VEVYSVSTDTHFV-HKAWHENSPAVGSIEYIMIGDPSQTISRQFDVLN-------------E------------------  113 (166)
T ss_dssp             EEEEEEESSCHHH-HHHHHHSCHHHHTCCSEEEECTTCHHHHHTTCEE-------------T------------------
T ss_pred             eEEEecccccHHH-HHHHhhhhhhhcccccccccCcccHHHHHhCCCc-------------c------------------
Confidence            9999999998864 566653     35899999999999999999841             0                  


Q ss_pred             CCCCcccceEEEEecCCCcEEEEEecCCCCCCCCHHHHHHHHHhhhhhhc
Q 015842          339 KGEGEIKGGLFIVGRGRSGIAYQFIERNFGDWAPLAEVIEICTQLQDQQR  388 (399)
Q Consensus       339 ~GD~~qLGGtFVId~gGg~I~yah~d~d~gDrad~eeVLaAl~~l~~~~~  388 (399)
                       ..++..|++||||++| +|+|.++......| +++++|+++++++...+
T Consensus       114 -~~~~~~r~tfvID~~G-~I~~~~i~~~~~~r-~~~eil~~lkal~~~~~  160 (166)
T d1we0a1         114 -ETGLADRGTFIIDPDG-VIQAIEINADGIGR-DASTLINKVKAAQYVRE  160 (166)
T ss_dssp             -TTTEECEEEEEECTTS-BEEEEEEECTTSCC-CTTHHHHHHHHHHHHHT
T ss_pred             -ccCcccceEEEECCCC-cEEEEEEcCCCCCC-CHHHHHHHHHhcchhhh
Confidence             0124568999999996 99999998766544 67899999999886554

>d1zyea1 c.47.1.10 (A:6-163) Peroxiredoxin-3 (AOP-1, SP-22) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Peroxiredoxin-3 (AOP-1, SP-22)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.87  E-value=3.1e-22  Score=175.65  Aligned_cols=147  Identities=16%  Similarity=0.115  Sum_probs=120.7

Q ss_pred             CCCCcccccCccccccchhhhcccccccccCCCceechhhccCCCEEEEeecCCCCcchHHHHHHHHhccchhhhcCCeE
Q 015842          187 KVAPYSAIENISIQKLTPEYKIGMERLVKTKTPPMKALELWRESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQL  266 (399)
Q Consensus       187 ~~apl~~L~~i~l~~l~~~~~~g~~~~v~~~G~~VsLsdL~~~~pvVLvFyRg~gCP~Cr~el~~L~e~~pef~alGV~L  266 (399)
                      +.||.|.|+.+                .+.+|++|+|+++ +++++||.||+..|||.|..|+.++++.+++|.+.|+.+
T Consensus         1 ~~AP~F~l~~~----------------~~~~~~~vsL~d~-~Gk~vVL~Fyp~~~tp~C~~e~~~~~~~~~~~~~~~~~v   63 (158)
T d1zyea1           1 QHAPYFKGTAV----------------VSGEFKEISLDDF-KGKYLVLFFYPLDFTFVCPTEIIAFSDKASEFHDVNCEV   63 (158)
T ss_dssp             SBCCCCEEEEE----------------CSSSEEEEEGGGG-TTSEEEEEECSCTTCSSSHHHHHHHHHHHHHHHHTTEEE
T ss_pred             CCCCCCcccee----------------eCCCccEEeHHHh-CCCeEEEEEeehhcCCccccchhhHHHhHHHhhcCCceE
Confidence            46887776544                1335789999996 667999999999999999999999999999999999999


Q ss_pred             EEEecCChhhHHhhhcC--------CCCCceeEeccchHHHHHhCCCcccccccccccccCHHHHHHHHHHHhcCCcccc
Q 015842          267 FAVLHEYIESEVKDFWP--------RYWGGVVVYDQGMEFFKALGGGKLLKDKFLSGFLLNPRAIANYKRARTLGVEQNF  338 (399)
Q Consensus       267 VaIspE~~e~~ik~F~~--------~~l~f~VLsDp~r~lYkaLGl~r~~r~s~lsgfl~~P~v~~~~~rA~~~G~~gn~  338 (399)
                      ++||++++.. .+.|.+        +.++|++++|++.++.++||+..           .                    
T Consensus        64 igIS~d~~~~-~~~~~~~~~~~~~~~~~~f~llsD~~~~~~~~ygv~~-----------~--------------------  111 (158)
T d1zyea1          64 VAVSVDSHFS-HLAWINTPRKNGGLGHMNIALLSDLTKQISRDYGVLL-----------E--------------------  111 (158)
T ss_dssp             EEEESSCHHH-HHHHHTSCGGGTCCCSCSSEEEECTTSHHHHHTTCEE-----------T--------------------
T ss_pred             EeccCcCHHH-HHHHHhhhHhhccccccccccccccccHHHHHHHhcc-----------c--------------------
Confidence            9999999875 667764        26899999999999999999852           0                    


Q ss_pred             CCCCcccceEEEEecCCCcEEEEEecCCCCCCCCHHHHHHHHHhhhh
Q 015842          339 KGEGEIKGGLFIVGRGRSGIAYQFIERNFGDWAPLAEVIEICTQLQD  385 (399)
Q Consensus       339 ~GD~~qLGGtFVId~gGg~I~yah~d~d~gDrad~eeVLaAl~~l~~  385 (399)
                       ..++..+++||||++| +|+|.+++.....+ +++|||++++++|-
T Consensus       112 -~~g~~~R~tfvID~~G-~I~~~~i~~~~~~~-~~~EiL~~lkalq~  155 (158)
T d1zyea1         112 -GPGLALRGLFIIDPNG-VIKHLSVNDLPVGR-SVEETLRLVKAFQF  155 (158)
T ss_dssp             -TTTEECEEEEEECTTS-BEEEEEEECTTCCC-CHHHHHHHHHHHHH
T ss_pred             -cCCccccEEEEECCCC-EEEEEEEeCCCCCC-CHHHHHHHHHHhhh
Confidence             1123468999999996 99999977544333 68999999998873

>d2h01a1 c.47.1.10 (A:2-171) Thioredoxin peroxidase 2 (thioredoxin peroxidase B, 2-cys peroxiredoxin) {Plasmodium yoelii [TaxId: 5861]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin peroxidase 2 (thioredoxin peroxidase B, 2-cys peroxiredoxin)
species: Plasmodium yoelii [TaxId: 5861]

Probab=99.86  E-value=6.5e-22  Score=175.88  Aligned_cols=152  Identities=9%  Similarity=0.058  Sum_probs=124.6

Q ss_pred             CCCcccccCccccccchhhhcccccccccCCCceechhhccCCCEEEEeecCCCCcchHHHHHHHHhccchhhhcCCeEE
Q 015842          188 VAPYSAIENISIQKLTPEYKIGMERLVKTKTPPMKALELWRESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLF  267 (399)
Q Consensus       188 ~apl~~L~~i~l~~l~~~~~~g~~~~v~~~G~~VsLsdL~~~~pvVLvFyRg~gCP~Cr~el~~L~e~~pef~alGV~LV  267 (399)
                      +||.|.|+.+.     +          +.+|++|+|+|+..++++||+||++.|||+|..|+++|++.+++|+++|+.+|
T Consensus         1 kAPdF~l~~~~-----g----------d~~~~~vsL~d~~g~k~vVl~FyP~~~tp~Ct~e~~~f~~~~~~f~~~g~~vi   65 (170)
T d2h01a1           1 QAPSFKAEAVF-----G----------DNTFGEVSLSDFIGKKYVLLYFYPLDFTFVCPSEIIALDKALDSFKERNVELL   65 (170)
T ss_dssp             BCCCCEEEEEC-----T----------TSCEEEEEGGGGTTTCEEEEEECSCSSCSSCCHHHHHHHHTHHHHHHTTEEEE
T ss_pred             CCCCeEeeeec-----C----------CCCccEEehHHHCCCCeEEEEEECCCCCCccchhhHHHhhhhhhhhcCCeeEe
Confidence            47877776551     0          22467899999988789999999999999999999999999999999999999


Q ss_pred             EEecCChhhHHhhhcC--------CCCCceeEeccchHHHHHhCCCcccccccccccccCHHHHHHHHHHHhcCCccccC
Q 015842          268 AVLHEYIESEVKDFWP--------RYWGGVVVYDQGMEFFKALGGGKLLKDKFLSGFLLNPRAIANYKRARTLGVEQNFK  339 (399)
Q Consensus       268 aIspE~~e~~ik~F~~--------~~l~f~VLsDp~r~lYkaLGl~r~~r~s~lsgfl~~P~v~~~~~rA~~~G~~gn~~  339 (399)
                      +||++++.. .+.|.+        ..++|++++|+++.+.++||+..                                 
T Consensus        66 gIS~D~~~~-~~~~~~~~~~~~~~~~~~f~llsD~~~~~~~~ygv~~---------------------------------  111 (170)
T d2h01a1          66 GCSVDSKFT-HLAWKKTPLSQGGIGNIKHTLISDISKSIARSYDVLF---------------------------------  111 (170)
T ss_dssp             EEESSCHHH-HHHHHTSCGGGTCCCSCSSEEEECTTSHHHHHTTCEE---------------------------------
T ss_pred             cccCCcHHH-HHhHhhhhhhhccccccCCceeEcCccHHHHHhCCcc---------------------------------
Confidence            999999865 566653        34899999999999999999841                                 


Q ss_pred             CCCcccceEEEEecCCCcEEEEEecCCCCCCCCHHHHHHHHHhhhhhhccc
Q 015842          340 GEGEIKGGLFIVGRGRSGIAYQFIERNFGDWAPLAEVIEICTQLQDQQRDQ  390 (399)
Q Consensus       340 GD~~qLGGtFVId~gGg~I~yah~d~d~gDrad~eeVLaAl~~l~~~~~~~  390 (399)
                      ...+..+++||||++| +|+|.+++. .....++++||+++++++.+.+.+
T Consensus       112 ~~~~~~R~tfiId~~G-~I~~~~~~~-~~~~~~~~eil~~l~~lq~~~~~~  160 (170)
T d2h01a1         112 NESVALRAFVLIDKQG-VVQHLLVNN-LALGRSVDEILRLIDALQHHEKYG  160 (170)
T ss_dssp             TTTEECCEEEEECTTS-BEEEEEEGG-GSSGGGHHHHHHHHHHHHHHHHHC
T ss_pred             ccccceeeeEEEcCCC-eEEEEEEec-CCCCCCHHHHHHHHHHhhhhhhcC
Confidence            0113457999999996 999999865 444458999999999998776554

>d2a4va1 c.47.1.10 (A:59-214) Peroxiredoxin dot5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Peroxiredoxin dot5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.86  E-value=2.7e-22  Score=175.30  Aligned_cols=149  Identities=14%  Similarity=0.138  Sum_probs=118.3

Q ss_pred             CCCCCCCCCCcccccCccccccchhhhcccccccccCCCceechhhccCCCEEE-EeecCCCCcchHHHHHHHHhccchh
Q 015842          181 APPVNEKVAPYSAIENISIQKLTPEYKIGMERLVKTKTPPMKALELWRESPAVL-LCIRRPGCIMCRAEAHQLYAKKPIF  259 (399)
Q Consensus       181 ~a~~~~~~apl~~L~~i~l~~l~~~~~~g~~~~v~~~G~~VsLsdL~~~~pvVL-vFyRg~gCP~Cr~el~~L~e~~pef  259 (399)
                      ..+++|+.||.|.|++.                   +|+.++|++++.++++|| .|||+.|||+|+.++.+|++.+++|
T Consensus         3 ~~L~vG~~aP~f~L~~~-------------------~g~~~~l~~~~~k~~~vvlff~p~~~cp~C~~~~~~~~~~~~~~   63 (156)
T d2a4va1           3 NELEIGDPIPDLSLLNE-------------------DNDSISLKKITENNRVVVFFVYPRASTPGSTRQASGFRDNYQEL   63 (156)
T ss_dssp             TCCCTTCBCCSCEEECT-------------------TSCEEEHHHHHHHCSEEEEEECSSSSSHHHHHHHHHHHHHHHHH
T ss_pred             ccCCCCCCCCCeEEECC-------------------CCCEEeeHHHcCCccEEEEEecccccCcchhhhhHHHHHHHHHH
Confidence            35689999998888776                   599999999987777555 5578999999999999999999999


Q ss_pred             hhcCCeEEEEecCChhhHHhhhcC-CCCCceeEeccchHHHHHhCCCcccccccccccccCHHHHHHHHHHHhcCCcccc
Q 015842          260 DALGIQLFAVLHEYIESEVKDFWP-RYWGGVVVYDQGMEFFKALGGGKLLKDKFLSGFLLNPRAIANYKRARTLGVEQNF  338 (399)
Q Consensus       260 ~alGV~LVaIspE~~e~~ik~F~~-~~l~f~VLsDp~r~lYkaLGl~r~~r~s~lsgfl~~P~v~~~~~rA~~~G~~gn~  338 (399)
                      ++ ++.+++|+.++++. +++|.+ +.++|++|+|++.+++++||+...            |             .    
T Consensus        64 ~~-~~~~~~is~d~~~~-~~~f~~~~~l~f~~L~D~~~~v~~~ygv~~~------------~-------------~----  112 (156)
T d2a4va1          64 KE-YAAVFGLSADSVTS-QKKFQSKQNLPYHLLSDPKREFIGLLGAKKT------------P-------------L----  112 (156)
T ss_dssp             TT-TCEEEEEESCCHHH-HHHHHHHHTCSSEEEECTTCHHHHHHTCBSS------------S-------------S----
T ss_pred             hh-ccceeeeccchhhh-HHhhhcccCccceeccchHHHHHHHcCCCcc------------c-------------c----
Confidence            76 45689999998876 888886 789999999999999999998520            0             0    


Q ss_pred             CCCCcccceEEEEecCCCcEEEEEecCCCCCCC--CHHHHHHHHHhhh
Q 015842          339 KGEGEIKGGLFIVGRGRSGIAYQFIERNFGDWA--PLAEVIEICTQLQ  384 (399)
Q Consensus       339 ~GD~~qLGGtFVId~gGg~I~yah~d~d~gDra--d~eeVLaAl~~l~  384 (399)
                         ......+||+ .+| +|+|.|+......++  .+++||+++++++
T Consensus       113 ---~~~~r~~~i~-~dg-~i~~~~~~~~~~~~~~~~~~evl~~lk~l~  155 (156)
T d2a4va1         113 ---SGSIRSHFIF-VDG-KLKFKRVKISPEVSVNDAKKEVLEVAEKFK  155 (156)
T ss_dssp             ---SCBCCEEEEE-ETT-EEEEEEESCCHHHHHHHHHHHHHHHHHHTT
T ss_pred             ---CCeeEEEEEE-ECC-eEEEEEEEeCCCCCcchHHHHHHHHHHHhc
Confidence               0112345555 575 899999876554443  3678999999876

>d1uula_ c.47.1.10 (A:) Tryparedoxin peroxidase (thioredoxin peroxidase homologue) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Tryparedoxin peroxidase (thioredoxin peroxidase homologue)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=99.86  E-value=1.7e-21  Score=177.46  Aligned_cols=160  Identities=15%  Similarity=0.134  Sum_probs=127.6

Q ss_pred             CCCCCCcccccCccccccchhhhcccccccccCCCceechhhccCCCEEEEeecCCCCcchHHHHHHHHhccchhhhcCC
Q 015842          185 NEKVAPYSAIENISIQKLTPEYKIGMERLVKTKTPPMKALELWRESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALGI  264 (399)
Q Consensus       185 ~~~~apl~~L~~i~l~~l~~~~~~g~~~~v~~~G~~VsLsdL~~~~pvVLvFyRg~gCP~Cr~el~~L~e~~pef~alGV  264 (399)
                      .+..||.|.++.+ +.              +.+|++|+|+++ +++++||+||++.|||.|..|+.+|++.+++|+++|+
T Consensus         5 ~~~PAPdFtl~a~-l~--------------d~~g~~vsLsd~-~GK~vVL~FyP~~~t~~C~~E~~~f~~~~~~f~~~g~   68 (194)
T d1uula_           5 DLHPAPDFNETAL-MP--------------NGTFKKVALTSY-KGKWLVLFFYPMDFTFVCPTEICQFSDRVKEFSDIGC   68 (194)
T ss_dssp             TTSBCCCCEEEEE-CT--------------TSCEEEEEGGGG-TTSEEEEEECSCTTCSHHHHHHHHHHHTHHHHHTTTE
T ss_pred             cCCCCCCCccccc-cc--------------CCCCcEEehHHh-CCCeEEEEEEeCCccccchhhhhHHHhhhhhhccCce
Confidence            3456897775432 11              225899999997 6779999999999999999999999999999999999


Q ss_pred             eEEEEecCChhhHHhhhcC--------CCCCceeEeccchHHHHHhCCCcccccccccccccCHHHHHHHHHHHhcCCcc
Q 015842          265 QLFAVLHEYIESEVKDFWP--------RYWGGVVVYDQGMEFFKALGGGKLLKDKFLSGFLLNPRAIANYKRARTLGVEQ  336 (399)
Q Consensus       265 ~LVaIspE~~e~~ik~F~~--------~~l~f~VLsDp~r~lYkaLGl~r~~r~s~lsgfl~~P~v~~~~~rA~~~G~~g  336 (399)
                      +|++||.++... .+.|.+        +.++|++++|+++++.++||+..             +                
T Consensus        69 ~VlgIS~Ds~~s-~~~~~~~~~~~~~~~~l~fpllsD~~~~v~~~ygv~~-------------~----------------  118 (194)
T d1uula_          69 EVLACSMDSEYS-HLAWTSIERKRGGLGQMNIPILADKTKCIMKSYGVLK-------------E----------------  118 (194)
T ss_dssp             EEEEEESSCHHH-HHHHHHSCGGGTCCCSCSSCEEECTTCHHHHHHTCEE-------------T----------------
T ss_pred             EEEEEecCchhh-hhhhhhhhhhhccccCCCcceeeCCcchHHHHcCCee-------------c----------------
Confidence            999999998865 566642        35899999999999999999841             0                


Q ss_pred             ccCCCCcccceEEEEecCCCcEEEEEecCCCCCCCCHHHHHHHHHhhhhhh----------cccccccc
Q 015842          337 NFKGEGEIKGGLFIVGRGRSGIAYQFIERNFGDWAPLAEVIEICTQLQDQQ----------RDQSETIK  395 (399)
Q Consensus       337 n~~GD~~qLGGtFVId~gGg~I~yah~d~d~gDrad~eeVLaAl~~l~~~~----------~~~~~~~~  395 (399)
                         .+++..++|||||++| .|+|.+++.-.-+| +++|+|++++++|-..          ++|.++|+
T Consensus       119 ---~~~~~~R~tfvID~~G-~I~~~~~~~~~~~r-~~~E~Lr~l~alQ~~~~~~~~cp~~W~~g~~~~~  182 (194)
T d1uula_         119 ---EDGVAYRGLFIIDPKQ-NLRQITVNDLPVGR-DVDEALRLVKAFQFVEKHGEVCPANWKPGDKTMK  182 (194)
T ss_dssp             ---TTTEECEEEEEECTTS-BEEEEEEECTTBCC-CHHHHHHHHHHHHHHHHHSCBBCTTCCTTSCCBC
T ss_pred             ---cCCceEEEEEEECCCC-eEEEEEEecCCCCc-CHHHHHHHHHHhhhHhhcCCCcCCCCCCCCcccc
Confidence               1234568999999996 99999976644444 7799999999998432          56666665

>d1qmva_ c.47.1.10 (A:) Thioredoxin peroxidase 2 (thioredoxin peroxidase B, 2-cys peroxiredoxin) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin peroxidase 2 (thioredoxin peroxidase B, 2-cys peroxiredoxin)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=1.9e-21  Score=177.66  Aligned_cols=153  Identities=16%  Similarity=0.100  Sum_probs=125.4

Q ss_pred             CCCCCCCCcccccCccccccchhhhcccccccccCCCceechhhccCCCEEEEeecCCCCcchHHHHHHHHhccchhhhc
Q 015842          183 PVNEKVAPYSAIENISIQKLTPEYKIGMERLVKTKTPPMKALELWRESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDAL  262 (399)
Q Consensus       183 ~~~~~~apl~~L~~i~l~~l~~~~~~g~~~~v~~~G~~VsLsdL~~~~pvVLvFyRg~gCP~Cr~el~~L~e~~pef~al  262 (399)
                      .++|+.||.|.|+.+                .+.+|++|+|+++ +++++||+||+..|||+|..|+.+|++.+++|+++
T Consensus         5 ~~VG~~AP~F~l~~~----------------~d~~~~~v~L~d~-~Gk~~vL~FyP~~~tp~C~~e~~~~~~~~~~f~~~   67 (197)
T d1qmva_           5 ARIGKPAPDFKATAV----------------VDGAFKEVKLSDY-KGKYVVLFFYPLDFTFVCPTEIIAFSNRAEDFRKL   67 (197)
T ss_dssp             BCTTSBCCCCEEEEE----------------ETTEEEEEEGGGG-TTSEEEEEECSCTTSSHHHHHHHHHHHTHHHHHTT
T ss_pred             CcCCCcCCCCCCcce----------------eCCCCcEEeHHHh-CCCeEEEEEecccccccchhhhHHHHHHHHHhccC
Confidence            479999998877644                1234789999996 56799999999999999999999999999999999


Q ss_pred             CCeEEEEecCChhhHHhhhcC--------CCCCceeEeccchHHHHHhCCCcccccccccccccCHHHHHHHHHHHhcCC
Q 015842          263 GIQLFAVLHEYIESEVKDFWP--------RYWGGVVVYDQGMEFFKALGGGKLLKDKFLSGFLLNPRAIANYKRARTLGV  334 (399)
Q Consensus       263 GV~LVaIspE~~e~~ik~F~~--------~~l~f~VLsDp~r~lYkaLGl~r~~r~s~lsgfl~~P~v~~~~~rA~~~G~  334 (399)
                      |+++++||.+++.. .+.|.+        +.++||+++|+++++.++||+..             +              
T Consensus        68 g~~vigIS~D~~~~-~~~~~~~~~~~~~~~~~~fpll~D~~~~va~~ygv~~-------------~--------------  119 (197)
T d1qmva_          68 GCEVLGVSVDSQFT-HLAWINTPRKEGGLGPLNIPLLADVTRRLSEDYGVLK-------------T--------------  119 (197)
T ss_dssp             TEEEEEEESSCHHH-HHHHHTSCGGGTCCCSCSSCEEECTTCHHHHHTTCEE-------------T--------------
T ss_pred             CcEEEEEecCCHHH-HHhhhcchhhhcCcCCCccceEeccchHHHHHhCCCc-------------c--------------
Confidence            99999999999875 677763        25899999999999999999842             0              


Q ss_pred             ccccCCCCcccceEEEEecCCCcEEEEEecCCCCCCCCHHHHHHHHHhhhhhh
Q 015842          335 EQNFKGEGEIKGGLFIVGRGRSGIAYQFIERNFGDWAPLAEVIEICTQLQDQQ  387 (399)
Q Consensus       335 ~gn~~GD~~qLGGtFVId~gGg~I~yah~d~d~gDrad~eeVLaAl~~l~~~~  387 (399)
                           .+++..+++||||++| .|+|.+..... .-.+++|+|+++++++...
T Consensus       120 -----~~g~~~R~tfiID~~g-~Ir~~~~~~~~-~~r~~~E~lr~l~alq~~~  165 (197)
T d1qmva_         120 -----DEGIAYRGLFIIDGKG-VLRQITVNDLP-VGRSVDEALRLVQAFQYTD  165 (197)
T ss_dssp             -----TTTEECEEEEEECTTS-BEEEEEEECTT-BCCCHHHHHHHHHHHHHHH
T ss_pred             -----cCCeeeEEEEEECCCC-cEEEEEecCCC-cccCHHHHHHHHHhhcccc
Confidence                 1234568999999996 99998777532 2245699999999998544

>d2zcta1 c.47.1.10 (A:6-242) Peroxiredoxin {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Peroxiredoxin
species: Aeropyrum pernix [TaxId: 56636]

Probab=99.85  E-value=2.4e-21  Score=182.09  Aligned_cols=150  Identities=15%  Similarity=0.071  Sum_probs=122.0

