Citrus Sinensis ID: 015851

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------40
Protein Sequence
MDPQRRQGPSVPERKGQKRKLDEETVIGDEQQQMQQREISSSSAGTSSSDARQALLSEVSAQVNVLNTTFSWLEADRAAAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQVITVSVLPAILIFIIINECQLEVLAFVLSEMVLLFCR
Secondary Structure (PSIPRED)
ccccccccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHccccHHHHHHHHccccHHHHHccccccccccccccccccHHHHHHHHHHHHHcccccHHHHHHHHcccHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHccccccHHHHHHcccHHHHHHHcccccHHHHHHHHHHHHHccccccHHHHHHHHcccHHHHHHccccccHHHHHHHHHHHHHHHccccHHHHHHHHccccHHHHHHHccccHHHHHHHHHHHHHHHcccHHHHHHHHHcccHHHHHHHcccccHHHHHHHHHHHHHHHHHHHcccHHHHHHccccccHHHHHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
ccccccccccccHHHHHHHHHHHHEccccHHHHHHHHHHHHHHccccccccHHHHHHHccccHHHHHHHcccccccHHHHHHHHHHHHHHccccHHHHHHEHccHHHHHHHHHcccccccccHccccccHHHHHHHHHHHHHHccccHHHHEEEccccHHHHHHHHcccHHHHHccccHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHccccHHHHHHHHccccHHHHHHHHccccHHHHHHHHHHHHHHccccHHHHHHHHHccHHHHHHHHcccccHHHHHHHHHHHHHHccccHHHHHHHHHcccHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHccccHHHHHHccccHHHHHHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
mdpqrrqgpsvperkgqkrkldeetvIGDEQQQMQQreissssagtsssDARQALLSEVSAQVNVLNTTFSWLEADRAAAKRATHVLAELAKNEEVVNWIVEGGAVPALVkhlqapptseadrnlkpfeheveKGSAFALGLlavkpehqqlivdNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNlahenssiktrvrmeggipplvelLEFTDTKVQRAAAGALRTLafkndenknqivecnALPTLILMLRSEDSAIHYEAVGVIGnlvhsspnikKEVLAAGALQPVIGLLSSCCSESQREAALLLGQfaatdsdckvhivqrgavrpliemlqspdvqLREMSAFALGRLAQVITVSVLPAILIFIIINECQLEVLAFVLSEMVLLFCR
Flexible Loop (DISEMBL)
mdpqrrqgpsvperkgqkrkldeetvigdeqqqmqqreissssagtSSSDARQALLSEVSAQVNVLNTTFSWLEADRAAAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAitnlahenssiktrvrmEGGIPPLVELLEFTDTKVQRAAAGALRtlafkndenknqiVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQVITVSVLPAILIFIIINECQLEVLAFVLSEMVLLFCR
Low Complexity Region (SEG)
MDPQRRQGPSVPERKGQKRKLDEETVIGDEQQQMQQREIssssagtsssDARQALLSEVSAQVNVLNTTFSWLEADRAAAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQVITVSVLPAILIFIIINECQLEVLAFVLSEMVLLFCR
Disordered region (IsUnstruct)
**********************************************************VSAQVNVLNTTFSWLEADRAAAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHL*********************GSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQVITVSVLPAILIFIIINECQLEVLAFVLSEMVLLFC*
Disordered Region (DISOPRED)
***********************************************************SAQVNVLNTTFSWLEADRAAAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQVITVSVLPAILIFIIINECQLEVLAFVLSEMVLLFCR
Disordered Region (DISEMBL)
***********************ETVIG************************QALLSEVSAQVNVLNTTFSWLEADRAAAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQVITVSVLPAILIFIIINECQLEVLAFVLSEMVLLFCR
Disordered Region (DISPRO)
******QGPSVPERKGQKRKLDEETVIGDEQQQMQQREISSSSAGTSSSDARQALLSEVSAQVNVLNTTFSWLEADRAAAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQVITVSVLPAILIFIIINECQLEVLAFVLSEMVLLFCR
Transmembrane Helix (TMHMM)
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Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
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Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDPQRRQGPSVPERKGQKRKLDEETVIGDEQQQMQQREISSSSAGTSSSDARQALLSEVSAQVNVLNTTFSWLEADRAAAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQVITVSVLPAILIFIIINECQLEVLAFVLSEMVLLFCR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	399	2.2.26 [Sep-21-2011]
B9DHT4	710	ARM REPEAT PROTEIN INTERA	yes	no	0.874	0.491	0.805	1e-164
B7U179	737	ARMADILLO BTB ARABIDOPSIS	no	no	0.769	0.416	0.627	1e-101
P0CM60	630	Vacuolar protein 8 OS=Cry	yes	no	0.573	0.363	0.321	3e-19
P0CM61	630	Vacuolar protein 8 OS=Cry	N/A	no	0.573	0.363	0.321	3e-19
Q4WVW4	578	Vacuolar protein 8 OS=Neo	yes	no	0.521	0.359	0.328	4e-18
Q4I1B1	559	Vacuolar protein 8 OS=Gib	yes	no	0.533	0.381	0.327	5e-18
Q2U5T5	578	Vacuolar protein 8 OS=Asp	yes	no	0.521	0.359	0.324	9e-18
Q6BTZ4	560	Vacuolar protein 8 OS=Deb	yes	no	0.518	0.369	0.310	2e-16
Q59MN0	585	Vacuolar protein 8 OS=Can	N/A	no	0.513	0.350	0.316	1e-15
Q6C5Y8	573	Vacuolar protein 8 OS=Yar	yes	no	0.521	0.363	0.310	1e-15

>sp|B9DHT4|ARIA_ARATH ARM REPEAT PROTEIN INTERACTING WITH ABF2 OS=Arabidopsis thaliana GN=ARIA PE=1 SV=2

 Score =  579 bits (1492), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 290/360 (80%), Positives = 321/360 (89%), Gaps = 11/360 (3%)

Query: 3   PQRRQGPSVPERKGQKRKLDEETVIGDEQQQMQQREISSSSAGTSSSDARQALLSEVSAQ 62
           P+RR+G S PERKGQKRKL+E          ++ REIS+ S     +D  QALLSEV+AQ
Sbjct: 5   PERREGRSFPERKGQKRKLEEGAA------AVEDREISAVS-----TDGGQALLSEVAAQ 53

Query: 63  VNVLNTTFSWLEADRAAAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEAD 122
           V+VLN+ FSW E+DRAAAKRAT VLAELAKNE++VN IV+GGAVPAL+ HLQAPP ++ D
Sbjct: 54  VSVLNSAFSWQESDRAAAKRATQVLAELAKNEDLVNVIVDGGAVPALMTHLQAPPYNDGD 113

Query: 123 RNLKPFEHEVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVI 182
              KP+EHEVEKGSAFALGLLA+KPE+Q+LIVD GAL HLVNLLKR+ D + SRAVNSVI
Sbjct: 114 LAEKPYEHEVEKGSAFALGLLAIKPEYQKLIVDKGALPHLVNLLKRNKDGSSSRAVNSVI 173

Query: 183 RRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENK 242
           RRAADAITNLAHENSSIKTRVR+EGGIPPLVELLEF+D+KVQRAAAGALRTLAFKND+NK
Sbjct: 174 RRAADAITNLAHENSSIKTRVRVEGGIPPLVELLEFSDSKVQRAAAGALRTLAFKNDDNK 233

Query: 243 NQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSS 302
           NQIVECNALPTLILML SED+AIHYEAVGVIGNLVHSSP+IKKEVL AGALQPVIGLLSS
Sbjct: 234 NQIVECNALPTLILMLGSEDAAIHYEAVGVIGNLVHSSPHIKKEVLTAGALQPVIGLLSS 293

Query: 303 CCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQ 362
           CC ESQREAALLLGQFA+TDSDCKVHIVQRGAVRPLIEMLQSPDVQL+EMSAFALGRLAQ
Sbjct: 294 CCPESQREAALLLGQFASTDSDCKVHIVQRGAVRPLIEMLQSPDVQLKEMSAFALGRLAQ 353

May act as a substrate-specific adapter of an E3 ubiquitin-protein ligase complex (CUL3-RBX1-BTB) which mediates the ubiquitination and subsequent proteasomal degradation of target proteins (By similarity). Acts as a positive regulator of ABA response via the modulation of the transcriptional activity of ABF2, a transcription factor which controls ABA-dependent gene expression via the G-box-type ABA-responsive elements. Negative regulator of seed germination and young seedling growth.
Arabidopsis thaliana (taxid: 3702)

>sp|B7U179|ABAP1_ARATH ARMADILLO BTB ARABIDOPSIS PROTEIN 1 OS=Arabidopsis thaliana GN=ABAP1 PE=1 SV=1

 Score =  369 bits (946), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 194/309 (62%), Positives = 238/309 (77%), Gaps = 2/309 (0%)

Query: 55  LLSEVSAQVNVLNTTFSWLEADRAAAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQ 114
           L+  +   V VLN++FS  + D  A K A   +A+LAK +E V  IVE GA+PALV++L+
Sbjct: 73  LVVAIRRHVEVLNSSFSDPDFDHEAVKEAAADIADLAKIDENVEIIVENGAIPALVRYLE 132

Query: 115 APPTSEADRNLKPFEHEVEKGSAFALGLLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSN 173
           +P     +   K  EH++EK  A ALGL+A ++P +QQLIVD GA+   V LLKR  +  
Sbjct: 133 SPLVVCGNVP-KSCEHKLEKDCALALGLIAAIQPGYQQLIVDAGAIVPTVKLLKRRGECG 191

Query: 174 CSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRT 233
                N+VIRRAAD ITN+AH+N  IKT +R+EGGI PLVELL F D KVQRAAAGALRT
Sbjct: 192 ECMFANAVIRRAADIITNIAHDNPRIKTNIRVEGGIAPLVELLNFPDVKVQRAAAGALRT 251

Query: 234 LAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGAL 293
           ++F+NDENK+QIVE NALPTL+LML+S+DS +H EA+G IGNLVHSSP+IKKEV+ AGAL
Sbjct: 252 VSFRNDENKSQIVELNALPTLVLMLQSQDSTVHGEAIGAIGNLVHSSPDIKKEVIRAGAL 311

Query: 294 QPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMS 353
           QPVIGLLSS C E+QREAALL+GQFAA DSDCKVHI QRGA+ PLI+ML+S D Q+ EMS
Sbjct: 312 QPVIGLLSSTCLETQREAALLIGQFAAPDSDCKVHIAQRGAITPLIKMLESSDEQVVEMS 371

Query: 354 AFALGRLAQ 362
           AFALGRLAQ
Sbjct: 372 AFALGRLAQ 380

May act as a substrate-specific adapter of an E3 ubiquitin-protein ligase complex (CUL3-RBX1-BTB) which mediates the ubiquitination and subsequent proteasomal degradation of target proteins (By similarity). In association with TCP24, exerts a negative role in cell proliferation in leaves, possibly by inhibiting mitotic DNA replication.

Arabidopsis thaliana (taxid: 3702)

>sp|P0CM60|VAC8_CRYNJ Vacuolar protein 8 OS=Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) GN=VAC8 PE=3 SV=1

 Score = 96.7 bits (239), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 80/249 (32%), Positives = 129/249 (51%), Gaps = 20/249 (8%)

Query: 125 LKPFEHEVEKGSAFALGLLAVKPEHQQLIVDNGALSHLV-NLLKRHMDSNCSRAVNSVIR 183
           L   + EV++ ++ ALG LAV  E++ L+V  G L  L+  +L  +++  C+        
Sbjct: 95  LSSHDPEVQRAASAALGNLAVNAENKLLVVSLGGLEPLIRQMLSPNVEVQCN-------- 146

Query: 184 RAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKN 243
            A   ITNLA  + + KT++   G + PL  L +  D +VQR A GAL  +   +DEN+ 
Sbjct: 147 -AVGCITNLATHDEN-KTQIAKSGALVPLTRLAKSKDMRVQRNATGALLNMTH-SDENRQ 203

Query: 244 QIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGAL-QPVIGLLSS 302
           Q+V   A+P L+ +L S D+ + Y     + N+   + N KK   +   L Q ++ L+ S
Sbjct: 204 QLVAAGAIPVLVSLLNSPDTDVQYYCTTALSNIAVDAANRKKLAQSEPKLVQSLVQLMDS 263

Query: 303 CCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQ 362
              + Q +AAL L    A+DS  ++ IV+ G ++PL+ +L S  + L       L   A 
Sbjct: 264 QSLKVQCQAALALRNL-ASDSKYQLEIVKFGGLKPLLRLLHSSYLPL------ILSAAAC 316

Query: 363 VITVSVLPA 371
           V  VS+ PA
Sbjct: 317 VRNVSIHPA 325

Functions in both vacuole inheritance and protein targeting from the cytoplasm to vacuole.

Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) (taxid: 214684)

>sp|P0CM61|VAC8_CRYNB Vacuolar protein 8 OS=Cryptococcus neoformans var. neoformans serotype D (strain B-3501A) GN=VAC8 PE=3 SV=1

 Score = 96.7 bits (239), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 80/249 (32%), Positives = 129/249 (51%), Gaps = 20/249 (8%)

Query: 125 LKPFEHEVEKGSAFALGLLAVKPEHQQLIVDNGALSHLV-NLLKRHMDSNCSRAVNSVIR 183
           L   + EV++ ++ ALG LAV  E++ L+V  G L  L+  +L  +++  C+        
Sbjct: 95  LSSHDPEVQRAASAALGNLAVNAENKLLVVSLGGLEPLIRQMLSPNVEVQCN-------- 146

Query: 184 RAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKN 243
            A   ITNLA  + + KT++   G + PL  L +  D +VQR A GAL  +   +DEN+ 
Sbjct: 147 -AVGCITNLATHDEN-KTQIAKSGALVPLTRLAKSKDMRVQRNATGALLNMTH-SDENRQ 203

Query: 244 QIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGAL-QPVIGLLSS 302
           Q+V   A+P L+ +L S D+ + Y     + N+   + N KK   +   L Q ++ L+ S
Sbjct: 204 QLVAAGAIPVLVSLLNSPDTDVQYYCTTALSNIAVDAANRKKLAQSEPKLVQSLVQLMDS 263

Query: 303 CCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQ 362
              + Q +AAL L    A+DS  ++ IV+ G ++PL+ +L S  + L       L   A 
Sbjct: 264 QSLKVQCQAALALRNL-ASDSKYQLEIVKFGGLKPLLRLLHSSYLPL------ILSAAAC 316

Query: 363 VITVSVLPA 371
           V  VS+ PA
Sbjct: 317 VRNVSIHPA 325

Functions in both vacuole inheritance and protein targeting from the cytoplasm to vacuole.

Cryptococcus neoformans var. neoformans serotype D (strain B-3501A) (taxid: 283643)

>sp|Q4WVW4|VAC8_ASPFU Vacuolar protein 8 OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=vac8 PE=3 SV=1

 Score = 92.8 bits (229), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 73/222 (32%), Positives = 118/222 (53%), Gaps = 14/222 (6%)

Query: 125 LKPFEHEVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRR 184
           L+  + EV++ ++ ALG LAV  E++ LIV   AL  L  L+++ M  N     N+V   
Sbjct: 115 LQSSDIEVQRAASAALGNLAVNAENKVLIV---ALGGLTPLIRQMMSPNVEVQCNAV--- 168

Query: 185 AADAITNLA-HENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKN 243
               ITNLA HE++  K ++   G + PL+ L +  D +VQR A GAL  +   +D+N+ 
Sbjct: 169 --GCITNLATHEDN--KAKIARSGALGPLIRLAKSKDMRVQRNATGALLNMT-HSDDNRQ 223

Query: 244 QIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGAL-QPVIGLLSS 302
           Q+V   A+P L+ +L S D  + Y     + N+   + N K+       L Q ++ L+ S
Sbjct: 224 QLVNAGAIPVLVQLLSSPDVDVQYYCTTALSNIAVDASNRKRLAQTESRLVQSLVHLMDS 283

Query: 303 CCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQS 344
              + Q +AAL L    A+D   ++ IV+   + PL+ +LQS
Sbjct: 284 STPKVQCQAALALRNL-ASDEKYQLEIVRAKGLPPLLRLLQS 324

Functions in both vacuole inheritance and protein targeting from the cytoplasm to vacuole.

Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) (taxid: 330879)

>sp|Q4I1B1|VAC8_GIBZE Vacuolar protein 8 OS=Gibberella zeae (strain PH-1 / ATCC MYA-4620 / FGSC 9075 / NRRL 31084) GN=VAC8 PE=3 SV=4

 Score = 92.8 bits (229), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 77/235 (32%), Positives = 122/235 (51%), Gaps = 22/235 (9%)

Query: 120 EADRN-LKPF-------EHEVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMD 171
           E DR+ L+P        + EV++ ++ ALG LAV  E++ LIV  G L+ L+   ++ M 
Sbjct: 83  EVDRDTLEPILFLLQSPDIEVQRAASAALGNLAVDTENKVLIVQLGGLTPLI---RQMMS 139

Query: 172 SNCSRAVNSVIRRAADAITNLA-HENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGA 230
            N     N+V       ITNLA HE +  K ++   G + PL  L +  D +VQR A GA
Sbjct: 140 PNVEVQCNAV-----GCITNLATHEEN--KAKIARSGALGPLTRLAKSRDMRVQRNATGA 192

Query: 231 LRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAA 290
           L  +   +DEN+ Q+V   A+P L+ +L S D  + Y     + N+   + N +K   + 
Sbjct: 193 LLNMT-HSDENRQQLVNAGAIPVLVQLLSSPDVDVQYYCTTALSNIAVDASNRRKLAQSE 251

Query: 291 GAL-QPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQS 344
             L Q ++ L+ S   + Q +AAL L    A+D   ++ IV+   + PL+ +LQS
Sbjct: 252 PKLVQSLVNLMDSTSPKVQCQAALALRNL-ASDEKYQLDIVRANGLHPLLRLLQS 305

Functions in both vacuole inheritance and protein targeting from the cytoplasm to vacuole.

Gibberella zeae (strain PH-1 / ATCC MYA-4620 / FGSC 9075 / NRRL 31084) (taxid: 229533)

>sp|Q2U5T5|VAC8_ASPOR Vacuolar protein 8 OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40) GN=vac8 PE=3 SV=1

 Score = 91.7 bits (226), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 72/222 (32%), Positives = 118/222 (53%), Gaps = 14/222 (6%)

Query: 125 LKPFEHEVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRR 184
           L+  + EV++ ++ ALG LAV  +++ LIV   AL  L  L+++ M  N     N+V   
Sbjct: 115 LQSSDIEVQRAASAALGNLAVNADNKVLIV---ALGGLAPLIRQMMSPNVEVQCNAV--- 168

Query: 185 AADAITNLA-HENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKN 243
               ITNLA HE++  K ++   G + PL+ L +  D +VQR A GAL  +   +D+N+ 
Sbjct: 169 --GCITNLATHEDN--KAKIARSGALGPLIRLAKSKDMRVQRNATGALLNMT-HSDDNRQ 223

Query: 244 QIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGAL-QPVIGLLSS 302
           Q+V   A+P L+ +L S D  + Y     + N+   + N K+       L Q ++ L+ S
Sbjct: 224 QLVNAGAIPVLVQLLSSSDVDVQYYCTTALSNIAVDASNRKRLAQTESRLVQSLVHLMDS 283

Query: 303 CCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQS 344
              + Q +AAL L    A+D   ++ IV+   + PL+ +LQS
Sbjct: 284 STPKVQCQAALALRNL-ASDEKYQLEIVRAKGLPPLLRLLQS 324

Functions in both vacuole inheritance and protein targeting from the cytoplasm to vacuole.

Aspergillus oryzae (strain ATCC 42149 / RIB 40) (taxid: 510516)

>sp|Q6BTZ4|VAC8_DEBHA Vacuolar protein 8 OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) GN=VAC8 PE=3 SV=4

 Score = 87.0 bits (214), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 68/219 (31%), Positives = 114/219 (52%), Gaps = 12/219 (5%)

Query: 125 LKPFEHEVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRR 184
           L+  + EV++ +  ALG LAV  E++ LIV+ G L  L+   ++ M +N     N+V   
Sbjct: 96  LQSADSEVQRAACGALGNLAVNNENKILIVEMGGLEPLI---RQMMSTNIEVQCNAV--- 149

Query: 185 AADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQ 244
               ITNLA ++ + KT++   G + PL +L +  D +VQR A GAL  +     EN+ +
Sbjct: 150 --GCITNLATQDDN-KTKIAKSGALIPLAKLAKSKDIRVQRNATGALLNMTHSG-ENRQE 205

Query: 245 IVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKK-EVLAAGALQPVIGLLSSC 303
           +V   A+P L+ +L +ED+ + Y     + N+     N KK        +  ++ L+ S 
Sbjct: 206 LVNAGAVPVLVSLLSNEDADVQYYCTTALSNIAVDEMNRKKLSTTEPKLVSQLVNLMDSP 265

Query: 304 CSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEML 342
               Q +A L L    A+DS  +V IV+ G +  L+++L
Sbjct: 266 SPRVQCQATLALRNL-ASDSGYQVEIVRAGGLPHLVQLL 303

Functions in both vacuole inheritance and protein targeting from the cytoplasm to vacuole.

Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) (taxid: 284592)

>sp|Q59MN0|VAC8_CANAL Vacuolar protein 8 OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=VAC8 PE=3 SV=3

 Score = 84.7 bits (208), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 70/221 (31%), Positives = 117/221 (52%), Gaps = 16/221 (7%)

Query: 125 LKPFEHEVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRR 184
           L+  + EV++ +  ALG LAV  E++ LIV+ G L  L+   ++ M +N     N+V   
Sbjct: 96  LQSADSEVQRAACGALGNLAVNTENKILIVEMGGLEPLI---RQMMSTNIEVQCNAV--- 149

Query: 185 AADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQ 244
               ITNLA ++ + K+++   G + PL +L +  D +VQR A GAL  +     EN+ +
Sbjct: 150 --GCITNLATQDDN-KSKIAKSGALIPLTKLAKSKDIRVQRNATGALLNMTHSG-ENRQE 205

Query: 245 IVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPV---IGLLS 301
           +V   A+P L+ +L +ED+ + Y     + N+     N KK  LA+   + V   + L+ 
Sbjct: 206 LVNAGAVPVLVSLLSNEDADVQYYCTTALSNIAVDEVNRKK--LASTEPKLVGQLVHLMD 263

Query: 302 SCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEML 342
           S     Q +A L L    A+DS  +V IV+ G +  L+++L
Sbjct: 264 SPSPRVQCQATLALRNL-ASDSGYQVEIVRAGGLPHLVQLL 303

Functions in both vacuole inheritance and protein targeting from the cytoplasm to vacuole. Vacuole inheritance has a role in the regulation of hyphal cell division.

Candida albicans (strain SC5314 / ATCC MYA-2876) (taxid: 237561)

>sp|Q6C5Y8|VAC8_YARLI Vacuolar protein 8 OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=VAC8 PE=3 SV=1

 Score = 84.7 bits (208), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 69/222 (31%), Positives = 116/222 (52%), Gaps = 14/222 (6%)

Query: 125 LKPFEHEVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRR 184
           L+  + ++++ ++ ALG LAV  E++ LIV+ G    L+   ++ M  N     N+V   
Sbjct: 117 LQNTDPDIQRAASAALGNLAVNNENKVLIVEMGGFEPLI---RQMMSPNVEVQCNAV--- 170

Query: 185 AADAITNLA-HENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKN 243
               ITNLA HE +  K+++   G + PL +L +  D +VQR A GAL  +   +D+N+ 
Sbjct: 171 --GCITNLATHEAN--KSKIARSGALLPLTKLAKSKDMRVQRNATGALLNMTH-SDQNRQ 225

Query: 244 QIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGAL-QPVIGLLSS 302
           ++V   A+P L+ +L S D  + Y +   + N+     N KK   +   L + +I L+ S
Sbjct: 226 ELVNAGAIPILVSLLSSRDPDVQYYSTTALSNIAVDESNRKKLSSSEPRLVEHLIKLMDS 285

Query: 303 CCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQS 344
                Q +AAL L    A+DSD ++ IV+   +  L  + QS
Sbjct: 286 GSPRVQCQAALALRNL-ASDSDYQLEIVKANGLPHLFNLFQS 326

Functions in both vacuole inheritance and protein targeting from the cytoplasm to vacuole.

Yarrowia lipolytica (strain CLIB 122 / E 150) (taxid: 284591)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	399
225432592	705	PREDICTED: ARM REPEAT PROTEIN INTERACTIN	0.877	0.496	0.845	1e-168
225432594	711	PREDICTED: ARM REPEAT PROTEIN INTERACTIN	0.877	0.492	0.845	1e-167
449432712	703	PREDICTED: ARM REPEAT PROTEIN INTERACTIN	0.872	0.495	0.839	1e-167
147790059	726	hypothetical protein VITISV_012185 [Viti	0.877	0.482	0.845	1e-167
255552325	719	protein binding protein, putative [Ricin	0.902	0.500	0.844	1e-166
224102035	720	predicted protein [Populus trichocarpa]	0.889	0.493	0.818	1e-163
30687245	710	ARM repeat protein interacting with ABF2	0.874	0.491	0.805	1e-163
297812115	710	armadillo/beta-catenin repeat family pro	0.874	0.491	0.8	1e-162
356536027	707	PREDICTED: ARM REPEAT PROTEIN INTERACTIN	0.882	0.497	0.798	1e-162
15239713	636	ARM repeat protein interacting with ABF2	0.874	0.548	0.803	1e-162

>gi|225432592|ref|XP_002281388.1| PREDICTED: ARM REPEAT PROTEIN INTERACTING WITH ABF2 isoform 1 [Vitis vinifera] gi|297737016|emb|CBI26217.3| unnamed protein product [Vitis vinifera]

 Score =  596 bits (1537), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 306/362 (84%), Positives = 326/362 (90%), Gaps = 12/362 (3%)

Query: 1   MDPQRRQGPSVPERKGQKRKLDEETVIGDEQQQMQQREISSSSAGTSSSDARQALLSEVS 60
           M+ Q+RQ    PERKGQKRKL        E++  ++REIS + +G    +A QAL  EVS
Sbjct: 1   MELQKRQDQGQPERKGQKRKL--------EEEFEEEREISVAPSG----EAHQALSCEVS 48

Query: 61  AQVNVLNTTFSWLEADRAAAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSE 120
           AQVN+LNTTFSW EADRAAAKRATHVLAELAKNEEVVN IV+GGAVPALVKHLQAPP+S+
Sbjct: 49  AQVNILNTTFSWKEADRAAAKRATHVLAELAKNEEVVNVIVDGGAVPALVKHLQAPPSSD 108

Query: 121 ADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNS 180
            D + +PFEHEVEKGSAFALGLLAVKPEHQQLIVDNGALSHLV+LLKRH D + SRAVNS
Sbjct: 109 GDHDQRPFEHEVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVDLLKRHRDGSNSRAVNS 168

Query: 181 VIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDE 240
           VIRRAADA+TNLAHENSSIKTRVRMEGGIPPLV+LLEF DTKVQRAAAGALRTLAFKNDE
Sbjct: 169 VIRRAADAVTNLAHENSSIKTRVRMEGGIPPLVQLLEFADTKVQRAAAGALRTLAFKNDE 228

Query: 241 NKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLL 300
           NKNQIVECNALPTLILMLRSED+AIHYEAVGVIGNLVHSSPNIKKEVL AGALQPVIGLL
Sbjct: 229 NKNQIVECNALPTLILMLRSEDAAIHYEAVGVIGNLVHSSPNIKKEVLLAGALQPVIGLL 288

Query: 301 SSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRL 360
           SSCCSESQREAALLLGQFAATDSDCKVHI QRGAVRPLIEMLQS DVQLREMSAFALGRL
Sbjct: 289 SSCCSESQREAALLLGQFAATDSDCKVHIAQRGAVRPLIEMLQSADVQLREMSAFALGRL 348

Query: 361 AQ 362
           AQ
Sbjct: 349 AQ 350

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225432594|ref|XP_002281401.1| PREDICTED: ARM REPEAT PROTEIN INTERACTING WITH ABF2 isoform 2 [Vitis vinifera]

 Score =  595 bits (1535), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 306/362 (84%), Positives = 326/362 (90%), Gaps = 12/362 (3%)

Query: 1   MDPQRRQGPSVPERKGQKRKLDEETVIGDEQQQMQQREISSSSAGTSSSDARQALLSEVS 60
           M+ Q+RQ    PERKGQKRKL        E++  ++REIS + +G    +A QAL  EVS
Sbjct: 1   MELQKRQDQGQPERKGQKRKL--------EEEFEEEREISVAPSG----EAHQALSCEVS 48

Query: 61  AQVNVLNTTFSWLEADRAAAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSE 120
           AQVN+LNTTFSW EADRAAAKRATHVLAELAKNEEVVN IV+GGAVPALVKHLQAPP+S+
Sbjct: 49  AQVNILNTTFSWKEADRAAAKRATHVLAELAKNEEVVNVIVDGGAVPALVKHLQAPPSSD 108

Query: 121 ADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNS 180
            D + +PFEHEVEKGSAFALGLLAVKPEHQQLIVDNGALSHLV+LLKRH D + SRAVNS
Sbjct: 109 GDHDQRPFEHEVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVDLLKRHRDGSNSRAVNS 168

Query: 181 VIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDE 240
           VIRRAADA+TNLAHENSSIKTRVRMEGGIPPLV+LLEF DTKVQRAAAGALRTLAFKNDE
Sbjct: 169 VIRRAADAVTNLAHENSSIKTRVRMEGGIPPLVQLLEFADTKVQRAAAGALRTLAFKNDE 228

Query: 241 NKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLL 300
           NKNQIVECNALPTLILMLRSED+AIHYEAVGVIGNLVHSSPNIKKEVL AGALQPVIGLL
Sbjct: 229 NKNQIVECNALPTLILMLRSEDAAIHYEAVGVIGNLVHSSPNIKKEVLLAGALQPVIGLL 288

Query: 301 SSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRL 360
           SSCCSESQREAALLLGQFAATDSDCKVHI QRGAVRPLIEMLQS DVQLREMSAFALGRL
Sbjct: 289 SSCCSESQREAALLLGQFAATDSDCKVHIAQRGAVRPLIEMLQSADVQLREMSAFALGRL 348

Query: 361 AQ 362
           AQ
Sbjct: 349 AQ 350

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449432712|ref|XP_004134143.1| PREDICTED: ARM REPEAT PROTEIN INTERACTING WITH ABF2-like [Cucumis sativus]

 Score =  595 bits (1535), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 304/362 (83%), Positives = 320/362 (88%), Gaps = 14/362 (3%)

Query: 1   MDPQRRQGPSVPERKGQKRKLDEETVIGDEQQQMQQREISSSSAGTSSSDARQALLSEVS 60
           M+ Q+R   ++PERKG KRKL+EE                       + DA+QA+L+EVS
Sbjct: 1   MELQKRLDQNLPERKGHKRKLEEEFE-------------EEREISVPTGDAKQAILTEVS 47

Query: 61  AQVNVLNTTFSWLEADRAAAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSE 120
            QV +LN+TFSW EADRAAAKRATHVLAELAKNEEVVN IVEGGAVPALVKHLQAPPT E
Sbjct: 48  DQVEILNSTFSWKEADRAAAKRATHVLAELAKNEEVVNVIVEGGAVPALVKHLQAPPTIE 107

Query: 121 ADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNS 180
            DR+LKPFEHEVEKGSAFALGLLAVKPEHQQLIVD GALSHLV LLKRH D + SRAVNS
Sbjct: 108 GDRSLKPFEHEVEKGSAFALGLLAVKPEHQQLIVDIGALSHLVELLKRHKDGS-SRAVNS 166

Query: 181 VIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDE 240
           VIRRAADAITNLAHENS IKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDE
Sbjct: 167 VIRRAADAITNLAHENSFIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDE 226

Query: 241 NKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLL 300
           NKNQIVECNALPTLILMLRSED+AIHYEAVGVIGNLVHSSPNIK+EVL AGALQPVIGLL
Sbjct: 227 NKNQIVECNALPTLILMLRSEDAAIHYEAVGVIGNLVHSSPNIKREVLLAGALQPVIGLL 286

Query: 301 SSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRL 360
           SSCCSESQREAALLLGQFAATDSDCK+HIVQRGAVRPLIEMLQSPDVQLREMSAFALGRL
Sbjct: 287 SSCCSESQREAALLLGQFAATDSDCKIHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRL 346

