Citrus Sinensis ID: 015847

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------40
Protein Sequence
MAAGEEKLREPFLKNEKRYYENCPGCKVDQLKDTKSGLPITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPIKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVS
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHcHHHcHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHccHHHHHHHHHHcccccccccHHHHHHHHHHHcHHHccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Secondary Structure Prediction (SSPRO)
cccccHHccccHHHHHcccccccccccHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHccHHHcHHHHEHHHHHHHHHHHHcHHHHHHHHccccccccEccHHHHHHccHHHHHHHHHHHHHHHHHHHHHHcHHHcccccccccccHHHHHHHHHccccccccccccccccccHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHccc
Coil and Loop (DISEMBL)
maageeklrepflknekryyencpgckvdqlkdtksglpitELFSIWIIVLCtalpisslfpfLYFMIKDFQIAKREedigsyagyvgssfmFGRALTSVFWGLvadrygrkpviiMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPIKAYACEIFREEHQALGLSTVSTAWGIGLiigpalggflaqpaekypnlfsseslfgkfpyflpclcISLFAFGVTIAafwlpetlhrhnddddscdvSYDALESASAevkeeegreatpkksllknwplmSSIIVYCVFSLHDMAYSEIFSLWanspkklgglnystQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVltiplltsypyIAMLSGFGLAFLLNCASVVKNLLSVS
Flexible Loop (DISEMBL)
maageeklrepflknekRYYENCPGCKVDQLKDTKSGLPITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPIKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSYDALESAsaevkeeegreatpkksllknwplMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVS
Low Complexity Region (SEG)
MAAGEEKLREPFLKNEKRYYENCPGCKVDQLKDTKSGLPITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPIKAYACEIFREEHQALGLSTVSTawgigliigpalggflaQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNddddscdvsydALESASAEVKEEEGREATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVS
Disordered region (IsUnstruct)
****************KRYYENCPGCKVDQLKDTKSGLPITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPIKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHR***********************************LLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLL***
Disordered Region (DISOPRED)
*****************************************ELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPIKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSYDALES************ATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVS
Disordered Region (DISEMBL)
MAAGEEKLREPFLKNEKRYYENCPGCKVDQLKDTKSGLPITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPIKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSYDAL******************KSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVS
Disordered Region (DISPRO)
*********EPFLKNEKRYYENCPGCKVDQLKDTKSGLPITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPIKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRH********************************KSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVS
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAAGEEKLREPFLKNEKRYYENCPGCKVDQLKDTKSGLPITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPIKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	399	2.2.26 [Sep-21-2011]
Q94BZ1	478	Protein ZINC INDUCED FACI	yes	no	0.954	0.797	0.687	1e-154
Q8RWN2	486	Protein ZINC INDUCED FACI	no	no	0.984	0.808	0.638	1e-143
Q3EAQ5	484	Probable peptide/nitrate	no	no	0.934	0.770	0.598	1e-130
P25351	611	Uncharacterized membrane	yes	no	0.546	0.356	0.324	1e-28
B4EYY4	402	Multidrug resistance prot	yes	no	0.441	0.437	0.281	4e-10
A8GCZ5	411	Multidrug resistance prot	no	no	0.380	0.369	0.303	2e-09
D8MQN9	411	Multidrug resistance prot	no	no	0.488	0.474	0.269	2e-09
P0A4K5	399	Multi-drug resistance eff	yes	no	0.363	0.363	0.298	2e-08
P0A4K4	399	Multi-drug resistance eff	yes	no	0.363	0.363	0.298	2e-08
P02980	401	Tetracycline resistance p	yes	no	0.456	0.453	0.248	4e-08

>sp|Q94BZ1|ZIFL1_ARATH Protein ZINC INDUCED FACILITATOR-LIKE 1 OS=Arabidopsis thaliana GN=ZIFL1 PE=2 SV=1

 Score =  544 bits (1401), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 264/384 (68%), Positives = 311/384 (80%), Gaps = 3/384 (0%)

Query: 16  EKRYYENCPGCKVDQLKDTKSGLPITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAK 75
           EK ++E+C GCKVDQ+K  + G P  ELF++WIIVLCTALPISSLFPFLYFMI DF IAK
Sbjct: 11  EKNFHEDCSGCKVDQMKRLRRGFPFWELFTVWIIVLCTALPISSLFPFLYFMIDDFNIAK 70

Query: 76  REEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNF 135
           +EEDIG YAG+VG SFM GRA TSV WGLVADRYGRKPVI++GTASVV+FNTLFGLS+NF
Sbjct: 71  KEEDIGFYAGFVGCSFMLGRAFTSVAWGLVADRYGRKPVILIGTASVVVFNTLFGLSLNF 130

Query: 136 WMAVLTRFLLGSLNGLLGPIKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQ 195
           WMA++TRF LGS NGLLGPIKAYA EIFR+E+Q L LS VSTAWGIGLIIGPA+GGFLAQ
Sbjct: 131 WMAIITRFCLGSFNGLLGPIKAYAMEIFRDEYQGLALSAVSTAWGIGLIIGPAIGGFLAQ 190

Query: 196 PAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSYD 255
           PA++YP+LFS +S+FGKFP+FLPCL IS+FAF VTI +  +PETLH H  +DD    SYD
Sbjct: 191 PAKQYPSLFSQDSIFGKFPFFLPCLAISVFAFLVTIVSSRIPETLHNHKFNDDE---SYD 247

Query: 256 ALESASAEVKEEEGREATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKL 315
           AL+  S + +  +  E   K SLL NWPL+SSIIVYCVFSLHDMAY+EIFSLWANSP+K 
Sbjct: 248 ALKDLSDDPESNKVAERNGKSSLLNNWPLISSIIVYCVFSLHDMAYTEIFSLWANSPRKY 307

Query: 316 GGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIA 375
           GGL YST  VG VLA +GF LL+FQLSLY + ER+LGPI+V RI+G L + +L+ YP IA
Sbjct: 308 GGLGYSTADVGSVLAFSGFGLLIFQLSLYSYAERLLGPIIVTRISGSLAMVVLSCYPLIA 367

Query: 376 MLSGFGLAFLLNCASVVKNLLSVS 399
            LSG  L   +  ASV K++L  S
Sbjct: 368 KLSGLALTVTVTSASVAKSVLGTS 391

Major facilitator superfamily (MFS) transporter probably involved in 2,4-dichlorophenoxyacetic acid (2,4-D) export.
Arabidopsis thaliana (taxid: 3702)

>sp|Q8RWN2|ZIF1_ARATH Protein ZINC INDUCED FACILITATOR 1 OS=Arabidopsis thaliana GN=ZIF1 PE=1 SV=2

 Score =  507 bits (1305), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 254/398 (63%), Positives = 308/398 (77%), Gaps = 5/398 (1%)

Query: 6   EKLREPFLKNEKRYYENCPGCKVDQLKDTKSGLPITELFSIWIIVLCTALPISSLFPFLY 65
           E+ +E  L+ ++ Y++ CPGCKV+Q+K  + G P  EL  +WIIVL T+LPISSL+PFLY
Sbjct: 3   EEYKEALLE-KQNYHDGCPGCKVEQMKQLRRGYPYLELSFVWIIVLSTSLPISSLYPFLY 61

Query: 66  FMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIF 125
           +MI+DF +AK E+DIG YAG+VG SFM GRALTSVFWG+VADRYGRKP+I++GT S+ IF
Sbjct: 62  YMIEDFGVAKTEKDIGFYAGFVGCSFMLGRALTSVFWGIVADRYGRKPIILLGTISIAIF 121

Query: 126 NTLFGLSVNFWMAVLTRFLLGSLNGLLGPIKAYACEIFREEHQALGLSTVSTAWGIGLII 185
           N LFGLS NFWMA+ TRFLLGS N LLG +KAYA EIFR+E+QA  +S VSTAWGIGLII
Sbjct: 122 NALFGLSSNFWMAIGTRFLLGSFNCLLGTMKAYASEIFRDEYQATAMSAVSTAWGIGLII 181

Query: 186 GPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHND 245
           GPALGGFLAQPA+KYPN+FS ESLFG+F Y LPC  IS FA  VT+   ++PETLH H  
Sbjct: 182 GPALGGFLAQPADKYPNVFSQESLFGRFRYALPCFTISAFALLVTVLCCFIPETLHNHKL 241

Query: 246 DDDSCDVSYDALESASAEVKEEEGR----EATPKKSLLKNWPLMSSIIVYCVFSLHDMAY 301
           D  S D SYD LE+AS E     G+    E    +SLLKNWPLMSSIIVYCV  LHD AY
Sbjct: 242 DSLSHDDSYDILEAASHESSPSTGKAGKNERKASQSLLKNWPLMSSIIVYCVLCLHDTAY 301

Query: 302 SEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAG 361
           SEIF+LWANSP+K GGL+YST  VG VLAI+G  L  FQ+ +YP  E++LGP++V R AG
Sbjct: 302 SEIFALWANSPRKYGGLSYSTNEVGTVLAISGLGLFSFQVFVYPLAEKLLGPVLVTRYAG 361

Query: 362 VLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVS 399
            L IP+  SYP+IA LSG  L+ +LNCAS++ N+LSVS
Sbjct: 362 ALMIPIQMSYPFIAGLSGLSLSLMLNCASILINVLSVS 399

Major facilitator superfamily (MFS) transporter involved in zinc tolerance by participating in vacuolar sequestration of zinc.

Arabidopsis thaliana (taxid: 3702)

>sp|Q3EAQ5|PTR36_ARATH Probable peptide/nitrate transporter At3g43790 OS=Arabidopsis thaliana GN=ZIFL2 PE=2 SV=2

 Score =  466 bits (1198), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 230/384 (59%), Positives = 291/384 (75%), Gaps = 11/384 (2%)

Query: 21  ENCPGCKVDQLKDTKSGLPITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDI 80
           E+CPGC +D+ K  + G+P   L  IW++ LCTALPISSLFP++YFMI+DF IAK+EEDI
Sbjct: 15  EDCPGCIIDRTKQQQRGVPYLHLSFIWLVSLCTALPISSLFPYIYFMIRDFHIAKQEEDI 74

Query: 81  GSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVL 140
           G YAG+VGSSFM GRALTS+FWG +ADRYGRKP+I++GT SV+IFNTLFGLS +FW+A+ 
Sbjct: 75  GFYAGFVGSSFMIGRALTSIFWGKLADRYGRKPIILIGTFSVIIFNTLFGLSTSFWLAIS 134

Query: 141 TRFLLGSLNGLLGPIKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKY 200
            RFLLG  N LLG I+AYA E+  EE+ AL LS VST+ GIGLI+GPA+GG+LAQPAEKY
Sbjct: 135 VRFLLGCFNCLLGVIRAYASEVVSEEYNALSLSVVSTSRGIGLILGPAIGGYLAQPAEKY 194

Query: 201 PNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSYDALESA 260
           PN+FS  S+FG+FPYFLP L IS++A  V IA +WLPETLH        C ++   L   
Sbjct: 195 PNIFSQSSVFGRFPYFLPSLVISVYATAVLIACWWLPETLHTR------CRIAQGRLNPT 248

Query: 261 SAEVKEEEG-----REATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKL 315
                E  G     ++   K SLL+N PLM+ IIVYCVFSL ++AY+EIFSLWA S +  
Sbjct: 249 ELNDDESRGGGLDEQKIINKPSLLRNRPLMAIIIVYCVFSLQEIAYNEIFSLWAVSDRSY 308

Query: 316 GGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIA 375
           GGL++S+Q VGEVLAI+G  LLVFQL +YP LE+ +G + V R++ VL IPLL+ YPYIA
Sbjct: 309 GGLSFSSQDVGEVLAISGLGLLVFQLLVYPPLEKSVGLLAVIRLSAVLLIPLLSCYPYIA 368

Query: 376 MLSGFGLAFLLNCASVVKNLLSVS 399
           +LSG  L  ++NCAS++KN LS+S
Sbjct: 369 LLSGVTLHLVINCASIIKNALSIS 392

Arabidopsis thaliana (taxid: 3702)

>sp|P25351|YCR3_YEAST Uncharacterized membrane protein YCR023C OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YCR023C PE=1 SV=2

 Score =  128 bits (321), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 73/225 (32%), Positives = 120/225 (53%), Gaps = 7/225 (3%)

Query: 31  LKDTKSGLPITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSS 90
            K+   G P  +L  + ++     +  SSLFP++YFM++DF IA  +  +  Y+GY+ SS
Sbjct: 8   FKEQMDGFPWVQLVVVSLVRFSEPIAFSSLFPYVYFMVRDFNIAPNDAQVSKYSGYLSSS 67

Query: 91  FMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNG 150
           F   + +++  WG  ++++GRK  +  G     +   + G S NF+ A++ R L+G LNG
Sbjct: 68  FALCQVISAYHWGRFSEKHGRKITLTCGLIGTSVSLLILGFSRNFYQALVARSLMGLLNG 127

Query: 151 LLGPIKAYACEIFRE-EHQALGLSTVSTAWGIGLIIGPALGGFLA---QPAEKYPNLFS- 205
            +G I+    EI  E +HQAL  ST+   +  G ++GP +GGFL        + P  F  
Sbjct: 128 NVGVIRTIIGEIATERKHQALAFSTMPLLFQFGAVVGPMIGGFLVFRDGTMNEVPLWFPH 187

Query: 206 -SESLFGKFPYFLPCLCISLF-AFGVTIAAFWLPETLHRHNDDDD 248
            ++ +   +PY LP + + +F  FG+T A  +L ET     D  D
Sbjct: 188 FAKRIIRSYPYALPNVVVCMFLMFGLTNATLFLEETHPAFKDRRD 232

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|B4EYY4|MDTG_PROMH Multidrug resistance protein MdtG OS=Proteus mirabilis (strain HI4320) GN=mdtG PE=3 SV=1

 Score = 66.2 bits (160), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 52/185 (28%), Positives = 83/185 (44%), Gaps = 9/185 (4%)

Query: 42  ELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGS-SFMFGRALTSV 100
            L+ +W     T    S + PFL   +++  I K  E +  + G   S +F+F  A+ + 
Sbjct: 13  NLYIVWFGCFLTGAGFSLIMPFLPLYVEELGI-KDHESLNLWTGVAFSITFLF-SAIAAP 70

Query: 101 FWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPIKAYAC 160
           FWG ++DR GRK +++     + I   L G + N W  ++ R LLG L G +    A   
Sbjct: 71  FWGKLSDRKGRKLMLLRSALGMAIVMVLIGFAQNIWQLLILRALLGVLGGFVPNANALIA 130

Query: 161 EIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCL 220
                +     L T+ST    G +IGP +GG LA      P  F + ++         C 
Sbjct: 131 TQVPVKKSGWALGTLSTGAVSGALIGPLIGGILADLYGLRPVFFITAAV------LFICF 184

Query: 221 CISLF 225
            ++LF
Sbjct: 185 IVTLF 189

Proteus mirabilis (strain HI4320) (taxid: 529507)

>sp|A8GCZ5|MDTG_SERP5 Multidrug resistance protein MdtG OS=Serratia proteamaculans (strain 568) GN=mdtG PE=3 SV=1

 Score = 64.3 bits (155), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 47/155 (30%), Positives = 72/155 (46%), Gaps = 3/155 (1%)

Query: 42  ELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGS-SFMFGRALTSV 100
            LF  W+    T    S + PFL   ++   +    + +  ++G V S +F+F  A+ S 
Sbjct: 13  NLFVAWLGCFLTGAAFSLIMPFLPLYVETLGVTG-HQALNMWSGLVFSITFLFS-AIASP 70

Query: 101 FWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPIKAYAC 160
           FWG +ADR GRK +++     + I   L G++ N W  +  R +LG L G +    A   
Sbjct: 71  FWGGLADRRGRKLMLLRSALGMSIVMLLMGMAQNIWQFLALRAVLGLLGGFIPNANALIA 130

Query: 161 EIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQ 195
                      L T+ST    G +IGP +GG LA 
Sbjct: 131 TQVPRNRSGWALGTLSTGGVSGALIGPLIGGLLAD 165

Serratia proteamaculans (strain 568) (taxid: 399741)

>sp|D8MQN9|MDTG_ERWBE Multidrug resistance protein MdtG OS=Erwinia billingiae (strain Eb661) GN=mdtG PE=3 SV=1

 Score = 63.5 bits (153), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 55/204 (26%), Positives = 85/204 (41%), Gaps = 9/204 (4%)

Query: 42  ELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGS-SFMFGRALTSV 100
            LF  W     T +  S + PFL   ++   +      +  ++G V S +F+F  A+ S 
Sbjct: 16  NLFVAWCGCFLTGIAFSLVMPFLPLYVELLGVTD-PHSLNMWSGLVFSITFLFS-AIASP 73

Query: 101 FWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPIKAYAC 160
           FWG +ADR GRK +++     + +   L GL+ + W  +  R +LG L G +    A   
Sbjct: 74  FWGGLADRKGRKIMLLRSALGMSVVMVLMGLATSIWQFLALRAVLGLLGGFVPNANALIA 133

Query: 161 EIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCL 220
                      L  +ST    G +IGP +GG LA      P  F + S+         C 
Sbjct: 134 TQVPRNKSGWALGWLSTGAVSGALIGPLIGGLLADSFGLRPVFFITASV------LFVCF 187

Query: 221 CISLFAFGVTIAAFWLPETLHRHN 244
            ++LFA           + LH H 
Sbjct: 188 IMTLFAVREEFVPVQKKDMLHAHQ 211

Erwinia billingiae (strain Eb661) (taxid: 634500)

>sp|P0A4K5|PMRA_STRR6 Multi-drug resistance efflux pump PmrA OS=Streptococcus pneumoniae (strain ATCC BAA-255 / R6) GN=pmrA PE=3 SV=1

 Score = 60.8 bits (146), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 45/151 (29%), Positives = 72/151 (47%), Gaps = 6/151 (3%)

Query: 47  WIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVA 106
           W     T   IS + PF+   +++  +  ++  +  YAG   S      AL S  WG++A
Sbjct: 14  WFGNFLTGASISLVVPFMPIFVENLGVGSQQ--VAFYAGLAISVSAISAALFSPIWGILA 71

Query: 107 DRYGRKPVIIMGTASVVIFNTLFGLSV--NFWMAVLTRFLLGSLNGLLGPIKAYACEIFR 164
           D+YGRKP++I    ++ I  T+ GL+   N +  +  R L G   G +    A       
Sbjct: 72  DKYGRKPMMIRAGLAMTI--TMGGLAFVPNIYWLIFLRLLNGVFAGFVPNATALIASQVP 129

Query: 165 EEHQALGLSTVSTAWGIGLIIGPALGGFLAQ 195
           +E     L T+ST    G + GP +GGF+A+
Sbjct: 130 KEKSGSALGTLSTGVVAGTLTGPFIGGFIAE 160

Efflux pump for various substrates.

Streptococcus pneumoniae (strain ATCC BAA-255 / R6) (taxid: 171101)

>sp|P0A4K4|PMRA_STRPN Multi-drug resistance efflux pump PmrA OS=Streptococcus pneumoniae serotype 4 (strain ATCC BAA-334 / TIGR4) GN=pmrA PE=3 SV=1

 Score = 60.8 bits (146), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 45/151 (29%), Positives = 72/151 (47%), Gaps = 6/151 (3%)

Query: 47  WIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVA 106
           W     T   IS + PF+   +++  +  ++  +  YAG   S      AL S  WG++A
Sbjct: 14  WFGNFLTGASISLVVPFMPIFVENLGVGSQQ--VAFYAGLAISVSAISAALFSPIWGILA 71

Query: 107 DRYGRKPVIIMGTASVVIFNTLFGLSV--NFWMAVLTRFLLGSLNGLLGPIKAYACEIFR 164
           D+YGRKP++I    ++ I  T+ GL+   N +  +  R L G   G +    A       
Sbjct: 72  DKYGRKPMMIRAGLAMTI--TMGGLAFVPNIYWLIFLRLLNGVFAGFVPNATALIASQVP 129

Query: 165 EEHQALGLSTVSTAWGIGLIIGPALGGFLAQ 195
           +E     L T+ST    G + GP +GGF+A+
Sbjct: 130 KEKSGSALGTLSTGVVAGTLTGPFIGGFIAE 160

Efflux pump for various substrates.

Streptococcus pneumoniae (taxid: 1313)

>sp|P02980|TCR2_ECOLX Tetracycline resistance protein, class B OS=Escherichia coli GN=tetA PE=1 SV=1

 Score = 59.7 bits (143), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 52/209 (24%), Positives = 95/209 (45%), Gaps = 27/209 (12%)

Query: 48  IIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVAD 107
           +I L  A+ I  + P L  ++++F      EDI ++ G + + +   + + + + G ++D
Sbjct: 10  VITLLDAMGIGLIMPVLPTLLREF---IASEDIANHFGVLLALYALMQVIFAPWLGKMSD 66

Query: 108 RYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPIKAYACEIFREEH 167
           R+GR+PV+++      +   L   S   WM  L R     L+G+ G   A A  +  +  
Sbjct: 67  RFGRRPVLLLSLIGASLDYLLLAFSSALWMLYLGRL----LSGITGATGAVAASVIADTT 122

Query: 168 QALG----LSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCIS 223
            A         +  ++G+GLI GP +GGF     E  P+           P+F+  L ++
Sbjct: 123 SASQRVKWFGWLGASFGLGLIAGPIIGGF---AGEISPH----------SPFFIAAL-LN 168

Query: 224 LFAFGVTIAAFWLPETLHRHNDDDDSCDV 252
           +  F V +  FW  ET +  ++ D    V
Sbjct: 169 IVTFLVVM--FWFRETKNTRDNTDTEVGV 195

Resistance to tetracycline by an active tetracycline efflux. This is an energy-dependent process that decreases the accumulation of the antibiotic in whole cells. This protein functions as a metal-tetracycline/H(+) antiporter.

Escherichia coli (taxid: 562)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	399
224097490	495	predicted protein [Populus trichocarpa]	0.984	0.793	0.757	1e-169
359487104	1624	PREDICTED: uncharacterized protein LOC10	0.984	0.241	0.707	1e-167
296085436	518	unnamed protein product [Vitis vinifera]	0.984	0.758	0.707	1e-166
225465403	487	PREDICTED: protein ZINC INDUCED FACILITA	0.982	0.804	0.725	1e-164
225465405	487	PREDICTED: protein ZINC INDUCED FACILITA	0.984	0.806	0.739	1e-162
297807399	479	hypothetical protein ARALYDRAFT_488196 [	0.952	0.793	0.696	1e-157
30684565	478	zinc induced facilitator-like 1 protein	0.954	0.797	0.687	1e-152
79327804	411	zinc induced facilitator-like 1 protein	0.954	0.927	0.687	1e-152
227202678	392	AT5G13750 [Arabidopsis thaliana]	0.954	0.971	0.690	1e-151
359481459	490	PREDICTED: protein ZINC INDUCED FACILITA	0.984	0.802	0.673	1e-150

>gi|224097490|ref|XP_002310957.1| predicted protein [Populus trichocarpa] gi|222850777|gb|EEE88324.1| predicted protein [Populus trichocarpa]

 Score =  602 bits (1551), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 303/400 (75%), Positives = 347/400 (86%), Gaps = 7/400 (1%)

Query: 6   EKLREPFLKNEKRYYENCPGCKVDQLKDTKSGLPITELFSIWIIVLCTALPISSLFPFLY 65
           E+ RE  LK +  YYENCPGCKVDQLK+ K G P  +L SIWI+VLCTALPIS+LFPFLY
Sbjct: 3   EEYREALLKKDD-YYENCPGCKVDQLKELKKGFPFRDLISIWIVVLCTALPISTLFPFLY 61

Query: 66  FMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIF 125
           FMI+DF IA+REEDIG YAGYVGSSFM GRALTSVFWG+VADRYGRKPVI++GT +VVIF
Sbjct: 62  FMIRDFGIAEREEDIGYYAGYVGSSFMIGRALTSVFWGIVADRYGRKPVILLGTIAVVIF 121

Query: 126 NTLFGLSVNFWMAVLTRFLLGSLNGLLGPIKAYACEIFREEHQALGLSTVSTAWGIGLII 185
           NTLFGLSVNFWMA++TRFLLGSLNGLLGPIKAYA EIFR E+QALGLSTVSTAWG+GLII
Sbjct: 122 NTLFGLSVNFWMAIITRFLLGSLNGLLGPIKAYAVEIFRAEYQALGLSTVSTAWGLGLII 181

Query: 186 GPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHND 245
           GPALGGFLAQPAEKYPNLFS ESLFG+FPYFLPC CISLFA  VTI + WLPETLH HN+
Sbjct: 182 GPALGGFLAQPAEKYPNLFSKESLFGRFPYFLPCFCISLFALVVTIVSCWLPETLHVHNE 241

Query: 246 DDDSCDVSYDALESASAEVK------EEEGREATPKKSLLKNWPLMSSIIVYCVFSLHDM 299
              S + SYDALE+A+   K      +++GR+ +  +SLLKNWPLMSSIIVYC+FSLHDM
Sbjct: 242 KKTSSNDSYDALEAATGASKGDETRTDDKGRKPSSNESLLKNWPLMSSIIVYCIFSLHDM 301

Query: 300 AYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARI 359
           AY+EIFSLWA S +KLGGL Y+T+ VGEVLAI+GFSLLVFQLSLYPF+ERILGPI VA+I
Sbjct: 302 AYTEIFSLWAESSRKLGGLGYTTEDVGEVLAISGFSLLVFQLSLYPFVERILGPIPVAQI 361

Query: 360 AGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVS 399
           A  L+I LL+SYP+IAMLSG GL+ L+NCAS++KN+ SVS
Sbjct: 362 AAALSILLLSSYPFIAMLSGLGLSILINCASIMKNVFSVS 401

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359487104|ref|XP_002274088.2| PREDICTED: uncharacterized protein LOC100259102 [Vitis vinifera]

 Score =  593 bits (1530), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 283/400 (70%), Positives = 339/400 (84%), Gaps = 7/400 (1%)

Query: 5    EEKLREPFLKNEKRYYENCPGCKVDQLKDTKSGLPITELFSIWIIVLCTALPISSLFPFL 64
            EE+ RE  LK  K Y+E CPGC+V+ LKDT+ GLP+ +LF +WI+VLC ALPISSLFP+L
Sbjct: 1140 EEEQREVLLK--KVYHEGCPGCRVEHLKDTQRGLPVRQLFFVWIVVLCNALPISSLFPYL 1197

Query: 65   YFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVI 124
            YFMI+DF IAK E+DIG YAGY G+S+MFGRALTS+ WG+VADRYGRKPVI++GTASVVI
Sbjct: 1198 YFMIRDFNIAKTEKDIGYYAGYAGASYMFGRALTSILWGMVADRYGRKPVILVGTASVVI 1257

Query: 125  FNTLFGLSVNFWMAVLTRFLLGSLNGLLGPIKAYACEIFREEHQALGLSTVSTAWGIGLI 184
            FNTLFGLS+N+WMA+ +RFLLGS++ LLGPI AYA EIFREE+QALGLST++TAWG+GLI
Sbjct: 1258 FNTLFGLSLNYWMAISSRFLLGSMSTLLGPIMAYATEIFREEYQALGLSTINTAWGVGLI 1317

Query: 185  IGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHN 244
            IGPALGGFLAQPAEKYPN+FS ES+FG+FPYFLPCLC S++AFG+TIA  WL ETLH HN
Sbjct: 1318 IGPALGGFLAQPAEKYPNIFSKESIFGRFPYFLPCLCTSVYAFGITIACCWLQETLHTHN 1377

Query: 245  DDDDSCDVSYDALE-----SASAEVKEEEGREATPKKSLLKNWPLMSSIIVYCVFSLHDM 299
            +++     SY+ALE     +A   V E E  + T K+SL+KNWPLMSSIIV+CVFSLHDM
Sbjct: 1378 ENNKLSKNSYNALEAPCGFNAEEAVNEIEANKPTSKESLIKNWPLMSSIIVFCVFSLHDM 1437

Query: 300  AYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARI 359
            AYSEIFSLWA SP+K GGL+YST  VG VLAI+GF +LVFQL LYP+LE++LGPI++ RI
Sbjct: 1438 AYSEIFSLWAVSPRKYGGLSYSTDDVGVVLAISGFGVLVFQLFLYPYLEKLLGPIIICRI 1497

Query: 360  AGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVS 399
            AGVL+IPLL  YP IAMLSGF L+  LNCAS +KN+LSVS
Sbjct: 1498 AGVLSIPLLAIYPLIAMLSGFNLSLALNCASAMKNVLSVS 1537

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296085436|emb|CBI29168.3| unnamed protein product [Vitis vinifera]

 Score =  591 bits (1524), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 283/400 (70%), Positives = 339/400 (84%), Gaps = 7/400 (1%)

Query: 5   EEKLREPFLKNEKRYYENCPGCKVDQLKDTKSGLPITELFSIWIIVLCTALPISSLFPFL 64
           EE+ RE  LK  K Y+E CPGC+V+ LKDT+ GLP+ +LF +WI+VLC ALPISSLFP+L
Sbjct: 34  EEEQREVLLK--KVYHEGCPGCRVEHLKDTQRGLPVRQLFFVWIVVLCNALPISSLFPYL 91

Query: 65  YFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVI 124
           YFMI+DF IAK E+DIG YAGY G+S+MFGRALTS+ WG+VADRYGRKPVI++GTASVVI
Sbjct: 92  YFMIRDFNIAKTEKDIGYYAGYAGASYMFGRALTSILWGMVADRYGRKPVILVGTASVVI 151

Query: 125 FNTLFGLSVNFWMAVLTRFLLGSLNGLLGPIKAYACEIFREEHQALGLSTVSTAWGIGLI 184
           FNTLFGLS+N+WMA+ +RFLLGS++ LLGPI AYA EIFREE+QALGLST++TAWG+GLI
Sbjct: 152 FNTLFGLSLNYWMAISSRFLLGSMSTLLGPIMAYATEIFREEYQALGLSTINTAWGVGLI 211

Query: 185 IGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHN 244
           IGPALGGFLAQPAEKYPN+FS ES+FG+FPYFLPCLC S++AFG+TIA  WL ETLH HN
Sbjct: 212 IGPALGGFLAQPAEKYPNIFSKESIFGRFPYFLPCLCTSVYAFGITIACCWLQETLHTHN 271

Query: 245 DDDDSCDVSYDALES-----ASAEVKEEEGREATPKKSLLKNWPLMSSIIVYCVFSLHDM 299
           +++     SY+ALE+     A   V E E  + T K+SL+KNWPLMSSIIV+CVFSLHDM
Sbjct: 272 ENNKLSKNSYNALEAPCGFNAEEAVNEIEANKPTSKESLIKNWPLMSSIIVFCVFSLHDM 331

Query: 300 AYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARI 359
           AYSEIFSLWA SP+K GGL+YST  VG VLAI+GF +LVFQL LYP+LE++LGPI++ RI
Sbjct: 332 AYSEIFSLWAVSPRKYGGLSYSTDDVGVVLAISGFGVLVFQLFLYPYLEKLLGPIIICRI 391

Query: 360 AGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVS 399
           AGVL+IPLL  YP IAMLSGF L+  LNCAS +KN+LSVS
Sbjct: 392 AGVLSIPLLAIYPLIAMLSGFNLSLALNCASAMKNVLSVS 431

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225465403|ref|XP_002277598.1| PREDICTED: protein ZINC INDUCED FACILITATOR-LIKE 1 [Vitis vinifera] gi|296085440|emb|CBI29172.3| unnamed protein product [Vitis vinifera]

 Score =  585 bits (1508), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 290/400 (72%), Positives = 338/400 (84%), Gaps = 8/400 (2%)

Query: 6   EKLREPFLKNEKRYYENCPGCKVDQLKDTKSGLPITELFSIWIIVLCTALPISSLFPFLY 65
           E+ + P LK  K YY+NC GC+V+QLK+T+ GLPI EL SIW +VLCTALPISSLFPFLY
Sbjct: 3   EEQQVPLLK--KVYYQNCSGCRVEQLKETRRGLPIRELVSIWSVVLCTALPISSLFPFLY 60

Query: 66  FMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIF 125
           FMI+DF IAKREEDIG YAGYVGS+FM GRALTSV WG+VADRYGRKPVI++GT +VVIF
Sbjct: 61  FMIRDFHIAKREEDIGYYAGYVGSAFMLGRALTSVAWGMVADRYGRKPVIMIGTITVVIF 120

Query: 126 NTLFGLSVNFWMAVLTRFLLGSLNGLLGPIKAYACEIFREEHQALGLSTVSTAWGIGLII 185
           NTLFGLSVNFWMA+ TRFLLGSLNG+LGPIKAYA EIFR+E+QALGLSTVSTA GIGLII
Sbjct: 121 NTLFGLSVNFWMALSTRFLLGSLNGVLGPIKAYAAEIFRDEYQALGLSTVSTARGIGLII 180

Query: 186 GPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHND 245
           GPALGGFLAQPAEKYP++FS +SLFG+FPYFLPCL IS++A  +T+A  WLPETLH HN+
Sbjct: 181 GPALGGFLAQPAEKYPDIFSEDSLFGRFPYFLPCLFISVYAMIITVACCWLPETLHTHNE 240

Query: 246 DDDSCDVSYDALESA----SAEVKEE--EGREATPKKSLLKNWPLMSSIIVYCVFSLHDM 299
           +  S + SYDALE A    +A+ KE+  EG E T  +SL  NWPLMSSII+YCVFSLHD+
Sbjct: 241 NKKSREDSYDALEGANGGSNAKEKEQEIEGSEPTSNESLFMNWPLMSSIIIYCVFSLHDI 300

Query: 300 AYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARI 359
           AY EIFSLWA SP+  GGL+YST  VG VLAI+GF L V Q++LYP +ER LGP+M+ RI
Sbjct: 301 AYIEIFSLWAVSPRIHGGLSYSTDDVGVVLAISGFGLFVSQVTLYPLVERFLGPVMICRI 360

Query: 360 AGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVS 399
           AGVL+IPLL SYP IAMLSG  L+ +LNCASV+KN+LSVS
Sbjct: 361 AGVLSIPLLASYPLIAMLSGSTLSVVLNCASVLKNVLSVS 400

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225465405|ref|XP_002277751.1| PREDICTED: protein ZINC INDUCED FACILITATOR-LIKE 1 [Vitis vinifera] gi|296085442|emb|CBI29174.3| unnamed protein product [Vitis vinifera]

 Score =  577 bits (1487), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 298/403 (73%), Positives = 344/403 (85%), Gaps = 10/403 (2%)

Query: 3   AGEEKLREPFLKNEKRYYENCPGCKVDQLKDTKSGLPITELFSIWIIVLCTALPISSLFP 62
           A E+++  P LK  K YY+NC GC+V+QLK+T+ GLPI EL SIW +VLCTALPISSLFP
Sbjct: 2   AAEQQV--PLLK--KVYYQNCSGCRVEQLKETRRGLPIRELLSIWTVVLCTALPISSLFP 57

Query: 63  FLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASV 122
           FLYFMI+DF IAKREEDIG YAGYVGS+FM GRALTSV WG+VADRYGRKPVI++GT +V
Sbjct: 58  FLYFMIRDFHIAKREEDIGYYAGYVGSAFMLGRALTSVAWGMVADRYGRKPVIMIGTIAV 117

Query: 123 VIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPIKAYACEIFREEHQALGLSTVSTAWGIG 182
           VIFNTLFGLSVNFWMA+ TRFLLGSLNGLLGPIKAYA EIFR+E+QALGLSTVSTAWGIG
Sbjct: 118 VIFNTLFGLSVNFWMALSTRFLLGSLNGLLGPIKAYAAEIFRDEYQALGLSTVSTAWGIG 177

Query: 183 LIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHR 242
           LIIGPALGGFLAQPAEKYP++FS +SLFG+FPYFLPCL IS++A  VT+A  WLPETLH 
Sbjct: 178 LIIGPALGGFLAQPAEKYPDIFSEDSLFGRFPYFLPCLFISVYAMIVTVACCWLPETLHT 237

Query: 243 HNDDDDSCDVSYDALESA----SAEVKEE--EGREATPKKSLLKNWPLMSSIIVYCVFSL 296
           HN++  S + SYDALE+A    +A+ KE+  EG E T  +SL  NWPLMSSIIVYCVFSL
Sbjct: 238 HNENKKSREDSYDALEAANGGSNAKEKEQEIEGSEPTSNESLFMNWPLMSSIIVYCVFSL 297

Query: 297 HDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMV 356
           HDMAY+EIFSLWA SP+  GGL+YST  VG VLAI+GF LLV QL+LYP +ER LGP+M+
Sbjct: 298 HDMAYTEIFSLWAVSPRIHGGLSYSTDDVGVVLAISGFGLLVSQLTLYPLVERFLGPVMI 357

Query: 357 ARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVS 399
            RIAGVL+IPLL SYP IAMLSG  L+ +LNCASV+KN+LSVS
Sbjct: 358 CRIAGVLSIPLLASYPLIAMLSGSSLSVVLNCASVLKNVLSVS 400

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297807399|ref|XP_002871583.1| hypothetical protein ARALYDRAFT_488196 [Arabidopsis lyrata subsp. lyrata] gi|297317420|gb|EFH47842.1| hypothetical protein ARALYDRAFT_488196 [Arabidopsis lyrata subsp. lyrata]

 Score =  560 bits (1442), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 269/386 (69%), Positives = 317/386 (82%), Gaps = 6/386 (1%)

Query: 16  EKRYYENCPGCKVDQLKDTKSGLPITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAK 75
           E +++E+CPGCKVDQ+K  + G P+ ELF++WIIVLCTALPISSLFPFLYFMI DF IAK
Sbjct: 11  ENKFHEDCPGCKVDQMKRLRRGFPLWELFTVWIIVLCTALPISSLFPFLYFMIDDFNIAK 70

Query: 76  REEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNF 135
           +EEDIG YAG+VG SFM GRA TSV WGLVADRYGRKPVI++GTASVV+FNTLFGLS+NF
Sbjct: 71  KEEDIGFYAGFVGCSFMLGRAFTSVIWGLVADRYGRKPVILIGTASVVVFNTLFGLSLNF 130

Query: 136 WMAVLTRFLLGSLNGLLGPIKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQ 195
           WMA++TRF LGS NGLLGPIKAYA EIFR+E+Q L LS VSTAWGIGLIIGPA+GGFLAQ
Sbjct: 131 WMAIITRFCLGSFNGLLGPIKAYAMEIFRDEYQGLALSAVSTAWGIGLIIGPAIGGFLAQ 190

Query: 196 PAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHN--DDDDSCDVS 253
           PA +YP+LFS +S+FGKFP+FLPC  IS+FAF VTI + W+PETLH H   DDDD    S
Sbjct: 191 PATQYPSLFSQDSIFGKFPFFLPCFAISVFAFLVTIISLWIPETLHNHKYVDDDD----S 246

Query: 254 YDALESASAEVKEEEGREATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPK 313
           +DAL+  S + +  +  E   K SLL NWPL+SSIIVYCVFSLHDMAY+EIFSLWANSP+
Sbjct: 247 FDALKYLSHDPESNKVVERNEKSSLLNNWPLISSIIVYCVFSLHDMAYTEIFSLWANSPR 306

Query: 314 KLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPY 373
           K GGL YST  VG VLAI+GF LL+FQLSLY + ER+LGPI+V RI+G+L + +L+ YP 
Sbjct: 307 KYGGLGYSTADVGSVLAISGFGLLIFQLSLYSYAERLLGPIIVTRISGILAMVILSCYPL 366

Query: 374 IAMLSGFGLAFLLNCASVVKNLLSVS 399
           IA LSG  L   +N ASV KN+LS S
Sbjct: 367 IAKLSGLALTLAVNSASVAKNVLSTS 392

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30684565|ref|NP_851036.1| zinc induced facilitator-like 1 protein [Arabidopsis thaliana] gi|75249957|sp|Q94BZ1.1|ZIFL1_ARATH RecName: Full=Protein ZINC INDUCED FACILITATOR-LIKE 1; AltName: Full=Protein ZIF-LIKE 1 gi|14517414|gb|AAK62597.1| AT5g13750/MXE10_2 [Arabidopsis thaliana] gi|17065582|gb|AAL32945.1| transporter-like protein [Arabidopsis thaliana] gi|20857393|gb|AAM26717.1| AT5g13750/MXE10_2 [Arabidopsis thaliana] gi|332004552|gb|AED91935.1| zinc induced facilitator-like 1 protein [Arabidopsis thaliana]

 Score =  544 bits (1401), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 264/384 (68%), Positives = 311/384 (80%), Gaps = 3/384 (0%)

Query: 16  EKRYYENCPGCKVDQLKDTKSGLPITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAK 75
           EK ++E+C GCKVDQ+K  + G P  ELF++WIIVLCTALPISSLFPFLYFMI DF IAK
Sbjct: 11  EKNFHEDCSGCKVDQMKRLRRGFPFWELFTVWIIVLCTALPISSLFPFLYFMIDDFNIAK 70

Query: 76  REEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNF 135
           +EEDIG YAG+VG SFM GRA TSV WGLVADRYGRKPVI++GTASVV+FNTLFGLS+NF
Sbjct: 71  KEEDIGFYAGFVGCSFMLGRAFTSVAWGLVADRYGRKPVILIGTASVVVFNTLFGLSLNF 130

Query: 136 WMAVLTRFLLGSLNGLLGPIKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQ 195
           WMA++TRF LGS NGLLGPIKAYA EIFR+E+Q L LS VSTAWGIGLIIGPA+GGFLAQ
Sbjct: 131 WMAIITRFCLGSFNGLLGPIKAYAMEIFRDEYQGLALSAVSTAWGIGLIIGPAIGGFLAQ 190

Query: 196 PAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSYD 255
           PA++YP+LFS +S+FGKFP+FLPCL IS+FAF VTI +  +PETLH H  +DD    SYD
Sbjct: 191 PAKQYPSLFSQDSIFGKFPFFLPCLAISVFAFLVTIVSSRIPETLHNHKFNDDE---SYD 247

Query: 256 ALESASAEVKEEEGREATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKL 315
           AL+  S + +  +  E   K SLL NWPL+SSIIVYCVFSLHDMAY+EIFSLWANSP+K 
Sbjct: 248 ALKDLSDDPESNKVAERNGKSSLLNNWPLISSIIVYCVFSLHDMAYTEIFSLWANSPRKY 307

Query: 316 GGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIA 375
           GGL YST  VG VLA +GF LL+FQLSLY + ER+LGPI+V RI+G L + +L+ YP IA
Sbjct: 308 GGLGYSTADVGSVLAFSGFGLLIFQLSLYSYAERLLGPIIVTRISGSLAMVVLSCYPLIA 367

Query: 376 MLSGFGLAFLLNCASVVKNLLSVS 399
            LSG  L   +  ASV K++L  S
Sbjct: 368 KLSGLALTVTVTSASVAKSVLGTS 391

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|79327804|ref|NP_001031877.1| zinc induced facilitator-like 1 protein [Arabidopsis thaliana] gi|332004554|gb|AED91937.1| zinc induced facilitator-like 1 protein [Arabidopsis thaliana]

 Score =  543 bits (1398), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 264/384 (68%), Positives = 311/384 (80%), Gaps = 3/384 (0%)

Query: 16  EKRYYENCPGCKVDQLKDTKSGLPITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAK 75
           EK ++E+C GCKVDQ+K  + G P  ELF++WIIVLCTALPISSLFPFLYFMI DF IAK
Sbjct: 11  EKNFHEDCSGCKVDQMKRLRRGFPFWELFTVWIIVLCTALPISSLFPFLYFMIDDFNIAK 70

Query: 76  REEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNF 135
           +EEDIG YAG+VG SFM GRA TSV WGLVADRYGRKPVI++GTASVV+FNTLFGLS+NF
Sbjct: 71  KEEDIGFYAGFVGCSFMLGRAFTSVAWGLVADRYGRKPVILIGTASVVVFNTLFGLSLNF 130

Query: 136 WMAVLTRFLLGSLNGLLGPIKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQ 195
           WMA++TRF LGS NGLLGPIKAYA EIFR+E+Q L LS VSTAWGIGLIIGPA+GGFLAQ
Sbjct: 131 WMAIITRFCLGSFNGLLGPIKAYAMEIFRDEYQGLALSAVSTAWGIGLIIGPAIGGFLAQ 190

Query: 196 PAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSYD 255
           PA++YP+LFS +S+FGKFP+FLPCL IS+FAF VTI +  +PETLH H  +DD    SYD
Sbjct: 191 PAKQYPSLFSQDSIFGKFPFFLPCLAISVFAFLVTIVSSRIPETLHNHKFNDDE---SYD 247

Query: 256 ALESASAEVKEEEGREATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKL 315
           AL+  S + +  +  E   K SLL NWPL+SSIIVYCVFSLHDMAY+EIFSLWANSP+K 
Sbjct: 248 ALKDLSDDPESNKVAERNGKSSLLNNWPLISSIIVYCVFSLHDMAYTEIFSLWANSPRKY 307

Query: 316 GGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIA 375
           GGL YST  VG VLA +GF LL+FQLSLY + ER+LGPI+V RI+G L + +L+ YP IA
Sbjct: 308 GGLGYSTADVGSVLAFSGFGLLIFQLSLYSYAERLLGPIIVTRISGSLAMVVLSCYPLIA 367

Query: 376 MLSGFGLAFLLNCASVVKNLLSVS 399
            LSG  L   +  ASV K++L  S
Sbjct: 368 KLSGLALTVTVTSASVAKSVLGTS 391

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|227202678|dbj|BAH56812.1| AT5G13750 [Arabidopsis thaliana]

 Score =  542 bits (1396), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 265/384 (69%), Positives = 312/384 (81%), Gaps = 3/384 (0%)

Query: 16  EKRYYENCPGCKVDQLKDTKSGLPITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAK 75
           EK ++E+C GCKVDQ+K  + G P  ELF++WIIVLCTALPISSLFPFLYFMI DF IAK
Sbjct: 11  EKNFHEDCSGCKVDQMKRLRRGFPFWELFTVWIIVLCTALPISSLFPFLYFMIDDFNIAK 70

Query: 76  REEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNF 135
           +EEDIG YAG+VG SFM GRA TSV WGLVADRYGRKPVI++GTASVV+FNTLFGLS+NF
Sbjct: 71  KEEDIGFYAGFVGCSFMLGRAFTSVAWGLVADRYGRKPVILIGTASVVVFNTLFGLSLNF 130

Query: 136 WMAVLTRFLLGSLNGLLGPIKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQ 195
           WMA++TRF LGS NGLLGPIKAYA EIFR+E+Q L LS VSTAWGIGLIIGPA+GGFLAQ
Sbjct: 131 WMAIITRFCLGSFNGLLGPIKAYAMEIFRDEYQGLALSAVSTAWGIGLIIGPAIGGFLAQ 190

Query: 196 PAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSYD 255
           PA++YP+LFS +S+FGKFP+FLPCL IS+FAF VTI +  +PETLH H  +DD    SYD
Sbjct: 191 PAKQYPSLFSQDSIFGKFPFFLPCLAISVFAFLVTIVSSRIPETLHNHKFNDDE---SYD 247

Query: 256 ALESASAEVKEEEGREATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKL 315
           AL+  S + +  +  E   K SLL NWPL+SSIIVYCVFSLHDMAY+EIFSLWANSP+K 
Sbjct: 248 ALKDLSDDPESNKVAERNGKSSLLNNWPLISSIIVYCVFSLHDMAYTEIFSLWANSPRKY 307

Query: 316 GGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIA 375
           GGL YST  VG VLA +GF LL+FQLSLY + ER+LGPI+V RI+G L + +L+ YP IA
Sbjct: 308 GGLGYSTADVGSVLAFSGFGLLIFQLSLYSYAERLLGPIIVTRISGSLAMVVLSCYPLIA 367

Query: 376 MLSGFGLAFLLNCASVVKNLLSVS 399
            LSG  L   +  ASV K++L VS
Sbjct: 368 KLSGLALTVTVISASVAKSVLGVS 391

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359481459|ref|XP_003632620.1| PREDICTED: protein ZINC INDUCED FACILITATOR-LIKE 1-like [Vitis vinifera] gi|297741718|emb|CBI32850.3| unnamed protein product [Vitis vinifera]

 Score =  536 bits (1382), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 268/398 (67%), Positives = 324/398 (81%), Gaps = 5/398 (1%)

Query: 7   KLREPFLKNEK-RYYENCPGCKVDQLKDTKSGLPITELFSIWIIVLCTALPISSLFPFLY 65
           K RE  LK E   Y E+CPGCK+D LK++  G+P   LF +WI+VLC ALPISSLFPFLY
Sbjct: 3   KNREALLKKEVWEYDESCPGCKIDHLKESNPGIPFKLLFYVWIVVLCAALPISSLFPFLY 62

Query: 66  FMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIF 125
           FMI+DF IAKREEDIG YAGYVGSSFMFGRALTSV WG+VADRYGRKPVI  G  +++IF
Sbjct: 63  FMIRDFHIAKREEDIGFYAGYVGSSFMFGRALTSVIWGMVADRYGRKPVITAGLIALIIF 122

Query: 126 NTLFGLSVNFWMAVLTRFLLGSLNGLLGPIKAYACEIFREEHQALGLSTVSTAWGIGLII 185
           NTLFGLS N WMA+ TRFLLGS  G+LGP++AYA E+ R+E+QALG+S +STAWGIGL+I
Sbjct: 123 NTLFGLSTNVWMALSTRFLLGSFCGILGPMRAYASEVCRKEYQALGMSIISTAWGIGLVI 182

Query: 186 GPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHND 245
           GPALGGFLAQPAEK+P++FS ESLFG+FPYFLPCL IS FA GV++  +WLPETLH H +
Sbjct: 183 GPALGGFLAQPAEKFPHIFSKESLFGRFPYFLPCLLISTFALGVSVLCYWLPETLHIHKE 242

Query: 246 DDDSCDVSYDALESASAEVKEE----EGREATPKKSLLKNWPLMSSIIVYCVFSLHDMAY 301
           + +  ++    + +   +VKE+    EG+    ++SLLKNWPLMSSIIVYCVF LHDMAY
Sbjct: 243 NKEQDELYAWEVAAYGCDVKEKLKKFEGKGPNQQQSLLKNWPLMSSIIVYCVFQLHDMAY 302

Query: 302 SEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAG 361
           +EIFSLWA SP + GGL+YST  VGEVLA++G  LL+FQL LYP LERILGP+MV+RI  
Sbjct: 303 AEIFSLWAISPSEYGGLSYSTADVGEVLAMSGLGLLLFQLFLYPPLERILGPVMVSRIGA 362

Query: 362 VLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVS 399
           VLT+PLL+SYP IAMLSG GL+ L+NCAS++KN+L VS
Sbjct: 363 VLTVPLLSSYPLIAMLSGVGLSLLINCASLLKNVLCVS 400

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	399
TAIR|locus:2177105	478	ZIFL1 "zinc induced facilitato	0.954	0.797	0.632	2e-127
TAIR|locus:2173254	486	ZIF1 "zinc induced facilitator	0.984	0.808	0.580	3.6e-121
TAIR|locus:2101109	484	ZIFL2 "AT3G43790" [Arabidopsis	0.947	0.780	0.569	9.7e-112
ASPGD|ASPL0000053890	591	AN0890 [Emericella nidulans (t	0.511	0.345	0.344	1.7e-40
CGD|CAL0004954	546	orf19.3432 [Candida albicans (	0.360	0.263	0.386	1.5e-33
DICTYBASE|DDB_G0269964	665	DDB_G0269964 "Uncharacterized	0.523	0.314	0.309	1.1e-32
CGD|CAL0002781	633	orf19.4550 [Candida albicans (	0.360	0.227	0.379	1.3e-32
DICTYBASE|DDB_G0282945	669	DDB_G0282945 [Dictyostelium di	0.528	0.315	0.297	1.9e-32
SGD|S000000617	611	YCR023C "Vacuolar membrane pro	0.521	0.340	0.297	6.9e-28
ASPGD|ASPL0000051539	480	AN1423 [Emericella nidulans (t	0.388	0.322	0.354	1.4e-27

TAIR|locus:2177105 ZIFL1 "zinc induced facilitator-like 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 1251 (445.4 bits), Expect = 2.0e-127, P = 2.0e-127
 Identities = 243/384 (63%), Positives = 288/384 (75%)

Query:    16 EKRYYENCPGCKVDQLKDTKSGLPITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAK 75
             EK ++E+C GCKVDQ+K  + G P  ELF++WIIVLCTALPISSLFPFLYFMI DF IAK
Sbjct:    11 EKNFHEDCSGCKVDQMKRLRRGFPFWELFTVWIIVLCTALPISSLFPFLYFMIDDFNIAK 70

Query:    76 REEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNF 135
             +EEDIG YAG+VG SFM GRA TSV WGLVADRYGRKPVI++GTASVV+FNTLFGLS+NF
Sbjct:    71 KEEDIGFYAGFVGCSFMLGRAFTSVAWGLVADRYGRKPVILIGTASVVVFNTLFGLSLNF 130

Query:   136 WMAVLTRFLLGSLNGLLGPIKAYACEIFREEHQALGLSTVSTXXXXXXXXXXXXXXXXXQ 195
             WMA++TRF LGS NGLLGPIKAYA EIFR+E+Q L LS VST                 Q
Sbjct:   131 WMAIITRFCLGSFNGLLGPIKAYAMEIFRDEYQGLALSAVSTAWGIGLIIGPAIGGFLAQ 190

Query:   196 PAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNXXXXXXXXXXX 255
             PA++YP+LFS +S+FGKFP+FLPCL IS+FAF VTI +  +PETLH H            
Sbjct:   191 PAKQYPSLFSQDSIFGKFPFFLPCLAISVFAFLVTIVSSRIPETLHNHKFNDDESYD--- 247

Query:   256 ALESASAEVKEEEGREATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKL 315
             AL+  S + +  +  E   K SLL NWPL+SSIIVYCVFSLHDMAY+EIFSLWANSP+K 
Sbjct:   248 ALKDLSDDPESNKVAERNGKSSLLNNWPLISSIIVYCVFSLHDMAYTEIFSLWANSPRKY 307

Query:   316 GGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIA 375
             GGL YST  VG VLA +GF LL+FQLSLY + ER+LGPI+V RI+G L + +L+ YP IA
Sbjct:   308 GGLGYSTADVGSVLAFSGFGLLIFQLSLYSYAERLLGPIIVTRISGSLAMVVLSCYPLIA 367

Query:   376 MLSGFGLAFLLNCASVVKNLLSVS 399
              LSG  L   +  ASV K++L  S
Sbjct:   368 KLSGLALTVTVTSASVAKSVLGTS 391

GO:0005215 "transporter activity" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0080167 "response to karrikin" evidence=IEP

TAIR|locus:2173254 ZIF1 "zinc induced facilitator 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 1192 (424.7 bits), Expect = 3.6e-121, P = 3.6e-121
 Identities = 231/398 (58%), Positives = 284/398 (71%)

Query:     6 EKLREPFLKNEKRYYENCPGCKVDQLKDTKSGLPITELFSIWIIVLCTALPISSLFPFLY 65
             E+ +E  L+ +  Y++ CPGCKV+Q+K  + G P  EL  +WIIVL T+LPISSL+PFLY
Sbjct:     3 EEYKEALLEKQN-YHDGCPGCKVEQMKQLRRGYPYLELSFVWIIVLSTSLPISSLYPFLY 61

Query:    66 FMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIF 125
             +MI+DF +AK E+DIG YAG+VG SFM GRALTSVFWG+VADRYGRKP+I++GT S+ IF
Sbjct:    62 YMIEDFGVAKTEKDIGFYAGFVGCSFMLGRALTSVFWGIVADRYGRKPIILLGTISIAIF 121

Query:   126 NTLFGLSVNFWMAVLTRFLLGSLNGLLGPIKAYACEIFREEHQALGLSTVSTXXXXXXXX 185
             N LFGLS NFWMA+ TRFLLGS N LLG +KAYA EIFR+E+QA  +S VST        
Sbjct:   122 NALFGLSSNFWMAIGTRFLLGSFNCLLGTMKAYASEIFRDEYQATAMSAVSTAWGIGLII 181

Query:   186 XXXXXXXXXQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNX 245
                      QPA+KYPN+FS ESLFG+F Y LPC  IS FA  VT+   ++PETLH H  
Sbjct:   182 GPALGGFLAQPADKYPNVFSQESLFGRFRYALPCFTISAFALLVTVLCCFIPETLHNHKL 241

Query:   246 XXXXXXXXXXALESASAEVKEEEGR----EATPKKSLLKNWPLMSSIIVYCVFSLHDMAY 301
                        LE+AS E     G+    E    +SLLKNWPLMSSIIVYCV  LHD AY
Sbjct:   242 DSLSHDDSYDILEAASHESSPSTGKAGKNERKASQSLLKNWPLMSSIIVYCVLCLHDTAY 301

Query:   302 SEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAG 361
             SEIF+LWANSP+K GGL+YST  VG VLAI+G  L  FQ+ +YP  E++LGP++V R AG
Sbjct:   302 SEIFALWANSPRKYGGLSYSTNEVGTVLAISGLGLFSFQVFVYPLAEKLLGPVLVTRYAG 361

Query:   362 VLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVS 399
              L IP+  SYP+IA LSG  L+ +LNCAS++ N+LSVS
Sbjct:   362 ALMIPIQMSYPFIAGLSGLSLSLMLNCASILINVLSVS 399

GO:0005215 "transporter activity" evidence=IEA

GO:0005351 "sugar:hydrogen symporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM;IEA

GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0009624 "response to nematode" evidence=IEP

GO:0009705 "plant-type vacuole membrane" evidence=IDA

GO:0010043 "response to zinc ion" evidence=IEP

GO:0055069 "zinc ion homeostasis" evidence=IMP

TAIR|locus:2101109 ZIFL2 "AT3G43790" [Arabidopsis thaliana (taxid:3702)]

 Score = 1103 (393.3 bits), Expect = 9.7e-112, P = 9.7e-112
 Identities = 216/379 (56%), Positives = 273/379 (72%)

Query:    21 ENCPGCKVDQLKDTKSGLPITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDI 80
             E+CPGC +D+ K  + G+P   L  IW++ LCTALPISSLFP++YFMI+DF IAK+EEDI
Sbjct:    15 EDCPGCIIDRTKQQQRGVPYLHLSFIWLVSLCTALPISSLFPYIYFMIRDFHIAKQEEDI 74

Query:    81 GSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVL 140
             G YAG+VGSSFM GRALTS+FWG +ADRYGRKP+I++GT SV+IFNTLFGLS +FW+A+ 
Sbjct:    75 GFYAGFVGSSFMIGRALTSIFWGKLADRYGRKPIILIGTFSVIIFNTLFGLSTSFWLAIS 134

Query:   141 TRFLLGSLNGLLGPIKAYACEIFREEHQALGLSTVSTXXXXXXXXXXXXXXXXXQPAEKY 200
              RFLLG  N LLG I+AYA E+  EE+ AL LS VST                 QPAEKY
Sbjct:   135 VRFLLGCFNCLLGVIRAYASEVVSEEYNALSLSVVSTSRGIGLILGPAIGGYLAQPAEKY 194

Query:   201 PNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNXXXXXXXXXXXALESA 260
             PN+FS  S+FG+FPYFLP L IS++A  V IA +WLPETLH                +  
Sbjct:   195 PNIFSQSSVFGRFPYFLPSLVISVYATAVLIACWWLPETLHTRCRIAQGRLNPTELNDDE 254

Query:   261 SAEVKEEEGREATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNY 320
             S     +E ++   K SLL+N PLM+ IIVYCVFSL ++AY+EIFSLWA S +  GGL++
Sbjct:   255 SRGGGLDE-QKIINKPSLLRNRPLMAIIIVYCVFSLQEIAYNEIFSLWAVSDRSYGGLSF 313

Query:   321 STQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIAMLSGF 380
             S+Q VGEVLAI+G  LLVFQL +YP LE+ +G + V R++ VL IPLL+ YPYIA+LSG 
Sbjct:   314 SSQDVGEVLAISGLGLLVFQLLVYPPLEKSVGLLAVIRLSAVLLIPLLSCYPYIALLSGV 373

Query:   381 GLAFLLNCASVVKNLLSVS 399
              L  ++NCAS++KN LS+S
Sbjct:   374 TLHLVINCASIIKNALSIS 392

GO:0005351 "sugar:hydrogen symporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0009624 "response to nematode" evidence=IEP

ASPGD|ASPL0000053890 AN0890 [Emericella nidulans (taxid:162425)]

 Score = 342 (125.4 bits), Expect = 1.7e-40, Sum P(2) = 1.7e-40
 Identities = 71/206 (34%), Positives = 106/206 (51%)

Query:    36 SGLPITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGR 95
             S  PI +LF + +  +C  +   S+FP++Y M++ F +   +  I  YAG + SSF F  
Sbjct:    21 SAFPIRQLFVLALCRICEPIAFMSIFPYVYHMVESFHVTSNDRKIALYAGLITSSFTFAE 80

Query:    96 ALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI 155
                 +FWG ++D+ GRKPV+IMG     I   +FG + N   A++ R L G LNG +G +
Sbjct:    81 FSAGMFWGRMSDKIGRKPVLIMGLVGTAISMVVFGFAPNLATAMIARALGGLLNGNIGVL 140

Query:   156 KAYACEIFR-EEHQALGLSTVSTXXXXXXXXXXXXXXXXXQPAEKYPNLFSSESLFGKFP 214
             +    EI   +EHQ    S +                   QP + YP LFS ES+F KFP
Sbjct:   141 QTTVAEIVTVKEHQPRAYSIMPFVWCLGSIIGPAMGGALSQPCDNYPWLFSGESIFKKFP 200

Query:   215 YFLPCL-CISLFAFGVTIAAFWLPET 239
             + LP L C+ +   G+ +   +L ET
Sbjct:   201 FLLPNLVCVVVLMTGIVVGLLFLEET 226

GO:0003674 "molecular_function" evidence=ND

GO:0055085 "transmembrane transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0000329 "fungal-type vacuole membrane" evidence=IEA

CGD|CAL0004954 orf19.3432 [Candida albicans (taxid:5476)]

 Score = 275 (101.9 bits), Expect = 1.5e-33, Sum P(3) = 1.5e-33
 Identities = 56/145 (38%), Positives = 89/145 (61%)

Query:    32 KDTKSGLPITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSF 91
             K++ +  PI ++  I II     L  +S+FP++YFMI+DF IA +EEDI  Y+GY+ SSF
Sbjct:     8 KESLNDFPIRQMIIICIIRFAEPLAFTSIFPYIYFMIRDFHIAIKEEDISQYSGYIASSF 67

Query:    92 MFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGL 151
                + L ++ WG ++++ GRK ++I+G     I   LFG + N++ A++ R L G LNG 
Sbjct:    68 AICQFLFAIHWGTMSEKLGRKLILIIGLLGTSISLLLFGFARNYYWALIARCLAGVLNGN 127

Query:   152 LGPIKAYACEIFREE-HQALGLSTV 175
             +  ++    EI  E+ HQ L  ST+
Sbjct:   128 VAVLRTMIGEIAVEKRHQPLAFSTM 152

GO:0015238 "drug transmembrane transporter activity" evidence=ISS

GO:0015893 "drug transport" evidence=ISS

GO:0016020 "membrane" evidence=ISS

DICTYBASE|DDB_G0269964 DDB_G0269964 "Uncharacterized membrane protein YCR023C" [Dictyostelium discoideum (taxid:44689)]

 Score = 282 (104.3 bits), Expect = 1.1e-32, Sum P(2) = 1.1e-32
 Identities = 65/210 (30%), Positives = 102/210 (48%)

Query:    32 KDTKSGLPITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSF 91
             K+  + +P  +L   ++++LC A+  SS F ++   I    +  + E +G YAG++ SSF
Sbjct:     8 KNHVTPMPWKKLIGAYVLLLCEAISTSSFFTYISPFIIFLGVTDKAELVGYYAGFIASSF 67

Query:    92 MFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGL 151
                + L+S FWG +ADR GRKP++I G+   VI     G S +  M +L+R + G LNG 
Sbjct:    68 SAAQFLSSFFWGKMADRLGRKPILIFGSVGSVISLLCIGTSKSLVMLILSRSINGLLNGN 127

Query:   152 LGPIKAYACEIFREEHQALGLSTVSTXXXXXXXXXXXXXXXXXQPAEKYPNLFSSESLFG 211
             +G +K Y  E   + +Q      V                    P +   ++F    LF 
Sbjct:   128 IGVVKTYIGECTDKTNQVEAFGWVGLTWGLGSILGPSIGGLLADPVKNMSSIFKGSKLFE 187

Query:   212 KFPYFLPCLCIS-LFAFGVTIAAFWLPETL 240
              FP+FLP L I+ L   G      ++ ETL
Sbjct:   188 LFPFFLPNLVIAFLTIIGCVFTQLYMKETL 217

GO:0055085 "transmembrane transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005215 "transporter activity" evidence=IEA

CGD|CAL0002781 orf19.4550 [Candida albicans (taxid:5476)]

 Score = 291 (107.5 bits), Expect = 1.3e-32, Sum P(2) = 1.3e-32
 Identities = 55/145 (37%), Positives = 85/145 (58%)

Query:    32 KDTKSGLPITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSF 91
             ++   G P+ ++F I  I     +  +SLFP++YFMI+DF IA    DI  Y+GY+ +SF
Sbjct:    11 REQMKGFPLWQMFVISCIRFSEPIAFTSLFPYVYFMIRDFNIAPHSTDIAKYSGYLSASF 70

Query:    92 MFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGL 151
              F +    V WG  +D+YGRK +++MG     +   +FG S NFW+AV  R L+G LNG 
Sbjct:    71 AFCQFFCCVQWGKASDKYGRKKILLMGLLGTAVSMIIFGFSPNFWVAVFARSLMGCLNGN 130

Query:   152 LGPIKAYACEIF-REEHQALGLSTV 175
             +  ++    EI   + HQ++  ST+
Sbjct:   131 IAVLRTAIGEIATHKNHQSIAFSTL 155

GO:0015238 "drug transmembrane transporter activity" evidence=ISS

GO:0015893 "drug transport" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0000329 "fungal-type vacuole membrane" evidence=IEA

DICTYBASE|DDB_G0282945 DDB_G0282945 [Dictyostelium discoideum (taxid:44689)]

 Score = 282 (104.3 bits), Expect = 1.9e-32, Sum P(2) = 1.9e-32
 Identities = 63/212 (29%), Positives = 109/212 (51%)

Query:    29 DQLKDTKSGLPITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVG 88
             +QL DT + LP+ ++ +I+II+LC A+   S+FP++ F++  F +   +  +G + G + 
Sbjct:    65 NQLDDTITPLPMMKILAIFIIMLCDAINSLSIFPYVNFLVSSFNLTTDKNKLGYFVGILA 124

Query:    89 SSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSL 148
             SS+   + ++S FWG  ++  GR+P +++G    +I  T  G S N+ M V+ RFL G L
Sbjct:   125 SSYYIAQLVSSFFWGWFSNYRGRRPSLLLGLIGSMICLTGVGFSRNYPMVVVFRFLSGLL 184

Query:   149 NGLLGPIKAYACEIFREEHQALGLSTVSTXXXXXXXXXXXXXXXXXQPAEKYPNLFSSES 208
             NG +   K    EI    +QA   S +                      +K+P L    +
Sbjct:   185 NGNVSIAKTMLGEITDSSNQAKAFSFIGLSWGVGGIIAPLIGGFFSNFCKKHPELLGDGN 244

Query:   209 LFGKFPYFLPCLCISLFAF-GVTIAAFWLPET 239
             +F +FPY LP +   LF+  G+ +   +L E+
Sbjct:   245 IFCRFPYLLPNIICVLFSLTGLVLGYVYLQES 276

GO:0055085 "transmembrane transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005215 "transporter activity" evidence=IEA

SGD|S000000617 YCR023C "Vacuolar membrane protein of unknown function" [Saccharomyces cerevisiae (taxid:4932)]

 Score = 274 (101.5 bits), Expect = 6.9e-28, Sum P(2) = 6.9e-28
 Identities = 64/215 (29%), Positives = 107/215 (49%)

Query:    32 KDTKSGLPITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSF 91
             K+   G P  +L  + ++     +  SSLFP++YFM++DF IA  +  +  Y+GY+ SSF
Sbjct:     9 KEQMDGFPWVQLVVVSLVRFSEPIAFSSLFPYVYFMVRDFNIAPNDAQVSKYSGYLSSSF 68

Query:    92 MFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGL 151
                + +++  WG  ++++GRK  +  G     +   + G S NF+ A++ R L+G LNG 
Sbjct:    69 ALCQVISAYHWGRFSEKHGRKITLTCGLIGTSVSLLILGFSRNFYQALVARSLMGLLNGN 128

Query:   152 LGPIKAYACEIFRE-EHQALGLSTVSTXXXXXXXXX---XXXXXXXXQPAEKYPNLFS-- 205
             +G I+    EI  E +HQAL  ST+                          + P  F   
Sbjct:   129 VGVIRTIIGEIATERKHQALAFSTMPLLFQFGAVVGPMIGGFLVFRDGTMNEVPLWFPHF 188

Query:   206 SESLFGKFPYFLPCLCISLFA-FGVTIAAFWLPET 239
             ++ +   +PY LP + + +F  FG+T A  +L ET
Sbjct:   189 AKRIIRSYPYALPNVVVCMFLMFGLTNATLFLEET 223

GO:0016021 "integral to membrane" evidence=ISM;IEA

GO:0000329 "fungal-type vacuole membrane" evidence=IDA

GO:0016020 "membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

ASPGD|ASPL0000051539 AN1423 [Emericella nidulans (taxid:162425)]

 Score = 259 (96.2 bits), Expect = 1.4e-27, Sum P(2) = 1.4e-27
 Identities = 62/175 (35%), Positives = 94/175 (53%)

Query:    67 MIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFN 126
             M+KDF + +   D   YAG + ++F    A T +FWG ++DR GRKPVII G A  ++  
Sbjct:     1 MVKDFHMGEGS-DASFYAGILVATFSLVEAFTGMFWGALSDRVGRKPVIISGLAGTIVSL 59

Query:   127 TLFGLSVNFWMAVLTRFLLGSLNGLLGPIKAYACEIF-REEHQALGLSTVSTXXXXXXXX 185
              + G + N+W+A+L R L G LNG +G I+    EI  R EH+   +  +          
Sbjct:    60 LIVGFAPNYWVALLGRGLGGLLNGNIGVIQTMVGEIVKRPEHERPAIGGL---------- 109

Query:   186 XXXXXXXXXQPAEKYPNLFSSESLFGKFPYFLP-CLCISLFAFGVTIAAFWLPET 239
                      +PA+ YP++FS + +FG+FPY LP  +C +L    +  A  +L ET
Sbjct:   110 -------LAKPADNYPSVFSRDGIFGRFPYLLPNVVCSTLLLGSILFAWAFLQET 157

GO:0055085 "transmembrane transport" evidence=IEA

GO:0005215 "transporter activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q94BZ1	ZIFL1_ARATH	No assigned EC number	0.6875	0.9548	0.7970	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00033971001	SubName- Full=Chromosome undetermined scaffold_71, whole genome shotgun sequence; (488 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00036173001	SubName- Full=Chromosome chr3 scaffold_8, whole genome shotgun sequence; (439 aa)			•						0.459
	GSVIVG00015514001	SubName- Full=Chromosome chr18 scaffold_1, whole genome shotgun sequence; (456 aa)			•						0.434

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	399
pfam07690	346	pfam07690, MFS_1, Major Facilitator Superfamily	4e-21
cd06174	352	cd06174, MFS, The Major Facilitator Superfamily (M	2e-18
TIGR00880	141	TIGR00880, 2_A_01_02, Multidrug resistance protein	1e-12
TIGR00895	398	TIGR00895, 2A0115, benzoate transport	5e-12
PRK09874	408	PRK09874, PRK09874, drug efflux system protein Mdt	3e-11
COG2814	394	COG2814, AraJ, Arabinose efflux permease [Carbohyd	1e-10
cd06174	352	cd06174, MFS, The Major Facilitator Superfamily (M	1e-08
TIGR00898	505	TIGR00898, 2A0119, cation transport protein	3e-08
PRK12307	426	PRK12307, PRK12307, putative sialic acid transport	6e-08
pfam00083	449	pfam00083, Sugar_tr, Sugar (and other) transporter	2e-07
PRK11102	377	PRK11102, PRK11102, bicyclomycin/multidrug efflux	9e-07
pfam07690	346	pfam07690, MFS_1, Major Facilitator Superfamily	1e-05
TIGR00900	365	TIGR00900, 2A0121, H+ Antiporter protein	2e-05
PRK08633	1146	PRK08633, PRK08633, 2-acyl-glycerophospho-ethanola	6e-05
PRK10473	392	PRK10473, PRK10473, multidrug efflux system protei	7e-05
TIGR00895	398	TIGR00895, 2A0115, benzoate transport	1e-04
PRK11551	406	PRK11551, PRK11551, putative 3-hydroxyphenylpropio	4e-04
PRK11043	401	PRK11043, PRK11043, putative transporter; Provisio	5e-04
TIGR01299	742	TIGR01299, synapt_SV2, synaptic vesicle protein SV	0.002
COG0738	422	COG0738, FucP, Fucose permease [Carbohydrate trans	0.002
TIGR00879	481	TIGR00879, SP, MFS transporter, sugar porter (SP)	0.003
PRK10489	417	PRK10489, PRK10489, enterobactin exporter EntS; Pr	0.004

>gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily

 Score = 92.9 bits (231), Expect = 4e-21
 Identities = 70/343 (20%), Positives = 123/343 (35%), Gaps = 46/343 (13%)

Query: 46  IWIIVLCTALPISSLFPFL-YFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGL 104
           +++      L  S L P L  ++ +D  I+       +  G + ++F  G AL     G 
Sbjct: 1   LFLAAFLAGLGRSLLGPALPLYLAEDLGISP------TEIGLLLTAFSLGYALAQPLAGR 54

Query: 105 VADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGP-IKAYACEIF 163
           ++DR+GR+ V+++G     +   L   + + W+ ++ R L G   G L P   A   + F
Sbjct: 55  LSDRFGRRRVLLIGLLLFALGLLLLLFASSLWLLLVLRVLQGLGGGALFPAAAALIADWF 114

Query: 164 REEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCIS 223
             E +   L  +S  +G+G  +GP LGG LA             SLFG    FL    ++
Sbjct: 115 PPEERGRALGLLSAGFGLGAALGPLLGGLLA-------------SLFGWRAAFLILAILA 161

Query: 224 LFAFGVTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKNWP 283
           L A  +       P    +                      +E         K LL++  
Sbjct: 162 LLAAVLAALLLPRPPPESKRP-----------------KPAEEAPAPLVPAWKLLLRDPV 204

Query: 284 LMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSL 343
           L   + +              F+L    P     L  S  + G +L + G    + +L L
Sbjct: 205 LWLLLALLLFGFA-------FFALLTYLPLYQEVLGLSALLAGLLLGLAGLLGAIGRLLL 257

Query: 344 YPFLERILGPIMVARIAGVLTIPLLTSYPYIAMLSGFGLAFLL 386
               +R+ G      +A +L I        +++        + 
Sbjct: 258 GRLSDRL-GRRRRLLLALLLLILAALGLALLSLTESSLWLLVA 299

Length = 346

>gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

 Score = 85.4 bits (212), Expect = 2e-18
 Identities = 46/154 (29%), Positives = 78/154 (50%), Gaps = 7/154 (4%)

Query: 43  LFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFW 102
           L  +++    + L    L P L  + +D  ++       S AG + S+F  G AL S+  
Sbjct: 1   LLLLFLGFFLSGLDRGLLSPALPLLAEDLGLSA------SQAGLIVSAFSLGYALGSLLA 54

Query: 103 GLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPIK-AYACE 161
           G ++DR+GR+ V+++G     + + L   + + W+ ++ RFLLG   G L P   A   E
Sbjct: 55  GYLSDRFGRRRVLLLGLLLFALGSLLLAFASSLWLLLVGRFLLGLGGGALYPAAAALIAE 114

Query: 162 IFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQ 195
            F  + +   L   S  +G+G ++GP LGG LA+
Sbjct: 115 WFPPKERGRALGLFSAGFGLGALLGPLLGGLLAE 148

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352

>gnl|CDD|233166 TIGR00880, 2_A_01_02, Multidrug resistance protein

 Score = 64.2 bits (157), Expect = 1e-12
 Identities = 46/152 (30%), Positives = 72/152 (47%), Gaps = 16/152 (10%)

Query: 89  SSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSL 148
           + +  G+ + S   GL+ DR+GRKPV+++G    V+   +F LS N  + ++ RFL G  
Sbjct: 5   AGYALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSSNITVLIIARFLQGFG 64

Query: 149 NGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSE 207
                    A   +I+  E + + L  +S    +G ++GP LGG LAQ            
Sbjct: 65  AAFALVAGAALIADIYPPEERGVALGLMSAGIALGPLLGPPLGGVLAQ-------FLGWR 117

Query: 208 SLFGKFPYFLPCLCISLFAFGVTIAAFWLPET 239
           + F     FL  L ++ F     + AF LPET
Sbjct: 118 APF----LFLAILALAAFI----LLAFLLPET 141

Length = 141

>gnl|CDD|233175 TIGR00895, 2A0115, benzoate transport

 Score = 66.6 bits (163), Expect = 5e-12
 Identities = 31/111 (27%), Positives = 55/111 (49%), Gaps = 1/111 (0%)

Query: 84  AGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRF 143
            G++ S+ + G A  ++F+G +ADR GR+ V++       +F  L  L+ N    ++ RF
Sbjct: 54  LGFLFSAGLIGMAFGALFFGPLADRIGRRRVLLWSILLFSVFTLLCALATNVTQLLILRF 113

Query: 144 LLG-SLNGLLGPIKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFL 193
           L G  L GL+  + A   E   +  +   +  +   + IG  +G  L G+L
Sbjct: 114 LAGLGLGGLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWL 164

[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 398

>gnl|CDD|182127 PRK09874, PRK09874, drug efflux system protein MdtG; Provisional

 Score = 64.2 bits (156), Expect = 3e-11
 Identities = 52/180 (28%), Positives = 79/180 (43%), Gaps = 9/180 (5%)

Query: 47  WIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGS-SFMFGRALTSVFWGLV 105
           W+    T    S + PFL   ++   +      +  ++G V S +F+F  A+ S FWG +
Sbjct: 20  WLGCFLTGAAFSLVMPFLPLYVEQLGVTGHSA-LNMWSGLVFSITFLFS-AIASPFWGGL 77

Query: 106 ADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPIKAYACEIFRE 165
           ADR GRK +++     + I   L GL+ N W  ++ R LLG L G +    A        
Sbjct: 78  ADRKGRKIMLLRSALGMGIVMVLMGLAQNIWQFLILRALLGLLGGFVPNANALIATQVPR 137

Query: 166 EHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLF 225
                 L T+ST    G ++GP  GG LA      P  F + S+         C  ++LF
Sbjct: 138 NKSGWALGTLSTGGVSGALLGPLAGGLLADSYGLRPVFFITASV------LFLCFLVTLF 191

Length = 408

>gnl|CDD|225371 COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism]

 Score = 62.2 bits (152), Expect = 1e-10
 Identities = 62/316 (19%), Positives = 110/316 (34%), Gaps = 52/316 (16%)

Query: 84  AGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRF 143
           AG + +++  G AL +    L+  R  R+ +++   A  ++ N L  L+ +F + +L R 
Sbjct: 50  AGQLITAYALGVALGAPLLALLTGRLERRRLLLGLLALFIVSNLLSALAPSFAVLLLARA 109

Query: 144 LLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPN 202
           L G  +G+   I  A A  +     +   L+ V T   +  ++G  LG FL Q       
Sbjct: 110 LAGLAHGVFWSIAAALAARLVPPGKRGRALALVFTGLTLATVLGVPLGTFLGQ------- 162

Query: 203 LFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSYDALESASA 262
                 LFG    FL    ++L A    +    LP                        +
Sbjct: 163 ------LFGWRATFLAIAVLALLAL--LLLWKLLPP-----------------------S 191

Query: 263 EVKEEEGREATPKKSLLKNWPLMSSIIVY-CVFSLHDMAYSEIFSLWANSPKKLGGLNYS 321
           E+             LL+   ++  ++      + H   Y+ I       P       +S
Sbjct: 192 EISGSLPGPLRTLLRLLRRPGVLLGLLATFLFMTGHFALYTYI------RPFLESVAGFS 245

Query: 322 TQMVGEVLAITGF-----SLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIAM 376
              V  VL   G      +LL  +L+      R L   ++     +L +    + P +A+
Sbjct: 246 VSAVSLVLLAFGIAGFIGNLLGGRLADR-GPRRALIAALLLLALALLALTFTGASPALAL 304

Query: 377 LSGFGLAFLLNCASVV 392
              F   F  + A   
Sbjct: 305 ALLFLWGFAFSPALQG 320

Length = 394

>gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

 Score = 55.8 bits (135), Expect = 1e-08
 Identities = 34/155 (21%), Positives = 63/155 (40%), Gaps = 4/155 (2%)

Query: 43  LFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFW 102
           L  + ++ L   L     +  L ++    Q         + AG + S F  G  L ++  
Sbjct: 174 LRLLLLLALAFFLLSFGYYGLLTYLPLYLQEVLGLSA--AEAGLLLSLFGLGGILGALLG 231

Query: 103 GLVADRYGRKPVIIM-GTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLL-GPIKAYAC 160
           GL++DR GR+ ++++ G     +   L  L+ +  + ++   LLG   G     +   A 
Sbjct: 232 GLLSDRLGRRRLLLLIGLLLAALGLLLLALAPSLALLLVALLLLGFGLGFAFPALLTLAS 291

Query: 161 EIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQ 195
           E+   E +       +T   +G  +GP L G L  
Sbjct: 292 ELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLD 326

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352

>gnl|CDD|233176 TIGR00898, 2A0119, cation transport protein

 Score = 55.0 bits (133), Expect = 3e-08
 Identities = 19/58 (32%), Positives = 32/58 (55%)

Query: 89  SSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLG 146
           S F  G  L S  +G ++DR+GRK V+++ T    +   L   S N+ + ++ R L+G
Sbjct: 134 SCFFVGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAFSPNYTVFLVFRLLVG 191

[Transport and binding proteins, Cations and iron carrying compounds]. Length = 505

>gnl|CDD|237051 PRK12307, PRK12307, putative sialic acid transporter; Provisional

 Score = 53.8 bits (129), Expect = 6e-08
 Identities = 39/159 (24%), Positives = 72/159 (45%), Gaps = 10/159 (6%)

Query: 43  LFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFW 102
           LFS W+  +        +F  +Y +  D  +   E        ++ ++   GR      +
Sbjct: 20  LFSAWLGYVFDGFDFMLIFYIMYLIKADLGLTDME------GAFLATAAFIGRPFGGALF 73

Query: 103 GLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLG-SLNGLLGPIKAYACE 161
           GL+AD++GRKP+++    +  +   L GL+    M  L+RF++G  + G       YA E
Sbjct: 74  GLLADKFGRKPLMMWSIVAYSVGTGLSGLASGVIMLTLSRFIVGMGMAGEYACASTYAVE 133

Query: 162 IFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKY 200
            + +  ++   + + + +GIG II      F+   AE Y
Sbjct: 134 SWPKHLKSKASAFLVSGFGIGNIIAAY---FMPSFAEAY 169

Length = 426

>gnl|CDD|215702 pfam00083, Sugar_tr, Sugar (and other) transporter

 Score = 52.3 bits (126), Expect = 2e-07
 Identities = 24/94 (25%), Positives = 44/94 (46%), Gaps = 4/94 (4%)

Query: 57  ISSLFPFLYFMIKDFQIAKREEDIGS--YAGYVGSSFMFGRALTSVFWGLVADRYGRKPV 114
           I +    + F  +   +        S   +G + S F  G  + S+F G + DR+GRK  
Sbjct: 19  IGAFLTLIKFFKRFGALTSIGACAASTVLSGLIVSIFSVGCLIGSLFAGKLGDRFGRKKS 78

Query: 115 IIMGTASVVIFNTLFGLSV--NFWMAVLTRFLLG 146
           +++G    VI   L G +   +F+M ++ R ++G
Sbjct: 79  LLIGNVLFVIGALLQGFAKGKSFYMLIVGRVIVG 112

Length = 449

>gnl|CDD|182964 PRK11102, PRK11102, bicyclomycin/multidrug efflux system; Provisional

 Score = 50.3 bits (121), Expect = 9e-07
 Identities = 49/182 (26%), Positives = 78/182 (42%), Gaps = 32/182 (17%)

Query: 72  QIAKREEDIGSYAGYVG---SSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTL 128
            IA    D G  AG V    S+++ G A+  +F+G +AD +GRKPVI+ GT    +    
Sbjct: 16  VIAA---DFGVSAGSVQMTLSAYILGFAIGQLFYGPMADSFGRKPVILGGTLVFALAAVA 72

Query: 129 FGLSVNFWMAVLTRFLLGSLNGLLGP-----IKAYACEIFREEHQALGLSTVSTAWGIGL 183
             L+      +  RF    L+GL        I A   ++F +E  +  +S V+    I  
Sbjct: 73  CALAQTIDQLIYMRF----LHGLAAAAASVVINALMRDMFPKEEFSRMMSFVTLVMTIAP 128

Query: 184 IIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWL-PETLHR 242
           ++ P +GG+L          FS  ++F           ++L A       F+  PETL +
Sbjct: 129 LLAPIIGGWLL-------VWFSWHAIF---------WVLALAAILAAALVFFFIPETLPK 172

Query: 243 HN 244
             
Sbjct: 173 ER 174

Length = 377

>gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily

 Score = 46.6 bits (111), Expect = 1e-05
 Identities = 26/148 (17%), Positives = 59/148 (39%), Gaps = 10/148 (6%)

Query: 44  FSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWG 103
             + + +L       +L  +L    +   ++         AG +        A+  +  G
Sbjct: 205 LWLLLALLLFGFAFFALLTYLPLYQEVLGLSA------LLAGLLLGLAGLLGAIGRLLLG 258

Query: 104 LVADRYGRKPVIIMGTASVVIFN---TLFGLSVNFWMAVLTRFLLGSLNGLLGP-IKAYA 159
            ++DR GR+  +++    +++      L  L+ +    ++   LLG   GL+ P + A  
Sbjct: 259 RLSDRLGRRRRLLLALLLLILAALGLALLSLTESSLWLLVALLLLGFGAGLVFPALNALV 318

Query: 160 CEIFREEHQALGLSTVSTAWGIGLIIGP 187
            ++  +E +       +TA  +G  +GP
Sbjct: 319 SDLAPKEERGTASGLYNTAGSLGGALGP 346

Length = 346

>gnl|CDD|162098 TIGR00900, 2A0121, H+ Antiporter protein

 Score = 46.2 bits (110), Expect = 2e-05
 Identities = 28/123 (22%), Positives = 45/123 (36%), Gaps = 10/123 (8%)

Query: 81  GSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVII-------MGTASVVIFNTLFGLSV 133
            S       + M    + S   G +ADRY RK V+I       +  A +     L GL++
Sbjct: 33  ASVLSLAALAGMLPYVVLSPIAGALADRYDRKKVMIGADLIRAVLVAVLPFVALLGGLNI 92

Query: 134 NFWMAVLTRFLLGSLNGLLGP-IKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGF 192
             W   +   +L        P  +A   ++  EE      S       +  I+GP +GG 
Sbjct: 93  --WQVYVLAGILAIAQAFFTPAYQAMLPDLVPEEQLTQANSLSQAVRSLFYIVGPGIGGL 150

Query: 193 LAQ 195
           +  
Sbjct: 151 MYA 153

[Transport and binding proteins, Cations and iron carrying compounds]. Length = 365

>gnl|CDD|236315 PRK08633, PRK08633, 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

 Score = 44.9 bits (107), Expect = 6e-05
 Identities = 32/147 (21%), Positives = 59/147 (40%), Gaps = 10/147 (6%)

Query: 97  LTSVFWGLVADRYGRKPVI-IMGTASVVI--FNTLFGLSVNFWMAVLTRFLLGSLNGLLG 153
           L S   G +AD++ +  VI I+    V +     L      FW+A    FLLG+ + +  
Sbjct: 62  LLSSPAGFLADKFSKNRVIRIVKLFEVGLTLLIVLAYYLGWFWLAFAVTFLLGAQSAIYS 121

Query: 154 PIKA-YACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGK 212
           P K     E+  +E+ +     +     + ++ G AL  FL +         ++ S    
Sbjct: 122 PAKYGIIPELVGKENLSRANGLLEAFTIVAILAGTALFSFLFE--SVNG---NTPSEILG 176

Query: 213 FPYFLPCLCISLFAFGVTIAAFWLPET 239
                  + +++   G  I A+ LP+ 
Sbjct: 177 RIAPAGLVLLAVAVLG-LIFAYRLPKV 202

Length = 1146

>gnl|CDD|182486 PRK10473, PRK10473, multidrug efflux system protein MdtL; Provisional

 Score = 44.2 bits (105), Expect = 7e-05
 Identities = 23/59 (38%), Positives = 32/59 (54%)

Query: 89  SSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGS 147
           S ++ G A   +F G +ADR GRKPV I G A  +I + L  L+    + +  RFL G 
Sbjct: 45  SVYLAGMAAAMLFAGKIADRSGRKPVAIPGAALFIIASLLCSLAETSSLFLAGRFLQGI 103

Length = 392

>gnl|CDD|233175 TIGR00895, 2A0115, benzoate transport

 Score = 43.9 bits (104), Expect = 1e-04
 Identities = 34/120 (28%), Positives = 55/120 (45%), Gaps = 13/120 (10%)

Query: 82  SYAGYVGSSFMFGRALTSVFWGLVADRYGRKPV----IIMGTASVVIFNTLFGLSVNFWM 137
           S A   G+ F FG  + S+ +G +ADR G +      ++    +V++ +TLF  ++   +
Sbjct: 285 SLAATGGALFNFGGVIGSIIFGWLADRLGPRVTALLLLLGAVFAVLVGSTLFSPTLLLLL 344

Query: 138 AVLTRFLLGSLNGLLGPIKAYACEIFREEHQALGLSTVSTAWGIG---LIIGPALGGFLA 194
             +  F    +NG    + A     +    +A G   V  A GIG    IIGP L G+L 
Sbjct: 345 GAIAGFF---VNGGQSGLYALMALFYPTAIRATG---VGWAIGIGRLGAIIGPILAGYLL 398

[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 398

>gnl|CDD|236927 PRK11551, PRK11551, putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

 Score = 41.9 bits (99), Expect = 4e-04
 Identities = 17/62 (27%), Positives = 32/62 (51%)

Query: 85  GYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFL 144
           G+  S+ + G    ++  G +ADR GRK ++I+  A   +F+     + +F   ++ R L
Sbjct: 53  GWAFSAGILGLLPGALLGGRLADRIGRKRILIVSVALFGLFSLATAQAWDFPSLLVARLL 112

Query: 145 LG 146
            G
Sbjct: 113 TG 114

Length = 406

>gnl|CDD|182924 PRK11043, PRK11043, putative transporter; Provisional

 Score = 41.8 bits (99), Expect = 5e-04
 Identities = 19/45 (42%), Positives = 29/45 (64%), Gaps = 3/45 (6%)

Query: 77  EEDIGSYAGYVGSS---FMFGRALTSVFWGLVADRYGRKPVIIMG 118
           + D+ + A  V +S   F+ G AL  + WG ++DRYGRKPV++ G
Sbjct: 33  QADLQTSASAVSASLSLFLAGFALGQLLWGPLSDRYGRKPVLLAG 77

Length = 401

>gnl|CDD|130366 TIGR01299, synapt_SV2, synaptic vesicle protein SV2

 Score = 40.3 bits (94), Expect = 0.002
 Identities = 33/125 (26%), Positives = 54/125 (43%), Gaps = 8/125 (6%)

Query: 71  FQIAKREEDI---GSYAGYVGSSFMFGRALTSVFWGLVADRYGRKP--VIIMGTASVVIF 125
           F +   E+D+    S  G +G     G  + + FWG +AD+ GRK   +I +       F
Sbjct: 188 FVLPSAEKDLCIPDSGKGMLGLIVYLGMMVGAFFWGGLADKLGRKQCLLICLSVNGFFAF 247

Query: 126 NTLFGLSVNFWMAVLTRFLLG-SLNGLLGPIKAYACEIFREEHQALGLSTVSTAWGIGLI 184
            + F     F++    R L G  + G +  + +Y  E   +E +   LS +   W IG I
Sbjct: 248 FSSFVQGYGFFL--FCRLLSGFGIGGAIPIVFSYFAEFLAQEKRGEHLSWLCMFWMIGGI 305

Query: 185 IGPAL 189
              A+
Sbjct: 306 YAAAM 310

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by PFAM model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. Length = 742

>gnl|CDD|223809 COG0738, FucP, Fucose permease [Carbohydrate transport and metabolism]

 Score = 40.0 bits (94), Expect = 0.002
 Identities = 41/158 (25%), Positives = 65/158 (41%), Gaps = 16/158 (10%)

Query: 40  ITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTS 99
           +T LF +W  + C       L P L    + F +   E      A  +  +F  G  + S
Sbjct: 18  LTSLFFLWGFITCL---NDILIPHL---KEVFDLTYFE------ASLIQFAFFGGYFIMS 65

Query: 100 VFWGLVADRYGRKPVIIMGTASVVIFNTLFG---LSVNFWMAVLTRFLLGSLNGLL-GPI 155
           +  GL+  + G K  I++G     +   LF     S ++   ++  F+L S  GLL    
Sbjct: 66  LPAGLLIKKLGYKAGIVLGLLLYAVGAALFWPAASSKSYGFFLVALFILASGIGLLETAA 125

Query: 156 KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFL 193
             Y   + + E  A  L+      G+G I+GP LG  L
Sbjct: 126 NPYVTLLGKPESAAFRLNLAQAFNGLGAILGPLLGSSL 163

Length = 422

>gnl|CDD|233165 TIGR00879, SP, MFS transporter, sugar porter (SP) family

 Score = 39.2 bits (92), Expect = 0.003
 Identities = 25/93 (26%), Positives = 41/93 (44%), Gaps = 4/93 (4%)

Query: 57  ISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVII 116
           I        F    F  A  +    S  G V S F+ G  + ++F G ++DR+GRK  ++
Sbjct: 47  IGGALALPAFE-FKFTSANSDSYSSSLWGLVVSIFLVGGFIGALFAGWLSDRFGRKKSLL 105

Query: 117 MGTASVV---IFNTLFGLSVNFWMAVLTRFLLG 146
           +     V   I   L   +++  M ++ R LLG
Sbjct: 106 IIALLFVIGAILMGLAAFALSVEMLIVGRVLLG 138

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 481

>gnl|CDD|236700 PRK10489, PRK10489, enterobactin exporter EntS; Provisional

 Score = 38.8 bits (91), Expect = 0.004
 Identities = 36/125 (28%), Positives = 63/125 (50%), Gaps = 23/125 (18%)

Query: 88  GSSFMFGRALT----SVFWGL-----VADRYGRKPVIIMGTASVVIFNTLFGLSVNFWM- 137
           GS+   G ++T    ++F GL     +ADRY RK +I++   +  +     GL++N ++ 
Sbjct: 49  GSTLQVGLSVTLTGGAMFIGLMVGGVLADRYDRKKLILLARGTCGLG--FIGLALNAFLP 106

Query: 138 --AVLTRFLLGSLNGLLGPIKAYACE------IFREE-HQALGLSTVSTAWGIGLIIGPA 188
             ++L  +LLG  +G  G +   A        + RE   QA  ++ ++    +G +I PA
Sbjct: 107 EPSLLAIYLLGLWDGFFGSLGVTALLAATPALVGRENLMQAGAITMLTVR--LGSVISPA 164

Query: 189 LGGFL 193
           LGG L
Sbjct: 165 LGGLL 169

Length = 417

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	399
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	100.0
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	99.98
PRK14995	495	methyl viologen resistance protein SmvA; Provision	99.98
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	99.97
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	99.97
PRK03545	390	putative arabinose transporter; Provisional	99.97
PRK10406	432	alpha-ketoglutarate transporter; Provisional	99.97
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	99.97
PRK10213	394	nepI ribonucleoside transporter; Reviewed	99.97
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	99.97
PRK11663	434	regulatory protein UhpC; Provisional	99.97
PRK10133	438	L-fucose transporter; Provisional	99.97
TIGR00891	405	2A0112 putative sialic acid transporter.	99.97
PRK10091	382	MFS transport protein AraJ; Provisional	99.97
PRK12307	426	putative sialic acid transporter; Provisional	99.97
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	99.97
TIGR00893	399	2A0114 d-galactonate transporter.	99.96
PLN00028	476	nitrate transmembrane transporter; Provisional	99.96
TIGR00900	365	2A0121 H+ Antiporter protein.	99.96
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	99.96
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	99.96
PRK09705	393	cynX putative cyanate transporter; Provisional	99.96
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	99.96
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	99.96
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	99.96
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	99.96
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	99.96
PRK10642	490	proline/glycine betaine transporter; Provisional	99.96
PRK03699	394	putative transporter; Provisional	99.96
PRK10504	471	putative transporter; Provisional	99.96
PRK15403	413	multidrug efflux system protein MdtM; Provisional	99.96
PRK10473	392	multidrug efflux system protein MdtL; Provisional	99.96
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	99.96
COG2223	417	NarK Nitrate/nitrite transporter [Inorganic ion tr	99.96
PRK11195	393	lysophospholipid transporter LplT; Provisional	99.96
PRK15075	434	citrate-proton symporter; Provisional	99.95
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	99.95
KOG2615	451	consensus Permease of the major facilitator superf	99.95
PRK03633	381	putative MFS family transporter protein; Provision	99.95
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	99.95
PRK09952	438	shikimate transporter; Provisional	99.95
PRK10077	479	xylE D-xylose transporter XylE; Provisional	99.95
PRK03893	496	putative sialic acid transporter; Provisional	99.95
PRK11043	401	putative transporter; Provisional	99.95
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	99.95
TIGR00895	398	2A0115 benzoate transport.	99.95
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	99.95
TIGR00805	633	oat sodium-independent organic anion transporter.	99.95
PRK05122	399	major facilitator superfamily transporter; Provisi	99.95
TIGR00897	402	2A0118 polyol permease family. This family of prot	99.95
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	99.95
KOG1330	493	consensus Sugar transporter/spinster transmembrane	99.95
TIGR00892	455	2A0113 monocarboxylate transporter 1.	99.95
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	99.95
PRK11652	394	emrD multidrug resistance protein D; Provisional	99.95
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	99.94
PRK12382	392	putative transporter; Provisional	99.94
PRK09874	408	drug efflux system protein MdtG; Provisional	99.94
TIGR00896	355	CynX cyanate transporter. This family of proteins	99.94
PRK11646	400	multidrug resistance protein MdtH; Provisional	99.94
PRK10054	395	putative transporter; Provisional	99.94
TIGR00898	505	2A0119 cation transport protein.	99.94
PRK10489	417	enterobactin exporter EntS; Provisional	99.94
KOG2532	466	consensus Permease of the major facilitator superf	99.94
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	99.94
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	99.94
KOG2533	495	consensus Permease of the major facilitator superf	99.93
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	99.93
KOG3764	464	consensus Vesicular amine transporter [Intracellul	99.93
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	99.93
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	99.93
KOG0569	485	consensus Permease of the major facilitator superf	99.93
TIGR00901	356	2A0125 AmpG-related permease.	99.92
PRK11902	402	ampG muropeptide transporter; Reviewed	99.92
PRK11010	491	ampG muropeptide transporter; Validated	99.92
PRK15011	393	sugar efflux transporter B; Provisional	99.92
COG0738	422	FucP Fucose permease [Carbohydrate transport and m	99.91
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	99.91
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	99.91
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	99.9
KOG0254	513	consensus Predicted transporter (major facilitator	99.9
KOG2504	509	consensus Monocarboxylate transporter [Carbohydrat	99.9
PF06609	599	TRI12: Fungal trichothecene efflux pump (TRI12); I	99.9
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	99.9
PRK09528	420	lacY galactoside permease; Reviewed	99.89
PRK10207	489	dipeptide/tripeptide permease B; Provisional	99.88
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	99.88
TIGR00806	511	rfc RFC reduced folate carrier. Proteins of the RF	99.87
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	99.87
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	99.87
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	99.87
COG2807	395	CynX Cyanate permease [Inorganic ion transport and	99.85
KOG0255	521	consensus Synaptic vesicle transporter SVOP and re	99.85
KOG0253	528	consensus Synaptic vesicle transporter SV2 (major	99.83
PF00083	451	Sugar_tr: Sugar (and other) transporter; InterPro:	99.82
TIGR01301	477	GPH_sucrose GPH family sucrose/H+ symporter. This	99.81
KOG0252	538	consensus Inorganic phosphate transporter [Inorgan	99.8
PRK09669	444	putative symporter YagG; Provisional	99.8
PRK09584	500	tppB putative tripeptide transporter permease; Rev	99.8
PF13347	428	MFS_2: MFS/sugar transport protein	99.79
PRK10429	473	melibiose:sodium symporter; Provisional	99.78
KOG2325	488	consensus Predicted transporter/transmembrane prot	99.77
PF03825	400	Nuc_H_symport: Nucleoside H+ symporter	99.77
PTZ00207	591	hypothetical protein; Provisional	99.77
PRK15462	493	dipeptide/tripeptide permease D; Provisional	99.75
PRK09848	448	glucuronide transporter; Provisional	99.74
PF01306	412	LacY_symp: LacY proton/sugar symporter; InterPro:	99.72
COG2211	467	MelB Na+/melibiose symporter and related transport	99.72
PRK11462	460	putative transporter; Provisional	99.72
PF03137	539	OATP: Organic Anion Transporter Polypeptide (OATP)	99.71
TIGR00788	468	fbt folate/biopterin transporter. The only functio	99.71
KOG3626	735	consensus Organic anion transporter [Secondary met	99.7
TIGR01272	310	gluP glucose/galactose transporter. Disruption of	99.69
KOG2563	480	consensus Permease of the major facilitator superf	99.66
KOG2816	463	consensus Predicted transporter ADD1 (major facili	99.65
KOG4686	459	consensus Predicted sugar transporter [Carbohydrat	99.65
PRK10642	490	proline/glycine betaine transporter; Provisional	99.63
PF03209	403	PUCC: PUCC protein; InterPro: IPR004896 This prote	99.61
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	99.61
PF05631	354	DUF791: Protein of unknown function (DUF791); Inte	99.61
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	99.6
PRK15011	393	sugar efflux transporter B; Provisional	99.58
TIGR00880	141	2_A_01_02 Multidrug resistance protein.	99.57
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	99.57
PRK05122	399	major facilitator superfamily transporter; Provisi	99.56
PF11700	477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	99.56
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	99.55
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	99.54
COG3104	498	PTR2 Dipeptide/tripeptide permease [Amino acid tra	99.54
PRK09528	420	lacY galactoside permease; Reviewed	99.53
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	99.52
PRK10489	417	enterobactin exporter EntS; Provisional	99.52
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	99.51
PRK09705	393	cynX putative cyanate transporter; Provisional	99.51
TIGR00892	455	2A0113 monocarboxylate transporter 1.	99.5
PRK12382	392	putative transporter; Provisional	99.49
PRK03633	381	putative MFS family transporter protein; Provision	99.49
PRK09874	408	drug efflux system protein MdtG; Provisional	99.48
TIGR00897	402	2A0118 polyol permease family. This family of prot	99.47
TIGR00893	399	2A0114 d-galactonate transporter.	99.46
PRK03545	390	putative arabinose transporter; Provisional	99.45
PRK03699	394	putative transporter; Provisional	99.45
PRK03893	496	putative sialic acid transporter; Provisional	99.45
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	99.43
PRK09952	438	shikimate transporter; Provisional	99.43
COG2270	438	Permeases of the major facilitator superfamily [Ge	99.42
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	99.4
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	99.4
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	99.39
TIGR00895	398	2A0115 benzoate transport.	99.37
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	99.37
PRK11663	434	regulatory protein UhpC; Provisional	99.36
TIGR00891	405	2A0112 putative sialic acid transporter.	99.35
TIGR00900	365	2A0121 H+ Antiporter protein.	99.35
PRK12307	426	putative sialic acid transporter; Provisional	99.35
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	99.34
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	99.31
PRK10504	471	putative transporter; Provisional	99.31
KOG0569	485	consensus Permease of the major facilitator superf	99.31
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	99.3
PF11700	477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	99.3
PRK11010	491	ampG muropeptide transporter; Validated	99.28
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	99.28
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	99.28
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	99.27
PRK10077	479	xylE D-xylose transporter XylE; Provisional	99.27
PLN00028	476	nitrate transmembrane transporter; Provisional	99.27
TIGR00898	505	2A0119 cation transport protein.	99.26
PRK15075	434	citrate-proton symporter; Provisional	99.25
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	99.25
TIGR00896	355	CynX cyanate transporter. This family of proteins	99.25
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	99.23
PF01770	412	Folate_carrier: Reduced folate carrier; InterPro:	99.22
PRK10406	432	alpha-ketoglutarate transporter; Provisional	99.22
KOG0637	498	consensus Sucrose transporter and related proteins	99.22
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	99.22
PF03825	400	Nuc_H_symport: Nucleoside H+ symporter	99.21
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	99.21
PRK10054	395	putative transporter; Provisional	99.21
PRK10213	394	nepI ribonucleoside transporter; Reviewed	99.2
KOG4686	459	consensus Predicted sugar transporter [Carbohydrat	99.18
KOG0253	528	consensus Synaptic vesicle transporter SV2 (major	99.18
KOG2504	509	consensus Monocarboxylate transporter [Carbohydrat	99.17
PF06813	250	Nodulin-like: Nodulin-like; InterPro: IPR010658 Th	99.17
PRK10091	382	MFS transport protein AraJ; Provisional	99.17
TIGR01272	310	gluP glucose/galactose transporter. Disruption of	99.16
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	99.14
PRK11646	400	multidrug resistance protein MdtH; Provisional	99.14
COG2270	438	Permeases of the major facilitator superfamily [Ge	99.13
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	99.12
COG2223	417	NarK Nitrate/nitrite transporter [Inorganic ion tr	99.12
PRK11902	402	ampG muropeptide transporter; Reviewed	99.12
PF03092	433	BT1: BT1 family; InterPro: IPR004324 Members of th	99.12
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	99.08
PF01306	412	LacY_symp: LacY proton/sugar symporter; InterPro:	99.05
TIGR00901	356	2A0125 AmpG-related permease.	99.05
PF13347	428	MFS_2: MFS/sugar transport protein	99.04
PRK10473	392	multidrug efflux system protein MdtL; Provisional	99.04
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	99.04
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	99.03
PRK14995	495	methyl viologen resistance protein SmvA; Provision	99.02
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	99.01
TIGR00926	654	2A1704 Peptide:H+ symporter (also transports b-lac	98.99
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	98.99
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	98.97
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	98.97
PRK11043	401	putative transporter; Provisional	98.96
PRK11195	393	lysophospholipid transporter LplT; Provisional	98.96
PRK09848	448	glucuronide transporter; Provisional	98.95
PF06963	432	FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi	98.94
PRK10429	473	melibiose:sodium symporter; Provisional	98.94
PRK10133	438	L-fucose transporter; Provisional	98.92
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	98.91
PRK09669	444	putative symporter YagG; Provisional	98.89
TIGR00788	468	fbt folate/biopterin transporter. The only functio	98.86
KOG2532	466	consensus Permease of the major facilitator superf	98.85
KOG0252	538	consensus Inorganic phosphate transporter [Inorgan	98.82
COG0477	338	ProP Permeases of the major facilitator superfamil	98.8
KOG3762	618	consensus Predicted transporter [General function	98.76
TIGR00769	472	AAA ADP/ATP carrier protein family. These proteins	98.76
COG2807	395	CynX Cyanate permease [Inorganic ion transport and	98.74
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	98.73
PRK11652	394	emrD multidrug resistance protein D; Provisional	98.73
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	98.72
PF00083	451	Sugar_tr: Sugar (and other) transporter; InterPro:	98.71
PRK11462	460	putative transporter; Provisional	98.63
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	98.61
KOG3098	461	consensus Uncharacterized conserved protein [Funct	98.61
COG2211	467	MelB Na+/melibiose symporter and related transport	98.58
KOG3764	464	consensus Vesicular amine transporter [Intracellul	98.53
PF05978	156	UNC-93: Ion channel regulatory protein UNC-93; Int	98.51
PF03209	403	PUCC: PUCC protein; InterPro: IPR004896 This prote	98.5
COG0738	422	FucP Fucose permease [Carbohydrate transport and m	98.48
PRK15403	413	multidrug efflux system protein MdtM; Provisional	98.47
PF06779	85	DUF1228: Protein of unknown function (DUF1228); In	98.47
PF02487	402	CLN3: CLN3 protein; InterPro: IPR003492 Batten's d	98.41
PRK09584	500	tppB putative tripeptide transporter permease; Rev	98.4
KOG0254	513	consensus Predicted transporter (major facilitator	98.39
PF12832	77	MFS_1_like: MFS_1 like family	98.36
KOG4332	454	consensus Predicted sugar transporter [Carbohydrat	98.33
PRK10207	489	dipeptide/tripeptide permease B; Provisional	98.31
PTZ00207	591	hypothetical protein; Provisional	98.3
TIGR01301	477	GPH_sucrose GPH family sucrose/H+ symporter. This	98.2
KOG2533	495	consensus Permease of the major facilitator superf	98.19
KOG3574	510	consensus Acetyl-CoA transporter [Inorganic ion tr	98.18
PF03219	491	TLC: TLC ATP/ADP transporter; InterPro: IPR004667	98.07
KOG2615	451	consensus Permease of the major facilitator superf	98.03
KOG2816	463	consensus Predicted transporter ADD1 (major facili	97.99
PF06609	599	TRI12: Fungal trichothecene efflux pump (TRI12); I	97.89
PF12832	77	MFS_1_like: MFS_1 like family	97.89
KOG0255	521	consensus Synaptic vesicle transporter SVOP and re	97.87
KOG3810	433	consensus Micronutrient transporters (folate trans	97.85
COG3202	509	ATP/ADP translocase [Energy production and convers	97.72
PRK15462	493	dipeptide/tripeptide permease D; Provisional	97.64
PF00854	372	PTR2: POT family; InterPro: IPR000109 This entry r	97.46
PF13000	544	Acatn: Acetyl-coenzyme A transporter 1; InterPro:	97.42
COG3104	498	PTR2 Dipeptide/tripeptide permease [Amino acid tra	97.39
PF02487	402	CLN3: CLN3 protein; InterPro: IPR003492 Batten's d	97.26
PF03092	433	BT1: BT1 family; InterPro: IPR004324 Members of th	97.26
KOG1330	493	consensus Sugar transporter/spinster transmembrane	97.26
KOG2563	480	consensus Permease of the major facilitator superf	97.04
TIGR00806	511	rfc RFC reduced folate carrier. Proteins of the RF	96.97
KOG1237	571	consensus H+/oligopeptide symporter [Amino acid tr	96.89
PF06963	432	FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi	96.82
KOG3762	618	consensus Predicted transporter [General function	96.69
PF06779	85	DUF1228: Protein of unknown function (DUF1228); In	96.63
KOG2325	488	consensus Predicted transporter/transmembrane prot	96.59
KOG3097	390	consensus Predicted membrane protein [Function unk	96.53
PRK03612	521	spermidine synthase; Provisional	96.28
KOG3098	461	consensus Uncharacterized conserved protein [Funct	95.98
PF05631	354	DUF791: Protein of unknown function (DUF791); Inte	95.95
TIGR00939	437	2a57 Equilibrative Nucleoside Transporter (ENT).	95.95
PF03137	539	OATP: Organic Anion Transporter Polypeptide (OATP)	95.6
KOG1479	406	consensus Nucleoside transporter [Nucleotide trans	95.48
PF07672	267	MFS_Mycoplasma: Mycoplasma MFS transporter; InterP	95.46
TIGR00939	437	2a57 Equilibrative Nucleoside Transporter (ENT).	95.42
TIGR00805	633	oat sodium-independent organic anion transporter.	94.72
KOG4830	412	consensus Predicted sugar transporter [Carbohydrat	94.26
KOG3880	409	consensus Predicted small molecule transporter inv	94.22
PF01733	309	Nucleoside_tran: Nucleoside transporter; InterPro:	93.89
PF01770	412	Folate_carrier: Reduced folate carrier; InterPro:	93.22
TIGR00880	141	2_A_01_02 Multidrug resistance protein.	92.61
KOG1479	406	consensus Nucleoside transporter [Nucleotide trans	91.29
PF06813	250	Nodulin-like: Nodulin-like; InterPro: IPR010658 Th	90.16
PF13000	544	Acatn: Acetyl-coenzyme A transporter 1; InterPro:	86.44
TIGR00926	654	2A1704 Peptide:H+ symporter (also transports b-lac	86.01
KOG2601	503	consensus Iron transporter [Inorganic ion transpor	85.81
PF07672	267	MFS_Mycoplasma: Mycoplasma MFS transporter; InterP	84.82
TIGR00769	472	AAA ADP/ATP carrier protein family. These proteins	83.3
KOG3880	409	consensus Predicted small molecule transporter inv	80.57

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=100.00  E-value=1.7e-32  Score=244.48  Aligned_cols=289  Identities=20%  Similarity=0.228  Sum_probs=250.4

Q ss_pred             CChhHHHHHHHHHHHhhccccchhhhHHHHHHHhccCccccchhhhhhHHHHHHHHHHHhhhhcccccccccCCchhhHH
Q 015847           38 LPITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIM  117 (399)
Q Consensus        38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~dr~Grr~~l~~  117 (399)
                      ..+..++.+.++.|............+|++.+|+|+|..+      .|+..+.|.++..++.|+...+.||+.||++++.
T Consensus        10 ~~~~~l~aLa~~~F~igttEfv~~gLLp~iA~dl~vs~~~------aG~lis~yAl~~ai~ap~l~~lt~r~~Rr~lLl~   83 (394)
T COG2814          10 PMWLALLALALAAFAIGTTEFVPVGLLPPIAADLGVSEGA------AGQLITAYALGVALGAPLLALLTGRLERRRLLLG   83 (394)
T ss_pred             cchHHHHHHHHHHHHHHhHHHHHHhchHHHHHHcCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHH
Confidence            4456778888899999999999999999999999999999      9999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhccchHHHHHHHHHHHhhhccchhhH-HHHHhhhccchhhhHHHHHHHHHHHHHHhHHHHhhhhhcCC
Q 015847          118 GTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQP  196 (399)
Q Consensus       118 ~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~i~~~l~~~  196 (399)
                      ...++.++++++++++|++.++++|++.|+..|.+.+. .++.++..|+++|++++++...+..++.++|.+++.++.+ 
T Consensus        84 ~l~lFi~~n~l~alAp~f~~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp~~~~~Aiaiv~~G~tlA~v~GvPLGt~ig~-  162 (394)
T COG2814          84 LLALFIVSNLLSALAPSFAVLLLARALAGLAHGVFWSIAAALAARLVPPGKRGRALALVFTGLTLATVLGVPLGTFLGQ-  162 (394)
T ss_pred             HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhhHHHHHHHHHHHHHHHhccHHHHHHH-
Confidence            99999999999999999999999999999999988885 9999999999999999999999999999999999999999 


Q ss_pred             CCCCCCcccccccccCCcchhhHHHHHHHHHHHHHH-HHhcccCCCCCCCCCCccchhhhhhhhhhhhhhhccccCCccc
Q 015847          197 AEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIA-AFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPK  275 (399)
Q Consensus       197 ~~~~~~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~-~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  275 (399)
                            .+|||..|         ...+.++++..+. +..+|  |+..+++.+ .                    +..+.
T Consensus       163 ------~~GWR~~F---------~~ia~l~ll~~~~~~~~lP--~~~~~~~~~-~--------------------~~~~~  204 (394)
T COG2814         163 ------LFGWRATF---------LAIAVLALLALLLLWKLLP--PSEISGSLP-G--------------------PLRTL  204 (394)
T ss_pred             ------HhhHHHHH---------HHHHHHHHHHHHHHHHhCC--CccCCCCCC-c--------------------chhHH
Confidence                  66666665         7777777776554 56677  211111110 0                    11234


Q ss_pred             ccccccchhHHHHHHHHHHHhhhhhHHHHHHHhhcCCcccCccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchh
Q 015847          276 KSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIM  355 (399)
Q Consensus       276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  355 (399)
                      .+.+|+|+++...+..++.....+...+++..++++.     .|++++..++++..++++.++++. +++++.|| +.++
T Consensus       205 ~~~l~~p~v~~~l~~t~l~~~g~F~~ftYi~P~L~~v-----~g~s~~~vs~~Ll~~Gv~~~~Gn~-~gGrl~dr-~~~~  277 (394)
T COG2814         205 LRLLRRPGVLLGLLATFLFMTGHFALYTYIRPFLESV-----AGFSVSAVSLVLLAFGIAGFIGNL-LGGRLADR-GPRR  277 (394)
T ss_pred             HHHhcCchHHHHHHHHHHHHcchhhhHHhHHHHHHHc-----cCCCHhHHHHHHHHHHHHHHHHHH-HHhhhccc-cchh
Confidence            5789999999999999999999999999999888887     899999999999999999999995 99999999 8888


Q ss_pred             HHHHHHHHHHHHHhHHhHHHHHH
Q 015847          356 VARIAGVLTIPLLTSYPYIAMLS  378 (399)
Q Consensus       356 ~~~~~~~~~~~~~~~~~~~~~~~  378 (399)
                      .+.....+.++.++.+.+.....
T Consensus       278 ~l~~~~~l~a~~~l~l~~~~~~~  300 (394)
T COG2814         278 ALIAALLLLALALLALTFTGASP  300 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHhcchH
Confidence            88888788877777776665544

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=99.98  E-value=1e-31  Score=236.08  Aligned_cols=326  Identities=20%  Similarity=0.156  Sum_probs=252.6

Q ss_pred             CCChhHHHHHHHHHHHhhccccchhhhHHHHHHHhccCccccchhhhhhHHHHHHHHHHHhhhhcccccccccCCchhhH
Q 015847           37 GLPITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVII  116 (399)
Q Consensus        37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~dr~Grr~~l~  116 (399)
                      +.+++.++.+++++...++.+..++...|.+.++.++|..|      .|++.+++.+.+.++..+.|.++||.+.|+.+.
T Consensus        25 ~~r~qif~~~fiGYa~fYl~RknF~~a~p~l~e~~~lsk~~------lG~i~s~f~i~YG~sKf~~G~~sDr~npr~fm~   98 (448)
T COG2271          25 RWRIQIFLSIFIGYAAFYLTRKNFNLAMPALIEDGGLSKTQ------LGILGSAFSITYGVSKFVMGVLSDRSNPRYFMA   98 (448)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHhhccHHHHHhcCCCHHH------HHHHHHHHHHHHHHHHHHhhhhcccCCCceeeh
Confidence            34455666788888888999999999999999999999999      999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhccchHHHHHHHHHHHhhhccchhh-HHHHHhhhccchhhhHHHHHHHHHHHHHHhHHHHhh--hhh
Q 015847          117 MGTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGP-IKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALG--GFL  193 (399)
Q Consensus       117 ~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~-~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~i~--~~l  193 (399)
                      +++++.++.+++++++++.+.+.++.+++|..+|...| +...++.|++++|||+..++.+++.++|+.+.|++.  +++
T Consensus        99 ~gLilsai~nil~Gfs~s~~~~~~l~~lng~fQg~Gwpp~~~~i~~Wfsr~eRG~~~siWn~shNiGGal~~~~~~la~~  178 (448)
T COG2271          99 FGLILSAIVNILFGFSPSLFLFAVLWVLNGWFQGMGWPPCARTITHWFSRKERGTWWSIWNTSHNIGGALAPLVALLAFF  178 (448)
T ss_pred             HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHcCccccCceEEEehhhhhcccchHHHHHHHHHH
Confidence            99999999999999999999999999999999999766 699999999999999999999999999999999999  888


Q ss_pred             cCCCCCCCCcccccccccCCcchhhHHHHHHHHHH-HHHHHHhcccCCCCCCCCCCccchhhhhhhhhhhhhhhcc--cc
Q 015847          194 AQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFG-VTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEE--GR  270 (399)
Q Consensus       194 ~~~~~~~~~~~gw~~~f~~~~~~~~~~~~~~~~~~-~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~  270 (399)
                      ..       +.+||..|         ++.++++++ .++.++..+++|+...-++-++-.. +..+.. +++++.+  ..
T Consensus       179 ~~-------~~~w~~~f---------~~pgiiaiival~~~~~~rd~Pqs~GLP~ie~~~~-d~~e~~-~~~~~~~~ls~  240 (448)
T COG2271         179 AF-------HGGWRAAF---------YFPGIIAIIVALILLFLLRDRPQSEGLPPIEEYRG-DPLEIY-EEEKENEGLTA  240 (448)
T ss_pred             Hh-------ccchhHHH---------HHHHHHHHHHHHHHHHHhCCCccccCCCCHHHhhc-Cchhhh-hhhccCCCccH
Confidence            76       44555555         777776665 4555667788776543222111000 111100 0000000  00


Q ss_pred             CCcccccccccchhHHHHHHHHHHHhhhhhHHHHHHHhhcCCcccCccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015847          271 EATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERI  350 (399)
Q Consensus       271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~  350 (399)
                      ...-.+.+++||.+|.+.+..++....-.+...+.|.|+.+.     .|++...++...+.+=.+++.+.+ +.||++||
T Consensus       241 ~~i~~~YVL~Nk~iW~la~a~vfvYivR~gi~dW~p~YL~e~-----k~~s~~~a~~a~~lfE~agl~G~L-l~GwlSDk  314 (448)
T COG2271         241 WQIFVKYVLKNKLIWLLALANVFVYVVRYGINDWGPLYLSEV-----KGFSLVKANWAISLFEVAGLPGTL-LAGWLSDK  314 (448)
T ss_pred             HHHHHHHHHcChHHHHHHHHHHHHHHHHHHHhhhHHHHHHHh-----cCCCHHHHHHHHHHHHHHhhHHHH-HHHHHHHH
Confidence            112345678999999999999999999999999999999997     899999999999999999999995 99999999


Q ss_pred             h--cchhHHHH-HHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHhh
Q 015847          351 L--GPIMVARI-AGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVV  392 (399)
Q Consensus       351 ~--~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  392 (399)
                      +  |||....+ .++...+++..+...+.........+++..++.
T Consensus       315 lfkgrR~p~~~i~~~~i~~~~~~~w~~~~~~~~l~~~~l~~iGf~  359 (448)
T COG2271         315 LFKGRRGPMALIFMLLITASLVLYWLAPNGSYLLDAILLFIIGFL  359 (448)
T ss_pred             hcccccchHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHH
Confidence            5  55555443 344444444444444433334444444444443

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=99.98  E-value=4.4e-30  Score=245.63  Aligned_cols=306  Identities=15%  Similarity=0.116  Sum_probs=239.6

Q ss_pred             hhHHHHHHHHHHHhhccccchhhhHHHHHHHhccCccccchhhhhhHHHHHHHHHHHhhhhcccccccccCCchhhHHHH
Q 015847           40 ITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGT  119 (399)
Q Consensus        40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~  119 (399)
                      +..+..+++..++...+..+++..+|.+.+++|.+..+      .+|+.+++.++..++++++|+++||+|||++++.+.
T Consensus         5 ~~~~~~~~~~~~~~~ld~tiv~~a~p~i~~~l~~s~~~------~~~~~~~~~l~~~~~~~~~G~l~D~~Grk~~l~~~~   78 (495)
T PRK14995          5 WLTLVIIVLVYIPVAIDATVLHVAAPTLSMTLGASGNE------LLWIIDIYSLVMAGMVLPMGALGDRIGFKRLLMLGG   78 (495)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHhH------HHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHH
Confidence            45566788899999999999999999999999999999      999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhccchHHHHHHHHHHHhhhccchhhH-HHHHhhhc-cchhhhHHHHHHHHHHHHHHhHHHHhhhhhcCCC
Q 015847          120 ASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIF-REEHQALGLSTVSTAWGIGLIIGPALGGFLAQPA  197 (399)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~-~~~~~~~~-~~~~r~~~~~~~~~~~~~g~~~~p~i~~~l~~~~  197 (399)
                      ++..++++.+++++|++.++++|+++|++.+...+. ...+.+.+ |+++|++++|+......+|..+||.+++++.+  
T Consensus        79 ~~~~~~~~~~~~a~~~~~li~~r~l~G~g~~~~~~~~~~~l~~~~~~~~~r~~~~g~~~~~~~~g~~~gp~lgg~l~~--  156 (495)
T PRK14995         79 TLFGLASLAAAFSPTASWLIATRALLAIGAAMIVPATLAGIRATFTEEKQRNMALGVWAAVGSGGAAFGPLVGGILLE--  156 (495)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc--
Confidence            999999999999999999999999999998887774 67776665 68999999999999999999999999999998  


Q ss_pred             CCCCCcccccccccCCcchhhHHHHHHHHHHH-HHHHHhcccCCCCCCCCCCccchhh---------hhhhhhhh-----
Q 015847          198 EKYPNLFSSESLFGKFPYFLPCLCISLFAFGV-TIAAFWLPETLHRHNDDDDSCDVSY---------DALESASA-----  262 (399)
Q Consensus       198 ~~~~~~~gw~~~f~~~~~~~~~~~~~~~~~~~-~~~~~~~~e~~~~~~~~~~~~~~~~---------~~~~~~~~-----  262 (399)
                           .+|||+.|         ++...+.++. ++..+.+||++++..++.+......         ...+...+     
T Consensus       157 -----~~gwr~~f---------~i~~~~~~~~~~l~~~~l~~~~~~~~~~~d~~g~~~~~~~~~~l~~~~~~~~~~~~~~  222 (495)
T PRK14995        157 -----HFYWGSVF---------LINVPIVLVVMGLTARYVPRQAGRRDQPLNLGHALMLIVAILLLVYSAKTALKGFLSL  222 (495)
T ss_pred             -----cCChHHHH---------HHHHHHHHHHHHHHHHhCCCCCCCCCCCCChHhHHHHHHHHHHHHHHHHhccccCCch
Confidence                 56676665         5555444443 3345566775433222211111000         00000000     


Q ss_pred             -----------------hhhhccccCCcccccccccchhHHHHHHHHHHHhhhhhHHHHHHHhhcCCcccCccccchhhH
Q 015847          263 -----------------EVKEEEGREATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMV  325 (399)
Q Consensus       263 -----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  325 (399)
                                       ...+.+.+.+....+++|+|.+....+..++......+...++|.|++..     +|+++.++
T Consensus       223 ~~~~~~~~~~~~~l~~f~~~e~~~~~p~~~~~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lq~v-----~g~s~~~a  297 (495)
T PRK14995        223 WVTSLTLLTGALLLGLFIRTQLAASRPMIDMRLFTHRIILSGVVMAMTAMITLVGFELLMAQELQFV-----HGLSPLEA  297 (495)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCCCCcCHHHhCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----cCCCHHHH
Confidence                             00112223344456788999988877777777777777777889888876     79999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHhHHhH
Q 015847          326 GEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPY  373 (399)
Q Consensus       326 g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  373 (399)
                      |..+.+..++..++. ++.+++.||+++|+.+..+.++..++...+..
T Consensus       298 g~~~~~~~~~~~~~~-~~~g~l~~r~g~~~~~~~g~~~~~~~~~~l~~  344 (495)
T PRK14995        298 GMFMLPVMVASGFSG-PIAGILVSRLGLRLVATGGMALSALSFYGLAM  344 (495)
T ss_pred             HHHHHHHHHHHHHHH-HHHHHHHHHcCchHHHHHHHHHHHHHHHHHHH
Confidence            999999999999998 48899999999999888888777776665543

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=99.97  E-value=1.7e-29  Score=236.19  Aligned_cols=307  Identities=14%  Similarity=0.068  Sum_probs=227.8

Q ss_pred             ChhHHHHHHHHHHHhhccccchhhhHHHHHHHhccCccccchhhhhhHHHHHHHHHHHhhhhcccccccccCCchhhHHH
Q 015847           39 PITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMG  118 (399)
Q Consensus        39 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~dr~Grr~~l~~~  118 (399)
                      +++.++.+++.+++++++....+...|.+.+|+|.+..+      .|++.+++.+++.+++++.|+++||+|||+++..+
T Consensus         6 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~l~~~~~~s~~~------~g~~~s~~~~~~~~~~~~~g~l~dr~G~r~~~~~~   79 (412)
T TIGR02332         6 FRRLIIFLFILFIFSFLDRINIGFAGLTMGKDLGLSATM------FGLAATLFYAAYVICGIPSNIMLAIIGARRWIAGI   79 (412)
T ss_pred             hhHHHHHHHHHHHHHHhhhhhHHHHHHhhHhhcCCCHHH------HHHHHHHHHHHHHHHHhhHHHHHHHhChHHHHHHH
Confidence            456667788888899999999999999999999999999      99999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhccchHHHHHHHHHHHhhhccchhhH-HHHHhhhccchhhhHHHHHHHHHHHHHHhHHHHhhhhhcCCC
Q 015847          119 TASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPA  197 (399)
Q Consensus       119 ~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~i~~~l~~~~  197 (399)
                      .++..++.+++++++|++.+++.|++.|++.+...|. ..++.|++|+++|++++++++.+.++|..++|.+++++.+..
T Consensus        80 ~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~  159 (412)
T TIGR02332        80 MVLWGIASTATMFATGPESLYLLRILVGIAEAGFLPGILLYLTFWFPAYFRARANALFMIAMPVTMALGLILSGYILALD  159 (412)
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            9999999999999999999999999999998888775 788999999999999999999999999999999999887411


Q ss_pred             CCCCCcccccccccCCcchhhHHHHHHHHHHH-HHHHHhcccCCCCCCCC-CCccchhhhhhhhhh---hhhhhccccCC
Q 015847          198 EKYPNLFSSESLFGKFPYFLPCLCISLFAFGV-TIAAFWLPETLHRHNDD-DDSCDVSYDALESAS---AEVKEEEGREA  272 (399)
Q Consensus       198 ~~~~~~~gw~~~f~~~~~~~~~~~~~~~~~~~-~~~~~~~~e~~~~~~~~-~~~~~~~~~~~~~~~---~~~~~~~~~~~  272 (399)
                      + ..+..|||+.|         .+.++..++. .+..+++||+|++.+.. +++++...+..+...   ++.++..++.+
T Consensus       160 ~-~~~~~gwr~~f---------~~~~~~~l~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (412)
T TIGR02332       160 G-LMALKGWQWLF---------LLEGFPSVILGVMTWFWLDDSPDKAKWLDEEDKKALKEMIDNDQLTLEQPEGAFAHAA  229 (412)
T ss_pred             C-CCCccchhHHH---------HHHHHHHHHHHHHHhhccCCCcccCCCCCHHHHHHHHHHHHhcccccccccccccccc
Confidence            0 00124555554         7766666554 44456678877542211 111111101111000   00000000000


Q ss_pred             ----cccccccccchhHHHHHHHHHHHhhhhhHHHHHHHhhcCCcccCccccchhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 015847          273 ----TPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLE  348 (399)
Q Consensus       273 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~  348 (399)
                          ..++++ .+|.++...+.+++.......+.+++|.++++.    +.+++..+++.......++.+++.. +.+++.
T Consensus       230 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~----~~~~s~~~~~~~~~~~~l~~~~g~l-~~g~l~  303 (412)
T TIGR02332       230 MPQRSMLREI-FTPAIMLYTLAYFCLTNTLSAINIWTPQILQSF----NQGSSNIMIGLLAAIPQFCTIFGMI-WWSRHS  303 (412)
T ss_pred             ccHHHHHHHh-cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----CCCCcHHHhHHHhhHHHHHHHHHHH-HHHHHh
Confidence                112233 357788878888887778888889999998762    1467788889999999999999984 899999


Q ss_pred             HHhcchhH-HHHHHHHHHHH
Q 015847          349 RILGPIMV-ARIAGVLTIPL  367 (399)
Q Consensus       349 ~~~~~~~~-~~~~~~~~~~~  367 (399)
                      ||+++|+. ......+..++
T Consensus       304 dr~~~r~~~~~~~~~~~~~~  323 (412)
T TIGR02332       304 DRLKERKHHTALPYLFAAAG  323 (412)
T ss_pred             cccCccHHHHHHHHHHHHHH
Confidence            99987664 33333333333

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=99.97  E-value=1.6e-30  Score=247.33  Aligned_cols=297  Identities=13%  Similarity=0.060  Sum_probs=216.5

Q ss_pred             HHHHHHHHHHhhccccchhhhHHHHHHHhccCccccchhhhhhHHHHHHHHHHHhhhhcccccccccCCchhhHHHHHHH
Q 015847           43 LFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASV  122 (399)
Q Consensus        43 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~  122 (399)
                      +....+.++..+.+...+.+..|.+.+++|.+..+      .|++.+++.+++.+++++.|+++||+|||+++..+.+++
T Consensus        31 ~~~~~~~~~~~y~~r~~~~~~~~~i~~~~~~s~~~------~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~  104 (467)
T PRK09556         31 YLVVFIGYLTMYLIRKNFKAAQNDMISTYGLSTTE------LGMIGLGFSITYGVGKTLVGYYADGKNTKQFLPFLLILS  104 (467)
T ss_pred             HHHHHHHHHHHHHHhcChhhhhHHHHHhcCCCHHH------HHHHHHHHHHHHHHHHhhhhhHhhccCccchHHHHHHHH
Confidence            33566677777888999999999999999999999      999999999999999999999999999999998888887


Q ss_pred             HHHHHHHhc-----cchHHHHHHHHHHHhhhccchhhH-HHHHhhhccchhhhHHHHHHHHHHHHHHhHHHHhhhhhcCC
Q 015847          123 VIFNTLFGL-----SVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQP  196 (399)
Q Consensus       123 ~~~~~~~~~-----~~~~~~l~~~r~l~G~~~~~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~i~~~l~~~  196 (399)
                      ++..++.++     +++++.+++.|++.|++.+...|. .++++|++|+++||+++|+...+.++|.++++.++.++.+.
T Consensus       105 ~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~rg~a~gi~~~~~~lG~~l~~~i~~~~~~~  184 (467)
T PRK09556        105 AICMLGFGASLGSGSVSLGLMIALWALSGFFQSTGGPCSYSTITRWTPRRKRGRFLGFWNISHNLGGAGAGGVALWGANY  184 (467)
T ss_pred             HHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhccchHHHHHHHHHcCccceeeeEEeeecccchhhhHHHHHHHHHHHh
Confidence            777665554     689999999999999998887775 89999999999999999999999999999999998776641


Q ss_pred             CCCCCCcccccccccCCcchhhHHHHHHHHHHH-HHHHHhcccCCCCCCCCCCccchhhhhhhhhhhhhhhccccCCc-c
Q 015847          197 AEKYPNLFSSESLFGKFPYFLPCLCISLFAFGV-TIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREAT-P  274 (399)
Q Consensus       197 ~~~~~~~~gw~~~f~~~~~~~~~~~~~~~~~~~-~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~  274 (399)
                      ..    ..+||.         .+.+.+++.++. ++.+++.+++|++....++++ ...+..+...+..++++..... .
T Consensus       185 ~~----~~~~~~---------~f~~~g~~~~~~~i~~~~~~~~~p~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~  250 (467)
T PRK09556        185 FF----DGHVIG---------MFIFPSIIALIIGFIGLRYGSDSPEELGWGKAEE-IFGEPISEEDKETESTDMTKWQIF  250 (467)
T ss_pred             hc----cCcchh---------HHHHHHHHHHHHHHHHHHhCCCChhhcCCCChhh-cccCccchhhhccccccCcHHHHH
Confidence            00    012433         335555554443 333444565543322111100 0000000000000000000001 1


Q ss_pred             cccccccchhHHHHHHHHHHHhhhhhHHHHHHHhhcCCcccCccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcch
Q 015847          275 KKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPI  354 (399)
Q Consensus       275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~  354 (399)
                      .+..+++|.+|...+..++......+...++|.|+.+.     +|+++.+++...+...++.+++. ++.++++||+++|
T Consensus       251 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~yl~~~-----~g~s~~~a~~~~~~~~~~~~ig~-~~~G~lsDr~g~r  324 (467)
T PRK09556        251 VEYVLKNPVIWLLCFANIFLYIVRIGIDNWSPVYAFQE-----LGFSKEDAINTFTLFEIGALVGS-LLWGWLSDLANGR  324 (467)
T ss_pred             HHHHHcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-----cCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHCCC
Confidence            12367899999988888888877778888999998776     89999999999998899999998 4999999999988


Q ss_pred             hHHHHHHHHHH
Q 015847          355 MVARIAGVLTI  365 (399)
Q Consensus       355 ~~~~~~~~~~~  365 (399)
                      +..........
T Consensus       325 ~~~~~~~~~~~  335 (467)
T PRK09556        325 RALVACIALAL  335 (467)
T ss_pred             chHHHHHHHHH
Confidence            87665544333

>PRK03545 putative arabinose transporter; Provisional

Probab=99.97  E-value=5e-29  Score=231.90  Aligned_cols=275  Identities=16%  Similarity=0.158  Sum_probs=209.8

Q ss_pred             hhHHHHHHHHHHHhhccccchhhhHHHHHHHhccCccccchhhhhhHHHHHHHHHHHhhhhcccccccccCCchhhHHHH
Q 015847           40 ITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGT  119 (399)
Q Consensus        40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~  119 (399)
                      +..++.+.+..+..........+.+|.+.+++|.++.+      .++..+.+.+++.+++++.|+++||+|||+++..+.
T Consensus         8 ~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~------~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~   81 (390)
T PRK03545          8 WLRVVTLALAAFIFNTTEFVPVGLLSDIAQSFHMQTAQ------VGLMLTIYAWVVALMSLPLMLLTSNVERRKLLIGLF   81 (390)
T ss_pred             hHHHHHHHHHHHHHHhHHHHHHcchHHHHhHcCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHH
Confidence            33444445555554444445667789999999999999      999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhccchHHHHHHHHHHHhhhccchhhH-HHHHhhhccchhhhHHHHHHHHHHHHHHhHHHHhhhhhcCCCC
Q 015847          120 ASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAE  198 (399)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~i~~~l~~~~~  198 (399)
                      ++.+++++.+++++|++.+++.|+++|++.+...+. .+++.|++|+++|++++|+...+.++|..++|++++.+.+   
T Consensus        82 ~~~~~~~~~~~~~~~~~~l~~~r~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~g~~~~~~~~g~~ig~~l~~~l~~---  158 (390)
T PRK03545         82 VLFIASHVLSALAWNFTVLLISRIGIAFAHAIFWSITASLAIRVAPAGKKAQALSLLATGTALAMVLGLPLGRVIGQ---  158 (390)
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhhHHHHHHHHHHHHHHHHhhHHHHHHH---
Confidence            999999999999999999999999999998887775 8999999999999999999999999999999999999987   


Q ss_pred             CCCCcccccccccCCcchhhHHHHHHHHHHHHHH-HHhcccCCCCCCCCCCccchhhhhhhhhhhhhhhccccCCccccc
Q 015847          199 KYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIA-AFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKS  277 (399)
Q Consensus       199 ~~~~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~-~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  277 (399)
                          ..|||+.|         ...++..++.... ...+||.++++   ++  +                    .++.++
T Consensus       159 ----~~gw~~~f---------~~~~~~~~l~~~~~~~~~~~~~~~~---~~--~--------------------~~~~~~  200 (390)
T PRK03545        159 ----YLGWRTTF---------LAIGGGALITLLLLIKLLPLLPSEH---SG--S--------------------LKSLPL  200 (390)
T ss_pred             ----HhcHHHHH---------HHHHHHHHHHHHHHHHhCCCCCCCC---cc--h--------------------HHHHHH
Confidence                45565554         6666655554333 34455543211   00  0                    012345


Q ss_pred             ccccchhHHHHHHHHHHHhhhhhHHHHHHHhhcCCcccCccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHH
Q 015847          278 LLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVA  357 (399)
Q Consensus       278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  357 (399)
                      .+|+|.++......++..........+++.++.+.     .|+++.+++.+....+++.++++. ..+++.||.++++..
T Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-----~g~s~~~~~~~~~~~~~~~~~g~~-~~g~l~dr~~~~~~~  274 (390)
T PRK03545        201 LFRRPALVSLYLLTVVVVTAHFTAYSYIEPFVQQV-----AGLSENFATLLLLLFGGAGIIGSV-LFSRLGNRHPSGFLL  274 (390)
T ss_pred             HHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----cCCCccHHHHHHHHHHHHHHHHHH-HHHHHhhccchhHHH
Confidence            77888877655555554444444555666666554     688999999999999999999985 889999999877653


Q ss_pred             HHHHHHHHHHH
Q 015847          358 RIAGVLTIPLL  368 (399)
Q Consensus       358 ~~~~~~~~~~~  368 (399)
                       .+..+..++.
T Consensus       275 -~~~~~~~~~~  284 (390)
T PRK03545        275 -IAIALLLVCL  284 (390)
T ss_pred             -HHHHHHHHHH
Confidence             4444444433