Q ss_pred             CCCCCCCCcccccCccccccchhhhcccccccccCCCceechhh-c-cCCCEEEEeecCCCCcchHHHHHHHHhccchhh
Q 015842          183 PVNEKVAPYSAIENISIQKLTPEYKIGMERLVKTKTPPMKALEL-W-RESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFD  260 (399)
Q Consensus       183 ~~~~~~apl~~L~~i~l~~l~~~~~~g~~~~v~~~G~~VsLsdL-~-~~~pvVLvFyRg~gCP~Cr~el~~L~e~~pef~  260 (399)
                      |.+|+.||.|.+++.                   +|+ +.+.+. + +++++||+||++.|||.|..|+.+|++.+++|+
T Consensus         1 PlIGd~aPdF~l~t~-------------------~G~-i~~~d~~~~kGk~vVLff~P~dftpvCttEl~~~~~~~~ef~   60 (237)
T d2zcta1           1 PLIGERFPEMEVTTD-------------------HGV-IKLPDHYVSQGKWFVLFSHPADFTPVCTTEFVSFARRYEDFQ   60 (237)
T ss_dssp             CCTTSBCCCEEEEET-------------------TEE-EEETHHHHTTTCEEEEEEESCSSCHHHHHHHHHHHHTHHHHH
T ss_pred             CCCCCCCCCeEEEcC-------------------CCC-EEechHhhcCCCEEEEEEECCCCCccCHHHHHHHHhhhhhhc
Confidence            458999997777654                   364 666554 3 456899999999999999999999999999999


Q ss_pred             hcCCeEEEEecCChhhHHhhhc-------CCCCCceeEeccchHHHHHhCCCcccccccccccccCHHHHHHHHHHHhcC
Q 015842          261 ALGIQLFAVLHEYIESEVKDFW-------PRYWGGVVVYDQGMEFFKALGGGKLLKDKFLSGFLLNPRAIANYKRARTLG  333 (399)
Q Consensus       261 alGV~LVaIspE~~e~~ik~F~-------~~~l~f~VLsDp~r~lYkaLGl~r~~r~s~lsgfl~~P~v~~~~~rA~~~G  333 (399)
                      ++|++||+||.++... .+.|.       ...++|++++|+++++.++||+-.             +.            
T Consensus        61 ~~g~~vigiS~Ds~~s-h~~w~~~~~~~~~~~l~fpllsD~~~~vak~yGv~~-------------~~------------  114 (237)
T d2zcta1          61 RLGVDLIGLSVDSVFS-HIKWKEWIERHIGVRIPFPIIADPQGTVARRLGLLH-------------AE------------  114 (237)
T ss_dssp             HTTEEEEEEESSCHHH-HHHHHHHHHHHHCCCCCSCEEECGGGHHHHHTTCC----------------------------
T ss_pred             cCCcceeeccCCcHHH-HHHHhhhhhhhcccccccccccCcchHHHHHcCCcc-------------cc------------
Confidence            9999999999998764 45554       256999999999999999999831             11            


Q ss_pred             CccccCCCCcccceEEEEecCCCcEEEEEecCCCCCCCCHHHHHHHHHhhhhh
Q 015842          334 VEQNFKGEGEIKGGLFIVGRGRSGIAYQFIERNFGDWAPLAEVIEICTQLQDQ  386 (399)
Q Consensus       334 ~~gn~~GD~~qLGGtFVId~gGg~I~yah~d~d~gDrad~eeVLaAl~~l~~~  386 (399)
                            +.....+++||||++| +|++.+.......| +++|||++++++|-.
T Consensus       115 ------~~~~~~RatFIIDpdG-~Ir~~~~~~~~~gR-~~dEiLr~l~aLQ~~  159 (237)
T d2zcta1         115 ------SATHTVRGVFIVDARG-VIRTMLYYPMELGR-LVDEILRIVKALKLG  159 (237)
T ss_dssp             -------CCTTCCEEEEECTTS-BEEEEEECCTTBCC-CHHHHHHHHHHHHHH
T ss_pred             ------ccccceeeeEEECCCC-EEEEEEEeCCCCCC-CHHHHHHHHHHHhhh
Confidence                  1124578999999996 99999998877777 799999999999843

>d1xcca_ c.47.1.10 (A:) 1-Cys peroxiredoxin {Plasmodium yoelii yoelii [TaxId: 73239]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: 1-Cys peroxiredoxin
species: Plasmodium yoelii yoelii [TaxId: 73239]

Probab=99.85  E-value=1.6e-21  Score=181.26  Aligned_cols=159  Identities=16%  Similarity=0.100  Sum_probs=126.7

Q ss_pred             CCCCCCCCCcccccCccccccchhhhcccccccccCCCceechhhccCCCEEEEeecCCCCcchHHHHHHHHhccchhhh
Q 015842          182 PPVNEKVAPYSAIENISIQKLTPEYKIGMERLVKTKTPPMKALELWRESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDA  261 (399)
Q Consensus       182 a~~~~~~apl~~L~~i~l~~l~~~~~~g~~~~v~~~G~~VsLsdL~~~~pvVLvFyRg~gCP~Cr~el~~L~e~~pef~a  261 (399)
                      +...|++||.|.++...                 .+| .+++.+.++++++||+||++.|||.|..|++++++.+++|++
T Consensus         1 gi~iGd~aPdF~l~~~~-----------------~~g-~i~l~d~~~gk~vVLfFyP~dfTpvCttEl~~f~~~~~eF~~   62 (219)
T d1xcca_           1 GYHLGATFPNFTAKASG-----------------IDG-DFELYKYIENSWAILFSHPNDFTPVCTTELAELGKMHEDFLK   62 (219)
T ss_dssp             CCCTTCBCCCCEECBTT-----------------CSS-CEEHHHHTTTSEEEEECCSCTTCHHHHHHHHHHHHTHHHHHT
T ss_pred             CCcCCCCCCCcEeeccC-----------------CCC-cEEeHHHcCCCeEEEEEEcCCCCcccchhHHHHHHhhhhhcc
Confidence            35789999988776441                 123 689999889999999999999999999999999999999999


Q ss_pred             cCCeEEEEecCChhhHHhhhcC--------CCCCceeEeccchHHHHHhCCCcccccccccccccCHHHHHHHHHHHhcC
Q 015842          262 LGIQLFAVLHEYIESEVKDFWP--------RYWGGVVVYDQGMEFFKALGGGKLLKDKFLSGFLLNPRAIANYKRARTLG  333 (399)
Q Consensus       262 lGV~LVaIspE~~e~~ik~F~~--------~~l~f~VLsDp~r~lYkaLGl~r~~r~s~lsgfl~~P~v~~~~~rA~~~G  333 (399)
                      +|++|++||.++... ++.|.+        +.++|||++|++++++++||+-.             +.            
T Consensus        63 ~~~~vigiS~Ds~~s-h~~w~~~~~~~~~~~~l~fpllsD~~~~va~~ygv~~-------------~~------------  116 (219)
T d1xcca_          63 LNCKLIGFSCNSKES-HDKWIEDIKYYGKLNKWEIPIVCDESRELANKLKIMD-------------EQ------------  116 (219)
T ss_dssp             TTEEEEEEESSCHHH-HHHHHHHHHHHHTCSCCCCCEEECTTSHHHHHHTCEE-------------EE------------
T ss_pred             cceEEEeecCccHhH-HhHHhhhhHhhcccCCCCcccccccccHHHHHhCCcc-------------cc------------
Confidence            999999999999875 566652        36999999999999999999942             00            


Q ss_pred             CccccCCCCcccceEEEEecCCCcEEEEEecCCCCCCCCHHHHHHHHHhhhhhh
Q 015842          334 VEQNFKGEGEIKGGLFIVGRGRSGIAYQFIERNFGDWAPLAEVIEICTQLQDQQ  387 (399)
Q Consensus       334 ~~gn~~GD~~qLGGtFVId~gGg~I~yah~d~d~gDrad~eeVLaAl~~l~~~~  387 (399)
                       .++..|-++...++||||++| +|+|.++.. ..-.-+++|||++++++|-..
T Consensus       117 -~~~~~~~~~~~R~tFiIDp~g-~Ir~~~~~~-~~~gr~~~EiLr~l~aLQ~~~  167 (219)
T d1xcca_         117 -EKDITGLPLTCRCLFFISPEK-KIKATVLYP-ATTGRNAHEILRVLKSLQLTY  167 (219)
T ss_dssp             -EECTTSCEEECEEEEEECTTS-BEEEEEEEC-TTBCCCHHHHHHHHHHHHHHH
T ss_pred             -cccCcccceeeeeeEEEcCcc-eEEEEEEeC-CCcccCHHHHHHHHHHHHHHH
Confidence             011123345568999999996 999998764 333347799999999998444

>d1psqa_ c.47.1.10 (A:) Probable thiol peroxidase PsaD {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Probable thiol peroxidase PsaD
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=99.85  E-value=1.2e-20  Score=165.65  Aligned_cols=148  Identities=10%  Similarity=0.055  Sum_probs=120.1

Q ss_pred             CCCCCCCCCCCcccccCccccccchhhhcccccccccCCCceechhhccCCCEEEEeecCCCCcchHHHHHHHHhccchh
Q 015842          180 QAPPVNEKVAPYSAIENISIQKLTPEYKIGMERLVKTKTPPMKALELWRESPAVLLCIRRPGCIMCRAEAHQLYAKKPIF  259 (399)
Q Consensus       180 ~~a~~~~~~apl~~L~~i~l~~l~~~~~~g~~~~v~~~G~~VsLsdL~~~~pvVLvFyRg~gCP~Cr~el~~L~e~~pef  259 (399)
                      ...+++|+.||.|.|++.                   +|++++|+++ +++++||.||++.|||+|+.++.+|.+.+.++
T Consensus        13 g~~l~vG~~aPdF~L~~~-------------------~g~~vsLsd~-~gk~~vl~f~~~~~~p~C~~~~~~l~~~~~~~   72 (163)
T d1psqa_          13 GKQLQVGDKALDFSLTTT-------------------DLSKKSLADF-DGKKKVLSVVPSIDTGICSTQTRRFNEELAGL   72 (163)
T ss_dssp             SCCCCTTSBCCCCEEECT-------------------TSCEEEGGGG-TTSEEEEEECSCTTSHHHHHHHHHHHHHTTTC
T ss_pred             CCCCCCCCCCCCeEEECC-------------------CCCEEehHHh-CCcEEEEEeccccccccchhhHHHHHHHHHhh
Confidence            367899999998888765                   5999999995 77899999999999999999999999999888


Q ss_pred             hhcCCeEEEEecCChhhHHhhhcC-CCCCc-eeEec-cchHHHHHhCCCcccccccccccccCHHHHHHHHHHHhcCCcc
Q 015842          260 DALGIQLFAVLHEYIESEVKDFWP-RYWGG-VVVYD-QGMEFFKALGGGKLLKDKFLSGFLLNPRAIANYKRARTLGVEQ  336 (399)
Q Consensus       260 ~alGV~LVaIspE~~e~~ik~F~~-~~l~f-~VLsD-p~r~lYkaLGl~r~~r~s~lsgfl~~P~v~~~~~rA~~~G~~g  336 (399)
                      +  |+.+|+|+.+.+.. .+.|.. +..++ .+++| .+..+.++||+..             +                
T Consensus        73 ~--~~~vv~Is~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ygv~~-------------~----------------  120 (163)
T d1psqa_          73 D--NTVVLTVSMDLPFA-QKRWCGAEGLDNAIMLSDYFDHSFGRDYALLI-------------N----------------  120 (163)
T ss_dssp             T--TEEEEEEESSCHHH-HHHHHHHHTCTTSEEEECTTTCHHHHHHTCBC-------------T----------------
T ss_pred             c--ccceEEEEeccHHH-HHHHHHHcCCcceeeeccccchhHHHhheeec-------------c----------------
Confidence            5  79999999998865 566653 33443 34444 6788999998731             0                


Q ss_pred             ccCCCCcccceEEEEecCCCcEEEEEecCCCCCCCCHHHHHHHHHhh
Q 015842          337 NFKGEGEIKGGLFIVGRGRSGIAYQFIERNFGDWAPLAEVIEICTQL  383 (399)
Q Consensus       337 n~~GD~~qLGGtFVId~gGg~I~yah~d~d~gDrad~eeVLaAl~~l  383 (399)
                         ..+...+++||||++| +|+|.++..+++++++.+++|++|++|
T Consensus       121 ---~~~~~~Ra~fvID~~G-~I~y~~~~~~~~~~~~~~~il~alk~L  163 (163)
T d1psqa_         121 ---EWHLLARAVFVLDTDN-TIRYVEYVDNINSEPNFEAAIAAAKAL  163 (163)
T ss_dssp             ---TTCSBCCEEEEECTTC-BEEEEEECSBTTSCCCHHHHHHHHHHC
T ss_pred             ---cccceeEEEEEECCCC-EEEEEEEcCCCCCCCCHHHHHHHHhcC
Confidence               0011235899999996 999999999999999999999999875

>d1qxha_ c.47.1.10 (A:) Thiol peroxidase Tpx {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thiol peroxidase Tpx
species: Escherichia coli [TaxId: 562]

Probab=99.84  E-value=4.7e-21  Score=168.57  Aligned_cols=146  Identities=9%  Similarity=0.079  Sum_probs=119.7

Q ss_pred             CCCCCCCCCCCcccccCccccccchhhhcccccccccCCCceechhhccCCCEEEEeecCCCCcchHHHHHHHHhccchh
Q 015842          180 QAPPVNEKVAPYSAIENISIQKLTPEYKIGMERLVKTKTPPMKALELWRESPAVLLCIRRPGCIMCRAEAHQLYAKKPIF  259 (399)
Q Consensus       180 ~~a~~~~~~apl~~L~~i~l~~l~~~~~~g~~~~v~~~G~~VsLsdL~~~~pvVLvFyRg~gCP~Cr~el~~L~e~~pef  259 (399)
                      ...+++|++||.|.|++.                   +|++|+|+++ +++++||.||+..|||.|+.++..|++.+.++
T Consensus        15 g~~~~vG~~APdF~L~~~-------------------~g~~vsLsd~-~GK~vvl~f~~~~~~p~C~~~~~~l~~~~~~~   74 (164)
T d1qxha_          15 NSIPQAGSKAQTFTLVAK-------------------DLSDVTLGQF-AGKRKVLNIFPSIDTGVCAASVRKFNQLATEI   74 (164)
T ss_dssp             SCCCCTTSBCCCCEEECT-------------------TSCEEEGGGG-TTSEEEEEECSCSCSSCCCHHHHHHHHHHHTS
T ss_pred             CCcCCCCCCCCCeEEECC-------------------CCCEEeHHHh-CCCeEEEEEecchhcccchHHHHHHHHHHHhh
Confidence            345789999998887665                   5999999995 67799999999999999999999999987766


Q ss_pred             hhcCCeEEEEecCChhhHHhhhcC-CCCCceeE--eccchHHHHHhCCCcccccccccccccCHHHHHHHHHHHhcCCcc
Q 015842          260 DALGIQLFAVLHEYIESEVKDFWP-RYWGGVVV--YDQGMEFFKALGGGKLLKDKFLSGFLLNPRAIANYKRARTLGVEQ  336 (399)
Q Consensus       260 ~alGV~LVaIspE~~e~~ik~F~~-~~l~f~VL--sDp~r~lYkaLGl~r~~r~s~lsgfl~~P~v~~~~~rA~~~G~~g  336 (399)
                        .|+.+|+|+.+++.. .+.|.. +.++|+++  +|+++.+.++||+..       .   .                 +
T Consensus        75 --~~~~vv~Is~d~~~~-~~~~~~~~~~~~~~~~~~d~~~~~~~~ygv~~-------~---~-----------------~  124 (164)
T d1qxha_          75 --DNTVVLCISADLPFA-QSRFCGAEGLNNVITLSTFRNAEFLQAYGVAI-------A---D-----------------G  124 (164)
T ss_dssp             --TTEEEEEEESSCHHH-HTTCCSSTTCTTEEEEECTTCHHHHHHTTCBB-------C---S-----------------S
T ss_pred             --ccceeeeEEcCCHHH-HHHHHHHhCCCcceeeccccchhhHHhcCeEe-------e---c-----------------C
Confidence              489999999998875 778875 66788766  467899999999841       0   0                 0


Q ss_pred             ccCCCCcccceEEEEecCCCcEEEEEecCCCCCCCCHHHHHH
Q 015842          337 NFKGEGEIKGGLFIVGRGRSGIAYQFIERNFGDWAPLAEVIE  378 (399)
Q Consensus       337 n~~GD~~qLGGtFVId~gGg~I~yah~d~d~gDrad~eeVLa  378 (399)
                      ..  .++..|++||||++| +|+|.++..+++++++.+++|+
T Consensus       125 ~~--~g~~~ra~fvID~~G-~I~y~~~~~~~~~~pd~d~~l~  163 (164)
T d1qxha_         125 PL--KGLAARAVVVIDEND-NVIFSQLVDEITTEPDYEAALA  163 (164)
T ss_dssp             TT--TTSBCCEEEEECTTS-BEEEEEECSBTTSCCCHHHHTC
T ss_pred             cc--cCcccCEEEEEcCCC-EEEEEEEcCCCCCCCCHHHhhc
Confidence            00  124458999999996 9999999999999999999875

>d1n8ja_ c.47.1.10 (A:) Alkyl hydroperoxide reductase AhpC {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Alkyl hydroperoxide reductase AhpC
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.84  E-value=4e-21  Score=174.15  Aligned_cols=150  Identities=9%  Similarity=0.028  Sum_probs=124.0

Q ss_pred             CCCCCCCcccccCccccccchhhhcccccccccCCCceechhhccCCCEEEEeecCCCCcchHHHHHHHHhccchhhhcC
Q 015842          184 VNEKVAPYSAIENISIQKLTPEYKIGMERLVKTKTPPMKALELWRESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALG  263 (399)
Q Consensus       184 ~~~~~apl~~L~~i~l~~l~~~~~~g~~~~v~~~G~~VsLsdL~~~~pvVLvFyRg~gCP~Cr~el~~L~e~~pef~alG  263 (399)
                      ..|++||.|.++...                +.+..+|+|+++ +++++||.||++.|||.|..|+.+|++.+++|+++|
T Consensus         2 lIg~~aP~F~~~a~~----------------~g~~~~vsLsd~-kGk~vVL~FyP~~~tp~C~~e~~~f~~~~~~f~~~~   64 (186)
T d1n8ja_           2 LINTKIKPFKNQAFK----------------NGEFIEVTEKDT-EGRWSVFFFYPADFTFVSPTELGDVADHYEELQKLG   64 (186)
T ss_dssp             CTTCBCCCCEEEEEE----------------TTEEEEEEHHHH-TTSEEEEEECSCTTCSHHHHHHHHHHHHHHHHHHTT
T ss_pred             CCCCcCCCCEeeeee----------------CCeeEEEeHHHh-CCCeEEEEEEeccCCCccHHHHHHHHHhhhhccccc
Confidence            468899977776641                112358899996 667999999999999999999999999999999999


Q ss_pred             CeEEEEecCChhhHHhhhcC-----CCCCceeEeccchHHHHHhCCCcccccccccccccCHHHHHHHHHHHhcCCcccc
Q 015842          264 IQLFAVLHEYIESEVKDFWP-----RYWGGVVVYDQGMEFFKALGGGKLLKDKFLSGFLLNPRAIANYKRARTLGVEQNF  338 (399)
Q Consensus       264 V~LVaIspE~~e~~ik~F~~-----~~l~f~VLsDp~r~lYkaLGl~r~~r~s~lsgfl~~P~v~~~~~rA~~~G~~gn~  338 (399)
                      +++++||++++.. .+.|.+     ..++|++++|+++++.++||+..             +                  
T Consensus        65 ~~v~gIS~Ds~~s-h~~f~~~~~~~~~~~fpllsD~~~~v~~~yGv~~-------------~------------------  112 (186)
T d1n8ja_          65 VDVYSVSTDTHFT-HKAWHSSSETIAKIKYAMIGDPTGALTRNFDNMR-------------E------------------  112 (186)
T ss_dssp             EEEEEEESSCHHH-HHHHHHHCTTGGGCCSEEEECTTSHHHHHTTCEE-------------T------------------
T ss_pred             EEEEeccccCHHH-HHHHhccccccccccccccccHHHHHHHHhCCCc-------------c------------------
Confidence            9999999999875 677774     24899999999999999999842             0                  


Q ss_pred             CCCCcccceEEEEecCCCcEEEEEecCCCCCCCCHHHHHHHHHhhhh
Q 015842          339 KGEGEIKGGLFIVGRGRSGIAYQFIERNFGDWAPLAEVIEICTQLQD  385 (399)
Q Consensus       339 ~GD~~qLGGtFVId~gGg~I~yah~d~d~gDrad~eeVLaAl~~l~~  385 (399)
                       ..+...+++||||++| .|+|.+++.. ....+++|+|++++++|-
T Consensus       113 -~~g~~~r~tfiID~~G-~Ir~~~v~~~-~~~r~~~eiL~~lkaLQ~  156 (186)
T d1n8ja_         113 -DEGLADRATFVVDPQG-IIQAIEVTAE-GIGRDASDLLRKIKAAQY  156 (186)
T ss_dssp             -TTTEECEEEEEECTTS-BEEEEEEECT-TBCCCHHHHHHHHHHHHH
T ss_pred             -cCCcceeeEEEECchh-eEEEEeecCC-CcccCHHHHHHHHHHHHH
Confidence             1134568999999996 9999998864 455588999999999984

>d1q98a_ c.47.1.10 (A:) Thiol peroxidase Tpx {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thiol peroxidase Tpx
species: Haemophilus influenzae [TaxId: 727]

Probab=99.83  E-value=1.3e-20  Score=165.87  Aligned_cols=149  Identities=6%  Similarity=0.035  Sum_probs=121.4

Q ss_pred             CCCCCCCCCCCCcccccCccccccchhhhcccccccccCCCceechhhccCCCEEEEeecCCCCcchHHHHHHHHhccch
Q 015842          179 IQAPPVNEKVAPYSAIENISIQKLTPEYKIGMERLVKTKTPPMKALELWRESPAVLLCIRRPGCIMCRAEAHQLYAKKPI  258 (399)
Q Consensus       179 ~~~a~~~~~~apl~~L~~i~l~~l~~~~~~g~~~~v~~~G~~VsLsdL~~~~pvVLvFyRg~gCP~Cr~el~~L~e~~pe  258 (399)
                      ....+++|+.||.|.|++.                   +|++++|+++ +++++||.||+..|||.|..|+++|++.+++
T Consensus        12 ~g~~p~vG~~APdF~L~d~-------------------~g~~v~Lsd~-~Gk~vVL~f~p~~~tp~C~~e~~~~~~~~~~   71 (164)
T d1q98a_          12 GGHFPQVGEIVENFILVGN-------------------DLADVALNDF-ASKRKVLNIFPSIDTGVCATSVRKFNQQAAK   71 (164)
T ss_dssp             ESCCCCTTCBCCCCEEECT-------------------TSCEEEGGGG-TTSEEEEEECSCSCSSCCCHHHHHHHHHHHH
T ss_pred             CCCCCCCCCCCCCcEEECC-------------------CCCEEeehhh-CCcEEEEEecCccccCcccHHHHHHHHHHHH
Confidence            4567899999998877655                   5999999995 7789999999999999999999999999999


Q ss_pred             hhhcCCeEEEEecCChhhHHhhhcC-CCCCc-eeEec-cchHHHHHhCCCcccccccccccccCHHHHHHHHHHHhcCCc
Q 015842          259 FDALGIQLFAVLHEYIESEVKDFWP-RYWGG-VVVYD-QGMEFFKALGGGKLLKDKFLSGFLLNPRAIANYKRARTLGVE  335 (399)
Q Consensus       259 f~alGV~LVaIspE~~e~~ik~F~~-~~l~f-~VLsD-p~r~lYkaLGl~r~~r~s~lsgfl~~P~v~~~~~rA~~~G~~  335 (399)
                      |+  |+.+++||.+++.. .+.|.. +.+.+ .+++| .++.+.++||+..    .      .             .++ 
T Consensus        72 ~~--~~~vi~iS~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~----~------~-------------~~~-  124 (164)
T d1q98a_          72 LS--NTIVLCISADLPFA-QARFCGAEGIENAKTVSTFRNHALHSQLGVDI----Q------T-------------GPL-  124 (164)
T ss_dssp             ST--TEEEEEEESSCHHH-HTTCTTTTTCTTEEEEECTTCTHHHHHTTCEE----C------S-------------STT-
T ss_pred             hc--cceEEeecCCcHHH-HHHHHHHhCCccccccccccchhHHHhhceec----c------c-------------Ccc-
Confidence            95  89999999999975 788875 56654 34444 4678889888841    0      0             000 


Q ss_pred             cccCCCCcccceEEEEecCCCcEEEEEecCCCCCCCCHHHHHHHH
Q 015842          336 QNFKGEGEIKGGLFIVGRGRSGIAYQFIERNFGDWAPLAEVIEIC  380 (399)
Q Consensus       336 gn~~GD~~qLGGtFVId~gGg~I~yah~d~d~gDrad~eeVLaAl  380 (399)
                           .++..+++||||++| +|+|.++..+++++++.+++|++|
T Consensus       125 -----~g~~~Ra~fvID~~G-~I~y~~~~~~~~~epd~~~~l~~L  163 (164)
T d1q98a_         125 -----AGLTSRAVIVLDEQN-NVLHSQLVEEIKEEPNYEAALAVL  163 (164)
T ss_dssp             -----TTSBCCEEEEECTTS-BEEEEEECSBTTSCCCHHHHHHTT
T ss_pred             -----ccCcccEEEEECCCC-EEEEEEECCCCCCCCCHHHHHHhh
Confidence                 124458999999996 999999999999999999999875