Query: 361 AQ 362
           AQ
Sbjct: 347 AQ 348

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147790059|emb|CAN75981.1| hypothetical protein VITISV_012185 [Vitis vinifera]

 Score =  595 bits (1534), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 306/362 (84%), Positives = 326/362 (90%), Gaps = 12/362 (3%)

Query: 1   MDPQRRQGPSVPERKGQKRKLDEETVIGDEQQQMQQREISSSSAGTSSSDARQALLSEVS 60
           M+ Q+RQ    PERKGQKRKL        E++  ++REIS + +G    +A QAL  EVS
Sbjct: 1   MELQKRQDQGQPERKGQKRKL--------EEEFEEEREISVAPSG----EAHQALSCEVS 48

Query: 61  AQVNVLNTTFSWLEADRAAAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSE 120
           AQVN+LNTTFSW EADRAAAKRATHVLAELAKNEEVVN IV+GGAVPALVKHLQAPP+S+
Sbjct: 49  AQVNILNTTFSWKEADRAAAKRATHVLAELAKNEEVVNVIVDGGAVPALVKHLQAPPSSD 108

Query: 121 ADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNS 180
            D + +PFEHEVEKGSAFALGLLAVKPEHQQLIVDNGALSHLV+LLKRH D + SRAVNS
Sbjct: 109 GDHDQRPFEHEVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVDLLKRHRDGSNSRAVNS 168

Query: 181 VIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDE 240
           VIRRAADA+TNLAHENSSIKTRVRMEGGIPPLV+LLEF DTKVQRAAAGALRTLAFKNDE
Sbjct: 169 VIRRAADAVTNLAHENSSIKTRVRMEGGIPPLVQLLEFADTKVQRAAAGALRTLAFKNDE 228

Query: 241 NKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLL 300
           NKNQIVECNALPTLILMLRSED+AIHYEAVGVIGNLVHSSPNIKKEVL AGALQPVIGLL
Sbjct: 229 NKNQIVECNALPTLILMLRSEDAAIHYEAVGVIGNLVHSSPNIKKEVLLAGALQPVIGLL 288

Query: 301 SSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRL 360
           SSCCSESQREAALLLGQFAATDSDCKVHI QRGAVRPLIEMLQS DVQLREMSAFALGRL
Sbjct: 289 SSCCSESQREAALLLGQFAATDSDCKVHIAQRGAVRPLIEMLQSADVQLREMSAFALGRL 348

Query: 361 AQ 362
           AQ
Sbjct: 349 AQ 350

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255552325|ref|XP_002517207.1| protein binding protein, putative [Ricinus communis] gi|223543842|gb|EEF45370.1| protein binding protein, putative [Ricinus communis]

 Score =  589 bits (1518), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 309/366 (84%), Positives = 328/366 (89%), Gaps = 6/366 (1%)

Query: 1   MDPQRRQGPSV--PERKGQKRKLDEETVIGDEQQQMQQREISSSSAGTSSSDARQALLSE 58
           M+PQR Q      PERKGQKRKL+EE     EQQ++     ++++A     DARQALL E
Sbjct: 1   MEPQRSQSKDQGRPERKGQKRKLEEEIED--EQQEISASATAAAAAAVPFGDARQALLYE 58

Query: 59  VSAQVNVLNTTFSWLEADRAAAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPT 118
           V++QVN+LN+TFSW EADRAAAKRA HVLAE AKNEE+VN IVEGGAVPALVKHLQAPP+
Sbjct: 59  VASQVNILNSTFSWNEADRAAAKRAIHVLAEFAKNEELVNVIVEGGAVPALVKHLQAPPS 118

Query: 119 S--EADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSR 176
           S  E DR+ KPFEHEVEKGSAFALGLLAVKPEHQQLIVD GALSHLV LLKRH D + SR
Sbjct: 119 SSSEVDRSTKPFEHEVEKGSAFALGLLAVKPEHQQLIVDIGALSHLVELLKRHKDGSVSR 178

Query: 177 AVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAF 236
           AVNSVIRRAADAITNLAHENSSIKTRVR+EGGIPPLVELLEF DTKVQRAAAGALRTLAF
Sbjct: 179 AVNSVIRRAADAITNLAHENSSIKTRVRVEGGIPPLVELLEFVDTKVQRAAAGALRTLAF 238

Query: 237 KNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPV 296
           KNDENK QIVECNALPTLILMLRSED+AIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPV
Sbjct: 239 KNDENKKQIVECNALPTLILMLRSEDAAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPV 298

Query: 297 IGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFA 356
           IGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAV+PLIEMLQSPDVQLREMSAFA
Sbjct: 299 IGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVQPLIEMLQSPDVQLREMSAFA 358

Query: 357 LGRLAQ 362
           LGRLAQ
Sbjct: 359 LGRLAQ 364

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224102035|ref|XP_002312519.1| predicted protein [Populus trichocarpa] gi|222852339|gb|EEE89886.1| predicted protein [Populus trichocarpa]

 Score =  580 bits (1495), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 302/369 (81%), Positives = 326/369 (88%), Gaps = 14/369 (3%)

Query: 1   MDPQRRQGPSVPERKGQKRKLDEETVIGDEQQQMQQREISSSSAGTSS--SDARQALLSE 58
           M+ ++ Q   VPERKGQKRKL+EE   G       +REIS++ A  ++   +AR+ +L+E
Sbjct: 1   MELKKHQDQRVPERKGQKRKLEEEIEEG-------KREISAAEAAAAAPYGEARRVILNE 53

Query: 59  VSAQVNVLNTTFSWLEADRAAAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPT 118
           V  QVN+LN+TFSW E  R AAKRATH+LAELAKNEEVVN IVEGGAVPALVKHL+APP+
Sbjct: 54  VYTQVNILNSTFSWHETHRGAAKRATHILAELAKNEEVVNVIVEGGAVPALVKHLEAPPS 113

Query: 119 SEADRN-LKPFEHEVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKR----HMDSN 173
           SE D N  KPFEHEVEK SAFALGLLAVKPEHQQ+IVD GALSHLV+LLKR    H D +
Sbjct: 114 SEIDHNNSKPFEHEVEKESAFALGLLAVKPEHQQIIVDAGALSHLVSLLKRQRDVHRDGS 173

Query: 174 CSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRT 233
            SRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRT
Sbjct: 174 NSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRT 233

Query: 234 LAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGAL 293
           LAFKNDENKNQIVEC ALPTLILMLRS+D+AIHYEAVGVIGNLVHSSPNIK+EVLAAGAL
Sbjct: 234 LAFKNDENKNQIVECYALPTLILMLRSDDAAIHYEAVGVIGNLVHSSPNIKREVLAAGAL 293

Query: 294 QPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMS 353
           QPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMS
Sbjct: 294 QPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMS 353

Query: 354 AFALGRLAQ 362
           AFALGRLAQ
Sbjct: 354 AFALGRLAQ 362

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30687245|ref|NP_850852.1| ARM repeat protein interacting with ABF2 [Arabidopsis thaliana] gi|325529999|sp|B9DHT4.2|ARIA_ARATH RecName: Full=ARM REPEAT PROTEIN INTERACTING WITH ABF2; Short=ARIA gi|332005303|gb|AED92686.1| ARM repeat protein interacting with ABF2 [Arabidopsis thaliana]

 Score =  579 bits (1492), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 290/360 (80%), Positives = 321/360 (89%), Gaps = 11/360 (3%)

Query: 3   PQRRQGPSVPERKGQKRKLDEETVIGDEQQQMQQREISSSSAGTSSSDARQALLSEVSAQ 62
           P+RR+G S PERKGQKRKL+E          ++ REIS+ S     +D  QALLSEV+AQ
Sbjct: 5   PERREGRSFPERKGQKRKLEEGAA------AVEDREISAVS-----TDGGQALLSEVAAQ 53

Query: 63  VNVLNTTFSWLEADRAAAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEAD 122
           V+VLN+ FSW E+DRAAAKRAT VLAELAKNE++VN IV+GGAVPAL+ HLQAPP ++ D
Sbjct: 54  VSVLNSAFSWQESDRAAAKRATQVLAELAKNEDLVNVIVDGGAVPALMTHLQAPPYNDGD 113

Query: 123 RNLKPFEHEVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVI 182
              KP+EHEVEKGSAFALGLLA+KPE+Q+LIVD GAL HLVNLLKR+ D + SRAVNSVI
Sbjct: 114 LAEKPYEHEVEKGSAFALGLLAIKPEYQKLIVDKGALPHLVNLLKRNKDGSSSRAVNSVI 173

Query: 183 RRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENK 242
           RRAADAITNLAHENSSIKTRVR+EGGIPPLVELLEF+D+KVQRAAAGALRTLAFKND+NK
Sbjct: 174 RRAADAITNLAHENSSIKTRVRVEGGIPPLVELLEFSDSKVQRAAAGALRTLAFKNDDNK 233

Query: 243 NQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSS 302
           NQIVECNALPTLILML SED+AIHYEAVGVIGNLVHSSP+IKKEVL AGALQPVIGLLSS
Sbjct: 234 NQIVECNALPTLILMLGSEDAAIHYEAVGVIGNLVHSSPHIKKEVLTAGALQPVIGLLSS 293

Query: 303 CCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQ 362
           CC ESQREAALLLGQFA+TDSDCKVHIVQRGAVRPLIEMLQSPDVQL+EMSAFALGRLAQ
Sbjct: 294 CCPESQREAALLLGQFASTDSDCKVHIVQRGAVRPLIEMLQSPDVQLKEMSAFALGRLAQ 353

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297812115|ref|XP_002873941.1| armadillo/beta-catenin repeat family protein [Arabidopsis lyrata subsp. lyrata] gi|297319778|gb|EFH50200.1| armadillo/beta-catenin repeat family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  578 bits (1490), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 288/360 (80%), Positives = 322/360 (89%), Gaps = 11/360 (3%)

Query: 3   PQRRQGPSVPERKGQKRKLDEETVIGDEQQQMQQREISSSSAGTSSSDARQALLSEVSAQ 62
           P+RR+G S PERKGQKRKL+E          ++ R+IS+ +     +D  QALL+EV+AQ
Sbjct: 5   PERREGRSFPERKGQKRKLEEGAA------AVEDRQISAVT-----TDGGQALLTEVAAQ 53

Query: 63  VNVLNTTFSWLEADRAAAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEAD 122
           V+VLN+ FSW E+DRAAAKRAT VLAELAKNE++VN IV+GGAVPAL+ HLQAPP ++ D
Sbjct: 54  VSVLNSAFSWQESDRAAAKRATQVLAELAKNEDLVNVIVDGGAVPALMTHLQAPPYNDGD 113

Query: 123 RNLKPFEHEVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVI 182
              KP+EHEVEKGSAFALGLLA+KPE+Q+LIVD GAL HLVNLLKR+ D + SRAVNSVI
Sbjct: 114 LAEKPYEHEVEKGSAFALGLLAIKPEYQKLIVDKGALPHLVNLLKRNKDGSSSRAVNSVI 173

Query: 183 RRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENK 242
           RRAADAITNLAHENSSIKTRVR+EGGIPPLVELLEF+D+KVQRAAAGALRTLAFKND+NK
Sbjct: 174 RRAADAITNLAHENSSIKTRVRVEGGIPPLVELLEFSDSKVQRAAAGALRTLAFKNDDNK 233

Query: 243 NQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSS 302
           NQIVECNALPTLILML SED+AIHYEAVGVIGNLVHSSP+IKKEVLAAGALQPVIGLLSS
Sbjct: 234 NQIVECNALPTLILMLGSEDAAIHYEAVGVIGNLVHSSPHIKKEVLAAGALQPVIGLLSS 293

Query: 303 CCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQ 362
           CC ESQREAALLLGQFA+TDSDCKVHIVQRGAVRPLIEMLQSPDVQL+EMSAFALGRLAQ
Sbjct: 294 CCPESQREAALLLGQFASTDSDCKVHIVQRGAVRPLIEMLQSPDVQLKEMSAFALGRLAQ 353

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356536027|ref|XP_003536542.1| PREDICTED: ARM REPEAT PROTEIN INTERACTING WITH ABF2-like [Glycine max]

 Score =  577 bits (1487), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 289/362 (79%), Positives = 319/362 (88%), Gaps = 10/362 (2%)

Query: 1   MDPQRRQGPSVPERKGQKRKLDEETVIGDEQQQMQQREISSSSAGTSSSDARQALLSEVS 60
           M+ QRRQ  S+ +RKGQKRKLDEE       Q  + R+IS +     ++D R ALLS+V+
Sbjct: 1   MELQRRQDQSLSQRKGQKRKLDEE-------QHHEDRQISPAP---PTADERAALLSDVA 50

Query: 61  AQVNVLNTTFSWLEADRAAAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSE 120
            QV++L +TF+W EADR+AAKRATH LA+LAKNE+VVN IVEGGA+PALVKHLQAPP S+
Sbjct: 51  EQVSILESTFTWNEADRSAAKRATHALADLAKNEDVVNLIVEGGAIPALVKHLQAPPLSD 110

Query: 121 ADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNS 180
             +N  PFEHEVEKGSAF LGLLAVKPEHQQ IVD+GAL+HLV+LLKRH +   SRA+NS
Sbjct: 111 RVQNPLPFEHEVEKGSAFTLGLLAVKPEHQQFIVDSGALTHLVDLLKRHRNGLTSRAINS 170

Query: 181 VIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDE 240
           +IRRAADAITNLAHENSSIKTRVRMEGGIPPLV LL+F D KVQRAAAGALRTLAFKNDE
Sbjct: 171 LIRRAADAITNLAHENSSIKTRVRMEGGIPPLVHLLDFADAKVQRAAAGALRTLAFKNDE 230

Query: 241 NKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLL 300
           NKNQIVECNALPTLILMLRSED+ +HYEAVGVIGNLVHSSPNIKKEVL AGALQPVIGLL
Sbjct: 231 NKNQIVECNALPTLILMLRSEDAGVHYEAVGVIGNLVHSSPNIKKEVLLAGALQPVIGLL 290

Query: 301 SSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRL 360
           SSCCSESQREAALLLGQFAATDSDCKVHIVQRGAV+PLIEMLQSPDVQLREMSAFALGRL
Sbjct: 291 SSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVQPLIEMLQSPDVQLREMSAFALGRL 350

Query: 361 AQ 362
           AQ
Sbjct: 351 AQ 352

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15239713|ref|NP_197434.1| ARM repeat protein interacting with ABF2 [Arabidopsis thaliana] gi|332005304|gb|AED92687.1| ARM repeat protein interacting with ABF2 [Arabidopsis thaliana]

 Score =  576 bits (1484), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 290/361 (80%), Positives = 321/361 (88%), Gaps = 12/361 (3%)

Query: 3   PQRRQGPSVPERKGQKRKLDEETVIGDEQQQMQQREISSSSAGTSSSDARQALLSEVSAQ 62
           P+RR+G S PERKGQKRKL+E          ++ REIS+ S     +D  QALLSEV+AQ
Sbjct: 5   PERREGRSFPERKGQKRKLEEGAA------AVEDREISAVS-----TDGGQALLSEVAAQ 53

Query: 63  VNVLNTTFSWLEADRAAAKRATHVLAELAKN-EEVVNWIVEGGAVPALVKHLQAPPTSEA 121
           V+VLN+ FSW E+DRAAAKRAT VLAELAKN E++VN IV+GGAVPAL+ HLQAPP ++ 
Sbjct: 54  VSVLNSAFSWQESDRAAAKRATQVLAELAKNAEDLVNVIVDGGAVPALMTHLQAPPYNDG 113

Query: 122 DRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSV 181
           D   KP+EHEVEKGSAFALGLLA+KPE+Q+LIVD GAL HLVNLLKR+ D + SRAVNSV
Sbjct: 114 DLAEKPYEHEVEKGSAFALGLLAIKPEYQKLIVDKGALPHLVNLLKRNKDGSSSRAVNSV 173

Query: 182 IRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDEN 241
           IRRAADAITNLAHENSSIKTRVR+EGGIPPLVELLEF+D+KVQRAAAGALRTLAFKND+N
Sbjct: 174 IRRAADAITNLAHENSSIKTRVRVEGGIPPLVELLEFSDSKVQRAAAGALRTLAFKNDDN 233