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=99.97  E-value=1.3e-28  Score=231.91  Aligned_cols=285  Identities=14%  Similarity=0.106  Sum_probs=205.2

Q ss_pred             hHHHHHHHHHHHhhccccchhhhHHHHHHHhcc---CccccchhhhhhHHHHHHHHHHHhhhhcccccccccCCchhhHH
Q 015847           41 TELFSIWIIVLCTALPISSLFPFLYFMIKDFQI---AKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIM  117 (399)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~dr~Grr~~l~~  117 (399)
                      +.+...+++.+++.++...+....|.+.++++.   +..+   ....+...+...++..++++++|+++||+|||+++..
T Consensus        22 ~~~~~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~ig~~~~G~l~Dr~Grr~~l~~   98 (432)
T PRK10406         22 WAIVGASSGNLVEWFDFYVYSFCSLYFAHIFFPSGNTTTQ---LLQTAGVFAAGFLMRPIGGWLFGRIADKHGRKKSMLI   98 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHH
Confidence            344456677888999999988889999999863   3332   0113344455566667999999999999999999999


Q ss_pred             HHHHHHHHHHHHhccchHH--------HHHHHHHHHhhhccchhhH-HHHHhhhccchhhhHHHHHHHHHHHHHHhHHHH
Q 015847          118 GTASVVIFNTLFGLSVNFW--------MAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPA  188 (399)
Q Consensus       118 ~~~~~~~~~~~~~~~~~~~--------~l~~~r~l~G~~~~~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~  188 (399)
                      +.++++++++++++++++.        .++++|+++|++.|...+. .++++|++|+++|++..++.+.+...|..+++.
T Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~rg~~~~~~~~~~~~G~~~~~~  178 (432)
T PRK10406         99 SVCMMCFGSLVIACLPGYETIGTWAPALLLLARLFQGLSVGGEYGTSATYMSEVAVEGRKGFYASFQYVTLIGGQLLALL  178 (432)
T ss_pred             HHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHhCCCCcccHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999988764        5889999999998887774 999999999999999999988888888888887


Q ss_pred             hhhhhcCCCCCCCCcccccccccCCcchhhHHHHHHHHHHHHHHHHhcccCCCCCCCCCCccchhhhhhhhhhhhhhhcc
Q 015847          189 LGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEE  268 (399)
Q Consensus       189 i~~~l~~~~~~~~~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (399)
                      +...+.....       -. ....++||.+|.+.++++++.......+||+++++.++.                     
T Consensus       179 ~~~~~~~~~~-------~~-~~~~~gWr~~F~i~~~~~ll~~~~~~~~~e~~~~~~~~~---------------------  229 (432)
T PRK10406        179 VVVVLQQTLE-------DA-ELREWGWRIPFALGAVLAVVALWLRRQLDETSQQETRAL---------------------  229 (432)
T ss_pred             HHHHHHHhCC-------HH-HHhccchHHHHHHHHHHHHHHHHHHhcCCCCchHHHhhh---------------------
Confidence            7655542100       00 000345566667777776665544455566543211000                     


Q ss_pred             ccCCcccccccccchhHHHHHHHHHH-HhhhhhHHHHHHHhhcCCcccCccccchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 015847          269 GREATPKKSLLKNWPLMSSIIVYCVF-SLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFL  347 (399)
Q Consensus       269 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l  347 (399)
                       ++..+.++++++++.+...+...+. ......+..++|.|+.+.     +|++..+.+.......+...+++. +.+++
T Consensus       230 -~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~-----~g~s~~~~~~~~~i~~~~~~i~~~-~~G~l  302 (432)
T PRK10406        230 -KEAGSLKGLWRNRRAFIMVLGFTAAGSLCFYTFTTYMQKYLVNT-----AGMHANVASGIMTAALFVFMLIQP-LIGAL  302 (432)
T ss_pred             -cccccHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----cCCCHHHHHHHHHHHHHHHHHHHH-HHHHH
Confidence             0012355677888777655554433 555666778889888665     788888888888888888888875 77899


Q ss_pred             HHHhcchhHHHHHHHHH
Q 015847          348 ERILGPIMVARIAGVLT  364 (399)
Q Consensus       348 ~~~~~~~~~~~~~~~~~  364 (399)
                      .||++||+.+..+..+.
T Consensus       303 ~Dr~grr~~~~~~~~~~  319 (432)
T PRK10406        303 SDKIGRRTSMLCFGSLA  319 (432)
T ss_pred             HHHcCchHHHHHHHHHH
Confidence            99999998877665543

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=99.97  E-value=1.5e-28  Score=235.64  Aligned_cols=303  Identities=16%  Similarity=0.197  Sum_probs=237.1

Q ss_pred             HHHHHHHHHHHhhccccchhhhHHHHHHHhccCccccchhhhhhHHHHHHHHHHHhhhhcccccccccCCchhhHHHHHH
Q 015847           42 ELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTAS  121 (399)
Q Consensus        42 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~  121 (399)
                      .+..+++..++..++.....+.+|.+.+++|.+..+      .+++.+.+.++..++.++.|+++||+|||++++.+.++
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~------~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~   76 (485)
T TIGR00711         3 LTIVLMLGTFMAVLDSTIVNVAIPTIAGDLGSSLSQ------VQWVITSYMLANAISIPLTGWLAKRFGTRRLFLISTFA   76 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhh------hhHHHHHHHHHHHHHHHhHHHHHHHhCcHHHHHHHHHH
Confidence            345666788888888899999999999999999999      99999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhccchHHHHHHHHHHHhhhccchhhH-HHHHhhhccchhhhHHHHHHHHHHHHHHhHHHHhhhhhcCCCCCC
Q 015847          122 VVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKY  200 (399)
Q Consensus       122 ~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~i~~~l~~~~~~~  200 (399)
                      ..++.++++++++++.+++.|+++|++.+...+. .+++.|++|+++|++++++......+|..+||.+++++.+     
T Consensus        77 ~~~~~~~~~~~~~~~~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~-----  151 (485)
T TIGR00711        77 FTLGSLLCGVAPNLELMIIFRVIQGFGGGPLIPLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPALGPTLGGWIIE-----  151 (485)
T ss_pred             HHHHHHHHhCcCCHHHHHHHHHHHHhhhhhHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhhhccHhHhcc-----
Confidence            9999999999999999999999999998887775 9999999999999999999999999999999999999988     


Q ss_pred             CCcccccccccCCcchhhHHHHHHHHHHHH-HHHHhcccCCCCCCCCCCccchhh-------------hhhhhhhh----
Q 015847          201 PNLFSSESLFGKFPYFLPCLCISLFAFGVT-IAAFWLPETLHRHNDDDDSCDVSY-------------DALESASA----  262 (399)
Q Consensus       201 ~~~~gw~~~f~~~~~~~~~~~~~~~~~~~~-~~~~~~~e~~~~~~~~~~~~~~~~-------------~~~~~~~~----  262 (399)
                        ..|||+.|         ++.+...++.. +..+..||++++..++.+......             +..+....    
T Consensus       152 --~~~w~~~f---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~  220 (485)
T TIGR00711       152 --NYHWRWIF---------LINVPIGIIVVVVAFFILPRDKPAASENFDFLGLLLLSVGLGSLLYGLSEGPERGWFDSNE  220 (485)
T ss_pred             --CcCceehh---------hhhhHHHHHHHHHHHHHcCCccccccCCCcHHHHHHHHHHHHHHHHHHhhCCCCCCCCchH
Confidence              56676665         55544444433 334456664432222111100000             00000000    


Q ss_pred             ---------------hhhhccccCCcccccccccchhHHHHHHHHHHHhhhhhHHHHHHHhhcCCcccCccccchhhHHH
Q 015847          263 ---------------EVKEEEGREATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGE  327 (399)
Q Consensus       263 ---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~  327 (399)
                                     ..++.+.+++....+.+++|+++...+..++..........++|.|+++.     +|+++.+++.
T Consensus       221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~-----~g~s~~~~g~  295 (485)
T TIGR00711       221 ILILSITGLVAIIAFVVWELTDDNPLVDLRLFKYRNFTIGCVYMSLLGLGLYGSFYLLPLYLQQV-----LGYTALQAGL  295 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCCCCccCHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----cCCCHHHHHH
Confidence                           00111122233345678899988888888888887788888899998876     7899999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHhHHh
Q 015847          328 VLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYP  372 (399)
Q Consensus       328 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  372 (399)
                      ......++..++.. +.+++.||+++|+.+..+..+.+++..++.
T Consensus       296 ~~~~~~~~~~~~~~-~~g~l~~r~~~~~~~~~g~~~~~~~~~~~~  339 (485)
T TIGR00711       296 HILPVGLAPMLSSP-IAGRMGDKIDPRKLVTIGLILYAVGFYWRA  339 (485)
T ss_pred             HHHHHHHHHHHHHH-HHHHHHhhcCcHHHHHHHHHHHHHHHHHHh
Confidence            99999999999984 889999999999998888887777766654

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=99.97  E-value=6.1e-28  Score=224.28  Aligned_cols=269  Identities=18%  Similarity=0.190  Sum_probs=205.2

Q ss_pred             ChhHHHHHHHHHHHhhccccchhhhHHHHHHHhccCccccchhhhhhHHHHHHHHHHHhhhhcccccccccCCchhhHHH
Q 015847           39 PITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMG  118 (399)
Q Consensus        39 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~dr~Grr~~l~~~  118 (399)
                      .|+.++.+....+..........+.+|.+.+++|.++.+      .++..+++.++..+++++.|+++||+|||++++.+
T Consensus        18 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~------~g~~~~~~~~~~~~~~~~~g~l~Dr~grr~~~~~~   91 (394)
T PRK10213         18 NWSAVFSVAFCVACLIIVEFLPVSLLTPMAQDLGISEGV------AGQSVTVTAFVAMFASLFITQTIQATDRRYVVILF   91 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHcCCCHHH------HHHHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHH
Confidence            345545555554444545556667789999999999999      99999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhccchHHHHHHHHHHHhhhccchhhH-HHHHhhhccchhhhHHHHHHHHHHHHHHhHHHHhhhhhcCCC
Q 015847          119 TASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPA  197 (399)
Q Consensus       119 ~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~i~~~l~~~~  197 (399)
                      .++.+++.++++++++++.+++.|+++|++.+...+. .+++.|++|+++|++++++...+.++|..++|.+++.+.+  
T Consensus        92 ~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~~~l~~--  169 (394)
T PRK10213         92 AVLLTLSCLLVSFANSFSLLLIGRACLGLALGGFWAMSASLTMRLVPPRTVPKALSVIFGAVSIALVIAAPLGSFLGE--  169 (394)
T ss_pred             HHHHHHHHHHHHHHChHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--
Confidence            9999999999999999999999999999998887775 8899999999999999999999999999999999999998  


Q ss_pred             CCCCCcccccccccCCcchhhHHHHHHHHHHHHHH-HHhcccCCCCCCCCCCccchhhhhhhhhhhhhhhccccCCcccc
Q 015847          198 EKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIA-AFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKK  276 (399)
Q Consensus       198 ~~~~~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~-~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  276 (399)
                           .+|||+.|         .+.++++++..+. ....||+++++++     +                    ....+
T Consensus       170 -----~~gw~~~f---------~~~~~l~~~~~l~~~~~~p~~~~~~~~-----~--------------------~~~~~  210 (394)
T PRK10213        170 -----LIGWRNVF---------NAAAVMGVLCIFWIIKSLPSLPGEPSH-----Q--------------------KQNTF  210 (394)
T ss_pred             -----hcCHHHHH---------HHHHHHHHHHHHHHHHHCCCCCccccc-----c--------------------hhHHH
Confidence                 55665555         5555555443333 3345654321100     0                    01234


Q ss_pred             cccccchhHHHHHHHHHHHhhhhhHHHHH-HHhhcCCcccCccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchh
Q 015847          277 SLLKNWPLMSSIIVYCVFSLHDMAYSEIF-SLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIM  355 (399)
Q Consensus       277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  355 (399)
                      +.+++|.++...+..++..........++ |.|..+      +|+++.+.+..+...+++.++++. +.+++.||.++ +
T Consensus       211 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~------~g~s~~~~g~~~~~~~~~~iig~~-~~~~l~~r~~~-~  282 (394)
T PRK10213        211 RLLQRPGVMAGMIAIFMSFAGQFAFFTYIRPVYMNL------AGFGVDGLTLVLLSFGIASFVGTS-LSSFILKRSVK-L  282 (394)
T ss_pred             HHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh------cCCChhHHHHHHHHHHHHHHHHHH-HHHHHHhccch-h
Confidence            56788888876666555555555555555 555433      788999999999999999999984 88889998544 4


Q ss_pred             HHHHHHH
Q 015847          356 VARIAGV  362 (399)
Q Consensus       356 ~~~~~~~  362 (399)
                      .+..+..
T Consensus       283 ~l~~~~~  289 (394)
T PRK10213        283 ALAGAPL  289 (394)
T ss_pred             HHHHHHH
Confidence            4333333

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=99.97  E-value=2.7e-28  Score=226.79  Aligned_cols=285  Identities=18%  Similarity=0.182  Sum_probs=223.3

Q ss_pred             hHHHHHHHHHHHhhccccchhhhHHHHHHHhccCccccchhhhhhHHHHHHHHHHHhhhhcccccccccCCchhhHHHHH
Q 015847           41 TELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTA  120 (399)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~  120 (399)
                      +....+....+....+.....+.+|.+.+++|.++.+      .+++.+++.++..+++++.|+++||+|||+++..+.+
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~------~g~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~   78 (385)
T TIGR00710         5 AFALLLGCLSILGPLGIDMYLPAFPEIAADLSTPASI------VQMTLTLYLLGFAAGQLLWGPLSDRYGRRPVLLLGLF   78 (385)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcccHHHHHHHhCCCHHH------HHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHH
Confidence            3444455555666777888889999999999999999      9999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhccchHHHHHHHHHHHhhhccchhhH-HHHHhhhccchhhhHHHHHHHHHHHHHHhHHHHhhhhhcCCCCC
Q 015847          121 SVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEK  199 (399)
Q Consensus       121 ~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~i~~~l~~~~~~  199 (399)
                      +.+++.+.++++++++.+++.|++.|++.+...+. .+++.|++|+++|++++++.+....+|..++|.+++.+.+    
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~----  154 (385)
T TIGR00710        79 IFALSSLGLALSNNIETLLVLRFVQAFGASAGSVISQALVRDIYPGEELSRIYSILMPVLALAPAVAPLLGGYILV----  154 (385)
T ss_pred             HHHHHHHHHHHHccHHHHHHHHHHHHcchhHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----
Confidence            99999999999999999999999999998887775 9999999999999999999999999999999999999987    


Q ss_pred             CCCcccccccccCCcchhhHHHHHHHHHHHHHH-HHhcccCCCCCCCCCCccchhhhhhhhhhhhhhhccccCCcccccc
Q 015847          200 YPNLFSSESLFGKFPYFLPCLCISLFAFGVTIA-AFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSL  278 (399)
Q Consensus       200 ~~~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~-~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  278 (399)
                         ..|||         ..+.+.++..++..+. .+..||+++++++++.  +                  +..+..++.
T Consensus       155 ---~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~------------------~~~~~~~~~  202 (385)
T TIGR00710       155 ---WLSWH---------AIFAFLSLAGILLSALIFFILPETLPYEARIQI--S------------------TYFETFLLL  202 (385)
T ss_pred             ---HcCHH---------HHHHHHHHHHHHHHHHHHHhCCCCCCCcccCCH--H------------------HHHHHHHHH
Confidence               34444         4446655555544333 4455665432211100  0                  001133456


Q ss_pred             cccchhHHHHHHHHHHHhhhhhHHHHHHHhhcCCcccCccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHH
Q 015847          279 LKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVAR  358 (399)
Q Consensus       279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  358 (399)
                      +++|+++...+...+..........+.|.++.+.     +|+++.+.+.+.....++.++++. +.+++.||+++|+.+.
T Consensus       203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~g~~~~~~g~~~~~~~~~~~~~~~-~~g~l~~~~~~~~~~~  276 (385)
T TIGR00710       203 LKSKMFWGYALIYGASFGGFFAFFSGAPFVYIDI-----MGVSPSVFGLLFALNIIAMIFGGF-LNGRFIKKWGAKSLLR  276 (385)
T ss_pred             HcCchhHHHHHHHHHHHHHHHHHHHcChHHHHHH-----cCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHhcCHHHHHH
Confidence            7788888776666665555566666667766544     788999999999999999999884 8899999999999888


Q ss_pred             HHHHHHHHHHhHHhH
Q 015847          359 IAGVLTIPLLTSYPY  373 (399)
Q Consensus       359 ~~~~~~~~~~~~~~~  373 (399)
                      .+..+..++..++..
T Consensus       277 ~~~~~~~~~~~~~~~  291 (385)
T TIGR00710       277 MGLILFAVSAVLLEI  291 (385)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            877776666555543

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>PRK11663 regulatory protein UhpC; Provisional

Probab=99.97  E-value=1.7e-28  Score=231.13  Aligned_cols=280  Identities=16%  Similarity=0.159  Sum_probs=213.1

Q ss_pred             hHHHHHHHHHHHhhccccchhhhHHHHHHHhccCccccchhhhhhHHHHHHHHHHHhhhhcccccccccCCchhhHHHHH
Q 015847           41 TELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTA  120 (399)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~  120 (399)
                      +......+..++..+........+|.+.+++|.+..+      .+++.+.+.++..+++++.|+++||+|||+++.++.+
T Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~------~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~~~~~~~   96 (434)
T PRK11663         23 HILITMYLGYALFYFTRKSFNAAMPEMLADLGLSRSD------IGLLATLFYITYGVSKFVSGIVSDRSNARYFMGIGLI   96 (434)
T ss_pred             HHHHHHHHHHHHHHHhhhhHHHhhHHHHHhcCCCHHH------HHHHHHHHHHHHHHHHhhhhHHHhhcCCchhHHHHHH
Confidence            3444556677777777778889999999999999999      9999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhccchHHHHHHHHHHHhhhccchhh-HHHHHhhhccchhhhHHHHHHHHHHHHHHhHHHHhhhhhcCCCCC
Q 015847          121 SVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGP-IKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEK  199 (399)
Q Consensus       121 ~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~-~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~i~~~l~~~~~~  199 (399)
                      +.+++.++++++++++.+++.|++.|++.|...+ ..+++.|++|+++|++++++.+.+.++|..++|.+++++.+    
T Consensus        97 ~~~~~~~~~~~~~~~~~l~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~----  172 (434)
T PRK11663         97 ATGIINILFGFSSSLWAFALLWVLNAFFQGWGWPVCAKLLTAWYSRTERGGWWAIWNTAHNVGGALIPLVVGAIAL----  172 (434)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHccchHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----
Confidence            9999999999999999999999999998877666 48999999999999999999999999999999999999987    


Q ss_pred             CCCcccccccccCCcchhhHHHHHHHHHHH-HHHHHhcccCCCCCCCCCCccchhhhhhhhhhhhhhhccccCCcc-c-c
Q 015847          200 YPNLFSSESLFGKFPYFLPCLCISLFAFGV-TIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATP-K-K  276 (399)
Q Consensus       200 ~~~~~gw~~~f~~~~~~~~~~~~~~~~~~~-~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~  276 (399)
                         .+|||+.|         .+.++..++. ++..+.+||++++...++..+... +. ++..++. +.+..+..+ . .
T Consensus       173 ---~~gw~~~f---------~~~~i~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~-~~-~~~~~~~-~~~~~~~~~~~~~  237 (434)
T PRK11663        173 ---HYGWRYGM---------MIAGIIAIVVGLFLCWRLRDKPQAMGLPSVGEWRH-DA-LELAQQQ-EGAGLSRKEILTK  237 (434)
T ss_pred             ---cccHHHHH---------HHHHHHHHHHHHHHHHHcCCCHhhcCCCCcccccc-cc-cccchhc-cccCCChhhhHHH
Confidence               44555444         6666555443 334456777654321111000000 00 0000000 000001111 1 1


Q ss_pred             cccccchhHHHHHHHHHHHhhhhhHHHHHHHhhcCCcccCccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 015847          277 SLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERIL  351 (399)
Q Consensus       277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~  351 (399)
                      ..+++|.++...+..++..........++|.|+.+.     +|++..+++...+...++..+++. +.+++.||+
T Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~-----~g~s~~~a~~~~~~~~~~~~~g~~-~~g~l~dr~  306 (434)
T PRK11663        238 YVLLNPYIWLLSFSYVLVYVVRAAINDWGNLYMSET-----LGVDLVTANSAVSMFELGGFIGAL-VAGWGSDKL  306 (434)
T ss_pred             HHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-----cCCCHHHHHHHHHHHHHHHHHHHH-HHhhhHHHh
Confidence            256788888877777777777777788899988665     789999999999999999999994 889999998

>PRK10133 L-fucose transporter; Provisional

Probab=99.97  E-value=3.8e-28  Score=228.16  Aligned_cols=302  Identities=15%  Similarity=0.153  Sum_probs=225.0

Q ss_pred             hhHHHHHHHHHHHhhccccchhhhHHHHHHHhccCccccchhhhhhHHHHHHHHHHHhhhhcccccccccCCchhhHHHH
Q 015847           40 ITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGT  119 (399)
Q Consensus        40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~  119 (399)
                      ...+..+...+++..+......+..|.+++++|.++.+      .++..+.+.+++.+++++.|+++||+|||+++..+.
T Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~~~s~~~------~gl~~~~~~~g~~i~~~~~g~l~dr~G~r~~l~~g~   98 (438)
T PRK10133         25 IIPFALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQ------AGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGL   98 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHH
Confidence            34455666777777888888999999999999999999      999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHH---hccchHHHHHHHHHHHhhhccchhhH-HHHHhhhccchhhhHHHHHHHHHHHHHHhHHHHhhhhhcC
Q 015847          120 ASVVIFNTLF---GLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQ  195 (399)
Q Consensus       120 ~~~~~~~~~~---~~~~~~~~l~~~r~l~G~~~~~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~i~~~l~~  195 (399)
                      ++++++.+++   .++++++.++++|+++|++.+...+. .+++.|..++++|.+.++..+....+|..++|.+++.+..
T Consensus        99 ~~~~~~~~l~~~~~~a~~~~~ll~~r~l~G~g~g~~~~~~~~~v~~~~~~~~~~~~~s~~~~~~~~G~~~g~~~g~~l~~  178 (438)
T PRK10133         99 FLYALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLIL  178 (438)
T ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            9999999775   46889999999999999998887775 8888998777777778999999999999999999887652


Q ss_pred             CCCC---------C--CCcccccccccCCcchhhHHHHHHHHH-HHHHH-HHhcccCCCCCCCCCCccchhhhhhhhhhh
Q 015847          196 PAEK---------Y--PNLFSSESLFGKFPYFLPCLCISLFAF-GVTIA-AFWLPETLHRHNDDDDSCDVSYDALESASA  262 (399)
Q Consensus       196 ~~~~---------~--~~~~gw~~~f~~~~~~~~~~~~~~~~~-~~~~~-~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~  262 (399)
                      ...+         .  ....+||..+ ..+|+.+++....... +.++. ...+||.++++  +++ .+           
T Consensus       179 ~~~~~~~~~~~~~l~~~~~~~w~~~~-~~~w~~~f~~~~~v~~~~~~~~~~~~~p~~~~~~--~~~-~~-----------  243 (438)
T PRK10133        179 SNVPHQSQDVLDKMTPEQLSAYKHSL-VLSVQTPYMIIVAIVLLVALLIMLTKFPALQSDN--HSD-AK-----------  243 (438)
T ss_pred             cCCcccchhhhhccChhhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccc--ccc-cc-----------
Confidence            1000         0  0012566554 3467777764333322 22222 22334322110  000 00           


Q ss_pred             hhhhccccCCcccccccccchhHHHHHHHHHHHhhhhhHHHHHHHhh-cCCcccCccccchhhHHHHHHHHHHHHHHHHH
Q 015847          263 EVKEEEGREATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWA-NSPKKLGGLNYSTQMVGEVLAITGFSLLVFQL  341 (399)
Q Consensus       263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~  341 (399)
                           +.+.....++++++|.++...+..++......+...+++.|+ ++.     +|+++.+++..+....++.++++.
T Consensus       244 -----~~~~~~~~~~ll~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~-----~g~s~~~ag~~~~~~~~~~~vG~~  313 (438)
T PRK10133        244 -----QGSFSASLSRLARIRHWRWAVLAQFCYVGAQTACWSYLIRYAVEEI-----PGMTAGFAANYLTGTMVCFFIGRF  313 (438)
T ss_pred             -----ccchhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-----CCCCHHHHHHHHHHHHHHHHHHHH
Confidence                 000112345678899888777777777777776777778775 333     799999999999999999999994


Q ss_pred             HHHHHHHHHhcchhHHHHHHHHHHHHHhHHhH
Q 015847          342 SLYPFLERILGPIMVARIAGVLTIPLLTSYPY  373 (399)
Q Consensus       342 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  373 (399)
                       .++++.||+++|+++..+..+..+.+++..+
T Consensus       314 -~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~  344 (438)
T PRK10133        314 -TGTWLISRFAPHKVLAAYALIAMALCLISAF  344 (438)
T ss_pred             -HHHHHHHHcCHHHHHHHHHHHHHHHHHHHHH
Confidence             8999999999999988887776655554433

>TIGR00891 2A0112 putative sialic acid transporter

Probab=99.97  E-value=3.5e-28  Score=227.49  Aligned_cols=302  Identities=13%  Similarity=0.150  Sum_probs=218.2

Q ss_pred             CCChhHHHHHHHHHHHhhccccchhhhHHHHHHHhccCccccchhhhhhHHHHHHHHHHHhhhhcccccccccCCchhhH
Q 015847           37 GLPITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVII  116 (399)
Q Consensus        37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~dr~Grr~~l~  116 (399)
                      +.+++.+...++..+.+.++.....+..|.+.+++|.+..+      .+++.+++.++..+++++.|+++||+|||+++.
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~------~g~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~~~   81 (405)
T TIGR00891         8 RAQWNAFSAAWLGWLLDAFDFFLVALVLAEVAGEFGLTTVD------AASLISAALISRWFGALMFGLWGDRYGRRLPMV   81 (405)
T ss_pred             cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhh------HHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHH
Confidence            34566677888899999999999999999999999999999      999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhccchHHHHHHHHHHHhhhccchhhH-HHHHhhhccchhhhHHHHHHHHHHHHHHhHHHHhhhhhcC
Q 015847          117 MGTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQ  195 (399)
Q Consensus       117 ~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~i~~~l~~  195 (399)
                      .+.++.+++.++++++++++.+++.|++.|++.+...+. .+++.|++|+++|++++++.+.+..+|..+++.+++.+.+
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~l~~  161 (405)
T TIGR00891        82 TSIVLFSAGTLACGFAPGYITMFIARLVIGIGMGGEYGSSAAYVIESWPKHLRNKASGLLISGYAVGAVVAAQVYSLVVP  161 (405)
T ss_pred             HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhhhhhHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999998887774 9999999999999999999999999999999999999886


Q ss_pred             CCCCCCCcccccccccCCcchhhHHHHHHHHHHHHHHHHhcccCCCCCCCCCCccchhhhhhhhhhhhh---hhccccCC
Q 015847          196 PAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEV---KEEEGREA  272 (399)
Q Consensus       196 ~~~~~~~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~  272 (399)
                             ..+       .+|+..+.+.++..++.++....+||++++.++++++.+ ..+..++..++.   ++..+...
T Consensus       162 -------~~~-------~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~  226 (405)
T TIGR00891       162 -------VWG-------DGWRALFFISILPIIFALWLRKNIPEAEDWKEKHAGKAL-VRTMVDILYGGEHRIANIVMTLA  226 (405)
T ss_pred             -------hcC-------ccHHHHHHHHHHHHHHHHHHHHhCCCChhHHHHhhhhhh-hhhHHHHHhccchhhhhhhhhhh
Confidence                   222       124444466555555555555667776543221111100 000000000000   00000000


Q ss_pred             ccccccc-ccc-hhHHHHHHHHHHHhhhhhHHHHHHHhhcCCcccCccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015847          273 TPKKSLL-KNW-PLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERI  350 (399)
Q Consensus       273 ~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~  350 (399)
                      ...++.. +++ .+........+.+........++|.|+.+.     +|+++.+.+.+....+++.++++. +.+++.||
T Consensus       227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~g~s~~~~~~~~~~~~~~~~~g~~-~~g~l~dr  300 (405)
T TIGR00891       227 AAMVQSAGKRWPTFVYLVVLVLFANLYSHPIQDLLPTYLKAD-----LGLSPHTVANIVVFSNIGAIVGGC-VFGFLGDW  300 (405)
T ss_pred             HHhhhhhhhhhHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHH-----hCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence            0001111 111 122223333333344445556677777654     789999999999999999999984 88999999


Q ss_pred             hcchhHHHHHHHHHH
Q 015847          351 LGPIMVARIAGVLTI  365 (399)
Q Consensus       351 ~~~~~~~~~~~~~~~  365 (399)
                      +++|+.+..+.....
T Consensus       301 ~g~~~~~~~~~~~~~  315 (405)
T TIGR00891       301 LGRRKAYVCSLLAGQ  315 (405)
T ss_pred             hCchhhhHHHHHHHH
Confidence            999998877766553

>PRK10091 MFS transport protein AraJ; Provisional

Probab=99.97  E-value=4.6e-28  Score=224.65  Aligned_cols=280  Identities=18%  Similarity=0.256  Sum_probs=219.2

Q ss_pred             hHHHHHHHHHHHhhccccchhhhHHHHHHHhccCccccchhhhhhHHHHHHHHHHHhhhhcccccccccCCchhhHHHHH
Q 015847           41 TELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTA  120 (399)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~  120 (399)
                      +.++.+....++.........+.+|.+.+++|.+..+      .++..+++.++..+++++.|+++||+|||+++..+.+
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~------~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~   76 (382)
T PRK10091          3 KVILSLALGTFGLGMAEFGIMGVLTELAHDVGISIPA------AGHMISYYALGVVVGAPIIALFSSRYSLKHILLFLVA   76 (382)
T ss_pred             chHHHHHHHHHHHHhhHHHHHhChHHHHHHcCCCHHH------HhHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHH
Confidence            3455677778888888888999999999999999999      9999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhccchHHHHHHHHHHHhhhccchhhH-HHHHhhhccchhhhHHHHHHHHHHHHHHhHHHHhhhhhcCCCCC
Q 015847          121 SVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEK  199 (399)
Q Consensus       121 ~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~i~~~l~~~~~~  199 (399)
                      +.+++.+++++++|++.+++.|++.|++.+...+. ..++.|++++++|+++++....+..+|..++|.+++++.+    
T Consensus        77 ~~~~~~~l~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~----  152 (382)
T PRK10091         77 LCVIGNAMFTLSSSYLMLAIGRLVSGFPHGAFFGVGAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIPLGTYLSQ----  152 (382)
T ss_pred             HHHHHHHHHHHhCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCChHHhhHHHHHHHHHHHHHHHHhccHHHHHhh----
Confidence            99999999999999999999999999998887665 7888999999999999999999999999999999999987    


Q ss_pred             CCCcccccccccCCcchhhHHHHHHHHHHHHH-HHHhcccCCCCCCCCCCccchhhhhhhhhhhhhhhccccCCcccccc
Q 015847          200 YPNLFSSESLFGKFPYFLPCLCISLFAFGVTI-AAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSL  278 (399)
Q Consensus       200 ~~~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~-~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  278 (399)
                         ..|||+.|         .+.++..++..+ ....+||.+++.+  .   +..                    ...+.
T Consensus       153 ---~~gwr~~f---------~~~~~~~~~~~~~~~~~lp~~~~~~~--~---~~~--------------------~~~~~  195 (382)
T PRK10091        153 ---EFSWRYTF---------LLIAVFNIAVLASIYFWVPDIRDEAK--G---GLR--------------------EQFHF  195 (382)
T ss_pred             ---hccHHHHH---------HHHHHHHHHHHHHHHHhCCCCCcccc--c---CHH--------------------HHHHH
Confidence               45555544         666655554433 3455676532110  0   000                    01123


Q ss_pred             cccchhHHHHHHHHHHHhhhhhHHHHHHHhhcCCcccCccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHH
Q 015847          279 LKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVAR  358 (399)
Q Consensus       279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  358 (399)
                      ++++..+......++..........+++.++.+.     +|+++.+.+.+.+..+++.++++. +.+++.||+++++.+.
T Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~g~s~~~~~~~~~~~~~~~~ig~~-~~g~l~~r~~~~~~~~  269 (382)
T PRK10091        196 LRSPAPWLIFAATMFGNAGVFAWFSYIKPYMMFI-----SGFSETSMTFIMMLVGLGMVLGNL-LSGRLSGRYSPLRIAA  269 (382)
T ss_pred             hcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----cCCCHHHHHHHHHHHHHHHHHHhH-HHheeccccCchhHHH
Confidence            5666666555444443333334444555555544     788999999999999999999995 8899999999999988


Q ss_pred             HHHHHHHHHHhHHhH
Q 015847          359 IAGVLTIPLLTSYPY  373 (399)
Q Consensus       359 ~~~~~~~~~~~~~~~  373 (399)
                      .+..+.+++.+.+..
T Consensus       270 ~~~~~~~i~~~~~~~  284 (382)
T PRK10091        270 VTDFIIVLALLMLFF  284 (382)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            887777776655443

>PRK12307 putative sialic acid transporter; Provisional

Probab=99.97  E-value=3.2e-28  Score=229.35  Aligned_cols=294  Identities=17%  Similarity=0.275  Sum_probs=217.6

Q ss_pred             ChhHHHHHHHHHHHhhccccchhhhHHHHHHHhccCccccchhhhhhHHHHHHHHHHHhhhhcccccccccCCchhhHHH
Q 015847           39 PITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMG  118 (399)
Q Consensus        39 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~dr~Grr~~l~~~  118 (399)
                      +++.+...++..+.+.++.....+..|.+.+++|.++.+      .++..+++.++..+++++.|+++||+|||+++.++
T Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~------~~~~~~~~~~~~~l~~~~~g~l~dr~g~r~~l~~~   89 (426)
T PRK12307         16 QKNALFSAWLGYVFDGFDFMLIFYIMYLIKADLGLTDME------GAFLATAAFIGRPFGGALFGLLADKFGRKPLMMWS   89 (426)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHH
Confidence            344566777788888888888899999999999999999      99999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhccchHHHHHHHHHHHhhhccchhhH-HHHHhhhccchhhhHHHHHHHHHHHHHHhHHHHhhhhhcCCC
Q 015847          119 TASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPA  197 (399)
Q Consensus       119 ~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~i~~~l~~~~  197 (399)
                      .++.+++.++++++++++.++++|++.|++.+...+. ..++.|++|+++|+++.++...+..+|..++|.+.+.+.+  
T Consensus        90 ~~~~~~~~~~~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~l~~~l~~--  167 (426)
T PRK12307         90 IVAYSVGTGLSGLASGVIMLTLSRFIVGMGMAGEYACASTYAVESWPKHLKSKASAFLVSGFGIGNIIAAYFMPSFAE--  167 (426)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhCCHhHhhHhhhHHHHHHhHHHHHHHHHHHHHcc--
Confidence            9999999999999999999999999999998877764 8999999999999999999999999999999999998887  


Q ss_pred             CCCCCcccccccccCCcchhhHHHHHHHHHHHHHHHHhcccCCCCCCCCCCccchhhhhhhhhhhhhhhccccCCccccc
Q 015847          198 EKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKS  277 (399)
Q Consensus       198 ~~~~~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  277 (399)
                           ..|||+.|         .+..+..++........||++++.+++.++.+          ++.++.........++
T Consensus       168 -----~~~w~~~f---------~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~  223 (426)
T PRK12307        168 -----AYGWRAAF---------FVGLLPVLLVIYIRARAPESKEWEEAKLSGKG----------KHSQSAWSVFSLSMKG  223 (426)
T ss_pred             -----cCCHHHHH---------HHHHHHHHHHHHHHHHCCCChHHHHhhhhccc----------cccccchhhhhHHHHH
Confidence                 45565554         54433333222222233443321111000000          0000000001123456


Q ss_pred             ccccchhHHHHHHHHH---HHhhhhhHHHHHHHhhcCCcccCccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcch
Q 015847          278 LLKNWPLMSSIIVYCV---FSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPI  354 (399)
Q Consensus       278 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~  354 (399)
                      .+++|.++........   ..........++|.|+.+      .|+++.+.+.+.+..+++.++++. +.+++.||++||
T Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~~~~~~~~~~~~~~~~~~g~~-~~g~l~dr~~~~  296 (426)
T PRK12307        224 LFNRAQFPLTLCVFIVLFSIFGANWPIFGLLPTYLAG------EGFDTGVVSNLMTAAAFGTVLGNI-VWGLCADRIGLK  296 (426)
T ss_pred             HHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------cCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhccH
Confidence            7777777654433222   222223355677877765      578888999999999999999984 889999999999


Q ss_pred             hHHHHHHHHHHHHHhHH
Q 015847          355 MVARIAGVLTIPLLTSY  371 (399)
Q Consensus       355 ~~~~~~~~~~~~~~~~~  371 (399)
                      +....+.++..+..+.+
T Consensus       297 ~~~~~~~~~~~~~~~~~  313 (426)
T PRK12307        297 KTFSIGLLMSFLFIFPL  313 (426)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            98888877766655444

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=99.97  E-value=2.7e-28  Score=223.62  Aligned_cols=247  Identities=15%  Similarity=0.064  Sum_probs=187.1

Q ss_pred             ccccchhhhHHHHHHHhccCccccchhhhhhHHHHHHHHHHHhhhhcccccccccCCchhhHHHHHHHHHHHHHHhccch
Q 015847           55 LPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVN  134 (399)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~  134 (399)
                      .....+.+.+|.+.+|+|.++.+      .|++.+++.+++.+++++.|+++||+|||+++..+......+.......++
T Consensus         5 ~~~~~~~~~lp~i~~~~~~s~~~------~g~~~s~~~~g~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~   78 (368)
T TIGR00903         5 AIWVTFSPVLSLVAEDIDVSKEE------LGLLAITYPAAFLALTIPSGLLLDRAFKRWFLFGSLATFAAAAGRLLDPFN   78 (368)
T ss_pred             HHHHHHHhhHHHHHHHhCcCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHhcc
Confidence            34456788999999999999999      999999999999999999999999999999876655555444433333479


Q ss_pred             HHHHHHHHHHHhhhccchhhHHHHHhhhccchhhhHHHHHHHHHHHHHHhHHHHhhhhhcCCCCCCCCcccccccccCCc
Q 015847          135 FWMAVLTRFLLGSLNGLLGPIKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFP  214 (399)
Q Consensus       135 ~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~i~~~l~~~~~~~~~~~gw~~~f~~~~  214 (399)
                      ++.+++.|+++|++.+...+....++|++|+++|++++++.+.+..+|..+++++++++.+       .+|||..|    
T Consensus        79 ~~~l~~~R~l~G~g~~~~~~~~~~~~~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~~-------~~gWr~~f----  147 (368)
T TIGR00903        79 YEWLLACQLLAALGQPFLLNAFAPAASQIREERRDLVISLLSFAMYLGIIFALAAGLKIYT-------AGGLQLLI----  147 (368)
T ss_pred             HHHHHHHHHHHHhHhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------ccchHHHH----
Confidence            9999999999999988765567777999999999999999999999999999999999987       45666555    


Q ss_pred             chhhHHHHHHHHHH-HHHHHHhcccCCCCCCCCCCccchhhhhhhhhhhhhhhccccCCcccccccccchhHHHHHHHHH
Q 015847          215 YFLPCLCISLFAFG-VTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKNWPLMSSIIVYCV  293 (399)
Q Consensus       215 ~~~~~~~~~~~~~~-~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  293 (399)
                           .+.++++++ .++..+.+||++++++++.   +..        +        ..++.++++++|.+|...+.+++
T Consensus       148 -----~~~~~l~~~~~~~~~~~lp~~p~~~~~~~---~~~--------~--------~~~~~~~ll~~~~~~~~~~~~~~  203 (368)
T TIGR00903       148 -----IPIAAVAAAGIILVLAALPALPFQAAEGF---GFK--------D--------AVKEFGALAGRKDLWIIGAILGF  203 (368)
T ss_pred             -----HHHHHHHHHHHHHHHHHcCCCCCCCCCCc---chH--------H--------HHHHHHHHHcChhHHHHHHHHHH
Confidence                 666666554 4445667888765432110   000        0        00135678899999999999999


Q ss_pred             HHhhhhhHHHHHHHhhcCCcccCccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 015847          294 FSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGP  353 (399)
Q Consensus       294 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~  353 (399)
                      ......++.+++|.|+.+      .|++.. .+.......+.+.++    .+++.||..|
T Consensus       204 ~~~~~~~~~~wlp~~L~~------~g~s~~-~~~~~~l~~~~g~~g----~~~~~d~~~r  252 (368)
T TIGR00903       204 GVALFDNLAIWLEAALRP------AGLEDI-AGDAVALAILAGLIG----VAVIPDRVAR  252 (368)
T ss_pred             HHHHHHHHHHHHHHHHHH------CCCChH-HHHHHHHHHHHHHHH----HHHhhHHhhh
Confidence            999999999999999965      456654 555555555555544    3566666543

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>TIGR00893 2A0114 d-galactonate transporter

Probab=99.96  E-value=2.7e-28  Score=227.25  Aligned_cols=277  Identities=17%  Similarity=0.153  Sum_probs=215.4

Q ss_pred             HHhhccccchhhhHHHHHHHhccCccccchhhhhhHHHHHHHHHHHhhhhcccccccccCCchhhHHHHHHHHHHHHHHh
Q 015847           51 LCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFG  130 (399)
Q Consensus        51 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~  130 (399)
                      ++...+...+....|.+.+++|.+..+      .+++.+++.++..+++++.|+++||+|||+++..+.++.+++.++++
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~g~s~~~------~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~   77 (399)
T TIGR00893         4 VINYLDRANLSFAAPMLQEDLGLSAAQ------YGYVFSAFSWGYVVGQFPGGWLLDRFGARKTLAVFIVIWGVFTGLQA   77 (399)
T ss_pred             hHHHHHHHhhhHhHHHHHHhhCCChhh------HHHHHHHHHHHHHHHHHhHHHHHHhcCcceeeHHHHHHHHHHHHHHH
Confidence            345566677788889999999999999      99999999999999999999999999999999999999999999999


Q ss_pred             ccchHHHHHHHHHHHhhhccchhhH-HHHHhhhccchhhhHHHHHHHHHHHHHHhHHHHhhhhhcCCCCCCCCccccccc
Q 015847          131 LSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESL  209 (399)
Q Consensus       131 ~~~~~~~l~~~r~l~G~~~~~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~i~~~l~~~~~~~~~~~gw~~~  209 (399)
                      ++++++.+++.|++.|++.+...+. .+++.|++|+++|++++++.+....+|..++|.+++.+.+       ..+||  
T Consensus        78 ~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~-------~~~~~--  148 (399)
T TIGR00893        78 FAGAYVSLYILRVLLGAAEAPFFPGIILIVASWFPASERATAVSIFNSAQGLGGIIGGPLVGWILI-------HFSWQ--  148 (399)
T ss_pred             HHcCHHHHHHHHHHHHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHHHHhchHHHHHHHHHHHHHHH-------hCCch--
Confidence            9999999999999999998887775 9999999999999999999999999999999999999887       34444  


Q ss_pred             ccCCcchhhHHHHHHHHHHHHHH-HHhcccCCCCCCCCCCccchhhhhhhhhhhhhhhccccCCcccccccccchhHHHH
Q 015847          210 FGKFPYFLPCLCISLFAFGVTIA-AFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKNWPLMSSI  288 (399)
Q Consensus       210 f~~~~~~~~~~~~~~~~~~~~~~-~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  288 (399)
                             ..+...++..++..+. .+..||++++.+..+++.+....+......+.+++++......++.+++|+++...
T Consensus       149 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  221 (399)
T TIGR00893       149 -------WAFIIEGVLGIIWGVLWLKFIPDPPQKAKWLTEEEKYIVVGGLLAEQQGKGPSTPKKYQIKELLKDRRVWGLA  221 (399)
T ss_pred             -------HHHHHHHHHHHHHHHHhhheecCCCCccccCCHHHHhhcchhhccccccccccCCCccchHHHhcCHHHHHHH
Confidence                   4446666665554443 34456654332211111110000000000001111122333456778899999888


Q ss_pred             HHHHHHHhhhhhHHHHHHHhhcCCcccCccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchh
Q 015847          289 IVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIM  355 (399)
Q Consensus       289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  355 (399)
                      +..++.......+..++|.|+.+.     +|.++.+.+.+.....++..++.. +.+++.||+++|+
T Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~  282 (399)
T TIGR00893       222 LGQFLVNIGLGFFLTWFPTYLVQE-----RGLSILEAGFMASLPGIVGFIGMI-LGGRLSDLLLRRG  282 (399)
T ss_pred             HHHHHHHhHHHHHHHHHHHHHHHH-----hcccHHHhhHHHHHHHHHHHHHHH-HHHHHHHHHhhcc
Confidence            888888888888888999888776     788899999999999999999984 8899999999885

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=99.96  E-value=4.3e-28  Score=230.51  Aligned_cols=282  Identities=13%  Similarity=0.108  Sum_probs=204.7

Q ss_pred             hhHHHHHHHHHHHhhccccchhhhHHHHHHHhccCccccchhhhhhHHHHHHHHHHHhhhhcccccccccCCchhhHHHH
Q 015847           40 ITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGT  119 (399)
Q Consensus        40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~  119 (399)
                      ++.+...+...++.........+..|.+.+++|.+..+      .+++.+.+.+++.+++++.|+++||+|||+++..+.
T Consensus        35 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gls~~~------~g~~~~~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~  108 (476)
T PLN00028         35 MRAFHLSWISFFTCFVSTFAAAPLLPIIRDNLNLTKSD------IGNAGIASVSGSIFSRLAMGPVCDLYGPRYGSAFLL  108 (476)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHH
Confidence            34445556666666666677888899999999999999      999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhccchHHHHHHHHHHHhhhccchhhHHHHHhhhccchhhhHHHHHHHHHHHHHHhHHHHhhhhhcCCCCC
Q 015847          120 ASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPIKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEK  199 (399)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~i~~~l~~~~~~  199 (399)
                      ++.+++.++++++++++.++++|++.|++.+...+...+++|++|+++|++++++.+...++|..+++.+.+.+......
T Consensus       109 ~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~~~~~~~~~~i~~~~~~~~rg~a~g~~~~~~~~g~~~~~~~~~~i~~~~~~  188 (476)
T PLN00028        109 MLTAPAVFCMSLVSSATGFIAVRFFIGFSLATFVSCQYWMSTMFNGKIVGTANGIAAGWGNLGGGVTQLLMPLVFPLIKD  188 (476)
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHhcChhheeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            99999999999999999999999999998776555667889999999999999999877777777776666544321000


Q ss_pred             --CCCcccccccccCCcchhhHHHHHHHHHHHHHHHHhcccCCCCCCCCCCccchhhhhhhhhhhhhhhccccCCccccc
Q 015847          200 --YPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKS  277 (399)
Q Consensus       200 --~~~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  277 (399)
                        .....|||+.|         .+.+++.++..+..+++++++++...++  .+       +.   .+.++.+.....++
T Consensus       189 ~~~~~~~gWr~~f---------~i~g~l~l~~~l~~~~~~~~~p~~~~~~--~~-------~~---~~~~~~~~~~~~~~  247 (476)
T PLN00028        189 AGAPSFTAWRIAF---------FVPGLLHIIMGILVLTLGQDLPDGNYRE--LK-------KS---GTMPKDSFSKVLRY  247 (476)
T ss_pred             cCCcchhhhHHHH---------HHHHHHHHHHHHHHHHHcCcCCCCchhh--HH-------hc---CccccccHHHHHHH
Confidence              00023455444         7777666655554444444322111000  00       00   00000000112345


Q ss_pred             ccccchhHHHHHHHHHHHhhhhhHHHHHHHhhcCCcccCccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcch
Q 015847          278 LLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPI  354 (399)
Q Consensus       278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~  354 (399)
                      .++++++|...+.+++.......+..++|.|+.+.     +|+++.+++.+.+..+++..++++ +.++++||+++|
T Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~-----~g~s~~~a~~~~~~~~~~~~ig~~-~~G~lsDr~~~r  318 (476)
T PLN00028        248 GVTNYRTWILALTYGYSFGVELTMDNIIAEYFYDR-----FGLSLETAGAIAASFGLMNLFARP-AGGYLSDVAARR  318 (476)
T ss_pred             HHcCchhHHHHHHHHHHHHHHHHHHhHHHHHHHHh-----cCCCHHHHHHHHHHHHHHHHHHHh-hhHHHHHHHHHh
Confidence            67788888777776666655566677788887654     789999999999999999999995 899999999765

>TIGR00900 2A0121 H+ Antiporter protein

Probab=99.96  E-value=3.4e-28  Score=224.24  Aligned_cols=288  Identities=16%  Similarity=0.119  Sum_probs=221.4

Q ss_pred             HHHHHHHhhccccchhhhHHHHHHHhccCccccchhhhhhHHHHHHHHHHHhhhhcccccccccCCchhhHHHHHHHHHH
Q 015847           46 IWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIF  125 (399)
Q Consensus        46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~  125 (399)
                      +....++..++.....+.+|.+..+++.+..+      .+++.+++.++..+++++.|+++||+|||+++..+.++..++
T Consensus         4 l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~------~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~~~~~~~~~~~~   77 (365)
T TIGR00900         4 LFAAQLISLIGTAITQVALPLYVLAGTGSASV------LSLAALAGMLPYVVLSPIAGALADRYDRKKVMIGADLIRAVL   77 (365)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhhccHHH------HHHHHHHHHHHHHHHHHhhhHHHHhhchhHHHHHHHHHHHHH
Confidence            45567777788888889999999999999998      999999999999999999999999999999999999998888


Q ss_pred             HHHHhccc-----hHHHHHHHHHHHhhhccchhhH-HHHHhhhccchhhhHHHHHHHHHHHHHHhHHHHhhhhhcCCCCC
Q 015847          126 NTLFGLSV-----NFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEK  199 (399)
Q Consensus       126 ~~~~~~~~-----~~~~l~~~r~l~G~~~~~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~i~~~l~~~~~~  199 (399)
                      .++.++.+     +++.+++.|++.|++.+...+. .+++.|++|+++|++++++.+.+..+|..++|.+++.+.+    
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~----  153 (365)
T TIGR00900        78 VAVLPFVALLGGLNIWQVYVLAGILAIAQAFFTPAYQAMLPDLVPEEQLTQANSLSQAVRSLFYIVGPGIGGLMYA----  153 (365)
T ss_pred             HHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH----
Confidence            88887777     9999999999999998888875 9999999999999999999999999999999999999987    


Q ss_pred             CCCcccccccccCCcchhhHHHHHHHHHHHHHHHHhcccCCCCCCCCCCccchhhhhhhhhhhhhhhccccCCccccccc
Q 015847          200 YPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLL  279 (399)
Q Consensus       200 ~~~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  279 (399)
                         ..|||..         +...++..++..+....+++++++++++++.+++.              .++..+..+..+
T Consensus       154 ---~~g~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~  207 (365)
T TIGR00900       154 ---TLGIKWA---------IWVDAVGFAISALLIVSVRIPELAASEIQALSNAV--------------LRDTREGIKFVL  207 (365)
T ss_pred             ---HhhHHHH---------HHHHHHHHHHHHHHHHhcccccCCCccccccchhH--------------HHHHHhHHHHHH
Confidence               4455444         46655555544444333332211111110000000              000111344567


Q ss_pred             ccchhHHHHHHHHHHHhhhhhHH-HHHHHhhcCCcccCccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHH
Q 015847          280 KNWPLMSSIIVYCVFSLHDMAYS-EIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVAR  358 (399)
Q Consensus       280 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  358 (399)
                      ++|.++...+..++......... .+.|.|..+.     +|.++.+.+.+....+++..++.. ..+++.||.++++.+.
T Consensus       208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~  281 (365)
T TIGR00900       208 KNPLLRTLLLLALLFNLVFAPAIVALFPYVQSKY-----LGRGSTHYGWVLAAFGLGALLGAL-LLGLLGRYFKRMALMT  281 (365)
T ss_pred             cCcHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-----hCCchHHHHHHHHHHHHHHHHHHH-HHHHHHHHhchhHHHH
Confidence            88888887777776666665555 6778777654     688999999999999999999885 7889999999999888


Q ss_pred             HHHHHHHHHHhHHhHHH
Q 015847          359 IAGVLTIPLLTSYPYIA  375 (399)
Q Consensus       359 ~~~~~~~~~~~~~~~~~  375 (399)
                      .+..+.++++..+.+.+
T Consensus       282 ~~~~~~~~~~~~~~~~~  298 (365)
T TIGR00900       282 GAIFVIGLAILVVGLTP  298 (365)
T ss_pred             HHHHHHHHHHHHHHhhc
Confidence            77777666666655544

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=99.96  E-value=3.6e-28  Score=223.02  Aligned_cols=289  Identities=25%  Similarity=0.422  Sum_probs=220.7

Q ss_pred             HHHHHHhhccccchhhhHH-HHHHHhccCccccchhhhhhHHHHHHHHHHHhhhhcccccccccCCchhhHHHHHHHHHH
Q 015847           47 WIIVLCTALPISSLFPFLY-FMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIF  125 (399)
Q Consensus        47 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~  125 (399)
                      ++..++.........+.+| .+.+++|.+..+      .+++.+++.++..+++++.|+++||+|||+++..+.++.+++
T Consensus         2 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~------~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~   75 (352)
T PF07690_consen    2 FLAFFLSGFGFSIISPALPLYLAEELGLSPSQ------IGLLFSAFFLGSALFSPFAGYLSDRFGRRRVLIIGLLLFALG   75 (352)
T ss_dssp             HHHHHHHHHHHHHHHHHHH-HHHCCSTTTSHC------HHHHHHHHHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHccCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeEeehhhhhhhH
Confidence            4566777778888899999 888999999999      999999999999999999999999999999999999999999


Q ss_pred             HHHHhccchHHHHHHHHHHHhhhccchhhH-HHHHhhhccchhhhHHHHHHHHHHHHHHhHHHHhhhhhcCCCCCCCCcc
Q 015847          126 NTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLF  204 (399)
Q Consensus       126 ~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~i~~~l~~~~~~~~~~~  204 (399)
                      .++..++++.+.+++.|++.|++.+...+. .+++.|++|+++|++++++.+.+..+|..++|.+++.+.+       ..
T Consensus        76 ~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~-------~~  148 (352)
T PF07690_consen   76 SLLLAFASNFWLLLIARFLLGIGSGFFSPASNALIADWFPPEERGRAFGILSAGFSLGSILGPLLGGFLIS-------YF  148 (352)
T ss_dssp             HHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTCCHHHHHHHHHHHHHHHHHHHHHHHHHCCC-------HC
T ss_pred             HHHhhhhhhHHHHhhhccccccccccccccccccccccchhhhhhhccccccchhhhhhhcccchhhhhhh-------cc
Confidence            666666688889999999999998888775 9999999999999999999999999999999999999997       55


Q ss_pred             cccccccCCcchhhHHHHHHHHHHHHHH-HHhcccCCCCCCCCCCccchhhhhhhhhhhhhhhccccCCc-ccccccccc
Q 015847          205 SSESLFGKFPYFLPCLCISLFAFGVTIA-AFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREAT-PKKSLLKNW  282 (399)
Q Consensus       205 gw~~~f~~~~~~~~~~~~~~~~~~~~~~-~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~  282 (399)
                      |||..|         ++.++..++..+. ..++++++++++.++++++.             ++.++... ..+..+++|
T Consensus       149 ~~~~~~---------~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~  206 (352)
T PF07690_consen  149 GWRWAF---------LISAILSLIAAILFILFLPEPPPPRERESPKESE-------------SKKPKPLKPGFKSLFKNP  206 (352)
T ss_dssp             HHCCHH---------HHHHHHHHHHHHHHHCCC---STTTT--SSTTTT---------------HHHCCCH-CTHHHHHH
T ss_pred             cccccc---------ccccchhhhhhhhHhhhhhhcccccccccccccc-------------cccccccccccccccccc
Confidence            555554         7777776665543 34555544433332221110             00001111 255667777


Q ss_pred             hhHHHHHHHHHHHhhhhhHHHHHHHhhcCCcccCccccc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHH
Q 015847          283 PLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYS-TQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAG  361 (399)
Q Consensus       283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  361 (399)
                      .+|......++..+.......+.|.|+.+.     +|++ ..+.+.+....++...+++. +.+++.||+++++......
T Consensus       207 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~  280 (352)
T PF07690_consen  207 VLWILLIAFFLFFFVFSGFSFFLPLYLQEV-----LGFSGPSQAGLLFSIFGIVGIIGSL-LAGRLSDRFGRRRRLLIAI  280 (352)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHHCCHH-----HHCCTHHHHHHHHHHHHHHHHHHHH-HHHHHHHHTTCHHHHHHHH
T ss_pred             hhhhhhhhhhHHHHHHHHhhcccchhhhhc-----cCCCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHcCcHHHHHHHH
Confidence            777555666666666667888888886665     7888 78999999999999999884 8899999999877777766


Q ss_pred             HHHHHHHhHHhHHHH
Q 015847          362 VLTIPLLTSYPYIAM  376 (399)
Q Consensus       362 ~~~~~~~~~~~~~~~  376 (399)
                      ....+....+.....
T Consensus       281 ~~~~~~~~~~~~~~~  295 (352)
T PF07690_consen  281 LLLILGALGLLLLPF  295 (352)
T ss_dssp             HHHHHHHHHHCCSHH
T ss_pred             HHHHHHHHHHHHHHH
Confidence            666666555554443

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=99.96  E-value=1.1e-27  Score=224.29  Aligned_cols=292  Identities=16%  Similarity=0.078  Sum_probs=218.3

Q ss_pred             CChhHHHHHHHHHHHhhccccchhhhHHHHHHHhccCccccchhhhhhHHHHHHHHHHHhhhhcccccccccCCchhhHH
Q 015847           38 LPITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIM  117 (399)
Q Consensus        38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~dr~Grr~~l~~  117 (399)
                      +++..+...+...++++++.....+..|.+.+++|.++.+      .+++.+.+.++..+++++.|+++||+|||+++..
T Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~------~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~   85 (406)
T PRK11551         12 RLALTIGLCFLVALLEGLDLQSAGVAAPRMAQEFGLDVAQ------MGWAFSAGILGLLPGALLGGRLADRIGRKRILIV   85 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHH
Confidence            4455566777788888888888999999999999999999      9999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhccchHHHHHHHHHHHhhhccchhhH-HHHHhhhccchhhhHHHHHHHHHHHHHHhHHHHhhhhhcCC
Q 015847          118 GTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQP  196 (399)
Q Consensus       118 ~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~i~~~l~~~  196 (399)
                      +.++..++.++++++++++.+++.|++.|++.+...+. .+++.|++|+++|++++++.+.+..+|..++|.+++.+.+ 
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~-  164 (406)
T PRK11551         86 SVALFGLFSLATAQAWDFPSLLVARLLTGVGLGGALPNLIALTSEAVGPRLRGTAVSLMYCGVPFGGALASVIGVLAAG-  164 (406)
T ss_pred             HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-
Confidence            99999999999999999999999999999998887775 9999999999999999999999999999999999988876 


Q ss_pred             CCCCCCcccccccccCCcchhhHHHHHHHHHHHH-HHHHhcccCCCCCCCCCCccchhhhhhhhhhhhhhhccccCCccc
Q 015847          197 AEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVT-IAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPK  275 (399)
Q Consensus       197 ~~~~~~~~gw~~~f~~~~~~~~~~~~~~~~~~~~-~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  275 (399)
                            ..+||         ..+.+.++..++.. +...++||++++.++++++.+..  +       .       ....
T Consensus       165 ------~~~~~---------~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~--~-------~-------~~~~  213 (406)
T PRK11551        165 ------DAAWR---------HIFYVGGVGPLLLVPLLMRWLPESRAFAQAAGAGKQRA--P-------V-------LRAL  213 (406)
T ss_pred             ------ccCHH---------HHHHHHHHHHHHHHHHHHHhCCCChhHHhccCcchhhh--h-------h-------HHHH
Confidence                  34444         44466555444433 34456788654322211100000  0       0       0000


Q ss_pred             ccccccchhHHHHHHHHHHHhhhhhHHHHHHHhhcCCcccCccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchh
Q 015847          276 KSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIM  355 (399)
Q Consensus       276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  355 (399)
                      .+..+.+..+......++..........++|.+..+      .|+++.+.+......+++.++++. +.+++.||.++++
T Consensus       214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~------~g~s~~~~~~~~~~~~~~~~~~~~-~~g~l~dr~g~~~  286 (406)
T PRK11551        214 FGEGRATATLLLWISYFFTLIVLYFLLNWLPSLLVG------QGLSRSQAGLVQIAFNIGGALGSL-LIGALMDRLRPRR  286 (406)
T ss_pred             hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh------CCCChhhhhHHHHHHHHHHHHHHH-HHHHHHHHHhHHH
Confidence            000111223333333344444445566677877765      688999999999999999999985 8899999999999


Q ss_pred             HHHHHHHHHHHHHhHHhHH
Q 015847          356 VARIAGVLTIPLLTSYPYI  374 (399)
Q Consensus       356 ~~~~~~~~~~~~~~~~~~~  374 (399)
                      .+..+.+...++++.+...
T Consensus       287 ~~~~~~~~~~~~~~~~~~~  305 (406)
T PRK11551        287 VVLLIYAGILASLAALAAA  305 (406)
T ss_pred             HHHHHHHHHHHHHHHHHhc
Confidence            8877666666655554433

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=99.96  E-value=1.7e-27  Score=221.45  Aligned_cols=262  Identities=13%  Similarity=0.061  Sum_probs=207.3

Q ss_pred             cchhhhHHHHHHHhccCccccchhhhhhHHHHHHHHHHHhhhhcccccccccCCchhhHHHHHHHHHHHHHHhccchHHH
Q 015847           58 SSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWM  137 (399)
Q Consensus        58 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~  137 (399)
                      ....+.+|.+.+|+|.|..+      .++..+.+.+++.+++++.|+++||+|||+++..+..+.+++.+.+++++|++.
T Consensus        26 ~~~~~~lp~i~~~~~~s~~~------~g~~~s~~~~~~~l~~~~~g~l~dr~G~r~~l~~~~~l~~~~~~~~~~a~~~~~   99 (393)
T PRK09705         26 TSVGPLLPQLRQASGMSFSV------AALLTALPVVTMGGLALAGSWLHQHVSERRSVAISLLLIAVGALMRELYPQSAL   99 (393)
T ss_pred             hccchhHHHHHHHhCCCHHH------HHHHHHHHHHHHHHHhhhhHHHHHHhCchHHHHHHHHHHHHHHHHHHHCcchHH
Confidence            66789999999999999999      999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhhccchhhH-HHHHhhhccchhhhHHHHHHHHHHHHHHhHHHHhhhhhcCCCCCCCCcccccccccCCcch
Q 015847          138 AVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYF  216 (399)
Q Consensus       138 l~~~r~l~G~~~~~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~i~~~l~~~~~~~~~~~gw~~~f~~~~~~  216 (399)
                      +++.|+++|++.+...+. ..++.|++| ++|+++++.+..+..+|..+++.+++++.+.      ..+||..+      
T Consensus       100 ll~~r~l~Gig~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~g~~~~~~l~~~------~~~w~~~~------  166 (393)
T PRK09705        100 LLSSALLGGVGIGIIQAVMPSVIKRRFQ-QRTPLVMGLWSAALMGGGGLGAAITPWLVQH------SETWYQTL------  166 (393)
T ss_pred             HHHHHHHHHhHHHHHhhhhhHHHHHHcc-ccchhHHHHHHHHHHHHHHHHHHHHHHHHHh------cCCHHHHH------
Confidence            999999999998887775 888899987 7899999999999999999999999998871      12565543      


Q ss_pred             hhHHHHHHHHHHHHHHHHhcccCCCCCCCCCCccchhhhhhhhhhhhhhhccccCCcccccccccchhHHHHHHHHHHHh
Q 015847          217 LPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKNWPLMSSIIVYCVFSL  296 (399)
Q Consensus       217 ~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  296 (399)
                         ...++..++.....+...++.+++  +++  +                    +...++.+++++.+...+.+++...
T Consensus       167 ---~~~~~~~~~~~~~~~~~~~~~~~~--~~~--~--------------------~~~~~~~l~~~~~~~l~~~~~~~~~  219 (393)
T PRK09705        167 ---AWWALPAVVALFAWWWQSAREVAS--SHK--T--------------------TTTPVRVVFTPRAWTLGVYFGLING  219 (393)
T ss_pred             ---HHHHHHHHHHHHHHHHHhcCCCcc--ccC--C--------------------CcCCcccccCHhHHHHHHHHHHHHH
Confidence               333333333333222222211110  000  0                    0012345567777777777777777


Q ss_pred             hhhhHHHHHHHhhcCCcccCccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHhHHh
Q 015847          297 HDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYP  372 (399)
Q Consensus       297 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  372 (399)
                      .......++|.|+.+      +|+++.++|...+..+++.++++. ..+++.||.++++....+..+..++...+.
T Consensus       220 ~~~~~~~~lp~~l~~------~g~s~~~ag~~~~~~~i~~i~g~~-~~g~l~~r~~~~~~~~~~~~l~~~~~~~~~  288 (393)
T PRK09705        220 GYASLIAWLPAFYIE------IGASAQYSGSLLALMTLGQAAGAL-LMPAMARHQDRRKLLMLALVLQLVGFCGFI  288 (393)
T ss_pred             HHHHHHHHHHHHHHH------cCCChhhhhHHHHHHHHHHHHHHH-HHHHHHhhccchHHHHHHHHHHHHHHHHHH
Confidence            777788889988765      688999999999999999999995 889999999999988888777766665543

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=99.96  E-value=1.6e-27  Score=220.22  Aligned_cols=285  Identities=12%  Similarity=0.075  Sum_probs=212.3

Q ss_pred             CChhHHHHHHHHHHHhhccccchhhhHHHHHH-HhccCccccchhhhhhHHHHHHHHHHHhhhhcccccccccCCchhhH
Q 015847           38 LPITELFSIWIIVLCTALPISSLFPFLYFMIK-DFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVII  116 (399)
Q Consensus        38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~dr~Grr~~l~  116 (399)
                      ..++.++...+..++.........+..+.+.+ ++|+|++|      .+++.+++.+++.++.++.|++.||+|.|+++.
T Consensus        31 ~a~r~l~~s~~~f~~~F~~w~~~~~l~~~~~~~~~~ls~~q------~g~l~ai~~l~~al~rip~G~l~Dr~G~R~v~~  104 (462)
T PRK15034         31 IARRNLWISVSCLLLAFCVWMLFSAVTVNLNKIGFNFTTDQ------LFLLTALPSVSGALLRVPYSFMVPIFGGRRWTV  104 (462)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHH
Confidence            34567777778888888888889998888876 89999999      999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhcc-----chHHHHHHHHHHHhhhccchhhHHHHHhhhccchhhhHHHHHHHHHHHHHHhHHHHhhh
Q 015847          117 MGTASVVIFNTLFGLS-----VNFWMAVLTRFLLGSLNGLLGPIKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGG  191 (399)
Q Consensus       117 ~~~~~~~~~~~~~~~~-----~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~i~~  191 (399)
                      ++.++.++.++..+++     ++++.+++.|++.|++.+.+.+....+++++|+++||+++|+.....++|..+++++..
T Consensus       105 ~~~ll~~i~~~~~~~a~~~~~~s~~~lli~r~l~Gigg~~f~~~~~~vs~wfp~~~rG~A~Gi~~g~G~~G~~l~~~l~p  184 (462)
T PRK15034        105 FSTAILIIPCVWLGIAVQNPNTPFGIFIVIALLCGFAGANFASSMGNISFFFPKAKQGSALGINGGLGNLGVSVMQLVAP  184 (462)
T ss_pred             HHHHHHHHHHHHHHHHHcccCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHHCCHhHhHHHHHHHHHHHhhHHHHHHHHHH
Confidence            9999999999998876     89999999999999985545556999999999999999999997666666665555554


Q ss_pred             hhc-----CCCCCCCCccccccccc----CCcchhhHHHHHHHHHHHHHH-HHhcccCCCCCCCCCCccchhhhhhhhhh
Q 015847          192 FLA-----QPAEKYPNLFSSESLFG----KFPYFLPCLCISLFAFGVTIA-AFWLPETLHRHNDDDDSCDVSYDALESAS  261 (399)
Q Consensus       192 ~l~-----~~~~~~~~~~gw~~~f~----~~~~~~~~~~~~~~~~~~~~~-~~~~~e~~~~~~~~~~~~~~~~~~~~~~~  261 (399)
                      .+.     +       .+||+....    ..+|+....+...+.++..+. ++.+++.++ .  +.              
T Consensus       185 ~~i~~~l~~-------~~G~~~~~~~~g~~~~~~~~~~~~~~~~iv~~i~~~~~~~~~~~-~--~~--------------  240 (462)
T PRK15034        185 LVIFVPVFA-------FLGVNGVPQADGSVMSLANAAWIWVPLLAIATIAAWSGMNDIAS-S--RA--------------  240 (462)
T ss_pred             HHHHHHHHH-------HhccccccccccchHHHHHHHHHHHHHHHHHHHHHHHhCCCccc-c--cc--------------
Confidence            332     3       344443321    222555445555555444433 334343221 1  00              


Q ss_pred             hhhhhccccCCcccccccccchhHHHHHHHHHHHhhhhhHHHHHHHhhcCCcccCccccchhhHHHHHHHHHHHHHHHHH
Q 015847          262 AEVKEEEGREATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQL  341 (399)
Q Consensus       262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~  341 (399)
                               ..++.++.+|+|+.|...+.+++.+..+.++..++|.|..+.     +  +............+...+.+ 
T Consensus       241 ---------~~~~~~~vlk~~~~Wllslly~~tFG~fvg~s~~lp~~~~~~-----~--~~~~~l~~~~l~~l~~~l~r-  303 (462)
T PRK15034        241 ---------SIADQLPVLQRLHLWLLSLLYLATFGSFIGFSAGFAMLAKTQ-----F--PDVNILRLAFFGPFIGAIAR-  303 (462)
T ss_pred             ---------CHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH-----c--ChHHHHHHHHHHHHHHHHHH-
Confidence                     011345688999999999999999989888988999987663     2  22223322334456677777 


Q ss_pred             HHHHHHHHHhcchhHHHHHHHHHHHHHh
Q 015847          342 SLYPFLERILGPIMVARIAGVLTIPLLT  369 (399)
Q Consensus       342 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~  369 (399)
                      +++|+++||+|+++++.++.+...++..
T Consensus       304 plgG~LADRiG~~~vl~~~~i~~~i~~~  331 (462)
T PRK15034        304 SVGGAISDKFGGVRVTLINFIFMAIFSA  331 (462)
T ss_pred             HhhHHHHHhcCchHHHHHHHHHHHHHHH
Confidence            5899999999999999888876666553

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=99.96  E-value=5.4e-28  Score=223.23  Aligned_cols=301  Identities=12%  Similarity=0.100  Sum_probs=218.3

Q ss_pred             HHHHHHHHHHhhccccchhhhHHH-HHHHhccCccccchhhhhhHHHHHHHHHHHhhhhcccccccccCCchhhHHHHHH
Q 015847           43 LFSIWIIVLCTALPISSLFPFLYF-MIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTAS  121 (399)
Q Consensus        43 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~  121 (399)
                      ++..++..++.........+..|. +.+++|.++.+      .+++.+++.++..+++++.|+++||+|||+.+.++.++
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~------~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~   76 (366)
T TIGR00886         3 LFFSWFGFFLSFSVWFAFSPLAVQMIKDDLGLSTAQ------LGNLVAVPVLAGAVLRIILGFLVDKFGPRYTTTLSLLL   76 (366)
T ss_pred             hHHHHHHHHHHHHHHHHhHHhhhHHHHHHhCCCHHH------hhHhhHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHH
Confidence            345666777777778888999995 88999999999      99999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhccc-hHHHHHHHHHHHhhhccchhhHHHHHhhhccchhhhHHHHHHHHHHHHHHhHHHHhhhhhcCCCC--
Q 015847          122 VVIFNTLFGLSV-NFWMAVLTRFLLGSLNGLLGPIKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAE--  198 (399)
Q Consensus       122 ~~~~~~~~~~~~-~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~i~~~l~~~~~--  198 (399)
                      .+++.+++++++ +++.+++.|+++|++.+...+..++++|++|+++|++++++.....++|..+++.+++.+.....  
T Consensus        77 ~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~  156 (366)
T TIGR00886        77 LAIPCLWAGLAVQSYSVLLLLRLFIGIAGGSFASCMPWISFFFPKKIQGTALGLAAGWGNMGGGVAQFVMPPIIGSLIFG  156 (366)
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHHHhchhhHhHHHHHHHhcCHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhc
Confidence            999999999999 99999999999999876665568899999999999999999998888888877777766653100  


Q ss_pred             -CCCCcccccccccCCcchhhHHHHHHH-HHHHHHHHHhcccCCCCCCCCCCccchhhhhhhhhhhhhhhccccCCcccc
Q 015847          199 -KYPNLFSSESLFGKFPYFLPCLCISLF-AFGVTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKK  276 (399)
Q Consensus       199 -~~~~~~gw~~~f~~~~~~~~~~~~~~~-~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  276 (399)
                       +.....+||+.|     .   ...++. .+..++.....+|++++++++++.+... +.     ..   .++......+
T Consensus       157 ~~~~~~~~w~~~~-----~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-----~~---~~~~~~~~~~  219 (366)
T TIGR00886       157 AGLPAHLAWGWAF-----V---IVPAGILLLPALLIFFVGADTPPGKPATGKLSFKG-AR-----WS---VGTGALGDQL  219 (366)
T ss_pred             ccccccccccchh-----H---HHHHHHHHHHHHHHHHhcccCCcccccchhccccc-cc-----cc---ccchhHHHHH
Confidence             000123454443     0   222222 2333334445566543321111100000 00     00   0000111345


Q ss_pred             cccccchhHHHHHHHHHHHhhhhhHHHHHHHhhcCCcccCccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhH
Q 015847          277 SLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMV  356 (399)
Q Consensus       277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  356 (399)
                      +.+++|+++...+..++..........+.|.|+.+.     +|+++.+++.+.....+..++++ ++.+++.||+++|+.
T Consensus       220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~g~~~~~~~~~~~~~~~~~~~~~-~~~g~l~~r~g~~~~  293 (366)
T TIGR00886       220 KVFRDRHTWILALLYSVTFGSFLGVSSIFAMFFKDQ-----FGLSKVTAGAYASLGGLLGSLAR-PLGGAISDRLGGARK  293 (366)
T ss_pred             HHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHH-----cCCcHHHHHHHHHHHHHHHHHHh-hccchHHHhhccchh
Confidence            577888888877777776666777788888888765     78899999999998899998888 488999999999887


Q ss_pred             HHHHHHHHHHHHhHHh
Q 015847          357 ARIAGVLTIPLLTSYP  372 (399)
Q Consensus       357 ~~~~~~~~~~~~~~~~  372 (399)
                      ...+.....++..++.
T Consensus       294 ~~~~~~~~~~~~~~~~  309 (366)
T TIGR00886       294 LLMSFLGVAMGAFLVV  309 (366)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            7776666555554443

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=99.96  E-value=7.9e-28  Score=222.73  Aligned_cols=272  Identities=13%  Similarity=0.111  Sum_probs=207.5

Q ss_pred             cccchhhhHHHHHHHhccCccccchhhhhhHHHHHHHHHHHhhhhcccccccccCCchhhHHHHHHHHHHHHHHhccchH
Q 015847           56 PISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNF  135 (399)
Q Consensus        56 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~  135 (399)
                      ......+..|.+.+++|.++.+      .+++.+++.++..+++++.|+++||+|||+++..+.++.+++.+.+++++++
T Consensus        18 ~~~~~~~~~~~~~~~~~~s~~~------~g~~~s~~~~~~~~~~~~~G~l~d~~G~r~~~~~~~~~~~~~~~~~~~~~~~   91 (377)
T TIGR00890        18 YVYTWTLLAPPLGRYFGVGVTA------VAIWFTLLLIGLAMSMPVGGLLADKFGPRAVAMLGGILYGLGFTFYAIADSL   91 (377)
T ss_pred             HHhhhhhHHHHHHHHhCCCHHH------HHHHHHHHHHHHHHHhhhhHHHHHHcCccchhHHhHHHHHHHHHHHHHHHHH
Confidence            3556788899999999999999      9999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhhccchhh-HHHHHhhhccchhhhHHHHHHHHHHHHHHhHHHHhhhhhcCCCCCCCCcccccccccCCc
Q 015847          136 WMAVLTRFLLGSLNGLLGP-IKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFP  214 (399)
Q Consensus       136 ~~l~~~r~l~G~~~~~~~~-~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~i~~~l~~~~~~~~~~~gw~~~f~~~~  214 (399)
                      +.++++|++.|++.+...+ ....+.|++| ++|+++.++...+.++|..+++.+.+.+.+       ..|||       
T Consensus        92 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-------~~~~~-------  156 (377)
T TIGR00890        92 AALYLTYGLASAGVGIAYGIALNTAVKWFP-DKRGLASGIIIGGYGLGSFILSPLITSVIN-------LEGVP-------  156 (377)
T ss_pred             HHHHHHHHHHhHHHHHHHHhHHHHHHHHcC-cccHHHHHHHHHhcchhHhHHHHHHHHHHh-------cccHH-------
Confidence            9999999999999887655 4777888887 679999999999999999887767666665       34444       


Q ss_pred             chhhHHHHHHHHHHHHHH-HHhcccCCCCCCCCCCccchhhhhhhhhhhhhhhccccCCcccccccccchhHHHHHHHHH
Q 015847          215 YFLPCLCISLFAFGVTIA-AFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKNWPLMSSIIVYCV  293 (399)
Q Consensus       215 ~~~~~~~~~~~~~~~~~~-~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  293 (399)
                        ..+.+.++..++..+. .++++|++++..+++++.+                  +.....++.+++|.++...+..++
T Consensus       157 --~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~  216 (377)
T TIGR00890       157 --AAFIYMGIIFLLVIVLGAFLIGYPPGQLIKTNIEVS------------------VKDYTVWEMLRTPQFWVLYLSFFL  216 (377)
T ss_pred             --HHHHHHHHHHHHHHHHHHHheecCchhccccCcccc------------------hhhhhHHHHHcCccHHHHHHHHHH
Confidence              4447766666655443 4445544322111110000                  001133456778888777666666


Q ss_pred             HHhhhhhHHHHHHHhhcCCcccCccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHhHHhH
Q 015847          294 FSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPY  373 (399)
Q Consensus       294 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  373 (399)
                      ..........+++.|.++      +|.+..+.+.+.....++..+++. ..+++.||++||+.+..+..+.+++.+.+..
T Consensus       217 ~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~-~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~  289 (377)
T TIGR00890       217 NAVSGLLLIGLYKPYGQS------LGLSDGFLVLAVSISSIFNGGGRP-FLGALSDKIGRQKTMSIVFGISAVGMAAMLF  289 (377)
T ss_pred             HhHHHHHHHHHHHHHHHH------cCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhhhhhhHHHHHHHHHHHHHHH
Confidence            555555555556656443      677888889999999999999984 8899999999999988888877777766554


Q ss_pred             HH
Q 015847          374 IA  375 (399)
Q Consensus       374 ~~  375 (399)
                      .+
T Consensus       290 ~~  291 (377)
T TIGR00890       290 IP  291 (377)
T ss_pred             cc
Confidence            44

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=99.96  E-value=1.9e-27  Score=222.54  Aligned_cols=283  Identities=17%  Similarity=0.151  Sum_probs=221.1

Q ss_pred             HHHHHHHHhhccccchhhhHHHHHHHhccCccccchhhhhhHHHHHHHHHHHhhhhcccccccccCCchhhHHHHHHHHH
Q 015847           45 SIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVI  124 (399)
Q Consensus        45 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~  124 (399)
                      .+.+..++..+....+.+.+|.+.+++|.+..+      .++..+.+.++..+++++.|+++||+|||+++..+.++.++
T Consensus        17 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~~~------~~~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~   90 (406)
T PRK15402         17 CLVLFEFATYIANDMIQPGMLAVVEDFNAGAEW------VPTSMTAYLAGGMFLQWLLGPLSDRIGRRPVMLAGVAFFIL   90 (406)
T ss_pred             HHHHHHHHHHhhhhhHhcchHHHHHHhCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHH
Confidence            455566666778888889999999999999998      99999999999999999999999999999999999999999


Q ss_pred             HHHHHhccchHHHHHHHHHHHhhhccchhhH-HHHHhhhccchhhhHHHHHHHHHHHHHHhHHHHhhhhhcCCCCCCCCc
Q 015847          125 FNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNL  203 (399)
Q Consensus       125 ~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~i~~~l~~~~~~~~~~  203 (399)
                      +.+.+.++++++.+++.|+++|++.+...+. .+.+.|.+|+++|++.+++......+|..++|.+++.+.+       .
T Consensus        91 ~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~-------~  163 (406)
T PRK15402         91 TCLAILLAQSIEQFTLLRFLQGIGLCFIGAVGYAAIQESFEEADAIKITALMANVALLAPLLGPLVGAALIH-------V  163 (406)
T ss_pred             HHHHHHHHccHHHHHHHHHHHHhHhhhHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------c
Confidence            9999999999999999999999998887664 8899999999999999999988888999999999999987       4


Q ss_pred             ccccccccCCcchhhHHHHHHHHHHHHH-HHHhcccCCCCCCCCCCccchhhhhhhhhhhhhhhccccCCcccccccccc
Q 015847          204 FSSESLFGKFPYFLPCLCISLFAFGVTI-AAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKNW  282 (399)
Q Consensus       204 ~gw~~~f~~~~~~~~~~~~~~~~~~~~~-~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  282 (399)
                      .+||+.|         .+.++..++..+ .....||++++.+++.+. +                  +..++.++.+++|
T Consensus       164 ~~w~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~------------------~~~~~~~~~~~~~  215 (406)
T PRK15402        164 LPWRGMF---------VLFAALAALSFFGLWRAMPETAGRVGEKLSL-K------------------ELGRDYKLVLKNR  215 (406)
T ss_pred             cCccHHH---------HHHHHHHHHHHHHHHHhCCCCCccccccccH-H------------------HHHHHHHHHHcCc
Confidence            5555544         665555555443 334566654322111000 0                  0011345678889


Q ss_pred             hhHHHHHHHHHHHhhhhhHHHHHHHhhcCCcccCccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHH
Q 015847          283 PLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGV  362 (399)
Q Consensus       283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  362 (399)
                      +++...+..++.......+..+.|.++.+.     +|+++.+.+.......++..++. ++.+++.||.++++.+..+.+
T Consensus       216 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~-----~g~~~~~~g~~~~~~~~~~~~g~-~~~g~l~~r~~~~~~~~~~~~  289 (406)
T PRK15402        216 RFVAGALALGLVSLPLLAWIALSPVILISG-----EQLSSYEYGLLQVPVFGALIAGN-LTLARLTSRRPLRSLIRMGLW  289 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-----hCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHhcCHHHHHHHHHH
Confidence            888877776666655556666677776554     78899999988777777787887 488999999999999888887


Q ss_pred             HHHHHHhHHhHH
Q 015847          363 LTIPLLTSYPYI  374 (399)
Q Consensus       363 ~~~~~~~~~~~~  374 (399)
                      +..++...+...
T Consensus       290 ~~~~g~~~~~~~  301 (406)
T PRK15402        290 PMVAGLLLAALA  301 (406)
T ss_pred             HHHHHHHHHHHH
Confidence            777666665543

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=99.96  E-value=5.3e-28  Score=236.01  Aligned_cols=189  Identities=19%  Similarity=0.245  Sum_probs=164.4

Q ss_pred             HHHHHHHHHHhhccccchhhhHHHHHHHhccCccccchhhhhhHHHHHHHHHHHhhhhcccccccccCCchhhHHHHHHH
Q 015847           43 LFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASV  122 (399)
Q Consensus        43 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~  122 (399)
                      ++.+.++.+..++....+...+|.+.+++|.+..+      .+++.+++.++.+++++++|+++||+|||++++++.++.
T Consensus       169 ~~i~~l~~~~~g~d~~~is~ilp~i~~~~gls~~~------~g~l~s~~~lG~iiG~li~G~LsDR~GRR~~lii~lil~  242 (742)
T TIGR01299       169 FFVLGLALMADGVEVFVVGFVLPSAEKDLCIPDSG------KGMLGLIVYLGMMVGAFFWGGLADKLGRKQCLLICLSVN  242 (742)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHH
Confidence            33455566666777777888999999999999988      999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhccchHHHHHHHHHHHhhhccchhhH-HHHHhhhccchhhhHHHHHHHHHHHHHHhHHHHhhhhhcCCCCCCC
Q 015847          123 VIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYP  201 (399)
Q Consensus       123 ~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~i~~~l~~~~~~~~  201 (399)
                      +++.++++++++++.++++|++.|++.+...+. .++++|++|+++|++.+++..++..+|.++++.++..+..      
T Consensus       243 ~i~~ll~afa~s~~~llv~R~l~G~g~g~~~p~~~~~isE~~p~~~Rg~~~g~~~~~~~iG~ila~~la~~il~------  316 (742)
T TIGR01299       243 GFFAFFSSFVQGYGFFLFCRLLSGFGIGGAIPIVFSYFAEFLAQEKRGEHLSWLCMFWMIGGIYAAAMAWAIIP------  316 (742)
T ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------
Confidence            999999999999999999999999998887775 9999999999999999999999999999999999988876      


Q ss_pred             Cccccccc----ccCCcchhhHHHHHHHHHHHHHHHHhcccCCCCCC
Q 015847          202 NLFSSESL----FGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHN  244 (399)
Q Consensus       202 ~~~gw~~~----f~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~  244 (399)
                       .+||+..    +...+|+..+++.+++.++.++..+++||+|++..
T Consensus       317 -~~G~~~~~g~~~~~~gWR~l~~i~~lp~ll~ll~~~~lPESPrwL~  362 (742)
T TIGR01299       317 -HYGWSFQMGSAYQFHSWRVFVIVCAFPCVFAIGALTFMPESPRFFL  362 (742)
T ss_pred             -hccchhccccccccccHHHHHHHHHHHHHHHHHHHHHcCCCHHHHH
Confidence             5666532    22356888888888888877778888999988643

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=99.96  E-value=1.7e-27  Score=227.76  Aligned_cols=300  Identities=13%  Similarity=0.105  Sum_probs=205.8

Q ss_pred             hHHHHHHHHHHHhhccccchhhhHHHHHHHhccCccccchhhhhhH-HHHHHHHHHHhhhhcccccccccCCchhhHHHH
Q 015847           41 TELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGY-VGSSFMFGRALTSVFWGLVADRYGRKPVIIMGT  119 (399)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~  119 (399)
                      +.+....++.+++.++...+....|.+.++++.+.++.. .....+ ..++..++..++++++|+++||+|||+++.++.
T Consensus        16 ~~~~~~~~g~~~~~~d~~~~~~~~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~l~~~~   94 (490)
T PRK10642         16 KAITAASLGNAMEWFDFGVYGFVAYALGKVFFPGADPSV-QMIAALATFSVPFLIRPLGGLFFGMLGDKYGRQKILAITI   94 (490)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHH
Confidence            445567788999999999999999999999876553310 111111 257788999999999999999999999999999


Q ss_pred             HHHHHHHHHHhccchHHH--------HHHHHHHHhhhccchhh-HHHHHhhhccchhhhHHHHHHHHHHHHHHhHHHHhh
Q 015847          120 ASVVIFNTLFGLSVNFWM--------AVLTRFLLGSLNGLLGP-IKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALG  190 (399)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~--------l~~~r~l~G~~~~~~~~-~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~i~  190 (399)
                      ++++++.+++++++|++.        ++++|+++|++.|...+ ..++++|++|+++|++..++...+..+|..+|+.+.
T Consensus        95 ~l~~i~~~~~a~~~~~~~~g~~a~~~l~~~R~l~G~g~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~G~~lg~~~~  174 (490)
T PRK10642         95 VIMSISTFCIGLIPSYATIGIWAPILLLLCKMAQGFSVGGEYTGASIFVAEYSPDRKRGFMGSWLDFGSIAGFVLGAGVV  174 (490)
T ss_pred             HHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHhHhhHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999874        88999999999888777 499999999999999999999988888888888776


Q ss_pred             hhhcCCCCCCCCcccccccccCCcchhhHHHHHHHHHHHHHHHHhcccCCCCCCCCCCccchhhhhhhhhhhhhhhcccc
Q 015847          191 GFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGR  270 (399)
Q Consensus       191 ~~l~~~~~~~~~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (399)
                      ..+......        ..+..++||.++++.++++++.++....+||++++...+++.++..       .+.   ..+.
T Consensus       175 ~~~~~~~~~--------~~~~~~gWR~~f~i~~~~~l~~~~~~~~~~esp~~~~~~~~~~~~~-------~~~---~~~~  236 (490)
T PRK10642        175 VLISTIVGE--------ANFLDWGWRIPFFIALPLGIIGLYLRHALEETPAFQQHVDKLEQGD-------REG---LQDG  236 (490)
T ss_pred             HHHHHhcCH--------HHhcCccHHHHHHHHHHHHHHHHHHHHcCCCChhHHHHHHhhhhhc-------ccc---cccc
Confidence            554321000        0000344555557766666655555567788765321111000000       000   0001


Q ss_pred             CCccccccccc-chhHH-HHHHHHHHHhhhhhHHHHHHHhhcCCcccCccccchhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 015847          271 EATPKKSLLKN-WPLMS-SIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLE  348 (399)
Q Consensus       271 ~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~  348 (399)
                      .+.+.++++++ ++.+. .....++..........++|.|+.+.     +|++..+.+.......++..++. ++.+++.
T Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~-----~g~s~~~~~~~~~~~~~~~~~~~-~~~g~l~  310 (490)
T PRK10642        237 PKVSFKEIATKHWRSLLTCIGLVIATNVTYYMLLTYMPSYLSHN-----LHYSEDHGVLIIIAIMIGMLFVQ-PVMGLLS  310 (490)
T ss_pred             ccCCHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----cCCCHHHHHHHHHHHHHHHHHHH-HHHHHHH
Confidence            11223344442 22222 22223334455566777888888654     67888777777777778888877 4889999


Q ss_pred             HHhcchhHHHHHHHHHH
Q 015847          349 RILGPIMVARIAGVLTI  365 (399)
Q Consensus       349 ~~~~~~~~~~~~~~~~~  365 (399)
                      ||+|||+.+..+.+...
T Consensus       311 dr~grr~~~~~~~~~~~  327 (490)
T PRK10642        311 DRFGRRPFVILGSVALF  327 (490)
T ss_pred             HHhccHHHHHHHHHHHH
Confidence            99999998877765433

>PRK03699 putative transporter; Provisional

Probab=99.96  E-value=4.7e-27  Score=218.85  Aligned_cols=283  Identities=12%  Similarity=0.136  Sum_probs=217.1

Q ss_pred             hhHHHHHHHHHHHhhccccchhhhHHHHHHHhccCccccchhhhhhHHHHHHHHHHHhhhhcccccccccCCchhhHHHH
Q 015847           40 ITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGT  119 (399)
Q Consensus        40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~  119 (399)
                      ++..+...+..++.........+.+|.+.+++|+|+.+      .+++.+.+.++..+++++.|++.||+|||+++..+.
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~~~s~~~------~g~~~s~~~~~~~i~~~~~g~l~dr~g~r~~~~~~~   79 (394)
T PRK03699          6 IKLTWISFLSYALTGALVIVTGMVMGPIAEYFNLPVSS------MSNTFTFLNAGILISIFLNAWLMEIIPLKRQLIFGF   79 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence            34455666777777777788889999999999999999      999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhccchHHHHHHHHHHHhhhccchhh-HHHHHhhhccchhhhHHHHHHHHHHHHHHhHHHHhhhhhcCCCC
Q 015847          120 ASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGP-IKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAE  198 (399)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~-~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~i~~~l~~~~~  198 (399)
                      ++.+++.++++++++++.+++.|++.|++.+...+ ..+++.|++|+++|+++++..+....+|..++|.+.+.+.+.  
T Consensus        80 ~~~~i~~~l~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~--  157 (394)
T PRK03699         80 ALMILAVAGLMFSHSLALFSIAMFVLGVVSGITMSIGTFLITHVYEGKQRGSRLLFTDSFFSMAGMIFPIIAAYLLAR--  157 (394)
T ss_pred             HHHHHHHHHHHHcchHHHHHHHHHHHHHhhHhhccchhHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--
Confidence            99999999999999999999999999998887666 488999999999999999999999999999999998887641  


Q ss_pred             CCCCcccccccccCCcchhhHHHHHHHHHHHHHHHHhcccCCCCCCCCCCccchhhhhhhhhhhhhhhccccCCcccccc
Q 015847          199 KYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSL  278 (399)
Q Consensus       199 ~~~~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  278 (399)
                          ..|||+.|         ...+++.++..+..+. ++.|+.++++++  +.               + +   ..+. 
T Consensus       158 ----~~gw~~~f---------~~~~~~~~~~~~~~~~-~~~p~~~~~~~~--~~---------------~-~---~~~~-  201 (394)
T PRK03699        158 ----SIEWYWVY---------ACIGLVYVAIFILTLF-SEFPALGKHAPK--AD---------------K-P---VAKE-  201 (394)
T ss_pred             ----cccHHHHH---------HHHHHHHHHHHHHHHh-cCCccccccCcc--cc---------------C-c---cccc-
Confidence                24555444         6666555544433332 222211111000  00               0 0   0011 


Q ss_pred             cccchhHHHHHHHHHHHhhhhhHHHHHHHhhcCCcccCccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHH
Q 015847          279 LKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVAR  358 (399)
Q Consensus       279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  358 (399)
                      ..++.++...+..++.......+..++|.|+++.     +|+++.+.+.+.+...++..+++. +.+++.||+++|+.+.
T Consensus       202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~-----~g~s~~~~~~~~~~~~~~~~ig~~-~~g~l~dr~~~~~~l~  275 (394)
T PRK03699        202 KWGIGVLFLAIAALLYILAQLTFISWVPEYAQKK-----FGMSLEDAGNLVSNFWMAYMVGMW-IFSFIVRFFDLQRILT  275 (394)
T ss_pred             cCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----cCCChHHhhHHHHHHHHHHHHHHH-HHHHHHHHhchhhHHH
Confidence            1235566666666666666777888999998665     789999999999999999999985 8899999999999887


Q ss_pred             HHHHHHHHHHhHHh
Q 015847          359 IAGVLTIPLLTSYP  372 (399)
Q Consensus       359 ~~~~~~~~~~~~~~  372 (399)
                      ....+..+.+.++.
T Consensus       276 ~~~~~~~~~~~~~~  289 (394)
T PRK03699        276 VLAGLALVLMYLFV  289 (394)
T ss_pred             HHHHHHHHHHHHHH
Confidence            77666655554443

>PRK10504 putative transporter; Provisional

Probab=99.96  E-value=4.7e-27  Score=224.23  Aligned_cols=306  Identities=15%  Similarity=0.128  Sum_probs=231.0

Q ss_pred             hhHHHHHHHHHHHhhccccchhhhHHHHHHHhccCccccchhhhhhHHHHHHHHHHHhhhhcccccccccCCchhhHHHH
Q 015847           40 ITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGT  119 (399)
Q Consensus        40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~  119 (399)
                      .+.++.++...++..++.....+.+|.+.+++|.+..+      .+++.+.+.++..++.+++|+++||+|||++++.+.
T Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~------~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~   82 (471)
T PRK10504          9 RWQLWIVAFGFFMQSLDTTIVNTALPSMAQSLGESPLH------MHMVIVSYVLTVAVMLPASGWLADRVGVRNIFFTAI   82 (471)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCcCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHH
Confidence            34566777788888888888999999999999999998      999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhccchHHHHHHHHHHHhhhccchhhH-HHHHhhhccchhhhHHHHHHHHHHHHHHhHHHHhhhhhcCCCC
Q 015847          120 ASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAE  198 (399)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~i~~~l~~~~~  198 (399)
                      ++.+++.++++++++++.+++.|+++|++.+...+. .+++.|.+|+++|++++++.+...++|..+||.+++.+.+   
T Consensus        83 ~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~g~l~~---  159 (471)
T PRK10504         83 VLFTLGSLFCALSGTLNELLLARVLQGVGGAMMVPVGRLTVMKIVPREQYMAAMTFVTLPGQVGPLLGPALGGLLVE---  159 (471)
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHh---
Confidence            999999988889999999999999999998887775 8899999999999999999999999999999999999998   


Q ss_pred             CCCCcccccccccCCcchhhHHHHHHHHHHHHHH-HHhcccCCCCCCCCCCccchhhh---------hhhhhhh------
Q 015847          199 KYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIA-AFWLPETLHRHNDDDDSCDVSYD---------ALESASA------  262 (399)
Q Consensus       199 ~~~~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~-~~~~~e~~~~~~~~~~~~~~~~~---------~~~~~~~------  262 (399)
                          ..|||+.|         .+......+..+. ....|+.+... .+.+.......         ..+....      
T Consensus       160 ----~~gw~~~f---------~~~~~~~~l~~~~~~~~~~~~~~~~-~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  225 (471)
T PRK10504        160 ----YASWHWIF---------LINIPVGIIGAIATLMLMPNYTMQT-RRFDLSGFLLLAVGMATLTLALDGSKGLGLSPL  225 (471)
T ss_pred             ----hccHHHHH---------HHHHHHHHHHHHHHHHhCCCccccC-CCCChHHHHHHHHHHHHHHHHHhcCCcCCcchH
Confidence                45565554         5555444443333 33344432211 11111000000         0000000      


Q ss_pred             ----------------hhhhccccCCcccccccccchhHHHHHHHHHHHhhhhhHHHHHHHhhcCCcccCccccchhhHH
Q 015847          263 ----------------EVKEEEGREATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVG  326 (399)
Q Consensus       263 ----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g  326 (399)
                                      ..++++..++....++++||+++......++..........+.|.|.+..     .|.++.+.+
T Consensus       226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-----~g~~~~~~g  300 (471)
T PRK10504        226 AIAGLVAVGVVALLLYLLHARNNNRALFSLKLFRTRTFSLGLAGSFAGRIGSGMLPFMTPVFLQIG-----LGFSPFHAG  300 (471)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCCCccCHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----cCCCHHHHH
Confidence                            00111111222234578999998888877777777767777888887755     788999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHhHHhHH
Q 015847          327 EVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYI  374 (399)
Q Consensus       327 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  374 (399)
                      +......++..++. ++.+++.||+++|+.+..+..+.++...++.+.
T Consensus       301 ~~~~~~~~~~~~~~-~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~  347 (471)
T PRK10504        301 LMMIPMVLGSMGMK-RIVVQVVNRFGYRRVLVATTLGLALVSLLFMLV  347 (471)
T ss_pred             HHHHHHHHHHHHHH-HHHHHHHHHcCchHHHHHHHHHHHHHHHHHHhc
Confidence            99988888888777 478999999999999988888777766555443

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=99.96  E-value=5.5e-27  Score=219.15  Aligned_cols=263  Identities=15%  Similarity=0.191  Sum_probs=208.0

Q ss_pred             HHHHHHHhhccccchhhhHHHHHHHhccCccccchhhhhhHHHHHHHHHHHhhhhcccccccccCCchhhHHHHHHHHHH
Q 015847           46 IWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIF  125 (399)
Q Consensus        46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~  125 (399)
                      +.+..+..........|.+|.+.+++|.+..+      .++..+++.++..+++++.|+++||+|||++++.+.++.+++
T Consensus        21 ~~~~~~~~~~~~~~~~p~l~~i~~~~~~~~~~------~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~   94 (413)
T PRK15403         21 LILYDFAAYLTTDLIQPGIINVVRDFNADVSL------APASVSLYLAGGMALQWLLGPLSDRIGRRPVLITGALIFTLA   94 (413)
T ss_pred             HHHHHHHHHHHHHhhccCHHHHHHHhCCCHHH------HHHHHHHHHHHHHHHHHhhhHHHHHcCchHHHHHHHHHHHHH
Confidence            44555666778889999999999999999999      999999999999999999999999999999999999999999


Q ss_pred             HHHHhccchHHHHHHHHHHHhhhccchhhH-HHHHhhhccchhhhHHHHHHHHHHHHHHhHHHHhhhhhcCCCCCCCCcc
Q 015847          126 NTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLF  204 (399)
Q Consensus       126 ~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~i~~~l~~~~~~~~~~~  204 (399)
                      .++++++++++.++++|+++|++.+...+. ..++.|++|+++|++++++......+|..+||.+++.+.+       ..
T Consensus        95 ~~~~~~a~~~~~l~~~r~l~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lg~~l~~-------~~  167 (413)
T PRK15403         95 CAATLFTTSMTQFLIARFIQGTSICFIATVGYVTVQEAFGQTKGIKLMAIITSIVLVAPIIGPLSGAALMH-------FV  167 (413)
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------hc
Confidence            999999999999999999999987765554 7889999999999999999999999999999999999987       44


Q ss_pred             cccccccCCcchhhHHHHHHHHHHHHHH-HHhcccCCCCCCCCCCccchhhhhhhhhhhhhhhccccCCcccccccccch
Q 015847          205 SSESLFGKFPYFLPCLCISLFAFGVTIA-AFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKNWP  283 (399)
Q Consensus       205 gw~~~f~~~~~~~~~~~~~~~~~~~~~~-~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  283 (399)
                      |||+.|         ++.++..++..+. .+.+||++++++++.+ .+                  ...+..++.++||.
T Consensus       168 gw~~~f---------~~~~~~~~i~~~~~~~~lp~~~~~~~~~~~-~~------------------~~~~~~~~ll~~~~  219 (413)
T PRK15403        168 HWKVLF---------AIIAVMGLIAFVGLLLAMPETVKRGAVPFS-AK------------------SVLRDFRNVFRNRL  219 (413)
T ss_pred             CHHHHH---------HHHHHHHHHHHHHHHHhCCCCccccCCCCC-hH------------------HHHHHHHHHHcCHH
Confidence            555544         6666666655443 4557876532111100 00                  01124557789999


Q ss_pred             hHHHHHHHHHHHhhhhhHHHHHHHhhcCCcccCccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcch
Q 015847          284 LMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPI  354 (399)
Q Consensus       284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~  354 (399)
                      ++...+..++.......+..+.|.++.+.     +|+++.+.++.......+..++......++.|+.++|
T Consensus       220 ~~~~~l~~~~~~~~~~~~~~~~P~~l~~~-----~g~s~~~~gl~~~~~~~~~~i~~~l~~~~~~~~~~~~  285 (413)
T PRK15403        220 FLTGAATLSLSYIPMMSWVAVSPVILIDA-----GGMTTSQFAWTQVPVFGAVIVANAIVARFVKDPTEPR  285 (413)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhChHHHHHh-----cCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchh
Confidence            99888887777777777777888888775     7899999999888777787777654444444544443

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=99.96  E-value=8.6e-27  Score=217.15  Aligned_cols=283  Identities=20%  Similarity=0.209  Sum_probs=215.8

Q ss_pred             HHHHHHHHhhccccchhhhHHHHHHHhccCccccchhhhhhHHHHHHHHHHHhhhhcccccccccCCchhhHHHHHHHHH
Q 015847           45 SIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVI  124 (399)
Q Consensus        45 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~  124 (399)
                      ......+....+.....+.+|.+.+++|.++.+      .++..+.+.++..+++++.|+++||+|||+++..+.++..+
T Consensus         7 ~~~~~~~~~~~~~~~~~~~lp~~~~~~~~s~~~------~~~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~i   80 (392)
T PRK10473          7 CSFALVLLYPAGIDMYLVGLPRIAADLNASEAQ------LHIAFSVYLAGMAAAMLFAGKIADRSGRKPVAIPGAALFII   80 (392)
T ss_pred             HHHHHHHHHHHHHHHHhhhHHHHHHHhCCCHHH------HHHHHHHHHHHHHHHHHhHhHHHHHhCChHHHHHHHHHHHH
Confidence            444555666666677778999999999999999      99999999999999999999999999999999999999999


Q ss_pred             HHHHHhccchHHHHHHHHHHHhhhccchhh-HHHHHhhhccchhhhHHHHHHHHHHHHHHhHHHHhhhhhcCCCCCCCCc
Q 015847          125 FNTLFGLSVNFWMAVLTRFLLGSLNGLLGP-IKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNL  203 (399)
Q Consensus       125 ~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~-~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~i~~~l~~~~~~~~~~  203 (399)
                      +.+++..+++.+.+++.|+++|++.+...+ ..+++.|.+|+++|+++++..+....+|..++|.+++.+.+       .
T Consensus        81 ~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~i~~~~~~~i~~~l~~-------~  153 (392)
T PRK10473         81 ASLLCSLAETSSLFLAGRFLQGIGAGCCYVVAFAILRDTLDDRRRAKVLSLLNGITCIIPVLAPVLGHLIML-------K  153 (392)
T ss_pred             HHHHHHHhCcHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------C
Confidence            999999999999999999999999887666 59999999999999999999999999999999999999876       3


Q ss_pred             ccccccccCCcchhhHHHHHHHHHHHH-HHHHhcccCCCCCCCCCCccchhhhhhhhhhhhhhhccccCCcccccccccc
Q 015847          204 FSSESLFGKFPYFLPCLCISLFAFGVT-IAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKNW  282 (399)
Q Consensus       204 ~gw~~~f~~~~~~~~~~~~~~~~~~~~-~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  282 (399)
                      .|||..         +.+.++..++.. +....+||++++++++++  +                   ..+..++.++++
T Consensus       154 ~g~~~~---------~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~--~-------------------~~~~~~~~~~~~  203 (392)
T PRK10473        154 FPWQSL---------FYTMAAMGILVLLLSLFILKETRPARAPAAS--S-------------------KPRENSESLLNR  203 (392)
T ss_pred             cChHHH---------HHHHHHHHHHHHHHHHHHcCCCCCcccCCcc--c-------------------hHHHHHHHHhCH
Confidence            445444         366655555433 345566776432211100  0                   001223456777


Q ss_pred             hhHHHHHHHHHHHhhhhhHHHHHHHhhcCCcccCccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHH
Q 015847          283 PLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGV  362 (399)
Q Consensus       283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  362 (399)
                      +++...+...+.......+..+.|.+..+.     +|+++.+.+.+....+++.+++.. ..+++.||+++|+.+..+..
T Consensus       204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~g~~~~~~~~~~~~~~~~~i~~~~-~~~~l~~r~g~~~~~~~~~~  277 (392)
T PRK10473        204 FFLSRLVITTLSVTVILTFVNTSPVLLMEQ-----MGFSRGEYAIIMALTAGVSMTVSF-STPFALGIFKPRTLMLTSQV  277 (392)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCHHHHHHH-----cCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHhcCHHHHHHHHHH
Confidence            766544444433333334444555555443     788999999999999999999984 88999999999999888888


Q ss_pred             HHHHHHhHHhHHHH
Q 015847          363 LTIPLLTSYPYIAM  376 (399)
Q Consensus       363 ~~~~~~~~~~~~~~  376 (399)
                      +..++...+...+.
T Consensus       278 ~~~~~~~~~~~~~~  291 (392)
T PRK10473        278 LFLAAGITLALSPS  291 (392)
T ss_pred             HHHHHHHHHHHHHH
Confidence            77777666555443

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=99.96  E-value=1.4e-27  Score=221.26  Aligned_cols=275  Identities=17%  Similarity=0.165  Sum_probs=209.4

Q ss_pred             HHHHhhccccchhhhHHHHHHHhccCccccchhhhhhHHHHHHHHHHHhhhhcccccccccCCchhhHHHHHHHHHHHHH
Q 015847           49 IVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTL  128 (399)
Q Consensus        49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~  128 (399)
                      .++.............|.+.+++|.+..+      .+++.+++.++..+++++.|+++||+|||+++..+.++.+++.++
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~g~s~~~------~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~   76 (379)
T TIGR00881         3 GYAAYYLVRKNFALAMPYLVEEIGLSKTD------LGLLLSSFSIAYGISKFVMGSVSDRSNPRVFLPIGLILCAIVNLF   76 (379)
T ss_pred             hhhHHHHhHHhhhhhhHHHHHHhCCCHhH------HHHHHHHHHHHHHhhhhhhhHHHHhhCCeehhHHHHHHHHHHHHH
Confidence            34556677778888899999999999999      999999999999999999999999999999999999999999999


Q ss_pred             HhccchHHHHHHHHHHHhhhccchhhH-HHHHhhhccchhhhHHHHHHHHHHHHHHhHHH-HhhhhhcCCCCCCCCcccc
Q 015847          129 FGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGP-ALGGFLAQPAEKYPNLFSS  206 (399)
Q Consensus       129 ~~~~~~~~~l~~~r~l~G~~~~~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p-~i~~~l~~~~~~~~~~~gw  206 (399)
                      ++++++++.+++.|++.|++.+...+. .+++.|++|+++|++++++.+.+..+|..++| .+++.+.+       ..+|
T Consensus        77 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~-------~~~~  149 (379)
T TIGR00881        77 FGFSTSLWVMAALWALNGIFQGMGWPPCGRTVTKWFSRSERGTWVSFWNCSHNVGGGLLPPLVLFGIAE-------LYSW  149 (379)
T ss_pred             HHHhhhHHHHHHHHHHHHhhccccCCchHHHHHHhcCHhhheeeEeehhccchhHHHHHHHHHHHHHHh-------cCCc
Confidence            999999999999999999998887774 99999999999999999999999999999999 56666665       3445


Q ss_pred             cccccCCcchhhHHHHHHHHHHH-HHHHHhcccCCCCCCCCCCccchhhhhhhhhhhhhhhccccCCcccccccccchhH
Q 015847          207 ESLFGKFPYFLPCLCISLFAFGV-TIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKNWPLM  285 (399)
Q Consensus       207 ~~~f~~~~~~~~~~~~~~~~~~~-~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  285 (399)
                      |..         +.+.+++.++. ++..+..||++++.+.++++++.. ++.++..++.+++....+...++.+++|.++
T Consensus       150 ~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  219 (379)
T TIGR00881       150 HWV---------FIVPGIIAIIVSLICFLLLRDSPQSCGLPPAEEMPN-EEPDGDAEKKEEELTKKQIFLQYVLLNKVLW  219 (379)
T ss_pred             hhH---------HHHHHHHHHHHHHHHheeeCCCccccccCccccCcc-cccccccccccccccchHHHHHHHHhcchHH
Confidence            444         46655555443 444555666554322111111100 0000000000011111122345677889988


Q ss_pred             HHHHHHHHHHhhhhhHHHHHHHhhcCCcccCccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 015847          286 SSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILG  352 (399)
Q Consensus       286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~  352 (399)
                      ...+..++..........+.|.|..+.     +|+++.+.+.......++.++++. +.+++.||..
T Consensus       220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~g~~~~~~~~~~~~~~~~~~~~~~-~~g~l~~r~~  280 (379)
T TIGR00881       220 YISLGYVFVYVVRTGILDWSPLYLTQE-----KGFSKEKASWAFTLYELGGLVGTL-LAGWLSDKLF  280 (379)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH-----hCCCHHHHHHHHHHHHHHcchhHH-HHHHHHHHHc
Confidence            888888887777778888899888765     788999999999999999999985 8899999863

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

Probab=99.96  E-value=8.1e-28  Score=212.06  Aligned_cols=289  Identities=14%  Similarity=0.148  Sum_probs=238.5

Q ss_pred             CCChhHHHHHHHHHHHhhccccchhhhHHHHHHHhccCccccchhhhhhHHHHHHHHHHHhhhhcccccccccCCchhhH
Q 015847           37 GLPITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVII  116 (399)
Q Consensus        37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~dr~Grr~~l~  116 (399)
                      +...+.++...+...+.........+..+.+.+++|+|+.|      .+++.++..+...+..++.|.+.||+|.|++..
T Consensus        10 ~~~~~~L~~S~~af~v~F~VW~l~s~l~~~i~~~~~LS~~q------~~ll~aiPil~GallRl~~g~l~drfGgR~~~~   83 (417)
T COG2223          10 RIARRNLWLSTLAFDVGFMVWTLFSPLGVFIKSDFGLSEGQ------KGLLVAIPILVGALLRLPYGFLTDRFGGRKWTI   83 (417)
T ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCHHH------HHHHHHHHHHHhHHHHHHHHhhhcccCchHHHH
Confidence            34456777777788888888888899999999999999999      999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhccc---hHHHHHHHHHHHhhhccchhhHHHHHhhhccchhhhHHHHHHHHHHHHHHhHHHHhhhhh
Q 015847          117 MGTASVVIFNTLFGLSV---NFWMAVLTRFLLGSLNGLLGPIKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFL  193 (399)
Q Consensus       117 ~~~~~~~~~~~~~~~~~---~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~i~~~l  193 (399)
                      ++.++..+-++..+++.   +++++++++++.|++.+.+....+.+++++|||++|.++|+.. ..++|..+...++..+
T Consensus        84 ~s~~l~~IP~~~~~~a~~~~~~~~ll~~gll~G~~GasFav~m~~~s~~fP~~~qG~AlGI~g-~GN~G~av~q~~~P~v  162 (417)
T COG2223          84 LSMLLLLIPCLGLAFAVTYPSTWQLLVIGLLLGLAGASFAVGMPNASFFFPKEKQGLALGIAG-AGNLGVAVAQLVAPLV  162 (417)
T ss_pred             HHHHHHHHHHHHHHHHccCCchHHHHHHHHHHhcccceehcccccccccCChhhhhHHHHHhc-cccccHHHHHHHHHHH
Confidence            99999999999888875   4559999999999999999989999999999999999999998 8888888888888777


Q ss_pred             cCCCCCCCCccc---ccccccCCcchhhHHHHHHHHH-HHHHHHHhcccCCCCCCCCCCccchhhhhhhhhhhhhhhccc
Q 015847          194 AQPAEKYPNLFS---SESLFGKFPYFLPCLCISLFAF-GVTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEG  269 (399)
Q Consensus       194 ~~~~~~~~~~~g---w~~~f~~~~~~~~~~~~~~~~~-~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  269 (399)
                      ..       ..|   |+..         ..+.....+ ..+..++...+.++.+...++..                   
T Consensus       163 ~~-------~~g~~~w~~~---------~~i~~~~l~v~~v~~~~~~~d~p~~r~~~~~~~-------------------  207 (417)
T COG2223         163 AV-------AFGFLAWRNV---------AGIYVVALAIAAVLAWLGMNDVPEHRASVKPQL-------------------  207 (417)
T ss_pred             HH-------HHhhHHHHHH---------HHHHHHHHHHHHHHHHHHhCCChhhhccccccc-------------------
Confidence            76       444   4433         233333333 34555666666554322211111                   


Q ss_pred             cCCcccccccccchhHHHHHHHHHHHhhhhhHHHHHHHhhcCCcccCccccchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015847          270 REATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLER  349 (399)
Q Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~  349 (399)
                        +...+.++++++.|...+.|+.....+.++..++|.|++++     ++.++.++|.......+.+.+.+ +.+|+++|
T Consensus       208 --~~~~~~v~~~~~~W~lsllY~~tFG~Fvgfs~~l~~~~~~~-----fg~~~~~Ag~~a~~f~~~g~l~R-p~GG~LsD  279 (417)
T COG2223         208 --PAQLKAVFSNKDTWLLSLLYFATFGGFVGFSAYLPMYLVTQ-----FGLSPVTAGLIAFLFPLIGALAR-PLGGWLSD  279 (417)
T ss_pred             --hhHHHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----cCCChhhHHHHHHHHHHHHHHHH-hccchhhh
Confidence              02455678899999999999999999999999999999998     99999999999999999999999 59999999


Q ss_pred             HhcchhHHHHHHHHHHHHHhHHhHHH
Q 015847          350 ILGPIMVARIAGVLTIPLLTSYPYIA  375 (399)
Q Consensus       350 ~~~~~~~~~~~~~~~~~~~~~~~~~~  375 (399)
                      |+|.+|++......++++........
T Consensus       280 R~Gg~rv~~~~f~~~~~~~~~l~~~~  305 (417)
T COG2223         280 RIGGRRVTLAVFVGMALAAALLSLFL  305 (417)
T ss_pred             hccchhHHHHHHHHHHHHHHHHHccc
Confidence            99999998888888877777665543

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=99.96  E-value=9.2e-27  Score=216.35  Aligned_cols=274  Identities=14%  Similarity=0.106  Sum_probs=204.4

Q ss_pred             HHHHHHHHHHHhhccccchhhhHHHHHHHhccCccccchhhhhhHHHHHHHHHHHhhhhcccccccccCCchhhHHHHHH
Q 015847           42 ELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTAS  121 (399)
Q Consensus        42 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~  121 (399)
                      .++.++.+.++..++........+.+.++++.+..+      .+++.+++.+++.+.++++|+++||+|||++++.+.++
T Consensus         4 ~f~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~------~~~~~~~~~l~~~l~~~~~G~laDr~grr~vl~~~~~~   77 (393)
T PRK11195          4 GFYAIMAAQFFSALADNALLFAAIALLKELHYPDWS------QPLLQMFFVLAYIVLAPFVGAFADSFPKGRVMFIANGI   77 (393)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHH------HHHHHHHHHHHHHHHHhhhhHhhhccCCchhhHHHHHH
Confidence            345667778887877666777777778999998888      99999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhccchHHHHHHHHHHHhhhccchhhH-HHHHhhhccchhhhHHHHHHHHHHHHHHhHHHHhhhhhcCCCCCC
Q 015847          122 VVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKY  200 (399)
Q Consensus       122 ~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~i~~~l~~~~~~~  200 (399)
                      ..+++++++++.+.   ++.|+++|++.+...|+ .+++.|++|+++|++++++.+....+|..+||.++|++.+     
T Consensus        78 ~~~~~~~~~~~~~~---~~~r~l~G~~~a~~~pa~~a~i~~~~~~~~~~~a~~~~~~~~~~~~~~Gp~lgG~l~~-----  149 (393)
T PRK11195         78 KLLGCLLMLFGIHP---LLAYGLVGIGAAAYSPAKYGILTELLPGEKLVKANGWMEGSTIAAILLGTVLGGALAD-----  149 (393)
T ss_pred             HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----
Confidence            98888877776664   67899999999998886 9999999999999999999999999999999999999986     


Q ss_pred             CCcccccccccCCcchhhHHHHHHHHHHHHHHHHhcccCCCCCCCCCCccchhhhhhhhhhhhhhhccccCCcccccccc
Q 015847          201 PNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLK  280 (399)
Q Consensus       201 ~~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  280 (399)
                        .          .|+.++.+.+...++..+....+||+++++++++.+....   .    ++.       ....+.+++
T Consensus       150 --~----------~~~~~~~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~---~----~~~-------~~~~~~l~~  203 (393)
T PRK11195        150 --P----------HAEAALAVCALIYLLAALFNLFIPRLGARRPGQSWNPIAL---L----RDF-------FHACRVLWR  203 (393)
T ss_pred             --H----------HHHHHHHHHHHHHHHHHHHHhcCCCCcccccccCCCHHHH---H----HHH-------HHHHHHHHh
Confidence              1          1333344444444444455566787653322111110000   0    000       011245677


Q ss_pred             cchhHHHHHHHHHHHhhhhhHHHHHHHhhcCCcccCccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHH
Q 015847          281 NWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIA  360 (399)
Q Consensus       281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  360 (399)
                      +|.+........+...........++.|.++.     +|.++.+.|.+....+++.++++. ..+++.||.++++.+..+
T Consensus       204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----lg~s~~~~G~~~~~~~~g~i~g~~-~~~~l~~~~~~~~~~~~g  277 (393)
T PRK11195        204 DKLGRFSLAGTTLFWGAGATLRFLVLAWAPVA-----LGITLNQPAYLQAVVAIGIAVGAG-AAARLVTLETVLRVLPAG  277 (393)
T ss_pred             CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----cCCChhHHHHHHHHHHHHHHHHHH-HHHHHhcCCcccchHHHH
Confidence            77766555544444444445555666676655     788999999999999999999985 778888888887777666


Q ss_pred             H
Q 015847          361 G  361 (399)
Q Consensus       361 ~  361 (399)
                      .
T Consensus       278 ~  278 (393)
T PRK11195        278 I  278 (393)
T ss_pred             H
Confidence            4

>PRK15075 citrate-proton symporter; Provisional

Probab=99.95  E-value=2.4e-26  Score=216.72  Aligned_cols=284  Identities=17%  Similarity=0.115  Sum_probs=195.4

Q ss_pred             hhHHHHHHHHHHHhhccccchhhhHHHHHHHhccCccccchhhhhhHHH-HH-----HHHHHHhhhhcccccccccCCch
Q 015847           40 ITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVG-SS-----FMFGRALTSVFWGLVADRYGRKP  113 (399)
Q Consensus        40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-----~~~~~~~~~~~~G~l~dr~Grr~  113 (399)
                      ++....++++.++++++...+....|.+.++++.++.+      .+... +.     ..++..+++++.|+++||+|||+
T Consensus        14 ~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~~~~~~~~~------~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~   87 (434)
T PRK15075         14 ARAILRVTSGNFLEMFDFFLFGFYATAIAKTFFPAGNE------FASLMLTFAVFGAGFLMRPLGAIVLGAYIDRVGRRK   87 (434)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCc------hHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhchHH
Confidence            44556788899999999999999999999999988876      44332 22     23334578899999999999999


Q ss_pred             hhHHHHHHHHHHHHHHhccchHH--------HHHHHHHHHhhhccchhh-HHHHHhhhccchhhhHHHHHHHHHHHHHHh
Q 015847          114 VIIMGTASVVIFNTLFGLSVNFW--------MAVLTRFLLGSLNGLLGP-IKAYACEIFREEHQALGLSTVSTAWGIGLI  184 (399)
Q Consensus       114 ~l~~~~~~~~~~~~~~~~~~~~~--------~l~~~r~l~G~~~~~~~~-~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~  184 (399)
                      +++.+.++.+++.++++++++++        .+++.|+++|++.+...+ ...+++|++|+++|++++++...+.++|..
T Consensus        88 ~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~~~~~g~~  167 (434)
T PRK15075         88 GLIVTLSIMASGTLLIAFVPGYATIGLAAPLLVLLGRLLQGFSAGVELGGVSVYLAEIATPGRKGFYTSWQSASQQVAVV  167 (434)
T ss_pred             HHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHhhCCcccchHHHHHHHHHHHHHHH
Confidence            99999999999999999999877        468899999999888776 489999999999999999999999888888


Q ss_pred             HHHHhhhhhcCCCCCC-CCcccccccccCCcchhhHHHHHHHHHHHHHHHHhcccCCCCCCCCCCccchhhhhhhhhhhh
Q 015847          185 IGPALGGFLAQPAEKY-PNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSYDALESASAE  263 (399)
Q Consensus       185 ~~p~i~~~l~~~~~~~-~~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~  263 (399)
                      +++.+++.+......+ ...+||         +.++++......+........||+++..++++                
T Consensus       168 ~g~~~g~~l~~~~~~~~~~~~gW---------r~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~----------------  222 (434)
T PRK15075        168 FAALLGYLLNQWLSPAQMAEWGW---------RIPFLIGCLIVPFIFLIRRSLEETEEFLARKH----------------  222 (434)
T ss_pred             HHHHHHHHHHHhCCHHHHhccch---------HHHHHHHHHHHHHHHHHHHhcCCCHHHHHhhh----------------
Confidence            8888887764311000 002344         44445543332222221122222210000000                


Q ss_pred             hhhccccCCcccccccccchhHHH-HHHHHHHHhhhhhHHHHHHHhhcCCcccCccccchhhHHHHHHHHHHHHHHHHHH
Q 015847          264 VKEEEGREATPKKSLLKNWPLMSS-IIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLS  342 (399)
Q Consensus       264 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~  342 (399)
                          +.+.....+...++++.+.. ....++..........+.|.|+++.     +|++..+.+.......++.+++. +
T Consensus       223 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~-----~g~~~~~~~~~~~~~~~~~~~~~-~  292 (434)
T PRK15075        223 ----RPSMREIFRSLAANWRIVLAGMLMVAMTTVSFYLITVYTPTFGKTV-----LHLSAADSLLVTLCVGVSNFIWL-P  292 (434)
T ss_pred             ----ccccccHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----cCCCHHHHHHHHHHHHHHHHHHH-H
Confidence                00001112223344444332 2233333444555667788888765     68888888888888888888888 4


Q ss_pred             HHHHHHHHhcchhHHHHHHHHH
Q 015847          343 LYPFLERILGPIMVARIAGVLT  364 (399)
Q Consensus       343 ~~~~l~~~~~~~~~~~~~~~~~  364 (399)
                      +.+++.||++||+....+..+.
T Consensus       293 ~~g~l~Dr~g~r~~~~~~~~~~  314 (434)
T PRK15075        293 IGGALSDRIGRRPVLIAFTVLA  314 (434)
T ss_pred             HHHHHHHHhcchHHHHHHHHHH
Confidence            8899999999999877665443

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=99.95  E-value=1.4e-26  Score=220.53  Aligned_cols=284  Identities=14%  Similarity=0.145  Sum_probs=215.0

Q ss_pred             ChhHHHHHHHHHHHhhccccchhhhHHHHHH----------------------HhccCccccchhhhhhHHHHHHHHHHH
Q 015847           39 PITELFSIWIIVLCTALPISSLFPFLYFMIK----------------------DFQIAKREEDIGSYAGYVGSSFMFGRA   96 (399)
Q Consensus        39 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~   96 (399)
                      ++.....++++..+.+.++...+...+.+.+                      |++.+..+      .|++.+++.+++.
T Consensus        17 r~~i~~~~~~~~~~~y~dr~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~------~g~~~s~~~~~~~   90 (465)
T TIGR00894        17 RLFLSFLLHICNVIIIAQRICLSLTMVAMVNKENSTDLACLSAENELDNIKNPNFKWSGAL------QGLILSSHFYGQI   90 (465)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhheEEEEEcccCCCCCCccccccccccccccCCCCCCCHHH------hhHHHHHHHHHHH
Confidence            3444445666666677777666666665554                      67788877      9999999999999


Q ss_pred             hhhhcccccccccCCchhhHHHHHHHHHHHHHHhcc--chHHHHHHHHHHHhhhccchhhH-HHHHhhhccchhhhHHHH
Q 015847           97 LTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLS--VNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLS  173 (399)
Q Consensus        97 ~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~--~~~~~l~~~r~l~G~~~~~~~~~-~~~~~~~~~~~~r~~~~~  173 (399)
                      +++++.|+++||+|||+++..+.++.+++.+++.++  .+++.+++.|+++|++.+...+. ..+++|++|+++|+++++
T Consensus        91 ~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~  170 (465)
T TIGR00894        91 IIQIPVGYLAGKYVFKWSIGIGMFLSSVISIVIPWAAGGGIALVVFCRVIQGLAQGSVSPATHKIIVKWAPPKERSRLLG  170 (465)
T ss_pred             HHHcchHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHhcccchhhHHHHHHhcCCHHHHHHHHH
Confidence            999999999999999999999999998888776543  56888999999999999998885 999999999999999999


Q ss_pred             HHHHHHHHHHhHHHHhhhhhcCCCCCCCCc-ccccccccCCcchhhHHHHHHHHHHHHHHHHh-cccCCCCCCCCCCccc
Q 015847          174 TVSTAWGIGLIIGPALGGFLAQPAEKYPNL-FSSESLFGKFPYFLPCLCISLFAFGVTIAAFW-LPETLHRHNDDDDSCD  251 (399)
Q Consensus       174 ~~~~~~~~g~~~~p~i~~~l~~~~~~~~~~-~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~-~~e~~~~~~~~~~~~~  251 (399)
                      +...+..+|..++|.+++.+.+       . .|||..|         .+.++..++..+.++. .+|+|+.+++.+++++
T Consensus       171 ~~~~~~~~g~~i~~~l~~~l~~-------~~~gw~~~f---------~i~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~  234 (465)
T TIGR00894       171 MSTSGFQLGTFIFLPISGWLCE-------SWGGWPMIF---------YVFGIVGCAWSLLWFVFPADDPSIHPCISKFEK  234 (465)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHh-------ccCCCCeeh---------hhhhHHHHHHHHHHHHHhcCCcccCCCCCHHHH
Confidence            9999999999999999999987       4 3666555         6666666655544443 4555433222111110


Q ss_pred             hhhhhhhhhhhhhhhccccCCcccccccccchhHHHHHHHHHHHhhhhhHHHHHHHhhcCCcccCccccchhhHHHHHHH
Q 015847          252 VSYDALESASAEVKEEEGREATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAI  331 (399)
Q Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~  331 (399)
                         +..++..+ .++++.+.+.++++.++++.++...+..++.......+.+++|.|+.+.     +|++..+.+...+.
T Consensus       235 ---~~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~-----~g~s~~~~g~~~~~  305 (465)
T TIGR00894       235 ---KYINSSLQ-GQKGSTRQSLPIKAIPKSLPVWAIWFAIFGHFWLYTILPTYLPTFISWV-----LRVSGKENGLLSSL  305 (465)
T ss_pred             ---HHHHhhcc-cccCCCCCCCCHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hCcChHHhHHHHHH
Confidence               11111100 0011111233567889999999999998888888888889999998776     78899999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhcch
Q 015847          332 TGFSLLVFQLSLYPFLERILGPI  354 (399)
Q Consensus       332 ~~~~~~~~~~~~~~~l~~~~~~~  354 (399)
                      ..++..++.. +.+++.||.++|
T Consensus       306 ~~~~~~i~~~-~~g~l~d~~~~~  327 (465)
T TIGR00894       306 PYLFAWLCSI-FAGYLADFLKSS  327 (465)
T ss_pred             HHHHHHHHHH-HHHHHHHHHHHc
Confidence            9999999884 889999987543

>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=99.95  E-value=6.5e-28  Score=208.43  Aligned_cols=302  Identities=40%  Similarity=0.638  Sum_probs=217.0

Q ss_pred             cchhhhHHHHHHHhccCccccc--hhhhhhHHHHHHHHHHHhhhhcccccccccCCchhhHHHHHHHHHHHHHHhccchH
Q 015847           58 SSLFPFLYFMIKDFQIAKREED--IGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNF  135 (399)
Q Consensus        58 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~  135 (399)
                      ....++.....++|+....+.+  ...+.|.+.+.+++.+.+.++.+|.++||+|||+++.+|++..++...+.+.+.|+
T Consensus        42 ~~L~~~~~~~V~~F~~a~~~~~~~~~~yaGflGSsF~ilQ~~sS~~~G~~SD~yGRkpvll~c~~~va~s~ll~~~S~~F  121 (451)
T KOG2615|consen   42 SSLYPFVVFMVRDFNIAIGEPDGASVFYAGFLGSSFSILQFISSPLWGCLSDRYGRKPVLLACLIGVALSYLLWALSRNF  121 (451)
T ss_pred             cchhHHHHHhhHHHHHhhCCcccccchhhhhHhhHHHHHHHHhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4445555566677766544433  66779999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhhccchhhHHHHHhhhccchhhhHHHHHHHHHHHHHHhHHHHhhhhhcCCCCCCCCcccccccccCCcc
Q 015847          136 WMAVLTRFLLGSLNGLLGPIKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPY  215 (399)
Q Consensus       136 ~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~i~~~l~~~~~~~~~~~gw~~~f~~~~~  215 (399)
                      ..++++|++.|+..|-..++.++++|++++|+|+++++.+++.+++|.++||.+||++..        +.  ..++++.+
T Consensus       122 ~afv~aR~l~Gi~kgnl~v~rAiisdV~sek~r~l~ms~v~~a~~lGfilGPmIGgyla~--------f~--~~~g~~p~  191 (451)
T KOG2615|consen  122 AAFVLARFLGGIFKGNLSVIRAIISDVVSEKYRPLGMSLVGTAFGLGFILGPMIGGYLAQ--------FS--SISGSYPF  191 (451)
T ss_pred             HHHHHHHHhhhhccCchHHHHHHHHhhcChhhccceeeeeehhhhcchhhcchhhhHHHh--------hH--hhhccCch
Confidence            777777999999999999999999999999999999999999999999999999999986        11  22335666


Q ss_pred             hhhHHHHHHHHHH-HHHHHHhcccCCCCCCCCCCccchhhhhhhhhhhhhhhccccCCcccccccccchhHHHHHHHHHH
Q 015847          216 FLPCLCISLFAFG-VTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKNWPLMSSIIVYCVF  294 (399)
Q Consensus       216 ~~~~~~~~~~~~~-~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  294 (399)
                      ..|.+...+.+.. .....+++||+.+.+++++ +....    ++..+.+++..+.........++|++.......+..+
T Consensus       192 alP~~~v~i~a~~~v~~~~~~lpETL~~rk~~~-~~~~~----~~~~~~~~~~~~~~~~~~v~~lrn~p~~~~i~~~~i~  266 (451)
T KOG2615|consen  192 ALPCLLVFILAAGDVTFFPWFLPETLPLRKRND-EHSTL----QEAADDRLALLKFARIFKVAALRNPPLLDFISVLRIF  266 (451)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCccccchhhcc-cccch----hhhhhhhhhhcchhhhhhhhhhcCccccchHHHHHHH
Confidence            6666665555555 5556788999976554441 11111    1111111111111122233456777766666677777


Q ss_pred             HhhhhhHHHHHHHhhcCCccc--CccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-hhHHHHHHHHHHHHHhHH
Q 015847          295 SLHDMAYSEIFSLWANSPKKL--GGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGP-IMVARIAGVLTIPLLTSY  371 (399)
Q Consensus       295 ~~~~~~~~~~~~~~~~~~~~~--~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~  371 (399)
                      ....+.+..+++.+..++...  +++|+++.+.|.+++..++.+.+.+..+.+.+.+..+. +-.+..+..++...++++
T Consensus       267 ~l~~~ly~~l~s~~~~t~~~l~~~rfg~ss~~~G~vl~~tGl~m~~~ql~~~~~l~~~~~~~~a~l~~~l~~~vP~~lll  346 (451)
T KOG2615|consen  267 GLHYFLYLELFSGLENTVLFLTHGRFGYSSMQQGKVLSTTGLLMLVIQLALVPILPRYKGNIKAVLLFSLLLIVPAFLLL  346 (451)
T ss_pred             HHHHHHHHHHHHHHHhhHHHhhcCccCCChhhheeeeehhhHHHHHHHHhccccccccccchhhHHHHHHHHHHHHHHHH
Confidence            777777777777777666555  66999999999999999999998886554444333332 233344444444444444


Q ss_pred             hHH
Q 015847          372 PYI  374 (399)
Q Consensus       372 ~~~  374 (399)
                      ...
T Consensus       347 s~~  349 (451)
T KOG2615|consen  347 SLA  349 (451)
T ss_pred             hcc
Confidence            433

>PRK03633 putative MFS family transporter protein; Provisional

Probab=99.95  E-value=5.7e-26  Score=210.65  Aligned_cols=276  Identities=15%  Similarity=0.157  Sum_probs=209.4

Q ss_pred             hHHHHHHHHHHHhhccccchhhhHHHHHHHhccCccccchhhhhhHHHHHHHHHHHhhhhcccccccccCCchhhHHHHH
Q 015847           41 TELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTA  120 (399)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~  120 (399)
                      +.++.+....++.........+.+|.+.+++|.|..+      .|++.+.+.++..+++++.|+++||+|||+++..+.+
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~s~~~------~G~~~s~~~l~~~~~~~~~g~l~dr~g~k~~~~~~~~   79 (381)
T PRK03633          6 RPVLLLLCGLLLLTLAIAVLNTLVPLWLAQEHLPTWQ------VGVVSSSYFTGNLVGTLLAGYVIKRIGFNRSYYLASL   79 (381)
T ss_pred             HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHcCCCHHH------HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence            4566777888888999999999999999999999999      9999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhccchHHHHHHHHHHHhhhccchhhH-HHHHhhhccchhhhHHHHHHHHHHHHHHhHHHHhhhhhcCCCCC
Q 015847          121 SVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEK  199 (399)
Q Consensus       121 ~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~i~~~l~~~~~~  199 (399)
                      +.+++.+.+++++|++.++++|+++|++.+...+. .+.+.|..++++|+++++..+.+.++|..+||.+++.+.+.   
T Consensus        80 ~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~---  156 (381)
T PRK03633         80 IFAAGCAGLGLMVGFWSWLAWRFVAGIGCAMIWVVVESALMCSGTSRNRGRLLAAYMMVYYLGTVLGQLLVSKVSTE---  156 (381)
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc---
Confidence            99999999999999999999999999998887774 77788899999999999999999999999999999998761   


Q ss_pred             CCCcccccccccCCcchhhHHHHHHHHHHHHHHHHhcccCCCCCCCCCCccchhhhhhhhhhhhhhhccccCCccccccc
Q 015847          200 YPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLL  279 (399)
Q Consensus       200 ~~~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  279 (399)
                          ..|     ...|    ... ......+. ..+.+.++++. +++                       ...+.++.+
T Consensus       157 ----~~~-----~~~~----~~~-~~~~~~~~-~~~~~~~~~~~-~~~-----------------------~~~~~~~~~  197 (381)
T PRK03633        157 ----LMS-----VLPW----VTG-LVLAAILP-LLFTRILNQQA-ENH-----------------------DSTSIWPML  197 (381)
T ss_pred             ----ccc-----hHHH----HHH-HHHHHHHH-HHHhcccCCCC-CCC-----------------------CCCCHHHHH
Confidence                111     1112    111 11111111 11212111110 000                       001233456


Q ss_pred             ccchhHHHHHHHHHHHhhhhhHHHHHHHhhcCCcccCccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHH
Q 015847          280 KNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARI  359 (399)
Q Consensus       280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  359 (399)
                      ++|.++......+...........++|.|.++      .|.++.+.+.+.+...++.++++. ..+++.||+++|+.+..
T Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~------~g~s~~~~g~~~~~~~~~~~~~~~-~~g~l~dr~~~~~~l~~  270 (381)
T PRK03633        198 KLRQARLGVNGCIISGIVLGSLYGLMPLYLNH------QGMSDASIGFWMALLVSAGILGQW-PIGRLADRFGRLLVLRV  270 (381)
T ss_pred             HhcchHHHHHHHHHHHHHHHHHHHHHHHHHHH------cCCCHHHHHHHHHHHHHHHHHHHh-hhHHHHHHcCcHHHHHH
Confidence            77776654444444444445566678888765      578888999999999999999985 78999999999998887


Q ss_pred             HHHHHHHHHhHH
Q 015847          360 AGVLTIPLLTSY  371 (399)
Q Consensus       360 ~~~~~~~~~~~~  371 (399)
                      +..+..++...+
T Consensus       271 ~~~~~~~~~~~~  282 (381)
T PRK03633        271 QVFVVILGSIAM  282 (381)
T ss_pred             HHHHHHHHHHHH
Confidence            777666655443

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=99.95  E-value=2.2e-26  Score=213.32  Aligned_cols=266  Identities=21%  Similarity=0.285  Sum_probs=207.1

Q ss_pred             ccccchhhhHHHHHHHhccCccccchhhhhhHHHHHHHHHHHhhhhcccccccccCCchhhHHHHHHHHHHHHHHhccch
Q 015847           55 LPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVN  134 (399)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~  134 (399)
                      +......|.+|.+.+++|.++.+      .++..+++.++..+++++.|+++||+|||+++..+.++.+++.+.+.++++
T Consensus         5 ~~~~~~~p~~~~~~~~~~~s~~~------~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~~~   78 (377)
T PRK11102          5 LAIDMYLPALPVIAADFGVSAGS------VQMTLSAYILGFAIGQLFYGPMADSFGRKPVILGGTLVFALAAVACALAQT   78 (377)
T ss_pred             hHHHHHhccHHHHHHHhCCCHHH------HHHHHHHHHHHHHHHHHhhchHHhhcCChHHHHHHHHHHHHHHHHHHHHcc
Confidence            34456779999999999999999      999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhhccchhhH-HHHHhhhccchhhhHHHHHHHHHHHHHHhHHHHhhhhhcCCCCCCCCcccccccccCC
Q 015847          135 FWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKF  213 (399)
Q Consensus       135 ~~~l~~~r~l~G~~~~~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~i~~~l~~~~~~~~~~~gw~~~f~~~  213 (399)
                      ++.+++.|++.|++.+...+. .+++.|++|+++|++++++.+....+|..++|.+++.+.+       ..|||      
T Consensus        79 ~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~-------~~~~~------  145 (377)
T PRK11102         79 IDQLIYMRFLHGLAAAAASVVINALMRDMFPKEEFSRMMSFVTLVMTIAPLLAPIIGGWLLV-------WFSWH------  145 (377)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HcChH------
Confidence            999999999999998887764 8999999999999999999999999999999999999987       34444      