>d1xvqa_ c.47.1.10 (A:) Thiol peroxidase Tpx {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thiol peroxidase Tpx
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.83  E-value=3.8e-20  Score=162.80  Aligned_cols=151  Identities=12%  Similarity=0.087  Sum_probs=119.0

Q ss_pred             CCCCCCCCCCCCcccccCccccccchhhhcccccccccCCCceechhhccCCCEEEEeecCCCCcchHHHHHHHHhccch
Q 015842          179 IQAPPVNEKVAPYSAIENISIQKLTPEYKIGMERLVKTKTPPMKALELWRESPAVLLCIRRPGCIMCRAEAHQLYAKKPI  258 (399)
Q Consensus       179 ~~~a~~~~~~apl~~L~~i~l~~l~~~~~~g~~~~v~~~G~~VsLsdL~~~~pvVLvFyRg~gCP~Cr~el~~L~e~~pe  258 (399)
                      +...|++|+.||.|+|++.                   +|++|+|+++ +++++||.||+..|||.|+.++..|++   +
T Consensus        13 ~g~~p~iG~~aP~F~L~~~-------------------~g~~v~L~d~-~Gk~vvl~f~~~~~~p~C~~e~~~l~~---~   69 (166)
T d1xvqa_          13 VGELPAVGSPAPAFTLTGG-------------------DLGVISSDQF-RGKSVLLNIFPSVDTPVCATSVRTFDE---R   69 (166)
T ss_dssp             SSCCCCTTSBCCCCEEECT-------------------TSCEEEGGGG-TTSCEEEEECSCCCSSCCCHHHHHHHH---H
T ss_pred             CCCCCCCcCCCCCeEEECC-------------------CCCEEehHHh-CCcEEEEEeeecccccccHHHHHHHhh---h
Confidence            3456799999998888766                   5999999996 778999999999999999999998865   5


Q ss_pred             hhhcCCeEEEEecCChhhHHhhhcC-CCCCcee-EeccchHHHHHhCCCcccccccccccccCHHHHHHHHHHHhcCCcc
Q 015842          259 FDALGIQLFAVLHEYIESEVKDFWP-RYWGGVV-VYDQGMEFFKALGGGKLLKDKFLSGFLLNPRAIANYKRARTLGVEQ  336 (399)
Q Consensus       259 f~alGV~LVaIspE~~e~~ik~F~~-~~l~f~V-LsDp~r~lYkaLGl~r~~r~s~lsgfl~~P~v~~~~~rA~~~G~~g  336 (399)
                      +++.|+++++|+.+++.. .++|.. ..+++.+ +.|....+.+.+|+...          .                 +
T Consensus        70 ~~~~g~~vv~Is~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~----------~-----------------~  121 (166)
T d1xvqa_          70 AAASGATVLCVSKDLPFA-QKRFCGAEGTENVMPASAFRDSFGEDYGVTIA----------D-----------------G  121 (166)
T ss_dssp             HHHTTCEEEEEESSCHHH-HTTCC------CEEEEECTTSSHHHHTTCBBC----------S-----------------S
T ss_pred             cccccccccccccchHHH-HHHHHHHhCCcccccccchhHHHHHHhCeeec----------c-----------------C
Confidence            678899999999988865 677775 5667775 55667788888887410          0                 0


Q ss_pred             ccCCCCcccceEEEEecCCCcEEEEEecCCCCCCCCHHHHHHHHHhh
Q 015842          337 NFKGEGEIKGGLFIVGRGRSGIAYQFIERNFGDWAPLAEVIEICTQL  383 (399)
Q Consensus       337 n~~GD~~qLGGtFVId~gGg~I~yah~d~d~gDrad~eeVLaAl~~l  383 (399)
                      .  ..++..+++||||++| +|+|.++..+..++++.++||++|++.
T Consensus       122 ~--~~g~~~ra~fvID~~G-~I~y~~~~~~~~~~~~~d~il~aL~a~  165 (166)
T d1xvqa_         122 P--MAGLLARAIVVIGADG-NVAYTELVPEIAQEPNYEAALAALGAT  165 (166)
T ss_dssp             T--TTTSBCSEEEEECTTS-BEEEEEECSBTTCCCCHHHHHHHHHHT
T ss_pred             c--ccCceeeEEEEEeCCC-EEEEEEEcCCCCCCCCHHHHHHHHHhc
Confidence            0  0123468999999996 999999999999999999999999874

>d1st9a_ c.47.1.10 (A:) Thiol-disulfide oxidoreductase ResA {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thiol-disulfide oxidoreductase ResA
species: Bacillus subtilis [TaxId: 1423]

Probab=99.69  E-value=1e-16  Score=134.77  Aligned_cols=133  Identities=14%  Similarity=0.132  Sum_probs=106.2

Q ss_pred             CCCCCcccccCccccccchhhhcccccccccCCCceechhhccCCCEEEEeecCCCCcchHHHHHHHHhccchhhhcCCe
Q 015842          186 EKVAPYSAIENISIQKLTPEYKIGMERLVKTKTPPMKALELWRESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQ  265 (399)
Q Consensus       186 ~~~apl~~L~~i~l~~l~~~~~~g~~~~v~~~G~~VsLsdL~~~~pvVLvFyRg~gCP~Cr~el~~L~e~~pef~alGV~  265 (399)
                      |+++|.|.|.+.                   +|++++++++ +++++||.|+ ..|||.|..++..|+++..++...|+.
T Consensus         2 G~~~P~f~l~~~-------------------~G~~~~l~~~-~gk~~li~f~-~~~C~~C~~~~~~l~~~~~~~~~~~~~   60 (137)
T d1st9a_           2 GSDAPNFVLEDT-------------------NGKRIELSDL-KGKGVFLNFW-GTWCEPCKKEFPYMANQYKHFKSQGVE   60 (137)
T ss_dssp             CEECCCCEEECT-------------------TSCEEEGGGG-TTSEEEEEEE-CTTCHHHHHHHHHHHHHHHHHGGGTEE
T ss_pred             cCcCCCeEEECC-------------------CcCEEeHHHh-CCCEEEEEEe-eccccceeecccccccccccccccccc
Confidence            788997777666                   5999999996 6667777776 789999999999999999999999999


Q ss_pred             EEEEecCChhhHHhhhcC-CCCCceeEeccchHHHHHhCCCcccccccccccccCHHHHHHHHHHHhcCCccccCCCCcc
Q 015842          266 LFAVLHEYIESEVKDFWP-RYWGGVVVYDQGMEFFKALGGGKLLKDKFLSGFLLNPRAIANYKRARTLGVEQNFKGEGEI  344 (399)
Q Consensus       266 LVaIspE~~e~~ik~F~~-~~l~f~VLsDp~r~lYkaLGl~r~~r~s~lsgfl~~P~v~~~~~rA~~~G~~gn~~GD~~q  344 (399)
                      +|+|+.+.....++.|.+ ..++|+++.|++..+.+.||+.                                      .
T Consensus        61 ~v~i~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~--------------------------------------~  102 (137)
T d1st9a_          61 IVAVNVGESKIAVHNFMKSYGVNFPVVLDTDRQVLDAYDVS--------------------------------------P  102 (137)
T ss_dssp             EEEEEESCCHHHHHHHHHHTTCCSCEEEETTSHHHHHTTCC--------------------------------------S
T ss_pred             cccccccchhhhHHHHHHHcCCCccccccccchhhhhhhcc--------------------------------------c
Confidence            999997543334788775 6789999999999999988773                                      1


Q ss_pred             cceEEEEecCCCcEEEEEecCCCCCCCCHHHHHHHH
Q 015842          345 KGGLFIVGRGRSGIAYQFIERNFGDWAPLAEVIEIC  380 (399)
Q Consensus       345 LGGtFVId~gGg~I~yah~d~d~gDrad~eeVLaAl  380 (399)
                      .|.+||||++| +|+|.|.+.-  +...++++|+.+
T Consensus       103 ~P~~~liD~~G-~i~~~~~G~~--~~~~~~~~l~~l  135 (137)
T d1st9a_         103 LPTTFLINPEG-KVVKVVTGTM--TESMIHDYMNLI  135 (137)
T ss_dssp             SCEEEEECTTS-EEEEEEESCC--CHHHHHHHHHHH
T ss_pred             cceEEEECCCC-EEEEEEECCC--CHHHHHHHHHhh
Confidence            47899999996 8999988753  223344444443

>d1lu4a_ c.47.1.10 (A:) Soluble secreted antigen MPT53 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Soluble secreted antigen MPT53
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.69  E-value=1.2e-16  Score=134.45  Aligned_cols=121  Identities=14%  Similarity=0.109  Sum_probs=98.6

Q ss_pred             CCCceechhhccCCCEEEEeecCCCCcchHHHHHHHHhccchhhhcCCeEEEEecCChhhHHhhhcC-CCCCceeEeccc
Q 015842          217 KTPPMKALELWRESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLHEYIESEVKDFWP-RYWGGVVVYDQG  295 (399)
Q Consensus       217 ~G~~VsLsdL~~~~pvVLvFyRg~gCP~Cr~el~~L~e~~pef~alGV~LVaIspE~~e~~ik~F~~-~~l~f~VLsDp~  295 (399)
                      +|++++++++ +++|+||.|+ ..|||.|+.++..|.+.+.+.  .|+.+|+|+.......++.|.+ +.++|+++.|++
T Consensus        13 ~G~~~~l~~~-~Gk~vll~F~-a~wC~~C~~~~p~l~~~~~~~--~~v~~v~v~~~~~~~~~~~~~~~~~~~~p~~~d~~   88 (134)
T d1lu4a_          13 SGAPFDGASL-QGKPAVLWFW-TPWCPFCNAEAPSLSQVAAAN--PAVTFVGIATRADVGAMQSFVSKYNLNFTNLNDAD   88 (134)
T ss_dssp             TSCEEEGGGG-TTSCEEEEEE-CTTCHHHHHHHHHHHHHHHHC--TTSEEEEEECSSCHHHHHHHHHHHTCCSEEEECTT
T ss_pred             CCCEEcHHHh-CCCEEEEEEe-ecccCCceecchhHHHHhhhh--ccccccccccccchhhhhhhhhhhccccceeeCch
Confidence            5999999997 6678887777 899999999999999887755  4899999987544445788885 778999999999


Q ss_pred             hHHHHHhCCCcccccccccccccCHHHHHHHHHHHhcCCccccCCCCcccceEEEEecCCCcEEEEEecCCCCCCCCHHH
Q 015842          296 MEFFKALGGGKLLKDKFLSGFLLNPRAIANYKRARTLGVEQNFKGEGEIKGGLFIVGRGRSGIAYQFIERNFGDWAPLAE  375 (399)
Q Consensus       296 r~lYkaLGl~r~~r~s~lsgfl~~P~v~~~~~rA~~~G~~gn~~GD~~qLGGtFVId~gGg~I~yah~d~d~gDrad~ee  375 (399)
                      ..++++||+.                                      .+|.+||||++| .|+|.+.   .....+.++
T Consensus        89 ~~~~~~~~v~--------------------------------------~~P~~~lid~~G-~i~~v~~---~~g~~~~~~  126 (134)
T d1lu4a_          89 GVIWARYNVP--------------------------------------WQPAFVFYRADG-TSTFVNN---PTAAMSQDE  126 (134)
T ss_dssp             SHHHHHTTCC--------------------------------------SSSEEEEECTTS-CEEEECC---SSSCCCHHH
T ss_pred             HHHHHHcCCC--------------------------------------cCCEEEEEeCCC-eEEEEec---cCCCCCHHH
Confidence            9999998874                                      147899999997 8887643   334667899


Q ss_pred             HHHHHHhh
Q 015842          376 VIEICTQL  383 (399)
Q Consensus       376 VLaAl~~l  383 (399)
                      |.+++.+|
T Consensus       127 l~~~l~~L  134 (134)
T d1lu4a_         127 LSGRVAAL  134 (134)
T ss_dssp             HHHHHHHC
T ss_pred             HHHHHHcC
Confidence            99888764

>d1hd2a_ c.47.1.10 (A:) Peroxiredoxin 5 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Peroxiredoxin 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.68  E-value=1.5e-16  Score=139.06  Aligned_cols=153  Identities=11%  Similarity=-0.029  Sum_probs=111.2

Q ss_pred             CCCCCCCCCcccccCccccccchhhhcccccccccCCCceechhhccCCCEEEEeecCCCCcchH-HHHHHHHhccchhh
Q 015842          182 PPVNEKVAPYSAIENISIQKLTPEYKIGMERLVKTKTPPMKALELWRESPAVLLCIRRPGCIMCR-AEAHQLYAKKPIFD  260 (399)
Q Consensus       182 a~~~~~~apl~~L~~i~l~~l~~~~~~g~~~~v~~~G~~VsLsdL~~~~pvVLvFyRg~gCP~Cr-~el~~L~e~~pef~  260 (399)
                      +.++|+++|.|.|++.     .             .|+.|+++++++++++||+||++.|||.|. ++++.+.+.++.|.
T Consensus         2 pikVGd~aP~f~l~~~-----~-------------~~~~v~l~d~~~gk~vvL~fyP~afTp~Ct~~~~~~~~~~~~~~~   63 (161)
T d1hd2a_           2 PIKVGDAIPAVEVFEG-----E-------------PGNKVNLAELFKGKKGVLFGVPGAFTPGCSKTHLPGFVEQAEALK   63 (161)
T ss_dssp             CCCTTCBCCCCEEECS-----S-------------TTCEEEHHHHTTTSEEEEEEESCTTCHHHHHTHHHHHHHTHHHHH
T ss_pred             CCCCCCcCCCeEEEec-----C-------------CCcEEEhHHHhCCCeEEEEEEeccccccchhhhhhHHHhhhHHHH
Confidence            4689999997776533     1             388999999999999999999999999995 58888999999999


Q ss_pred             hcCCeEEE-EecCChhhHHhhhcC---CCCCceeEeccchHHHHHhCCCcccccccccccccCHHHHHHHHHHHhcCCcc
Q 015842          261 ALGIQLFA-VLHEYIESEVKDFWP---RYWGGVVVYDQGMEFFKALGGGKLLKDKFLSGFLLNPRAIANYKRARTLGVEQ  336 (399)
Q Consensus       261 alGV~LVa-IspE~~e~~ik~F~~---~~l~f~VLsDp~r~lYkaLGl~r~~r~s~lsgfl~~P~v~~~~~rA~~~G~~g  336 (399)
                      ++|+.+|+ |+-.++.. .+.|..   ..+++++++|++.++.++||+...          . +. . ..    ..|   
T Consensus        64 ~~g~~~i~~~s~~~~~~-~~~~~~~~~~~~~~~llsD~~~~~a~~~g~~~~----------~-~~-~-g~----~~~---  122 (161)
T d1hd2a_          64 AKGVQVVACLSVNDAFV-TGEWGRAHKAEGKVRLLADPTGAFGKETDLLLD----------D-SL-V-SI----FGN---  122 (161)
T ss_dssp             TTTCCEEEEEESSCHHH-HHHHHHHTTCTTTCEEEECTTCHHHHHHTCBCC----------S-TT-H-HH----HSS---
T ss_pred             HcCCeEEEEEecCchhh-hhhhhhhcccccccccccCCcceeeeeeeeeec----------c-cc-C-cc----ccc---
Confidence            99997654 66555543 555553   346789999999999999998520          0 00 0 00    000   


Q ss_pred             ccCCCCcccceEEEEecCCCcEEEEEecCCCCCC--CCHHHHHHHH
Q 015842          337 NFKGEGEIKGGLFIVGRGRSGIAYQFIERNFGDW--APLAEVIEIC  380 (399)
Q Consensus       337 n~~GD~~qLGGtFVId~gGg~I~yah~d~d~gDr--ad~eeVLaAl  380 (399)
                            ......|+|+.+| +|.|.+++.+...+  .+.++||++|
T Consensus       123 ------~~s~r~~~I~~~G-~I~~~~ve~~~~~~~~s~a~~vL~~L  161 (161)
T d1hd2a_         123 ------RRLKRFSMVVQDG-IVKALNVEPDGTGLTCSLAPNIISQL  161 (161)
T ss_dssp             ------CCBCCEEEEEETT-EEEEEEECTTSSCSSTTSHHHHHHHC
T ss_pred             ------cEEeEEEEEECCC-EEEEEEEeCCCCCCCcCcHHHHHhcC
Confidence                  1122456666685 99999998776544  4678888764

>d2cvba1 c.47.1.10 (A:2-188) Probable thiol-disulfide isomerase/thioredoxin TTHA0593 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Probable thiol-disulfide isomerase/thioredoxin TTHA0593
species: Thermus thermophilus [TaxId: 274]

Probab=99.57  E-value=6.2e-15  Score=132.03  Aligned_cols=146  Identities=11%  Similarity=0.038  Sum_probs=111.5

Q ss_pred             CCCCCCCCCCCcccccCccccccchhhhcccccccccCCCceechhhccCCCEEEEeecCCCCcchHHHHHHHHhccchh
Q 015842          180 QAPPVNEKVAPYSAIENISIQKLTPEYKIGMERLVKTKTPPMKALELWRESPAVLLCIRRPGCIMCRAEAHQLYAKKPIF  259 (399)
Q Consensus       180 ~~a~~~~~~apl~~L~~i~l~~l~~~~~~g~~~~v~~~G~~VsLsdL~~~~pvVLvFyRg~gCP~Cr~el~~L~e~~pef  259 (399)
                      .+.+.+|+.||.|.|+++                   +|+.++|+++ +++++||.| -..|||+|+.++-.|.++..++
T Consensus         3 ~p~l~vG~~aPdF~l~d~-------------------~G~~~~Lsd~-kGk~vvl~F-watwCp~C~~~~p~l~~l~~~y   61 (187)
T d2cvba1           3 YPELPLESPLIDAELPDP-------------------RGGRYRLSQF-HEPLLAVVF-MCNHCPYVKGSIGELVALAERY   61 (187)
T ss_dssp             SCCCCTTCBCCCCEEECT-------------------TSCEEEGGGC-CSSEEEEEE-ECSSCHHHHTTHHHHHHHHHHT
T ss_pred             CCCCCCCCccCccEeecC-------------------CCCEEEHHHh-CCCeEEEEE-eCCCCccchhhhhhhhhhhhhc
Confidence            456788999998877777                   5999999996 666665555 5889999999999999999988


Q ss_pred             hhcCCeEEEEecC--------ChhhHHhhhcC-CCCCceeEeccchHHHHHhCCCcccccccccccccCHHHHHHHHHHH
Q 015842          260 DALGIQLFAVLHE--------YIESEVKDFWP-RYWGGVVVYDQGMEFFKALGGGKLLKDKFLSGFLLNPRAIANYKRAR  330 (399)
Q Consensus       260 ~alGV~LVaIspE--------~~e~~ik~F~~-~~l~f~VLsDp~r~lYkaLGl~r~~r~s~lsgfl~~P~v~~~~~rA~  330 (399)
                      +. ++.+|+|...        +.+ .++.|.+ +.++|+++.|++..++++||+..                        
T Consensus        62 ~~-~v~~v~i~snd~~~~~~~~~e-~~~~~~~~~~~~~p~l~D~~~~~~~~~~v~~------------------------  115 (187)
T d2cvba1          62 RG-KVAFVGINANDYEKYPEDAPE-KMAAFAEEHGIFFPYLLDETQEVAKAYRALR------------------------  115 (187)
T ss_dssp             TT-TEEEEEEECCCTTTCGGGSHH-HHHHHHHHHTCCSCEEECSSSHHHHHTTCCE------------------------
T ss_pred             cc-cceeeeeeccccccccccchH-HHHHHHHHhCCcceeeechhhhhcccccccc------------------------
Confidence            76 6888888632        222 3566664 67899999999999999998851                        


Q ss_pred             hcCCccccCCCCcccceEEEEecCCCcEEEEEecCC-CCC--CCCHHHHHHHHHhhhhhh
Q 015842          331 TLGVEQNFKGEGEIKGGLFIVGRGRSGIAYQFIERN-FGD--WAPLAEVIEICTQLQDQQ  387 (399)
Q Consensus       331 ~~G~~gn~~GD~~qLGGtFVId~gGg~I~yah~d~d-~gD--rad~eeVLaAl~~l~~~~  387 (399)
                                    +|.+||||++| +|+|.-+-.+ +++  .+.-.+|.+|++++-+.+
T Consensus       116 --------------~P~~~liD~~G-~i~y~G~idd~~~~~~~~~~~~L~~Ai~~ll~g~  160 (187)
T d2cvba1         116 --------------TPEVFLFDERR-LLRYHGRVNDNPKDPSKVQSHDLEAAIEALLRGE  160 (187)
T ss_dssp             --------------ESEEEEECTTC-BEEEEECSSSCTTCGGGCCCCHHHHHHHHHHTTC
T ss_pred             --------------eeeEEEEcCCC-eEEEEeeecCCCCCCCCCCHHHHHHHHHHHHcCC
Confidence                          47899999996 8999754322 322  344457888888876555

>d1jfua_ c.47.1.10 (A:) Membrane-anchored thioredoxin-like protein TlpA, soluble domain {Bradyrhizobium japonicum [TaxId: 375]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Membrane-anchored thioredoxin-like protein TlpA, soluble domain
species: Bradyrhizobium japonicum [TaxId: 375]

Probab=99.56  E-value=8.5e-15  Score=128.16  Aligned_cols=126  Identities=13%  Similarity=0.073  Sum_probs=96.7

Q ss_pred             CCCceechhhccCCCEEEEeecCCCCcchHHHHHHHHhccchhhhcCCeEEEEecC--ChhhHHhhhcC-CCCCc-eeEe
Q 015842          217 KTPPMKALELWRESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLHE--YIESEVKDFWP-RYWGG-VVVY  292 (399)
Q Consensus       217 ~G~~VsLsdL~~~~pvVLvFyRg~gCP~Cr~el~~L~e~~pef~alGV~LVaIspE--~~e~~ik~F~~-~~l~f-~VLs  292 (399)
                      +|+.|+|+++ +++++||.|+ ..|||.|..+...|.+++.++...+..+|+|+.+  .++. ++.|.+ ..+++ .++.
T Consensus        45 ~G~~v~L~~~-kGK~vll~F~-a~wC~~C~~~~~~l~~~~~~~~~~~~~vv~vs~d~~~~~~-~~~~~~~~~~~~~~~~~  121 (176)
T d1jfua_          45 DGKPKKLSDF-RGKTLLVNLW-ATWCVPCRKEMPALDELQGKLSGPNFEVVAINIDTRDPEK-PKTFLKEANLTRLGYFN  121 (176)
T ss_dssp             TSCEEEGGGG-TTSEEEEEEE-CTTCHHHHHHHHHHHHHHHHHCBTTEEEEEEECCCSCTTH-HHHHHHHTTCCTTCCEE
T ss_pred             CcCEEeHHHh-CCCEEEEEec-cCcccchHHHHHhhhhccccccccccccccccccccchhh-hhhhHhhhCCcceeeee
Confidence            5999999996 6667777776 8899999999999999999999999999999854  4443 677774 55665 4899


Q ss_pred             ccchHHHHHhCCCcccccccccccccCHHHHHHHHHHHhcCCccccCCCCcccceEEEEecCCCcEEEEEecCCCCCCCC
Q 015842          293 DQGMEFFKALGGGKLLKDKFLSGFLLNPRAIANYKRARTLGVEQNFKGEGEIKGGLFIVGRGRSGIAYQFIERNFGDWAP  372 (399)
Q Consensus       293 Dp~r~lYkaLGl~r~~r~s~lsgfl~~P~v~~~~~rA~~~G~~gn~~GD~~qLGGtFVId~gGg~I~yah~d~d~gDrad  372 (399)
                      |++..+++.|+...                                  ...-.|.+||||++| +|++.|.+..-.   +
T Consensus       122 d~~~~~~~~~~~~~----------------------------------~v~~~P~~~lID~~G-~I~~~~~G~~~~---~  163 (176)
T d1jfua_         122 DQKAKVFQDLKAIG----------------------------------RALGMPTSVLVDPQG-CEIATIAGPAEW---A  163 (176)
T ss_dssp             CTTCHHHHHHHTTT----------------------------------CCSSSSEEEEECTTS-BEEEEEESCCCT---T
T ss_pred             cchhHHHHHHhhhc----------------------------------cCCCCCeEEEEcCCC-EEEEEEECCCCC---C
Confidence            99998888765420                                  001247899999996 899999875322   2


Q ss_pred             HHHHHHHHHhh
Q 015842          373 LAEVIEICTQL  383 (399)
Q Consensus       373 ~eeVLaAl~~l  383 (399)
                      .+++++.++++
T Consensus       164 ~~e~~~~l~al  174 (176)
T d1jfua_         164 SEDALKLIRAA  174 (176)
T ss_dssp             SHHHHHHHHHH
T ss_pred             hHHHHHHHHHh
Confidence            37788877765