Query: 242 KNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLS 301
           KNQIVECNALPTLILML SED+AIHYEAVGVIGNLVHSSP+IKKEVL AGALQPVIGLLS
Sbjct: 234 KNQIVECNALPTLILMLGSEDAAIHYEAVGVIGNLVHSSPHIKKEVLTAGALQPVIGLLS 293

Query: 302 SCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLA 361
           SCC ESQREAALLLGQFA+TDSDCKVHIVQRGAVRPLIEMLQSPDVQL+EMSAFALGRLA
Sbjct: 294 SCCPESQREAALLLGQFASTDSDCKVHIVQRGAVRPLIEMLQSPDVQLKEMSAFALGRLA 353

Query: 362 Q 362
           Q
Sbjct: 354 Q 354

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	399
TAIR|locus:2150295	710	ARIA "ARM repeat protein inter	0.874	0.491	0.8	1.2e-143
TAIR|locus:2179842	737	ABAP1 "ARMADILLO BTB protein 1	0.769	0.416	0.627	1.9e-92
ASPGD|ASPL0000008980	579	AN12408 [Emericella nidulans (	0.588	0.405	0.32	3.8e-20
CGD|CAL0001835	585	VAC8 [Candida albicans (taxid:	0.518	0.353	0.310	3e-17
UNIPROTKB|Q59MN0	585	VAC8 "Vacuolar protein 8" [Can	0.518	0.353	0.310	3e-17
SGD|S000000739	578	VAC8 "Phosphorylated and palmi	0.536	0.370	0.292	2.5e-16
TAIR|locus:2055033	930	ARABIDILLO-1 "AT2G44900" [Arab	0.686	0.294	0.286	2.2e-15
POMBASE|SPBC354.14c	550	vac8 "vacuolar protein Vac8 (p	0.506	0.367	0.291	3.2e-15
TAIR|locus:2103351	928	ARABIDILLO-2 "AT3G60350" [Arab	0.684	0.294	0.278	2.4e-13
ASPGD|ASPL0000045550	553	kapA [Emericella nidulans (tax	0.461	0.332	0.269	4.7e-13

TAIR|locus:2150295 ARIA "ARM repeat protein interacting with ABF2" [Arabidopsis thaliana (taxid:3702)]

 Score = 1404 (499.3 bits), Expect = 1.2e-143, P = 1.2e-143
 Identities = 288/360 (80%), Positives = 317/360 (88%)

Query:     3 PQRRQGPSVPERKGQKRKLDEETVIGDEQQQMQQREIXXXXXXXXXXDARQALLSEVSAQ 62
             P+RR+G S PERKGQKRKL+E          ++ REI          D  QALLSEV+AQ
Sbjct:     5 PERREGRSFPERKGQKRKLEEGAAA------VEDREISAVST-----DGGQALLSEVAAQ 53

Query:    63 VNVLNTTFSWLEADRAAAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEAD 122
             V+VLN+ FSW E+DRAAAKRAT VLAELAKNE++VN IV+GGAVPAL+ HLQAPP ++ D
Sbjct:    54 VSVLNSAFSWQESDRAAAKRATQVLAELAKNEDLVNVIVDGGAVPALMTHLQAPPYNDGD 113

Query:   123 RNLKPFEHEVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVI 182
                KP+EHEVEKGSAFALGLLA+KPE+Q+LIVD GAL HLVNLLKR+ D + SRAVNSVI
Sbjct:   114 LAEKPYEHEVEKGSAFALGLLAIKPEYQKLIVDKGALPHLVNLLKRNKDGSSSRAVNSVI 173

Query:   183 RRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENK 242
             RRAADAITNLAHENSSIKTRVR+EGGIPPLVELLEF+D+KVQRAAAGALRTLAFKND+NK
Sbjct:   174 RRAADAITNLAHENSSIKTRVRVEGGIPPLVELLEFSDSKVQRAAAGALRTLAFKNDDNK 233

Query:   243 NQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSS 302
             NQIVECNALPTLILML SED+AIHYEAVGVIGNLVHSSP+IKKEVL AGALQPVIGLLSS
Sbjct:   234 NQIVECNALPTLILMLGSEDAAIHYEAVGVIGNLVHSSPHIKKEVLTAGALQPVIGLLSS 293

Query:   303 CCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQ 362
             CC ESQREAALLLGQFA+TDSDCKVHIVQRGAVRPLIEMLQSPDVQL+EMSAFALGRLAQ
Sbjct:   294 CCPESQREAALLLGQFASTDSDCKVHIVQRGAVRPLIEMLQSPDVQLKEMSAFALGRLAQ 353

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0005737 "cytoplasm" evidence=ISM

GO:0005515 "protein binding" evidence=IPI

GO:0005886 "plasma membrane" evidence=IDA

GO:0009651 "response to salt stress" evidence=IEP

GO:0009737 "response to abscisic acid stimulus" evidence=IEP;IMP

GO:0010187 "negative regulation of seed germination" evidence=IMP

GO:0000956 "nuclear-transcribed mRNA catabolic process" evidence=RCA

TAIR|locus:2179842 ABAP1 "ARMADILLO BTB protein 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 921 (329.3 bits), Expect = 1.9e-92, P = 1.9e-92
 Identities = 194/309 (62%), Positives = 237/309 (76%)

Query:    55 LLSEVSAQVNVLNTTFSWLEADRAAAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQ 114
             L+  +   V VLN++FS  + D  A K A   +A+LAK +E V  IVE GA+PALV++L+
Sbjct:    73 LVVAIRRHVEVLNSSFSDPDFDHEAVKEAAADIADLAKIDENVEIIVENGAIPALVRYLE 132

Query:   115 APPTSEADRNLKPFEHEVEKGSAFALGLLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSN 173
             +P         K  EH++EK  A ALGL+A ++P +QQLIVD GA+   V LLKR  +  
Sbjct:   133 SPLVV-CGNVPKSCEHKLEKDCALALGLIAAIQPGYQQLIVDAGAIVPTVKLLKRRGECG 191

Query:   174 CSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRT 233
                  N+VIRRAAD ITN+AH+N  IKT +R+EGGI PLVELL F D KVQRAAAGALRT
Sbjct:   192 ECMFANAVIRRAADIITNIAHDNPRIKTNIRVEGGIAPLVELLNFPDVKVQRAAAGALRT 251

Query:   234 LAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGAL 293
             ++F+NDENK+QIVE NALPTL+LML+S+DS +H EA+G IGNLVHSSP+IKKEV+ AGAL
Sbjct:   252 VSFRNDENKSQIVELNALPTLVLMLQSQDSTVHGEAIGAIGNLVHSSPDIKKEVIRAGAL 311

Query:   294 QPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMS 353
             QPVIGLLSS C E+QREAALL+GQFAA DSDCKVHI QRGA+ PLI+ML+S D Q+ EMS
Sbjct:   312 QPVIGLLSSTCLETQREAALLIGQFAAPDSDCKVHIAQRGAITPLIKMLESSDEQVVEMS 371

Query:   354 AFALGRLAQ 362
             AFALGRLAQ
Sbjct:   372 AFALGRLAQ 380

GO:0009507 "chloroplast" evidence=ISM

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=IDA

GO:0006261 "DNA-dependent DNA replication" evidence=TAS

GO:0008285 "negative regulation of cell proliferation" evidence=IMP

GO:0031261 "DNA replication preinitiation complex" evidence=IDA

GO:0042127 "regulation of cell proliferation" evidence=IMP

GO:2000104 "negative regulation of DNA-dependent DNA replication" evidence=IMP

ASPGD|ASPL0000008980 AN12408 [Emericella nidulans (taxid:162425)]

 Score = 261 (96.9 bits), Expect = 3.8e-20, P = 3.8e-20
 Identities = 80/250 (32%), Positives = 130/250 (52%)

Query:   125 LKPFEHEVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRR 184
             L+  + EV++ ++ ALG LAV  +++ LIV   AL  L  L+K+ M  N     N+V   
Sbjct:   115 LQSSDIEVQRAASAALGNLAVNADNKVLIV---ALGGLAPLIKQMMSPNVEVQCNAV--- 168

Query:   185 AADAITNLA-HENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKN 243
                 ITNLA HE++  K ++   G + PL+ L +  D +VQR A GAL  +   +D+N+ 
Sbjct:   169 --GCITNLATHEDN--KAKIARSGALGPLIRLAKSKDMRVQRNATGALLNMTH-SDDNRQ 223

Query:   244 QIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGAL-QPVIGLLSS 302
             Q+V   A+P L+ +L S D  + Y     + N+   + N K+       L Q ++ L+ S
Sbjct:   224 QLVNAGAIPVLVQLLSSSDVDVQYYCTTALSNIAVDASNRKRLAQTESRLVQSLVHLMDS 283

Query:   303 CCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQ 362
                + Q +AAL L   A+ D   ++ IV+   + PL+ +LQS  + L  +SA A  R   
Sbjct:   284 STPKVQCQAALALRNLAS-DEKYQLEIVRAKGLPPLLRLLQSSYLPLI-LSAVACIRNIS 341

Query:   363 VITVSVLPAI 372
             +  ++  P I
Sbjct:   342 IHPLNESPII 351

GO:0000329 "fungal-type vacuole membrane" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0003674 "molecular_function" evidence=ND

GO:0000011 "vacuole inheritance" evidence=IEA

CGD|CAL0001835 VAC8 [Candida albicans (taxid:5476)]

 Score = 237 (88.5 bits), Expect = 3.0e-17, P = 3.0e-17
 Identities = 68/219 (31%), Positives = 114/219 (52%)

Query:   125 LKPFEHEVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRR 184
             L+  + EV++ +  ALG LAV  E++ LIV+ G L  L+   ++ M +N     N+V   
Sbjct:    96 LQSADSEVQRAACGALGNLAVNTENKILIVEMGGLEPLI---RQMMSTNIEVQCNAV--- 149

Query:   185 AADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQ 244
                 ITNLA ++ + K+++   G + PL +L +  D +VQR A GAL  +     EN+ +
Sbjct:   150 --GCITNLATQDDN-KSKIAKSGALIPLTKLAKSKDIRVQRNATGALLNMTHSG-ENRQE 205

Query:   245 IVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQ-PVIGLLSSC 303
             +V   A+P L+ +L +ED+ + Y     + N+     N KK       L   ++ L+ S 
Sbjct:   206 LVNAGAVPVLVSLLSNEDADVQYYCTTALSNIAVDEVNRKKLASTEPKLVGQLVHLMDSP 265

Query:   304 CSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEML 342
                 Q +A L L   A+ DS  +V IV+ G +  L+++L
Sbjct:   266 SPRVQCQATLALRNLAS-DSGYQVEIVRAGGLPHLVQLL 303

GO:0000011 "vacuole inheritance" evidence=ISS;IMP

GO:0030448 "hyphal growth" evidence=IMP

GO:0000324 "fungal-type vacuole" evidence=ISS

GO:0000329 "fungal-type vacuole membrane" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0071563 "Myo2p-Vac17p-Vac8p transport complex" evidence=IEA

GO:0071561 "nucleus-vacuole junction" evidence=IEA

GO:0043495 "protein anchor" evidence=IEA

GO:0071216 "cellular response to biotic stimulus" evidence=IMP

GO:0030447 "filamentous growth" evidence=IMP

GO:0036180 "filamentous growth of a population of unicellular organisms in response to biotic stimulus" evidence=IMP

GO:0071562 "nucleus-vacuole junction assembly" evidence=IEA

GO:0071255 "CVT vesicle assembly" evidence=IEA

GO:0042144 "vacuole fusion, non-autophagic" evidence=IEA

GO:0016236 "macroautophagy" evidence=IEA

UNIPROTKB|Q59MN0 VAC8 "Vacuolar protein 8" [Candida albicans SC5314 (taxid:237561)]

 Score = 237 (88.5 bits), Expect = 3.0e-17, P = 3.0e-17
 Identities = 68/219 (31%), Positives = 114/219 (52%)

Query:   125 LKPFEHEVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRR 184
             L+  + EV++ +  ALG LAV  E++ LIV+ G L  L+   ++ M +N     N+V   
Sbjct:    96 LQSADSEVQRAACGALGNLAVNTENKILIVEMGGLEPLI---RQMMSTNIEVQCNAV--- 149

Query:   185 AADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQ 244
                 ITNLA ++ + K+++   G + PL +L +  D +VQR A GAL  +     EN+ +
Sbjct:   150 --GCITNLATQDDN-KSKIAKSGALIPLTKLAKSKDIRVQRNATGALLNMTHSG-ENRQE 205

Query:   245 IVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQ-PVIGLLSSC 303
             +V   A+P L+ +L +ED+ + Y     + N+     N KK       L   ++ L+ S 
Sbjct:   206 LVNAGAVPVLVSLLSNEDADVQYYCTTALSNIAVDEVNRKKLASTEPKLVGQLVHLMDSP 265

Query:   304 CSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEML 342
                 Q +A L L   A+ DS  +V IV+ G +  L+++L
Sbjct:   266 SPRVQCQATLALRNLAS-DSGYQVEIVRAGGLPHLVQLL 303

GO:0000011 "vacuole inheritance" evidence=ISS;IMP

GO:0000324 "fungal-type vacuole" evidence=ISS

GO:0030447 "filamentous growth" evidence=IMP

GO:0030448 "hyphal growth" evidence=IMP

GO:0036180 "filamentous growth of a population of unicellular organisms in response to biotic stimulus" evidence=IMP

GO:0071216 "cellular response to biotic stimulus" evidence=IMP

SGD|S000000739 VAC8 "Phosphorylated and palmitoylated vacuolar membrane protein" [Saccharomyces cerevisiae (taxid:4932)]

 Score = 229 (85.7 bits), Expect = 2.5e-16, P = 2.5e-16
 Identities = 66/226 (29%), Positives = 114/226 (50%)

Query:   125 LKPFEHEVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRR 184
             L+  + +++  +  ALG LAV  E++ LIV+ G L  L+N +   M  N     N+V   
Sbjct:    94 LQSQDPQIQVAACAALGNLAVNNENKLLIVEMGGLEPLINQM---MGDNVEVQCNAV--- 147

Query:   185 AADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQ 244
                 ITNLA  + + K ++   G + PL +L +    +VQR A GAL  +   ++EN+ +
Sbjct:   148 --GCITNLATRDDN-KHKIATSGALIPLTKLAKSKHIRVQRNATGALLNMTH-SEENRKE 203

Query:   245 IVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGAL-QPVIGLLSSC 303
             +V   A+P L+ +L S D  + Y     + N+     N KK       L   ++ L+ S 
Sbjct:   204 LVNAGAVPVLVSLLSSTDPDVQYYCTTALSNIAVDEANRKKLAQTEPRLVSKLVSLMDSP 263

Query:   304 CSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQL 349
              S  + +A L L   A+ D+  ++ IV+ G +  L++++QS  + L
Sbjct:   264 SSRVKCQATLALRNLAS-DTSYQLEIVRAGGLPHLVKLIQSDSIPL 308

GO:0042144 "vacuole fusion, non-autophagic" evidence=IMP

GO:0043495 "protein anchor" evidence=IMP;IPI

GO:0071562 "nucleus-vacuole junction assembly" evidence=IMP

GO:0071561 "nucleus-vacuole junction" evidence=IDA;IPI

GO:0000011 "vacuole inheritance" evidence=IEA;IMP

GO:0071255 "CVT vesicle assembly" evidence=IMP

GO:0016236 "macroautophagy" evidence=IMP

GO:0034727 "piecemeal microautophagy of nucleus" evidence=IMP

GO:0000329 "fungal-type vacuole membrane" evidence=IDA

GO:0071563 "Myo2p-Vac17p-Vac8p transport complex" evidence=IDA;IPI

GO:0005774 "vacuolar membrane" evidence=IEA

GO:0005773 "vacuole" evidence=IEA

GO:0016020 "membrane" evidence=IEA

TAIR|locus:2055033 ARABIDILLO-1 "AT2G44900" [Arabidopsis thaliana (taxid:3702)]

 Score = 224 (83.9 bits), Expect = 2.2e-15, P = 2.2e-15
 Identities = 87/304 (28%), Positives = 134/304 (44%)

Query:    65 VLNTTFSWLEADRAAAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRN 124
             +L    SW E  ++ A +A   +A L+ N  +   + E G +  L               
Sbjct:   443 LLELAKSWREGLQSEAAKA---IANLSVNANIAKSVAEEGGIKILAGLA----------- 488