Q ss_pred             cchhhHHHHHHHHHHHH-HHHHhcccCCCCCCCCCCccchhhhhhhhhhhhhhhccccCCcccccccccchhHHHHHHHH
Q 015847          214 PYFLPCLCISLFAFGVT-IAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKNWPLMSSIIVYC  292 (399)
Q Consensus       214 ~~~~~~~~~~~~~~~~~-~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  292 (399)
                         ..+.+.++..++.. +..+.+||+++++++++.+.+                  +..++.++.+++|+++...+..+
T Consensus       146 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~  204 (377)
T PRK11102        146 ---AIFWVLALAAILAAALVFFFIPETLPKERRQPFHLR------------------TTIRNFASLFRHKRVLGYMLASG  204 (377)
T ss_pred             ---HHHHHHHHHHHHHHHHHHHhCCccCcccccCCCChH------------------HHHHHHHHHHcChHHHHHHHHHH
Confidence               44466665555543 344566765432211110000                  00113345677887776666555


Q ss_pred             HHHhhhhhHHHHHHHhhcCCcccCccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHH
Q 015847          293 VFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIP  366 (399)
Q Consensus       293 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  366 (399)
                      +.......+..+.|.+..+.     +|+++.+.+.+.....++.++++. ..+++.||+++|+.+..+..+..+
T Consensus       205 ~~~~~~~~~~~~~~~~~~~~-----~g~s~~~~g~~~~~~~~~~~~~~~-~~g~l~~r~g~~~~~~~~~~~~~~  272 (377)
T PRK11102        205 FSFAGMFSFLTAGPFVYIEL-----NGVSPQNFGYYFALNIVFLFVMTI-INSRFVRRVGALNMLRFGLWIQFI  272 (377)
T ss_pred             HHHHHHHHHHHcCHHHHHHH-----hCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhCHHHHHHHHHHHHHH
Confidence            54444445555555555444     688999999999999999999984 889999999999988877765443

>PRK09952 shikimate transporter; Provisional

Probab=99.95  E-value=4.1e-26  Score=215.07  Aligned_cols=296  Identities=15%  Similarity=0.132  Sum_probs=199.4

Q ss_pred             hhHHHHHHHHHHHhhccccchhhhHHH-HHHHh--ccCccccchhhh-hhHHHHHHHHHHHhhhhcccccccccCCchhh
Q 015847           40 ITELFSIWIIVLCTALPISSLFPFLYF-MIKDF--QIAKREEDIGSY-AGYVGSSFMFGRALTSVFWGLVADRYGRKPVI  115 (399)
Q Consensus        40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~G~l~dr~Grr~~l  115 (399)
                      ++......+..+++.++........|. +.+++  +.++.+   ... .....++..++..+++++.|+++||+|||+++
T Consensus        21 ~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~g~~~~G~l~Dr~Grr~~l   97 (438)
T PRK09952         21 RRAALGSFAGAVVDWYDFLLYGITAALVFNREFFPQVSPAM---GTLAAFATFGVGFLFRPLGGVVFGHFGDRLGRKRML   97 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcHH---HHHHHHHHHHHHHHHHhhHHHHHHHHHHhhccHHHH
Confidence            345556677888899988888877774 44555  555432   111 11122455677889999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhccchHH--------HHHHHHHHHhhhccchhh-HHHHHhhhccchhhhHHHHHHHHHHHHHHhHH
Q 015847          116 IMGTASVVIFNTLFGLSVNFW--------MAVLTRFLLGSLNGLLGP-IKAYACEIFREEHQALGLSTVSTAWGIGLIIG  186 (399)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~~~~--------~l~~~r~l~G~~~~~~~~-~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~  186 (399)
                      ..+.++++++++++++++++.        .++++|+++|++.|...+ ...++.|++|+++|++..+....+..+|..++
T Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~g~~~G~~l~  177 (438)
T PRK09952         98 MLTVWMMGIATALIGLLPSFSTIGWWAPVLLVTLRAIQGFAVGGEWGGAALLAVESAPKNKKAFYSSGVQVGYGVGLLLS  177 (438)
T ss_pred             HHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHH
Confidence            999999999999999999987        588899999999888777 48999999999999999999999999999998


Q ss_pred             HHhhhhhcCCCCCCCCcccccccccCCcchhhHHHHHHHHHHHHHHHHhcccCCCCCCCCCCccchhhhhhhhhhhhhhh
Q 015847          187 PALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKE  266 (399)
Q Consensus       187 p~i~~~l~~~~~~~~~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~  266 (399)
                      +.+...+......      +  .+..++||.++++.++..++........||++++.+++++.++               
T Consensus       178 ~~~~~~l~~~~~~------~--~~~~~gWr~~f~~~~~~~l~~~~l~~~~~es~~~~~~~~~~~~---------------  234 (438)
T PRK09952        178 TGLVSLISMMTTD------E--QFLSWGWRIPFLFSIVLVLIALWVRNGMEESAEFEQQQHEQAA---------------  234 (438)
T ss_pred             HHHHHHHHHhCCH------H--HhhccChHHHHHHHHHHHHHHHHHHHhCCCChhHHHHHhhccc---------------
Confidence            8877766531110      0  0113456666677766655544444456666532211100000               


Q ss_pred             ccccCCcccccccccchhHHHHH-HHHHHHhhhhhHHHHHHHhhcCCcccCccccchhhHHHHHHHHHHHHHHHHHHHHH
Q 015847          267 EEGREATPKKSLLKNWPLMSSII-VYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYP  345 (399)
Q Consensus       267 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~  345 (399)
                       .++.....+.++++|+.+.... ..++..........+.|.|..+.     +|++...........++...++. ++.+
T Consensus       235 -~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~-----~g~s~~~~~~~~~~~g~~~~i~~-~~~g  307 (438)
T PRK09952        235 -AKKRIPVIEALLRHPGAFLKIIALRLCELLTMYIVTAFALNYSTQN-----LGLPRELFLNIGLLVGGLSCLTI-PCFA  307 (438)
T ss_pred             -ccccCCHHHHHHHchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----cCCCHHHHHHHHHHHHHHHHHHH-HHHH
Confidence             0000001123456666655433 33344445555667788777655     67777665555556666667776 4789


Q ss_pred             HHHHHhcchhHHHHHHHHHHHHH
Q 015847          346 FLERILGPIMVARIAGVLTIPLL  368 (399)
Q Consensus       346 ~l~~~~~~~~~~~~~~~~~~~~~  368 (399)
                      ++.||++||+.+..+.++..++.
T Consensus       308 ~l~Dr~grr~~~~~~~~~~~~~~  330 (438)
T PRK09952        308 WLADRFGRRRVYITGALIGTLSA  330 (438)
T ss_pred             HHHHHhCchHHHHHHHHHHHHHH
Confidence            99999999998887766554443

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=99.95  E-value=4.1e-26  Score=218.35  Aligned_cols=312  Identities=15%  Similarity=0.048  Sum_probs=206.2

Q ss_pred             hhHHHHHHHHHHHhhccccchhhhHHHHHHHh--------ccCccccchhhhhhHHHHHHHHHHHhhhhcccccccccCC
Q 015847           40 ITELFSIWIIVLCTALPISSLFPFLYFMIKDF--------QIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGR  111 (399)
Q Consensus        40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~dr~Gr  111 (399)
                      .+......++.+..+++...+.+..|.+.+++        +.+..+      .+++.+++.++..++++++|+++||+||
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~s~~~ig~~~~~~~~G~l~dr~Gr   84 (479)
T PRK10077         11 FSITLVATLGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSL------LGFCVASALIGCIIGGALGGYCSNRFGR   84 (479)
T ss_pred             HHHHHHHHHHHHhcCcccceehHhHHHHHHHhcccccccccCChhH------HHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            34445666778888889999999999888887        666777      9999999999999999999999999999


Q ss_pred             chhhHHHHHHHHHHHHHHhcc------------chHHHHHHHHHHHhhhccchhh-HHHHHhhhccchhhhHHHHHHHHH
Q 015847          112 KPVIIMGTASVVIFNTLFGLS------------VNFWMAVLTRFLLGSLNGLLGP-IKAYACEIFREEHQALGLSTVSTA  178 (399)
Q Consensus       112 r~~l~~~~~~~~~~~~~~~~~------------~~~~~l~~~r~l~G~~~~~~~~-~~~~~~~~~~~~~r~~~~~~~~~~  178 (399)
                      |++++++.++.+++.+.++++            +.++.+++.|+++|++.|...+ ..++++|++|+++|++++++.+.+
T Consensus        85 r~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~  164 (479)
T PRK10077         85 RDSLKIAAVLFFISALGSAWPEFGFTSIGPDNTGYVPEFVIYRIIGGIGVGLASMLSPMYIAEIAPAHIRGKLVSFNQFA  164 (479)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhccccccccccchhHHHHHHHHHHHHhhhHhHHhhHHHHHHHhhCChhhhhHHHHHHHHH
Confidence            999999999998888877653            2356788999999999888777 499999999999999999999999


Q ss_pred             HHHHHhHHHHhhhhhcCCCCC-CCCcccccccccCCcchhhHHHHHHHHHHHHHHHHhcccCCCCCCCCCCccchh--hh
Q 015847          179 WGIGLIIGPALGGFLAQPAEK-YPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVS--YD  255 (399)
Q Consensus       179 ~~~g~~~~p~i~~~l~~~~~~-~~~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~--~~  255 (399)
                      ..+|..+++.+++.+...... ...         .++||.++.+.++..++..+..+++||++++...+++.++..  .+
T Consensus       165 ~~~G~~~~~~~~~~~~~~~~~~~~~---------~~gWr~~f~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~~~~~~~~  235 (479)
T PRK10077        165 IIFGQLVVYFVNYFIARSGDASWLN---------TDGWRYMFASEAIPALLFLMLLYFVPETPRYLMSRGKQEQAEGILR  235 (479)
T ss_pred             HHHHHHHHHHHHHHHhccCcccccc---------cCChHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHcCCHHHHHHHHH
Confidence            999999999888776531100 001         334555557777777666666777899875422111111100  00


Q ss_pred             hhh---hhhh---hhhhccccCCcccccccccchhHHHHHHHHHHHh----hhhhHHHHHHHhhcCCcccCccccchhhH
Q 015847          256 ALE---SASA---EVKEEEGREATPKKSLLKNWPLMSSIIVYCVFSL----HDMAYSEIFSLWANSPKKLGGLNYSTQMV  325 (399)
Q Consensus       256 ~~~---~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  325 (399)
                      +..   +..+   +..+....+....+..+.- .............+    .......+.|.+..+      .|++....
T Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~------~g~~~~~~  308 (479)
T PRK10077        236 KIMGNTLATQALQEIKHSLDHGRKTGGKLLMF-GVGVIVIGVMLSVFQQFVGINVVLYYAPEIFKT------LGASTDIA  308 (479)
T ss_pred             HHcCChhHHHHHHHHHHHHHHhhhhhhhhcch-hHHHHHHHHHHHHHHHHhChhHHHHHHHHHHHH------cCCCCchH
Confidence            000   0000   0000000000000111110 00111111111111    111122233444333      67777666


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHhHHhHH
Q 015847          326 GEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYI  374 (399)
Q Consensus       326 g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  374 (399)
                      +......++..+++. ++.+++.||++||+.+..+.++.+++.+.+...
T Consensus       309 ~~~~~~~~~~~~i~~-~~~g~l~dr~g~r~~~i~~~~~~~v~~~~l~~~  356 (479)
T PRK10077        309 LLQTIIVGVINLTFT-VLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTA  356 (479)
T ss_pred             HHHHHHHHHHHHHHH-HHHHHHHHHhcChHHHHHhHHHHHHHHHHHHHH
Confidence            777777788888888 488999999999999999988888877766543

>PRK03893 putative sialic acid transporter; Provisional

Probab=99.95  E-value=6.6e-26  Score=217.81  Aligned_cols=305  Identities=15%  Similarity=0.186  Sum_probs=213.7

Q ss_pred             CChhHHHHHHHHHHHhhccccchhhhHHHHHHHhccCccccchhhhhhHHHHHHHHHHHhhhhcccccccccCCchhhHH
Q 015847           38 LPITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIM  117 (399)
Q Consensus        38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~dr~Grr~~l~~  117 (399)
                      .+++.+..+++..++..++.....+.+|.+.+++|.+..+      .+++.+.+.++..+++++.|+++||+|||+.+..
T Consensus        17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~------~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~   90 (496)
T PRK03893         17 AQWKAFSAAWLGYLLDGFDFVLITLVLTEVQGEFGLTTVQ------AASLISAAFISRWFGGLLLGAMGDRYGRRLAMVI   90 (496)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHH
Confidence            3445666788888888899999999999999999999999      9999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhccchHHHHHHHHHHHhhhccchhh-HHHHHhhhccchhhhHHHHHHHHHHHHHHhHHHHhhhhhcCC
Q 015847          118 GTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGP-IKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQP  196 (399)
Q Consensus       118 ~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~-~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~i~~~l~~~  196 (399)
                      +.++.+++.++++++++++.+++.|++.|++.+...+ ..+++.|.+|+++|++++++...+..+|..++|.+++.+.+ 
T Consensus        91 ~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~-  169 (496)
T PRK03893         91 SIVLFSVGTLACGFAPGYWTLFIARLVIGMGMAGEYGSSATYVIESWPKHLRNKASGFLISGFSIGAVVAAQVYSLVVP-  169 (496)
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-
Confidence            9999999999999999999999999999998777666 48999999999999999999999999999999999999987 


Q ss_pred             CCCCCCcccccccccCCcchhhHHHHHHHHHHHHHHHHhcccCCCCCCCCCCccc--hhhhhhhhhhhhhhhc-------
Q 015847          197 AEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCD--VSYDALESASAEVKEE-------  267 (399)
Q Consensus       197 ~~~~~~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~-------  267 (399)
                            ..|||+.|         .+..+..++.++....+||++++.++++++.+  ...+.......+....       
T Consensus       170 ------~~~w~~~f---------~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (496)
T PRK03893        170 ------VWGWRALF---------FIGILPIIFALWLRKNLPEAEDWKEKHAGKAPVRTMVDILYRGEHRIINILLTLAAA  234 (496)
T ss_pred             ------cCCHHHHH---------HHHHHHHHHHHHHHHhCCCchhhhhhccccccchhHHHHHhcchhHHHHHHHHHHHH
Confidence                  45565544         54444333333334455665432211111100  0000000000000000       


Q ss_pred             -------cccCCccc-------------------ccccccchhHHHHHHHHHHHhhhhhHHHHHHHhhcCCcccCccccc
Q 015847          268 -------EGREATPK-------------------KSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYS  321 (399)
Q Consensus       268 -------~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  321 (399)
                             .......+                   ....+.+.........+...........++|.|+++.     +|++
T Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~-----~g~~  309 (496)
T PRK03893        235 AALWFCFAGNLQNAAIVAVLGLLCAAIFISFMVQSSGKRWPTGVMLMVVVLFAFLYSWPIQALLPTYLKTD-----LGYD  309 (496)
T ss_pred             HHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHhccchHHHHHHHHHHhh-----cCCC
Confidence                   00000000                   0000011111111111222222223456788888654     7899


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHhH
Q 015847          322 TQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTS  370 (399)
Q Consensus       322 ~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  370 (399)
                      +.+++.+.+...++.++++. +.+++.||+++|+.+..+..+..+..+.
T Consensus       310 ~~~~g~~~~~~~~~~~~g~~-~~g~l~dr~g~~~~~~~~~~~~~~~~~~  357 (496)
T PRK03893        310 PHTVANVLFFSGFGAAVGCC-VGGFLGDWLGTRKAYVCSLLISQLLIIP  357 (496)
T ss_pred             HHHHHHHHHHHHHHHHHHHH-HHHHHHHHhcchHHHHHHHHHHHHHHHH
Confidence            99999999999999999985 8899999999999887776665554433

>PRK11043 putative transporter; Provisional

Probab=99.95  E-value=1.3e-25  Score=209.84  Aligned_cols=273  Identities=17%  Similarity=0.189  Sum_probs=209.7

Q ss_pred             HHHHHHHHHhhccccchhhhHHHHHHHhccCccccchhhhhhHHHHHHHHHHHhhhhcccccccccCCchhhHHHHHHHH
Q 015847           44 FSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVV  123 (399)
Q Consensus        44 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~  123 (399)
                      ........+..+..+...|.+|.+.+++|.++.+      .++..+++.++..++++++|+++||+|||+++..+.++..
T Consensus         9 ~~~~~~~~~~~~~~~~~~p~~~~i~~~~~~s~~~------~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~   82 (401)
T PRK11043          9 VYLAGLSMLGFLATDMYLPAFKAIQADLQTSASA------VSASLSLFLAGFALGQLLWGPLSDRYGRKPVLLAGLSLFA   82 (401)
T ss_pred             HHHHHHHHHHHHHHHHHHhhHHHHHHHHCCCHHH------HHHHHHHHHHHHHHHHHhhhhHHhhcCCcHHHHHHHHHHH
Confidence            3344445556667778889999999999999999      9999999999999999999999999999999999999999


Q ss_pred             HHHHHHhccchHHHHHHHHHHHhhhccchhhH-HHHHhhhccchhhhHHHHHHHHHHHHHHhHHHHhhhhhcCCCCCCCC
Q 015847          124 IFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPN  202 (399)
Q Consensus       124 ~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~i~~~l~~~~~~~~~  202 (399)
                      ++.+++.++++++.+++.|+++|++.+...+. .+++.|++|+++|++..+.......+|..++|.+++++.+       
T Consensus        83 ~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~-------  155 (401)
T PRK11043         83 LGSLGMLWVESAAQLLVLRFVQAVGVCSAAVIWQALVIDRYPAQKANRVFATIMPLVALSPALAPLLGAWLLN-------  155 (401)
T ss_pred             HHHHHHHHhcCHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------
Confidence            99999999999999999999999987776664 8889999999999999999988999999999999999987       


Q ss_pred             cccccccccCCcchhhHHHHHHHHHHHHHHHHhcccCCCCCCCCCCccchhhhhhhhhhhhhhhccccCCcccccccccc
Q 015847          203 LFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKNW  282 (399)
Q Consensus       203 ~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  282 (399)
                      ..|||..         +.+.++..++..+..+.++|++++++++   +                    .+.+.++.+++|
T Consensus       156 ~~g~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~--------------------~~~~~~~~~~~~  203 (401)
T PRK11043        156 HFGWQAI---------FATLFAITLLLILPTLRLKPSKKARKQS---Q--------------------DALTFKQLLKSK  203 (401)
T ss_pred             cCChHHH---------HHHHHHHHHHHHHHHHHcCCCCCccccc---h--------------------HHHHHHHHHcCh
Confidence            4455444         4666666665555555555543221100   0                    011345667777


Q ss_pred             hhHHHHHHHHHHHhhhhhHHHHHHHhhcCCcccCccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHH
Q 015847          283 PLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGV  362 (399)
Q Consensus       283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  362 (399)
                      +++...+...+.......+..+.|.+.++      +|+++.+.|.......++..+++. ..+++.||+++++.......
T Consensus       204 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~------~g~s~~~~g~~~~~~~~~~~~g~~-~~~~l~~r~~~~~~~~~~~~  276 (401)
T PRK11043        204 TYLGNVLIFAACSAAFFAWLTGSPFILEQ------MGYSPADIGLSYVPQTIAFLVGGY-GCRAALQKWGGEQLLPWLLV  276 (401)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHhHHHHHH------cCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHcCHHHHHHHHHH
Confidence            77765555555555555666677777654      688999999888888888888874 78899999998887655554


Q ss_pred             HHHHHH
Q 015847          363 LTIPLL  368 (399)
Q Consensus       363 ~~~~~~  368 (399)
                      ..+++.
T Consensus       277 ~~~~~~  282 (401)
T PRK11043        277 LFAVSV  282 (401)
T ss_pred             HHHHHH
Confidence            444443

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=99.95  E-value=1.6e-25  Score=208.68  Aligned_cols=304  Identities=13%  Similarity=0.064  Sum_probs=221.9

Q ss_pred             HHHHHHHHHHHhhccccchhhhHHHHHHHhccCccccchhhhhhHHHHHHHHHHHhhhhcccccccccCCchhhHHHHHH
Q 015847           42 ELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTAS  121 (399)
Q Consensus        42 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~  121 (399)
                      .+..++...+..++..+...+.+|.+++++|.+..+      .|++.+.+.+++.+++++.|++.||+|||+++..+.++
T Consensus         4 ~~~~~~~~f~~~G~~~~~~~~l~~~~~~~~~~s~~~------~g~l~s~~~~g~~i~~~~~g~l~~r~G~r~~~~~g~~l   77 (410)
T TIGR00885         4 PFALITSLFALWGFANDITNPMVPQFQQAFTLTAFQ------AALVQSAFYGGYFIMAIPAAIFMKKLSYKAGILLGLFL   77 (410)
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHH
Confidence            345666777778888888899999999999999999      99999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhc---cchHHHHHHHHHHHhhhccchhhH-HHHHhhhccchhhhHHHHHHHHHHHHHHhHHHHhhhhhcCCC
Q 015847          122 VVIFNTLFGL---SVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPA  197 (399)
Q Consensus       122 ~~~~~~~~~~---~~~~~~l~~~r~l~G~~~~~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~i~~~l~~~~  197 (399)
                      .+++.+++..   .++++.+++.|++.|++.|...+. .+++.+..|+++|++.+++.+...++|..++|.+++.+....
T Consensus        78 ~~~g~~l~~~~~~~~~~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~g~~i~~~l~~~~  157 (410)
T TIGR00885        78 YALGAFLFWPAAEIMNYTLFLVGLFILTAGLGFLETAANPYILVMGPESTATRRLNLAQSFNPFGSIIGMVVAQQLILSN  157 (410)
T ss_pred             HHHHHHHHHHHHhhccHHHHHHHHHHHHhhHHHHHhhhhHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            9999887644   468999999999999999988774 889999999999999999999999999999999999886421


Q ss_pred             CCC-CCccccccc---------ccCCcchhhHHHHHHHHHHHHHHHHhcccCCCCCCCCCCccchhhhhhhhhhhhhhhc
Q 015847          198 EKY-PNLFSSESL---------FGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEE  267 (399)
Q Consensus       198 ~~~-~~~~gw~~~---------f~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (399)
                      ... ....-++..         -...+|+.++.+.+++.++..+...+.++++.++ ++++ ++                
T Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~fl~~a~~~~~~~~~~~~~~~p~~~~-~~~~-~~----------------  219 (410)
T TIGR00885       158 LPHQSQDVLDKLSPEELSAIKHSDLASVQTPYMIIGAVVLAVALLIMLTKMPALNH-SDAK-QI----------------  219 (410)
T ss_pred             CccchhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCc-cccc-cc----------------
Confidence            000 000000000         0012466666777776655444433332221111 0000 00                


Q ss_pred             cccCCcccccccccchhHHHHHHHHHHHhhhhhHHHHHHHhhcCCcccCccccchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 015847          268 EGREATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFL  347 (399)
Q Consensus       268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l  347 (399)
                        +.....++.+|+|.++...+..+++...+.+..++++.|..+..    .+.+....+...+.......+++ ++++++
T Consensus       220 --~~~~~~~~~~~~~~~~~~~l~~f~yvg~e~~~~s~l~~y~~~~~----~~~~~~~a~~~~~~~~~~~~vGR-~~~~~l  292 (410)
T TIGR00885       220 --SFSASLSRLARIRHYREGVIAQFFYVGVQIMCWTFIIQYAVRLI----PGMTAGFAANYNIGAMVIFFISR-FIGTWL  292 (410)
T ss_pred             --cchhhHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc----CCCCHHHHHHHHHHHHHHHHHHH-HHHHHH
Confidence              00112346778888888888888888888788888888876421    23444445555555566777888 489999


Q ss_pred             HHHhcchhHHHHHHHHHHHHHhHHhHHHH
Q 015847          348 ERILGPIMVARIAGVLTIPLLTSYPYIAM  376 (399)
Q Consensus       348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  376 (399)
                      .||+++|+.+.+......+..++..+.+.
T Consensus       293 ~~r~~~~~~l~i~~~~~~~~~ll~~~~~~  321 (410)
T TIGR00885       293 ISYLAAHKVLMAYAIIGMALCLGSIFAGG  321 (410)
T ss_pred             HHHcCHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            99999999988888877777776665433

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>TIGR00895 2A0115 benzoate transport

Probab=99.95  E-value=4.7e-26  Score=212.49  Aligned_cols=293  Identities=19%  Similarity=0.268  Sum_probs=206.1

Q ss_pred             hhHHHHHHHHHHHhhccccchhhhHHHHHHHhccCccccchhhhhhHHHHHHHHHHHhhhhcccccccccCCchhhHHHH
Q 015847           40 ITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGT  119 (399)
Q Consensus        40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~  119 (399)
                      ++.+.......+..+.......+..|.+.+++|.+..+      .+++.+...++..++.++.|+++||+|||+.+..+.
T Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~   89 (398)
T TIGR00895        16 WRAIILSFLIMLMDGYDLAAMGFAAPAISAEWGLDPVQ------LGFLFSAGLIGMAFGALFFGPLADRIGRKRVLLWSI   89 (398)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhHHHHhhccCCCHHH------HHHHHHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHH
Confidence            34444555566666777777788899999999999988      999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhccchHHHHHHHHHHHhhhccchhhH-HHHHhhhccchhhhHHHHHHHHHHHHHHhHHHHhhhhhcCCCC
Q 015847          120 ASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAE  198 (399)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~i~~~l~~~~~  198 (399)
                      ++..++.++..++++++.+++.|++.|++.+...+. .+++.|++|+++|++++++...+..+|..++|.+++++.+   
T Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~---  166 (398)
T TIGR00895        90 LLFSVFTLLCALATNVTQLLILRFLAGLGLGGLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWLIP---  166 (398)
T ss_pred             HHHHHHHHHHHHccchHHHHHHHHHHhcccccchhhHHHHHHHHcCHHhhchhHhhHhhHHHHHHHHHHHHHHHHhh---
Confidence            999999999999999999999999999998887774 9999999999999999999999999999999999999987   


Q ss_pred             CCCCcccccccccCCcchhhHHHHHHHH-HHHHHHHHhcccCCCCCCCCCCcc-chhhhhhhhhhh-h---hhhcc-c--
Q 015847          199 KYPNLFSSESLFGKFPYFLPCLCISLFA-FGVTIAAFWLPETLHRHNDDDDSC-DVSYDALESASA-E---VKEEE-G--  269 (399)
Q Consensus       199 ~~~~~~gw~~~f~~~~~~~~~~~~~~~~-~~~~~~~~~~~e~~~~~~~~~~~~-~~~~~~~~~~~~-~---~~~~~-~--  269 (399)
                          ..||+..|         .+.++.. +...+...++||+++...+++++. ++..++.+.... +   ..+++ .  
T Consensus       167 ----~~g~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (398)
T TIGR00895       167 ----VFGWRSLF---------YVGGIAPLLLLLLLMRFLPESIDFLVSKRPETVRRIVNAIAPQMQAEAQSALPEQKATQ  233 (398)
T ss_pred             ----cccceeeh---------hhhhhHHHHHHHHHHHhCCCCChHHHhcCHHHHHHHHHHHHHhcccccccccccccccc
Confidence                55666555         5553333 334444566777654322211110 000000000000 0   00000 0  


Q ss_pred             cCCcc-ccccccc---chhHHHHHHHHHHHhhhhhHHHHHHHhhcCCcccCccccchhhHHHHHHHHHHHHHHHHHHHHH
Q 015847          270 REATP-KKSLLKN---WPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYP  345 (399)
Q Consensus       270 ~~~~~-~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~  345 (399)
                      +..+. .+..+++   +..+......++..........++|.+..+      +|+++.+.+.......++.+++.. +.+
T Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~~~~~~~~~~~~~~~~~~~~~-~~~  306 (398)
T TIGR00895       234 GTKRSVFKALFQGKTARITVLLWLLYFMLLVGVYFLTNWLPKLMVE------LGFSLSLAATGGALFNFGGVIGSI-IFG  306 (398)
T ss_pred             chhhHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------cCCCHHHHHHHHHHHHHHHHHHHH-HHH
Confidence            00111 1112222   223333344444444555555666744433      688999999999999999999984 889


Q ss_pred             HHHHHhcchhHHHHHH
Q 015847          346 FLERILGPIMVARIAG  361 (399)
Q Consensus       346 ~l~~~~~~~~~~~~~~  361 (399)
                      ++.||+++++......
T Consensus       307 ~l~~~~~~~~~~~~~~  322 (398)
T TIGR00895       307 WLADRLGPRVTALLLL  322 (398)
T ss_pred             HHHhhcchHHHHHHHH
Confidence            9999999885444333

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=99.95  E-value=4.5e-26  Score=217.83  Aligned_cols=298  Identities=20%  Similarity=0.153  Sum_probs=204.6

Q ss_pred             HHHHHHHhhccccchhhhHHHHHHHhccC--------ccccchhhhhhHHHHHHHHHHHhhhhcccccccccCCchhhHH
Q 015847           46 IWIIVLCTALPISSLFPFLYFMIKDFQIA--------KREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIM  117 (399)
Q Consensus        46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~dr~Grr~~l~~  117 (399)
                      ..+..++..++.....+..+.+..+++.+        ..+      .+++.+++.++..+++++.|+++||+|||+++.+
T Consensus        33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~  106 (481)
T TIGR00879        33 AAIGGLMFGYDTGVIGGALALPAFEFKFTSANSDSYSSSL------WGLVVSIFLVGGFIGALFAGWLSDRFGRKKSLLI  106 (481)
T ss_pred             HHHHHHhcccccchhhhhhhcHHHHHhcCCcccCCCChhH------HHHHHHHHHHHHHHHHHHhhHhhhhhhhHHHHHH
Confidence            33445566677778888888888888777        566      9999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcc---chHHHHHHHHHHHhhhccchhhH-HHHHhhhccchhhhHHHHHHHHHHHHHHhHHHHhh---
Q 015847          118 GTASVVIFNTLFGLS---VNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALG---  190 (399)
Q Consensus       118 ~~~~~~~~~~~~~~~---~~~~~l~~~r~l~G~~~~~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~i~---  190 (399)
                      +.++..++.+++.+.   .+++.+++.|++.|++.+...+. .+++.|++|+++|++++++.+.+..+|..++|.++   
T Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~  186 (481)
T TIGR00879       107 IALLFVIGAILMGLAAFALSVEMLIVGRVLLGIGVGIASALVPMYLSEIAPKALRGALTSLYQLAITFGILVAYGFGSGK  186 (481)
T ss_pred             HHHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHhHHHHHHHccCChhhhhhhhhHHHHHHHHHHHHHHHHHHHh
Confidence            999999998888543   45668999999999998887775 99999999999999999999999999999999998   


Q ss_pred             hhhcCCCCCCCCcccccccccCCcchhhHHHHHHHHHHHHHHHHhcccCCCCCCCCCCccch--hhhhh--------hhh
Q 015847          191 GFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDV--SYDAL--------ESA  260 (399)
Q Consensus       191 ~~l~~~~~~~~~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~--~~~~~--------~~~  260 (399)
                      +...+       ..+||         ..+.+.++..++.++..+++||+++....+++..+.  ...+.        +..
T Consensus       187 ~~~~~-------~~~w~---------~~f~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (481)
T TIGR00879       187 VSLNN-------TLGWR---------IPLGLQLIPAGLLFLGLFFLPESPRWLVGKGRVEEARKSLARLRGTSGEDKELL  250 (481)
T ss_pred             hcCCC-------CccHH---------HHHHHHHHHHHHHHHHHhcCCCChHHHHHcCChHHHHHHHHHHhCCCCCcHHHH
Confidence            55544       34444         444666666666666667788876421111110000  00000        000


Q ss_pred             h------hhhhhccccCCcccccccc------cchhHHHHHHHHHHHhhhhhHHHHHHHhhcCCcccCccccchhhHHHH
Q 015847          261 S------AEVKEEEGREATPKKSLLK------NWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEV  328 (399)
Q Consensus       261 ~------~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~  328 (399)
                      .      .....+.+.....+.+.++      .+.++...+..+...........+.|.+..+      .|++..+.+..
T Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~~~~~~~~  324 (481)
T TIGR00879       251 DELELIDIKRSIEKRSVQPSWGSLFSSTRRIRRRLFLGVVLQWFQQFTGINAIMYYSPTIFEN------AGVSTDHAFLV  324 (481)
T ss_pred             HHHHHHHHHHHHHHhhccccHHHHHhcCchhHHHHHHHHHHHHHHHHhCCeehHHHHHHHHHH------cCCCchHHHHH
Confidence            0      0000000000011112222      2222333333333333333444555655544      68888888888


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHhHHh
Q 015847          329 LAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYP  372 (399)
Q Consensus       329 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  372 (399)
                      .....++.+++.. +.+++.||+++|+.+..+.++.+++++.+.
T Consensus       325 ~~~~~~~~~~~~~-~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~  367 (481)
T TIGR00879       325 SIIVGAVNFAFTF-VAIFLVDRFGRRPLLLIGAAGMAICLFVLG  367 (481)
T ss_pred             HHHHHHHHHHHHH-HHHHHHHHhcchHHHHHHHHHHHHHHHHHH
Confidence            8888888888885 889999999999998888777777766655

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>TIGR00805 oat sodium-independent organic anion transporter

Probab=99.95  E-value=5e-27  Score=228.54  Aligned_cols=311  Identities=16%  Similarity=0.136  Sum_probs=231.1

Q ss_pred             HHHHHHHHhhccccchhhhHHHHHHHhccCccccchhhhhhHHHHHHHHHHHhhhhcccccccccCCchhhHHHHHHHHH
Q 015847           45 SIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVI  124 (399)
Q Consensus        45 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~  124 (399)
                      ...+..+......+...+.++.++++|+++..+      .|++.+.+.+++.++.++.|+++||+|||+.+.++.+++++
T Consensus        37 ~~~~~~~~~~~~~g~~~~~l~~iek~F~lss~~------~G~i~s~~~i~~~~~~i~v~~~~~r~~r~~~i~~g~ll~~l  110 (633)
T TIGR00805        37 LLTCAQLQGLLYNGLVNSSLTTIERRFKLSTSS------SGLINGSYEIGNLLLIIFVSYFGTKLHRPIVIGIGCAIMGL  110 (633)
T ss_pred             HHHHHHHHHHHHHHHHHhhchhhhhhhCCCCCc------ceeeeehhhHHHHHHHHHHHHhhcccCcceEEEecHHHHHH
Confidence            344456666666778888899999999999999      99999999999999999999999999999999999999999


Q ss_pred             HHHHHhccc---------------------------------------------------hHHHHHHHHHHHhhhccchh
Q 015847          125 FNTLFGLSV---------------------------------------------------NFWMAVLTRFLLGSLNGLLG  153 (399)
Q Consensus       125 ~~~~~~~~~---------------------------------------------------~~~~l~~~r~l~G~~~~~~~  153 (399)
                      +++++++.+                                                   .+..++++|+++|+|.+...
T Consensus       111 g~ll~alphf~~~~y~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~  190 (633)
T TIGR00805       111 GSFLLSLPHFLSGRYSYSTTVSSTGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIF  190 (633)
T ss_pred             HHHHHhChHHhcCCccccccccccccccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcch
Confidence            999887753                                                   24567899999999998888


Q ss_pred             hH-HHHHhhhccchhhhHHHHHHHHHHHHHHhHHHHhhhhhcCCCCCCCC---------cccccccccCCcchhhHHHHH
Q 015847          154 PI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPN---------LFSSESLFGKFPYFLPCLCIS  223 (399)
Q Consensus       154 ~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~i~~~l~~~~~~~~~---------~~gw~~~f~~~~~~~~~~~~~  223 (399)
                      +. .+++.|++|+++|++++++++.+..+|.++|+++++++.+...+|+.         -.+|||   ..+||..|++.+
T Consensus       191 ~~~~~~i~d~~~~~~~~~~~~i~~~~~~iG~~lG~llgg~l~~~~~d~~~~~~~~~~l~~~dprW---iGaWwl~Fli~g  267 (633)
T TIGR00805       191 PLGISYIDDFAKSKNSPLYIGILESIAVFGPAFGYLLGSFCLQIYVDTGSVNTEDVILTPTDPRW---IGAWWIGFLICG  267 (633)
T ss_pred             hcCchhhhccCCccccHHHHHHHHHHHHhhhHHHHHHHHHHHhcccccccCCCCCCCCCCCCccH---HHHHHHHHHHHH
Confidence            85 99999999999999999999999999999999999999863222210         011222   123788888888


Q ss_pred             HHHHHHHHHHHhcccCCCCCCCCCCccchhhhhhhhhhhhh-h---hccccCCcccccccccchhHHHHHHHHHHHhhhh
Q 015847          224 LFAFGVTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEV-K---EEEGREATPKKSLLKNWPLMSSIIVYCVFSLHDM  299 (399)
Q Consensus       224 ~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~-~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  299 (399)
                      ++.++..+.++++|++.++...+.+.+....+..++..++. .   +...+.+...+++++||.++...+..++......
T Consensus       268 ~l~~l~~v~l~~~p~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~n~~f~~~~l~~~~~~~~~~  347 (633)
T TIGR00805       268 GVALLTSIPFFFFPKALPKEGKRVNVDVHETEKLEKSEDKSRKKNSDITKDFPKIIKRLLCNPIYMLVILAQVIDSLAFN  347 (633)
T ss_pred             HHHHHHHHHHHhCccccCCcccccchhhhhhhcccccccccchhhhhhHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHH
Confidence            88777666667777654432111100000000000000000 0   0001122345678999999999999999999999


Q ss_pred             hHHHHHHHhhcCCcccCccccchhhHHHHHHHHHHH-HHHHHHHHHHHHHHHhc--chhHHHHHHHHHHHHHhH
Q 015847          300 AYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFS-LLVFQLSLYPFLERILG--PIMVARIAGVLTIPLLTS  370 (399)
Q Consensus       300 ~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~-~~~~~~~~~~~l~~~~~--~~~~~~~~~~~~~~~~~~  370 (399)
                      ++..++|.|+++.     +|+++.+++.+.+...+. .+++. ++++++.||++  .++.+..+.++..++++.
T Consensus       348 ~~~~~lP~yl~~~-----~g~s~~~ag~l~~~~~i~~~~vG~-~l~G~l~~r~~~~~~~~~~~~~~~~~~~~~~  415 (633)
T TIGR00805       348 GYITFLPKYLENQ-----YGISSAEANFLIGVVNLPAAGLGY-LIGGFIMKKFKLNVKKAAYFAICLSTLSYLL  415 (633)
T ss_pred             HHHHHHHHHHHHH-----cCCcHHHHHHHhhhhhhhHHHHHH-hhhhheeeeecccHHHHHHHHHHHHHHHHHH
Confidence            9999999999877     899999999998887764 45555 68999999987  456666666666555443

Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=99.95  E-value=2e-25  Score=208.52  Aligned_cols=277  Identities=20%  Similarity=0.143  Sum_probs=196.8

Q ss_pred             hhHHHHHHHHHHHhhccccchhhhHHH-HHHHhccCccccchhhhhhHHHHHHHHHHHhhhhcccccccccCCchhhHHH
Q 015847           40 ITELFSIWIIVLCTALPISSLFPFLYF-MIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMG  118 (399)
Q Consensus        40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~dr~Grr~~l~~~  118 (399)
                      ++.+..+.+..++..++..+..+.+|. +.+++|.|+.+      .|++.+++.++..+++++.|+++||+||||+++.+
T Consensus        14 ~~~~~~l~~~~~~~~~~~~~~~~~l~~~i~~~~g~s~~~------~g~~~~~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~   87 (399)
T PRK05122         14 TLRIVSIVMFTFISYLTIGLPLAVLPGYVHDQLGFSAFL------AGLVISLQYLATLLSRPHAGRYADTLGPKKAVVFG   87 (399)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHH------HHHHHHHHHHHHHHhchhhHhHHhccCCcchHHHH
Confidence            456777888888888888999999996 56889999999      99999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhcc--------chHHHHHHHHHHHhhhccchhhH-HHHHhhhccchhhhHHHHHHHHHHHHHHhHHHHh
Q 015847          119 TASVVIFNTLFGLS--------VNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPAL  189 (399)
Q Consensus       119 ~~~~~~~~~~~~~~--------~~~~~l~~~r~l~G~~~~~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~i  189 (399)
                      .++.+++.+.+.++        .+++.+++.|+++|++.+...+. .+++.|++|+++|++++++......+|..+||.+
T Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l  167 (399)
T PRK05122         88 LCGCALSGLLYLLAGLLAAWPVLSLLLLLLGRLLLGIGESLAGTGSILWGIGRVGALHTGRVISWNGIATYGALAIGAPL  167 (399)
T ss_pred             HHHHHHHHHHHHHhhhhhccchhHHHHHHHHHHHHHhhHHhhcchHHHHHHhhcChhhhccchhhhhhhhhHHHHHHHHH
Confidence            98887776655442        25678899999999998887775 8889999999999999999999999999999999


Q ss_pred             hhhhcCCCCCCCCcccccccccCCcchhhHHHHHHHHHHHHHHHHhcccCCCCCCCCCCccchhhhhhhhhhhhhhhccc
Q 015847          190 GGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEG  269 (399)
Q Consensus       190 ~~~l~~~~~~~~~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  269 (399)
                      ++.+.+       ..||         +..+.+..+..++..+.....|++++   ++++ +.                  
T Consensus       168 ~~~l~~-------~~g~---------~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-~~------------------  209 (399)
T PRK05122        168 GVLLYH-------WGGL---------AGLGLLIMLLALLGLLLARPRPAVPP---VKGE-RL------------------  209 (399)
T ss_pred             HHHHHH-------cccH---------HHHHHHHHHHHHHHHHHHhcCCCCCC---CCcc-ch------------------
Confidence            999987       3444         43335544444333322222222111   1000 00                  


Q ss_pred             cCCcccccccccchhHHHHHHHHHHHhhhhhHHHHHHHhhcCCcccCccccchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015847          270 REATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLER  349 (399)
Q Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~  349 (399)
                          +.++.++  +.+.......+..........+++.|..+      .|+  .+.+......+++.++++. ..+++.|
T Consensus       210 ----~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~--~~~~~~~~~~~~~~~~~~~-~~g~l~~  274 (399)
T PRK05122        210 ----PFRRVLG--RVWPYGMGLALASIGFGTIATFITLYYAA------RGW--DGAALALTLFGVAFVGARL-LFGNLIN  274 (399)
T ss_pred             ----hHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH------ccc--ccchHHHHHHHHHHHHHHH-HHHHHHH
Confidence                0111111  11222222223333344455566776644      343  2345666777888888874 7899999


Q ss_pred             HhcchhHHHHHHHHHHHHHhHHhHHH
Q 015847          350 ILGPIMVARIAGVLTIPLLTSYPYIA  375 (399)
Q Consensus       350 ~~~~~~~~~~~~~~~~~~~~~~~~~~  375 (399)
                      |+++++.+..+..+.+++...+...+
T Consensus       275 r~~~~~~~~~~~~~~~~~~~~~~~~~  300 (399)
T PRK05122        275 RLGGLRVAIVSLLVEILGLLLLWLAP  300 (399)
T ss_pred             HhccHHHHHHHHHHHHHHHHHHHHhc
Confidence            99999988888777777766655443

>TIGR00897 2A0118 polyol permease family

Probab=99.95  E-value=4e-25  Score=206.37  Aligned_cols=273  Identities=14%  Similarity=0.178  Sum_probs=202.9

Q ss_pred             hHHHHHHHHHHHhhccccchhhhHHHHHHHhccCccccchhhhhhHHHHHHHHHHHhhhhcccccccccCCchhhHHHHH
Q 015847           41 TELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTA  120 (399)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~  120 (399)
                      +.+....++.++.........+.++.+.+++|.++.+      .++..+.+.++..+++++.|+++||+||||++..+.+
T Consensus        13 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~s~~~------~g~~~~~~~~~~~i~~~~~g~l~dr~g~k~~l~~~~~   86 (402)
T TIGR00897        13 LNLLWGYIGVVVFMTGDGLEQGWLSPFLKALGLSPQQ------SASAFTLYGIAAAISAWISGVVAEIIGPLKTMMIGLL   86 (402)
T ss_pred             chhhHHHHHHHHHHHhhhhHHHhHHHHHHHhCCCHHH------hHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence            4555666777777777777777888888999999999      9999999999999999999999999999999999999


Q ss_pred             HHHHHHHHH---hc-cchHHHHHHHHHHHhhhccchhh-HHHHHhhhccchhhhHHHHHHHHHHHHHH-hHHHHhhhhhc
Q 015847          121 SVVIFNTLF---GL-SVNFWMAVLTRFLLGSLNGLLGP-IKAYACEIFREEHQALGLSTVSTAWGIGL-IIGPALGGFLA  194 (399)
Q Consensus       121 ~~~~~~~~~---~~-~~~~~~l~~~r~l~G~~~~~~~~-~~~~~~~~~~~~~r~~~~~~~~~~~~~g~-~~~p~i~~~l~  194 (399)
                      +.+++.+++   +. .++++.+++.|++.|++.+...+ ..+.+.|.+|+++|++++|+.+.+.++|. .++|.+++.+.
T Consensus        87 ~~~~~~~~~~~~~~~~~~~~~l~~~~~i~G~g~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~g~~~~~~l~  166 (402)
T TIGR00897        87 LWCVGHAAFIVFGLGHANYPLILLFYGIRGLGYPLFAYSFLVWVVYNTKQDNLSSAVGWFWAVYSIGIGVFGSYYSSYAI  166 (402)
T ss_pred             HHHHHHHHHHHHhccCccHHHHHHHHHHHHcchHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            988887654   23 35788889999999998777665 47888899999999999999999999997 68999999988


Q ss_pred             CCCCCCCCcccccccccCCcchhhHHHHHHHHHHHHHHHHhcccCCCCCCCCCCccchhhhhhhhhhhhhhhccccCCcc
Q 015847          195 QPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATP  274 (399)
Q Consensus       195 ~~~~~~~~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  274 (399)
                      +       .+||+..+    |+..+..    .+..++..+..++.+++++++ + +++.               ++..+.
T Consensus       167 ~-------~~g~~~~~----~~~~~~~----~~~~~~~~~~~~~~~~~~~~~-~-~~~~---------------~~~~~~  214 (402)
T TIGR00897       167 P-------AFGEMNTL----WSALAFV----LTGGVIALFSNKDIFTPQHMQ-T-REKF---------------SELGKA  214 (402)
T ss_pred             c-------ccchHHHH----HHHHHHH----HHHHHHHHhccCCCCCccccc-C-Ccch---------------hhHHHH
Confidence            7       45554332    2222111    111222233334432111110 0 0000               000113


Q ss_pred             cccccccchhHHHHHHHHHHHhhhhhHHHHHHHhhcCCcccCccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcch
Q 015847          275 KKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPI  354 (399)
Q Consensus       275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~  354 (399)
                      .+.++++|+++...+..++.........++.|.|..+      +|+++.+.+.+.+...++..++.. ..+++.||++||
T Consensus       215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~------~g~s~~~~~~~~~~~~~~~~ig~~-~~g~l~dr~~~~  287 (402)
T TIGR00897       215 ATILFTNPNVLLGGMVRIINTIGLFGFAVFLPMFVAE------LGFSTSEWLQIWGTFFFTNIVFNV-IFGIVGDKLGWM  287 (402)
T ss_pred             HHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH------cCCChhHHHHHHHHHHHHHHHHHH-HHHHHHHhhcch
Confidence            4467889999887777777777777788889988754      688999999988888999999985 889999999988


Q ss_pred             hHHH
Q 015847          355 MVAR  358 (399)
Q Consensus       355 ~~~~  358 (399)
                      +...
T Consensus       288 ~~~~  291 (402)
T TIGR00897       288 NTVR  291 (402)
T ss_pred             hHHH
Confidence            7653

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>TIGR00899 2A0120 sugar efflux transporter

Probab=99.95  E-value=3.1e-25  Score=205.51  Aligned_cols=274  Identities=16%  Similarity=0.162  Sum_probs=199.4

Q ss_pred             HHHHHhhccccchhhhHHH-HHHHhccCccccchhhhhhHHHHHHHHHHHhhhhcccccccccCCchhhHH-HHHHHHHH
Q 015847           48 IIVLCTALPISSLFPFLYF-MIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIM-GTASVVIF  125 (399)
Q Consensus        48 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~dr~Grr~~l~~-~~~~~~~~  125 (399)
                      +..++..+......|.+|. +.+++|.+..+      .|++.+++.+...+.+++.|+++||+||||.++. +.....++
T Consensus         4 ~~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~------~g~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~   77 (375)
T TIGR00899         4 LVAFLTGIAGALQFPTLSLFLSEEVRARPAM------IGLFYTGSAIVGIAVSQLLATRSDYQGDRKGLILFCCLLAALA   77 (375)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHcccCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHH
Confidence            3466677777888899985 56789999999      9999999999999999999999999999887654 55666677


Q ss_pred             HHHHhccchHHHHHHHHHHHhhhccchhhH-HHHHhhhccchhhhHH--HHHHHHHHHHHHhHHHHhhhhhcCCCCCCCC
Q 015847          126 NTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALG--LSTVSTAWGIGLIIGPALGGFLAQPAEKYPN  202 (399)
Q Consensus       126 ~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~-~~~~~~~~~~~~r~~~--~~~~~~~~~~g~~~~p~i~~~l~~~~~~~~~  202 (399)
                      .++++++++++.+++.|++.|.+.+...|. .++..|+.|+++|++.  .+......++|..++|.+++.+.+       
T Consensus        78 ~~~~~~~~~~~~l~~~~~~~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~-------  150 (375)
T TIGR00899        78 CLLFAWNRNYFLLLVLGVLLSSFASTANPQLFALAREHADRTGREAVMFSSVMRAQISLAWVIGPPLAFWLAL-------  150 (375)
T ss_pred             HHHHHhcchHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhcchhhHHHHHHHHHHHhHHHHHhhhHHHHHHH-------
Confidence            788888999999999999988876666675 7888898887777654  577788889999999999999987       


Q ss_pred             cccccccccCCcchhhHHHHHHHHHHHHHH-HHhcccCCCCCCCCCCccchhhhhhhhhhhhhhhccccCCccccccccc
Q 015847          203 LFSSESLFGKFPYFLPCLCISLFAFGVTIA-AFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKN  281 (399)
Q Consensus       203 ~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~-~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  281 (399)
                      .+||         +..+.+.++..++..+. .+.+||.+++.+++++                       ..+.++.+++
T Consensus       151 ~~~~---------~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------~~~~~~~~~~  198 (375)
T TIGR00899       151 GFGF---------TVMFLTAALAFVLCGVLVWLFLPSYPRGAPGALT-----------------------RLEVRGLLAS  198 (375)
T ss_pred             hccc---------HHHHHHHHHHHHHHHHHHHHhCCCcccCcccccC-----------------------cchhhhhhcC
Confidence            3444         44447776665554443 4557876543211100                       0012234566


Q ss_pred             chhHHHHHHHHHHHhhhhhHHHHHHHhhcCCcccCccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHH
Q 015847          282 WPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAG  361 (399)
Q Consensus       282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  361 (399)
                      ++++......++.......+...+|.|+.+.     +|.++.+.+.+.........++. ++.+++.||+++|+.+..+.
T Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~g~~~~~~g~~~~~~~~~~~~~~-~~~g~l~~r~g~~~~~~~~~  272 (375)
T TIGR00899       199 RDTRLLFVACTLMWGCNILYIINMPLLIIHE-----LGLPDKLAGLMMGTAAGLEIPFM-LLAGYLIKRFGKRRLMLLAA  272 (375)
T ss_pred             cchHHHHHHHHHHHHHHHHHHhhhHHHHHHH-----cCCCHHHHHHHHHHHHHHHHHHH-HhHHHHHHHhcchhHHHHHH
Confidence            6666555554444444444555677776554     78889999988877777777776 48899999999999887776


Q ss_pred             HHHHHHHhHHh
Q 015847          362 VLTIPLLTSYP  372 (399)
Q Consensus       362 ~~~~~~~~~~~  372 (399)
                      +...+....+.
T Consensus       273 ~~~~~~~~~~~  283 (375)
T TIGR00899       273 LAGVAFYTGLA  283 (375)
T ss_pred             HHHHHHHHHHH
Confidence            66555544443

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]

Probab=99.95  E-value=3.8e-27  Score=209.43  Aligned_cols=280  Identities=18%  Similarity=0.154  Sum_probs=214.5

Q ss_pred             CCCChhHHHHHHHHHHHhhccccchhhhHHHHHHHhccCccccchhhhhhHHHHHHHHHHHhhhhcccccccccCCchhh
Q 015847           36 SGLPITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVI  115 (399)
Q Consensus        36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~dr~Grr~~l  115 (399)
                      ...+++.+..+++..+++..+.+.+....+.+++.+|++++.      .|++++.+.+.+.+.+|+.|+++||+.||+++
T Consensus        28 ~~~~~~~l~il~~vnlmny~Dr~~iagv~~~v~~~fni~~s~------~Gll~~vf~v~~~i~sPl~gyLadryNR~~v~  101 (493)
T KOG1330|consen   28 MKSPTLTLVILCLVNLMNYADRYTIAGVLKEVQTYFNISDSE------LGLLQTVFIVVFMIASPLFGYLADRYNRKRVI  101 (493)
T ss_pred             cccchHHHHHHHHHHHHHHhhhhhhhhhhHHHHHhcCCCchh------ccchhHHHHHHHHHHHHHHHHHHhhcCcceEE
Confidence            345567777889999999999999999999999999999999      99999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhccchHHHHHHHHHHHhhhccchhhH-HHHHhhhccchhhhHHHHHHHHHHHHHHhHHHHhhhhhc
Q 015847          116 IMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLA  194 (399)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~i~~~l~  194 (399)
                      .+|.+++.++.++++++..+|++.++|.+.|+|.+.+.|. +++++|.+|.++|++++++++.+..+|..+|.+++..+.
T Consensus       102 ~vG~~iW~~Av~~~~fs~~Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~Rs~~~~ify~~ipvGsglG~vvgs~va  181 (493)
T KOG1330|consen  102 AVGIFIWTLAVFASGFSNHFWQVLLCRGFVGIGEASYSPIAPSLIADSFPDDKRSRVLGIFYFAIPVGSGLGYVVGSVVA  181 (493)
T ss_pred             eeHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhcccchhHhhhcCcchhhhHHHHHhhhhcccccceeEEeeeeec
Confidence            9999999999999999999999999999999999999885 999999999999999999999999999999999999998


Q ss_pred             CCCCCCCCccc-ccccccCCcchhhHHHHHHHHHHHHH-HHHhcccCCCCCCCCCCccchhhhhhhhhhhhhhhccccCC
Q 015847          195 QPAEKYPNLFS-SESLFGKFPYFLPCLCISLFAFGVTI-AAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREA  272 (399)
Q Consensus       195 ~~~~~~~~~~g-w~~~f~~~~~~~~~~~~~~~~~~~~~-~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  272 (399)
                      +       ..+ ||+.|         ...+++.++..+ ..++.+|+++...++.+.....           ........
T Consensus       182 ~-------~~~~Wr~af---------~~~avl~vi~~~L~~~f~~eP~rga~~~~~~~~~~-----------~~~~ts~~  234 (493)
T KOG1330|consen  182 S-------LTFWWRWAF---------RGSAVLGVIVGLLVFLFVREPERGARDEVDGENKM-----------VKPFTSVW  234 (493)
T ss_pred             c-------CccceEEEE---------EeehHHHHHHHHHHHhhccCcccccccccccCCcC-----------CCCccchH
Confidence            7       333 66666         556666666444 4555666654322221111100           00111222


Q ss_pred             cccccccccchhHHHHHHHHHHHhhhhhHHHHHHHhhcCCcccCccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 015847          273 TPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERIL  351 (399)
Q Consensus       273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~  351 (399)
                      ++.+.+.+++.+....+.+....+....+.-+.|.+....+..  .|.+.++.-++..+...++.++.+ +++.++||+
T Consensus       235 kDl~~l~~~~v~v~~sl~~~a~~fv~Gs~sww~p~~~~~~~~~--~~~~~~~~~ifg~vt~~~G~lGvl-~Ggiisd~~  310 (493)
T KOG1330|consen  235 KDLKVLAKIKVFVLSSLGIIAAQFVIGSLSWWAPAFIYYSYEL--IGFDHNATLIFGGVTCAGGSLGVL-FGGIISDKL  310 (493)
T ss_pred             HHHHHHHccCceeeehHHHHHHHHhccccchhhhhHHHHHHHH--hCCccccchhhhhHHHhhchhhhe-ehHHHHHHH
Confidence            3444555666666666666666666666666666655443333  344555555666666777777764 788888874

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=99.95  E-value=4.3e-25  Score=208.92  Aligned_cols=282  Identities=14%  Similarity=0.102  Sum_probs=198.1

Q ss_pred             ChhHHHHHHHHHHHhhccccchhhhHHHHHHHhccCccccchhhhhhHHHHHHHHHHHhhhhcccccccccCCchhhHHH
Q 015847           39 PITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMG  118 (399)
Q Consensus        39 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~dr~Grr~~l~~~  118 (399)
                      +|..+....+................|.+.+++|.+.++      .+++.+.+.++..++.++.|+++||+|||++++.+
T Consensus        17 ~w~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~s~~~------~~~~~s~~~~~~~~~~~~~G~l~dr~g~r~~l~~~   90 (455)
T TIGR00892        17 GWVVLGATFVSIGFSYAFPKAVTVFFKELQQIFQATYSE------TAWISSIMLAVLYAGGPISSILVNRFGCRPVVIAG   90 (455)
T ss_pred             chHHHHHHHHHHHHHHhhhcchhhhHHHHHHHhCcchhH------HHHHHHHHHHHHHHhhHHHHHHHHHcCchHHHHhh
Confidence            344444444444444444455677889999999999999      99999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhccchHHHHHH-HHHHHhhhccch-hhHHHHHhhhccchhhhHHHHHHHHHHHHHHhHHHHhhhhhcCC
Q 015847          119 TASVVIFNTLFGLSVNFWMAVL-TRFLLGSLNGLL-GPIKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQP  196 (399)
Q Consensus       119 ~~~~~~~~~~~~~~~~~~~l~~-~r~l~G~~~~~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~i~~~l~~~  196 (399)
                      .++..+++++++++++++.+++ .|++.|++.+.. .+..+++.++++ ++|+++.++.+.+..+|..++|.+++.+.+ 
T Consensus        91 ~~~~~~~~~~~~~~~~~~~l~~~~~~l~G~~~~~~~~~~~~~~~~~~~-~~r~~a~g~~~~~~~~g~~~~~~l~~~l~~-  168 (455)
T TIGR00892        91 GLLASLGMILASFSSNVIELYLTAGFITGLGLAFNFQPSLTMLGKYFY-RRRPLANGLAMAGSPVFLSTLAPLNQYLFE-  168 (455)
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHH-hhHHHHHHHHHhcccHHHHHHHHHHHHHHH-
Confidence            9999999999999999998865 468999988765 445788889885 789999999999999999999999999987 


Q ss_pred             CCCCCCcccccccccCCcchhhHHHHHHHHHHHHHHHHhc-ccCCCCCCCCCCccchh-hhhhhhhhhhhhhccccCCcc
Q 015847          197 AEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWL-PETLHRHNDDDDSCDVS-YDALESASAEVKEEEGREATP  274 (399)
Q Consensus       197 ~~~~~~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~-~e~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~  274 (399)
                            .+|||+.|         ++.+++.++..+..+++ ++.+.+...+.++.+.. .+...+..+.....++..+..
T Consensus       169 ------~~gwr~~f---------~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (455)
T TIGR00892       169 ------SFGWRGSF---------LILGGLLLHCCVCGALMRPVGPSQRVSKSKSKEGLPPDGSTKKLSKKSTAEKINRFL  233 (455)
T ss_pred             ------HhChHHHH---------HHHHHHHHHHHHHHHHhCCCCcccccccccccccCCCCCccccccccchhhhhhhhc
Confidence                  45555554         66666655544433333 32211110000000000 000000000000000001111


Q ss_pred             cccccccchhHHHHHHHHHHHhhhhhHHHHHHHhhcCCcccCccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015847          275 KKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERI  350 (399)
Q Consensus       275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~  350 (399)
                      ..+.+++|+++......++..........+++.|..+      .|+++.+++.+.+..+++.++++. ..+++.||
T Consensus       234 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~------~g~s~~~~g~~~~~~~~~~~~~~~-~~g~l~d~  302 (455)
T TIGR00892       234 DFSLFTHRGFLVYLSGNVIMFLGFFAPIIFLVPYAKD------KGVDEYEAAFLLSIIGFVDIFARP-SCGLIAGL  302 (455)
T ss_pred             chHHhcCchHHHHHHHHHHHHHHccchHHHHHHHHHH------cCCCHHHHHHHHHHHHHHHHHHHH-HHHHHhcc
Confidence            1257788998888777777777766777788888754      688999999999999999999884 78888886

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=99.95  E-value=1.1e-25  Score=213.12  Aligned_cols=274  Identities=11%  Similarity=0.024  Sum_probs=194.7

Q ss_pred             HHHHHhhccccchhhhHHHHHHHhccCccccchhhhhhHHHHHHHHHHHhhhhcccccccccCCchhhHHHHHHHHHHHH
Q 015847           48 IIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNT  127 (399)
Q Consensus        48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~  127 (399)
                      +................|++.++ |.+..+      .++..+++.++..+++++.|+++||+|||++++++.++.+++.+
T Consensus        36 ~~~~~~~~~~~~~~~~~p~l~~~-g~s~~~------~g~~~~~~~i~~~~~~~~~G~l~Dr~g~k~~l~~~~~~~~i~~~  108 (452)
T PRK11273         36 FGYAAYYLVRKNFALAMPYLVEQ-GFSRGD------LGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVML  108 (452)
T ss_pred             HHHHHHHHHHHHHHHhhHHHHHc-CCCHHH------HHHHHHHHHHHHHHHHhhhhhhhhccCCchhHHHHHHHHHHHHH
Confidence            34444444444566777888887 999999      99999999999999999999999999999999999999999988


Q ss_pred             HHhcc----chHHHHHHHHHHHhhhccchhh-HHHHHhhhccchhhhHHHHHHHHHHHHHHh-HHHHhhhhhcCCCCCCC
Q 015847          128 LFGLS----VNFWMAVLTRFLLGSLNGLLGP-IKAYACEIFREEHQALGLSTVSTAWGIGLI-IGPALGGFLAQPAEKYP  201 (399)
Q Consensus       128 ~~~~~----~~~~~l~~~r~l~G~~~~~~~~-~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~-~~p~i~~~l~~~~~~~~  201 (399)
                      ++++.    .+++.+++.|++.|++.+...+ ....+.|++|+++|++++++.+.+.++|.. .+|+++..+..      
T Consensus       109 ~~~~~~~~~~~~~~~~~~~~l~gi~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~------  182 (452)
T PRK11273        109 FMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGLPPLLFLLGMAW------  182 (452)
T ss_pred             HHHhhhcccccHHHHHHHHHHHHHHHhccchHHHHHHHHhCChHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH------
Confidence            88775    3788889999999998887766 477889999999999999999999999875 45555434432      


Q ss_pred             CcccccccccCCcchhhHHHHHHHHHH-HHHHHHhcccCCCCCCCCCCccchhhhhhhhhhhhhhhccccCCcc-ccccc
Q 015847          202 NLFSSESLFGKFPYFLPCLCISLFAFG-VTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATP-KKSLL  279 (399)
Q Consensus       202 ~~~gw~~~f~~~~~~~~~~~~~~~~~~-~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~  279 (399)
                       ..|||+.         +++.+++.++ .++..+++||+++....+++++.+  ++.++..++.++++.+.... ....+
T Consensus       183 -~~gw~~~---------f~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (452)
T PRK11273        183 -FNDWHAA---------LYMPAFAAILVALFAFAMMRDTPQSCGLPPIEEYK--NDYPDDYNEKHEQELTAKQIFMQYVL  250 (452)
T ss_pred             -hccHHHH---------HHHHHHHHHHHHHHHHHHccCCHhhcCCCChhhhh--hccccccccccCCCccHHHHHHHHHH
Confidence             2345444         4666555544 345566678766532111110000  00000000000000000001 12367


Q ss_pred             ccchhHHHHHHHHHHHhhhhhHHHHHHHhhcCCcccCccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 015847          280 KNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILG  352 (399)
Q Consensus       280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~  352 (399)
                      |++.+|...+..++..........++|.|+++.     .|++..+++.......++.+++. ++.+++.||++
T Consensus       251 ~~~~~~~~~l~~~~~~~~~~~~~~~~P~~l~~~-----~g~s~~~~~~~~~~~~~~~~~g~-~~~G~l~dr~~  317 (452)
T PRK11273        251 PNKLLWYIAIANVFVYLLRYGILDWSPTYLKEV-----KHFALDKSSWAYFLYEYAGIPGT-LLCGWMSDKVF  317 (452)
T ss_pred             cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----cCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHc
Confidence            889998888887777777777888999998876     68888889988888888888888 48999999983

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=99.95  E-value=3.8e-25  Score=206.25  Aligned_cols=265  Identities=16%  Similarity=0.259  Sum_probs=202.9

Q ss_pred             ChhHHHHHHHHHHHhhccccchhhhHHHHHHHhccCccccchhhhhhHHHHHHHHHHHhhhhcccccccccCCchhhHHH
Q 015847           39 PITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMG  118 (399)
Q Consensus        39 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~dr~Grr~~l~~~  118 (399)
                      +++.+.......++..+......|.+|.+.+++|.++.+      .++..+++.++..+++++.|+++||+|||+++..+
T Consensus         6 ~~~~l~~~~~~~~~~~~~~~~~~p~~~~i~~~~~~s~~~------~~~~~~~~~~~~~~~~~~~G~l~Dr~grr~~~~~~   79 (394)
T PRK11652          6 NVNLLFMLVLLVAVGQMAQTIYVPAIADMARDLNVREGA------VQAVMAAYLLTYGLSQLFYGPLSDRVGRRPVILVG   79 (394)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHhCCCHHH------HHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHH
Confidence            455666666666666777778889999999999999999      99999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhccchHHHHHHHHHHHhhhccchhhH-HHHHhhhccchhhhHHHHHHHHHHHHHHhHHHHhhhhhcCCC
Q 015847          119 TASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPA  197 (399)
Q Consensus       119 ~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~i~~~l~~~~  197 (399)
                      .++..++.+.+.++++++.+++.|++.|++.+...+. ..+..|.+++++|+++.+..+.+..++..++|.+++.+.+  
T Consensus        80 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~--  157 (394)
T PRK11652         80 MSIFILGTLVALFAHSLTVLIAASAIQGLGTGVGGVMARTLPRDLYEGTQLRHANSLLNMGILVSPLLAPLIGGLLTT--  157 (394)
T ss_pred             HHHHHHHHHHHHHHccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--
Confidence            9999999999999999999999999999988876665 7888999999999999999999999999999999999987  


Q ss_pred             CCCCCcccccccccCCcchhhHHHHHHHHHHH-HHHHHhcccCCCCCCCCCCccchhhhhhhhhhhhhhhccccCCcccc
Q 015847          198 EKYPNLFSSESLFGKFPYFLPCLCISLFAFGV-TIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKK  276 (399)
Q Consensus       198 ~~~~~~~gw~~~f~~~~~~~~~~~~~~~~~~~-~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  276 (399)
                           ..|||..         +.+.++..++. .+..++.||+++.+++++   +                   .....+
T Consensus       158 -----~~g~~~~---------f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-------------------~~~~~~  201 (394)
T PRK11652        158 -----LFGWRAC---------YLFLLLLGAGVTFSMARWMPETRPADARRT---R-------------------VLASYR  201 (394)
T ss_pred             -----ccChHHH---------HHHHHHHHHHHHHHHHHhCCccCccccchh---H-------------------HHHHHH
Confidence                 4455444         46655544443 334456677543221110   0                   011334


Q ss_pred             cccccchhHHHHHHHHHHHhhhhhHHHHHHHhhcCCcccCccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 015847          277 SLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGP  353 (399)
Q Consensus       277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~  353 (399)
                      +.+++|.++...+..+........+....+.+..+.     +|+++.+.+.+.....++..+++ .+.+++.||.++
T Consensus       202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~g~~~~~~~~~~~~~~~~~~~g~-~~~~~l~~~~~~  272 (394)
T PRK11652        202 TLLSNRRFNCYLLMLIGTLAGIAVFEACSGVLMGAV-----LGLSSMTVSILFILPIPAAFFGA-WFAGRPNKRFST  272 (394)
T ss_pred             HHHcChHHHHHHHHHHHHHHHHHHHHHhChHHHHHH-----cCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence            566777776655554444444444455555565554     78889999998888888887777 477888888873

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=99.94  E-value=1.2e-25  Score=215.60  Aligned_cols=319  Identities=14%  Similarity=0.117  Sum_probs=205.0

Q ss_pred             hHHHHHHHHHHHhhccccchhhhHHHHHHHh-----ccCccccchhhhhhHHHHHHHHHHHhhhhcccccccccCCchhh
Q 015847           41 TELFSIWIIVLCTALPISSLFPFLYFMIKDF-----QIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVI  115 (399)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~dr~Grr~~l  115 (399)
                      +.+..+.++.+.++++....+...|.+.+++     +.+..+      .+++.+...++..+++++.|+++||+|||+++
T Consensus        16 ~~~~~~~~~~~~~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~ig~~ig~~~~g~l~d~~Grr~~~   89 (502)
T TIGR00887        16 RAIVIAGVGFFTDSYDLFCISLVTKMLGYVYYHGKGPLPSSV------SAAVNGSASIGTLAGQLFFGWLADKLGRKRVY   89 (502)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccchHHH------HHHHHHHHHHHHHHHHHHHHHHHHhhccHHHH
Confidence            4444667788888888888888888776653     122333      78999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhccch------HHHHHHHHHHHhhhccchhh-HHHHHhhhccchhhhHHHHHHHHHHHHHHhHHHH
Q 015847          116 IMGTASVVIFNTLFGLSVN------FWMAVLTRFLLGSLNGLLGP-IKAYACEIFREEHQALGLSTVSTAWGIGLIIGPA  188 (399)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~~------~~~l~~~r~l~G~~~~~~~~-~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~  188 (399)
                      .++.++..++.++++++++      ++.+++.|++.|++.|...+ ...+++|++|+++|++++++.+....+|..+++.
T Consensus        90 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~g~~~g~~  169 (502)
T TIGR00887        90 GMELIIMIIATVASGLSPGSSPKSVMATLCFWRFWLGVGIGGDYPLSAIITSEFATKKWRGAMMAAVFAMQGFGILAGAI  169 (502)
T ss_pred             HHHHHHHHHHHHHHHHccCcccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999988888765      78899999999999888777 5999999999999999999999999999999999


Q ss_pred             hhhhhcCCCCC-CCCccc-----ccc--cccCCcchhhHHHHHHHHHHHHHHHHhcccCCCCCCCCCCcc---chhhhhh
Q 015847          189 LGGFLAQPAEK-YPNLFS-----SES--LFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSC---DVSYDAL  257 (399)
Q Consensus       189 i~~~l~~~~~~-~~~~~g-----w~~--~f~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~---~~~~~~~  257 (399)
                      ++..+...... +....+     ++.  .. .++||.++.+.++.+++..+..+++||+|++...+++++   .+...+.
T Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~WR~~~~~~~ip~~i~~~~~~~lpESpr~l~~~~~~~~~a~~~~~~~  248 (502)
T TIGR00887       170 VALIVLAGFKHSLEAAADEASCTGSCVPAV-DYMWRILIGFGAVPALLALYFRLTIPETPRYTADVAKDVEQAASDMSAV  248 (502)
T ss_pred             HHHHHHHHhccccccccccccccccccchh-cccHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHhCcchHHHHHHHHHH
Confidence            98776431100 000000     000  11 356888888888888877777888999998643222211   1100110


Q ss_pred             hh-----hhhhhh---hccccCCccccccccc---chhHHHH----HHHHHHHhhhhhHHHHHHHhhcCCcccCccccch
Q 015847          258 ES-----ASAEVK---EEEGREATPKKSLLKN---WPLMSSI----IVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYST  322 (399)
Q Consensus       258 ~~-----~~~~~~---~~~~~~~~~~~~~~~~---~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  322 (399)
                      ..     ..++.+   ++++.....+++++++   ++.+...    ...+.......+...+.|.++.+      .|+++
T Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~p~i~~~------~G~~~  322 (502)
T TIGR00887       249 LQVKIEAEPDEVEKASTAVEVPKASWSDFFTHFFKWRHGKHLLGTAGSWFLLDIAFYGVNLNQKVILSA------IGYSP  322 (502)
T ss_pred             hccccccCcccccchhccccchhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHccccccHHHHHH------HcCCC
Confidence            00     000000   0000011234455542   2221111    11222222223333344555433      45443


Q ss_pred             hhHH-----------H-HHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHhHHhH
Q 015847          323 QMVG-----------E-VLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPY  373 (399)
Q Consensus       323 ~~~g-----------~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  373 (399)
                      ...+           . ......++.+++. ++.+++.||+|||+.+..+..+..+++..+..
T Consensus       323 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~-~~~~~l~dr~gRR~~l~~~~~~~~~~~~~l~~  384 (502)
T TIGR00887       323 PAATNNAYEELYKTAVGNLIIALAGTVPGY-WVTVFLVDIIGRKPIQLMGFFILTVLFFVLGF  384 (502)
T ss_pred             CccchhHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhhhhcchhHHHHHHHHHHHHHHHHHH
Confidence            3211           1 1223334455555 57899999999999988887777766655543

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>PRK12382 putative transporter; Provisional

Probab=99.94  E-value=5.6e-25  Score=204.96  Aligned_cols=276  Identities=16%  Similarity=0.175  Sum_probs=190.0

Q ss_pred             hHHHHHHHHHHHhhccccchhhhHHH-HHHHhccCccccchhhhhhHHHHHHHHHHHhhhhcccccccccCCchhhHHHH
Q 015847           41 TELFSIWIIVLCTALPISSLFPFLYF-MIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGT  119 (399)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~  119 (399)
                      +.++.+.+..++.....+...|.+|. +.+++|.|..+      .|++.+++.++..++++++|+++||+||||++..+.
T Consensus        15 ~~~~~~~~~~~~~~~~~~~~~p~l~~~l~~~lg~s~~~------~g~~~s~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~   88 (392)
T PRK12382         15 FSLFRIAFAVFLTYMTVGLPLPVIPLFVHHDLGFGNTM------VGIAVGIQFLATVLTRGYAGRLADQYGAKRSALQGM   88 (392)
T ss_pred             ccHHHHHHHHHHHHHHHHHHhhhhhHHHHHhcCCcHHH------HHHHHHHHHHHHHHHhhhhhHHHHhhcchHHHHHHH
Confidence            45556666777777778888899985 56899999999      999999999999999999999999999999999998


Q ss_pred             HHHHHHHHHH---hc-----cchHHHHHHHHHHHhhhccchhhH-HHHHhhhccchhhhHHHHHHHHHHHHHHhHHHHhh
Q 015847          120 ASVVIFNTLF---GL-----SVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALG  190 (399)
Q Consensus       120 ~~~~~~~~~~---~~-----~~~~~~l~~~r~l~G~~~~~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~i~  190 (399)
                      +...++.+.+   +.     .++++.+++.|+++|++.+...+. .+++.|++|+|+|++++++.+.+...|..++|+++
T Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~a~~~~~~~~~~g~~~g~~~~  168 (392)
T PRK12382         89 LACGLAGLAYLLAAILPVSAPFKFALLVVGRLILGFGESQLLTGALTWGLGLVGPKHSGKVMSWNGMAMYGALAAGAPLG  168 (392)
T ss_pred             HHHHHHHHHHHhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCccccchhhhHHHHHHHHHHHHHHHHH
Confidence            8776654432   21     357889999999999998887775 88999999999999999999999999999999999


Q ss_pred             hhhcCCCCCCCCcccccccccCCcchhhHHHHHHHHHHHHHHHHhcccCCCCCCCCCCccchhhhhhhhhhhhhhhcccc
Q 015847          191 GFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGR  270 (399)
Q Consensus       191 ~~l~~~~~~~~~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (399)
                      +++.+       ..|         |+..+.+..+..++........||.+++   ++++ +                   
T Consensus       169 ~~l~~-------~~g---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-~-------------------  209 (392)
T PRK12382        169 LLLHS-------HFG---------FAALALTTMVLPLLAWAFNGTVRKVPAH---AGER-P-------------------  209 (392)
T ss_pred             HHHHh-------ccC---------hHHHHHHHHHHHHHHHHHHHhccCCCCC---cccC-c-------------------
Confidence            99987       334         4433344333333222222222322111   0000 0                   


Q ss_pred             CCcccccccccchhHHHHHHHHHHHhhhhhHHHHHHHhhcCCcccCccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015847          271 EATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERI  350 (399)
Q Consensus       271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~  350 (399)
                         +.++..+  .++...+..++..........+.+.|+.+      .+++.  .+......+++.++++ +..+++.||
T Consensus       210 ---~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~~~~~------~~~~~--~~~~~~~~~~~~~~~~-~~~g~l~~r  275 (392)
T PRK12382        210 ---SLWSVVG--LIWKPGLGLALQGVGFAVIGTFVSLYFAS------KGWAM--AGFTLTAFGGAFVLMR-VLFGWMPDR  275 (392)
T ss_pred             ---hHHHHHH--HHHHhHHHHHHHHHHHhHHHHHHHHHHHh------cCCch--hHHHHHHHHHHHHHHH-HHHHHHHHh
Confidence               0011111  11111112222233333455566766654      34433  4555666777777777 478899999


Q ss_pred             hcchhHHHHHHHHHHHHHhHHhHHH
Q 015847          351 LGPIMVARIAGVLTIPLLTSYPYIA  375 (399)
Q Consensus       351 ~~~~~~~~~~~~~~~~~~~~~~~~~  375 (399)
                      +++|+.+..+..+..++...+...+
T Consensus       276 ~g~~~~~~~~~~~~~~~~~~~~~~~  300 (392)
T PRK12382        276 FGGVKVAIVSLLVETVGLLLLWLAP  300 (392)
T ss_pred             cCCCeehHHHHHHHHHHHHHHHHcc
Confidence            9999998888887777766655443

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=99.94  E-value=7.7e-25  Score=205.21  Aligned_cols=293  Identities=22%  Similarity=0.365  Sum_probs=204.6

Q ss_pred             hHHHHHHHHHHHhhccccchhhhHHHHHHHhccCccccchhhhhhHHHHHHHHHHHhhhhcccccccccCCchhhHHHHH
Q 015847           41 TELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTA  120 (399)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~  120 (399)
                      +.....++..++.........+.+|.+.+++|.+..+. ...+.|++.+++.++..+++++.|+++||+|||+++..+.+
T Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~   92 (408)
T PRK09874         14 RNLTVAWLGCFLTGAAFSLVMPFLPLYVEQLGVTGHSA-LNMWSGLVFSITFLFSAIASPFWGGLADRKGRKIMLLRSAL   92 (408)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhCCccchh-HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhCcHHHHHHHHH
Confidence            34556677788888888889999999999999887541 01124889999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhccchHHHHHHHHHHHhhhccchhhHHHHHhhhccchhhhHHHHHHHHHHHHHHhHHHHhhhhhcCCCCCC
Q 015847          121 SVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPIKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKY  200 (399)
Q Consensus       121 ~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~i~~~l~~~~~~~  200 (399)
                      +.+++.+++.+.++++.+++.|++.|++.+...+..+++.|.+|+++|++++++......+|..++|.+++.+.+     
T Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~-----  167 (408)
T PRK09874         93 GMGIVMVLMGLAQNIWQFLILRALLGLLGGFVPNANALIATQVPRNKSGWALGTLSTGGVSGALLGPLAGGLLAD-----  167 (408)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhHHhHHHHHHHhcCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH-----
Confidence            999999988889999999999999999766544457888999999999999999999999999999999999987     


Q ss_pred             CCcccccccccCCcchhhHHHHHHHHHHHHH-HHHhcccCCCCCCCCCCccchhhhhhhhhhhhhhhccccCCccccccc
Q 015847          201 PNLFSSESLFGKFPYFLPCLCISLFAFGVTI-AAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLL  279 (399)
Q Consensus       201 ~~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~-~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  279 (399)
                        ..+||..|         .+.++..++..+ ..+.+||++++.+++++ .+                    .++..+.+
T Consensus       168 --~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--------------------~~~~~~~~  215 (408)
T PRK09874        168 --SYGLRPVF---------FITASVLFLCFLVTLFCIRENFQPVSKKEM-LH--------------------MREVVTSL  215 (408)
T ss_pred             --HhCHHHHH---------HHHHHHHHHHHHHHHHHhccCcccccchhh-hH--------------------HHHHHHhC
Confidence              44555444         666655554433 34555654322111100 00                    00112334


Q ss_pred             ccchhHHHH-HHHHHHHhhhhhHHHHHHHhhcCCcccCccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHH
Q 015847          280 KNWPLMSSI-IVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVAR  358 (399)
Q Consensus       280 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  358 (399)
                      ++++++... ...+...........+++.|..+....  .+......+.+....+++..++. +..+++.||+++++.+.
T Consensus       216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~g~~~~~~~l~~~~~~-~~~g~l~dr~g~~~~~~  292 (408)
T PRK09874        216 KNPKLVLSLFVTTLIIQVATGSIAPILTLYVRELAGN--VSNIAFISGMIASVPGVAALLSA-PRLGKLGDRIGPEKILI  292 (408)
T ss_pred             cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--chHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhccccchhHH
Confidence            566654432 223333334444555666665542100  01111234556666677777777 47889999999999988


Q ss_pred             HHHHHHHHHHhHHhHH
Q 015847          359 IAGVLTIPLLTSYPYI  374 (399)
Q Consensus       359 ~~~~~~~~~~~~~~~~  374 (399)
                      .+.....++.+...+.
T Consensus       293 ~~~~~~~~~~~~~~~~  308 (408)
T PRK09874        293 TALIFSVLLLIPMSFV  308 (408)
T ss_pred             HHHHHHHHHHHHHHHh
Confidence            8877766666554443

>TIGR00896 CynX cyanate transporter

Probab=99.94  E-value=8.2e-25  Score=201.06  Aligned_cols=267  Identities=15%  Similarity=0.088  Sum_probs=202.5

Q ss_pred             cccchhhhHHHHHHHhccCccccchhhhhhHHHHHHHHHHHhhhhcccccccccCCchhhHHHHHHHHHHHHHHhccchH
Q 015847           56 PISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNF  135 (399)
Q Consensus        56 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~  135 (399)
                      ......+.+|.+.+++|.+..+      .++..+.+.++..+++++.|+++||+|||+++.++.++..++.+.+ ..++.
T Consensus        15 ~~~~~~~~lp~l~~~~~~s~~~------~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~-~~~~~   87 (355)
T TIGR00896        15 ALTSVGPLLPQIRSALGMSFSV------AGLLTALPVLCFAVLAPLAPWLARRFGEERSVAAGLLLIAAGILIR-SAPGT   87 (355)
T ss_pred             ccccCcccHHHHHHHhCCCHHH------HHHHHHHHHHHHHHHHHhHHHHHHHhCchHHHHHHHHHHHHHHHHH-HhccH
Confidence            4466789999999999999999      9999999999999999999999999999999999998888888777 77889


Q ss_pred             HHHHHHHHHHhhhccchhhH-HHHHhhhccchhhhHHHHHHHHHHHHHHhHHHHhhhhhcCCCCCCCCcccccccccCCc
Q 015847          136 WMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFP  214 (399)
Q Consensus       136 ~~l~~~r~l~G~~~~~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~i~~~l~~~~~~~~~~~gw~~~f~~~~  214 (399)
                      +.+++.|++.|++.+...+. ..++.|++| ++|++++++.+....+|..+++.+++.+.+       ..+       .+
T Consensus        88 ~~l~~~~~~~g~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~i~~~~~~~l~~-------~~~-------~~  152 (355)
T TIGR00896        88 ALLFAGTALIGVGIAIINVLLPSLIKRDFP-QRVGLMTGLYSMALMGGAALAAAATVPLAQ-------HSG-------GH  152 (355)
T ss_pred             HHHHHHHHHHHHHHHHHhccchHHHHHhCc-chhhHHHHHHHHHHHHHHHHHHHHHHHHHH-------hhh-------hh
Confidence            99999999999998876664 778888886 689999999999999999999999998876       211       11


Q ss_pred             chhhHHHHHHHHHHHHHHHHhcccCCCCCCCCCCccchhhhhhhhhhhhhhhccccCCcccccccccchhHHHHHHHHHH
Q 015847          215 YFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKNWPLMSSIIVYCVF  294 (399)
Q Consensus       215 ~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  294 (399)
                      |+..+...++..++..  ..++|+.+++++++++                     ......++.+|+|.++...+..++.
T Consensus       153 w~~~f~~~~~~~~~~~--~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~  209 (355)
T TIGR00896       153 WQQALAWWALPALLAL--LAWIPQVRRRVAANQT---------------------TTRLTPVRIWRSPLAWQVTVFFGLQ  209 (355)
T ss_pred             HHHHHHHHHHHHHHHH--HHHhhhhccccCCCCC---------------------CCCCCCchhhcCHhHHHHHHHHHHH
Confidence            3333344444333222  2334544322111000                     0112345677888888776666666


Q ss_pred             HhhhhhHHHHHHHhhcCCcccCccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchhHHHHHHHHHHHHHhHHhH
Q 015847          295 SLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERIL-GPIMVARIAGVLTIPLLTSYPY  373 (399)
Q Consensus       295 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~  373 (399)
                      .........++|.|+++      .|+++.+.+.+.+...++.++++. ..+++.||+ ++|+.+..+..+.+++...+.+
T Consensus       210 ~~~~~~~~~~lp~~~~~------~g~~~~~~g~~~~~~~~~~i~~~~-~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~  282 (355)
T TIGR00896       210 SGLYYSLIGWLPAILIS------HGASAATAGSLLALMQLAQAASAL-LIPALARRVKDQRGIVAVLAVLQLVGLCGLLF  282 (355)
T ss_pred             HHHHHHHHHHHHHHHHH------cCCCHHHHHHHHHHHHHHHHHHHH-hHHHHHhhhccchHHHHHHHHHHHHHHHHHHH
Confidence            66677777888988865      688999999999999999999995 889999999 4566666666666666655544


Q ss_pred             H
Q 015847          374 I  374 (399)
Q Consensus       374 ~  374 (399)
                      .
T Consensus       283 ~  283 (355)
T TIGR00896       283 A  283 (355)
T ss_pred             h
Confidence            3

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=99.94  E-value=1.3e-24  Score=202.38  Aligned_cols=281  Identities=16%  Similarity=0.175  Sum_probs=206.5

Q ss_pred             HHHHHHHHHhhccccchhhhHH-HHHHHhccCccccchhhhhhHHHHHHHHHHHhhhhcccccccccCCchhhHHHHHHH
Q 015847           44 FSIWIIVLCTALPISSLFPFLY-FMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASV  122 (399)
Q Consensus        44 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~  122 (399)
                      ..+....++.........|+++ ++.+++|.+..+      .|+..+...+...+.+++.|+++||+|||+++..+.++.
T Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~------~gl~~~~~~l~~~~~~~~~G~l~dr~g~k~~l~~~~~~~   86 (400)
T PRK11646         13 YFLLIDNMLVVLGFFVVFPLISIRFVDQLGWAAVM------VGIALGLRQFIQQGLGIFGGAIADRFGAKPMIVTGMLMR   86 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHH------HHHHHHHHHHHHHHHHhhhhHHHHHhCchHHHHHHHHHH
Confidence            3344566666666677788887 456889999999      999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhccchHHHHHHHHHHHhhhccchhhH-HHHHhhhccchhhhHHHHHHHHHHHHHHhHHHHhhhhhcCCCCCCC
Q 015847          123 VIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYP  201 (399)
Q Consensus       123 ~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~i~~~l~~~~~~~~  201 (399)
                      +++.+.+.++++++.+++.|+++|++.+...+. .+++.|.+|+++|++++++.+...++|..+||.+++++.+      
T Consensus        87 ~~~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~g~l~~------  160 (400)
T PRK11646         87 AAGFATMAIAHEPWLLWLSCILSGLGGTLFDPPRTALVIKLIRPHQRGRFFSLLMMQDSAGAVIGALLGSWLLQ------  160 (400)
T ss_pred             HHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------
Confidence            999999999999999999999999998877775 8999999999999999999999999999999999999973      


Q ss_pred             CcccccccccCCcchhhHHHHHHHHHHHH-HHHHhcccCCCCCCCCCCccchhhhhhhhhhhhhhhccccCCcccccccc
Q 015847          202 NLFSSESLFGKFPYFLPCLCISLFAFGVT-IAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLK  280 (399)
Q Consensus       202 ~~~gw~~~f~~~~~~~~~~~~~~~~~~~~-~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  280 (399)
                        .|||+.|         .+.++..++.. +..+..||.++.   +.+  ++                  .....++.++
T Consensus       161 --~g~~~~f---------~~~~~~~~~~~i~~~~~~~~~~~~---~~~--~~------------------~~~~~~~~~~  206 (400)
T PRK11646        161 --YDFRLVC---------ATGAVLFVLAAAFNAWLLPAYKLS---TVR--TP------------------VREGMTRVLR  206 (400)
T ss_pred             --hhHHHHH---------HHHHHHHHHHHHHHHHhCCccccc---ccc--hh------------------hHHHHHHHHc
Confidence              3444443         55555544433 333445542211   000  00                  0113445677


Q ss_pred             cchhHHHHHHHHHHHhhhhhHHHHHHHhhcCCcccCccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHH
Q 015847          281 NWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIA  360 (399)
Q Consensus       281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  360 (399)
                      +|+++...+..+...........++|.|.++.      +.++.+.+.+++..++..........++.+||.+.++.+..+
T Consensus       207 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~------~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~  280 (400)
T PRK11646        207 DKRFVTYVLTLTGYYMLAVQVMLMLPIMVNDI------AGSPSAVKWMYAIEACLSLTLLYPIARWSEKRFRLEHRLMAG  280 (400)
T ss_pred             CchHHHHHHHHHHHHHHHHHHHHhhhhhHHhh------cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHH
Confidence            88877655554444433334455677777653      346778888888877777666555667777777766666677


Q ss_pred             HHHHHHHHhHHhHHHH
Q 015847          361 GVLTIPLLTSYPYIAM  376 (399)
Q Consensus       361 ~~~~~~~~~~~~~~~~  376 (399)
                      ..+.+++...+...+.
T Consensus       281 ~~~~~~~~~~l~~~~~  296 (400)
T PRK11646        281 LLIMSLSMFPIGMVSN  296 (400)
T ss_pred             HHHHHHHHHHHHHhhh
Confidence            7777766666554443

>PRK10054 putative transporter; Provisional

Probab=99.94  E-value=5.3e-25  Score=204.71  Aligned_cols=284  Identities=14%  Similarity=0.171  Sum_probs=213.8

Q ss_pred             hHHHHHHHHHHHhhccccchhhhHHH-HHHHhccCccccchhhhhhHHHHHHHHHHHhhhhcccccccccCCchhhHHHH
Q 015847           41 TELFSIWIIVLCTALPISSLFPFLYF-MIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGT  119 (399)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~  119 (399)
                      +.++.+....++...+.+...+.+|. +.+++|.+..+      .|+..+.+.++..+++++.|+++||+|||++++++.
T Consensus         7 ~~~~~l~~~~~~~~~g~~~~~~~l~~~l~~~~g~s~~~------~g~~~s~~~~~~~~~~~~~G~l~Dr~g~k~~~~~~~   80 (395)
T PRK10054          7 RSTSALLASSLLLTIGRGATLPFMTIYLSRQYSLSVDL------IGYAMTIALTIGVVFSLGFGILADKFDKKRYMLLAI   80 (395)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHHHHH
Confidence            34556667777788888888888874 55789999999      999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhccchHHHHHHHHHHHhhhccchhhH-HHHHhhhccchhhhHHHHHHHHHHHHHHhHHHHhhhhhcCCCC
Q 015847          120 ASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAE  198 (399)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~i~~~l~~~~~  198 (399)
                      ++..++.+..+++++++.++++|.+.|.+.+...+. .++..|.+|+++|++++++.+...++|..++|.+++++.+   
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lg~~igp~l~~~l~~---  157 (395)
T PRK10054         81 TAFASGFIAIPLVNNVTLVVLFFALINCAYSVFSTVLKAWFADNLSSTSKTKIFSLNYTMLNIGWTVGPPLGTLLVM---  157 (395)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
Confidence            999999999999999999998998888876666664 8899999999999999999999999999999999998864   


Q ss_pred             CCCCcccccccccCCcchhhHHHHHHHHHHHHH-HHHhcccCCCCCCCCCCccchhhhhhhhhhhhhhhccccCCccccc
Q 015847          199 KYPNLFSSESLFGKFPYFLPCLCISLFAFGVTI-AAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKS  277 (399)
Q Consensus       199 ~~~~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~-~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  277 (399)
                           .||+..|         ...++..++.++ ..+.+||+++++++++   ++                   ..+.++
T Consensus       158 -----~g~~~~f---------~~~~~~~~i~~i~~~~~~~~~~~~~~~~~---~~-------------------~~~~~~  201 (395)
T PRK10054        158 -----QSINLPF---------WLAAICSAFPLVFIQIWVQRSEKAIATET---GS-------------------VWSPSV  201 (395)
T ss_pred             -----hccCcHH---------HHHHHHHHHHHHHHHHHHhccccccccch---hh-------------------hhhhhh
Confidence                 3454444         656555555433 3344555432211100   00                   012246


Q ss_pred             ccccchhHHHHHHHHHHHhhhhhHHHHHHHhhcCCcccCccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHH
Q 015847          278 LLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVA  357 (399)
Q Consensus       278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  357 (399)
                      .+++|+++...+..++.......+..+.+.|....   .+.+.+....+.++...++.....+. ..+++.||.++|+.+
T Consensus       202 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~g~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~l  277 (395)
T PRK10054        202 LLQDKALLWFTCSGFLASFVSGAFASCISQYVMVV---ADSDFAEKVVAVVLPVNAAMVVSLQY-SVGRRLNAANIRPLM  277 (395)
T ss_pred             hccCceehHHHHHHHHHHHHHHHhhhhHHHHHHHh---cccchHHHHHHHHHHhhhhheeeehh-HHHHHHccCCchhHH
Confidence            78888888777776666655555555566665432   12566777888888888777777763 667788889999988


Q ss_pred             HHHHHHHHHHHhHHhH
Q 015847          358 RIAGVLTIPLLTSYPY  373 (399)
Q Consensus       358 ~~~~~~~~~~~~~~~~  373 (399)
                      ..+..+..++...+..
T Consensus       278 ~~~~~~~~~~~~~~~~  293 (395)
T PRK10054        278 TAGTLCFVIGLVGFIF  293 (395)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            8888777777665544

>TIGR00898 2A0119 cation transport protein

Probab=99.94  E-value=1.1e-25  Score=216.60  Aligned_cols=279  Identities=17%  Similarity=0.215  Sum_probs=198.7

Q ss_pred             hhHHHHHHHhccC---ccccchhhhhhHHHHHHHHHHHhhhhcccccccccCCchhhHHHHHHHHHHHHHHhccchHHHH
Q 015847           62 PFLYFMIKDFQIA---KREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMA  138 (399)
Q Consensus        62 ~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l  138 (399)
                      +..+.+.+|++++   ..+      .++..+++.++..+++++.|+++||+|||++++++.++.+++.++.+++++++.+
T Consensus       110 ~~~~~i~~e~~l~c~~~~~------~~~~~s~~~~g~~~g~~~~g~l~Dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~  183 (505)
T TIGR00898       110 TFSSTIVTEWDLVCEDAWK------VDLTQSCFFVGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAFSPNYTVF  183 (505)
T ss_pred             cccccEEEEecceechHHH------HHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHHcccHHHH
Confidence            5667888999998   677      9999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhhccchhh-HHHHHhhhccchhhhHHHHHHHHHHHHHHhHHHHhhhhhcCCCCCCCCcccccccccCCcchh
Q 015847          139 VLTRFLLGSLNGLLGP-IKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFL  217 (399)
Q Consensus       139 ~~~r~l~G~~~~~~~~-~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~i~~~l~~~~~~~~~~~gw~~~f~~~~~~~  217 (399)
                      ++.|++.|++.+...+ ..+++.|++|+++|+++.++...+..+|.+++|.+++.+.+                   |+.
T Consensus       184 ~~~r~l~G~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~-------------------wr~  244 (505)
T TIGR00898       184 LVFRLLVGMGIGGIWVQAVVLNTEFLPKKQRAIVGTLIQVFFSLGLVLLPLVAYFIPD-------------------WRW  244 (505)
T ss_pred             HHHHHHHHhhccchHHHHHHHhheecChhhhHHHHHHHHHHHHHHHHHHHHHHHHhhH-------------------HHH
Confidence            9999999999888776 49999999999999999999999999999999998876642                   444


Q ss_pred             hHHHHHHHHHHHHHHHHhcccCCCCCCCCCCccchh--hhhhhh---------hhh---hhhhccccCCcccccccccch
Q 015847          218 PCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVS--YDALES---------ASA---EVKEEEGREATPKKSLLKNWP  283 (399)
Q Consensus       218 ~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~--~~~~~~---------~~~---~~~~~~~~~~~~~~~~~~~~~  283 (399)
                      .+.+.+++.++..+..+++||++++...+.+.++..  .++..+         ..+   +.++++.+.+...++++++|.
T Consensus       245 ~~~~~~i~~~~~~~~~~~~~esp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  324 (505)
T TIGR00898       245 LQLAVSLPTFLFFLLSWFVPESPRWLISQGRIEEALKILQRIAKINGKKLPAEVLSLSLEKDLSSSKKQYSFLDLFRTPN  324 (505)
T ss_pred             HHHHHHHHHHHHHHHHHhcCCChHHHHHCCCHHHHHHHHHHHHHHcCCCCCHHHHhhhhhhhhhhccCCCcHHHHhCChH
Confidence            447777777766666688899887543322211111  000000         000   000001111235667888888


Q ss_pred             hHHHHHHHHHHHhhhhhHHHHHHHhhcCCcccCccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHH
Q 015847          284 LMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVL  363 (399)
Q Consensus       284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  363 (399)
                      ++...+...+..+........++.+...      .+.+..   ......++..+++. ++.+++.||+|||+.+..+.++
T Consensus       325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~---~~~~~~~~~~i~~~-~~~~~l~dr~grr~~~~~~~~~  394 (505)
T TIGR00898       325 LRKTTLCLMMLWFTTAFSYYGLVLDLGN------LGGNIY---LDLFISGLVELPAK-LITLLLIDRLGRRYTMAASLLL  394 (505)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhccccc------cCCChH---HHHHHHHHHHHHHH-HHHHHHHHHhCCHHHHHHHHHH
Confidence            8776655544433322222222322221      344433   23334456666666 4788999999999999988888


Q ss_pred             HHHHHhHHhHHH
Q 015847          364 TIPLLTSYPYIA  375 (399)
Q Consensus       364 ~~~~~~~~~~~~  375 (399)
                      .+++.+.+.+.+
T Consensus       395 ~~~~~l~~~~~~  406 (505)
T TIGR00898       395 AGVALLLLLFVP  406 (505)
T ss_pred             HHHHHHHHHHcC
Confidence            887776665543

>PRK10489 enterobactin exporter EntS; Provisional

Probab=99.94  E-value=3.2e-25  Score=208.24  Aligned_cols=284  Identities=13%  Similarity=0.081  Sum_probs=211.4

Q ss_pred             HHHHHHHHhhccccchhhhHHHHHHHhccCccccchhhhhhHHHHHHHHHHHhhhhcccccccccCCchhhHHHHHHHHH
Q 015847           45 SIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVI  124 (399)
Q Consensus        45 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~  124 (399)
                      .+....++..+......+.+|.+.++++.++.+      .|++.+.+.++..+++++.|+++||+|||+++..+.++.++
T Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~------~g~~~~~~~l~~~~~~~~~G~l~dr~g~~~~l~~~~~~~~~   94 (417)
T PRK10489         21 AVFIARFISIFGLGLLGVAVPVQIQMMTGSTLQ------VGLSVTLTGGAMFIGLMVGGVLADRYDRKKLILLARGTCGL   94 (417)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH------HHHHHHHHHHHHHHHHHhhHHHhhhcCCceEEEehHHHHHH
Confidence            344456666677778888899999999888888      99999999999999999999999999999999988877777


Q ss_pred             HHHHHh-----ccchHHHHHHHHHHHhhhccchhhH-HHHHhhhccchhhhHHHHHHHHHHHHHHhHHHHhhhhhcCCCC
Q 015847          125 FNTLFG-----LSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAE  198 (399)
Q Consensus       125 ~~~~~~-----~~~~~~~l~~~r~l~G~~~~~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~i~~~l~~~~~  198 (399)
                      +.+..+     ..++++.+++.|++.|++.+...+. .+++.|++|+++|+++.++.....++|..+||.+++.+.+   
T Consensus        95 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~g~l~~---  171 (417)
T PRK10489         95 GFIGLALNAFLPEPSLLAIYLLGLWDGFFGSLGVTALLAATPALVGRENLMQAGAITMLTVRLGSVISPALGGLLIA---  171 (417)
T ss_pred             HHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHH---
Confidence            665443     2567889999999999988877665 8899999999999999999999999999999999999987   


Q ss_pred             CCCCcccccccccCCcchhhHHHHHHHHHHHHHHHHhcccCCCCCCCCCCccchhhhhhhhhhhhhhhccccCCcccccc
Q 015847          199 KYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSL  278 (399)
Q Consensus       199 ~~~~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  278 (399)
                          ..||++.         +.+.++..++..+..+.+||++++++++++..+                  +..+..+..
T Consensus       172 ----~~~~~~~---------~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~------------------~~~~~~~~~  220 (417)
T PRK10489        172 ----AGGVAWN---------YGLAAAGTFITLLPLLRLPALPPPPQPREHPLR------------------SLLAGFRFL  220 (417)
T ss_pred             ----HHhhHHH---------HHHHHHHHHHHHHHHHhCCCCCCCCcccccchH------------------HHHHHHHHH
Confidence                3444443         356555555555556667765432211100000                  001123345


Q ss_pred             cccchhHHHHHHHHHHHhhhhhHHHHHHHhhcCCcccCccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHH
Q 015847          279 LKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVAR  358 (399)
Q Consensus       279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  358 (399)
                      +++|.++...+..++... ......++|.|..+.     +|.++.+.|.+.+..+++.+++.. +.+++.||.++++.+.
T Consensus       221 ~~~~~~~~~~~~~~~~~~-~~~~~~~~p~~~~~~-----~g~~~~~~g~~~~~~~~g~~ig~~-~~~~l~~~~~~~~~l~  293 (417)
T PRK10489        221 LASPVVGGIALLGGLLTM-ASAVRVLYPALADEV-----WQMGAAQIGLLYAAVPLGAALGAL-TSGWLAHSARPGLLML  293 (417)
T ss_pred             HcChHHHHHHHHHHHHHH-HHhHHHhhHHHHHhc-----cCCChhHhHHHHHHHHHHHHHHHH-HHHHhhhccCcchHHH
Confidence            677776655544444332 345666788887775     788999999999999999999985 7889999877777777


Q ss_pred             HHHHHHHHHHhHHhHHH
Q 015847          359 IAGVLTIPLLTSYPYIA  375 (399)
Q Consensus       359 ~~~~~~~~~~~~~~~~~  375 (399)
                      .+.++..++++.+...+
T Consensus       294 ~~~~~~~~~~~~~~~~~  310 (417)
T PRK10489        294 LSTLGSFLAVGLFGLMP  310 (417)
T ss_pred             HHHHHHHHHHHHHHccc
Confidence            77777666666554443

>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.94  E-value=1.4e-25  Score=208.65  Aligned_cols=277  Identities=17%  Similarity=0.248  Sum_probs=221.1

Q ss_pred             HHhccCccccchhhhhhHHHHHHHHHHHhhhhcccccccccCCchhhHHHHHHHHHHHHHHhccc--hHHHHHHHHHHHh
Q 015847           69 KDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSV--NFWMAVLTRFLLG  146 (399)
Q Consensus        69 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~--~~~~l~~~r~l~G  146 (399)
                      .+++.+..+      .+++.+++..|+++++++.|+++||+|-|+++..+.++.++++++...+.  +++.+++.|+++|
T Consensus        66 ~~~~ws~~~------k~~i~ss~~~G~i~~~iP~g~l~~k~G~r~v~~~~~~~sa~~t~l~P~aa~~~~~~~~~~R~lqG  139 (466)
T KOG2532|consen   66 GEYDWSSTE------KGLIFSSFFWGYILGQIPGGYLADKFGARRVFFISGLISALLTLLTPLAASIGFYLLLVLRFLQG  139 (466)
T ss_pred             ceecCCHHH------HHHHHHHHHHHHHHHHcCcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHhH
Confidence            467788888      99999999999999999999999999999999999999999999988864  4567899999999


Q ss_pred             hhccchhhH-HHHHhhhccchhhhHHHHHHHHHHHHHHhHHHHhhhhhcCCCCCCCCcccccccccCCcchhhHHHHHHH
Q 015847          147 SLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLF  225 (399)
Q Consensus       147 ~~~~~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~i~~~l~~~~~~~~~~~gw~~~f~~~~~~~~~~~~~~~  225 (399)
                      ++.|...|+ ..+.+.|.|++||++..++...+..+|.+++-+++|++.+.      .+||+..|         ++.+..
T Consensus       140 l~~g~~~pa~~~i~~~W~P~~Ers~~~ail~~g~q~g~v~~mp~sg~lc~s------~~GW~sif---------Y~~g~~  204 (466)
T KOG2532|consen  140 LGQGVLFPAIGSILAKWAPPNERSTFIAILTAGSQLGTIITMPVSGLLCES------SLGWPSIF---------YVFGIV  204 (466)
T ss_pred             HHHhHHHhhhhceeeeECCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhcc------CCCCchHH---------HHHHHH
Confidence            999998886 99999999999999999999999999999999999999982      25666555         888888


Q ss_pred             HHHHHHHHHh-cccCCCCCCCCCCccchhhhhhhhhhhhhhhccccCCcccccccccchhHHHHHHHHHHHhhhhhHHHH
Q 015847          226 AFGVTIAAFW-LPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEI  304 (399)
Q Consensus       226 ~~~~~~~~~~-~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  304 (399)
                      +++..++++. ..|+|.+++.-.++ |  .+.+++.+.+...+ ++.+.+++++++++.+|...+..+..+.....+..+
T Consensus       205 g~i~~~~w~~~~~d~P~~h~~is~~-E--l~~I~~~k~~~~~~-~~~~vP~~~i~ts~~vwai~~~~f~~~~~~~~l~~y  280 (466)
T KOG2532|consen  205 GLIWFILWFLFYSDSPSKHPNISEK-E--LKYIEKGKSEAHVK-KKPPVPYKAILTSPPVWAIWISAFGGNWGFYLLLTY  280 (466)
T ss_pred             HHHHHHHHHHHhcCCcccCCCCCHH-H--HHHHHhcccccccC-CCCCCCHHHHHcCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8776666544 45555442221111 1  11111111111111 115678999999999999999999999999999999


Q ss_pred             HHHhhcCCcccCccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcc---------hhHHHHHHHHHHHHHhHHhHHH
Q 015847          305 FSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGP---------IMVARIAGVLTIPLLTSYPYIA  375 (399)
Q Consensus       305 ~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~  375 (399)
                      .|.|+.++     +|++..+.|++.++..+...+... +++.++||+.+         |..-.++....+++++.+++.+
T Consensus       281 ~PtY~~~V-----L~f~v~~~G~~salP~l~~~~~k~-~~g~lsD~l~~~~ls~t~~rkifn~i~~~~~ai~l~~l~~~~  354 (466)
T KOG2532|consen  281 LPTYLKEV-----LGFDVRETGFLSALPFLAMAIVKF-VAGQLSDRLTFRILSETTVRKIFNTIAFGGPAVFLLVLAFTS  354 (466)
T ss_pred             hhHHHHHH-----hCCChhhhhHHHHHHHHHHHHHHH-HHHHHHHHHhhccCchHhHHHHHHhHHHHHHHHHHHeeeecC
Confidence            99999998     899999999999999999999984 89999998754         2223455666666666666665


Q ss_pred             H
Q 015847          376 M  376 (399)
Q Consensus       376 ~  376 (399)
                      .
T Consensus       355 ~  355 (466)
T KOG2532|consen  355 D  355 (466)
T ss_pred             C
Confidence            3

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=99.94  E-value=6.4e-25  Score=207.24  Aligned_cols=284  Identities=14%  Similarity=0.066  Sum_probs=202.0

Q ss_pred             hHHHHHHHHHHHhhccccchhhhHHHHHHHhccCccccchhhhhhHHHHHHHHHHHhhhhcccccccccCCchhhHHHHH
Q 015847           41 TELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTA  120 (399)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~  120 (399)
                      +.++...+.....+..........|.+.+ +|.++.+      .++..+++.++..+++++.|+++||+|||+++..+.+
T Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~g~s~~~------~g~~~~~~~~~~~~~~~~~G~l~dr~g~~~~~~~~~~   99 (438)
T TIGR00712        27 QVFLGIFFGYAAYYLVRKNFALAMPYLVE-QGFSKGE------LGFALSAISIAYGFSKFIMGSVSDRSNPRVFLPAGLI   99 (438)
T ss_pred             HHHHHHHHHHHHHHHHhccHHhhhHHHHH-cCCCHhH------hHHHHHHHHHHHHHhhhccchhhhccCCceehHHHHH
Confidence            33344445555556666666667777765 5999999      9999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhcc----chHHHHHHHHHHHhhhccchhh-HHHHHhhhccchhhhHHHHHHHHHHHHHHhHHHHhhhhhcC
Q 015847          121 SVVIFNTLFGLS----VNFWMAVLTRFLLGSLNGLLGP-IKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQ  195 (399)
Q Consensus       121 ~~~~~~~~~~~~----~~~~~l~~~r~l~G~~~~~~~~-~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~i~~~l~~  195 (399)
                      +.+++.++.+..    ++++.+.+.|++.|++.+...+ ....+.|++|+++|++++++.+.+.++|+.++|.+.+...+
T Consensus       100 ~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~g~~~~~~l~~~~~~  179 (438)
T TIGR00712       100 LSAAVMLLMGFVPWATSSIAIMFVLLFLNGWFQGMGWPPCGRTMVHWWSQSERGTIVSIWNCAHNIGGGIPPLLVLLGMA  179 (438)
T ss_pred             HHHHHHHHHhccccccchHHHHHHHHHHHHHHhhcchHHHHHHHHHhcCcccchhHHHHHHHHHHhHhHHHHHHHHHHHH
Confidence            999888877664    4677888999999999887666 58889999999999999999999999999999888776543


Q ss_pred             CCCCCCCcccccccccCCcchhhHHHHHHHHHHH-HHHHHhcccCCCCCCCCCCccchhhhhhhhhhhhhhhccccCCcc
Q 015847          196 PAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGV-TIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATP  274 (399)
Q Consensus       196 ~~~~~~~~~gw~~~f~~~~~~~~~~~~~~~~~~~-~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  274 (399)
                      .      ..+||..|         +..++..++. ++..+.+||++++...++.+..+. +..+...++ .+++.+.+..
T Consensus       180 ~------~~~w~~~f---------~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~  242 (438)
T TIGR00712       180 W------FNDWHAAL---------YFPAICAIIVALFAFAMMRDTPQSCGLPPIEEYRN-DYPDDYNEK-AEQELTAKEI  242 (438)
T ss_pred             H------hhhhHHHH---------HHHHHHHHHHHHHHHHhccCCHHhcCCCCchhccc-ccccccccc-cccccchHHH
Confidence            1      23455444         6666665553 444566777654321111000000 000000000 0000000001


Q ss_pred             -cccccccchhHHHHHHHHHHHhhhhhHHHHHHHhhcCCcccCccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 015847          275 -KKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGP  353 (399)
Q Consensus       275 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~  353 (399)
                       .+..++++.++...+..++......+...++|.|+++.     .|+++.+++.......+..++++. +.+++.||.++
T Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~-----~g~s~~~~~~~~~~~~~~~~ig~~-~~g~l~dr~~~  316 (438)
T TIGR00712       243 FMQYVLPNKLLWYIAIANVFVYLLRYGVLDWSPTYLKEV-----KHFALDKSSWAYFLYEYAGIPGTL-LCGWMSDKVFK  316 (438)
T ss_pred             HHHHHccCchHHHHHHHHHHHHHHHHHHHHhHHHHHHHc-----cCCChhhHHHHHHHHHHHHHHHHH-HHHHHHHHhcc
Confidence             12367888888877776666666667778899998875     688999999999999999999884 89999999864


Q ss_pred             h
Q 015847          354 I  354 (399)
Q Consensus       354 ~  354 (399)
                      +
T Consensus       317 ~  317 (438)
T TIGR00712       317 G  317 (438)
T ss_pred             C
Confidence            3

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=99.94  E-value=4.1e-24  Score=198.21  Aligned_cols=282  Identities=15%  Similarity=0.145  Sum_probs=210.8

Q ss_pred             HHHHHHHHHhhccccchhhhHHHHHHHhccCccccchhhhhhHHHHHHHHHHHhhhhcccccccccCCchhh----HHHH
Q 015847           44 FSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVI----IMGT  119 (399)
Q Consensus        44 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~dr~Grr~~l----~~~~  119 (399)
                      ..+...++......+...|++|.+.+++|.|..+      +|++.+++.+...++++++|+++||+|||+..    ..+.
T Consensus         7 ~~l~~~~~~~~~~~~~~~p~l~~~l~~~g~s~~~------ig~~~s~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~   80 (382)
T TIGR00902         7 RWLALGFFGYFCAYGIFLPFFPAWLKGIGLGEEM------IGLLIGAALIARFAGGLFFAPLIKDANHIIIALRLLALAS   80 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence            3355667777777788999999999999999999      99999999999999999999999999985433    2222


Q ss_pred             HHHHHHHHHHhccchHHHHHHHHHHHhhhccchhhH-HHHHhhhccchhhhHHHHHHHHHHHHHHhHHHHhhhhhcCCCC
Q 015847          120 ASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAE  198 (399)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~i~~~l~~~~~  198 (399)
                      .+..+  ..+..+++++.+++.|+++|.+.+...|. .++..|+  +++|++.+|......++|.+++|.+++.+.+   
T Consensus        81 ~l~~~--~~~~~~~~~~~l~~~~~l~~~~~~~~~p~~~al~~~~--~~~~~~~~g~~~~~~slG~~~g~~l~g~l~~---  153 (382)
T TIGR00902        81 AIFAA--AFSAGAHNAWLLFIAIGLFALFFSAGMPIGDALANTW--QKQFGLDYGKVRLIGSAAFIIGSALFGGLIG---  153 (382)
T ss_pred             HHHHH--HHHHhhhhHHHHHHHHHHHHHHHccchhHHHHHHHHH--HHHcCCCccHHHHHHHHHHHHHHHHHHHHHH---
Confidence            22222  23446789999999999999887666664 6666554  5788999999999999999999999999998   


Q ss_pred             CCCCcccccccccCCcchhhHHHHHHHHHHHHHHHHhcccCCCCCCCCCCccchhhhhhhhhhhhhhhccccCCcccccc
Q 015847          199 KYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSL  278 (399)
Q Consensus       199 ~~~~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  278 (399)
                          .+|||..|         .+.....++.+ ....++|++++++++++  +                +.....+.++.
T Consensus       154 ----~~g~~~~f---------~~~~~~~~~~~-~~~~~~~~~~~~~~~~~--~----------------~~~~~~~~~~~  201 (382)
T TIGR00902       154 ----MFDEQNIL---------AILTAGLAFML-IGFLIKPTIPPKDAIPE--D----------------ESQGDSAFIAL  201 (382)
T ss_pred             ----HcChhHHH---------HHHHHHHHHHH-HHHHcCCCCCCCccccc--c----------------ccccchhHHHH
Confidence                55666554         44443322222 22333443211111100  0                00011235678


Q ss_pred             cccchhHHHHHHHHHHHhhhhhHHHHHHHhhcCCcccCccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHH
Q 015847          279 LKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVAR  358 (399)
Q Consensus       279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  358 (399)
                      +|+|+++...+..++.......+.++.|.|+++      .|.++.++|.+++...+..++.. ...+++.||+++++.+.
T Consensus       202 l~~~~~~~~l~~~~l~~~~~~~~~~~~~~~l~~------~g~s~~~~g~l~~~~~~~~i~~~-~~~~~l~~r~g~~~~l~  274 (382)
T TIGR00902       202 LKNPMNLRFLAAVCLIQGAHAAYYGFSAIYWQA------AGISASATGLLWGIGVLAEIIIF-AFSNKLFQNCSARDLLL  274 (382)
T ss_pred             HcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------CCCCHhHHHHHHHHHHHHHHHHH-HHhHHHHhhCCHHHHHH
Confidence            899999998888888888888888899988865      68999999999998888888887 58899999999999999


Q ss_pred             HHHHHHHHHHhHHhHHHHH
Q 015847          359 IAGVLTIPLLTSYPYIAML  377 (399)
Q Consensus       359 ~~~~~~~~~~~~~~~~~~~  377 (399)
                      ++.+...+....+.+.++.
T Consensus       275 ~~~~~~~~~~~~~~~~~~~  293 (382)
T TIGR00902       275 ISAIACVGRWAIIGAIEAF  293 (382)
T ss_pred             HHHHHHHHHHHHHHhHhhH
Confidence            9999998888877665543

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.93  E-value=2.8e-25  Score=207.08  Aligned_cols=292  Identities=16%  Similarity=0.134  Sum_probs=222.8

Q ss_pred             HHHHHhhccc-cchhhhHHHHHHHhccCccccchhhhhhHHHHHHHHHHHhhhhcccccccccCCchhhHHHHHHHHHHH
Q 015847           48 IIVLCTALPI-SSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFN  126 (399)
Q Consensus        48 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~  126 (399)
                      ..++...... +...+.+..+.+|.+....+      .+.+.++++++++++++++|.+.||++-.+.+....+++.+..
T Consensus        52 ~~y~~~~~d~~si~~a~l~g~~edl~~~~~~------l~~~~t~F~v~Yii~~~p~~~L~~r~~ls~~l~~~~~~w~~~~  125 (495)
T KOG2533|consen   52 YLYFHAYLDKSSIVNASLSGLKEDLKLVGNQ------LGVLDTVFYVGYIIGQFPSGLLGDRFPLSKGLSVSGILWGLFG  125 (495)
T ss_pred             HHHHHHhcchhcchhHHHcCCccccchhhhh------hhhHHHHHHHHHHHHHhhHHHHHHhCChHHHHHHHHHHHHHHH
Confidence            3334444433 23334444455788888888      9999999999999999999999999999999998888888888


Q ss_pred             HHHhccchHHHHHHHHHHHhhhccchhhH-HHHHhhhccchhhhHHHHHHHHHHHHHHhHHHHhhhhhcCCCCCCCCccc
Q 015847          127 TLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFS  205 (399)
Q Consensus       127 ~~~~~~~~~~~l~~~r~l~G~~~~~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~i~~~l~~~~~~~~~~~g  205 (399)
                      ++.+..+|++.+++.|++.|+.++...|+ ..+++.|+.+++|++.++++.+..++|+++|.+++..+.+. .+.....|
T Consensus       126 ~~~~~~~s~~~~ialr~llGl~es~~wP~~~~~lg~wy~~~e~g~r~~~~~a~~~~g~i~ggliA~g~~~~-~~~~~~~g  204 (495)
T KOG2533|consen  126 FLTAAVHSFPGLIALRFLLGLFESGGWPGVVAILGNWYGKSERGLRMGIWYASASLGNIFGGLIAYGVFKL-NGSGGLAG  204 (495)
T ss_pred             HHHHHHhhhHHHHHHHHHHHHHhcccchHHHHHHHhhcChhhhhhhHHHHHHhcchhhHHHHHHHHHhhhh-cCCCCcCC
Confidence            88878999999999999999999998886 99999999999999999999999999999999999987542 11122566


Q ss_pred             ccccccCCcchhhHHHHHHHHHHH-HHHHHhcccCCCCCCCCCCccchh-hhhhhhhhhhhhhccccCCcccccccccch
Q 015847          206 SESLFGKFPYFLPCLCISLFAFGV-TIAAFWLPETLHRHNDDDDSCDVS-YDALESASAEVKEEEGREATPKKSLLKNWP  283 (399)
Q Consensus       206 w~~~f~~~~~~~~~~~~~~~~~~~-~~~~~~~~e~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  283 (399)
                      ||+.|         ++.+++.++. +++.+++|+.|.+..-.+++++.. .++.++......+++ .++...++.+++|.
T Consensus       205 W~~~F---------iI~G~i~~~~gi~~f~~lp~~P~~~~fl~~~ek~~~~~~~~~~~~~~~~~~-~~~~~~~~a~~dp~  274 (495)
T KOG2533|consen  205 WRWLF---------IIEGVITLVLGIVVFFFLPDNPSKAWFLTDEEKELVVERLRESPSGGIENK-FKWKGFKEALKDPG  274 (495)
T ss_pred             ceeeh---------hHHHHHHHHHHheEEEEecCChhhccccchHHHHHHHHHHHhccCCCcccc-cCHHHHHHHHhchh
Confidence            76666         7877777664 455778898887543222211111 111111111111111 44556778899999


Q ss_pred             hHHHHHHHHHHHhhhhhHHHHHHHhhcCCcccCccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHh----cchhHHHH
Q 015847          284 LMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERIL----GPIMVARI  359 (399)
Q Consensus       284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~----~~~~~~~~  359 (399)
                      +|...+..++......++.+++|.|+.+.     .|++..++..+..+..++++++.+ +.++++||+    .++.....
T Consensus       275 vw~~~l~~~~~~lv~~~~~~~lpl~l~~~-----~~~s~~~a~~ls~~~~~~g~v~~i-~ag~lsdr~~~~~~~~~~~~~  348 (495)
T KOG2533|consen  275 VWPFSLCYFFLKLVNYGFSYWLPLYLKSN-----GGYSELQANLLSTPYDVGGIVGLI-LAGYLSDRLKTIFARRLLFIV  348 (495)
T ss_pred             HHHHHHHHHHHhhccccHHHHHHHHHHcC-----CCcChHHhccccchHHhhhHHHHH-HHHHHHHHHhhhHHHHHHHHH
Confidence            99999999999999999999999999884     679999999999999999999985 899999994    44444444


Q ss_pred             HHH
Q 015847          360 AGV  362 (399)
Q Consensus       360 ~~~  362 (399)
                      ...
T Consensus       349 ~~~  351 (495)
T KOG2533|consen  349 FLC  351 (495)
T ss_pred             HHH
Confidence            333

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=99.93  E-value=6.5e-24  Score=196.89  Aligned_cols=275  Identities=14%  Similarity=0.153  Sum_probs=201.5

Q ss_pred             HHHhhccccchhhhHHHHHHHhccCccccchhhhhhHHHHHHHHHHHhhhhcccccccccCCc----hhhHHHHHHHHHH
Q 015847           50 VLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRK----PVIIMGTASVVIF  125 (399)
Q Consensus        50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~dr~Grr----~~l~~~~~~~~~~  125 (399)
                      .+......+...|.+|.+.+++|.|..+      +|+..+++.++..++++++|+++||+|||    +.+.++..+.  .
T Consensus        13 ~~~~~~~~g~~~p~l~~~l~~~g~s~~~------iG~~~~~~~l~~~l~~~~~g~l~dr~g~~~~~~~~~~~~~~~~--~   84 (382)
T PRK11128         13 YFGYFFAYGVFLPFWSVWLKGQGYTPET------IGLLLGAGLVARFLGSLLIAPRVKDPSQLIPALRLLALLTLLF--A   84 (382)
T ss_pred             HHHHHHHHHHHhhhHHHHHHhcCCCHHH------HHHHHHHHHHHHHhhhHHHHHHHhhhcchHHHHHHHHHHHHHH--H
Confidence            4444556688899999999999999999      99999999999999999999999999984    3333222222  2


Q ss_pred             HHHHhccchHHHHHHHHHHHhhhccchhhH-HHHHhhhccchhhhHHHHHHHHHHHHHHhHHHHhhhhhcCCCCCCCCcc
Q 015847          126 NTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLF  204 (399)
Q Consensus       126 ~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~i~~~l~~~~~~~~~~~  204 (399)
                      ......+++++.+++.|++.|++.+...|. .++..++  +++|+++++......++|..+||++++++.+       .+
T Consensus        85 ~~~~~~~~~~~~l~i~~~l~g~~~~~~~~~~~a~~~~~--~~~~~~a~~~~~~~~~lg~~igp~lgg~l~~-------~~  155 (382)
T PRK11128         85 VAFWFGAHSFWLLFVAIGLFNLFFSPLVPLTDALANTW--QKQIGLDYGKVRLWGSIAFVIGSALTGKLVS-------WF  155 (382)
T ss_pred             HHHHHhcccHHHHHHHHHHHHHHHcccccHHHHHHHHH--HhhccCCcchHHHHHHHHHHHHHHHHHHHHH-------Hc
Confidence            233344688999999999999987777765 6666665  4668888999999999999999999999998       44


Q ss_pred             cccccccCCcchhhHHHHHHHHHHHHHHHHhcccCCCCCCCCCCccchhhhhhhhhhhhhhhccccCCcccccccccchh
Q 015847          205 SSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKNWPL  284 (399)
Q Consensus       205 gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  284 (399)
                      |||..         ++..++..++..+..+..||++++.++++   +                .++...+.++++|+|.+
T Consensus       156 g~~~~---------f~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~----------------~~~~~~~~~~i~~~~~~  207 (382)
T PRK11128        156 GEQAI---------LWILTAGVASMLLGQLLRPTIMPQGESRQ---Q----------------ESAGWPAWKALLKEPTV  207 (382)
T ss_pred             ChhHH---------HHHHHHHHHHHHHHHHccCCCCCcccccc---c----------------cccccchHHHHHcChhH
Confidence            55544         45555444433333344454322111100   0                00012356678899999


Q ss_pred             HHHHHHHHHHHhhhhhHHHHHHHhhcCCcccCccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHH
Q 015847          285 MSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLT  364 (399)
Q Consensus       285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  364 (399)
                      +...+..++..........+++.|..+      .|+++.+.|.+.+...+..++.. +..+++.||+++++.+..+.+..
T Consensus       208 ~~~~~~~~l~~~~~~~~~~~~~~~~~~------~g~s~~~~g~~~~~~~~~~~~~~-~~~g~l~~r~~~~~~l~~~~~~~  280 (382)
T PRK11128        208 WRFLLCVSLLQGSHAAYYGFSAIYWQA------AGYSASTIGYLWSLGVVAEVLIF-AFSNRLFRRWSARDLLLLSAICG  280 (382)
T ss_pred             HHHHHHHHHHHHHhHhHHHHHHHHHHH------CCCCHhHHHHHHHHHHHHHHHHH-HHHHHHHHHCCHHHHHHHHHHHH
Confidence            988777777777777777788888754      68899999999998888888877 48889999999999988888888


Q ss_pred             HHHHhHHhHHHH
Q 015847          365 IPLLTSYPYIAM  376 (399)
Q Consensus       365 ~~~~~~~~~~~~  376 (399)
                      ++..+.+...++
T Consensus       281 ~~~~~~~~~~~~  292 (382)
T PRK11128        281 VVRWGLMGSTTA  292 (382)
T ss_pred             HHHHHHHHhhhh
Confidence            877766655443

>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.93  E-value=8e-26  Score=196.74  Aligned_cols=262  Identities=16%  Similarity=0.156  Sum_probs=212.3

Q ss_pred             hhHHHHHHHHHHHhhhhcccccccccCCchhhHHHHHHHHHHHHHHhccchHHHHHHHHHHHhhhccchhhH-HHHHhhh
Q 015847           84 AGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEI  162 (399)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~-~~~~~~~  162 (399)
                      +|++.++..+.+.+.+++.|.+.||+|+|.++++|.+.+..+++++++.++++.++++|.+||+|.++..++ .++++|.
T Consensus       108 iG~LFaskA~~qllvnp~~G~l~~~iGy~ipm~~Gl~vmf~sTilFafg~sy~~l~vAR~LQgvgsA~~~tsglamlAd~  187 (464)
T KOG3764|consen  108 IGLLFASKALVQLLVNPFFGNLIDRIGYKIPMVAGLFVMFLSTILFAFGNSYPMLFVARSLQGVGSAFADTSGLAMLADV  187 (464)
T ss_pred             hhHHHHHHHHHHHHhcccchhhHHHhccccHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHhhhhHHHHHhhhHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999999999999999998886 9999999


Q ss_pred             ccch-hhhHHHHHHHHHHHHHHhHHHHhhhhhcCCCCCCCCcccccccccCCcchhhHHHHHHHHHHHHHHHHhcccCCC
Q 015847          163 FREE-HQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLH  241 (399)
Q Consensus       163 ~~~~-~r~~~~~~~~~~~~~g~~~~p~i~~~l~~~~~~~~~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~  241 (399)
                      +|++ +|++++|+...+.++|..+||.+||.+.+                ..+++.||.+.+++.++-....+++-|+.+
T Consensus       188 f~~d~er~~vmGialgfislG~lvgPpfGGilYe----------------~~Gk~aPFlVL~~v~Lld~~L~l~vi~p~~  251 (464)
T KOG3764|consen  188 FPEDNERGSVMGIALGFISLGVLVGPPFGGILYE----------------FAGKSAPFLVLAIVLLLDGALQLLVIEPTE  251 (464)
T ss_pred             cccchhhhHHHHHHHHHHhccceecCCcccchHh----------------hcCCcCcHHHHHHHHHHHHHHHHheeCccc
Confidence            9965 58999999999999999999999999998                566778889999998887666555544332


Q ss_pred             CCCCCCCccchhhhhhhhhhhhhhhccccCCcccccccccchhHHHHHHHHHHHhhhhhHHHHHHHhhcCCcccCccccc
Q 015847          242 RHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYS  321 (399)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  321 (399)
                      .++++.                      .+..+.++++++|.++.........+.......-.++.|..+.     +.-+
T Consensus       252 ~~~~~~----------------------~~~~~~~~Ll~dP~I~~~agai~~~n~~lafLePtlslwm~e~-----m~~p  304 (464)
T KOG3764|consen  252 MDPDST----------------------EQGTPMWSLLMDPYILLIAGAITFSNSSLAFLEPTLSLWMLET-----MFTP  304 (464)
T ss_pred             cCcccc----------------------ccCccHHHHHhCchHhhhhcchhhccchHHHhCcccHHHHHHh-----ccCC
Confidence            222111                      1123577899999998877776666666666666677776665     5534


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc--chhHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHH
Q 015847          322 TQMVGEVLAITGFSLLVFQLSLYPFLERILG--PIMVARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCA  389 (399)
Q Consensus       322 ~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  389 (399)
                      .-+.|..+....+...++.. +.+.+.||++  |......+.+...++...+++.+.....++.......
T Consensus       305 ~w~~G~~fLp~~~~y~ig~~-lfg~la~k~~~~~wl~~~~gl~~~G~~~~~iP~~~~~~~L~vp~~~l~~  373 (464)
T KOG3764|consen  305 GWEVGLAFLPASLSYAIGTN-LFGKLADKYPHLRWLLSLGGLATVGVSSGPIPFATSIAQLWVPNFGLGF  373 (464)
T ss_pred             CcceeeeecccccchhccCc-hHHHHHHhcCchhHHHHHHHHHHHHHHhchhHhhhhHHHHhhhhHHHHH
Confidence            44889999999999999984 8899999999  6555566777777778888888877776654444333

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=99.93  E-value=1.4e-23  Score=192.26  Aligned_cols=260  Identities=24%  Similarity=0.392  Sum_probs=221.0

Q ss_pred             HHHHHHHHhhccccchhhhHHHHHHHhccCccccchhhhhhHHHHHHHHHHHhhhhcccccccccCCchhhHHHHHHHHH
Q 015847           45 SIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVI  124 (399)
Q Consensus        45 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~  124 (399)
                      .+....+....+.....+..|.+.+++|.+..+      .++..+...++..+++++.|+++||+|||+.+..+.++..+
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~g~~~d~~g~r~~~~~~~~~~~~   76 (352)
T cd06174           3 LLFLGFFLSGLDRGLLSPALPLLAEDLGLSASQ------AGLIVSAFSLGYALGSLLAGYLSDRFGRRRVLLLGLLLFAL   76 (352)
T ss_pred             HHHHHHHHHHHhhhhhHhhHHHHHHHcCCCHHH------HHHHHHHHHHHHHHHHHhHHHHHHHhCCchhhHHHHHHHHH
Confidence            345566777888888999999999999999998      99999999999999999999999999999999999999999


Q ss_pred             HHHHHhccchHHHHHHHHHHHhhhccchhhH-HHHHhhhccchhhhHHHHHHHHHHHHHHhHHHHhhhhhcCCCCCCCCc
Q 015847          125 FNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNL  203 (399)
Q Consensus       125 ~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~i~~~l~~~~~~~~~~  203 (399)
                      +.+...+.++++.+++.|++.|++.+...+. .+++.|++|+|+|++.+++.+....+|..++|.+++.+.+       .
T Consensus        77 ~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-------~  149 (352)
T cd06174          77 GSLLLAFASSLWLLLVGRFLLGLGGGALYPAAAALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGGLLAE-------S  149 (352)
T ss_pred             HHHHHHHhccHHHHHHHHHHHHcccccccHhHHHHHHHhCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHH-------H
Confidence            9999999999999999999999998887775 9999999999999999999999999999999999999987       3


Q ss_pred             ccccccccCCcchhhHHHHHHHHHHHHHHHHhcccCCCCCCCCCCccchhhhhhhhhhhhhhhccccCCcccccccccch
Q 015847          204 FSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKNWP  283 (399)
Q Consensus       204 ~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  283 (399)
                      .+|         +..+.+.++..++..+...+++                                            |.
T Consensus       150 ~~~---------~~~~~~~~~~~~~~~~~~~~~~--------------------------------------------~~  176 (352)
T cd06174         150 LGW---------RWLFLILAILGLLLALLLLFLL--------------------------------------------RL  176 (352)
T ss_pred             hhH---------HHHHHHHHHHHHHHHHHHHHHH--------------------------------------------HH
Confidence            344         4444666666665555444443                                            34


Q ss_pred             hHHHHHHHHHHHhhhhhHHHHHHHhhcCCcccCccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchh-HHHHHHH
Q 015847          284 LMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIM-VARIAGV  362 (399)
Q Consensus       284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~  362 (399)
                      ++...+..++..........+.+.+..+.     .|.+..+.+.......++..++.. +.+++.||.++|+ .+..+..
T Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~i~~~-~~~~~~~~~~~~~~~~~~~~~  250 (352)
T cd06174         177 LLLLALAFFLLSFGYYGLLTYLPLYLQEV-----LGLSAAEAGLLLSLFGLGGILGAL-LGGLLSDRLGRRRLLLLIGLL  250 (352)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHHh-----cCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhhHHHHHHHH
Confidence            66667777777777778888888887764     588999999999999999999984 8889999999999 8888888


Q ss_pred             HHHHHHhHHhHHHH
Q 015847          363 LTIPLLTSYPYIAM  376 (399)
Q Consensus       363 ~~~~~~~~~~~~~~  376 (399)
                      +..++...+...++
T Consensus       251 ~~~i~~~~~~~~~~  264 (352)
T cd06174         251 LAALGLLLLALAPS  264 (352)
T ss_pred             HHHHHHHHHHHhcc
Confidence            88888777765543

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>TIGR00883 2A0106 metabolite-proton symporter

Probab=99.93  E-value=7.3e-24  Score=197.38  Aligned_cols=274  Identities=15%  Similarity=0.135  Sum_probs=192.8

Q ss_pred             HhhccccchhhhHHHHHHHhcc--CccccchhhhhhHHH-----HHHHHHHHhhhhcccccccccCCchhhHHHHHHHHH
Q 015847           52 CTALPISSLFPFLYFMIKDFQI--AKREEDIGSYAGYVG-----SSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVI  124 (399)
Q Consensus        52 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~  124 (399)
                      .+.++...+....+.+.+++..  ++.+      .+...     ....++..+++++.|+++||+|||+++..+.++..+
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~   77 (394)
T TIGR00883         4 VEWFDFYLYGFAAVLVFHTFFPPSGDPL------VALLATFATFAAGFLARPLGAIVFGHFGDRIGRKKTLVITLLMMGI   77 (394)
T ss_pred             hhHHHHHHHHHHHHHHHHHhcCCCCChH------HHHHHHHHHHHHHHHHhhhHHHHhhhhhhhhhhHHHHHHHHHHHHH
Confidence            4556666677777777777543  3333      33333     334444567899999999999999999999999999


Q ss_pred             HHHHHhccchHH--------HHHHHHHHHhhhccchhh-HHHHHhhhccchhhhHHHHHHHHHHHHHHhHHHHhhhhhcC
Q 015847          125 FNTLFGLSVNFW--------MAVLTRFLLGSLNGLLGP-IKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQ  195 (399)
Q Consensus       125 ~~~~~~~~~~~~--------~l~~~r~l~G~~~~~~~~-~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~i~~~l~~  195 (399)
                      +.+++++++++.        .+++.|+++|++.+...+ ..+++.|++|+++|++..+..+.+..+|..+++.++..+..
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~~~~  157 (394)
T TIGR00883        78 GTLLIGLLPSYATIGIWAPILLLLARLIQGFSLGGEWGGAALYLAEYAPPGKRGFYGSFQQVGAPVGLLLAALTVLLLSY  157 (394)
T ss_pred             HHHHHhhCCChhhhHHHHHHHHHHHHHHHHhhccccccccHHHhhhcCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999988865        478899999999888766 49999999999999999999999999999999998877653


Q ss_pred             CCCCCCCcccccccccCCcchhhHHHHHHHHHHHHHHHHhcccCCCCCCCCCCccchhhhhhhhhhhhhhhccccCCccc
Q 015847          196 PAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPK  275 (399)
Q Consensus       196 ~~~~~~~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  275 (399)
                      .       .+.... ..++|+.++.+.++..++........||++++++++++                   +++...+.
T Consensus       158 ~-------~~~~~~-~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~~~  210 (394)
T TIGR00883       158 L-------LGDDAL-LEWGWRIPFLVSAVLVLIGLYLRRNLEETPVFEKAQEK-------------------HKKKRGPI  210 (394)
T ss_pred             h-------cCHHHh-hccchHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHhc-------------------cccccCCH
Confidence            1       110000 13456666676666655555444555665432211100                   00111233


Q ss_pred             ccccccch--hHHHHHHHHHHHhhhhhHHHHHHHhhcCCcccCccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 015847          276 KSLLKNWP--LMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGP  353 (399)
Q Consensus       276 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~  353 (399)
                      ++.+++++  ++......++..........++|.|..+.     +|.++.+.+.......++..++. ++.+++.||+++
T Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~g~~~~~~~~~~~~~~~~~~~~~-~~~g~l~dr~g~  284 (394)
T TIGR00883       211 RETLTKHRKPFLLGLGLVIATTTTFYLITTYLPTYLTQT-----LGLSANSALLVLMLSLILFFITI-PLSGALSDRIGR  284 (394)
T ss_pred             HHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----cCCChhHHHHHHHHHHHHHHHHH-HHHHHHHHHhch
Confidence            44455544  56656666666666666777888888655     78888999999999999999988 488999999999


Q ss_pred             hhHHHHHHHHH
Q 015847          354 IMVARIAGVLT  364 (399)
Q Consensus       354 ~~~~~~~~~~~  364 (399)
                      |+.+..+..+.
T Consensus       285 ~~~~~~~~~~~  295 (394)
T TIGR00883       285 RPVLIIFTVLA  295 (394)
T ss_pred             HHHHHHHHHHH
Confidence            98776554433

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.93  E-value=1.4e-23  Score=193.09  Aligned_cols=291  Identities=21%  Similarity=0.221  Sum_probs=207.7

Q ss_pred             HHHhccCccccchhhhhhHHHHHHHHHHHhhhhcccccccccCCchhhHHHHHHHHHHHHHHhc---cchHHHHHHHHHH
Q 015847           68 IKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGL---SVNFWMAVLTRFL  144 (399)
Q Consensus        68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~---~~~~~~l~~~r~l  144 (399)
                      .+++|.+.++++.....+.+.+++.+|.++|+++.|.++||+|||..+.++.++..++.+++.+   .+++..++++|++
T Consensus        46 ~~r~g~~~s~~~~~~lwS~~vs~f~iG~~~Gs~~~~~la~~~GRK~~l~~~~~l~~~~~~~~~~s~~~~~~e~li~GR~i  125 (485)
T KOG0569|consen   46 IERYGLPLSDSTLDLLWSLIVSIFFIGGMIGSFSSGLLADRFGRKNALLLSNLLAVLAALLMGLSKSAPSFEMLILGRLI  125 (485)
T ss_pred             HHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence            3567766666667777999999999999999999999999999999999999888887777665   5789999999999