>d1tp9a1 c.47.1.10 (A:1-162) Plant peroxiredoxin {Western balsam poplar(Populus trichocarpa) [TaxId: 3694]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Plant peroxiredoxin
species: Western balsam poplar(Populus trichocarpa) [TaxId: 3694]

Probab=99.52  E-value=2.8e-14  Score=124.48  Aligned_cols=154  Identities=11%  Similarity=0.053  Sum_probs=111.4

Q ss_pred             CCCCCCCCCcccccCccccccchhhhcccccccccCCCceechhhccCCCEEEEeecCCCCcchHHHHHH-HHhccchhh
Q 015842          182 PPVNEKVAPYSAIENISIQKLTPEYKIGMERLVKTKTPPMKALELWRESPAVLLCIRRPGCIMCRAEAHQ-LYAKKPIFD  260 (399)
Q Consensus       182 a~~~~~~apl~~L~~i~l~~l~~~~~~g~~~~v~~~G~~VsLsdL~~~~pvVLvFyRg~gCP~Cr~el~~-L~e~~pef~  260 (399)
                      +.++|+++|.|.|...     .+          +..+++++++++++++++||+||.+.++|.|..+... .....+++.
T Consensus         3 ~l~vGd~~Pdf~l~~~-----~~----------~~~~~~~~l~d~~~gk~vVl~f~P~afT~~Ct~e~~~~~~~~~d~~~   67 (162)
T d1tp9a1           3 PIAVGDVLPDGKLAYF-----DE----------QDQLQEVSVHSLVAGKKVILFGVPGAFTPTCSLKHVPGFIEKAGELK   67 (162)
T ss_dssp             CCCTTCBCCCCEEEEE-----CT----------TSCEEEEESHHHHTTSEEEEEEESCTTCHHHHHTHHHHHHHHHHHHH
T ss_pred             CCCCCCCCCCeEEEee-----cC----------CCCceEEEHHHHhCCCeEEEEEEecccchhhhhhcchHHHHhhhHHH
Confidence            4689999996665422     21          1236789999999999999999999999999765554 455677788


Q ss_pred             hcCC-eEEEEecCChhhHHhhhcC-C--CCCceeEeccchHHHHHhCCCcccccccccccccCHHHHHHHHHHHhcCCcc
Q 015842          261 ALGI-QLFAVLHEYIESEVKDFWP-R--YWGGVVVYDQGMEFFKALGGGKLLKDKFLSGFLLNPRAIANYKRARTLGVEQ  336 (399)
Q Consensus       261 alGV-~LVaIspE~~e~~ik~F~~-~--~l~f~VLsDp~r~lYkaLGl~r~~r~s~lsgfl~~P~v~~~~~rA~~~G~~g  336 (399)
                      +.|+ .+++||..++.. .+.|.. .  ..++++++|++..+.++||+...   .  .+                .|+. 
T Consensus        68 ~~g~~~v~~isvd~~~~-~~~~~~~~~~~~~~~~lsD~~~~~~~~~g~~~~---~--~~----------------~g~g-  124 (162)
T d1tp9a1          68 SKGVTEILCISVNDPFV-MKAWAKSYPENKHVKFLADGSATYTHALGLELD---L--QE----------------KGLG-  124 (162)
T ss_dssp             HTTCCCEEEEESSCHHH-HHHHHHTCTTCSSEEEEECTTSHHHHHTTCEEE---E--TT----------------TTSE-
T ss_pred             HcCCcceeeeeccchhh-hhhhhhhcccccccccccchhhHHHhhhhhccc---c--cc----------------ccCC-
Confidence            8875 788999888764 566663 2  36799999999999999998520   0  00                0110 


Q ss_pred             ccCCCCcccceEEEEecCCCcEEEEEecCCC-CCCCCHHHHHHHH
Q 015842          337 NFKGEGEIKGGLFIVGRGRSGIAYQFIERNF-GDWAPLAEVIEIC  380 (399)
Q Consensus       337 n~~GD~~qLGGtFVId~gGg~I~yah~d~d~-gDrad~eeVLaAl  380 (399)
                           .....++|||| +| +|.|.+++..- .++...++||+.|
T Consensus       125 -----~~~~R~tfiId-dg-~I~~~~ve~~~~~~~s~ae~vLk~L  162 (162)
T d1tp9a1         125 -----TRSRRFALLVD-DL-KVKAANIEGGGEFTVSSAEDILKDL  162 (162)
T ss_dssp             -----EEECCEEEEEE-TT-EEEEEEECSSSCCSSCSHHHHHTTC
T ss_pred             -----cEEEEEEEEEE-CC-EEEEEEEECCCCCccCCHHHHHhcC
Confidence                 12346899999 75 89999997642 3456688888653

>d2fy6a1 c.47.1.10 (A:33-175) Peptide methionine sulfoxide reductase MsrA/MsrB, N-terminal domain {Neisseria meningitidis serogroup A [TaxId: 65699]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Peptide methionine sulfoxide reductase MsrA/MsrB, N-terminal domain
species: Neisseria meningitidis serogroup A [TaxId: 65699]

Probab=99.51  E-value=2.7e-14  Score=120.05  Aligned_cols=123  Identities=13%  Similarity=0.144  Sum_probs=99.4

Q ss_pred             CCCceechhhccCCCEEEEeecCCCCcchHHHHHHHHhccchhhhcCCeEEEEecCCh-----hhHHhh-hcC-CCCCce
Q 015842          217 KTPPMKALELWRESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLHEYI-----ESEVKD-FWP-RYWGGV  289 (399)
Q Consensus       217 ~G~~VsLsdL~~~~pvVLvFyRg~gCP~Cr~el~~L~e~~pef~alGV~LVaIspE~~-----e~~ik~-F~~-~~l~f~  289 (399)
                      +|+++++.++ +++|+||.|+ ..|||.|+.++.+|.+.+.+++..++.+++|+....     ...... +.. ++..|+
T Consensus        12 ~~~~~~l~~~-~gk~vvl~F~-a~wC~~C~~~~~~l~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~   89 (143)
T d2fy6a1          12 DNRPASVYLK-KDKPTLIKFW-ASWCPLCLSELGQTEKWAQDAKFSSANLITVASPGFLHEKKDGDFQKWYAGLNYPKLP   89 (143)
T ss_dssp             TSCBGGGGCC-TTSCEEEEEE-CTTCHHHHTTHHHHHHHHHCGGGTTSEEEEEECTTSTTCCCTTHHHHHHTTSCCTTSC
T ss_pred             CCCEeeHHHh-CCCEEEEEEE-CCCCccccccCcchhhhhhhhccCCcEEEEEeeeecccccchhhhhhhhhhcCCcccc
Confidence            6999999985 7789998887 889999999999999999999999999999984322     112233 333 556799


Q ss_pred             eEeccchHHHHHhCCCcccccccccccccCHHHHHHHHHHHhcCCccccCCCCcccceEEEEecCCCcEEEEEecCCCCC
Q 015842          290 VVYDQGMEFFKALGGGKLLKDKFLSGFLLNPRAIANYKRARTLGVEQNFKGEGEIKGGLFIVGRGRSGIAYQFIERNFGD  369 (399)
Q Consensus       290 VLsDp~r~lYkaLGl~r~~r~s~lsgfl~~P~v~~~~~rA~~~G~~gn~~GD~~qLGGtFVId~gGg~I~yah~d~d~gD  369 (399)
                      ++.|++..+.++||+.                                      -.|.+||||++| +|++.+.+.    
T Consensus        90 ~~~D~~~~~~~~~~v~--------------------------------------~~P~~~liD~~G-~i~~~~~G~----  126 (143)
T d2fy6a1          90 VVTDNGGTIAQSLNIS--------------------------------------VYPSWALIGKDG-DVQRIVKGS----  126 (143)
T ss_dssp             EEECTTCHHHHHTTCC--------------------------------------SSSEEEEECTTS-CEEEEEESC----
T ss_pred             cccccchHHHHHcCCC--------------------------------------ccCEEEEECCCC-EEEEEEECC----
Confidence            9999999999988874                                      147899999997 899998765    


Q ss_pred             CCCHHHHHHHHHhhhh
Q 015842          370 WAPLAEVIEICTQLQD  385 (399)
Q Consensus       370 rad~eeVLaAl~~l~~  385 (399)
                       .+.+++.+.++.+..
T Consensus       127 -~~~~~~~~~l~~~~a  141 (143)
T d2fy6a1         127 -INEAQALALIRDPNA  141 (143)
T ss_dssp             -CCHHHHHHHHHCTTS
T ss_pred             -CCHHHHHHHHHHHhc
Confidence             467888888887654

>d2b5xa1 c.47.1.10 (A:1-143) thiol:disulfide oxidoreductase YkuV {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: thiol:disulfide oxidoreductase YkuV
species: Bacillus subtilis [TaxId: 1423]

Probab=99.49  E-value=1.5e-13  Score=116.25  Aligned_cols=135  Identities=9%  Similarity=0.086  Sum_probs=100.5

Q ss_pred             CCCCCCCcccccCccccccchhhhcccccccccCCCceechhhccCCCEEEEeecCCCCcchHHHHHHHHhccchhhhcC
Q 015842          184 VNEKVAPYSAIENISIQKLTPEYKIGMERLVKTKTPPMKALELWRESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALG  263 (399)
Q Consensus       184 ~~~~~apl~~L~~i~l~~l~~~~~~g~~~~v~~~G~~VsLsdL~~~~pvVLvFyRg~gCP~Cr~el~~L~e~~pef~alG  263 (399)
                      +.|+.+|.+.+.+-.+                 +|+.++++. .+++++||.|+ ..|||.|..++..|.+.+.++.+ +
T Consensus         2 k~g~~aP~~~~~~~~~-----------------ng~~~~~~~-~~~k~vvl~f~-a~~C~~C~~~~p~l~~l~~~~~~-~   61 (143)
T d2b5xa1           2 KLRQPMPELTGEKAWL-----------------NGEVTREQL-IGEKPTLIHFW-SISCHLCKEAMPQVNEFRDKYQD-Q   61 (143)
T ss_dssp             CTTCBCCCCCCCSEEE-----------------SCCCCHHHH-TTTSCEEEEEE-CTTCHHHHHHHHHHHHHHHHHTT-T
T ss_pred             CCCCcCCCCcCCccCc-----------------CCeEecHHH-hCCCEEEEEEE-cCCCcchhhhhhhhhhhhhhhhc-c
Confidence            5688888665444211                 376666555 57788888887 78999999999999999888876 7


Q ss_pred             CeEEEEecCCh-----hhHHhhhcC-CCCCceeEeccchHHHHHhCCCcccccccccccccCHHHHHHHHHHHhcCCccc
Q 015842          264 IQLFAVLHEYI-----ESEVKDFWP-RYWGGVVVYDQGMEFFKALGGGKLLKDKFLSGFLLNPRAIANYKRARTLGVEQN  337 (399)
Q Consensus       264 V~LVaIspE~~-----e~~ik~F~~-~~l~f~VLsDp~r~lYkaLGl~r~~r~s~lsgfl~~P~v~~~~~rA~~~G~~gn  337 (399)
                      +++|+|.....     ...++.|.. ..++|+++.|++..++++||+.                                
T Consensus        62 ~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~~D~~~~~~~~~~v~--------------------------------  109 (143)
T d2b5xa1          62 LNVVAVHMPRSEDDLDPGKIKETAAEHDITQPIFVDSDHALTDAFENE--------------------------------  109 (143)
T ss_dssp             SEEEEEECCCSTTTSSHHHHHHHHHHTTCCSCEEECSSCHHHHHTCCC--------------------------------
T ss_pred             ccceeEEeeccccccchhhhhhHHHhhccCccccccCccchHHHcCCC--------------------------------
Confidence            89999975321     123566664 6789999999999999988774                                


Q ss_pred             cCCCCcccceEEEEecCCCcEEEEEecCCCCCCCCHHHHHHHHHh
Q 015842          338 FKGEGEIKGGLFIVGRGRSGIAYQFIERNFGDWAPLAEVIEICTQ  382 (399)
Q Consensus       338 ~~GD~~qLGGtFVId~gGg~I~yah~d~d~gDrad~eeVLaAl~~  382 (399)
                            ..|.+||||++| .|+|.|.+.     .+.+++-+++++
T Consensus       110 ------~~P~~~~id~~G-~i~~~~~G~-----~~~~~l~~~l~~  142 (143)
T d2b5xa1         110 ------YVPAYYVFDKTG-QLRHFQAGG-----SGMKMLEKRVNR  142 (143)
T ss_dssp             ------CSSEEEEECTTC-BEEEEEESC-----STTHHHHHHHHH
T ss_pred             ------cCCEEEEECCCC-EEEEEEECC-----CCHHHHHHHHHh
Confidence                  137899999997 899999873     234555555554

>d1zzoa1 c.47.1.10 (A:45-178) Lipoprotein DsbF {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Lipoprotein DsbF
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.43  E-value=9.2e-13  Score=109.59  Aligned_cols=118  Identities=15%  Similarity=0.101  Sum_probs=90.6

Q ss_pred             CCCceechhhccCCCEEEEeecCCCCcchHHHHHHHHhccchhhhcCCeEEEEecCChhhHHhhhcC-CCC-CceeEecc
Q 015842          217 KTPPMKALELWRESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLHEYIESEVKDFWP-RYW-GGVVVYDQ  294 (399)
Q Consensus       217 ~G~~VsLsdL~~~~pvVLvFyRg~gCP~Cr~el~~L~e~~pef~alGV~LVaIspE~~e~~ik~F~~-~~l-~f~VLsDp  294 (399)
                      +|++++++++ +++|+||.|+ ..|||.|+.++..|.+++.+.+  ++.+|+|+........+.|.. ... .|+++.|+
T Consensus        14 ~G~~~~l~~~-~Gk~vll~fw-a~wC~~C~~~~p~l~~l~~~~~--~~~~v~v~~~d~~~~~~~~~~~~~~~~~~~l~D~   89 (134)
T d1zzoa1          14 DGHDFHGESL-LGKPAVLWFW-APWCPTCQGEAPVVGQVAASHP--EVTFVGVAGLDQVPAMQEFVNKYPVKTFTQLADT   89 (134)
T ss_dssp             TSCEEEGGGG-TTSCEEEEEE-CTTCHHHHHHHHHHHHHHHHCT--TSEEEEEECSSCHHHHHHHHHHTTCTTSEEEECT
T ss_pred             CCCEEeHHHh-CCCEEEEEec-ccccCcccccchhhHHHHhhhc--ccccccccccccchhHHHHHHhcCCcceeEEeec
Confidence            5999999996 7788888887 8899999999999999888764  467788776544344666664 344 58999999


Q ss_pred             chHHHHHhCCCcccccccccccccCHHHHHHHHHHHhcCCccccCCCCcccceEEEEecCCCcEEEEEecCCCCCCCCHH
Q 015842          295 GMEFFKALGGGKLLKDKFLSGFLLNPRAIANYKRARTLGVEQNFKGEGEIKGGLFIVGRGRSGIAYQFIERNFGDWAPLA  374 (399)
Q Consensus       295 ~r~lYkaLGl~r~~r~s~lsgfl~~P~v~~~~~rA~~~G~~gn~~GD~~qLGGtFVId~gGg~I~yah~d~d~gDrad~e  374 (399)
                      +..+.+.||+.                                      -+|.+||||++| .|.| +..     ..+.+
T Consensus        90 ~~~~~~~~~v~--------------------------------------~~P~~~iiD~~G-~i~~-~~g-----~~~~~  124 (134)
T d1zzoa1          90 DGSVWANFGVT--------------------------------------QQPAYAFVDPHG-NVDV-VRG-----RMSQD  124 (134)
T ss_dssp             TCHHHHHTTCC--------------------------------------SSSEEEEECTTC-CEEE-EES-----CCCHH
T ss_pred             cchHHHhcCCC--------------------------------------ccCeEEEECCCC-eEEE-EEC-----CCCHH
Confidence            99999988873                                      147899999997 7877 332     34567


Q ss_pred             HHHHHHHhh
Q 015842          375 EVIEICTQL  383 (399)
Q Consensus       375 eVLaAl~~l  383 (399)
                      ++.++++.|
T Consensus       125 ~l~~~i~~L  133 (134)
T d1zzoa1         125 ELTRRVTAL  133 (134)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHhh
Confidence            887777765

>d1nm3a2 c.47.1.10 (A:3-165) N-terminal, Prx domain of Hybrid-Prx5 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: N-terminal, Prx domain of Hybrid-Prx5
species: Haemophilus influenzae [TaxId: 727]

Probab=99.43  E-value=3.4e-13  Score=117.89  Aligned_cols=152  Identities=14%  Similarity=0.120  Sum_probs=105.1

Q ss_pred             CCCCCCCcccccCccccccchhhhcccccccccCCCceechhhccCCCEEEEeecCCCCcchHHHHHHHHhccc-hhhhc
Q 015842          184 VNEKVAPYSAIENISIQKLTPEYKIGMERLVKTKTPPMKALELWRESPAVLLCIRRPGCIMCRAEAHQLYAKKP-IFDAL  262 (399)
Q Consensus       184 ~~~~~apl~~L~~i~l~~l~~~~~~g~~~~v~~~G~~VsLsdL~~~~pvVLvFyRg~gCP~Cr~el~~L~e~~p-ef~al  262 (399)
                      ..|+++|.|+|+..     +++           +.+.++++++++++++||+||.+.++|.|..++..+.+... .++..
T Consensus         2 ~~Gd~~Pdftl~~~-----~~~-----------~~~~~slsd~~~gk~VVL~f~P~afTp~Ct~e~~~~~~~~~~~~~~~   65 (163)
T d1nm3a2           2 MEGKKVPQVTFRTR-----QGD-----------KWVDVTTSELFDNKTVIVFSLPGAFTPTCSSSHLPRYNELAPVFKKY   65 (163)
T ss_dssp             CTTSBCCCCEEEEE-----ETT-----------EEEEEEHHHHHTTSEEEEEEESCSSCHHHHHTHHHHHHHHHHHHHHT
T ss_pred             CCCCCCCCeEEEEE-----cCC-----------CceEEEHHHHhCCCeEEEEEEeccccccchhhhhhhhhhcchhhhhh
Confidence            46899995555433     211           13589999999999999999999999999999999887654 44444


Q ss_pred             CC--eEEEEecCChhhHHhhhcC-CCCCceeEeccchHHHHHhCCCcccccccccccccCHHHHHHHHHHHhcCCccccC
Q 015842          263 GI--QLFAVLHEYIESEVKDFWP-RYWGGVVVYDQGMEFFKALGGGKLLKDKFLSGFLLNPRAIANYKRARTLGVEQNFK  339 (399)
Q Consensus       263 GV--~LVaIspE~~e~~ik~F~~-~~l~f~VLsDp~r~lYkaLGl~r~~r~s~lsgfl~~P~v~~~~~rA~~~G~~gn~~  339 (399)
                      ++  .+++++.+.... .+.|.. +...+++++|+...+.++||+..    .      . +.          .|.     
T Consensus        66 ~~~~vv~~~s~d~~~~-~a~~~~~~~~~~~llsD~~~~~~~~~g~~~----~------~-~~----------~g~-----  118 (163)
T d1nm3a2          66 GVDDILVVSVNDTFVM-NAWKEDEKSENISFIPDGNGEFTEGMGMLV----G------K-ED----------LGF-----  118 (163)
T ss_dssp             TCCEEEEEESSCHHHH-HHHHHHTTCTTSEEEECTTSHHHHHTTCEE----E------C-TT----------TTC-----
T ss_pred             cccceeeeecCCHHHH-HHHhhhhccCceeeeccCChHHHHHhhhhc----c------c-cc----------ccc-----
Confidence            44  344444443322 333333 56789999999999999999851    0      0 00          011     


Q ss_pred             CCCcccceEEEEecCCCcEEEEEecCCCCCC----CCHHHHHHHHH
Q 015842          340 GEGEIKGGLFIVGRGRSGIAYQFIERNFGDW----APLAEVIEICT  381 (399)
Q Consensus       340 GD~~qLGGtFVId~gGg~I~yah~d~d~gDr----ad~eeVLaAl~  381 (399)
                      | .....++|||| +| +|.|.|++.+...+    .+.++||+.|.
T Consensus       119 g-~~s~R~~~Iid-dG-~I~~~~v~~~~~g~~~~~s~ae~vL~~L~  161 (163)
T d1nm3a2         119 G-KRSWRYSMLVK-NG-VVEKMFIEPNEPGDPFKVSDADTMLKYLA  161 (163)
T ss_dssp             C-EEECCEEEEEE-TT-EEEEEEECCSCSSCCCSSSSHHHHHHHHC
T ss_pred             c-cccceEEEEEe-CC-EEEEEEEecCCCCCCccccCHHHHHHHHc
Confidence            1 23467999999 75 99999999765332    36888888875

>d1knga_ c.47.1.10 (A:) Thioredoxin-like protein CcmG (CycY, DsbE) {Bradyrhizobium japonicum [TaxId: 375]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin-like protein CcmG (CycY, DsbE)
species: Bradyrhizobium japonicum [TaxId: 375]

Probab=99.32  E-value=1.3e-11  Score=104.04  Aligned_cols=134  Identities=16%  Similarity=0.128  Sum_probs=97.0

Q ss_pred             CCcccccCccccccchhhhcccccccccCCCceechhhccCCCEEEEeecCCCCcchHHHHHHHHhccchhhhcCCeEEE
Q 015842          189 APYSAIENISIQKLTPEYKIGMERLVKTKTPPMKALELWRESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFA  268 (399)
Q Consensus       189 apl~~L~~i~l~~l~~~~~~g~~~~v~~~G~~VsLsdL~~~~pvVLvFyRg~gCP~Cr~el~~L~e~~pef~alGV~LVa  268 (399)
                      ||.+.|+.+.-.++.           ...+..++++++ +++++||.|+ ..|||.|+.++..|.+....   .++.+++
T Consensus         3 aP~~~lp~~~g~~~~-----------~~~~~~~~~~~~-kgK~vll~fw-a~wC~~C~~~~p~l~~l~~~---~~~~~~~   66 (144)
T d1knga_           3 APQTALPPLEGLQAD-----------NVQVPGLDPAAF-KGKVSLVNVW-ASWCVPCHDEAPLLTELGKD---KRFQLVG   66 (144)
T ss_dssp             CCCCCBCCCTTCEET-----------TEECCCBCGGGG-TTSCEEEEEE-CTTCHHHHHHHHHHHHHTTC---TTSEEEE
T ss_pred             CCCCCCCCCCCcccc-----------CCcCCccCHHHh-CCCEEEEEee-ccccccccccCchhhhhhhc---cCceeEE
Confidence            677777666433222           223678889995 7789999999 88999999999999887554   4789999


Q ss_pred             EecCChhhHHhhhcC-CCCCc-eeEeccchHHHHHhCCCcccccccccccccCHHHHHHHHHHHhcCCccccCCCCcccc
Q 015842          269 VLHEYIESEVKDFWP-RYWGG-VVVYDQGMEFFKALGGGKLLKDKFLSGFLLNPRAIANYKRARTLGVEQNFKGEGEIKG  346 (399)
Q Consensus       269 IspE~~e~~ik~F~~-~~l~f-~VLsDp~r~lYkaLGl~r~~r~s~lsgfl~~P~v~~~~~rA~~~G~~gn~~GD~~qLG  346 (399)
                      |..+......+.|.. ....+ .++.|++..+.+.||+.                                      .+|
T Consensus        67 i~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~--------------------------------------~~P  108 (144)
T d1knga_          67 INYKDAADNARRFLGRYGNPFGRVGVDANGRASIEWGVY--------------------------------------GVP  108 (144)
T ss_dssp             EEESCCHHHHHHHHHHHCCCCSEEEEETTSHHHHHTTCC--------------------------------------SSC
T ss_pred             EEeeechHHHHHHHHHcCCccccccccccchhhhhcCcc--------------------------------------ccc
Confidence            987665554566653 34444 48999999999988773                                      147


Q ss_pred             eEEEEecCCCcEEEEEecCCCCCCCCHHHHHHHHHh
Q 015842          347 GLFIVGRGRSGIAYQFIERNFGDWAPLAEVIEICTQ  382 (399)
Q Consensus       347 GtFVId~gGg~I~yah~d~d~gDrad~eeVLaAl~~  382 (399)
                      .+||||++| .|++.|.+.     .+.+++.++++.
T Consensus       109 ~~~liD~~G-~i~~~~~G~-----~~~~~l~~~i~~  138 (144)
T d1knga_         109 ETFVVGREG-TIVYKLVGP-----ITPDNLRSVLLP  138 (144)
T ss_dssp             EEEEECTTS-BEEEEEESC-----CCHHHHHHTHHH
T ss_pred             eEEEEcCCC-eEEEEEeCC-----CCHHHHHHHHHH
Confidence            899999996 899998753     345555555444

>d1z5ye1 c.47.1.10 (E:49-184) Thioredoxin-like protein CcmG (CycY, DsbE) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin-like protein CcmG (CycY, DsbE)
species: Escherichia coli [TaxId: 562]