Query:   125 LKPFEHEVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRR 184
              K     V + +A  L  L+V  EH+  I   G +  LV+L+ R   + C    + V+ R
Sbjct:   489 -KSMNRLVAEEAAGGLWNLSVGEEHKNAIAQAGGVKALVDLIFR-WPNGC----DGVLER 542

Query:   185 AADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTK-VQRAAAGALRTLAFKNDENKN 243
             AA A+ NLA ++      V   GG+  LV L      + VQ  AA AL  LA   D N N
Sbjct:   543 AAGALANLAADDKC-SMEVAKAGGVHALVMLARNCKYEGVQEQAARALANLAAHGDSNNN 601

Query:   244 QIV---ECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLL 300
                   E  AL  L+ + +S    +  EA G + NL     N ++ +  AG ++ ++ L 
Sbjct:   602 NAAVGQEAGALEALVQLTKSPHEGVRQEAAGALWNLSFDDKN-RESISVAGGVEALVALA 660

Query:   301 SSCCSES---QREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFAL 357
              SC + S   Q  AA  L   + ++++  V I + G V PLI + +S    + E +A AL
Sbjct:   661 QSCSNASTGLQERAAGALWGLSVSEAN-SVAIGREGGVPPLIALARSEAEDVHETAAGAL 719

Query:   358 GRLA 361
               LA
Sbjct:   720 WNLA 723

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0048527 "lateral root development" evidence=IGI;IMP

GO:0005515 "protein binding" evidence=IPI

POMBASE|SPBC354.14c vac8 "vacuolar protein Vac8 (predicted)" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 219 (82.2 bits), Expect = 3.2e-15, P = 3.2e-15
 Identities = 63/216 (29%), Positives = 111/216 (51%)

Query:   131 EVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVN-LLKRHMDSNCSRAVNSVIRRAADAI 189
             E+++ ++ ALG LAV  E++ L+V    L  L+  ++  H++  C+         A   I
Sbjct:   100 EIQRAASVALGNLAVNAENKALVVKLNGLDLLIRQMMSPHVEVQCN---------AVGCI 150

Query:   190 TNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECN 249
             TNLA  + + K+++   G + PL  L +  D +VQR A GAL  +     EN+ Q+V   
Sbjct:   151 TNLATLDEN-KSKIAHSGALGPLTRLAKSKDIRVQRNATGALLNMTHSY-ENRQQLVSAG 208

Query:   250 ALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGAL-QPVIGLLSSCCSESQ 308
              +P L+ +L S D+ + Y     I N+   + + K+   +   L + +I L+ +   + Q
Sbjct:   209 TIPVLVSLLPSSDTDVQYYCTTSISNIAVDAVHRKRLAQSEPKLVRSLIQLMDTSSPKVQ 268

Query:   309 REAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQS 344
              +AAL L   A+ D   ++ IVQ  A+  L+ +L+S
Sbjct:   269 CQAALALRNLAS-DERYQIEIVQSNALPSLLRLLRS 303

GO:0000011 "vacuole inheritance" evidence=ISO

GO:0000139 "Golgi membrane" evidence=IEA

GO:0000324 "fungal-type vacuole" evidence=ISO

GO:0000329 "fungal-type vacuole membrane" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0016236 "macroautophagy" evidence=ISO

GO:0042144 "vacuole fusion, non-autophagic" evidence=ISO

GO:0043234 "protein complex" evidence=NAS

GO:0043495 "protein anchor" evidence=ISO

GO:0071255 "CVT vesicle assembly" evidence=ISO

TAIR|locus:2103351 ARABIDILLO-2 "AT3G60350" [Arabidopsis thaliana (taxid:3702)]

 Score = 208 (78.3 bits), Expect = 2.4e-13, Sum P(2) = 2.4e-13
 Identities = 85/305 (27%), Positives = 136/305 (44%)

Query:    65 VLNTTFSWLEADRAAAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRN 124
             +L    SW E  ++ A +A   +A L+ N +V   + E G +  L           AD  
Sbjct:   434 LLELAKSWREGLQSEAAKA---IANLSVNAKVAKAVAEEGGISVL-----------ADL- 478

Query:   125 LKPFEHEVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRR 184
              K     V + +A  L  L+V  EH+  I   G ++ LV+L+ R     C    + V+ R
Sbjct:   479 AKSMNRLVAEEAAGGLWNLSVGEEHKNAIAQAGGVNALVDLIFR-WPHGC----DGVLER 533

Query:   185 AADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTK-VQRAAAGALRTLAFKNDENKN 243
             AA A+ NLA ++      V   GG+  LV L      +  Q  AA AL  LA   D N N
Sbjct:   534 AAGALANLAADDKC-SMEVARAGGVHALVMLARNCKYEGAQEQAARALANLAAHGDSNGN 592

Query:   244 QIV---ECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLL 300
                   E  AL  L+ + +S    +  EA G + NL     N ++ + A G ++ ++ L 
Sbjct:   593 NAAVGQEAGALEALVQLTQSPHEGVKQEAAGALWNLAFDDKN-RESIAAFGGVEALVALA 651

Query:   301 SSCCSES----QREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFA 356
              S  + S    +R A  L G  + ++++  + I   G + PLI +++S    + E +A A
Sbjct:   652 KSSSNASTGLQERVAGALWG-LSVSEAN-SIAIGHEGGIPPLIALVRSEAEDVHETAAGA 709

Query:   357 LGRLA 361
             L  L+
Sbjct:   710 LWNLS 714

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=ISS

GO:0048527 "lateral root development" evidence=IGI;IMP

ASPGD|ASPL0000045550 kapA [Emericella nidulans (taxid:162425)]

 Score = 176 (67.0 bits), Expect = 4.7e-13, Sum P(2) = 4.7e-13
 Identities = 51/189 (26%), Positives = 96/189 (50%)

Query:   179 NSVIRRAADAITNLAHENSSIKTRVRMEGGIPP-LVELLEFTDTKVQRAAAGALRTLAFK 237
             + V+  A  AI+ L+ +  + K +  +E GIP  LVELL    T VQ  A  ++  +   
Sbjct:   266 DEVLIDACWAISYLS-DGPNEKIQAVIEAGIPRRLVELLMHASTSVQTPALRSVGNIVTG 324

Query:   238 NDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVI 297
             +D     I+ C ALP L+ +L S    I  EA   I N+   + +  + V+ AG + P++
Sbjct:   325 DDVQTQVIINCGALPALLSLLSSTKDGIRKEACWTISNITAGNSSQIQSVIDAGIIPPLV 384

Query:   298 GLLSSCCSESQREAALLLGQFAA---TDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSA 354
              LL++   ++++EA   +    +      D   ++V +G ++PL ++L  PD ++ +++ 
Sbjct:   385 HLLANGDFKTRKEACWAISNATSGGLQKPDQIRYLVTQGCIKPLCDLLACPDNKIIQVAL 444

Query:   355 FALGRLAQV 363
               L  + +V
Sbjct:   445 DGLENILKV 453

GO:0006606 "protein import into nucleus" evidence=IMP

GO:0005635 "nuclear envelope" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

GO:0030674 "protein binding, bridging" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005643 "nuclear pore" evidence=IEA

GO:0008565 "protein transporter activity" evidence=IEA

GO:0030261 "chromosome condensation" evidence=IEA

GO:0033554 "cellular response to stress" evidence=IEA

GO:0000087 "M phase of mitotic cell cycle" evidence=IEA

GO:0007346 "regulation of mitotic cell cycle" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
B9DHT4	ARIA_ARATH	No assigned EC number	0.8055	0.8746	0.4915	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00019944001 SubName- Full=Chromosome chr5 scaffold_2, whole genome shotgun sequence; (581 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	399
cd00020	120	cd00020, ARM, Armadillo/beta-catenin-like repeats	7e-21
cd00020	120	cd00020, ARM, Armadillo/beta-catenin-like repeats	1e-19
cd00020	120	cd00020, ARM, Armadillo/beta-catenin-like repeats	2e-14
cd00020	120	cd00020, ARM, Armadillo/beta-catenin-like repeats	8e-13
COG5064	526	COG5064, SRP1, Karyopherin (importin) alpha [Intra	2e-10
PLN03200	2102	PLN03200, PLN03200, cellulose synthase-interactive	1e-09
cd00020	120	cd00020, ARM, Armadillo/beta-catenin-like repeats	4e-09
COG5064	526	COG5064, SRP1, Karyopherin (importin) alpha [Intra	7e-09
PLN03200	2102	PLN03200, PLN03200, cellulose synthase-interactive	1e-07
PLN03200	2102	PLN03200, PLN03200, cellulose synthase-interactive	2e-05
smart00185	41	smart00185, ARM, Armadillo/beta-catenin-like repea	2e-05
pfam00514	41	pfam00514, Arm, Armadillo/beta-catenin-like repeat	2e-05
smart00185	41	smart00185, ARM, Armadillo/beta-catenin-like repea	5e-05
PLN03200	2102	PLN03200, PLN03200, cellulose synthase-interactive	6e-05
pfam01602	522	pfam01602, Adaptin_N, Adaptin N terminal region	6e-05
pfam00514	41	pfam00514, Arm, Armadillo/beta-catenin-like repeat	7e-05
PLN03200	2102	PLN03200, PLN03200, cellulose synthase-interactive	4e-04
COG5064	526	COG5064, SRP1, Karyopherin (importin) alpha [Intra	6e-04
COG5064	526	COG5064, SRP1, Karyopherin (importin) alpha [Intra	0.001
pfam00514	41	pfam00514, Arm, Armadillo/beta-catenin-like repeat	0.002
smart00185	41	smart00185, ARM, Armadillo/beta-catenin-like repea	0.003
pfam00514	41	pfam00514, Arm, Armadillo/beta-catenin-like repeat	0.004

>gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats

 Score = 87.0 bits (216), Expect = 7e-21
 Identities = 43/118 (36%), Positives = 62/118 (52%)

Query: 203 VRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSED 262
           V   GG+P LV LL  +D  VQR AA AL  L+  N++N   +VE   LP L+ +L+SED
Sbjct: 3   VIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSED 62

Query: 263 SAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAA 320
             +   A+  + NL     + K  VL AG +  ++ LL S   + Q+ A   L   A+
Sbjct: 63  EEVVKAALWALRNLAAGPEDNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLAS 120

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120

>gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats

 Score = 83.5 bits (207), Expect = 1e-19
 Identities = 43/127 (33%), Positives = 67/127 (52%), Gaps = 8/127 (6%)

Query: 151 QLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIP 210
           + ++  G L  LV+LL    ++        V R AA A++NL+  N+     V   GG+P
Sbjct: 1   EAVIQAGGLPALVSLLSSSDEN--------VQREAAWALSNLSAGNNDNIQAVVEAGGLP 52

Query: 211 PLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAV 270
            LV+LL+  D +V +AA  ALR LA   ++NK  ++E   +P L+ +L S +  I   A 
Sbjct: 53  ALVQLLKSEDEEVVKAALWALRNLAAGPEDNKLIVLEAGGVPKLVNLLDSSNEDIQKNAT 112

Query: 271 GVIGNLV 277
           G + NL 
Sbjct: 113 GALSNLA 119

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120

>gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats

 Score = 68.9 bits (169), Expect = 2e-14
 Identities = 42/138 (30%), Positives = 67/138 (48%), Gaps = 21/138 (15%)

Query: 99  WIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAV-KPEHQQLIVDNG 157
            +++ G +PALV  L +             +  V++ +A+AL  L+    ++ Q +V+ G
Sbjct: 2   AVIQAGGLPALVSLLSSS------------DENVQREAAWALSNLSAGNNDNIQAVVEAG 49

Query: 158 ALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLE 217
            L  LV LLK   +         V++ A  A+ NLA      K  V   GG+P LV LL+
Sbjct: 50  GLPALVQLLKSEDE--------EVVKAALWALRNLAAGPEDNKLIVLEAGGVPKLVNLLD 101

Query: 218 FTDTKVQRAAAGALRTLA 235
            ++  +Q+ A GAL  LA
Sbjct: 102 SSNEDIQKNATGALSNLA 119

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120

>gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats

 Score = 64.3 bits (157), Expect = 8e-13
 Identities = 33/119 (27%), Positives = 58/119 (48%)

Query: 244 QIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSC 303
            +++   LP L+ +L S D  +  EA   + NL   + +  + V+ AG L  ++ LL S 
Sbjct: 2   AVIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSE 61

Query: 304 CSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQ 362
             E  + A   L   AA   D K+ +++ G V  L+ +L S +  +++ +  AL  LA 
Sbjct: 62  DEEVVKAALWALRNLAAGPEDNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLAS 120

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120

>gnl|CDD|227396 COG5064, SRP1, Karyopherin (importin) alpha [Intracellular trafficking and secretion]

 Score = 61.8 bits (150), Expect = 2e-10
 Identities = 58/259 (22%), Positives = 117/259 (45%), Gaps = 19/259 (7%)

Query: 100 IVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAV-KPEHQQLIVDNGA 158
           +V+ GAVP  ++ L +             E +V + + +ALG +A      +  ++  GA
Sbjct: 153 VVDAGAVPLFIQLLSST------------EDDVREQAVWALGNIAGDSEGCRDYVLQCGA 200

Query: 159 LSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEF 218
           L  L+ LL        S    S++R A   ++NL    +       +   +P L +L+  
Sbjct: 201 LEPLLGLL------LSSAIHISMLRNATWTLSNLCRGKNPPPDWSNISQALPILAKLIYS 254

Query: 219 TDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVH 278
            D +V   A  A+  L+   +E    +++      L+ +L  E + I   A+  +GN+V 
Sbjct: 255 RDPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSHESAKIQTPALRSVGNIVT 314

Query: 279 SSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPL 338
            S +  + ++  GAL+    LLSS     ++EA   +    A +++    ++    + PL
Sbjct: 315 GSDDQTQVIINCGALKAFRSLLSSPKENIRKEACWTISNITAGNTEQIQAVIDANLIPPL 374

Query: 339 IEMLQSPDVQLREMSAFAL 357
           I +L S + ++++ + +A+
Sbjct: 375 IHLLSSAEYKIKKEACWAI 393

Length = 526

>gnl|CDD|215629 PLN03200, PLN03200, cellulose synthase-interactive protein; Provisional

 Score = 59.7 bits (145), Expect = 1e-09
 Identities = 79/296 (26%), Positives = 130/296 (43%), Gaps = 33/296 (11%)

Query: 75   ADRA-AAKRATHVLAELAKNEEVVNWI-VEGGAVPALVKHLQAPPTSEADRNLKPFEHEV 132
             DR  A   A  +L +LA+  +V      E GA+ AL K+L   P           +   
Sbjct: 1159 PDRPGAPPLALGLLTQLAEGSDVNKLAMAEAGALDALTKYLSLGP-----------QDST 1207

Query: 133  EKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLK---RHMDSNCSRAVNSVIRRAADAI 189
            E+ ++  L +L   PE ++     GA++ LV +L+   R    + +RA+  +   +A+ I
Sbjct: 1208 EEAASELLRILFSSPELRRHESAFGAVNQLVAVLRLGSRSARYSAARALQELF--SAEHI 1265

Query: 190  TNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQI--VE 247
                  +S +  +      + PLVE+L       Q AA GAL  L+  N      I  VE
Sbjct: 1266 -----RDSELARQ-----AVQPLVEMLNTGSESEQHAAIGALIKLSSGNPSKALAIADVE 1315

Query: 248  CNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSES 307
             NAL  L  +L S+ S    E    +  ++ ++  I+    AA  ++P+I LL S  S +
Sbjct: 1316 GNALENLCKILSSDSSLELKEDAAELCRVLFTNTRIRSTPAAARCIEPLISLLVSESSTA 1375

Query: 308  QREAALLLGQFAATDSDCKVHIVQ-RGAVRPLIEMLQSPDVQLREMSAFALGRLAQ 362
            Q      L +    D +    +V   GAV PL+ ++   +  L E +  AL +L +
Sbjct: 1376 QEAGVCALDRL--LDDEQLAELVAAHGAVVPLVGLVVGTNYVLHEAAISALIKLGK 1429

Length = 2102

>gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats

 Score = 53.9 bits (130), Expect = 4e-09
 Identities = 26/78 (33%), Positives = 44/78 (56%)

Query: 286 EVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSP 345
            V+ AG L  ++ LLSS     QREAA  L   +A ++D    +V+ G +  L+++L+S 
Sbjct: 2   AVIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSE 61