Q ss_pred             HhhhccchhhH-HHHHhhhccchhhhHHHHHHHHHHHHHHhHHHHhhhhhcCCCCCCCCcccccccccCCcchhhHHHHH
Q 015847          145 LGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCIS  223 (399)
Q Consensus       145 ~G~~~~~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~i~~~l~~~~~~~~~~~gw~~~f~~~~~~~~~~~~~  223 (399)
                      .|+..|..... ..++.|..|.+.||..-.+.+.+..+|..++..++.--.         +|-     ...|.+.+....
T Consensus       126 ~Gl~~gl~~~~~pmyl~E~sP~~~RG~~g~~~~~~~~~g~ll~~~~~l~~i---------lGt-----~~~W~~l~~~~~  191 (485)
T KOG0569|consen  126 VGLACGLSTGLVPMYLTEISPKNLRGALGTLLQIGVVIGILLGQVLGLPSL---------LGT-----EDLWPYLLAFPL  191 (485)
T ss_pred             HHHHhHHHHHHHHHHHhhcChhhhccHHHHHHHHHHHHHHHHHHHHccHHh---------cCC-----CcchHHHHHHHH
Confidence            99998887774 999999999999999988889999999888866553221         110     223566667788


Q ss_pred             HHHHHHHHHHHhcccCCCCCCC-CCCccchhh--h----------hhhhhhhhhhhccc--cCCcccccccccchhHHHH
Q 015847          224 LFAFGVTIAAFWLPETLHRHND-DDDSCDVSY--D----------ALESASAEVKEEEG--REATPKKSLLKNWPLMSSI  288 (399)
Q Consensus       224 ~~~~~~~~~~~~~~e~~~~~~~-~~~~~~~~~--~----------~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~  288 (399)
                      +++++.++...++||+|++.-. +++++++.+  +          +.++..++.++++.  +...+.++++++|..+...
T Consensus       192 i~~~~~l~~l~~~PESPk~Ll~~k~~~~~A~~sl~~y~G~~~~~~~~e~~~~e~~~~~~~~~~~~sl~~~~~~~~lR~~~  271 (485)
T KOG0569|consen  192 IPALLQLALLPFLPESPKYLLIKKGDEEEARKALKFYRGKEDVEAEIEEMLREIEEEELEKKKQISLRQLLKNPTLRRPL  271 (485)
T ss_pred             HHHHHHHHHHhcCCCCcchHHHHcCCHHHHHHHHHHHhCCCcchhHHHHHHHHHHHhccccccCCcHHHHhcCcchhHHH
Confidence            8888888889999999997654 233222211  0          01111111111111  2445677888887776542


Q ss_pred             HHHH-HHHhhhhhHHHHHHHhhcCCcccCccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHH
Q 015847          289 IVYC-VFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPL  367 (399)
Q Consensus       289 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  367 (399)
                      ...+ +..............|..+  ...+.|++..++-+.....++...+.++ ++.++.||.|||++++.+..++.+.
T Consensus       272 ~i~~~v~~~qq~sGi~ai~~Yst~--i~~~aG~~~~~a~~an~~~g~v~~~~t~-~~~~lid~~gRRpLll~~~~~~~~~  348 (485)
T KOG0569|consen  272 LIGIVVSFAQQFSGINAIFFYSTS--IFKTAGFTPEEAQYANLGIGIVNLLSTL-VSPFLIDRLGRRPLLLISLSLMAVA  348 (485)
T ss_pred             HHHHHHHHHHHhcCcceeHHHHHH--HHHHcCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHhcCCcHHHHHHHHHHHHH
Confidence            2222 2222222222222222221  2222789999999999999999999994 9999999999999999999888887


Q ss_pred             HhHHhHHH
Q 015847          368 LTSYPYIA  375 (399)
Q Consensus       368 ~~~~~~~~  375 (399)
                      .+++....
T Consensus       349 ~~~~~~~~  356 (485)
T KOG0569|consen  349 LLLMSIAL  356 (485)
T ss_pred             HHHHHHHH
Confidence            77665443

>TIGR00901 2A0125 AmpG-related permease

Probab=99.92  E-value=3.9e-23  Score=190.05  Aligned_cols=278  Identities=12%  Similarity=0.202  Sum_probs=198.6

Q ss_pred             cccchhhhHHHHHHHhccCccccchhhhhhHHHHHHHHHHHhhhhccccccccc-----CCchh-hHHHHHHHHHHHHHH
Q 015847           56 PISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRY-----GRKPV-IIMGTASVVIFNTLF  129 (399)
Q Consensus        56 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~dr~-----Grr~~-l~~~~~~~~~~~~~~  129 (399)
                      ......+.+|.+.+|+|+|.++      .|+..+. .+...+ .+++|+++||+     ||||. ++.+.++.++.....
T Consensus         3 ~~~~~~~~~~~~~~~~g~s~~~------~g~~~~~-~~~~~~-~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l   74 (356)
T TIGR00901         3 PLGLVGNTLPYWLRSKNVSLKT------IGFFSLV-GLPYSL-KFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLIL   74 (356)
T ss_pred             CchhHHhHHHHHHHHcCCCHHH------HHHHHHH-HHHHHH-HHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHH
Confidence            3456778889999999999999      9998755 444444 89999999998     89887 466777777776666


Q ss_pred             hcc---chHHHHHHHHHHHhhhccchhhH-HHHHhhhccchhhhHHHHHHHHHHHHHHhHHHHhhhhhcCCCCCCCCccc
Q 015847          130 GLS---VNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFS  205 (399)
Q Consensus       130 ~~~---~~~~~l~~~r~l~G~~~~~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~i~~~l~~~~~~~~~~~g  205 (399)
                      ++.   .+.+.+....++.+++.+...+. .+++.|++|+|+|+++.++...+..+|..+++.+++.+.+       ..|
T Consensus        75 ~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~-------~~g  147 (356)
T TIGR00901        75 SFLVPSTDLPLLAGLAFLIAFFSATQDIALDAWRLEILSDEELGYGSTIYIVGYRAGMLLSGSLALVLAS-------PEF  147 (356)
T ss_pred             HcCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhchHHHHHHHHHHHHHHHHHHHHHHHhh-------hcc
Confidence            666   45666777777788777776665 9999999999999999999999999999999999999987       333


Q ss_pred             ccccccCCcchhhHHHHHHHHHHHHHHHHh-cccCCCCCCCCCCccchhhhhhhhhhhhhhhccccCCcccccccccch-
Q 015847          206 SESLFGKFPYFLPCLCISLFAFGVTIAAFW-LPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKNWP-  283 (399)
Q Consensus       206 w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~-~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  283 (399)
                      ... +.+++|+.++.+.++..++..+..++ .||+.++.+.+ +  +..        .       +.....++++++|. 
T Consensus       148 ~~~-~~~~~wr~~f~i~ai~~l~~~~~~~~~~~e~~~~~~~~-~--~~~--------~-------~~~~~~~~~~~~~~~  208 (356)
T TIGR00901       148 ANT-GLITLWGYIFFWTALLILPGLLVTLFLAKEPQEDASVP-K--PLT--------Q-------AVLKPIREFFQRKNM  208 (356)
T ss_pred             ccc-ccccccHHHHHHHHHHHHHHHHHHHHhccCCCcccccc-h--hHH--------H-------HHHHHHHHHHHhcCc
Confidence            222 12555777778887776665555443 46643211110 0  000        0       00112344556654 


Q ss_pred             --hHHHHHHHHHHHhhhhhHHHHHHHhhcCCcccCccccchhhHHHHHHHHHH-HHHHHHHHHHHHHHHHhcchhHHHHH
Q 015847          284 --LMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGF-SLLVFQLSLYPFLERILGPIMVARIA  360 (399)
Q Consensus       284 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~  360 (399)
                        ++...+..++..........++|.|+.+      +|+++.+.+.+....+. ..+++. ++++++.||+++|+.+..+
T Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~------~g~~~~~~g~~~~~~~~~~~~~g~-~~~g~l~~r~g~~~~l~~~  281 (356)
T TIGR00901       209 IQALLLLLLIVLYKLGDSAATVLTTLFLLD------MGFSKEEIALVAKINGLLGAILGG-LIGGIIMQPLNILYALLLF  281 (356)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------cCCCHHHHHHHhHHHHHHHHHHHH-HHHHHHHhhhhHHHHHHHH
Confidence              6666666666666667777888888765      68899999988887774 555666 5889999999999988888


Q ss_pred             HHHHHHHHhHHhHH
Q 015847          361 GVLTIPLLTSYPYI  374 (399)
Q Consensus       361 ~~~~~~~~~~~~~~  374 (399)
                      .++.++....+.+.
T Consensus       282 ~~~~~~~~~~~~~~  295 (356)
T TIGR00901       282 GIVQALTNAGFVWL  295 (356)
T ss_pred             HHHHHHHHHHHHHH
Confidence            87777666555443

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=99.92  E-value=1e-22  Score=190.28  Aligned_cols=276  Identities=14%  Similarity=0.210  Sum_probs=200.3

Q ss_pred             HHHHHHhhccccchhhhHHHHHHHhccCccccchhhhhhHHHHHHHHHHHhhhhccccccccc-----CCch-hhHHHHH
Q 015847           47 WIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRY-----GRKP-VIIMGTA  120 (399)
Q Consensus        47 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~dr~-----Grr~-~l~~~~~  120 (399)
                      ...++..+...+.....+|.+.++.|++.++      +|++..+...  .+..+++|+++||+     |||| .+.++.+
T Consensus         5 ~~l~~~~~~~~~~~~~~~~~~l~~~g~~~~~------ig~~~~~~~~--~~~~~l~g~~~Dr~~~~~~g~rr~~l~~~~~   76 (402)
T PRK11902          5 LLLGFASGLPLALTSGTLQAWMTVEGLDIQT------IGFFSLVGQA--YIFKFLWAPLMDRYTPPLLGRRRGWLLLTQV   76 (402)
T ss_pred             HHHHHHHhhhHHHHHHHHHHHHHHcCCCHHH------HHHHHHHHHH--HHHHHHHHHHHHcccccCCCcchhHHHHHHH
Confidence            3456677788888899999999999999999      9999777765  58899999999999     8875 6888888


Q ss_pred             HHHHHHHHHhcc---chHHHHHHHHHHHhhhccchhhH-HHHHhhhccchhhhHHHHHHHHHHHHHHhHHHHhhhhhcCC
Q 015847          121 SVVIFNTLFGLS---VNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQP  196 (399)
Q Consensus       121 ~~~~~~~~~~~~---~~~~~l~~~r~l~G~~~~~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~i~~~l~~~  196 (399)
                      +.+++....++.   ++++.+++..++.++..+...+. .+++.|++|+++|+++.++...+.++|..+++.+++.+.+ 
T Consensus        77 ~~~l~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~al~~~~~~~~~r~~~~~~~~~g~~~g~i~g~~l~~~l~~-  155 (402)
T PRK11902         77 GLAASIAAMAFCPPHAALWPLAGLAVLVAFLSASQDIVFDAYSTDVLHPEERGAGAAVKVLGYRLAMLVSGGLALWLAD-  155 (402)
T ss_pred             HHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhhHHHHHHHHHHHHHHHHHhHHHHHHHh-
Confidence            887777776665   35777777777788777777775 9999999999999999999999999999999999999886 


Q ss_pred             CCCCCCcccccccccCCcchhhHHHHHHHHHHHHHHHHhcccCCCCCCCCCCccchhhhhhhhhhhhhhhccccCCcccc
Q 015847          197 AEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKK  276 (399)
Q Consensus       197 ~~~~~~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  276 (399)
                            ..        ++|+..+.+.++..++..+..++.||++++++++++   ..        +       +.....+
T Consensus       156 ------~~--------~gw~~~f~i~a~~~l~~~l~~~~~~e~~~~~~~~~~---~~--------~-------~~~~~~~  203 (402)
T PRK11902        156 ------RV--------LGWGNTYLLMAGLMLAGALTTLWAPEPEVPARPPRS---LG--------E-------AVVGPLR  203 (402)
T ss_pred             ------cc--------cCHHHHHHHHHHHHHHHHHHHHhcCCCcccccccch---hH--------H-------HHHHHHH
Confidence                  21        244555577666666555555667775433211100   00        0       0112455


Q ss_pred             cccccchhHHHHHHHHHHHhhhhhHHHHHHHhhcCCcccCccccchhhHHHHHHHHHH-HHHHHHHHHHHHHHHHhcchh
Q 015847          277 SLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGF-SLLVFQLSLYPFLERILGPIM  355 (399)
Q Consensus       277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~  355 (399)
                      +++|+|.++...+..++..........+.+.++.+.     +|+++.+.+.+....+. +.+++. .+.+++.||+++|+
T Consensus       204 ~l~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~l~~~-----~G~~~~~~g~~~~~~~~~~~i~g~-~~~g~l~~r~g~~~  277 (402)
T PRK11902        204 DFFSRRGAWALLLLIVLYKLGDAFAGSLSTTFLIRG-----AGFSAGEVGIVNKTLGLAATIVGA-LAGGTLMVRLGLYR  277 (402)
T ss_pred             HHHhCcCHHHHHHHHHHHHhHHHHHHHHHHHHHHHh-----cCCCHHHHHHHHhHHHHHHHHHHH-HHHHHHHHHHhHHH
Confidence            678899888777766665554433333444444433     78899999998876654 466666 58899999999988


Q ss_pred             HHHHHHHHHHHHHh
Q 015847          356 VARIAGVLTIPLLT  369 (399)
Q Consensus       356 ~~~~~~~~~~~~~~  369 (399)
                      .+..+.....+..+
T Consensus       278 ~l~~~~~~~~l~~l  291 (402)
T PRK11902        278 SLMLFGVLQAVSNL  291 (402)
T ss_pred             HHHHHHHHHHHHHH
Confidence            87766666555443

>PRK11010 ampG muropeptide transporter; Validated

Probab=99.92  E-value=1.7e-22  Score=192.65  Aligned_cols=282  Identities=13%  Similarity=0.162  Sum_probs=202.8

Q ss_pred             hhHHHHHHHHHHHhhccccchhhhHHHHHHHhccCccccchhhhhhHHHHHHHHHHHhhhhccccccccc-----CCchh
Q 015847           40 ITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRY-----GRKPV  114 (399)
Q Consensus        40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~dr~-----Grr~~  114 (399)
                      +++...++...+..+.......+.+|.+.++.|.+..+      ++.. +...... ++.+++|+++||+     ||||.
T Consensus        11 ~~~~~~~~~l~~~~gl~~~~~~~~l~~~l~~~g~~~~~------ig~~-~~~~~~~-~~~~l~gpl~Dr~~~~~~Grrr~   82 (491)
T PRK11010         11 QPNSAILLILGFASGLPLALTSGTLQAWMTVENIDLKT------IGFF-SLVGQAY-VFKFLWSPLMDRYTPPFLGRRRG   82 (491)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHH------HHHH-HHHHHHH-HHHHHHHHHHHcccccCCCCchH
Confidence            34566666777778888888899999999999999988      8886 3333333 5889999999999     99885


Q ss_pred             -hHHHHHHHHHHHHHHhcc---chHHHHHHHHHHHhhhccchhhH-HHHHhhhccchhhhHHHHHHHHHHHHHHhHHHHh
Q 015847          115 -IIMGTASVVIFNTLFGLS---VNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPAL  189 (399)
Q Consensus       115 -l~~~~~~~~~~~~~~~~~---~~~~~l~~~r~l~G~~~~~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~i  189 (399)
                       +..+.+..+++...+++.   ++++.+.+.+++.+++.+...+. .++..|++|+++|+++.++...+..+|..+++.+
T Consensus        83 ~ll~~~i~~~~~~~~~a~~~~~~~l~~l~~~~~l~~~~~a~~~i~~~a~~~~~~~~~~rg~~~~i~~~g~~lG~llg~~l  162 (491)
T PRK11010         83 WLLATQLLLLVAIAAMGFLEPGTQLRWLAALAVVIAFCSASQDIVFDAWKTDVLPAEERGAGAAISVLGYRLAMLVSGGL  162 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHHHHHHHH
Confidence             667777777777666664   47888999999999987777664 9999999999999999999999999999999999


Q ss_pred             hhhhcCCCCCCCCcccccccccCCcchhhHHHHHHHHHHHHHHHHhcccCCCCCCCCCCccchhhhhhhhhhhhhhhccc
Q 015847          190 GGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEG  269 (399)
Q Consensus       190 ~~~l~~~~~~~~~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  269 (399)
                      ++++.+.      ..|         |+..+++.++..++..+..++.||++++.++++   +..               +
T Consensus       163 ~~~l~~~------~~G---------Wr~~f~i~a~l~ll~~l~~~~~~e~~~~~~~~~---~~~---------------~  209 (491)
T PRK11010        163 ALWLADR------YLG---------WQGMYWLMAALLIPCIIATLLAPEPTDTIPVPK---TLE---------------Q  209 (491)
T ss_pred             HHHHHhc------ccC---------HHHHHHHHHHHHHHHHHHHHhcCCCcccccccc---chh---------------h
Confidence            9999861      124         455557777776666655556777543211100   000               0


Q ss_pred             cCCcccccccccchhHHHHHHHHHHHhhhhhHHHHHHHhhcCCcccCccccchhhHHHHHH-HHHHHHHHHHHHHHHHHH
Q 015847          270 REATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLA-ITGFSLLVFQLSLYPFLE  348 (399)
Q Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~-~~~~~~~~~~~~~~~~l~  348 (399)
                      ....+.++.+++++.+...+..++..........+.+.|+.+.     +|+++.+.+.... ...++.+++. ++++++.
T Consensus       210 ~~~~~l~~~~~~~~~~~~ll~~~l~~~~~~~~~~~~~~~l~~~-----~G~s~~~~g~~~~~~g~i~~iiG~-ll~G~L~  283 (491)
T PRK11010        210 AVVAPLRDFFGRNNAWLILLLIVLYKLGDAFAMSLTTTFLIRG-----VGFDAGEVGLVNKTLGLLATIVGA-LYGGILM  283 (491)
T ss_pred             hHHHHHHHHHcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----cCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHH
Confidence            0011344566677766665555555555555566667676544     7899999999875 4456777777 5899999


Q ss_pred             HHhcchhHHHHHHHHHHHHH
Q 015847          349 RILGPIMVARIAGVLTIPLL  368 (399)
Q Consensus       349 ~~~~~~~~~~~~~~~~~~~~  368 (399)
                      ||+++++.+.++.++.++..
T Consensus       284 dr~g~~~~l~i~~~l~~l~~  303 (491)
T PRK11010        284 QRLSLFRALMIFGILQGVSN  303 (491)
T ss_pred             HHHhHHHHHHHHHHHHHHHH
Confidence            99999887776655544433

>PRK15011 sugar efflux transporter B; Provisional

Probab=99.92  E-value=4.6e-22  Score=185.20  Aligned_cols=273  Identities=15%  Similarity=0.205  Sum_probs=181.7

Q ss_pred             HHHHHHHHHhhccccchhhhHHH-HHHHhccCccccchhhhhhHHHHHHHH-HHHhhhhcccccccccCCchhh-HHHHH
Q 015847           44 FSIWIIVLCTALPISSLFPFLYF-MIKDFQIAKREEDIGSYAGYVGSSFMF-GRALTSVFWGLVADRYGRKPVI-IMGTA  120 (399)
Q Consensus        44 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~G~l~dr~Grr~~l-~~~~~  120 (399)
                      ....+..++.........|.+|. +.+++|.++.+      .|+..+...+ +..++.++.|+ +||+||||.+ ..+.+
T Consensus        18 ~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~s~~~------~g~~~~~~~~~~~~~~~~~~~~-~dr~g~r~~~~~~~~~   90 (393)
T PRK15011         18 TAFLIVAFLTGIAGALQTPTLSIFLTDEVHARPAM------VGFFFTGSAVIGILVSQFLAGR-SDKRGDRKSLIVFCCL   90 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHH------HHHHHHHHHHHHHHHHHHHHHH-HhcccchhHHHHHHHH
Confidence            34455577777777778888885 56889999999      9999876655 55555555555 9999999875 45566


Q ss_pred             HHHHHHHHHhccchHHHHHHHHHHHhhhccchhhH-HHHHhhhccchhh--hHHHHHHHHHHHHHHhHHHHhhhhhcCCC
Q 015847          121 SVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQ--ALGLSTVSTAWGIGLIIGPALGGFLAQPA  197 (399)
Q Consensus       121 ~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~-~~~~~~~~~~~~r--~~~~~~~~~~~~~g~~~~p~i~~~l~~~~  197 (399)
                      ..+++..+.+++++++.+++.+.+.|...+...|. .++..|+.++++|  +...+..+.+.++|..+||++++++.+  
T Consensus        91 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~i~~~l~~--  168 (393)
T PRK15011         91 LGVLACTLFAWNRNYFVLLFVGVFLSSFGSTANPQMFALAREHADKTGREAVMFSSFLRAQVSLAWVIGPPLAYALAM--  168 (393)
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHhhHHHHHHHH--
Confidence            66677777888899998876665555444455664 7788887776655  344578888999999999999999987  


Q ss_pred             CCCCCcccccccccCCcchhhHHHHHHHHHHHH-HHHHhcccCCCCCCCCCCccchhhhhhhhhhhhhhhccccCCcccc
Q 015847          198 EKYPNLFSSESLFGKFPYFLPCLCISLFAFGVT-IAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKK  276 (399)
Q Consensus       198 ~~~~~~~gw~~~f~~~~~~~~~~~~~~~~~~~~-~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  276 (399)
                           .+|||..|         ...++..++.. .....+||.+++++++++  + .                +   .. 
T Consensus       169 -----~~gw~~~f---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~----------------~---~~-  211 (393)
T PRK15011        169 -----GFSFTVMY---------LSAAVAFIVCGVMVWLFLPSMRKELPLATG--T-L----------------E---AP-  211 (393)
T ss_pred             -----hcChHHHH---------HHHHHHHHHHHHHHHhhcCccCCCCccccc--c-c----------------c---cc-
Confidence                 45555444         66666555543 345557776432211100  0 0                0   00 


Q ss_pred             ccccc-chhHHHHHHHHHHHhhhhhHHHHHHHhhcCCcccCccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchh
Q 015847          277 SLLKN-WPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIM  355 (399)
Q Consensus       277 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  355 (399)
                        .++ +..+...............+..++|.|+++.     +|+++.+++.+.+...++.+++. ++.+++.||+++|+
T Consensus       212 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~-----~~~~~~~~g~~~~~~~~~~i~~~-~~~G~l~dr~g~~~  283 (393)
T PRK15011        212 --RRNRRDTLLLFVICTLMWGTNSLYIINMPLFIINE-----LHLPEKLAGVMMGTAAGLEIPTM-LIAGYFAKRLGKRF  283 (393)
T ss_pred             --ccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----cCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhChHH
Confidence              011 2223333333333344445556788787665     78899999988887777777777 58899999999998


Q ss_pred             HHHHHHHHHHHHHhH
Q 015847          356 VARIAGVLTIPLLTS  370 (399)
Q Consensus       356 ~~~~~~~~~~~~~~~  370 (399)
                      .+..+.....+....
T Consensus       284 ~~~~~~~~~~~~~~~  298 (393)
T PRK15011        284 LMRVAAVAGVCFYAG  298 (393)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            877665555444433

>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]

Probab=99.91  E-value=4.1e-22  Score=174.95  Aligned_cols=303  Identities=17%  Similarity=0.163  Sum_probs=239.6

Q ss_pred             hhHHHHHHHHHHHhhccccchhhhHHHHHHHhccCccccchhhhhhHHHHHHHHHHHhhhhcccccccccCCchhhHHHH
Q 015847           40 ITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGT  119 (399)
Q Consensus        40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~  119 (399)
                      +..+..+....++.++......+.+|.+.+.++++..|      .+++..+++.++.+.+++.|++.+|+|+|+-++.|.
T Consensus        12 ~~~~v~~t~lFfl~G~~~~l~diLip~l~~~f~ls~~~------a~liqfaff~gYf~~~lpa~~~~kk~gyk~gi~lgL   85 (422)
T COG0738          12 KLAFVLLTSLFFLWGFITCLNDILIPHLKEVFDLTYFE------ASLIQFAFFGGYFIMSLPAGLLIKKLGYKAGIVLGL   85 (422)
T ss_pred             eeHHHHHHHHHHHHHHHhhcchhhHHHHHHHhCccHHH------HHHHHHHHHHHHHHHhccHHHHHHHhhhHHHHHHHH
Confidence            34556677778888888899999999999999999999      999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHh---ccchHHHHHHHHHHHhhhccchhhH-HHHHhhhccchhhhHHHHHHHHHHHHHHhHHHHhhhhhcC
Q 015847          120 ASVVIFNTLFG---LSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQ  195 (399)
Q Consensus       120 ~~~~~~~~~~~---~~~~~~~l~~~r~l~G~~~~~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~i~~~l~~  195 (399)
                      .++++++.++.   ...++..++++-++.|.|.+...+. .++++...++++..+.+++.+...++|.+++|++++.+..
T Consensus        86 ~l~avg~~lF~pAa~~~~y~~FL~~lFila~Gi~~LetaaNp~v~~lg~~~~a~~rlnl~q~fn~lGa~~gp~~g~~lil  165 (422)
T COG0738          86 LLYAVGAALFWPAASSKSYGFFLVALFILASGIGLLETAANPYVTLLGKPESAAFRLNLAQAFNGLGAILGPLLGSSLIL  165 (422)
T ss_pred             HHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhhhHHHHhccchHHHHhCCchhHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence            99999999884   5578889999999999999998885 9999999999999999999999999999999999999986


Q ss_pred             CCC----CCCCcccccccccCCcchhhHHHHHHHHHHHHHHHHhcc--cCCCCCCCCCCccchhhhhhhhhhhhhhhccc
Q 015847          196 PAE----KYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLP--ETLHRHNDDDDSCDVSYDALESASAEVKEEEG  269 (399)
Q Consensus       196 ~~~----~~~~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~--e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  269 (399)
                      +..    +-.....|+... --.++.++...+...++..+.....|  +.++..+++.+                     
T Consensus       166 s~~~~~~~~~~~~~~~~~~-~~~v~~pYl~~~~~lvll~v~~~~~k~p~~~~~~~~~~~---------------------  223 (422)
T COG0738         166 SGVALTMSAAQILAIKGAD-ASSVQFPYLILAGLLVLLAVLILLSKLPDLQVAAPSLGA---------------------  223 (422)
T ss_pred             hhhhhccCHHHHHHHHHHH-HHhhhhHHHHHHHHHHHHHHHHHhccCCcCCcccccccc---------------------
Confidence            210    000011233322 22255555666555544444433322  22211111110                     


Q ss_pred             cCCcccccccccchhHHHHHHHHHHHhhhhhHHHHHHHhhcCCcccCccccchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015847          270 REATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLER  349 (399)
Q Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~  349 (399)
                      .......+++++|.++...+..+++...+....++++.|+.+.     .|.+..+++...+..-.+.++++ +++.++.+
T Consensus       224 ~~~~~~~~l~~~~~~~~gvl~~FlYVG~Eva~gsfl~~y~~~~-----~g~~~~~aa~~~s~~~~~~~vGR-Fig~~lm~  297 (422)
T COG0738         224 SGSAGLSSLFQNKHLRLGVLAIFLYVGAEVAIGSFLVSYLEEL-----LGLNEQQAAYYLSFFWVGFMVGR-FIGSALMS  297 (422)
T ss_pred             cccchHHHHHhChHHHHHHHHHHHHHhHHHHHHHHHHHHHHhc-----CCccHHHHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence            0111456889999999999999999999999999999999887     78899999999999999999999 58888888


Q ss_pred             HhcchhHHHHHHHHHHHHHhHHhHHHH
Q 015847          350 ILGPIMVARIAGVLTIPLLTSYPYIAM  376 (399)
Q Consensus       350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~  376 (399)
                      |+...|.+....+...+.++...+.++
T Consensus       298 ~~~~~k~Laf~a~~~ill~~~~~l~~g  324 (422)
T COG0738         298 RIKPEKYLAFYALIAILLLLAVALIGG  324 (422)
T ss_pred             HhCHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            999999988877776666666655554

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=99.91  E-value=1.1e-22  Score=214.38  Aligned_cols=304  Identities=18%  Similarity=0.122  Sum_probs=209.9

Q ss_pred             hHHHHHHHHHHHhhcccc-chhhhHHHHHHHhccCccccchhhhhhHHHHHHHHHHHhhhhcccccccccCCchhhHHHH
Q 015847           41 TELFSIWIIVLCTALPIS-SLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGT  119 (399)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~  119 (399)
                      +.+...++..++..+... ......+.+..+++.+...    ...+++.+++.++..++++++|+++||+|||++++++.
T Consensus         9 ~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~l~~~l~~~~~G~l~Dr~grk~~l~~~~   84 (1146)
T PRK08633          9 IGFLPLLLTQFLNAFNDLGHKILIQNTLIKAYDGSEQV----ILTAIVNALFLLPFLLLSSPAGFLADKFSKNRVIRIVK   84 (1146)
T ss_pred             hhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcccHH----HHHHHHHHHHHHHHHHHhhhHhhhcccccHHHHHHHHH
Confidence            344444555555544443 3334445666666654332    22789999999999999999999999999999999988


Q ss_pred             HHHHHHHHHHh---ccchHHHHHHHHHHHhhhccchhhH-HHHHhhhccchhhhHHHHHHHHHHHHHHhHHHHhhhhhcC
Q 015847          120 ASVVIFNTLFG---LSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQ  195 (399)
Q Consensus       120 ~~~~~~~~~~~---~~~~~~~l~~~r~l~G~~~~~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~i~~~l~~  195 (399)
                      ++.++..++..   ..++++.+++.|+++|++.+...+. .+++.|++|+++|++++++...+..+|.++||.+++++.+
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~ig~~lg~~l~~~l~~  164 (1146)
T PRK08633         85 LFEVGLTLLIVLAYYLGWFWLAFAVTFLLGAQSAIYSPAKYGIIPELVGKENLSRANGLLEAFTIVAILAGTALFSFLFE  164 (1146)
T ss_pred             HHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHhhchHHHhhhHHhcCcccchhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            76665554433   4578999999999999999988886 9999999999999999999999999999999999999986


Q ss_pred             CCCCCCCcccc--cccccCCcchhhHHHHHHHHHHHHHHHHhcccCCCCCCCCCCccchhhhhhhhhhhhhhhccccCCc
Q 015847          196 PAEKYPNLFSS--ESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREAT  273 (399)
Q Consensus       196 ~~~~~~~~~gw--~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  273 (399)
                      .       +++  ...+ .+.++..++......++.++..+.+||.++....+.+..+..  .           ......
T Consensus       165 ~-------~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-----------~~~~~~  223 (1146)
T PRK08633        165 S-------VNGNTPSEI-LGRIAPAGLVLLAVAVLGLIFAYRLPKVPAAAPEVFDKKKYL--F-----------PKLLWR  223 (1146)
T ss_pred             h-------hcccccccc-ccchHHHHHHHHHHHHHHHHHHhcCcCCCCCCcccccccccc--c-----------HHHHHH
Confidence            2       000  0000 111222223333333344444556677654332211000000  0           000111


Q ss_pred             ccccccccchhHHHHHHHHHHHhhhhhHHHHHHHhhcCCcccCccccchh-hHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 015847          274 PKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQ-MVGEVLAITGFSLLVFQLSLYPFLERILG  352 (399)
Q Consensus       274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~g~~~~~~~~~~~~~~~~~~~~l~~~~~  352 (399)
                      ..+.+++++.++...+..++.......+..++|.|+.+.     +|++.. +.+++.+..+++.+++.. +.+++.||.+
T Consensus       224 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~g~s~~~~~g~~~~~~~ig~~~g~~-~~g~l~~r~~  297 (1146)
T PRK08633        224 NLKLLRSDRVLWLAIIGLSYFWFISQLAQANFPAYAKEV-----LGLDNTFQVQYLLAASAIGIGIGSL-LAGRLSGRHI  297 (1146)
T ss_pred             HHHHHhcCcHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH-----hCCCcHHHHHHHHHHHHHHHHHHHH-HHHHHhCCce
Confidence            345567888888777777766666666777888887765     788888 899999999999999884 8899999999


Q ss_pred             chhHHHHHHHHHHHHHhHHhHHH
Q 015847          353 PIMVARIAGVLTIPLLTSYPYIA  375 (399)
Q Consensus       353 ~~~~~~~~~~~~~~~~~~~~~~~  375 (399)
                      +++.+.++.++.+++++.+.+..
T Consensus       298 ~~~~~~~~~~~~~~~~~~~~~~~  320 (1146)
T PRK08633        298 ELGLVPLGALGLALSLFLLPTAP  320 (1146)
T ss_pred             EccchhHHHHHHHHHHHHHHHhh
Confidence            88888887777777666665444

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=99.91  E-value=2.7e-22  Score=190.01  Aligned_cols=296  Identities=21%  Similarity=0.239  Sum_probs=228.8

Q ss_pred             CChhHHHHHHHHHHHhhccccchhhhHHHHHHHhccCccccchhhhhhHHHHHHHHHHHhhhhcccccccccCCchhhHH
Q 015847           38 LPITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIM  117 (399)
Q Consensus        38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~dr~Grr~~l~~  117 (399)
                      .+.+.+..++.+.++..++..+....++-+..+..-|+..      .+++..+..+...+.++++|.++||++|||+++.
T Consensus         7 lr~~~Fr~lw~a~~iS~lG~~~~~va~~wlv~~lt~S~~~------valv~~a~~LP~~Llsl~aG~laDr~drrrili~   80 (524)
T PF05977_consen    7 LRNRNFRRLWIAQLISNLGDWMQTVALAWLVTQLTGSPLM------VALVQAASTLPILLLSLFAGALADRFDRRRILIL   80 (524)
T ss_pred             ccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHH------HHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHH
Confidence            3446677888899999999999998888888777777777      9999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhc-----cchHHHHHHHHHHHhhhccchhhH-HHHHhhhccchhhhHHHHHHHHHHHHHHhHHHHhhh
Q 015847          118 GTASVVIFNTLFGL-----SVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGG  191 (399)
Q Consensus       118 ~~~~~~~~~~~~~~-----~~~~~~l~~~r~l~G~~~~~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~i~~  191 (399)
                      +-++.++..+..++     ..+.+.+++.-++.|++.+...|+ .+++.|..|+++...++++.+...++...+||.++|
T Consensus        81 ~~~~~~~~~~~L~~l~~~~~~~~~~Ll~~~fl~g~~~a~~~PA~~A~ip~lV~~~~L~~A~al~s~~~niar~iGPalgG  160 (524)
T PF05977_consen   81 SQLLRALVALLLAVLAFFGLLSPWLLLILTFLLGIGSAFFNPAWQAIIPELVPKEDLPAANALNSISFNIARIIGPALGG  160 (524)
T ss_pred             HHHHHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHhccchHHH
Confidence            98877655544433     247888999999999999999997 999999999999999999999999999999999999


Q ss_pred             hhcCCCCCCCCcccccccccCCcchhhHHHHHHHHHHHHHHHHhcccCCCCCCCCCCccchhhhhhhhhhhhhhhccccC
Q 015847          192 FLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGRE  271 (399)
Q Consensus       192 ~l~~~~~~~~~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  271 (399)
                      .+..                ..+....+.+.++..++.+......+.+.++.+.++   +..              .+..
T Consensus       161 ~Lva----------------~~G~~~~f~inalsfl~~i~~l~~~~~~~~~~~~~~---e~~--------------~~~l  207 (524)
T PF05977_consen  161 ILVA----------------FFGAAAAFLINALSFLISILALLRWKPPPPPSSLPR---ERF--------------FSAL  207 (524)
T ss_pred             HHHH----------------HHHHHHHHHHHHHHHHHHHHHHHHccccccccccch---hhh--------------hhhH
Confidence            9987                233334446666555555544444443322111111   000              0011


Q ss_pred             CcccccccccchhHHHHHHHHHHHhhhhhHHHHHHHhhcCCcccCccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 015847          272 ATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERIL  351 (399)
Q Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~  351 (399)
                      ....+...++|.+...++..+++++....+...+|.+..+.     +|.++...|++.+..+++.+++.+ +.+++.+|+
T Consensus       208 ~~G~ryv~~~~~l~~~l~~~~~~~l~~~a~~aLlPl~a~~~-----l~~~a~~yGll~a~~gvGai~Gal-~~~~l~~~~  281 (524)
T PF05977_consen  208 REGLRYVRSSPPLRSVLLRSFLFNLFASAVWALLPLFARDV-----LGGGASGYGLLLAAFGVGAILGAL-LLPRLRRRL  281 (524)
T ss_pred             HHHHHHHhcchHHHHHHHHHHHHHHhhhHHHHhhhHHHHHH-----hCCcHHHHHHHHHHHHHHHHHHHH-HHHHhhccc
Confidence            12445566677777766666666766667777888887766     788999999999999999999995 788899999


Q ss_pred             cchhHHHHHHHHHHHHHhHHhHHHHHH
Q 015847          352 GPIMVARIAGVLTIPLLTSYPYIAMLS  378 (399)
Q Consensus       352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~  378 (399)
                      ++++.+..+.+..+++++.+++.++..
T Consensus       282 ~~~~lv~~~~~~~a~~~~~lal~~~~~  308 (524)
T PF05977_consen  282 SSRRLVLLASLLFALALLLLALSPSFW  308 (524)
T ss_pred             CcchhhHHHHHHHHHHHHHHhcchHHH
Confidence            998888888888888887777665543

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=99.90  E-value=5.3e-22  Score=185.10  Aligned_cols=290  Identities=13%  Similarity=0.145  Sum_probs=195.1

Q ss_pred             HHHHHHHHHHHhhccccchhhhHHHH-HHHhccCccccchhhhhhHHHHHHHHHHHhhhhcccccccccCCchhhHHHHH
Q 015847           42 ELFSIWIIVLCTALPISSLFPFLYFM-IKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTA  120 (399)
Q Consensus        42 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~  120 (399)
                      .++.+....++.........|.+|.+ .+++|.+..+      .|++.+++.++..+++++.|+++||+|||+.++.+..
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~------~g~~~~~~~l~~~i~~~~~G~l~Dr~grr~~~~~~~~   76 (396)
T TIGR00882         3 NFWMFGLFFFLYFFIMSAYFPFFPIWLHDVNGLSKTD------TGIVFSCISLFSILFQPLFGLISDKLGLKKHLLWIIS   76 (396)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHH
Confidence            34556666777777788888999865 4678999999      9999999999999999999999999999999988776


Q ss_pred             HHHHHHHHH---hccc-----hHHHHHHHHHHHhhhccchhhH-HHHHhhhccchhhhHHHHHHHHHHHHHHhHHHHhhh
Q 015847          121 SVVIFNTLF---GLSV-----NFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGG  191 (399)
Q Consensus       121 ~~~~~~~~~---~~~~-----~~~~l~~~r~l~G~~~~~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~i~~  191 (399)
                      ..+++....   .+.+     ....+++.+++.|++.+...+. ..+..|..  +++++.++......++|.++||.+++
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~--~~~~~~~g~~~~~~~~g~~~g~~~~g  154 (396)
T TIGR00882        77 GLLVLFAPFFIYVFGPLLQSNILVGAIVGGLYLGFVFSAGAGAIEAYIEKVS--RNSNFEYGKARMFGCVGWALCASIAG  154 (396)
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHhh--hhcccccchhhhhcccHHHHHHHHHh
Confidence            665544322   1121     2334566788888887776664 66666643  33456777888888999999999999


Q ss_pred             hhcCCCCCCCCcccccccccCCcchhhHHHHHHHHHHHHHHHHhc-ccCCCCCCCCCCccchhhhhhhhhhhhhhhcccc
Q 015847          192 FLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWL-PETLHRHNDDDDSCDVSYDALESASAEVKEEEGR  270 (399)
Q Consensus       192 ~l~~~~~~~~~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~-~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (399)
                      .+.+        .+         |+.++...+++.++..+..+.. ||+++++ ++++..+             .++++.
T Consensus       155 ~l~~--------~~---------~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-------------~~~~~~  203 (396)
T TIGR00882       155 ILFS--------ID---------PQIVFWLGSGFALILMLLLMFAKPKAPSSA-TVANALG-------------ANASAF  203 (396)
T ss_pred             hhhc--------cC---------chHHHHHHHHHHHHHHHHHHHhCCCCchhh-hhhcccc-------------cccCCC
Confidence            8864        23         4445566666666554444443 3332211 0000000             000111


Q ss_pred             CCcccccccccchhHHHHHHHHHHHhhhhhHHHHHHHhhcCCcccCccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015847          271 EATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERI  350 (399)
Q Consensus       271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~  350 (399)
                      +.++.++.+|||+++...+..+...........+++.|+.+....  .+.+....|...+...+...++. ...+++.||
T Consensus       204 ~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~y~~~~~~~--~~~~~~~~g~~~~~~~i~~~~~~-~~~g~l~~r  280 (396)
T TIGR00882       204 SLKLALELFRQRKFWMFVLYVVGVACVYDVFDQQFANFFTSFFAT--PQQGTRVFGYVTTMGELLNALIM-FCAPLIINR  280 (396)
T ss_pred             CHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--cccchHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence            122456778899887766665555554445555667776554211  24566678888888888888887 478999999


Q ss_pred             hcchhHHHHHHHHHHHHHhHHhH
Q 015847          351 LGPIMVARIAGVLTIPLLTSYPY  373 (399)
Q Consensus       351 ~~~~~~~~~~~~~~~~~~~~~~~  373 (399)
                      +++|+.+.++..+.++....+..
T Consensus       281 ~g~~~~l~~~~~l~~l~~~~~~~  303 (396)
T TIGR00882       281 IGAKNALLIAGTIMSVRIIGSSF  303 (396)
T ss_pred             hccchhHHHHHHHHHHHHHHHHh
Confidence            99999988888877776655443

>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]

Probab=99.90  E-value=6.8e-22  Score=189.90  Aligned_cols=297  Identities=15%  Similarity=0.117  Sum_probs=193.5

Q ss_pred             ccchhhhHHHHHHHhccCccccchh-hhhhHHHHHHHHHHHhhhhcccccccccCCchhhHHHHHHHHHHHHHHhccchH
Q 015847           57 ISSLFPFLYFMIKDFQIAKREEDIG-SYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNF  135 (399)
Q Consensus        57 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~  135 (399)
                      .....+....+.++...+....... ...+++.++..++..+++++.|+++|++|||+.++++.+.+.++.+++++++|+
T Consensus        63 ~g~~s~~~~~~~~~~~~~~~~~~~~~~~~s~~~s~~~lga~~g~l~~g~l~d~~GRk~~l~~~~~~~~iG~ii~~~a~~~  142 (513)
T KOG0254|consen   63 IGGISGALDFLQRFASLYDLSTGEYSVRQGLLTSILNLGALVGSLLAGRLGDRIGRKKTLLLAVVLFLIGAIIIALAPSW  142 (513)
T ss_pred             cccchhhHHHHHhcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhH
Confidence            4555666666655432222111100 115899999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhhccchhh-HHHHHhhhccchhhhHHHHHHHHHHHHHHhHHHHhhhhhcCCCCCCCCcccccccccCCc
Q 015847          136 WMAVLTRFLLGSLNGLLGP-IKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFP  214 (399)
Q Consensus       136 ~~l~~~r~l~G~~~~~~~~-~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~i~~~l~~~~~~~~~~~gw~~~f~~~~  214 (399)
                      ++++++|++.|+|.|.... +..+++|..|++.||...+..+....+|..++..++....+       .        .++
T Consensus       143 ~~l~~GR~l~G~g~G~~~~~~piy~sEiap~~~RG~l~~~~~l~~~~Gi~~~~~~~~~~~~-------~--------~~~  207 (513)
T KOG0254|consen  143 YQLIVGRILTGLGVGGASVLAPVYISEIAPAHIRGTLVSLYQLFITIGILLGYCINYGTSK-------V--------YAG  207 (513)
T ss_pred             HHHHHHHHHhccchhhhhhcchhhHhhcCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhcc-------C--------Ccc
Confidence            9999999999999888666 59999999999999999999999999999999655555543       0        035


Q ss_pred             chhhHHHHHHHHHHHHHHHHhcccCCCCCCCCCCccchh--hhhhhh------------hhhhh-hhccc-cCCcccccc
Q 015847          215 YFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVS--YDALES------------ASAEV-KEEEG-REATPKKSL  278 (399)
Q Consensus       215 ~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~--~~~~~~------------~~~~~-~~~~~-~~~~~~~~~  278 (399)
                      ||.++.+..+.+++..+..+++||+|++..++.+..+..  ...+..            .+.+. .+... .....+.++
T Consensus       208 Wr~~~~~~~i~~~~~~~~~~~~pesp~~L~~~g~~~~a~~~l~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  287 (513)
T KOG0254|consen  208 WRIPLGLALIPAVILALGMLFLPESPRWLIEKGRLEEAKRSLKRLRGLSPEDVEVELELLKIKLLVEAEVAEGKASWGEL  287 (513)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCChHHHHHcCChHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhhhcccccccHHHh
Confidence            666778888888887777888999998765433222211  111110            00000 00000 011112333


Q ss_pred             cccchhHHHHHHHHHHHhhhhh----HHHHHHHhhcCCcccCccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcch
Q 015847          279 LKNWPLMSSIIVYCVFSLHDMA----YSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPI  354 (399)
Q Consensus       279 ~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~  354 (399)
                      ++........+...+..+++..    ...+.+...+.      .|.+... .......++..+++.. ++..+.||.|||
T Consensus       288 ~~~~~~~~~~i~~~l~~fqq~tG~~~~~~Y~~~if~~------~g~~~~~-~~~~~~~~~v~~~~t~-~~~~lvd~~gRr  359 (513)
T KOG0254|consen  288 FSPKVRKRLIIGLLLQLFQQLTGINYVFYYSTTIFKS------AGLKSDT-FLASIILGVVNFLGTL-VATYLVDRFGRR  359 (513)
T ss_pred             cCcchHHHHHHHHHHHHHHHHhCCceEEeehHHHHHh------cCCCCch-HHHHHHHHHHHHHHHH-HHHHHHHHhccH
Confidence            3321222222233333333222    22222322222      3444332 3334444555555553 668899999999


Q ss_pred             hHHHHHHHHHHHHHhHHhHHHH
Q 015847          355 MVARIAGVLTIPLLTSYPYIAM  376 (399)
Q Consensus       355 ~~~~~~~~~~~~~~~~~~~~~~  376 (399)
                      +.++.+...+.++.++++....
T Consensus       360 ~lll~s~~~m~~~~~~~~~~~~  381 (513)
T KOG0254|consen  360 KLLLFGAAGMSICLVILAVVGV  381 (513)
T ss_pred             HHHHHhHHHHHHHHHHHHHHHH
Confidence            9999999999988887765543

>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]

Probab=99.90  E-value=1.5e-21  Score=184.11  Aligned_cols=321  Identities=17%  Similarity=0.165  Sum_probs=230.5

Q ss_pred             CChhHHHHHHHHHHHhhccccchhhhHHHHHHHhccCccccchhhhhhHHHHHHHHHHHhhhhcccccccccCCchhhHH
Q 015847           38 LPITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIM  117 (399)
Q Consensus        38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~dr~Grr~~l~~  117 (399)
                      +.|-..+...+..............+.+.++++++.+..+      ++|+.++......+..|+.+.+.||+|.|.+.+.
T Consensus        43 ~gWvV~~a~fl~~~~~~g~~~~~Gv~~~~~~~~f~~s~~~------~~~i~sl~~~~~~~~gpl~s~l~~rfg~R~v~i~  116 (509)
T KOG2504|consen   43 WGWVVVFASFLVNLSTDGLINSFGLLFEELMDYFGSSSSQ------IAWIGSLLLGVYLLAGPLVSALCNRFGCRTVMIA  116 (509)
T ss_pred             eeeeeeHhHHHHHHhhhcchheehhhHHHHHHHhCCCccH------HHHHHHHHHHHHHHhccHHHHHHhhcCchHHHHH
Confidence            3444444444444444444555567788999999999999      9999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhccchHHHHHHHH-HHHhhhccchhh-HHHHHhhhccchhhhHHHHHHHHHHHHHHhHHHHhhhhhcC
Q 015847          118 GTASVVIFNTLFGLSVNFWMAVLTR-FLLGSLNGLLGP-IKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQ  195 (399)
Q Consensus       118 ~~~~~~~~~~~~~~~~~~~~l~~~r-~l~G~~~~~~~~-~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~i~~~l~~  195 (399)
                      |.++..++.++.+++++.|++++.. ++.|+|.|+... ...++..+| +|+|+.+.|+...+.++|..+-|.+..++.+
T Consensus       117 G~~v~~~g~~lssF~~~i~~l~lt~gvi~G~G~~~~~~paiviv~~YF-~kkR~lA~Gia~~GsG~G~~~~~~l~~~l~~  195 (509)
T KOG2504|consen  117 GGLVAALGLLLSSFATSLWQLYLTFGVIGGLGLGLIYLPAVVILGTYF-EKKRALATGIAVSGTGVGTVVFPPLLKYLLS  195 (509)
T ss_pred             HHHHHHHHHHHHHHHhhHHHHHHHHHHHhhccchhhhcchhhhhhhHh-HHHHHHHHhhhhccCCcceeeHHHHHHHHHH
Confidence            9999999999999999999998877 888999888554 577777555 5889999999999999999999999999998


Q ss_pred             CCCCCCCcccccccccCCcchhhHHHHHHHHHHHHHHHHhccc-CCCCCCCC--------------C-----Cc---cch
Q 015847          196 PAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPE-TLHRHNDD--------------D-----DS---CDV  252 (399)
Q Consensus       196 ~~~~~~~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~e-~~~~~~~~--------------~-----~~---~~~  252 (399)
                                      +++|+...++.+.+.+-.++....+++ +++..+.+              .     +.   ...
T Consensus       196 ----------------~~G~r~~~l~~~~~~l~~~~~~~~~rp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  259 (509)
T KOG2504|consen  196 ----------------KYGWRGALLIFGGISLNVLVAGALLRPLSPPKKPNEEKDLRNSAASVESTPKPVELRISERDSG  259 (509)
T ss_pred             ----------------HhCcHHHHHHHHHHHHHHHHHHHHcCCCCcCCCchhhhhhccccccccccccccccccccCCCC
Confidence                            444454446666666655555444433 22211110              0     00   000


Q ss_pred             hhh----hhhhhhhhhhhcc-ccCCc----ccccccccchhHHHHHHHHHHHhhhhhHHHHHHHhhcCCcccCccccchh
Q 015847          253 SYD----ALESASAEVKEEE-GREAT----PKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQ  323 (399)
Q Consensus       253 ~~~----~~~~~~~~~~~~~-~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  323 (399)
                      ...    ..+...+..++.+ .....    -..+++++|.++...+...+..........++|.|..+      .+++..
T Consensus       260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ll~~~~fl~~~~~~~~~~~g~~~p~~~l~~~~~~------~g~~~~  333 (509)
T KOG2504|consen  260 LKKLSLSNLATLKRGPDKWRNSPLQAFLSMLDLSLLKDPKFLLLALSNLFAYLGFNVPFVYLPSYAKS------LGLSSN  333 (509)
T ss_pred             CCcccccchhhhhhCCccccccchhhhhhhhhHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHhh------cCCChh
Confidence            000    0000000000000 01111    13578999999999999999999999999999988885      799999


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHhc--chhHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHH
Q 015847          324 MVGEVLAITGFSLLVFQLSLYPFLERILG--PIMVARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNC  388 (399)
Q Consensus       324 ~~g~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  388 (399)
                      +++.+++..++..+++++ +.|++.|+..  ++.+..++.+..+++....++.+.......+.+++.
T Consensus       334 ~aa~l~Siigi~~i~gRi-~~G~laD~~~~~~~~~~~~~ll~~gl~~~~~p~~~~~~~l~~~~~~fG  399 (509)
T KOG2504|consen  334 DAAFLLSIIGVSDIIGRI-ILGLLADKPGIRALVLFLLTLLIAGLARLFLPFATTYVGLIVFSILFG  399 (509)
T ss_pred             hhHHHHHHHHHhhhhhhh-hhhhhcCccccchHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence            999999999999999995 8999999876  444555666666777666666666545444444433

>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins

Probab=99.90  E-value=2.2e-21  Score=183.24  Aligned_cols=293  Identities=13%  Similarity=0.154  Sum_probs=197.0

Q ss_pred             HHhhccccchhhhHHHHHHHhccCccccchhhhhhHHHHHHHHHHHhhhhcccccccccCCchhhHHHHHHHHHHHHHHh
Q 015847           51 LCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFG  130 (399)
Q Consensus        51 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~  130 (399)
                      ....+........++.+.+++|-++.       ..|+.+...++..++.++.|+++|.+|||+.++.+.++..++.+.++
T Consensus        54 ~~~~~~~~~~a~~l~~I~~diG~~~~-------~~w~~~~~~l~~av~~~~~G~LSDlfGRr~~~i~g~~l~vvG~Iv~a  126 (599)
T PF06609_consen   54 IAAYFVLVLPASILPYINADIGGSDN-------WSWFSTAWTLASAVSFPFVGRLSDLFGRRYFFIIGSLLGVVGSIVCA  126 (599)
T ss_pred             HHHHHHHhccHHHHHHHHHhcCCCcc-------chHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHhHHHHhh
Confidence            33444555566778899999988654       78999999999999999999999999999999999999999999999


Q ss_pred             ccchHHHHHHHHHHHhhhccchhhHHHHHhhhccchhhhHHHHHHHHHHHHHHhHHHHhhhhhcCCCCCCCCcccccccc
Q 015847          131 LSVNFWMAVLTRFLLGSLNGLLGPIKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLF  210 (399)
Q Consensus       131 ~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~i~~~l~~~~~~~~~~~gw~~~f  210 (399)
                      -++|...++.+..+.|+|.|........++|..|.|.|+...++......+....+|.++..+..       ..+|||.|
T Consensus       127 tA~~~~~~iag~~l~GvgaG~~~~~~~~isEl~p~k~R~~~~~~~~~~~i~~~~~~~~ia~~~~~-------~~~WRw~~  199 (599)
T PF06609_consen  127 TAQNMNTFIAGMVLYGVGAGVQELAALAISELVPNKWRGLGLAIASIPFIITTWISPLIAQLFAA-------HSGWRWIF  199 (599)
T ss_pred             cCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhcccchhhhHhHHHHHHHHhhhcccHHHHHHhcc-------CCCcchHH
Confidence            99999999999999999987776667779999999999888877776666666678888877765       45677666


Q ss_pred             cCCcchhhHHHHHHHHHHHHHH--HHhcccCCCCCCCCCCccchhhhhhhh-------------------------hhhh
Q 015847          211 GKFPYFLPCLCISLFAFGVTIA--AFWLPETLHRHNDDDDSCDVSYDALES-------------------------ASAE  263 (399)
Q Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~e~~~~~~~~~~~~~~~~~~~~~-------------------------~~~~  263 (399)
                               ++.++...+.++.  .+..|++.+..+.++...++...++|.                         .++.
T Consensus       200 ---------~~~~i~~~i~~vl~~~fY~PP~~~~~~~~~~s~~~~l~~lD~IG~~L~~~Gl~LfLlgl~wgG~~~~~W~S  270 (599)
T PF06609_consen  200 ---------YIFIIWSGIALVLIFFFYFPPPRAQLHGRKLSKREQLKELDWIGIFLFIAGLALFLLGLSWGGYPYYPWKS  270 (599)
T ss_pred             ---------HHHHHHHHHHHHHHHHHhCCCchhhhccccCcHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCCCCCCC
Confidence                     4444433333222  233343322211111111111111111                         0000


Q ss_pred             h------------------hhcc--ccCCcccccccccc-hhHHHHHHHHHHHhhhhhHHHHHHHhhcCCcccCccccch
Q 015847          264 V------------------KEEE--GREATPKKSLLKNW-PLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYST  322 (399)
Q Consensus       264 ~------------------~~~~--~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  322 (399)
                      .                  .|..  .+.+.-..+++|++ .+...++..++....+++...++|......     ++-++
T Consensus       271 a~VIa~lviG~~~Lv~F~~wE~~~~~~~Pl~P~~Lf~~~r~~~~~lvi~fi~G~~~~s~~~l~p~~~~~v-----f~~d~  345 (599)
T PF06609_consen  271 AHVIAPLVIGFVLLVAFVVWEWFGAPKDPLFPHRLFKDRRGFAALLVISFISGMNFFSVNILWPQQVVNV-----FGSDP  345 (599)
T ss_pred             ccchhhHHHHHHHHHHHHHhhhhccCCCCcCCHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-----ccCCC
Confidence            0                  0211  23455667888884 455556666677667777777788766554     33333


Q ss_pred             ---hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcch-hHHHHHHHHHHHHHhHHh
Q 015847          323 ---QMVGEVLAITGFSLLVFQLSLYPFLERILGPI-MVARIAGVLTIPLLTSYP  372 (399)
Q Consensus       323 ---~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~  372 (399)
                         ...++.....+++..++.. +.+.+.+++++. +.++++.+++.+++..+.
T Consensus       346 ~~~~~~~~~s~~~~fg~~~g~~-i~g~l~~~ir~~Kw~li~~~~~~ta~~Gama  398 (599)
T PF06609_consen  346 ISITEIGWISSPVGFGSCAGAV-ILGLLFSKIRHIKWQLIFGSVLMTAFCGAMA  398 (599)
T ss_pred             cccceeehhhhhHHHHHHHHHH-HHHHHHHHccchhHHHHHHHHHHHHHHHHHH
Confidence               2467777788888888774 667777777654 444566666555544443

Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=99.90  E-value=6.9e-22  Score=207.79  Aligned_cols=249  Identities=16%  Similarity=0.121  Sum_probs=184.3

Q ss_pred             hhHHHHHHHHHHHhhhhcccccccccCCchhhHH---HHHHHHHHHHHHhccchHHHHHHHHHHHhhhccchhhH-HHHH
Q 015847           84 AGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIM---GTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYA  159 (399)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~G~l~dr~Grr~~l~~---~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~-~~~~  159 (399)
                      .++..+++.+.+.++++++|+++||+|||+++..   ..+..++..+.....++++.++++|+++|++.+...|+ .+++
T Consensus        54 ~~l~~~~~~l~~~l~~~~~G~laDr~~rk~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~l~gi~~a~~~p~~~a~l  133 (1140)
T PRK06814         54 VTLAGAVFILPFFIFSALAGQLADKYDKAKLAKILKFAEIGIAALAIYGFHLNSVPLLFAALFLMGIHSALFGPIKYSIL  133 (1140)
T ss_pred             HHHHHHHHHHHHHHHhhhHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhchHHHHhh
Confidence            7888999999999999999999999999997633   22222222233334589999999999999999998886 9999


Q ss_pred             hhhccchhhhHHHHHHHHHHHHHHhHHHHhhhhhcCCCCCCCCcccccccccCCcchhhHHHHHHHHHHHHHHHHhcccC
Q 015847          160 CEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPET  239 (399)
Q Consensus       160 ~~~~~~~~r~~~~~~~~~~~~~g~~~~p~i~~~l~~~~~~~~~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~e~  239 (399)
                      .|++|+++|++++|+.+++.++|.++||+++|++.+       ..||         +..++..++..++.++..+++|++
T Consensus       134 ~~~~~~~~~~~a~~~~~~~~~ig~~igp~l~g~l~~-------~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~  197 (1140)
T PRK06814        134 PDHLNKDELLGANALVEAGTFIAILLGTIIGGLATI-------SGNF---------VILVALLMGIAVLGWLASLFIPKT  197 (1140)
T ss_pred             HhhcCccccchhhHHHHHHHHHHHHHHHHHHHHHHh-------cccc---------HHHHHHHHHHHHHHHHHHhhCCCC
Confidence            999999999999999999999999999999999987       3444         444445555555555556667765


Q ss_pred             CCCCCCCCCccchhhhhhhhhhhhhhhccccCCcccccccccchhHHHHHHHHHHHhhhhhHHHHHHHhhcCCcccCccc
Q 015847          240 LHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLN  319 (399)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  319 (399)
                      ++.....+......               ......++.+.+++.++...+..++..+....+..++|.|+.+.     +|
T Consensus       198 ~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~-----~g  257 (1140)
T PRK06814        198 GNAAPDLKIDRNII---------------RSTITLLKYAKADKRIWLAILGISWFWLVGAVVLSQLPLLAKET-----LG  257 (1140)
T ss_pred             CCCCCCCeeccchH---------------HHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-----cC
Confidence            43222111100000               00011455677889999888888887777778888899998776     78


Q ss_pred             cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHh
Q 015847          320 YSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLT  369 (399)
Q Consensus       320 ~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  369 (399)
                      .++.+.|.+++..+++.+++.. +.+++.++..+++.+..+.++.+++.+
T Consensus       258 ~~~~~~g~~~~~~~~g~~ig~~-~~g~l~~~~~~~~~~~~~~~~~~~~~~  306 (1140)
T PRK06814        258 GDENVATLFLAVFSVGVAVGSF-LASKLSEGRITLLYVPIGALLMGLFGL  306 (1140)
T ss_pred             CchHHHHHHHHHHHHHHHHHHH-HHHHHhCCceeeeeehHHHHHHHHHHH
Confidence            8999999999999999999985 788888776666655555444444333

>PRK09528 lacY galactoside permease; Reviewed

Probab=99.89  E-value=1.4e-21  Score=183.80  Aligned_cols=294  Identities=13%  Similarity=0.101  Sum_probs=183.6

Q ss_pred             HHHHHHHHHHHhhccccchhhhHHHHH-HHhccCccccchhhhhhHHHHHHHHHHHhhhhcccccccccCCchhhHHHHH
Q 015847           42 ELFSIWIIVLCTALPISSLFPFLYFMI-KDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTA  120 (399)
Q Consensus        42 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~  120 (399)
                      .++.+....++.....+...+++|.+. +++|.+..+      .|++.+++.++..+++++.|+++||+|||++++++..
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~------~g~~~s~~~l~~~i~~~~~G~l~Dr~g~r~~~~~~~~   84 (420)
T PRK09528         11 NYWIFSLFFFFFFFIWSSWFSFFPIWLHDINGLSGTD------TGIIFSANSLFALLFQPLYGLISDKLGLKKHLLWIIS   84 (420)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHH
Confidence            445555566666666677788888554 559999999      9999999999999999999999999999999988766


Q ss_pred             HHHHHHHHHh---ccc-----hHHHHHHHHHHHhhhccchhhH-HHHHhhhccchhhhHHHHHHHHHHHHHHhHHHHhhh
Q 015847          121 SVVIFNTLFG---LSV-----NFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGG  191 (399)
Q Consensus       121 ~~~~~~~~~~---~~~-----~~~~l~~~r~l~G~~~~~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~i~~  191 (399)
                      +.++......   ..+     .....++.+++.|.+.....+. ..+. |.. ++++++.+|......++|..++|.+++
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~g~~~g~~~~~~~~g~~i~~~~~g  162 (420)
T PRK09528         85 GLLVLFGPFFIYVFAPLLQYNILLGAIVGGIYLGFGFLAGAGAIEAYI-ERV-SRRSGFEYGRARMWGSLGWALCAFIAG  162 (420)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccchhhhhhHH-HHH-HhhccccchhhHHhhhHHHHHHHHHHH
Confidence            6554433211   111     1111222233333332222222 2222 222 345677888888999999999999999


Q ss_pred             hhcCCCCCCCCcccccccccCCcchhhHHHHHHHHHHHHHHHHhcccCCCCCCCCCCccchhhhhhhhhhhhhhhccccC
Q 015847          192 FLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGRE  271 (399)
Q Consensus       192 ~l~~~~~~~~~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  271 (399)
                      .+.+        .+|         +.+++..++..++..+..+..+++++++.+++++.+.             +++...
T Consensus       163 ~l~~--------~~~---------~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~  212 (420)
T PRK09528        163 ILFN--------INP---------QINFWLGSGSALILLVLLFFAKPDAPSTAKVANALGA-------------NASAVS  212 (420)
T ss_pred             HHHh--------cCc---------hHhHHHHHHHHHHHHHHHhcccccccchhhhccchhc-------------cccccc
Confidence            9975        233         3444666666655555544443332221110000000             000001


Q ss_pred             CcccccccccchhHHHHHHHHHHHhhhhhHHHHHHHhhcCCcccCccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 015847          272 ATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERIL  351 (399)
Q Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~  351 (399)
                      .++.++.+|+|.++...+..+............+|.|..+....  .+.+..+.|.+.+...+...++. +..+++.||+
T Consensus       213 ~~~~~~~l~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~~~~~~~-~~~g~l~dr~  289 (420)
T PRK09528        213 LKDALALLKLPKFWFLVLYVIGVACFYDVFDQQFPNFFASFFAT--PEQGTRVFGYLNSFQVFLEALIM-FFAPFIINRI  289 (420)
T ss_pred             HHHHHHHccCCCeEeehHHHHHHHHHHHHHHHHHHHHHHHHHhc--cCcchHHHHHHHHHHHHHHHHHH-HHHHHHHHHh
Confidence            12334567788776655544444444444445566665543111  35567788999999888888887 4889999999


Q ss_pred             cchhHHHHHHHHHHHHHhHHhHHHH
Q 015847          352 GPIMVARIAGVLTIPLLTSYPYIAM  376 (399)
Q Consensus       352 ~~~~~~~~~~~~~~~~~~~~~~~~~  376 (399)
                      ++|+.+..+.++..+...++.+.++
T Consensus       290 g~~~~~~~~~~l~~~~~~l~~~~~~  314 (420)
T PRK09528        290 GAKNALLLAGTIMAVRIIGSGFATG  314 (420)
T ss_pred             CcchhhHHHHHHHHHHHHHHHhccc
Confidence            9999988888887777766655443

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=99.88  E-value=1.9e-20  Score=177.72  Aligned_cols=158  Identities=17%  Similarity=0.180  Sum_probs=134.1

Q ss_pred             hhHHHHHHHHHHHhhccccchhhhHH-HHHHHhccCccccchhhhhhHHHHHHHHHHHhhhhcccccccc-cCCchhhHH
Q 015847           40 ITELFSIWIIVLCTALPISSLFPFLY-FMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADR-YGRKPVIIM  117 (399)
Q Consensus        40 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~dr-~Grr~~l~~  117 (399)
                      ++.++.++...+...+..+...+.++ ++.+++|.+..+      .+++.+.+.....+..++.|+++|| +||||++++
T Consensus        13 p~~~~~~~~~~~~er~~~y~~~~~l~~yl~~~lg~~~~~------a~~i~~~~~~~~~~~~~~~G~laDr~~G~r~~~~~   86 (489)
T PRK10207         13 PRPFFMIFFVELWERFGYYGVQGILAVFFVKQLGFSQEQ------AFITFGAFAALVYGLISIGGYVGDHLLGTKRTIVL   86 (489)
T ss_pred             ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHH------HHHHHHHHHHHHHHHHhhHHHhhhhccchHHHHHH
Confidence            35666677777777787777777766 556789999988      9999999998888889999999999 999999999


Q ss_pred             HHHHHHHHHHHHhccchHHH-HHHHHHHHhhhccchhhH-HHHHhhhccch--hhhHHHHHHHHHHHHHHhHHHHhhhhh
Q 015847          118 GTASVVIFNTLFGLSVNFWM-AVLTRFLLGSLNGLLGPI-KAYACEIFREE--HQALGLSTVSTAWGIGLIIGPALGGFL  193 (399)
Q Consensus       118 ~~~~~~~~~~~~~~~~~~~~-l~~~r~l~G~~~~~~~~~-~~~~~~~~~~~--~r~~~~~~~~~~~~~g~~~~p~i~~~l  193 (399)
                      +.+++.++.+.++++.+... ++++|+++|++.|...|. .+++.|.+|++  +|.+++++++.+.++|..+||.+++++
T Consensus        87 g~~~~~~g~~~~~~~~~~~~ll~~~~~l~~ig~g~~~~~~~~li~~~~p~~~~~~~~~~~~~~~~~nig~~~g~~l~g~l  166 (489)
T PRK10207         87 GAIVLAIGYFMTGMSLLKPDLIFIALGTIAVGNGLFKANPASLLSKCYPPKDPRLDGAFTLFYMSINIGSLISLSLAPVI  166 (489)
T ss_pred             HHHHHHHHHHHHHHhccchhHHHHHHHHHHhccccccCCHHHHHHHhcCCCchhhhcchhHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999998876444 558899999999988774 99999999877  457899999999999999999999999


Q ss_pred             cCCCCCCCCcccccccc
Q 015847          194 AQPAEKYPNLFSSESLF  210 (399)
Q Consensus       194 ~~~~~~~~~~~gw~~~f  210 (399)
                      .+       ..|||+.|
T Consensus       167 ~~-------~~gw~~~F  176 (489)
T PRK10207        167 AD-------KFGYSVTY  176 (489)
T ss_pred             HH-------hhChHHHH
Confidence            98       45665554

>TIGR00889 2A0110 nucleoside transporter

Probab=99.88  E-value=1.6e-20  Score=175.79  Aligned_cols=281  Identities=12%  Similarity=0.042  Sum_probs=189.8

Q ss_pred             HHHHHHHhhccccchhhhHH-HHHHHhccCccccchhhhhhHHHHHHHHHHHhhhhcccccccccCC-chhhHHHHHHHH
Q 015847           46 IWIIVLCTALPISSLFPFLY-FMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGR-KPVIIMGTASVV  123 (399)
Q Consensus        46 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~dr~Gr-r~~l~~~~~~~~  123 (399)
                      +....++.+.......|.++ .+.+++|.+..+      +|++.+++.++..++++++|+++||+|| |+++.++.++..
T Consensus         7 ~~~~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~------iGl~~a~~~~~~~i~~~~~g~l~dr~g~~r~~~~~~~~~~~   80 (418)
T TIGR00889         7 LKFMSFLQWFIWGSWLVTLGSYMSKTLHFSGAE------IGWVYSSTGIAAILMPILVGIIADKWLSAQKVYAVCHFAGA   80 (418)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence            45556666777777766665 556779999999      9999999999999999999999999965 778888888888


Q ss_pred             HHHHHHhccchHHHHHHHHHHHhhhccchhhH-HHHH----h----hhccchhhhHHHHHHHHHHHHHHhHHHHhhhhhc
Q 015847          124 IFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYA----C----EIFREEHQALGLSTVSTAWGIGLIIGPALGGFLA  194 (399)
Q Consensus       124 ~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~-~~~~----~----~~~~~~~r~~~~~~~~~~~~~g~~~~p~i~~~l~  194 (399)
                      ++.....+.++++.+++.|++.|++.+...+. .++.    .    |......|.+.+|      .+|.++||.+++.+.
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~~r~~G------~lG~~ig~~l~g~l~  154 (418)
T TIGR00889        81 LLLFFAAQVTTPAGMFPVLLANSLAYMPTIALTNSISYANLPQAGLDVVTDFPPIRVMG------TIGFIAAMWAVSLLD  154 (418)
T ss_pred             HHHHHHHHhcCHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhhcCCCchhcCCCeeeeh------hHHHHHHHHHHHHhc
Confidence            88888888899999999999999976655442 3332    2    2233334444444      478888899988874


Q ss_pred             CCCCCCCCcccccccccCCcchhhHHHHHHHHHHHHHHHHhcccCCCCCCCCCCccchhhhhhhhhhhhhhhccccCCcc
Q 015847          195 QPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATP  274 (399)
Q Consensus       195 ~~~~~~~~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  274 (399)
                      .                ...| .+++..++..++..+..+.+||+++.+++++.  +..               +.....
T Consensus       155 ~----------------~~~~-~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~~--~~~---------------~~~~~~  200 (418)
T TIGR00889       155 I----------------ELSN-IQLYITAGSSALLGVFALTLPDIPVAKSTAKM--SIK---------------VMLGLD  200 (418)
T ss_pred             c----------------cchh-HHHHHHHHHHHHHHHHHhcCCCCCCCcccccc--CHH---------------HHhhhh
Confidence            3                1112 23455555555555555677876432211110  000               000112


Q ss_pred             cccccccchhHHHHHHHHHHHhhhhhHHHHHHHhhcCCcccC--ccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 015847          275 KKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLG--GLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILG  352 (399)
Q Consensus       275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~  352 (399)
                      .++.+|+|.++...+..++..........+++.|..+.....  .-+++....+...+...+..+++. +..+++.||+|
T Consensus       201 ~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~i~~i~~~-~~~g~l~dr~g  279 (418)
T TIGR00889       201 AFILFKNKRMAIFFFFSMLLGAPLQITNIFGNGFLHEFGRNPEFADSFVVKNASIWMSLSQFSEIFFI-LTIPFFLKRFG  279 (418)
T ss_pred             HHHHhcCCCeeeHHHHHHHHHhHHHHHHHhHHHHHHHhcccccccchhhhhhHHHHHHHHHHHHHHHH-HHHHHHHHHhC
Confidence            335678888777766666655544455566666665420000  012345677999999999999998 48899999999


Q ss_pred             chhHHHHHHHHHHHHHhHHhH
Q 015847          353 PIMVARIAGVLTIPLLTSYPY  373 (399)
Q Consensus       353 ~~~~~~~~~~~~~~~~~~~~~  373 (399)
                      +|+.+..+.++..+...++..
T Consensus       280 ~r~~l~~~~~~~~v~~~l~~~  300 (418)
T TIGR00889       280 IKKVMLLSLVAWALRFGFFAY  300 (418)
T ss_pred             cHHHHHHHHHHHHHHHHHHHH
Confidence            999999998888777655544

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>TIGR00806 rfc RFC reduced folate carrier

Probab=99.87  E-value=3.2e-20  Score=168.72  Aligned_cols=166  Identities=13%  Similarity=0.110  Sum_probs=141.5

Q ss_pred             ccchhhhHHHHHHHhccCccccchhhhhhHHHHHHHHHHHhhhhcccccccccCCchhhHHHHHHHHHHHHHHhccchHH
Q 015847           57 ISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFW  136 (399)
Q Consensus        57 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~  136 (399)
                      ........|++.+++|+++.+.     .|.+.+++..++++..++.|+++||+|.|+++.++.+.+.+..++.++++++.
T Consensus        42 R~n~s~a~p~L~~elglT~~qv-----~G~I~s~F~ysYal~qIp~GlLaDrlG~K~vL~l~~l~Wsl~t~L~~fa~Sl~  116 (511)
T TIGR00806        42 RPGESFITPYLLTVLNFTEETV-----TNEIIPVLPYSHLAVLVPVFLLTDYLRYKPVLVLQALSFVCVWLLLLLGTSVW  116 (511)
T ss_pred             hchHHHHHHHHHHHcCCCHHHh-----cchHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4555667788999999998762     78999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhhccchhhHHHHHhhhccchhhhHHHHHHHHHHHHHHhHHHHhhhhhcCCCCCCCCcccccccccCCcch
Q 015847          137 MAVLTRFLLGSLNGLLGPIKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYF  216 (399)
Q Consensus       137 ~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~i~~~l~~~~~~~~~~~gw~~~f~~~~~~  216 (399)
                      .+.+.|++.|++.|...+...++..++|+++|+++.++.+++..+|.++++++++++.        .+|||+..      
T Consensus       117 ~L~i~R~llGvaEA~~~A~~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~qll~--------s~gWr~y~------  182 (511)
T TIGR00806       117 HMQLMEVFYSVTMAARIAYSSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQLLV--------TLGWISYS------  182 (511)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------hcCchhHH------
Confidence            9999999999998887755999999999999999999999999999999999999944        46777543      


Q ss_pred             hhHHHHHHHHHHHHHHHHhcccCCC
Q 015847          217 LPCLCISLFAFGVTIAAFWLPETLH  241 (399)
Q Consensus       217 ~~~~~~~~~~~~~~~~~~~~~e~~~  241 (399)
                      ...++......++++..+++|..++
T Consensus       183 ~Ln~Isl~s~~~a~~~a~~LP~~~~  207 (511)
T TIGR00806       183 TLNIISLVFMTFSVFLALFLKRPKR  207 (511)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCCch
Confidence            2334444444555666778884443

Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=99.87  E-value=5.5e-20  Score=174.57  Aligned_cols=149  Identities=15%  Similarity=0.236  Sum_probs=133.8

Q ss_pred             hHHHHHHHHHHHhhccccchhhhHHHHHH-H--hccCccccchhhhhhHHHHHHHHHHHhhhhcccccccc-cCCchhhH
Q 015847           41 TELFSIWIIVLCTALPISSLFPFLYFMIK-D--FQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADR-YGRKPVII  116 (399)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~dr-~Grr~~l~  116 (399)
                      +.++.+....++..+..+...+.+|.+.+ +  +|.+..+      .+++.+.+.++..+++++.|+++|| +|||+++.
T Consensus        10 ~~~~~l~~~~~~~~~~~~~~~~~L~~yl~~~~~lg~s~~~------ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l~   83 (475)
T TIGR00924        10 KPLFTLFFVELWERFSYYGMQGILAVYLVQQAGLGFSQEQ------AFIIFGAYSALVYLLTSVGWWFGDRVWGTKKTMV   83 (475)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHH------HHHHHHHHHHHHHHHHhhHHHHHHhhcchHHHHH
Confidence            44566777788888888888888886654 4  8999999      9999999999999999999999999 89999999


Q ss_pred             HHHHHHHHHHHHHhccchHHHHHHHHHHHhhhccchhhH-HHHHhhhccchh---hhHHHHHHHHHHHHHHhHHHHhhhh
Q 015847          117 MGTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEH---QALGLSTVSTAWGIGLIIGPALGGF  192 (399)
Q Consensus       117 ~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~-~~~~~~~~~~~~---r~~~~~~~~~~~~~g~~~~p~i~~~  192 (399)
                      ++.++.+++.++.+++++++.+++.|.+.|++.|...+. .++++|++|+++   |++++++.+.+.++|..+||.++++
T Consensus        84 ~~~~~~~~g~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~ig~~l~g~  163 (475)
T TIGR00924        84 LGGIVLMLGHFMLAMSIYPDLIFYGLGTIAVGSGLFKANPSSMVGKLYERGDMPRRDGGFTLFYMSINIGSFISPLLAGV  163 (475)
T ss_pred             HHHHHHHHHHHHHHhcccHhHHHHHHHHHHhccccccCCHHHHHHHhcCCCCcccccceehhHHHHHHHHHHHHHHHHHH
Confidence            999999999999999989989999999999999887775 899999998754   8889999999999999999999999


Q ss_pred             hcC
Q 015847          193 LAQ  195 (399)
Q Consensus       193 l~~  195 (399)
                      +.+
T Consensus       164 l~~  166 (475)
T TIGR00924       164 IAE  166 (475)
T ss_pred             HHH
Confidence            987

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=99.87  E-value=1.6e-20  Score=177.58  Aligned_cols=278  Identities=15%  Similarity=0.124  Sum_probs=189.9

Q ss_pred             ccchhhhH-HHHHHHhccCccccchhhhhhHHHHHHHHHHHhhhhcccccccc----cCCch-hhHHHHHHHHHHHHHHh
Q 015847           57 ISSLFPFL-YFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADR----YGRKP-VIIMGTASVVIFNTLFG  130 (399)
Q Consensus        57 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~dr----~Grr~-~l~~~~~~~~~~~~~~~  130 (399)
                      .....+++ +++.+++|+++.+      .|++.++..+..++..|+.|+++||    +|||| .++.+....+++.+++.
T Consensus        15 ~~~~~~~l~~~~~~~~g~s~~~------~g~i~~~~~i~~~i~~p~~G~lsDr~~~r~Grrr~~i~~~~~~~~i~~~~~~   88 (437)
T TIGR00792        15 FAIVSTYLLFFYTDVLGLSAAF------VGTLFLVARILDAITDPIMGNIVDRTRTRWGKFRPWLLIGAIPFSIVLVLLF   88 (437)
T ss_pred             HHHHHHHHHHHHHHccCCCHHH------HHHHHHHHHHHHHhccchheEeeecCCCCCCCcchhHHHhHHHHHHHHHHHH
Confidence            34444444 4666789999999      9999999999999999999999998    67755 56677788887777776


Q ss_pred             ccch------HHHHHHHHHHHhhhccchhh-HHHHHhhhc-cchhhhHHHHHHHHHHHHHHhHHHHhhhhhcCCCCCCCC
Q 015847          131 LSVN------FWMAVLTRFLLGSLNGLLGP-IKAYACEIF-REEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPN  202 (399)
Q Consensus       131 ~~~~------~~~l~~~r~l~G~~~~~~~~-~~~~~~~~~-~~~~r~~~~~~~~~~~~~g~~~~p~i~~~l~~~~~~~~~  202 (399)
                      ..++      ...+++.+++.+++.+...+ ..++..|.. ++++|++..+..+.+..+|..+++.+.+.+....++..+
T Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~l~~~~~~~l~~~~~~~~~  168 (437)
T TIGR00792        89 TTPDFSATGKLVYAYITYILLGLFYSFVNIPYWSLVPAITLDPRERESLSTFRRFGATLGGLLVAVIVLPLVSYFGGGDD  168 (437)
T ss_pred             hCCCCCcchHHHHHHHHHHHHHHHHHhhcccHhhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcc
Confidence            6543      45667777888888776554 588888887 478999999999999999988887776666531110000


Q ss_pred             cccccccccCCcchhhHHHHHHHHHHHHHH-HHhcccCCCCCCCCCCccchhhhhhhhhhhhhhhccccCCccccccccc
Q 015847          203 LFSSESLFGKFPYFLPCLCISLFAFGVTIA-AFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKN  281 (399)
Q Consensus       203 ~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~-~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  281 (399)
                               .++|+..+.+.+++.++..+. .+..||++++.+++++++                  .+..+..+.++++
T Consensus       169 ---------~~g~~~~~~i~~~l~~~~~~~~~~~~~e~~~~~~~~~~~~------------------~~~~~~~~~l~~~  221 (437)
T TIGR00792       169 ---------KFGWFMFALVLALIGVVSLIICFFGTKERYSEIPKNIEKK------------------LSLKQIFKALFKN  221 (437)
T ss_pred             ---------cccHHHHHHHHHHHHHHHHHHHHcCCEecCCCCCcccccC------------------CCHHHHHHHHhCC
Confidence                     334565557776666654433 455666542211110000                  0011134567889


Q ss_pred             chhHHHHHHHHHHHhhhhhHHHHHHHhhcCCcccCccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHH
Q 015847          282 WPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAG  361 (399)
Q Consensus       282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  361 (399)
                      |.++...+..++..........+.+.|.+..     .+ ++.+.+.+.....++.+++. ++.+++.||+|+|+.+..+.
T Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~-~~~~~~~~~~~~~i~~ii~~-~~~~~l~~r~g~~~~~~~~~  294 (437)
T TIGR00792       222 DQLLILCLAYLFYNLAFNIKNGVQVYYFTYV-----LG-DPELFSYMGSIAIVAGLIGV-LLFPRLVKKFGRKILFAGGI  294 (437)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcchhheeEeee-----cC-ChHHHHHHHHHHHHHHHHHH-HHHHHHHHHhCcHHHHHHHH
Confidence            9988877777766666555555555444332     34 45566777777788888887 48899999999999998888


Q ss_pred             HHHHHHHhHHhHH
Q 015847          362 VLTIPLLTSYPYI  374 (399)
Q Consensus       362 ~~~~~~~~~~~~~  374 (399)
                      .+.+++.+.+.+.
T Consensus       295 ~~~~~~~~~~~~~  307 (437)
T TIGR00792       295 LLMVLGYLIFFFA  307 (437)
T ss_pred             HHHHHHHHHHHHc
Confidence            8777776665543

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=99.87  E-value=2e-19  Score=167.52  Aligned_cols=274  Identities=12%  Similarity=0.052  Sum_probs=192.2

Q ss_pred             HHHHHHHHHHhhccccchhhhHHHHHHHhccCccccchhhhhhHH--HHHHHHHHHhhhhcc-cccccccCCchhhHHHH
Q 015847           43 LFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYV--GSSFMFGRALTSVFW-GLVADRYGRKPVIIMGT  119 (399)
Q Consensus        43 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~-G~l~dr~Grr~~l~~~~  119 (399)
                      +..+...++.+++..+...|.+|.+.++.|.+..+      +|+.  .+.+.+...+.+|++ ++..||+||||..++..
T Consensus         3 ~~~~~~ly~~~g~~~~~~~p~lp~~l~~~g~~~~~------iGl~~~~~l~~~~~~l~~p~~~~~~~~~~g~r~~~i~~~   76 (390)
T TIGR02718         3 VITLGLLYLSQGIPIGLAMDALPTLLREDGAPLTA------LAFLPLVGLPWVVKFLWAPLVDNWWSWRLGRRRSWVLPM   76 (390)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHHcCCCHHH------HHHHHHHHHHHHHHHHHHHHHhccccccCCcchhHHHHH
Confidence            44566778889999999999999999999999999      9997  467788888888888 45799999999876665


Q ss_pred             HHH-HHHHHHHh---ccch-HHHHHHHHHHHhhhccchhhH-HHHHhhhccchhhhHHHHHHHHHHHHHHhHHHHhhhhh
Q 015847          120 ASV-VIFNTLFG---LSVN-FWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFL  193 (399)
Q Consensus       120 ~~~-~~~~~~~~---~~~~-~~~l~~~r~l~G~~~~~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~i~~~l  193 (399)
                      .+. ++.....+   ...+ ...++....+.++..+...+. .++..|..++++++...+....+..+|..+|+...+++
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~d~~~d~~~~~~~~~~~~~~~~~~~~~g~~lG~~~g~~~~~~l  156 (390)
T TIGR02718        77 QCLVSACLASLALVGPDVAGAGWAVGLLACASLASATQDIATDGMAAEHFNGRTLAKGNAVQIAGVMIGFFGGGAGTLVL  156 (390)
T ss_pred             HHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            332 21222222   2222 223333444444555555554 77888888888888888888888899999999999899


Q ss_pred             cCCCCCCCCcccccccccCCcchhhHHHHHHHHHHHHHHHHhcccCCCCCCCCCCccchhhhhhhhhhhhhhhccccCCc
Q 015847          194 AQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREAT  273 (399)
Q Consensus       194 ~~~~~~~~~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  273 (399)
                      .+       .+|         |+.++++.++..++..+..++++|++++++++++  +                   ...
T Consensus       157 ~~-------~~g---------w~~~f~~~a~l~~~~~~~~~~~~~~~~~~~~~~~--~-------------------~~~  199 (390)
T TIGR02718       157 FG-------KFG---------QRPAFLLVACVPLASLVCVLWLKDRAVASPEAPL--A-------------------RRA  199 (390)
T ss_pred             HH-------HhC---------HHHHHHHHHHHHHHHHHHHHHcCCCCcCccccch--h-------------------hHH
Confidence            87       444         4555577777766655555555543321111000  0                   011


Q ss_pred             ccccccccchhHHHHHHHHHHHhhhhhHHHHHHHhhcCCcccCccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 015847          274 PKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGP  353 (399)
Q Consensus       274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~  353 (399)
                      +.++.+|+|.++......++..........+.+.|+.+      .|+++++.|.+....+....+.+.+..+++.||+++
T Consensus       200 ~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~------~G~s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r~g~  273 (390)
T TIGR02718       200 SLFRFFRRPLAWSLLALALLSAMTAVSGFGLSKLYLVD------AGWPLEWIGRLGMAGGAVTVLLGCGGGAWLVRRAGL  273 (390)
T ss_pred             HHHHHHcCcCHHHHHHHHHHHHHHHHHHHHHhhHHHHh------cCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhH
Confidence            34567888888877777777777777777788877765      689999999998888764444433588999999999


Q ss_pred             hhHHHHHHHHHH
Q 015847          354 IMVARIAGVLTI  365 (399)
Q Consensus       354 ~~~~~~~~~~~~  365 (399)
                      ++.+..+..+.+
T Consensus       274 ~~~l~~~~~~~~  285 (390)
T TIGR02718       274 WRTFILGVGLAG  285 (390)
T ss_pred             HHHHHHHHHHHH
Confidence            998887766553

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]

Probab=99.85  E-value=1e-18  Score=151.50  Aligned_cols=268  Identities=16%  Similarity=0.121  Sum_probs=218.1

Q ss_pred             cccchhhhHHHHHHHhccCccccchhhhhhHHHHHHHHHHHhhhhcccccccccCCchhhHHHHHHHHHHHHHHhccchH
Q 015847           56 PISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNF  135 (399)
Q Consensus        56 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~  135 (399)
                      ....+.|.++.+.+++|+|.+.      .|++++...++..+.+++..++++|+|.++.+..++++.+++.++-... +.
T Consensus        27 ~itsvgPLL~~Ir~~~gls~s~------aGlLTtLPll~fg~~ap~a~~Lar~~g~er~l~~~Llli~~G~~iR~~~-~~   99 (395)
T COG2807          27 AITSVGPLLDEIRQDLGLSFSV------AGLLTTLPLLAFGLFAPAAPRLARRFGEERSLFLALLLIAAGILIRSLG-GL   99 (395)
T ss_pred             hhhhhhhhHHHHHHHhcccHHH------HHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHhcc-cH
Confidence            4567889999999999999999      9999999999999999999999999999999999999999999988777 77


Q ss_pred             HHHHHHHHHHhhhccchhhH-HHHHhhhccchhhhHHHHHHHHHHHHHHhHHHHhhhhhcCCCCCCCCcccccccccCCc
Q 015847          136 WMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFP  214 (399)
Q Consensus       136 ~~l~~~r~l~G~~~~~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~i~~~l~~~~~~~~~~~gw~~~f~~~~  214 (399)
                      ..++.+-.+.|.+.+...+. ++++.+.|| |+-+..+|++.+...+|+.+++.+.-.+.++      ..|||...    
T Consensus       100 ~~L~~gt~l~G~gIav~nVLLPslIK~~Fp-k~~~~mtglYs~sl~~~aaLaa~lavpla~~------~~gW~~aL----  168 (395)
T COG2807         100 PLLFLGTLLAGAGIAVINVLLPSLIKRDFP-KRVGLMTGLYSTSLGAGAALAAALAVPLAQH------SGGWRGAL----  168 (395)
T ss_pred             HHHHHHHHHHHhhHHHHHHhhhHHHHhhcc-cchhhHHhHHHHHHHHHHHHHhhhhhHHHHh------hccHHHHH----
Confidence            88888999999999999886 999999998 5568999999999999999999999999872      12455443    


Q ss_pred             chhhHHHHHHHHHHHHHHHHhcccCCCCCCCCCCccchhhhhhhhhhhhhhhccccCCcccccccccchhHHHHHHHHHH
Q 015847          215 YFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKNWPLMSSIIVYCVF  294 (399)
Q Consensus       215 ~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  294 (399)
                           ..-++++++.++.++  |...+++....+                     ....+...++|+|.-|...+.+.+.
T Consensus       169 -----~~WAl~allAl~~Wl--Pq~~r~~~~~~~---------------------~~~~~~~~vw~~~~aW~vtLfmGlq  220 (395)
T COG2807         169 -----GFWALLALLALLIWL--PQALREQAASIA---------------------TKLVSVRKVWRSPLAWQVTLFMGLQ  220 (395)
T ss_pred             -----HHHHHHHHHHHHHHh--hhcccccccccc---------------------cccccccccccCchhHHHHHHHHhh
Confidence                 555566665555544  443221111100                     0112345689999999999999999


Q ss_pred             HhhhhhHHHHHHHhhcCCcccCccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchhHHHHHHHHHHHHHhHHhH
Q 015847          295 SLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERIL-GPIMVARIAGVLTIPLLTSYPY  373 (399)
Q Consensus       295 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~  373 (399)
                      ++..+....++|.++.+      .|+|+.++|.+.+...+.....++ ..+++.+|. ++|+.......++.++...+.+
T Consensus       221 S~~~Y~~~~WLP~ili~------~G~sa~~aG~llsl~~l~~~~~~l-l~P~la~R~~n~r~~~~~~~~~~l~G~~G~~~  293 (395)
T COG2807         221 SLLYYIVIGWLPAILID------RGLSAAEAGSLLSLMQLAQLPTAL-LIPLLARRSKNQRPLVVLALLLMLVGLVGLLL  293 (395)
T ss_pred             HHHHHHHHHHHHHHHHH------cCCCHHHhhhHHHHHHHHHHHHHH-HHHHHHHHhcccchHHHHHHHHHHHHHHHHHH
Confidence            99999999999999988      699999999999999999999995 888888864 5666667777777777777665


Q ss_pred             HHH
Q 015847          374 IAM  376 (399)
Q Consensus       374 ~~~  376 (399)
                      .+.
T Consensus       294 ~P~  296 (395)
T COG2807         294 APG  296 (395)
T ss_pred             hhh
Confidence            554

>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]

Probab=99.85  E-value=1.1e-19  Score=175.57  Aligned_cols=277  Identities=17%  Similarity=0.136  Sum_probs=188.4

Q ss_pred             HHHhccCccccchhhhhhHHHHHHHHHHHhhhhcccccccccCCchhhHHHHHHHHHHHHHHhccchHHHHHHHHHHHhh
Q 015847           68 IKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGS  147 (399)
Q Consensus        68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~  147 (399)
                      .+.++.+...      ..+..+++.+|..+|++++|+++||+|||++++.+.++..++.++.++++|++.+++.|++.|+
T Consensus       110 ~~~~c~~~~~------~~~~~s~~~~G~~vG~~i~g~lsD~~GRk~~~~~~~~~~~i~~~~~a~a~~~~~~~~~Rfl~G~  183 (521)
T KOG0255|consen  110 WNLVCDSSTL------VALGQSLFFLGVLVGSLIFGPLSDRFGRKPVLLVSLLLFIIFGILTAFAPNYWMFLIFRFLSGF  183 (521)
T ss_pred             hceeeCcHhH------HHHHHHHHHHHHHHHHhhheehHhhcccHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHh
Confidence            3555666666      8999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hccchhh-HHHHHhhhccchhhhHHHHHHHHHHHHHHhHHHHhhhhhcCCCCCCCCcccccccccCCcchhhHHHHHHHH
Q 015847          148 LNGLLGP-IKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFA  226 (399)
Q Consensus       148 ~~~~~~~-~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~i~~~l~~~~~~~~~~~gw~~~f~~~~~~~~~~~~~~~~  226 (399)
                      +.+.... ...+++|++++++|+.+..+ ......++.++|..++++..         +||+.+         ++..++.
T Consensus       184 ~~~~~~~~~~~~~~E~~~~~~R~~~~~~-~~~~~~~~~~~~~~~a~~~~---------~Wr~~~---------~~~~~~~  244 (521)
T KOG0255|consen  184 FGSGPLTVGFGLVAEIVSPKQRGLALTL-GGFFFVGGLMLPAGAAYITR---------DWRWLF---------WIISIPS  244 (521)
T ss_pred             hccchhHHhHhhheeecCcchhhHHHHH-HHHHHHHHHHHHHHHHHHHh---------hHHHHH---------HHHHHHH
Confidence            8666555 59999999999999999999 77778888888888888864         455444         7777777


Q ss_pred             HHHHHHHHhcccCCCCCCCCCCccchh--hhhhhh------h----hhhh---hhc---cccCCcccccccccchhHHHH
Q 015847          227 FGVTIAAFWLPETLHRHNDDDDSCDVS--YDALES------A----SAEV---KEE---EGREATPKKSLLKNWPLMSSI  288 (399)
Q Consensus       227 ~~~~~~~~~~~e~~~~~~~~~~~~~~~--~~~~~~------~----~~~~---~~~---~~~~~~~~~~~~~~~~~~~~~  288 (399)
                      ++.++..+..||++++...+.+.++..  .++..+      .    .+..   +++   ..+.......+++.|++....
T Consensus       245 ~~~~~~~~l~~Es~rwl~~~g~~~~a~~~l~~~a~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~  324 (521)
T KOG0255|consen  245 GLFLLLWFLPPESPRWLLSKGRIDEAIKILKKIAKLNGRKLSVKELLRLELLLRPLKLLFTEPKISFLDLFRTPRLRYRT  324 (521)
T ss_pred             HHHHHHHHccCcChHHHHHcCchHHHHHHHHHHHhhcCCCCCcHHHHHHHHHhhHhhhhccCCCCchhhhhcCHHHHHHH
Confidence            766666666779998765444332211  111100      0    0000   000   011223456677777654444


Q ss_pred             HHHHHHHhhhhhHHHHHHHhhcCCcccCccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHH
Q 015847          289 IVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLL  368 (399)
Q Consensus       289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  368 (399)
                      +...+..+.......-++.....      +|.+.   .......+....... ...+...++.|||.....+..+..+++
T Consensus       325 ~~~~~~~~~~~~~y~gl~~~~~~------lg~~~---~~~~~~~~~~~~p~~-~~~~~~~~~~gR~~~~~~~~~~~~~~~  394 (521)
T KOG0255|consen  325 LYLLFIWFVFSLVYYGLSLNVSG------LGGNI---YLNFTLSGLVELPAY-FRNGLLLPEFGRRPPLFLSLFLAGIGL  394 (521)
T ss_pred             HHHHHHHHHHhHHHHhhhhhhhh------cCchH---HHHHHHHHHHHhhHH-HHHHHHHHHhCcHHHHHHHHHHHHHHH
Confidence            43333332222221111211111      33232   233333333444444 366788899999999999999999999


Q ss_pred             hHHhHHHHHHH
Q 015847          369 TSYPYIAMLSG  379 (399)
Q Consensus       369 ~~~~~~~~~~~  379 (399)
                      +...+......
T Consensus       395 ~~~~~~~~~~~  405 (521)
T KOG0255|consen  395 LLFGWLPDDLG  405 (521)
T ss_pred             HHHHHhhccch
Confidence            88887765443

>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]

Probab=99.83  E-value=1e-18  Score=150.97  Aligned_cols=186  Identities=20%  Similarity=0.168  Sum_probs=153.3

Q ss_pred             hhHHHHHHHHHHHhhccccchhhhHHHHHHHhccCccccchhhhhhHHHHHHHHHHHhhhhcccccccccCCchhhHHHH
Q 015847           40 ITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGT  119 (399)
Q Consensus        40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~  119 (399)
                      +..............+......-+.|...+..|.+..+      ..++......+..+++..+|..+|++|||+.+.+..
T Consensus        77 ~yl~~~ag~gwmad~m~~m~~s~i~~~l~~~w~~s~~q------~~llt~~v~~gmllga~~w~l~~d~~grr~~f~~T~  150 (528)
T KOG0253|consen   77 WYLFFVAGMGWMADAMEMMLLSLILPALDEVWGPSEGQ------APLLTLSVFLGMLVGAMVWGLSADTIGRRKGFNLTF  150 (528)
T ss_pred             hhHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhchhhhh------hhHHHHHHHhhhhhhhhhhheehhhhhcchhhhhhH
Confidence            34444445555555555555666667788888988888      999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhccchHHHHHHHHHHHhhhccchhhHHHHHhhhccchhhhHHHHHHHHHHHHHHhHHHHhhhhhcCCCCC
Q 015847          120 ASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPIKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEK  199 (399)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~i~~~l~~~~~~  199 (399)
                      ...++..++.+.++|+..+++.|.+.|+|.|......++-.|..|..+|...+-.. ..+.+|.++...++-....    
T Consensus       151 l~t~v~~~is~~spnf~~L~~f~~l~~~g~gg~pv~~~~yle~lp~~~r~~~~V~~-~~waig~v~ea~law~vm~----  225 (528)
T KOG0253|consen  151 LVTGVFGVISGASPNFASLCVFRALWGFGVGGLPVDSAIYLEFLPSSHRWLLTVMS-FFWAIGQVFEALLAWGVMS----  225 (528)
T ss_pred             HHHHHHHHhhcCCCCeehhhHHHHHHhccCCCccHhHHHHHHhccCcCCCcchhHH-HHHHHHHHHHHHHHHHHHH----
Confidence            99999999999999999999999999999887433588889999999998877766 9999999999999988887    


Q ss_pred             CCCcccccccccCCcchhhHHHHHHHHHHHHHHHHhcccCCCCCCCCCC
Q 015847          200 YPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDD  248 (399)
Q Consensus       200 ~~~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~  248 (399)
                         .+|||+.+         +....+..+.....+++||+++....+.+
T Consensus       226 ---~~gwr~~l---------~~~~~pl~~~a~f~~w~~ESpRf~~~~G~  262 (528)
T KOG0253|consen  226 ---NFGWRYLL---------FTSSTPLMFAARFLVWVYESPRFYLAKGD  262 (528)
T ss_pred             ---hhhHHHHH---------HHHHhHHHHHHHHHhhcccCcchhhhcCC
Confidence               56776655         66666666777778899999987654433

>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters

Probab=99.82  E-value=2.9e-23  Score=197.13  Aligned_cols=306  Identities=18%  Similarity=0.246  Sum_probs=192.6

Q ss_pred             HHHHhhccccchhhhHHHHH--HHhccCccccc---hhhhhhHHHHHHHHHHHhhhhcccccccccCCchhhHHHHHHHH
Q 015847           49 IVLCTALPISSLFPFLYFMI--KDFQIAKREED---IGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVV  123 (399)
Q Consensus        49 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~  123 (399)
                      +.+..+++........+...  .+++.+.....   .....++..+...++..+|++++|.++||+|||+.+.++.++..
T Consensus         8 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~G~~~~g~~~d~~GRk~~~~~~~~~~~   87 (451)
T PF00083_consen    8 GGFLFGYDLGLIGSFASLLGFLQFFGWSSSESSCEKSSLLSSLLTSSFFIGAIVGALIFGFLADRYGRKPALIISALLMI   87 (451)
T ss_pred             HHHHHHHHHHHHhhHHhhhhhhhccccccccccccchHHHHHHHHHHHHhhhcccccccccccccccccccccccccccc
Confidence            34555665555555544333  22333322211   22347899999999999999999999999999999999999999


Q ss_pred             HHHHHHhccc---hHHHHHHHHHHHhhhccchhh-HHHHHhhhccchhhhHHHHHHHHHHHHHHhHHHHhhhhhcCCCCC
Q 015847          124 IFNTLFGLSV---NFWMAVLTRFLLGSLNGLLGP-IKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEK  199 (399)
Q Consensus       124 ~~~~~~~~~~---~~~~l~~~r~l~G~~~~~~~~-~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~i~~~l~~~~~~  199 (399)
                      ++.++.++++   +++.+.++|++.|++.|...+ ...++.|..|+++|++..++.+....+|..++..++..+...   
T Consensus        88 i~~~~~~~~~~~~~~~~~~~~R~~~G~~~g~~~~~~~~~~~E~~~~~~R~~~~~~~~~~~~~G~~~~~~~~~~~~~~---  164 (451)
T PF00083_consen   88 IGSILIAFAPSYNNFWMLLIGRFLIGFGIGGAYVVSPIYISEIAPPKHRGFLSSLFQLFWALGILLASLIGYIVSYY---  164 (451)
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc---
Confidence            9999999999   999999999999999888776 599999999999999999999999999999888887655431   


Q ss_pred             CCCcccccccccCCcchhhHHHHHHHHHHHHHHHHhcccCCCCCCCCCCccchh--hhhhh---hhhhhhhhc----cc-
Q 015847          200 YPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVS--YDALE---SASAEVKEE----EG-  269 (399)
Q Consensus       200 ~~~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~--~~~~~---~~~~~~~~~----~~-  269 (399)
                          .+      .+.||..+...++++++..+...++||+|++...+++.++..  .++.+   ..+++.++.    ++ 
T Consensus       165 ----~~------~~~Wr~~~~~~~~~~l~~~~~~~~~pESP~wL~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~  234 (451)
T PF00083_consen  165 ----SD------NWGWRILLIFGAIPSLLVLLLRFFLPESPRWLLSKGRDEEAEKVLRKLRGKEIEDEEIEEIKAEKKES  234 (451)
T ss_pred             ----cc------cccccccccccccccccccccccccccccceecccccccccccccccccccccccccccccccccccc
Confidence                11      123444447777777777777788999998865444332221  11111   001111110    00 


Q ss_pred             -cCCcccccccccchh-HHHHHHHHHHHhhhhhHHHHHHHhhcCCcccCccccchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 015847          270 -REATPKKSLLKNWPL-MSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFL  347 (399)
Q Consensus       270 -~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l  347 (399)
                       +....++++++++.. +.......+..............|..  ...+..+.+..  -......++...++. +++.++
T Consensus       235 ~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~--~i~~~~~~~~~--~~~~~~~~~~~~~~~-~~~~~~  309 (451)
T PF00083_consen  235 QESKASWRDLFRNKKYRKRLLIALLLQFFQQFSGINFIFYYSP--SIFENAGISNS--FLATLILGLVNFLGT-LLAIFL  309 (451)
T ss_pred             cccceeeeecccccccccccccccccccccccccccccccccc--ccccccccccc--ccccccccccccccc-cccccc
Confidence             111345666666442 12222222222221111111111111  11122455554  112222334444444 356689


Q ss_pred             HHHhcchhHHHHHHHHHHHHHhHHh
Q 015847          348 ERILGPIMVARIAGVLTIPLLTSYP  372 (399)
Q Consensus       348 ~~~~~~~~~~~~~~~~~~~~~~~~~  372 (399)
                      .||+|||+.+..+.....++...+.
T Consensus       310 ~~~~GRr~~~i~~~~~~~~~~~~~~  334 (451)
T PF00083_consen  310 IDRFGRRKLLIIGLLLMAICSLILG  334 (451)
T ss_pred             ccccccccccccccccccccccccc
Confidence            9999999999888888777766653

Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter

Probab=99.81  E-value=1.8e-17  Score=154.60  Aligned_cols=315  Identities=17%  Similarity=0.170  Sum_probs=198.1

Q ss_pred             ChhHHHHHHHHHHHhhccccchhhhHHHHHHHhccCccccchhhhhhHHHHHHHHHHHhhhhccccccc----ccCCchh
Q 015847           39 PITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVAD----RYGRKPV  114 (399)
Q Consensus        39 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~d----r~Grr~~  114 (399)
                      |.++++.++...+...+......+.++.+.+++|.+...      .+++..+..+...+.+|+.|+++|    |+||||+
T Consensus         2 ~~~~li~~~~~~~Giq~~~~l~~~~l~~yl~~lg~~~~~------~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp   75 (477)
T TIGR01301         2 PLRKLLRVASVAAGVQFGWALQLSLLTPYVQELGIPHAW------ASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRRP   75 (477)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHH------HHHHHHHHHHHHHHHHhHeeehhcCCCCCCCChHH
Confidence            345667777777777788888889999899999999988      999999999999999999999999    5999999


Q ss_pred             hHHH-HHHHHHHHHHHhccchHH-----------------HHHHHHHHHhhhccch-hhHHHHHhhhccchhh--hHHHH
Q 015847          115 IIMG-TASVVIFNTLFGLSVNFW-----------------MAVLTRFLLGSLNGLL-GPIKAYACEIFREEHQ--ALGLS  173 (399)
Q Consensus       115 l~~~-~~~~~~~~~~~~~~~~~~-----------------~l~~~r~l~G~~~~~~-~~~~~~~~~~~~~~~r--~~~~~  173 (399)
                      ++++ ....+++.++++++++.+                 ..+++-.+..++.... .|..++++|.+|+++|  +.+.+
T Consensus        76 ~il~g~~~~~~~l~ll~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~~~~~a~~  155 (477)
T TIGR01301        76 FIAAGAALVAFAVILIGFAADIGHLFGDNLDKKTKPRAIIVFVVGFWILDVANNMLQGPCRAFLADLTGGDARRTRIANA  155 (477)
T ss_pred             HHHHHHHHHHHHHHHHHhCchhhhhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCchhHHHHHHHH
Confidence            8875 666666767777766542                 2222333344455544 4469999999998865  57899


Q ss_pred             HHHHHHHHHHhHHHHhhhhhcCCCCCCCCcccccc--cc--cCCcchhhHHHHHHHHHHHH-HHHHhcccCCCCCCCCCC
Q 015847          174 TVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSES--LF--GKFPYFLPCLCISLFAFGVT-IAAFWLPETLHRHNDDDD  248 (399)
Q Consensus       174 ~~~~~~~~g~~~~p~i~~~l~~~~~~~~~~~gw~~--~f--~~~~~~~~~~~~~~~~~~~~-~~~~~~~e~~~~~~~~~~  248 (399)
                      +.+.+.++|..+|+.++++.....     .+++..  ..  -..+.+..|.+.++..++.. +..+..||.+...+++.+
T Consensus       156 ~~~~~~~lG~ilg~~~g~~~~~~~-----~~~~~~~~~~~~~~~~~~~~F~i~a~~l~i~~l~t~~~v~E~~~~~~~~~~  230 (477)
T TIGR01301       156 YFSFFMAIGNVLGYAAGAYSGLYK-----IFPFTKTEACGVSCANLKSCFLIDIILLAILTYIALSAVKENPLIGSDDFI  230 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhHHH-----hcccccccccccccchHHHHHHHHHHHHHHHHHHHeeeeeccCCCccccch
Confidence            999999999999999998752100     111100  00  01245666677776666544 445667886643221110


Q ss_pred             ccchhhhhhhhhhhhhhhccccCCcccccccc-----cchhHHHHHHHHHHHhhhhhHHHHHHHhhcCCcccCccccch-
Q 015847          249 SCDVSYDALESASAEVKEEEGREATPKKSLLK-----NWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYST-  322 (399)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-  322 (399)
                      +++     .++..      +.......+++++     .+.++..++..++..+..+.+..+.+.|..+......-+-+. 
T Consensus       231 ~~~-----~~~~~------~~~~~~~~~~i~~~~~~mP~~m~~l~~vqffsW~a~f~~~~y~T~~vg~~v~~~~~~~~~~  299 (477)
T TIGR01301       231 NSE-----AAPPS------KHGEEAFFGELFGAFKYLPRPVWILLLVTCLNWIAWFPFILFDTDWMGREVYGGSVNQGAK  299 (477)
T ss_pred             hhh-----ccccc------ccchhhhHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHcCCCCcchhH
Confidence            000     00000      0000011122222     256677788888877777777666665544321111000000 


Q ss_pred             -hh---HH-HHHHHHHHHHHHHHHHHHHHHHHHhcc-hhHHHHHHHHHHHHHhHHhHHHH
Q 015847          323 -QM---VG-EVLAITGFSLLVFQLSLYPFLERILGP-IMVARIAGVLTIPLLTSYPYIAM  376 (399)
Q Consensus       323 -~~---~g-~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~  376 (399)
                       ++   .| +....+++...+.+ ++..++.+++|+ |+....+.++.++++....+.+.
T Consensus       300 y~~gvr~G~~~l~~~s~~~~i~s-~~l~~l~~~~g~~k~~~~~s~~~~~~~l~~~~~i~~  358 (477)
T TIGR01301       300 YDDGVRAGAFGLMLNSVVLGITS-IGMEKLCRGWGAGKRLWGIVNIILAICLAATVLVTY  358 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHh
Confidence             11   12 23444455555666 367888999985 66668888888888887776554

This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.

>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]

Probab=99.80  E-value=2.5e-20  Score=165.57  Aligned_cols=323  Identities=15%  Similarity=0.111  Sum_probs=197.2

Q ss_pred             HHHHHHHHHhhccccchhhhHHHHHHHh-ccCccc-cchhhhhhHHHHHHHHHHHhhhhcccccccccCCchhhHHHHHH
Q 015847           44 FSIWIIVLCTALPISSLFPFLYFMIKDF-QIAKRE-EDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTAS  121 (399)
Q Consensus        44 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~  121 (399)
                      .....+.+.+.++...++.+.|-+...| |.++.. ..-+...+.+..+..+|.++||+++|+++||+|||+++...+++
T Consensus        44 ~iAG~GfftDsYDlF~I~lVt~il~~lY~~~~~~~g~~ps~i~~~Vn~~A~vGti~GQl~FG~lgD~~GRK~vYG~~liI  123 (538)
T KOG0252|consen   44 IIAGMGFFTDSYDLFSISLVTKILGYLYYHGDESGGHYPSGVLALVNAAALVGTIFGQLFFGWLGDKFGRKKVYGKELII  123 (538)
T ss_pred             HHhhhhhcccchhhhhHHHHHHHHHHHhcCCCCCCCcCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhhhHHHHH
Confidence            3455677888888888888888776543 333211 11122278999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhccc-------hHHHHHHHHHHHhhhccchhhH-HHHHhhhccchhhhHHHHHHHHHHHHHHhHHHHhhhhh
Q 015847          122 VVIFNTLFGLSV-------NFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFL  193 (399)
Q Consensus       122 ~~~~~~~~~~~~-------~~~~l~~~r~l~G~~~~~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~i~~~l  193 (399)
                      ..+++++++++.       -++++...|++.|+|.|.-.|. .+..+|...++.||...+..-+..+.|...|.+++-.+
T Consensus       124 mIi~t~~~~~s~~~~~~~~~m~~L~~~R~~LGiGIGGDYPlSAtI~SE~an~~~RGa~iaavFa~Qg~GilaG~ivt~Iv  203 (538)
T KOG0252|consen  124 MIICSALSGLSVGTTSPLGVMMTLCFFRFLLGIGIGGDYPLSATIMSESANKKTRGAFIAAVFAMQGFGILAGGIVALIV  203 (538)
T ss_pred             HHHHHHHhccCCCCCCCcchhhHHHHHHHHhhccccCCCcchHHHhhhhhhhccccceeEEEEEecchhHhhccHHHHHH
Confidence            999998887742       2578889999999999998886 88899999999999999988777777777666666544


Q ss_pred             cCCCCCCCCcccccccc--cCCcchhhHHHHHHHHHHHHHHHHhcccCCCCCCCCCCcc----chhhhhhhhh--hhhhh
Q 015847          194 AQPAEKYPNLFSSESLF--GKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSC----DVSYDALESA--SAEVK  265 (399)
Q Consensus       194 ~~~~~~~~~~~gw~~~f--~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~----~~~~~~~~~~--~~~~~  265 (399)
                      ..-...   .++-+...  -+.-||+.+.+.+++++..+...+.+||+++......++.    ++..+.+...  .++..
T Consensus       204 ~~~fe~---~~~~~~~~~~ld~vWRl~~glg~vpa~~~ly~Rl~M~Et~~Y~al~~~~~~~a~~d~~k~~~~~~~~~~~~  280 (538)
T KOG0252|consen  204 SAIFEK---IFNGPSTYPHLDGVWRIIFGLGAVPALLVLYFRLKMPETARYTALVSKKLKQAAGDMKKVLSVDIEAESTA  280 (538)
T ss_pred             HHHHhc---cCCCCCCchHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchhHHHHhhcCHhhhhhccccccccccchhhcc
Confidence            321000   11111000  0223677668888888888888888999987652111110    0000000000  00000


Q ss_pred             hccccCCcc----cccccccc---hhHHHHHHHHHHHhhhhhHHHHHHHhhcCCcccCccccchhhHHH--------HHH
Q 015847          266 EEEGREATP----KKSLLKNW---PLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGE--------VLA  330 (399)
Q Consensus       266 ~~~~~~~~~----~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~--------~~~  330 (399)
                      +...+.+..    +...+..+   .++.....+++.-...+....+....+..      .|+.+.....        ...
T Consensus       281 ~~~~~~~~~~~~~F~~~f~~~hg~~Llgt~~~WFllDiafy~~nL~~s~I~~~------ig~~~~~~~~~~~~~vA~~~~  354 (538)
T KOG0252|consen  281 ESDVPPPSNSFGLFSRLFLRWHGKHLLGTAGTWFLLDIAFYGQNLFQSVIFSA------IGVIPSANTYHELFKVAEGNL  354 (538)
T ss_pred             ccCCCCcccccchHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccHHHHHHHh------hccCCCcchHHHHHHHHHHHH
Confidence            111111111    11222222   23334445555544444444443333332      3444433332        122


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHhHHhHHH
Q 015847          331 ITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIA  375 (399)
Q Consensus       331 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  375 (399)
                      +...+..+-...+...+.|++||+++...+++++.+..+.++...
T Consensus       355 iia~~~~vPGyw~tv~~id~iGRk~iq~~GF~~~~i~~~~~~~~y  399 (538)
T KOG0252|consen  355 IIAVCSTVPGYWFTVYFIDIIGRKYIQLMGFFIMTIFFFVIAGPY  399 (538)
T ss_pred             HHHHHccCCceeEEEEEeehhhhHHHHHhhHHHHHHHHHHHcCCc
Confidence            222222221223455678999999999999999998888776543

>PRK09669 putative symporter YagG; Provisional

Probab=99.80  E-value=2.1e-17  Score=156.46  Aligned_cols=269  Identities=17%  Similarity=0.070  Sum_probs=168.3

Q ss_pred             ccchhhhH-HHHHHHhccCccccchhhhhhHHHHHHHHHHHhhhhcccccccc----cCCch-hhHHHHHHHHHHHHHHh
Q 015847           57 ISSLFPFL-YFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADR----YGRKP-VIIMGTASVVIFNTLFG  130 (399)
Q Consensus        57 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~dr----~Grr~-~l~~~~~~~~~~~~~~~  130 (399)
                      ......++ .++.+++|++..+      +|.+.++..+...+..|+.|.++||    +|||| .++.+.+..+++.++..
T Consensus        25 ~~~~~~~l~~~~t~~~gls~~~------~g~i~~i~~i~dai~dp~~G~lsD~~~~r~Grrrp~il~~~~~~~i~~~l~f   98 (444)
T PRK09669         25 WQTVMLFLAYFYTDVFGLSAAI------MGTMFLVVRVLDAVTDPLMGALVDRTRTRHGQFRPYLLWFAIPFGVVCLLTF   98 (444)
T ss_pred             HHHHHHHHHHHHHHhcCCCHHH------HHHHHHHHHHHHHcccceeeEeeecCCCCCCCcchhHHHHHHHHHHHHHHHH
Confidence            33344444 4667889999999      9999999999999999999999998    78754 45567677766665544


Q ss_pred             ccch------HHHHHHHHHHHhhhccch-hhHHHHHhhhc-cchhhhHHHHHHHHHHHHHHhHHHHhhhhhcCCCCCCCC
Q 015847          131 LSVN------FWMAVLTRFLLGSLNGLL-GPIKAYACEIF-REEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPN  202 (399)
Q Consensus       131 ~~~~------~~~l~~~r~l~G~~~~~~-~~~~~~~~~~~-~~~~r~~~~~~~~~~~~~g~~~~p~i~~~l~~~~~~~~~  202 (399)
                      ..++      .+.+++..++.+.+.... .|..++.+|+. ++++|.+..+.......+|..+++.+...+...      
T Consensus        99 ~~p~~~~~~~~~~~~~~~~l~~~~~t~~~ip~~al~~~~t~~~~eR~~l~~~r~~~~~~G~~i~~~~~~pl~~~------  172 (444)
T PRK09669         99 YTPDFGATGKIIYACVTYILLSLVYTAINVPYCAMPGAITNDPRERHSLQSWRFALSFIGGLIVSVIALPLVDI------  172 (444)
T ss_pred             hCCCCCcchHHHHHHHHHHHHHHHHHhhcchHHHhHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------
Confidence            4432      455556666667654444 44588999988 568899988888888888888887766555431      


Q ss_pred             cccccccccCCcchhhHHHHHHHHHHHHHH-HHhcccCCCCCCCCCCccchhhhhhhhhhhhhhhccccCCccccccccc
Q 015847          203 LFSSESLFGKFPYFLPCLCISLFAFGVTIA-AFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKN  281 (399)
Q Consensus       203 ~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~-~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  281 (399)
                       ++.+. . +.+|+..+.+.++++++..+. .+..+|..++++++ +                    .+..+..+..+||
T Consensus       173 -~~~~~-~-~~g~~~~~~i~~ii~~v~~~~~~~~~~e~~~~~~~~-~--------------------~~~~~~~~~~~~n  228 (444)
T PRK09669        173 -LGKGD-E-QKGYFYAMMVMGLLGVVLFFCCFFMTKERYTPEVDN-S--------------------SSVWKDLKLLLGN  228 (444)
T ss_pred             -hCCCc-h-hhhHHHHHHHHHHHHHHHHHHHhCCeEEecCCCCcC-C--------------------CCHHHHHHHHhCC
Confidence             11100 0 234555555555555444333 34445532221100 0                    0011245667899


Q ss_pred             chhHHHHHHHHHHHhhhhhHHHHHHHhhcCCcccCccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHH
Q 015847          282 WPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAG  361 (399)
Q Consensus       282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  361 (399)
                      |+++...+..++............++|....     .+ ++...+.+.....+..+++. ++.+++.||+|+|+....+.
T Consensus       229 ~~~~~l~~~~~~~~~~~~~~~~~~~y~~~~~-----~~-~~~~~~~~~~~~~i~~ii~~-~~~~~l~~r~gk~~~~~~~~  301 (444)
T PRK09669        229 SQWRIMFIFNVVLLTAVVTRGGATLYYVNYV-----LL-RPDLATLFLVTGMIAGLFGA-LLSERLLGKFDRVRAFKWTI  301 (444)
T ss_pred             chHHHHHHHHHHHHHHHHHHhhhhheeeeee-----cC-CHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhChHHHHHHHH
Confidence            9988877776665555544444333333222     22 23333444554455666665 57889999999999988777


Q ss_pred             HHHHHHH
Q 015847          362 VLTIPLL  368 (399)
Q Consensus       362 ~~~~~~~  368 (399)
                      +...+..
T Consensus       302 ~~~~~~~  308 (444)
T PRK09669        302 VAFVILS  308 (444)
T ss_pred             HHHHHHH
Confidence            6555433

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=99.80  E-value=4.7e-17  Score=155.50  Aligned_cols=157  Identities=17%  Similarity=0.190  Sum_probs=126.9

Q ss_pred             hHHHHHHHHHHHhhccccchhhhHH-HHHHHhccCccccchhhhhhHHHHHHHHHHHhhhhcccccccc-cCCchhhHHH
Q 015847           41 TELFSIWIIVLCTALPISSLFPFLY-FMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADR-YGRKPVIIMG  118 (399)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~dr-~Grr~~l~~~  118 (399)
                      +.++.++...+...+..+...+.++ ++.+++|.+..+      .+++.+.+........++.|+++|| +|||+.+..+
T Consensus        21 ~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~------a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r~~~~~g   94 (500)
T PRK09584         21 KAFYLIFSIELWERFGYYGLQGIMAVYLVKQLGMSEAD------SITLFSSFSALVYGLVAIGGWLGDKVLGTKRVIMLG   94 (500)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHH
Confidence            3456666677777777777777776 445889999988      8888877776666667789999999 5999999999


Q ss_pred             HHHHHHHHHHHhccc-hHHHHHHHHHHHhhhccchhhH-HHHHhhhccchh--hhHHHHHHHHHHHHHHhHHHHhhhhhc
Q 015847          119 TASVVIFNTLFGLSV-NFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEH--QALGLSTVSTAWGIGLIIGPALGGFLA  194 (399)
Q Consensus       119 ~~~~~~~~~~~~~~~-~~~~l~~~r~l~G~~~~~~~~~-~~~~~~~~~~~~--r~~~~~~~~~~~~~g~~~~p~i~~~l~  194 (399)
                      .++.+++.+++++++ +.+.+++.|+++|++.|...+. .+++.|++|+++  |..++++++.+.++|..+||.+++++.
T Consensus        95 ~~~~~ig~~l~~~~~~~~~~l~~~~~l~gig~g~~~~~~~~l~~~~f~~~~~~~~~~~~~~~~~~~iG~~~gp~i~g~l~  174 (500)
T PRK09584         95 AIVLAIGYALVAWSGHDAGIVYMGMATIAVGNGLFKANPSSLLSTCYEKDDPRLDGAFTMYYMSINIGSFFSMLATPWLA  174 (500)
T ss_pred             HHHHHHHHHHHHHhcccHHHHHHHHHHHHHhhhcccCCHHHHHHHhcCCCchhhhhcchHHHHHHHHHHHHHHHHHHHHH
Confidence            999999998888864 5666778899999998887775 889999998643  456888889999999999999999998


Q ss_pred             CCCCCCCCcccccccc
Q 015847          195 QPAEKYPNLFSSESLF  210 (399)
Q Consensus       195 ~~~~~~~~~~gw~~~f  210 (399)
                      +       .+|||+.|
T Consensus       175 ~-------~~g~~~~F  183 (500)
T PRK09584        175 A-------KYGWSVAF  183 (500)
T ss_pred             H-------hhCHHHHH
Confidence            8       45555554

>PF13347 MFS_2: MFS/sugar transport protein

Probab=99.79  E-value=1.8e-17  Score=156.14  Aligned_cols=287  Identities=15%  Similarity=0.125  Sum_probs=201.7

Q ss_pred             HHHHHHHhccCccccchhhhhhHHHHHHHHHHHhhhhccccccc----ccCCchhh-HHHHHHHHHHHHHHhcc-c----
Q 015847           64 LYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVAD----RYGRKPVI-IMGTASVVIFNTLFGLS-V----  133 (399)
Q Consensus        64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~d----r~Grr~~l-~~~~~~~~~~~~~~~~~-~----  133 (399)
                      .+++.+.+|+++..      .|.+..+..+..++..|+.|.++|    |+||||.. ++|.+..+++.+++... +    
T Consensus        25 ~~f~~~~~gl~~~~------~g~i~~~~~i~dai~dp~~G~~sDr~~tr~Grrrp~~l~g~i~~~~~~~llf~~~p~~~~   98 (428)
T PF13347_consen   25 LYFYTDVLGLSPAL------AGLILLVGRIWDAITDPLIGYLSDRTRTRWGRRRPWILIGAILLALSFFLLFSPPPAGLS   98 (428)
T ss_pred             HHHHHHHcCCCHHH------HHHHHHHHHHhhhhcCCcEEEEEeeecccccccceEeehhhHHHHHHHHHhhccccchhh
Confidence            45666778999988      999999999999999999999999    89977654 56778888887777765 3    


Q ss_pred             ---hHHHHHHHHHHHhhhccchhh-HHHHHhhhcc-chhhhHHHHHHHHHHHHHHhHHHHhhhhhcCCCCCCCCcccccc
Q 015847          134 ---NFWMAVLTRFLLGSLNGLLGP-IKAYACEIFR-EEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSES  208 (399)
Q Consensus       134 ---~~~~l~~~r~l~G~~~~~~~~-~~~~~~~~~~-~~~r~~~~~~~~~~~~~g~~~~p~i~~~l~~~~~~~~~~~gw~~  208 (399)
                         ....+.+..++..++...... ..++..|..+ +++|.+..+....+..+|..+...+.+.+.+..+       ...
T Consensus        99 ~~~~~~~~~~~~~l~~~~~t~~~i~~~al~~~lt~~~~~R~~l~~~~~~~~~~g~~l~~~~~~~l~~~~g-------~~~  171 (428)
T PF13347_consen   99 FTAKLVWLFVFYILFDIAYTFVQIPYNALIPELTPDPDERTRLSSWRMIFSMIGSLLASFLAPILVSWFG-------GGD  171 (428)
T ss_pred             hhhHHHHHHHHHHHHHHhhhhccCchhhcCccccccHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhc-------cCc
Confidence               223346666667777666555 5999999998 5799999999999999998877777777765221       110


Q ss_pred             cccCCcchhhHHHHHHHHHHHHH-HHHhcccCCCCCCCCCCccchhhhhhhhhhhhhhhccccCCcccccccccchhHHH
Q 015847          209 LFGKFPYFLPCLCISLFAFGVTI-AAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKNWPLMSS  287 (399)
Q Consensus       209 ~f~~~~~~~~~~~~~~~~~~~~~-~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  287 (399)
                      .  ..+|+....+.+++.++..+ ..+..||..++.+++++                   +.+..+..+++++||+++..
T Consensus       172 ~--~~~~~~~~~v~~iv~~v~~~i~~~~~ke~~~~~~~~~~-------------------~~~~~~~~~~~~~nr~~~~l  230 (428)
T PF13347_consen  172 T--SNGYRWMALVLAIVGLVFFLITFFFVKERSVEVTEQEK-------------------KISLRDSLRSLFRNRPFRIL  230 (428)
T ss_pred             c--chHHHHHHHHHHHHHHHHhhhhhheeeecccccccccc-------------------ccccccchhhhcccchHHHH
Confidence            0  01455555666666655443 45556772211111111                   11223457788999999998


Q ss_pred             HHHHHHHHhhhhhHHHHHHHhhcCCcccCccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHH
Q 015847          288 IIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPL  367 (399)
Q Consensus       288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  367 (399)
                      ....++............+.|.+..     .|.+ ...+.+.....++.+++. ++.+++.||+|+|+.+..+..+.+++
T Consensus       231 ~~~~~~~~~~~~~~~~~~~y~~~~v-----l~~~-~~~~~~~~~~~~~~~v~~-~~~~~l~~r~gk~~~~~~~~~~~~~~  303 (428)
T PF13347_consen  231 LLAFFLQWLAFALMNTFLPYYFTYV-----LGNE-GLISIFMLIFFVASIVGS-PLWGRLSKRFGKKKVYIIGLLLAALG  303 (428)
T ss_pred             HHHHHHHHhhhhhhhhHHHHHHHHH-----hcCc-hhhHHHHHHHHHHHHHHH-HHHHHHHHHccceeehhhhHHHHHHH
Confidence            8888888787777777777777665     4434 456667777777777777 58899999999999999999999998


Q ss_pred             HhHHhHHHHHHHHHHHHHHHHHHh
Q 015847          368 LTSYPYIAMLSGFGLAFLLNCASV  391 (399)
Q Consensus       368 ~~~~~~~~~~~~~~~~~~~~~~~~  391 (399)
                      .+.+.+.+..............++
T Consensus       304 ~~~~~~~~~~~~~~~~i~~~l~gi  327 (428)
T PF13347_consen  304 FLLLFFLGPGSPWLVLILFILAGI  327 (428)
T ss_pred             HHHHHHHHhhhHHHHHHHHHHhHh
Confidence            888777763333333334344433

>PRK10429 melibiose:sodium symporter; Provisional

Probab=99.78  E-value=4.4e-17  Score=155.23  Aligned_cols=286  Identities=12%  Similarity=0.093  Sum_probs=178.9

Q ss_pred             HHHHHhhccccchhhhHH-HHHHHhccCccccchhhhhhHHHHHHHHHHHhhhhccccccc----ccCC-chhhHHHHHH
Q 015847           48 IIVLCTALPISSLFPFLY-FMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVAD----RYGR-KPVIIMGTAS  121 (399)
Q Consensus        48 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~d----r~Gr-r~~l~~~~~~  121 (399)
                      ++.+...+......++++ ++.+.+|++...      +|.+..+.-+..++..|+.|.++|    |+|| |+.++++.+.
T Consensus        13 ~g~~~~~~~~~~~~~~l~~yyt~v~Gls~~~------vg~i~~i~ri~dai~dp~~G~lsD~t~sr~Grrrp~il~g~i~   86 (473)
T PRK10429         13 FGAFGKDFAIGIVYMYLMYYYTDVVGLSVGL------VGTLFLVARIWDAINDPIMGWIVNNTRSRWGKFKPWILIGTLA   86 (473)
T ss_pred             cchhHHhHHHHHHHHHHHHHHHHhcCCCHHH------HHHHHHHHHHHHHHhhchheeehhcCCCCCCCcchhHhhhhHH
Confidence            344444555555666665 555667999999      999999999999999999999999    6698 5566667777


Q ss_pred             HHHHHHHHhccch------HHHHHHHHHHHhhhccchhh-HHHHHhhhc-cchhhhHHHHHHHHHHHHHHhHHHHhhhhh
Q 015847          122 VVIFNTLFGLSVN------FWMAVLTRFLLGSLNGLLGP-IKAYACEIF-REEHQALGLSTVSTAWGIGLIIGPALGGFL  193 (399)
Q Consensus       122 ~~~~~~~~~~~~~------~~~l~~~r~l~G~~~~~~~~-~~~~~~~~~-~~~~r~~~~~~~~~~~~~g~~~~p~i~~~l  193 (399)
                      .+++.+++...++      +..+++..++.+++.....+ ..++..|.. ++++|.+..+......++|+.+.+.+...+
T Consensus        87 ~~i~~~llf~~p~~~~~~~~~~~~~~~~l~~~~~t~~~ip~~al~~~lt~~~~eR~~l~~~~~~~~~ig~~~~~~~~~~~  166 (473)
T PRK10429         87 NSVVLFLLFSAHLFEGTAQYVFVCVTYILWGMTYTIMDIPFWSLVPTLTLDKREREQLVPYPRFFASLAGFVTAGFTLPF  166 (473)
T ss_pred             HHHHHHHHHcCCCCCccHHHHHHHHHHHHHHHHHHHHcchHHhhhHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7777655544321      33445555666776666554 588999998 589999999987777788777666655544


Q ss_pred             cCCCCCCCCcccccccccCCcchhhHHHHHHHHHHHH-HHHHhcccCCCCCCCCCCccchhhhhhhhhhhhhhhccccCC
Q 015847          194 AQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVT-IAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREA  272 (399)
Q Consensus       194 ~~~~~~~~~~~gw~~~f~~~~~~~~~~~~~~~~~~~~-~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  272 (399)
                      .+.       +|....  ..+|+....+.+++.++.. ...+..||.++....+.++++                +.+..
T Consensus       167 ~~~-------~g~~~~--~~g~~~~~~i~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~----------------~~~~~  221 (473)
T PRK10429        167 VNY-------VGGGDR--GFGFQMFTLVLIAFFIVSTIITLRNVHEVYSSDNQVSAEGS----------------HLTLK  221 (473)
T ss_pred             HHH-------hCCCch--hhhHHHHHHHHHHHHHHHHHHHHcCceecCCcccccccccc----------------CCCHH
Confidence            321       110000  1234444444444444433 333446665322111100000                00011


Q ss_pred             cccccccccchhHHHHHHHHHHHhhhhhHHHHHHHhhcCCcccCccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 015847          273 TPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILG  352 (399)
Q Consensus       273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~  352 (399)
                      ...+.+++||.++..+...++..........+.+.|....     .+ ++...+.+....+++.+++. ++.+++.||+|
T Consensus       222 ~~~~~~~~n~~~~~ll~~~~~~~~~~~~~~~~~~y~~~y~-----~~-~~~~~~~~~~~~~i~~ii~~-~~~~~l~~r~g  294 (473)
T PRK10429        222 DIVALIYKNDQLSCLLGMALAYNIASNIINGFAIYYFTYV-----IG-DADLFPYYLSYAGAANLVTL-ILFPRLVKSLS  294 (473)
T ss_pred             HHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhheeeEEEEE-----CC-CHHHHHHHHHHHHHHHHHHH-HHHHHHHHHcC
Confidence            1334567888888877777777666655555555443332     22 45556667777677787877 47899999999


Q ss_pred             chhHHHHHHHHHHHHHhHH
Q 015847          353 PIMVARIAGVLTIPLLTSY  371 (399)
Q Consensus       353 ~~~~~~~~~~~~~~~~~~~  371 (399)
                      +|+.+..+..+.+++.+.+
T Consensus       295 kk~~~~~~~~~~~~~~~~~  313 (473)
T PRK10429        295 RRILWAGASIFPVLSCGVL  313 (473)
T ss_pred             cHHHHHHHHHHHHHHHHHH
Confidence            9999887777655554443

>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]

Probab=99.77  E-value=1.2e-16  Score=146.52  Aligned_cols=200  Identities=17%  Similarity=0.231  Sum_probs=160.7

Q ss_pred             CCCChhHHHHHHHHHHHhhccccchhhhHHHHHHH--hccCccccchhhhhhHHHHHHHHHHHhhhhcccccccccCC-c
Q 015847           36 SGLPITELFSIWIIVLCTALPISSLFPFLYFMIKD--FQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGR-K  112 (399)
Q Consensus        36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~dr~Gr-r  112 (399)
                      ++.+|+.++...+..++.....+.+.+..-.+.++  .+.+.+.      .|++.++..++.+++++++|+++.|.++ |
T Consensus        29 ~~t~wrsi~l~~~~sfl~~v~~sI~~~s~wpYl~~lD~~A~~~f------fG~viaa~slg~~i~~liF~~Ws~k~~~~k  102 (488)
T KOG2325|consen   29 RKTNWRSIYLALLNSFLVAVQFSIYLTSMWPYLQKLDPTATATF------FGLVIAASSLGHAIFSLIFGIWSNKTGSVK  102 (488)
T ss_pred             cCCchHhHHHHHHHHHHHhhhheEEEeecchhhhhcCCCCCcch------hhHHHHHHHHHHHhcchhhcccccccCCcc
Confidence            45678888999999999999999988888777777  5555566      9999999999999999999999999997 8


Q ss_pred             hhhHHHHHHHHHHHHHH-hc---cc-hHHHHHHHHHHHhhhccchhhHHHHHhhhccchhhhHHHHHHHHHHHHHHhHHH
Q 015847          113 PVIIMGTASVVIFNTLF-GL---SV-NFWMAVLTRFLLGSLNGLLGPIKAYACEIFREEHQALGLSTVSTAWGIGLIIGP  187 (399)
Q Consensus       113 ~~l~~~~~~~~~~~~~~-~~---~~-~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p  187 (399)
                      ++++.|.++.++++++. ++   .+ ..+.++++|++.|+|.|......+|+++....++|.++++....+..+|..+||
T Consensus       103 ~Pli~s~ii~~~g~llY~~l~~~~~~~~y~mL~~R~l~Gvg~~n~a~lR~Y~a~~s~~~dR~rA~a~~~~~~vlg~ilGp  182 (488)
T KOG2325|consen  103 KPLIVSFLIAIIGNLLYLALAYVPNGVKYLMLVARILTGVGVGNFAVLRAYIADASTVEDRPRAFAATSGGFVLGIILGP  182 (488)
T ss_pred             cCHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHcCcCcccHHHHHHHHHhccCccchHHHHHHhhhHHHHHHHHhH
Confidence            99999999999999988 33   23 678899999999999999999999999999999999999999999999999999


Q ss_pred             HhhhhhcCCCCCCCCccccccc--ccCCcchhhHHHHHHHHHHHHHH-HHhcccCCCCCCCC
Q 015847          188 ALGGFLAQPAEKYPNLFSSESL--FGKFPYFLPCLCISLFAFGVTIA-AFWLPETLHRHNDD  246 (399)
Q Consensus       188 ~i~~~l~~~~~~~~~~~gw~~~--f~~~~~~~~~~~~~~~~~~~~~~-~~~~~e~~~~~~~~  246 (399)
                      .++..+....     .-|++..  .-.+-+..+.++++++.++.++. .++++|..+...++
T Consensus       183 ~~q~~f~~Lg-----~~G~~i~~~~~~n~YTap~w~m~i~~i~~~v~i~~~f~E~~~~~~~~  239 (488)
T KOG2325|consen  183 TIQLAFTPLG-----EKGFMILPGLIFNMYTAPAWLMAILWIIYIVIILFFFKEVYRGIIDK  239 (488)
T ss_pred             HHHHHHhhhc-----CCceEEcCcceEEecchHHHHHHHHHHHHHHHHHhheeecccCcccc
Confidence            9887776522     1222221  10234667778888888775544 56677776554333

>PF03825 Nuc_H_symport: Nucleoside H+ symporter

Probab=99.77  E-value=1.8e-16  Score=146.12  Aligned_cols=283  Identities=17%  Similarity=0.254  Sum_probs=206.5

Q ss_pred             HHHHHHHhhccccchhhhHHHHHHHhccCccccchhhhhhHHHHHHHHHHHhhhhcccccccccC-CchhhHHHHHHHHH
Q 015847           46 IWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYG-RKPVIIMGTASVVI  124 (399)
Q Consensus        46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~dr~G-rr~~l~~~~~~~~~  124 (399)
                      +....++.....+...|.++.+.++.|.|..|      +|.+.+...+..+++++++|.++||.+ +||.+.+..++.++
T Consensus         7 Ls~~~f~~f~~~G~~~p~~~~~L~~~G~s~~q------IG~l~a~~~~~~i~~~~~~g~~aDr~~~~~~~l~~~~l~~~~   80 (400)
T PF03825_consen    7 LSLMYFLYFFAYGAFLPYLPLYLESRGFSGTQ------IGILLAVGPLARIVSPPFWGAIADRFGSAKRILALLSLLSAL   80 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHH
Confidence            45556666777778889999999999999999      999999999999999999999999986 57888787777777


Q ss_pred             HHHHHhccchHHHHHHHHHHHhhhccchhhH-HHHHhhhccchhhhHHHHHHHHHHHHHHhHHHHhh-hhhcCCCCCCCC
Q 015847          125 FNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALG-GFLAQPAEKYPN  202 (399)
Q Consensus       125 ~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~i~-~~l~~~~~~~~~  202 (399)
                      ........++++.+++..++..+......|. .++..+...  ++++-.|-.....++|.+++.... +.+...      
T Consensus        81 ~~~~~~~~~~f~~~~~~~~l~~~~~~p~~pl~dsi~~~~~~--~~~~~YG~iRlwGSiGf~~~~~~~~~~~~~~------  152 (400)
T PF03825_consen   81 ALLLLAFSSSFWWLFVIMLLFSFFFSPTMPLSDSIALSYLG--DRGKDYGRIRLWGSIGFIVAALAFGGLLGGY------  152 (400)
T ss_pred             HHHHHHHhccHHHHHHHHHHHHHHHccHHHHHHHHHHHHcc--cccCCCCcchhhhhHHHHHHHHHHHHHHHhh------
Confidence            7777777888988888877777776666664 666666664  445667777777788887775542 333321      


Q ss_pred             cccccccccCCcchhhHHHHHHHHHHHHHHHHhcccCCCCCCCCCCccchhhhhhhhhhhhhhhccccCCcccccccccc
Q 015847          203 LFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKNW  282 (399)
Q Consensus       203 ~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  282 (399)
                       .++      ......+++.+...++.....+.+|+.+++++.+++.++                  ....+..+++|+|
T Consensus       153 -~~~------~~~~~~~~i~~~~~~ll~~~~l~lp~~~~~~~~~~~~~~------------------~~~~~~~~llk~~  207 (400)
T PF03825_consen  153 -LGI------SGTSLIFYIAAILSLLLAGFALFLPKTPPKRSAKESVKK------------------LLGLDALKLLKNP  207 (400)
T ss_pred             -hcc------ccccHHHHHHHHHHHHHHHHHHhCCCCccccccCCCccc------------------ccchHHHHHhcCc
Confidence             111      111122344444444444445667877633222211111                  1112335789999


Q ss_pred             hhHHHHHHHHHHHhhhhhHHHHHHHhhcCCcccCccc-cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHH
Q 015847          283 PLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLN-YSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAG  361 (399)
Q Consensus       283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  361 (399)
                      ++....+..++.......+.++.+.|+++      .| .+....+.+++...+..++.. +..+++.+|+|.++++.++.
T Consensus       208 ~~~~Fll~~~l~~~~~~~~~~f~~~yl~~------~gg~~~~~~g~~~~l~~~aEi~~f-~~~~~~~~r~g~~~ll~~a~  280 (400)
T PF03825_consen  208 RFLVFLLAAFLIGISHAAYYTFFSIYLQE------LGGYSGSTIGILWALGVVAEIPFF-FFSGRFLKRFGIKWLLLLAL  280 (400)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHH------cccchhhHHHHHHHHHHHHHHHHH-HHHHHHHHhcCHHHHHHHHH
Confidence            99998888888888899999999999887      45 777888888888888888887 48899999999999999999


Q ss_pred             HHHHHHHhHHhHH
Q 015847          362 VLTIPLLTSYPYI  374 (399)
Q Consensus       362 ~~~~~~~~~~~~~  374 (399)
                      +..++=..+++..
T Consensus       281 ~~~~vR~~l~a~~  293 (400)
T PF03825_consen  281 VAYAVRWLLYAYF  293 (400)
T ss_pred             HHHHHHHHHHHHh
Confidence            8888877777665

>PTZ00207 hypothetical protein; Provisional

Probab=99.77  E-value=8.6e-17  Score=153.20  Aligned_cols=129  Identities=13%  Similarity=0.160  Sum_probs=109.2

Q ss_pred             cchhhhHHHHHHHhccCccccchhhhhhHHHHHHHHHHHhhhhcccccccccCCchhhHHHHHHHHHHHHHHhcc-----
Q 015847           58 SSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLS-----  132 (399)
Q Consensus        58 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~-----  132 (399)
                      +.++.+.+.+.+++|++..+      .+++.++. .....++++.|+++||+|||+++.++.+++.++.++++++     
T Consensus        44 y~fsv~s~~L~~~lgls~~~------l~~i~svg-~~~g~~~lp~G~L~Dr~G~R~vllig~ll~~iG~ll~ala~~~~i  116 (591)
T PTZ00207         44 YAFNLISGAMQARYNLTQRD------LSTITTVG-IAVGYFLLPYSFIYDYLGPRPIFVLSMTVFCLGTLLFALTFQEVI  116 (591)
T ss_pred             HHHHHHHHHHHHHhCcCHHH------HHHHHHHH-HHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence            45566778899999999998      88888764 3445677789999999999999999999999999999987     


Q ss_pred             -chHHHHHHHHHHHhhhccchhh-HHHHHhhhccchhhhHHHHHHHHHHHHHHhH-HHHhhhhhc
Q 015847          133 -VNFWMAVLTRFLLGSLNGLLGP-IKAYACEIFREEHQALGLSTVSTAWGIGLII-GPALGGFLA  194 (399)
Q Consensus       133 -~~~~~l~~~r~l~G~~~~~~~~-~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~-~p~i~~~l~  194 (399)
                       ++++.+++.|++.|++.+...+ +...+.+++| ++||++.|+...+.++|.++ +++..+++.
T Consensus       117 ~~s~~~l~l~r~l~G~G~~~~~~~~~~~i~~~Fp-~~RG~a~Gi~~~~~gLGsaI~~~l~~~l~~  180 (591)
T PTZ00207        117 EGSVVRLSVYNGLMTLGCMLFDLGAVVTVLSVFP-SNRGAVVAIMKTFTGLGSAILGSIQLAFFS  180 (591)
T ss_pred             cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence             6899999999999999887766 4778889986 78999999999999999975 555555554

>PRK15462 dipeptide/tripeptide permease D; Provisional

Probab=99.75  E-value=9.4e-16  Score=143.80  Aligned_cols=149  Identities=16%  Similarity=0.262  Sum_probs=120.5

Q ss_pred             hHHHHHHHHHHHhhccccchhhhHHHH-HHHhccCccccchhhhhhHHHHHHHHHHHhhhhccccccccc-CCchhhHHH
Q 015847           41 TELFSIWIIVLCTALPISSLFPFLYFM-IKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRY-GRKPVIIMG  118 (399)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~dr~-Grr~~l~~~  118 (399)
                      +.+..++...+...+..+.....+|.+ .+++|.++.+      .+.+.+.+.....++.+++|+++||+ ||||+++++
T Consensus         9 ~~l~~l~~~~~~e~fs~Yg~~~~L~~yL~~~lgls~~~------a~~i~~~~~~~~~l~~ligG~LaDRilGrrr~iliG   82 (493)
T PRK15462          9 RAIYYVVALQIWEYFSFYGMRALLILYLTNQLKYDDNH------AYELFSAYCSLVYVTPILGGFLADKVLGNRMAVMLG   82 (493)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHH
Confidence            456666666677777777777788755 5678999998      99999999999999999999999999 999999999


Q ss_pred             HHHHHHHHHHHhccc-hHHHHHHHHHHHhhhccchhh-HHHHHhhhccch--hhhHHHHHHHHHHHHHHhHHHHhhhhhc
Q 015847          119 TASVVIFNTLFGLSV-NFWMAVLTRFLLGSLNGLLGP-IKAYACEIFREE--HQALGLSTVSTAWGIGLIIGPALGGFLA  194 (399)
Q Consensus       119 ~~~~~~~~~~~~~~~-~~~~l~~~r~l~G~~~~~~~~-~~~~~~~~~~~~--~r~~~~~~~~~~~~~g~~~~p~i~~~l~  194 (399)
                      .++..++.++++..+ +...+.+...+.+++.|...+ ..++++|.+|++  +|.+++++.....++|+.++|.+.+++.
T Consensus        83 ~il~~lg~lll~~~~~~~~~~~l~l~li~iG~G~~~~~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l~g~L~  162 (493)
T PRK15462         83 ALLMAIGHVVLGASEIHPSFLYLSLAIIVCGYGLFKSNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIACGYAQ  162 (493)
T ss_pred             HHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcccccccHHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHHHHHHHH
Confidence            999999887776543 223344444455566666666 488999999875  7999999999999999999999999998


Q ss_pred             C
Q 015847          195 Q  195 (399)
Q Consensus       195 ~  195 (399)
                      +
T Consensus       163 ~  163 (493)
T PRK15462        163 E  163 (493)
T ss_pred             h
Confidence            7

>PRK09848 glucuronide transporter; Provisional

Probab=99.74  E-value=1.3e-15  Score=144.39  Aligned_cols=286  Identities=17%  Similarity=0.126  Sum_probs=170.5

Q ss_pred             hhHHHHHHHHHHHhhccccchhhhHH-HHHHHhccCccccchhhhhhHHHHHHHHHHHhhhhccccccccc----CCchh
Q 015847           40 ITELFSIWIIVLCTALPISSLFPFLY-FMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRY----GRKPV  114 (399)
Q Consensus        40 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~dr~----Grr~~  114 (399)
                      +++.+.-.++.+..........++++ ++.+.+|++..+      +|.+.+...+..++..++.|+++||.    ||||.
T Consensus         7 ~~~~~~yg~g~~~~~~~~~~~~~~l~~y~~~~~gl~~~~------~g~~~~~~~~~~~~~~~~~G~l~Dr~~~~~Gr~~~   80 (448)
T PRK09848          7 WRTIVGYSLGDVANNFAFAMGALFLLSYYTDVAGVGAAA------AGTMLLLVRVFDAFADVFAGRVVDSVNTRWGKFRP   80 (448)
T ss_pred             HHHHHhhccchHHhHHHHHHHHHHHHHHHHHHcCCCHHH------HHHHHHHHHHHHHHhhhhheeeeecCCCCCcCchH
Confidence            33433333344444444445555554 566678999999      99999999999999999999999996    77765


Q ss_pred             h-HHHHHHHHHHHHHH-hc----cch--HHHHHHHHHHHhhhccchhh-HHHHHhhhcc-chhhhHHHHHHHHHH-----
Q 015847          115 I-IMGTASVVIFNTLF-GL----SVN--FWMAVLTRFLLGSLNGLLGP-IKAYACEIFR-EEHQALGLSTVSTAW-----  179 (399)
Q Consensus       115 l-~~~~~~~~~~~~~~-~~----~~~--~~~l~~~r~l~G~~~~~~~~-~~~~~~~~~~-~~~r~~~~~~~~~~~-----  179 (399)
                      . ..+.+...+..++. ..    .++  .+..++...+.+++.+...+ ..++..|..+ +++|.+..+.-..+.     
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~r~~~~~~r~~~~~~~~~  160 (448)
T PRK09848         81 FLLFGTAPLMIFSVLVFWVPTDWSHSSKVVYAYLTYMGLGLCYSLVNIPYGSLATAMTQQPQSRARLGAARGIAASLTFV  160 (448)
T ss_pred             HHHHHHHHHHHHHHHHHhCcCCCCcchHHHHHHHHHHHHHHHHHHhcccHhhhhhhhcCCHHHHHHHHHHHHHHHHHHHH
Confidence            5 55555444433332 21    112  22334445666777666655 4666676664 577888766655433     


Q ss_pred             HHHHhHHHHhhhhhcCCCCCCCCcccccccccCCcchhhHHHHHHHHHHH-HHHHHhcccCCCCCCCCCCccchhhhhhh
Q 015847          180 GIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGV-TIAAFWLPETLHRHNDDDDSCDVSYDALE  258 (399)
Q Consensus       180 ~~g~~~~p~i~~~l~~~~~~~~~~~gw~~~f~~~~~~~~~~~~~~~~~~~-~~~~~~~~e~~~~~~~~~~~~~~~~~~~~  258 (399)
                      .++..++|.+++...+.       .       ...|.....+.++++++. ++.....||+.+++.++.           
T Consensus       161 ~~~~~~~p~i~~~~g~~-------~-------~~~~~~~~~~~~v~~~~~~~~~~~~~~e~~~~~~~~~-----------  215 (448)
T PRK09848        161 CLAFLIGPSIKNSSPEE-------M-------VSVYHFWTIVLAIAGMVLYFICFKSTRENVVRIVAQP-----------  215 (448)
T ss_pred             HHHHHHHHHHHHhCCCc-------h-------hhhHHHHHHHHHHHHHHHHHHHHcCcEeccCCCccCC-----------
Confidence            35555666666543210       0       001111112222222222 222333455432211100           


Q ss_pred             hhhhhhhhccccCCcccccccccchhHHHHHHHHHHHhhhhhHHHHHHHhhcCCcccCccccchhhHHHHHHHHHHHHHH
Q 015847          259 SASAEVKEEEGREATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLV  338 (399)
Q Consensus       259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~  338 (399)
                                 ......+.+++||.++...+..++............+.|.++.     +|.++...+.......++.++
T Consensus       216 -----------~~~~~~~~l~~n~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~g~~~~~~~~~~~~~~~~~~~  279 (448)
T PRK09848        216 -----------SLKISLQTLKRNRPLFMLCIGALCVLISTFAVSASSLFYVRYV-----LNDTGLFTVLVLVQNLVGTVA  279 (448)
T ss_pred             -----------CHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHhhhheeeEeee-----cCChHHHHHHHHHHHHHHHHH
Confidence                       0111355688999998888887777777677766667666655     666665555444444555666


Q ss_pred             HHHHHHHHHHHHhcchhHHHHHHHHHHHHHhHHhH
Q 015847          339 FQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPY  373 (399)
Q Consensus       339 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  373 (399)
                      +. ++.+++.||+++|+.+.++.++.+++.+.+.+
T Consensus       280 ~~-~l~~~l~~r~g~~~~~~~g~~~~~i~~~~~~~  313 (448)
T PRK09848        280 SA-PLVPGMVARIGKKNTFLIGALLGTCGYLLFFW  313 (448)
T ss_pred             HH-HHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHH
Confidence            66 57889999999999999998887777666554

>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []

Probab=99.72  E-value=4.6e-16  Score=140.96  Aligned_cols=295  Identities=16%  Similarity=0.165  Sum_probs=180.5

Q ss_pred             hHHHHHHHHHHHhhccccchhhhHHHHHH-HhccCccccchhhhhhHHHHHHHHHHHhhhhcccccccccCCchhhHHHH
Q 015847           41 TELFSIWIIVLCTALPISSLFPFLYFMIK-DFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGT  119 (399)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~  119 (399)
                      +..+......+...+..+...|+.+.+.+ +.|++.++      +|.+.++..+...+.+|+.|.++||.|.||-++...
T Consensus         7 ~~~~~~s~~~f~~Ff~~gi~~pF~~iWL~~~~GLs~~~------iG~i~s~~~~~~l~~qp~~G~i~Dklg~kK~Ll~~i   80 (412)
T PF01306_consen    7 KNYWWLSLFYFFYFFIWGIFLPFFPIWLTQVAGLSGTE------IGIIFSAGSLFALLAQPVYGFISDKLGLKKHLLWFI   80 (412)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHH------HHHHHHHHHHHHHHTHHHHHHHHHHCTTCSHHHHHH
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHccccCCCHHH------HHHHHHHHHHHHHHHHHhHHHhcchhhhhHHHHHHH
Confidence            45666666777777778888999997776 48999999      999999999999999999999999999776655443


Q ss_pred             HHH--HHHHH-HHhcc----chHH-HHHHHHHHHhhhccchhhH-HHHHhhhccchhhhHHHHHHHHHHHHHHhHHHHhh
Q 015847          120 ASV--VIFNT-LFGLS----VNFW-MAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALG  190 (399)
Q Consensus       120 ~~~--~~~~~-~~~~~----~~~~-~l~~~r~l~G~~~~~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~i~  190 (399)
                      ...  ..+.+ ...+.    .|.+ ..+++-+..|+......|. -+++.+..  ++.+.-.|-.....++|.+++..++
T Consensus        81 ~~l~~l~~pff~~v~~pll~~n~~lg~iig~i~l~~~f~~~~~~~Ea~~er~s--r~~~feYG~~R~wGSig~ai~s~~~  158 (412)
T PF01306_consen   81 AILLLLFGPFFIYVFGPLLQSNFWLGAIIGGIYLGLVFNAGVPLSEAYAERVS--RRNGFEYGRARMWGSIGFAIASLLA  158 (412)
T ss_dssp             HHHHHTCHHHHHHTHHHHHHTT-HHHHHHTTTTTTTTTTTHHHHHHHHHHHHH--HHHSS-HHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHH--HHhcCCcchHHHHhhHHHHHHHHHh
Confidence            322  22222 22222    2222 1222222223322222332 33433332  3445567778888999999999999


Q ss_pred             hhhcCCCCCCCCcccccccccCCcchhhHHHHHHHHHHHHHHHHhcc-cCCCCCCCCCCccchhhhhhhhhhhhhhhccc
Q 015847          191 GFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLP-ETLHRHNDDDDSCDVSYDALESASAEVKEEEG  269 (399)
Q Consensus       191 ~~l~~~~~~~~~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~-e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  269 (399)
                      |.+.+                . +....+++..+.+++..+..+..+ +.+++.+.++...++.              ++
T Consensus       159 G~L~~----------------i-~p~~~fwi~s~~~~il~lll~~~~~~~~~~~~~~~~~~~~~--------------~~  207 (412)
T PF01306_consen  159 GILFN----------------I-NPNIIFWIASAAAIILLLLLLLLKPDVPPQAEVADALGAKK--------------DK  207 (412)
T ss_dssp             HHHHH----------------H-HHHHHHHHHHHHHHHHHHHHHSS---SSSSS-SSTTSSS------------------
T ss_pred             heeee----------------e-CccHHHHHHHHHHHHHHHHHHHcCCcCchhhhhhcccccCC--------------CC
Confidence            99985                1 122333444444444444333333 3222211111100000              00


Q ss_pred             cCCcccccccccchhHHHHHHHHHHHhhhhhHHHHHHHhhcCCcccCccccchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015847          270 REATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLER  349 (399)
Q Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~  349 (399)
                      ...++..+++|+|++|...+........+..+...++.|.......  .+.+....|++.+...+..++.. .+.+++.+
T Consensus       208 ~~~~~~~~l~k~~~fw~~~l~v~g~~~~Y~vfdqqf~~y~~~~f~~--~~~g~~~~G~l~s~~v~~E~~~m-~~~p~li~  284 (412)
T PF01306_consen  208 VSLKDVLSLFKMRNFWFFVLFVIGVAAIYDVFDQQFPIYFASFFQS--AGQGNQMYGYLWSVQVFLEALMM-FFSPWLIN  284 (412)
T ss_dssp             --HHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSS--HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
T ss_pred             CcHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--cccChhHHhHHHHHHHHHHHHHH-HHHHHHHH
Confidence            1112456789999999988877766666667666666666543221  45567789999999889998887 58999999


Q ss_pred             HhcchhHHHHHHHHHHHHHhHHhHHHHH
Q 015847          350 ILGPIMVARIAGVLTIPLLTSYPYIAML  377 (399)
Q Consensus       350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~  377 (399)
                      |+|.|+.++++..+..+=....++.++.
T Consensus       285 rig~k~~Lllag~i~~iRi~~~~~~~~~  312 (412)
T PF01306_consen  285 RIGAKNLLLLAGVIMAIRIIGSGFATNP  312 (412)
T ss_dssp             HH-HHHHHHHHHHHHHHHHHHHHT--SH
T ss_pred             hcChHhHHHHHHHHHHHHHHHHhhhcch
Confidence            9999999999988888877776655543

The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.