Probab=99.27  E-value=3e-11  Score=100.81  Aligned_cols=120  Identities=17%  Similarity=0.056  Sum_probs=90.3

Q ss_pred             ccCCCceechhhccCCCEEEEeecCCCCcchHHHHHHHHhccchhhhcCCeEEEEecCChhhHHhhhcC--CCCCceeEe
Q 015842          215 KTKTPPMKALELWRESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLHEYIESEVKDFWP--RYWGGVVVY  292 (399)
Q Consensus       215 ~~~G~~VsLsdL~~~~pvVLvFyRg~gCP~Cr~el~~L~e~~pef~alGV~LVaIspE~~e~~ik~F~~--~~l~f~VLs  292 (399)
                      +..|+.+++.++-+++|+||.|+ ..|||.|+.++-.|.+.    ...|+.+|+|..+........+..  +...+.++.
T Consensus         6 d~~g~~~~~~~l~~Gk~vvl~Fw-atWC~pC~~e~p~l~~~----~~~~~~vi~i~~~~~~~~~~~~~~~~~~~~~~~~~   80 (136)
T d1z5ye1           6 DNPGQFYQADVLTQGKPVLLNVW-ATWCPTSRAEHQYLNQL----SAQGIRVVGMNYKDDRQKAISWLKELGNPYALSLF   80 (136)
T ss_dssp             SSTTCEECHHHHHSSSCEEEEEE-CTTCHHHHHHHHHHHHH----HHTTCCEEEEEESCCHHHHHHHHHHHCCCCSEEEE
T ss_pred             cCCCcEecHHHHcCCCEEEEEEE-cCcCCCcCccccchhhh----hhhhhhhcccccccchhhhHHHHHHcCCccceeec
Confidence            34599999888877889999888 77999999999888764    567899999998765444455442  444556889


Q ss_pred             ccchHHHHHhCCCcccccccccccccCHHHHHHHHHHHhcCCccccCCCCcccceEEEEecCCCcEEEEEecCCCCCCCC
Q 015842          293 DQGMEFFKALGGGKLLKDKFLSGFLLNPRAIANYKRARTLGVEQNFKGEGEIKGGLFIVGRGRSGIAYQFIERNFGDWAP  372 (399)
Q Consensus       293 Dp~r~lYkaLGl~r~~r~s~lsgfl~~P~v~~~~~rA~~~G~~gn~~GD~~qLGGtFVId~gGg~I~yah~d~d~gDrad  372 (399)
                      |++..+.++||+.                                      -+|.+||||++| +|++.|.+.     .+
T Consensus        81 d~~~~~~~~~~v~--------------------------------------~~P~~~liD~~G-~i~~~~~G~-----~~  116 (136)
T d1z5ye1          81 DGDGMLGLDLGVY--------------------------------------GAPETFLIDGNG-IIRYRHAGD-----LN  116 (136)
T ss_dssp             ESSCHHHHHHTCC--------------------------------------SBSEEEEECTTS-CEEEEEESC-----CC
T ss_pred             ccchhHHHhcccC--------------------------------------CcceEEEEcCCC-EEEEEEEcC-----CC
Confidence            9999999888763                                      158999999996 899999874     24


Q ss_pred             HHHHHHHHHhh
Q 015842          373 LAEVIEICTQL  383 (399)
Q Consensus       373 ~eeVLaAl~~l  383 (399)
                      .+++-+.++.+
T Consensus       117 ~~~l~~~i~~l  127 (136)
T d1z5ye1         117 PRVWEEEIKPL  127 (136)
T ss_dssp             HHHHHHHTHHH
T ss_pred             HHHHHHHHHHH
Confidence            45554444443

>d1xzoa1 c.47.1.10 (A:3-174) Thioredoxin-like protein Sco1 (YpmQ), soluble domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin-like protein Sco1 (YpmQ), soluble domain
species: Bacillus subtilis [TaxId: 1423]

Probab=99.24  E-value=3.3e-11  Score=104.91  Aligned_cols=137  Identities=9%  Similarity=0.109  Sum_probs=89.4

Q ss_pred             CCCceechhhccCCCEEEEeecCCCCc-chHHHHHHHHhccchhhhcC--CeEEEEec----CChhhHHhhhcC-CCCCc
Q 015842          217 KTPPMKALELWRESPAVLLCIRRPGCI-MCRAEAHQLYAKKPIFDALG--IQLFAVLH----EYIESEVKDFWP-RYWGG  288 (399)
Q Consensus       217 ~G~~VsLsdL~~~~pvVLvFyRg~gCP-~Cr~el~~L~e~~pef~alG--V~LVaIsp----E~~e~~ik~F~~-~~l~f  288 (399)
                      +|++|+++++ +++++||.|+ ..||| .|..++..|.+++.++.+.|  +.+|+|+-    ++++. +++|.+ ....|
T Consensus        20 ~G~~vsl~d~-~Gk~vvl~F~-~t~Cp~~C~~~~~~l~~~~~~~~~~~~~v~~v~isiDp~~Dtp~~-l~~y~~~~~~~~   96 (172)
T d1xzoa1          20 DGKNVSLESL-KGEVWLADFI-FTNCETICPPMTAHMTDLQKKLKAENIDVRIISFSVDPENDKPKQ-LKKFAANYPLSF   96 (172)
T ss_dssp             TSCEEETGGG-TTCCEEEEEE-CSCCSSCCCSHHHHHHHHHHHHHHTTCCCEEEEEESCTTTCCHHH-HHHHHTTSCCCG
T ss_pred             CCCEEcHHHh-CCCEEEEEEe-cccccccccccchhhhhhhhhhccccccccccccccccccchHHH-HHHHHHHhcccc
Confidence            5999999996 6666666554 67776 78888888888888888766  67788874    44544 778875 22333


Q ss_pred             ---eeEeccchHHHHHhCCCcccccccccccccCHHHHHHHHHHHhcCCccccCCCC-c-ccceEEEEecCCCcEEEEEe
Q 015842          289 ---VVVYDQGMEFFKALGGGKLLKDKFLSGFLLNPRAIANYKRARTLGVEQNFKGEG-E-IKGGLFIVGRGRSGIAYQFI  363 (399)
Q Consensus       289 ---~VLsDp~r~lYkaLGl~r~~r~s~lsgfl~~P~v~~~~~rA~~~G~~gn~~GD~-~-qLGGtFVId~gGg~I~yah~  363 (399)
                         .++++++......++...                        ...+.....|+. + -.+.+||||++| +|+..|.
T Consensus        97 ~~w~~lt~~~~~~~~~~~~~~------------------------~~~~~~~~~~~~~~~H~~~~~liD~~G-~i~~~~~  151 (172)
T d1xzoa1          97 DNWDFLTGYSQSEIEEFALKS------------------------FKAIVKKPEGEDQVIHQSSFYLVGPDG-KVLKDYN  151 (172)
T ss_dssp             GGEEEEBCSCHHHHHHHHHHH------------------------HCCCCCCCSSCCSCCSCCEEEEECTTS-EEEEEEE
T ss_pred             ccceeeccchHHHHHHHHHhh------------------------eeeEEeccCCCceEeeeeEEEEEcCCC-eEEEEEc
Confidence               467777666554432210                        001111112222 1 237899999996 8998776


Q ss_pred             cCCCCCCCCHHHHHHHHHhhh
Q 015842          364 ERNFGDWAPLAEVIEICTQLQ  384 (399)
Q Consensus       364 d~d~gDrad~eeVLaAl~~l~  384 (399)
                      ..   +..+.++|++-+++++
T Consensus       152 g~---~~~~~~~l~~dik~~~  169 (172)
T d1xzoa1         152 GV---ENTPYDDIISDVKSAS  169 (172)
T ss_dssp             SS---SSCCHHHHHHHHHHHT
T ss_pred             CC---CCCCHHHHHHHHHHHH
Confidence            53   3356889988888765

>d1o8xa_ c.47.1.10 (A:) Tryparedoxin I {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Tryparedoxin I
species: Crithidia fasciculata [TaxId: 5656]

Probab=99.02  E-value=2.8e-10  Score=95.16  Aligned_cols=86  Identities=10%  Similarity=0.074  Sum_probs=60.5

Q ss_pred             CCCceechhhccCCCEEEEeecCCCCcchHHHHHHHHhccchhh-hcCCeEEEEecCChhhHHhhhcC--CCCCce-eEe
Q 015842          217 KTPPMKALELWRESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFD-ALGIQLFAVLHEYIESEVKDFWP--RYWGGV-VVY  292 (399)
Q Consensus       217 ~G~~VsLsdL~~~~pvVLvFyRg~gCP~Cr~el~~L~e~~pef~-alGV~LVaIspE~~e~~ik~F~~--~~l~f~-VLs  292 (399)
                      .|++|++++| ++++ ||++|-..|||.|..++..|.+++.++. ..++.+|+|+.+........+..  +...++ ++.
T Consensus        15 ~g~~v~l~~l-~GK~-vll~Fwa~wC~~C~~~~~~l~~l~~~~~~~~~~~~v~is~d~~~~~~~~~~~~~~~~~~~~~~~   92 (144)
T d1o8xa_          15 GDGEVEVKSL-AGKL-VFFYFSASWCPPARGFTPQLIEFYDKFHESKNFEVVFCTWDEEEDGFAGYFAKMPWLAVPFAQS   92 (144)
T ss_dssp             TTEEEEGGGG-TTCE-EEEEEECTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCCSHHHHHHHHTTCSSEECCGGGH
T ss_pred             CCCEEeHHHh-CCCE-EEEEeccccccccccccchhHHhhhhcccccccccccccccccHHHHHHHHhhccccceeeecc
Confidence            5999999997 5555 5555559999999999999999988884 45899999998765444555443  222222 233


Q ss_pred             ccchHHHHHhCC
Q 015842          293 DQGMEFFKALGG  304 (399)
Q Consensus       293 Dp~r~lYkaLGl  304 (399)
                      |+..++.+.||+
T Consensus        93 d~~~~l~~~y~v  104 (144)
T d1o8xa_          93 EAVQKLSKHFNV  104 (144)
T ss_dssp             HHHHHHHHHTTC
T ss_pred             cchhhHHHHcCC
Confidence            555667776666

>d1o73a_ c.47.1.10 (A:) Tryparedoxin I {Trypanosoma brucei brucei [TaxId: 5702]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Tryparedoxin I
species: Trypanosoma brucei brucei [TaxId: 5702]

Probab=98.97  E-value=1.3e-09  Score=91.95  Aligned_cols=65  Identities=17%  Similarity=0.167  Sum_probs=52.0

Q ss_pred             CCCceechhhccCCCEEEEeecCCCCcchHHHHHHHHhccchhh-hcCCeEEEEecCChhhHHhhhcC
Q 015842          217 KTPPMKALELWRESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFD-ALGIQLFAVLHEYIESEVKDFWP  283 (399)
Q Consensus       217 ~G~~VsLsdL~~~~pvVLvFyRg~gCP~Cr~el~~L~e~~pef~-alGV~LVaIspE~~e~~ik~F~~  283 (399)
                      +|..|+++++ +++++||.|+ ..||+.|+.++..|++.+.++. ..++.+|+|+.+......++|..
T Consensus        17 ~~~~v~l~~~-~GK~vvl~Fw-atwC~~C~~~~p~l~~l~~~~~~~~~~~vi~is~d~~~~~~~~~~~   82 (144)
T d1o73a_          17 KSGEVSLGSL-VGKTVFLYFS-ASWCPPCRGFTPVLAEFYEKHHVAKNFEVVLISWDENESDFHDYYG   82 (144)
T ss_dssp             TTSCBCSGGG-TTCEEEEEEE-CTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCSSHHHHHHHHT
T ss_pred             CCCEEeHHHh-CCCEEEEEeC-hhhCccchhhhHHHHHHHHHHhhccCeEEEEEecchhHHHHHHHHH
Confidence            5778999996 6666666666 8899999999999999988884 56899999998766555566654

>d1xiya1 c.47.1.10 (A:2-180) 1-Cys peroxiredoxin {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: 1-Cys peroxiredoxin
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=98.83  E-value=1.7e-08  Score=90.22  Aligned_cols=133  Identities=12%  Similarity=0.089  Sum_probs=102.5

Q ss_pred             CceechhhccCCCEEEEeecCCCCcchHH-HHHHHHhccchh-hhcCC-eEEEEecCChhhHHhhhcC-CCCCc-eeEec
Q 015842          219 PPMKALELWRESPAVLLCIRRPGCIMCRA-EAHQLYAKKPIF-DALGI-QLFAVLHEYIESEVKDFWP-RYWGG-VVVYD  293 (399)
Q Consensus       219 ~~VsLsdL~~~~pvVLvFyRg~gCP~Cr~-el~~L~e~~pef-~alGV-~LVaIspE~~e~~ik~F~~-~~l~f-~VLsD  293 (399)
                      +++++.++++++++||+++.+.+.|.|.. ++-.+.+.+++| ++.|+ .+++|+-.++-- .+.|.+ ...++ .+++|
T Consensus        32 ~~~~~~d~f~~KkVvl~~vPgAFTp~Cs~~hlp~y~~~~d~f~k~~gvd~I~~iSvnD~fv-~~aW~~~~~~~~I~~lsD  110 (179)
T d1xiya1          32 TSIDTHELFNNKKILLISLPGAFTPTCSTKMIPGYEEEYDYFIKENNFDDIYCITNNDIYV-LKSWFKSMDIKKIKYISD  110 (179)
T ss_dssp             EEEEHHHHSTTCEEEEEECSCTTCHHHHHTHHHHHHHTHHHHHTTSCCSEEEEEESSCHHH-HHHHHHHTTCCSSEEEEC
T ss_pred             eEeeHHHHhCCCeEEEEEcccccCCccchhhCcchhhhHHHHHHhcCCceEEEEecCCHHH-HHHHHhhcCcceEEEeeC
Confidence            47899999999999999999999999966 688999999999 68898 578888777743 666764 44544 79999


Q ss_pred             cchHHHHHhCCCcccccccccccccCHHHHHHHHHHHhcCCccccCCCCcccceEEEEecCCCcEEEEEecCCCCC----
Q 015842          294 QGMEFFKALGGGKLLKDKFLSGFLLNPRAIANYKRARTLGVEQNFKGEGEIKGGLFIVGRGRSGIAYQFIERNFGD----  369 (399)
Q Consensus       294 p~r~lYkaLGl~r~~r~s~lsgfl~~P~v~~~~~rA~~~G~~gn~~GD~~qLGGtFVId~gGg~I~yah~d~d~gD----  369 (399)
                      ++..+.++||+...     ..+                .|+.      ..-...++||+ +| .|.+.+++++..+    
T Consensus       111 ~~g~f~k~lg~~~d-----~~~----------------~g~G------~Rs~R~a~iid-dg-~I~~~~vE~~~~~~~~~  161 (179)
T d1xiya1         111 GNSSFTDSMNMLVD-----KSN----------------FFMG------MRPWRFVAIVE-NN-ILVKMFQEKDKQHNIQT  161 (179)
T ss_dssp             TTSHHHHHTTCEEE-----CGG----------------GTCC------EEECCEEEEEE-TT-EEEEEEECSSCCTTCSS
T ss_pred             CchHHHHhhhcccc-----ccc----------------CCCe------eEEeeEEEEEE-CC-EEEEEEEeCCCCCCCCC
Confidence            99999999999621     000                0110      01135799999 65 8999999987764    


Q ss_pred             ----CCCHHHHHHHHH
Q 015842          370 ----WAPLAEVIEICT  381 (399)
Q Consensus       370 ----rad~eeVLaAl~  381 (399)
                          ....+.||+.|+
T Consensus       162 dp~~vSsae~iL~~L~  177 (179)
T d1xiya1         162 DPYDISTVNNVKEFLK  177 (179)
T ss_dssp             CCCSTTSHHHHHHHHH
T ss_pred             CCcccCCHHHHHHHHh
Confidence                567888888876

>d1i5ga_ c.47.1.10 (A:) Tryparedoxin II {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Tryparedoxin II
species: Crithidia fasciculata [TaxId: 5656]

Probab=98.80  E-value=5.5e-09  Score=88.67  Aligned_cols=89  Identities=13%  Similarity=0.150  Sum_probs=65.1

Q ss_pred             cccCCCceechhhccCCCEEEEeecCCCCcchHHHHHHHHhccchhhh-cCCeEEEEecCChhhHHhhhcC-CCCCceeE
Q 015842          214 VKTKTPPMKALELWRESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDA-LGIQLFAVLHEYIESEVKDFWP-RYWGGVVV  291 (399)
Q Consensus       214 v~~~G~~VsLsdL~~~~pvVLvFyRg~gCP~Cr~el~~L~e~~pef~a-lGV~LVaIspE~~e~~ik~F~~-~~l~f~VL  291 (399)
                      ++..|..|++++| + +++|++.|=..||+.|+.++..|.+++.++.+ .++.+|+|+.+......++|.. ..+.+..+
T Consensus        14 l~~~~~~v~ls~l-~-GK~vll~FwAtWC~pC~~~~p~L~~l~~~~~~~~~~~vi~vs~D~~~~~~~~~~~~~~~~~~~~   91 (144)
T d1i5ga_          14 LKGAAADIALPSL-A-GKTVFFYFSASWCPPSRAFTPQLIDFYKAHAEKKNFEVMLISWDESAEDFKDYYAKMPWLALPF   91 (144)
T ss_dssp             EETTEEEEEGGGG-T-TSEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCSSHHHHHHHHTTCSSEECCT
T ss_pred             ccCCCCEeeHHHc-C-CCEEEEEEEecCCchHhhhhHhHHHHHHHHHhccCcEEEEEeccccHHHHHHHHHhCCCCceee
Confidence            3556889999997 4 45677777889999999999999998888865 4789999998765544566654 45555556


Q ss_pred             eccch--HHHHHhCC
Q 015842          292 YDQGM--EFFKALGG  304 (399)
Q Consensus       292 sDp~r--~lYkaLGl  304 (399)
                      .|.+.  .+.+.||+
T Consensus        92 ~d~~~~~~l~~~y~v  106 (144)
T d1i5ga_          92 EDRKGMEFLTTGFDV  106 (144)
T ss_dssp             TCHHHHHHHHHHTTC
T ss_pred             EChHHHHHHHHHCCC
Confidence            66553  35666655

>d2b7ka1 c.47.1.10 (A:111-279) Thioredoxin-like protein Sco1 (YpmQ), soluble domain {Baker's yeast(Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin-like protein Sco1 (YpmQ), soluble domain
species: Baker's yeast(Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.46  E-value=1.3e-07  Score=77.81  Aligned_cols=143  Identities=7%  Similarity=-0.067  Sum_probs=76.9

Q ss_pred             CCCceechhhccCCCEEEEeecCCCCcchHHHHHHHHhccchhhhcC---CeEEEEecCCh---hhHHhhhcC-CCCCce
Q 015842          217 KTPPMKALELWRESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALG---IQLFAVLHEYI---ESEVKDFWP-RYWGGV  289 (399)
Q Consensus       217 ~G~~VsLsdL~~~~pvVLvFyRg~gCP~Cr~el~~L~e~~pef~alG---V~LVaIspE~~---e~~ik~F~~-~~l~f~  289 (399)
                      +|++|+++++ +++++||.|+.-.+|+.|......+......+...+   +.++.++....   ......+.. ....+.
T Consensus        15 ~G~~vsl~~~-~GK~vli~f~~t~c~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   93 (169)
T d2b7ka1          15 YGNEFTEKNL-LGKFSIIYFGFSNCPDICPDELDKLGLWLNTLSSKYGITLQPLFITCDPARDSPAVLKEYLSDFHPSIL   93 (169)
T ss_dssp             TSCEEEGGGG-TTSCEEEEEECTTCCSHHHHHHHHHHHHHHHHHHHHCCCCEEEEEESCTTTCCHHHHHHHHTTSCTTCE
T ss_pred             CCCEECHHHH-CCCEEEEEEeccccCCcccchhhhhhhhhhhccccccccceeeeeccccccCchhhhhhhhcccccccc
Confidence            5999999997 777888888877777889888888877766665543   44444443222   111233322 222333


Q ss_pred             eEeccch---HHHHHhCCCcccccccccccccCHHHHHHHHHHHhcCCccccCCCCcccceEEEEecCCCcEEEEEecCC
Q 015842          290 VVYDQGM---EFFKALGGGKLLKDKFLSGFLLNPRAIANYKRARTLGVEQNFKGEGEIKGGLFIVGRGRSGIAYQFIERN  366 (399)
Q Consensus       290 VLsDp~r---~lYkaLGl~r~~r~s~lsgfl~~P~v~~~~~rA~~~G~~gn~~GD~~qLGGtFVId~gGg~I~yah~d~d  366 (399)
                      .+.....   .....++...          ...+.            ......+..-..+.+||||++| .|+..|... 
T Consensus        94 ~~~~~~~~~~~~~~~~~~~~----------~~~~~------------~~~~~~~~i~h~~~~fLID~~G-~vv~~~~~~-  149 (169)
T d2b7ka1          94 GLTGTFDEVKNACKKYRVYF----------STPPN------------VKPGQDYLVDHSIFFYLMDPEG-QFVDALGRN-  149 (169)
T ss_dssp             EEECCHHHHHHHHHHTTC------------------------------------CTTTCCCEEEECTTS-CEEEEECTT-
T ss_pred             ccccchhhhhhhhhhhheee----------eeccc------------CCcccCceeeccceEEEECCCC-eEEEEECCC-
Confidence            3333332   3333443320          00000            0000001111247899999997 788776543 


Q ss_pred             CCCCCCHHHHHHHHHhhh
Q 015842          367 FGDWAPLAEVIEICTQLQ  384 (399)
Q Consensus       367 ~gDrad~eeVLaAl~~l~  384 (399)
                      .......++|++.++++-
T Consensus       150 ~~~~~~~~~I~e~ik~ll  167 (169)
T d2b7ka1         150 YDEKTGVDKIVEHVKSYV  167 (169)
T ss_dssp             CCTTHHHHHHHHHHHHCC
T ss_pred             CCHHHHHHHHHHHHHHHh
Confidence            222233567777777653

>d1wp0a1 c.47.1.10 (A:138-297) Thioredoxin-like protein Sco1 (YpmQ), soluble domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin-like protein Sco1 (YpmQ), soluble domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.36  E-value=2.2e-06  Score=70.65  Aligned_cols=135  Identities=9%  Similarity=0.026  Sum_probs=76.0

Q ss_pred             cCCCceechhhccCCCEEEEeecCCCCc-chHHHHHHHHhccchhhhcCC----eEEEEecC----ChhhHHhhhc-CCC
Q 015842          216 TKTPPMKALELWRESPAVLLCIRRPGCI-MCRAEAHQLYAKKPIFDALGI----QLFAVLHE----YIESEVKDFW-PRY  285 (399)
Q Consensus       216 ~~G~~VsLsdL~~~~pvVLvFyRg~gCP-~Cr~el~~L~e~~pef~alGV----~LVaIspE----~~e~~ik~F~-~~~  285 (399)
                      .+|++|+++++ +++++|| +|-..||| .|......+.+++.++...+.    .++.++.+    .... ...+. ...
T Consensus         8 ~~G~~vsl~d~-~GK~vll-~F~~t~C~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~   84 (160)
T d1wp0a1           8 HTGERKTDKDY-LGQWLLI-YFGFTHCPDVCPEELEKMIQVVDEIDSITTLPDLTPLFISIDPERDTKEA-IANYVKEFS   84 (160)
T ss_dssp             TTSCEEEGGGG-TTSEEEE-EEECTTCSSHHHHHHHHHHHHHHHHHHCTTSCCEEEEEEESCTTTCCHHH-HHHHHHTTC
T ss_pred             CCCCEEcHHHh-CCCEEEE-EEECCCCccccccchHHHHHHHHHhhcccccccccccccccCCCcccHHH-HHHHHhhcC
Confidence            36999999996 5555554 55577886 698888888888877766553    33334432    2221 22222 234


Q ss_pred             CCceeEeccch---HHHHHhCCCcccccccccccccCHHHHHHHHHHHhcCCccccCCC--CcccceEEEEecCCCcEEE
Q 015842          286 WGGVVVYDQGM---EFFKALGGGKLLKDKFLSGFLLNPRAIANYKRARTLGVEQNFKGE--GEIKGGLFIVGRGRSGIAY  360 (399)
Q Consensus       286 l~f~VLsDp~r---~lYkaLGl~r~~r~s~lsgfl~~P~v~~~~~rA~~~G~~gn~~GD--~~qLGGtFVId~gGg~I~y  360 (399)
                      .++..+.+...   .+.++|+....            +            .. .+..++  .-..+.+||||++| +|+.
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~------------~------------~~-~~~~~~~~~~H~~~~~LId~~G-~i~~  138 (160)
T d1wp0a1          85 PKLVGLTGTREEVDQVARAYRVYYS------------P------------GP-KDEDEDYIVDHTIIMYLIGPDG-EFLD  138 (160)
T ss_dssp             TTCEEEECCHHHHHHHHHHTTCCEE------------E------------CC-CCGGGCCCEEECCEEEEECTTS-CEEE
T ss_pred             CCcccccCchHHhhHHhhhhheeee------------c------------cc-CCCCCCceEeccceEEEECCCC-cEEE
Confidence            45555554443   34444443210            0            00 000111  11237899999997 7887