Query: 346 DVQLREMSAFALGRLAQV 363
           D ++ + + +AL  LA  
Sbjct: 62  DEEVVKAALWALRNLAAG 79

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120

>gnl|CDD|227396 COG5064, SRP1, Karyopherin (importin) alpha [Intracellular trafficking and secretion]

 Score = 57.2 bits (138), Expect = 7e-09
 Identities = 41/170 (24%), Positives = 73/170 (42%), Gaps = 4/170 (2%)

Query: 195 ENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENK-NQIVECNALPT 253
           E+S I    +    +P L + L   D + Q  A    R L  K        +++   +P 
Sbjct: 59  ESSFIPMEQQFYSELPQLTQQLFSDDIEQQLQAVYKFRKLLSKETSPPIQPVIDAGVVPR 118

Query: 254 LI-LMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAA 312
            +  M   +   + +EA   + N+   +    K V+ AGA+   I LLSS   + + +A 
Sbjct: 119 FVEFMDEIQRDMLQFEAAWALTNIASGTTQQTKVVVDAGAVPLFIQLLSSTEDDVREQAV 178

Query: 313 LLLGQFAATDSDCKVHIVQRGAVRPLIEMLQS--PDVQLREMSAFALGRL 360
             LG  A     C+ +++Q GA+ PL+ +L S    + +   + + L  L
Sbjct: 179 WALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNL 228

Length = 526

>gnl|CDD|215629 PLN03200, PLN03200, cellulose synthase-interactive protein; Provisional

 Score = 53.6 bits (129), Expect = 1e-07
 Identities = 52/185 (28%), Positives = 89/185 (48%), Gaps = 8/185 (4%)

Query: 185 AADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALR--TLAFKNDENK 242
           AA  +  L  E   ++ +V + G IPPL+ LL+    + Q+AAA A+   +    +D   
Sbjct: 78  AAAVLGVLCKEED-LRVKVLLGGCIPPLLSLLKSGSAEAQKAAAEAIYAVSSGGLSDHVG 136

Query: 243 NQI-VECNALPTLILMLRS---EDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIG 298
           ++I      +P+L   L+    +D  +     G + NL  S+       L AG +  ++ 
Sbjct: 137 SKIFSTEGVVPSLWDQLQPGNKQDKVVEGLLTGALRNLCGSTDGFWSATLEAGGVDILVK 196

Query: 299 LLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEML-QSPDVQLREMSAFAL 357
           LLSS  S++Q  AA LL +           ++  GAV+ L+++L Q  +V +R  +A AL
Sbjct: 197 LLSSGNSDAQANAASLLARLMMAFESSISKVLDAGAVKQLLKLLGQGNEVSVRAEAAGAL 256

Query: 358 GRLAQ 362
             L+ 
Sbjct: 257 EALSS 261

Length = 2102

>gnl|CDD|215629 PLN03200, PLN03200, cellulose synthase-interactive protein; Provisional

 Score = 46.2 bits (110), Expect = 2e-05
 Identities = 51/221 (23%), Positives = 88/221 (39%), Gaps = 37/221 (16%)

Query: 177 AVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAF 236
           A   V      A+++L      +   +    G+  L+ LL  +  + Q  A   L  L  
Sbjct: 416 ATADVQEELIRALSSLCCGKGGLWEALGGREGVQLLISLLGLSSEQQQEYAVALLAILTD 475

Query: 237 KNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPV 296
           + DE+K  I     +P L+ +L +       ++  V+ NL   S +I+  V +AGA+  +
Sbjct: 476 EVDESKWAITAAGGIPPLVQLLETGSQKAKEDSATVLWNLCCHSEDIRACVESAGAVPAL 535

Query: 297 IGLLSSCCSESQREAALLLGQF-----AAT-----------DSDCKVH------------ 328
           + LL +   + Q  AA  L +      AAT             + KVH            
Sbjct: 536 LWLLKNGGPKGQEIAAKTLTKLVRTADAATISQLTALLLGDLPESKVHVLDVLGHVLSVA 595

Query: 329 ----IVQRG-----AVRPLIEMLQSPDVQLREMSAFALGRL 360
               +V+ G     A+R LI++L S   + +E +A  L  +
Sbjct: 596 SLEDLVREGSAANDALRTLIQLLSSSKEETQEKAASVLADI 636

Length = 2102

>gnl|CDD|214547 smart00185, ARM, Armadillo/beta-catenin-like repeats

 Score = 40.9 bits (97), Expect = 2e-05
 Identities = 16/41 (39%), Positives = 24/41 (58%)

Query: 238 NDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVH 278
           +DENK  +V+   LP L+ +L+SED  +  EA   + NL  
Sbjct: 1   DDENKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLSS 41

Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin. Length = 41

>gnl|CDD|201276 pfam00514, Arm, Armadillo/beta-catenin-like repeat

 Score = 40.9 bits (97), Expect = 2e-05
 Identities = 14/41 (34%), Positives = 22/41 (53%)

Query: 238 NDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVH 278
           + ENK  ++E  A+P L+ +L S D  +  EA   + NL  
Sbjct: 1   SPENKQAVIEAGAVPPLVQLLSSPDEEVQEEAAWALSNLAA 41

Approx. 40 amino acid repeat. Tandem repeats form super-helix of helices that is proposed to mediate interaction of beta-catenin with its ligands. CAUTION: This family does not contain all known armadillo repeats. Length = 41

>gnl|CDD|214547 smart00185, ARM, Armadillo/beta-catenin-like repeats

 Score = 40.1 bits (95), Expect = 5e-05
 Identities = 17/41 (41%), Positives = 23/41 (56%)

Query: 196 NSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAF 236
           +   K  V   GG+P LVELL+  D +V + AA AL  L+ 
Sbjct: 1   DDENKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLSS 41

Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin. Length = 41

>gnl|CDD|215629 PLN03200, PLN03200, cellulose synthase-interactive protein; Provisional

 Score = 45.1 bits (107), Expect = 6e-05
 Identities = 46/214 (21%), Positives = 83/214 (38%), Gaps = 38/214 (17%)

Query: 185 AADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKND----- 239
           +A  + NL   +  I+  V   G +P L+ LL+    K Q  AA  L  L    D     
Sbjct: 508 SATVLWNLCCHSEDIRACVESAGAVPALLWLLKNGGPKGQEIAAKTLTKLVRTADAATIS 567

Query: 240 -----------ENKNQIVEC---------------------NALPTLILMLRSEDSAIHY 267
                      E+K  +++                      +AL TLI +L S       
Sbjct: 568 QLTALLLGDLPESKVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQLLSSSKEETQE 627

Query: 268 EAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQ-FAATDSDCK 326
           +A  V+ ++  S  ++ + +     + P I LL++       ++A  L     +   + K
Sbjct: 628 KAASVLADIFSSRQDLCESLATDEIINPCIKLLTNNTEAVATQSARALAALSRSIKENRK 687

Query: 327 VHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRL 360
           V      A++PLI++ +S  +++ E +  AL  L
Sbjct: 688 VSYAAEDAIKPLIKLAKSSSIEVAEQAVCALANL 721

Length = 2102

>gnl|CDD|216598 pfam01602, Adaptin_N, Adaptin N terminal region

 Score = 44.5 bits (106), Expect = 6e-05
 Identities = 42/199 (21%), Positives = 80/199 (40%), Gaps = 30/199 (15%)

Query: 165 LLKRHMDSNCSRA-VNSVIR-RAADAITNLAHENSSIKTRVRMEGGIPPLVELLEF---- 218
           +    +   C +   +  IR RA D +  L  E S++K  V+         ELL++    
Sbjct: 300 VQHLDLIIFCLKTDDDISIRLRALDLLYKLVDE-SNVKEIVK---------ELLKYVSEI 349

Query: 219 TDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVH 278
            D + +     A+  LA K   +    +       L+ +L    S +  E V VI +++ 
Sbjct: 350 ADPEFKIKLVKAIGRLAEKFPTDAEWCI-----DVLLELLSLAGSYVVDEIVEVIRDIIR 404

Query: 279 SSPNIKKEVLAAGALQPVIGLLSSCCSESQREAAL-LLGQFAATDSDCKVHIVQRGAVRP 337
             P +++       L+ +  LL    S   R AAL +LG++     +    +++      
Sbjct: 405 KYPELREY-----ILEHLCELLEDIESPEARAAALWILGEYGELIPNSPSDLLRSILEVF 459

Query: 338 LIEMLQSPDVQLREMSAFA 356
              +L+S  V+L  ++A  
Sbjct: 460 ---VLESLKVRLALLTALV 475

This family consists of the N terminal region of various alpha, beta and gamma subunits of the AP-1, AP-2 and AP-3 adaptor protein complexes. The adaptor protein (AP) complexes are involved in the formation of clathrin-coated pits and vesicles. The N-terminal region of the various adaptor proteins (APs) is constant by comparison to the C-terminal which is variable within members of the AP-2 family; and it has been proposed that this constant region interacts with another uniform component of the coated vesicles. Length = 522

>gnl|CDD|201276 pfam00514, Arm, Armadillo/beta-catenin-like repeat

 Score = 39.4 bits (93), Expect = 7e-05
 Identities = 18/40 (45%), Positives = 22/40 (55%)

Query: 196 NSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLA 235
           +   K  V   G +PPLV+LL   D +VQ  AA AL  LA
Sbjct: 1   SPENKQAVIEAGAVPPLVQLLSSPDEEVQEEAAWALSNLA 40

Approx. 40 amino acid repeat. Tandem repeats form super-helix of helices that is proposed to mediate interaction of beta-catenin with its ligands. CAUTION: This family does not contain all known armadillo repeats. Length = 41

>gnl|CDD|215629 PLN03200, PLN03200, cellulose synthase-interactive protein; Provisional

 Score = 42.4 bits (100), Expect = 4e-04
 Identities = 50/206 (24%), Positives = 80/206 (38%), Gaps = 37/206 (17%)

Query: 192 LAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNAL 251
           L  E    K  +   GGIPPLV+LLE    K +  +A  L  L   +++ +  +    A+
Sbjct: 473 LTDEVDESKWAITAAGGIPPLVQLLETGSQKAKEDSATVLWNLCCHSEDIRACVESAGAV 532

Query: 252 PTLILMLRSEDSAIHYEAVGVIGNLVHSS----------------PNIKKEVL------- 288
           P L+ +L++        A   +  LV ++                P  K  VL       
Sbjct: 533 PALLWLLKNGGPKGQEIAAKTLTKLVRTADAATISQLTALLLGDLPESKVHVLDVLGHVL 592

Query: 289 --------------AAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGA 334
                         A  AL+ +I LLSS   E+Q +AA +L    ++  D    +     
Sbjct: 593 SVASLEDLVREGSAANDALRTLIQLLSSSKEETQEKAASVLADIFSSRQDLCESLATDEI 652

Query: 335 VRPLIEMLQSPDVQLREMSAFALGRL 360
           + P I++L +    +   SA AL  L
Sbjct: 653 INPCIKLLTNNTEAVATQSARALAAL 678

Length = 2102

>gnl|CDD|227396 COG5064, SRP1, Karyopherin (importin) alpha [Intracellular trafficking and secretion]

 Score = 41.8 bits (98), Expect = 6e-04
 Identities = 52/236 (22%), Positives = 97/236 (41%), Gaps = 23/236 (9%)

Query: 151 QLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRME-GGI 209
           Q ++D G +   V  +            + +   AA A+TN+A   ++ +T+V ++ G +
Sbjct: 108 QPVIDAGVVPRFVEFMDEIQR-------DMLQFEAAWALTNIA-SGTTQQTKVVVDAGAV 159

Query: 210 PPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYE- 268
           P  ++LL  T+  V+  A  AL  +A  ++  ++ +++C AL  L+ +L S  SAIH   
Sbjct: 160 PLFIQLLSSTEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLS--SAIHISM 217

Query: 269 ---AVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDC 325
              A   + NL             + AL  +  L+ S   E   +A   +   +   ++ 
Sbjct: 218 LRNATWTLSNLCRGKNPPPDWSNISQALPILAKLIYSRDPEVLVDACWAISYLSDGPNEK 277

Query: 326 KVHIVQRGAVRPLIEMLQSPDVQ-----LREMSAFALGRLAQ---VITVSVLPAIL 373
              ++  G    L+E+L     +     LR +     G   Q   +I    L A  
Sbjct: 278 IQAVLDVGIPGRLVELLSHESAKIQTPALRSVGNIVTGSDDQTQVIINCGALKAFR 333

Length = 526

>gnl|CDD|227396 COG5064, SRP1, Karyopherin (importin) alpha [Intracellular trafficking and secretion]

 Score = 40.3 bits (94), Expect = 0.001
 Identities = 34/116 (29%), Positives = 54/116 (46%), Gaps = 4/116 (3%)

Query: 249 NALPTLILMLRSEDSAIHYEAVGVIGNL--VHSSPNIKKEVLAAGALQPVIGLLSSCCSE 306
           + LP L   L S+D     +AV     L    +SP I+  V+ AG +   +  +     +
Sbjct: 71  SELPQLTQQLFSDDIEQQLQAVYKFRKLLSKETSPPIQP-VIDAGVVPRFVEFMDEIQRD 129

Query: 307 -SQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLA 361
             Q EAA  L   A+  +     +V  GAV   I++L S +  +RE + +ALG +A
Sbjct: 130 MLQFEAAWALTNIASGTTQQTKVVVDAGAVPLFIQLLSSTEDDVREQAVWALGNIA 185

Length = 526

>gnl|CDD|201276 pfam00514, Arm, Armadillo/beta-catenin-like repeat

 Score = 35.1 bits (82), Expect = 0.002
 Identities = 16/40 (40%), Positives = 28/40 (70%)

Query: 322 DSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLA 361
             + K  +++ GAV PL+++L SPD +++E +A+AL  LA
Sbjct: 1   SPENKQAVIEAGAVPPLVQLLSSPDEEVQEEAAWALSNLA 40

Approx. 40 amino acid repeat. Tandem repeats form super-helix of helices that is proposed to mediate interaction of beta-catenin with its ligands. CAUTION: This family does not contain all known armadillo repeats. Length = 41

>gnl|CDD|214547 smart00185, ARM, Armadillo/beta-catenin-like repeats

 Score = 34.7 bits (81), Expect = 0.003
 Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 8/49 (16%)

Query: 146 KPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAH 194
             E++Q +VD G L  LV LLK   +         V++ AA A++NL+ 
Sbjct: 1   DDENKQAVVDAGGLPALVELLKSEDE--------EVVKEAAWALSNLSS 41

Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin. Length = 41

>gnl|CDD|201276 pfam00514, Arm, Armadillo/beta-catenin-like repeat

 Score = 34.7 bits (81), Expect = 0.004
 Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 8/48 (16%)

Query: 147 PEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAH 194
           PE++Q +++ GA+  LV LL    D         V   AA A++NLA 
Sbjct: 2   PENKQAVIEAGAVPPLVQLLS-SPDE-------EVQEEAAWALSNLAA 41

Approx. 40 amino acid repeat. Tandem repeats form super-helix of helices that is proposed to mediate interaction of beta-catenin with its ligands. CAUTION: This family does not contain all known armadillo repeats. Length = 41