>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]

Probab=99.72  E-value=2.4e-15  Score=137.65  Aligned_cols=318  Identities=18%  Similarity=0.149  Sum_probs=218.1

Q ss_pred             CChhHHHHHHHHHHHhhccccchhhhHH-HHHHHhccCccccchhhhhhHHHHHHHHHHHhhhhcccccccc----cCCc
Q 015847           38 LPITELFSIWIIVLCTALPISSLFPFLY-FMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADR----YGRK  112 (399)
Q Consensus        38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~dr----~Grr  112 (399)
                      .+.++...-....+...........++. ++.+.+|++...      +|.+..+.-+--++..|+.|.++||    +||+
T Consensus         9 Ls~~eki~Yg~gd~~~~~~~~~~~~yLl~fYTdv~Gis~~~------aG~iflv~RiiDAi~DP~~G~i~D~t~~r~Grf   82 (467)
T COG2211           9 LSLKEKIGYGLGDFASNFAFGIVVLYLLFFYTDVFGLSAAL------AGTIFLVARIIDAITDPIMGFIVDRTRSRWGRF   82 (467)
T ss_pred             ccHHHHHhhcchhhHHHHHHHHHHHHHHHHHhcccCCcHHH------HHHHHHHHHHHHHHhcchheeeecccccccccc
Confidence            4445555445555556566666666666 555778999998      9999999999999999999999995    7875


Q ss_pred             -hhhHHHHHHHHHHHHHHhccch------HHHHHHHHHHHhhhccch-hhHHHHHhhhcc-chhhhHHHHHHHHHHHHHH
Q 015847          113 -PVIIMGTASVVIFNTLFGLSVN------FWMAVLTRFLLGSLNGLL-GPIKAYACEIFR-EEHQALGLSTVSTAWGIGL  183 (399)
Q Consensus       113 -~~l~~~~~~~~~~~~~~~~~~~------~~~l~~~r~l~G~~~~~~-~~~~~~~~~~~~-~~~r~~~~~~~~~~~~~g~  183 (399)
                       +.++.+.+..++.+.++..+++      ....++...+.+++.... .|-.++.+|..+ ++||.+..+.-+.+.++|.
T Consensus        83 RP~lL~g~ip~~i~~~l~F~~p~~~~~~k~~ya~vtY~l~~l~YT~vniPy~al~~~iT~d~~ER~~l~s~R~~~~~~g~  162 (467)
T COG2211          83 RPWLLWGAIPFAIVAVLLFITPDFSMTGKLIYALVTYMLLGLGYTLVNIPYGALGPEITQDPQERASLTSWRMVFASLGG  162 (467)
T ss_pred             cHHHHHHhHHHHHHHHHHHcCCCcccCcchHHHHHHHHHHHHHHHheeCchhhcchhhcCCHHHHHHHHHHHHHHHHHHH
Confidence             4566677888888888877663      444566678888886654 456888899886 7899999999999999998


Q ss_pred             hHHHHhhhhhcCCCCCCCCcccccccccCCcchhhHHHHHHHHHHHH-HHHHhcccCCCCCCCCCCccchhhhhhhhhhh
Q 015847          184 IIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVT-IAAFWLPETLHRHNDDDDSCDVSYDALESASA  262 (399)
Q Consensus       184 ~~~p~i~~~l~~~~~~~~~~~gw~~~f~~~~~~~~~~~~~~~~~~~~-~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~  262 (399)
                      .+...+...+....++-..         ..+|+....+.++++++.. .+++..+|+..+....++..+           
T Consensus       163 ~l~~~~~~plv~~~g~~~~---------~~g~~~~~~~~~vi~~i~~l~~~~~v~ER~~~~~~~~~~~~-----------  222 (467)
T COG2211         163 LLVAVLFPPLVKLFGGGDK---------ALGYQGTALVLGVIGVILLLFCFFNVKERVVETQPTKTGVK-----------  222 (467)
T ss_pred             HHHHHHHHHHHHHhCCCcc---------hhhHHHHHHHHHHHHHHHHHHHHHHhhcccCccccCccccc-----------
Confidence            7777666666652221111         2345555566666655544 345556776653322211000           


Q ss_pred             hhhhccccCCcccccccccchhHHHHHHHHHHHhhhhhHHHHHHHhhcCCcccCccccchhhHHHHHHHHHHHHHHHHHH
Q 015847          263 EVKEEEGREATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLS  342 (399)
Q Consensus       263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~  342 (399)
                            .+........++||+++..++...+.........+...+|.+..     +|.+.......+.....+.+++. +
T Consensus       223 ------~~~~~~~~~~~~Nrp~~~~l~~~l~~~~~~~i~~s~~~yy~~y~-----lg~~~l~~~~~~~~~~~~~l~~~-~  290 (467)
T COG2211         223 ------LKLKDSFLLIFKNRPLLLLLLMNLLLFIAFNIRGSIMVYYVTYV-----LGDPELFAYLLLLASGAGLLIGL-I  290 (467)
T ss_pred             ------ccHHHHHHHHHccchHHHHHHHHHHHHHHHHHHhhhhheeEEEE-----cCChHHHHHHHHHHHHHHHHHHH-H
Confidence                  01112334678999999888888887777777777777777666     67777777777666666666655 5


Q ss_pred             HHHHHHHHhcchhHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHhhh
Q 015847          343 LYPFLERILGPIMVARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVK  393 (399)
Q Consensus       343 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  393 (399)
                      +.+++.+|+|+|++..++.++..++.+.+.+.+........+...+..+..
T Consensus       291 ~~p~L~~~~gkk~~~~~~~~~~~i~~~~~~f~~~~~~~l~~~~~~i~~~g~  341 (467)
T COG2211         291 LWPRLVKKFGKKKLFLIGLLLLAVGYLLLYFTPAGSVVLIVVALIIAGVGT  341 (467)
T ss_pred             hHHHHHHHhchHHHHHHHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHh
Confidence            889999999999999999999999988887776333333333333333333

>PRK11462 putative transporter; Provisional

Probab=99.72  E-value=4.5e-15  Score=140.57  Aligned_cols=274  Identities=14%  Similarity=0.048  Sum_probs=171.2

Q ss_pred             HHHHhhccccchhhhHH-HHHHHhccCccccchhhhhhHHHHHHHHHHHhhhhcccccccc----cCCchhh-HHHHHHH
Q 015847           49 IVLCTALPISSLFPFLY-FMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADR----YGRKPVI-IMGTASV  122 (399)
Q Consensus        49 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~dr----~Grr~~l-~~~~~~~  122 (399)
                      +.+...........++. ++.+..|++...      +|.+..+.-+--++..|+.|.++||    +||||+. +++.+..
T Consensus        17 g~~~~~~~~~~~~~~l~~fyt~~~Gl~~~~------~g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp~il~g~i~~   90 (460)
T PRK11462         17 GDAASHIIFDNVMLYMMFFYTDIFGIPAGF------VGTMFLVARALDAISDPCMGLLADRTRSRWGKFRPWVLFGALPF   90 (460)
T ss_pred             chhhhhHHHHHHHHHHHHHHHHhhCCCHHH------HHHHHHHHHHHHHHHhhhheehhccCCCCCCCcchhHhHHHHHH
Confidence            33333444444454444 556778999998      9999999999999999999999995    7886554 5566777


Q ss_pred             HHHHHHHhccch------HHHHHHHHHHHhhhccchh-hHHHHHhhhcc-chhhhHHHHHHHHHHHHHHhHHHHhhhhhc
Q 015847          123 VIFNTLFGLSVN------FWMAVLTRFLLGSLNGLLG-PIKAYACEIFR-EEHQALGLSTVSTAWGIGLIIGPALGGFLA  194 (399)
Q Consensus       123 ~~~~~~~~~~~~------~~~l~~~r~l~G~~~~~~~-~~~~~~~~~~~-~~~r~~~~~~~~~~~~~g~~~~p~i~~~l~  194 (399)
                      +++.+++...++      ...+.+...+..++..... |-.++.+|..+ ++||.+..+....+..+|..+++.+...+.
T Consensus        91 ~i~~~llf~~p~~s~~~~~~y~~~~~~~~~~~~t~~~ipy~al~~~lt~d~~eRt~l~s~r~~~~~iG~~~~~~~~~plv  170 (460)
T PRK11462         91 GIVCVLAYSTPDLSMNGKMIYAAITYTLLTLLYTVVNIPYCALGGVITNDPTQRISLQSWRFVLATAGGMLSTVLMMPLV  170 (460)
T ss_pred             HHHHHHHHhCCCCCcchHHHHHHHHHHHHHHHHHHHhccHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            777766654442      3345555566677755544 45889999987 799999999999999999888887776655


Q ss_pred             CCCCCCCCcccccccccCCcchhhHHHHHHHHHHHHHH-HHhcccCCCCCCCCCCccchhhhhhhhhhhhhhhccccCCc
Q 015847          195 QPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIA-AFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREAT  273 (399)
Q Consensus       195 ~~~~~~~~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~-~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  273 (399)
                      +.       +|-+..  ..+|.....+.++++++.... ....+|.++.++++    .                  +...
T Consensus       171 ~~-------~g~~~~--~~g~~~~~~i~~ii~~i~~~i~~~~~kE~~~~~~~~----~------------------~~~~  219 (460)
T PRK11462        171 NL-------IGGDNK--PLGFQGGIAVLSVVAFMMLAFCFFTTKERVEAPPTT----T------------------SMRE  219 (460)
T ss_pred             HH-------hCCCch--hhhHHHHHHHHHHHHHHHHHHHHhcceeccCCCccC----C------------------CHHH
Confidence            42       110000  123444445555554444333 33345532211100    0                  0111


Q ss_pred             ccccccccchhHHHHHHHHHHHhhhhhHHHHHHHhhcCCcccCccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 015847          274 PKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGP  353 (399)
Q Consensus       274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~  353 (399)
                      ..+..++|+.++......++..............|....     .| ++...+.++....++.+++. ++.+++.||+++
T Consensus       220 ~l~~~~~Nk~~~~l~~~~~~~~~~~~~~~~~~~y~~~y~-----~g-~~~~~~~~l~~~~i~~iig~-~l~~~l~~r~gk  292 (460)
T PRK11462        220 DLRDIWQNDQWRIVGLLTIFNILAVCVRGGAMMYYVTWI-----LG-TPEVFVAFLTTYCVGNLIGS-ALAKPLTDWKCK  292 (460)
T ss_pred             HHHHHhCChHHHHHHHHHHHHHHHHHHHHhHhhhhhhhh-----cC-ChHHHHHHHHHHHHHHHHHH-HHHHHHHHHhCh
Confidence            345677888887766665555555444444444443332     23 23344556677777777777 588999999999


Q ss_pred             hhHHHHHHHHHHH
Q 015847          354 IMVARIAGVLTIP  366 (399)
Q Consensus       354 ~~~~~~~~~~~~~  366 (399)
                      |+....+..+..+
T Consensus       293 k~~~~~~~~~~~~  305 (460)
T PRK11462        293 VTIFWWTNALLAV  305 (460)
T ss_pred             HHHHHHHHHHHHH
Confidence            8887655444333

>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs)

Probab=99.71  E-value=8.3e-19  Score=166.87  Aligned_cols=313  Identities=16%  Similarity=0.211  Sum_probs=2.9

Q ss_pred             HHHHHHHHhhccccchhhhHHHHHHHhccCccccchhhhhhHHHHHHHHHHHhhhhcccccccccCCchhhHHHHHHHHH
Q 015847           45 SIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVI  124 (399)
Q Consensus        45 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~  124 (399)
                      .+++..+......+.....+..++++|+++..+      .|++.+.+-++..+..++..++.+|..|-|.+-+|.++.++
T Consensus         7 ~~~~~~~~q~~~~g~~~~~lttiErRF~l~S~~------~G~i~s~~di~~~~~~~~vsy~g~~~hrprwig~g~~~~~~   80 (539)
T PF03137_consen    7 FLCLLGLFQMMVSGYVNSSLTTIERRFGLSSSQ------SGLISSSYDIGSLVVVLFVSYFGGRGHRPRWIGIGALLMGL   80 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHH------HHHHHHHHHHHHHHHHHHHHHHhhhcCCcceeeecHHHHHH
Confidence            445555566666677778889999999999999      99999999999999999999999998888999999999999


Q ss_pred             HHHHHhccc--------------------------------------------------hHHHHHHHHHHHhhhccchhh
Q 015847          125 FNTLFGLSV--------------------------------------------------NFWMAVLTRFLLGSLNGLLGP  154 (399)
Q Consensus       125 ~~~~~~~~~--------------------------------------------------~~~~l~~~r~l~G~~~~~~~~  154 (399)
                      +++++++-+                                                  -+..++++.++.|+|.....+
T Consensus        81 g~~l~~lPhf~~~~y~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~t  160 (539)
T PF03137_consen   81 GSLLFALPHFLSGPYSYEEASNSNGNSSISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYT  160 (539)
T ss_dssp             -----------------------------------------------------------------------SSS------
T ss_pred             HHHHHhccHhhcCCCccccccccccccccccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCcc
Confidence            998877410                                                  135677888999999999888


Q ss_pred             H-HHHHhhhccchhhhHHHHHHHHHHHHHHhHHHHhhhhhcCCCCCCCCcc----c---ccccccCCcchhhHHHHHHHH
Q 015847          155 I-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLF----S---SESLFGKFPYFLPCLCISLFA  226 (399)
Q Consensus       155 ~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~i~~~l~~~~~~~~~~~----g---w~~~f~~~~~~~~~~~~~~~~  226 (399)
                      . .+|+-|..++++-+..+|+..+...+|.++|-++++.+.+..-.++..-    +   .+..| --.||..+++.+.+.
T Consensus       161 LG~tYiDDnv~~~~splYiGi~~~~~~lGPa~Gf~lg~~~L~~yvD~~~~~~~~~~i~p~dp~W-vGAWWLGfli~g~~~  239 (539)
T PF03137_consen  161 LGITYIDDNVSKKNSPLYIGILYAMSILGPALGFLLGSFCLRIYVDFPKVPPDGVGITPSDPRW-VGAWWLGFLICGILL  239 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ceeeeeccccccccCccchhhhhHHhhccHHHHHHHHHHHHhceeCCccccccCCCCCCCCccH-HHHHHHHHHHHHHHH
Confidence            6 9999999999999999999999999999999999998876322221110    1   11112 335788888888888


Q ss_pred             HHHHHHHHhcccCCCCCCCCCCccch---hhhhhhhhh--hhh-----hhccccCCcccccccccchhHHHHHHHHHHHh
Q 015847          227 FGVTIAAFWLPETLHRHNDDDDSCDV---SYDALESAS--AEV-----KEEEGREATPKKSLLKNWPLMSSIIVYCVFSL  296 (399)
Q Consensus       227 ~~~~~~~~~~~e~~~~~~~~~~~~~~---~~~~~~~~~--~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  296 (399)
                      ++..+..+.+|+..+...+.+++.+.   ..++.++..  ++.     .+..++.+...+++++||.+....+.......
T Consensus       240 ~l~aipl~~FPk~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~df~~~l~~Ll~Np~f~~~~la~~~~~~  319 (539)
T PF03137_consen  240 FLSAIPLFFFPKKLPGTSERQEEKESSERKEEDSDKDSFKDPKSKKSFGKSIKDFPKALKRLLTNPVFMCLILAGVFESF  319 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHcCCccCCCcccccchhhhhhcchhhhhhhcccccccccchhhhhhhHHHHHHHHhcChHHHHHHHHHHHHHH
Confidence            88777777777765544111111110   000000000  000     11223445667889999999999999999999


Q ss_pred             hhhhHHHHHHHhhcCCcccCccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc--chhHHHHHHHHHHHHHh
Q 015847          297 HDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILG--PIMVARIAGVLTIPLLT  369 (399)
Q Consensus       297 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~~~~~~~~~~~  369 (399)
                      ...++.++.|.|+++.     ++.++.+++.+.....+.....+.+++|++.+|++  .|+.+....+...++.+
T Consensus       320 ~~~G~~tF~pKylE~Q-----F~~sas~A~~l~G~v~ip~~~~G~llGG~ivkk~kl~~~~~~~~~~v~~~v~~~  389 (539)
T PF03137_consen  320 IVSGFATFLPKYLESQ-----FGLSASQASLLTGIVSIPGAALGILLGGYIVKKFKLSARGAAKFCIVVSIVSVI  389 (539)
T ss_dssp             ---------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHH-----hCCCHHHHHHHHhhhhcchhheehheEEEEEEEecCcHHHHHHHHHHHHHHHHH
Confidence            9999999999999887     99999999999888888666666679999999875  45555554444444433

Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.

>TIGR00788 fbt folate/biopterin transporter

Probab=99.71  E-value=3.5e-16  Score=148.27  Aligned_cols=298  Identities=13%  Similarity=0.030  Sum_probs=187.0

Q ss_pred             ChhHHHHHHHHHHHhhccccchhhh-HHHHHHHhccCccccchhhhhhHHHHHHHHHHHhhhhcccccccccC-----Cc
Q 015847           39 PITELFSIWIIVLCTALPISSLFPF-LYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYG-----RK  112 (399)
Q Consensus        39 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~dr~G-----rr  112 (399)
                      +...+..+...++..++. ...... .+.+.+++|++..+      ++...+...+...+-.+ +|+++||++     ||
T Consensus        24 ~~~~~~~~~~~y~~qGl~-~l~~~~~~~~l~~~lg~s~~~------i~~~~sl~~lpw~~K~l-~g~l~D~~~i~G~rRr   95 (468)
T TIGR00788        24 PRVVLAIGLQVLFVKGIA-GLMRLPLSPMLTDDLGLDGAR------YQRLVGLSSLGWALKPF-AGVMSDTFPLFGYTKR   95 (468)
T ss_pred             cchHHHHHHHHHHHhhHH-HHhhhhhhHHHHHhcCCCHHH------HHHHHHHHHHHHHHHHH-HHHHHHhcCCCCccch
Confidence            334555666677778887 544444 45666679999999      99999999999887555 999999998     77


Q ss_pred             hhhHHHHHHH-HHHHHHHhccchHHHHH-HHHHHHhhhccchhhH-HHHHhhhccchhhhHHHHH---HHHHHHHHHhHH
Q 015847          113 PVIIMGTASV-VIFNTLFGLSVNFWMAV-LTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLST---VSTAWGIGLIIG  186 (399)
Q Consensus       113 ~~l~~~~~~~-~~~~~~~~~~~~~~~l~-~~r~l~G~~~~~~~~~-~~~~~~~~~~~~r~~~~~~---~~~~~~~g~~~~  186 (399)
                      +.++++.++. ++.....+..++..... +..++.+++.+...++ .++..|..+ +++....+.   .....++|..+|
T Consensus        96 ~~l~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~a~~dv~~da~~~e~~~-~~~~~~~~~~s~~~~~~~~G~~vg  174 (468)
T TIGR00788        96 WYLVLSGLLGSAILYGLLPGKVSSAKVAAAFIFLAALAKALYDVLVDSLYSERIR-ESPSAGPSLVSWMWGASATGGLIS  174 (468)
T ss_pred             HHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHhHHHHHhhhhh-cCCCcCCCeeeHHHHHHHHHHHHH
Confidence            8888887766 34444444445544444 4778888888887774 999999998 555443333   333445899999


Q ss_pred             HHhhhhhcCCCCCCCCcccccccccCCcchhhHHHHHHHHHHHHHHHHhcccCCCCCCCCCCccchhhhhhhhhhhhhhh
Q 015847          187 PALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKE  266 (399)
Q Consensus       187 p~i~~~l~~~~~~~~~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~  266 (399)
                      +.++|.+.+       .++|+         ..+.+.++..++..+...+++|+++....+.++.+.....  .......+
T Consensus       175 ~~l~G~l~~-------~~~~~---------~~f~~~a~l~ll~~~~~~~~~E~~~~~~~~~~~~~~~~~~--~~~~~~~~  236 (468)
T TIGR00788       175 SLLGGPLLD-------KTLTR---------ILFLITAALLLLQLFVSNLSKERRAFVRPRIGTYLEMNMA--LLTLGVLA  236 (468)
T ss_pred             HHHHHHHHH-------hcCcc---------hHHHHHHHHHHHHHHHHHhcccccccccccccccchhhhh--hhhhhHHH
Confidence            999999987       44444         4446766666666555677788642111110000000000  00000000


Q ss_pred             ccccCCcccccccccchhHHHHHHHHH-HHhhhhhHHHHHHHhhcCCcccCccccchhhHHHHHHHHHHHHHHHHHHHHH
Q 015847          267 EEGREATPKKSLLKNWPLMSSIIVYCV-FSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYP  345 (399)
Q Consensus       267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~  345 (399)
                      ...+.....++.+++|.++...+..++ +.......   .+.++.   .....|+++.+.|......+++.+++.. ..+
T Consensus       237 ~~~~~~~~l~~~l~~~~i~~~l~fifl~~~~~~~~~---~~~f~~---~~~~lG~s~~~~G~~~~~~~v~~i~g~~-~~~  309 (468)
T TIGR00788       237 NVKVQILGLRGAIQLLEIAKPLIFIFLSYANLPGAS---GSVFCA---TTQCLPGGPSFSGMSKVVGNLGSLCGVG-GYD  309 (468)
T ss_pred             HHHHHHHHHHHHHhcHHHHHHHHHHHHHHhhcCCCC---ceeEEE---EcccCCCCcchhhhHHHHHHHHHHHHHH-HHH
Confidence            000011133445677888775555444 22221111   111111   1123899999999999999999999985 677


Q ss_pred             HHHHHhcchhHHHHHHHHHHHHHhH
Q 015847          346 FLERILGPIMVARIAGVLTIPLLTS  370 (399)
Q Consensus       346 ~l~~~~~~~~~~~~~~~~~~~~~~~  370 (399)
                      +..+|++.|+.+.++.++.+++.+.
T Consensus       310 ~~~~~~~~r~~l~~~~~l~~~~~~~  334 (468)
T TIGR00788       310 RFLKTFPYRLLFGVTTLLYTLSSLF  334 (468)
T ss_pred             HHHhhCCHHHHHHHHHHHHHHHHhC
Confidence            7778999999998888888776543

The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.

>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.70  E-value=2.2e-16  Score=150.42  Aligned_cols=314  Identities=16%  Similarity=0.196  Sum_probs=239.1

Q ss_pred             HHHHHHHHhhccccchhhhHHHHHHHhccCccccchhhhhhHHHHHHHHHHHhhhhcccccccccCCchhhHHHHHHHHH
Q 015847           45 SIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVI  124 (399)
Q Consensus        45 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~  124 (399)
                      .+.+..+...+....+...+..+.+.|+++.++      .|++.+.+-++..+...+..+..-|.-|-+.+-+|.+++++
T Consensus       101 ~l~~~~~~q~l~~~y~~s~IttiErRF~i~Ss~------sG~I~s~~dig~~l~i~fVsYfG~r~HrPr~Ig~G~~~m~l  174 (735)
T KOG3626|consen  101 LLSLAAFAQGLYVGYFNSVITTIERRFKISSSQ------SGLIASSYDIGNLLLIIFVSYFGSRGHRPRWIGIGLVLMGL  174 (735)
T ss_pred             HHHHHHHHHHhhhhhhhhhhhhhhhhcCCCCCc------ceeEeeecccchhhhhHhHHHhccccCccceeeechhHHHH
Confidence            455666777777778888889999999999999      99999999999999999999999999999999999999999


Q ss_pred             HHHHHhcc--------------------c-----------------------------h--HH-HHHHHHHHHhhhccch
Q 015847          125 FNTLFGLS--------------------V-----------------------------N--FW-MAVLTRFLLGSLNGLL  152 (399)
Q Consensus       125 ~~~~~~~~--------------------~-----------------------------~--~~-~l~~~r~l~G~~~~~~  152 (399)
                      +++++++-                    +                             +  ++ .++++.++.|+|....
T Consensus       175 gsll~alPHf~~~~y~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GIG~Tpi  254 (735)
T KOG3626|consen  175 GSLLFALPHFFSGPYEYELEVIKQSVENPSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGIGATPI  254 (735)
T ss_pred             HHHHHhChHHhcCcchhhhhhhhccccCCccccchhhccCCccccCCCCCcccccccCCchhHHHHHHHHHHhhcCCCCC
Confidence            99988741                    0                             0  23 5667789999999998


Q ss_pred             hhH-HHHHhhhccchhhhHHHHHHHHHHHHHHhHHHHhhhhhcCCCCCC-CCccc---ccccccCCcchhhHHHHHHHHH
Q 015847          153 GPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKY-PNLFS---SESLFGKFPYFLPCLCISLFAF  227 (399)
Q Consensus       153 ~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~i~~~l~~~~~~~-~~~~g---w~~~f~~~~~~~~~~~~~~~~~  227 (399)
                      .+. .+|+-|...+++-...+|+..+...+|.++|-++++++......+ ....+   -+..| --.||..|++.+.+.+
T Consensus       255 ~tlGisYiDDnvk~~~SplYlgi~~~~~~lGPaiGfllgS~~l~lYvD~~~~~~~it~~DPrW-IGAWWlGFLi~g~~~~  333 (735)
T KOG3626|consen  255 FTLGISYIDDNVKKKNSPLYLGILYSMAILGPAIGFLLGSFCLKLYVDFGLSPIGITPTDPRW-IGAWWLGFLICGALLL  333 (735)
T ss_pred             ccCCCccccccccccCCcHHHHHHHHHHHhhhHHHHHHHHHHHHeeeccccCCCCCCCCCcch-hhHHHHHHHHHHHHHH
Confidence            886 999999999999999999999999999999999999998643222 11111   11112 3358899999999999


Q ss_pred             HHHHHHHhcccCCCCCCCCCCccchhhhhhhhh----hhhhhhccccCCcccccccccchhHHHHHHHHHHHhhhhhHHH
Q 015847          228 GVTIAAFWLPETLHRHNDDDDSCDVSYDALESA----SAEVKEEEGREATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSE  303 (399)
Q Consensus       228 ~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  303 (399)
                      +..+.++++|+..++..++.+..+......++.    .....++.++.+...+++++||.+....+...+......++.+
T Consensus       334 ~~a~p~f~fPk~lp~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~ikdfp~s~~~ll~N~if~~~~l~~~~~~~~~~G~~t  413 (735)
T KOG3626|consen  334 FSAVPLFFFPKELPKSQKRKRARDLHVLKTESGGAKSDKTFGKKIKDFPKSIKRLLSNPIFMLVVLASVIESLAITGYIT  413 (735)
T ss_pred             HHHHHHHhCcccCccccccchhhhhcccccccccccCCcchhhhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhHHH
Confidence            988888888887665443211111110000000    0000111123345677889999999999999999999999999


Q ss_pred             HHHHhhcCCcccCccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc--chhHHHHHHHHHHHHHhH
Q 015847          304 IFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILG--PIMVARIAGVLTIPLLTS  370 (399)
Q Consensus       304 ~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~~~~~~~~~~~~  370 (399)
                      ++|.|+++.     +|.++..+..+.+..++.....+++++|++.+|+.  .|....+..+...+.++.
T Consensus       414 FlPKyLE~Q-----fg~sas~An~l~G~i~vp~~~~Gi~lGG~iikkfkl~~r~~a~~~~~~~~l~l~~  477 (735)
T KOG3626|consen  414 FLPKYLETQ-----FGISASLANILTGSIGVPAAAVGIFLGGLIIKKFKLSARGAAKFVIVCSVLSLLF  477 (735)
T ss_pred             hhHHHHHHH-----cCCCHHHHHHHhhhhhhhhhhhhhhccceeeeeecccHHHHHHHHHHHHHHHHHH
Confidence            999999988     99999999999999999888888889999999865  445555444444444433

>TIGR01272 gluP glucose/galactose transporter

Probab=99.69  E-value=4e-15  Score=133.34  Aligned_cols=217  Identities=14%  Similarity=0.093  Sum_probs=153.0

Q ss_pred             ccchHHHHHHHHHHHhhhccchhhH-HHHHhhhccchhhhHHHHHHHHHHHHHHhHHHHhhhhhcCCCCCCCCc-ccccc
Q 015847          131 LSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNL-FSSES  208 (399)
Q Consensus       131 ~~~~~~~l~~~r~l~G~~~~~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~i~~~l~~~~~~~~~~-~gw~~  208 (399)
                      ..++++.++++-++.|.|.+...+. ++++++..++|++.+.+++.+.++++|..++|.+++.+.......... .+-..
T Consensus         6 ~~~~~~~~l~~~f~~g~G~~~lq~~~n~~v~~~~~~~~~~~~l~~~~~~~~~G~~~gP~i~~~~i~~~~~~~~~~~~~~~   85 (310)
T TIGR01272         6 SQRYYVLFLGALFVLASGLTILQVAANPYVSILGPIETAASRLALTQAFNKLGTTVAPLFGGSLILSGAGDLSMQVATAN   85 (310)
T ss_pred             HhhHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCcchhhhhhhhh
Confidence            4578999999999999999998885 999999999999999999999999999999999999888421100000 00000


Q ss_pred             cccCCcchhhHHHHHHHHHHHHHHHHhc--ccCCCCCCCCCCccchhhhhhhhhhhhhhhccccCCcccccccccchhHH
Q 015847          209 LFGKFPYFLPCLCISLFAFGVTIAAFWL--PETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKNWPLMS  286 (399)
Q Consensus       209 ~f~~~~~~~~~~~~~~~~~~~~~~~~~~--~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  286 (399)
                      .. .+.|+.++++.+...++..+.+.+.  ||.++++.   ++...                 ++..+.++.+++|.++.
T Consensus        86 ~~-~~~~~~~yl~ia~~~~~~~i~~~~~~~p~~~~~~~---~~~~~-----------------~~~~~~~~~~~~~~~~l  144 (310)
T TIGR01272        86 AE-AAKVHTPYLLLAGALAVLAIIFAFLPLPELQEADV---ARVSS-----------------GDTTQKTSAFQFTHLVL  144 (310)
T ss_pred             HH-HHHHHHHHHHHHHHHHHHHHHHHHccCCCCCcccc---ccccc-----------------ccccchhhHHhhHHHHH
Confidence            00 1245666675555544433333333  44221110   00000                 00011234677888888


Q ss_pred             HHHHHHHHHhhhhhHHHHHHHhhcCCcccCccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHH
Q 015847          287 SIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIP  366 (399)
Q Consensus       287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  366 (399)
                      ..+..+++.....+...+++.|+.++   +.+|+++.+.+...+.+..+.++++ ++++++.||+++++.+.++..+..+
T Consensus       145 ~~~~~f~yvg~e~~~~~w~~~yl~~~---~~~g~s~~~a~~~~s~~~~~~~iGr-~~~~~l~~r~g~~~~l~~~~~l~~~  220 (310)
T TIGR01272       145 GALGIFVYVGAEVSAGSFLVNFLSDP---HALGLPEDQAAHFTAYTWGGAMVGR-FIGSAVMPMISQGRYLAFNAFLAVL  220 (310)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhc---ccCCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhCHHHHHHHHHHHHHH
Confidence            88888888889999999999999643   1168899999999999999999999 4999999999999988887777766


Q ss_pred             HHhHHh
Q 015847          367 LLTSYP  372 (399)
Q Consensus       367 ~~~~~~  372 (399)
                      +.++..
T Consensus       221 ~~~l~~  226 (310)
T TIGR01272       221 LSIGAA  226 (310)
T ss_pred             HHHHHH
Confidence            654443

Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.

>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=99.66  E-value=2.8e-14  Score=127.55  Aligned_cols=286  Identities=12%  Similarity=0.087  Sum_probs=189.4

Q ss_pred             HHHHHHHHhhccccchhhhHHHHHHHhccCccccchhhhhhHHHHHHHHHHHhhhhcccccccccCCchhhHHHHHHHHH
Q 015847           45 SIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVI  124 (399)
Q Consensus        45 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~  124 (399)
                      ...+..+.+.+....+.+...+...-|| +.+.      .-|...+|++.+....+++-|+.||+|-|...+++..+.++
T Consensus        49 ~~slL~~SN~~qWI~ya~i~n~~~~~Yg-s~~~------~~wlsmIym~v~vp~gf~~mw~ldk~GLR~a~llgt~ln~i  121 (480)
T KOG2563|consen   49 AFSLLNFSNGMQWIQYAPINNYVNSFYG-SSSA------ADWLSMIYMVVSVPFGFAAMWILDKFGLRTALLLGTVLNGI  121 (480)
T ss_pred             HHHHHHhcCcchheeehhHHHHHHHHhc-chHH------HHHHHHHHHHHHHHHhhHHHHhhcccchHHHHHHHHHHHHH
Confidence            4444555555555555666667777778 5555      88999999999999999999999999999999999999999


Q ss_pred             HHHHHhccc------hHH--HHHHHHHHHhhhccchhhH-HHHHhhhccchhhhHHHHHHHHHHHHHHhHHHHhhhhhcC
Q 015847          125 FNTLFGLSV------NFW--MAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQ  195 (399)
Q Consensus       125 ~~~~~~~~~------~~~--~l~~~r~l~G~~~~~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~i~~~l~~  195 (399)
                      +..+-..+.      .++  ....+..+.+.++-..... .-+..-||++++|..+..+-..+..+|.++|.++...+..
T Consensus       122 Ga~Ir~iss~p~v~~~f~~~l~~~Gq~iaa~Aq~Fim~lPskiA~~WF~~~qra~A~~~~v~~n~LGvavg~llppilV~  201 (480)
T KOG2563|consen  122 GAWIRLISSLPFVPPLFRRPLTHTGQSIAAAAQPFILGLPSKIAAVWFPPDQRAIATVLGVMGNPLGVAVGFLLPPILVP  201 (480)
T ss_pred             HHHHhhhccCccccccchhhhhHHhHHHHHHhhhHhhccccHHHHhhCCcchhhhhhhHHHhcchHHHHHHhhccceecC
Confidence            998766542      344  4556666666666665555 4566678999999999999999999999999999999987


Q ss_pred             CCCCCCCcccccccccCCcchhhHHHHHHHHHHHH-HHHHhcccCCCCCCCCCCccchhhhhhhhhhhhhhhccccCCcc
Q 015847          196 PAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVT-IAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATP  274 (399)
Q Consensus       196 ~~~~~~~~~gw~~~f~~~~~~~~~~~~~~~~~~~~-~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  274 (399)
                      +..+ .+...|.       ....++...+++.+.+ +..+..++.|+..+...+..+.               +.+-...
T Consensus       202 ~~~~-~~~~~~~-------~~~~f~~~~~l~~l~l~l~~~~~~~~P~tPps~s~~~~~---------------~~~f~~s  258 (480)
T KOG2563|consen  202 SSKD-SEDNSWL-------FFTLFLGVECLAALLLALVLFVFTKKPPTPPSASQAALQ---------------DASFPKS  258 (480)
T ss_pred             CCCC-cchhHHH-------HHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCchhHhhhh---------------cCcHHHH
Confidence            4421 1122222       1212343333333333 2333334433322221111100               1112346


Q ss_pred             cccccccchhHHHHHHHHHHHhhhhhHHHHHHHhhcCCcccCccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-
Q 015847          275 KKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGP-  353 (399)
Q Consensus       275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~-  353 (399)
                      .++.++|+++....+.+........+..+.+..-+..      -|++...+|.......++++++.+ +.+.+.||.+. 
T Consensus       259 i~~~~~n~~F~il~~~ygi~~g~F~~l~~~l~~~l~~------sgY~~~~aG~ig~l~iv~Gmlga~-~~gii~Dktk~f  331 (480)
T KOG2563|consen  259 IKSCFKNRQFIILAICYGIGLGLFNSLSTLLNLALCP------SGYEGVFAGYIGALMIVAGMLGAL-ASGIIADKTKKF  331 (480)
T ss_pred             HHHHHcCccHHHHHHHHhhhHHHHHHHHHHhhhcccc------ccCCccccchhHHHHHHHHHHHHH-HHHhhhhhhhhH
Confidence            6788999999888888877666666665554432222      456668889999998999999985 77888888665 


Q ss_pred             hhHHHHHHHHHHHH
Q 015847          354 IMVARIAGVLTIPL  367 (399)
Q Consensus       354 ~~~~~~~~~~~~~~  367 (399)
                      |....+......++
T Consensus       332 k~~~~v~~~~~~v~  345 (480)
T KOG2563|consen  332 KLTTLVLYLFALVG  345 (480)
T ss_pred             HHHHHHHHHHHHHH
Confidence            34444444444444

>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]

Probab=99.65  E-value=2.6e-14  Score=132.96  Aligned_cols=307  Identities=20%  Similarity=0.279  Sum_probs=198.0

Q ss_pred             HHHHHHHHhhccccchhhhHHHHHHHhccCccccchhhhhhHHHHHHHHHHHhhhhcccccccccCCchhhHHHHHHHHH
Q 015847           45 SIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVI  124 (399)
Q Consensus        45 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~  124 (399)
                      ...+..+..++......+..+.....++.+.... .....+.......+...+.++..|.++||+|||..+....+...+
T Consensus        26 ~~fl~~fa~~l~~~~~~~~~~~~~ct~~~~~~~~-~~~~~~~~~~~~~~~~~i~s~~iG~lSD~~grk~~L~~~~~~~~l  104 (463)
T KOG2816|consen   26 LLFLYMFSWGLSSTVMTNVILYLACTFGDDYQLE-NGLLLGVKQVTAGLLTLISSPLIGALSDRYGRKVVLLLPLFGTIL  104 (463)
T ss_pred             HHHHHHHHHHhcCcchhhhhhhhhcccccCccch-hhhhhhHHHHhhHHHHHHHHhhhHHhhhhhhhhhhHHHHHHHHHH
Confidence            3444445555555555555555555554443321 111133333344677788999999999999999999999998888


Q ss_pred             HHHHHhccchHHHHHHHHHHHhhhcc---chhhHHHHHhhhccchhhhHHHHHHHHHHHHHHhHHHHhhhhhcCCCCCCC
Q 015847          125 FNTLFGLSVNFWMAVLTRFLLGSLNG---LLGPIKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYP  201 (399)
Q Consensus       125 ~~~~~~~~~~~~~l~~~r~l~G~~~~---~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~i~~~l~~~~~~~~  201 (399)
                      ..+...+..  |++++   +.++..+   ......++++|....++|...+|+.+.....+..++|.+++.+.+      
T Consensus       105 ~~~~~~~~~--~~~~~---~~~l~g~~~~~~s~~~a~vadis~~~~R~~~~gll~~~~~~~~~~~p~~~~~~~~------  173 (463)
T KOG2816|consen  105 PALCLLFQG--YWFFL---LLGLSGGFSAIFSVGFAYVADISSEEERSSSIGLLSGTFGAGLVIGPALGGYLVK------  173 (463)
T ss_pred             hHHHHHHHH--HHHhh---hcccccchhhhhhhhhhheeeccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHH------
Confidence            887776655  33333   5555333   334459999999999999999999999999999999999999998      


Q ss_pred             CcccccccccCCcchhhHHHHHHHHHHHHH-HHHhcccCCCCCCCCCCccchhhhhhhhhhhhhhhccccCCcccccccc
Q 015847          202 NLFSSESLFGKFPYFLPCLCISLFAFGVTI-AAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLK  280 (399)
Q Consensus       202 ~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~-~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  280 (399)
                                ..+...++.+..+..++..+ ...++||+..++++++......  ..+  . ....+..+........-.
T Consensus       174 ----------~~~~a~~f~ia~~~~~~~~~y~~~~l~Esl~~~~~~~~~~~~~--~~~--~-~~~~~~~~~~~~~~~~~~  238 (463)
T KOG2816|consen  174 ----------FLGIALVFLIAAASGILSLLYMLLFLPESLQEKERSDATLREL--TPG--S-LDSSHVADAFQSLTKVGP  238 (463)
T ss_pred             ----------hcCchHHHHHHHHHHHHHHHHHhhccccccCcccccccccccc--CCC--c-ccchhhhhhhhhhcccCC
Confidence                      45566677777777766544 4677888876554432000000  000  0 000000011111112223


Q ss_pred             cchhHHHHHHHHHHHhhhh-hHHHHHHHhhcCCcccCccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHH
Q 015847          281 NWPLMSSIIVYCVFSLHDM-AYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARI  359 (399)
Q Consensus       281 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  359 (399)
                      +|..+.+....+....... ......+.|+..+     ++++..+.+.+.+..++...+++.+..+.+.+.++.++.+..
T Consensus       239 ~r~~l~l~l~~~~~~~~~~~~~~~~~~~yl~~~-----f~w~~~~~s~~~~~~~~~~~i~~l~~~~~l~~~l~~~~~i~l  313 (463)
T KOG2816|consen  239 DRLLLLLLLVAFLSSLPEAGGASDVLLLYLKAK-----FGWNKKEFSDLLSLVSILGIISQLLLLPLLSSILGEKRLISL  313 (463)
T ss_pred             CccchHHHHHHHHHHHHHhcCceeEEEEEEeee-----cCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhH
Confidence            3444443333333322222 2221234455554     899999999999999999999998888899999999999899


Q ss_pred             HHHHHHHHHhHHhHHHHHHHHHHH
Q 015847          360 AGVLTIPLLTSYPYIAMLSGFGLA  383 (399)
Q Consensus       360 ~~~~~~~~~~~~~~~~~~~~~~~~  383 (399)
                      |...-.+....+++.+.....+..
T Consensus       314 Gl~~~~~~~~~~af~~~~w~~~~~  337 (463)
T KOG2816|consen  314 GLLSEFLQLLLFAFATETWMMFAA  337 (463)
T ss_pred             HHHHHHHHHHHHHHhccchhhhHH
Confidence            999999999998887765554433

>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=99.65  E-value=4.8e-16  Score=129.90  Aligned_cols=291  Identities=14%  Similarity=0.121  Sum_probs=194.6

Q ss_pred             HHHHHHHHHHHhhccccchhhhHHHHHHHhccCccccchhhhhhHHHHHHHHHHHhhhhcccccccc-cCCchhhHHHHH
Q 015847           42 ELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADR-YGRKPVIIMGTA  120 (399)
Q Consensus        42 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~dr-~Grr~~l~~~~~  120 (399)
                      .+..+++..|.+++.+..-.....++.++.+++..+      ..++.+.++....+.+++.|++.|| +|-|..-++-+.
T Consensus        45 ~lv~mc~lgfgsyfcyd~p~alq~~fk~d~ni~~ak------ftLlYsvYSwPNvVlcffgGflidr~fgir~gtii~~~  118 (459)
T KOG4686|consen   45 ALVFMCLLGFGSYFCYDAPGALQIDFKLDSNIEYAK------FTLLYSVYSWPNVVLCFFGGFLIDRRFGIRLGTIILCI  118 (459)
T ss_pred             HHHHHHHhcccceeecCCchhhhhhhhcccccceee------eeeeeeeccCCCEEEeeecceeehhhhhhhHHHHHHHH
Confidence            344556666666777777777777888888888888      8999999999999999999999997 577776666666


Q ss_pred             HHHHHHHHHhc---cchHHHHHHHHHHHhhhccchhhH-HHHHhhhccchhhhHHHHHHHHHHHHHHhHHHHhhhhhcCC
Q 015847          121 SVVIFNTLFGL---SVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQP  196 (399)
Q Consensus       121 ~~~~~~~~~~~---~~~~~~l~~~r~l~G~~~~~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~i~~~l~~~  196 (399)
                      ...++.+.++.   .+.+|.+..+|++.|+|.-...++ ..+..-|+..|+.+.++|+......+|..+--.+.+++.+.
T Consensus       119 fv~~GqliFa~Ggi~~aFw~M~~GRF~FGIGgESlAVaQN~yav~wFKGKELn~vfGlqlSvAR~GstvNf~lm~~ly~~  198 (459)
T KOG4686|consen  119 FVFLGQLIFAAGGISHAFWTMLAGRFLFGIGGESLAVAQNKYAVYWFKGKELNFVFGLQLSVARLGSTVNFLLMPFLYDT  198 (459)
T ss_pred             HHHHHHHHHHhchHHHHHHHHHhhheeeccCchhhhhhhcceeEEEecCccccchhhHHHHHHHhhceeeeeecHHHHHH
Confidence            66777776654   689999999999999987666665 99999999999999999999999999998887777777763


Q ss_pred             CCCCCCcccccccccCCcchh---hHHHHHHHHHHHHHHHH---hcccCCCCCCCCCCccchhhhhhhhhhhhhhhcccc
Q 015847          197 AEKYPNLFSSESLFGKFPYFL---PCLCISLFAFGVTIAAF---WLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGR  270 (399)
Q Consensus       197 ~~~~~~~~gw~~~f~~~~~~~---~~~~~~~~~~~~~~~~~---~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (399)
                      .+.   .++      .-+-..   ...+....+...++...   +..+..++..++++           .       ...
T Consensus       199 ~~~---~~~------~~ghT~LG~~l~~~~~tc~~slical~lg~~D~rAerilh~e~-----------g-------~~G  251 (459)
T KOG4686|consen  199 MGR---MFP------GVGHTLLGLWLCFEVKTCKQSLICALSLGLSDDRAERILHLEE-----------G-------FLG  251 (459)
T ss_pred             HHH---hcc------cchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhhc-----------C-------ccc
Confidence            211   010      000000   00111111111111111   11111100000000           0       000


Q ss_pred             CCccccccc-ccchhHHHHHHHHHHHhhhhhHHHHHHHhhcCCcccCccccchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015847          271 EATPKKSLL-KNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLER  349 (399)
Q Consensus       271 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~  349 (399)
                      +..+..+.. -.|++|...+..+++....+-+.+.-|.+.++.     +|+|+..++.+.+.......+.. ++.+.++|
T Consensus       252 e~pkLtdv~~f~ppfw~~~iicv~yyva~fPFi~lg~~fF~~r-----fGlS~~~a~~i~s~vy~Isav~s-pvfg~i~D  325 (459)
T KOG4686|consen  252 EEPKLTDVNTFYPPFWVLVIICVLYYVAWFPFITLGPMFFQKR-----FGLSAVSAGNILSTVYGISAVLS-PVFGAISD  325 (459)
T ss_pred             CCcccccccccCccHHHHHHHHHHHHHHHHHHhhhhHHHHHHh-----hCCChhhccchhhhhhhhhhhhh-hhHHHhHh
Confidence            000111111 247889888888888888888888888888777     99999999998888877777777 58899999


Q ss_pred             HhcchhHHHHHH-HHHHHHHhHH
Q 015847          350 ILGPIMVARIAG-VLTIPLLTSY  371 (399)
Q Consensus       350 ~~~~~~~~~~~~-~~~~~~~~~~  371 (399)
                      |.|++-..+.+. +....+-..+
T Consensus       326 k~G~n~~wv~~a~~~tl~~H~~l  348 (459)
T KOG4686|consen  326 KYGFNLWWVASACILTLLGHSGL  348 (459)
T ss_pred             hhcceehhHHHHHHHHHHHhhhH
Confidence            999876655443 3334443333

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=99.63  E-value=1.1e-14  Score=139.47  Aligned_cols=174  Identities=15%  Similarity=0.241  Sum_probs=125.0

Q ss_pred             HHhhccccchhhhHHHHH-HHhccCccccchhhhhhHHHHHHHHHHHhhhhcccccccccCCchhhHHHHHHHHHHHHH-
Q 015847           51 LCTALPISSLFPFLYFMI-KDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTL-  128 (399)
Q Consensus        51 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~-  128 (399)
                      ++..........++|.+. +++|.+..+      .++..+...++..++.++.|+++||+|||+.+..+.++..+..+. 
T Consensus       260 ~~~~~~~~~~~~~~p~~l~~~~g~s~~~------~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~  333 (490)
T PRK10642        260 IATNVTYYMLLTYMPSYLSHNLHYSEDH------GVLIIIAIMIGMLFVQPVMGLLSDRFGRRPFVILGSVALFVLAIPA  333 (490)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHH
Confidence            333444455566777665 567888776      777888888999999999999999999999988887654433322 


Q ss_pred             --HhccchHHHHHHHHHHHhhhccchhh-HHHHHhhhccchhhhHHHHHHHHHHHHHHhHHHHhhhhhcCCCCCCCCccc
Q 015847          129 --FGLSVNFWMAVLTRFLLGSLNGLLGP-IKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFS  205 (399)
Q Consensus       129 --~~~~~~~~~l~~~r~l~G~~~~~~~~-~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~i~~~l~~~~~~~~~~~g  205 (399)
                        ...+++...+++++++.|++.+.... ...++.|.+|++.|+++++.......+++.++|.+.+++.+.         
T Consensus       334 ~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~p~~~Rg~~~g~~~~~~~~~g~~~p~i~g~l~~~---------  404 (490)
T PRK10642        334 FILINSNVIGLIFAGLLMLAVILNCFTGVMASTLPAMFPTHIRYSALAAAFNISVLVAGLTPTLAAWLVES---------  404 (490)
T ss_pred             HHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHH---------
Confidence              22345677788889888887655444 477888999999999999985444566678899999988762         


Q ss_pred             ccccccCCcchhhHHHHHHHHHHHHHHHHhcccCCCCCCC
Q 015847          206 SESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHND  245 (399)
Q Consensus       206 w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~  245 (399)
                            ..+|+.++.+..+.+++.++..+++||++++..+
T Consensus       405 ------~~~~~~~~~~~~~~~~i~~~~~~~~pes~~~~~~  438 (490)
T PRK10642        405 ------TQNLMMPAYYLMVVAVIGLITGVTMKETANRPLK  438 (490)
T ss_pred             ------hCCchHHHHHHHHHHHHHHHHHHHhccccCCCCC
Confidence                  1124445555566666666667778999876543

>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon

Probab=99.61  E-value=2e-13  Score=121.77  Aligned_cols=289  Identities=17%  Similarity=0.092  Sum_probs=181.3

Q ss_pred             HHHHhccCccccchhhhhhHHHHHHHHHHHhhhhcccccccccC-----CchhhHHH-HHHHHHHHHHHhc-----cc--
Q 015847           67 MIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYG-----RKPVIIMG-TASVVIFNTLFGL-----SV--  133 (399)
Q Consensus        67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~dr~G-----rr~~l~~~-~~~~~~~~~~~~~-----~~--  133 (399)
                      +..|++++..-      .+...+...+.. ...+.+|+.||+.+     ||..+++. ....+.+..+.++     +.  
T Consensus         6 MIvEL~vpA~l------v~~lval~~~~a-p~R~~~G~~SD~~~s~~G~rRtPyI~~G~~~~~~g~~~ap~a~~~l~~~~   78 (403)
T PF03209_consen    6 MIVELGVPAWL------VALLVALHYLVA-PLRVWFGHRSDTHPSILGWRRTPYIWGGTLLQAGGLAIAPFALLLLAESG   78 (403)
T ss_pred             HHHHhccHHHH------HHHHHHHHHHHH-HHHHHhccccccCcccCcCCchhhhHHHHHHHHHHHHHHHHHHHHHcccc
Confidence            45678887776      888888888775 46889999999999     88666554 5555555444443     12  


Q ss_pred             -----hH--H--HHHHHHHHHhhhccchhhH-HHHHhhhccchhhhHHHHHHHHHHHHHHhHHHHhhhhhcCCCCCCCCc
Q 015847          134 -----NF--W--MAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNL  203 (399)
Q Consensus       134 -----~~--~--~l~~~r~l~G~~~~~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~i~~~l~~~~~~~~~~  203 (399)
                           +.  +  ...+...+.|+|.+...+. .++++|..|+|+|+++.++...+.-+|.+++..+.+.+.+.       
T Consensus        79 ~~~~~~~~~g~~~a~l~F~l~G~G~~~s~T~~lALl~D~~~e~~R~~~v~ivw~Mli~G~iv~ai~~g~lL~~-------  151 (403)
T PF03209_consen   79 QQSSGPFWLGLALAALAFLLYGLGVHASGTSFLALLADLAPEERRPRVVAIVWVMLIVGIIVSAIVFGRLLDP-------  151 (403)
T ss_pred             cccccccHHHHHHHHHHHHHHHhhHhHhHHHHHHHHHhcCCHhhhhhhHHHHHHHHHHHHHHHHHHHHHHccc-------
Confidence                 12  2  2344557778887776665 99999999999999999999999999999999999998872       


Q ss_pred             ccccccccCCcchhhHHHHHHHHHHHHHHHHhcccCCCCCCCCCCccchhhhhhhhhhhhhhhccccCCcccccccccch
Q 015847          204 FSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKNWP  283 (399)
Q Consensus       204 ~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  283 (399)
                      ++-.-      ........+++.+...+...+-.|++..+..+.++++                +.+....++++..+|+
T Consensus       152 ~s~~r------L~~v~~~~a~i~~~l~~ia~wg~E~r~~~~~~~~~~~----------------~~~f~~a~~~~~~~~~  209 (403)
T PF03209_consen  152 FSPER------LIQVIQGVALIALLLNLIALWGQEPRRSRRAAAAERP----------------RPPFREAWRQVWASPQ  209 (403)
T ss_pred             cCHHH------HHHHHHHHHHHHHHHHHHHHHhcccCCcccccCCCCC----------------CccHHHHHHHHHhCCC
Confidence            11110      1111111122222222222222333322222111100                0111224556667777


Q ss_pred             hHHHHHHHHHHHhhhhhHHHHHHHhhcCCcccCccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHH
Q 015847          284 LMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVL  363 (399)
Q Consensus       284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  363 (399)
                      ........++.......-...     -+|+.-+-+|++..+...+....+.+..++....+.++.+|.++++...+++..
T Consensus       210 a~~f~~fl~l~t~a~~~QD~i-----LEPygg~Vfgmsv~eTT~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~a~~G~~~  284 (403)
T PF03209_consen  210 ARRFFVFLFLGTLAFFMQDVI-----LEPYGGEVFGMSVGETTRLTAFWGGGTLLGMLLAGFLLSRRLGKKRTAALGCLL  284 (403)
T ss_pred             hhHHHHHHHHHHHHHHhhHHH-----cCCchhHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHH
Confidence            776666655554444333333     345444459999999999999999999888865555566678888888899998


Q ss_pred             HHHHHhHHhHHHHHH-HHHHHHHHHHHHhhhhhc
Q 015847          364 TIPLLTSYPYIAMLS-GFGLAFLLNCASVVKNLL  396 (399)
Q Consensus       364 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~  396 (399)
                      .++++.++....... .......++..++..+.+
T Consensus       285 ~~~~f~lii~a~~~~~~~~~~~~~~l~G~g~G~f  318 (403)
T PF03209_consen  285 GALAFALIILAGPLGSPWLFRPGVFLLGLGNGLF  318 (403)
T ss_pred             HHHHHHHHHHHHhcccchHHHHHHHHHHHhhhHH
Confidence            888887776554432 223444445555544443

It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.

>TIGR00889 2A0110 nucleoside transporter

Probab=99.61  E-value=6.9e-15  Score=137.82  Aligned_cols=174  Identities=12%  Similarity=0.123  Sum_probs=126.4

Q ss_pred             chhhhHHHHHHHhccCcccc--chhhhhhHHHHHHHHHHHhhhhcccccccccCCchhhHHHHHHHHHHHHHHhccc---
Q 015847           59 SLFPFLYFMIKDFQIAKREE--DIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSV---  133 (399)
Q Consensus        59 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~---  133 (399)
                      ......+.+.++.|.++...  ......+...++..++..++.++.|+++||+|||+++..+.++..++..+.....   
T Consensus       226 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~i~~i~~~~~~g~l~dr~g~r~~l~~~~~~~~v~~~l~~~~~~~~  305 (418)
T TIGR00889       226 ITNIFGNGFLHEFGRNPEFADSFVVKNASIWMSLSQFSEIFFILTIPFFLKRFGIKKVMLLSLVAWALRFGFFAYGDPEY  305 (418)
T ss_pred             HHHHhHHHHHHHhcccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCcch
Confidence            34455566666776554210  0001178999999999999999999999999999999999998888876665532   


Q ss_pred             -hHHHHHHHHHHHhhhccchhhH-HHHHhhhccchhhhHHHHHHH-HHHHHHHhHHHHhhhhhcCCCCCCCCcccccccc
Q 015847          134 -NFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVS-TAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLF  210 (399)
Q Consensus       134 -~~~~l~~~r~l~G~~~~~~~~~-~~~~~~~~~~~~r~~~~~~~~-~~~~~g~~~~p~i~~~l~~~~~~~~~~~gw~~~f  210 (399)
                       +.+.+++.+++.|++.+...+. ..++.|.+|+++|++++|+.+ ...++|..+||.++|++.+..++. ..+||+.  
T Consensus       306 ~~~~~l~l~~~l~g~~~~~~~~~~~~~i~~~~p~~~~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g~~-~~~~~~~--  382 (418)
T TIGR00889       306 FGYALLFLSMIVYGCAFDFFNISGSVFVEKEVPVHIRASAQGLFTLMCNGFGSLLGYILSGVMVEKMFAY-GTFDWQT--  382 (418)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccc-cCCchHH--
Confidence             2456777889999988877775 889999999999999999997 678999999999999998832210 0123444  


Q ss_pred             cCCcchhhHHHHHHHHHHH-HHHHHhcccCCCC
Q 015847          211 GKFPYFLPCLCISLFAFGV-TIAAFWLPETLHR  242 (399)
Q Consensus       211 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~e~~~~  242 (399)
                             .+.+.++..++. ++..+++||+.+.
T Consensus       383 -------~f~~~~~~~~i~~~l~~~~~~~~~~~  408 (418)
T TIGR00889       383 -------MWLFFAGYIAILAVLFMIFFKYSHNA  408 (418)
T ss_pred             -------HHHHHHHHHHHHHHHHHHHhCCcccC
Confidence                   446665555543 4456667776443

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function

Probab=99.61  E-value=3.8e-13  Score=118.15  Aligned_cols=276  Identities=15%  Similarity=0.107  Sum_probs=176.4

Q ss_pred             HHHHhhccccchhhhHHHHHHHhccCccccchhhhhhHHHHHHHHHHHhhhhcccccccccCCchhhHHHHHHHHHHHHH
Q 015847           49 IVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTL  128 (399)
Q Consensus        49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~  128 (399)
                      .+.+...+....+|+.-.+.+++|.++.|      ++.+.........+..++.|.++||+|||+.-++.+++..++++.
T Consensus        42 vY~La~~aDWLQGpY~Y~LY~~yg~~~~q------Ia~Lf~~Gf~Ss~i~g~~~G~laD~~Grk~~cl~~cily~~scl~  115 (354)
T PF05631_consen   42 VYLLAMAADWLQGPYLYALYESYGFSEHQ------IAILFVAGFASSAIFGTFVGSLADRYGRKKACLLFCILYSLSCLT  115 (354)
T ss_pred             HHHHHHHHHHhhcchhHHHHHHcCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHH
Confidence            34445556677788888778899999999      999999999999999999999999999999999999999999975


Q ss_pred             HhccchHHHHHHHHHHHhhhccchhhH-HH-HHhhhc----cchhhhHHHHHHH-HHHHHHHhHHHHhhhhhcCCCCCCC
Q 015847          129 FGLSVNFWMAVLTRFLLGSLNGLLGPI-KA-YACEIF----REEHQALGLSTVS-TAWGIGLIIGPALGGFLAQPAEKYP  201 (399)
Q Consensus       129 ~~~~~~~~~l~~~r~l~G~~~~~~~~~-~~-~~~~~~----~~~~r~~~~~~~~-~~~~~g~~~~p~i~~~l~~~~~~~~  201 (399)
                      . ..++++.++++|++.|++......+ -+ ++.|.-    |++..+..++... ...++-.+.+..++-++.+..    
T Consensus       116 k-~~~~~~~L~~GRvlgGiaTSLLfS~FEsW~V~Eh~~~g~~~~~L~~tF~~~tf~~n~~vAI~aGv~a~~l~~~~----  190 (354)
T PF05631_consen  116 K-HSSNYPVLLLGRVLGGIATSLLFSAFESWMVHEHNKRGFPQEWLSDTFSLATFFGNGVVAIGAGVVANVLADWF----  190 (354)
T ss_pred             H-hccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHh----
Confidence            4 5688999999999999998887664 44 455653    3333333333333 223344445555555555511    


Q ss_pred             CcccccccccCCcchhhHHHHHHHHHHHHHHH-HhcccCCCCCCCCCCccchhhhhhhhhhhhhhhccccCCcccccccc
Q 015847          202 NLFSSESLFGKFPYFLPCLCISLFAFGVTIAA-FWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLK  280 (399)
Q Consensus       202 ~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~-~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  280 (399)
                                ..+...||.....+.++..+.+ ..-+|......++.+..+.                  .....+.+.+
T Consensus       191 ----------~~g~vaPF~~a~~~l~~~~~~I~~~W~ENyg~~~~~~~~~~~------------------~~~a~~~i~~  242 (354)
T PF05631_consen  191 ----------GFGPVAPFDAAIVLLAVAAVLILKTWPENYGDTSSSSSLSGS------------------FREAWRAILS  242 (354)
T ss_pred             ----------CCCCcchHHHHHHHHHHHHHHHHhcccccCCCcccccchHHH------------------HHHHHHHHHc
Confidence                      2223556666666655544443 3345654432221111110                  0113455778


Q ss_pred             cchhHHHHHHHHHHHhhhhhHHHHHHHhhcCCcccCccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHH
Q 015847          281 NWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIA  360 (399)
Q Consensus       281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  360 (399)
                      ||+++.+.+...++-.....+.     ++.+|.... .+ ...-.|++++......++++.+......++......+...
T Consensus       243 d~ril~LG~~qslFE~smy~FV-----flWtPaL~~-~~-~~~P~GlIFssFM~a~MlGS~lf~~l~s~~~~~e~~l~~v  315 (354)
T PF05631_consen  243 DPRILLLGLIQSLFEGSMYLFV-----FLWTPALDP-DD-EELPLGLIFSSFMVAMMLGSSLFSRLLSKSLRPESLLRYV  315 (354)
T ss_pred             CchhHHHHHHHHHHHHHHHHhe-----eeeeceecC-CC-CCCCchHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence            8999888888777766655442     233333221 11 2334799999999999999863334455555555555555


Q ss_pred             HHHHHHHHhH
Q 015847          361 GVLTIPLLTS  370 (399)
Q Consensus       361 ~~~~~~~~~~  370 (399)
                      ..+.++++.+
T Consensus       316 ~~~aa~~l~~  325 (354)
T PF05631_consen  316 FAVAAVSLAI  325 (354)
T ss_pred             HHHHHHHHHH
Confidence            5555544444

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=99.60  E-value=1.3e-14  Score=142.56  Aligned_cols=140  Identities=14%  Similarity=0.105  Sum_probs=117.1

Q ss_pred             hHHHHHHHHHHHhhhhcccccccccCCchhhHHHHHHHHHHHHHHhccchHHHHHHHHHHHhhhccchhh-HHHHHhhhc
Q 015847           85 GYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGP-IKAYACEIF  163 (399)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~-~~~~~~~~~  163 (399)
                      .+...+..++.+++.++.|+++||+|||++++++.++.++++++.++.++...+++.+++.|++.+...+ ..++++|++
T Consensus       598 ~~~~~l~~l~~i~G~il~g~L~Dr~GRr~~l~~~~~lsai~~ll~~~~~s~~~ll~~~~l~g~~~~~~~~~~~a~~aEl~  677 (742)
T TIGR01299       598 YFVNFLGTLAVLPGNIVSALLMDKIGRLRMLAGSMVLSCISCFFLSFGNSESAMIALLCLFGGLSIAAWNALDVLTVELY  677 (742)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            4445667788999999999999999999999999999999999998888888888888888886555555 599999999


Q ss_pred             cchhhhHHHHHHHHHHHHHHhHHHHhhhhhcCCCCCCCCcccccccccCCcchhhHHHHHHHHHHHHHHHHhcccCCC
Q 015847          164 REEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLH  241 (399)
Q Consensus       164 ~~~~r~~~~~~~~~~~~~g~~~~p~i~~~l~~~~~~~~~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~  241 (399)
                      |.++|++++|+.+....+|.++||.+++.+.+                . ....++++.+++.++..+...++||+..
T Consensus       678 Pt~~Rgta~Gi~~~~~rlGaiigp~i~g~L~~----------------~-~~~~pf~i~a~~lll~~ll~~~LPET~~  738 (742)
T TIGR01299       678 PSDKRATAFGFLNALCKAAAVLGILIFGSFVG----------------I-TKAAPILFASAALACGGLLALKLPDTRG  738 (742)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------h-hhHHHHHHHHHHHHHHHHHHHhCCCCcc
Confidence            99999999999999999999999999998875                1 1345667777666766666777888764

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>PRK15011 sugar efflux transporter B; Provisional

Probab=99.58  E-value=4.5e-14  Score=131.57  Aligned_cols=157  Identities=15%  Similarity=0.196  Sum_probs=122.4

Q ss_pred             chhhhHHHH-HHHhccCccccchhhhhhHHHHHHHHHHHhhhhcccccccccCCchhhHHHHHHHHHHHHHHhccchHHH
Q 015847           59 SLFPFLYFM-IKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWM  137 (399)
Q Consensus        59 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~  137 (399)
                      ......|.+ .+++|.+..+      .+++.+...++..++.++.|+++||+|||+.+..+.+...+........++.+.
T Consensus       234 ~~~~~~p~~l~~~~~~~~~~------~g~~~~~~~~~~i~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  307 (393)
T PRK15011        234 LYIINMPLFIINELHLPEKL------AGVMMGTAAGLEIPTMLIAGYFAKRLGKRFLMRVAAVAGVCFYAGMLMAHSPAI  307 (393)
T ss_pred             HHHHHHHHHHHHHcCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence            344556644 5678998888      888888877888889999999999999999888777666655555555677888


Q ss_pred             HHHHHHHHhhhccchhhH-HHHHhhhccchhhhHHHHHHHHHHHHHHhHHHHhhhhhcCCCCCCCCcccccccccCCcch
Q 015847          138 AVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYF  216 (399)
Q Consensus       138 l~~~r~l~G~~~~~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~i~~~l~~~~~~~~~~~gw~~~f~~~~~~  216 (399)
                      +++.+++.+++.+...+. ..+..|.+|+ +|++++++++....+|..++|.++|.+.+                .++|+
T Consensus       308 ~l~~~~l~~~~~g~~~~~~~~~~~~~~p~-~~g~~~~~~~~~~~lg~~~g~~l~G~i~~----------------~~g~~  370 (393)
T PRK15011        308 LLGLQLLNAIYIGILGGIGMLYFQDLMPG-QAGSATTLYTNTSRVGWIIAGSLAGIVAE----------------IWNYH  370 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCCC-CcchHHHHHHHHHHHHHHHHHHHHHHHHH----------------HhhhH
Confidence            888888888876665553 6778898885 59999999988899999999999999988                34455


Q ss_pred             hhHHHHHHHHHHHHHHHHhccc
Q 015847          217 LPCLCISLFAFGVTIAAFWLPE  238 (399)
Q Consensus       217 ~~~~~~~~~~~~~~~~~~~~~e  238 (399)
                      .++.+..++.++.++..++.||
T Consensus       371 ~~~~~~~~~~~~~~~~~~~~~~  392 (393)
T PRK15011        371 AVFWFALVMIIATLFCLLRIKD  392 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHhhcC
Confidence            5557777777777777777665

>TIGR00880 2_A_01_02 Multidrug resistance protein

Probab=99.57  E-value=1.7e-14  Score=113.60  Aligned_cols=135  Identities=33%  Similarity=0.576  Sum_probs=111.2

Q ss_pred             HHHHHHHHHhhhhcccccccccCCchhhHHHHHHHHHHHHHHhccchHHHHHHHHHHHhhhccchhhH-HHHHhhhccch
Q 015847           88 GSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREE  166 (399)
Q Consensus        88 ~~~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~-~~~~~~~~~~~  166 (399)
                      .+.+.++..+++++.|++.||+|||+.+..+.....++.+.....++.+.+.+.+++.|++.+...+. .+++.|.+|++
T Consensus         4 ~~~~~~~~~~~~~~~g~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~   83 (141)
T TIGR00880         4 LAGYALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSSNITVLIIARFLQGFGAAFALVAGAALIADIYPPE   83 (141)
T ss_pred             EEeehhHHHHHHhhHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHCChh
Confidence            44566788889999999999999999999999999999888888899999999999999998877775 89999999999


Q ss_pred             hhhHHHHHHHHHHHHHHhHHHHhhhhhcCCCCCCCCcccccccccCCcchhhHHHHHHHHHHHHHH-HHhccc
Q 015847          167 HQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIA-AFWLPE  238 (399)
Q Consensus       167 ~r~~~~~~~~~~~~~g~~~~p~i~~~l~~~~~~~~~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~-~~~~~e  238 (399)
                      +|++.++..+....+|..++|.+++.+.+       ..+|         +..+.+.+...++..+. .+..||
T Consensus        84 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-------~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~  140 (141)
T TIGR00880        84 ERGVALGLMSAGIALGPLLGPPLGGVLAQ-------FLGW---------RAPFLFLAILALAAFILLAFLLPE  140 (141)
T ss_pred             hhhHHHHHHHHhHHHHHHHhHHhHHHHhc-------ccch---------HHHHHHHHHHHHHHHHHHhhcCCC
Confidence            99999999999999999999999999987       3344         44446655555554443 333444

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=99.57  E-value=4.8e-14  Score=132.09  Aligned_cols=134  Identities=21%  Similarity=0.275  Sum_probs=114.9

Q ss_pred             cccchhhhHHHHHHHhccCccccchhhhhhHHHHHHHHHHHhhhhcccccccccCCchhhHHHHHHHHHHHHHHhccchH
Q 015847           56 PISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNF  135 (399)
Q Consensus        56 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~  135 (399)
                      .........|.+.++.|.+..+      .+...+...++..++.++.|+++||+|||+.+..+.+...++.+...+.++.
T Consensus       235 ~~~~~~~~~p~~~~~~g~s~~~------~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~  308 (406)
T PRK11551        235 VLYFLLNWLPSLLVGQGLSRSQ------AGLVQIAFNIGGALGSLLIGALMDRLRPRRVVLLIYAGILASLAALAAAPSF  308 (406)
T ss_pred             HHHHHHHHHHHHHHhCCCChhh------hhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcCcH
Confidence            3344455678888888999888      9999999999999999999999999999999988777777777777777788


Q ss_pred             HHHHHHHHHHhhhccchhh-HHHHHhhhccchhhhHHHHHHHHHHHHHHhHHHHhhhhhcC
Q 015847          136 WMAVLTRFLLGSLNGLLGP-IKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQ  195 (399)
Q Consensus       136 ~~l~~~r~l~G~~~~~~~~-~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~i~~~l~~  195 (399)
                      +.+.+..++.|++.+...+ ..++..|.+|+++|++++|+.+....+|..++|.++|.+.+
T Consensus       309 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~  369 (406)
T PRK11551        309 AGMLLAGFAAGLFVVGGQSVLYALAPLFYPTQVRGTGVGAAVAVGRLGSMAGPLLAGQLLA  369 (406)
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHHHcchhhhhhhhhHHHHhhhHHHHHHhhhHhhhhc
Confidence            7777777888887655555 48899999999999999999999999999999999999987

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=99.56  E-value=7.9e-14  Score=130.32  Aligned_cols=160  Identities=19%  Similarity=0.165  Sum_probs=126.2

Q ss_pred             cchhhhHHHHHHHhccCccccchhhhhhHHHHHHHHHHHhhhhcccccccccCCchhhHHHHHHHHHHHHHHhccchHHH
Q 015847           58 SSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWM  137 (399)
Q Consensus        58 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~  137 (399)
                      ......++.+.++.|.  .+      .++..+.+.++..++.++.|++.||+|||+.+..+..+.+++.++..+.++.+.
T Consensus       233 ~~~~~~~~~~~~~~~~--~~------~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  304 (399)
T PRK05122        233 GTIATFITLYYAARGW--DG------AALALTLFGVAFVGARLLFGNLINRLGGLRVAIVSLLVEILGLLLLWLAPSPWM  304 (399)
T ss_pred             HHHHHHHHHHHHHccc--cc------chHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhccHHH
Confidence            3444556655566665  33      566677888888999999999999999999999998888888888888888888


Q ss_pred             HHHHHHHHhhhccchhhH-HHHHhhhccchhhhHHHHHHHHHHHHHHhHHHHhhhhhcCCCCCCCCcccccccccCCcch
Q 015847          138 AVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYF  216 (399)
Q Consensus       138 l~~~r~l~G~~~~~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~i~~~l~~~~~~~~~~~gw~~~f~~~~~~  216 (399)
                      +++..++.|++.+...+. .....|.+|+++|+++.++++....+|..++|.+.|.+.+                .++|+
T Consensus       305 ~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~----------------~~g~~  368 (399)
T PRK05122        305 ALIGAALTGFGFSLVFPALGVEAVKRVPPQNRGAALGAYSVFLDLSLGITGPLAGLVAS----------------WFGYP  368 (399)
T ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------HcCHH
Confidence            888899999988776664 7778899999999999999999999999999999999987                33444


Q ss_pred             hhHHHHHHHHHHHHHHHHhcccCCC
Q 015847          217 LPCLCISLFAFGVTIAAFWLPETLH  241 (399)
Q Consensus       217 ~~~~~~~~~~~~~~~~~~~~~e~~~  241 (399)
                      ..+...+++.++..+....++++++
T Consensus       369 ~~~~~~~~~~~~~~~~~~~~~~~~~  393 (399)
T PRK05122        369 SIFLAAALAALLGLALTWLLYRRAP  393 (399)
T ss_pred             HHHHHHHHHHHHHHHHHHHhccccc
Confidence            4557776666666666555555443

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions

Probab=99.56  E-value=4.4e-12  Score=119.42  Aligned_cols=257  Identities=18%  Similarity=0.152  Sum_probs=176.1

Q ss_pred             hhhhHHHHHHHHHHHhhhhcccccccccCCchhhHHH-HHHHHHHHHHHhcc-ch-HHHHHHHHHHHhhhccchhhH-HH
Q 015847           82 SYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMG-TASVVIFNTLFGLS-VN-FWMAVLTRFLLGSLNGLLGPI-KA  157 (399)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~G~l~dr~Grr~~l~~~-~~~~~~~~~~~~~~-~~-~~~l~~~r~l~G~~~~~~~~~-~~  157 (399)
                      .+.++..++..+..++..|+.|.++|+-|+||.++.. ..+..+++.++.+. ++ ++...+..++.-++.+...+. .+
T Consensus        70 s~~~~~~sis~l~~all~P~lGa~aD~~~~Rk~~l~~~~~~~~~~~~~l~~v~~~~~~~~~~l~iia~v~~~~~~vfyna  149 (477)
T PF11700_consen   70 SLWLYANSISGLLQALLAPFLGAIADYGGRRKRFLLIFTLLGVLATALLWFVSPGQWWLALVLFIIANVGYEASNVFYNA  149 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHcccccchHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3467888899999999999999999999977665544 45555566665553 33 333334444444565555554 99


Q ss_pred             HHhhhccchhh--------------------------hHHHHHHHHHHHHHHhHHHHhhhhhcCCCCCCCCccccccccc
Q 015847          158 YACEIFREEHQ--------------------------ALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFG  211 (399)
Q Consensus       158 ~~~~~~~~~~r--------------------------~~~~~~~~~~~~~g~~~~p~i~~~l~~~~~~~~~~~gw~~~f~  211 (399)
                      ++.|..+++++                          ++..+.-.....+|+.+.-.+.-.+....+..        .-.
T Consensus       150 ~LP~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vS~~G~a~Gy~G~~v~l~i~l~~~~~~~~~--------~~~  221 (477)
T PF11700_consen  150 YLPDLARPEPRVRAAREPSANGNISDSEYEAVDSLTRGRVSGLGWALGYIGGLVALLISLLLVISPGST--------ASN  221 (477)
T ss_pred             HhHhhcCCChhhhhhhhhhccCCCChhhhhhHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHcCCCc--------ccc
Confidence            99999998888                          88888888888888888777766654322110        000


Q ss_pred             CCcchhhHHHHHHHHHH-HHHHHHhcccCCCCCCCCCCccchhhhhhhhhhhhhhhccccCCcccccccccchhHHHHHH
Q 015847          212 KFPYFLPCLCISLFAFG-VTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKNWPLMSSIIV  290 (399)
Q Consensus       212 ~~~~~~~~~~~~~~~~~-~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  290 (399)
                      .++.+..+.+.++..++ .+...+++||.++....++... ......+           +.....++..|.|+....++.
T Consensus       222 ~~~~r~~~~~~a~ww~vfsiP~~~~~~~~~~~~~~~~~~~-~~~~g~~-----------~l~~t~k~~~~~~~~~~fLia  289 (477)
T PF11700_consen  222 TWAIRVAFLIVALWWLVFSIPLFLWLPDRPGPRPLPSGSS-YLRFGFK-----------RLWRTFKEIRKLRQLFLFLIA  289 (477)
T ss_pred             chhhhHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCcchh-HHHHHHH-----------HHHHHHHHHHhChHHHHHHHH
Confidence            23456666666666555 3445667787765322211110 0000000           011234556677888899999


Q ss_pred             HHHHHhhhhhHHHHHHHhhcCCcccCccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcch--hHHHHHHHHH
Q 015847          291 YCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPI--MVARIAGVLT  364 (399)
Q Consensus       291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~~~~~~  364 (399)
                      ++++.-.......+...|..+.     +|++..+...+.....+..+++.. +.+++.||+|.|  +.+..+.++.
T Consensus       290 ~~l~~dg~~ti~~~~~i~a~~~-----lg~s~~~l~~~~l~~~i~a~~Ga~-~~g~l~~r~g~k~~~~l~~~l~~~  359 (477)
T PF11700_consen  290 YFLYSDGVNTIISFAGIYATEV-----LGMSTTQLIVFGLVVQIVAIIGAL-LFGWLQDRFGPKTKRTLLISLILW  359 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHh-----cCcCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhCCchhHHHHHHHHHH
Confidence            9999988888888999898877     899999999999999999999995 889999999988  6666655554

Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=99.55  E-value=3.2e-14  Score=131.59  Aligned_cols=140  Identities=13%  Similarity=0.016  Sum_probs=113.2

Q ss_pred             HHHhhccccchhhhHHHHHHHhccCccccchhhhhhHHHHHHHHHHHhhhhcccccccccCCchhhHHHHHHHHHHHHHH
Q 015847           50 VLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLF  129 (399)
Q Consensus        50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~  129 (399)
                      .+.............+.+.+++|.++.+      .++..+...++..++.++.|+++||+|||+.+.++.++..++.++.
T Consensus       214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~  287 (377)
T TIGR00890       214 FFLNAVSGLLLIGLYKPYGQSLGLSDGF------LVLAVSISSIFNGGGRPFLGALSDKIGRQKTMSIVFGISAVGMAAM  287 (377)
T ss_pred             HHHHhHHHHHHHHHHHHHHHHcCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHH
Confidence            3333333333444556667888888877      8999999999999999999999999999999999988888888777


Q ss_pred             hccchH--HHHHHHHHHHhhhccchhhH-HHHHhhhccchhhhHHHHHHHHHHHHHHhHHHHhhhhhcC
Q 015847          130 GLSVNF--WMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQ  195 (399)
Q Consensus       130 ~~~~~~--~~l~~~r~l~G~~~~~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~i~~~l~~  195 (399)
                      .+.++.  ..++...++.|++.+...+. .+++.|.+|+++|++++|+.+....+|..++|.+.+.+.+
T Consensus       288 ~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~  356 (377)
T TIGR00890       288 LFIPMLNDVLFLATVALVFFTWGGTISLFPSLVSDIFGPANSAANYGFLYTAKAVAGIFGGLIASHALT  356 (377)
T ss_pred             HHcccchhHHHHHHHHHHHHHhccchhccHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHh
Confidence            666543  33445667778876666554 8889999999999999999999999999999999999988

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=99.54  E-value=1.3e-13  Score=127.90  Aligned_cols=148  Identities=12%  Similarity=0.064  Sum_probs=128.9

Q ss_pred             hHHHHHHHHHHHhhccccchhhhHHHHHHHhccCccccchhhhhhHHHHHHHHHHHhhhhcccccccccCCchhhHHHHH
Q 015847           41 TELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTA  120 (399)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~  120 (399)
                      +.++...+..++............|.+.+++|.++.+      .|...+...++..+..++.+++.||+|+|+.+.++.+
T Consensus       205 ~~~~~~l~~~~l~~~~~~~~~~~~~~~l~~~g~s~~~------~g~l~~~~~~~~i~~~~~~~~l~~r~g~~~~l~~~~~  278 (382)
T TIGR00902       205 PMNLRFLAAVCLIQGAHAAYYGFSAIYWQAAGISASA------TGLLWGIGVLAEIIIFAFSNKLFQNCSARDLLLISAI  278 (382)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHhH------HHHHHHHHHHHHHHHHHHhHHHHhhCCHHHHHHHHHH
Confidence            4444444555555555666677778777889999998      9999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhccchHHHHHHHHHHHhhhccchhhH-HHHHhhhccchhhhHHHHHHH-HHHHHHHhHHHHhhhhhcC
Q 015847          121 SVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVS-TAWGIGLIIGPALGGFLAQ  195 (399)
Q Consensus       121 ~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~-~~~~~~~~~~~~r~~~~~~~~-~~~~~g~~~~p~i~~~l~~  195 (399)
                      ...+..+..+++++.+.+++.+++.|+..+...+. ..++.+. |+++|++..++++ ...++|..++|.++|++.+
T Consensus       279 ~~~~~~~~~~~~~~~~~~~~~q~l~g~~~~~~~~~~~~~i~~~-~~~~~~~~q~~~~~~~~g~g~~~g~~~~G~l~~  354 (382)
T TIGR00902       279 ACVGRWAIIGAIEAFPLIFLLQILHCGTFAVCHLAAMRYIAAQ-PGSEIAKLQALYNALAMGGLIAIFTAFAGFIYP  354 (382)
T ss_pred             HHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999998888875 8899988 9999999999985 5788999999999999998

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]

Probab=99.54  E-value=1.8e-12  Score=117.97  Aligned_cols=176  Identities=17%  Similarity=0.214  Sum_probs=140.6

Q ss_pred             hHHHHHHHHHHHhhccccchhhhHH-HHHHHhc----cCccccchhhhhhHHHHHHHHHHHhhhhccccccccc-CCchh
Q 015847           41 TELFSIWIIVLCTALPISSLFPFLY-FMIKDFQ----IAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRY-GRKPV  114 (399)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~dr~-Grr~~  114 (399)
                      +.++.+...-+.+-+.++.....+- ++..+++    .++++      ..-+.++|..-.-+..+++|+++||+ |+|+.
T Consensus        21 r~l~~if~vE~WERFsyYGmraiL~~Yl~~~~~~gLg~~~~~------A~~l~~~y~slVY~t~i~GG~laDr~LG~~~t   94 (498)
T COG3104          21 RGLYLIFFVELWERFSYYGMRAILILYLYYQLGDGLGFDETH------ATGLFSAYGSLVYLTPIIGGWLADRVLGTRRT   94 (498)
T ss_pred             chHHHHHHHHHHHHHhhhhhHHHHHHHHHHhccccCCcChHh------hHHHHHHHHHHHHHHHHHHHHHHHHhcchhHH
Confidence            5667777778888887776666654 5556666    88877      66666776666667889999999996 99999


Q ss_pred             hHHHHHHHHHHHHHHhccc--hHHHHHHHHHHHhhhccchhhH-HHHHhhhccch--hhhHHHHHHHHHHHHHHhHHHHh
Q 015847          115 IIMGTASVVIFNTLFGLSV--NFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREE--HQALGLSTVSTAWGIGLIIGPAL  189 (399)
Q Consensus       115 l~~~~~~~~~~~~~~~~~~--~~~~l~~~r~l~G~~~~~~~~~-~~~~~~~~~~~--~r~~~~~~~~~~~~~g~~~~p~i  189 (399)
                      +.+|.++..++.++.+.+.  +...++++-++.++|.|..-+. .+++.|.+|++  +|-..++++..+.++|+.++|.+
T Consensus        95 I~lGail~~iGh~~L~~~~~~~~~gl~i~L~~I~iG~Gl~K~NiS~llg~ly~~~DprrD~gFt~fY~~iNiGsl~~p~i  174 (498)
T COG3104          95 IVLGAILMAIGHLVLAISSVSGPGGLYIGLALIIVGTGLFKPNISSLLGELYPKDDPRRDGGFTLFYMGINIGSLIAPII  174 (498)
T ss_pred             HHHHHHHHHHHHHHHhccccccccHHHHHHHHHHhccccccccHHHHHHHhcCCCCcccCCCccEEEEEeehHHHHHHHH
Confidence            9999999999999999884  7888999999999999999884 99999999853  46778888999999999999999


Q ss_pred             hhhhcCCCCCCCCcccccccccCCcchhhHHHHHHHHHHHHHHHHhccc
Q 015847          190 GGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPE  238 (399)
Q Consensus       190 ~~~l~~~~~~~~~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~e  238 (399)
                      .+++.+                +++|...|...++-..+.++.....+.
T Consensus       175 ~~~~~~----------------~~g~~~gF~~aavGm~~gl~~f~~~~r  207 (498)
T COG3104         175 TGLLAI----------------NYGWHVGFGLAAVGMIIGLVIFLLGRR  207 (498)
T ss_pred             HHHHHH----------------hhCHHHHHHHHHHHHHHHHHHHHHccc
Confidence            999998                455555556666666666665555553

>PRK09528 lacY galactoside permease; Reviewed

Probab=99.53  E-value=2.4e-14  Score=134.67  Aligned_cols=139  Identities=18%  Similarity=0.146  Sum_probs=114.1

Q ss_pred             hhHHHHHHHHHHHhhhhcccccccccCCchhhHHHHHHHHHHHHHHhccchHHHHHHHHHHHhhhccchhh-HHHHHhhh
Q 015847           84 AGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGP-IKAYACEI  162 (399)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~-~~~~~~~~  162 (399)
                      .|++.++..++..++.++.|+++||+|||+.+..+.++.+++.++.+++++.+.+++.+++.|++.+...+ ...++.|.
T Consensus       264 ~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~  343 (420)
T PRK09528        264 FGYLNSFQVFLEALIMFFAPFIINRIGAKNALLLAGTIMAVRIIGSGFATGPLEVSILKLLHAFEVPFLLVGVFKYITLN  343 (420)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            89999999999999999999999999999999999999998888888899999999999999988777655 48899999


Q ss_pred             ccchhhhHHHHH-HHHHHHHHHhHHHHhhhhhcCCCCCCCCcccccccccCCcchhhHHHHHHHHHHHHHH-HHhccc
Q 015847          163 FREEHQALGLST-VSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIA-AFWLPE  238 (399)
Q Consensus       163 ~~~~~r~~~~~~-~~~~~~~g~~~~p~i~~~l~~~~~~~~~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~-~~~~~e  238 (399)
                      +|++.|++..+. ++....+|..++|.+.|++.+       .+||+         ..+...+++.++..+. ...+++
T Consensus       344 ~~~~~~a~~~~~~~~~~~~lg~~ig~~~~G~l~~-------~~G~~---------~~f~~~~~~~~i~~~~~~~~~~~  405 (420)
T PRK09528        344 FDVRLSATIYLVGFQFAKQLGAVFLSTLAGNLYD-------SIGFQ---------GTYLILGGIVLLFTLISVFTLSG  405 (420)
T ss_pred             cCccceeeeeeehHHHHHHHHHHHHHHHHHHHHH-------hhCch---------HHHHHHHHHHHHHHHHHHHHhcC
Confidence            999999888765 677889999999999999998       44444         4446666665544433 344444

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=99.52  E-value=2.9e-13  Score=123.90  Aligned_cols=163  Identities=22%  Similarity=0.316  Sum_probs=136.5

Q ss_pred             HHHhhccccchhhhHHHHHHHh-ccCccccchhhhhhHHHHHHHHHHHhhhhcccccccccCCch-hhHHHHHHHHHHHH
Q 015847           50 VLCTALPISSLFPFLYFMIKDF-QIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKP-VIIMGTASVVIFNT  127 (399)
Q Consensus        50 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~dr~Grr~-~l~~~~~~~~~~~~  127 (399)
                      .+.............|.+.++. |.++.+      .++..+...++..++.++.|++.||+|||+ .+..+..+..++.+
T Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  257 (352)
T cd06174         184 FFLLSFGYYGLLTYLPLYLQEVLGLSAAE------AGLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAALGLL  257 (352)
T ss_pred             HHHHHhHHHHHHHHHHHHHHHhcCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence            3344444555666677666554 888888      999999999999999999999999999999 99999999999999


Q ss_pred             HHhccchHHHHHHHHHHHhhhccchhhH-HHHHhhhccchhhhHHHHHHHHHHHHHHhHHHHhhhhhcCCCCCCCCcccc
Q 015847          128 LFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSS  206 (399)
Q Consensus       128 ~~~~~~~~~~l~~~r~l~G~~~~~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~i~~~l~~~~~~~~~~~gw  206 (399)
                      .....++.+.+.+..++.|++.+...+. .+++.|..|+++|++.+++.+....+|..++|.+.+.+.+           
T Consensus       258 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~g~l~~-----------  326 (352)
T cd06174         258 LLALAPSLALLLVALLLLGFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLD-----------  326 (352)
T ss_pred             HHHHhccHHHHHHHHHHHHHHHhccchhHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-----------
Confidence            9999898999999999999998887775 9999999999999999999999999999999999999997           


Q ss_pred             cccccCCcchhhHHHHHHHHHHHHHHHH
Q 015847          207 ESLFGKFPYFLPCLCISLFAFGVTIAAF  234 (399)
Q Consensus       207 ~~~f~~~~~~~~~~~~~~~~~~~~~~~~  234 (399)
                           ..+|+..+.+.+++.++..+...
T Consensus       327 -----~~~~~~~~~~~~~~~~i~~i~~~  349 (352)
T cd06174         327 -----TGGYGGVFLILAALALLAALLLL  349 (352)
T ss_pred             -----ccCcchHHHHHHHHHHHHHHHhe
Confidence                 33444444777776666555443

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>PRK10489 enterobactin exporter EntS; Provisional

Probab=99.52  E-value=2.2e-13  Score=128.07  Aligned_cols=162  Identities=17%  Similarity=0.120  Sum_probs=129.5

Q ss_pred             chhhhHHHHHHH-hccCccccchhhhhhHHHHHHHHHHHhhhhcccccccccCCchhhHHHHHHHHHHHHHHhccchHHH
Q 015847           59 SLFPFLYFMIKD-FQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWM  137 (399)
Q Consensus        59 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~  137 (399)
                      ......|.+.++ +|.+..+      .+++.+...++..++.++.+++.||.++++.+..+.++.+++.++..+.++.+.
T Consensus       241 ~~~~~~p~~~~~~~g~~~~~------~g~~~~~~~~g~~ig~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  314 (417)
T PRK10489        241 AVRVLYPALADEVWQMGAAQ------IGLLYAAVPLGAALGALTSGWLAHSARPGLLMLLSTLGSFLAVGLFGLMPMWIL  314 (417)
T ss_pred             hHHHhhHHHHHhccCCChhH------hHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHHHHHHHHHHHHHHccchHHH
Confidence            345566766666 8998888      999999999999999999999999988888888888888888888888888888


Q ss_pred             HHHHHHHHhhhccchhhH-HHHHhhhccchhhhHHHHHHHHHHHHHHhHHHHhhhhhcCCCCCCCCcccccccccCCcch
Q 015847          138 AVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYF  216 (399)
Q Consensus       138 l~~~r~l~G~~~~~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~i~~~l~~~~~~~~~~~gw~~~f~~~~~~  216 (399)
                      ..++.++.|++.+...+. .+++.|..|++.|++++|+++....+|..+||.+.|.+.+                .++.+
T Consensus       315 ~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~l~G~l~~----------------~~g~~  378 (417)
T PRK10489        315 AVLCLALFGYLSAISSLLQYTLLQTQTPDEMLGRINGLWTAQNVTGDAIGAALLGGLGA----------------MMTPV  378 (417)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHH----------------Hhchh
Confidence            888888899887777665 7899999999999999999999999999999999999998                33333


Q ss_pred             hhHHHHHHHHHH-HHHHHHhcccCCCC
Q 015847          217 LPCLCISLFAFG-VTIAAFWLPETLHR  242 (399)
Q Consensus       217 ~~~~~~~~~~~~-~~~~~~~~~e~~~~  242 (399)
                      ..+...++..++ ..+....+||.++.
T Consensus       379 ~~~~~~~~~~~~~~~~~~~~~~~~~~~  405 (417)
T PRK10489        379 ASASASGFGLLIIGVLLLLVLGELRRF  405 (417)
T ss_pred             hHHHHHHHHHHHHHHHHHHhccccccc
Confidence            334544444333 44455666665543

>TIGR00899 2A0120 sugar efflux transporter

Probab=99.51  E-value=3.4e-13  Score=124.92  Aligned_cols=155  Identities=15%  Similarity=0.294  Sum_probs=120.8

Q ss_pred             hhhHHH-HHHHhccCccccchhhhhhHHHHHHHHHHHhhhhcccccccccCCchhhHHHHHHHHHHHHHHhccchHHHHH
Q 015847           61 FPFLYF-MIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAV  139 (399)
Q Consensus        61 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~  139 (399)
                      ....|. +.+++|.++.+      .++..+...+...++.++.|++.||+|||+.+.++.++..+......+.++.+.++
T Consensus       219 ~~~~~~~~~~~~g~~~~~------~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  292 (375)
T TIGR00899       219 IINMPLLIIHELGLPDKL------AGLMMGTAAGLEIPFMLLAGYLIKRFGKRRLMLLAALAGVAFYTGLAADNSLWALL  292 (375)
T ss_pred             HhhhHHHHHHHcCCCHHH------HHHHHHHHHHHHHHHHHhHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344454 45778998888      88888887777788899999999999999999888777666666666677888888


Q ss_pred             HHHHHHhhhccchhhH-HHHHhhhccchhhhHHHHHHHHHHHHHHhHHHHhhhhhcCCCCCCCCcccccccccCCcchhh
Q 015847          140 LTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLP  218 (399)
Q Consensus       140 ~~r~l~G~~~~~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~i~~~l~~~~~~~~~~~gw~~~f~~~~~~~~  218 (399)
                      +.+++.|++.+...+. ..++.|..|+ +|++++++.+....+|..++|.++|.+.+                .++|+..
T Consensus       293 ~~~~~~g~~~g~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~g~~~~g~~~~----------------~~g~~~~  355 (375)
T TIGR00899       293 MLQLLNAIFIGILAGIGMLYFQDLMPG-RAGAATTLYTNTGRVGWIIAGSVGGILAE----------------RWSYHAV  355 (375)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCcc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHH----------------hccchhH
Confidence            8889999987776664 7888898875 56799999999999999999999999988                3344444


Q ss_pred             HHHHHHHHHHHHHHHHhccc
Q 015847          219 CLCISLFAFGVTIAAFWLPE  238 (399)
Q Consensus       219 ~~~~~~~~~~~~~~~~~~~e  238 (399)
                      +...++..++..+...+++|
T Consensus       356 ~~~~~~~~~~~~~~~~~~~~  375 (375)
T TIGR00899       356 YWFAIVMLIVALFCLLLIKD  375 (375)
T ss_pred             HHHHHHHHHHHHHHHheecC
Confidence            57776666666666555543

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=99.51  E-value=8.4e-13  Score=122.99  Aligned_cols=179  Identities=12%  Similarity=0.077  Sum_probs=126.8

Q ss_pred             HHHHHHHHHHHhhccccchhhhHHHHHHHhccCccccchhhhhhHHHHHHHHHHHhhhhcccccccccCCchhhHHHHHH
Q 015847           42 ELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTAS  121 (399)
Q Consensus        42 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~  121 (399)
                      ..+.+....++..........++|.+.+++|.+..+      .+...+.+.++..++.++.|++.||+|||+.+..+..+
T Consensus       206 ~~~~l~~~~~~~~~~~~~~~~~lp~~l~~~g~s~~~------ag~~~~~~~i~~i~g~~~~g~l~~r~~~~~~~~~~~~l  279 (393)
T PRK09705        206 RAWTLGVYFGLINGGYASLIAWLPAFYIEIGASAQY------SGSLLALMTLGQAAGALLMPAMARHQDRRKLLMLALVL  279 (393)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhh------hhHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHH
Confidence            334344444444455556667778777788999888      99999999999999999999999999999999888877


Q ss_pred             HHHHHHHHhc-cchHHHHHHHHHHHhhhccchhh-HHHHHhhhcc-chhhhHHHHHHHHHHHHHHhHHHHhhhhhcCCCC
Q 015847          122 VVIFNTLFGL-SVNFWMAVLTRFLLGSLNGLLGP-IKAYACEIFR-EEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAE  198 (399)
Q Consensus       122 ~~~~~~~~~~-~~~~~~l~~~r~l~G~~~~~~~~-~~~~~~~~~~-~~~r~~~~~~~~~~~~~g~~~~p~i~~~l~~~~~  198 (399)
                      ..++.++... .++...+.  -++.|++.+...+ ......+..+ +++|++.+++.+....++..++|.+.|++.+.. 
T Consensus       280 ~~~~~~~~~~~~~~~~~~~--~~l~g~g~g~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~gp~~~G~l~~~~-  356 (393)
T PRK09705        280 QLVGFCGFIWLPLQLPVLW--AMVCGLGLGGAFPLCLLLALDHSVQPAIAGKLVAFMQGIGFIIAGLAPWFSGVLRSIS-  356 (393)
T ss_pred             HHHHHHHHHHccchHHHHH--HHHHHHhccchHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-
Confidence            7777665543 33322222  2456777666656 4556667764 678999999999999999999999999999832 


Q ss_pred             CCCCcccccccccCCcchhhHHHHHHHHHHHHHH-HHhcccCCCCC
Q 015847          199 KYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIA-AFWLPETLHRH  243 (399)
Q Consensus       199 ~~~~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~-~~~~~e~~~~~  243 (399)
                            |        ++...+.+.++.++..... ..+.||++++.
T Consensus       357 ------g--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  388 (393)
T PRK09705        357 ------G--------NYLMDWAFHALCVVGLMIITLRFAPARFPQL  388 (393)
T ss_pred             ------C--------CchHHHHHHHHHHHHHHHHHHHhccccccch
Confidence                  1        1344445555555554443 55567765544

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=99.50  E-value=1.2e-13  Score=131.02  Aligned_cols=147  Identities=17%  Similarity=0.151  Sum_probs=116.6

Q ss_pred             HHHHHHHHHHhhccccchhhhHHHHHHHhccCccccchhhhhhHHHHHHHHHHHhhhhccccccccc--CCchhhHH--H
Q 015847           43 LFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRY--GRKPVIIM--G  118 (399)
Q Consensus        43 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~dr~--Grr~~l~~--~  118 (399)
                      ++......++..........++|.+.+++|.+..+      .+++.++..++..+++++.|+++||.  ++|+...+  +
T Consensus       243 ~~~~~~~~~l~~~~~~~~~~~l~~~~~~~g~s~~~------~g~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~  316 (455)
T TIGR00892       243 FLVYLSGNVIMFLGFFAPIIFLVPYAKDKGVDEYE------AAFLLSIIGFVDIFARPSCGLIAGLKWIRPHVQYLFSFA  316 (455)
T ss_pred             HHHHHHHHHHHHHHccchHHHHHHHHHHcCCCHHH------HHHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHH
Confidence            44444445555555556666778777888999888      99999999999999999999999984  33433333  3


Q ss_pred             HHHHHHHHHHHhccchHHHHHHHHHHHhhhccchhhH-HHHHhhhccchhhhHHHHHHHHHHHHHHhHHHHhhhhhcC
Q 015847          119 TASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQ  195 (399)
Q Consensus       119 ~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~i~~~l~~  195 (399)
                      .+..+++.++....++++.+++.+++.|++.+...+. .+++.|.+|++++++.+++++....+|..+||.++|.+.+
T Consensus       317 ~~~~~l~~ll~~~~~~~~~~~i~~~~~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~  394 (455)
T TIGR00892       317 LLFNGLTHLLCALAGDYTGLVIYCIFFGLSFGSVGALLFEVLMDLVGAQRFSSAVGLVTIVECCAVLIGPPLAGRLVD  394 (455)
T ss_pred             HHHHHHHHHHHHHhchHHHHHHHHHHHHHHhchHHHHHHHHHHHHhhHHHHhhHHhHHHHHHHHHHHccccceeeeeh
Confidence            3444455556667788888899999999998887775 8999999999999999999999999999999999999987

>PRK12382 putative transporter; Provisional

Probab=99.49  E-value=6.2e-13  Score=123.97  Aligned_cols=155  Identities=21%  Similarity=0.206  Sum_probs=123.0

Q ss_pred             cccchhhhHHHHHHHhccCccccchhhhhhHHHHHHHHHHHhhhhcccccccccCCchhhHHHHHHHHHHHHHHhccchH
Q 015847           56 PISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNF  135 (399)
Q Consensus        56 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~  135 (399)
                      .........+.+.++.+.+.        .++..+.+.++..+++++.|++.||+|+|+.+..+..+.+++.++..+.++.
T Consensus       231 ~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~  302 (392)
T PRK12382        231 GFAVIGTFVSLYFASKGWAM--------AGFTLTAFGGAFVLMRVLFGWMPDRFGGVKVAIVSLLVETVGLLLLWLAPTA  302 (392)
T ss_pred             HHhHHHHHHHHHHHhcCCch--------hHHHHHHHHHHHHHHHHHHHHHHHhcCCCeehHHHHHHHHHHHHHHHHcccH
Confidence            33444556666666666543        5566677788888999999999999999999999998888888888888888


Q ss_pred             HHHHHHHHHHhhhccchhhH-HHHHhhhccchhhhHHHHHHHHHHHHHHhHHHHhhhhhcCCCCCCCCcccccccccCCc
Q 015847          136 WMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFP  214 (399)
Q Consensus       136 ~~l~~~r~l~G~~~~~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~i~~~l~~~~~~~~~~~gw~~~f~~~~  214 (399)
                      +.+++..++.|++.+...+. .+.+.|.+|+++|++++|+.+....+|..++|.+.+++.+       ..||+.      
T Consensus       303 ~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~ig~~~~g~l~~-------~~g~~~------  369 (392)
T PRK12382        303 WVALAGAALTGAGCSLIFPALGVEVVKRVPSQVRGTALGGYAAFQDIAYGVSGPLAGMLAT-------SFGYPS------  369 (392)
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HhCchH------
Confidence            88888899999988877664 7888999999999999999999999999999999999998       444444      


Q ss_pred             chhhHHHHHHHHHHHHHHHH
Q 015847          215 YFLPCLCISLFAFGVTIAAF  234 (399)
Q Consensus       215 ~~~~~~~~~~~~~~~~~~~~  234 (399)
                         .+...+++.++..+...
T Consensus       370 ---~~~~~~~~~~~~~~~~~  386 (392)
T PRK12382        370 ---VFLAGAISAVLGIIVTI  386 (392)
T ss_pred             ---HHHHHHHHHHHHHHHHH
Confidence               44666666665544433

>PRK03633 putative MFS family transporter protein; Provisional

Probab=99.49  E-value=6.6e-13  Score=123.25  Aligned_cols=153  Identities=20%  Similarity=0.271  Sum_probs=116.6

Q ss_pred             cchhhhHHHHHHHhccCccccchhhhhhHHHHHHHHHHHhhhhcccccccccCCchhhHHHHHHHHHHHHHHhccchHHH
Q 015847           58 SSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWM  137 (399)
Q Consensus        58 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~  137 (399)
                      .....++|.+.++.|.++.+      .++..+...++..+++++.|++.||+|+|+++..+.....++.+...  + ...
T Consensus       217 ~~~~~~lp~~~~~~g~s~~~------~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~--~-~~~  287 (381)
T PRK03633        217 GSLYGLMPLYLNHQGMSDAS------IGFWMALLVSAGILGQWPIGRLADRFGRLLVLRVQVFVVILGSIAML--S-QAA  287 (381)
T ss_pred             HHHHHHHHHHHHHcCCCHHH------HHHHHHHHHHHHHHHHhhhHHHHHHcCcHHHHHHHHHHHHHHHHHHh--h-hHH
Confidence            34445678777888988888      89999999999999999999999999999999888887777665443  2 233


Q ss_pred             HHHHHHHHhhhccchhhH-HHHHhhhccchhhhHHHHHHHHHHHHHHhHHHHhhhhhcCCCCCCCCcccccccccCCcch
Q 015847          138 AVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYF  216 (399)
Q Consensus       138 l~~~r~l~G~~~~~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~i~~~l~~~~~~~~~~~gw~~~f~~~~~~  216 (399)
                      .....++.|++.....|. .+.+.|..|+++++...+..+...++|..+||.++|++.+       +.||         +
T Consensus       288 ~~~~~~l~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~igp~~~G~l~~-------~~g~---------~  351 (381)
T PRK03633        288 MAPALFILGAAGFTLYPVAMAWACEKVEHHELVAMNQALLLSYTVGSLLGPSFTAMLMQ-------NYSD---------N  351 (381)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HhCc---------c
Confidence            345667777765555664 8888999999888888888888999999999999999998       3343         4


Q ss_pred             hhHHHHHHHHHHHHHHHHh
Q 015847          217 LPCLCISLFAFGVTIAAFW  235 (399)
Q Consensus       217 ~~~~~~~~~~~~~~~~~~~  235 (399)
                      ..+.+.+.+.++.....++
T Consensus       352 ~~f~~~~~~~l~~~~~~~~  370 (381)
T PRK03633        352 LLFIMIASVSFIYLLMLLR  370 (381)
T ss_pred             HHHHHHHHHHHHHHHHHHh
Confidence            4446666666554444443

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=99.48  E-value=4.5e-13  Score=125.59  Aligned_cols=159  Identities=18%  Similarity=0.215  Sum_probs=122.8

Q ss_pred             ccchhhhHHHHHHHhccCccccchhhhhhHHHHHHHHHHHhhhhcccccccccCCchhhHHHHHHHHHHHHHHhccchHH
Q 015847           57 ISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFW  136 (399)
Q Consensus        57 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~  136 (399)
                      .....+..+.+.++.+.+..+  .....+.+.++..++..++.++.|+++||+|||+.+..+..+..++.+...+.++.+
T Consensus       235 ~~~~~~~~~~~~~~~~~~~~~--~~~~~g~~~~~~~l~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~  312 (408)
T PRK09874        235 TGSIAPILTLYVRELAGNVSN--IAFISGMIASVPGVAALLSAPRLGKLGDRIGPEKILITALIFSVLLLIPMSFVQTPL  312 (408)
T ss_pred             HHHHHHHHHHHHHHHhccchH--HHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHhccHH
Confidence            344556666665554333222  112256666777888889999999999999999999999888888877777778888


Q ss_pred             HHHHHHHHHhhhccchhhH-HHHHhhhccchhhhHHHHHHHHHHHHHHhHHHHhhhhhcCCCCCCCCcccccccccCCcc
Q 015847          137 MAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPY  215 (399)
Q Consensus       137 ~l~~~r~l~G~~~~~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~i~~~l~~~~~~~~~~~gw~~~f~~~~~  215 (399)
                      .+++.+++.|++.+...+. .+.+.+..|+++|++.++..+....+|..+||.++|.+.+       ..         +|
T Consensus       313 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~gp~~~G~l~~-------~~---------g~  376 (408)
T PRK09874        313 QLGILRFLLGAADGALLPAVQTLLVYNSSNQIAGRIFSYNQSFRDIGNVTGPLMGAAISA-------NY---------GF  376 (408)
T ss_pred             HHHHHHHHHHhhhHhhHHHHHHHHHHhCCcccceeeehHHHHHHHHHHHhhHHHHHHHHh-------hc---------ch
Confidence            8889999999998887775 8888899999999999999999999999999999999988       33         44


Q ss_pred             hhhHHHHHHHHHHHHHHH
Q 015847          216 FLPCLCISLFAFGVTIAA  233 (399)
Q Consensus       216 ~~~~~~~~~~~~~~~~~~  233 (399)
                      +..+.+.++..++..+..
T Consensus       377 ~~~f~~~~~~~l~~~~~~  394 (408)
T PRK09874        377 RAVFLVTAGVVLFNAVYS  394 (408)
T ss_pred             hHHHHHHHHHHHHHHHHH
Confidence            444577766666654443

>TIGR00897 2A0118 polyol permease family

Probab=99.47  E-value=6.6e-13  Score=124.15  Aligned_cols=171  Identities=15%  Similarity=0.239  Sum_probs=123.1

Q ss_pred             HHHHHHHHHHhhccccchhhhHHHHHHHhccCccccchhhhhhHHHHHHHHHHHhhhhcccccccccCCchhhH-HHHHH
Q 015847           43 LFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVII-MGTAS  121 (399)
Q Consensus        43 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~dr~Grr~~l~-~~~~~  121 (399)
                      ++...+..++............|.+.+++|.+..+      .++..+...++..++.++.|+++||+|||+.+. .+.+.
T Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~------~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~l~  297 (402)
T TIGR00897       224 VLLGGMVRIINTIGLFGFAVFLPMFVAELGFSTSE------WLQIWGTFFFTNIVFNVIFGIVGDKLGWMNTVRWFGGVG  297 (402)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhH------HHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHH
Confidence            33344444444555555667788888889999988      889889999999999999999999999988764 33333


Q ss_pred             HHHHHHHHh-----ccchHHHHHHHHHHHhhhccchhhHHHHHhhhccchhhhHHHHHHHHHHHHHHhHHHHhhhhhcCC
Q 015847          122 VVIFNTLFG-----LSVNFWMAVLTRFLLGSLNGLLGPIKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQP  196 (399)
Q Consensus       122 ~~~~~~~~~-----~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~i~~~l~~~  196 (399)
                      ..++.+...     ..++.+..++..++.|++.+...+....+.|.. +++|++++|+.+....+|..++|.+++.+.+ 
T Consensus       298 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~-~~~~g~~~g~~~~~~~lg~~~gp~i~g~l~~-  375 (402)
T TIGR00897       298 CGIFTLALYYIPQHFGHSFAVALIIAIALGIFLAGYVPLAAVFPTLA-PKHKGAAMSVLNLSAGLSAFLAPAIAVLFIG-  375 (402)
T ss_pred             HHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhC-cchhHHHHHHHHHHHHHHHHHHHHHHHHHHh-
Confidence            333332222     134666777788888887666555556667764 4689999999999999999999999999998 


Q ss_pred             CCCCCCcccccccccCCcchhhHHHHHHHHHHHHHHHHhc
Q 015847          197 AEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWL  236 (399)
Q Consensus       197 ~~~~~~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (399)
                                     .+++...+.+.+++.++..+...++
T Consensus       376 ---------------~~g~~~~~~~~a~~~~i~~~~~~~~  400 (402)
T TIGR00897       376 ---------------FFGAIGVVWIFAALYVVSAFLTAFI  400 (402)
T ss_pred             ---------------hcchHHHHHHHHHHHHHHHHHHHHh
Confidence                           4445555567766666655554443

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>TIGR00893 2A0114 d-galactonate transporter

Probab=99.46  E-value=1.4e-12  Score=121.38  Aligned_cols=148  Identities=13%  Similarity=0.093  Sum_probs=105.3

Q ss_pred             hHHHHHHHHHHHhhccccchhhhHHHHH-HHhccCccccchhhhhhHHHHHHHHHHHhhhhcccccccccCCch--hhH-
Q 015847           41 TELFSIWIIVLCTALPISSLFPFLYFMI-KDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKP--VII-  116 (399)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~dr~Grr~--~l~-  116 (399)
                      +.++......++............|.+. +++|.+..+      .++..+...++..++.++.|+++||+|||+  ... 
T Consensus       215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~  288 (399)
T TIGR00893       215 RRVWGLALGQFLVNIGLGFFLTWFPTYLVQERGLSILE------AGFMASLPGIVGFIGMILGGRLSDLLLRRGKSLVFA  288 (399)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcccHHH------hhHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHH
Confidence            3444555555666666666677777554 568888888      999999999999999999999999999996  111 


Q ss_pred             -----HHHHHHHHHHHHHhccchHHHHHHHHHHHhhhccchhh-HHHHHhhhccchhhhHHHHHHHHHHHHHHhHHHHhh
Q 015847          117 -----MGTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGP-IKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALG  190 (399)
Q Consensus       117 -----~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~-~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~i~  190 (399)
                           .+.++..+........++.+..+....+.+.+.+ ..+ ..+++.|.+|+++|++++++.+....+|..++|.+.
T Consensus       289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~i~  367 (399)
T TIGR00893       289 RKTAIIAGLVLSLLMFATNYVNIPYAALALVALGFFGLG-AGAIGWALISDNAPGNIAGLTGGLINSLGNLGGIVGPIVI  367 (399)
T ss_pred             HHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHhchh-hhhHHHHHHHhhcChhHHHHHHHHHHHHHHHhhhhhhHHh
Confidence                 1111111112222223344444444444444555 455 599999999999999999999999999999999999


Q ss_pred             hhhcC
Q 015847          191 GFLAQ  195 (399)
Q Consensus       191 ~~l~~  195 (399)
                      +.+.+
T Consensus       368 g~l~~  372 (399)
T TIGR00893       368 GAIAA  372 (399)
T ss_pred             hhhcc
Confidence            99998

>PRK03545 putative arabinose transporter; Provisional

Probab=99.45  E-value=1.9e-12  Score=120.58  Aligned_cols=149  Identities=13%  Similarity=0.146  Sum_probs=112.3

Q ss_pred             hhHH-HHHHHhccCccccchhhhhhHHHHHHHHHHHhhhhcccccccccCCchhhHHHHHHHHHHH-HHHhccchHHHHH
Q 015847           62 PFLY-FMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFN-TLFGLSVNFWMAV  139 (399)
Q Consensus        62 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~-~~~~~~~~~~~l~  139 (399)
                      ..++ .+.+++|.+..+      .++..+...++..+++++.|+++||+|||+... +..+..++. ......++.+.++
T Consensus       226 ~~~~~~l~~~~g~s~~~------~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~  298 (390)
T PRK03545        226 SYIEPFVQQVAGLSENF------ATLLLLLFGGAGIIGSVLFSRLGNRHPSGFLLI-AIALLLVCLLLLLPAANSEWHLS  298 (390)
T ss_pred             HHHHHHHHHhcCCCccH------HHHHHHHHHHHHHHHHHHHHHHhhccchhHHHH-HHHHHHHHHHHHHHHhchHHHHH
Confidence            3444 445567888888      999999999999999999999999999887544 444333333 3344567788888


Q ss_pred             HHHHHHhhhccchhhH-HHHHhhhccchhhhHHHHHHHHHHHHHHhHHHHhhhhhcCCCCCCCCcccccccccCCcchhh
Q 015847          140 LTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLP  218 (399)
Q Consensus       140 ~~r~l~G~~~~~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~i~~~l~~~~~~~~~~~gw~~~f~~~~~~~~  218 (399)
                      ++.++.|++.+...+. .+.+.|..| ++|++++|.++....+|..+||+++|.+.+                .++++..
T Consensus       299 ~~~~l~g~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~G~~~~G~~~~----------------~~g~~~~  361 (390)
T PRK03545        299 VLSIFWGIAIMCIGLAMQVKVLKLAP-DATDVAMALFSGIFNIGIGAGALLGNQVSL----------------HLGLSSI  361 (390)
T ss_pred             HHHHHHHHHHhcchHHHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHh----------------ccChhHH
Confidence            8888999986665554 777778766 688999999999999999999999999998                4444444


Q ss_pred             HHHHHHHHHHHHHHHH
Q 015847          219 CLCISLFAFGVTIAAF  234 (399)
Q Consensus       219 ~~~~~~~~~~~~~~~~  234 (399)
                      +...+.+.++..+...
T Consensus       362 ~~~~~~~~~~~~~~~~  377 (390)
T PRK03545        362 GYVGAALALAALVWSI  377 (390)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            5777766666554433

>PRK03699 putative transporter; Provisional

Probab=99.45  E-value=1.1e-12  Score=122.37  Aligned_cols=146  Identities=11%  Similarity=0.112  Sum_probs=114.4

Q ss_pred             HHHHHHHHHHhhccccchhhhHHHHH-HHhccCccccchhhhhhHHHHHHHHHHHhhhhcccccccccCCchhhHHHHHH
Q 015847           43 LFSIWIIVLCTALPISSLFPFLYFMI-KDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTAS  121 (399)
Q Consensus        43 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~  121 (399)
                      ++...+..++..........+.|.+. +++|.+..+      .+++.+.+.++..++.++.|+++||+|||+.+.....+
T Consensus       207 ~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~------~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~l~~~~~~  280 (394)
T PRK03699        207 VLFLAIAALLYILAQLTFISWVPEYAQKKFGMSLED------AGNLVSNFWMAYMVGMWIFSFIVRFFDLQRILTVLAGL  280 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHH------hhHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHH
Confidence            33444444444444455667788666 668999988      99999999999999999999999999999999888877


Q ss_pred             HHHHHHHHhccchHHHHHHHHHHHhhhccchhhH-HHHHhhhccchhhhHHHHHHHHHHHHHHhHHHHhhhhhcC
Q 015847          122 VVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQ  195 (399)
Q Consensus       122 ~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~i~~~l~~  195 (399)
                      .++...+....++.+.+.+..++.|++.+...+. .++..|..| +++++..+.......+|..++|.+.|++.+
T Consensus       281 ~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~i~p~~~G~l~~  354 (394)
T PRK03699        281 ALVLMYLFVNTDDPSHLLYAILGLGFFSSAIYTTIITLGSQQTK-VASPKLVNFILTCGTIGTMLTFVVTSPIVA  354 (394)
T ss_pred             HHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-CCCHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence            7777777666777777777778888876655554 677777765 456778888888889999999999999998

>PRK03893 putative sialic acid transporter; Provisional

Probab=99.45  E-value=1.8e-12  Score=124.75  Aligned_cols=131  Identities=20%  Similarity=0.245  Sum_probs=103.7

Q ss_pred             chhhhHHHHH-HHhccCccccchhhhhhHHHHHHHHHHHhhhhcccccccccCCchhhHHHHHHHHHHHHHHhcc--chH
Q 015847           59 SLFPFLYFMI-KDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLS--VNF  135 (399)
Q Consensus        59 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~--~~~  135 (399)
                      .....+|.+. +++|.+..+      .+++.+...++..++.++.|+++||+|||+++..+.++..+..+.....  .+.
T Consensus       293 ~~~~~lp~~l~~~~g~~~~~------~g~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  366 (496)
T PRK03893        293 PIQALLPTYLKTDLGYDPHT------VANVLFFSGFGAAVGCCVGGFLGDWLGTRKAYVCSLLISQLLIIPVFAIGGANV  366 (496)
T ss_pred             hHHHHHHHHHHhhcCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhccccHH
Confidence            3456778766 588999988      9999999999999999999999999999999888877666655444332  344


Q ss_pred             HHHHHHHHHHhh-hccchhhHHHHHhhhccchhhhHHHHHHHHHHHHHHhHHHHhhhhhcC
Q 015847          136 WMAVLTRFLLGS-LNGLLGPIKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQ  195 (399)
Q Consensus       136 ~~l~~~r~l~G~-~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~i~~~l~~  195 (399)
                      +.+.+..++.+. +.+......+++.|.+|+++|++++++.+....+|..+||.++|.+.+
T Consensus       367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~lgp~l~g~l~~  427 (496)
T PRK03893        367 WVLGLLLFFQQMLGQGISGLLPKLIGGYFDTEQRAAGLGFTYNVGALGGALAPILGALIAQ  427 (496)
T ss_pred             HHHHHHHHHHHHHhcccchhhHHHHHhhCCHHHhhcccchhhhhhhHHHHHHHHHHHHHhc
Confidence            444444454444 334333347889999999999999999999999999999999999998

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=99.43  E-value=1.6e-12  Score=123.99  Aligned_cols=148  Identities=15%  Similarity=0.159  Sum_probs=109.9

Q ss_pred             HHHHHHHHHHHhhccccchhhhHHHH-HHHhccCccccchhhhhhHHHHHHHHHHHhhhhcccccccccCCchhhHHHHH
Q 015847           42 ELFSIWIIVLCTALPISSLFPFLYFM-IKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTA  120 (399)
Q Consensus        42 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~  120 (399)
                      .++...+..++..........++|.+ .+++|.+..+      .++..+...++..++.++.|+++||+|||+.+.....
T Consensus       259 ~~~~~~~~~~~~~~~~~~~~~~~p~yl~~~~g~s~~~------a~~~~~~~~~~~~ig~~~~G~lsDr~g~r~~~~~~~~  332 (467)
T PRK09556        259 VIWLLCFANIFLYIVRIGIDNWSPVYAFQELGFSKED------AINTFTLFEIGALVGSLLWGWLSDLANGRRALVACIA  332 (467)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHH
Confidence            34445555555555555566778855 4678999988      8999999999999999999999999999988766544


Q ss_pred             HHHHHH--HHHhccchHHHHHHHHHHHhhhc-cchhhHHHHHhhhccchhhhHHHHHHHHHHHH-HHhHHHHhhhhhcC
Q 015847          121 SVVIFN--TLFGLSVNFWMAVLTRFLLGSLN-GLLGPIKAYACEIFREEHQALGLSTVSTAWGI-GLIIGPALGGFLAQ  195 (399)
Q Consensus       121 ~~~~~~--~~~~~~~~~~~l~~~r~l~G~~~-~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~-g~~~~p~i~~~l~~  195 (399)
                      +..++.  +.....++.....+.+++.|+.. +..........|.+|+++||++.|+.+....+ |..++|.+.|++.+
T Consensus       333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~p~~~~g~a~gi~~~~g~l~g~~~~~~~~G~i~~  411 (467)
T PRK09556        333 LALIIFTLGVYQHATSEYMYLASLFALGFLVFGPQLLIGVAAVGFVPKKAIGVANGIKGTFAYLFGDSFAKVGLGMIAD  411 (467)
T ss_pred             HHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhhHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhHHHHhhhHHHHhc
Confidence            443332  22233456666767788888643 33333356777999999999999999988886 77999999999988

>PRK09952 shikimate transporter; Provisional

Probab=99.43  E-value=2.4e-12  Score=121.65  Aligned_cols=167  Identities=15%  Similarity=0.149  Sum_probs=114.7

Q ss_pred             hhccccchhhhHHHH-HHHhccCccccchhhhhhHHHHHHHHHHHhhhhcccccccccCCchhhHHHHHHHHHHHHHHhc
Q 015847           53 TALPISSLFPFLYFM-IKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGL  131 (399)
Q Consensus        53 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~  131 (399)
                      ..........+.|.+ .+++|.+...      ...+.....+...++.++.|+++||+|||+++..+.++.+++.+.+..
T Consensus       262 ~~~~~~~~~~~~~~y~~~~~g~s~~~------~~~~~~~~g~~~~i~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~  335 (438)
T PRK09952        262 ELLTMYIVTAFALNYSTQNLGLPREL------FLNIGLLVGGLSCLTIPCFAWLADRFGRRRVYITGALIGTLSAFPFFM  335 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHH
Confidence            333444455566644 4667887765      555555666677788899999999999999988887666554433322