Q ss_pred             EEecCCCCCCCCHHHHHHHHHhhh
Q 015842          361 QFIERNFGDWAPLAEVIEICTQLQ  384 (399)
Q Consensus       361 ah~d~d~gDrad~eeVLaAl~~l~  384 (399)
                      .|- .    ..++++|.++++++-
T Consensus       139 ~~~-~----~~~~~~i~~~I~~~l  157 (160)
T d1wp0a1         139 YFG-Q----NKRKGEIAASIATHM  157 (160)
T ss_dssp             EEE-T----TCCHHHHHHHHHHHH
T ss_pred             EEC-C----CCCHHHHHHHHHHHH
Confidence            652 2    345788888877654

>d2f8aa1 c.47.1.10 (A:12-195) Glutathione peroxidase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Glutathione peroxidase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.28  E-value=6.2e-06  Score=73.10  Aligned_cols=83  Identities=8%  Similarity=-0.025  Sum_probs=59.7

Q ss_pred             CCceechhhccCCCEEEEeecCCCCcchHHHHHHHHhccchhhhcCCeEEEEecC-----Ch--hhHHhhhcC-------
Q 015842          218 TPPMKALELWRESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLHE-----YI--ESEVKDFWP-------  283 (399)
Q Consensus       218 G~~VsLsdL~~~~pvVLvFyRg~gCP~Cr~el~~L~e~~pef~alGV~LVaIspE-----~~--e~~ik~F~~-------  283 (399)
                      |++|+|++ ++++.++|++. -.||++|..+..+|++++.++...|-.|+++.+.     .+  ..++++|.+       
T Consensus        14 g~~vsL~~-ykGKvvLivN~-AS~Cg~t~~~y~~L~~L~~ky~~~g~~Il~fP~nqF~~qE~~~~~ei~~f~~~~~~~~~   91 (184)
T d2f8aa1          14 GEPVSLGS-LRGKVLLIENV-ASLGGTTVRDYTQMNELQRRLGPRGLVVLGFPCNQFGHQENAKNEEILNSLKYVRPGGG   91 (184)
T ss_dssp             SSCEEGGG-GTTSEEEEEEE-CSSSTTHHHHHHHHHHHHHHHGGGTEEEEEEECCCSTTTTCSCHHHHHHHHHHTSSCTT
T ss_pred             CCEecHHH-cCCCEEEEEEe-cccCCcchhhhHHHHHhhhhhcccceeEEEeeccccccccccchhhhhhhhheeccccc
Confidence            78999999 46666665555 8899999999999999999999999999999632     11  124666652       


Q ss_pred             CCCCceeEec------cchHHHHHh
Q 015842          284 RYWGGVVVYD------QGMEFFKAL  302 (399)
Q Consensus       284 ~~l~f~VLsD------p~r~lYkaL  302 (399)
                      -...|+|+..      ...-+|+-|
T Consensus        92 ~~~~f~~~~ki~VnG~~a~ply~~L  116 (184)
T d2f8aa1          92 FEPNFMLFEKCEVNGAGAHPLFAFL  116 (184)
T ss_dssp             CCCSSEEBCCCCCSSTTCCHHHHHH
T ss_pred             cccccccceeeeecCCCCCHHHHHH
Confidence            2356777653      334556544

>d1sena_ c.47.1.1 (A:) Thioredoxin-like protein p19, TLP19 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin-like protein p19, TLP19
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.40  E-value=0.00083  Score=54.51  Aligned_cols=70  Identities=16%  Similarity=0.207  Sum_probs=45.6

Q ss_pred             cCCCEEEEeecCCCCcchHHHHHHHHhccchhhhcCCeEEEEec--CChhhHHhhhc-C-CCCCceeEeccchHHHH
Q 015842          228 RESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLH--EYIESEVKDFW-P-RYWGGVVVYDQGMEFFK  300 (399)
Q Consensus       228 ~~~pvVLvFyRg~gCP~Cr~el~~L~e~~pef~alGV~LVaIsp--E~~e~~ik~F~-~-~~l~f~VLsDp~r~lYk  300 (399)
                      +++|++|.| ...||+.|+.....+.+. +++.+.+.++|.|.-  +.... ...+. . +++|.-++.||+.+...
T Consensus        24 ~~Kpvlv~F-~a~wC~~C~~~~~~~~~~-~~~~~~~~~fv~v~vd~~~~~~-~~~~~~~~~~~Pt~~~~d~~G~~~~   97 (135)
T d1sena_          24 SGLPLMVII-HKSWCGACKALKPKFAES-TEISELSHNFVMVNLEDEEEPK-DEDFSPDGGYIPRILFLDPSGKVHP   97 (135)
T ss_dssp             HTCCEEEEE-ECTTCHHHHHHHHHHHTC-HHHHHHHTTSEEEEEEGGGSCS-CGGGCTTCSCSSEEEEECTTSCBCT
T ss_pred             cCCcEEEEE-EecCCCCceecchhhhhh-HHHHHhcCCcEEEeCCCCcCHH-HHHHHhhcccceeEEEECCCCeEEE
Confidence            456666555 889999999999998875 455555556666642  22211 23332 2 56788899999876544

>d2fwha1 c.47.1.1 (A:428-544) Thiol:disulfide interchange protein DsbD, C-terminal domain (DsbD-gamma) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thiol:disulfide interchange protein DsbD, C-terminal domain (DsbD-gamma)
species: Escherichia coli [TaxId: 562]

Probab=95.90  E-value=0.0054  Score=48.05  Aligned_cols=69  Identities=13%  Similarity=0.190  Sum_probs=39.8

Q ss_pred             cCCCEEEEeecCCCCcchHHHHHHHHhccchhhh-c-CCeEEEEe--cCChhh--HHhhhcCCCCCceeEeccchHH
Q 015842          228 RESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDA-L-GIQLFAVL--HEYIES--EVKDFWPRYWGGVVVYDQGMEF  298 (399)
Q Consensus       228 ~~~pvVLvFyRg~gCP~Cr~el~~L~e~~pef~a-l-GV~LVaIs--pE~~e~--~ik~F~~~~l~f~VLsDp~r~l  298 (399)
                      +++|+||.|+ ..||+.|+..-..+.+. +++.+ . ++..+.|-  -+....  ..+.|.-.++|.-++.|++.+.
T Consensus        21 ~gK~vlv~F~-a~wC~~C~~~~~~~~~~-~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~Pt~~~~~~~G~~   95 (117)
T d2fwha1          21 KGKPVMLDLY-ADWCVACKEFEKYTFSD-PQVQKALADTVLLQANVTANDAQDVALLKHLNVLGLPTILFFDGQGQE   95 (117)
T ss_dssp             TTSCEEEEEE-CTTCHHHHHHHHHTTTS-HHHHHHTTTSEEEEEECTTCCHHHHHHHHHTTCCSSSEEEEECTTSCB
T ss_pred             CCCeEEEEEe-cccCCcccccchhHHhH-HHHHHhccceEEEecccccchhHHHHHHhhhehhhceEEEEEeCCCcE
Confidence            4568877777 79999999877666433 22221 1 33444443  222211  1233433678888999998543

>d2b5ea4 c.47.1.2 (A:23-141) Protein disulfide isomerase, PDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.74  E-value=0.0094  Score=47.29  Aligned_cols=65  Identities=14%  Similarity=0.022  Sum_probs=44.9

Q ss_pred             chhhccCCCEEEEeecCCCCcchHHHHHHHHhccchhhhcCCeEEEEecCChhhHHhhhcCCCCC
Q 015842          223 ALELWRESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLHEYIESEVKDFWPRYWG  287 (399)
Q Consensus       223 LsdL~~~~pvVLvFyRg~gCP~Cr~el~~L~e~~pef~alGV~LVaIspE~~e~~ik~F~~~~l~  287 (399)
                      +.++.+....+|+.|...||+.|+.....+.++...+...++.++.|-.+........|.-..+|
T Consensus        20 f~~~i~~~~~~lV~fya~wC~~C~~~~~~~~~la~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~P   84 (119)
T d2b5ea4          20 FNEYIQSHDLVLAEFFAPWCGHCKNMAPEYVKAAETLVEKNITLAQIDCTENQDLCMEHNIPGFP   84 (119)
T ss_dssp             HHHHHTTCSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTTTCEEEEEETTTCHHHHHHTTCCSSS
T ss_pred             HHHHHhcCCeEEEEEECCccCcccccchhhhhhhhhhcccceeeeeeeccchHHHHHHhccccCC
Confidence            45566655566666777999999999998888777776667888888776554433444323444

>d1thxa_ c.47.1.1 (A:) Thioredoxin {Anabaena sp., pcc 7120 [TaxId: 1167]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Anabaena sp., pcc 7120 [TaxId: 1167]

Probab=95.65  E-value=0.014  Score=45.23  Aligned_cols=68  Identities=9%  Similarity=0.104  Sum_probs=43.2

Q ss_pred             CCCEEEEeecCCCCcchHHHHHHHHhccchhhhcCCeEEEEecCChhhHHhhhcCCCCCceeEeccchHH
Q 015842          229 ESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLHEYIESEVKDFWPRYWGGVVVYDQGMEF  298 (399)
Q Consensus       229 ~~pvVLvFyRg~gCP~Cr~el~~L~e~~pef~alGV~LVaIspE~~e~~ik~F~~~~l~f~VLsDp~r~l  298 (399)
                      ++|++|.|| ..||+.|+.....|.++..++.. .+.++.|-.+.-....+.|.=..+|--++.+.+..+
T Consensus        20 ~~~vlv~f~-a~wC~~C~~~~~~~~~~~~~~~~-~~~~~~vd~d~~~~l~~~~~I~~~Pt~~~~~~g~~v   87 (108)
T d1thxa_          20 EQPVLVYFW-ASWCGPCQLMSPLINLAANTYSD-RLKVVKLEIDPNPTTVKKYKVEGVPALRLVKGEQIL   87 (108)
T ss_dssp             SSCEEEEEE-CTTCTTHHHHHHHHHHHHHHTTT-TCEEEEEESTTCHHHHHHTTCCSSSEEEEEETTEEE
T ss_pred             CCcEEEEEE-CCCCCCccccchHHHHHHHhcCC-cceeceecccccHHHHHHhcccCCCEEEEEECCEEE
Confidence            468888777 69999999999988877666543 366777765543333444443455544554444433

>d1fb6a_ c.47.1.1 (A:) Thioredoxin {Spinach (Spinacia oleracea), thioredoxin M [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Spinach (Spinacia oleracea), thioredoxin M [TaxId: 3562]

Probab=95.30  E-value=0.02  Score=43.86  Aligned_cols=68  Identities=15%  Similarity=0.202  Sum_probs=42.9

Q ss_pred             CCCEEEEeecCCCCcchHHHHHHHHhccchhhhcCCeEEEEecCChhhHHhhhcCCCCCceeEeccchHH
Q 015842          229 ESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLHEYIESEVKDFWPRYWGGVVVYDQGMEF  298 (399)
Q Consensus       229 ~~pvVLvFyRg~gCP~Cr~el~~L~e~~pef~alGV~LVaIspE~~e~~ik~F~~~~l~f~VLsDp~r~l  298 (399)
                      ++|+||.|| ..||+.|+.....+.++..++.. .+.++.|-.+.-....+.|.=..+|--++...++.+
T Consensus        17 ~~~vlv~F~-a~wC~~C~~~~~~~~~l~~~~~~-~~~~~~v~~d~~~~l~~~~~V~~~Pt~~~~~~G~~v   84 (104)
T d1fb6a_          17 EVPVMVDFW-APWCGPCKLIAPVIDELAKEYSG-KIAVYKLNTDEAPGIATQYNIRSIPTVLFFKNGERK   84 (104)
T ss_dssp             SSCEEEEEE-CTTCHHHHHHHHHHHHHHHHTTT-TCEEEEEETTTCHHHHHHTTCCSSSEEEEEETTEEE
T ss_pred             CCcEEEEEE-cCccCCccccCchhHHHHHhhcC-ccceeEEecccchhhhhhcceeeeeEEEEEEcCeEE
Confidence            568888777 59999999999888887766644 245666665544433444443455544444434333

>d1z6na1 c.47.1.1 (A:1-166) Hypothetical protein PA1234 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Hypothetical protein PA1234
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=95.23  E-value=0.0071  Score=50.81  Aligned_cols=66  Identities=18%  Similarity=0.175  Sum_probs=41.7

Q ss_pred             CCCEEEEeecCCCCcchHHHHHHHHhccchhhhcCCeEEEEecCChhhHHhhhcC-CC--CCceeEeccch
Q 015842          229 ESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLHEYIESEVKDFWP-RY--WGGVVVYDQGM  296 (399)
Q Consensus       229 ~~pvVLvFyRg~gCP~Cr~el~~L~e~~pef~alGV~LVaIspE~~e~~ik~F~~-~~--l~f~VLsDp~r  296 (399)
                      +++++|+-|=..|||.|+.++-.|.+...+..  +..++.|.-+.-....+.|.. ..  .|..++.|.+.
T Consensus        53 ~~~~~~l~~~~tWC~~C~~~~P~l~~l~~~~~--~~~~~~i~~d~~~~~~~~~~~~~~~~~p~~~~~d~~~  121 (166)
T d1z6na1          53 ERRYRLLVAGEMWCPDCQINLAALDFAQRLQP--NIELAIISKGRAEDDLRQRLALERIAIPLVLVLDEEF  121 (166)
T ss_dssp             CSCEEEEEECCTTCHHHHHHHHHHHHHHHHCT--TEEEEEECHHHHHHHTTTTTTCSSCCSSEEEEECTTC
T ss_pred             cCCeEEEEEEeCcCccHHHHHHHHHHHHHHCC--CCcEEEEECccCHHHHHHHHHhccccccceeecCccc
Confidence            45666666679999999999999988765554  456666664433333555553 23  34445555543

>d1r26a_ c.47.1.1 (A:) Thioredoxin {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Trypanosoma brucei [TaxId: 5691]

Probab=95.16  E-value=0.0032  Score=50.21  Aligned_cols=74  Identities=9%  Similarity=0.031  Sum_probs=49.0

Q ss_pred             chhhccCCCEEEEeecCCCCcchHHHHHHHHhccchhhhcCCeEEEEecCChhhHHhhhcCCCCCceeEeccchHH
Q 015842          223 ALELWRESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLHEYIESEVKDFWPRYWGGVVVYDQGMEF  298 (399)
Q Consensus       223 LsdL~~~~pvVLvFyRg~gCP~Cr~el~~L~e~~pef~alGV~LVaIspE~~e~~ik~F~~~~l~f~VLsDp~r~l  298 (399)
                      +.+++++.+.||+.|-..||+.|+.....|.++..++.  ++.++-|-.+......+.|.=..+|.-++...+..+
T Consensus        19 ~~~~~~~~~~vvv~F~a~wC~~C~~~~p~l~~l~~~~~--~v~~~~vd~d~~~~l~~~~~V~~~Pt~~~~~~G~~v   92 (113)
T d1r26a_          19 FRNIMSEDILTVAWFTAVWCGPCKTIERPMEKIAYEFP--TVKFAKVDADNNSEIVSKCRVLQLPTFIIARSGKML   92 (113)
T ss_dssp             HHHHHHSSSCEEEEEECTTCHHHHHTHHHHHHHHHHCT--TSEEEEEETTTCHHHHHHTTCCSSSEEEEEETTEEE
T ss_pred             HHHHHcCCCeEEEEEECCCCccchhhceeccccccccc--cccccccccccchhhHHHccccCCCEEEEEECCEEE
Confidence            35556666667777779999999998877777666553  788888877655443444543556655554434433

>d1nw2a_ c.47.1.1 (A:) Thioredoxin {Alicyclobacillus acidocaldarius, formerly Bacillus acidocaldarius [TaxId: 405212]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Alicyclobacillus acidocaldarius, formerly Bacillus acidocaldarius [TaxId: 405212]

Probab=95.11  E-value=0.0053  Score=47.46  Aligned_cols=75  Identities=11%  Similarity=0.078  Sum_probs=49.1

Q ss_pred             hhhcc-CCCEEEEeecCCCCcchHHHHHHHHhccchhhhcCCeEEEEecCChhhHHhhhcCCCCCceeEeccchHHHH
Q 015842          224 LELWR-ESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLHEYIESEVKDFWPRYWGGVVVYDQGMEFFK  300 (399)
Q Consensus       224 sdL~~-~~pvVLvFyRg~gCP~Cr~el~~L~e~~pef~alGV~LVaIspE~~e~~ik~F~~~~l~f~VLsDp~r~lYk  300 (399)
                      .+..+ ++|+||.|| ..||+.|+.....+.++..++.. .+.++-|-.+........|.=..+|--++...++.+++
T Consensus        11 ~~~i~~~k~vvv~F~-a~wC~~C~~~~~~~~~l~~~~~~-~~~~~~vd~~~~~~~~~~~~V~~~Pt~~~~~~G~~~~~   86 (105)
T d1nw2a_          11 QQAIQGDKPVLVDFW-AAWCGPCRMMAPVLEEFAEAHAD-KVTVAKLNVDENPETTSQFGIMSIPTLILFKGGEPVKQ   86 (105)
T ss_dssp             HHHTTSSSCEEEEEE-CTTCHHHHHHHHHHHHHHHHHTT-TCEEEEEETTTCHHHHHHTTCCBSSEEEEEETTEEEEE
T ss_pred             HHHHhCCCcEEEEEE-CCCCCCcccccchhhhhhhhcCC-ceEEEEEECCCCcccHHHCCcceeeEEEEEECCEEEEE
Confidence            44444 467777766 79999999999999887766654 47888887766544445554345554444444554443

>d2b5ea1 c.47.1.2 (A:365-504) Protein disulfide isomerase, PDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.10  E-value=0.0083  Score=48.77  Aligned_cols=64  Identities=14%  Similarity=0.232  Sum_probs=38.6

Q ss_pred             CCCEEEEeecCCCCcchHHHHHHHHhccchhhhcCCeEEEEecCChhhHHhhhcCCCCCceeEec
Q 015842          229 ESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLHEYIESEVKDFWPRYWGGVVVYD  293 (399)
Q Consensus       229 ~~pvVLvFyRg~gCP~Cr~el~~L~e~~pef~alGV~LVaIspE~~e~~ik~F~~~~l~f~VLsD  293 (399)
                      +++++|.|| ..||+.|+.....+.++...+...+..+..+-.+........|.-..+|--+|..
T Consensus        30 ~k~vlV~F~-a~wC~~C~~~~p~~~~la~~~~~~~~~v~~~~~d~~~~~~~~~~v~~~Ptl~~f~   93 (140)
T d2b5ea1          30 KKDVLVLYY-APWCGHCKRLAPTYQELADTYANATSDVLIAKLDHTENDVRGVVIEGYPTIVLYP   93 (140)
T ss_dssp             TCCEEEEEE-CTTCHHHHHHHHHHHHHHHHHHHHCSSCEEEEEEGGGCCCSSCCCSSSSEEEEEC
T ss_pred             CCCEEEEEE-eccCcccchhHHHHHHHHHHHhccccceEEEeeeccchhccccccccCCeEEEEE
Confidence            356666555 8899999999999998877777666555544433222223333324445444443

>d1ep7a_ c.47.1.1 (A:) Thioredoxin {Chlamydomonas reinhardtii [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Chlamydomonas reinhardtii [TaxId: 3055]

Probab=94.86  E-value=0.031  Score=43.90  Aligned_cols=67  Identities=13%  Similarity=0.132  Sum_probs=43.9

Q ss_pred             CCCEEEEeecCCCCcchHHHHHHHHhccchhhhcCCeEEEEecCChhhHHhhhcCCCCCceeEeccchH
Q 015842          229 ESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLHEYIESEVKDFWPRYWGGVVVYDQGME  297 (399)
Q Consensus       229 ~~pvVLvFyRg~gCP~Cr~el~~L~e~~pef~alGV~LVaIspE~~e~~ik~F~~~~l~f~VLsDp~r~  297 (399)
                      ++|+||.|| ..||+.|+.....|.++..++.. .+.++-|-.+......+.|.-..+|--++...+..
T Consensus        24 ~k~vvv~f~-a~wC~~C~~~~p~~~~l~~~~~~-~v~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~G~~   90 (112)
T d1ep7a_          24 HKPIVVDFT-ATWCGPCKMIAPLFETLSNDYAG-KVIFLKVDVDAVAAVAEAAGITAMPTFHVYKDGVK   90 (112)
T ss_dssp             TCCEEEEEE-CTTCHHHHHHHHHHHHHHHHTTT-TSEEEEEETTTTHHHHHHHTCCBSSEEEEEETTEE
T ss_pred             CCeEEEEEE-cCCcCCCcccchhhhhhhhcccc-eEEEEEeeccccccccccccccCCCEEEEEECCEE
Confidence            456666655 88999999999999887776643 47788887765544445554355565444443433

>d1ow5a_ a.60.1.2 (A:) Serine/threonine-protein kinase ste11 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: SAM domain-like
superfamily: SAM/Pointed domain
family: SAM (sterile alpha motif) domain
domain: Serine/threonine-protein kinase ste11
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.86  E-value=0.0028  Score=45.66  Aligned_cols=50  Identities=20%  Similarity=0.327  Sum_probs=45.4

Q ss_pred             HhhhccchhhhhhhHHHHHcC-CChHHHhccCcccchhhhcccc-cccccccc
Q 015842           39 IRSYLHDRALMQYADIFEASG-KSLPELLNLSTGDLSSQFGMKR-GHMARFKD   89 (399)
Q Consensus        39 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~   89 (399)
                      ++.||+.-||=+|++.++..| .++..|..++..|| .+.|+++ ||..|.+.
T Consensus         3 V~~wL~~lgL~~Y~~~F~~~~~i~~~~l~~l~~~dL-~~lGI~~~ghr~ril~   54 (60)
T d1ow5a_           3 VQLFLEEIGCTQYLDSFIQCNLVTEEEIKYLDKDIL-IALGVNKIGDRLKILR   54 (60)
T ss_dssp             HHHHHHHHSCTHHHHHHHHHTCCCHHHHHHCCHHHH-HHHTCCCHHHHHHHHH
T ss_pred             HHHHHHHCcCHHHHHHHHHcCCCcHHHHHhCCHHHH-HHcCCCCHHHHHHHHH
Confidence            578999999999999999999 89999999999999 6799966 99988765

>d1a8la2 c.47.1.2 (A:120-226) Protein disulfide isomerase, PDI {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=94.55  E-value=0.0091  Score=46.01  Aligned_cols=60  Identities=10%  Similarity=-0.090  Sum_probs=35.8

Q ss_pred             CCCEEEEeecCCCCcchHHHHHHHHhccch---hhhcCCeEEEEecCChhhHHhhhcCCCCCc
Q 015842          229 ESPAVLLCIRRPGCIMCRAEAHQLYAKKPI---FDALGIQLFAVLHEYIESEVKDFWPRYWGG  288 (399)
Q Consensus       229 ~~pvVLvFyRg~gCP~Cr~el~~L~e~~pe---f~alGV~LVaIspE~~e~~ik~F~~~~l~f  288 (399)
                      ++|++|.+|-..|||.|+.....+.+...+   .....+.++.|-.+......+.|.=..+|-
T Consensus        14 ~~~v~i~~F~a~wC~~C~~~~p~~~~la~~~~~~~~~~v~~~~id~~~~~~l~~~~~V~~vPT   76 (107)
T d1a8la2          14 DQDVRILVFVTPTCPYCPLAVRMAHKFAIENTKAGKGKILGDMVEAIEYPEWADQYNVMAVPK   76 (107)
T ss_dssp             CSCEEEEEEECSSCTTHHHHHHHHHHHHHHHHHTTCCCEEEEEEEGGGCHHHHHHTTCCSSCE
T ss_pred             CCCeEEEEEEcCccccchhhChhHHhhhhhhhhccCCcEEEEEeccccccccccccccccceE
Confidence            467877766699999999998887765332   223345555554433222244444345563

>d1f9ma_ c.47.1.1 (A:) Thioredoxin {Spinach (Spinacia oleracea), thioredoxin F [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Spinach (Spinacia oleracea), thioredoxin F [TaxId: 3562]

Probab=94.44  E-value=0.043  Score=43.17  Aligned_cols=40  Identities=18%  Similarity=0.213  Sum_probs=28.7