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	399
KOG0166	514	consensus Karyopherin (importin) alpha [Intracellu	100.0
COG5064	526	SRP1 Karyopherin (importin) alpha [Intracellular t	100.0
KOG0166	514	consensus Karyopherin (importin) alpha [Intracellu	100.0
COG5064	526	SRP1 Karyopherin (importin) alpha [Intracellular t	100.0
PLN03200	2102	cellulose synthase-interactive protein; Provisiona	99.98
PLN03200	2102	cellulose synthase-interactive protein; Provisiona	99.97
KOG4224	550	consensus Armadillo repeat protein VAC8 required f	99.96
KOG4224	550	consensus Armadillo repeat protein VAC8 required f	99.96
PF05804	708	KAP: Kinesin-associated protein (KAP)	99.88
KOG2122	2195	consensus Beta-catenin-binding protein APC, contai	99.86
PF05804	708	KAP: Kinesin-associated protein (KAP)	99.85
KOG4199	461	consensus Uncharacterized conserved protein [Funct	99.78
KOG4199	461	consensus Uncharacterized conserved protein [Funct	99.77
KOG2122	2195	consensus Beta-catenin-binding protein APC, contai	99.73
PF04826	254	Arm_2: Armadillo-like; InterPro: IPR006911 This en	99.7
KOG1048	717	consensus Neural adherens junction protein Plakoph	99.66
KOG4500	604	consensus Rho/Rac GTPase guanine nucleotide exchan	99.64
PF04826	254	Arm_2: Armadillo-like; InterPro: IPR006911 This en	99.6
PF10508	503	Proteasom_PSMB: Proteasome non-ATPase 26S subunit;	99.59
KOG1048	717	consensus Neural adherens junction protein Plakoph	99.57
cd00020	120	ARM Armadillo/beta-catenin-like repeats. An approx	99.55
PF10508	503	Proteasom_PSMB: Proteasome non-ATPase 26S subunit;	99.55
cd00020	120	ARM Armadillo/beta-catenin-like repeats. An approx	99.55
PRK09687	280	putative lyase; Provisional	99.55
KOG4500	604	consensus Rho/Rac GTPase guanine nucleotide exchan	99.48
KOG1222	791	consensus Kinesin associated protein KAP [Intracel	99.45
KOG0168	1051	consensus Putative ubiquitin fusion degradation pr	99.44
KOG2160	342	consensus Armadillo/beta-catenin-like repeat-conta	99.41
PRK09687	280	putative lyase; Provisional	99.39
cd00256	429	VATPase_H VATPase_H, regulatory vacuolar ATP synth	99.37
KOG2171	1075	consensus Karyopherin (importin) beta 3 [Nuclear s	99.34
KOG2171	1075	consensus Karyopherin (importin) beta 3 [Nuclear s	99.33
KOG1222	791	consensus Kinesin associated protein KAP [Intracel	99.32
KOG2160	342	consensus Armadillo/beta-catenin-like repeat-conta	99.28
PRK13800	897	putative oxidoreductase/HEAT repeat-containing pro	99.25
KOG2023	885	consensus Nuclear transport receptor Karyopherin-b	99.21
KOG2759	442	consensus Vacuolar H+-ATPase V1 sector, subunit H	99.2
KOG1293	678	consensus Proteins containing armadillo/beta-caten	99.17
cd00256	429	VATPase_H VATPase_H, regulatory vacuolar ATP synth	99.17
KOG3678	832	consensus SARM protein (with sterile alpha and arm	99.15
PRK13800	897	putative oxidoreductase/HEAT repeat-containing pro	99.13
PF03224	312	V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004	99.12
PF03224	312	V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004	99.11
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	99.07
KOG0168	1051	consensus Putative ubiquitin fusion degradation pr	99.06
PF01602	526	Adaptin_N: Adaptin N terminal region; InterPro: IP	98.98
KOG2759	442	consensus Vacuolar H+-ATPase V1 sector, subunit H	98.97
KOG1293	678	consensus Proteins containing armadillo/beta-caten	98.97
KOG0946	970	consensus ER-Golgi vesicle-tethering protein p115	98.94
KOG2023	885	consensus Nuclear transport receptor Karyopherin-b	98.9
PF01602	526	Adaptin_N: Adaptin N terminal region; InterPro: IP	98.88
KOG1241	859	consensus Karyopherin (importin) beta 1 [Nuclear s	98.87
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	98.84
KOG0946	970	consensus ER-Golgi vesicle-tethering protein p115	98.83
PTZ00429	746	beta-adaptin; Provisional	98.81
KOG1241	859	consensus Karyopherin (importin) beta 1 [Nuclear s	98.8
KOG4646	173	consensus Uncharacterized conserved protein, conta	98.7
KOG4646	173	consensus Uncharacterized conserved protein, conta	98.59
KOG2973	353	consensus Uncharacterized conserved protein [Funct	98.59
KOG1062	866	consensus Vesicle coat complex AP-1, gamma subunit	98.57
PTZ00429	746	beta-adaptin; Provisional	98.55
PF10165	446	Ric8: Guanine nucleotide exchange factor synembryn	98.53
COG5369	743	Uncharacterized conserved protein [Function unknow	98.51
KOG0213	1172	consensus Splicing factor 3b, subunit 1 [RNA proce	98.47
COG5231	432	VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Ene	98.42
KOG3678	832	consensus SARM protein (with sterile alpha and arm	98.41
COG5215	858	KAP95 Karyopherin (importin) beta [Intracellular t	98.37
COG5231	432	VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Ene	98.34
KOG1059	877	consensus Vesicle coat complex AP-3, delta subunit	98.34
TIGR02270	410	conserved hypothetical protein. Members are found	98.33
PF00514	41	Arm: Armadillo/beta-catenin-like repeat; InterPro:	98.32
PF00514	41	Arm: Armadillo/beta-catenin-like repeat; InterPro:	98.31
PF14664	371	RICTOR_N: Rapamycin-insensitive companion of mTOR,	98.28
PF12348	228	CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi	98.28
PF14664	371	RICTOR_N: Rapamycin-insensitive companion of mTOR,	98.26
KOG1824	1233	consensus TATA-binding protein-interacting protein	98.22
KOG0212	675	consensus Uncharacterized conserved protein [Funct	98.2
COG5215	858	KAP95 Karyopherin (importin) beta [Intracellular t	98.2
KOG0212	675	consensus Uncharacterized conserved protein [Funct	98.17
KOG2734	536	consensus Uncharacterized conserved protein [Funct	98.17
KOG1062	866	consensus Vesicle coat complex AP-1, gamma subunit	98.15
KOG4413	524	consensus 26S proteasome regulatory complex, subun	98.13
KOG4413	524	consensus 26S proteasome regulatory complex, subun	98.13
KOG1059	877	consensus Vesicle coat complex AP-3, delta subunit	98.13
KOG0213	1172	consensus Splicing factor 3b, subunit 1 [RNA proce	98.13
PF05536	543	Neurochondrin: Neurochondrin	98.07
KOG1061	734	consensus Vesicle coat complex AP-1/AP-2/AP-4, bet	98.06
KOG1789	2235	consensus Endocytosis protein RME-8, contains DnaJ	98.06
KOG2259	823	consensus Uncharacterized conserved protein [Funct	98.02
COG5181	975	HSH155 U2 snRNP spliceosome subunit [RNA processin	98.01
KOG1789	2235	consensus Endocytosis protein RME-8, contains DnaJ	98.01
PF13646	88	HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I	97.99
KOG1242	569	consensus Protein containing adaptin N-terminal re	97.99
PF13646	88	HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I	97.98
COG1413	335	FOG: HEAT repeat [Energy production and conversion	97.97
COG5369	743	Uncharacterized conserved protein [Function unknow	97.96
PF12348	228	CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi	97.96
KOG1242	569	consensus Protein containing adaptin N-terminal re	97.91
PF05536	543	Neurochondrin: Neurochondrin	97.9
KOG2734	536	consensus Uncharacterized conserved protein [Funct	97.89
PF13513	55	HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O	97.89
PF04078	262	Rcd1: Cell differentiation family, Rcd1-like ; Int	97.89
COG5181	975	HSH155 U2 snRNP spliceosome subunit [RNA processin	97.87
KOG2973	353	consensus Uncharacterized conserved protein [Funct	97.84
KOG1824	1233	consensus TATA-binding protein-interacting protein	97.84
COG1413	335	FOG: HEAT repeat [Energy production and conversion	97.84
KOG3036	293	consensus Protein involved in cell differentiation	97.83
KOG3036	293	consensus Protein involved in cell differentiation	97.83
PF13513	55	HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O	97.8
PF09759	102	Atx10homo_assoc: Spinocerebellar ataxia type 10 pr	97.8
KOG0567	289	consensus HEAT repeat-containing protein [General	97.79
KOG1060	968	consensus Vesicle coat complex AP-3, beta subunit	97.77
PF10165	446	Ric8: Guanine nucleotide exchange factor synembryn	97.76
TIGR02270	410	conserved hypothetical protein. Members are found	97.76
PF06025	379	DUF913: Domain of Unknown Function (DUF913); Inter	97.74
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	97.74
KOG4151	748	consensus Myosin assembly protein/sexual cycle pro	97.72
PF09759	102	Atx10homo_assoc: Spinocerebellar ataxia type 10 pr	97.68
smart00185	41	ARM Armadillo/beta-catenin-like repeats. Approx. 4	97.61
smart00185	41	ARM Armadillo/beta-catenin-like repeats. Approx. 4	97.61
COG5096	757	Vesicle coat complex, various subunits [Intracellu	97.59
PF08569	335	Mo25: Mo25-like; InterPro: IPR013878 Mo25-like pro	97.51
KOG1991	1010	consensus Nuclear transport receptor RANBP7/RANBP8	97.44
KOG1077	938	consensus Vesicle coat complex AP-2, alpha subunit	97.42
PF11841	160	DUF3361: Domain of unknown function (DUF3361)	97.41
KOG1248	1176	consensus Uncharacterized conserved protein [Funct	97.4
PF04078	262	Rcd1: Cell differentiation family, Rcd1-like ; Int	97.4
PF11841	160	DUF3361: Domain of unknown function (DUF3361)	97.39
COG5240	898	SEC21 Vesicle coat complex COPI, gamma subunit [In	97.37
KOG1058	948	consensus Vesicle coat complex COPI, beta subunit	97.36
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	97.33
KOG0567	289	consensus HEAT repeat-containing protein [General	97.33
PF08569	335	Mo25: Mo25-like; InterPro: IPR013878 Mo25-like pro	97.32
KOG2259	823	consensus Uncharacterized conserved protein [Funct	97.31
KOG2274	1005	consensus Predicted importin 9 [Intracellular traf	97.31
KOG1943	1133	consensus Beta-tubulin folding cofactor D [Posttra	97.24
PF12755	97	Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region	97.2
PF07814	361	WAPL: Wings apart-like protein regulation of heter	97.2
KOG2062	929	consensus 26S proteasome regulatory complex, subun	97.19
PF13764	802	E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4	97.17
PF12717	178	Cnd1: non-SMC mitotic condensation complex subunit	97.13
KOG1060	968	consensus Vesicle coat complex AP-3, beta subunit	97.13
PF05004	309	IFRD: Interferon-related developmental regulator (	97.11
KOG1077	938	consensus Vesicle coat complex AP-2, alpha subunit	97.09
PF12755	97	Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region	97.08
KOG0211	759	consensus Protein phosphatase 2A regulatory subuni	97.07
KOG1061	734	consensus Vesicle coat complex AP-1/AP-2/AP-4, bet	97.07
PF11698	119	V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011	97.04
COG5096	757	Vesicle coat complex, various subunits [Intracellu	97.03
KOG0915	1702	consensus Uncharacterized conserved protein [Funct	97.03
KOG0211	759	consensus Protein phosphatase 2A regulatory subuni	97.01
PF05004	309	IFRD: Interferon-related developmental regulator (	96.98
KOG1967	1030	consensus DNA repair/transcription protein Mms19 [	96.9
PF11698	119	V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011	96.89
KOG0915	1702	consensus Uncharacterized conserved protein [Funct	96.87
PF08045	257	CDC14: Cell division control protein 14, SIN compo	96.86
PF12717	178	Cnd1: non-SMC mitotic condensation complex subunit	96.84
PF12460	415	MMS19_C: RNAPII transcription regulator C-terminal	96.84
KOG4464	532	consensus Signaling protein RIC-8/synembryn (regul	96.84
KOG4535	728	consensus HEAT and armadillo repeat-containing pro	96.83
PF04063	192	DUF383: Domain of unknown function (DUF383); Inter	96.82
KOG4653	982	consensus Uncharacterized conserved protein [Funct	96.81
KOG4653	982	consensus Uncharacterized conserved protein [Funct	96.71
PF02985	31	HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re	96.69
KOG0414	1251	consensus Chromosome condensation complex Condensi	96.66
KOG2274	1005	consensus Predicted importin 9 [Intracellular traf	96.64
KOG1078	865	consensus Vesicle coat complex COPI, gamma subunit	96.6
COG5240	898	SEC21 Vesicle coat complex COPI, gamma subunit [In	96.47
KOG1967	1030	consensus DNA repair/transcription protein Mms19 [	96.43
PF12719	298	Cnd3: Nuclear condensing complex subunits, C-term	96.38
PF11701	157	UNC45-central: Myosin-binding striated muscle asse	96.37
PF06025	379	DUF913: Domain of Unknown Function (DUF913); Inter	96.34
PF12719	298	Cnd3: Nuclear condensing complex subunits, C-term	96.34
KOG1248	1176	consensus Uncharacterized conserved protein [Funct	96.33
PF08045	257	CDC14: Cell division control protein 14, SIN compo	96.33
KOG4151	748	consensus Myosin assembly protein/sexual cycle pro	96.32
PF04063	192	DUF383: Domain of unknown function (DUF383); Inter	96.3
KOG2956	516	consensus CLIP-associating protein [General functi	96.28
PF02985	31	HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re	96.22
PF11701	157	UNC45-central: Myosin-binding striated muscle asse	96.18
KOG2062	929	consensus 26S proteasome regulatory complex, subun	96.09
PF14668	73	RICTOR_V: Rapamycin-insensitive companion of mTOR,	96.05
KOG1943	1133	consensus Beta-tubulin folding cofactor D [Posttra	95.96
KOG0414	1251	consensus Chromosome condensation complex Condensi	95.95
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	95.92
PF12460	415	MMS19_C: RNAPII transcription regulator C-terminal	95.92
KOG2999	713	consensus Regulator of Rac1, required for phagocyt	95.83
KOG4535	728	consensus HEAT and armadillo repeat-containing pro	95.53
KOG2032	533	consensus Uncharacterized conserved protein [Funct	95.46
PRK14707	2710	hypothetical protein; Provisional	95.39
PF05918	556	API5: Apoptosis inhibitory protein 5 (API5); Inter	95.38
PF07814	361	WAPL: Wings apart-like protein regulation of heter	95.37
PF05918	556	API5: Apoptosis inhibitory protein 5 (API5); Inter	95.35
KOG2956	516	consensus CLIP-associating protein [General functi	95.26
KOG2032	533	consensus Uncharacterized conserved protein [Funct	95.2
PF10363	92	DUF2435: Protein of unknown function (DUF2435)	95.14
PF12530	234	DUF3730: Protein of unknown function (DUF3730) ; I	95.12
PRK14707	2710	hypothetical protein; Provisional	95.1
PF08506	370	Cse1: Cse1; InterPro: IPR013713 The exchange of ma	95.09
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	95.08
COG5209	315	RCD1 Uncharacterized protein involved in cell diff	95.07
PF14668	73	RICTOR_V: Rapamycin-insensitive companion of mTOR,	95.06
PF13764	802	E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4	95.05
COG5209	315	RCD1 Uncharacterized protein involved in cell diff	95.01
KOG1820	815	consensus Microtubule-associated protein [Cytoskel	95.0
KOG1991	1010	consensus Nuclear transport receptor RANBP7/RANBP8	94.69
COG5116	926	RPN2 26S proteasome regulatory complex component [	94.66
KOG2999	713	consensus Regulator of Rac1, required for phagocyt	94.58
KOG1058	948	consensus Vesicle coat complex COPI, beta subunit	94.56
KOG1020	1692	consensus Sister chromatid cohesion protein SCC2/N	94.55
KOG1820	815	consensus Microtubule-associated protein [Cytoskel	94.52
KOG2933	334	consensus Uncharacterized conserved protein [Funct	94.34
KOG2025	892	consensus Chromosome condensation complex Condensi	94.33
KOG1078	865	consensus Vesicle coat complex COPI, gamma subunit	94.26
PF06371	187	Drf_GBD: Diaphanous GTPase-binding Domain; InterPr	94.08
PF11865	160	DUF3385: Domain of unknown function (DUF3385); Int	93.9
PF11707	330	Npa1: Ribosome 60S biogenesis N-terminal; InterPro	93.72
KOG1020	1692	consensus Sister chromatid cohesion protein SCC2/N	93.57
PF06371	187	Drf_GBD: Diaphanous GTPase-binding Domain; InterPr	93.56
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	93.09
PF13251	182	DUF4042: Domain of unknown function (DUF4042)	93.07
KOG1243	690	consensus Protein kinase [General function predict	93.02
COG5218	885	YCG1 Chromosome condensation complex Condensin, su	93.01
PF10363	92	DUF2435: Protein of unknown function (DUF2435)	93.0
COG5098	1128	Chromosome condensation complex Condensin, subunit	92.97
PF11864	464	DUF3384: Domain of unknown function (DUF3384); Int	92.87
PF08324	268	PUL: PUL domain; InterPro: IPR013535 The PUL (afte	92.77
KOG2137	700	consensus Protein kinase [Signal transduction mech	92.75
PF08324	268	PUL: PUL domain; InterPro: IPR013535 The PUL (afte	92.71
PF08167	165	RIX1: rRNA processing/ribosome biogenesis	92.49
COG5218	885	YCG1 Chromosome condensation complex Condensin, su	92.34
KOG1243	690	consensus Protein kinase [General function predict	92.3
COG5116	926	RPN2 26S proteasome regulatory complex component [	92.25
PF01347	618	Vitellogenin_N: Lipoprotein amino terminal region;	92.17
KOG1566	342	consensus Conserved protein Mo25 [Function unknown	92.15
KOG2137	700	consensus Protein kinase [Signal transduction mech	91.68
KOG1788	2799	consensus Uncharacterized conserved protein [Funct	91.65
PF12031	257	DUF3518: Domain of unknown function (DUF3518); Int	91.6
PF11865	160	DUF3385: Domain of unknown function (DUF3385); Int	91.33
KOG2611	698	consensus Neurochondrin/leucine-rich protein (Neur	90.93
KOG1566	342	consensus Conserved protein Mo25 [Function unknown	90.88
PF13251	182	DUF4042: Domain of unknown function (DUF4042)	90.7
KOG2611	698	consensus Neurochondrin/leucine-rich protein (Neur	90.51
COG5656	970	SXM1 Importin, protein involved in nuclear import	90.33
PF12031	257	DUF3518: Domain of unknown function (DUF3518); Int	89.96
KOG2933	334	consensus Uncharacterized conserved protein [Funct	89.61
COG5098	1128	Chromosome condensation complex Condensin, subunit	89.6
PF01347	618	Vitellogenin_N: Lipoprotein amino terminal region;	89.49
smart00638	574	LPD_N Lipoprotein N-terminal Domain.	89.38
KOG1788	2799	consensus Uncharacterized conserved protein [Funct	89.13
smart00638	574	LPD_N Lipoprotein N-terminal Domain.	88.85
PF12530	234	DUF3730: Protein of unknown function (DUF3730) ; I	88.8
PF12231	372	Rif1_N: Rap1-interacting factor 1 N terminal; Inte	88.36
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	87.8
KOG0413	1529	consensus Uncharacterized conserved protein relate	87.04
PF11229	589	DUF3028: Protein of unknown function (DUF3028); In	86.82
PF08167	165	RIX1: rRNA processing/ribosome biogenesis	86.15
PF08506	370	Cse1: Cse1; InterPro: IPR013713 The exchange of ma	86.1
PLN03076	1780	ARF guanine nucleotide exchange factor (ARF-GEF);	85.71
KOG2025	892	consensus Chromosome condensation complex Condensi	85.0
PF14726	98	RTTN_N: Rotatin, an armadillo repeat protein, cent	84.59
KOG1949	1005	consensus Uncharacterized conserved protein [Funct	84.37
PF10521	282	DUF2454: Protein of unknown function (DUF2454); In	83.64
PF14500	262	MMS19_N: Dos2-interacting transcription regulator	83.59
PF04869	312	Uso1_p115_head: Uso1 / p115 like vesicle tethering	83.57
PF10274	183	ParcG: Parkin co-regulated protein; InterPro: IPR0	83.47
cd03561	133	VHS VHS domain family; The VHS domain is present i	83.45
COG5656	970	SXM1 Importin, protein involved in nuclear import	83.44
cd03569	142	VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p s	82.98
cd03561	133	VHS VHS domain family; The VHS domain is present i	82.51
cd03567	139	VHS_GGA VHS domain family, GGA subfamily; GGA (Gol	81.73
KOG1949	1005	consensus Uncharacterized conserved protein [Funct	81.36
KOG4464	532	consensus Signaling protein RIC-8/synembryn (regul	81.04
cd03568	144	VHS_STAM VHS domain family, STAM subfamily; member	80.95
cd03569	142	VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p s	80.56
cd03568	144	VHS_STAM VHS domain family, STAM subfamily; member	80.16
KOG2549	576	consensus Transcription initiation factor TFIID, s	80.07