Q ss_pred             ---c-chHHHHHHHHHHHhhhccchhh-HHHHHhhhccchhhhHHHHHH-HHHHHHHHhHHHHhhhhhcCCCCCCCCccc
Q 015847          132 ---S-VNFWMAVLTRFLLGSLNGLLGP-IKAYACEIFREEHQALGLSTV-STAWGIGLIIGPALGGFLAQPAEKYPNLFS  205 (399)
Q Consensus       132 ---~-~~~~~l~~~r~l~G~~~~~~~~-~~~~~~~~~~~~~r~~~~~~~-~~~~~~g~~~~p~i~~~l~~~~~~~~~~~g  205 (399)
                         . ++.+.+++..++.+++.+...+ ..+++.|.+|++.|+++.++. +.+..+|+.++|.+.+++.+..        
T Consensus       336 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~e~~p~~~r~tg~g~~~~~~~~lgg~~~p~i~g~l~~~~--------  407 (438)
T PRK09952        336 ALEAQSIFWIVFFSIMLANIAHDMVVCVQQPMFTEMFGASYRYSGAGVGYQVASVVGGGFTPFIAAALVTYF--------  407 (438)
T ss_pred             HHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHHhc--------
Confidence               2 2344444555666777666555 489999999999999999985 4555689999999999998721        


Q ss_pred             ccccccCCcchhhHHHHHHHHHHHHHHHHhcccC
Q 015847          206 SESLFGKFPYFLPCLCISLFAFGVTIAAFWLPET  239 (399)
Q Consensus       206 w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~e~  239 (399)
                            ..+|..++.+.++.+++..+..+.++|+
T Consensus       408 ------~~~~~~~~~~~~~~~~i~~v~~~~~~~~  435 (438)
T PRK09952        408 ------GGSWHSVAIYLLAGCLISAMTALLMKDN  435 (438)
T ss_pred             ------CCCchHHHHHHHHHHHHHHHHHHHcccc
Confidence                  1224555566777777766666666653

>COG2270 Permeases of the major facilitator superfamily [General function prediction only]

Probab=99.42  E-value=8.5e-11  Score=104.95  Aligned_cols=275  Identities=12%  Similarity=0.012  Sum_probs=176.9

Q ss_pred             hhhhhHHHHHHHHHHHhhhhcccccccccCCchhh-HHHHHHHHHHHHHHhccch--HH-HHHHHHHHHhhhccchhhH-
Q 015847           81 GSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVI-IMGTASVVIFNTLFGLSVN--FW-MAVLTRFLLGSLNGLLGPI-  155 (399)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~G~l~dr~Grr~~l-~~~~~~~~~~~~~~~~~~~--~~-~l~~~r~l~G~~~~~~~~~-  155 (399)
                      ..+.+...++..+..++.+|+.|.++|+.|+||.. -....+..++.++..+.++  ++ ..++...+..++.....+. 
T Consensus        57 ~a~~gy~~aia~llia~LapiLG~iaD~~g~Rk~~~~~f~~i~i~~~~~L~~i~~~s~~~~~l~~~il~~i~~~~s~Vfy  136 (438)
T COG2270          57 TAYWGYASAIAGLLIALLAPILGTIADYPGPRKKFFGFFTAIGIISTFLLWFIPPGSYLLLLLLFLILASIGFEFSNVFY  136 (438)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHhhhhhccCCCcchHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHhcchhheeh
Confidence            34488888999999999999999999999966554 4445555566666666554  44 4455557777776666664 


Q ss_pred             HHHHhhhccchhhhHHHHHHHHHHHHHHhHHHHhh--hhhcCCCCCCCC-cccccccccCCcchhhHHHHHHHHHHHHHH
Q 015847          156 KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALG--GFLAQPAEKYPN-LFSSESLFGKFPYFLPCLCISLFAFGVTIA  232 (399)
Q Consensus       156 ~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~i~--~~l~~~~~~~~~-~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~  232 (399)
                      .+++.+..++++-++..+.-.....+|+.+.-.+.  +.......+.+. .++-.... ...-+..+.+.++-.++..+-
T Consensus       137 ds~L~~~~~k~~~~riS~lg~~~gylgs~i~li~~~~~~~~~~~~~~~~~l~~l~~~~-~~~~ri~~~l~A~W~li~~iP  215 (438)
T COG2270         137 DSMLPRLTTKDNMGRISGLGWALGYLGSVILLIFVVLGFALGQQTGITIILLGLPPAD-GEDVRITGLLAALWWLLFALP  215 (438)
T ss_pred             hhHhhhhcCccccCcccccccccccccchHHHHHHHHHHhcccccceeEEeeccCccc-cccchhHHHHHHHHHHHHHhH
Confidence            99999999998888877776666666666554443  222111111100 01111112 334555556666665554433


Q ss_pred             -HHhcccCCCCCCCCCCccchhhhhhhhhhhhhhhccccCCcccccccccchhHHHHHHHHHHHhhhhhHHHHHHHhhcC
Q 015847          233 -AFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANS  311 (399)
Q Consensus       233 -~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  311 (399)
                       ++..++.++...+..   ....+..+           +.....++..+++++...++..+++.=...+...+-..|...
T Consensus       216 m~~~v~~~~~~~~~~~---~~l~~g~k-----------~L~~t~k~i~~~~~i~~FLiA~~~~~DGv~til~~~~~fg~~  281 (438)
T COG2270         216 MILNVHDAEKISSPPP---TALRNGFK-----------ELKSTFKEIRGRKNLVLFLIARFFYIDGVNTILAMGGVFGAA  281 (438)
T ss_pred             HHhcccccccccccch---HHHHHHHH-----------HHHHHHHHHhcccchHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence             344444432110110   11001111           112245566677788888888888887777777777777775


Q ss_pred             CcccCccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHhHHhHHHH
Q 015847          312 PKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIAM  376 (399)
Q Consensus       312 ~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  376 (399)
                      .     +|++..+...+.....+..+++.+ +.+++++|++.|+++..+.++..+..+...+...
T Consensus       282 ~-----~gls~~~lll~g~~~~vvA~lg~i-i~g~Ld~rfg~k~vl~~~lvi~~~~~~~~~~~~~  340 (438)
T COG2270         282 D-----LGLSSTELLLIGIALSVVAALGAI-IAGFLDERFGSKPVLMIGLVILSIAALYLIFLEG  340 (438)
T ss_pred             H-----cCccHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhCCceeehHHHHHHHHHHHHHHHccc
Confidence            5     899999999999999999999995 8899999999999988888777666555444433

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=99.40  E-value=5.3e-12  Score=117.26  Aligned_cols=146  Identities=15%  Similarity=0.129  Sum_probs=118.3

Q ss_pred             HHHHHHHHHHhhccccchhhhHHHHHHHhccCccccchhhhhhHHHHHHHHHHHhhhhcccccccccCCchhhHHHHHHH
Q 015847           43 LFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASV  122 (399)
Q Consensus        43 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~  122 (399)
                      ++......++............|.+.+|.|.++.+      .|...+...++..+..++.|++.||+|+|+.+..+.++.
T Consensus       207 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~s~~~------~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~l~~~~~~~  280 (382)
T PRK11128        207 VWRFLLCVSLLQGSHAAYYGFSAIYWQAAGYSAST------IGYLWSLGVVAEVLIFAFSNRLFRRWSARDLLLLSAICG  280 (382)
T ss_pred             HHHHHHHHHHHHHHhHhHHHHHHHHHHHCCCCHhH------HHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
Confidence            33333334444444444556667666788999888      899999999999999999999999999999999999998


Q ss_pred             HHHHHHHhccchHHHHHHHHHHHhhhccchhhH-HHHHhhhccchhhhHHHHHHH-HHHHHHHhHHHHhhhhhcC
Q 015847          123 VIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVS-TAWGIGLIIGPALGGFLAQ  195 (399)
Q Consensus       123 ~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~-~~~~~~~~~~~~r~~~~~~~~-~~~~~g~~~~p~i~~~l~~  195 (399)
                      +++.+..+..++.+.+++..++.|++.+...+. ..++.+. +++++++..+..+ ....+|..+||.++|.+.+
T Consensus       281 ~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~ig~~i~G~l~~  354 (382)
T PRK11128        281 VVRWGLMGSTTALPWLIVIQILHCGTFTVCHLAAMRYIAAR-PGSEVIRLQALYSALAMGGSIAIMTVLSGFLYQ  354 (382)
T ss_pred             HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            888888888899999999999999998877775 7777776 5666788899885 6677888999999999998

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=99.40  E-value=7.6e-12  Score=119.58  Aligned_cols=174  Identities=17%  Similarity=0.176  Sum_probs=123.9

Q ss_pred             HHHHHHHHhhccccchhhhHHHHHHHhccCccccchhhhhhHHHHHHHHHHHhhhhcccccccccCCchhhHHHHHHHHH
Q 015847           45 SIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVI  124 (399)
Q Consensus        45 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~  124 (399)
                      ...+..+.............|.+.+++|.+..+      .++......++..++.++.|+++||+|||+.+..+.++.++
T Consensus       288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~------~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~  361 (481)
T TIGR00879       288 GVVLQWFQQFTGINAIMYYSPTIFENAGVSTDH------AFLVSIIVGAVNFAFTFVAIFLVDRFGRRPLLLIGAAGMAI  361 (481)
T ss_pred             HHHHHHHHHHhCCeehHHHHHHHHHHcCCCchH------HHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence            334444444445556667778888899999877      88899999999999999999999999999999998888777


Q ss_pred             HHHHHhc-----cc------hHHHHHHHHHHHhhhccchhh-HHHHHhhhccchhhhHHHHHHHHHHHHHHhHHHHhhhh
Q 015847          125 FNTLFGL-----SV------NFWMAVLTRFLLGSLNGLLGP-IKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGF  192 (399)
Q Consensus       125 ~~~~~~~-----~~------~~~~l~~~r~l~G~~~~~~~~-~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~i~~~  192 (399)
                      +.++.++     .+      +...+....+..+.......+ ...++.|.+|+++|++++++.+....+|..++|.+.+.
T Consensus       362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~lg~~i~~~~~~~  441 (481)
T TIGR00879       362 CLFVLGILGASFVTGSSKSSGNVAIVFILLFIAFFAMGWGPVPWVIVSEIFPLSLRPKGISIAVAANWLANFIVGFLFPT  441 (481)
T ss_pred             HHHHHHHHhhcccCCcccchhHHHHHHHHHHHHHHHccccCeehhhhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7666652     11      222333333333322222334 37788999999999999999999999999999999999


Q ss_pred             hcCCCCCCCCcccccccccCCcchhhHHHHHHHHHHHHHH-HHhcccCC
Q 015847          193 LAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIA-AFWLPETL  240 (399)
Q Consensus       193 l~~~~~~~~~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~-~~~~~e~~  240 (399)
                      +.+       ..+|+..|         .+.++++++..+. .++.||++
T Consensus       442 ~~~-------~~~~~~~f---------~~~~~~~~~~~i~~~~~~~~~~  474 (481)
T TIGR00879       442 MLE-------SIGVGGVF---------IFFGGLNVLGLIFVYFFLPETK  474 (481)
T ss_pred             HHH-------hcCcccee---------hhHHHHHHHHHHHHheecccCC
Confidence            987       34454444         5555555554444 34456544

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>TIGR00883 2A0106 metabolite-proton symporter

Probab=99.39  E-value=1e-12  Score=122.36  Aligned_cols=147  Identities=20%  Similarity=0.215  Sum_probs=110.9

Q ss_pred             HHHHHHHHHHhhccccchhhhHHHHH-HHhccCccccchhhhhhHHHHHHHHHHHhhhhcccccccccCCchhhHHHHHH
Q 015847           43 LFSIWIIVLCTALPISSLFPFLYFMI-KDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTAS  121 (399)
Q Consensus        43 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~  121 (399)
                      +.......++............|.+. +++|.++.+      .+...+...++..++.++.|+++||+|||+.+..+..+
T Consensus       221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~------~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~  294 (394)
T TIGR00883       221 FLLGLGLVIATTTTFYLITTYLPTYLTQTLGLSANS------ALLVLMLSLILFFITIPLSGALSDRIGRRPVLIIFTVL  294 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhH------HHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHH
Confidence            34444444444555555666777665 678888888      89999999999999999999999999999987755544


Q ss_pred             HHHHH--HHHhc--cchHHHHHHHHHHHhhhccchhh-HHHHHhhhccchhhhHHHHHH-HHHHHHHHhHHHHhhhhhcC
Q 015847          122 VVIFN--TLFGL--SVNFWMAVLTRFLLGSLNGLLGP-IKAYACEIFREEHQALGLSTV-STAWGIGLIIGPALGGFLAQ  195 (399)
Q Consensus       122 ~~~~~--~~~~~--~~~~~~l~~~r~l~G~~~~~~~~-~~~~~~~~~~~~~r~~~~~~~-~~~~~~g~~~~p~i~~~l~~  195 (399)
                      ..+..  +...+  .++.+.++...++.|++.+...+ ..+++.|.+|+++|++++++. +....+|..++|.++|.+.+
T Consensus       295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~~p~~~g~l~~  374 (394)
T TIGR00883       295 AALLAVPLLMALLDSGSFTLFFFLVLGLALIGGMYTGPMGSFLPELFPTEVRYTGASLAYNLAGAIFGGFAPYIAAALVA  374 (394)
T ss_pred             HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhhhHHHHHHHhCCccceeeEeeehhHhHHHHHhhHHHHHHHHHHH
Confidence            43332  12222  24666677777888887766655 599999999999999999984 56677899999999999998

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>TIGR00895 2A0115 benzoate transport

Probab=99.37  E-value=3.5e-12  Score=118.96  Aligned_cols=141  Identities=20%  Similarity=0.259  Sum_probs=111.6

Q ss_pred             HHHHHHhhccccchhhhHHHHHHHhccCccccchhhhhhHHHHHHHHHHHhhhhcccccccccCCchhhHHHHHHHHHHH
Q 015847           47 WIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFN  126 (399)
Q Consensus        47 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~  126 (399)
                      +...++..........+.|.+.+++|.+..+      .++..+...++..++.++.|+++||+|||+.+....+......
T Consensus       256 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~------~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  329 (398)
T TIGR00895       256 WLLYFMLLVGVYFLTNWLPKLMVELGFSLSL------AATGGALFNFGGVIGSIIFGWLADRLGPRVTALLLLLGAVFAV  329 (398)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHH
Confidence            3334444444555566778888899999888      9999999999999999999999999999955544444433333


Q ss_pred             HHHhccchHHHHHHHHHHHhhhccchhhH-HHHHhhhccchhhhHHHHHHHHHHHHHHhHHHHhhhhh
Q 015847          127 TLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFL  193 (399)
Q Consensus       127 ~~~~~~~~~~~l~~~r~l~G~~~~~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~i~~~l  193 (399)
                      ++....++.+.+++..++.|++.+...+. .+++.|.+|+++|++++|+......+|..+||.++|++
T Consensus       330 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~G~l  397 (398)
T TIGR00895       330 LVGSTLFSPTLLLLLGAIAGFFVNGGQSGLYALMALFYPTAIRATGVGWAIGIGRLGAIIGPILAGYL  397 (398)
T ss_pred             HHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHhc
Confidence            33333567777778888999987777664 99999999999999999999999999999999999876

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=99.37  E-value=5.4e-12  Score=119.81  Aligned_cols=171  Identities=13%  Similarity=0.080  Sum_probs=109.2

Q ss_pred             HHHHHHHHHHhhccccchhhhHHHHHH-HhccCccccchhhhhhHHHHHHHHHHHhhhhccccccccc--CCchhh-HHH
Q 015847           43 LFSIWIIVLCTALPISSLFPFLYFMIK-DFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRY--GRKPVI-IMG  118 (399)
Q Consensus        43 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~dr~--Grr~~l-~~~  118 (399)
                      ++...+..++..........++|.+.+ +.|.+..+      .++....+.++..++.++.|+++||+  +||+.. ...
T Consensus       255 ~~~~~l~~~~~~~~~~~~~~~~P~~l~~~~g~s~~~------~~~~~~~~~~~~~~g~~~~G~l~dr~~~~r~~~~~~~~  328 (452)
T PRK11273        255 LWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDK------SSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFF  328 (452)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHccCCcchHHHHH
Confidence            344444444444444556677886665 47888888      88888899999999999999999999  555432 222


Q ss_pred             HHHHHHHHHHHhc--cchHHHHHHHHHHHhhhccc-hhhHHHHHhhhccchhhhHHHHHHHHHHHHHHhH-HHHhhhhhc
Q 015847          119 TASVVIFNTLFGL--SVNFWMAVLTRFLLGSLNGL-LGPIKAYACEIFREEHQALGLSTVSTAWGIGLII-GPALGGFLA  194 (399)
Q Consensus       119 ~~~~~~~~~~~~~--~~~~~~l~~~r~l~G~~~~~-~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~-~p~i~~~l~  194 (399)
                      ..+..++.+...+  ..+.+...++.++.|.+... ......+..|.+|+++||+++|+.+....+|+.+ +|.+.|.+.
T Consensus       329 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~g~~v~g~l~  408 (452)
T PRK11273        329 MTLVTIATIVYWLNPAGNPTVDMACMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTV  408 (452)
T ss_pred             HHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHhHHHHHHHHHHHHcChhhhhhHHHHHHHHHHHHHHHhhhhhHHHHH
Confidence            2233333322222  23444444444555543222 2223456789999999999999998888887654 799999999


Q ss_pred             CCCCCCCCcccccccccCCcchhhHHHHHHHHHHHHHHHHh
Q 015847          195 QPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFW  235 (399)
Q Consensus       195 ~~~~~~~~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~  235 (399)
                      +       .+||+         ..+.+.++.+++.++....
T Consensus       409 ~-------~~g~~---------~~f~~~~~~~~~~~~~~~~  433 (452)
T PRK11273        409 D-------FFGWD---------GGFMVMIGGSILAVILLIV  433 (452)
T ss_pred             H-------Hhcch---------HHHHHHHHHHHHHHHHHHH
Confidence            8       44444         4446666655555444433

>PRK11663 regulatory protein UhpC; Provisional

Probab=99.36  E-value=1.7e-11  Score=115.86  Aligned_cols=168  Identities=13%  Similarity=0.017  Sum_probs=108.4

Q ss_pred             HHHHHHHHHHhhccccchhhhHHHHH-HHhccCccccchhhhhhHHHHHHHHHHHhhhhccccccccc--CCchhh-HHH
Q 015847           43 LFSIWIIVLCTALPISSLFPFLYFMI-KDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRY--GRKPVI-IMG  118 (399)
Q Consensus        43 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~dr~--Grr~~l-~~~  118 (399)
                      ++.+....++..........++|.+. +++|.+..+      .+...+.+.++..++.++.|+++||+  ++|+.. ...
T Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~------a~~~~~~~~~~~~~g~~~~g~l~dr~~~~~r~~~~~~~  318 (434)
T PRK11663        245 IWLLSFSYVLVYVVRAAINDWGNLYMSETLGVDLVT------ANSAVSMFELGGFIGALVAGWGSDKLFNGNRGPMNLIF  318 (434)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCHHH------HHHHHHHHHHHHHHHHHHHhhhHHHhccCCccHHHHHH
Confidence            33344444444444455566777665 668999988      89999999999999999999999999  333332 221


Q ss_pred             H---HHHHHHHHHHhccchHHHHHHHHHHHhhhccchh-hHHHHHhhhccchhhhHHHHHHHHHHHHHHhHHHHhhhhhc
Q 015847          119 T---ASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLG-PIKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLA  194 (399)
Q Consensus       119 ~---~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~-~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~i~~~l~  194 (399)
                      .   ....+...... ..+........+..|++..... .......|.+|+++|++++|+.+....+|..++|.+.|++.
T Consensus       319 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~p~~~g~l~  397 (434)
T PRK11663        319 AAGILLSVGSLWLMP-FASYVMQAACFFTIGFFVFGPQMLIGMAAAECSHKEAAGAATGFVGLFAYLGAALSGYPLAKVL  397 (434)
T ss_pred             HHHHHHHHHHHHHcc-cccHHHHHHHHHHHHHHHhhHHHHHHHHHHhcccHhhHHhHHHHHHHHHHHHHHHhcccHHHHH
Confidence            1   11111112222 2333333334444454322222 23556789999999999999999999999999999999999


Q ss_pred             CCCCCCCCcccccccccCCcchhhHHHHHHHHHHHHHHH
Q 015847          195 QPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAA  233 (399)
Q Consensus       195 ~~~~~~~~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~  233 (399)
                      +       ..||         ...+...++++++..+..
T Consensus       398 ~-------~~g~---------~~~f~~~~~~~~~~~~~~  420 (434)
T PRK11663        398 E-------IWHW---------TGFFVVISIAAGISALLL  420 (434)
T ss_pred             H-------hccc---------HHHHHHHHHHHHHHHHHH
Confidence            8       3444         444466666665544433

>TIGR00891 2A0112 putative sialic acid transporter

Probab=99.35  E-value=5e-12  Score=118.29  Aligned_cols=130  Identities=18%  Similarity=0.246  Sum_probs=104.4

Q ss_pred             hhhhHHH-HHHHhccCccccchhhhhhHHHHHHHHHHHhhhhcccccccccCCchhhHHHHHHHHHHH-HHHhccchHHH
Q 015847           60 LFPFLYF-MIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFN-TLFGLSVNFWM  137 (399)
Q Consensus        60 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~-~~~~~~~~~~~  137 (399)
                      .....|. +.+++|.+..+      .+++.+...++..++.++.|++.||+|||+.+.++.++..+.. ......++.+.
T Consensus       257 ~~~~~~~~~~~~~g~s~~~------~~~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  330 (405)
T TIGR00891       257 IQDLLPTYLKADLGLSPHT------VANIVVFSNIGAIVGGCVFGFLGDWLGRRKAYVCSLLAGQLLIIPVFAIGANVAV  330 (405)
T ss_pred             hhhhhHHHHHHHhCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHhCchhhhHHHHHHHHHHHHHHHHhCCchHH
Confidence            3445554 44678999888      9999999999999999999999999999999988877653333 23334556666


Q ss_pred             HHHHHHHHhhhccchhh-HHHHHhhhccchhhhHHHHHHHHHHHHHHhHHHHhhhhhcC
Q 015847          138 AVLTRFLLGSLNGLLGP-IKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQ  195 (399)
Q Consensus       138 l~~~r~l~G~~~~~~~~-~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~i~~~l~~  195 (399)
                      +.+..++.|+..+...+ ..+++.|.+|+++|++++|+.+....+|..++|+++|++.+
T Consensus       331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~g~~~~g~l~~  389 (405)
T TIGR00891       331 LGLGLFFQQMLVQGIWGILPKHLGEYFPTDQRAAGLGFTYQLGNLGGALAPIIGALLAQ  389 (405)
T ss_pred             HHHHHHHHHHHHccchhhHHHHHhhhCCcchhHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            66666777765444444 58889999999999999999999999999999999999998

>TIGR00900 2A0121 H+ Antiporter protein

Probab=99.35  E-value=3.1e-12  Score=117.83  Aligned_cols=128  Identities=16%  Similarity=0.185  Sum_probs=114.0

Q ss_pred             hhHHHHHHH-hccCccccchhhhhhHHHHHHHHHHHhhhhcccccccccCCchhhHHHHHHHHHHHHHHhccch-HHHHH
Q 015847           62 PFLYFMIKD-FQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVN-FWMAV  139 (399)
Q Consensus        62 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~-~~~l~  139 (399)
                      ...|.+.++ +|.+..+      .++..+...++..++.++.+++.||+|||+.+..+..+.+++.+...+.++ .+.++
T Consensus       232 ~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  305 (365)
T TIGR00900       232 ALFPYVQSKYLGRGSTH------YGWVLAAFGLGALLGALLLGLLGRYFKRMALMTGAIFVIGLAILVVGLTPPNFPLFL  305 (365)
T ss_pred             HHhHHHHHHHhCCchHH------HHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHhhchhHHHHH
Confidence            566777665 8988888      999999999999999999999999999999999888888888777777764 88888


Q ss_pred             HHHHHHhhhccchhhH-HHHHhhhccchhhhHHHHHHHHHHHHHHhHHHHhhhhhcC
Q 015847          140 LTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQ  195 (399)
Q Consensus       140 ~~r~l~G~~~~~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~i~~~l~~  195 (399)
                      +..++.|++.+...+. .+++.|.+|+++|++..++.+....+|..++|.++|.+.+
T Consensus       306 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~g~l~~  362 (365)
T TIGR00900       306 VLWFAIGVGYGPINVPQGTLLQRRVPAELLGRVFGAQFSLSHAAWPLGLILAGPLAD  362 (365)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8899999998887775 8999999999999999999999999999999999999987

>PRK12307 putative sialic acid transporter; Provisional

Probab=99.35  E-value=1.1e-11  Score=116.80  Aligned_cols=130  Identities=19%  Similarity=0.229  Sum_probs=98.8

Q ss_pred             hhhhHHHHHHHhccCccccchhhhhhHHHHHHHHHHHhhhhcccccccccCCchhhHHHHHHHHHHHHHHhccchHHHHH
Q 015847           60 LFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAV  139 (399)
Q Consensus        60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~  139 (399)
                      +...+|.+.++.|.+..+      .+...+...++..++.++.|++.||+|||+.+..+.++..+..+.....++.....
T Consensus       250 ~~~~~~~~~~~~g~~~~~------~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  323 (426)
T PRK12307        250 IFGLLPTYLAGEGFDTGV------VSNLMTAAAFGTVLGNIVWGLCADRIGLKKTFSIGLLMSFLFIFPLFRIPQDNYLL  323 (426)
T ss_pred             HHHHHHHHHHHcCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHccccHHH
Confidence            455677777778888877      88888999999999999999999999999999888877766655443322211122


Q ss_pred             HHHHHHhh--hccchhh-HHHHHhhhccchhhhHHHHHHHHHHHHHHhHHHHhhhhhcC
Q 015847          140 LTRFLLGS--LNGLLGP-IKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQ  195 (399)
Q Consensus       140 ~~r~l~G~--~~~~~~~-~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~i~~~l~~  195 (399)
                      +.-.+.|.  +.....+ ...++.|.+|+++|++++|+......+|+.++|.+.+++.+
T Consensus       324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~~~~gp~~~g~l~~  382 (426)
T PRK12307        324 LGACLFGLMATNVGVGGLVPKFLYDYFPLEVRGLGTGLIYNLAATSGTFNSMAATWLGI  382 (426)
T ss_pred             HHHHHHHHHHhcccHhHHHHHHHHHhCcHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHH
Confidence            22233333  2222333 47788999999999999999999999999999999999987

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=99.34  E-value=4.7e-11  Score=107.53  Aligned_cols=172  Identities=15%  Similarity=0.150  Sum_probs=131.0

Q ss_pred             hhHHHHHHHHHHHhhccccchhhhH-HHHHHHhccCccccchhhhhhHHHHHHHHHHHhhhhcccccccccCCchhhHHH
Q 015847           40 ITELFSIWIIVLCTALPISSLFPFL-YFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMG  118 (399)
Q Consensus        40 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~dr~Grr~~l~~~  118 (399)
                      ++.+.......++...+......++ |.+.+..|.+.+.      ++++...+.++..+++.+.|+++|| +.|+.+...
T Consensus       210 ~p~v~~~l~~t~l~~~g~F~~ftYi~P~L~~v~g~s~~~------vs~~Ll~~Gv~~~~Gn~~gGrl~dr-~~~~~l~~~  282 (394)
T COG2814         210 RPGVLLGLLATFLFMTGHFALYTYIRPFLESVAGFSVSA------VSLVLLAFGIAGFIGNLLGGRLADR-GPRRALIAA  282 (394)
T ss_pred             CchHHHHHHHHHHHHcchhhhHHhHHHHHHHccCCCHhH------HHHHHHHHHHHHHHHHHHHhhhccc-cchhHHHHH
Confidence            3455555556666666666556665 5666778999999      9999999999999999999999999 989988888


Q ss_pred             HHHHHHHHHHHhc-cchHHHHHHHHHHHhhhccchhhH-HHHHhhhccchhhhHHHHHHHHHHHHHHhHHHHhhhhhcCC
Q 015847          119 TASVVIFNTLFGL-SVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQP  196 (399)
Q Consensus       119 ~~~~~~~~~~~~~-~~~~~~l~~~r~l~G~~~~~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~i~~~l~~~  196 (399)
                      ..+.++..+.+.+ .++.+..++.-++.|++.+..... ...+++ ..|+.+..+.++.....++|..+|..++|.+.+ 
T Consensus       283 ~~l~a~~~l~l~~~~~~~~~~~~~~~~wg~a~~~~~~~~~~~~a~-~~p~~~~~a~sl~~aa~nlgia~GA~lGG~v~~-  360 (394)
T COG2814         283 LLLLALALLALTFTGASPALALALLFLWGFAFSPALQGLQTRLAR-LAPDAADLAGSLNVAAFNLGIALGAALGGLVLD-  360 (394)
T ss_pred             HHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhhhhhhHHHHHhcc-cCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence            7777777666555 455556666666777765554443 666666 556889999999999999999999999999999 


Q ss_pred             CCCCCCcccccccccCCcchhhHHHHHHHHHHHHHHHHh
Q 015847          197 AEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFW  235 (399)
Q Consensus       197 ~~~~~~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~  235 (399)
                                     ++++....+..+++.++.+...+.
T Consensus       361 ---------------~~g~~~~~~~~a~l~~~a~~~~~~  384 (394)
T COG2814         361 ---------------ALGYAATGWVGAALLLLALLLALL  384 (394)
T ss_pred             ---------------hhchHHHHHHHHHHHHHHHHHHHH
Confidence                           555666667777777776655444

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=99.31  E-value=3e-11  Score=116.30  Aligned_cols=179  Identities=15%  Similarity=0.036  Sum_probs=108.5

Q ss_pred             cchhhhHHHHHHHhccCccccchh-----hh-hhHHHHHHHHHHHhhhhcccccccccCCchhhHHHHHHHHHHHHHHhc
Q 015847           58 SSLFPFLYFMIKDFQIAKREEDIG-----SY-AGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGL  131 (399)
Q Consensus        58 ~~~~~~~~~~~~~~~~~~~~~~~~-----~~-~~~~~~~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~  131 (399)
                      +......|.+.++.|.+..+....     .. .........++..++.++.++++||+|||++++++.++.+++.++.++
T Consensus       305 y~~~~~~p~i~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l~dr~gRR~~l~~~~~~~~~~~~~l~~  384 (502)
T TIGR00887       305 YGVNLNQKVILSAIGYSPPAATNNAYEELYKTAVGNLIIALAGTVPGYWVTVFLVDIIGRKPIQLMGFFILTVLFFVLGF  384 (502)
T ss_pred             HccccccHHHHHHHcCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHH
Confidence            344455787778888875431000     00 011233444566678889999999999999998888777776655554


Q ss_pred             cc----hHHHHHHHHHHHhhh-ccchhhHHHHHhhhccchhhhHHHHHHHHHHHHHHhHHHHhhhhhcCCCCCCCCcccc
Q 015847          132 SV----NFWMAVLTRFLLGSL-NGLLGPIKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSS  206 (399)
Q Consensus       132 ~~----~~~~l~~~r~l~G~~-~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~i~~~l~~~~~~~~~~~gw  206 (399)
                      ..    +...+...-+...++ .+.....+.+.+|.+|.+.|++++|+.+....+|..++|.+.+++.+..+.   ..|+
T Consensus       385 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~p~~~R~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~  461 (502)
T TIGR00887       385 AYNHLSTHGFLAIYVLAQFFANFGPNATTFIVPGEVFPTRYRSTAHGISAASGKAGAIIGQFGFLYLAQHGDP---TKGY  461 (502)
T ss_pred             HHHhcchhHHHHHHHHHHHHHhcCCCchhhhhhhccCchhHHHHHHHHHHHHhhhHHHHHHHHhhhhhccccc---cccc
Confidence            32    111111111112222 222233477789999999999999999999999999999999999872210   0000


Q ss_pred             cccccCCcchhhHHHHHHHHHHHHHHHHhcccCCCC
Q 015847          207 ESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHR  242 (399)
Q Consensus       207 ~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~  242 (399)
                      ..   ..++...+.+.++..++..+..+++||++.+
T Consensus       462 ~~---~~~~~~~~~i~~~~~~~~~i~~~~lpEt~~~  494 (502)
T TIGR00887       462 PT---GIWMGHVLEIFALFMFLGILFTLLIPETKGK  494 (502)
T ss_pred             cc---cccchHHHHHHHHHHHHHHHHheEeccCCCC
Confidence            00   1123334455555555555555677987654

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>PRK10504 putative transporter; Provisional

Probab=99.31  E-value=3e-11  Score=115.50  Aligned_cols=147  Identities=16%  Similarity=0.188  Sum_probs=114.6

Q ss_pred             HHHHHHHHHHhhccccchhhhHHHHHH-HhccCccccchhhhhhHHHHHHHHHHHhhhhcccccccccCCchhhHHHHHH
Q 015847           43 LFSIWIIVLCTALPISSLFPFLYFMIK-DFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTAS  121 (399)
Q Consensus        43 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~  121 (399)
                      +.......++............|++.+ .+|.++.+      .++......++..++.++.|++.||+|||+++..+..+
T Consensus       263 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~------~g~~~~~~~~~~~~~~~~~~~l~~r~g~~~~~~~~~~~  336 (471)
T PRK10504        263 FSLGLAGSFAGRIGSGMLPFMTPVFLQIGLGFSPFH------AGLMMIPMVLGSMGMKRIVVQVVNRFGYRRVLVATTLG  336 (471)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHH
Confidence            334444444445544555566776665 57888888      88888888888888889999999999999999988887


Q ss_pred             HHHHHHHHhcc---chHHHHHHHHHHHhhhccchhh-HHHHHhhhccchhhhHHHHHHHHHHHHHHhHHHHhhhhhcC
Q 015847          122 VVIFNTLFGLS---VNFWMAVLTRFLLGSLNGLLGP-IKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQ  195 (399)
Q Consensus       122 ~~~~~~~~~~~---~~~~~l~~~r~l~G~~~~~~~~-~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~i~~~l~~  195 (399)
                      .++..++..+.   ++.+.+.+..++.|++.+...+ ...+..+..|+++|+.++++.+....+|..+|+.+++.+.+
T Consensus       337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g~ll~  414 (471)
T PRK10504        337 LALVSLLFMLVALLGWYYLLPFVLFLQGMVNSTRFSSMNTLTLKDLPDNLASSGNSLLSMIMQLSMSIGVTIAGLLLG  414 (471)
T ss_pred             HHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHhccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            77776655543   3344445566777887777665 48888899999999999999999999999999999999877

>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.31  E-value=5e-11  Score=110.61  Aligned_cols=177  Identities=18%  Similarity=0.228  Sum_probs=123.7

Q ss_pred             HHHHHHHhhccccchhhhHHHHHHHhccCccccchhhhhhHHHHHHHHHHHhhhhcccccccccCCchhhHHHHHHHHHH
Q 015847           46 IWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIF  125 (399)
Q Consensus        46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~  125 (399)
                      +.+.......+.+.+..+...+.++-|++..+      .-+......+...+..+++..+.||+|||+.++.+..+..+.
T Consensus       275 ~~v~~~qq~sGi~ai~~Yst~i~~~aG~~~~~------a~~an~~~g~v~~~~t~~~~~lid~~gRRpLll~~~~~~~~~  348 (485)
T KOG0569|consen  275 IVVSFAQQFSGINAIFFYSTSIFKTAGFTPEE------AQYANLGIGIVNLLSTLVSPFLIDRLGRRPLLLISLSLMAVA  348 (485)
T ss_pred             HHHHHHHHhcCcceeHHHHHHHHHHcCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHH
Confidence            33334444446667777777888999999998      889999999999999999999999999999999999988888


Q ss_pred             HHHHhccc----hH--HH---HHHHHHHHhhhccc-hhh-HHHHHhhhccchhhhHHHHHHHHHHHHHHhHHHHhhhhhc
Q 015847          126 NTLFGLSV----NF--WM---AVLTRFLLGSLNGL-LGP-IKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLA  194 (399)
Q Consensus       126 ~~~~~~~~----~~--~~---l~~~r~l~G~~~~~-~~~-~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~i~~~l~  194 (399)
                      .+++....    ..  |.   .+++.++..+..+. ..| .+-+.+|.+|++.|..++++.....-+...+-...-..+.
T Consensus       349 ~~~~~~~~~l~~~~~~~~~y~~i~~~~~~~~~f~~G~gpi~~fi~aELf~~~~R~aa~s~~~~~~w~~~fiv~~~fp~l~  428 (485)
T KOG0569|consen  349 LLLMSIALFLSNSFGSWLSYLCIAAIFLFIISFAIGPGPIPWFIGAELFPQSARSAAQSVATAVNWLSNFIVGFAFPPLQ  428 (485)
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhcCCCchhHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            77665431    11  11   23333444444333 345 4889999999999999999988888887776666666665


Q ss_pred             CCCCCCCCcccccccccCCcchhhHHHHHHHHHHHHHHHHhcccCCCCCC
Q 015847          195 QPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHN  244 (399)
Q Consensus       195 ~~~~~~~~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~  244 (399)
                      +                .++-.....+.+...+..+..+..+||++.+..
T Consensus       429 ~----------------~~g~~~filF~i~~~~~~i~~~~~lPETkgr~~  462 (485)
T KOG0569|consen  429 N----------------VIGPYVFILFVIPLAIFLIYLYRYLPETKGRTP  462 (485)
T ss_pred             H----------------HhcchhhHHHHHHHHHHHHHHHHhCcccCCCCH
Confidence            5                111111122333333445666888999976543

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=99.30  E-value=8.3e-11  Score=112.08  Aligned_cols=136  Identities=18%  Similarity=0.271  Sum_probs=121.1

Q ss_pred             hccccchhhhHHHHH-HHhccCccccchhhhhhHHHHHHHHHHHhhhhcccccccccCCchhhHHHHHHHHHHHHHHhcc
Q 015847           54 ALPISSLFPFLYFMI-KDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLS  132 (399)
Q Consensus        54 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~  132 (399)
                      ++....+...+|.+. +++|.+...      .|++.++..+|.+++.+..+++.+|+++++.+..+.++.+++.+..+++
T Consensus       231 ~l~~~a~~aLlPl~a~~~l~~~a~~------yGll~a~~gvGai~Gal~~~~l~~~~~~~~lv~~~~~~~a~~~~~lal~  304 (524)
T PF05977_consen  231 NLFASAVWALLPLFARDVLGGGASG------YGLLLAAFGVGAILGALLLPRLRRRLSSRRLVLLASLLFALALLLLALS  304 (524)
T ss_pred             HHhhhHHHHhhhHHHHHHhCCcHHH------HHHHHHHHHHHHHHHHHHHHHhhcccCcchhhHHHHHHHHHHHHHHhcc
Confidence            333444556678665 568888888      9999999999999999999999999999999999999999999999999


Q ss_pred             chHHHHHHHHHHHhhhccchhh-HHHHHhhhccchhhhHHHHHHHHHHHHHHhHHHHhhhhhcC
Q 015847          133 VNFWMAVLTRFLLGSLNGLLGP-IKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQ  195 (399)
Q Consensus       133 ~~~~~l~~~r~l~G~~~~~~~~-~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~i~~~l~~  195 (399)
                      ++.+..++..++.|++.....+ ..+.+.+..|++.||++++++.+....+..+|.++.|.+.+
T Consensus       305 ~~~~~~~~~l~l~G~~~~~~~~~~~t~~Q~~~P~~~~GRv~si~~~~~~g~~~lGsll~G~la~  368 (524)
T PF05977_consen  305 PSFWLALIALFLAGAAWIIANSSLNTLVQLSVPDWVRGRVFSIYQMVFFGGMPLGSLLWGFLAD  368 (524)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999998777666 48899999999999999999999999999999999999998

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions

Probab=99.30  E-value=5.9e-11  Score=111.86  Aligned_cols=177  Identities=13%  Similarity=0.170  Sum_probs=137.3

Q ss_pred             HHHHHHHHHHhhccccchhhhHHHH-HHHhccCccccchhhhhhHHHHHHHHHHHhhhhcccccccccCCc--hhhHHHH
Q 015847           43 LFSIWIIVLCTALPISSLFPFLYFM-IKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRK--PVIIMGT  119 (399)
Q Consensus        43 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~dr~Grr--~~l~~~~  119 (399)
                      +....++.++..-+.+.+......+ .+++|.+..+      ...+..+..+..+++++++|++.||+|.|  +++.++.
T Consensus       283 ~~~fLia~~l~~dg~~ti~~~~~i~a~~~lg~s~~~------l~~~~l~~~i~a~~Ga~~~g~l~~r~g~k~~~~l~~~l  356 (477)
T PF11700_consen  283 LFLFLIAYFLYSDGVNTIISFAGIYATEVLGMSTTQ------LIVFGLVVQIVAIIGALLFGWLQDRFGPKTKRTLLISL  356 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHH
Confidence            3334444444444445455555444 4689999999      88888899999999999999999999999  8888888


Q ss_pred             HHHHHHHHHHhc--------cchHHHHHHHHHHHhhhccchhhH-HHHHhhhccchhhhHHHHHHHHHHHHHHhHHHHhh
Q 015847          120 ASVVIFNTLFGL--------SVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALG  190 (399)
Q Consensus       120 ~~~~~~~~~~~~--------~~~~~~l~~~r~l~G~~~~~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~i~  190 (399)
                      +++.+.++...+        .++.+.+.+.-++.|+..|...+. .++.+|..|+++.+..+|++....-....+||++-
T Consensus       357 ~~~~~i~~~g~~G~~~~~~g~~~~~~f~~~a~~~G~~~G~~qs~sRs~~~~LiP~g~e~efFgly~i~gk~ss~lGPll~  436 (477)
T PF11700_consen  357 ILWIIIPLYGLFGFWPSFFGLKSPWEFWVLAVLIGLFMGGIQSASRSLFSRLIPPGREAEFFGLYAITGKASSWLGPLLF  436 (477)
T ss_pred             HHHHHHHHHHHHHhhhcccCcccHHHHHHHHHHHHHHhhhHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHH
Confidence            877655554444        577888999999999998888875 99999999999999999999999999999999999


Q ss_pred             hhhcCCCCCCCCcccccccccCCcchhhHHHHHHHHHHHHHHHHhcccCC
Q 015847          191 GFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETL  240 (399)
Q Consensus       191 ~~l~~~~~~~~~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~  240 (399)
                      |.+.+..+               +.|..+....++.++.++....+++++
T Consensus       437 g~i~~~tg---------------~~r~g~~~l~~lf~~gl~ll~~v~~~~  471 (477)
T PF11700_consen  437 GLITDATG---------------SQRYGFLFLLVLFLIGLILLFFVDVEK  471 (477)
T ss_pred             HHHHHHhC---------------CchhHHHHHHHHHHHHHHHHhhccchh
Confidence            99998432               134444666666666666666666543

Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.

>PRK11010 ampG muropeptide transporter; Validated

Probab=99.28  E-value=4.8e-10  Score=107.35  Aligned_cols=153  Identities=12%  Similarity=0.143  Sum_probs=113.4

Q ss_pred             HHHHHHhccCccccchhhhhhHHHH-HHHHHHHhhhhcccccccccCCchhhHHHHHHHHHHHHHH---hcc-chHHHHH
Q 015847           65 YFMIKDFQIAKREEDIGSYAGYVGS-SFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLF---GLS-VNFWMAV  139 (399)
Q Consensus        65 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~---~~~-~~~~~l~  139 (399)
                      |++.+++|.+..+      .++... ...++..++.++.|+++||+|+|+.+.++.++.++..+.+   +.. ++.+.+.
T Consensus       247 ~~l~~~~G~s~~~------~g~~~~~~g~i~~iiG~ll~G~L~dr~g~~~~l~i~~~l~~l~~l~~~~l~~~~~~~~~l~  320 (491)
T PRK11010        247 TFLIRGVGFDAGE------VGLVNKTLGLLATIVGALYGGILMQRLSLFRALMIFGILQGVSNAGYWLLSITDKNLYSMG  320 (491)
T ss_pred             HHHHHhcCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHH
Confidence            4445778999998      999874 5568999999999999999999988777666555443322   232 3555555


Q ss_pred             HHHHHHhhhccchhh-HHHHHhhhccchhhhHHHHHHHHHHHHHHhHHHHhhhhhcCCCCCCCCcccccccccCCcchhh
Q 015847          140 LTRFLLGSLNGLLGP-IKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLP  218 (399)
Q Consensus       140 ~~r~l~G~~~~~~~~-~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~i~~~l~~~~~~~~~~~gw~~~f~~~~~~~~  218 (399)
                      ..-++..++.|...+ ..++..+..+++.+++.+++.+...++|..+++.++|++.+       ..         +|...
T Consensus       321 ~~~~l~~~~~g~~~~~~~a~~~~l~~~~~~~t~~gl~~s~~~lg~~~~~~~~G~l~~-------~~---------G~~~~  384 (491)
T PRK11010        321 AAVFFENLCGGMGTAAFVALLMTLCNKSFSATQFALLSALSAVGRVYVGPVAGWFVE-------AH---------GWPTF  384 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH-------Hh---------ChHHH
Confidence            555665655555445 48888999999999999999999999999999999999998       33         44445


Q ss_pred             HHHHHHHHHHHHHHHHhcccC
Q 015847          219 CLCISLFAFGVTIAAFWLPET  239 (399)
Q Consensus       219 ~~~~~~~~~~~~~~~~~~~e~  239 (399)
                      +.+.++++++.++....++++
T Consensus       385 f~~~~~~~l~~l~~~~~~~~~  405 (491)
T PRK11010        385 YLFSVAAAVPGLLLLLVCRQT  405 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHhc
Confidence            577777777766666666654

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=99.28  E-value=2.5e-11  Score=113.33  Aligned_cols=132  Identities=16%  Similarity=0.103  Sum_probs=107.5

Q ss_pred             hhHHHHHHHHHHHhhhhcccccccccCCchhhHHHHHHHHHHHHHHhccchHHHHHHHHHHHhhhccchhh-HHHHHhhh
Q 015847           84 AGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGP-IKAYACEI  162 (399)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~-~~~~~~~~  162 (399)
                      .|...+...+...++.+..|++.||+|||+.+.++.++.++...+...+++.+.+++.+++.|++...... ...+..+.
T Consensus       256 ~g~~~~~~~i~~~~~~~~~g~l~~r~g~~~~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~  335 (396)
T TIGR00882       256 FGYVTTMGELLNALIMFCAPLIINRIGAKNALLIAGTIMSVRIIGSSFATTALEVVILKMLHAFEVPFLLVGCFKYITSQ  335 (396)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            78888888889999999999999999999999999998888888878888999888899999988655544 36677788


Q ss_pred             ccchhhhHHHHH-HHHHHHHHHhHHHHhhhhhcCCCCCCCCcccccccccCCcchhhHHHHHHHHHHHHH
Q 015847          163 FREEHQALGLST-VSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTI  231 (399)
Q Consensus       163 ~~~~~r~~~~~~-~~~~~~~g~~~~p~i~~~l~~~~~~~~~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~  231 (399)
                      .+++.+++..+. .+....+|..++|.++|++.+                .++|..++.+.++..++..+
T Consensus       336 ~~~~~~at~~~~~~~~~~~lg~~~~~~l~G~l~~----------------~~G~~~~f~~~~~~~~i~~~  389 (396)
T TIGR00882       336 FDVRLSATIYLIGFQFAKQLAMIFLSTLAGNMYD----------------SIGFQGAYLVLGCIVLLFTL  389 (396)
T ss_pred             CCcceEEEeehHHHHHHHHHHHHHHHHhHHHHHH----------------hcccHHHHHHHHHHHHHHHH
Confidence            888888887766 678899999999999999998                33455555666666555433

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=99.28  E-value=2.5e-11  Score=108.13  Aligned_cols=158  Identities=13%  Similarity=0.135  Sum_probs=124.3

Q ss_pred             hhHHHHHHHHHHHhhccccchhhhHH-HHHHHhccCccccchhhhhhHHHHHHHHHHHhhhhccccccccc--CCchhhH
Q 015847           40 ITELFSIWIIVLCTALPISSLFPFLY-FMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRY--GRKPVII  116 (399)
Q Consensus        40 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~dr~--Grr~~l~  116 (399)
                      .+.++.++++.++.++.+..+.-+.| ++.|+.|.|..+      .++..+.+-.+.+.+.+++|+++||+  |||.+..
T Consensus       251 Nk~iW~la~a~vfvYivR~gi~dW~p~YL~e~k~~s~~~------a~~a~~lfE~agl~G~Ll~GwlSDklfkgrR~p~~  324 (448)
T COG2271         251 NKLIWLLALANVFVYVVRYGINDWGPLYLSEVKGFSLVK------ANWAISLFEVAGLPGTLLAGWLSDKLFKGRRGPMA  324 (448)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcCCCHHH------HHHHHHHHHHHhhHHHHHHHHHHHHhcccccchHH
Confidence            35566788888888999999999999 556778999999      99999999999999999999999996  6776654


Q ss_pred             HH-HHHHHHHHHHHhccc--hHHHHHHHHHHHhhh-ccchhhHHHHHhhhccchhhhHHHHHHHHHHHH-HHhHHHHhhh
Q 015847          117 MG-TASVVIFNTLFGLSV--NFWMAVLTRFLLGSL-NGLLGPIKAYACEIFREEHQALGLSTVSTAWGI-GLIIGPALGG  191 (399)
Q Consensus       117 ~~-~~~~~~~~~~~~~~~--~~~~l~~~r~l~G~~-~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~-g~~~~p~i~~  191 (399)
                      +. .++..++.+..-+++  |++...++-++.|+. .|...-......|..|++--|++.|+.+.+..+ |...+....+
T Consensus       325 ~i~~~~i~~~~~~~w~~~~~~~~l~~~~l~~iGf~IyGPqmLiGl~a~e~~pK~AaGtA~Gf~Glf~Yl~Ga~~a~~~~g  404 (448)
T COG2271         325 LIFMLLITASLVLYWLAPNGSYLLDAILLFIIGFLIYGPQMLIGLAAAEFVPKKAAGTATGFVGLFAYLIGAALAGLPLG  404 (448)
T ss_pred             HHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHhhHHHHHHHHHhccccHhhccchhchhhhHHHHhhHHhcCCcce
Confidence            44 444444445555554  457777777888875 444444577789999999999999999888888 8888988889


Q ss_pred             hhcCCCCCCCCcccccccc
Q 015847          192 FLAQPAEKYPNLFSSESLF  210 (399)
Q Consensus       192 ~l~~~~~~~~~~~gw~~~f  210 (399)
                      ++.|       .+||...|
T Consensus       405 ~i~d-------~~gW~g~F  416 (448)
T COG2271         405 YIAD-------TWGWDGGF  416 (448)
T ss_pred             eeEe-------cCCCcchH
Confidence            9988       46666555

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=99.27  E-value=3.4e-11  Score=112.17  Aligned_cols=139  Identities=14%  Similarity=0.111  Sum_probs=100.8

Q ss_pred             HHhhccccchhhhHHHHHHHhccCccccchhhhhhHHHHHHHH-HHHhhhhcccccccccCCchhhHHHHHHHHHHHHHH
Q 015847           51 LCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMF-GRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLF  129 (399)
Q Consensus        51 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~  129 (399)
                      ++............+.+.+|.|.++++      +|++...... ...++.++.|++.||+|+|+.+..+..+.++..+..
T Consensus       218 ~l~~~~~~~~~~~~~~~l~~~G~s~~~------ig~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~  291 (390)
T TIGR02718       218 LLSAMTAVSGFGLSKLYLVDAGWPLEW------IGRLGMAGGAVTVLLGCGGGAWLVRRAGLWRTFILGVGLAGSLALLW  291 (390)
T ss_pred             HHHHHHHHHHHHHhhHHHHhcCCCHHH------HHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence            333333444445666677788999998      9998887764 666778999999999999999888776653332222


Q ss_pred             hc------cchHHHHHHHHHHHhhhccchhhH-HHHHhhhccc-hhhhHHHHHHHHHHHHHHhHHHHhhhhhcC
Q 015847          130 GL------SVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFRE-EHQALGLSTVSTAWGIGLIIGPALGGFLAQ  195 (399)
Q Consensus       130 ~~------~~~~~~l~~~r~l~G~~~~~~~~~-~~~~~~~~~~-~~r~~~~~~~~~~~~~g~~~~p~i~~~l~~  195 (399)
                      ..      .++...+.....+.+++.+...+. .+.+.+..++ +++++.++..+...++|..+||.++|.+.+
T Consensus       292 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lg~~~g~~~~G~l~~  365 (390)
T TIGR02718       292 FAQAAFWLAPGIAVAWSCSAFGSLITGITSVAIYTAFMRFAGDGDQAGTDVTAVQSTRDLGELIASSIAGYLTD  365 (390)
T ss_pred             HHHHHcccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            11      233344444455566666666554 7777777765 889999999999999999999999999998

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=99.27  E-value=1.1e-10  Score=112.00  Aligned_cols=133  Identities=17%  Similarity=0.141  Sum_probs=99.3

Q ss_pred             cccchhhhHHHHHHHhccCccccchhhhhhHHHHHHHHHHHhhhhcccccccccCCchhhHHHHHHHHHHHHHHhccc--
Q 015847           56 PISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSV--  133 (399)
Q Consensus        56 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~--  133 (399)
                      +.+......|.+.++.|.+...      ..+......++..++.++.|+++||+|||++++.+.++.+++.++++...  
T Consensus       286 ~~~~~~~~~p~i~~~~g~~~~~------~~~~~~~~~~~~~i~~~~~g~l~dr~g~r~~~i~~~~~~~v~~~~l~~~~~~  359 (479)
T PRK10077        286 GINVVLYYAPEIFKTLGASTDI------ALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYT  359 (479)
T ss_pred             ChhHHHHHHHHHHHHcCCCCch------HHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhHHHHHHHHHHHHHHHhc
Confidence            3444455668888889988776      67777778888899999999999999999999999998888877665421  


Q ss_pred             h-HH-HHHHHHHHHhhhccc-hhhH-HHHHhhhccchhhhHHHHHHHHHHHHHHhHHHHhhhhhc
Q 015847          134 N-FW-MAVLTRFLLGSLNGL-LGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLA  194 (399)
Q Consensus       134 ~-~~-~l~~~r~l~G~~~~~-~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~i~~~l~  194 (399)
                      + .+ ....+.++.+.+.+. ..+. .+++.|.+|+++|++++|+......+|..+++.+.+.+.
T Consensus       360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~p~~~  424 (479)
T PRK10077        360 QAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWIANYFVSWTFPMMD  424 (479)
T ss_pred             CcccHHHHHHHHHHHHHHhccccchhHHHhHhhCChhHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence            1 11 222233344443332 3454 899999999999999999999999999998877766554

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=99.27  E-value=2.3e-11  Score=116.07  Aligned_cols=154  Identities=10%  Similarity=0.056  Sum_probs=99.1

Q ss_pred             hhhhHHHH-HHHhccCccccchhhhhhHHHHHHHHHHHhhhhcccccccccCCc-------hhhHHHHHHHHHHHHHHhc
Q 015847           60 LFPFLYFM-IKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRK-------PVIIMGTASVVIFNTLFGL  131 (399)
Q Consensus        60 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~dr~Grr-------~~l~~~~~~~~~~~~~~~~  131 (399)
                      ....+|.+ .+++|.+..+      .+.+.+.+.++..++.++.|+++||+|||       ....+..++.++..++...
T Consensus       271 ~~~~~p~~l~~~~g~s~~~------a~~~~~~~~~~~~ig~~~~G~lsDr~~~r~~~~~r~~~~~~~~~l~~i~~~~~~~  344 (476)
T PLN00028        271 MDNIIAEYFYDRFGLSLET------AGAIAASFGLMNLFARPAGGYLSDVAARRFGMRGRLWALWIVQTLGGVFCIWLGR  344 (476)
T ss_pred             HHhHHHHHHHHhcCCCHHH------HHHHHHHHHHHHHHHHhhhHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHHHhcc
Confidence            34455544 5678999888      99999999999999999999999999865       2333333333344445555


Q ss_pred             cchHHHHHHHHHHHhhhccchhh-HHHHHhhhccchhhhHHHHHHHHHHHHHHhHHHHhhhhhcCCCCCCCCcccccccc
Q 015847          132 SVNFWMAVLTRFLLGSLNGLLGP-IKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLF  210 (399)
Q Consensus       132 ~~~~~~l~~~r~l~G~~~~~~~~-~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~i~~~l~~~~~~~~~~~gw~~~f  210 (399)
                      .++.+..++..++.+++.+.... ..+++.+.. +++|+...|+.+.+..+|+.++|.+.+ ..+               
T Consensus       345 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~g~~~g~~~~~g~lg~~i~~~l~~-~~~---------------  407 (476)
T PLN00028        345 ANSLGAAIVVMILFSIFVQAACGATFGIVPFVS-RRSLGVISGLTGAGGNVGAVLTQLLFF-TGS---------------  407 (476)
T ss_pred             cchHHHHHHHHHHHHHHHHHhhhhhcccCcccC-hhhchhhhhhhhccccHHHHHHHHHHH-hcC---------------
Confidence            66665555555566665433333 355666654 478999999987776777777666543 111               


Q ss_pred             cCCcchhhHHHHHHHHHHHHHHHHhcc
Q 015847          211 GKFPYFLPCLCISLFAFGVTIAAFWLP  237 (399)
Q Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (399)
                       ..+|...+.+.+++.++..+..++++
T Consensus       408 -~~~y~~~f~~~~~~~~i~~~~~~~~~  433 (476)
T PLN00028        408 -SYSTETGISLMGVMIIACTLPVAFIH  433 (476)
T ss_pred             -CccHhhHHHHHHHHHHHHHHHHHhee
Confidence             12344445666666666666555554

>TIGR00898 2A0119 cation transport protein

Probab=99.26  E-value=3.3e-11  Score=116.32  Aligned_cols=137  Identities=20%  Similarity=0.119  Sum_probs=103.5

Q ss_pred             HHHHHHHHHhhhhcccccccccCCchhhHHHHHHHHHHHHHHhccchH--HHHHHHHHHHhhhccchhh-HHHHHhhhcc
Q 015847           88 GSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNF--WMAVLTRFLLGSLNGLLGP-IKAYACEIFR  164 (399)
Q Consensus        88 ~~~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~--~~l~~~r~l~G~~~~~~~~-~~~~~~~~~~  164 (399)
                      .....+...++.++.+++.||+|||+.+.++.++.+++.++..+.++.  +...+..++.+++.+...+ .+.+.+|.+|
T Consensus       361 ~~~~~~~~i~~~~~~~~l~dr~grr~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p  440 (505)
T TIGR00898       361 LFISGLVELPAKLITLLLIDRLGRRYTMAASLLLAGVALLLLLFVPVDLYFLRTALAVLGKFGITSAFQMVYLYTAELYP  440 (505)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence            334456667788899999999999999999999888888777766543  4444445555665555445 4889999999


Q ss_pred             chhhhHHHHHHHHHHHHHHhHHHHhhhhhcCCCCCCCCcccccccccCCcchhhHHHHHHHHHHHHHHHHhcccCCCC
Q 015847          165 EEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHR  242 (399)
Q Consensus       165 ~~~r~~~~~~~~~~~~~g~~~~p~i~~~l~~~~~~~~~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~  242 (399)
                      ++.|++++|+.+....+|.+++|.+.+ +.+                 .++..++.+.++..++..+..+++||+..+
T Consensus       441 ~~~r~~~~g~~~~~~~ig~~i~p~i~~-~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~lpet~~~  500 (505)
T TIGR00898       441 TVVRNLGVGVCSTMARVGSIISPFLVY-LGE-----------------KWLFLPLVLFGGLALLAGILTLFLPETKGV  500 (505)
T ss_pred             HHHHhhhHhHHHHHHHHHHHHHhHHHH-HHH-----------------HHHhhHHHHHHHHHHHHHHHHHcCcCCCCC
Confidence            999999999999999999999999998 432                 223445566666666666667788887643

>PRK15075 citrate-proton symporter; Provisional

Probab=99.25  E-value=9.7e-11  Score=110.69  Aligned_cols=137  Identities=19%  Similarity=0.170  Sum_probs=99.0

Q ss_pred             hhccccchhhhHHHHHHH-hccCccccchhhhhhHHHHHHHHHHHhhhhcccccccccCCchhhHHHHHHHHHHHH-HH-
Q 015847           53 TALPISSLFPFLYFMIKD-FQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNT-LF-  129 (399)
Q Consensus        53 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~-~~-  129 (399)
                      ..........+.|.+.++ +|.+..+      .++....+.++..++.++.|+++||+|||+++..+.++.++..+ .. 
T Consensus       250 ~~~~~~~~~~~~p~~l~~~~g~~~~~------~~~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~  323 (434)
T PRK15075        250 TTVSFYLITVYTPTFGKTVLHLSAAD------SLLVTLCVGVSNFIWLPIGGALSDRIGRRPVLIAFTVLAILTAYPALS  323 (434)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHH
Confidence            344445566677876654 7998888      88888888999999999999999999999998876554433221 11 


Q ss_pred             --hccchHHHHHHHHHHHhhhccchhhH-HHHHhhhccchhhhHHHHHH-HHHHHHHHhHHHHhhhhhcC
Q 015847          130 --GLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTV-STAWGIGLIIGPALGGFLAQ  195 (399)
Q Consensus       130 --~~~~~~~~l~~~r~l~G~~~~~~~~~-~~~~~~~~~~~~r~~~~~~~-~~~~~~g~~~~p~i~~~l~~  195 (399)
                        ...++.....+..++.|++.+...+. ..++.|.+|+++|++++++. +.+..+++.++|.+.+++.+
T Consensus       324 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~~~g~~~p~~~g~i~~  393 (434)
T PRK15075        324 WLVAAPSFARMLAVELWLSFLYGSYNGAMVVALTEVMPAEVRTAGFSLAYSLATAIFGGFTPAISTWLIH  393 (434)
T ss_pred             HHHcCCchHHHHHHHHHHHHHHHHHHhhHHHHHHHHCCCCccchheeHHHHHHHHHHhhhHHHHHHHHHH
Confidence              12234444444455566666665553 77889999999999999986 44444567889999999988

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=99.25  E-value=2.5e-11  Score=112.33  Aligned_cols=153  Identities=16%  Similarity=0.143  Sum_probs=105.7

Q ss_pred             HHHHHHHHHhhccccchhhhHHHHH-HHhccCccccchhhhhhHHHHHHHHHHHhhhhcccccccccCC-chhhH-HHH-
Q 015847           44 FSIWIIVLCTALPISSLFPFLYFMI-KDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGR-KPVII-MGT-  119 (399)
Q Consensus        44 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~dr~Gr-r~~l~-~~~-  119 (399)
                      +.+.+..++............|.+. +++|.+..+      .++..+...++..++.++.|+++||.++ |+... ... 
T Consensus       219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~------~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~  292 (379)
T TIGR00881       219 WYISLGYVFVYVVRTGILDWSPLYLTQEKGFSKEK------ASWAFTLYELGGLVGTLLAGWLSDKLFNGRRGPLAVFFM  292 (379)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHH------HHHHHHHHHHHcchhHHHHHHHHHHHcCCcchHHHHHHH
Confidence            3344444444444455566666554 667998888      9999999999999999999999998643 33222 222 


Q ss_pred             HHHHHHHHHHhc--cchHHHHHHHHHHHhhhccchhh-HHHHHhhhccchhhhHHHHHHHHHHHHHHhHHHHhhhhhcCC
Q 015847          120 ASVVIFNTLFGL--SVNFWMAVLTRFLLGSLNGLLGP-IKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQP  196 (399)
Q Consensus       120 ~~~~~~~~~~~~--~~~~~~l~~~r~l~G~~~~~~~~-~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~i~~~l~~~  196 (399)
                      ....++......  ..+.....+..++.|.......+ ...+..|.+|+++|+++.|+.+....+|..++|.+.|.+.+ 
T Consensus       293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~-  371 (379)
T TIGR00881       293 ALIIVSLLVYWLNPAANPLMDLICLFALGFLVYGPQMLIGVIASELAPKKAAGTAAGFVGFFAYLGGILAGLPLGYLAD-  371 (379)
T ss_pred             HHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcCcchhHHHHHHHHHhhhhhhhhhhhhHHHHHH-
Confidence            222222222222  23455555666677765433333 47788999999999999999999999999999999999998 


Q ss_pred             CCCCCCccccccc
Q 015847          197 AEKYPNLFSSESL  209 (399)
Q Consensus       197 ~~~~~~~~gw~~~  209 (399)
                            ..||+..
T Consensus       372 ------~~g~~~~  378 (379)
T TIGR00881       372 ------GFGWAGA  378 (379)
T ss_pred             ------hhccccc
Confidence                  5666543

>TIGR00896 CynX cyanate transporter

Probab=99.25  E-value=1.3e-10  Score=106.77  Aligned_cols=141  Identities=13%  Similarity=0.032  Sum_probs=107.9

Q ss_pred             HHHHhhccccchhhhHHHHHHHhccCccccchhhhhhHHHHHHHHHHHhhhhccccccccc-CCchhhHHHHHHHHHHHH
Q 015847           49 IVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRY-GRKPVIIMGTASVVIFNT  127 (399)
Q Consensus        49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~dr~-Grr~~l~~~~~~~~~~~~  127 (399)
                      ..++..........++|.+.++.|.+..+      .+...+...++..++.++.|+++||+ +||+.+..+.++.+++.+
T Consensus       205 ~~~~~~~~~~~~~~~lp~~~~~~g~~~~~------~g~~~~~~~~~~i~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~  278 (355)
T TIGR00896       205 FFGLQSGLYYSLIGWLPAILISHGASAAT------AGSLLALMQLAQAASALLIPALARRVKDQRGIVAVLAVLQLVGLC  278 (355)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcCCCHHH------HHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHH
Confidence            33333444445566778787888998888      99999999999999999999999999 566777777777777776


Q ss_pred             HHhccchHHHHHHHHHHHhhhccchhhH-HHHHhhhcc-chhhhHHHHHHHHHHHHHHhHHHHhhhhhcCC
Q 015847          128 LFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFR-EEHQALGLSTVSTAWGIGLIIGPALGGFLAQP  196 (399)
Q Consensus       128 ~~~~~~~~~~l~~~r~l~G~~~~~~~~~-~~~~~~~~~-~~~r~~~~~~~~~~~~~g~~~~p~i~~~l~~~  196 (399)
                      .+.+.++..... ..++.|++.+...+. .+.+.+..+ +++++...++.+....+|..++|.+.|++.+.
T Consensus       279 ~~~~~~~~~~~~-~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~gp~~~G~l~~~  348 (355)
T TIGR00896       279 GLLFAPMHGLWA-WALVLGLGQGGAFPLALTLIGLRSRQAAQAAALSAMAQSIGYLLAALGPLFVGVLHDI  348 (355)
T ss_pred             HHHHhhhhHHHH-HHHHHHHhhhhHhHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            666655433222 346788888887774 666665554 56778999998888899999999999999984

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=99.23  E-value=1.9e-11  Score=115.70  Aligned_cols=112  Identities=16%  Similarity=0.220  Sum_probs=95.2

Q ss_pred             hhHHHHHHHHHHHhhhhcccccccccCCchhhHHHHHHHHHHHHHHhcc-chHHHHHHHHHHHhhhccchhhH-HHHHhh
Q 015847           84 AGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLS-VNFWMAVLTRFLLGSLNGLLGPI-KAYACE  161 (399)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~-~~~~~l~~~r~l~G~~~~~~~~~-~~~~~~  161 (399)
                      .+++.+...++..++.+++++++||+|+|+++..+.++.+++.+...+. ++.+.+++..++.|++.+...+. .++++|
T Consensus       259 ~~~~~~~~~i~~ii~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~  338 (437)
T TIGR00792       259 FSYMGSIAIVAGLIGVLLFPRLVKKFGRKILFAGGILLMVLGYLIFFFAGSNLPLILVLIILAGFGQNFVTGLVWALVAD  338 (437)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            6777788899999999999999999999999999988888877766654 45666777778888888776664 888888


Q ss_pred             hcc-------chhhhHHHHHHHHHHHHHHhHHHHhhhhhcC
Q 015847          162 IFR-------EEHQALGLSTVSTAWGIGLIIGPALGGFLAQ  195 (399)
Q Consensus       162 ~~~-------~~~r~~~~~~~~~~~~~g~~~~p~i~~~l~~  195 (399)
                      ..+       ++++|..+|+.+....+|..+++.+.|.+.+
T Consensus       339 ~~~~~~~~~~~~~~G~~~~~~~~~~~~g~~lg~~i~g~ll~  379 (437)
T TIGR00792       339 TVDYGEWKTGVRAEGLVYSVRTFVRKLGQALAGFLVGLILG  379 (437)
T ss_pred             hhhhhhhhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            865       5567999999999999999999999999987

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX)

Probab=99.22  E-value=2.7e-08  Score=90.31  Aligned_cols=275  Identities=13%  Similarity=0.052  Sum_probs=166.6

Q ss_pred             HHHHHH-hccCccccchhhhhhHHHHHHHHHHHhhhhcccccccccCCchhhHHHHHHHHHHHHHHhccchHHHHHHHHH
Q 015847           65 YFMIKD-FQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRF  143 (399)
Q Consensus        65 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~  143 (399)
                      |++.+. .|+++.|-     ..-+.-...-.+.+..++...+.|..|.|++++++.+...+...+.-+.++...+.+..+
T Consensus        28 ~yL~~~~kn~T~~qv-----~~~i~Pv~tYSyl~~l~~vflltd~l~Ykpviil~~~~~i~t~~lll~~~sv~~mq~~q~  102 (412)
T PF01770_consen   28 PYLTGPDKNFTEEQV-----NNEIYPVWTYSYLAFLLPVFLLTDYLRYKPVIILQALSYIITWLLLLFGTSVLAMQLMQF  102 (412)
T ss_pred             HHHcCCccCCCHHHH-----HHhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHCcHHHHHHHHH
Confidence            344443 67777762     223333344455667788889999999999999999999999999999999999999999


Q ss_pred             HHhhhccchhhHHHHHhhhccchhhhHHHHHHHHHHHHHHhHHHHhhhhhcCCCCCCCCcccccccccCCcchhhHHHHH
Q 015847          144 LLGSLNGLLGPIKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCIS  223 (399)
Q Consensus       144 l~G~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~i~~~l~~~~~~~~~~~gw~~~f~~~~~~~~~~~~~  223 (399)
                      .-|++.+.-.+.++++--..|+++--++.+...+..-+|..++.++|-.+...        +      ..++.....+..
T Consensus       103 ~yg~~~a~evay~sYiys~v~~~~yq~vts~~raa~l~g~~~s~~lgQllvs~--------~------~~sy~~L~~isl  168 (412)
T PF01770_consen  103 FYGLATAAEVAYYSYIYSVVDKEHYQKVTSYTRAATLVGRFISSLLGQLLVSF--------G------GVSYFQLNYISL  168 (412)
T ss_pred             HHHHHHHHHHHHHHHheeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--------c------CCCHHHHHHHHH
Confidence            99999888666689998888988888999999999999999999999988751        1      333444445555


Q ss_pred             HHHHHHHHHHHhcccCCCCCCCCCCc---c---chhhhhhhhhhhhh---hhccc-----------cCCcccccccccch
Q 015847          224 LFAFGVTIAAFWLPETLHRHNDDDDS---C---DVSYDALESASAEV---KEEEG-----------REATPKKSLLKNWP  283 (399)
Q Consensus       224 ~~~~~~~~~~~~~~e~~~~~~~~~~~---~---~~~~~~~~~~~~~~---~~~~~-----------~~~~~~~~~~~~~~  283 (399)
                      ....++++..+++|..++..--+++.   .   +...+..++..++.   .+.+.           ...++.++..++|.
T Consensus       169 ~~~~~a~~~~~fLP~~~~S~~f~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~y~~~~  248 (412)
T PF01770_consen  169 ASVSLALLIALFLPMPKRSLFFHRKPPAEQDANESESDKMNESPESSSSTEKSPSTESSSRKSVLRLLWKDFKSCYSNPR  248 (412)
T ss_pred             HHHHHHHHHHHHcCCCCcccceeccCccccccccccccccccccccccccccCcccccchHHHHHHHHHHHHHHHhcCch
Confidence            54555566667788755422111100   0   00000000000000   00000           01123345567777


Q ss_pred             hHHHHHHHHHHHhhhhhHHHHHHHhhcCCcccCccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHH
Q 015847          284 LMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGV  362 (399)
Q Consensus       284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  362 (399)
                      ++.-.+-+.+.........++......+. ..  -+-.....|.+-+...+.+.++. +..+++..+..+..-+.++..
T Consensus       249 ll~WSlWWa~atcgy~qv~nYvQ~LW~~v-~~--~~~~~vYNG~VeA~~tllgA~~a-l~~g~v~~~w~~~~~l~l~~~  323 (412)
T PF01770_consen  249 LLLWSLWWAFATCGYYQVINYVQSLWDTV-PP--SDNESVYNGAVEAASTLLGAIAA-LLAGYVKVNWDRWGELALGVF  323 (412)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHhc-CC--CCCCcccchHHHHHHHHHHHHHH-HHHhHhhcchHHHHHHHHHHH
Confidence            76655544444444444433333322222 00  12234445666666666666666 366777655665444444433

Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=99.22  E-value=2.6e-10  Score=107.75  Aligned_cols=135  Identities=12%  Similarity=0.064  Sum_probs=89.0

Q ss_pred             hccccchhhhHHHHH-HHhccCccccchhhhhhHHHHHHHHHHHhhhhcccccccccCCchhhHHHHHHHHHHHHHHh--
Q 015847           54 ALPISSLFPFLYFMI-KDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFG--  130 (399)
Q Consensus        54 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~--  130 (399)
                      .........++|.+. +++|.+..+      .+...++..++..+++++.|+++||+|||+++.++.++.++..+...  
T Consensus       256 ~~~~~~~~~~lp~~l~~~~g~s~~~------~~~~~~i~~~~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~  329 (432)
T PRK10406        256 SLCFYTFTTYMQKYLVNTAGMHANV------ASGIMTAALFVFMLIQPLIGALSDKIGRRTSMLCFGSLAALFTVPILSA  329 (432)
T ss_pred             HHHHHHHHHHHHHHHHHhcCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHH
Confidence            333444566777654 567888877      88888888888889999999999999999988776654433332111  


Q ss_pred             --ccchHHHHHHHHHHHhhhccchhh-HHHHHhhhccchhhhHHHHHHHHHHH-HHHhHHHHhhhhhc
Q 015847          131 --LSVNFWMAVLTRFLLGSLNGLLGP-IKAYACEIFREEHQALGLSTVSTAWG-IGLIIGPALGGFLA  194 (399)
Q Consensus       131 --~~~~~~~l~~~r~l~G~~~~~~~~-~~~~~~~~~~~~~r~~~~~~~~~~~~-~g~~~~p~i~~~l~  194 (399)
                        ..++....+..-.+.+...+...+ ...+.+|.+|++.|++++|+.+...+ +.+...|.+.+.+.
T Consensus       330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~fp~~~r~t~~g~~~~~g~~~~g~~~p~~~~~l~  397 (432)
T PRK10406        330 LQNVSSPYAAFGLVMCALLIVSFYTSISGILKAEMFPAQVRALGVGLSYAVANALFGGSAEYVALSLK  397 (432)
T ss_pred             HHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCccchhhhHHHHHHHHHHHhHHHHHHHHHH
Confidence              122333222222222233333333 47889999999999999999866544 43555888888664

>KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism]

Probab=99.22  E-value=1e-09  Score=98.69  Aligned_cols=147  Identities=21%  Similarity=0.318  Sum_probs=110.3

Q ss_pred             hHHHHHHHHHHHhhccccchhhhHHHHHHHhccCccccchhhhhhHHHHHHHHHHHhhhhccccccc----ccCCchhhH
Q 015847           41 TELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVAD----RYGRKPVII  116 (399)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~d----r~Grr~~l~  116 (399)
                      +.++.+....+..-++...-..+.+++.++.|++...      .+.+-.+..+...+.+|+.|..+|    ||||||.++
T Consensus        32 ~~li~v~~ia~Gvqf~wA~elsy~tPyl~~lGvphk~------~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRRPfI  105 (498)
T KOG0637|consen   32 RKLISVASIAAGVQFGWALELSYLTPYLQSLGVPHKW------SSIIWLCGPLSGLLVQPLVGSASDRCTSRYGRRRPFI  105 (498)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccccHHHHHcCCCccc------ccccccccccccceecccccccccccccccccccchH
Confidence            5555666666666666677777888889999999887      777777788888899999999999    489988776


Q ss_pred             HH-HHHHHHHHHHHhccchH-----------------HHHHHHHHHHhhhc-cchhhHHHHHhhhccchhhhH-HHHHHH
Q 015847          117 MG-TASVVIFNTLFGLSVNF-----------------WMAVLTRFLLGSLN-GLLGPIKAYACEIFREEHQAL-GLSTVS  176 (399)
Q Consensus       117 ~~-~~~~~~~~~~~~~~~~~-----------------~~l~~~r~l~G~~~-~~~~~~~~~~~~~~~~~~r~~-~~~~~~  176 (399)
                      .. .+...++.++..++.++                 ..+++...+.-++. -...|+.+++.|...++++.+ +++.+.
T Consensus       106 ~~~s~~i~~~l~Lig~aaDig~~lgd~~~~~~~~rai~~~~lg~~LLD~A~n~~qgp~ra~L~Dl~~~d~~~~~Ans~f~  185 (498)
T KOG0637|consen  106 LAGSLLIAVSLFLIGYAADIGLLLGDNERKPVKPRAIVLFILGFWLLDVANNTLQGPCRALLADLARGDAKKTRANSVFS  185 (498)
T ss_pred             HHhhHHHHHHHhhhhhHhhhhHHhcCCcccccchHHHHHHHHHhHHHHhhhhhhhhhHHHHHHHhccChhhhhccchhHH
Confidence            65 45555666666665432                 23344445555554 446678999999998777777 999999


Q ss_pred             HHHHHHHhHHHHhhhhh
Q 015847          177 TAWGIGLIIGPALGGFL  193 (399)
Q Consensus       177 ~~~~~g~~~~p~i~~~l  193 (399)
                      .+.++|+.+|...++++
T Consensus       186 ~f~avGnvLGY~~g~y~  202 (498)
T KOG0637|consen  186 FFMAVGNVLGYALGSYL  202 (498)
T ss_pred             HHHHhcceeeeeccccc
Confidence            99999999998888643

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=99.22  E-value=1.5e-10  Score=108.53  Aligned_cols=128  Identities=13%  Similarity=0.013  Sum_probs=101.2

Q ss_pred             hhhHHHH-HHHhccCccccchhhhhhHHHHHHHHHHHhhhhcccccccccCCchhhHHHHHHHHHHHHHHhcc-----ch
Q 015847           61 FPFLYFM-IKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLS-----VN  134 (399)
Q Consensus        61 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~-----~~  134 (399)
                      ....|.+ .+++|.++.+      .++......++..++.++.|+++||+|+|+.+.++.++.+++.++..+.     ++
T Consensus       235 ~~~~p~~~~~~~g~~~~~------~g~~~~~~~~~~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~  308 (406)
T PRK15402        235 IALSPVILISGEQLSSYE------YGLLQVPVFGALIAGNLTLARLTSRRPLRSLIRMGLWPMVAGLLLAALATVISSHA  308 (406)
T ss_pred             HHHhHHHHHHHhCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHccccc
Confidence            3345544 4668888887      8888888888889999999999999999999998888777776665542     35


Q ss_pred             HHHHHHHHHHHhhhccchhhH-HHHHhhhccchhhhHHHHHHHHHHHHHHhHHHHhhhhhcC
Q 015847          135 FWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQ  195 (399)
Q Consensus       135 ~~~l~~~r~l~G~~~~~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~i~~~l~~  195 (399)
                      .+.+++..++.|++.+...+. ..... ..++++||+..+..+....+|..+|+.+++.+.+
T Consensus       309 ~~~~~~~~~~~g~g~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~l~~  369 (406)
T PRK15402        309 YLWLTAGLSLYAFGIGLANAGLYRLTL-FSSDVSKGTVSAAMGMLSMLIFTVGIELSKHAYL  369 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhHHHHHh-hhccccccHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            666777788889887776554 44443 3345899999999999999999999999999987

>PF03825 Nuc_H_symport: Nucleoside H+ symporter

Probab=99.21  E-value=1.9e-10  Score=106.39  Aligned_cols=182  Identities=16%  Similarity=0.275  Sum_probs=135.1

Q ss_pred             HHHHHHHHHHHhhccccchhhhHHHHHHHhc-cCccccchhhhhhHHHHHHHHHHHhhhhcccccccccCCchhhHHHHH
Q 015847           42 ELFSIWIIVLCTALPISSLFPFLYFMIKDFQ-IAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTA  120 (399)
Q Consensus        42 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~  120 (399)
                      ++....+..++..........+.+.+.++.| .+...      .+.+.+...++-++.-...+++..|+|.|+++.++.+
T Consensus       208 ~~~~Fll~~~l~~~~~~~~~~f~~~yl~~~gg~~~~~------~g~~~~l~~~aEi~~f~~~~~~~~r~g~~~ll~~a~~  281 (400)
T PF03825_consen  208 RFLVFLLAAFLIGISHAAYYTFFSIYLQELGGYSGST------IGILWALGVVAEIPFFFFSGRFLKRFGIKWLLLLALV  281 (400)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchhhH------HHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence            3444445556666667777788887888888 66666      7888888888899999999999999999999999999


Q ss_pred             HHHHHHHHHhcc-chHHHHHHH----HHHHhhhccchhhH-HHHHhhhccchhhhHHHHHHHH-HHHHHHhHHHHhhhhh
Q 015847          121 SVVIFNTLFGLS-VNFWMAVLT----RFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVST-AWGIGLIIGPALGGFL  193 (399)
Q Consensus       121 ~~~~~~~~~~~~-~~~~~l~~~----r~l~G~~~~~~~~~-~~~~~~~~~~~~r~~~~~~~~~-~~~~g~~~~p~i~~~l  193 (399)
                      .+++=..+++.. ++.+...+.    ..+.|+..+...++ ..++.+..|++.|+++.++++. ..++|..+|..++|++
T Consensus       282 ~~~vR~~l~a~~~~~~~~~~~~~~l~q~lhG~tf~~~~~a~~~yi~~~~p~~~~at~Q~l~~~~~~Glg~~iG~~igG~l  361 (400)
T PF03825_consen  282 AYAVRWLLYAYFSDPWPFIVALQLLGQLLHGLTFGLFHAASVRYIDRIAPPELRATAQGLYSALSFGLGGAIGSLIGGWL  361 (400)
T ss_pred             HHHHHHHHHHHhcCCcHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence            999988888877 554443333    45689988887775 9999999999999999999855 6789999999999999


Q ss_pred             cCCCCCCCCcccccccccCCcchhhHHHHHHHHHHHHH-HHHhcccC
Q 015847          194 AQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTI-AAFWLPET  239 (399)
Q Consensus       194 ~~~~~~~~~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~-~~~~~~e~  239 (399)
                      .+       .+|-+..| +  |...+.+.+++.++..+ .+++.||+
T Consensus       362 ~~-------~~g~~~~~-~--~~~~~~v~a~~~~~~~~~f~~~fk~~  398 (400)
T PF03825_consen  362 YD-------AFGARGMF-D--WSAVFLVFAVMALVILVLFVILFKPK  398 (400)
T ss_pred             HH-------Hhcchhhh-h--HHHHHHHHHHHHHHHHHHHHhhccCC
Confidence            98       45544433 1  33333445554444333 33444443

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=99.21  E-value=1.5e-10  Score=109.52  Aligned_cols=174  Identities=11%  Similarity=0.032  Sum_probs=106.9

Q ss_pred             HHHHHHHHhhccccchhhhHHHHHH-HhccCccccchhhhhhHHHHHHHHHHHhhhhcccccccccCCchhhHHHHHHHH
Q 015847           45 SIWIIVLCTALPISSLFPFLYFMIK-DFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVV  123 (399)
Q Consensus        45 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~  123 (399)
                      ......++............|.+.+ ..|.+..+      .++....+.++..++.++.|+++||+++++....+.....
T Consensus       255 ~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~------~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~~~~  328 (438)
T TIGR00712       255 YIAIANVFVYLLRYGVLDWSPTYLKEVKHFALDK------SSWAYFLYEYAGIPGTLLCGWMSDKVFKGNRGATGVFFMT  328 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHHccCCChhh------HHHHHHHHHHHHHHHHHHHHHHHHHhccCcccHHHHHHHH
Confidence            3333334444444455567776665 46888888      8999999999999999999999999975432223332221


Q ss_pred             ---HHHHHHhc--cchHHHHHHHHHHHhhhccchhh-HHHHHhhhccchhhhHHHHHHHHHHHHH-HhHHHHhhhhhcCC
Q 015847          124 ---IFNTLFGL--SVNFWMAVLTRFLLGSLNGLLGP-IKAYACEIFREEHQALGLSTVSTAWGIG-LIIGPALGGFLAQP  196 (399)
Q Consensus       124 ---~~~~~~~~--~~~~~~l~~~r~l~G~~~~~~~~-~~~~~~~~~~~~~r~~~~~~~~~~~~~g-~~~~p~i~~~l~~~  196 (399)
                         ++.+....  ..+.+...+..++.|++...... ......|.+|+++|+++.|+.+....+| ..++|.+.|.+.+ 
T Consensus       329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~gg~~~gp~l~G~l~~-  407 (438)
T TIGR00712       329 LVTIAVIVYWMNPAGNPLVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVD-  407 (438)
T ss_pred             HHHHHHHHHHhcCCCchHHHHHHHHHHHHHHccHHHHHHHHHHHhcChhheeeehhhhchHHHhhhhhhcchhHHHHHH-
Confidence               22222222  22344333444445543222222 2456789999999999999998877776 5789999999998 


Q ss_pred             CCCCCCcccccccccCCcchhhHHHHHHHHHHH-HHHHHhcccCC
Q 015847          197 AEKYPNLFSSESLFGKFPYFLPCLCISLFAFGV-TIAAFWLPETL  240 (399)
Q Consensus       197 ~~~~~~~~gw~~~f~~~~~~~~~~~~~~~~~~~-~~~~~~~~e~~  240 (399)
                            ..||+.         .+.+.++..++. +.....+||.+
T Consensus       408 ------~~g~~~---------~~~~~~~~~~~~~~~~~~~~~~~~  437 (438)
T TIGR00712       408 ------FFGWDG---------GFMVMIGGSILAVILLIVVMIGEK  437 (438)
T ss_pred             ------hccchH---------HHHHHHHHHHHHHHHHHHHHhhcc
Confidence                  344433         335544444443 34455566643

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>PRK10054 putative transporter; Provisional

Probab=99.21  E-value=1e-10  Score=109.05  Aligned_cols=111  Identities=16%  Similarity=0.033  Sum_probs=94.3

Q ss_pred             hhHHHHHHHHHHHhhhhcccccccccCCchhhHHHHHHHHHHHHHHhcc-chHHHHHHHHHHHhhhccchhhH-HHHHhh
Q 015847           84 AGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLS-VNFWMAVLTRFLLGSLNGLLGPI-KAYACE  161 (399)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~-~~~~~l~~~r~l~G~~~~~~~~~-~~~~~~  161 (399)
                      .+++.+...+.....+++.|++.||+++|+.+..+..+..++.....+. ++.+.+++..++.|++.+...|. .+.+.+
T Consensus       246 ~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~p~~~~~~~~  325 (395)
T PRK10054        246 VAVVLPVNAAMVVSLQYSVGRRLNAANIRPLMTAGTLCFVIGLVGFIFSGNSLLLWGMSAAVFTVGEIIYAPGEYMLIDH  325 (395)
T ss_pred             HHHHHHhhhhheeeehhHHHHHHccCCchhHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence            7788888888777888899999999999999999988888887777654 56777777888999988877775 889999


Q ss_pred             hccchhhhHHHHHHHHHHHHHHhHHHHhhhhhcC
Q 015847          162 IFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQ  195 (399)
Q Consensus       162 ~~~~~~r~~~~~~~~~~~~~g~~~~p~i~~~l~~  195 (399)
                      ..|++.|++.++..+ ...+|..+||.++|.+.+
T Consensus       326 ~~p~~~~~~~~~~~~-~~~~G~~~Gp~~~G~l~~  358 (395)
T PRK10054        326 IAPPGMKASYFSAQS-LGWLGAAINPLVSGVILT  358 (395)
T ss_pred             hCCcccceehHhHHH-HHHHHHHHHHHHHHHHHH
Confidence            999999999988665 556899999999999998

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=99.20  E-value=4.6e-10  Score=104.60  Aligned_cols=125  Identities=11%  Similarity=0.004  Sum_probs=98.5

Q ss_pred             HHHHHHHhccCccccchhhhhhHHHHHHHHHHHhhhhcccccccccCCchhhHHHHHHHHHHHHHHhccchHHHHHHHHH
Q 015847           64 LYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRF  143 (399)
Q Consensus        64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~  143 (399)
                      .|.+.+++|.+..+      .+.....+.++..++.++.|++.||.+++..+....+......++....++.+.+.+..+
T Consensus       240 ~p~~~~~~g~s~~~------~g~~~~~~~~~~iig~~~~~~l~~r~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  313 (394)
T PRK10213        240 RPVYMNLAGFGVDG------LTLVLLSFGIASFVGTSLSSFILKRSVKLALAGAPLVLAVSALVLTLWGSDKIVATGVAI  313 (394)
T ss_pred             HHHHHHhcCCChhH------HHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence            36777888999988      999999999999999999999999965443334333334444455555667778888889


Q ss_pred             HHhhhccchhhH-HHHHhhhccchhhhHHHHHHHHHHHHHHhHHHHhhhhhcC
Q 015847          144 LLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQ  195 (399)
Q Consensus       144 l~G~~~~~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~i~~~l~~  195 (399)
                      +.|++.+...+. .+++.+..| +++++..+.......+|..+||.++|.+.+
T Consensus       314 l~G~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~lg~~~G~~l~G~l~~  365 (394)
T PRK10213        314 IWGLTFALVPVGWSTWITRSLA-DQAEKAGSIQVAVIQLANTCGAAIGGYALD  365 (394)
T ss_pred             HHHHHHHhhhHHHHHHHHHHCc-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            999988887775 778888887 556677788888889999999999999998

>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=99.18  E-value=5.6e-10  Score=94.08  Aligned_cols=125  Identities=20%  Similarity=0.273  Sum_probs=100.1

Q ss_pred             HHHHHhccCccccchhhhhhHHHHHHHHHHHhhhhcccccccccCCchhhHHHHHHH-HHHHHHHhccchHHHHHHHHHH
Q 015847           66 FMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASV-VIFNTLFGLSVNFWMAVLTRFL  144 (399)
Q Consensus        66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~-~~~~~~~~~~~~~~~l~~~r~l  144 (399)
                      .+++++|+|+.+      .+-+.+......++.+++.|.++||+|++...+.+..+. .++-....++  .+.=++...+
T Consensus       290 fF~~rfGlS~~~------a~~i~s~vy~Isav~spvfg~i~Dk~G~n~~wv~~a~~~tl~~H~~l~Ft--~lsPy~~m~~  361 (459)
T KOG4686|consen  290 FFQKRFGLSAVS------AGNILSTVYGISAVLSPVFGAISDKYGFNLWWVASACILTLLGHSGLFFT--FLSPYTSMTF  361 (459)
T ss_pred             HHHHhhCCChhh------ccchhhhhhhhhhhhhhhHHHhHhhhcceehhHHHHHHHHHHHhhhHHhh--hccHHHHHHH
Confidence            567899999998      888998888888999999999999999998777665443 3443443332  2223345567


Q ss_pred             HhhhccchhhH-HHHHhhhccchhhhHHHHHHHHHHHHHHhHHHHhhhhhcCCCC
Q 015847          145 LGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAE  198 (399)
Q Consensus       145 ~G~~~~~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~i~~~l~~~~~  198 (399)
                      .|......... +..++...|+++.|++.|..+...++|-++-|+++|++.+..+
T Consensus       362 lGLsysllAcslWP~va~~vpE~qLGTaygf~qsIqNLgla~i~Iiag~i~d~~g  416 (459)
T KOG4686|consen  362 LGLSYSLLACSLWPCVASLVPEEQLGTAYGFIQSIQNLGLAFIPIIAGFIADGDG  416 (459)
T ss_pred             HhhhHHHHHHHHhhhhhhhCCHHHhcchHHHHHHHHhhhhhHHhhhhheeecCCC
Confidence            78877766664 8888999999999999999999999999999999999999554

>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]

Probab=99.18  E-value=4.4e-11  Score=104.29  Aligned_cols=129  Identities=20%  Similarity=0.267  Sum_probs=96.0

Q ss_pred             HHHHHHhhhhcccccccccCCchhhHHHHHHHHHHHHHHhccchHHHHHHHHHHHhhh-ccchhhHHHHHhhhccchhhh
Q 015847           91 FMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSL-NGLLGPIKAYACEIFREEHQA  169 (399)
Q Consensus        91 ~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~-~~~~~~~~~~~~~~~~~~~r~  169 (399)
                      ..+....|.++.+++.||+|||+.+..+.+++++..++...+.+-....+.-+..-+. .+.+.+++.|..|++|.+.|+
T Consensus       390 tslaefPGlLIt~~iverlGRKkTMal~l~~f~iflfll~~c~~rn~~tvllf~arafisg~fqvaYvYtPEVyPTavRa  469 (528)
T KOG0253|consen  390 TSLAEFPGLLITGVIVERLGRKKTMALSLILFGIFLFLLTTCKTRNAYTVLLFTARAFISGAFQVAYVYTPEVYPTAVRA  469 (528)
T ss_pred             HHHhhCCchhHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHhchheEEEEecCcccchhhhh
Confidence            3556678899999999999999999999999999988877765433222222222222 455666799999999999999


Q ss_pred             HHHHHHHHHHHHHHhHHHHhhhhhcCCCCCCCCcccccccccCCcchhhHHHHHHHHHHHHHHHHhcc
Q 015847          170 LGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLP  237 (399)
Q Consensus       170 ~~~~~~~~~~~~g~~~~p~i~~~l~~~~~~~~~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (399)
                      ++.|.-..+..+|+++.|+++ ...+                 -.-..+..+...+++++.++..++|
T Consensus       470 tgvGtcSsmaRIggI~~p~iA-~~~e-----------------~s~sl~i~vy~~~~ilagIavcffP  519 (528)
T KOG0253|consen  470 TGVGTCSSMARIGGIFSPVIA-MRAE-----------------LSTSLPIFVYGALFILAGIAVCFFP  519 (528)
T ss_pred             cchhhhhhHHhhhhhhhhHHH-HHhc-----------------cceeehHHHHHHHHHHHHHHheeee
Confidence            999999999999999999999 3332                 2223444566666666667767776

>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]

Probab=99.17  E-value=2.2e-10  Score=108.75  Aligned_cols=175  Identities=15%  Similarity=0.226  Sum_probs=146.6

Q ss_pred             HHHHHHHHHHHhhccccchhhhHHHHHHHhccCccccchhhhhhHHHHHHHHHHHhhhhcccccccccC--CchhhHHHH
Q 015847           42 ELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYG--RKPVIIMGT  119 (399)
Q Consensus        42 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~dr~G--rr~~l~~~~  119 (399)
                      .++...+...+..++.......+|.+.++.+.++.+      .+.+.++..+...++.++.|+++|+..  ++.+..++.
T Consensus       299 ~fl~~~~~~~~~~~g~~~p~~~l~~~~~~~g~~~~~------aa~l~Siigi~~i~gRi~~G~laD~~~~~~~~~~~~~l  372 (509)
T KOG2504|consen  299 KFLLLALSNLFAYLGFNVPFVYLPSYAKSLGLSSND------AAFLLSIIGVSDIIGRIILGLLADKPGIRALVLFLLTL  372 (509)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhh------hHHHHHHHHHhhhhhhhhhhhhcCccccchHHHHHHHH
Confidence            344555666667777777788889999999999999      999999999999999999999999988  456677788


Q ss_pred             HHHHHHHHHHhccchHHHHHHHHHHHhhhccchhhH-HHHHhhhccchhhhHHHHHHHHHHHHHHhHHHHhhhhhcCCCC
Q 015847          120 ASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAE  198 (399)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~i~~~l~~~~~  198 (399)
                      +..+++.+.++++++++.++..-++.|++.|..... ...+.|..+.++-..+.|+.....+++..+||+++|.+.+.++
T Consensus       373 l~~gl~~~~~p~~~~~~~l~~~~~~fG~~~g~~~~l~~~i~~~~~g~~~l~~a~Gl~l~~~gi~~l~gpPiag~~~d~tg  452 (509)
T KOG2504|consen  373 LIAGLARLFLPFATTYVGLIVFSILFGFCVGSFSSLTPVILVDLVGLEKLSNAYGLLLLFQGIGALVGPPIAGLLYDITG  452 (509)
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhhcchHHHHHHHHhHHHHHcCcccceeeeeccC
Confidence            888888889999999999999999999999998886 5689999999999999999999999999999999999988433


Q ss_pred             CCCCcccccccccCCcchhhHHHHHHHHHHHHHHHHhcc
Q 015847          199 KYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLP  237 (399)
Q Consensus       199 ~~~~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (399)
                      +               |...+..+++..++....++..|
T Consensus       453 ~---------------Y~~~f~~~g~~~~~s~~~~~~~~  476 (509)
T KOG2504|consen  453 N---------------YDHAFYFCGLCFLLSAVLLLILR  476 (509)
T ss_pred             C---------------eeeehhhcChHHHHHHHHHHHhH
Confidence            2               33344666666666666666555

>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins

Probab=99.17  E-value=1.1e-09  Score=93.34  Aligned_cols=132  Identities=14%  Similarity=0.195  Sum_probs=108.6

Q ss_pred             cccchhhhHHHHHHHhccCccccchhhhhhHHHHHHHHHHHhhhhcccccccccCCchhhHHHHHHHHHHHHHHhcc---
Q 015847           56 PISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLS---  132 (399)
Q Consensus        56 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~---  132 (399)
                      ..+.+..+.|.+.+++|+|.+|      ...+.++-.+|..+ .++.|.+.|++|+|.++.+|.+...++..+...+   
T Consensus        17 t~Y~Fs~yS~~Lk~~l~~sq~~------l~~l~~~~~~G~~~-G~~~G~l~d~~gp~~~l~iG~~~~~~GY~~~~l~~~~   89 (250)
T PF06813_consen   17 TTYTFSAYSPQLKSRLGYSQSQ------LNTLSTAGDIGSYF-GILAGLLYDRFGPWVVLLIGAVLGFVGYGLLWLAVSG   89 (250)
T ss_pred             cccchhhhhHHHHHHhCCCHHH------HHHHHHHHHHHhhc-cHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            4566778889999999999999      99999999999876 5889999999999999999999999998777652   


Q ss_pred             ----chHHHHHHHHHHHhhhccchhh-HHHHHhhhccchhhhHHHHHHHHHHHHHHhHHHHhhhhhcC
Q 015847          133 ----VNFWMAVLTRFLLGSLNGLLGP-IKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQ  195 (399)
Q Consensus       133 ----~~~~~l~~~r~l~G~~~~~~~~-~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~i~~~l~~  195 (399)
                          .++|.+.+..++.|.+.+.... +.....+.|| ++||++.|+.-...++++.+-..+...+.+
T Consensus        90 ~i~~~~~~~~~~~~~l~~~s~~~~~ta~lvt~~~NFP-~~RG~vvgilk~~~GLSaai~t~i~~~~f~  156 (250)
T PF06813_consen   90 RIPSLPVWLMCLFLFLGGNSSCWFNTASLVTCVRNFP-RSRGTVVGILKGFFGLSAAIFTQIYSAFFG  156 (250)
T ss_pred             ccCccchHHHHHHHHHHcccHHHhhhHHHHHHHHhCc-cccCceehhhhHHHHhHHHHHHHHHHHHcC
Confidence                4677777777777777666555 4566668887 589999999999999998887777666654

>PRK10091 MFS transport protein AraJ; Provisional

Probab=99.17  E-value=6.8e-10  Score=103.14  Aligned_cols=123  Identities=13%  Similarity=0.110  Sum_probs=91.6

Q ss_pred             HHHHHHhccCccccchhhhhhHHHHHHHHHHHhhhhcccccccccCCchhhHHHHHHHHHHHHHHhc-cchHHHHHHHHH
Q 015847           65 YFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGL-SVNFWMAVLTRF  143 (399)
Q Consensus        65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~-~~~~~~l~~~r~  143 (399)
                      |.+.+.+|.++.+      .++..+...++..++.++.|++.||+|+|+.+..+..+.+++.++... .++.+...+..+
T Consensus       224 ~~~~~~~g~s~~~------~~~~~~~~~~~~~ig~~~~g~l~~r~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~  297 (382)
T PRK10091        224 PYMMFISGFSETS------MTFIMMLVGLGMVLGNLLSGRLSGRYSPLRIAAVTDFIIVLALLMLFFFGGMKTASLIFAF  297 (382)
T ss_pred             HHHHHhcCCCHHH------HHHHHHHHHHHHHHHhHHHheeccccCchhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence            4555668999888      999999999999999999999999999999999888887777655543 455555555666


Q ss_pred             HHhhhccc-hhhHH-HHHhhhccchhhhHHHHHHHHHHHHHHhHHHHhhhhhcC
Q 015847          144 LLGSLNGL-LGPIK-AYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQ  195 (399)
Q Consensus       144 l~G~~~~~-~~~~~-~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~i~~~l~~  195 (399)
                      +.+.+... ..+.. ....+..+++.++.+.  .+....+|..+||.++|++.+
T Consensus       298 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~g~~~Gp~~~G~l~~  349 (382)
T PRK10091        298 ICCAGLFALSAPLQILLLQNAKGGELLGAAG--GQIAFNLGSAIGAYCGGMMLT  349 (382)
T ss_pred             HHHHHHHhhhHHHHHHHHHhCCcchHHHHHH--HHHHHHHHHHHHHHHhHHHHH
Confidence            66665433 33343 3444555555565543  366788999999999999987

>TIGR01272 gluP glucose/galactose transporter

Probab=99.16  E-value=6e-10  Score=99.97  Aligned_cols=146  Identities=16%  Similarity=0.112  Sum_probs=109.2

Q ss_pred             hHHHHHHHHHHHhhccccchhhhHHHHHHH---hccCccccchhhhhhHHHHHHHHHHHhhhhcccccccccCCchhhHH
Q 015847           41 TELFSIWIIVLCTALPISSLFPFLYFMIKD---FQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIM  117 (399)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~dr~Grr~~l~~  117 (399)
                      +.+....+..++..........+.+.+.++   +|.++.+      .+...+.+..+..++.++.+++.||+|+||.+.+
T Consensus       140 ~~~~l~~~~~f~yvg~e~~~~~w~~~yl~~~~~~g~s~~~------a~~~~s~~~~~~~iGr~~~~~l~~r~g~~~~l~~  213 (310)
T TIGR01272       140 THLVLGALGIFVYVGAEVSAGSFLVNFLSDPHALGLPEDQ------AAHFTAYTWGGAMVGRFIGSAVMPMISQGRYLAF  213 (310)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHH
Confidence            334444444554444556666777766643   5888888      9999999999999999999999999999999988


Q ss_pred             HHHHHHHHHHHHhccchHHHHHHHHHHHhhhccchhhH-HHHHhhhccchhhhHHHHHHHHHHHHHHhHHHHhhhhhcC
Q 015847          118 GTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQ  195 (399)
Q Consensus       118 ~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~i~~~l~~  195 (399)
                      +..+.+++.++....++...+ ..-++.|++.+...|. .+...+..|++ .+++.++. .+..+|+.++|.+.|.+.|
T Consensus       214 ~~~l~~~~~~l~~~~~~~~~~-~~~~l~g~~~s~i~P~~~s~a~~~~~~~-~~~asai~-~~~~~Gg~i~P~l~G~lad  289 (310)
T TIGR01272       214 NAFLAVLLSIGAALTHGYVAM-WFVLALGLFNSIMFPTIFSLALNALGRH-TSQGSGIL-CLAIVGGAIVPLLQGSLAD  289 (310)
T ss_pred             HHHHHHHHHHHHHHcCCHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhhhh-hhhhHHHH-HHHHhcchHHHHHHHHHHH
Confidence            888887777666555544333 3455788888887775 88888887753 44556665 5667999999999999998

Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=99.14  E-value=6.4e-10  Score=106.19  Aligned_cols=177  Identities=16%  Similarity=0.186  Sum_probs=112.3

Q ss_pred             hHHHHHHHHHHHhhccccchhhhHHHHH-HHhccCccccchhhhhhHHHHHHHHHHHhhhhcccccccccCCchhh----
Q 015847           41 TELFSIWIIVLCTALPISSLFPFLYFMI-KDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVI----  115 (399)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~dr~Grr~~l----  115 (399)
                      +.++...+..+...........++|.+. +++|.+..+      .++..++..++..++.++.|+++||+++|+..    
T Consensus       261 ~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~------~g~~~~~~~~~~~i~~~~~g~l~d~~~~~~~~~~~~  334 (465)
T TIGR00894       261 LPVWAIWFAIFGHFWLYTILPTYLPTFISWVLRVSGKE------NGLLSSLPYLFAWLCSIFAGYLADFLKSSKTLSLTA  334 (465)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHH------hHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHH
Confidence            3445555666666666666677788554 668999988      99999999999999999999999998754321    


Q ss_pred             ----HHHHHHH--HHHHHHHhc-cchHHHHHHHHHHHhhhccchhhH-HHHHhhhccchhhhHHHHHHHHHHHHHHhHHH
Q 015847          116 ----IMGTASV--VIFNTLFGL-SVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGP  187 (399)
Q Consensus       116 ----~~~~~~~--~~~~~~~~~-~~~~~~l~~~r~l~G~~~~~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p  187 (399)
                          ..+....  ++..+.... ..+....++.-.+.+.+.+...+. .....|..| +.+|...++.+....+|+.++|
T Consensus       335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~l~~~i~p  413 (465)
T TIGR00894       335 ARKIFNGIGGLGPGIFAYALPYLSAAFYLTIIILTLANAVSSGPLAGVLINSLDLAP-RFLGFIKGITGLPGFIGGLIAS  413 (465)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHhhhhhhhhhhchhhcCh-hHHHHHHHHHHHHHHHHHHHHH
Confidence                1111111  111111122 234444444444444444443343 445556665 5899999999999999999999


Q ss_pred             HhhhhhcCCCCCCCCcccccccccCCcchhhHHHHHHHHHHHHHHHHhcc
Q 015847          188 ALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLP  237 (399)
Q Consensus       188 ~i~~~l~~~~~~~~~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (399)
                      .+.+.+.+..       +      ...|...+.+.++..++..+.....+
T Consensus       414 ~l~g~~~~~~-------~------~~~~~~~f~~~~~~~~i~~i~~~~~~  450 (465)
T TIGR00894       414 TLAGNILSQD-------S------KNVWLIVFLIMAFVNILCVIFYLIFG  450 (465)
T ss_pred             HhhheeeCCC-------C------chHHHHHHHHHHHHHHHHHHHeeeee
Confidence            9999888621       1      11245555776666666555544443

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=99.14  E-value=3.2e-10  Score=105.89  Aligned_cols=130  Identities=12%  Similarity=0.053  Sum_probs=104.3

Q ss_pred             hhhHHHHHHHhccCccccchhhhhhHHHHHHHHHHHhhhhccccccc-ccCCchhhHHHHHHHHHHHHHHhccchHHHHH
Q 015847           61 FPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVAD-RYGRKPVIIMGTASVVIFNTLFGLSVNFWMAV  139 (399)
Q Consensus        61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~d-r~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~  139 (399)
                      ....|.+.++.+.++.+      .+++.+...++...+..+.+++.| |++.|+.+..+.++.+++.++.++.++.+.+.
T Consensus       228 ~~~~p~~~~~~~~~~~~------~g~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  301 (400)
T PRK11646        228 MLMLPIMVNDIAGSPSA------VKWMYAIEACLSLTLLYPIARWSEKRFRLEHRLMAGLLIMSLSMFPIGMVSNLQQLF  301 (400)
T ss_pred             HHhhhhhHHhhcCCchH------HHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence            34567766666556666      888888877776666666666665 46667777788888888887887888888777


Q ss_pred             HHHHHHhhhccchhhH-HHHHhhhccchhhhHHHHHHHHHHHHHHhHHHHhhhhhcCC
Q 015847          140 LTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQP  196 (399)
Q Consensus       140 ~~r~l~G~~~~~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~i~~~l~~~  196 (399)
                      +...+.+++.+...|. .+++.|..|+++||+++|+.+....+|..+||.++|++.+.
T Consensus       302 ~~~~l~~~g~~~~~p~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~ig~~l~G~l~~~  359 (400)
T PRK11646        302 TLICLFYIGSIIAEPARETLSASLADARARGSYMGFSRLGLALGGAIGYIGGGWLFDL  359 (400)
T ss_pred             HHHHHHHHHHHHHHccHHHHHHhcCCcccchhhhhHHHHHHHHHHHhcccchHHHHHH
Confidence            7778888887777675 88999999999999999999999999999999999999983

>COG2270 Permeases of the major facilitator superfamily [General function prediction only]

Probab=99.13  E-value=6.1e-10  Score=99.57  Aligned_cols=161  Identities=14%  Similarity=0.174  Sum_probs=130.2

Q ss_pred             cchhhhHHHHH-HHhccCccccchhhhhhHHHHHHHHHHHhhhhcccccccccCCchhhHHHHHHHHHHHHHHhccchHH
Q 015847           58 SSLFPFLYFMI-KDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFW  136 (399)
Q Consensus        58 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~  136 (399)
                      +.+......+. .++|++..+      ...+.....+..+++++++|++.||+|.|+++..+.++..+.++..-+.....
T Consensus       269 ~til~~~~~fg~~~~gls~~~------lll~g~~~~vvA~lg~ii~g~Ld~rfg~k~vl~~~lvi~~~~~~~~~~~~~~~  342 (438)
T COG2270         269 NTILAMGGVFGAADLGLSSTE------LLLIGIALSVVAALGAIIAGFLDERFGSKPVLMIGLVILSIAALYLIFLEGEL  342 (438)
T ss_pred             HHHHHHHHHHHHHHcCccHHH------HHHHHHHHHHHHHHHHHHHHHHHHHhCCceeehHHHHHHHHHHHHHHHccccH
Confidence            33444444444 499999999      99999999999999999999999999999999999999998888777777777


Q ss_pred             HHHHHHHHHhhhccchhh-HHHHHhhhccchhhhHHHHHHHHHHHHHHhHHHHhhhhhcCCCCCCCCcccccccccCCcc
Q 015847          137 MAVLTRFLLGSLNGLLGP-IKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPY  215 (399)
Q Consensus       137 ~l~~~r~l~G~~~~~~~~-~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~i~~~l~~~~~~~~~~~gw~~~f~~~~~  215 (399)
                      .+.++-.+.|...|..+. +.++.++..|+++-++.+|+++.....+..+||.+-+.+.+.+++               -
T Consensus       343 ~f~i~gll~g~s~G~~qA~SRSy~~~lvp~~k~~~fFglyaltgra~S~~gp~lv~v~t~iTg~---------------~  407 (438)
T COG2270         343 DFWILGLLVGTSLGGAQASSRSYLARLVPKGKEGRFFGLYALTGRAASFLGPFLVAVITQITGS---------------S  407 (438)
T ss_pred             HHHHHHHHHHHhcchHHHHHHHHHHHhCCCccccceeehhhhhhhHHHHHHHHHHHHHHHHhcc---------------h
Confidence            777778899998888777 599999999999999999999999999999999999999884322               2


Q ss_pred             hhhHHHHHHHHHHHHHHHHhcccC
Q 015847          216 FLPCLCISLFAFGVTIAAFWLPET  239 (399)
Q Consensus       216 ~~~~~~~~~~~~~~~~~~~~~~e~  239 (399)
                      +..+....++..+.++....+|++
T Consensus       408 r~g~~~i~vll~iGl~~L~~v~~~  431 (438)
T COG2270         408 RAGVLSIIVLLLIGLLLLLRVKVP  431 (438)
T ss_pred             hhHHHHHHHHHHhhHhhEEeecCC
Confidence            333355555555555666666654

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=99.12  E-value=7.1e-10  Score=103.98  Aligned_cols=146  Identities=12%  Similarity=0.127  Sum_probs=99.2

Q ss_pred             HHHHHHHHHhhccccchhhhHHHHHHHh--ccCccccchhhhhhHHHHHHHHHHHhhhhcccccccccCCchh-hHHHHH
Q 015847           44 FSIWIIVLCTALPISSLFPFLYFMIKDF--QIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPV-IIMGTA  120 (399)
Q Consensus        44 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~dr~Grr~~-l~~~~~  120 (399)
                      +......++.......+...+|.+.+++  +.+..+      .+...+...++..++.++.|+++||++||+. +....+
T Consensus       245 ~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~s~~~------~~~~~~~~~l~~~~g~l~~g~l~dr~~~r~~~~~~~~~  318 (412)
T TIGR02332       245 MLYTLAYFCLTNTLSAINIWTPQILQSFNQGSSNIM------IGLLAAIPQFCTIFGMIWWSRHSDRLKERKHHTALPYL  318 (412)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHH------hHHHhhHHHHHHHHHHHHHHHHhcccCccHHHHHHHHH
Confidence            3344445555555666778889888775  556666      8899999999999999999999999997774 343443


Q ss_pred             HHHHHHHHHhccchHHHHHHHHHHHhhhccchhhH-HHHHhhhccchhhhHHHHHHHHHHHHHHhHHHHhhhhhcC
Q 015847          121 SVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQ  195 (399)
Q Consensus       121 ~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~i~~~l~~  195 (399)
                      ...++.++....++....+.+-.+.+++.....+. .....|.+|+++|++++|+.+....+|+.++|.+.+.+.+
T Consensus       319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~a~g~~~~~~~~g~~~~p~~~g~i~~  394 (412)
T TIGR02332       319 FAAAGWLLASATDHNLIQLLGIIMASMGSFSAMAIFWTTPDQSISLQARAIAIAVINATGNIGSALSPFLIGILKD  394 (412)
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHHhhhhhhHHHhhcccccchHHHHHHHHHHHHhhhhhhhhhhhhcccccc
Confidence            44433322222223222222222223332222333 4555788999999999999999999999999999999998

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

Probab=99.12  E-value=6.8e-10  Score=99.22  Aligned_cols=150  Identities=18%  Similarity=0.199  Sum_probs=114.7

Q ss_pred             hhHHHHHHHHHHHhhccccchhhhHH-HHHHHhccCccccchhhhhhHHHHHHHHHHHhhhhcccccccccCCchhhHHH
Q 015847           40 ITELFSIWIIVLCTALPISSLFPFLY-FMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMG  118 (399)
Q Consensus        40 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~dr~Grr~~l~~~  118 (399)
                      .++.+.+++.++...-+.-.+...+| ++.++|+.++.+      .|...+.+.+...+..+..|+++||+|.+|++.+.
T Consensus       217 ~~~~W~lsllY~~tFG~Fvgfs~~l~~~~~~~fg~~~~~------Ag~~a~~f~~~g~l~Rp~GG~LsDR~Gg~rv~~~~  290 (417)
T COG2223         217 NKDTWLLSLLYFATFGGFVGFSAYLPMYLVTQFGLSPVT------AGLIAFLFPLIGALARPLGGWLSDRIGGRRVTLAV  290 (417)
T ss_pred             CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhh------HHHHHHHHHHHHHHHHhccchhhhhccchhHHHHH
Confidence            34556666666666666666677777 667889999999      99999999999999999999999999999999998


Q ss_pred             HHHHHHHHHHHhcc-------chHHHHHHHHHHHhhhccchhh-HHHHHhhhccchhhhHHHHHHHHHHHHHHhHHHHhh
Q 015847          119 TASVVIFNTLFGLS-------VNFWMAVLTRFLLGSLNGLLGP-IKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALG  190 (399)
Q Consensus       119 ~~~~~~~~~~~~~~-------~~~~~l~~~r~l~G~~~~~~~~-~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~i~  190 (399)
                      ...++++.....+.       .+....+...+..++..|.-.. ++.++..++|+ +-|.+.|+.....++|+..-|..-
T Consensus       291 f~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~l~~~~G~GnGsvfk~Ip~if~~-~~G~v~G~vga~G~lGGf~lp~~~  369 (417)
T COG2223         291 FVGMALAAALLSLFLTGFGHGGSFVVFVAVFLALFVFAGLGNGSVFKMIPVIFPK-ETGAVTGIVGAIGGLGGFFLPLAF  369 (417)
T ss_pred             HHHHHHHHHHHHccccccccCcchHHHHHHHHHHHHHhccCcchheeechHHHHh-hhhHHHHHHHHhccccccchhHHH
Confidence            88888888777665       3444444444444444444332 36666777764 778899999999999999999999


Q ss_pred             hhhcCC
Q 015847          191 GFLAQP  196 (399)
Q Consensus       191 ~~l~~~  196 (399)
                      +...+.
T Consensus       370 g~~~~~  375 (417)
T COG2223         370 GVSLDL  375 (417)
T ss_pred             HHHHHh
Confidence            988873

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=99.12  E-value=5.1e-10  Score=104.71  Aligned_cols=149  Identities=14%  Similarity=0.169  Sum_probs=99.9

Q ss_pred             HHHHHHhccCccccchhhhhhHHHHHHH-HHHHhhhhcccccccccCCchhhHHHHHHHHHHHHHH---hcc-chHHHHH
Q 015847           65 YFMIKDFQIAKREEDIGSYAGYVGSSFM-FGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLF---GLS-VNFWMAV  139 (399)
Q Consensus        65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~---~~~-~~~~~l~  139 (399)
                      +.+.+++|.++.+      .+++.+... ++..++.++.|++.||+|||+.+..+.++..+..+..   ++. ++.+.++
T Consensus       234 ~~l~~~~G~~~~~------~g~~~~~~~~~~~i~g~~~~g~l~~r~g~~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~~~  307 (402)
T PRK11902        234 TFLIRGAGFSAGE------VGIVNKTLGLAATIVGALAGGTLMVRLGLYRSLMLFGVLQAVSNLGYWVLAVTPKHLWTMA  307 (402)
T ss_pred             HHHHHhcCCCHHH------HHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHH
Confidence            4566778999888      899886654 5678999999999999999998877776665554333   343 4556555


Q ss_pred             HHHHH----HhhhccchhhH-HHHHhhhccchhhhHHHHHHHHHHHHHHhHHHHhhhhhcCCCCCCCCcccccccccCCc
Q 015847          140 LTRFL----LGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFP  214 (399)
Q Consensus       140 ~~r~l----~G~~~~~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~i~~~l~~~~~~~~~~~gw~~~f~~~~  214 (399)
                      +.-++    .|++.+...+. ..++.+.+|.+++    +..+...++|...++.++|.+.+       .+|         
T Consensus       308 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~~~G~l~~-------~~G---------  367 (402)
T PRK11902        308 LAIGIENLCGGMGTAAFVALLMALCNRSFSATQY----ALLSALASVGRVYVGPTSGYLVE-------AYG---------  367 (402)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHH----HHHHHHHHHHHHHHHHHHHHHHH-------HhC---------
Confidence            55444    34444444443 6677777775554    55555567787767778999998       444         


Q ss_pred             chhhHHHHHHHHHHHHHHHHhcccC
Q 015847          215 YFLPCLCISLFAFGVTIAAFWLPET  239 (399)
Q Consensus       215 ~~~~~~~~~~~~~~~~~~~~~~~e~  239 (399)
                      |...+...++++++.++.....+.+
T Consensus       368 ~~~~f~~~~~~~~~~~~~~~~~~~~  392 (402)
T PRK11902        368 WPGFYLMTVVIALPGLALLWLMRGT  392 (402)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            4444477777776666555555444

>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins

Probab=99.12  E-value=4.5e-09  Score=98.62  Aligned_cols=274  Identities=19%  Similarity=0.218  Sum_probs=159.1

Q ss_pred             hhhHHHHHHHhccCccccchhhhhhHHHHHHHHHHHhhhhcccccccccC-----CchhhHHHHHHHHHHHHHHhcc---
Q 015847           61 FPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYG-----RKPVIIMGTASVVIFNTLFGLS---  132 (399)
Q Consensus        61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~dr~G-----rr~~l~~~~~~~~~~~~~~~~~---  132 (399)
                      .+..+.+.+++|+++.+      .....+...+.. ..-++.|.++|-+.     ||+.++++.++.+++.+..+..   
T Consensus        10 ~~~~~~l~~~l~ls~~~------~~~~~~~~~lPw-~~Kp~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~~~~   82 (433)
T PF03092_consen   10 LAIYPFLKDDLGLSPAQ------LQRLSSLASLPW-SIKPLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLALLPAS   82 (433)
T ss_pred             HHHHHHHHHHcCCCHHH------HHHHHHHHhCch-HHhhhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHhcccc
Confidence            34557788999999998      777777777665 35678999999863     5566677777776555555543   


Q ss_pred             -chHHHHHHHHHHHhhhccchhhH-HHHHhhhcc--chhhhHHHHHHHHHHHHHHhHHHHhhhhhcCCCCCCCCcccccc
Q 015847          133 -VNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFR--EEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSES  208 (399)
Q Consensus       133 -~~~~~l~~~r~l~G~~~~~~~~~-~~~~~~~~~--~~~r~~~~~~~~~~~~~g~~~~p~i~~~l~~~~~~~~~~~gw~~  208 (399)
                       .+.....+.-++..+|.....++ -+...|...  ++.||...+.......+|.+++..++|.+.+       ..+.|.
T Consensus        83 ~~s~~~~~~~l~la~~g~a~~DV~aDa~vvE~~~~~p~~~g~lqS~~~~~~~~G~lv~~~l~G~l~~-------~~~~~~  155 (433)
T PF03092_consen   83 ESSAAIAVVLLFLASFGYAFADVAADALVVELARREPESRGDLQSFVWGVRSVGSLVGSLLSGPLLD-------SFGPQG  155 (433)
T ss_pred             cchhhhHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhh-------cCCCeE
Confidence             24555556667777777776664 888888873  3448888889899999999999999999988       444444


Q ss_pred             cccCCcchhhHHHHHHHHHHHHHH-HHhcccCCCCCCCCCCccchhhhhhhhhhhhhhhccccCCcccccccccchhHHH
Q 015847          209 LFGKFPYFLPCLCISLFAFGVTIA-AFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKNWPLMSS  287 (399)
Q Consensus       209 ~f~~~~~~~~~~~~~~~~~~~~~~-~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  287 (399)
                      .|         .+.+...++..+. .+..+|..++...+......  ++.+.....    .++.....++.++.|.++..
T Consensus       156 ~f---------~i~~~~~~l~~~~~~~~~~e~~~~~~~~~~~~~~--~~~~~~~~~----~~~~~~~l~~~~~~~~i~~~  220 (433)
T PF03092_consen  156 VF---------LISAALPLLMLIVALFLLEERKVRPADEVFSFGK--EEVPCLFGS----FREQLSELWRALQQRAIWQP  220 (433)
T ss_pred             Ee---------hHHHHHHHHHHHHHHHhhhhccccccchhhcccc--cccchhhHH----HHHHHHHHHHHHhhhHHHHH
Confidence            44         5555554444434 44444422111111000000  000000000    00111244566777777776


Q ss_pred             HH-HHHHHHhhhhhHHHHHHHhhcCCcccCccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHH
Q 015847          288 II-VYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIP  366 (399)
Q Consensus       288 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  366 (399)
                      .+ ..++.......-.. -..|..++. ..+.|+++...+.+..+..++.+++.. +....-.+..-|+++.+..++..+
T Consensus       221 ~~~~~~~~~~~~~~~~a-~~fy~~~~~-~~gp~fs~~f~~~~~~vg~~~~l~g~~-~y~~~~~~~~~R~~~~~t~~~~~~  297 (433)
T PF03092_consen  221 ILFFIFFFNLPPSISSA-SSFYFQTDA-LGGPHFSPSFYGTLSIVGSIASLLGIL-LYRKYFSNWSWRRIFVVTTLVSVL  297 (433)
T ss_pred             HHHHHHHHHhccCCCCc-cEEEEEecc-ccccccCHHHHHHHHHHHHHHHHHHHH-HHHHHHhCCCHHHHHHHHHHHHHH
Confidence            65 33332222111111 011222111 113458999999888777777777764 555555555666666665555443

Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=99.08  E-value=8.1e-10  Score=106.05  Aligned_cols=143  Identities=17%  Similarity=0.130  Sum_probs=115.0

Q ss_pred             HHHHHHhhccccchhhhHHHHH-HHhccCccccchhhhhhHHHHHHHHHHHhhhhcccccccccCCchhhHHHHHHHHHH
Q 015847           47 WIIVLCTALPISSLFPFLYFMI-KDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIF  125 (399)
Q Consensus        47 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~  125 (399)
                      .+..++...........+|.+. +.+|.++.+      .++......++..++.++.|++.||+|||+.+.++..+.+++
T Consensus       261 ~~~~~~~~~~~~~~~~~~p~~~~~~~g~s~~~------~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~g~~~~~~~  334 (485)
T TIGR00711       261 CVYMSLLGLGLYGSFYLLPLYLQQVLGYTALQ------AGLHILPVGLAPMLSSPIAGRMGDKIDPRKLVTIGLILYAVG  334 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHH
Confidence            3344444444444455667555 457999988      999999999999999999999999999999999998888888


Q ss_pred             HHHHhc----cchHHHHHHHHHHHhhhccchhh-HHHHHhhhccchhhhHHHHHHHHHHHHHHhHHHHhhhhhcC
Q 015847          126 NTLFGL----SVNFWMAVLTRFLLGSLNGLLGP-IKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQ  195 (399)
Q Consensus       126 ~~~~~~----~~~~~~l~~~r~l~G~~~~~~~~-~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~i~~~l~~  195 (399)
                      ..+..+    ..+.+.+....++.|++.+...+ ......+..|+++|+++.++.+....+|+.+|+.+.+.+.+
T Consensus       335 ~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g~~~~  409 (485)
T TIGR00711       335 FYWRAFTFTPDTPFLAIALPQFIRGFGMGCFFMPLTTIALSGLPPHKIARGSSLSNFTRQLGGSIGTALITTILT  409 (485)
T ss_pred             HHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            877662    23566677778889998877654 57777788999999999999999999999999999988875

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []

Probab=99.05  E-value=1.8e-09  Score=98.39  Aligned_cols=142  Identities=25%  Similarity=0.278  Sum_probs=117.9

Q ss_pred             hhHHHHHHHHHHHhhhhcccccccccCCchhhHHHHHHHHHHHHHHhccchHHHHHHHHHHHhhhccchhhH-HHHHhhh
Q 015847           84 AGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEI  162 (399)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~-~~~~~~~  162 (399)
                      .|.+.+...+.-++...+..++.+|+|.|+.++++.++.++=..+++++++.+.+.+.+.+.|+-.+..... .-++++.
T Consensus       261 ~G~l~s~~v~~E~~~m~~~p~li~rig~k~~Lllag~i~~iRi~~~~~~~~~~~i~~~klLH~~e~~l~lva~fkYI~~~  340 (412)
T PF01306_consen  261 YGYLWSVQVFLEALMMFFSPWLINRIGAKNLLLLAGVIMAIRIIGSGFATNPWVISLIKLLHALEFPLLLVAAFKYITAH  340 (412)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHT--SHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHhcChHhHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            899999999999999999999999999999999999999999999999999999999999999988887774 9999999


Q ss_pred             ccchhhhHHHHHH-HHHHHHHHhHHHHhhhhhcCCCCCCCCcccccccccCCcchhhHHHHHHHHHHH-HHHHHhcccCC
Q 015847          163 FREEHQALGLSTV-STAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGV-TIAAFWLPETL  240 (399)
Q Consensus       163 ~~~~~r~~~~~~~-~~~~~~g~~~~p~i~~~l~~~~~~~~~~~gw~~~f~~~~~~~~~~~~~~~~~~~-~~~~~~~~e~~  240 (399)
                      +|+|..++...+. +...++|..+.+.++|.+.|                +.+++..+++.+.+.+.. ++..+.+++++
T Consensus       341 fd~rlsAt~y~v~~~~~~~~~~~i~s~~~G~lyd----------------~~G~~~tylimg~iv~~~~li~~f~l~~~~  404 (412)
T PF01306_consen  341 FDKRLSATLYLVGFQFAKQIGIIILSPLAGYLYD----------------RIGFQHTYLIMGLIVLPFTLISAFTLKKDK  404 (412)
T ss_dssp             S-GGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHHHHHHHHHHS--SS
T ss_pred             CCHhHHHHHHHHHHHHHHHHHHHHHhhhHHhhHh----------------hcCcHHHHHHHHHHHHHHHHHheeeecCCC
Confidence            9999998988885 88999999999999999998                555555557777666654 44456666544


Q ss_pred             C
Q 015847          241 H  241 (399)
Q Consensus       241 ~  241 (399)
                      +
T Consensus       405 ~  405 (412)
T PF01306_consen  405 K  405 (412)
T ss_dssp             S
T ss_pred             c
Confidence            3

The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.