Q ss_pred             CCCEEEEeecCCCCcchHHHHHHHHhccchhhhcCCeEEEEec
Q 015842          229 ESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLH  271 (399)
Q Consensus       229 ~~pvVLvFyRg~gCP~Cr~el~~L~e~~pef~alGV~LVaIsp  271 (399)
                      ++|+||.|| ..||+.|+.....|.++..++.  ++.++.|-.
T Consensus        25 ~k~vvv~f~-a~wC~~C~~~~p~~~~l~~~~~--~v~~~~vd~   64 (112)
T d1f9ma_          25 DKPVVLDMF-TQWCGPCKAMAPKYEKLAEEYL--DVIFLKLDC   64 (112)
T ss_dssp             TSCEEEEEE-CTTCHHHHHHHHHHHHHHHHCT--TSEEEEEEC
T ss_pred             CCEEEEEEE-cCCCcchHHHHHHHhhhccccc--cceeecccc
Confidence            456666665 7799999998888877766553  567766654

>d1xfla_ c.47.1.1 (A:) Thioredoxin {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=94.38  E-value=0.031  Score=43.97  Aligned_cols=64  Identities=14%  Similarity=0.142  Sum_probs=38.8

Q ss_pred             CCEEEEeecCCCCcchHHHHHHHHhccchhhhcCCeEEEEecCChhhHHhhhcCCCCCceeEeccc
Q 015842          230 SPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLHEYIESEVKDFWPRYWGGVVVYDQG  295 (399)
Q Consensus       230 ~pvVLvFyRg~gCP~Cr~el~~L~e~~pef~alGV~LVaIspE~~e~~ik~F~~~~l~f~VLsDp~  295 (399)
                      ++.||+.|-..||+.|+.....|.++...+.  ++.++-|-.+......+.|.=..+|--++...+
T Consensus        28 ~~~vlv~F~a~wC~~C~~~~p~~~~l~~~~~--~~~~~~vd~~~~~~l~~~~~V~~~Pt~~~~~~G   91 (114)
T d1xfla_          28 KTLVVVDFTASWCGPCRFIAPFFADLAKKLP--NVLFLKVDTDELKSVASDWAIQAMPTFMFLKEG   91 (114)
T ss_dssp             TCEEEEEEECTTCHHHHHHHHHHHHHHHHCS--SEEEEEEETTTSHHHHHHTTCCSSSEEEEEETT
T ss_pred             CCeEEEEEEcCCCCCccccccchhhhccccc--ccceeEEEeeeceeeccccceeeeEEEEEEECC
Confidence            4444454458999999998888877665553  566666765554443444533455544444333

>d1dbya_ c.47.1.1 (A:) Thioredoxin {Chlamydomonas reinhardtii [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Chlamydomonas reinhardtii [TaxId: 3055]

Probab=94.37  E-value=0.013  Score=45.29  Aligned_cols=70  Identities=13%  Similarity=0.156  Sum_probs=47.8

Q ss_pred             CCCEEEEeecCCCCcchHHHHHHHHhccchhhhcCCeEEEEecCChhhHHhhhcCCCCCceeEeccchHHHH
Q 015842          229 ESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLHEYIESEVKDFWPRYWGGVVVYDQGMEFFK  300 (399)
Q Consensus       229 ~~pvVLvFyRg~gCP~Cr~el~~L~e~~pef~alGV~LVaIspE~~e~~ik~F~~~~l~f~VLsDp~r~lYk  300 (399)
                      ++|+||.|| -.||+.|+.....+.++..+... .+.++.|-.+......+.|.-..+|--++.+.++.+++
T Consensus        19 ~kpvlv~F~-a~wC~~C~~~~p~~~~~~~~~~~-~~~~~~vd~d~~~~l~~~~~V~~~Pt~~~~~~G~~v~~   88 (107)
T d1dbya_          19 SVPVLVDFW-APWCGPCRIIAPVVDEIAGEYKD-KLKCVKLNTDESPNVASEYGIRSIPTIMVFKGGKKCET   88 (107)
T ss_dssp             SSCEEEEEE-CTTCHHHHHHHHHHHHHHHHTTT-TCEEEEEETTTCHHHHHHHTCCSSCEEEEESSSSEEEE
T ss_pred             CCcEEEEEE-CCCCCCccccChHHHHHHHhhcc-cceEEEEecccchhHHHHhcccceEEEEEEECCeEEEE
Confidence            457776666 57999999999888877655543 46777777665544455565467777677766665544

>d1ti3a_ c.47.1.1 (A:) Thioredoxin {European aspen (Populus tremula), thioredoxin H [TaxId: 113636]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: European aspen (Populus tremula), thioredoxin H [TaxId: 113636]

Probab=94.14  E-value=0.043  Score=42.93  Aligned_cols=69  Identities=9%  Similarity=0.112  Sum_probs=38.5

Q ss_pred             hhccCCCEEEEeecCCCCcchHHHHHHHHhccchhhhcCCeEEEEecCChhhHHhhhcCCCCCceeEeccc
Q 015842          225 ELWRESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLHEYIESEVKDFWPRYWGGVVVYDQG  295 (399)
Q Consensus       225 dL~~~~pvVLvFyRg~gCP~Cr~el~~L~e~~pef~alGV~LVaIspE~~e~~ik~F~~~~l~f~VLsDp~  295 (399)
                      +..+.++.||+.|...||+.|+.....|.++..++  .++.++-|-.+......+.|.=..+|--++..-+
T Consensus        21 ~~~~~~k~vvv~F~a~wC~~C~~~~p~~~~~~~~~--~~~~~~~vd~d~~~~l~~~~~I~~~Pt~~~~k~G   89 (113)
T d1ti3a_          21 KGKGSQKLIVVDFTASWCPPCKMIAPIFAELAKKF--PNVTFLKVDVDELKAVAEEWNVEAMPTFIFLKDG   89 (113)
T ss_dssp             HHTTSSSEEEEEEECSSCHHHHHHHHHHHHHHHHC--SSEEEEEEETTTCHHHHHHHHCSSTTEEEEEETT
T ss_pred             HHHcCCCEEEEEEEcCccccchhhhhhhhhhhccC--CCceEEeeeeeccccccccCeecccceEEEEECC
Confidence            33344455555555799999998877776654444  2456666655544333444433455544443333

>d1gh2a_ c.47.1.1 (A:) Thioredoxin-like protein, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin-like protein, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.10  E-value=0.032  Score=43.67  Aligned_cols=57  Identities=11%  Similarity=-0.007  Sum_probs=36.5

Q ss_pred             CCEEEEeecCCCCcchHHHHHHHHhccchhhhcCCeEEEEecCChhhHHhhhcCCCCCc
Q 015842          230 SPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLHEYIESEVKDFWPRYWGG  288 (399)
Q Consensus       230 ~pvVLvFyRg~gCP~Cr~el~~L~e~~pef~alGV~LVaIspE~~e~~ik~F~~~~l~f  288 (399)
                      .++||+.|-..||+.|+.....|.++..++.  ++.++-|-.+......+.|.-..+|.
T Consensus        21 ~klvvv~F~a~wC~~Ck~~~p~~~~la~~~~--~~~f~~vd~d~~~~l~~~~~v~~~Pt   77 (107)
T d1gh2a_          21 SRLAVVKFTMRGCGPCLRIAPAFSSMSNKYP--QAVFLEVDVHQCQGTAATNNISATPT   77 (107)
T ss_dssp             TSCEEEEEECSSCHHHHHHHHHHHHHHHHCT--TSEEEEEETTTSHHHHHHTTCCSSSE
T ss_pred             CCEEEEEEECCCCCCccccchhhhccccccc--cccccccccccchhhhhhcCceeceE
Confidence            4556666778999999999988887766553  57776665554433234443234443

>d1meka_ c.47.1.2 (A:) Protein disulfide isomerase, PDI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.88  E-value=0.013  Score=46.00  Aligned_cols=70  Identities=19%  Similarity=0.163  Sum_probs=39.9

Q ss_pred             chhhccCCCEEEEeecCCCCcchHHHHHHHHhccchhhhcC--CeEEEEecCChhhHHhhhcCCCCCceeEe
Q 015842          223 ALELWRESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALG--IQLFAVLHEYIESEVKDFWPRYWGGVVVY  292 (399)
Q Consensus       223 LsdL~~~~pvVLvFyRg~gCP~Cr~el~~L~e~~pef~alG--V~LVaIspE~~e~~ik~F~~~~l~f~VLs  292 (399)
                      +.+++++.+.||+.|-..||+.|+.....+.+...++...+  +.++.|-.+.-......|.-..+|--++.
T Consensus        17 f~~~l~~~k~vlV~Fya~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~   88 (120)
T d1meka_          17 FAEALAAHKYLLVEFYAPWCGHCKALAPEYAKAAGKLKAEGSEIRLAKVDATEESDLAQQYGVRGYPTIKFF   88 (120)
T ss_dssp             HHHHHHHCSEEEEEEECSSCSTTSTTHHHHHHHHHTTTTTCCCCBCEEEETTTCCSSHHHHTCCSSSEEEEE
T ss_pred             HHHHHhcCCcEEEEEECCCcCCccccchhhhhhcccccccccceeeeccccccchhHHHHhCCccCCeEEEE
Confidence            34555544444444447999999988777777666665544  45555655443332344443455543333

>d1ucva_ a.60.1.2 (A:) Ephrin type-A receptor 8, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: SAM domain-like
superfamily: SAM/Pointed domain
family: SAM (sterile alpha motif) domain
domain: Ephrin type-A receptor 8, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.70  E-value=0.0078  Score=45.68  Aligned_cols=51  Identities=25%  Similarity=0.483  Sum_probs=45.2

Q ss_pred             HhhhccchhhhhhhHHHHHcCCC-hHHHhccCcccchhhhccc-cccccccccc
Q 015842           39 IRSYLHDRALMQYADIFEASGKS-LPELLNLSTGDLSSQFGMK-RGHMARFKDR   90 (399)
Q Consensus        39 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~   90 (399)
                      +..||..-+|-||++.++..|.. +..|+.++..||- +.||. .||..|++..
T Consensus        10 V~~WL~~lgL~qY~~~F~~~gi~~~~~L~~lt~~dL~-~lGI~~~ghr~kIl~~   62 (81)
T d1ucva_          10 VGDWLDSIRMGRYRDHFAAGGYSSLGMVLRMNAQDVR-ALGITLMGHQKKILGS   62 (81)
T ss_dssp             HHHHHHHTTCGGGHHHHHHTTCCBHHHHTTCCHHHHH-HHTCCCHHHHHHHHHH
T ss_pred             HHHHHHHCccHHHHHHHHHcCCchHHHHHhCCHHHHH-HcCCCCHHHHHHHHHH
Confidence            56799999999999999999997 6889999999995 89995 5999998863

>d2trxa_ c.47.1.1 (A:) Thioredoxin {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Escherichia coli [TaxId: 562]

Probab=93.62  E-value=0.019  Score=44.34  Aligned_cols=68  Identities=9%  Similarity=0.067  Sum_probs=38.7

Q ss_pred             CCCEEEEeecCCCCcchHHHHHHHHhccchhhhcCCeEEEEecCChhhHHhhhcCCCCCceeEeccchHH
Q 015842          229 ESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLHEYIESEVKDFWPRYWGGVVVYDQGMEF  298 (399)
Q Consensus       229 ~~pvVLvFyRg~gCP~Cr~el~~L~e~~pef~alGV~LVaIspE~~e~~ik~F~~~~l~f~VLsDp~r~l  298 (399)
                      ++++||.|| -.||+.|+.....+.+...++.. .+.++.|-.+........|.-..+|--++...+..+
T Consensus        20 ~~~v~v~F~-a~wC~~C~~~~~~~~~~a~~~~~-~~~~~~vd~d~~~~l~~~~~v~~~PT~~~~~~G~~v   87 (108)
T d2trxa_          20 DGAILVDFW-AEWCGPCKMIAPILDEIADEYQG-KLTVAKLNIDQNPGTAPKYGIRGIPTLLLFKNGEVA   87 (108)
T ss_dssp             SSEEEEEEE-CTTCHHHHHHHHHHHHHHHHTTT-TEEEEEEETTTCTTHHHHTTCCSSSEEEEEETTEEE
T ss_pred             CCcEEEEEE-CCCCCCccccCcHHHHHHHHhhc-ceeeeeccccchhhHHHHhCCCcEEEEEEEECCEEE
Confidence            355665565 89999999888888765544422 345555554433333445543556644444444333

>d1b4fa_ a.60.1.2 (A:) EphB2 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: SAM domain-like
superfamily: SAM/Pointed domain
family: SAM (sterile alpha motif) domain
domain: EphB2 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.60  E-value=0.009  Score=44.41  Aligned_cols=50  Identities=18%  Similarity=0.392  Sum_probs=44.6

Q ss_pred             HhhhccchhhhhhhHHHHHcCCC-hHHHhccCcccchhhhcc-cccccccccc
Q 015842           39 IRSYLHDRALMQYADIFEASGKS-LPELLNLSTGDLSSQFGM-KRGHMARFKD   89 (399)
Q Consensus        39 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~~~~   89 (399)
                      +..||+.-||-||++.++..|.+ +..|..++..+| .+.|+ +.||..|++.
T Consensus         9 V~~WL~~lgL~~Y~~~F~~~~idg~~~l~~l~~~~L-~~lGI~~~ghr~ril~   60 (74)
T d1b4fa_           9 VDEWLEAIKMGQYKESFANAGFTSFDVVSQMMMEDI-LRVGVTLAGHQKKILN   60 (74)
T ss_dssp             HHHHHHHTTCGGGHHHHHHTTCCSHHHHTTCCHHHH-HHTTCCCHHHHHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHcCcCcHHHHHhCCHHHH-HHcCCCChhHHHHHHH
Confidence            67899999999999999999997 788888999888 78999 5699998874

>d2f3na1 a.60.1.2 (A:2-65) Sh3 and multiple ankyrin repeat domains 3 (Shank3) {Rat(Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: SAM domain-like
superfamily: SAM/Pointed domain
family: SAM (sterile alpha motif) domain
domain: Sh3 and multiple ankyrin repeat domains 3 (Shank3)
species: Rat(Rattus norvegicus) [TaxId: 10116]

Probab=93.60  E-value=0.0095  Score=42.79  Aligned_cols=51  Identities=22%  Similarity=0.355  Sum_probs=45.6

Q ss_pred             HHhhhccchhhhhhhHHHHHcCCChHHHhccCcccchhhhcc-cccccccccc
Q 015842           38 EIRSYLHDRALMQYADIFEASGKSLPELLNLSTGDLSSQFGM-KRGHMARFKD   89 (399)
Q Consensus        38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~   89 (399)
                      ++-.||..-||=||++.++..+++...|+.++..|| .+.|+ +.||-.+++.
T Consensus         8 ~V~~wL~~~gl~~y~~~F~~~~i~g~~L~~l~~~dL-~~lGi~~~g~r~~il~   59 (64)
T d2f3na1           8 DVGDWLESIHLGEHRDRFEDHEIEGAHLPALTKEDF-VELGVTRVGHRENIER   59 (64)
T ss_dssp             HHHHHHHHTTCGGGHHHHHHTTCCGGGGGGCCHHHH-HHTTCCCHHHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHCCCcHHHhhcCCHHHH-HHcCCCCHHHHHHHHH
Confidence            567899999999999999999999999999999999 57999 5699887764

>d1woua_ c.47.1.16 (A:) Putative 42-9-9 protein (thioredoxin containing protein Txnl5) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Txnl5-like
domain: Putative 42-9-9 protein (thioredoxin containing protein Txnl5)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.56  E-value=0.039  Score=44.07  Aligned_cols=62  Identities=11%  Similarity=-0.008  Sum_probs=40.7

Q ss_pred             CCCEEEEeecC------CCCcchHHHHHHHHhccchhhhcCCeEEEEecCChhhHHhhhcCCCCCceeEeccchHHHHHh
Q 015842          229 ESPAVLLCIRR------PGCIMCRAEAHQLYAKKPIFDALGIQLFAVLHEYIESEVKDFWPRYWGGVVVYDQGMEFFKAL  302 (399)
Q Consensus       229 ~~pvVLvFyRg------~gCP~Cr~el~~L~e~~pef~alGV~LVaIspE~~e~~ik~F~~~~l~f~VLsDp~r~lYkaL  302 (399)
                      +++++|.|+--      .||+-|+...-.+.+....+.. ++.++.|--+..              +.+.|+...+.+.|
T Consensus        21 gk~v~v~F~a~~~~~g~sWC~pCk~~~P~~~~l~~~~~~-~~~~~~vdv~~~--------------~~~~d~~~~l~~~~   85 (119)
T d1woua_          21 GKTIFAYFTGSKDAGGKSWCPDCVQAEPVVREGLKHISE-GCVFIYCQVGEK--------------PYWKDPNNDFRKNL   85 (119)
T ss_dssp             TSEEEEEEECCBCTTCCBSCHHHHHHHHHHHHHGGGCCT-TEEEEEEECCCH--------------HHHHCTTCHHHHHH
T ss_pred             CCEEEEEEEecCCCCCCCCChhHHHHHHHHHHHHHhcCC-ceEEEEEECCCC--------------cccchhhhhHHHhC
Confidence            34555666543      5999999999999887666543 466666654321              33455667777777


Q ss_pred             CCC
Q 015842          303 GGG  305 (399)
Q Consensus       303 Gl~  305 (399)
                      |+.
T Consensus        86 ~V~   88 (119)
T d1woua_          86 KVT   88 (119)
T ss_dssp             CCC
T ss_pred             CeE
Confidence            775

>d1x40a1 a.60.1.2 (A:8-85) Centaurin-delta 1 (Arap2) {Human(Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: SAM domain-like
superfamily: SAM/Pointed domain
family: SAM (sterile alpha motif) domain
domain: Centaurin-delta 1 (Arap2)
species: Human(Homo sapiens) [TaxId: 9606]

Probab=93.47  E-value=0.0076  Score=45.53  Aligned_cols=51  Identities=25%  Similarity=0.428  Sum_probs=45.8

Q ss_pred             HHhhhccchhhhhhhHHHHHcCC-ChHHHhccCcccchhhhcccc-cccccccc
Q 015842           38 EIRSYLHDRALMQYADIFEASGK-SLPELLNLSTGDLSSQFGMKR-GHMARFKD   89 (399)
Q Consensus        38 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~   89 (399)
                      ++..||..-||-+|++.++..|. ++..|..++..|| .+-|++. ||..|.+.
T Consensus        10 dV~~WL~~lgL~~Y~~~F~~~g~~~~~~l~~l~~~dL-~~lGI~~~ghr~kil~   62 (78)
T d1x40a1          10 DIKDFLMSINLEQYLLHFHESGFTTVKDCAAINDSLL-QKIGISPTGHRRRILK   62 (78)
T ss_dssp             BHHHHHHTTTCGGGHHHHHHHTCCBSGGGGGCCHHHH-HHHTCCCHHHHHHHHH
T ss_pred             hHHHHHHHCchHHHHHHHHHcCCCCHHHHHHCCHHHH-HHcCCCCHHHHHHHHH
Confidence            47889999999999999999995 6999999999999 5899966 99988764

>d1hyua4 c.47.1.2 (A:103-198) Alkyl hydroperoxide reductase subunit F (AhpF), N-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Alkyl hydroperoxide reductase subunit F (AhpF), N-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=93.41  E-value=0.082  Score=40.39  Aligned_cols=58  Identities=10%  Similarity=0.001  Sum_probs=35.8

Q ss_pred             CCCEEEEeecCCCCcchHHHHHHHHhccchhhhcCCeEEEEecCChhhHHhhhcCCCCCc
Q 015842          229 ESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLHEYIESEVKDFWPRYWGG  288 (399)
Q Consensus       229 ~~pvVLvFyRg~gCP~Cr~el~~L~e~~pef~alGV~LVaIspE~~e~~ik~F~~~~l~f  288 (399)
                      ++++.|..|-..|||+|+.....|.+...+  .-.+.++.|-.+.-......|.=..+|-
T Consensus        14 ~~~~~i~~F~s~~C~~C~~~~p~~~~~a~~--~~~i~~~~vd~~~~~~l~~~~~I~~vPt   71 (96)
T d1hyua4          14 DGDFEFETYYSLSCHNCPDVVQALNLMAVL--NPRIKHTAIDGGTFQNEITERNVMGVPA   71 (96)
T ss_dssp             CSCEEEEEEECTTCSSHHHHHHHHHHHHHH--CTTEEEEEEETTTCHHHHHHTTCCSSSE
T ss_pred             CCCeEEEEEECCCCcchHHHHHHHHHHHHh--CCceEEEEEecccchHHHhhcccccccE
Confidence            466666656688999999888877765322  2246777776655444345453344553

>d1zmaa1 c.47.1.1 (A:1-115) Bacterocin transport accessory protein Bta {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Bacterocin transport accessory protein Bta
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=93.36  E-value=0.026  Score=44.27  Aligned_cols=45  Identities=20%  Similarity=0.213  Sum_probs=30.2

Q ss_pred             chhhccC-CCEEEEeecCCCCcchHHHHHHHHhccchhhhcCCeEEEEec
Q 015842          223 ALELWRE-SPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLH  271 (399)
Q Consensus       223 LsdL~~~-~pvVLvFyRg~gCP~Cr~el~~L~e~~pef~alGV~LVaIsp  271 (399)
                      +.++.++ .+++|.|++ .|||.|+.....|.+...+.   +.++..|.-
T Consensus        19 ~~~~i~~~~~~~v~f~~-~~C~~C~~~~p~l~~~~~~~---~~~v~~v~~   64 (115)
T d1zmaa1          19 AQEALDKKETATFFIGR-KTCPYCRKFAGTLSGVVAET---KAHIYFINS   64 (115)
T ss_dssp             HHHHHHTTCCEEEEEEC-TTCHHHHHHHHHHHHHHHHH---CCCCEEEET
T ss_pred             HHHHHhcCCCEEEEEcC-CCCccHHHHHHHHHHHHHHh---hhhhhhhee
Confidence            4455554 466666665 89999999999997765544   445555543

>d1syra_ c.47.1.1 (A:) Thioredoxin {Malarial parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Malarial parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=93.00  E-value=0.078  Score=40.51  Aligned_cols=67  Identities=9%  Similarity=0.003  Sum_probs=40.6

Q ss_pred             chhhccC-CCEEEEeecCCCCcchHHHHHHHHhccchhhhcCCeEEEEecCChhhHHhhhcCCCCCceeEe
Q 015842          223 ALELWRE-SPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLHEYIESEVKDFWPRYWGGVVVY  292 (399)
Q Consensus       223 LsdL~~~-~pvVLvFyRg~gCP~Cr~el~~L~e~~pef~alGV~LVaIspE~~e~~ik~F~~~~l~f~VLs  292 (399)
                      +.++.++ +++||.|| ..||+.|+.....|.++..++.  ++.++-|-.+......+.|.=..+|--++.
T Consensus        11 f~~~i~~~~~vvv~F~-a~wC~~C~~~~~~~~~l~~~~~--~~~~~~vd~d~~~~~~~~~~V~~~Pt~i~~   78 (103)
T d1syra_          11 FDSIISQNELVIVDFF-AEWCGPCKRIAPFYEECSKTYT--KMVFIKVDVDEVSEVTEKENITSMPTFKVY   78 (103)
T ss_dssp             HHHHHHHCSEEEEEEE-CTTCHHHHHHHHHHHHHHHHCT--TSEEEEEETTTTHHHHHHTTCCSSSEEEEE
T ss_pred             HHHHHhCCCcEEEEEe-CCcccCcccccccchhhhhccc--ceEEEeeccccCcceeeeeeeecceEEEEE
Confidence            3444444 45666666 6899999998888877766553  566766666554443444433455543333

>d1xwaa_ c.47.1.1 (A:) Thioredoxin {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=92.76  E-value=0.11  Score=40.09  Aligned_cols=57  Identities=14%  Similarity=0.113  Sum_probs=35.8

Q ss_pred             CCEEEEeecCCCCcchHHHHHHHHhccchhhhcCCeEEEEecCChhhHHhhhcCCCCC
Q 015842          230 SPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLHEYIESEVKDFWPRYWG  287 (399)
Q Consensus       230 ~pvVLvFyRg~gCP~Cr~el~~L~e~~pef~alGV~LVaIspE~~e~~ik~F~~~~l~  287 (399)
                      ++.||+.|-..||+.|+.....+.++..++.. .+.++.|-.+......+.|.-..+|
T Consensus        25 ~k~vlv~f~a~wC~~C~~~~p~~~~l~~~~~~-~~~~~~i~~d~~~~l~~~~~V~~~P   81 (111)
T d1xwaa_          25 GKLVVLDFFATWCGPCKMISPKLVELSTQFAD-NVVVLKVDVDECEDIAMEYNISSMP   81 (111)
T ss_dssp             TSEEEEEEECTTCHHHHHHHHHHHHHHHHTTT-TEEEEEEETTTCHHHHHHTTCCSSS
T ss_pred             CCEEEEEEECCcccCccccchhHHHHhhhccc-ceEEEEEEeecCcchhhcCCCcccc
Confidence            34444545589999999999999887766643 2566666655544334444323444