>TIGR00901 2A0125 AmpG-related permease

Probab=99.05  E-value=1.1e-09  Score=100.73  Aligned_cols=132  Identities=15%  Similarity=0.128  Sum_probs=101.8

Q ss_pred             HHHHHHHHHHhhccccchhhhHHHHHHHhccCccccchhhhhhHHHHHHH-HHHHhhhhcccccccccCCchhhHHHHHH
Q 015847           43 LFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFM-FGRALTSVFWGLVADRYGRKPVIIMGTAS  121 (399)
Q Consensus        43 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~G~l~dr~Grr~~l~~~~~~  121 (399)
                      ++...+..++............|.+.+++|.+..+      .+.+.++.. ++..++.+++|++.||+|||+.+..+.++
T Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~------~g~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~  284 (356)
T TIGR00901       211 ALLLLLLIVLYKLGDSAATVLTTLFLLDMGFSKEE------IALVAKINGLLGAILGGLIGGIIMQPLNILYALLLFGIV  284 (356)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHH------HHHHhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence            33333344444455555667777777778999888      888887665 57789999999999999999999888888


Q ss_pred             HHHHHHHHhcc-----------chHHHHHHHHHHHhhhccchhhH-HHHHhhhccchhhhHHHHHHHHHHH
Q 015847          122 VVIFNTLFGLS-----------VNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWG  180 (399)
Q Consensus       122 ~~~~~~~~~~~-----------~~~~~l~~~r~l~G~~~~~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~  180 (399)
                      .+++..+..+.           ++.+.+..+.++.+++.+...+. .+++.|.+|+++||+.+|+.+...+
T Consensus       285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~  355 (356)
T TIGR00901       285 QALTNAGFVWLASNGHHDGITFPHLLMLFLTITLEAVTGGLGTVAFVAFLSKLSNPKFGATQMALLSSLSA  355 (356)
T ss_pred             HHHHHHHHHHHHhcCcccccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHh
Confidence            77766654432           45577777888899998887775 9999999999999999999877654

>PF13347 MFS_2: MFS/sugar transport protein

Probab=99.04  E-value=4.3e-09  Score=99.33  Aligned_cols=149  Identities=18%  Similarity=0.211  Sum_probs=124.0

Q ss_pred             hHHHHHHHHHHHhhccccchhhhHHHHHHHhccCccccchhhhhhHHHHHHHHHHHhhhhcccccccccCCchhhHHHHH
Q 015847           41 TELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTA  120 (399)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~  120 (399)
                      +.+..+....++............+++.++.--++..      .+.+..+..++..++.+++++++||+|+|+.+..+.+
T Consensus       225 r~~~~l~~~~~~~~~~~~~~~~~~~y~~~~vl~~~~~------~~~~~~~~~~~~~v~~~~~~~l~~r~gk~~~~~~~~~  298 (428)
T PF13347_consen  225 RPFRILLLAFFLQWLAFALMNTFLPYYFTYVLGNEGL------ISIFMLIFFVASIVGSPLWGRLSKRFGKKKVYIIGLL  298 (428)
T ss_pred             chHHHHHHHHHHHHhhhhhhhhHHHHHHHHHhcCchh------hHHHHHHHHHHHHHHHHHHHHHHHHccceeehhhhHH
Confidence            4555666667777777777777777776654333355      7888889999999999999999999999999999999


Q ss_pred             HHHHHHHHHhccc--hHHHHHHHHHHHhhhccchhhH-HHHHhhhccc-------hhhhHHHHHHHHHHHHHHhHHHHhh
Q 015847          121 SVVIFNTLFGLSV--NFWMAVLTRFLLGSLNGLLGPI-KAYACEIFRE-------EHQALGLSTVSTAWGIGLIIGPALG  190 (399)
Q Consensus       121 ~~~~~~~~~~~~~--~~~~l~~~r~l~G~~~~~~~~~-~~~~~~~~~~-------~~r~~~~~~~~~~~~~g~~~~p~i~  190 (399)
                      +.+++.++..+.+  |.+.+++..++.|++.+...+. .++++|..+.       ++.|..++..+....+|..+++.+.
T Consensus       299 ~~~~~~~~~~~~~~~~~~~~~i~~~l~gi~~~~~~~~~~a~~ad~id~~e~~tg~r~~g~~~s~~~~~~k~~~~la~~i~  378 (428)
T PF13347_consen  299 LAALGFLLLFFLGPGSPWLVLILFILAGIGYGAFFVIPWAMLADVIDYDEWKTGRRREGMYFSVNSFFIKIGQGLAGAIV  378 (428)
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHhHhhhcccccccccccccchhhHHHhcCCCchHHHHHhhhhhhHHHHHHHHHHH
Confidence            9999998888875  8999999999999998887775 8999998873       3458889999999999999999999


Q ss_pred             hhhcC
Q 015847          191 GFLAQ  195 (399)
Q Consensus       191 ~~l~~  195 (399)
                      +.+.+
T Consensus       379 g~~l~  383 (428)
T PF13347_consen  379 GLLLA  383 (428)
T ss_pred             HHHHH
Confidence            98876

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=99.04  E-value=2.4e-09  Score=99.80  Aligned_cols=123  Identities=11%  Similarity=0.033  Sum_probs=84.6

Q ss_pred             hHH-HHHHHhccCccccchhhhhhHHHHHHHHHHHhhhhcccccccccCCchhhHHHHHHHHHHHHHHhccchHHHHHHH
Q 015847           63 FLY-FMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLT  141 (399)
Q Consensus        63 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~  141 (399)
                      ..| .+.+++|.++.+      .+...+...++..++.++.|++.||+|||+.+.++..+..++.++..+.++.+..+..
T Consensus       225 ~~~~~~~~~~g~~~~~------~~~~~~~~~~~~i~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  298 (392)
T PRK10473        225 TSPVLLMEQMGFSRGE------YAIIMALTAGVSMTVSFSTPFALGIFKPRTLMLTSQVLFLAAGITLALSPSHAVSLFG  298 (392)
T ss_pred             hCHHHHHHHcCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334 345678988888      8999999999999999999999999999999999998888888777776655544444


Q ss_pred             HHHHhhhccchhhHHHHHhhhccchhhhHHHHHHHHHHHHHHhHHHHhhhhhcC
Q 015847          142 RFLLGSLNGLLGPIKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQ  195 (399)
Q Consensus       142 r~l~G~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~i~~~l~~  195 (399)
                      -.+.+.+.+...+ .....+..|.++|+   +.......++..+++.+++++.+
T Consensus       299 ~~l~~~g~~~~~~-~~~~~~~~~~~~~~---g~~~~~~~~~~~~g~~~~~~l~~  348 (392)
T PRK10473        299 ITLICAGFSVGFG-VAMSQALGPFSLRA---GVASSTLGIAQVCGSSLWIWLAA  348 (392)
T ss_pred             HHHHHHHHHHHhH-HHHHHHhccCcccc---cHHHHHHHHHHHHHHHHHHHHHH
Confidence            4444443333222 12223344544443   44445556777777777777776

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=99.04  E-value=5.2e-10  Score=102.51  Aligned_cols=134  Identities=21%  Similarity=0.258  Sum_probs=109.7

Q ss_pred             HHHHHhhccccchhhhHHHH-HHHhccC-ccccchhhhhhHHHHHHHHHHHhhhhcccccccccCCchhhHHHHHHHHHH
Q 015847           48 IIVLCTALPISSLFPFLYFM-IKDFQIA-KREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIF  125 (399)
Q Consensus        48 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~  125 (399)
                      ...+.............|.+ .+++|.+ ..+      .+...+...++..++.++.|+++||+|+|+..........+.
T Consensus       213 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  286 (352)
T PF07690_consen  213 IAFFLFFFVFSGFSFFLPLYLQEVLGFSGPSQ------AGLLFSIFGIVGIIGSLLAGRLSDRFGRRRRLLIAILLLILG  286 (352)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHCCHHHHCCTHHH------HHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             hhhhHHHHHHHHhhcccchhhhhccCCCHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHH
Confidence            33333344445577777876 7889999 677      899999999999999999999999999988888887777777


Q ss_pred             HHHHhccc---hHHHHHHHHHHHhhhccchhhH-HHHHhhhccchhhhHHHHHHHHHHHHHHhHHH
Q 015847          126 NTLFGLSV---NFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGP  187 (399)
Q Consensus       126 ~~~~~~~~---~~~~l~~~r~l~G~~~~~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p  187 (399)
                      .+...+..   +....++..++.|++.+...+. .+++.|.+|+++|+++.|+.+...++|..+||
T Consensus       287 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~igP  352 (352)
T PF07690_consen  287 ALGLLLLPFSSSPVWLIIALFLIGFGFGIVFPILFSLIQELVPPEYRGTAFGLFNSIGSLGGIIGP  352 (352)
T ss_dssp             HHHHCCSHHHCHHHHHHHHHHHHHHHHHHHCHHHHHHHHCCCHTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHCC
Confidence            76666543   4466667788899988887775 99999999999999999999999999999987

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=99.03  E-value=3e-09  Score=112.95  Aligned_cols=131  Identities=14%  Similarity=0.128  Sum_probs=112.9

Q ss_pred             chhhhHH-HHHHHhccCcc-ccchhhhhhHHHHHHHHHHHhhhhcccccccccCCchhhHHHHHHHHHHHHHHhccchHH
Q 015847           59 SLFPFLY-FMIKDFQIAKR-EEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFW  136 (399)
Q Consensus        59 ~~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~  136 (399)
                      .....+| ++.+++|.+.. +      .+++.+...++.++++++.|+++||+++|+.+.++.++.+++.++..+..+.+
T Consensus       250 ~~~~~~~~~~~~~~g~s~~~~------~g~~~~~~~ig~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~  323 (1146)
T PRK08633        250 LAQANFPAYAKEVLGLDNTFQ------VQYLLAASAIGIGIGSLLAGRLSGRHIELGLVPLGALGLALSLFLLPTAPSLA  323 (1146)
T ss_pred             HHHHhhHHHHHHHhCCCcHHH------HHHHHHHHHHHHHHHHHHHHHHhCCceEccchhHHHHHHHHHHHHHHHhhhHH
Confidence            3444555 44567899888 7      99999999999999999999999999999999999888888888888888888


Q ss_pred             HHHHHHHHHhhhccchhh-HHHHHhhhccchhhhHHHHHHHHHHHHHHhHHHHhhhhhcC
Q 015847          137 MAVLTRFLLGSLNGLLGP-IKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQ  195 (399)
Q Consensus       137 ~l~~~r~l~G~~~~~~~~-~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~i~~~l~~  195 (399)
                      .+++..++.|++.+...+ ..+++.+..|+++||+++++.+....+|..+++.+++.+..
T Consensus       324 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~rg~~~~~~~~~~~lg~~~~~~~~~~l~~  383 (1146)
T PRK08633        324 SVLVLFFLFGFSAGLFIVPLNALIQFRAPEKELGKVLAANNFLQNVGMLLFLALTTLFSG  383 (1146)
T ss_pred             HHHHHHHHHHHHHHHhhHHHHHHHhhcCCccchhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            888888999998887666 48999999999999999999999999999888888877653

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=99.02  E-value=2e-09  Score=103.51  Aligned_cols=140  Identities=17%  Similarity=0.131  Sum_probs=112.3

Q ss_pred             HHHhhccccchhhhHHH-HHHHhccCccccchhhhhhHHHHHHHHHHHhhhhcccccccccCCchhhHHHHHHHHHHHHH
Q 015847           50 VLCTALPISSLFPFLYF-MIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTL  128 (399)
Q Consensus        50 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~  128 (399)
                      .+.............|. +++.+|.++.+      .|+......++..++.++.|++.||+|+|+.+..+.++.+++.++
T Consensus       268 ~~~~~~~~~~~~~~~~~~lq~v~g~s~~~------ag~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~g~~~~~~~~~~  341 (495)
T PRK14995        268 AMTAMITLVGFELLMAQELQFVHGLSPLE------AGMFMLPVMVASGFSGPIAGILVSRLGLRLVATGGMALSALSFYG  341 (495)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHH
Confidence            33333333334455564 45568999999      999999999999999999999999999999999888888777665


Q ss_pred             Hhc---cchHHHHHHHHHHHhhhccchhh-HHHHHhhhccchhhhHHHHHHHHHHHHHHhHHHHhhhhhcC
Q 015847          129 FGL---SVNFWMAVLTRFLLGSLNGLLGP-IKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQ  195 (399)
Q Consensus       129 ~~~---~~~~~~l~~~r~l~G~~~~~~~~-~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~i~~~l~~  195 (399)
                      ...   .++.+......++.|++.|...+ ....+.+..|+++++.+.++.+....+|..+|+.+.+.+.+
T Consensus       342 l~~~~~~~~~~~~~~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lG~~~G~ai~g~i~~  412 (495)
T PRK14995        342 LAMTDFSTQQWQAWGLMALLGFSAASALLASTSAIMAAAPPEKAAAAGAIETMAYELGAGLGIAIFGLLLS  412 (495)
T ss_pred             HHHhcCCCchHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCHHhcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            443   24566666778899999888666 57788888999999999999999999999999999988865

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=99.01  E-value=3.4e-09  Score=98.49  Aligned_cols=127  Identities=18%  Similarity=0.259  Sum_probs=93.7

Q ss_pred             hhhhHHHH-HHHhccCccccchhhhhhHHHHHHHHHHHhhhhcccccccccCCchhhHHHHHHHHHHHHHHhcc-----c
Q 015847           60 LFPFLYFM-IKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLS-----V  133 (399)
Q Consensus        60 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~-----~  133 (399)
                      .....|.+ .+++|.++.+      .+++.+...++..++.++.|++.||+|||+.+..+..+..++.+++...     +
T Consensus       225 ~~~~~~~~~~~~~g~~~~~------~g~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  298 (385)
T TIGR00710       225 FFSGAPFVYIDIMGVSPSV------FGLLFALNIIAMIFGGFLNGRFIKKWGAKSLLRMGLILFAVSAVLLEITAILGLG  298 (385)
T ss_pred             HHHcChHHHHHHcCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            34445644 4578998888      9999999999999999999999999999999988887777766655442     2


Q ss_pred             hHHHHHHHHHHHhhhccchhhH-HHHHhhhccchhhhHHHHHHHHHHH-HHHhHHHHhhhhhc
Q 015847          134 NFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWG-IGLIIGPALGGFLA  194 (399)
Q Consensus       134 ~~~~l~~~r~l~G~~~~~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~-~g~~~~p~i~~~l~  194 (399)
                      +...++...++.|++.+...+. .....|..| ++|+++.++.+.... .|...+|.++ .+.
T Consensus       299 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~g~i~~~~~~-~~~  359 (385)
T TIGR00710       299 SWAMIIGPMMFVGIGNSMISSIAMAYALEDFP-HVAGTASALFGTLRLVLGAIVGYLVS-LIH  359 (385)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc-ccchHHHHHHHHHHHHHHHHHHHHHH-hcc
Confidence            3444555567788887776664 777788776 679999999876655 4555555544 443

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors)

Probab=98.99  E-value=2e-07  Score=91.26  Aligned_cols=158  Identities=15%  Similarity=0.149  Sum_probs=113.2

Q ss_pred             hhhHHHHHHHhccCccccchhhhhhHHHHHHHHHHHhhhhcccccccc-cCCchhhHHHHHHHHHHHHHHhccch-----
Q 015847           61 FPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADR-YGRKPVIIMGTASVVIFNTLFGLSVN-----  134 (399)
Q Consensus        61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~dr-~Grr~~l~~~~~~~~~~~~~~~~~~~-----  134 (399)
                      .....++.+.+|.+..+      ...+...+....-+..++.|.++|+ +||++.+.++.++..++.++.++...     
T Consensus         8 aiLvlYl~~~lg~~~~~------A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~~~~~~   81 (654)
T TIGR00926         8 TILVLYFLNFLGFSEST------STVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAIPSSGH   81 (654)
T ss_pred             HHHHHHHHHHcCCcHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccCccccc
Confidence            34445667778888887      7777777777777888999999997 59999999999999999887766421     


Q ss_pred             ---HHHHHHHHHHHhhhccchhhH-HHHHhhhccch---hhhHHHHHHHHHHHHHHhHHHHhhhhhcCCCCCCCCccccc
Q 015847          135 ---FWMAVLTRFLLGSLNGLLGPI-KAYACEIFREE---HQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSE  207 (399)
Q Consensus       135 ---~~~l~~~r~l~G~~~~~~~~~-~~~~~~~~~~~---~r~~~~~~~~~~~~~g~~~~p~i~~~l~~~~~~~~~~~gw~  207 (399)
                         ....+++-.+..+|.|..-|+ .+...|.++++   +|-..+.++..+.++|+.+++.+.+++.+..+.+..     
T Consensus        82 ~~~~~~~l~gLaLia~G~GgiKp~vsaf~gdqf~~~~~~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~~~fg~-----  156 (654)
T TIGR00926        82 PLHDLLDLLGLALIALGTGGIKPCVSAFGGDQFEERQLSLRSRFFSFFYFAINAGSLISTIITPILRGDVGCFGC-----  156 (654)
T ss_pred             chHHHHHHHHHHHHHhhccccccCchhhhHhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccc-----
Confidence               123455566667788887775 89999999754   467788888999999999999999988752111000     


Q ss_pred             ccccCCcchhhHHHHHHHHHHHHHHH
Q 015847          208 SLFGKFPYFLPCLCISLFAFGVTIAA  233 (399)
Q Consensus       208 ~~f~~~~~~~~~~~~~~~~~~~~~~~  233 (399)
                          ..+|...+.+.++..++.++..
T Consensus       157 ----~~~~~~aF~i~~i~m~ia~lvf  178 (654)
T TIGR00926       157 ----QDCYPLAFGVPAILMILALIVF  178 (654)
T ss_pred             ----CcchHHHHHHHHHHHHHHHHHH
Confidence                1235555566666655554443

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=98.99  E-value=1.2e-08  Score=93.97  Aligned_cols=144  Identities=12%  Similarity=0.053  Sum_probs=96.7

Q ss_pred             hHHHHHHHHHHHhhccccchhhhHHHHHHHhccCccccchhhhhhHHHHHHHHHHHhhhhcccccccccCCc---hhhHH
Q 015847           41 TELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRK---PVIIM  117 (399)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~dr~Grr---~~l~~  117 (399)
                      +.++.+....++.......+..++|.+.++.|.+. +      .+...++..+...++.   ++++||.+||   +....
T Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~wlp~~L~~~g~s~-~------~~~~~~l~~~~g~~g~---~~~~d~~~r~~~r~~~~~  261 (368)
T TIGR00903       192 KDLWIIGAILGFGVALFDNLAIWLEAALRPAGLED-I------AGDAVALAILAGLIGV---AVIPDRVARAGLRSIYIR  261 (368)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCh-H------HHHHHHHHHHHHHHHH---HHhhHHhhhhhhHHHHHH
Confidence            34455555666666666677788998888877664 3      4555555555555554   6777777543   33332


Q ss_pred             -HHHHHHHHHHHHhccchHHHHHHHHHHHhhhccchhh-HHHHHhhhccchhhhHHHHHHHHHHHHHHhHHHHhhhhhc
Q 015847          118 -GTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGP-IKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLA  194 (399)
Q Consensus       118 -~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~-~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~i~~~l~  194 (399)
                       ..++.++.....++.++....++.-.+.+++.....+ .+++.+|.+|++.|+++.|+.+....+|+..+|.+.+.+.
T Consensus       262 ~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~rgt~~G~~~~~g~~~~~~~~~~~~~~~  340 (368)
T TIGR00903       262 AAALLIAAFFLALAFELNRLALFAFIGIAGLLMLPAYAIIMDWIGKFCDKELHGKAAGAIGFTSRAISVALALAAMLFI  340 (368)
T ss_pred             HHHHHHHHHHHHHHHccccHHHHHHHHHHHHhhhhhHHHHHHHHHHhcchhhcCcccchhhHHHHHHHHHHHHHHHHHh
Confidence             3344444444445555544444445556665555545 5889999999999999999999999999999999988776

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=98.97  E-value=5e-09  Score=111.05  Aligned_cols=147  Identities=13%  Similarity=0.088  Sum_probs=114.4

Q ss_pred             HHHHHHHHHHhhccccchhhhHHHHH-HHhccCccccchhhhhhHHHHHHHHHHHhhhhcccccccccCCchhhHHHHHH
Q 015847           43 LFSIWIIVLCTALPISSLFPFLYFMI-KDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTAS  121 (399)
Q Consensus        43 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~  121 (399)
                      ++...+..++..+........+|.+. +.+|.+..+      .|++.+.+.++.++++++.|+++|+.++++.+..+.++
T Consensus       227 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~~------~g~~~~~~~~g~~ig~~~~g~l~~~~~~~~~~~~~~~~  300 (1140)
T PRK06814        227 IWLAILGISWFWLVGAVVLSQLPLLAKETLGGDENV------ATLFLAVFSVGVAVGSFLASKLSEGRITLLYVPIGALL  300 (1140)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCchHH------HHHHHHHHHHHHHHHHHHHHHHhCCceeeeeehHHHHH
Confidence            33333333333333444555667555 557999888      99999999999999999999999988887776666666


Q ss_pred             HHHHHHHHhcc--------------------chHHHHHHHHHHHhhhccchhh-HHHHHhhhccchhhhHHHHHHHHHHH
Q 015847          122 VVIFNTLFGLS--------------------VNFWMAVLTRFLLGSLNGLLGP-IKAYACEIFREEHQALGLSTVSTAWG  180 (399)
Q Consensus       122 ~~~~~~~~~~~--------------------~~~~~l~~~r~l~G~~~~~~~~-~~~~~~~~~~~~~r~~~~~~~~~~~~  180 (399)
                      .+++.+..++.                    ++.+.+++..++.|++.+...+ ..+++.+.+|++.||+++|..+....
T Consensus       301 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~G~v~g~~~~~~~  380 (1140)
T PRK06814        301 MGLFGLDLAFASSSVPAEPAQLKSILVFLSKRHGWRILIDLFGLAAAGGLYIVPLFAALQAWANPAHRARVIAANNVLNA  380 (1140)
T ss_pred             HHHHHHHHHhcccccccccccccchhhhhcccccHHHHHHHHHHHHHHHHhHHHHHHHHHhhCCcccceeeeHHHHHHHH
Confidence            55555433332                    6777788888899998888766 59999999999999999999999999


Q ss_pred             HHHhHHHHhhhhhcC
Q 015847          181 IGLIIGPALGGFLAQ  195 (399)
Q Consensus       181 ~g~~~~p~i~~~l~~  195 (399)
                      +|..+++++.+.+.+
T Consensus       381 ~~~~ig~~~~g~l~~  395 (1140)
T PRK06814        381 AFMVAGTIILALLQA  395 (1140)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            999999999999874

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=98.97  E-value=9.2e-09  Score=96.01  Aligned_cols=149  Identities=19%  Similarity=0.125  Sum_probs=96.2

Q ss_pred             hHHHHHHHHHHHhhccccchhhhHHHHHHHhccCccccchhhhhhHHHHHHHHHHHhhhhcccccccccCCchhhHHHHH
Q 015847           41 TELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTA  120 (399)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~  120 (399)
                      ++.+.+++.+++.+.....+...+|.+.++ ..+...      ......+..+...+..+++|+++||+|+||++.++.+
T Consensus       252 ~~~Wllslly~~tFG~fvg~s~~lp~~~~~-~~~~~~------~l~~~~l~~l~~~l~rplgG~LADRiG~~~vl~~~~i  324 (462)
T PRK15034        252 LHLWLLSLLYLATFGSFIGFSAGFAMLAKT-QFPDVN------ILRLAFFGPFIGAIARSVGGAISDKFGGVRVTLINFI  324 (462)
T ss_pred             CchhHHHHHHHHHHHHHHHHHHHHHHHHHH-HcChHH------HHHHHHHHHHHHHHHHHhhHHHHHhcCchHHHHHHHH
Confidence            344555555555555555556667766544 222222      3333444567778889999999999999999998887


Q ss_pred             HHHHHHHHHh-cc-----chHHHHHHHHHHHhhhccchhh-HHHHHhhhccc---------------------hhhhHHH
Q 015847          121 SVVIFNTLFG-LS-----VNFWMAVLTRFLLGSLNGLLGP-IKAYACEIFRE---------------------EHQALGL  172 (399)
Q Consensus       121 ~~~~~~~~~~-~~-----~~~~~l~~~r~l~G~~~~~~~~-~~~~~~~~~~~---------------------~~r~~~~  172 (399)
                      ...+...... ..     .+++.+.+..+...++.|.... ...++.+++|+                     ++-|.+.
T Consensus       325 ~~~i~~~~~~l~lp~~~~~~~~~~~~~~~~l~~~~G~gngsvfk~ip~~f~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~  404 (462)
T PRK15034        325 FMAIFSALLFLTLPGTGSGNFIAFYAVFMGLFLTAGLGSGSTFQMIAVIFRQITIYRVKMKGGSDEQAQREAVTETAAAL  404 (462)
T ss_pred             HHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcccchHHHHhhHHHHhhhhhhcccccccchhHHhhHHHHHHHHHH
Confidence            7766653322 11     2455555555444445555433 36667676663                     2567888


Q ss_pred             HHHHHHHHHHHhHHHHhhhhhcCC
Q 015847          173 STVSTAWGIGLIIGPALGGFLAQP  196 (399)
Q Consensus       173 ~~~~~~~~~g~~~~p~i~~~l~~~  196 (399)
                      |+..+..++|+.+-|.+-+...+.
T Consensus       405 G~v~a~G~~Ggf~~p~~~g~~~~~  428 (462)
T PRK15034        405 GFISAIGAVGGFFIPQAFGMSLNM  428 (462)
T ss_pred             HHHHHHHHcccchhhHHHHHHHHH
Confidence            899999999999999887777763

>PRK11043 putative transporter; Provisional

Probab=98.96  E-value=9.6e-09  Score=96.12  Aligned_cols=129  Identities=11%  Similarity=0.036  Sum_probs=96.0

Q ss_pred             hhhhHHHHHHHhccCccccchhhhhhHHHHHHHHHHHhhhhcccccccccCCchhhHHHHHHHHHHHHHH---hc--cch
Q 015847           60 LFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLF---GL--SVN  134 (399)
Q Consensus        60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~---~~--~~~  134 (399)
                      .....|.+.+++|.+..+      .++......++..++..+.+++.||+|+|+.+....+..+++.+..   ..  .++
T Consensus       222 ~~~~~p~~~~~~g~s~~~------~g~~~~~~~~~~~~g~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  295 (401)
T PRK11043        222 WLTGSPFILEQMGYSPAD------IGLSYVPQTIAFLVGGYGCRAALQKWGGEQLLPWLLVLFAVSVIAIWLASLLSHPS  295 (401)
T ss_pred             HHHHhHHHHHHcCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHhccCc
Confidence            344567777888998888      8888888888889999999999999999987665554444433222   12  345


Q ss_pred             HHHHHHHHHHHhhhccchhhH-HHHHhhhccchhhhHHHHHHHHHHHHHHhHHHHhhhhhcC
Q 015847          135 FWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQ  195 (399)
Q Consensus       135 ~~~l~~~r~l~G~~~~~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~i~~~l~~  195 (399)
                      .+.+++...+.|++.+...+. .+...|..| ++|+++.++.+.....+...++.+.+.+.+
T Consensus       296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~~~~~~~~~~g~l~~  356 (401)
T PRK11043        296 LVPLLIPFCVMAAANGAIYPIVVAQALRPFP-QATGKAAALQNTLQLGLCFLASLLVSALIS  356 (401)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhCc-ccChHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence            555556667777777776664 666667765 679999999998888888888888888876

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=98.96  E-value=1.9e-08  Score=93.80  Aligned_cols=122  Identities=13%  Similarity=0.095  Sum_probs=99.6

Q ss_pred             HHHHHhccCccccchhhhhhHHHHHHHHHHHhhhhcccccccccCCchhhHHHHHHHHHHHHHHhccchHHHHHHHHHHH
Q 015847           66 FMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLL  145 (399)
Q Consensus        66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~  145 (399)
                      ...+.+|.++.+      .|++.+...++..++++..+++.||.++|+++..+.. .++..+..++.++++...+..++.
T Consensus       231 ~~~~~lg~s~~~------~G~~~~~~~~g~i~g~~~~~~l~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~  303 (393)
T PRK11195        231 WAPVALGITLNQ------PAYLQAVVAIGIAVGAGAAARLVTLETVLRVLPAGIL-MGLVVLLMALQHSLLPAYPLLILI  303 (393)
T ss_pred             HHHHHcCCChhH------HHHHHHHHHHHHHHHHHHHHHHhcCCcccchHHHHHH-HHHHHHHHHHHhHHHHHHHHHHHH
Confidence            445668999988      9999999999999999999999999999988887753 344444555667777777777889


Q ss_pred             hhhccchhh-HHHHHhhhccchh-hhHHHHHHHHHHHHHHhHHHHhhhhhc
Q 015847          146 GSLNGLLGP-IKAYACEIFREEH-QALGLSTVSTAWGIGLIIGPALGGFLA  194 (399)
Q Consensus       146 G~~~~~~~~-~~~~~~~~~~~~~-r~~~~~~~~~~~~~g~~~~p~i~~~l~  194 (399)
                      |++.+...+ ..+.+.|..|++. +|++.++.+....+|..++..+.+.+.
T Consensus       304 G~~~g~~~~~~~~~~q~~~~~~~~~g~~~a~~~~~~~~~~~~~~~~~~~~~  354 (393)
T PRK11195        304 GALGGFFVVPMNALLQHRGHVLVGAGHSIAVQNFNENLAMLLMLGLYSLLV  354 (393)
T ss_pred             HHhhhhhhhhHHHHHHhhCcccccchhHHHHHhHHHHHHHHHHHHHHHHHH
Confidence            998777665 5777888766654 799999999999999999999998774

>PRK09848 glucuronide transporter; Provisional

Probab=98.95  E-value=1.6e-09  Score=102.90  Aligned_cols=147  Identities=16%  Similarity=0.145  Sum_probs=106.0

Q ss_pred             HHHHHHHHHHhhccccchhhhHHHHHH-HhccCccccchhhhhhHHHHHHHHHHHhhhhcccccccccCCchhhHHHHHH
Q 015847           43 LFSIWIIVLCTALPISSLFPFLYFMIK-DFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTAS  121 (399)
Q Consensus        43 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~  121 (399)
                      +....+..++............|++.+ .+|.+...      .++......++..++.++.+++.||+|+|+++.++.++
T Consensus       230 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~------~~~~~~~~~~~~~~~~~l~~~l~~r~g~~~~~~~g~~~  303 (448)
T PRK09848        230 LFMLCIGALCVLISTFAVSASSLFYVRYVLNDTGLF------TVLVLVQNLVGTVASAPLVPGMVARIGKKNTFLIGALL  303 (448)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhheeeEeeecCChHHH------HHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHH
Confidence            333333344444433344444554433 45654433      44444444677788999999999999999999999988


Q ss_pred             HHHHHHHHhccc--hHHHHHHHHHHHhhhccchhhH-HHHHhhhccch-------hhhHHHHHHHHHHHHHHhHHHHhhh
Q 015847          122 VVIFNTLFGLSV--NFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREE-------HQALGLSTVSTAWGIGLIIGPALGG  191 (399)
Q Consensus       122 ~~~~~~~~~~~~--~~~~l~~~r~l~G~~~~~~~~~-~~~~~~~~~~~-------~r~~~~~~~~~~~~~g~~~~p~i~~  191 (399)
                      .+++.+...+.+  +.+.+++..++.|+|.+...+. .++.+|..|.+       ++|...+..+....+|..+|+.+.+
T Consensus       304 ~~i~~~~~~~~~~~~~~~~~~~~~l~g~G~~~~~~~~~al~~~~~~~~~~~~g~r~~G~~~~~~~~~~klg~aig~~i~g  383 (448)
T PRK09848        304 GTCGYLLFFWVSVWSLPVALVALAIASIGQGVTMTVMWALEADTVEYGEYLTGVRIEGLTYSLFSFTRKCGQAIGGSIPA  383 (448)
T ss_pred             HHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhCccchhHHHHHHHHHHHHHHHHHHHHHH
Confidence            888877766643  5667777778889988887664 88888888754       3588999999999999999999999


Q ss_pred             hhcC
Q 015847          192 FLAQ  195 (399)
Q Consensus       192 ~l~~  195 (399)
                      .+.+
T Consensus       384 ~~l~  387 (448)
T PRK09848        384 FILG  387 (448)
T ss_pred             HHHH
Confidence            8876

>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1

Probab=98.94  E-value=6.2e-07  Score=82.97  Aligned_cols=297  Identities=14%  Similarity=0.139  Sum_probs=168.9

Q ss_pred             HHHHHHHHHHHhhccccchhhhHHHHHHHhcc-CccccchhhhhhHHHHHHHHHHHhhhhcccccccccCCchhhHHHHH
Q 015847           42 ELFSIWIIVLCTALPISSLFPFLYFMIKDFQI-AKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTA  120 (399)
Q Consensus        42 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~  120 (399)
                      ..+.++...++...+.-+.....+.+..+... +--.      .+.....-.+..++.++..|.+.||..|.++...+.+
T Consensus         3 ~~~~Ly~sh~ls~w~dR~w~Fa~~L~L~~i~p~sLl~------~siygl~~~~~~~~f~~~vG~~iD~~~Rl~~~~~~l~   76 (432)
T PF06963_consen    3 ALWRLYLSHFLSTWGDRMWEFAVPLFLISIFPGSLLP------VSIYGLVRSLSAILFGPWVGRWIDRSPRLKVIRTSLV   76 (432)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHH------HHHHHHHHHHHHHHhhHHHHHHHhCCcchhhHHHHHH
Confidence            34567778888888888888888877666533 2222      4555555566778888999999999999998766654


Q ss_pred             HHHHH----HHHHhc----cc----hHHH---HHHHHHHHhhhccchhhHH--HHHhhhc------cchhhhHHHHHHHH
Q 015847          121 SVVIF----NTLFGL----SV----NFWM---AVLTRFLLGSLNGLLGPIK--AYACEIF------REEHQALGLSTVST  177 (399)
Q Consensus       121 ~~~~~----~~~~~~----~~----~~~~---l~~~r~l~G~~~~~~~~~~--~~~~~~~------~~~~r~~~~~~~~~  177 (399)
                      ..-++    +.+...    .+    +.+.   +++.-.+.|...-....+.  +.=-||.      +++.+.+.++.+.-
T Consensus        77 ~Qn~sv~~s~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~i~~Las~~~~iavERDWVvvi~~~~~~~La~~NA~mRR  156 (432)
T PF06963_consen   77 VQNLSVAASCALFLLLLSYPSSSSQSSWLFIALFALLILLGAIERLASIANTIAVERDWVVVIAGGDPGALARMNATMRR  156 (432)
T ss_pred             HHHHHHHHHHHHHHHHHhCCccccccchHHHHHHHHHHHHHHHHHHHHhhhhheeccchhhhhcCCChhhHHHHHHHHHH
Confidence            43322    222211    11    1122   2222222222222222222  2223332      34556677777777


Q ss_pred             HHHHHHhHHHHhhhhhcCCCCCCCCcccccccccCCcchhhHHHHHHHHHHHHHH-HHhc-------ccCCCCCCCCCCc
Q 015847          178 AWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIA-AFWL-------PETLHRHNDDDDS  249 (399)
Q Consensus       178 ~~~~g~~~~p~i~~~l~~~~~~~~~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~-~~~~-------~e~~~~~~~~~~~  249 (399)
                      .-.+.-+++|++.|.+.+                ..+......+.++..+..... ++++       |+-..++++++++
T Consensus       157 IDL~ckllaPl~vG~l~t----------------~~s~~~~~~~i~~~N~~S~~vEy~~l~~VY~~~P~L~~~~~~~~~~  220 (432)
T PF06963_consen  157 IDLFCKLLAPLFVGLLMT----------------FASPVIAAIFIAGWNLASVFVEYFLLARVYNSVPALAVKKRSSESE  220 (432)
T ss_pred             HHHHHHHHHHHHHHHHhh----------------ccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHhcCCCCCcccc
Confidence            777899999999999987                344444445555555544332 2222       2211111111111


Q ss_pred             cchhhhh-hhhhh-----hhhhhccccCCcccccccccchhHHHHHHHHHHHhhhhhHHHHHHHhhcCCcccCccccchh
Q 015847          250 CDVSYDA-LESAS-----AEVKEEEGREATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQ  323 (399)
Q Consensus       250 ~~~~~~~-~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  323 (399)
                      .+...++ .+...     +...+.-......++..++.|-+... +...+.++...++...+..|+.+      .|+++.
T Consensus       221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~Y~~q~vflas-~alalLY~TVLsf~~lmt~yl~~------~G~s~~  293 (432)
T PF06963_consen  221 SSSDEESSSESSSDPSILKRLWNPLRTIIRGWRTYFRQPVFLAS-FALALLYFTVLSFGGLMTAYLKS------QGYSPS  293 (432)
T ss_pred             ccccccccccccchhhHHHHHHHHHHHHhccHHHHHhCHHHHHH-HHHHHHHHHHhcCcHHHHHHHHH------CCCCHH
Confidence            1100000 00000     00001111123345566666655544 44444444455677777778877      599999


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHH
Q 015847          324 MVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLL  368 (399)
Q Consensus       324 ~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  368 (399)
                      ..|.+-+...+.++.+. ++.+++.+|+|..|.-.++.....+++
T Consensus       294 ~igi~R~~gav~Gl~gT-~~~p~l~~riGlvr~G~~~l~~q~~~L  337 (432)
T PF06963_consen  294 VIGIFRGLGAVFGLLGT-WVYPWLMKRIGLVRAGLWSLWWQWVCL  337 (432)
T ss_pred             HHHHHHHHHHHHHHHHH-HHHHHHHHHhcchhhHHHHHHHHHHHH
Confidence            99999999999999998 599999999998888777766555443

It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane

>PRK10429 melibiose:sodium symporter; Provisional

Probab=98.94  E-value=2.5e-09  Score=102.16  Aligned_cols=149  Identities=11%  Similarity=0.047  Sum_probs=105.0

Q ss_pred             hHHHHHHHHHHHhhccccchhhhHHHHHHHhccCccccchhhhhhHHHHHHHHHHHhhhhcccccccccCCchhhHHHHH
Q 015847           41 TELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTA  120 (399)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~  120 (399)
                      +.+..+....++............+++.+...-+...      .+++.+...++.+++.+++++++||+|+|+.+.++..
T Consensus       231 ~~~~~ll~~~~~~~~~~~~~~~~~~y~~~y~~~~~~~------~~~~~~~~~i~~ii~~~~~~~l~~r~gkk~~~~~~~~  304 (473)
T PRK10429        231 DQLSCLLGMALAYNIASNIINGFAIYYFTYVIGDADL------FPYYLSYAGAANLVTLILFPRLVKSLSRRILWAGASI  304 (473)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhheeeEEEEECCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence            3344444444444444444444445454443333444      6677777778889999999999999999999988887


Q ss_pred             HHHHHHHHHhc-----cchHHHHHHHHHHHhhhccchhhH-HHHHhhhcc-------chhhhHHHHHHHHHHHHHHhHHH
Q 015847          121 SVVIFNTLFGL-----SVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFR-------EEHQALGLSTVSTAWGIGLIIGP  187 (399)
Q Consensus       121 ~~~~~~~~~~~-----~~~~~~l~~~r~l~G~~~~~~~~~-~~~~~~~~~-------~~~r~~~~~~~~~~~~~g~~~~p  187 (399)
                      +.+++.+...+     .++.+.+++.-++.|++.+...+. .++++|..+       +++.|..++......-+|..+++
T Consensus       305 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~g~~~~~~~~~~~am~ad~id~~e~~tG~R~~G~~~s~~~~~~K~~~al~~  384 (473)
T PRK10429        305 FPVLSCGVLLLMGLAAPHNALLIVIAGILLNIGTALFWVLQVIMVADTVDYGEYKLGIRCESIAYSVQTMVVKGGSAFAA  384 (473)
T ss_pred             HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHhcCccchhHHHHHHHHHHHHHHHHHH
Confidence            76665544432     345666777778888887776664 889999865       34456688899999999999999


Q ss_pred             HhhhhhcC
Q 015847          188 ALGGFLAQ  195 (399)
Q Consensus       188 ~i~~~l~~  195 (399)
                      .+.|++.+
T Consensus       385 ~i~g~~l~  392 (473)
T PRK10429        385 FFIGVVLG  392 (473)
T ss_pred             HHHHHHHH
Confidence            99999887

>PRK10133 L-fucose transporter; Provisional

Probab=98.92  E-value=9.4e-09  Score=97.04  Aligned_cols=125  Identities=11%  Similarity=0.021  Sum_probs=98.3

Q ss_pred             hhHHHH--HHHhccCccccchhhhhhHHHHHHHHHHHhhhhcccccccccCCchhhHHHHHHHHHHHHHHhccchHHHHH
Q 015847           62 PFLYFM--IKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAV  139 (399)
Q Consensus        62 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~  139 (399)
                      .+.+.+  .+.+|.++.+      .++....+.++..++.++.|++.||+|||+++..+.++.++..++..+.++... +
T Consensus       279 ~~~~~~l~~~~~g~s~~~------ag~~~~~~~~~~~vG~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~-~  351 (438)
T PRK10133        279 SYLIRYAVEEIPGMTAGF------AANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFAGGHVG-L  351 (438)
T ss_pred             HHHHHHHhhhcCCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHcCChHH-H
Confidence            344433  3467999999      999999999999999999999999999999999888877777666655555432 4


Q ss_pred             HHHHHHhhhccchhhH-HHHHhhhccchhhhHHHHHHHHHHHHHHhHHHHhhhhhcC
Q 015847          140 LTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQ  195 (399)
Q Consensus       140 ~~r~l~G~~~~~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~i~~~l~~  195 (399)
                      ..-.+.|++.+...|. .+...|..|+ +.+.+.++... ..+|+.++|.+.|.+.+
T Consensus       352 ~~~~l~glg~~~i~P~~~s~a~~~~~~-~~~~as~l~~~-~~~g~~~~~~i~G~l~~  406 (438)
T PRK10133        352 IALTLCSAFMSIQYPTIFSLGIKNLGQ-DTKYGSSFIVM-TIIGGGIVTPVMGFVSD  406 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcccch-hhccchhHHhH-HhccchHHHHHHHHHHH
Confidence            4567889998888885 8888888775 45677777754 44788899999999987

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=98.91  E-value=1.6e-08  Score=93.84  Aligned_cols=126  Identities=17%  Similarity=0.185  Sum_probs=85.1

Q ss_pred             chhhhHH-HHHHHhccCccccchhhhhhHHHHHHHHHHHhhhhcccccccccCCchhhHHHHHHHHHHHHHHh---c-cc
Q 015847           59 SLFPFLY-FMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFG---L-SV  133 (399)
Q Consensus        59 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~---~-~~  133 (399)
                      ......| .+.+++|.++.+      .++..+...++..++.++.|++.||+|||+.+..+..+..+..+...   . ..
T Consensus       212 ~~~~~~~~~~~~~~g~s~~~------~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  285 (377)
T PRK11102        212 SFLTAGPFVYIELNGVSPQN------FGYYFALNIVFLFVMTIINSRFVRRVGALNMLRFGLWIQFIMGIWLVVSALLDL  285 (377)
T ss_pred             HHHHcCHHHHHHHhCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            3334445 445668999888      99999999999999999999999999999999888766544332221   1 22


Q ss_pred             hHHHHHHHHHHHhhhccchhh-HHHHHhhhccchhhhHHHHHHHH-HHHHHHhHHHHhhh
Q 015847          134 NFWMAVLTRFLLGSLNGLLGP-IKAYACEIFREEHQALGLSTVST-AWGIGLIIGPALGG  191 (399)
Q Consensus       134 ~~~~l~~~r~l~G~~~~~~~~-~~~~~~~~~~~~~r~~~~~~~~~-~~~~g~~~~p~i~~  191 (399)
                      +.+...++-.+.+.+.+.... ....+.|..| ++|+++.+..+. ...+|..+++++++
T Consensus       286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~g~~~g~~~~~  344 (377)
T PRK11102        286 GFWALVVGVAAFVGCVSMISSNAMAVILDEFP-HMAGTASSLAGTLRFGIGAIVGALLSL  344 (377)
T ss_pred             hHHHHHHHHHHHHHHHHHhhHHHHHHHhcccc-ccchHHHHHHHHHHHHHHHHHHHHHHh
Confidence            444444444444444444333 3566777766 789999988754 45577777776654

>PRK09669 putative symporter YagG; Provisional

Probab=98.89  E-value=3.9e-09  Score=100.08  Aligned_cols=112  Identities=19%  Similarity=0.262  Sum_probs=87.5

Q ss_pred             hhHHHHHHHHHHHhhhhcccccccccCCchhhHHHHHHHHHHHHHH-hc-cchHHHHHHHHHHHhhhccchhhH-HHHHh
Q 015847           84 AGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLF-GL-SVNFWMAVLTRFLLGSLNGLLGPI-KAYAC  160 (399)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~-~~-~~~~~~l~~~r~l~G~~~~~~~~~-~~~~~  160 (399)
                      .+.+.....++..++.+++++++||+|+|+.+..+.++.++..+.. .. .++.+.+++..++.|++.+...+. .++++
T Consensus       266 ~~~~~~~~~i~~ii~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~am~a  345 (444)
T PRK09669        266 ATLFLVTGMIAGLFGALLSERLLGKFDRVRAFKWTIVAFVILSALIFFIPPSNVWLIFALNILFNFIQNLTTPLQWSMFS  345 (444)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4455666677788888999999999999999988877665443322 22 356777788888999998887775 89999


Q ss_pred             hhccc-------hhhhHHHHHHHHHHHHHHhHHHHhhhhhcC
Q 015847          161 EIFRE-------EHQALGLSTVSTAWGIGLIIGPALGGFLAQ  195 (399)
Q Consensus       161 ~~~~~-------~~r~~~~~~~~~~~~~g~~~~p~i~~~l~~  195 (399)
                      |..+.       +..|..++.......+|..+|+.++|.+.+
T Consensus       346 d~~d~~e~~~G~r~~g~~~s~~~~~~klg~alg~~i~g~ll~  387 (444)
T PRK09669        346 DVVDYEEKRSGRRLDGLVFSTNLFAIKLGLAIGGAVVGWILA  387 (444)
T ss_pred             hhhhhhhhhcCcCcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            98862       334667788888999999999999999987

>TIGR00788 fbt folate/biopterin transporter

Probab=98.86  E-value=1e-08  Score=97.45  Aligned_cols=156  Identities=10%  Similarity=-0.033  Sum_probs=117.8

Q ss_pred             HHhccCccccchhhhhhHHHHHHHHHHHhhhhcccccccccCCchhhHHHHHHHHHHHHHHhcc----------chHHHH
Q 015847           69 KDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLS----------VNFWMA  138 (399)
Q Consensus        69 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~----------~~~~~l  138 (399)
                      +.+|.++.+      .|.......++..++....+++.+|++.|+++.++.++.+++.+.....          ++.+.+
T Consensus       281 ~~lG~s~~~------~G~~~~~~~v~~i~g~~~~~~~~~~~~~r~~l~~~~~l~~~~~~~~~~l~~~~~~~~gi~~~~~~  354 (468)
T TIGR00788       281 QCLPGGPSF------SGMSKVVGNLGSLCGVGGYDRFLKTFPYRLLFGVTTLLYTLSSLFDLILVKRWNLAFGISDEVFV  354 (468)
T ss_pred             ccCCCCcch------hhhHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHhCceeeeeccccccCCCCeeee
Confidence            568999999      9999999999999999999999999999999999999998887654321          333344


Q ss_pred             HHHHHHHhhhccchhh-HHHHHhhhccchhhhHHHHHHHHHHHHHHhHHHHhhhhhcCCCCCCCCcccccccccCCcchh
Q 015847          139 VLTRFLLGSLNGLLGP-IKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFL  217 (399)
Q Consensus       139 ~~~r~l~G~~~~~~~~-~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~i~~~l~~~~~~~~~~~gw~~~f~~~~~~~  217 (399)
                      ...-++.+++.+.... ...++.+..|++++|+..++.+...++|..+++.+++.+.+.       .|-..-+ ....+.
T Consensus       355 ~~~~~l~~~~~g~~~~~~~~~~~~~~p~~~egt~~al~~s~~~lg~~v~~~~gg~l~~~-------~g~~~~~-~~~~~~  426 (468)
T TIGR00788       355 LGDSIIAEVLAQLKFMPFLVLLARLCPSGCESSVFALLASILHLGSSVSGFLGVLLMET-------IGITCDN-SNNLWL  426 (468)
T ss_pred             eehhHHHHHHHHHHHccHHHHHHHhCCCCceehHHHHHHHHHHHHHHHHHHHHHHHHHH-------cCCCccc-ccchHH
Confidence            5556788887777554 699999999999999999999999999999999999999883       3311111 111122


Q ss_pred             hHHHHHHHHHHHHHHHHhccc
Q 015847          218 PCLCISLFAFGVTIAAFWLPE  238 (399)
Q Consensus       218 ~~~~~~~~~~~~~~~~~~~~e  238 (399)
                      ...+..+..++.+.....+|+
T Consensus       427 ~i~i~~~~~l~~l~~~~llP~  447 (468)
T TIGR00788       427 LILGHSLAPLLPLPLLHLLPR  447 (468)
T ss_pred             HHHHHHHHHHHHHHHHHhCCC
Confidence            234444444555555567886

The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.

>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=98.85  E-value=2.3e-08  Score=93.92  Aligned_cols=174  Identities=13%  Similarity=0.205  Sum_probs=116.0

Q ss_pred             HHHHHHHHHHhhccccchhhhHHHHH-HHhccCccccchhhhhhHHHHHHHHHHHhhhhcccccccccCCc--------h
Q 015847           43 LFSIWIIVLCTALPISSLFPFLYFMI-KDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRK--------P  113 (399)
Q Consensus        43 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~dr~Grr--------~  113 (399)
                      ++.+++..+....+...+...+|.+. +-+|.+..+      .|+..++..+...+..+++|.++||.-+|        |
T Consensus       260 vwai~~~~f~~~~~~~~l~~y~PtY~~~VL~f~v~~------~G~~salP~l~~~~~k~~~g~lsD~l~~~~ls~t~~rk  333 (466)
T KOG2532|consen  260 VWAIWISAFGGNWGFYLLLTYLPTYLKEVLGFDVRE------TGFLSALPFLAMAIVKFVAGQLSDRLTFRILSETTVRK  333 (466)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCCChhh------hhHHHHHHHHHHHHHHHHHHHHHHHHhhccCchHhHHH
Confidence            44677888888888888999999555 568999999      99999999999999999999999987552        2


Q ss_pred             -hhHHHHHHHHHHHHHHhccch-HHHHHHHHHHHhhh-ccchhh-HHHHHhhhccchhhhHHHHHHHHHHHHHHhHHHHh
Q 015847          114 -VIIMGTASVVIFNTLFGLSVN-FWMAVLTRFLLGSL-NGLLGP-IKAYACEIFREEHQALGLSTVSTAWGIGLIIGPAL  189 (399)
Q Consensus       114 -~l~~~~~~~~~~~~~~~~~~~-~~~l~~~r~l~G~~-~~~~~~-~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~i  189 (399)
                       .-.++....++..+..++.++ .....+.-...+.+ .|.... ...-..|. .|+.-+..+|+.+....+.+.++|.+
T Consensus       334 ifn~i~~~~~ai~l~~l~~~~~~~~~~a~~~l~~~~~~~g~~~~Gf~~~~~~~-apq~a~~l~g~~~~~~~~~~~~~P~~  412 (466)
T KOG2532|consen  334 IFNTIAFGGPAVFLLVLAFTSDEHRLLAVILLTIAIGLSGFNISGFYKNHQDI-APQHAGFVMGIINFVGALAGFIAPLL  412 (466)
T ss_pred             HHHhHHHHHHHHHHHeeeecCCCcchHHHHHHHHHHHHcccchhhhHhhhhhc-cchHHHHHHHHHHHHHHHHHHHHHHh
Confidence             224444555555566666542 11111111222222 222222 12233333 45778999999999999999999999


Q ss_pred             hhhhcCCCCCCCCcccccccccCCcchhhHHHHHHHHHHHHHHHHhc
Q 015847          190 GGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWL  236 (399)
Q Consensus       190 ~~~l~~~~~~~~~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (399)
                      .+.+.+. +   ....         |+..|++.+++.++..+...+.
T Consensus       413 vg~~~~~-~---t~~e---------W~~VF~i~a~i~~~~~i~f~~f  446 (466)
T KOG2532|consen  413 VGIIVTD-N---TREE---------WRIVFLIAAGILIVGNIIFLFF  446 (466)
T ss_pred             eeeEeCC-C---CHHH---------HHHHHHHHHHHHHHhchheeEe
Confidence            9999951 1   1233         4555577777766655444333

>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]

Probab=98.82  E-value=7.1e-09  Score=93.46  Aligned_cols=195  Identities=14%  Similarity=0.071  Sum_probs=136.9

Q ss_pred             hHHHHHHHHHHHhhccccchhhhHHHHHHHhccCccccchhh--hhhHHHHH-HHHHHHhhhhcccccccccCCchhhHH
Q 015847           41 TELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGS--YAGYVGSS-FMFGRALTSVFWGLVADRYGRKPVIIM  117 (399)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~-~~~~~~~~~~~~G~l~dr~Grr~~l~~  117 (399)
                      +.++..+..+|+.-+..+..+.....+.+++|..+.+++...  .......+ ...+++.+-.+...+.|++|||++.+.
T Consensus       304 ~~Llgt~~~WFllDiafy~~nL~~s~I~~~ig~~~~~~~~~~~~~vA~~~~iia~~~~vPGyw~tv~~id~iGRk~iq~~  383 (538)
T KOG0252|consen  304 KHLLGTAGTWFLLDIAFYGQNLFQSVIFSAIGVIPSANTYHELFKVAEGNLIIAVCSTVPGYWFTVYFIDIIGRKYIQLM  383 (538)
T ss_pred             HHHHHHHHHHHhhhhhhhccccHHHHHHHhhccCCCcchHHHHHHHHHHHHHHHHHccCCceeEEEEEeehhhhHHHHHh
Confidence            344455667777777777778888888898888776633211  12222222 233444577888999999999999999


Q ss_pred             HHHHHHHHHHHHhccch----HHHHHHHHHHHhhh--ccchhhHHHHHhhhccchhhhHHHHHHHHHHHHHHhHHHHhhh
Q 015847          118 GTASVVIFNTLFGLSVN----FWMAVLTRFLLGSL--NGLLGPIKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGG  191 (399)
Q Consensus       118 ~~~~~~~~~~~~~~~~~----~~~l~~~r~l~G~~--~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~i~~  191 (399)
                      |.+++.+..+..+...|    -..+++...+..+.  .|.......+-+|.+|.+.|++..|+..++.=.|.++|...-.
T Consensus       384 GF~~~~i~~~~~~~~y~~~~~~~Gf~v~y~l~~ff~NFGPn~ttfivpaE~FParvR~t~hGIsAA~GK~GAivg~~~F~  463 (538)
T KOG0252|consen  384 GFFIMTIFFFVIAGPYNQLENTIGFVVLYSLTFFFGNFGPNATTFIVPAEIFPARVRSTCHGISAASGKAGAIVGAFGFL  463 (538)
T ss_pred             hHHHHHHHHHHHcCCcccccccCceeehHHHHHHHHhcCCCceeEEeehhhchHHHhhhhhhHHHHhccchHHHHHHHhh
Confidence            99999999988888765    22233333333332  2233334667799999999999999999999999999998888


Q ss_pred             hhcCCCCCCCCcccccccccCCcchhhHHHHHHHHHHHHHHHHhcccCCCCCCCC
Q 015847          192 FLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDD  246 (399)
Q Consensus       192 ~l~~~~~~~~~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~  246 (399)
                      ++.+..  ++...|.|..+         ++.+.+.++..+..+++||+..+..++
T Consensus       464 ~~t~~~--yp~~~g~~~v~---------~i~~~~~~~gi~~T~l~pEtk~~~lee  507 (538)
T KOG0252|consen  464 YLTDHN--YPPNIGVRNVF---------IILAGCMLLGILFTLLIPETKGKSLEE  507 (538)
T ss_pred             Hhhhcc--CCccccchHHH---------HHHHHHHHHhHheeEEeecccccCHHH
Confidence            887733  44444444444         788888888888888899887665443

>COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only]

Probab=98.80  E-value=2.5e-07  Score=82.64  Aligned_cols=141  Identities=30%  Similarity=0.485  Sum_probs=115.5

Q ss_pred             HHHHhhccccchhhhHHHHHHHhccCc--cccchhhhhhHHHHHHHHHHHhhhhcccccccccCCchhhHHHHHHHHHHH
Q 015847           49 IVLCTALPISSLFPFLYFMIKDFQIAK--REEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFN  126 (399)
Q Consensus        49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~  126 (399)
                      ..+..........+..+.+..+++.+.  ..      .++..+.+.++..++.++.|.++||+|||+.+..+.....++.
T Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~   83 (338)
T COG0477          10 AALLLGLDLGLLSPALPLLLSTLSLSSGRLL------YGLLLSAFFLGYAIGSLLAGPLGDRYGRRKVLIIGLLLFLLGT   83 (338)
T ss_pred             HHHHHHHhcchHHHHHHHHHHHcCCCchhHH------HHHHHHHHHHHHHHHhhhhhhccccccchHHHHHHHHHHHHHH
Confidence            334444666666777888888877666  35      8999999999999999999999999999988888887655666


Q ss_pred             HHHhccch--HHHHHHHHHHHhhhccchhhH-HHHHhhhccc-hhhhHHHHHHHH-HHHHHHhHHHHhhhhhcC
Q 015847          127 TLFGLSVN--FWMAVLTRFLLGSLNGLLGPI-KAYACEIFRE-EHQALGLSTVST-AWGIGLIIGPALGGFLAQ  195 (399)
Q Consensus       127 ~~~~~~~~--~~~l~~~r~l~G~~~~~~~~~-~~~~~~~~~~-~~r~~~~~~~~~-~~~~g~~~~p~i~~~l~~  195 (399)
                      +..++..+  .+.+++.|+..|++.+...+. .+++.|..|+ ++|+...+.... ...+|..++|.+++.+..
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (338)
T COG0477          84 LLLALAPNVGLALLLILRLLQGLGGGGLLPVASALLSEWFPEATERGLAVGLVTLGAGALGLALGPLLAGLLLG  157 (338)
T ss_pred             HHHHhCccchHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            66666665  889999999999998877775 9999999998 789999998877 688899999988888876

>KOG3762 consensus Predicted transporter [General function prediction only]

Probab=98.76  E-value=2.1e-08  Score=92.17  Aligned_cols=141  Identities=22%  Similarity=0.333  Sum_probs=119.9

Q ss_pred             HHHHhhccccchhhhHHHHHHHhccCccccchhhhhhHHHHHHHHHHHhhhhcccccccccCCchhhHHHHHHHHHHHHH
Q 015847           49 IVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTL  128 (399)
Q Consensus        49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~  128 (399)
                      ..++.+.+...+..++--..++.+-.+.-      .|........+-++.-++.+++..|+|+-+++.+++.+..+=.+.
T Consensus       379 ~av~mG~g~~lv~tFLfWHled~~~~~~L------fGv~~a~~~~gEI~~~ffs~klI~kiGHv~v~~lgLa~~~~Rf~~  452 (618)
T KOG3762|consen  379 VAVVMGAGVGLVFTFLFWHLEDLGGIKTL------FGVVSALCHAGEILFYFFSFKLIEKIGHVNVMYLGLACNVGRFLY  452 (618)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhcCCccee------eeehhhhhccchHHHHHHHHHHHHHhcccceeeehhhHHHHHHHH
Confidence            33344444455555554456787766666      788788888888888899999999999999999999999999999


Q ss_pred             HhccchHHHHHHHHHHHhhhccchhh-HHHHHhhhccchhhhHHHHHH-HHHHHHHHhHHHHhhhhhcC
Q 015847          129 FGLSVNFWMAVLTRFLLGSLNGLLGP-IKAYACEIFREEHQALGLSTV-STAWGIGLIIGPALGGFLAQ  195 (399)
Q Consensus       129 ~~~~~~~~~l~~~r~l~G~~~~~~~~-~~~~~~~~~~~~~r~~~~~~~-~~~~~~g~~~~p~i~~~l~~  195 (399)
                      ..+.+|.|+.+-.-+++|+..+.... +.+|++...||+.|.++.++. ....++|-.+|.+++|.+.+
T Consensus       453 ~S~L~n~W~vLPieilqgit~aliWaa~~sY~s~vaPp~l~at~Q~l~~g~f~GlG~g~GslIGG~~v~  521 (618)
T KOG3762|consen  453 YSYLQNPWMVLPIEILQGITHALIWAAIISYASHVAPPGLRATAQGLLQGIFHGLGKGLGSLIGGFVVE  521 (618)
T ss_pred             HHHhcCchheeeHHHHHHHHHHHHHHHHHHHHHhhCCCcchHHHHHHHHHHhcccCcchhhhhhhhhhe
Confidence            99999999999999999999888776 499999999999999999998 66889999999999999998

>TIGR00769 AAA ADP/ATP carrier protein family

Probab=98.76  E-value=3.1e-06  Score=79.34  Aligned_cols=293  Identities=9%  Similarity=0.116  Sum_probs=158.8

Q ss_pred             hhHHHHHHHHHHHhhccccchhhhHHHHHHHhccCc-----cccchhhhhhHHHHHHHHHHHhh-hhcccccccccCCch
Q 015847           40 ITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAK-----REEDIGSYAGYVGSSFMFGRALT-SVFWGLVADRYGRKP  113 (399)
Q Consensus        40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~-~~~~G~l~dr~Grr~  113 (399)
                      .+.++...+..|+..+.++.    +-.+.+.+.++.     +.      +.++-+...+...+. .++.+++++|++|++
T Consensus         6 ~~k~~~~~l~fF~il~~Y~i----LR~lKD~lvv~~~~~gae~------i~fLk~~~~lp~~~~~~~ly~~l~~~~~~~~   75 (472)
T TIGR00769         6 LKKFLPLFLMFFCILFNYTI----LRDTKDTLVVTAKGSGAEI------IPFLKTWVVVPMAVIFMLIYTKLSNILSKEA   75 (472)
T ss_pred             HHHHHHHHHHHHHHHHHHHH----HHhhhhheeecccCCchhh------HHHHHHHHHHHHHHHHHHHHHHHHhcCCHHH
Confidence            34555555556655555443    344555655532     33      777777776665555 889999999999999


Q ss_pred             hhHHHHHHHHHHHHHHhcc-----c--------------------------hHHHHHHHHHHHhhhccchhh-H-HHHHh
Q 015847          114 VIIMGTASVVIFNTLFGLS-----V--------------------------NFWMAVLTRFLLGSLNGLLGP-I-KAYAC  160 (399)
Q Consensus       114 ~l~~~~~~~~~~~~~~~~~-----~--------------------------~~~~l~~~r~l~G~~~~~~~~-~-~~~~~  160 (399)
                      ++-.....+.....++++.     +                          +.|...+..+...+-+..... . +++.+
T Consensus        76 lf~~~~~~F~~~f~lF~~vl~p~~~~~~p~~~~~~~~~~~~~~~~~~i~~~~~W~~~~FYv~~elw~~~vvS~lFW~fan  155 (472)
T TIGR00769        76 LFYTVISPFLGFFALFAFVIYPLSDLLHPTALADKLLSLLPPGFMGFIAILRIWSFALFYVMAELWGSVVLSLLFWGFAN  155 (472)
T ss_pred             hHHHHHHHHHHHHHHHHHHHhcchhhcCCcHHHHHHHhhcchhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9877766666655555442     1                          122333333444443333333 4 89999


Q ss_pred             hhccchhhhHHHHHHHHHHHHHHhHHHHhhhhhcCCCCCCCCcccccccccCCcch--hhHHHHHHHHHHHHHHHHhccc
Q 015847          161 EIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYF--LPCLCISLFAFGVTIAAFWLPE  238 (399)
Q Consensus       161 ~~~~~~~r~~~~~~~~~~~~~g~~~~p~i~~~l~~~~~~~~~~~gw~~~f~~~~~~--~~~~~~~~~~~~~~~~~~~~~e  238 (399)
                      |.++.+|-.|-++++..+.++|..+++.+..++.+.....+...+      .|...  ....+.++..++.+.+..++.+
T Consensus       156 di~t~~qakRfy~l~~~ganlg~i~sg~~~~~~~~~~~~~~~~~~------~~~~~~~~l~~i~~~~~~~~~~~~~~l~~  229 (472)
T TIGR00769       156 QITTIDEAKRFYALFGLGANVALIFSGRTIKYFSKLRASLGPGVD------GWHVSLKNLMVIVICSGLAIILLYWWVNR  229 (472)
T ss_pred             hcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccC------hHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            999999999999999999999999999999888741110000000      11111  1122233333333344444432


Q ss_pred             CCCCCCCCCCccchhhhhhhhhhhhhhhccccCCcccccccccchhHHHHHHHHHHHhhhhhHHHHHHHhhcCCcccCcc
Q 015847          239 TLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGL  318 (399)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (399)
                      ....++...+.++         +++.++.+.......+.++++|.++...+...+++..........-....+.     +
T Consensus       230 ~~~~~~~~~~~~~---------~~~k~k~k~~~~es~k~i~~S~yL~~ia~~vi~y~~~~nlve~~~k~~v~~~-----~  295 (472)
T TIGR00769       230 NVLTDPRSYNPAL---------KEKKVKPKMSTMESLKFLVSSPYILDLALLVIAYGISINLVEVTWKSKLKAQ-----Y  295 (472)
T ss_pred             cccCCccccchhh---------ccccCCCCCCHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----C
Confidence            2211110000000         0000000111223456678899888776666665444433333222222221     1


Q ss_pred             ccchh----hHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHH
Q 015847          319 NYSTQ----MVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLT  364 (399)
Q Consensus       319 g~~~~----~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  364 (399)
                       -+++    -.|.+....++..++.++ +.+++.+|+|-+....+.-++.
T Consensus       296 -p~~~~~~~f~g~~~~~~gi~tl~~~l-~~~~l~~~~Gw~~~a~i~Pii~  343 (472)
T TIGR00769       296 -PSPNEYSAFMGDFSTWTGVVSVTMML-LSGNVIRKYGWLTAALITPLVM  343 (472)
T ss_pred             -CCHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhhHHHHHHHHHHHH
Confidence             2332    244455566666766665 4488999988766555444433

These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.

>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]

Probab=98.74  E-value=4.4e-07  Score=79.89  Aligned_cols=151  Identities=17%  Similarity=0.110  Sum_probs=119.0

Q ss_pred             hHHHHHHHHHHHhhccccchhhhHHHHHHHhccCccccchhhhhhHHHHHHHHHHHhhhhccccccccc-CCchhhHHHH
Q 015847           41 TELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRY-GRKPVIIMGT  119 (399)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~dr~-Grr~~l~~~~  119 (399)
                      +..+.+.+..-+.....+....++|.+..|.|.|..+      .|++.+...+.....++....+.+|. ++|+..+...
T Consensus       208 ~~aW~vtLfmGlqS~~~Y~~~~WLP~ili~~G~sa~~------aG~llsl~~l~~~~~~ll~P~la~R~~n~r~~~~~~~  281 (395)
T COG2807         208 PLAWQVTLFMGLQSLLYYIVIGWLPAILIDRGLSAAE------AGSLLSLMQLAQLPTALLIPLLARRSKNQRPLVVLAL  281 (395)
T ss_pred             chhHHHHHHHHhhHHHHHHHHHHHHHHHHHcCCCHHH------hhhHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHH
Confidence            3445556666667777888899999999999999999      99999999999999999999999965 5777777778


Q ss_pred             HHHHHHHHHHhccchHHHHHHHHHHHhhhccchhh-HHHHHhhhcc-chhhhHHHHHHHHHHHHHHhHHHHhhhhhcCCC
Q 015847          120 ASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGP-IKAYACEIFR-EEHQALGLSTVSTAWGIGLIIGPALGGFLAQPA  197 (399)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~-~~~~~~~~~~-~~~r~~~~~~~~~~~~~g~~~~p~i~~~l~~~~  197 (399)
                      .++.++.+.+.+.+.-..+.- -++.|+|.|...+ +..++.+..+ +++-++..++.+....+=..+||.+.|++-|..
T Consensus       282 ~~~l~G~~G~~~~P~~~~~lw-~~llG~G~G~~F~laL~li~~rs~~a~~Aa~LSgmaQg~GYllAa~GP~l~G~lhDa~  360 (395)
T COG2807         282 LLMLVGLVGLLLAPGQLPILW-ALLLGLGQGGAFPLALTLILLRSSDAAIAAALSGMAQGVGYLLAAFGPWLFGFLHDAT  360 (395)
T ss_pred             HHHHHHHHHHHHhhhhHHHHH-HHHHhCccchHHHHHHHHHHhhcCChHHHHHHHHHhhhhhHHHHhhhhhhHhHHHHhc
Confidence            888888887777664433333 4899999888777 4888888776 455566666667777777789999999999854


Q ss_pred             C
Q 015847          198 E  198 (399)
Q Consensus       198 ~  198 (399)
                      +
T Consensus       361 g  361 (395)
T COG2807         361 G  361 (395)
T ss_pred             C
Confidence            3

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=98.73  E-value=2.5e-08  Score=92.02  Aligned_cols=118  Identities=19%  Similarity=0.147  Sum_probs=84.7

Q ss_pred             cchhhhHHHHH-HHhccCccccchhhhhhHHHHHHHHHHHhhhhcccccccccCCchhhHHHHHHHHHHHHHHhc--cc-
Q 015847           58 SSLFPFLYFMI-KDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGL--SV-  133 (399)
Q Consensus        58 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~--~~-  133 (399)
                      .......|.+. +.+|.++.+      .++..+...++..++.++.|+++||+|||+.+..+......+..+..+  .+ 
T Consensus       242 ~~~~~~~~~~~~~~~g~~~~~------~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~  315 (366)
T TIGR00886       242 LGVSSIFAMFFKDQFGLSKVT------AGAYASLGGLLGSLARPLGGAISDRLGGARKLLMSFLGVAMGAFLVVLGLVSP  315 (366)
T ss_pred             HHHHHHHHHHHHHHcCCcHHH------HHHHHHHHHHHHHHHhhccchHHHhhccchhHHHHHHHHHHHHHHHHhcCCCc
Confidence            34455556454 567998888      999999999999999999999999999998887776666555544433  22 


Q ss_pred             -hHHHHHHHHHHHhhhccchhh-HHHHHhhhccchhhhHHHHHHHHHHHHH
Q 015847          134 -NFWMAVLTRFLLGSLNGLLGP-IKAYACEIFREEHQALGLSTVSTAWGIG  182 (399)
Q Consensus       134 -~~~~l~~~r~l~G~~~~~~~~-~~~~~~~~~~~~~r~~~~~~~~~~~~~g  182 (399)
                       +.+...+...+.++..|.... ..+.+.|..| ++||+++|+.+...++|
T Consensus       316 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~g  365 (366)
T TIGR00886       316 LSLAVFIVLFVALFFFSGAGNGSTFALVPHIFR-RATGAVSGLVGAIGNLG  365 (366)
T ss_pred             chHHHHHHHHHHHHHHhccccchhhhcchhhch-hhcccHHHHHHHhccCC
Confidence             555555555555555555444 4677778776 68999999988877665

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=98.73  E-value=1.3e-07  Score=88.16  Aligned_cols=126  Identities=14%  Similarity=0.070  Sum_probs=91.6

Q ss_pred             hHHHHH-HHhccCccccchhhhhhHHHHHHHHHHHhhhhcccccccccCCchhhHHHH-HHHHHHHHHHhc--cchHHHH
Q 015847           63 FLYFMI-KDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGT-ASVVIFNTLFGL--SVNFWMA  138 (399)
Q Consensus        63 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~-~~~~~~~~~~~~--~~~~~~l  138 (399)
                      ..+.+. +.+|.+..+      .++......++..++.++.+++.||++++....... ....+.......  ..+.+.+
T Consensus       229 ~~~~~~~~~~g~~~~~------~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  302 (394)
T PRK11652        229 CSGVLMGAVLGLSSMT------VSILFILPIPAAFFGAWFAGRPNKRFSTLMWQSVICCLLAGLLMWIPGWFGVMNVWTL  302 (394)
T ss_pred             hChHHHHHHcCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHH
Confidence            334344 448888888      899988889999999999999999998433322222 222222122221  2356667


Q ss_pred             HHHHHHHhhhccchhhH-HHHHhhhccchhhhHHHHHHHHHHHHHHhHHHHhhhhhcC
Q 015847          139 VLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQ  195 (399)
Q Consensus       139 ~~~r~l~G~~~~~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~i~~~l~~  195 (399)
                      ....++.|++.+...|. .++..|.+| +++++..++.+....+|..+++.+++.+.+
T Consensus       303 ~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~lg~~~~~~~~~~~~~  359 (394)
T PRK11652        303 LVPAALFFFGAGMLFPLATSGAMEPFP-YLAGTAGALLGGLQNIGSGLAALLSAMLPQ  359 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhcc-ccchHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence            77788889888887775 888888886 578999999999999999999999998875

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=98.72  E-value=1.3e-07  Score=88.44  Aligned_cols=143  Identities=12%  Similarity=-0.039  Sum_probs=97.5

Q ss_pred             HHHHHHHhhccccchhhhHHHHHHHhccCccccchhhhhhHHHHHHHHHHHhhhhcccccccccCCchhhHHHHHHHHHH
Q 015847           46 IWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIF  125 (399)
Q Consensus        46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~  125 (399)
                      ..+..++...........++.+.++.+...+...    .+...+.+..+..++.++.+++.||+++|+++.++.++.++.
T Consensus       237 ~~l~~f~yvg~e~~~~s~l~~y~~~~~~~~~~~~----a~~~~~~~~~~~~vGR~~~~~l~~r~~~~~~l~i~~~~~~~~  312 (410)
T TIGR00885       237 GVIAQFFYVGVQIMCWTFIIQYAVRLIPGMTAGF----AANYNIGAMVIFFISRFIGTWLISYLAAHKVLMAYAIIGMAL  312 (410)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhccCCCCHHH----HHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHH
Confidence            3333444333333445566666555432222211    444566666777889999999999999999999998888888


Q ss_pred             HHHHhccchHHHHHHHHHHHhhhccchhhH-HHHHhhhccchhhhHHHHHHHHHHHHHHhHHHHhhhhhcC
Q 015847          126 NTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQ  195 (399)
Q Consensus       126 ~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~i~~~l~~  195 (399)
                      +++..+.++... ..+-++.|++.+...|. .+...+..+++.+....++...  .+|+++.|.+.|++.|
T Consensus       313 ~ll~~~~~~~~~-~~~l~~~glf~s~~fp~i~sl~~~~~g~~~~~~s~~l~~~--~~Gga~~p~l~G~~~d  380 (410)
T TIGR00885       313 CLGSIFAGGHVG-LYCLTLCSAFMSLMFPTIYGIALKGLGQDTKYGAAGLVMA--IIGGGIVPPLQGFIID  380 (410)
T ss_pred             HHHHHHcCChHH-HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHH--HhccchHHHHHHHHHH
Confidence            888888776554 45556677766665574 9999999987665434444333  3999999999999998

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters

Probab=98.71  E-value=1.2e-10  Score=110.62  Aligned_cols=165  Identities=19%  Similarity=0.249  Sum_probs=103.3

Q ss_pred             cccchhhhHHHHHHHhccCccccchhhhhhHHHHHHHHHHHhhhhcccccccccCCchhhHHHHHHHHHHHHHHh--c--
Q 015847           56 PISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFG--L--  131 (399)
Q Consensus        56 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~--~--  131 (399)
                      +......+.+.+.++.+.+... .    ...   ...+...++.+....+.||+|||++++.+..+.+++.+..+  .  
T Consensus       268 g~~~~~~~~~~i~~~~~~~~~~-~----~~~---~~~~~~~~~~~~~~~~~~~~GRr~~~i~~~~~~~~~~~~~~~~~~~  339 (451)
T PF00083_consen  268 GINFIFYYSPSIFENAGISNSF-L----ATL---ILGLVNFLGTLLAIFLIDRFGRRKLLIIGLLLMAICSLILGIIFFL  339 (451)
T ss_pred             cccccccccccccccccccccc-c----ccc---cccccccccccccccccccccccccccccccccccccccccccccc
Confidence            3344445556676777766652 0    222   22344456677777999999999999999988887777664  1  


Q ss_pred             -cch-----HHHHHHHHHHHhhh-ccchhh-HHHHHhhhccchhhhHHHHHHHHHHHHHHhHHHHhhhhhcCCCCCCCCc
Q 015847          132 -SVN-----FWMAVLTRFLLGSL-NGLLGP-IKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNL  203 (399)
Q Consensus       132 -~~~-----~~~l~~~r~l~G~~-~~~~~~-~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~i~~~l~~~~~~~~~~  203 (399)
                       .++     ...+. .-.+.... .....+ ...+.+|.+|.+.|+++.++......++..++|.+...+.+.       
T Consensus       340 ~~~~~~~~~~~~i~-~~~l~~~~~~~g~~~~~~~~~~ElfPt~~R~~~~~~~~~~~~i~~~i~~~~~~~~~~~-------  411 (451)
T PF00083_consen  340 GVSSSSWWSILSIV-FLALFFAFFSLGWGPLPWIYTAELFPTKVRSTGIGLSYAVGRIGGFIIPFLFPYLFNN-------  411 (451)
T ss_pred             ccccccccccccce-eeeecccccccccccccccccccccccccccccccccccccccccccccccccccccc-------
Confidence             121     12222 22222222 212334 478889999999999999999888889999998888777762       


Q ss_pred             ccccccccCCcchhhHHHHHHHHHHHHHHHHhcccCCCCCC
Q 015847          204 FSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHN  244 (399)
Q Consensus       204 ~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~  244 (399)
                      .+        .+.......++..+..++..+++||+..+..
T Consensus       412 ~~--------~~~~~~i~~~~~~i~~i~~~~~lpET~g~~l  444 (451)
T PF00083_consen  412 LG--------GWGVFLIFAGVCLIAIIFVYFFLPETKGKTL  444 (451)
T ss_pred             cc--------ccccchhhHHHHHHHHhheeEEEeeCCCCCH
Confidence            11        0112223333344445566788999876543

Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane

>PRK11462 putative transporter; Provisional

Probab=98.63  E-value=2.7e-07  Score=87.71  Aligned_cols=141  Identities=12%  Similarity=0.152  Sum_probs=89.3

Q ss_pred             HHHHhhccccchhhhHHHHHHHhccCccccchhhhhhHHHHHHHHHHHhhhhcccccccccCCchhhHHHHHHHHHHHHH
Q 015847           49 IVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTL  128 (399)
Q Consensus        49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~  128 (399)
                      ..++.............++.+...-++..      .+.+...+.++.+++.+++++++||+|+|+.+..+..+.++..++
T Consensus       236 ~~~~~~~~~~~~~~~~~y~~~y~~g~~~~------~~~~l~~~~i~~iig~~l~~~l~~r~gkk~~~~~~~~~~~~~~~~  309 (460)
T PRK11462        236 LTIFNILAVCVRGGAMMYYVTWILGTPEV------FVAFLTTYCVGNLIGSALAKPLTDWKCKVTIFWWTNALLAVISLA  309 (460)
T ss_pred             HHHHHHHHHHHHHhHhhhhhhhhcCChHH------HHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHH
Confidence            33334443333344444444443323333      566777888888999999999999999999877555544443333


Q ss_pred             Hhcc-c-hHHHHHHHHHHHhhhccchhhH-HHHHhhhcc-------chhhhHHHHHHHHHHHHHHhHHHHhhhhhcC
Q 015847          129 FGLS-V-NFWMAVLTRFLLGSLNGLLGPI-KAYACEIFR-------EEHQALGLSTVSTAWGIGLIIGPALGGFLAQ  195 (399)
Q Consensus       129 ~~~~-~-~~~~l~~~r~l~G~~~~~~~~~-~~~~~~~~~-------~~~r~~~~~~~~~~~~~g~~~~p~i~~~l~~  195 (399)
                      ..+. . +...+++.-++.|++.+...+. .++++|..+       +++.|..++......-+|..+++.++|.+.+
T Consensus       310 ~~~~~~~~~~~~~~~~~l~g~~~~~~~~l~~~m~ad~~d~~e~~tG~r~~g~~~a~~~f~~Klg~alg~~i~g~iL~  386 (460)
T PRK11462        310 MFFVPMQASITMFVFIFVIGVLHQLVTPIQWVMMSDTVDYGEWCNGKRLTGISFAGTLFVLKLGLAFGGALIGWMLA  386 (460)
T ss_pred             HHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3232 2 2333444456667766665554 777777766       3334555677778888999999999998886

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=98.61  E-value=9.3e-07  Score=84.42  Aligned_cols=112  Identities=15%  Similarity=0.098  Sum_probs=91.8

Q ss_pred             hhHHHHHHHHHHHhhhhccc----ccccc-cCCchhh--HHHHHHHHHHHHHHhc---------cchHHHHHHHHHHHhh
Q 015847           84 AGYVGSSFMFGRALTSVFWG----LVADR-YGRKPVI--IMGTASVVIFNTLFGL---------SVNFWMAVLTRFLLGS  147 (399)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~G----~l~dr-~Grr~~l--~~~~~~~~~~~~~~~~---------~~~~~~l~~~r~l~G~  147 (399)
                      .+++.+...+...+.+++..    ++.|| .+.+...  .+|.++.+++.+..++         ..|+++++...++.++
T Consensus       314 ~~~~~~~n~~~iil~~p~~~~~~~~l~~~~~~~~~~~k~~~G~~l~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~~~~~  393 (475)
T TIGR00924       314 VIWFQSLNPFWVVVGSPVLAMIWTRLGRKGKDPTTPLKFTLGMLFCGASFLTFAASIWFADAGGLTSPWFMVLIYLFQTL  393 (475)
T ss_pred             HHHHHhhhHHHHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHHH
Confidence            67888888888888887755    45554 3334433  7788888888777664         4689999999999999


Q ss_pred             hccchhhH-HHHHhhhccchhhhHHHHHHHHHHHHHHhHHHHhhhhhcC
Q 015847          148 LNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQ  195 (399)
Q Consensus       148 ~~~~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~i~~~l~~  195 (399)
                      |.....|. .++++|..|++.||+.+|++.....+|..+++.+.....+
T Consensus       394 ge~~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~l~~~~~~~~~~  442 (475)
T TIGR00924       394 GELMISPLGLSWWTKIAPQRLMGQMLGMWFLAQAMGSLLGGYLATFGAV  442 (475)
T ss_pred             HHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            99998886 9999999999999999999999999999999999887765

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>KOG3098 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.61  E-value=5.1e-06  Score=76.98  Aligned_cols=107  Identities=19%  Similarity=0.108  Sum_probs=91.0

Q ss_pred             HHHHHHHHHhhhhcccccccccCCchhhHHHHHHHHHHHHHHhccchHHHHHHHHHHHhhhccchhhH-HHHHhhhccch
Q 015847           88 GSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREE  166 (399)
Q Consensus        88 ~~~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~-~~~~~~~~~~~  166 (399)
                      .++.+....+.+++.+.+.|+.|.|+.++++........+.+-+ .|-+.++++-.+.|+|.+..... ..+++|..+++
T Consensus        56 ~aiiY~~ftv~~l~~psiv~~i~~K~~lv~ga~~y~~f~~gfl~-~N~y~~yfssallG~Gaallw~GqG~ylt~~st~~  134 (461)
T KOG3098|consen   56 QAIIYAFFTVSCLFAPSIVNFLGPKWALVIGATCYAAFPLGFLF-PNSYYLYFSSALLGFGAALLWTGQGGYLTSNSTRE  134 (461)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHhhHHHHHHHHhHHHHHHHHHHHh-cchHHHHHHHHHhhhhHHheecccceehhhcCChh
Confidence            67778888899999999999999999999999998887776644 55777888999999999998885 99999999999


Q ss_pred             hhhHHHHHHHHHHHHHHhHHHHhhhhhcC
Q 015847          167 HQALGLSTVSTAWGIGLIIGPALGGFLAQ  195 (399)
Q Consensus       167 ~r~~~~~~~~~~~~~g~~~~p~i~~~l~~  195 (399)
                      .+.+..++.-+....+..+|..+...+..
T Consensus       135 tie~Nisi~Wai~~~~li~Ggi~l~~~~~  163 (461)
T KOG3098|consen  135 TIERNISIFWAIGQSSLIIGGIILFIYFQ  163 (461)
T ss_pred             hHHHHHHHHHHHHHHHHHhhhHhheeeeE
Confidence            99999999888888888887666555443

>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]

Probab=98.58  E-value=2.3e-07  Score=85.75  Aligned_cols=149  Identities=12%  Similarity=0.207  Sum_probs=112.0

Q ss_pred             hHHHHHHHHHHHhhccccchhhhHHHHHH-HhccCccccchhhhhhHHHHHHHHHHHhhhhcccccccccCCchhhHHHH
Q 015847           41 TELFSIWIIVLCTALPISSLFPFLYFMIK-DFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGT  119 (399)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~  119 (399)
                      +.+..+++..++.....+.......++.+ -+|.++..      ..+.......+.+++.+++.++++|+|+|+++.++.
T Consensus       236 rp~~~~l~~~l~~~~~~~i~~s~~~yy~~y~lg~~~l~------~~~~~~~~~~~~l~~~~~~p~L~~~~gkk~~~~~~~  309 (467)
T COG2211         236 RPLLLLLLMNLLLFIAFNIRGSIMVYYVTYVLGDPELF------AYLLLLASGAGLLIGLILWPRLVKKFGKKKLFLIGL  309 (467)
T ss_pred             chHHHHHHHHHHHHHHHHHHhhhhheeEEEEcCChHHH------HHHHHHHHHHHHHHHHHhHHHHHHHhchHHHHHHHH
Confidence            34444555555556666666666655543 23444444      667777777777788999999999999999999999


Q ss_pred             HHHHHHHHHHhccc--hHHHHHHHHHHHhhhccchhhH-HHHHhhhcc-------chhhhHHHHHHHHHHHHHHhHHHHh
Q 015847          120 ASVVIFNTLFGLSV--NFWMAVLTRFLLGSLNGLLGPI-KAYACEIFR-------EEHQALGLSTVSTAWGIGLIIGPAL  189 (399)
Q Consensus       120 ~~~~~~~~~~~~~~--~~~~l~~~r~l~G~~~~~~~~~-~~~~~~~~~-------~~~r~~~~~~~~~~~~~g~~~~p~i  189 (399)
                      ++.+++.++..+.+  +.+.+++..++.+++.+...+. .++++|..+       .+.-|...+......=+|.+++..+
T Consensus       310 ~~~~i~~~~~~f~~~~~~~l~~~~~~i~~~g~~~~~~l~wam~~d~vDyge~~TG~R~eGi~~s~~tF~~K~g~ala~~~  389 (467)
T COG2211         310 LLLAVGYLLLYFTPAGSVVLIVVALIIAGVGTGIANPLPWAMVADTVDYGEWKTGVRREGIVYSGMTFFRKLGLALAGFI  389 (467)
T ss_pred             HHHHHHHHHHHhhcCcchHHHHHHHHHHHHHhhccccccHHHhcchhhHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHH
Confidence            99999998888765  7888888889999998887775 888888764       2334667777777777888888888


Q ss_pred             hhhhcC
Q 015847          190 GGFLAQ  195 (399)
Q Consensus       190 ~~~l~~  195 (399)
                      .|+..+
T Consensus       390 ~g~~L~  395 (467)
T COG2211         390 PGWILG  395 (467)
T ss_pred             HHHHHH
Confidence            888876

>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.53  E-value=1.8e-07  Score=83.15  Aligned_cols=160  Identities=18%  Similarity=0.193  Sum_probs=116.1

Q ss_pred             HHhhccccchhhhHHHH-HHHhccCccccchhhhhhHHHHHHHHHHHhhhhcccccccccC--CchhhHHHHHHHHHHHH
Q 015847           51 LCTALPISSLFPFLYFM-IKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYG--RKPVIIMGTASVVIFNT  127 (399)
Q Consensus        51 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~dr~G--rr~~l~~~~~~~~~~~~  127 (399)
                      ...+......-|.++.+ .+.+..+..+      .|...--..+.+.++..+.|.++||++  |......+.+.....+.
T Consensus       280 ~~~n~~lafLePtlslwm~e~m~~p~w~------~G~~fLp~~~~y~ig~~lfg~la~k~~~~~wl~~~~gl~~~G~~~~  353 (464)
T KOG3764|consen  280 TFSNSSLAFLEPTLSLWMLETMFTPGWE------VGLAFLPASLSYAIGTNLFGKLADKYPHLRWLLSLGGLATVGVSSG  353 (464)
T ss_pred             hhccchHHHhCcccHHHHHHhccCCCcc------eeeeecccccchhccCchHHHHHHhcCchhHHHHHHHHHHHHHHhc
Confidence            33445556667777754 4666655556      888888888999999999999999999  54444555556666667


Q ss_pred             HHhccchHHHHHHHHHHHhhhccchhh----HHHHHhhhccch---hhhHHHHHHHHHHHHHHhHHHHhhhhhcCCCCCC
Q 015847          128 LFGLSVNFWMAVLTRFLLGSLNGLLGP----IKAYACEIFREE---HQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKY  200 (399)
Q Consensus       128 ~~~~~~~~~~l~~~r~l~G~~~~~~~~----~~~~~~~~~~~~---~r~~~~~~~~~~~~~g~~~~p~i~~~l~~~~~~~  200 (399)
                      ...+++++.++.+-++..+++.+....    ...++-|.-..+   .-|...++...++.+|..+||.++|.+.+     
T Consensus       354 ~iP~~~~~~~L~vp~~~l~~~i~~~dasl~P~l~~lvd~rh~s~~~vYGsVyaIad~a~sla~a~GP~~gg~iv~-----  428 (464)
T KOG3764|consen  354 PIPFATSIAQLWVPNFGLGFGIGLADASLIPTLGYLVDPRHVSGFNVYGSVYAIADAAFSLAYAIGPTFGGSLVE-----  428 (464)
T ss_pred             hhHhhhhHHHHhhhhHHHHHHHHHHHHHHhhhhHHhcchhhccccceeeeHHHHHHHHHHHhhhccccccchhee-----
Confidence            777899999999988888887665443    333444433333   55788999999999999999999999998     


Q ss_pred             CCcccccccccCCcchhhHHHHHHHHHHHHHH
Q 015847          201 PNLFSSESLFGKFPYFLPCLCISLFAFGVTIA  232 (399)
Q Consensus       201 ~~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~  232 (399)
                                 ++++.+...+.++..++-...
T Consensus       429 -----------~iGF~wl~~iig~~n~iyapv  449 (464)
T KOG3764|consen  429 -----------AIGFEWLMTIIGILNLIYAPV  449 (464)
T ss_pred             -----------ehhHHHHHHHHHHHHHHHHHH
Confidence                       555665556666666654433

>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans

Probab=98.51  E-value=2e-06  Score=67.92  Aligned_cols=109  Identities=21%  Similarity=0.208  Sum_probs=90.9

Q ss_pred             HHHHHHHHHHHhhhhcccccccccCCchhhHHHHHHHHHHHHHHhccchHHHHHHHHHHHhhhccchhhH-HHHHhhhcc
Q 015847           86 YVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFR  164 (399)
Q Consensus        86 ~~~~~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~-~~~~~~~~~  164 (399)
                      .-.++......+.+++.+.+.+++|.|+.+++|.+...+-.... +-++.+.++.+-++.|++.+...++ ..++.+..+
T Consensus        41 ~slai~Y~~~~~s~l~~P~iv~~lg~K~sm~lg~~~y~~y~~~~-~~~~~~~l~~~s~l~G~~~a~lW~aqg~ylt~~s~  119 (156)
T PF05978_consen   41 YSLAILYGSFAISCLFAPSIVNKLGPKWSMILGSLGYAIYIASF-FYPNSYTLYPASALLGFGAALLWTAQGTYLTSYST  119 (156)
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHH-HhhhHHHHHHHHHHHhhhhHHhhHhhhHHHHHcCC
Confidence            34455666667788888899999999999999999988665554 4567888999999999999998886 889999999


Q ss_pred             chhhhHHHHHHHHHHHHHHhHHHHhhhhhcC
Q 015847          165 EEHQALGLSTVSTAWGIGLIIGPALGGFLAQ  195 (399)
Q Consensus       165 ~~~r~~~~~~~~~~~~~g~~~~p~i~~~l~~  195 (399)
                      +++|++..+++-.....+.++|.++..++..
T Consensus       120 ~~~~~~~~~ifw~i~~~s~i~G~~~~~~~~~  150 (156)
T PF05978_consen  120 EETIGRNTGIFWAIFQSSLIFGNLFLFFIFQ  150 (156)
T ss_pred             HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            9999999999988888888888877765543

UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein [].

>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon

Probab=98.50  E-value=1.2e-06  Score=78.99  Aligned_cols=136  Identities=21%  Similarity=0.166  Sum_probs=113.1

Q ss_pred             hccccchhhhHHHH-HHHhccCccccchhhhhhHHHHHHHHHHHhhhhccccccc-ccCCchhhHHHHHHHHHHHHHHh-
Q 015847           54 ALPISSLFPFLYFM-IKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVAD-RYGRKPVIIMGTASVVIFNTLFG-  130 (399)
Q Consensus        54 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~d-r~Grr~~l~~~~~~~~~~~~~~~-  130 (399)
                      .+...+...++.++ .+-||.+..+      ...++.....+..++....|++.. |.++|+.-.+|+...+++..+.. 
T Consensus       221 t~a~~~QD~iLEPygg~Vfgmsv~e------TT~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~a~~G~~~~~~~f~lii~  294 (403)
T PF03209_consen  221 TLAFFMQDVILEPYGGEVFGMSVGE------TTRLTAFWGGGTLLGMLLAGFLLSRRLGKKRTAALGCLLGALAFALIIL  294 (403)
T ss_pred             HHHHHhhHHHcCCchhHHcCCCHHH------HHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHH
Confidence            33444455566444 4679999999      889999999999999999998777 67888888888887777665543 


Q ss_pred             --ccchHHHHHHHHHHHhhhccchhhH-HHHHhhhccchhhhHHHHHHHHHHHHHHhHHHHhhhhhcC
Q 015847          131 --LSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQ  195 (399)
Q Consensus       131 --~~~~~~~l~~~r~l~G~~~~~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~i~~~l~~  195 (399)
                        ...+.+.+...-++.|++.|.+.+. .+.+.|...+++.|..+|.+.....++..+|..++|.+.|
T Consensus       295 a~~~~~~~~~~~~~~l~G~g~G~f~vgals~mM~lt~~~~aG~~mG~WGaaQA~A~Glg~~~GG~~~D  362 (403)
T PF03209_consen  295 AGPLGSPWLFRPGVFLLGLGNGLFTVGALSLMMDLTSAGRAGLFMGAWGAAQAIARGLGTFLGGALRD  362 (403)
T ss_pred             HHhcccchHHHHHHHHHHHhhhHHHHHHHHHHHhCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence              4567888999999999999999885 9999999999999999999999999999999999999987

It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.

>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]

Probab=98.48  E-value=7.3e-07  Score=79.69  Aligned_cols=147  Identities=16%  Similarity=0.131  Sum_probs=118.4

Q ss_pred             hhHHHHHHHHHHHhhccccchhhhHHHHHHH-hccCccccchhhhhhHHHHHHHHHHHhhhhcccccccccCCchhhHHH
Q 015847           40 ITELFSIWIIVLCTALPISSLFPFLYFMIKD-FQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMG  118 (399)
Q Consensus        40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~dr~Grr~~l~~~  118 (399)
                      .+++..-.++.|+..........+++.+.+| .|.++.+      .....+.+..+..+|.++.-++..|+...|.+.+.
T Consensus       235 ~~~~~~gvl~~FlYVG~Eva~gsfl~~y~~~~~g~~~~~------aa~~~s~~~~~~~vGRFig~~lm~~~~~~k~Laf~  308 (422)
T COG0738         235 NKHLRLGVLAIFLYVGAEVAIGSFLVSYLEELLGLNEQQ------AAYYLSFFWVGFMVGRFIGSALMSRIKPEKYLAFY  308 (422)
T ss_pred             ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCccHHH------HHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHH
Confidence            3455556666777666677778888877766 7888888      88999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhccchHHHHHHHHHHHhhhccchhhH-HHHHhhhccchhhhHHHHHHHHHHHHHHhHHHHhhhhhcC
Q 015847          119 TASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQ  195 (399)
Q Consensus       119 ~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~i~~~l~~  195 (399)
                      .++..+.++..++.++...++ +-++.|+..+...|. .+...+..|+  .....|..-.+..+|+++-|.+.|++.|
T Consensus       309 a~~~ill~~~~~l~~g~v~~~-~l~~ig~F~simfPTIfslal~~l~~--~ts~~s~~l~maivGGAiiP~l~G~i~d  383 (422)
T COG0738         309 ALIAILLLLAVALIGGVVALY-ALFLIGLFNSIMFPTIFSLALKNLGE--HTSVGSGLLVMAIVGGAIIPPLQGVIAD  383 (422)
T ss_pred             HHHHHHHHHHHHHhcChHHHH-HHHHHHHHhHHHHHHHHHHHHhccCc--cccccceeeeeheecchHHHHHHHHHHH
Confidence            999999999999999866554 346778888887774 9998999883  3344455566677999999999999998

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=98.47  E-value=1.8e-06  Score=81.07  Aligned_cols=147  Identities=8%  Similarity=0.006  Sum_probs=89.9

Q ss_pred             HHHHHHHHHHHhhccccchhhhHHHHH-HHhccCccccchhhhhhHHHHHHHHHHHhhhhcccccccccCCchhhHHHHH
Q 015847           42 ELFSIWIIVLCTALPISSLFPFLYFMI-KDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTA  120 (399)
Q Consensus        42 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~  120 (399)
                      .++...+...+............|.+. +.+|.+..+      .++.......+..+++.+.+.+.+|.++++.......
T Consensus       219 ~~~~~~l~~~~~~~~~~~~~~~~P~~l~~~~g~s~~~------~gl~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~  292 (413)
T PRK15403        219 LFLTGAATLSLSYIPMMSWVAVSPVILIDAGGMTTSQ------FAWTQVPVFGAVIVANAIVARFVKDPTEPRFIWRAVP  292 (413)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhChHHHHHhcCCCHHH------HHHHHHHHHHHHHHHHHHHHHHhccCCchhHHHHHHH
Confidence            333333333333333344445567555 456899988      8998888888888888888887655444444332222


Q ss_pred             HHHHHHHHHh-----ccchHHHHHHHHHHHhhhccchhhH-HHHHhhhccchhhhHHHHHHHHHHHHHHhHHHHhhhhhc
Q 015847          121 SVVIFNTLFG-----LSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLA  194 (399)
Q Consensus       121 ~~~~~~~~~~-----~~~~~~~l~~~r~l~G~~~~~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~i~~~l~  194 (399)
                      +..++.++..     ..++++..++..++.++|.+...|. .+. +..-.+..+|++.++.+.....+...++.+++++.
T Consensus       293 ~~~ig~~l~~~~~~~~~~~~~~~~~~~~l~~~G~~~~~p~~~~~-al~~~~~~~G~a~a~~~~~~~~~~~~~~~~~g~~~  371 (413)
T PRK15403        293 IQLVGLALLIVGNLLWPHVWLWSVLGTSLYAFGIGLIFPTLFRF-TLFSNNLPKGTVSASLNMVILMVMAVSVEIGRWLW  371 (413)
T ss_pred             HHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHhHHHHHH-HhccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            2222222221     2234444566777888887776664 432 22222334789999998888888899999999887


Q ss_pred             C
Q 015847          195 Q  195 (399)
Q Consensus       195 ~  195 (399)
                      +
T Consensus       372 ~  372 (413)
T PRK15403        372 F  372 (413)
T ss_pred             H
Confidence            5

>PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters

Probab=98.47  E-value=2.6e-07  Score=63.92  Aligned_cols=80  Identities=16%  Similarity=0.278  Sum_probs=73.6

Q ss_pred             hhccccchhhhHHHHHHHhccCccccchhhhhhHHHHHHHHHHHhhhhcccccccccCCchhhHHHHHHHHHHHHHHhcc
Q 015847           53 TALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLS  132 (399)
Q Consensus        53 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~  132 (399)
                      .++++..+.|.+|.+++|.++|.++      .|++.+..++|+.+|.+...++.++..+++.+..+.+...+..+.+++.
T Consensus         4 mGigRFayTplLP~M~~~~~ls~~~------ag~lasaNy~GYL~GAl~~~~~~~~~~~~~~~~~~l~~~~~~~~~ma~~   77 (85)
T PF06779_consen    4 MGIGRFAYTPLLPLMQADGGLSLSQ------AGWLASANYLGYLVGALLASRLPRHSRPRRLLRAGLLLTVLSTAAMALT   77 (85)
T ss_pred             hhhHHHHHHhHhHHHHHhcCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHH
Confidence            3566778899999999999999999      9999999999999999999999999888999999999999999999998


Q ss_pred             chHHHH
Q 015847          133 VNFWMA  138 (399)
Q Consensus       133 ~~~~~l  138 (399)
                      ++++.+
T Consensus        78 ~~~~~w   83 (85)
T PF06779_consen   78 HSFWLW   83 (85)
T ss_pred             hchHHH
Confidence            887764

Note that many members are hypothetical proteins.

>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age

Probab=98.41  E-value=0.00011  Score=67.12  Aligned_cols=136  Identities=17%  Similarity=0.103  Sum_probs=93.0

Q ss_pred             hhHHHHHHHHHHHhhhhcccccccccCCchhhHHHHHHHHHHHHHHhccchHHHHHHHHHHHhhhccchhhH-HHHHhhh
Q 015847           84 AGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEI  162 (399)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~-~~~~~~~  162 (399)
                      .+.+.-+-.+...+..+.+.++.+|+..+.=.....++++++.++.+++++.+.-+++-++.+++.|..-.. ..+ +..
T Consensus        61 t~~Vlladi~P~l~~Kl~aP~fi~~v~y~~Ri~~~~~l~~~g~l~va~~~~v~~~l~Gv~las~ssg~GE~tfL~l-t~~  139 (402)
T PF02487_consen   61 TGAVLLADILPSLLVKLIAPFFIHRVPYWIRILICVALSAAGMLLVAFSPSVWVRLLGVVLASLSSGLGEVTFLSL-THF  139 (402)
T ss_pred             chHHHHHHHHHHHHHHHHhHhhhhhccchHHHHHHHHHHHHHHhheeeccchhHHHHHHHHHhhhhhhhHHHHHHH-HHh
Confidence            455666666677777788888899998665556677788889999999999998888888888887776554 454 445


Q ss_pred             ccchhhhHHHHHHHHHHHHHHhHHHHhhhhhcCCCCCCCCcccccccccCCcchhhHHHHHHHHHHHHHH-HHhcccC
Q 015847          163 FREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIA-AFWLPET  239 (399)
Q Consensus       163 ~~~~~r~~~~~~~~~~~~~g~~~~p~i~~~l~~~~~~~~~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~-~~~~~e~  239 (399)
                      +++    ...+-+..+.+.++++|+..-..+.+ .              ....+........+.++..+. ++.+|++
T Consensus       140 y~~----~~l~~wssGTG~aGl~Ga~~y~~lT~-~--------------g~s~~~tll~~~~lp~~~~~~~f~~L~~~  198 (402)
T PF02487_consen  140 YGK----SSLSAWSSGTGGAGLVGALYYLGLTT-L--------------GLSPRTTLLIMLVLPAIFLLSYFFLLPSP  198 (402)
T ss_pred             cCc----cccccccCCcChhhHHHHHHHHHHHH-h--------------CcCHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence            554    35677888888888888877655553 1              334454455555555444444 3344543

The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=98.40  E-value=2.8e-06  Score=81.61  Aligned_cols=109  Identities=8%  Similarity=-0.035  Sum_probs=87.7

Q ss_pred             hhHHHHHHHHHHHhhhhcc----cccccccCCchhhHHHHHHHHHHHHHHhccch---------HHHHHHHHHHHhhhcc
Q 015847           84 AGYVGSSFMFGRALTSVFW----GLVADRYGRKPVIIMGTASVVIFNTLFGLSVN---------FWMAVLTRFLLGSLNG  150 (399)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~----G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~---------~~~l~~~r~l~G~~~~  150 (399)
                      .+++.+...+...+..++.    +++.||++.++.+.+|.++.+++.+..+...+         .++++..+++.|+|.+
T Consensus       318 ~~~~~s~n~i~iil~~p~~~~~~~~l~~r~~~~~~~~~G~~l~~l~f~~l~~~~~~~~~~~~vs~~~~~~~~~l~~~ge~  397 (500)
T PRK09584        318 PEQYQALNPFWIMIGSPILAAIYNKMGDRLPMPHKFAIGMVLCSGAFLVLPLGAKFANDAGIVSVNWLIASYGLQSIGEL  397 (500)
T ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHHhCcCCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHHHH
Confidence            5666777776666666655    77777777778889999999999888766544         5678889999999999


Q ss_pred             chhhH-HHHHhhhccchhhhHHHHHHHHHHHHHHhHHHHhhhh
Q 015847          151 LLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGF  192 (399)
Q Consensus       151 ~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~i~~~  192 (399)
                      ...|. .+++.+..|++.||+.+|.+.....+|..++..+...
T Consensus       398 ~~~p~g~s~~~~~aP~~~rg~~~g~~~l~~a~g~~~~g~~~~~  440 (500)
T PRK09584        398 MISGLGLAMVAQLVPQRLMGFIMGSWFLTTAGAALIAGYVANL  440 (500)
T ss_pred             HHhHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99996 9999999999999999998887777777777666653

>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]

Probab=98.39  E-value=6.6e-06  Score=79.55  Aligned_cols=181  Identities=14%  Similarity=0.148  Sum_probs=109.5

Q ss_pred             HHHHHHHHHHHhhccccchhhhHHHHHHHhccCccccchhhhhhHHHHHHHHHHHhhhhcccccccccCCchhhHHHHHH
Q 015847           42 ELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTAS  121 (399)
Q Consensus        42 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~  121 (399)
                      ....+.+..+....+.+....+.+.+.+..|.+.+.       .+...+..+...++..+...+.||+|||+.++.+...
T Consensus       296 ~~i~~~l~~fqq~tG~~~~~~Y~~~if~~~g~~~~~-------~~~~~~~~~v~~~~t~~~~~lvd~~gRr~lll~s~~~  368 (513)
T KOG0254|consen  296 LIIGLLLQLFQQLTGINYVFYYSTTIFKSAGLKSDT-------FLASIILGVVNFLGTLVATYLVDRFGRRKLLLFGAAG  368 (513)
T ss_pred             HHHHHHHHHHHHHhCCceEEeehHHHHHhcCCCCch-------HHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHhHHH
Confidence            333455566666667788888888888888776541       2334444445556666668999999999999999999


Q ss_pred             HHHHHHHHhccch-------------HHHHHHHH-HHHhhhccchhhHHHHHhhhccchhhhHHHHHHHHHHHHHHhHHH
Q 015847          122 VVIFNTLFGLSVN-------------FWMAVLTR-FLLGSLNGLLGPIKAYACEIFREEHQALGLSTVSTAWGIGLIIGP  187 (399)
Q Consensus       122 ~~~~~~~~~~~~~-------------~~~l~~~r-~l~G~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p  187 (399)
                      +.++.++.+....             ...+...- ++..+..+.......+.+|.+|.+.|+++.++......+...+-.
T Consensus       369 m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~g~g~v~w~~~sEifp~~~r~~~~s~~~~~n~~~~~~v~  448 (513)
T KOG0254|consen  369 MSICLVILAVVGVFALYYPNSSKGAGWLAIVFLCLFIFSFAIGWGPVPWVIVSEIFPLRLRSKGASLAVAVNWLWNFLIS  448 (513)
T ss_pred             HHHHHHHHHHHHHHhccCCCcccchhHHHHHHHHHHHHHHhcccccchhhhhhccCcHhHHhhhHHHHHHHHHHHHHHHH
Confidence            9999887775311             11122222 222333333333477889999999999999887665555444333


Q ss_pred             HhhhhhcCCCCCCCCcccccccccCCcchhhHHHHHHHHHHHH-HHHHhcccCCCCCC
Q 015847          188 ALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVT-IAAFWLPETLHRHN  244 (399)
Q Consensus       188 ~i~~~l~~~~~~~~~~~gw~~~f~~~~~~~~~~~~~~~~~~~~-~~~~~~~e~~~~~~  244 (399)
                      ...-.+.+       ..++...|        +.+.++..+... ...+++||+.....
T Consensus       449 ~~~~~~~~-------~~~~~~~f--------~~f~~~~~~~~~~fv~~~~pETkg~sl  491 (513)
T KOG0254|consen  449 FFFPFITE-------ALGIGGTF--------GYFGGICLLSLIIFVFFFVPETKGLTL  491 (513)
T ss_pred             HHHHHHHH-------hccccchH--------HHHHHHHHHHHHHHheEEcccCCCCcH
Confidence            33223322       11111111        233344444444 56778899876543

>PF12832 MFS_1_like: MFS_1 like family

Probab=98.36  E-value=6.1e-07  Score=61.68  Aligned_cols=70  Identities=23%  Similarity=0.529  Sum_probs=60.4

Q ss_pred             HHHHHHHhhccccchhhhHHHHHHHhccCccccchhhhhhHHHHHHHHHHHhhhhcccccccccCCchhhHHHHHH
Q 015847           46 IWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTAS  121 (399)
Q Consensus        46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~  121 (399)
                      +-...++.....+...|++|.+.++.|++..+      +|.+.++..+...++++++|.++||+++++..+....+
T Consensus         5 lk~~yf~~f~~~g~~~Pfl~~~~~~~Gl~~~~------iGil~~i~~~~~~~~~pl~g~laDk~~~~~~~l~~~~~   74 (77)
T PF12832_consen    5 LKAFYFFYFAALGCLYPFLPLYLKQLGLSPSQ------IGILSAIRPLIRFLAPPLWGFLADKFGKRKVILLGSLF   74 (77)
T ss_pred             HHHHHHHHHHHHHHHHhhhhHhhhhcCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHCccHHHHHHHHH
Confidence            34455666677788899999999999999999      99999999999999999999999999998887766544

>KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=98.33  E-value=4.4e-06  Score=70.41  Aligned_cols=108  Identities=17%  Similarity=0.129  Sum_probs=83.2

Q ss_pred             HHHHhhccccchhhhHHHHHHHhccCccccchhhhhhHHHHHHHHHHHhhhhcccccccccCCchhhHHHHHHHHHHHHH
Q 015847           49 IVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTL  128 (399)
Q Consensus        49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~  128 (399)
                      .+++...+.....|+.-++.+.+|..+.+      +|.+..+......+...+.|.++||-|||+.-+.-++-+.++|+ 
T Consensus        45 VyslmmAgDWLQgPYvYyLYstYgFgkG~------IgqLfiaGfgSsmLFGtivgSLaDkqGRKracvtycitYiLsCi-  117 (454)
T KOG4332|consen   45 VYSLMMAGDWLQGPYVYYLYSTYGFGKGD------IGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCITYILSCI-  117 (454)
T ss_pred             HHHHHHhhhhhcCceeeeeehhcCccCCc------cceeeecccchHHHHHHHHHHHHhhhccccceeeehHHHHHHHH-
Confidence            34455556677788888888999999999      88877777777778888999999999999976665555555544 


Q ss_pred             HhccchHHHHHHHHHHHhhhccchhhH--HHHHhhhc
Q 015847          129 FGLSVNFWMAVLTRFLLGSLNGLLGPI--KAYACEIF  163 (399)
Q Consensus       129 ~~~~~~~~~l~~~r~l~G~~~~~~~~~--~~~~~~~~  163 (399)
                      .-.++.+-.++++|++-|++.+....+  .-+++|..
T Consensus       118 TKhSpqYkVLmVGR~LGGiaTsLLFSaFEsWliaEHn  154 (454)
T KOG4332|consen  118 TKHSPQYKVLMVGRVLGGIATSLLFSAFESWLIAEHN  154 (454)
T ss_pred             hhcCCceEEEeehhhhhhHHHHHHHHHHHHHHHHHhh
Confidence            335788899999999999998876554  44567765

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=98.31  E-value=5.8e-06  Score=79.11  Aligned_cols=111  Identities=12%  Similarity=0.056  Sum_probs=90.5

Q ss_pred             hhHHHHHHHHHHHhhhhcccccccccCCchh-------hHHHHHHHHHHHHHH-----hc-----cchHHHHHHHHHHHh
Q 015847           84 AGYVGSSFMFGRALTSVFWGLVADRYGRKPV-------IIMGTASVVIFNTLF-----GL-----SVNFWMAVLTRFLLG  146 (399)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~G~l~dr~Grr~~-------l~~~~~~~~~~~~~~-----~~-----~~~~~~l~~~r~l~G  146 (399)
                      .+++.+...+...+..++.+++.||.|+|+.       +.+|.++.+++.+..     .+     ..+.+.++...++.|
T Consensus       311 ~~~~~~~n~~~iii~~pl~~~l~~rl~~r~~~~~~~~k~~~G~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~l~g  390 (489)
T PRK10207        311 PVSFQALNPFWVVVASPILAGIYTHLGSKGKDLSMPMKFTLGMFLCSLGFLTAAAAGMWFADAQGLTSPWFIVLVYLFQS  390 (489)
T ss_pred             HHHHHhHhHHHHHHHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHH
Confidence            4667777777787889999999999999874       677777766665432     11     135777888889999


Q ss_pred             hhccchhhH-HHHHhhhccchhhhHHHHHHHHHHHHHHhHHHHhhhhhc
Q 015847          147 SLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLA  194 (399)
Q Consensus       147 ~~~~~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~i~~~l~  194 (399)
                      +|.+...|. .+++.+..|++.++.++|++....++|+.+|..++....
T Consensus       391 ~Ge~~~~~~g~~~~~~~aP~~~~g~~~g~~~l~~~ig~~lg~~l~~~~~  439 (489)
T PRK10207        391 LGELFISALGLAMIAALVPQHLMGFILGMWFLTQAAAFLLGGYVATFTA  439 (489)
T ss_pred             HHHHHHhHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            999998886 999999999999999999999999999999998887664

>PTZ00207 hypothetical protein; Provisional

Probab=98.30  E-value=4.4e-06  Score=80.61  Aligned_cols=186  Identities=11%  Similarity=0.065  Sum_probs=128.0

Q ss_pred             hhHHHHHHHHHHHhhccccchhhhHHHHHHHh-ccCccccchhhhhhH-HHHHHHHHHHhhhhccccccc---c------
Q 015847           40 ITELFSIWIIVLCTALPISSLFPFLYFMIKDF-QIAKREEDIGSYAGY-VGSSFMFGRALTSVFWGLVAD---R------  108 (399)
Q Consensus        40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~G~l~d---r------  108 (399)
                      ..+++.++...++.......+..-+.++.+.+ |.+.+++     ... +.+...++..+|.+..|.++.   |      
T Consensus       352 ~~d~Wll~~~~~cg~g~gl~~~~N~~qI~~sl~g~~~~~~-----~~~~~vsL~si~~~~GRl~~g~~~~~~~~~~~~~r  426 (591)
T PTZ00207        352 TARLWCLLWSIFCCVGAHFVIIFNARFIYTALAGEAPDDA-----LNTLLTVLNGVGSAVGRLCMSYFEIWSQKRRAEDR  426 (591)
T ss_pred             chhHHHHHHHHHHhhCchheeeecHHHHHHHhcCCCCCcc-----ceeeehhhhhHHHHhhHHHHHHHHHHHHhhccccc
Confidence            34566777777776666556666677888888 6633221     122 667777777777777777661   1      


Q ss_pred             cCCchhhHHHHHHHHHHHHHHhccchHHHHHHHHHHHhhhccchhhH-HHHHhhhccchhhhHHHHHHHHHHHHHHhHH-
Q 015847          109 YGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIG-  186 (399)
Q Consensus       109 ~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~-  186 (399)
                      +.|--.+.+..+ +.++.+++++.-....+++..++.|++.|...+. ...++|.|. |+-|+-..+......+|..+- 
T Consensus       427 ~prt~~l~~~~~-~~~~~lll~~~~p~~~L~~~~~lvg~~~G~~~~~~~~i~selFg-k~~g~~yN~~~~a~pigs~~~n  504 (591)
T PTZ00207        427 VPITIALFIPSV-CIITMLTLFLTLPKAALPLPYFIAAFANGFMAATIALVTRTIFA-KDPAKHYNFCFLGSVLSAIFLN  504 (591)
T ss_pred             cchhHHHHHHHH-HHHHHHHHHHHCCccHhHHHHHHHHHHhhHhHHHHHHHHHHHhc-cchHHHhhHHhHHHHHHHHHHH
Confidence            222223334444 6666666666544468999999999999998885 999999999 899999998888888888765 


Q ss_pred             HHhhhhhcCCCCCCCCcccccccccCCcchhhHHHHHHHHHHHHHHHHh
Q 015847          187 PALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFW  235 (399)
Q Consensus       187 p~i~~~l~~~~~~~~~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~  235 (399)
                      -.+.|.+.|....   -.|-....|+..++.++++.+++++...+....
T Consensus       505 ~~l~G~~Yd~ea~---k~~~~~C~G~~C~~~~~~v~~~~~~~g~~~s~~  550 (591)
T PTZ00207        505 RLLYGEWYTQQAD---KLGQDVCTERVCVVMPLAFLLGLSFLAFITSTY  550 (591)
T ss_pred             HHHHHHHHHHHHh---hCCCCeeCCceeeHhHHHHHHHHHHHHHHHHhh
Confidence            6677777763210   023345677888999999998888877665433

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter

Probab=98.20  E-value=4.8e-05  Score=71.85  Aligned_cols=185  Identities=15%  Similarity=0.041  Sum_probs=118.0

Q ss_pred             HHHHHHHHHHHhhccccchhhhHHHHH-H-HhccCccccc---hh-hhhhHHHHHHHHHHHhhhhcccccccccCC-chh
Q 015847           42 ELFSIWIIVLCTALPISSLFPFLYFMI-K-DFQIAKREED---IG-SYAGYVGSSFMFGRALTSVFWGLVADRYGR-KPV  114 (399)
Q Consensus        42 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~---~~-~~~~~~~~~~~~~~~~~~~~~G~l~dr~Gr-r~~  114 (399)
                      .+..+++..++.-++...+..+...+. + -|+-++.+..   .+ ....+....+.+...+.+++.-++.+|+|+ |++
T Consensus       259 ~m~~l~~vqffsW~a~f~~~~y~T~~vg~~v~~~~~~~~~~y~~gvr~G~~~l~~~s~~~~i~s~~l~~l~~~~g~~k~~  338 (477)
T TIGR01301       259 PVWILLLVTCLNWIAWFPFILFDTDWMGREVYGGSVNQGAKYDDGVRAGAFGLMLNSVVLGITSIGMEKLCRGWGAGKRL  338 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhccHHHHHHHcCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhH
Confidence            344566666666665554444444333 2 2443332110   01 112344445555555777778889999995 677


Q ss_pred             hHHHHHHHHHHHHHHhccch---------------------HHHHHHHHHHHhhhccchhhH-HHHHhhhccc--hhhhH
Q 015847          115 IIMGTASVVIFNTLFGLSVN---------------------FWMAVLTRFLLGSLNGLLGPI-KAYACEIFRE--EHQAL  170 (399)
Q Consensus       115 l~~~~~~~~~~~~~~~~~~~---------------------~~~l~~~r~l~G~~~~~~~~~-~~~~~~~~~~--~~r~~  170 (399)
                      ..++.++.+++.....+.++                     .+..++...+.|+..+..... ++++++..++  ++.|.
T Consensus       339 ~~~s~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Gi~~A~~~siPfal~s~~~~~~~~~~G~  418 (477)
T TIGR01301       339 WGIVNIILAICLAATVLVTYVAKNSRYYDGDGESLPPPTGIKASALIVFAILGIPLAITYSIPFALASIRSSNLGAGQGL  418 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhhccccccccccccCcchhhHHHHHHHHHHhhHHHHHHHHHhHHHHHHHccccCCCCcc
Confidence            78888888877777665432                     366777778899988877665 9999999995  45599


Q ss_pred             HHHHHHHHHHHHHhHHHHhhhhhcCCCCCCCCcccccccccCCcchhhHHHHHHHHHHHH-HHHHhcccCC
Q 015847          171 GLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVT-IAAFWLPETL  240 (399)
Q Consensus       171 ~~~~~~~~~~~g~~~~p~i~~~l~~~~~~~~~~~gw~~~f~~~~~~~~~~~~~~~~~~~~-~~~~~~~e~~  240 (399)
                      .+|+.+.+..+.+++..+..|.+.+.       +|-+       -...+.+.++..+++. ...+.+|+++
T Consensus       419 ~mgilN~~I~lpQii~sl~~g~~~~~-------~g~~-------~~~~~~~~gv~~~~aa~~~~~~~~~~~  475 (477)
T TIGR01301       419 SMGVLNLAIVIPQIIVSLGSGPWDQL-------FGGG-------NLPAFVVGAVAAFVSGLLALILLPRPR  475 (477)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHH-------cCCC-------CeeHHHHHHHHHHHHHHHHHHhCCCCC
Confidence            99999999999999999888886552       2211       1223355555555544 4456677654

This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.

>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=98.19  E-value=2.7e-06  Score=80.46  Aligned_cols=142  Identities=12%  Similarity=0.067  Sum_probs=93.2

Q ss_pred             HHHHHHHHHHHhhccccchhhhHHHHHHH-hccCccccchhhhhhHHHHHHHHHHHhhhhcccccccc----cCCchhhH
Q 015847           42 ELFSIWIIVLCTALPISSLFPFLYFMIKD-FQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADR----YGRKPVII  116 (399)
Q Consensus        42 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~dr----~Grr~~l~  116 (399)
                      .++...+..++.....+....++|.+.++ .|.+..+      .+.+...+.++.+++.+++|+++||    ..+|....
T Consensus       274 ~vw~~~l~~~~~~lv~~~~~~~lpl~l~~~~~~s~~~------a~~ls~~~~~~g~v~~i~ag~lsdr~~~~~~~~~~~~  347 (495)
T KOG2533|consen  274 GVWPFSLCYFFLKLVNYGFSYWLPLYLKSNGGYSELQ------ANLLSTPYDVGGIVGLILAGYLSDRLKTIFARRLLFI  347 (495)
T ss_pred             hHHHHHHHHHHHhhccccHHHHHHHHHHcCCCcChHH------hccccchHHhhhHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence            34456677777788888899999988887 5688888      9999999999999999999999999    66777666


Q ss_pred             HHHHHHHHHH-HHHhccchHHHHHHHHHHHhhhccchhhH-HHHHhhhccchhh-hHHHHHHHHHHHHHHhHHHHh
Q 015847          117 MGTASVVIFN-TLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQ-ALGLSTVSTAWGIGLIIGPAL  189 (399)
Q Consensus       117 ~~~~~~~~~~-~~~~~~~~~~~l~~~r~l~G~~~~~~~~~-~~~~~~~~~~~~r-~~~~~~~~~~~~~g~~~~p~i  189 (399)
                      ....+..+.. +.....++.......-+....+.....++ ....++...++.| -...+....+.+.++.++|.+
T Consensus       348 ~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~s~~~~g~~k~~~~~~~~i~~~~s~~~~~~~~  423 (495)
T KOG2533|consen  348 VFLCLYAIIGAISLLAAAVLPGAYGAFLIGPYGLIATAIIALSWTSANLAGNTKALTTVSAIIDGTGSAGAISGQL  423 (495)
T ss_pred             HHHHHHHHHHHHHHHhhccchHHhHHHHhcchhhHHHHHHHHhhccccccchHHhHHHHhhhhcchhHHHHhhhhh
Confidence            6655554433 44444433333333223333334444453 7777777765444 444444455555555555444

>KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism]

Probab=98.18  E-value=3.1e-05  Score=68.69  Aligned_cols=141  Identities=13%  Similarity=0.231  Sum_probs=84.2

Q ss_pred             ChhHHHHHHHHHHHhhccccchhhhHHHHHHHhccCccccchhhhhhHHHHHHHHHHHhhhhccccccc-----ccCCch
Q 015847           39 PITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVAD-----RYGRKP  113 (399)
Q Consensus        39 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~d-----r~Grr~  113 (399)
                      .++.+..+.+.+.+.++..+... .+|.+.+.-|+|.++      .+....++.=  ...-+.|.++.|     |+||||
T Consensus        29 d~~~illLl~LYllQGiP~GL~~-~iP~lL~ak~vSyt~------~a~fS~ay~P--~sLKllWaPiVDs~y~k~~Grrk   99 (510)
T KOG3574|consen   29 DRSSILLLLFLYLLQGIPLGLIG-AIPLLLQAKGVSYTS------QAIFSFAYWP--FSLKLLWAPIVDSVYSKRFGRRK   99 (510)
T ss_pred             hhhhHHHHHHHHHHcCCchhHhh-hhHHHhcCCCcchhh------hhhhhhhhhH--HHHHHHHHhhhHHHHHHhhcccc
Confidence            34567778888999999998888 899999888888877      4444333321  123568888999     999988


Q ss_pred             hhHHH-HHHHHHHHHHHhcc-----------chHHHHHHHHHHHhhhccchhhH-HHHHhhhccchhhhHHHHHHHHHHH
Q 015847          114 VIIMG-TASVVIFNTLFGLS-----------VNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWG  180 (399)
Q Consensus       114 ~l~~~-~~~~~~~~~~~~~~-----------~~~~~l~~~r~l~G~~~~~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~  180 (399)
                      .-++- ..+....+...+..           ++...+....++.-+..+....+ -.+.-.+..+++-|-+......+..
T Consensus       100 sWvvp~q~llG~~mllLs~~v~~~~g~ng~~p~v~~lt~~f~LLnflaAtQDIAVDgwALtmLs~e~lgyaST~q~Vg~~  179 (510)
T KOG3574|consen  100 SWVVPCQYLLGLFMLLLSYLVDRGLGGNGGLPNVVALTLLFLLLNFLAATQDIAVDGWALTMLSRENLGYASTCQSVGQT  179 (510)
T ss_pred             ceeeehHHHHHHHHHHHhhCCCcccccCCCCcchHHHHHHHHHHHHHHhhhhhhhhHHHHHhcCHhhcCchhHHHHHHHh
Confidence            65433 33333333333321           23333333334445555554443 5666666677776655554444445


Q ss_pred             HHHhHHHH
Q 015847          181 IGLIIGPA  188 (399)
Q Consensus       181 ~g~~~~p~  188 (399)
                      .|..++..
T Consensus       180 ~GyfL~~~  187 (510)
T KOG3574|consen  180 AGYFLGNV  187 (510)
T ss_pred             hhHHhhcc
Confidence            55444433

>PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions

Probab=98.07  E-value=0.0009  Score=63.39  Aligned_cols=247  Identities=15%  Similarity=0.143  Sum_probs=129.6

Q ss_pred             HHHhhhhcccccccccCCchhhHHHHHHHHHHHHHHhcc---------c----------------------hHHHHHHHH
Q 015847           94 GRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLS---------V----------------------NFWMAVLTR  142 (399)
Q Consensus        94 ~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~---------~----------------------~~~~l~~~r  142 (399)
                      +..+...+..+++|+++|.+++-+....+.....++++.         +                      +.|...+..
T Consensus        71 ~a~~f~~~y~kl~n~~s~~~lFy~~~~~F~~fF~~f~~vlyP~~~~lhp~~~~~~~~~~~~~~~~~~i~~~~~Wt~slfY  150 (491)
T PF03219_consen   71 VAILFTILYSKLSNRLSREKLFYIIIIPFLGFFALFAFVLYPNRDILHPDAFADKLLAILPPGFKGFIAMFRNWTFSLFY  150 (491)
T ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhhchhhcCCCHHHHHhhhhccchHHHHHHHHHHHHHHHHH
Confidence            344556778999999999998877666666555555431         1                      122333333


Q ss_pred             HHHhhhccc-hhhH-HHHHhhhccchhhhHHHHHHHHHHHHHHhHHHHhhhhhcC-CCCCCCCcccccccccCCcchhhH
Q 015847          143 FLLGSLNGL-LGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQ-PAEKYPNLFSSESLFGKFPYFLPC  219 (399)
Q Consensus       143 ~l~G~~~~~-~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~i~~~l~~-~~~~~~~~~gw~~~f~~~~~~~~~  219 (399)
                      ++.-+-+.. .... +.+..|.++.+|-.+..+++..+.++|.+++..+..++.+ ...    ...    .+...|....
T Consensus       151 v~aElwgsvvlSlLFW~fAN~itt~~eAKRfYpl~g~ganigli~sG~~~~~~~~~~~~----~~~----~~~~~~~~~l  222 (491)
T PF03219_consen  151 VMAELWGSVVLSLLFWGFANEITTVEEAKRFYPLFGLGANIGLIFSGQLTSYFSSFLRK----SLP----AGVDAWELSL  222 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh----hcc----cccccHhHHH
Confidence            333332223 3334 8899999999999999999999999999999988888876 111    000    0011122111


Q ss_pred             ----HHHHHHHHHHHHHHHhcccCCCCCCCCCCccchhhhhhhhhhhhhhhccccCCcccccccccchhHHHHHHHHHHH
Q 015847          220 ----LCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKNWPLMSSIIVYCVFS  295 (399)
Q Consensus       220 ----~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  295 (399)
                          ....+.+++......++.+....++...++.+.         ++.++.+.......+.++++|.+..+.+...+++
T Consensus       223 ~~l~~~v~~~g~~i~~~~~~~~~~vl~~~~~~~~~~~---------~kk~k~k~s~~es~k~l~kS~yL~~Ia~lvi~Yg  293 (491)
T PF03219_consen  223 NSLMGIVLILGIVIILLYRYMNKNVLTDPRFYPSAKK---------KKKKKPKMSLKESFKLLLKSKYLLCIALLVIAYG  293 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHccCccccchhhhc---------ccccCCCccHHHHHHHHHhCHHHHHHHHHHHHHH
Confidence                112222222222233332211111000000000         0000001111234556778888887776666655


Q ss_pred             hhhhhHHHHHHHhhcCCcccCccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHH
Q 015847          296 LHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIA  360 (399)
Q Consensus       296 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  360 (399)
                      ..........-....+.+... ..++ .-.|-.....++..++.. ++++.+.+|+|-+....+.
T Consensus       294 i~inLvE~~wK~~lk~~~~~~-~~ys-afmG~~~~~tGivtii~~-~l~~~iir~~GW~~~Alit  355 (491)
T PF03219_consen  294 ISINLVEVVWKSQLKQLYPDP-NDYS-AFMGKFSSWTGIVTIIMM-FLSSNIIRRFGWRTAALIT  355 (491)
T ss_pred             HHHHHHHHHHHHHHHHHCCCc-hHHH-HHHHHHHHHHHHHHHHHH-HHHHHHHHHhhHHHHHHHh
Confidence            554444433333333221111 1112 224555666677777776 5788888988876665544

One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane

>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=98.03  E-value=6.8e-05  Score=66.73  Aligned_cols=121  Identities=14%  Similarity=0.069  Sum_probs=108.0

Q ss_pred             HHhccCccccchhhhhhHHHHHHHHHHHhhhhcccccccccC--CchhhHHHHHHHHHHHHHHhccchHHHHHHHHHHHh
Q 015847           69 KDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYG--RKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLG  146 (399)
Q Consensus        69 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~dr~G--rr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G  146 (399)
                      +.+|.++.|      .|-+.+...+...+.+....+..||..  -+-.+..+..+..-..++...++....+..+..+-.
T Consensus       290 ~rfg~ss~~------~G~vl~~tGl~m~~~ql~~~~~l~~~~~~~~a~l~~~l~~~vP~~llls~~~~~~~l~~~s~l~s  363 (451)
T KOG2615|consen  290 GRFGYSSMQ------QGKVLSTTGLLMLVIQLALVPILPRYKGNIKAVLLFSLLLIVPAFLLLSLARTPVVLYLGSTLKS  363 (451)
T ss_pred             CccCCChhh------heeeeehhhHHHHHHHHhccccccccccchhhHHHHHHHHHHHHHHHHhccccchhhhHHHHHHH
Confidence            678999988      888888888888899999999999987  777888888888888888888899899999999999


Q ss_pred             hhccchhhH-HHHHhhhccchhhhHHHHHHHHHHHHHHhHHHHhhhhhcC
Q 015847          147 SLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQ  195 (399)
Q Consensus       147 ~~~~~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~i~~~l~~  195 (399)
                      +..+...++ ..++....|+++||..+|+......++-++||+++|.+..
T Consensus       364 f~~A~~vt~Lt~Lv~~~~~~~qrG~~~Gi~~Sl~alaRaiGPlv~g~i~~  413 (451)
T KOG2615|consen  364 FSTASVVTCLTSLVHKYGPQSQRGTLNGIFRSLGALARAIGPLVSGVIFS  413 (451)
T ss_pred             HHHHHhhHHHHHHHHhcCCcccchHHHHHHHHHHHHHHHhhhhhhheeEE
Confidence            988888886 8889999999999999999999999999999999998876

>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]

Probab=97.99  E-value=4.5e-05  Score=71.70  Aligned_cols=124  Identities=20%  Similarity=0.281  Sum_probs=107.6

Q ss_pred             HHHHHhccCccccchhhhhhHHHHHHHHHHHhhhhccc-ccccccCCchhhHHHHHHHHHHHHHHhccchHHHHHHHHHH
Q 015847           66 FMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWG-LVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFL  144 (399)
Q Consensus        66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G-~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l  144 (399)
                      +....++.++.+      .+...+...+...+++.+.. .+...+|-|+++..|.+.-.+..+..+++++.|+++....+
T Consensus       267 yl~~~f~w~~~~------~s~~~~~~~~~~~i~~l~~~~~l~~~l~~~~~i~lGl~~~~~~~~~~af~~~~w~~~~~~v~  340 (463)
T KOG2816|consen  267 YLKAKFGWNKKE------FSDLLSLVSILGIISQLLLLPLLSSILGEKRLISLGLLSEFLQLLLFAFATETWMMFAAGVV  340 (463)
T ss_pred             EEeeecCcCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhHHHHHHHHHHHHHHHhccchhhhHHHHH
Confidence            344578899988      88888888888888888776 78888999999999999999999999999999999998888


Q ss_pred             HhhhccchhhHHHHHhhhccchhhhHHHHHHHHHHHHHHhHHHHhhhhhcC
Q 015847          145 LGSLNGLLGPIKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQ  195 (399)
Q Consensus       145 ~G~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~i~~~l~~  195 (399)
                      .++.........+.++.+.+++++|+++++.....++...++|.+-+.+..
T Consensus       341 ~~~~~~~~pa~~s~~s~~v~~~e~g~v~~~is~i~~l~~~~~~~~~~~i~~  391 (463)
T KOG2816|consen  341 VALAGIVFPAIRAFASILVSPEEQGKVFGIISGIEGLSGVVSPALYGNIFA  391 (463)
T ss_pred             HHhhcchhHHHHhHHHhhcccccccchhhHHHHHHHHhhhhhHHHHHHHHH
Confidence            887655555569999999999999999999999999999999998887754

>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins

Probab=97.89  E-value=0.00014  Score=70.16  Aligned_cols=193  Identities=18%  Similarity=0.166  Sum_probs=127.0

Q ss_pred             HHHHHHHHHHHhhccccchhhhHHHHH-HHhccCcc---ccchhhhhhHHHHHHHHHHHhhhhcccccccccCC-chhhH
Q 015847           42 ELFSIWIIVLCTALPISSLFPFLYFMI-KDFQIAKR---EEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGR-KPVII  116 (399)
Q Consensus        42 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~dr~Gr-r~~l~  116 (399)
                      .+....+..++.+........+.|... .-|+-+..   +      .++....+.++..+++.+.|.+..+++| |+.++
T Consensus       311 ~~~~~lvi~fi~G~~~~s~~~l~p~~~~~vf~~d~~~~~~------~~~~s~~~~fg~~~g~~i~g~l~~~ir~~Kw~li  384 (599)
T PF06609_consen  311 GFAALLVISFISGMNFFSVNILWPQQVVNVFGSDPISITE------IGWISSPVGFGSCAGAVILGLLFSKIRHIKWQLI  384 (599)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcccce------eehhhhhHHHHHHHHHHHHHHHHHHccchhHHHH
Confidence            344444555556555555555666443 34544442   4      6788888888989999999999998887 55556


Q ss_pred             HHHHHHHHHHHHHhc--cchHHHHHHHHHHHhhhccchhh-HHHHHhhhccchhhhHHHHHHHHHHHHHHhHHHHhhhhh
Q 015847          117 MGTASVVIFNTLFGL--SVNFWMAVLTRFLLGSLNGLLGP-IKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFL  193 (399)
Q Consensus       117 ~~~~~~~~~~~~~~~--~~~~~~l~~~r~l~G~~~~~~~~-~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~i~~~l  193 (399)
                      ++.+++.+++-+++.  .+|....+..-++.|++.|.... ......-..|++.-+.+.++..+.-.+|+.+|..+..-+
T Consensus       385 ~~~~~~ta~~Gama~~~~~n~~~~i~~~~l~g~giG~~~~~~~~~~ql~~p~~~ig~a~gL~~s~R~~GGsIg~aIy~~I  464 (599)
T PF06609_consen  385 FGSVLMTAFCGAMAAVRPDNKNAAIAFLVLAGFGIGGILVPAIVIAQLIVPDEDIGTATGLTGSIRSIGGSIGYAIYNAI  464 (599)
T ss_pred             HHHHHHHHHHHHHHHccCCCcchHHHHHHHHHHhHHHHHHHHHHeeEeeeCchHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence            777666655444433  34555556667888888776554 466666677889999999999888888888887665333


Q ss_pred             cCCC---------------CCCCC--------------------cc------------cccccccCCcchhhHHHHHHHH
Q 015847          194 AQPA---------------EKYPN--------------------LF------------SSESLFGKFPYFLPCLCISLFA  226 (399)
Q Consensus       194 ~~~~---------------~~~~~--------------------~~------------gw~~~f~~~~~~~~~~~~~~~~  226 (399)
                      ..+.               .+.+.                    .-            .-|..| ..+++.+++.....+
T Consensus       465 ~~n~~~~~l~~~v~~a~~~aglp~~sl~~li~a~~~~~~~a~~~iPGit~~i~~a~~~A~~~aY-a~ay~~V~~~siaFG  543 (599)
T PF06609_consen  465 FTNKLPKELPKYVAPAALAAGLPESSLPALIEALAAGNLEALAAIPGITPEIIAAVVAAFQEAY-AHAYRYVYYSSIAFG  543 (599)
T ss_pred             HHhhhhHhHHHHHHHHHHhcCCChhhHHHHHHHHhccChhHHhhCCCCCHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence            2100               00000                    00            123445 566788888888888


Q ss_pred             HHHHHHHHhcccCCC
Q 015847          227 FGVTIAAFWLPETLH  241 (399)
Q Consensus       227 ~~~~~~~~~~~e~~~  241 (399)
                      .+++++.+++++..+
T Consensus       544 ~vaiiaa~fl~d~~~  558 (599)
T PF06609_consen  544 VVAIIAALFLGDIDK  558 (599)
T ss_pred             HHHHHHHHHcCChHH
Confidence            889999899887654

Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].

>PF12832 MFS_1_like: MFS_1 like family

Probab=97.89  E-value=0.00019  Score=49.30  Aligned_cols=71  Identities=17%  Similarity=0.231  Sum_probs=58.7

Q ss_pred             HHHHHHHHHHhhhhhHHHHHHHhhcCCcccCccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHH
Q 015847          286 SSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVL  363 (399)
Q Consensus       286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  363 (399)
                      ..-..++++.....+...++|.|+.+      .|+++.++|.+.++..+..+++. ++.+++.||.++++.......+
T Consensus         4 ~lk~~yf~~f~~~g~~~Pfl~~~~~~------~Gl~~~~iGil~~i~~~~~~~~~-pl~g~laDk~~~~~~~l~~~~~   74 (77)
T PF12832_consen    4 PLKAFYFFYFAALGCLYPFLPLYLKQ------LGLSPSQIGILSAIRPLIRFLAP-PLWGFLADKFGKRKVILLGSLF   74 (77)
T ss_pred             HHHHHHHHHHHHHHHHHhhhhHhhhh------cCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHCccHHHHHHHHH
Confidence            34556677777777888888888876      79999999999999999999999 5899999999998887665543

>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]

Probab=97.87  E-value=0.00039  Score=67.51  Aligned_cols=142  Identities=19%  Similarity=0.144  Sum_probs=96.8

Q ss_pred             HHHHHHHHHHHhhhhcccccccccCCchhhHHHHHHHHHHHHHHhccchHHH---HHHHHHHHhhhccc-hhhHHHHHhh
Q 015847           86 YVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWM---AVLTRFLLGSLNGL-LGPIKAYACE  161 (399)
Q Consensus        86 ~~~~~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~---l~~~r~l~G~~~~~-~~~~~~~~~~  161 (399)
                      .................+...|++|||.....+.++..++++..++..+...   ..+...+...+.+. ......+.+|
T Consensus       354 ~~~~~~~~~~~p~~~~~~~~~~~~gR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e  433 (521)
T KOG0255|consen  354 LNFTLSGLVELPAYFRNGLLLPEFGRRPPLFLSLFLAGIGLLLFGWLPDDLGGWLHWILPLLGKFFIGSAFNLIFLYSAE  433 (521)
T ss_pred             HHHHHHHHHHhhHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            3333333344555556688999999999999999999999999888664433   33333344444444 3335889999


Q ss_pred             hccchhhhHHHHHHHHHHHHHHhHHHHhhhhhcCCCCCCCCcccccccccCCcchhhHHHHHHHHH-HHHHHHHhcccCC
Q 015847          162 IFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAF-GVTIAAFWLPETL  240 (399)
Q Consensus       162 ~~~~~~r~~~~~~~~~~~~~g~~~~p~i~~~l~~~~~~~~~~~gw~~~f~~~~~~~~~~~~~~~~~-~~~~~~~~~~e~~  240 (399)
                      .+|...|..+.+..+....+|.+++|.+.......               .  ...+....+..+. ...+...++||+.
T Consensus       434 l~pt~~r~~~~~~~~~~~~~~~i~ap~~~~~~~~~---------------~--~~~~~~~~~~~~~l~~~~~~~~lpet~  496 (521)
T KOG0255|consen  434 LIPTVVRNTAVGAISAAARLGSILAPLFPLLLRQM---------------F--PLLGLILFGWLALLLGLLSLLLLPETK  496 (521)
T ss_pred             hccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh---------------c--ccchHHHHHHHHHHHHHHHHhcCcccC
Confidence            99999999999999999999999999988666431               0  1111122233333 3445558899987


Q ss_pred             CCCC
Q 015847          241 HRHN  244 (399)
Q Consensus       241 ~~~~  244 (399)
                      ....
T Consensus       497 ~~~l  500 (521)
T KOG0255|consen  497 GKPL  500 (521)
T ss_pred             CCCC
Confidence            6654

>KOG3810 consensus Micronutrient transporters (folate transporter family) [Coenzyme transport and metabolism]

Probab=97.85  E-value=0.00012  Score=64.33  Aligned_cols=128  Identities=16%  Similarity=0.123  Sum_probs=98.2

Q ss_pred             hhcccccccccCCchhhHHHHHHHHHHHHHHhccchHHHHHHHHHHHhhhccchhhHHHHHhhhccchhhhHHHHHHHHH
Q 015847           99 SVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPIKAYACEIFREEHQALGLSTVSTA  178 (399)
Q Consensus        99 ~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~  178 (399)
                      -.+.=.+.|..-.|++++.-.+.......+.-+.++.+.+-+.-+..|...+.-..-++++-+..+|+++.++.+...+.
T Consensus        59 LvpvFlLTD~lrYKPvivlq~ls~v~~w~~lv~g~sV~~mQvlE~FyG~~tAaEIAYysYIYs~Vd~~~Yqrvt~y~RaA  138 (433)
T KOG3810|consen   59 LVPVFLLTDYLRYKPVVVLQALSGVPVWIMLVFGPSVKAMQVLEFFYGPATAAEIAYYSYIYSKVDPEMYKRVTGYCRAA  138 (433)
T ss_pred             HHHHHHHhhhhhcceeeeeeccchhHHHHHHHhcCCchheeeehhhcChHHHHHHhhhheeeeecCHHHHHHHHHHhHHH
Confidence            33444678999999999888888888888888899999999989999988777666699999999999999999999999


Q ss_pred             HHHHHhHHHHhhhhhcCCCCCCCCcccccccccCCcchhhHHHHHHHHHHHHHHHHhcccCC
Q 015847          179 WGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETL  240 (399)
Q Consensus       179 ~~~g~~~~p~i~~~l~~~~~~~~~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~  240 (399)
                      .-.|-..|..++..+....              ..++...-.+......++....+++|..+
T Consensus       139 ~L~g~~~g~vlaQlLvs~~--------------~~sy~~LN~ISL~~~~ia~~~A~fLP~v~  186 (433)
T KOG3810|consen  139 FLVGKFVGSVLAQLLVSLE--------------TLSYTTLNYISLAEVTIAVLLALFLPRVK  186 (433)
T ss_pred             HHHHhHHHhHHHHHHhhhc--------------ccchhhhchhhHHHHHHHHHHHhhCCCCc
Confidence            9999999999998888621              22233333444444444555667777655

>COG3202 ATP/ADP translocase [Energy production and conversion]

Probab=97.72  E-value=0.01  Score=55.15  Aligned_cols=299  Identities=12%  Similarity=0.121  Sum_probs=155.6

Q ss_pred             hhHHHHHHHHHHHhhccccchhhhHHHHHHHhccCccccchhhhhhHHHHHHHH-HHHhhhhcccccccccCCchhhHHH
Q 015847           40 ITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMF-GRALTSVFWGLVADRYGRKPVIIMG  118 (399)
Q Consensus        40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~G~l~dr~Grr~~l~~~  118 (399)
                      ++.+..+.+..++..+..    ..+-.+.+.+.++....+   .+.++=+..-+ +..+..++.+++.++..|.+++-+-
T Consensus        26 ~~kflpl~Ll~f~I~~ny----~~lR~lKDslvv~~~gae---~I~FlK~~~vlP~avif~~iy~kl~~~lt~~~vF~~~   98 (509)
T COG3202          26 LKKFLPLALLFFCILFNY----NLLRSLKDSLVVTRQGAE---SISFLKTWGVLPSAVIFTIIYQKLLNILTREKVFYII   98 (509)
T ss_pred             HHHHHHHHHHHHHHHHHH----HHHHHhhhheEeecCcch---hhHHHHHHHhchHHHHHHHHHHHHHhhcCHHHHHHHH
Confidence            445555555555555543    334445566655532211   15555555555 5667888999999999999998777


Q ss_pred             HHHHHHHHHHHhcc---------ch-----------------------HHHHHHHHHHHhhhccchhh-H-HHHHhhhcc
Q 015847          119 TASVVIFNTLFGLS---------VN-----------------------FWMAVLTRFLLGSLNGLLGP-I-KAYACEIFR  164 (399)
Q Consensus       119 ~~~~~~~~~~~~~~---------~~-----------------------~~~l~~~r~l~G~~~~~~~~-~-~~~~~~~~~  164 (399)
                      ...+....+++++.         ++                       .|...+..++.-+=...... . .....|.+.
T Consensus        99 ~~~F~~fF~LFa~Vi~P~~~~~hp~~~~~~~~~~~~p~~l~~~ili~~~Ws~s~~Yi~aELWgslV~S~lFw~faNeitt  178 (509)
T COG3202          99 LGFFLGFFALFAFVIYPYKDILHPDPEFSRDLFADLPMFLKWFILIVGEWSYSLFYIMAELWGSLVLSLLFWQFANEITT  178 (509)
T ss_pred             HHHHHHHHHHHHHHHhccccccCCCHHHHHHHHhhCCccceeeeEeecchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            77666666666641         11                       13333333333332223222 4 788899999


Q ss_pred             chhhhHHHHHHHHHHHHHHhHHHHhhhhhcCCCCCCCCcccccccccCCcchhhHHHHHHHHHHHHHHHHhcccCCCCCC
Q 015847          165 EEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHN  244 (399)
Q Consensus       165 ~~~r~~~~~~~~~~~~~g~~~~p~i~~~l~~~~~~~~~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~  244 (399)
                      .+|-.|-+++++.+.+++..++..+..++.+.....      -.-+-....+..+.+..+.+++.+....++.+...+++
T Consensus       179 ~~eakRFy~lf~l~~ni~lllsg~~~~~~~k~~~~~------~~~~~~~~~~~~~~vi~~~~~i~~~l~~~~~r~il~~~  252 (509)
T COG3202         179 IEEAKRFYPLFGLGANISLLLSGEVTSWLSKHRDAL------ASEFKDLLLQILFIVIVILGIIAILLYRYINRNVLTDP  252 (509)
T ss_pred             HHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhchhhH------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCc
Confidence            999999999999999999999999998887621100      00000001233334444444444444444322111111


Q ss_pred             C-----CCCccchhhhhhhhhhhhhhhccccCCcccccccccchhHHHHHHHHHHHhhhhhHHHHHHHhhcCCcccCccc
Q 015847          245 D-----DDDSCDVSYDALESASAEVKEEEGREATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLN  319 (399)
Q Consensus       245 ~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  319 (399)
                      .     +++++++             ..+..-....+.+.++|.++...+...+++.....+....-.-....+..  .+
T Consensus       253 ~f~~~~~~kk~~~-------------k~k~~~~~s~k~i~~SkyL~~ial~vl~Y~v~inLvE~~wKs~ik~~~~~--~~  317 (509)
T COG3202         253 LFYLRAKKKKKKK-------------KLKLGLIESFKMILRSKYLGAIALLVLAYGVSINLVEGVWKSGIKELYPT--TN  317 (509)
T ss_pred             chhHHHhcccccc-------------cccCcHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhcCC--hh
Confidence            1     0000000             00011122345567788887766666555544433332221111111000  00


Q ss_pred             cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHH
Q 015847          320 YSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIP  366 (399)
Q Consensus       320 ~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  366 (399)
                      --..-.|-+....++...+...+.++-+.+|.|=.....+.-++..+
T Consensus       318 ~~~~f~~~~~~~tgvv~~v~~~~~~s~~ir~~GW~~~AlitPiv~li  364 (509)
T COG3202         318 EYTAFMGRFQIWTGVVSLVVFLFPGSNLIRRVGWFTGALITPLVMLI  364 (509)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhHHHHHHHHHHHHHH
Confidence            01223344555666665555666788888887755544444333333

>PRK15462 dipeptide/tripeptide permease D; Provisional

Probab=97.64  E-value=0.00096  Score=63.49  Aligned_cols=85  Identities=13%  Similarity=0.079  Sum_probs=70.8

Q ss_pred             chhHHHHHHHHHHHhhhhhHHHHHHHhhcCCcccCccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchhHHHHH
Q 015847          282 WPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERIL-GPIMVARIA  360 (399)
Q Consensus       282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~  360 (399)
                      +.++..........+..++...++|.|+.+.     +|+++.+++.+.+.+.....++. +++|++.||+ |||+.+.++
T Consensus         9 ~~l~~l~~~~~~e~fs~Yg~~~~L~~yL~~~-----lgls~~~a~~i~~~~~~~~~l~~-ligG~LaDRilGrrr~iliG   82 (493)
T PRK15462          9 RAIYYVVALQIWEYFSFYGMRALLILYLTNQ-----LKYDDNHAYELFSAYCSLVYVTP-ILGGFLADKVLGNRMAVMLG   82 (493)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----cCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHccCcHHHHHHH
Confidence            4456666666667777788888999998876     79999999999999998888887 4899999998 999999999


Q ss_pred             HHHHHHHHhHHh
Q 015847          361 GVLTIPLLTSYP  372 (399)
Q Consensus       361 ~~~~~~~~~~~~  372 (399)
                      .++..++.+++.
T Consensus        83 ~il~~lg~lll~   94 (493)
T PRK15462         83 ALLMAIGHVVLG   94 (493)
T ss_pred             HHHHHHHHHHHH
Confidence            999888876654

>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters

Probab=97.46  E-value=0.00081  Score=62.24  Aligned_cols=108  Identities=16%  Similarity=0.213  Sum_probs=82.0

Q ss_pred             hhhHHHHHHHHHHHHHHhccc---------hHHHHHHHHHHHhhhccchhhH-HHHHhhhccch---hhhHHHHHHHHHH
Q 015847          113 PVIIMGTASVVIFNTLFGLSV---------NFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREE---HQALGLSTVSTAW  179 (399)
Q Consensus       113 ~~l~~~~~~~~~~~~~~~~~~---------~~~~l~~~r~l~G~~~~~~~~~-~~~~~~~~~~~---~r~~~~~~~~~~~  179 (399)
                      |++++|.++.++|.++..++.         +.+.++++-.+.++|.|..-|. .++.+|.++++   +|.+.+..+..+.
T Consensus         2 ktI~~g~~~~~~G~~ll~l~~~~~~~~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~~~~~~~F~~fY~~i   81 (372)
T PF00854_consen    2 KTILLGSIVYLLGHVLLTLSAIPPSLPSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDDDSRRDSFFNWFYWGI   81 (372)
T ss_dssp             HHHHHHHHHHHHHHHH--HHHTSSSC------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTTTHHHHHHHHHHHHH
T ss_pred             HhhhHHHHHHHHHHHHhHHHHhcchhhhhHHHHHHHHHHHHHHhccccccccHHHHHHHHhcccchhhhhhhHHHHHHHH
Confidence            567888888888888744431         2357888889999999999885 99999999865   5677888889999


Q ss_pred             HHHHhHHHHhhhhhcCCCCCCCCcccccccccCCcchhhHHHHHHHHHHHHHHHHhc
Q 015847          180 GIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWL  236 (399)
Q Consensus       180 ~~g~~~~p~i~~~l~~~~~~~~~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (399)
                      ++|..+++.+.+++.+                +++|...|.+.++..+++++....-
T Consensus        82 n~G~~~~~~~~~~i~~----------------~~~~~~~f~i~~~~~~~~~~~f~~~  122 (372)
T PF00854_consen   82 NIGSLFSPTLVPYIQQ----------------NYGWFLGFGIPAIGMLLALIVFLSG  122 (372)
T ss_dssp             HHHHHHHHHCCCHHHH----------------CS-HHHHHHHHHHHHHHHHHHHHCC
T ss_pred             hhhhHhhcccchhhcc----------------ccchhhhhhHHHHHHHHHHHHHHhC
Confidence            9999999999999987                5556666677777666665554443

The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.

>PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ]

Probab=97.42  E-value=0.012  Score=54.83  Aligned_cols=72  Identities=17%  Similarity=0.272  Sum_probs=45.4

Q ss_pred             HHHHHHHHHhhccccchhhhHHHHHHH--hccCccccchhhhhhHHHHHHHHHHHhhhhcccccccccCCchhhHHH
Q 015847           44 FSIWIIVLCTALPISSLFPFLYFMIKD--FQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMG  118 (399)
Q Consensus        44 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~dr~Grr~~l~~~  118 (399)
                      ..+.+.+++.++..+.....+|.+.++  -+.|.+|+....++++-.|.=.+   =+.++=...+.|+||||..++-
T Consensus         3 ~lL~~LY~lQGiP~GL~~gsiPflL~~~~~~~sy~q~~~fSla~~PfSlKlL---WaPiVDs~y~~~~GRRKSWiiP   76 (544)
T PF13000_consen    3 ALLVLLYFLQGIPLGLAFGSIPFLLQSMAKKVSYSQQAIFSLASYPFSLKLL---WAPIVDSVYSKRIGRRKSWIIP   76 (544)
T ss_pred             eHHHHHHHHcCcccccccccchhhhccccCCCChhHheeeeeeechhHHHHh---hhhhhhhhcccccCCcchhhhH
Confidence            356678888999888887888988888  78888773322223333333221   1222333445599999876554

This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane

>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]

Probab=97.39  E-value=0.0024  Score=59.43  Aligned_cols=97  Identities=11%  Similarity=0.050  Sum_probs=79.1

Q ss_pred             ccccc-chhHHHHHHHHHHHhhhhhHHHHHHHhhcCCcccCccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHH-hcch
Q 015847          277 SLLKN-WPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERI-LGPI  354 (399)
Q Consensus       277 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~-~~~~  354 (399)
                      ..++. |.++.+...-+.--+.+++....+..|+.....+. +|++.+++..+++.++.-.-+.. .++||++|| +|+|
T Consensus        15 ~~f~~Pr~l~~if~vE~WERFsyYGmraiL~~Yl~~~~~~g-Lg~~~~~A~~l~~~y~slVY~t~-i~GG~laDr~LG~~   92 (498)
T COG3104          15 KFFGQPRGLYLIFFVELWERFSYYGMRAILILYLYYQLGDG-LGFDETHATGLFSAYGSLVYLTP-IIGGWLADRVLGTR   92 (498)
T ss_pred             ccCCCCchHHHHHHHHHHHHHhhhhhHHHHHHHHHHhcccc-CCcChHhhHHHHHHHHHHHHHHH-HHHHHHHHHhcchh
Confidence            34443 45667777777778888889999999988875555 78999999988888877777776 499999999 6999


Q ss_pred             hHHHHHHHHHHHHHhHHhHHH
Q 015847          355 MVARIAGVLTIPLLTSYPYIA  375 (399)
Q Consensus       355 ~~~~~~~~~~~~~~~~~~~~~  375 (399)
                      +.+..+.++.+++.+++....
T Consensus        93 ~tI~lGail~~iGh~~L~~~~  113 (498)
T COG3104          93 RTIVLGAILMAIGHLVLAISS  113 (498)
T ss_pred             HHHHHHHHHHHHHHHHHhccc
Confidence            999999999999999987664

>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age

Probab=97.26  E-value=0.0071  Score=55.52  Aligned_cols=109  Identities=17%  Similarity=0.215  Sum_probs=76.4

Q ss_pred             hhHHHHHHHHHHHhhhhcccccccccCCchhhHHHHHHHHHHH---HHHhccchHHHHHHHHHHHhhhccchhh-HHHHH
Q 015847           84 AGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFN---TLFGLSVNFWMAVLTRFLLGSLNGLLGP-IKAYA  159 (399)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~---~~~~~~~~~~~l~~~r~l~G~~~~~~~~-~~~~~  159 (399)
                      ..+...+|.+|..++.--...+  |+.+-+++.+--++..+..   ...-+.++.|..++.-+..|+.+|...+ ....+
T Consensus       283 Y~~Y~~~YQ~GVFISRSS~~~~--rir~lwils~LQ~~nl~~~~l~s~~~fipsi~ivf~lif~eGLlGGa~YVNtF~~I  360 (402)
T PF02487_consen  283 YRWYQLLYQLGVFISRSSLPFF--RIRRLWILSLLQVINLVFLLLQSWYRFIPSIWIVFVLIFYEGLLGGASYVNTFYRI  360 (402)
T ss_pred             HHHHHHHHHHHHhhhhcceeee--ehhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence            7788888888877776533222  4433233222222222222   2233457889888889999998787776 57788


Q ss_pred             hhhccchhhhHHHHHHHHHHHHHHhHHHHhhhhhc
Q 015847          160 CEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLA  194 (399)
Q Consensus       160 ~~~~~~~~r~~~~~~~~~~~~~g~~~~p~i~~~l~  194 (399)
                      .|..++++|-.++|....+-++|..++.+++-.+-
T Consensus       361 ~~~~~~~~REFslg~vsvsds~GI~lAgll~l~le  395 (402)
T PF02487_consen  361 SEEVPPEDREFSLGAVSVSDSLGILLAGLLGLPLE  395 (402)
T ss_pred             HhcCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence            88899999999999999999999999988886664

The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane

>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins

Probab=97.26  E-value=0.00061  Score=64.22  Aligned_cols=154  Identities=15%  Similarity=0.176  Sum_probs=104.5

Q ss_pred             cCccccchhhhhhHHHHHHHHHHHhhhhcccccccccCCchhhHHHHHHHHHHHHHHhc-c---------chHHHHHHHH
Q 015847           73 IAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGL-S---------VNFWMAVLTR  142 (399)
Q Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~-~---------~~~~~l~~~r  142 (399)
                      .++..      .+.+..+..++..++..+...+--+..-|+++..+.++.++..+.-.. .         ++.+..+.--
T Consensus       252 fs~~f------~~~~~~vg~~~~l~g~~~y~~~~~~~~~R~~~~~t~~~~~~~~l~~~~lv~~~n~~~Gi~d~~f~lgd~  325 (433)
T PF03092_consen  252 FSPSF------YGTLSIVGSIASLLGILLYRKYFSNWSWRRIFVVTTLVSVLASLFDLLLVTRWNLDLGIPDQWFALGDT  325 (433)
T ss_pred             cCHHH------HHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcccEEEEEEEeeeeCcCCeEEEEEhH
Confidence            55555      778888888888888888888777888888888888777665543221 1         1222222333


Q ss_pred             HHHhhhccc-hhhHHHHHhhhccchhhhHHHHHHHHHHHHHHhHHHHhhhhhcCCCCCCCCcccc-cccccCCcchhhHH
Q 015847          143 FLLGSLNGL-LGPIKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSS-ESLFGKFPYFLPCL  220 (399)
Q Consensus       143 ~l~G~~~~~-~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~i~~~l~~~~~~~~~~~gw-~~~f~~~~~~~~~~  220 (399)
                      ++..+..+. ..|...+++|..|+...|+.+++.....++|..++..++..+.+.       ++. +..|  .+.+...+
T Consensus       326 ~l~~~~~~i~~mP~lvl~a~lcP~G~Egt~yall~s~~Nlg~~~s~~lg~~l~~~-------~~vt~~~f--~~l~~lil  396 (433)
T PF03092_consen  326 ILEEVIGMIAFMPSLVLAARLCPKGSEGTVYALLASFSNLGSSVSSTLGAFLMEL-------FGVTRDDF--SNLWLLIL  396 (433)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------cCCCcccc--cchHHHHH
Confidence            555554444 566788999999999999999999999999999999999999873       332 1112  22233334


Q ss_pred             HHHHHHHHHHHHHHhcccCCC
Q 015847          221 CISLFAFGVTIAAFWLPETLH  241 (399)
Q Consensus       221 ~~~~~~~~~~~~~~~~~e~~~  241 (399)
                      +..+..++.+....++|+..+
T Consensus       397 i~~~~~ll~l~ll~lLp~~~~  417 (433)
T PF03092_consen  397 ICSVIQLLPLPLLFLLPPQKR  417 (433)
T ss_pred             HHHHHHHHHHHHHHHcCCCch
Confidence            445555555666667776544

Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).

>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]

Probab=97.26  E-value=0.0016  Score=59.82  Aligned_cols=126  Identities=15%  Similarity=0.160  Sum_probs=74.8

Q ss_pred             HHHHHhccCccccchhhhhhHHHHHHHHHHHhhhhcccccccccCC----chhhHHHHHHHHHH-------HHHHhc-cc
Q 015847           66 FMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGR----KPVIIMGTASVVIF-------NTLFGL-SV  133 (399)
Q Consensus        66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~dr~Gr----r~~l~~~~~~~~~~-------~~~~~~-~~  133 (399)
                      ...+-.|.+..+      .-++..+...+..+|.++.|.++||+-|    -....+..+..+.+       .++... ..
T Consensus       273 ~~~~~~~~~~~~------~~ifg~vt~~~G~lGvl~Ggiisd~~~~~~~~~~~~~~~q~~~~~g~~~s~~~L~~~~~~~~  346 (493)
T KOG1330|consen  273 YSYELIGFDHNA------TLIFGGVTCAGGSLGVLFGGIISDKLSRIFPNSGTLRASQLSAALGAPLSIPFLFLFPAFTS  346 (493)
T ss_pred             HHHHHhCCcccc------chhhhhHHHhhchhhheehHHHHHHHHHhcccccchhHHHHHHhhhhhHHHHHHHHHHhhhh
Confidence            333444555555      5677777888888999999999999432    11222222222111       111111 22


Q ss_pred             hHHHHHHHHHHHhhhccchhh--HHHHHhhhccchhhhHHHHHHHH-HHHHHHhHHHHhhhhhcCCC
Q 015847          134 NFWMAVLTRFLLGSLNGLLGP--IKAYACEIFREEHQALGLSTVST-AWGIGLIIGPALGGFLAQPA  197 (399)
Q Consensus       134 ~~~~l~~~r~l~G~~~~~~~~--~~~~~~~~~~~~~r~~~~~~~~~-~~~~g~~~~p~i~~~l~~~~  197 (399)
                      +...+.+..++.|........  ..-+..|..|+++|..++++-.. ....|..-+|.+-|.+.++.
T Consensus       347 ~s~~~~~il~~~g~~~~~~~~a~n~~i~l~vV~p~~Rt~a~a~~~~~~h~fgd~~~p~ivGilsd~l  413 (493)
T KOG1330|consen  347 SSMIFGLILFLVGETISWFNWATNNPIFLEVVPPSRRTTAYALDTVFEHIFGDAASPYIVGILSDKL  413 (493)
T ss_pred             HHHHHHHHHHHHHHHHHhcccccccceeeEecCcccccHHHHHHHHHHHHhccCCCcceehhHHHHh
Confidence            333333444555654333322  36678899999999999999754 44556666676999998854

>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=97.04  E-value=0.00075  Score=61.68  Aligned_cols=132  Identities=18%  Similarity=0.107  Sum_probs=88.6

Q ss_pred             cchhhhHHHHHHHhccCccccchhhhhhHHHHHHHHHHHhhhhcccccccccCC-chhhHHHHHHHHHHHHHHh-c---c
Q 015847           58 SSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGR-KPVIIMGTASVVIFNTLFG-L---S  132 (399)
Q Consensus        58 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~dr~Gr-r~~l~~~~~~~~~~~~~~~-~---~  132 (399)
                      +.....+......-|.+...      .|++.....++..+++.+.|.+.||... |.++++......++..... .   .
T Consensus       283 ~~l~~~l~~~l~~sgY~~~~------aG~ig~l~iv~Gmlga~~~gii~Dktk~fk~~~~v~~~~~~v~~~~l~~~t~~~  356 (480)
T KOG2563|consen  283 NSLSTLLNLALCPSGYEGVF------AGYIGALMIVAGMLGALASGIIADKTKKFKLTTLVLYLFALVGTLMLLTCTLFL  356 (480)
T ss_pred             HHHHHHhhhccccccCCccc------cchhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence            33333343333445666656      8999999999999999999999999874 5555555555555532221 1   1


Q ss_pred             chHHHHHHHHHHHhhhccchhhH-HHHHhhhccchhhhHHHHHHHHHHHHHHhHHHHhhhhhcC
Q 015847          133 VNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQ  195 (399)
Q Consensus       133 ~~~~~l~~~r~l~G~~~~~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~i~~~l~~  195 (399)
                      .+.+.++..-.+.|++.....|. .-+-.|..-|..-+...|+.+...++-+.+-..+-+...+
T Consensus       357 ~~~viv~~t~~~~g~~~~~~~Pig~ElgvE~TyPv~E~tSsGll~~~gq~f~~~~~~~~~~~~~  420 (480)
T KOG2563|consen  357 GDSVIVFTTCGLLGFFGTGYLPIGFELGVETTYPVAEGTSSGLLNLSGQIFGVILVFIMGILAE  420 (480)
T ss_pred             CceEehhhhHHHHHHhhcCCCCcceeeeeeeccccCCcccceeEEeehhHHHHHHHHHHHHHhh
Confidence            23345555667777776666665 7777777766666677888888777777777777777776

>TIGR00806 rfc RFC reduced folate carrier

Probab=96.97  E-value=0.02  Score=53.76  Aligned_cols=63  Identities=13%  Similarity=0.094  Sum_probs=55.1

Q ss_pred             cccchhh-HHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHhHHhHHHHHHHHH
Q 015847          318 LNYSTQM-VGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIAMLSGFG  381 (399)
Q Consensus       318 ~g~~~~~-~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  381 (399)
                      +|++..+ .|.+.+....+..+..+ .++++.||+|.|+++.++.+.-.+...+.++.++.....
T Consensus        56 lglT~~qv~G~I~s~F~ysYal~qI-p~GlLaDrlG~K~vL~l~~l~Wsl~t~L~~fa~Sl~~L~  119 (511)
T TIGR00806        56 LNFTEETVTNEIIPVLPYSHLAVLV-PVFLLTDYLRYKPVLVLQALSFVCVWLLLLLGTSVWHMQ  119 (511)
T ss_pred             cCCCHHHhcchHHHHHHHHHHHHHH-HHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8999999 99999999999999995 889999999999999999999888888888766544433

Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.

>KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism]

Probab=96.89  E-value=0.023  Score=55.29  Aligned_cols=159  Identities=13%  Similarity=0.071  Sum_probs=110.8

Q ss_pred             ChhHHHHHHHHHHHhhccc-cchhhhHHHHHHHhccCccccchhhhhhHHHHHHHHHHHhhhhccccccccc-CCchhhH
Q 015847           39 PITELFSIWIIVLCTALPI-SSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRY-GRKPVII  116 (399)
Q Consensus        39 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~dr~-Grr~~l~  116 (399)
                      .|+....+.....+.-... +.....+.++.++++.+...      +.-..+.+........+..+.++|-| ||-+++.
T Consensus        35 ~~~s~~~il~~e~~e~~a~~g~~~nlv~ylt~~~~~~~~~------aa~~v~~f~G~~~~~~l~g~~laD~f~gry~tI~  108 (571)
T KOG1237|consen   35 GWLSAPFILGNEVLERLAFFGLVSNLVTYLTLELHASGGG------AANNVNAFGGTQFLLPLLGAFLADSFLGRYFTIN  108 (571)
T ss_pred             hhHhHHHHHHHHHHHHHhHhcchhHHHHHHHHHhccchHH------HHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHH
Confidence            3444443333333333333 34567777888999998877      77777888888888889999999976 8889999


Q ss_pred             HHHHHHHHHHHHHhccc----------------------h---HHHHHHHHHHHhhhccchhhH-HHHHhhhcc---chh
Q 015847          117 MGTASVVIFNTLFGLSV----------------------N---FWMAVLTRFLLGSLNGLLGPI-KAYACEIFR---EEH  167 (399)
Q Consensus       117 ~~~~~~~~~~~~~~~~~----------------------~---~~~l~~~r~l~G~~~~~~~~~-~~~~~~~~~---~~~  167 (399)
                      ++.++..++..+..++.                      +   ...++...-+..+|.|..-|+ .++-+|.++   +++
T Consensus       109 ~~s~i~~~G~~~lt~~a~~~~l~p~~~~~~~~~~~c~~~s~~q~~~~~~~l~lia~G~gg~r~~~~~fGadQfd~~~~~~  188 (571)
T KOG1237|consen  109 IGSLISLLGLFGLTLSAMIPALLPFMCKFKPGGNVCESPSKLQLAVLYGALYLIALGAGGIRPCLLAFGADQFDELDPVE  188 (571)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhcCCccccCCCCCCcccCcchHHHHHHHHHHHHheeccCCCCCcchhhcccccCccCcch
Confidence            99888888765444311                      1   124555556666788887786 889999998   322


Q ss_pred             -h--hHHHHHHHHHHHHHHhHHHHhhhhhcCCCCCCCCcccccccc
Q 015847          168 -Q--ALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLF  210 (399)
Q Consensus       168 -r--~~~~~~~~~~~~~g~~~~p~i~~~l~~~~~~~~~~~gw~~~f  210 (399)
                       +  ..-+..+....++|..++-.+-.+..+       ..||...|
T Consensus       189 ~~~~~~fFnW~yf~~~~g~l~a~t~~vyiq~-------~~~w~lgf  227 (571)
T KOG1237|consen  189 VKGIPSFFNWFYFSQNGGALLAQTVLVYIQD-------NVGWKLGF  227 (571)
T ss_pred             hhCcccchhHHHHHHHHHHHHHHHHHHhhhh-------cccceeec
Confidence             2  356677788889999999888888876       56675555

>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1

Probab=96.82  E-value=0.0078  Score=56.17  Aligned_cols=130  Identities=8%  Similarity=-0.103  Sum_probs=92.4

Q ss_pred             hhhhHHHHHHHhccCccccchhhhhhHHHHHHHHHHHhhhhcccccccccCCchhhHHHHHHHHHHHHHHh---cc---c
Q 015847           60 LFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFG---LS---V  133 (399)
Q Consensus        60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~---~~---~  133 (399)
                      ....+..+...-|+++..      +|..-+...+....+.....++.+|+|..|.=.++.........++.   +.   +
T Consensus       277 f~~lmt~yl~~~G~s~~~------igi~R~~gav~Gl~gT~~~p~l~~riGlvr~G~~~l~~q~~~L~~~v~~~~~~~~~  350 (432)
T PF06963_consen  277 FGGLMTAYLKSQGYSPSV------IGIFRGLGAVFGLLGTWVYPWLMKRIGLVRAGLWSLWWQWVCLALCVVSFWAPGSP  350 (432)
T ss_pred             CcHHHHHHHHHCCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence            355555566666999999      99999999999999999999999999988887777664443332222   11   1


Q ss_pred             ----hHHHHHHHHHHHhhh-ccchhhHHHHHhhhccchhhhHHHHHHHHHHHHHHhHHHHhhhhhcC
Q 015847          134 ----NFWMAVLTRFLLGSL-NGLLGPIKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQ  195 (399)
Q Consensus       134 ----~~~~l~~~r~l~G~~-~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~i~~~l~~  195 (399)
                          +...++.+-.+.=+| .+.-....-++.|..|+++||...|.-....++-..+...++-.+.+
T Consensus       351 ~~~~s~~~l~~gi~~SR~GLW~fDL~~~qi~Qe~V~~~~Rg~v~gvq~sl~~lf~ll~~~~~ii~~~  417 (432)
T PF06963_consen  351 FSSISAYLLLGGIALSRIGLWSFDLAVTQIMQENVPESERGAVSGVQNSLQSLFELLSFVLTIIFPR  417 (432)
T ss_pred             chhhHHHHHHHHHHHHHHHHHhhhHHHHHhhcccCCHHHhhHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence                222333333333444 22333347888999999999999999999999988888777655544

It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane

>KOG3762 consensus Predicted transporter [General function prediction only]

Probab=96.69  E-value=0.00083  Score=62.73  Aligned_cols=85  Identities=22%  Similarity=0.396  Sum_probs=67.4

Q ss_pred             HHHHHHHHHHHhhccccchhhhHHHHHHHhccCccccchhhhhhHHHHHHHHHHHhhhhcccccccccCCchhhHHH-HH
Q 015847           42 ELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMG-TA  120 (399)
Q Consensus        42 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~dr~Grr~~l~~~-~~  120 (399)
                      .++.+=+..+..+...+.+.|.++.+.+++|+++.+      .|.+...-.+..+++.|++|.++||+-+||.++++ .+
T Consensus        12 ~l~~~k~f~~~~~~~~g~l~pll~vy~kQLGl~p~~------~Gtl~g~~P~v~~L~~P~~g~~Adr~r~~r~lllgsl~   85 (618)
T KOG3762|consen   12 ALIVAKLFYLFFGARFGSLFPLLAVYFKQLGLNPAV------VGTLTGTLPLVEFLAAPLWGFLADRYRKRRPLLLGSLL   85 (618)
T ss_pred             hhheeeeeeeeeeecccccchHHHHHHHHcCCCHHH------hhhhhhHHHHHHHHhHHHHHHHHHHHHhcCchhHHHHH
Confidence            344444445556677788899999999999999999      99999999999999999999999999877666655 45


Q ss_pred             HHHHHHHHHhcc
Q 015847          121 SVVIFNTLFGLS  132 (399)
Q Consensus       121 ~~~~~~~~~~~~  132 (399)
                      ....+.++..+.
T Consensus        86 ~~v~a~fll~fv   97 (618)
T KOG3762|consen   86 LSVTATFLLVFV   97 (618)
T ss_pred             HHHHHHHheeec
Confidence            555566665553

>PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters

Probab=96.63  E-value=0.026  Score=39.22  Aligned_cols=74  Identities=20%  Similarity=0.165  Sum_probs=59.3

Q ss_pred             hhhhHHHHHHHhhcCCcccCccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHhHHhHHHH
Q 015847          297 HDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIAM  376 (399)
Q Consensus       297 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  376 (399)
                      .-+.+...+|...++      .++|..+.|++-+.+.++..++.+ ...++.++.++++.+..+.+...+.....++.++
T Consensus         7 gRFayTplLP~M~~~------~~ls~~~ag~lasaNy~GYL~GAl-~~~~~~~~~~~~~~~~~~l~~~~~~~~~ma~~~~   79 (85)
T PF06779_consen    7 GRFAYTPLLPLMQAD------GGLSLSQAGWLASANYLGYLVGAL-LASRLPRHSRPRRLLRAGLLLTVLSTAAMALTHS   79 (85)
T ss_pred             HHHHHHhHhHHHHHh------cCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            344566677766555      799999999999999999999995 7788888777888888898888888888776654


Q ss_pred             H
Q 015847          377 L  377 (399)
Q Consensus       377 ~  377 (399)
                      .
T Consensus        80 ~   80 (85)
T PF06779_consen   80 F   80 (85)
T ss_pred             h
Confidence            3

Note that many members are hypothetical proteins.

>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]

Probab=96.59  E-value=0.0039  Score=58.47  Aligned_cols=155  Identities=10%  Similarity=0.149  Sum_probs=88.4

Q ss_pred             ChhHHHHHHHHHHHhhccccchhhhH-HHHHHHhccCccccchhhhhhHHHHHHHHHHHhhhhcccccc-cccCCchhhH
Q 015847           39 PITELFSIWIIVLCTALPISSLFPFL-YFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVA-DRYGRKPVII  116 (399)
Q Consensus        39 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~-dr~Grr~~l~  116 (399)
                      .+...+.+....+...+......... +.....++.+.++  +..+-|...++..+-.....+..+... -++.+|+.+.
T Consensus       260 d~~~~~vc~~~~~~~~~~~~~iet~~~~~~m~~y~w~~~~--av~~~gi~~~~~g~ls~~~~l~~~f~~l~~i~~r~~~~  337 (488)
T KOG2325|consen  260 DWVAVLVCIFLRFVVNFIATTIETLSSALTMVMYGWTGSE--AVLYNGITLSISGILSVILLLLYIFTRLGKIDKRRIIL  337 (488)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHhccccch--HHHhhhhHHHHHHHHHHHHHHHHHHHHhhhhccceeee
Confidence            34444444444444444333322322 3444556766655  222244444444444444444444433 3445566666


Q ss_pred             HHHHHHHHHHHHHhcc-------------------------------chHHHHHHHH-HHHhhhccchhh-HHHHHhhhc
Q 015847          117 MGTASVVIFNTLFGLS-------------------------------VNFWMAVLTR-FLLGSLNGLLGP-IKAYACEIF  163 (399)
Q Consensus       117 ~~~~~~~~~~~~~~~~-------------------------------~~~~~l~~~r-~l~G~~~~~~~~-~~~~~~~~~  163 (399)
                      .+.++........-+.                               .+.+.+++.+ ++.|.+.-.... ..++-+|..
T Consensus       338 ~g~l~~f~~~~i~~yp~~~~s~pv~~~~~~~~~~~~~~y~wc~~~~~v~~~~~l~~~i~~~g~~~P~~~~~~~tlySkiL  417 (488)
T KOG2325|consen  338 LGFLIFFLSYYIFTYPWGFYSGPVQPYNTTYAGCDFEEYSWCDTTTAVPLILYLISFIVVFGIAFPFISTALDTLYSKIL  417 (488)
T ss_pred             ehHHHHHHhhheeeeeccccccccccccccccCcCcccchhhccCcccChhhheeehhheeccccccccchHHHHHHHHh
Confidence            6644444433332210                               1223334443 455665555444 488999999


Q ss_pred             cchhhhHHHHHHHHHHHHHHhHHHHhhhhhcC
Q 015847          164 REEHQALGLSTVSTAWGIGLIIGPALGGFLAQ  195 (399)
Q Consensus       164 ~~~~r~~~~~~~~~~~~~g~~~~p~i~~~l~~  195 (399)
                      .|++++...+.+......+..+||++......
T Consensus       418 gp~~q~~~qg~~~~~~s~~~~~~~~~~t~~~~  449 (488)
T KOG2325|consen  418 GPRDQGTMQGVFSISGSIARVVGPIFSTAIFT  449 (488)
T ss_pred             CCccccceeEEEEeccchhhhhhHHHHhhhHH
Confidence            99999999999999999999999999988877

>KOG3097 consensus Predicted membrane protein [Function unknown]

Probab=96.53  E-value=0.5  Score=41.91  Aligned_cols=66  Identities=17%  Similarity=0.207  Sum_probs=47.5

Q ss_pred             hhhhcccccccccCCchhhHHHHHHHHHHHHHHhccchHHHHHHHHHHHhhhccchhhH-HHHHhhhc
Q 015847           97 LTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIF  163 (399)
Q Consensus        97 ~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~-~~~~~~~~  163 (399)
                      ..+.+.+.+.+++|-|+++.++...+...... -+-+.+..++-.-...|++.+..... .+++++.-
T Consensus        73 ~s~m~~~~~Ir~~g~K~tm~lav~~Y~lyiA~-Nl~pr~~tlVPa~~~~G~aa~p~W~SkgtYlT~~g  139 (390)
T KOG3097|consen   73 DSSMFMPLLIRFLGTKWTMVLAVFPYALYIAA-NLEPRYETLVPAGLVLGMAAGPIWASKGTYLTPMG  139 (390)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh-hcchhHHhhccHHHhhccccccccccCcceecHHH
Confidence            44445558889999999999988877654432 23467788888889999988876664 55655544

>PRK03612 spermidine synthase; Provisional

Probab=96.28  E-value=0.15  Score=49.37  Aligned_cols=121  Identities=14%  Similarity=0.116  Sum_probs=69.5

Q ss_pred             HHHHhccCccccchhhhhhHHHHHHHHHHHhhhhcccccccccCCchhhHHHHHHHHH---HH-HHHh---ccchH-HHH
Q 015847           67 MIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVI---FN-TLFG---LSVNF-WMA  138 (399)
Q Consensus        67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~---~~-~~~~---~~~~~-~~l  138 (399)
                      +..-+|-+..+      .+.+.+++..|..+|+...+++.++--|+. ..+-..+..+   +. ++..   +.... ..+
T Consensus        41 l~~~~G~s~~~------~~~ii~~fl~glalGs~l~~~~~~~~~~~~-~~~e~~i~l~~~~~~~ll~~~~~~~~~~~~~~  113 (521)
T PRK03612         41 ASYLLGDSVTQ------FSTVIGLMLFAMGVGALLSKYLLRDAAAGF-VAVELLLALLGGLSALILYAAFAFQGLSRLLL  113 (521)
T ss_pred             HHHHhCchHHH------HHHHHHHHHHHHHHHHHHHHhhhhhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33456777777      899999999999999999888764322222 1111111111   11 1111   11111 112


Q ss_pred             HHHHHHHhhhccchhhH-HHHHhhhccchhhhHHHHHHHHHHHHHHhHHHHhhhhhcC
Q 015847          139 VLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQ  195 (399)
Q Consensus       139 ~~~r~l~G~~~~~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~i~~~l~~  195 (399)
                      +...++.++..|+..|. ..+..+ ...++-++..|.......+|.++|.++.+++.-
T Consensus       114 ~~~~~~~~~l~G~~~Pl~~~~~~~-~~~~~~g~~~g~ly~~ntlGa~~G~l~~~~vLl  170 (521)
T PRK03612        114 YVLVLLIGLLIGMEIPLLMRILQR-IRDQHLGHNVATVLAADYLGALVGGLAFPFLLL  170 (521)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHh-ccccchhhhhhhhHhHHhHHHHHHHHHHHHHHH
Confidence            23334556666666664 333333 222234567788888889999999998887763

>KOG3098 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.98  E-value=0.1  Score=48.93  Aligned_cols=143  Identities=15%  Similarity=0.243  Sum_probs=90.6

Q ss_pred             HHHHHHHHHHhhccccchhhhHHHHH---HHhccCccccchhhhhhHHHHHHHHHHHhhhhccccccc---ccCCchhhH
Q 015847           43 LFSIWIIVLCTALPISSLFPFLYFMI---KDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVAD---RYGRKPVII  116 (399)
Q Consensus        43 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~d---r~Grr~~l~  116 (399)
                      ++.+....+..+..........|.-.   +..+.+...     +.+.......++..++..+.+.+++   ++||++.+.
T Consensus       242 ml~L~~~f~~tG~~~Sf~~~iypt~i~ft~~~~~n~~~-----~~ai~~~~~g~g~v~~g~~~~~l~~rir~fg~~~~~~  316 (461)
T KOG3098|consen  242 MLLLFPFFFYTGLETSFWISIYPTCISFTRKLGSNTTY-----LIAIYSIGIGLGEVIGGLDFSILSKRIRGFGRKPTVL  316 (461)
T ss_pred             HHHHHHHHHHHHHHHHHHHhccchhhhhhhhccCcchh-----HHHHHHHHHhHHHHHHHHHHHHHhhhhhhcccCcchh
Confidence            33444445555554444444444222   222222221     1444444455555666666666665   578999999


Q ss_pred             HHHHHHHHHHHHHhcc------------------chHHHHHHHHHHHhhhccchhhH-HHHHhhhccchhhhHHHHHHHH
Q 015847          117 MGTASVVIFNTLFGLS------------------VNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVST  177 (399)
Q Consensus       117 ~~~~~~~~~~~~~~~~------------------~~~~~l~~~r~l~G~~~~~~~~~-~~~~~~~~~~~~r~~~~~~~~~  177 (399)
                      ++.++..+.+++.-..                  ++.....+.-++.|++-+..... +.++.+.. +++|..+.++...
T Consensus       317 ~~~~~~~~~~~li~l~~p~dap~~~t~~~~~~~~~~~~~~~ii~~l~G~~D~~~~t~~~~ii~~~~-~~~~~~~fsi~kf  395 (461)
T KOG3098|consen  317 IGIIIHLIGFLLIHLSFPNDAPLRPTDSPPLLFTPSYYLALIIGFLLGFGDACFNTQRYVIIALLY-PDDRAQAFSLFKF  395 (461)
T ss_pred             HHHHHHHHHHHHHhccccccCCCCCCcccccccccchhHHHHHHHHHhhHHHHHHHHHHHHHHHHh-cCchHHHHHHHHH
Confidence            9998888887776542                  24556677778999998887775 88888888 6788888888877


Q ss_pred             HHHHHHhHHHHhhh
Q 015847          178 AWGIGLIIGPALGG  191 (399)
Q Consensus       178 ~~~~g~~~~p~i~~  191 (399)
                      -..++..++-....
T Consensus       396 yq~~~s~v~~f~~~  409 (461)
T KOG3098|consen  396 YQSVASCVAFFFSP  409 (461)
T ss_pred             HHHHHHHHHhhhhh
Confidence            77777765544443

>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function

Probab=95.95  E-value=0.24  Score=44.65  Aligned_cols=52  Identities=12%  Similarity=0.031  Sum_probs=45.3

Q ss_pred             cccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHhH
Q 015847          318 LNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTS  370 (399)
Q Consensus       318 ~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  370 (399)
                      +|++..+++.++........+.+. +.|.+.||+|||+..+..+++..++.+.
T Consensus        64 yg~~~~qIa~Lf~~Gf~Ss~i~g~-~~G~laD~~Grk~~cl~~cily~~scl~  115 (354)
T PF05631_consen   64 YGFSEHQIAILFVAGFASSAIFGT-FVGSLADRYGRKKACLLFCILYSLSCLT  115 (354)
T ss_pred             cCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHhcCchHHHHHHHHHHHHHHHH
Confidence            799999999999888888888874 7899999999999998888888887764

>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT)

Probab=95.95  E-value=0.1  Score=49.15  Aligned_cols=109  Identities=13%  Similarity=0.027  Sum_probs=74.4

Q ss_pred             hhHHHHHHHHHHHhhhhcccccccccCCc-hhhHHHHHH---HHHHHHHHhc---------cchHHHHHHHHHHHhhhcc
Q 015847           84 AGYVGSSFMFGRALTSVFWGLVADRYGRK-PVIIMGTAS---VVIFNTLFGL---------SVNFWMAVLTRFLLGSLNG  150 (399)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~G~l~dr~Grr-~~l~~~~~~---~~~~~~~~~~---------~~~~~~l~~~r~l~G~~~~  150 (399)
                      .-.....+.++-.+|..+..+.. .-++| +.+.+..++   +....++|..         -++-+..++..++.|+.+|
T Consensus       309 ~~i~~~~fNvgD~vGR~~~~~~~-~p~~~~~~l~i~s~~R~iFIPlf~lcn~~~~~~~p~~~~~d~~~~~~~~l~gltnG  387 (437)
T TIGR00939       309 PIICFLLFNLFDWLGRSLTSKFM-WPDEDSRWLPILSFLRVLFIPLFLLCNYPQRSRLPVFFPGDAYFIILMLLFGFSNG  387 (437)
T ss_pred             HHHHHHHHHHHHHHHhhhhheeE-eeCCCccchHHHHHHHHHHHHHHHHhcCCccccCCeeecccHHHHHHHHHHHHhhh
Confidence            56777888888888887654431 11222 133333333   3333333332         2456667777899999999


Q ss_pred             chhhH-HHHHhhhccchhhhHHHHHHHHHHHHHHhHHHHhhhhh
Q 015847          151 LLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFL  193 (399)
Q Consensus       151 ~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~i~~~l  193 (399)
                      ..... ..+..+..++++|..+-.+...+..+|..+|..++-.+
T Consensus       388 y~~s~~m~~~p~~v~~~e~e~aG~~~~~~l~~Gl~~Gs~l~~~~  431 (437)
T TIGR00939       388 YLGSLSMCLAPRQVDPHEREVAGALMVIFLLVGLALGAVLSFLF  431 (437)
T ss_pred             HHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            98774 88888889999999998888999999998888776443

>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs)

Probab=95.60  E-value=0.0032  Score=60.87  Aligned_cols=148  Identities=14%  Similarity=0.241  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHhhccccchhhhHH-HHHHHhccCccccchhhhhhHHHHHHHH-HHHhhhhcccccccccC--CchhhHHH
Q 015847           43 LFSIWIIVLCTALPISSLFPFLY-FMIKDFQIAKREEDIGSYAGYVGSSFMF-GRALTSVFWGLVADRYG--RKPVIIMG  118 (399)
Q Consensus        43 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~G~l~dr~G--rr~~l~~~  118 (399)
                      +....++..........+..+.| +++.+|+.++++      .+++..+..+ +.++|.+++|++..|+.  .|+.+...
T Consensus       307 f~~~~la~~~~~~~~~G~~tF~pKylE~QF~~sas~------A~~l~G~v~ip~~~~G~llGG~ivkk~kl~~~~~~~~~  380 (539)
T PF03137_consen  307 FMCLILAGVFESFIVSGFATFLPKYLESQFGLSASQ------ASLLTGIVSIPGAALGILLGGYIVKKFKLSARGAAKFC  380 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHH------HHHHHhhhhcchhheehheEEEEEEEecCcHHHHHHHH
Confidence            33455666666777777888888 666789999988      7777766555 66788899999999875  45555444


Q ss_pred             HHHHHHHHHHHh---c--c-------------------------------------------------chHHHHHHHHHH
Q 015847          119 TASVVIFNTLFG---L--S-------------------------------------------------VNFWMAVLTRFL  144 (399)
Q Consensus       119 ~~~~~~~~~~~~---~--~-------------------------------------------------~~~~~l~~~r~l  144 (399)
                      .+...++.++..   +  +                                                 +.+..+++..++
T Consensus       381 ~v~~~v~~~~~~~~~~~~C~~~~~aGv~~~y~~~~~~~~~~~~~~~Cn~~~~~~~~~a~~G~C~~~C~~~~~~Fl~~~~~  460 (539)
T PF03137_consen  381 IVVSIVSVILYSPLFFLGCPNPPIAGVTVPYHNSTSSSPSCNLTCSCNSCCSSGNGSATPGKCPSDCCNKLIPFLILLFI  460 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHeecCCCCceeeecCccccccCCCCCCCCCCCCCCccCCCcccccCCCcCcccccccHHHHHHHHH
Confidence            444444333211   0  0                                                 011222233333


Q ss_pred             Hhhhccc-hhhHHHHHhhhccchhhhHHHHHHHH-HHHHHHhHHHHhhhhhcCC
Q 015847          145 LGSLNGL-LGPIKAYACEIFREEHQALGLSTVST-AWGIGLIIGPALGGFLAQP  196 (399)
Q Consensus       145 ~G~~~~~-~~~~~~~~~~~~~~~~r~~~~~~~~~-~~~~g~~~~p~i~~~l~~~  196 (399)
                      .-+..+. ..|....+-+.+++++|..++|+... .-.+|.+=||++-|.+.|.
T Consensus       461 ~~~~~~~~~~p~~~i~LR~V~~~~rs~AlGv~~~~~rllg~IPgPIifG~iiD~  514 (539)
T PF03137_consen  461 LSFFTFMSQVPSTLITLRCVPPEQRSFALGVQWLIIRLLGFIPGPIIFGAIIDS  514 (539)
T ss_dssp             ------------------------------------------------------
T ss_pred             HHHHHHhcccchheeeeccCChhhcchhhhHHHHHHHhhcCcchHHHHhHHHhh
Confidence            3232333 34456666788999999999999855 4557788899999999983

Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.

>KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism]

Probab=95.48  E-value=2.1  Score=39.55  Aligned_cols=122  Identities=14%  Similarity=0.148  Sum_probs=59.1

Q ss_pred             HHHHHHHHHHHhhccccchhhhHHHHHHHhccCccccchhhhhhHHHHHHHHHHHhhhhcccccccccCCchhhHHHHHH
Q 015847           42 ELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTAS  121 (399)
Q Consensus        42 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~  121 (399)
                      ..+..++..+......+......+++.+++--+..+   ............+...+....--.+.-|. |+++.......
T Consensus        19 v~~i~~llGiG~LlpWN~fiTa~~y~~~~~~~~~~~---~~F~~~~~~~a~i~~ll~~~~n~~~~~~~-~~~~~~~l~~~   94 (406)
T KOG1479|consen   19 VYLIFLLLGIGTLLPWNMFITASDYYYYRFPGYHNS---KNFTSSYTLAAQIPLLLFNLLNAFLNTRL-RTRVGYLLSLI   94 (406)
T ss_pred             HHHHHHHHhcccccchHhhhccHHHHHhhcCCCchH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence            334444455555567778888888887776443332   11233444444445555555555566662 22222211222


Q ss_pred             HHHHHHHHhcc---------chHHHHHHHHHHHhhhccchhhH-HHHHhhhccchhh
Q 015847          122 VVIFNTLFGLS---------VNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQ  168 (399)
Q Consensus       122 ~~~~~~~~~~~---------~~~~~l~~~r~l~G~~~~~~~~~-~~~~~~~~~~~~r  168 (399)
                      ..+..+.+.++         ..+...++.-.+.+.+.|..... +...+ .+|+|.-
T Consensus        95 ~il~i~~l~~~~v~~~~~~~~ff~vt~~~vv~~~~a~a~~qgs~~G~a~-~~P~~yt  150 (406)
T KOG1479|consen   95 AILFIVTLDLALVKTDTWTNGFFLVTLIIVVLLNLANAVVQGSLYGLAG-LFPSEYT  150 (406)
T ss_pred             HHHHHHHHHHHhhccCCccchhHHHHHHHHHHHhhhhhhhccchhhhhh-cCCHHHH
Confidence            22122222221         23445555566667776666554 44444 4455543

>PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS)

Probab=95.46  E-value=0.043  Score=46.80  Aligned_cols=106  Identities=12%  Similarity=0.025  Sum_probs=50.7

Q ss_pred             hhhhHHHHHHHHHHHHHHhHHHHhhhhhcCCCCCCCCcccccccccCCcchhhHHHHHHHHHHHHHHHHhcccCCC-CCC
Q 015847          166 EHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLH-RHN  244 (399)
Q Consensus       166 ~~r~~~~~~~~~~~~~g~~~~p~i~~~l~~~~~~~~~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~-~~~  244 (399)
                      |+|+........+.++|.++.-..--.-.+.          +. ..+-.|+..+.+.+++.++.++.+..+-+.-+ ..+
T Consensus         2 k~K~~~s~~n~~gf~iG~ii~~ipF~~~~~~----------~~-~~~~~W~~I~si~~lL~~IpLIly~ifGk~fd~~~~   70 (267)
T PF07672_consen    2 KKKSILSQFNPWGFNIGTIIVNIPFLISSSV----------VI-ALTNNWQWILSIFILLIFIPLILYIIFGKNFDIYSP   70 (267)
T ss_pred             CccceeeeeccccchhhHHHHHhhHHhcchH----------HH-HHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCc
Confidence            4555555555667777776654332111010          00 11334666667777666665555544422211 111


Q ss_pred             CCCCccchhhhhhhhhhhhhhhccccCCcccccccccchhHHHHHHHHHHHh
Q 015847          245 DDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKNWPLMSSIIVYCVFSL  296 (399)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  296 (399)
                      ++++++.+              .....+....+.+|++..|...+.+.....
T Consensus        71 ~~k~~k~~--------------~~~~~~~s~~~~LK~K~tw~w~~~Yg~wLv  108 (267)
T PF07672_consen   71 KEKQEKEN--------------STLSKKPSYKSILKEKETWKWILIYGIWLV  108 (267)
T ss_pred             cccccccc--------------ccccccchHHHHHccchHHHHHHHHHHHhe
Confidence            10110000              011123466788899888877766665443

>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT)

Probab=95.42  E-value=1.7  Score=41.08  Aligned_cols=51  Identities=18%  Similarity=0.146  Sum_probs=30.9

Q ss_pred             hHHHHHHHHHHHhhhccchhhH-HHHHhhhccchhhhHHHHHHHHHHHHHHhHHHHh
Q 015847          134 NFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPAL  189 (399)
Q Consensus       134 ~~~~l~~~r~l~G~~~~~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~i  189 (399)
                      .++..++.-++.|++.+..... .++.+ .+|++.    ++.+..+.+++++++.++
T Consensus       105 ~f~~~~~~v~~~g~~~~~~q~s~~gla~-~fp~~~----~~a~~~G~g~aGv~~s~~  156 (437)
T TIGR00939       105 FFVTTMASVVIINSGMALLQGSLFGLAG-VFPSTY----SSAVMSGQGLAGVLTSLA  156 (437)
T ss_pred             HHHHHHHHHHHHHhhhhhhcccchhhcc-cCCHHH----HHHHHhcchhHHHHHHHH
Confidence            4556666667788887777765 55555 666543    444555556666555544

>TIGR00805 oat sodium-independent organic anion transporter

Probab=94.72  E-value=0.074  Score=52.89  Aligned_cols=79  Identities=11%  Similarity=0.190  Sum_probs=56.7

Q ss_pred             HHHHHHHHHHhhccccchhhhHHHH-HHHhccCccccchhhhhhHHHHHHHH-HHHhhhhcccccccccCC--chhhHHH
Q 015847           43 LFSIWIIVLCTALPISSLFPFLYFM-IKDFQIAKREEDIGSYAGYVGSSFMF-GRALTSVFWGLVADRYGR--KPVIIMG  118 (399)
Q Consensus        43 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~G~l~dr~Gr--r~~l~~~  118 (399)
                      ++...+..++..........++|.+ .+++|.+..+      .+++.+...+ +.+++.++.|+++||+++  |+.+.++
T Consensus       332 f~~~~l~~~~~~~~~~~~~~~lP~yl~~~~g~s~~~------ag~l~~~~~i~~~~vG~~l~G~l~~r~~~~~~~~~~~~  405 (633)
T TIGR00805       332 YMLVILAQVIDSLAFNGYITFLPKYLENQYGISSAE------ANFLIGVVNLPAAGLGYLIGGFIMKKFKLNVKKAAYFA  405 (633)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHH------HHHHhhhhhhhHHHHHHhhhhheeeeecccHHHHHHHH
Confidence            3344455555566666677788855 4579999998      9998887776 568899999999999984  5666666


Q ss_pred             HHHHHHHHH
Q 015847          119 TASVVIFNT  127 (399)
Q Consensus       119 ~~~~~~~~~  127 (399)
                      .++..++.+
T Consensus       406 ~~~~~~~~~  414 (633)
T TIGR00805       406 ICLSTLSYL  414 (633)
T ss_pred             HHHHHHHHH
Confidence            655555543

Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.

>KOG4830 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=94.26  E-value=0.025  Score=48.01  Aligned_cols=63  Identities=8%  Similarity=0.034  Sum_probs=43.1

Q ss_pred             cccccccccchhHHHHHHHHHHHhhhhhHHHHHHHhhcCCcccCccccchhhHHHHHHHHHHHHHHHH
Q 015847          273 TPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQ  340 (399)
Q Consensus       273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~  340 (399)
                      ..+...+++-.+....+.+.+.-........+++.|..++     ++++.+...++-.+..+.....+
T Consensus       192 m~W~~WF~~v~~YQiAllYmLsRL~iNiSQaYlaFfvidd-----lqm~qsakAllP~v~Yl~SF~VS  254 (412)
T KOG4830|consen  192 MHWTSWFGHVQFYQIALLYMLSRLYINISQAYLAFFVIDD-----LQMEQSAKALLPMVAYLSSFSVS  254 (412)
T ss_pred             ccchhhhhhhHHHHHHHHHHHHHHHhhhhhhheeeEEeeh-----hhHHHHHhhhhHHHHHHhhhhHH
Confidence            4566777887888888888777766666677777776665     66666666666666555555544

>KOG3880 consensus Predicted small molecule transporter involved in cellular pH homeostasis (Batten disease protein in human) [General function prediction only]

Probab=94.22  E-value=0.64  Score=40.90  Aligned_cols=173  Identities=13%  Similarity=0.051  Sum_probs=96.4

Q ss_pred             HHHHHHHHhhccccchhhhHHHHHHHhccCccc---------cchhhhhhHHHHHHHHHHHhhhhcccccccccCCchhh
Q 015847           45 SIWIIVLCTALPISSLFPFLYFMIKDFQIAKRE---------EDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVI  115 (399)
Q Consensus        45 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~G~l~dr~Grr~~l  115 (399)
                      ..++..+++++++........++..+-.-++..         +-.+...|.+.-+-.+-..+..+.+..+.||+.--.=.
T Consensus        16 ~FwllGLcNN~~YVvmLSAA~DIl~~~~~~~~~~c~~h~~~r~c~~~stg~VLLaDilPsL~iKl~~Pff~~rfpf~~Ri   95 (409)
T KOG3880|consen   16 AFWLLGLCNNYGYVVMLSAAEDILSEQVSDPGPTCIPHNSGRECQSVSTGAVLLADILPSLAIKLTAPFFIHRFPFGFRI   95 (409)
T ss_pred             HHHHHHHhcccceEeehhhhhhhhccccCCCCCCcccccccccccccccchhhhhhhhHHHHHHHhchhhhhhcccchHH
Confidence            344555666666555544445554332211100         00111145555556666667777777888887643334


Q ss_pred             HHHHHHHHHHHHHHhccchHHHHHHHHHHHhhhccchhhHHHHHhhhccchhhhHHHHHHHHHHHHHHhHHHHhhhhhcC
Q 015847          116 IMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPIKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQ  195 (399)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~i~~~l~~  195 (399)
                      .+..++.+.+.++.+++++.++-+.+-.+..++.|..-...--++..+++.    ..+-+..+.+.++.+|..--.++.+
T Consensus        96 ~~~v~~sa~s~~lVafs~s~~~sL~GV~~aSissGlGEiTFL~lss~Y~~~----~i~~WSSGTGgAGliGa~SYa~lT~  171 (409)
T KOG3880|consen   96 ALVVLLSALSFFLVAFSNSVPMSLLGVVFASISSGLGEITFLALSSRYPSI----VIAGWSSGTGGAGLIGASSYAFLTS  171 (409)
T ss_pred             HHHHHHHhcceEEEEeccchhHHHhhhhhhhhcCCcceeehhhhhccCCCc----eeccccCCCCcchhhhhhHHHHHhh
Confidence            556677788888999999999888888888888777555433333344432    2333444445555555554444443


Q ss_pred             CCCCCCCcccccccccCCcchhhHHHHHHHHHHHHHHHHh
Q 015847          196 PAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFW  235 (399)
Q Consensus       196 ~~~~~~~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~  235 (399)
                      .             + +...+...++...+.++....+++
T Consensus       172 ~-------------~-~~spk~Tlli~l~lP~lfa~~yf~  197 (409)
T KOG3880|consen  172 W-------------A-NLSPKSTLLIMLFLPALFAFAYFF  197 (409)
T ss_pred             h-------------c-CCChhhHHHHHHHHHHHHHHHHHh
Confidence            1             1 344555556665555554444444

>PF01733 Nucleoside_tran: Nucleoside transporter; InterPro: IPR002259 Delayed-early response (DER) gene products include growth progression factors and several unknown products of novel cDNAs

Probab=93.89  E-value=0.019  Score=51.54  Aligned_cols=106  Identities=19%  Similarity=0.128  Sum_probs=2.1

Q ss_pred             HHHHHHHHHHHhhhhccccccccc-CCchhhHHHHHHHHH---HHHHHh----------ccchHHHHHHHHHHHhhhccc
Q 015847           86 YVGSSFMFGRALTSVFWGLVADRY-GRKPVIIMGTASVVI---FNTLFG----------LSVNFWMAVLTRFLLGSLNGL  151 (399)
Q Consensus        86 ~~~~~~~~~~~~~~~~~G~l~dr~-Grr~~l~~~~~~~~~---~~~~~~----------~~~~~~~l~~~r~l~G~~~~~  151 (399)
                      .....+.++-.+|..+.++.--+. .+|++. +..++-.+   ..+++.          +.+|-+..++..++.|+.+|-
T Consensus       186 ~~fl~Fn~gD~iGR~l~~~~~~~~~~~~~l~-~~s~~R~~fiPlf~~cn~~p~~~~~~~~~~~d~~~~i~~~l~g~TNGy  264 (309)
T PF01733_consen  186 VLFLLFNLGDFIGRFLASWPRWPGPSPRWLW-ILSLLRFLFIPLFLLCNVQPRPRYLPVLFNSDAWFIILMLLFGFTNGY  264 (309)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHhcchhcceeEecccccccHH-HHHHHHHHHHHHHHHHHhhcccccCCCcccchHHHHHHHHHHHHccch
Confidence            356678888888888776532111 244443 33322222   222221          123456677778899999999


Q ss_pred             hhhH-HHHHhhhccchhhhHHHHHHHHHHHHHHhHHHHhhhh
Q 015847          152 LGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGF  192 (399)
Q Consensus       152 ~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~i~~~  192 (399)
                      .... ..+..+..++++|..+-.+...+..+|..+|..++-.
T Consensus       265 l~tl~m~~~p~~v~~~e~e~aG~~~~~~L~~Gl~~Gs~ls~~  306 (309)
T PF01733_consen  265 LSTLAMMYAPKSVSPEERELAGSVMSFFLSFGLFIGSVLSFL  306 (309)
T ss_dssp             --HHHH------------------------------------
T ss_pred             hhhceeeeCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8774 8888999999999888888888888888888776543

Murine and human cDNAs from one novel DER gene (DER12) have been characterised to identify its product and to examine its role in the growth response []. Both sequences encode a hydrophobic 36kDa protein that is predicted to contain 8 transmembrane (TM) domains. The protein has been localised to the nucleolus, where its concentration increases following mitogen stimulation []. Although the function of the protein is unknown, its identification as a nucleolar gene transcriptionally activated by growth factors implicates it as participating in the proliferative response []. Sequence analysis reveals the protein to share a high degree of similarity with the C-terminal portion of equilibrative nucleoside transporters. These proteins are integral membrane proteins which enable the movement of hydrophilic nucleosides and nucleoside analogs down their concentration gradients across cell membranes. ENT family members have been identified in humans, mice, fish, tunicates, slime molds, and bacteria []. ; GO: 0005337 nucleoside transmembrane transporter activity, 0006810 transport, 0016020 membrane; PDB: 1HXI_A.

>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX)

Probab=93.22  E-value=1.4  Score=40.84  Aligned_cols=98  Identities=18%  Similarity=0.193  Sum_probs=72.3

Q ss_pred             hhhhhhHHHHHHHHHHHhhhhcccccccccCCchhhHHH--HHHHHHHHHHHhccchHHHHHHHHHHHhhhccchhh-HH
Q 015847           80 IGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMG--TASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGP-IK  156 (399)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~G~l~dr~Grr~~l~~~--~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~-~~  156 (399)
                      ...+-|.+-++..+...++.+..|++..++.+..-+.++  .++.+...++++..+|.|..+++.++.+.......+ +.
T Consensus       283 ~~vYNG~VeA~~tllgA~~al~~g~v~~~w~~~~~l~l~~~S~l~a~~L~lm~~t~~Iwv~Y~~yIif~~~y~fliTiA~  362 (412)
T PF01770_consen  283 ESVYNGAVEAASTLLGAIAALLAGYVKVNWDRWGELALGVFSLLQAGLLFLMSFTGNIWVCYAGYIIFRSLYMFLITIAS  362 (412)
T ss_pred             CcccchHHHHHHHHHHHHHHHHHhHhhcchHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345589999999999999999999998787775544444  344455566777889999999999888877555555 46


Q ss_pred             HHHhhhccchhhhHHHHHHHH
Q 015847          157 AYACEIFREEHQALGLSTVST  177 (399)
Q Consensus       157 ~~~~~~~~~~~r~~~~~~~~~  177 (399)
                      .-++....++.-+..+|+...
T Consensus       363 ~qIA~~l~~e~yaLVFGiNtf  383 (412)
T PF01770_consen  363 FQIAKNLSEERYALVFGINTF  383 (412)
T ss_pred             HHHHHhccccceeeeeeeHHH
Confidence            667777777777777776544

Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane

>TIGR00880 2_A_01_02 Multidrug resistance protein

Probab=92.61  E-value=0.17  Score=38.61  Aligned_cols=44  Identities=11%  Similarity=0.122  Sum_probs=32.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHhHHhHHH
Q 015847          331 ITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIA  375 (399)
Q Consensus       331 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  375 (399)
                      ...++..++. +..+++.||++||+.+..+.....++.......+
T Consensus         6 ~~~~~~~~~~-~~~g~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~   49 (141)
T TIGR00880         6 GYALGQLIYS-PLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSS   49 (141)
T ss_pred             eehhHHHHHH-hhHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhc
Confidence            3455666676 4788999999999999888877777766655443

>KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism]

Probab=91.29  E-value=4.8  Score=37.23  Aligned_cols=106  Identities=18%  Similarity=0.092  Sum_probs=72.6

Q ss_pred             hhHHHHH-HHHHHHhhhhcccccccccCCchhhHHHHHHHHHHHHHHh---------ccchHHHHHHHHHHHhhhccchh
Q 015847           84 AGYVGSS-FMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFG---------LSVNFWMAVLTRFLLGSLNGLLG  153 (399)
Q Consensus        84 ~~~~~~~-~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~---------~~~~~~~l~~~r~l~G~~~~~~~  153 (399)
                      .-....+ +.+...+|.+.+.++-++= ||+. .+..++-.+..-++.         .-++-+.+++...+.|+..|-..
T Consensus       284 ~~~~~~l~fN~~d~vG~~~a~~~~~~~-~r~l-~i~v~lR~lfiPlF~~cn~~~~~v~~~~~~~~~~l~~~lglsnGYlt  361 (406)
T KOG1479|consen  284 ALLLVFLSFNVFDLIGSILAALLTWPD-PRKL-TIPVLLRLLFIPLFLLCNYPPLPVVFESDGWFIFLMSLLGLSNGYLT  361 (406)
T ss_pred             HHHHHHHHhHHHHHhhhhhhhcccCCC-Ccee-hHHHHHHHHHHHHHHHhccCCCCceecCchHHHHHHHHHHhccchHh
Confidence            5555566 8888888877777665553 3433 333333333322222         23566778888899999999988


Q ss_pred             hH-HHHHhhhccchhhhHHHHHHHHHHHHHHhHHHHhhh
Q 015847          154 PI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGG  191 (399)
Q Consensus       154 ~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~i~~  191 (399)
                      .+ ..+..+..|++++-.+-.+.......|...|..++.
T Consensus       362 sl~m~~aPk~v~~~e~e~aG~~m~~fl~~Gl~~G~~~s~  400 (406)
T KOG1479|consen  362 SLIMMYAPKQVKPSEKEAAGNLMVFFLVGGLALGSLLSW  400 (406)
T ss_pred             hheehhcCCCCChHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence            86 889999999988877777777777777777776653

>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins

Probab=90.16  E-value=2.4  Score=36.58  Aligned_cols=56  Identities=20%  Similarity=0.118  Sum_probs=48.7

Q ss_pred             ccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHhHHhHH
Q 015847          317 GLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYI  374 (399)
Q Consensus       317 ~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  374 (399)
                      .+|+|.++...+.....++..++  +..|.+.|+.+++.++.+|.+...++...+...
T Consensus        31 ~l~~sq~~l~~l~~~~~~G~~~G--~~~G~l~d~~gp~~~l~iG~~~~~~GY~~~~l~   86 (250)
T PF06813_consen   31 RLGYSQSQLNTLSTAGDIGSYFG--ILAGLLYDRFGPWVVLLIGAVLGFVGYGLLWLA   86 (250)
T ss_pred             HhCCCHHHHHHHHHHHHHHhhcc--HHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHH
Confidence            38999999999998888888775  478999999999999999999999998877554

>PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ]

Probab=86.44  E-value=3.6  Score=39.07  Aligned_cols=55  Identities=13%  Similarity=0.075  Sum_probs=43.2

Q ss_pred             HHHHHhhhccchhh-HHHHHhhhccchhhhHHHHHHHHHHHHHHhHHHHhhhhhcC
Q 015847          141 TRFLLGSLNGLLGP-IKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQ  195 (399)
Q Consensus       141 ~r~l~G~~~~~~~~-~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~i~~~l~~  195 (399)
                      ..++.-+..-...+ ..++-+.+.+|..-|+.|.+.++..++|+.--..+.-+++|
T Consensus       411 ~~~l~sf~stvmFVai~AFharISDP~IGGTYMTLLNTvSNLGGtWP~~~vL~lVD  466 (544)
T PF13000_consen  411 QHVLSSFMSTVMFVAIMAFHARISDPAIGGTYMTLLNTVSNLGGTWPRTFVLWLVD  466 (544)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhccCcccchHHHHHHHHHHhcCCCchHHHHHHHhh
Confidence            33555555555555 48899999999999999999999999999877777666666

This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane

>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors)

Probab=86.01  E-value=3.9  Score=40.93  Aligned_cols=69  Identities=10%  Similarity=0.083  Sum_probs=50.0

Q ss_pred             hHHHHHHHhhcCCcccCccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHH-hcchhHHHHHHHHHHHHHhHHhHH
Q 015847          300 AYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERI-LGPIMVARIAGVLTIPLLTSYPYI  374 (399)
Q Consensus       300 ~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~  374 (399)
                      +....+..|+...     +|++...+..++..+....-+..+ +++++.|+ +|+++.+.++.++..++..++...
T Consensus         5 Gm~aiLvlYl~~~-----lg~~~~~A~~i~~~f~~l~yl~pi-lGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~   74 (654)
T TIGR00926         5 GMRTILVLYFLNF-----LGFSESTSTVLFHTFTYLCYLTPL-IGAIIADGWLGKFKTILYLSIVYVVGHALLSFG   74 (654)
T ss_pred             ecHHHHHHHHHHH-----cCCcHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhc
Confidence            3444555666554     788888877777766666666664 77777776 799999999999888888776543

>KOG2601 consensus Iron transporter [Inorganic ion transport and metabolism]

Probab=85.81  E-value=2.6  Score=38.30  Aligned_cols=150  Identities=9%  Similarity=-0.062  Sum_probs=82.9

Q ss_pred             hHHHHHHHHHHHhhccccchhhhHHHHHHHhccCccccchhhhhhHHHHHHHHHHHhhhhcccccccccCCchhhHHHHH
Q 015847           41 TELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTA  120 (399)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~  120 (399)
                      +..+.+..++++...+.-+.......++.+++-+.-.     +...-...-.....+..++.|...|+..|+|++.....
T Consensus        27 ~~~i~Ly~gy~lt~wgdR~W~F~VsL~M~~L~gnsl~-----lvAvyglvesgs~lvlg~ivGq~vDg~sr~Kvi~~~L~  101 (503)
T KOG2601|consen   27 STVIFLYLGYFLTTWGDRMWEFSVSLFMILLGGNSLL-----LVAVYGLVESGSQLVLGPIVGQWVDGMSRVKVIQTWLL  101 (503)
T ss_pred             ceeehhhHHHHHhHhhHhHHHHHHHHHHHHHcCceeh-----hHHHHHHHHHhHHHhhHHHHHHHhcchhHHHHHHHHHh
Confidence            4445677778888877777777777677666543322     13333334445556778889999999999998866554


Q ss_pred             HHHHHH------HHHhcc-c-----hHHHHHHHHHHHhhhc--cchhh-HHHHH--hhhc-------cchhhhHHHHHHH
Q 015847          121 SVVIFN------TLFGLS-V-----NFWMAVLTRFLLGSLN--GLLGP-IKAYA--CEIF-------REEHQALGLSTVS  176 (399)
Q Consensus       121 ~~~~~~------~~~~~~-~-----~~~~l~~~r~l~G~~~--~~~~~-~~~~~--~~~~-------~~~~r~~~~~~~~  176 (399)
                      +.-++.      +...+. +     +...+..+-++.-...  +-... +.+++  .||.       ++....+..+...
T Consensus       102 lqNlSv~vagglvi~~l~~~~~~~~t~pv~t~~lvLa~~i~aI~~Las~A~~i~i~RDWvvV~s~g~s~s~lt~mnatir  181 (503)
T KOG2601|consen  102 LQNLSVIVAGGLVITLLVHKDLKSATSPVFTVCLVLANLIAAIAVLASLAGTILIERDWVVVMSEGESPSVLTNMNATIR  181 (503)
T ss_pred             hccHHHHHHHHHHhhheeecchhcccccHHHHHHHHHHHHHHHHHHHHhhheEEecccEEEEecCCCCHHHHhhcchhhh
Confidence            332222      222222 2     3444444433333221  11222 22222  2333       2223333335555


Q ss_pred             HHHHHHHhHHHHhhhhhcC
Q 015847          177 TAWGIGLIIGPALGGFLAQ  195 (399)
Q Consensus       177 ~~~~~g~~~~p~i~~~l~~  195 (399)
                      ..-..-..++|.+.|.+.+
T Consensus       182 ~iDq~tn~Lapv~tg~Iit  200 (503)
T KOG2601|consen  182 GIDQSTNLLAPVITGLIIT  200 (503)
T ss_pred             hhhhhhhchhhhhhcccce
Confidence            5556677899999999887

>PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS)

Probab=84.82  E-value=11  Score=32.55  Aligned_cols=101  Identities=23%  Similarity=0.277  Sum_probs=52.3

Q ss_pred             hhHHHHHHHHHHHhhhhcccccccc-cCCchhhH----HHHHHHHHHHHHHhc-c----chHHHHHHHHHHHhhh-ccch
Q 015847           84 AGYVGSSFMFGRALTSVFWGLVADR-YGRKPVII----MGTASVVIFNTLFGL-S----VNFWMAVLTRFLLGSL-NGLL  152 (399)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~G~l~dr-~Grr~~l~----~~~~~~~~~~~~~~~-~----~~~~~l~~~r~l~G~~-~~~~  152 (399)
                      ......++..+..+|....|.+... +.||+.+.    .+.+..++..++.+. .    .+...+++.-++.|.+ .|..
T Consensus       143 ~~~~~I~fv~g~~~G~~~ig~~nkt~~kRk~fi~~~~~~gi~~~~l~~~~~~~~g~~~~~~~~~f~I~~Fl~G~f~WgiQ  222 (267)
T PF07672_consen  143 IPIFQILFVAGYFLGPFTIGLWNKTNYKRKPFIHFIISLGIVFFVLSIVVVYFVGPGNAAGFAFFYIFGFLAGFFLWGIQ  222 (267)
T ss_pred             hHHHHHHHHHHHhhhceeeccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhhh
Confidence            4566667777788888888988764 34555433    233444444443211 1    1355677777788875 4444


Q ss_pred             hhHHHHHhhhccchhhhHHHHHHHHHHHHHHhH
Q 015847          153 GPIKAYACEIFREEHQALGLSTVSTAWGIGLII  185 (399)
Q Consensus       153 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~  185 (399)
                      .+.. .+..-++..++-+.--.++..+++|.++
T Consensus       223 ~ViL-~lPhEyK~~~pk~ig~~Fg~iWGfGY~~  254 (267)
T PF07672_consen  223 GVIL-NLPHEYKGYNPKKIGIQFGLIWGFGYIF  254 (267)
T ss_pred             HHHh-cChhhhcCCCcceehhHHHHHHHHHHHH
Confidence            3322 2332233222222222334555555543

>TIGR00769 AAA ADP/ATP carrier protein family

Probab=83.30  E-value=21  Score=34.24  Aligned_cols=147  Identities=14%  Similarity=0.088  Sum_probs=77.2

Q ss_pred             HHHHHHHHhhccccchhhhHHHHHHHhccCccccchhhhhhHHHHHHHHHHHhhhhcccccccccCCchhhHHHHHHHHH
Q 015847           45 SIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVI  124 (399)
Q Consensus        45 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~  124 (399)
                      .++...++.+...+.+........++...++.+  ...+.|.......+...+.+++.+++.+|+|-+....+.-+...+
T Consensus       268 ~ia~~vi~y~~~~nlve~~~k~~v~~~~p~~~~--~~~f~g~~~~~~gi~tl~~~l~~~~l~~~~Gw~~~a~i~Pii~li  345 (472)
T TIGR00769       268 DLALLVIAYGISINLVEVTWKSKLKAQYPSPNE--YSAFMGDFSTWTGVVSVTMMLLSGNVIRKYGWLTAALITPLVMLL  345 (472)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence            344444444444454444444444554444433  233456666666677777777779999999988777666554444


Q ss_pred             H---HHHHhccc------------hH-H-HHHHH---HHHHhhh-ccchhhHHHHHhhhccchhhhHHHHHH-HHHHHHH
Q 015847          125 F---NTLFGLSV------------NF-W-MAVLT---RFLLGSL-NGLLGPIKAYACEIFREEHQALGLSTV-STAWGIG  182 (399)
Q Consensus       125 ~---~~~~~~~~------------~~-~-~l~~~---r~l~G~~-~~~~~~~~~~~~~~~~~~~r~~~~~~~-~~~~~~g  182 (399)
                      .   .+.+.+.+            ++ . ..+++   .++.-.+ .+...|+--++.--.+++.|.++=+.. ..+..+|
T Consensus       346 t~~~Ff~~~~f~~~~~~~~~~l~~~pl~l~v~~g~~~~v~~k~~kYsl~dp~kEmly~pld~e~K~K~Ka~iD~v~~r~G  425 (472)
T TIGR00769       346 TGVAFFSLIFFGGPAAPLVAKLGMTPLLLAVYVGAIQNILSKSTKYSLFDATKEMAYIPLDEEQKVKGKAAIDVVAARLG  425 (472)
T ss_pred             HHHHHHHHHHhcccchhhhhhhccChHHHHHHHHHHHHHHHHHhhhccccHHHHHhcccCCHHHHHHhHhhhhhhhhhhh
Confidence            2   22111111            11 0 01111   1122222 233444433333345678888888877 5566677


Q ss_pred             HhHHHHhhhhh
Q 015847          183 LIIGPALGGFL  193 (399)
Q Consensus       183 ~~~~p~i~~~l  193 (399)
                      -..|..+...+
T Consensus       426 ks~gs~i~~~l  436 (472)
T TIGR00769       426 KSGGALIQQGL  436 (472)
T ss_pred             hHHHHHHHHHH
Confidence            77776655543

These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.

>KOG3880 consensus Predicted small molecule transporter involved in cellular pH homeostasis (Batten disease protein in human) [General function prediction only]

Probab=80.57  E-value=8.6  Score=34.20  Aligned_cols=105  Identities=11%  Similarity=0.125  Sum_probs=69.0

Q ss_pred             hhHHHHHHHHHHHhhhhcccccccccCC-chh--h---HHHHHHHHHHHHHHhccchHHHHHHHHHHHhhhccchhh-HH
Q 015847           84 AGYVGSSFMFGRALTSVFWGLVADRYGR-KPV--I---IMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGP-IK  156 (399)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~G~l~dr~Gr-r~~--l---~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~-~~  156 (399)
                      .-|....|.+|..+..-     +-|+=+ +..  +   ..-..++.+.-....+.++++..++.-+..|+-+|...+ ..
T Consensus       290 YRwyqvlYQlGVFiSRS-----S~~~~~~p~l~~LailQ~vNl~ff~~~a~~~ftpsi~ivf~lI~~EGLlGGasYVNTf  364 (409)
T KOG3880|consen  290 YRWYQVLYQLGVFISRS-----SINLFTMPYLWLLAILQFVNLLFFLLQAWYWFTPSIWIVFALILFEGLLGGASYVNTF  364 (409)
T ss_pred             chhhheeeeeeEEEEec-----cceEEechHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcCchHHHHHH
Confidence            56777777766443332     222211 111  1   122233344445566788999988888999997666665 46


Q ss_pred             HHHhhhccchhhhHHHHHHHHHHHHHHhHHHHhhhhh
Q 015847          157 AYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFL  193 (399)
Q Consensus       157 ~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~i~~~l  193 (399)
                      --+.+-.++++|-.+++....+-++|..++.+++-.+
T Consensus       365 ~~i~~e~~pd~rEfamsavs~sDS~Gi~lA~~lalpl  401 (409)
T KOG3880|consen  365 HNIHKETEPDVREFAMSAVSISDSIGIFLAGLLALPL  401 (409)
T ss_pred             HHHhhcCCchHHHHhHhhheecchhhHHHHHHHhccc
Confidence            6677777889999999999888888888877776544

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	399
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	7e-10
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-07
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	3e-06
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	9e-06
2cfq_A	417	Lactose permease; transport, transport mechanism,	2e-05

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} Length = 375

 Score = 59.2 bits (144), Expect = 7e-10
 Identities = 27/158 (17%), Positives = 67/158 (42%), Gaps = 18/158 (11%)

Query: 89  SSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSL 148
            +++    ++ +F+G ++DR GR+PVI++G +  ++   +   + +  + +    + G +
Sbjct: 42  GAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVTTSSLTVLIAASAMQG-M 100

Query: 149 NGLLGPIKAYAC--EIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSS 206
              +G + A     +++         S ++    +  ++ P +GG L         +++ 
Sbjct: 101 GTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDT-------MWNW 153

Query: 207 ESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHN 244
            + +     FL  LC  +        A W+PET     
Sbjct: 154 RACY----LFLLVLCAGVTF----SMARWMPETRPVDA 183

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 51.0 bits (121), Expect = 5e-07
 Identities = 69/414 (16%), Positives = 112/414 (27%), Gaps = 138/414 (33%)

Query: 87  VGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFG---------------- 130
           V     F      +FW  +  +    P  ++      +   L                  
Sbjct: 176 VQCKMDFK-----IFW--LNLKNCNSPETVL-----EMLQKLLYQIDPNWTSRSDHSSNI 223

Query: 131 -LSVNFWMAVLTRFLLGSL--NGLL--------GPIKAYA--CEIF---REEHQALGLST 174
            L ++   A L R L      N LL            A+   C+I    R +     LS 
Sbjct: 224 KLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSA 283

Query: 175 VSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKF----PYFLP---C----LCIS 223
            +T     + +          P E        +SL  K+    P  LP          +S
Sbjct: 284 ATT---THISLDHHSMTL--TPDE-------VKSLLLKYLDCRPQDLPREVLTTNPRRLS 331

Query: 224 LFA--------------------FGVTIAAFW--LPETLHRHNDDD-----DSCDVSYDA 256
           + A                        I +    L    +R   D       S  +    
Sbjct: 332 IIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTIL 391

Query: 257 LESASAEVKEEEGREATP---KKSLLKNWPLMSSIIVYCVF-----------SLHDM--- 299
           L     +V + +         K SL++  P  S+I +  ++           +LH     
Sbjct: 392 LSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVD 451

Query: 300 AYSEI--FSLWANSPKKLGGLNYSTQMVGEVLA-------ITGFSLLVFQLSLYPFLE-- 348
            Y+    F      P  L    Y    +G  L        +T F ++        FLE  
Sbjct: 452 HYNIPKTFDSDDLIPPYLD--QYFYSHIGHHLKNIEHPERMTLFRMVFLDFR---FLEQK 506

Query: 349 -RILGPIMVARIAGVLTIPLLTSY-PYI--------AMLSGFGLAFLLNCASVV 392
            R       A  + + T+  L  Y PYI         +++   L FL      +
Sbjct: 507 IRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAI-LDFLPKIEENL 559

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 Length = 451

 Score = 48.1 bits (115), Expect = 3e-06
 Identities = 27/219 (12%), Positives = 56/219 (25%), Gaps = 34/219 (15%)

Query: 85  GYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFL 144
           G+  S        +    G V+DR   +  +  G           G       ++   F+
Sbjct: 65  GFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFV 124

Query: 145 LGSLNGLL-GPIKAYACEI------FREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPA 197
           L  L G   G    +          + ++ +   +S  + A  +G  I P L        
Sbjct: 125 LLFLCGWFQGM--GWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMA-- 180

Query: 198 EKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWL-----PETLHRHNDDDDSCDV 252
                     +                    + +A F                 +   + 
Sbjct: 181 ----WFNDWHAAL-----------YMPAFCAILVALFAFAMMRDTPQSCGLPPIE---EY 222

Query: 253 SYDALESASAEVKEEEGREATPKKSLLKNWPLMSSIIVY 291
             D  +  + + ++E   +    + +L N  L    I  
Sbjct: 223 KNDYPDDYNEKAEQELTAKQIFMQYVLPNKLLWYIAIAN 261

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* Length = 438

 Score = 46.5 bits (110), Expect = 9e-06
 Identities = 45/324 (13%), Positives = 91/324 (28%), Gaps = 48/324 (14%)

Query: 84  AGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSV---NFWMAVL 140
           AG + S+F FG  +  +  G++  +   K  II G     +   LF  +    N+ + ++
Sbjct: 63  AGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAEIMNYTLFLV 122

Query: 141 TRFLLGSLNGLLG-PIKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFL------ 193
             F++ +  G L      +   +  E      L+   T    G II    G  L      
Sbjct: 123 GLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVP 182

Query: 194 --------AQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHND 245
                       E+      S  L  + PY +    + L A  + +     P     ++ 
Sbjct: 183 HQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTK--FPALQSDNHS 240

Query: 246 DDDSCDVSYDALESASAEVKEEEGREATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIF 305
           D                    ++G  +     L +      +++    +     A     
Sbjct: 241 D-------------------AKQGSFSASLSRLARIRHWRWAVLAQFCYVGAQTACWSYL 281

Query: 306 SLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERI-----LGPIMVARIA 360
             +A           +       L  T     + + +    + R      L    +  +A
Sbjct: 282 IRYAVEE----IPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMA 337

Query: 361 GVLTIPLLTSYPYIAMLSGFGLAF 384
             L       +  +  L+      
Sbjct: 338 LCLISAFAGGHVGLIALTLCSAFM 361

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* Length = 417

 Score = 45.3 bits (107), Expect = 2e-05
 Identities = 41/322 (12%), Positives = 94/322 (29%), Gaps = 48/322 (14%)

Query: 81  GSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVI---------FNTLFGL 131
            S  G + ++      L    +GL++D+ G +  ++     +++         F  L   
Sbjct: 42  KSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQY 101

Query: 132 SVNFWMAVLTRFLLGSLNGLLGPIKAYACEIFREEHQALGLSTVSTAWG-IGLIIGPALG 190
           ++     V   +L    N     ++A+  ++ R  +   G + +   +G +G  +G ++ 
Sbjct: 102 NILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARM---FGCVGWALGASIV 158

Query: 191 GFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSC 250
           G                 +F     F+  L          +  F   +            
Sbjct: 159 GI----------------MFTINNQFVFWLGSGCALILAVLLFFAKTDAPS--------- 193

Query: 251 DVSYDALESASAEVKEEEGREATPKKSLLKNWPLMS-SIIVYCVFSLHDMAYSEIFSLWA 309
                +   A+A               L +   L   S+ V  V   +D+   +  + + 
Sbjct: 194 -----SATVANAVGANHSAFSLKLALELFRQPKLWFLSLYVIGVSCTYDVFDQQFANFFT 248

Query: 310 NSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLT 369
           +           T++ G V  +               + RI G      +AG +    + 
Sbjct: 249 SFFATGE---QGTRVFGYVTTMGELLNASIMFFAPLIINRI-GGKNALLLAGTIMSVRII 304

Query: 370 SYPYIAMLSGFGLAFLLNCASV 391
              +        +   L+   V
Sbjct: 305 GSSFATSALEVVILKTLHMFEV 326

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	399
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	100.0
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	100.0
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	99.96
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	99.96
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	99.94
2cfq_A	417	Lactose permease; transport, transport mechanism,	99.89
2xut_A	524	Proton/peptide symporter family protein; transport	99.85
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	99.58
2cfq_A	417	Lactose permease; transport, transport mechanism,	99.49
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	99.47
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	99.37
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	99.33
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	98.99
2xut_A	524	Proton/peptide symporter family protein; transport	98.84

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=100.00  E-value=5.5e-32  Score=254.43  Aligned_cols=307  Identities=14%  Similarity=0.143  Sum_probs=240.5

Q ss_pred             CChhHHHHHHHHHHHhhccccchhhhHHHHHHHhccCccccchhhhhhHHHHHHHHHHHhhhhcccccccccCCchhhHH
Q 015847           38 LPITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIM  117 (399)
Q Consensus        38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~dr~Grr~~l~~  117 (399)
                      .+++.+..++...+..++......+.+|.+.+++|.+..+      .+++.+++.++..+++++.|+++||+|||+++++
T Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~------~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~   96 (438)
T 3o7q_A           23 SYIIPFALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQ------AGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIIT   96 (438)
T ss_dssp             TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCSHH------HHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHH
T ss_pred             HhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHH------HHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHH
Confidence            3445566677778888888889999999999999999999      9999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHH---hccchHHHHHHHHHHHhhhccchhhH-HHHHhhhccchhhhHHHHHHHHHHHHHHhHHHHhhhhh
Q 015847          118 GTASVVIFNTLF---GLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFL  193 (399)
Q Consensus       118 ~~~~~~~~~~~~---~~~~~~~~l~~~r~l~G~~~~~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~i~~~l  193 (399)
                      +.++.+++.+++   +++++++.+++.|++.|++.+...+. .++++|++|+++|++++++.+.+.++|..++|.+++.+
T Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l  176 (438)
T 3o7q_A           97 GLFLYALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSL  176 (438)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHH
T ss_pred             HHHHHHHHHHHHHhccccccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999   88899999999999999998888775 99999999999999999999999999999999999999


Q ss_pred             c-CCCCCCC----------CcccccccccCCcchhhHHHHHHHHHHHHHHHHhc--ccCCCCCCCCCCccchhhhhhhhh
Q 015847          194 A-QPAEKYP----------NLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWL--PETLHRHNDDDDSCDVSYDALESA  260 (399)
Q Consensus       194 ~-~~~~~~~----------~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~--~e~~~~~~~~~~~~~~~~~~~~~~  260 (399)
                      . +..+...          ...+|+... ..+|+.++.+.++..++..+..++.  ||++++.++++++           
T Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~w~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~-----------  244 (438)
T 3o7q_A          177 ILSNVPHQSQDVLDKMSPEQLSAYKHSL-VLSVQTPYMIIVAIVLLVALLIMLTKFPALQSDNHSDAKQ-----------  244 (438)
T ss_dssp             HHTSSCCCCHHHHHHSCHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCTTTCCCCSST-----------
T ss_pred             HhcccccccccccccCCcchhhhhhhhh-hhhHHHHHHHHHHHHHHHHHHHHHHcCCcccccccccccc-----------
Confidence            8 4110000          000011000 1115555566665555544444433  3333221111100           


Q ss_pred             hhhhhhccccCCcccccccccchhHHHHHHHHHHHhhhhhHHHHHHHh-hcCCcccCccccchhhHHHHHHHHHHHHHHH
Q 015847          261 SAEVKEEEGREATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLW-ANSPKKLGGLNYSTQMVGEVLAITGFSLLVF  339 (399)
Q Consensus       261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~  339 (399)
                              ++.....++++++|.++...+..++..........++|.| +++.     +|+++.+++...+...++.+++
T Consensus       245 --------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~g~~~~~~~~~~~~~~~~~~~~  311 (438)
T 3o7q_A          245 --------GSFSASLSRLARIRHWRWAVLAQFCYVGAQTACWSYLIRYAVEEI-----PGMTAGFAANYLTGTMVCFFIG  311 (438)
T ss_dssp             --------TSHHHHHHHHTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-----TTCCHHHHHHHHHHHHHHHHHH
T ss_pred             --------cchhhhHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc-----CCcchhHHHHHHHHHHHHHHHH
Confidence                    0111245678889999999988888888888888999999 7765     6999999999999999999999


Q ss_pred             HHHHHHHHHHHhcchhHHHHHHHHHHHHHhHHhHHHH
Q 015847          340 QLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIAM  376 (399)
Q Consensus       340 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  376 (399)
                      + ++.+++.||+++|+.+..+.++..++++.+.+.+.
T Consensus       312 ~-~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~  347 (438)
T 3o7q_A          312 R-FTGTWLISRFAPHKVLAAYALIAMALCLISAFAGG  347 (438)
T ss_dssp             H-HHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCCH
T ss_pred             H-HHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHcCC
Confidence            8 48999999999999999888888887776665543

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=100.00  E-value=3.3e-32  Score=256.88  Aligned_cols=303  Identities=13%  Similarity=0.057  Sum_probs=239.5

Q ss_pred             hhHHHHHHHHHHHhhccccchhhhHHHHHHHhccCccccchhhhhhHHHHHHHHHHHhhhhcccccccccCCchhhHHHH
Q 015847           40 ITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGT  119 (399)
Q Consensus        40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~  119 (399)
                      ++.+...++..+..........+.+|.+.+++ .+..+      .+++.+++.++..++++++|+++||+|||++++++.
T Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~s~~~------~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~   99 (451)
T 1pw4_A           27 WQIFLGIFFGYAAYYLVRKNFALAMPYLVEQG-FSRGD------LGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGL   99 (451)
T ss_dssp             HHHHHHHHHHHHHHHHHHTSHHHHHHHTTSST-TCSSC------HHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHhH------HHHHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHH
Confidence            34455677778888888889999999999999 99999      999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhc----cchHHHHHHHHHHHhhhccchhhH-HHHHhhhccchhhhHHHHHHHHHHHHHHhHHHHhhhhhc
Q 015847          120 ASVVIFNTLFGL----SVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLA  194 (399)
Q Consensus       120 ~~~~~~~~~~~~----~~~~~~l~~~r~l~G~~~~~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~i~~~l~  194 (399)
                      ++.+++.+++++    +++++.++++|++.|++.+...+. .+++.|++|+++|++++++.+.+..+|..++|.+++++.
T Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~  179 (451)
T 1pw4_A          100 ILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGM  179 (451)
T ss_dssp             HHHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999    999999999999999998887775 999999999999999999999999999999999999988


Q ss_pred             CCCCCCCCccc-ccccccCCcchhhHHHHHHHHHHH-HHHHHhcccCCCCCCCCCCccchhhhhhhhhhhhhhhccccCC
Q 015847          195 QPAEKYPNLFS-SESLFGKFPYFLPCLCISLFAFGV-TIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREA  272 (399)
Q Consensus       195 ~~~~~~~~~~g-w~~~f~~~~~~~~~~~~~~~~~~~-~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  272 (399)
                      +       ..| ||+.|         ++.+++.++. ++..+.+||++++...+++++.....+  ...+ .+++++...
T Consensus       180 ~-------~~g~w~~~f---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-~~~~~~~~~  240 (451)
T 1pw4_A          180 A-------WFNDWHAAL---------YMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKNDYP--DDYN-EKAEQELTA  240 (451)
T ss_dssp             H-------HTCCSTTCT---------HHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTTTCCC----------------CC
T ss_pred             H-------HhccHHHHH---------HHHHHHHHHHHHHHHhhccCCHhhcCCCChhhhccccc--ccch-hhhhccccc
Confidence            7       555 66665         6666665554 444567788765543222111100000  0000 000011111


Q ss_pred             c--ccccccccchhHHHHHHHHHHHhhhhhHHHHHHHhhcCCcccCccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015847          273 T--PKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERI  350 (399)
Q Consensus       273 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~  350 (399)
                      .  ..++.+++|.++...+..++..........++|.|+.+.     +|+++.+.+.+.+..+++.+++.. +.+++.||
T Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~g~~~~~~~~~~~~~~~~~~~~~~-~~g~l~~~  314 (451)
T 1pw4_A          241 KQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEV-----KHFALDKSSWAYFLYEYAGIPGTL-LCGWMSDK  314 (451)
T ss_dssp             THHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHBTTB-----SCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
T ss_pred             ccchHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----cCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence            1  146678899999999988888888888999999998876     789999999999999999999985 88999999


Q ss_pred             h--cchhHHHHHHHHHH-HHHhHHhHH
Q 015847          351 L--GPIMVARIAGVLTI-PLLTSYPYI  374 (399)
Q Consensus       351 ~--~~~~~~~~~~~~~~-~~~~~~~~~  374 (399)
                      +  ++|+.+..+..+.. ++++.+.+.
T Consensus       315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~  341 (451)
T 1pw4_A          315 VFRGNRGATGVFFMTLVTIATIVYWMN  341 (451)
T ss_dssp             TSTTCHHHHHHHHHHHHHHHHHHTTSC
T ss_pred             HhcCCchhHHHHHHHHHHHHHHHHHHh
Confidence            9  99888877766655 555555443

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=99.96  E-value=1.6e-29  Score=232.79  Aligned_cols=260  Identities=16%  Similarity=0.252  Sum_probs=215.9

Q ss_pred             HHHHHHHHHhhccccchhhhHHHHHHHhccCccccchhhhhhHHHHHHHHHHHhhhhcccccccccCCchhhHHHHHHHH
Q 015847           44 FSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVV  123 (399)
Q Consensus        44 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~  123 (399)
                      +.++...++.........+.+|.+.+++|.++.+      .+++.+++.++..+++++.|+++||+|||+++..+.++.+
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~------~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~   76 (375)
T 2gfp_A            3 LMLVLLVAVGQMAQTIYIPAIADMARDLNVREGA------VQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFM   76 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHTTSSSTTHH------HHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhhhhHHHHHHcCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHH
Confidence            3456677778888888999999999999999999      9999999999999999999999999999999999999999


Q ss_pred             HHHHHHhccchHHHHHHHHHHHhhhccchhhH-HHHHhhhccchhhhHHHHHHHHHHHHHHhHHHHhhhhhcCCCCCCCC
Q 015847          124 IFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPN  202 (399)
Q Consensus       124 ~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~i~~~l~~~~~~~~~  202 (399)
                      ++.++.+++++++.+++.|++.|++.+...+. .+++.|++|+++|+++++..+....+|..++|.+++++.+       
T Consensus        77 ~~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~-------  149 (375)
T 2gfp_A           77 LATLVAVTTSSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDT-------  149 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSC-------
T ss_pred             HHHHHHHHhccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH-------
Confidence            99999999999999999999999999888775 9999999999999999999999999999999999999987       


Q ss_pred             cccccccccCCcchhhHHHHHHHHHHHHH-HHHhcccCCCCCCCCCCccchhhhhhhhhhhhhhhccccCCccccccccc
Q 015847          203 LFSSESLFGKFPYFLPCLCISLFAFGVTI-AAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKN  281 (399)
Q Consensus       203 ~~gw~~~f~~~~~~~~~~~~~~~~~~~~~-~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  281 (399)
                      ..|||         ..+.+.++..++..+ ..+.+||+++++++++                      +...+.++.+++
T Consensus       150 ~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------~~~~~~~~~~~~  198 (375)
T 2gfp_A          150 MWNWR---------ACYLFLLVLCAGVTFSMARWMPETRPVDAPRT----------------------RLLTSYKTLFGN  198 (375)
T ss_dssp             HHHHH---------HHHHHHHHHHHHHHCCCCCSSCCCSTTTCCCC----------------------CTTTCSTHHHHH
T ss_pred             hccHH---------HHHHHHHHHHHHHHHHHHHHCcccCCCCcccc----------------------cHHHHHHHHhcC
Confidence            44454         444666666555444 4455677654322111                      112245677889


Q ss_pred             chhHHHHHHHHHHHhhhhhHHHHHHHhhcCCcccCccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 015847          282 WPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGP  353 (399)
Q Consensus       282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~  353 (399)
                      |+++...+..++.......+..++|.|.++.     +|+++.+.+.+....+++.+++.. +.+++.||.++
T Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~g~~~~~~g~~~~~~~~~~~~~~~-~~~~l~~r~~~  264 (375)
T 2gfp_A          199 SGFNCYLLMLIGGLAGIAAFEACSGVLMGAV-----LGLSSMTVSILFILPIPAAFFGAW-FAGRPNKRFST  264 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHCSCSSHHH-----HHHHHHHHHHHHHTHHHHHHHHHH-HHHTTTTHHHH
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence            9998888888887777777777777666554     788999999999999999998884 78888888877

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=99.96  E-value=2.2e-28  Score=233.36  Aligned_cols=313  Identities=14%  Similarity=0.046  Sum_probs=219.3

Q ss_pred             HHHHHHhhccccchhhhHHHHHHHhccCccc--cchhhhhhHHHHHHHHHHHhhhhcccccccccCCchhhHHHHHHHHH
Q 015847           47 WIIVLCTALPISSLFPFLYFMIKDFQIAKRE--EDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVI  124 (399)
Q Consensus        47 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~  124 (399)
                      .++.++.+++...++..+|.+.++++.+...  .......|++.+++.+|..++++++|+++||+|||++++++.+++.+
T Consensus        18 ~lg~~~~Gyd~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~G~~iG~~~~G~laDr~GRk~~l~~~~~l~~i   97 (491)
T 4gc0_A           18 TLGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFI   97 (491)
T ss_dssp             HHHHHHHHHHHHGGGGTHHHHHHHHTGGGCCCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence            4456677778888888999998887654322  12234478999999999999999999999999999999999999999


Q ss_pred             HHHHHh------------------ccchHHHHHHHHHHHhhhccchhhH-HHHHhhhccchhhhHHHHHHHHHHHHHHhH
Q 015847          125 FNTLFG------------------LSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLII  185 (399)
Q Consensus       125 ~~~~~~------------------~~~~~~~l~~~r~l~G~~~~~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~  185 (399)
                      +.++++                  +++|++.++++|+++|++.|...+. .++++|+.|+++|++..+..+.+..+|..+
T Consensus        98 ~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~rg~~~~~~~~~~~~g~~~  177 (491)
T 4gc0_A           98 SGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRIIGGIGVGLASMLSPMYIAELAPAHIRGKLVSFNQFAIIFGQLL  177 (491)
T ss_dssp             HHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHhhhhhHHhhhhhhhhhhhh
Confidence            999988                  4789999999999999998887775 999999999999999999999999999999


Q ss_pred             HHHhhhhhcCCCCCCCCcccccccccCCcchhhHHHHHHHHHHHHHHHHhcccCCCCCCCCCCccchhh--hhhhhh---
Q 015847          186 GPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSY--DALESA---  260 (399)
Q Consensus       186 ~p~i~~~l~~~~~~~~~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~--~~~~~~---  260 (399)
                      ++.++..+..       ..++.... .+.|+.++....+..++.++..+++||+|++...+.+.++...  ++....   
T Consensus       178 ~~~~~~~~~~-------~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~peSp~~L~~~~~~~~a~~~l~~~~~~~~~  249 (491)
T 4gc0_A          178 VYCVNYFIAR-------SGDASWLN-TDGWRYMFASECIPALLFLMLLYTVPESPRWLMSRGKQEQAEGILRKIMGNTLA  249 (491)
T ss_dssp             HHHHHHHHHT-------TSCTTTTT-TTHHHHHHHTTHHHHHHHHHHGGGSCCCHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             hhhcchhhcc-------cccccccc-chhhHHHhhhhhhhhhhhhhhhhcCCCChHHHHHcCchhHHHHhHHHhcCCchh
Confidence            9999988876       33333333 4567777788888888888888899999976543333222111  110000   


Q ss_pred             ---hhhhh--hccccCCcccccccccchhHHHHHHHHHHHhh-hhhHHHHHHHhhcCCcccCccccchhhHHHHHHHHHH
Q 015847          261 ---SAEVK--EEEGREATPKKSLLKNWPLMSSIIVYCVFSLH-DMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGF  334 (399)
Q Consensus       261 ---~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~  334 (399)
                         ..+.+  .++.+........++.+..........+.... ......+.+.....      .+.+...........++
T Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~  323 (491)
T 4gc0_A          250 TQAVQEIKHSLDHGRKTGGRLLMFGVGVIVIGVMLSIFQQFVGINVVLYYAPEVFKT------LGASTDIALLQTIIVGV  323 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHTTHHHHSCCTHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH------SSCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhhhhhHHHHhcccHHHHHHHHHHHHHHhhhhHHHhcchHHHHh------cCCCccchhhHHHHHHH
Confidence               00000  00011111122233334443333333333322 22333333333322      45666666667777778


Q ss_pred             HHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHhHHhHH
Q 015847          335 SLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYI  374 (399)
Q Consensus       335 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  374 (399)
                      ...++. ++.+++.||+|||+.+..+.....++++.+...
T Consensus       324 ~~~~~~-~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~  362 (491)
T 4gc0_A          324 INLTFT-VLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTA  362 (491)
T ss_dssp             HHHHHH-HHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHH-HHHHHHHHhhcCcchhccchHHHHHHHHHHHHH
Confidence            888887 488999999999999998888887777666544

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=99.94  E-value=6.2e-26  Score=216.42  Aligned_cols=306  Identities=13%  Similarity=0.122  Sum_probs=203.0

Q ss_pred             hHHHHHHHHHHHhhccccchhhhHH-HHHHH-----hccCccccchhhhhhHHHHHHHHHHHhhhhcccccccc-cCCch
Q 015847           41 TELFSIWIIVLCTALPISSLFPFLY-FMIKD-----FQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADR-YGRKP  113 (399)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~dr-~Grr~  113 (399)
                      +.++.++...+...+......+.++ ++.++     +|.+..+      .+++.+++.++..+++++.|+++|| +|||+
T Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~------~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~   86 (491)
T 4aps_A           13 LGLSTLFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRAT------AASIMAIYASMVYLSGTIGGFVADRIIGARP   86 (491)
T ss_dssp             THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHTSCHHH
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhcCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHhccccchH
Confidence            4455566666666666666656665 44455     8999999      9999999999999999999999999 89999


Q ss_pred             hhHHHHHHHHHHHHHHhccchHHHHHHHHHHHhhhccchhhH-HHHHhhhccchh--hhHHHHHHHHHHHHHHhHHHHhh
Q 015847          114 VIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEH--QALGLSTVSTAWGIGLIIGPALG  190 (399)
Q Consensus       114 ~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~-~~~~~~~~~~~~--r~~~~~~~~~~~~~g~~~~p~i~  190 (399)
                      ++..+.++.+++.+++++++|++.++++|++.|++.+...+. .++++|++|+++  |+++++..+.+.++|..++|.++
T Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~  166 (491)
T 4aps_A           87 AVFWGGVLIMLGHIVLALPFGASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIV  166 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHSCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999998887775 999999999988  77888889999999999999999


Q ss_pred             hhhcCCCCCCCCcccccccccCCcchhhHHHHHHHHHHHHHHHHhc-ccCCCCCCCCCCc---cchhhhhhhh-------
Q 015847          191 GFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWL-PETLHRHNDDDDS---CDVSYDALES-------  259 (399)
Q Consensus       191 ~~l~~~~~~~~~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~-~e~~~~~~~~~~~---~~~~~~~~~~-------  259 (399)
                      +.+.+       ..|||+.         +.+.++..++..+..... |+..+++.+++++   .++..+..+.       
T Consensus       167 ~~l~~-------~~g~~~~---------f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~  230 (491)
T 4aps_A          167 GAAQE-------AAGYHVA---------FSLAAIGMFIGLLVYYFGGKKTLDPHYLRPTDPLAPEEVKPLLVKVSLAVAG  230 (491)
T ss_dssp             HHHHH-------HSCHHHH---------HHHHHHHHHHHHHHHHHHHHTTCCSCCSCCSCCCSHHHHHHHHHHCCCCCHH
T ss_pred             HHHHh-------hhhHHHH---------HHHHHHHHHHHHHHHHHhCcccccccccCCCCccccchhHHHHHHHHHHHHH
Confidence            99987       4455544         466655555544443322 3322211111111   0100000000       


Q ss_pred             -----------hhhhhh-------------------hccccCCcccccccccchhHHHHHHHHHHHhhhhhHHHHHHHhh
Q 015847          260 -----------ASAEVK-------------------EEEGREATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWA  309 (399)
Q Consensus       260 -----------~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  309 (399)
                                 ...+..                   ...++......+..+....+...+..++...........++.|.
T Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  310 (491)
T 4aps_A          231 FIAIIVVMNLVGWNSLPAYINLLTIVAIAIPVFYFAWMISSVKVTSTEHLRVVSYIPLFIAAVLFWAIEEQGSVVLATFA  310 (491)
T ss_dssp             HHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHHHC------------CTTHHHHHHHHHHHHHHHGGGGTHHHHHH
T ss_pred             HHHHHHHHHhccCcccccchhhhhHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHH
Confidence                       000000                   00000011111111222334444445555555556666777777


Q ss_pred             cCCcccCccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHH-----HHHHHHHHHHhHHhHH
Q 015847          310 NSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVAR-----IAGVLTIPLLTSYPYI  374 (399)
Q Consensus       310 ~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-----~~~~~~~~~~~~~~~~  374 (399)
                      .+.     .+.+..+.+......++...++.. +.+++.||++||+...     .+..+.++++.++...
T Consensus       311 ~~~-----~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~r~~~r~~~~~~~~~~~~~~~~~~~~~~~~~  374 (491)
T 4aps_A          311 AER-----VDSSWFPVSWFQSLNPLFIMLYTP-FFAWLWTAWKKNQPSSPTKFAVGLMFAGLSFLLMAIP  374 (491)
T ss_dssp             HHS-----CCCSSSCSGGGTTHHHHHHHHHHH-HHHHHHHHTTTC---CHHHHHHHHHHHHHHHTTTHHH
T ss_pred             HHH-----hccCccCHHHHhccchHHHHHHHH-HHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHH
Confidence            665     455556667777777888888874 7788999999876544     6677777776666554

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=99.89  E-value=3.6e-23  Score=193.03  Aligned_cols=294  Identities=11%  Similarity=0.124  Sum_probs=184.2

Q ss_pred             hHHHHHHHHHHHhhccccchhhhHHHHH-HHhccCccccchhhhhhHHHHHHHHHHHhhhhcccccccccCCchhhHHHH
Q 015847           41 TELFSIWIIVLCTALPISSLFPFLYFMI-KDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGT  119 (399)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~  119 (399)
                      +.++......++.........+.+|.+. +++|.+..+      .|++.+++.++..++++++|+++||+|||++++++.
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~------~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~~~   80 (417)
T 2cfq_A            7 TNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSD------TGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWII   80 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTTHHHHHHTTTCCCTTT------SHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHHH
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHH
Confidence            4555555555556666667778888654 568999999      999999999999999999999999999999999888


Q ss_pred             HHHHHHH---HHHhccchHH-HHHHHHHHHhhhccchhhH-HHHHhhhccc--hhhhHHHHHHHHHHHHHHhHHHHhhhh
Q 015847          120 ASVVIFN---TLFGLSVNFW-MAVLTRFLLGSLNGLLGPI-KAYACEIFRE--EHQALGLSTVSTAWGIGLIIGPALGGF  192 (399)
Q Consensus       120 ~~~~~~~---~~~~~~~~~~-~l~~~r~l~G~~~~~~~~~-~~~~~~~~~~--~~r~~~~~~~~~~~~~g~~~~p~i~~~  192 (399)
                      .+.+++.   ....+.+... .+...+.+.|++.+...+. .....++.++  ++|+..++.......+|..++|.++++
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~l~~~  160 (417)
T 2cfq_A           81 TGMLVMFAPFFIFIFGPLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGI  160 (417)
T ss_dssp             HHTTSCHHHHHHHTHHHHHHTTCCHHHHGGGSSTTHHHHTTHHHHHHHHHHHHHHHTCCHHHHSSSTTTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHH
Confidence            7765432   2122222211 2344555666555543332 4444444443  456777788888889999999999999


Q ss_pred             hcCCCCCCCCcccccccccCCcchhhHHHHHHHHHHHHHHHHhcccCCCCCCCCCCccchhhhhhhhhhhhhhhccccCC
Q 015847          193 LAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREA  272 (399)
Q Consensus       193 l~~~~~~~~~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  272 (399)
                      +.+        .+||.         ++++.++..++..+..+..+|++++..+++++.+.             ++++...
T Consensus       161 l~~--------~~~~~---------~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~  210 (417)
T 2cfq_A          161 MFT--------INNQF---------VFWLGSGCALILAVLLFFAKTDAPSSATVANAVGA-------------NHSAFSL  210 (417)
T ss_dssp             HHH--------HCSHH---------HHTTTTTTTTTHHHHSCSSCCCCSCSSCSSSSSSS-------------CCCCCCH
T ss_pred             HHH--------hchhH---------HHHHHHHHHHHHHHHHHHcCccccccccccccccc-------------ccccccH
Confidence            875        23443         33444444433333334444332211100000000             0000011


Q ss_pred             cccccccccchhHHHHHHHHHHHhhhhhHHHHHHHhhcCCcccCccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 015847          273 TPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILG  352 (399)
Q Consensus       273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~  352 (399)
                      .+.++.+++|+++...+..+........+..++|.|+.+....  .+.+....+...+...++.+++. +..+++.||++
T Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~~~~~~~-~~~g~l~dr~g  287 (417)
T 2cfq_A          211 KLALELFRQPKLWFLSLYVIGVSCTYDVFDQQFANFFTSFFAT--GEQGTRVFGYVTTMGELLNASIM-FFAPLIINRIG  287 (417)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSS--HHHHTHHHHHHHHHHHHHHHHHH-HHHHHHHHHHC
T ss_pred             HHHHHHhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--cCCChhHHHHHHHHHHHHHHHHH-HHHHHHHHHhc
Confidence            1234577888887766665554445555555677776543111  23445667888888888888887 48899999999


Q ss_pred             chhHHHHHHHHHHHHHhHHhH
Q 015847          353 PIMVARIAGVLTIPLLTSYPY  373 (399)
Q Consensus       353 ~~~~~~~~~~~~~~~~~~~~~  373 (399)
                      ||+.+..+..+.++..+.+.+
T Consensus       288 ~~~~l~~~~~~~~~~~~~~~~  308 (417)
T 2cfq_A          288 GKNALLLAGTIMSVRIIGSSF  308 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
Confidence            999988887777776655543

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=99.85  E-value=1.6e-21  Score=187.50  Aligned_cols=171  Identities=15%  Similarity=0.202  Sum_probs=140.3

Q ss_pred             HHHHHHHHHHhhccccchhhhHH-HHHHHhc------cCccccchhhhhhHHHHHHHHHHHhhhhccccccccc-CCchh
Q 015847           43 LFSIWIIVLCTALPISSLFPFLY-FMIKDFQ------IAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRY-GRKPV  114 (399)
Q Consensus        43 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~dr~-Grr~~  114 (399)
                      ++.+.+..++..+......+.++ ++.+++|      .+..+      .+++.+++.++..+++++.|+++||+ |||++
T Consensus        14 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~------~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~   87 (524)
T 2xut_A           14 IPYIIASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAV------AKDVFHSFVIGVYFFPLLGGWIADRFFGKYNT   87 (524)
T ss_dssp             CTHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSCCSSSTTTTT------HHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHhcchHH
Confidence            33445555556666555666666 4567789      99999      99999999999999999999999999 99999


Q ss_pred             hHHHHHHHHHHHHHHhccc-hHHHHHHHHHHHhhhccchhhH-HHHHhhhccchhhhHHHHH---HHHHHHHHHhHHHHh
Q 015847          115 IIMGTASVVIFNTLFGLSV-NFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLST---VSTAWGIGLIIGPAL  189 (399)
Q Consensus       115 l~~~~~~~~~~~~~~~~~~-~~~~l~~~r~l~G~~~~~~~~~-~~~~~~~~~~~~r~~~~~~---~~~~~~~g~~~~p~i  189 (399)
                      +.++.++.+++.+++++++ +++.+++.|++.|++.+...+. .+++.|++|+++|+++.+.   .+.+.++|..++|.+
T Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~  167 (524)
T 2xut_A           88 ILWLSLIYCVGHAFLAIFEHSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLS  167 (524)
T ss_dssp             HHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999998 9999999999999998887775 9999999999999876666   899999999999999


Q ss_pred             hhhhcCCCCCCCCcccccccccCCcchhhHHHHHHHHHHHHHHHHh
Q 015847          190 GGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFW  235 (399)
Q Consensus       190 ~~~l~~~~~~~~~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~  235 (399)
                      ++++.+       ..||         +.++.+.++..++..+....
T Consensus       168 ~~~l~~-------~~g~---------~~~f~~~~~~~~~~~~~~~~  197 (524)
T 2xut_A          168 MPLLLK-------NFGA---------AVAFGIPGVLMFVATVFFWL  197 (524)
T ss_dssp             STHHHH-------TSCH---------HHHHHHHHHHHHHHHHHHHS
T ss_pred             HHHHhc-------cccH---------HHHHHHHHHHHHHHHHHHHH
Confidence            999987       3444         44446666665555444433

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=99.58  E-value=5.6e-15  Score=138.79  Aligned_cols=174  Identities=12%  Similarity=0.066  Sum_probs=139.7

Q ss_pred             hHHHHHHHHHHHhhccccchhhhHHHHHHH-hccCccccchhhhhhHHHHHHHHHHHhhhhccccccccc--CCchhhHH
Q 015847           41 TELFSIWIIVLCTALPISSLFPFLYFMIKD-FQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRY--GRKPVIIM  117 (399)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~dr~--Grr~~l~~  117 (399)
                      +.++...+..++............|.+.++ +|.+..+      .+++.+...++..++.++.|++.||+  |||+.+..
T Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~------~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~  325 (451)
T 1pw4_A          252 KLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDK------SSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGV  325 (451)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHH
Confidence            455556666666666666777888877766 8999988      99999999999999999999999999  99999888


Q ss_pred             HHHHHH-HHHHHHhcc--chHHHHHHHHHHHhhhccchhhH-HHHHhhhccchhhhHHHHHHHHHHHH-HHhHHHHhhhh
Q 015847          118 GTASVV-IFNTLFGLS--VNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGI-GLIIGPALGGF  192 (399)
Q Consensus       118 ~~~~~~-~~~~~~~~~--~~~~~l~~~r~l~G~~~~~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~-g~~~~p~i~~~  192 (399)
                      +..+.. ++.++..+.  .+.+.+.+..++.|++.+...+. .+++.|.+|+++|++++|+.+....+ |..++|.+.+.
T Consensus       326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~  405 (451)
T 1pw4_A          326 FFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGY  405 (451)
T ss_dssp             HHHHHHHHHHHHTTSCCTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            877766 677776665  36777888888889887776664 89999999999999999999999999 99999999999


Q ss_pred             hcCCCCCCCCcccccccccCCcchhhHHHHHHHHHHHHHHHHhc
Q 015847          193 LAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWL  236 (399)
Q Consensus       193 l~~~~~~~~~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (399)
                      +.+                ..++...+.+.+++.++..+..+.+
T Consensus       406 l~~----------------~~g~~~~~~~~~~~~~~~~~~~~~~  433 (451)
T 1pw4_A          406 TVD----------------FFGWDGGFMVMIGGSILAVILLIVV  433 (451)
T ss_dssp             HHH----------------SSCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHH----------------hcCcHHHHHHHHHHHHHHHHHHHHH
Confidence            998                3345555566666666655554444

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=99.49  E-value=7.5e-14  Score=129.91  Aligned_cols=141  Identities=18%  Similarity=0.129  Sum_probs=112.1

Q ss_pred             hhHHHHHHHHHHHhhhhcccccccccCCchhhHHHHHHHHHHHHHHhccchHHHHHHHHHHHhhhccchhh-HHHHHhhh
Q 015847           84 AGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGP-IKAYACEI  162 (399)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~-~~~~~~~~  162 (399)
                      .++..+...++..++.++.|+++||+|||+++..+.++.+++.+..++.++.+.+++..++.+++.+...+ ...+++|.
T Consensus       261 ~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  340 (417)
T 2cfq_A          261 FGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYITSQ  340 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHTTHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            67888888888889999999999999999999999888888888888888888888777777877655555 48899999


Q ss_pred             ccchhhhHHHHH-HHHHHHHHHhHHHHhhhhhcCCCCCCCCcccccccccCCcchhhHHHHHHHHHHHHHH-HHhcccCC
Q 015847          163 FREEHQALGLST-VSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIA-AFWLPETL  240 (399)
Q Consensus       163 ~~~~~r~~~~~~-~~~~~~~g~~~~p~i~~~l~~~~~~~~~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~-~~~~~e~~  240 (399)
                      +|++.|+++.+. ++....+|+.++|.++|++.+                .+++...+.+.++..++..+. ....||++
T Consensus       341 ~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~----------------~~g~~~~f~~~~~~~l~~~~~~~~~~~~~~  404 (417)
T 2cfq_A          341 FEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYE----------------SIGFQGAYLVLGLVALGFTLISVFTLSGPG  404 (417)
T ss_dssp             SCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHH----------------HSHHHHHHHHHHHHHHHHHHHHTTSSCCSC
T ss_pred             CCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHH----------------hcCcHHHHHHHHHHHHHHHHHHHhhhcCCC
Confidence            999999999998 488889999999999999987                333444456666666665544 33345433

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=99.47  E-value=2.3e-13  Score=127.26  Aligned_cols=145  Identities=10%  Similarity=0.045  Sum_probs=117.4

Q ss_pred             HHHHHHHHHHHhhccccchhhhHHHH-HHH-hccCccccchhhhhhHHHHHHHHHHHhhhhcccccccccCCchhhHHHH
Q 015847           42 ELFSIWIIVLCTALPISSLFPFLYFM-IKD-FQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGT  119 (399)
Q Consensus        42 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~  119 (399)
                      .++...+..++............|.+ .++ +|.+..+      .++..+...++..++.++.|+++||+|||+++..+.
T Consensus       259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~------~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~  332 (438)
T 3o7q_A          259 HWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGF------AANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYA  332 (438)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcchhH------HHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHH
Confidence            44444445555555555666777766 555 5999988      999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhccchHHHHHHHHHHHhhhccchhhH-HHHHhhhccchhhhHHHHHHHHHHHHHHhHHHHhhhhhcC
Q 015847          120 ASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQ  195 (399)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~i~~~l~~  195 (399)
                      ++.+++.++..+.++.+.++.. ++.|++.+...+. .++..|.+|++ |+.+.++.. ...+|..++|.+.|++.+
T Consensus       333 ~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~g~~~~~~~~g~l~~  406 (438)
T 3o7q_A          333 LIAMALCLISAFAGGHVGLIAL-TLCSAFMSIQYPTIFSLGIKNLGQD-TKYGSSFIV-MTIIGGGIVTPVMGFVSD  406 (438)
T ss_dssp             HHHHHHHHHHHHCCHHHHHHHH-HHHHHHHTTHHHHHHHHHHSSCGGG-HHHHHHHHH-HTTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCcHHHHHH-HHHHHHHHHHHHHHHHHHHhhcccc-ccchhhHHH-HHHHHHHHHHHHHHHHHH
Confidence            9999998888888877665544 7888887777775 88889999866 888888776 567999999999999998

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=99.37  E-value=1.2e-12  Score=124.46  Aligned_cols=144  Identities=10%  Similarity=-0.036  Sum_probs=110.3

Q ss_pred             HHHHHHHhhccccchhhhHHHHHH-HhccCccccchhhhhhHHHHHHHHHHHhhhhcccccccccCCchhhH-----HHH
Q 015847           46 IWIIVLCTALPISSLFPFLYFMIK-DFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVII-----MGT  119 (399)
Q Consensus        46 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~dr~Grr~~l~-----~~~  119 (399)
                      .....+............++.+.+ .++.+..+      .++..+...++..++.++.|++.||+|||+...     .+.
T Consensus       288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~~~~~~~~~  361 (491)
T 4aps_A          288 LFIAAVLFWAIEEQGSVVLATFAAERVDSSWFP------VSWFQSLNPLFIMLYTPFFAWLWTAWKKNQPSSPTKFAVGL  361 (491)
T ss_dssp             HHHHHHHHHHHHGGGGTHHHHHHHHSCCCSSSC------SGGGTTHHHHHHHHHHHHHHHHHHHTTTC---CHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhccHHHHHHHHHHhccCccC------HHHHhccchHHHHHHHHHHHHHHHHHhccCCCchHHHHHHH
Confidence            333334344444445556665554 46766566      888888999999999999999999999987655     677


Q ss_pred             HHHHHHHHHHhccc---------hHHHHHHHHHHHhhhccchhh-HHHHHhhhccchhhhHHHHHHHHHHHHHHhHHHHh
Q 015847          120 ASVVIFNTLFGLSV---------NFWMAVLTRFLLGSLNGLLGP-IKAYACEIFREEHQALGLSTVSTAWGIGLIIGPAL  189 (399)
Q Consensus       120 ~~~~~~~~~~~~~~---------~~~~l~~~r~l~G~~~~~~~~-~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~i  189 (399)
                      ++.+++.++.....         +.+.+.+..++.|++.+...+ ..+++.|.+|+++|++++|+.+....+|..++|.+
T Consensus       362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~  441 (491)
T 4aps_A          362 MFAGLSFLLMAIPGALYGTSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQL  441 (491)
T ss_dssp             HHHHHHHTTTHHHHHHCCCCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            77777766665532         667777888899998888666 49999999999999999999999999999999999


Q ss_pred             hhhhcC
Q 015847          190 GGFLAQ  195 (399)
Q Consensus       190 ~~~l~~  195 (399)
                      .+.+.+
T Consensus       442 ~~~~~~  447 (491)
T 4aps_A          442 VTLYNA  447 (491)
T ss_dssp             GGGGGG
T ss_pred             HHHHhc
Confidence            998875

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=99.33  E-value=1.6e-12  Score=123.42  Aligned_cols=183  Identities=13%  Similarity=0.044  Sum_probs=122.7

Q ss_pred             HHHHHHHHhhccccchhhhHHHHHHHhccCccccchhhhhhHHHHHHHHHHHhhhhcccccccccCCchhhHHHHHHHHH
Q 015847           45 SIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVI  124 (399)
Q Consensus        45 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~  124 (399)
                      ......+....+.+.+..+.+.+.++.+.+...      .........+...++.++.+++.||+|||+.++.+.....+
T Consensus       281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~  354 (491)
T 4gc0_A          281 GVMLSIFQQFVGINVVLYYAPEVFKTLGASTDI------ALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAI  354 (491)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHSSCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhhhHHHhcchHHHHhcCCCccc------hhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHH
Confidence            344444445555566666777888888877776      66777777888889999999999999999999998888877


Q ss_pred             HHHHHhcc-----chHHHHHHHH-HHHhhhccchhhHHHHHhhhccchhhhHHHHHHHHHHHHHHhHHHHhhhhhcCCCC
Q 015847          125 FNTLFGLS-----VNFWMAVLTR-FLLGSLNGLLGPIKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAE  198 (399)
Q Consensus       125 ~~~~~~~~-----~~~~~l~~~r-~l~G~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~i~~~l~~~~~  198 (399)
                      +.+..+..     ++...+...- +..+++.+.....+.+.+|.+|.+.|++++|+......+|..+++.+...+.+.  
T Consensus       355 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~--  432 (491)
T 4gc0_A          355 GMFSLGTAFYTQAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKN--  432 (491)
T ss_dssp             HHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHH--
T ss_pred             HHHHHHHHHhcccchHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence            76655432     2222222222 222233333333489999999999999999999999999999998887776541  


Q ss_pred             CCCCcccccccccCCcchhhHHHHHHHHHHH-HHHHHhcccCCCCC
Q 015847          199 KYPNLFSSESLFGKFPYFLPCLCISLFAFGV-TIAAFWLPETLHRH  243 (399)
Q Consensus       199 ~~~~~~gw~~~f~~~~~~~~~~~~~~~~~~~-~~~~~~~~e~~~~~  243 (399)
                            .|...  ..++..++++.++++++. ++.++++||++.+.
T Consensus       433 ------~~~~~--~~~~~~~~~i~~~~~~~~~i~~~~~~PETkg~t  470 (491)
T 4gc0_A          433 ------SWLVA--HFHNGFSYWIYGCMGVLAALFMWKFVPETKGKT  470 (491)
T ss_dssp             ------HHHHH--HHTTCHHHHHHHHHHHHHHHHHHHHCCCCTTCC
T ss_pred             ------HHHHh--hhhhhHHHHHHHHHHHHHHHHHHheecCCCCCC
Confidence                  01000  112233345555555554 44568899987653

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=98.99  E-value=3.3e-11  Score=110.22  Aligned_cols=145  Identities=13%  Similarity=0.079  Sum_probs=107.2

Q ss_pred             HHHHHHHHHHHhhccccchhhhHHHHH-HHhccCccccchhhhhhHHHHHHHHHHHhhhhcccccccccCCchhhHHHHH
Q 015847           42 ELFSIWIIVLCTALPISSLFPFLYFMI-KDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTA  120 (399)
Q Consensus        42 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~  120 (399)
                      .++...+..++............|.+. +++|.++.+      .+++.+...++..++.++.|++.||+|+|  +..+..
T Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~------~g~~~~~~~~~~~~~~~~~~~l~~r~~~~--~~~~~~  271 (375)
T 2gfp_A          200 GFNCYLLMLIGGLAGIAAFEACSGVLMGAVLGLSSMT------VSILFILPIPAAFFGAWFAGRPNKRFSTL--MWQSVI  271 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHCSCSSHHHHHHHHHH------HHHHHHTHHHHHHHHHHHHHTTTTHHHHH--HHHHHH
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHH
Confidence            344444555555555555566666554 448888888      99999999999999999999999999873  233332


Q ss_pred             H-HHHHHH--HHhc--cchHHHHHHHHHHHhhhccchhhH-HHHHhhhccchhhhHHHHHHHHHHHHHHhHHHHhhhhhc
Q 015847          121 S-VVIFNT--LFGL--SVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLA  194 (399)
Q Consensus       121 ~-~~~~~~--~~~~--~~~~~~l~~~r~l~G~~~~~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~i~~~l~  194 (399)
                      . ...+..  ....  .++.+.+++..++.|++.+...+. .+++.|.+| ++|+++.++.+....+|..++|.+.+.+.
T Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~  350 (375)
T 2gfp_A          272 CCLLAGLLMWIPDWFGVMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFP-FLAGTAGALVGGLQNIGSGVLASLSAMLP  350 (375)
T ss_dssp             HHHHTSSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHTSSTTHHHHHTHHH-HHHHHHHHHHHHHHHHHHHCCSTTCTHHH
T ss_pred             HHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCC-cccchHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            2 222222  1111  236677777888899988877775 999999998 89999999999999999999999999987


Q ss_pred             C
Q 015847          195 Q  195 (399)
Q Consensus       195 ~  195 (399)
                      +
T Consensus       351 ~  351 (375)
T 2gfp_A          351 Q  351 (375)
T ss_dssp             H
T ss_pred             c
Confidence            6

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=98.84  E-value=8.8e-09  Score=98.51  Aligned_cols=112  Identities=13%  Similarity=0.025  Sum_probs=86.7

Q ss_pred             hhHHHHHHHHHHHhhhhcccccc----cccCC----chhhHHHHHHHHHHHHHHhcc---------chHHHHHHHHHHHh
Q 015847           84 AGYVGSSFMFGRALTSVFWGLVA----DRYGR----KPVIIMGTASVVIFNTLFGLS---------VNFWMAVLTRFLLG  146 (399)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~G~l~----dr~Gr----r~~l~~~~~~~~~~~~~~~~~---------~~~~~l~~~r~l~G  146 (399)
                      .+++.....++..+..++.+++.    ||.|+    ++.+.++.++.+++.++.++.         .+.+.+++..++.|
T Consensus       337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g  416 (524)
T 2xut_A          337 PAMMQALNPLLVMLLIPFNNFVLYPAIERMGVKLTALRKMGAGIAITGLSWIVVGTIQLMMDGGSALSIFWQILPYALLT  416 (524)
T ss_dssp             HHHHHTTSGGGHHHHGGGTTTC------------CCHHHHHTHHHHHHHHHHTTTTTTTTTTTTCCCCSHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhHHHHHhhhHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCHHHHHHHHHHHH
Confidence            56666666666677777777765    55543    356677888888887777663         36677778889999


Q ss_pred             hhccchhhH-HHHHhhhccchhhhHHHHHHHHHHHHHHhHHHHhhhhhcC
Q 015847          147 SLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQ  195 (399)
Q Consensus       147 ~~~~~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~i~~~l~~  195 (399)
                      ++.+...+. .+++.|.+|+++|++++|+.+....+|..++|.+.+.+.+
T Consensus       417 ~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~~~~  466 (524)
T 2xut_A          417 FGEVLVSATGLEFAYSQAPKAMKGTIMSFWTLSVTVGNLWVLLANVSVKS  466 (524)
T ss_dssp             HHHHHHHHHHTTTHHHHCCTTCCTTTHHHHGGGHHHHHHHHHHHHHHTTS
T ss_pred             HHHHHHHHHHHHHHHHhCcHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            998887775 8999999999999999999999999999999999999986

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	399
d1pw4a_	447	f.38.1.1 (A:) Glycerol-3-phosphate transporter {Es	8e-11
d1pv7a_	417	f.38.1.2 (A:) Lactose permease {Escherichia coli [	6e-07

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} Length = 447

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

 Score = 60.8 bits (146), Expect = 8e-11
 Identities = 42/324 (12%), Positives = 88/324 (27%), Gaps = 24/324 (7%)

Query: 84  AGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRF 143
            G+  S        +    G V+DR   +  +  G           G       ++   F
Sbjct: 61  LGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMF 120

Query: 144 LLGSLNGLLGPIKAYAC-----EIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAE 198
           +L  L G    +    C       + ++ +   +S  + A  +G  I P L         
Sbjct: 121 VLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLL------ 174

Query: 199 KYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSYDALE 258
                     +     +       +  A  V + AF +     +        +   D  +
Sbjct: 175 ---------GMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKNDYPD 225

Query: 259 SASAEVKEEEGREATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGL 318
             + + ++E   +    + +L N  L    I      L      +    +    K     
Sbjct: 226 DYNEKAEQELTAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALD 285

Query: 319 NYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLL----TSYPYI 374
             S        A    +LL   +S   F        +       +   +        P +
Sbjct: 286 KSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTV 345

Query: 375 AMLSGFGLAFLLNCASVVKNLLSV 398
            M+    + FL+    ++  L ++
Sbjct: 346 DMICMIVIGFLIYGPVMLIGLHAL 369

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} Length = 417

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

 Score = 49.0 bits (115), Expect = 6e-07
 Identities = 20/211 (9%), Positives = 55/211 (26%), Gaps = 14/211 (6%)

Query: 42  ELFSIWIIVLCTALPISSLFPFL-YFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSV 100
             +   +        + + FPF   ++     I+       S  G + ++      L   
Sbjct: 8   NFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHIS------KSDTGIIFAAISLFSLLFQP 61

Query: 101 FWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI----- 155
            +GL++D+ G +  ++     +++    F + +   +      +   + G+         
Sbjct: 62  LFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNILVGSIVGGIYLGFCFNAG 121

Query: 156 --KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKF 213
                A                     +G  +G ++ G +     ++     S       
Sbjct: 122 APAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFTINNQFVFWLGSGCALILA 181

Query: 214 PYFLPCLCISLFAFGVTIAAFWLPETLHRHN 244
                    +  +  V  A            
Sbjct: 182 VLLFFAKTDAPSSATVANAVGANHSAFSLKL 212

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	399
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	99.97
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	99.87
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	99.53
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	99.42

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=99.97  E-value=2.3e-30  Score=241.42  Aligned_cols=289  Identities=12%  Similarity=0.047  Sum_probs=216.6

Q ss_pred             hhHHHHHHHHHHHhhccccchhhhHHHHHHHhccCccccchhhhhhHHHHHHHHHHHhhhhcccccccccCCchhhHHHH
Q 015847           40 ITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGT  119 (399)
Q Consensus        40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~  119 (399)
                      |..+..++++.+..+++...+....|.+. |+|.|..+      .|++.+++.++..++++++|+++||+|||+++.++.
T Consensus        24 w~i~~~~~~~~~~~~~~~~~~~~~~p~~~-~~g~s~~~------~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~   96 (447)
T d1pw4a_          24 WQIFLGIFFGYAAYYLVRKNFALAMPYLV-EQGFSRGD------LGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGL   96 (447)
T ss_dssp             HHHHHHHHHHHHHHHHHHTSHHHHHHHTT-SSTTCSSC------HHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhCcCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHH
Confidence            44444556666777777777777777664 68999999      999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhcc----chHHHHHHHHHHHhhhccchhhH-HHHHhhhccchhhhHHHHHHHHHHHHHHhHHHHhhhhhc
Q 015847          120 ASVVIFNTLFGLS----VNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLA  194 (399)
Q Consensus       120 ~~~~~~~~~~~~~----~~~~~l~~~r~l~G~~~~~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~p~i~~~l~  194 (399)
                      ++.+++.++++++    ++++.+++.|++.|++.+...+. .++++|++|+++|++++++.+.+..+|..++|.+++.+.
T Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~  176 (447)
T d1pw4a_          97 ILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGM  176 (447)
T ss_dssp             HHHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHH
T ss_pred             HHHHHHHhhccccchhhhhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhcccccccccccccchhhhhhhhhhhhHh
Confidence            9999999888776    46788999999999998887774 999999999999999999999999999999999998877


Q ss_pred             CCCCCCCCcccccccccCCcchhhHHHHHHHHHHH-HHHHHhcccCCCCCCCCCCccchhhhhhhhhhhhhhhccccCCc
Q 015847          195 QPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGV-TIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREAT  273 (399)
Q Consensus       195 ~~~~~~~~~~gw~~~f~~~~~~~~~~~~~~~~~~~-~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  273 (399)
                      +.      ..+||+.|         ++.+++.++. ++.....+|+++....+..++.+. +..+...++.+++......
T Consensus       177 ~~------~~~w~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~  240 (447)
T d1pw4a_         177 AW------FNDWHAAL---------YMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKN-DYPDDYNEKAEQELTAKQI  240 (447)
T ss_dssp             HH------TCCSTTCT---------HHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTTTCC-C-------------CCTHH
T ss_pred             hh------hhcccccc---------hhhhhhHHHHHHHHHHhcccchhhcccchhhhhhh-hcccchhhccccccchhhH
Confidence            52      23455544         5555555444 444555666554433222211111 1111111111111122223


Q ss_pred             ccccccccchhHHHHHHHHHHHhhhhhHHHHHHHhhcCCcccCccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 015847          274 PKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGP  353 (399)
Q Consensus       274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~  353 (399)
                      ..+..++++.++......++..........+.+.|+.+.     ++++..+.+.......+..+++.. +.+++.||.++
T Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~  314 (447)
T d1pw4a_         241 FMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEV-----KHFALDKSSWAYFLYEYAGIPGTL-LCGWMSDKVFR  314 (447)
T ss_dssp             HHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHBTTB-----SCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHTST
T ss_pred             HHHHHHcCchHHHHHHHhhhhhhhhhcchhhhhhhcccc-----cccccchhhhhhhcchhhhhhhhh-hhhhhhhhccc
Confidence            355678889999888888888888888888999998876     789999999999999999999984 88999999987


Q ss_pred             hhHH
Q 015847          354 IMVA  357 (399)
Q Consensus       354 ~~~~  357 (399)
                      ++..
T Consensus       315 ~~~~  318 (447)
T d1pw4a_         315 GNRG  318 (447)
T ss_dssp             TCHH
T ss_pred             cccc
Confidence            6543

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=99.87  E-value=2e-21  Score=177.55  Aligned_cols=299  Identities=11%  Similarity=0.106  Sum_probs=192.6

Q ss_pred             hhHHHHHHHHHHHhhccccchhhhHHH-HHHHhccCccccchhhhhhHHHHHHHHHHHhhhhcccccccccCCchhhHHH
Q 015847           40 ITELFSIWIIVLCTALPISSLFPFLYF-MIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMG  118 (399)
Q Consensus        40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~dr~Grr~~l~~~  118 (399)
                      .+.++.+....++..+......+.+|. +.+++|.|..+      +|++.+++.++..++++++|+++||+||||+++++
T Consensus         6 n~~~~~l~~~~f~~~~~~~~~~~~l~~~l~~~~g~s~~~------~g~i~s~~~l~~~i~~~~~G~l~Dr~grr~~l~~~   79 (417)
T d1pv7a_           6 NTNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSD------TGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWI   79 (417)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHH------HHHHHHHHHHHHHHTHHHHHHHHHHHTTCTHHHHH
T ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHH
Confidence            356777777788888888888899986 56779999999      99999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhccchHHHH----HHHHHHHhhhccchhh-HHHHHhhhcc--chhhhHHHHHHHHHHHHHHhHHHHhhh
Q 015847          119 TASVVIFNTLFGLSVNFWMA----VLTRFLLGSLNGLLGP-IKAYACEIFR--EEHQALGLSTVSTAWGIGLIIGPALGG  191 (399)
Q Consensus       119 ~~~~~~~~~~~~~~~~~~~l----~~~r~l~G~~~~~~~~-~~~~~~~~~~--~~~r~~~~~~~~~~~~~g~~~~p~i~~  191 (399)
                      ..+..++..+..+..+....    ++.+.+.+.+.+.... ......+..+  .+++.+..+........+..++|.+++
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (417)
T d1pv7a_          80 ITGMLVMFAPFFIFIFGPLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVG  159 (417)
T ss_dssp             HHHHHHTHHHHHHHTHHHHHHTTCHHHHHHTTTTGGGGGTTHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhcccccccchhhcccccccchhhhhHHHHHHHhhhhcccccccccccc
Confidence            99988888888776655543    3444444444333332 3333333333  234556677778888899999999999


Q ss_pred             hhcCCCCCCCCcccccccccCCcchhhHHHHHHHHHHHHHHHHhcccCCCCCCCCCCccchhhhhhhhhhhhhhhccccC
Q 015847          192 FLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGRE  271 (399)
Q Consensus       192 ~l~~~~~~~~~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  271 (399)
                      .+.+        .+|        ++..........+...+..+..+|+++..++++++.+..              +...
T Consensus       160 ~l~~--------~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~  209 (417)
T d1pv7a_         160 IMFT--------INN--------QFVFWLGSGCALILAVLLFFAKTDAPSSATVANAVGANH--------------SAFS  209 (417)
T ss_dssp             HHHH--------HCH--------HHHHHHHHHHHHHHHHHHHSSCCCSCSSSCSSHHHHSCC--------------CCCC
T ss_pred             cccc--------ccc--------cccccchhhHHHHHHHHHHHHhcccccchhhhhhhhhhc--------------cccc
Confidence            9875        111        122223333333444455555666554433322111110              0011


Q ss_pred             CcccccccccchhHHHHHHHHHHHhhhhhHHHHHHHhhcCCcccCccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 015847          272 ATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERIL  351 (399)
Q Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~  351 (399)
                      .....+..+++..+....................+.+....  ....+.+....+.......++..++.. ..+++.||.
T Consensus       210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~r~  286 (417)
T d1pv7a_         210 LKLALELFRQPKLWFLSLYVIGVSCTYDVFDQQFANFFTSF--FATGEQGTRVFGYVTTMGELLNASIMF-FAPLIINRI  286 (417)
T ss_dssp             HHHHHHHTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS--SSCHHHHHHHHHHHHHHHHHHHHHHHT-THHHHHHHH
T ss_pred             ccccccccccccccchhhhhHHHHHHHHhhhcccccccccc--ccccccchhhhcccccccccccccchh-hhhhhhccc
Confidence            11122233344444433333333333333333333333222  122556777788888888888888884 889999999


Q ss_pred             cchhHHHHHHHHHHHHHhHHhHHHHH
Q 015847          352 GPIMVARIAGVLTIPLLTSYPYIAML  377 (399)
Q Consensus       352 ~~~~~~~~~~~~~~~~~~~~~~~~~~  377 (399)
                      ++++.+..+..+..++.+.+.+.++.
T Consensus       287 ~~~~~~~~~~~~~~~~~~~~~~~~~~  312 (417)
T d1pv7a_         287 GGKNALLLAGTIMSVRIIGSSFATSA  312 (417)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHTCCCH
T ss_pred             ccccchhhhHHHHHHhhhcccccccc
Confidence            99999999988888888777665443

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=99.53  E-value=2.5e-15  Score=136.48  Aligned_cols=140  Identities=18%  Similarity=0.131  Sum_probs=118.1

Q ss_pred             hhHHHHHHHHHHHhhhhcccccccccCCchhhHHHHHHHHHHHHHHhccchHHHHHHHHHHHhhhccchhhH-HHHHhhh
Q 015847           84 AGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEI  162 (399)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~-~~~~~~~  162 (399)
                      .+...+...++..++..+.+++.||+|+|+.+.++.++.+++.+...+.++.+.+++..++.|++.+...+. .+++.|.
T Consensus       261 ~~~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~  340 (417)
T d1pv7a_         261 FGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYITSQ  340 (417)
T ss_dssp             HHHHHHHHHHHHHHHHTTHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hcccccccccccccchhhhhhhhcccccccchhhhHHHHHHhhhccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            778888888999999999999999999999999999999999999999999999999999999998887775 9999999


Q ss_pred             ccchhhhHHHHHH-HHHHHHHHhHHHHhhhhhcCCCCCCCCcccccccccCCcchhhHHHHHHHHHHHHHH-HHhcccC
Q 015847          163 FREEHQALGLSTV-STAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIA-AFWLPET  239 (399)
Q Consensus       163 ~~~~~r~~~~~~~-~~~~~~g~~~~p~i~~~l~~~~~~~~~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~-~~~~~e~  239 (399)
                      +|+++|+++.+.. +....+|..++|.++|++.+       ..|         ++..+.+.+++.++..+. .+.++++
T Consensus       341 ~~~~~~~~~~~~~~~~~~~~g~~i~~~~~G~l~~-------~~g---------~~~~~~~~~~~~~~~~~~~~~~l~~~  403 (417)
T d1pv7a_         341 FEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYE-------SIG---------FQGAYLVLGLVALGFTLISVFTLSGP  403 (417)
T ss_dssp             SCGGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHH-------HHC---------HHHHHHHHHHHHHHHHHHHHHHSCCS
T ss_pred             CCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHC---------HHHHHHHHHHHHHHHHHHHHHhhcCC
Confidence            9999999999985 56778999999999999998       344         444446666666654444 4555543

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=99.42  E-value=1.5e-13  Score=126.35  Aligned_cols=149  Identities=13%  Similarity=0.054  Sum_probs=108.0

Q ss_pred             hHHHHHHHHHHHhhccccchhhhHHHH-HHHhccCccccchhhhhhHHHHHHHHHHHhhhhcccccccccCCchhhHHHH
Q 015847           41 TELFSIWIIVLCTALPISSLFPFLYFM-IKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGT  119 (399)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~  119 (399)
                      +.++......++............|.+ .+.++.+..+      .++..+...++..++.++.|+++||++||+......
T Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~  322 (447)
T d1pw4a_         249 KLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDK------SSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGV  322 (447)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHH
T ss_pred             chHHHHHHHhhhhhhhhhcchhhhhhhcccccccccch------hhhhhhcchhhhhhhhhhhhhhhhhccccccccccc
Confidence            444444444555555555555566654 4567888888      999999999999999999999999999876443333


Q ss_pred             HHHH---HHHHHHhc--cchHHHHHHHHHHHhhhccchhh-HHHHHhhhccchhhhHHHHHHHHHHHH-HHhHHHHhhhh
Q 015847          120 ASVV---IFNTLFGL--SVNFWMAVLTRFLLGSLNGLLGP-IKAYACEIFREEHQALGLSTVSTAWGI-GLIIGPALGGF  192 (399)
Q Consensus       120 ~~~~---~~~~~~~~--~~~~~~l~~~r~l~G~~~~~~~~-~~~~~~~~~~~~~r~~~~~~~~~~~~~-g~~~~p~i~~~  192 (399)
                      ....   ++......  ..+.+...++-++.|++.+...+ ...+..|.+|++.|+++.|+.+....+ |..++|.+.|+
T Consensus       323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~g~~~~~~~~g~  402 (447)
T d1pw4a_         323 FFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGY  402 (447)
T ss_dssp             HHHHHHHHHHHHTTSCCTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3222   22222222  45677777777888887766665 488999999999999999999887776 56778999999


Q ss_pred             hcC
Q 015847          193 LAQ  195 (399)
Q Consensus       193 l~~  195 (399)
                      +.+
T Consensus       403 ~~~  405 (447)
T d1pw4a_         403 TVD  405 (447)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            998