>d1b0xa_ a.60.1.2 (A:) EphA4 receptor tyrosine kinases {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: SAM domain-like
superfamily: SAM/Pointed domain
family: SAM (sterile alpha motif) domain
domain: EphA4 receptor tyrosine kinases
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.59  E-value=0.017  Score=42.62  Aligned_cols=50  Identities=24%  Similarity=0.494  Sum_probs=43.6

Q ss_pred             HhhhccchhhhhhhHHHHHcCCC-hHHHhccCcccchhhhccc-ccccccccc
Q 015842           39 IRSYLHDRALMQYADIFEASGKS-LPELLNLSTGDLSSQFGMK-RGHMARFKD   89 (399)
Q Consensus        39 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~~   89 (399)
                      +..||+.-+|-||++.+++.|.+ +..|..++..|| .+.|+. .||..|.+.
T Consensus         7 V~~WL~~lgL~~Y~~~F~~~~~~~~~~l~~l~~~dL-~~lGI~~~ghr~ki~~   58 (72)
T d1b0xa_           7 VGDWLQAIKMDRYKDNFTAAGYTTLEAVVHMSQDDL-ARIGITAITHQNKILS   58 (72)
T ss_dssp             HHHHHHHTTCGGGHHHHHHTTCCSHHHHTTCCHHHH-HHHTCCCHHHHHHHHH
T ss_pred             HHHHHHHCCcHHHHHHHHHcCCCcHHHHHHCCHHHH-HHcCCCCHHHHHHHHH
Confidence            56799999999999999999996 778889999999 579995 599988763

>d2djja1 c.47.1.2 (A:6-121) Protein disulfide isomerase, PDI {Fungi (Humicola insolens) [TaxId: 34413]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Fungi (Humicola insolens) [TaxId: 34413]

Probab=91.11  E-value=0.076  Score=40.93  Aligned_cols=33  Identities=15%  Similarity=0.249  Sum_probs=25.0

Q ss_pred             CCCEEEEeecCCCCcchHHHHHHHHhccchhhhc
Q 015842          229 ESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDAL  262 (399)
Q Consensus       229 ~~pvVLvFyRg~gCP~Cr~el~~L~e~~pef~al  262 (399)
                      +++++|.|| -.||+.|+.....+.++...+...
T Consensus        20 ~k~vlV~fy-a~wC~~Ck~~~p~~~~la~~~~~~   52 (116)
T d2djja1          20 TKDVLIEFY-APWCGHCKALAPKYEELGALYAKS   52 (116)
T ss_dssp             TSCEEEEEE-CSSCTTHHHHHHHHHHHHHHHTTS
T ss_pred             CCCEEEEEE-ecccccccccchHHHHHHHHHhcc
Confidence            457777766 599999999888888776666543

>d1v38a_ a.60.1.2 (A:) Sam-domain protein samsn-1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: SAM domain-like
superfamily: SAM/Pointed domain
family: SAM (sterile alpha motif) domain
domain: Sam-domain protein samsn-1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=91.10  E-value=0.025  Score=42.31  Aligned_cols=51  Identities=20%  Similarity=0.365  Sum_probs=44.5

Q ss_pred             HHhhhccchhhhhhhHHHHHcCCC-hHHHhccCcccchhhhcc-cccccccccc
Q 015842           38 EIRSYLHDRALMQYADIFEASGKS-LPELLNLSTGDLSSQFGM-KRGHMARFKD   89 (399)
Q Consensus        38 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~~~~   89 (399)
                      .++.||..-||=||++.++..|.. +..|..++..|| .+.|+ +.||..|.+.
T Consensus        14 ~V~~WL~~lgL~~Y~~~F~~~g~~~~~~l~~l~~~dL-~~lGI~~~~hr~kil~   66 (78)
T d1v38a_          14 TIQEFLERIHLQEYTSTLLLNGYETLDDLKDIKESHL-IELNIADPEDRARLLS   66 (78)
T ss_dssp             BHHHHHHTTTCGGGHHHHHHHTCCBHHHHTTCCHHHH-HHTTTCCHHHHHHHHH
T ss_pred             HHHHHHHHCCHHHHHHHHHHcCccchHHHccCCHHHH-hHcCCCCHHHHHHHHH
Confidence            478899999999999999999975 777888999999 67999 5799988764

>d2dlxa1 c.47.1.24 (A:1-147) UBX domain-containing protein 7 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: UAS domain
domain: UBX domain-containing protein 7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.00  E-value=0.067  Score=44.40  Aligned_cols=65  Identities=12%  Similarity=0.151  Sum_probs=37.9

Q ss_pred             CCCEEEEeecCCCCcchHHHHHHHHhc---cchhhhcCCeEEEEecCChhh--HHhhhcCCCCCceeEeccc
Q 015842          229 ESPAVLLCIRRPGCIMCRAEAHQLYAK---KPIFDALGIQLFAVLHEYIES--EVKDFWPRYWGGVVVYDQG  295 (399)
Q Consensus       229 ~~pvVLvFyRg~gCP~Cr~el~~L~e~---~pef~alGV~LVaIspE~~e~--~ik~F~~~~l~f~VLsDp~  295 (399)
                      +++++|.|+ ..||+.|+..-++.-..   ...+++ +.-+|.|.-++.+.  ..+.|.-..+|.-++.||.
T Consensus        42 ~K~llV~~~-~~~C~~C~~m~~~v~~d~~V~~~l~~-~fV~~~v~~~~~e~~~~~~~y~v~~~Pti~~idp~  111 (147)
T d2dlxa1          42 NKWLMINIQ-NVQDFACQCLNRDVWSNEAVKNIIRE-HFIFWQVYHDSEEGQRYIQFYKLGDFPYVSILDPR  111 (147)
T ss_dssp             TCEEEEEEE-CSCTTTHHHHHHHTTTCHHHHHHHHH-TEEEEEEESSSHHHHHHHHHHTCCSSSEEEEECTT
T ss_pred             CCcEEEEEe-cCCCCchHHHHHhccCCHHHHHHHhh-heeEeeecccchhhhhhhhheecCceeEEEEEeCC
Confidence            556665555 99999999877765432   222322 33344455444432  1233333568888999983

>d2es7a1 c.47.1.20 (A:7-125) Hydrogenase-1 operon protein HyaE {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: HyaE-like
domain: Hydrogenase-1 operon protein HyaE
species: Salmonella typhimurium [TaxId: 90371]

Probab=90.71  E-value=0.047  Score=43.73  Aligned_cols=74  Identities=15%  Similarity=0.015  Sum_probs=40.7

Q ss_pred             CEEEEeecCCCCcchHHHHHHHHhccchhhhcCCeEEEEecCChhhHHhhhcCCCCCceeEeccchHHHHHhCC
Q 015842          231 PAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLHEYIESEVKDFWPRYWGGVVVYDQGMEFFKALGG  304 (399)
Q Consensus       231 pvVLvFyRg~gCP~Cr~el~~L~e~~pef~alGV~LVaIspE~~e~~ik~F~~~~l~f~VLsDp~r~lYkaLGl  304 (399)
                      .+|++.+--.|||-|+..+.-|.++..++....+.++.|-.+......+.|.=+.+|--++...+..+.+.-|.
T Consensus        31 ~~vll~f~a~wCp~C~~~~pvl~eL~~~~~~~~~~~~~Vd~d~~~~l~~~~~V~~~Pt~~~~~~G~~v~~~~G~  104 (119)
T d2es7a1          31 GVILLSSDPRRTPEVSDNPVMIAELLREFPQFDWQVAVADLEQSEAIGDRFNVRRFPATLVFTDGKLRGALSGI  104 (119)
T ss_dssp             EEEEECCCSCC----CCHHHHHHHHHHTCTTSCCEEEEECHHHHHHHHHTTTCCSSSEEEEESCC----CEESC
T ss_pred             cEEEEeecCCCCccHHHHHHHHHHHHHhcCCCceEEEEEECCCCHHHHHhcCcCcceEEEEEEcCeEEEEeeCC
Confidence            35555556679999999999999988888665666666654443332333432556655555666666664454

>d1wjka_ c.47.1.1 (A:) Thioredoxin-like structure containing protein C330018D20Rik {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin-like structure containing protein C330018D20Rik
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=90.59  E-value=0.092  Score=40.65  Aligned_cols=48  Identities=17%  Similarity=0.230  Sum_probs=30.6

Q ss_pred             CCEEEEeecCCCCcchHHHHHHHHhccchhhhcCCeEEEEecCChhhHHhhh
Q 015842          230 SPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLHEYIESEVKDF  281 (399)
Q Consensus       230 ~pvVLvFyRg~gCP~Cr~el~~L~e~~pef~alGV~LVaIspE~~e~~ik~F  281 (399)
                      -|+ |++|-..|||+|......|.++..++.   .++|-|-.+.-....+.|
T Consensus        16 ~p~-i~lft~~~C~~C~~a~~~L~~~~~~~~---~~~v~vd~~~~~~l~~~y   63 (100)
T d1wjka_          16 LPV-LTLFTKAPCPLCDEAKEVLQPYKDRFI---LQEVDITLPENSTWYERY   63 (100)
T ss_dssp             CCE-EEEEECSSCHHHHHHHHHTSTTSSSSE---EEEEETTSSTTHHHHHHS
T ss_pred             CCE-EEEEECCCCCChHHHHHHHHHhhhhcc---eEEEecccccCHHHHHHh
Confidence            464 566888999999988888888776663   344444333333333444

>d2ifqa1 c.47.1.1 (A:1-105) Thioredoxin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.30  E-value=0.27  Score=37.52  Aligned_cols=61  Identities=7%  Similarity=0.070  Sum_probs=36.7

Q ss_pred             CCEEEEeecCCCCcchHHHHHHHHhccchhhhcCCeEEEEecCChhhHHhhhcCCCCCceeEe
Q 015842          230 SPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLHEYIESEVKDFWPRYWGGVVVY  292 (399)
Q Consensus       230 ~pvVLvFyRg~gCP~Cr~el~~L~e~~pef~alGV~LVaIspE~~e~~ik~F~~~~l~f~VLs  292 (399)
                      ++.||+.|...||+.|+.....|.++..++.  ++.++-|-.+........|.-..+|--++.
T Consensus        20 ~k~vvv~F~a~wC~~C~~~~p~~~~l~~~~~--~~~~~~vd~d~~~~~~~~~~V~~~Pt~~~~   80 (105)
T d2ifqa1          20 DKLVVVDFSATWCGPCKMIKPFFHSLSEKYS--NVIFLEVDVDDCQDVASECEVKCMPTFQFF   80 (105)
T ss_dssp             TSCEEEEEECTTCHHHHHHHHHHHHHHHHCT--TSEEEEEETTTCHHHHHHTTCCBSSEEEEE
T ss_pred             CCEEEEEEEcCCccchhhhhhhhhhhccccc--cceeeecccccCHhHHHHcCceEEEEEEEE
Confidence            3456666778999999999998887765553  355555554443332344432444444333

>d1dxsa_ a.60.1.2 (A:) C-terminal domain of p73 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: SAM domain-like
superfamily: SAM/Pointed domain
family: SAM (sterile alpha motif) domain
domain: C-terminal domain of p73
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.28  E-value=0.052  Score=38.64  Aligned_cols=49  Identities=18%  Similarity=0.247  Sum_probs=43.3

Q ss_pred             HhhhccchhhhhhhHHHHHcCCC-hHHHhccCcccchhhhccccccccccc
Q 015842           39 IRSYLHDRALMQYADIFEASGKS-LPELLNLSTGDLSSQFGMKRGHMARFK   88 (399)
Q Consensus        39 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~   88 (399)
                      +..||+.-||-||+|.+.+.|.+ +..+..++..||.. .|++-||--+.+
T Consensus         2 v~~wL~~lgL~~Y~~~F~~~G~~~l~~l~~lt~eDL~~-lGI~~~hr~kil   51 (57)
T d1dxsa_           2 LVSFLTGLGCPNCIEYFTSQGLQSIYHLQNLTIEDLGA-LKIPEQYRMTIW   51 (57)
T ss_dssp             HHHHHHHTTCTTSHHHHHTTTCCCHHHHHTCCHHHHHH-TTCCTTTHHHHH
T ss_pred             HHHHHHHCCcHHHHHHHHHccCCcHHHHHHhhHHHHHH-cCCCHHHHHHHH
Confidence            56899999999999999999995 99999999999975 899999965544

>d1nhoa_ c.47.1.1 (A:) MTH807, thioredoxin/glutaredoxin-like protein {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: MTH807, thioredoxin/glutaredoxin-like protein
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=89.76  E-value=0.12  Score=38.21  Aligned_cols=60  Identities=10%  Similarity=0.089  Sum_probs=38.3

Q ss_pred             EEEeecCCCCcchHHHHHHHHhccchhhhcCCeEEEEecCChhhHHhhhcCCCCCceeEecc
Q 015842          233 VLLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLHEYIESEVKDFWPRYWGGVVVYDQ  294 (399)
Q Consensus       233 VLvFyRg~gCP~Cr~el~~L~e~~pef~alGV~LVaIspE~~e~~ik~F~~~~l~f~VLsDp  294 (399)
                      .|..|-..||+.|+.....+.++..++.. .+.++.|-.+.-....+.|.=.++|- ++.|.
T Consensus         4 ~v~~F~a~wC~~C~~~~p~~~~l~~~~~~-~v~~~~vd~d~~~~l~~~~~V~~~Pt-~~~~~   63 (85)
T d1nhoa_           4 NIEVFTSPTCPYCPMAIEVVDEAKKEFGD-KIDVEKIDIMVDREKAIEYGLMAVPA-IAING   63 (85)
T ss_dssp             CEEEESCSSSCCSTTHHHHHHHHHHHHCS-SCCEEEECTTTCGGGGGGTCSSCSSE-EEETT
T ss_pred             EEEEEECCCCcchHHHHHHHhhhcccccc-cccccccccccchhhHHhcCceEeCE-EEECC
Confidence            34557789999999999988887776643 47777776544333234443245563 44443

>d1pk3a1 a.60.1.2 (A:17-79) Polycomb protein Scm {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All alpha proteins
fold: SAM domain-like
superfamily: SAM/Pointed domain
family: SAM (sterile alpha motif) domain
domain: Polycomb protein Scm
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=88.58  E-value=0.071  Score=38.00  Aligned_cols=51  Identities=22%  Similarity=0.357  Sum_probs=44.5

Q ss_pred             Hhhhcc--chhhhhhhHHHHHcCCChHHHhccCcccchhhhcccccccccccc
Q 015842           39 IRSYLH--DRALMQYADIFEASGKSLPELLNLSTGDLSSQFGMKRGHMARFKD   89 (399)
Q Consensus        39 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   89 (399)
                      .-.||-  +.++-+|++.+....++-..|+.++..+|.+..+||-||.-+.+.
T Consensus         6 V~~wL~~~~~~~~~y~~~F~~~~IdG~~Ll~Lt~edL~~~~~~~~G~r~ki~~   58 (63)
T d1pk3a1           6 VIQYIESNDNSLAVHGDLFRKHEIDGKALLRLNSEMMMKYMGLKLGPALKICN   58 (63)
T ss_dssp             HHHHHHHHCGGGGGGHHHHHHTTCCHHHHTTCCHHHHHHHHCCCHHHHHHHHH
T ss_pred             HHHHHHHccccHHHHHHHHHHhCcCHHHHHhcCHHHHHHhcCCCchHHHHHHH
Confidence            445774  358999999999999999999999999999999999999877653

>d1qgva_ c.47.1.8 (A:) spliceosomal protein U5-15Kd {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: spliceosomal protein U5-15Kd
domain: spliceosomal protein U5-15Kd
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.75  E-value=0.18  Score=41.25  Aligned_cols=75  Identities=13%  Similarity=0.041  Sum_probs=47.0

Q ss_pred             CCEEEEeecCCCCcchHHHHHHHHhccchhhhcCCeEEEEecCChhhHHhhhcCCCCCceeEeccchHHHHHhCCC
Q 015842          230 SPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLHEYIESEVKDFWPRYWGGVVVYDQGMEFFKALGGG  305 (399)
Q Consensus       230 ~pvVLvFyRg~gCP~Cr~el~~L~e~~pef~alGV~LVaIspE~~e~~ik~F~~~~l~f~VLsDp~r~lYkaLGl~  305 (399)
                      .++||+-|-..||+.|......|.++..++.. .+.++.|-.+......+.|.=..+|--+|-..++.+...+|..
T Consensus        22 ~k~vvv~F~a~wC~~C~~~~p~l~~la~~~~~-~v~~~~VDvd~~~~la~~~~I~~~PT~~~f~~g~~i~~~~g~~   96 (137)
T d1qgva_          22 DRVVVIRFGHDWDPTCMKMDEVLYSIAEKVKN-FAVIYLVDITEVPDFNKMYELYDPCTVMFFFRNKHIMIDLGTG   96 (137)
T ss_dssp             SSEEEEEEECTTSHHHHHHHHHHHHHHHHHTT-TEEEEEEETTTCCTTTTSSCSCSSCEEEEEETTEEEEEECC--
T ss_pred             CCEEEEEEECCCCccchhcChHHHHHHHHhhc-cceEEEeeccccchhhhhcCeeeEEEEEEEeCCcEEEEEecCC
Confidence            44565656689999999999999888877753 3677777655443323344335566556665665554444543

>d1fo5a_ c.47.1.1 (A:) MJ0307, thioredoxin/glutaredoxin-like protein {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: MJ0307, thioredoxin/glutaredoxin-like protein
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=87.51  E-value=0.18  Score=36.84  Aligned_cols=40  Identities=10%  Similarity=0.114  Sum_probs=25.2

Q ss_pred             CEEEEeecCCCCcchHHHHHHHHhccchhhhcCCeEEEEec
Q 015842          231 PAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLH  271 (399)
Q Consensus       231 pvVLvFyRg~gCP~Cr~el~~L~e~~pef~alGV~LVaIsp  271 (399)
                      ++.|+.|-..||+.|+.....+.+...+... .+..+.|-.
T Consensus         3 kv~v~~F~a~wC~~C~~~~p~~~~~~~~~~~-~~~~~~~~~   42 (85)
T d1fo5a_           3 KVKIELFTSPMCPHCPAAKRVVEEVANEMPD-AVEVEYINV   42 (85)
T ss_dssp             CEEEEEEECCCSSCCCTHHHHHHHHHHHCSS-SEEEEEEES
T ss_pred             ceEEEEEECCCCcChHhhhhhcccccccccc-ccccccccc
Confidence            3555566789999999988888765443322 234444443

>d1kw4a_ a.60.1.2 (A:) Polyhomeotic {Drosophila melanogaster [TaxId: 7227]}

class: All alpha proteins
fold: SAM domain-like
superfamily: SAM/Pointed domain
family: SAM (sterile alpha motif) domain
domain: Polyhomeotic
species: Drosophila melanogaster [TaxId: 7227]

Probab=86.49  E-value=0.11  Score=37.67  Aligned_cols=53  Identities=21%  Similarity=0.322  Sum_probs=47.3

Q ss_pred             HHHHhhhccch-hhhhhhHHHHHcCCChHHHhccCcccchhhhccccccccccc
Q 015842           36 ALEIRSYLHDR-ALMQYADIFEASGKSLPELLNLSTGDLSSQFGMKRGHMARFK   88 (399)
Q Consensus        36 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   88 (399)
                      +=++-.||.+- ++=+|++.+....++=.-|+.+...+|-+.++||.||.-+.+
T Consensus        10 ~~dV~~wL~~~~~~~~y~~~F~~~~IdG~~Ll~Lt~~~L~~~~~~~~g~r~~i~   63 (70)
T d1kw4a_          10 VDDVSNFIRELPGCQDYVDDFIQQEIDGQALLRLKEKHLVNAMGMKLGPALKIV   63 (70)
T ss_dssp             HHHHHHHHHTSTTCGGGHHHHHHTTCCHHHHHHCCHHHHHTTTCCCHHHHHHHH
T ss_pred             HHHHHHHHHhCCCcHHHHHHHHHcCccHHHHHHccHHHHHHHcCCchHHHHHHH
Confidence            44667889885 799999999999999999999999999999999999987765

>d1oxja1 a.60.1.2 (A:594-655) RNA-binding protein Smaug {Drosophila melanogaster [TaxId: 7227]}

class: All alpha proteins
fold: SAM domain-like
superfamily: SAM/Pointed domain
family: SAM (sterile alpha motif) domain
domain: RNA-binding protein Smaug
species: Drosophila melanogaster [TaxId: 7227]

Probab=84.70  E-value=0.043  Score=39.71  Aligned_cols=48  Identities=21%  Similarity=0.409  Sum_probs=41.7

Q ss_pred             HHhhhccchhhhhhhHHHHHcCCChHHHhccCcccchhhhccccccccccc
Q 015842           38 EIRSYLHDRALMQYADIFEASGKSLPELLNLSTGDLSSQFGMKRGHMARFK   88 (399)
Q Consensus        38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   88 (399)
                      ++..||..=+|-+|++.++..|  ..+|+.++..|| .+-|+..||-.|.+
T Consensus         7 ~v~~WL~~l~L~~Y~~~F~~~~--~d~l~~lt~~dL-~~lGI~~GhRkkil   54 (62)
T d1oxja1           7 GIGLWLKSLRLHKYIELFKNMT--YEEMLLITEDFL-QSVGVTKGASHKLA   54 (62)
T ss_dssp             THHHHHHHTTCGGGGGGGTTCC--HHHHTTCCHHHH-HHTTCCHHHHHHHH
T ss_pred             HHHHHHHHCCcHHHHHHHHhCC--HHHHHhCCHHHH-HHcCCCHHHHHHHH
Confidence            3788999999999999998755  578999999999 56999999988765

>d2hfda1 c.47.1.20 (A:1-132) Hydrogenase-1 operon protein HyaE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: HyaE-like
domain: Hydrogenase-1 operon protein HyaE
species: Escherichia coli [TaxId: 562]

Probab=82.18  E-value=0.2  Score=40.79  Aligned_cols=60  Identities=15%  Similarity=-0.041  Sum_probs=36.6

Q ss_pred             EEEEeecCCCCcchHHHHHHHHhccchhhhcCCeEEEEecCChhhHHhhhcCCCCCceeE
Q 015842          232 AVLLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLHEYIESEVKDFWPRYWGGVVV  291 (399)
Q Consensus       232 vVLvFyRg~gCP~Cr~el~~L~e~~pef~alGV~LVaIspE~~e~~ik~F~~~~l~f~VL  291 (399)
                      +||+-|--.|||-|+..+--|.++..++....+.++.|-.+.-....+.|.-..+|--++
T Consensus        38 vVll~f~a~wCp~C~~~~pvl~ela~~~~~~~~~~a~Vd~d~~~~la~~~~V~~~PT~~~   97 (132)
T d2hfda1          38 VVLLSSDPKRTPEVSDNPVMIGELLREFPDYTWQVAIADLEQSEAIGDRFGVFRFPATLV   97 (132)
T ss_dssp             EEEECSCCSCCSSSSCCTHHHHHHHTTCTTSCEEEEEECHHHHHHHHHHHTCCSCCEEEE
T ss_pred             EEEEEeeCCCChhHHHHHHHHHHHHHHccCCcceeEEEEecCCHHHHHhhccCcceeEEE
Confidence            444445566999999998888888777766555555565544333234444344453333

>d1a8ya1 c.47.1.3 (A:3-126) Calsequestrin {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Calsequestrin
domain: Calsequestrin
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=81.15  E-value=1.7  Score=33.73  Aligned_cols=70  Identities=13%  Similarity=-0.031  Sum_probs=41.4

Q ss_pred             chhhccCCCEEEEeecCCCCcch------HHHHHHHHhccchhhhcCCeEEEEecCChhhHHhhhcCCCCC-ceeEe
Q 015842          223 ALELWRESPAVLLCIRRPGCIMC------RAEAHQLYAKKPIFDALGIQLFAVLHEYIESEVKDFWPRYWG-GVVVY  292 (399)
Q Consensus       223 LsdL~~~~pvVLvFyRg~gCP~C------r~el~~L~e~~pef~alGV~LVaIspE~~e~~ik~F~~~~l~-f~VLs  292 (399)
                      +..++++.+.+++.|--+||.-|      ......+......++..++.+..|=.+.-....+.|.=..+| .-+|.
T Consensus        21 f~~~l~~~~~~~V~FyapwC~~~~~~~~~~~~~~~~~~~a~~~~~~~v~~a~Vd~~~~~~l~~~~~I~~yPTi~~f~   97 (124)
T d1a8ya1          21 YKNVFKKYEVLALLYHEPPEDDKASQRQFEMEELILELAAQVLEDKGVGFGLVDSEKDAAVAKKLGLTEEDSIYVFK   97 (124)
T ss_dssp             HHHHHHHCSEEEEEEECCCCSSHHHHHHHHHHHHHHHHHHHHTGGGTEEEEEEETTTSHHHHHTTTCCSTTCEEEEE
T ss_pred             HHHHHHhCCeEEEEEECCCccchhhhhHHHHHHHHHHHHHHHhccCCeEEEEEEeecccchhhccccccCCcEEEec
Confidence            35566667777888888999854      333333444444556667888888776554434445423334 33443