>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1.1e-39  Score=297.83  Aligned_cols=299  Identities=24%  Similarity=0.358  Sum_probs=267.6

Q ss_pred             hhhhHHHHhhhhhcchhhhHHHHHHHHHHHHHHcCC-hhHHHHHHhCCChHHHHhcccCCCCcccccCCCcchHHHHHHH
Q 015851           58 EVSAQVNVLNTTFSWLEADRAAAKRATHVLAELAKN-EEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGS  136 (399)
Q Consensus        58 ~~~~~~~~L~~~l~~~~~~~~~~~~a~~~L~~l~~~-~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~~~~~a  136 (399)
                      ...+.+|.++.++. .++++.+|.+|+|+|.|++++ .+....+++.|++|.|+.++.+++.            +++++|
T Consensus       106 i~~G~v~~lV~~l~-~~~~~~lq~eAAWaLTnIAsgtse~T~~vv~agavp~fi~Ll~s~~~------------~v~eQa  172 (514)
T KOG0166|consen  106 IQSGVVPRLVEFLS-RDDNPTLQFEAAWALTNIASGTSEQTKVVVDAGAVPIFIQLLSSPSA------------DVREQA  172 (514)
T ss_pred             HHcCcHHHHHHHHc-cCCChhHHHHHHHHHHHHhcCchhhccccccCCchHHHHHHhcCCcH------------HHHHHH
Confidence            34467777777774 245678899999999999996 8888899999999999999999887            789999


Q ss_pred             HHHHHHhc-CChhhHHHHHhcCcHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHh
Q 015851          137 AFALGLLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVEL  215 (399)
Q Consensus       137 ~~~L~~l~-~~~~~~~~i~~~~~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~l  215 (399)
                      +|+|+|++ +++.+|..+...|++++|+.++......       .+.+.+.|+|.|||.+.......-.....+|.|..+
T Consensus       173 vWALgNIagds~~~Rd~vl~~g~l~pLl~~l~~~~~~-------~~lRn~tW~LsNlcrgk~P~P~~~~v~~iLp~L~~l  245 (514)
T KOG0166|consen  173 VWALGNIAGDSPDCRDYVLSCGALDPLLRLLNKSDKL-------SMLRNATWTLSNLCRGKNPSPPFDVVAPILPALLRL  245 (514)
T ss_pred             HHHHhccccCChHHHHHHHhhcchHHHHHHhccccch-------HHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHHH
Confidence            99999999 9999999999999999999999987653       788999999999997653322323345789999999


Q ss_pred             hcCCCHHHHHHHHHHHHHhhcCChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHHCCCcHH
Q 015851          216 LEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQP  295 (399)
Q Consensus       216 l~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~  295 (399)
                      +.+.|+++...|+|++++|+.+.++..+.+++.|++|.|+.+|.+.+..++.-|+++++|++.+++..++.+++.|+++.
T Consensus       246 l~~~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIvtG~d~QTq~vi~~~~L~~  325 (514)
T KOG0166|consen  246 LHSTDEEVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNIVTGSDEQTQVVINSGALPV  325 (514)
T ss_pred             HhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHHHcCCCcccccHHHhhccceeeccHHHHHHHHhcChHHH
Confidence            99999999999999999999988999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhc-CCChHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhccCCCC-------
Q 015851          296 VIGLLS-SCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQVITVS-------  367 (399)
Q Consensus       296 L~~lL~-~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~-------  367 (399)
                      |..++. ++...++++|||+|+|++++++++.+.+++.|++|.|+.++++.+.+++++|+|+++|++.....+       
T Consensus       326 l~~ll~~s~~~~ikkEAcW~iSNItAG~~~qiqaVida~l~p~Li~~l~~~ef~~rKEAawaIsN~ts~g~~~qi~yLv~  405 (514)
T KOG0166|consen  326 LSNLLSSSPKESIKKEACWTISNITAGNQEQIQAVIDANLIPVLINLLQTAEFDIRKEAAWAISNLTSSGTPEQIKYLVE  405 (514)
T ss_pred             HHHHhccCcchhHHHHHHHHHHHhhcCCHHHHHHHHHcccHHHHHHHHhccchHHHHHHHHHHHhhcccCCHHHHHHHHH
Confidence            999998 556679999999999999999999999999999999999999999999999999999999988863       


Q ss_pred             --cchhHHHHH
Q 015851          368 --VLPAILIFI  376 (399)
Q Consensus       368 --~~~~~~~~~  376 (399)
                        ++++++.++
T Consensus       406 ~giI~plcdlL  416 (514)
T KOG0166|consen  406 QGIIKPLCDLL  416 (514)
T ss_pred             cCCchhhhhcc
Confidence              566655555

>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]

Probab=100.00  E-value=3.8e-37  Score=261.68  Aligned_cols=315  Identities=20%  Similarity=0.298  Sum_probs=266.0

Q ss_pred             hhhhhHHHHhhhhhcchhhhHHHHHHHHHHHHHHcCC-hhHHHHHHhCCChHHHHhcccCCCCcccccCCCcchHHHHHH
Q 015851           57 SEVSAQVNVLNTTFSWLEADRAAAKRATHVLAELAKN-EEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKG  135 (399)
Q Consensus        57 ~~~~~~~~~L~~~l~~~~~~~~~~~~a~~~L~~l~~~-~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~~~~~  135 (399)
                      +.++++++++.+.     +....+.+|.|+|.|++++ ....+-+++.|++|.++++|.+.+.            +++++
T Consensus       114 GvVpRfvefm~~~-----q~~mlqfEAaWalTNiaSGtt~QTkvVvd~~AVPlfiqlL~s~~~------------~V~eQ  176 (526)
T COG5064         114 GVVPRFVEFMDEI-----QRDMLQFEAAWALTNIASGTTQQTKVVVDAGAVPLFIQLLSSTED------------DVREQ  176 (526)
T ss_pred             cccHHHHHHHHhc-----chhHHHHHHHHHHhhhccCcccceEEEEeCCchHHHHHHHcCchH------------HHHHH
Confidence            4556666655432     2345788999999999997 5555677799999999999998877            89999


Q ss_pred             HHHHHHHhc-CChhhHHHHHhcCcHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHH
Q 015851          136 SAFALGLLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVE  214 (399)
Q Consensus       136 a~~~L~~l~-~~~~~~~~i~~~~~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~  214 (399)
                      ++|+|+|++ +++.+|+.+.+.|++.+++.++.+.....      .+.+.+.|+|.|||.....-..--.....+|.|.+
T Consensus       177 avWALGNiAGDS~~~RD~vL~~galeplL~ll~ss~~~i------smlRn~TWtLSNlcRGknP~P~w~~isqalpiL~K  250 (526)
T COG5064         177 AVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSAIHI------SMLRNATWTLSNLCRGKNPPPDWSNISQALPILAK  250 (526)
T ss_pred             HHHHhccccCCchhHHHHHHhcCchHHHHHHHHhccchH------HHHHHhHHHHHHhhCCCCCCCchHHHHHHHHHHHH
Confidence            999999999 88999999999999999999998654422      78899999999999743221111222456899999


Q ss_pred             hhcCCCHHHHHHHHHHHHHhhcCChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHHCCCcH
Q 015851          215 LLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQ  294 (399)
Q Consensus       215 ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~  294 (399)
                      ++.+.++++...|+|++..|+.+..+....+++.|+.+.|+.+|.+++..++.-|++.++|+..+++...+.+++.|+++
T Consensus       251 Liys~D~evlvDA~WAiSYlsDg~~E~i~avld~g~~~RLvElLs~~sa~iqtPalR~vGNIVTG~D~QTqviI~~G~L~  330 (526)
T COG5064         251 LIYSRDPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSHESAKIQTPALRSVGNIVTGSDDQTQVIINCGALK  330 (526)
T ss_pred             HHhhcCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHhcCccccccCHHHHhhcCeeecCccceehheecccHH
Confidence            99999999999999999999998888889999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhcCCChHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhccCCC--------
Q 015851          295 PVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQVITV--------  366 (399)
Q Consensus       295 ~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~--------  366 (399)
                      .+..+|+++...++++|||+|+|++.++.++.+.+++.+++|+|+.+|.+.+..+++.|+|++.|...+..+        
T Consensus       331 a~~~lLs~~ke~irKEaCWTiSNITAGnteqiqavid~nliPpLi~lls~ae~k~kKEACWAisNatsgg~~~PD~iryL  410 (526)
T COG5064         331 AFRSLLSSPKENIRKEACWTISNITAGNTEQIQAVIDANLIPPLIHLLSSAEYKIKKEACWAISNATSGGLNRPDIIRYL  410 (526)
T ss_pred             HHHHHhcChhhhhhhhhheeecccccCCHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhhhccccCCchHHHHH
Confidence            999999999999999999999999999999999999999999999999999999999999999999988775        


Q ss_pred             ---CcchhHHHHHhhccc-cHHHHHHHHhhhH
Q 015851          367 ---SVLPAILIFIIINEC-QLEVLAFVLSEMV  394 (399)
Q Consensus       367 ---~~~~~~~~~~~~~~~-~~~~~~~~l~~~~  394 (399)
                         +++.++..++-..+. -+++..-++..++
T Consensus       411 v~qG~IkpLc~~L~~~dNkiiev~LD~~eniL  442 (526)
T COG5064         411 VSQGFIKPLCDLLDVVDNKIIEVALDAIENIL  442 (526)
T ss_pred             HHccchhHHHHHHhccCccchhhhHHHHHHHH
Confidence               355665555544444 3355444444443

>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=2.4e-33  Score=256.34  Aligned_cols=287  Identities=21%  Similarity=0.315  Sum_probs=252.3

Q ss_pred             hhHHHHhhhhhcchhhhHHHHHHHHHHHHHHcCC-hhHHHHHHhCCChHHHHhcccCCCCcccccCCCcchHHHHHHHHH
Q 015851           60 SAQVNVLNTTFSWLEADRAAAKRATHVLAELAKN-EEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAF  138 (399)
Q Consensus        60 ~~~~~~L~~~l~~~~~~~~~~~~a~~~L~~l~~~-~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~~~~~a~~  138 (399)
                      .+.+|.+..++  .+.+..+++.|+|+|+|++.+ +..|+.+++.|++++|+.++..+...           ...+++.|
T Consensus       151 agavp~fi~Ll--~s~~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l~~~~~~-----------~~lRn~tW  217 (514)
T KOG0166|consen  151 AGAVPIFIQLL--SSPSADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLLNKSDKL-----------SMLRNATW  217 (514)
T ss_pred             CCchHHHHHHh--cCCcHHHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHHhccccch-----------HHHHHHHH
Confidence            34666666666  455677899999999999997 99999999999999999999877652           57889999


Q ss_pred             HHHHhcCChh-hHHHHHhcCcHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhhc
Q 015851          139 ALGLLAVKPE-HQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLE  217 (399)
Q Consensus       139 ~L~~l~~~~~-~~~~i~~~~~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~  217 (399)
                      +|.|||.+.. ....-.-..++|.|..++.+.+.        ++...+||+|.+|+.+....-.++.+.|++|.|+.+|.
T Consensus       218 ~LsNlcrgk~P~P~~~~v~~iLp~L~~ll~~~D~--------~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~  289 (514)
T KOG0166|consen  218 TLSNLCRGKNPSPPFDVVAPILPALLRLLHSTDE--------EVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLLG  289 (514)
T ss_pred             HHHHHHcCCCCCCcHHHHHHHHHHHHHHHhcCCH--------HHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHHHc
Confidence            9999994331 11111223489999999998877        89999999999999777777777889999999999999


Q ss_pred             CCCHHHHHHHHHHHHHhhcCChhhHHHHHhcCCHHHHHHhhc-CCCHHHHHHHHHHHHHhhcCChhHHHHHHHCCCcHHH
Q 015851          218 FTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLR-SEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPV  296 (399)
Q Consensus       218 ~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~L~~ll~-~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L  296 (399)
                      +.++.++..|+++++|++.+++...+.++..|++|.|..++. ++...++.+|||+++||+.++...++.++++|++|.|
T Consensus       290 ~~~~~v~~PaLRaiGNIvtG~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iSNItAG~~~qiqaVida~l~p~L  369 (514)
T KOG0166|consen  290 HSSPKVVTPALRAIGNIVTGSDEQTQVVINSGALPVLSNLLSSSPKESIKKEACWTISNITAGNQEQIQAVIDANLIPVL  369 (514)
T ss_pred             CCCcccccHHHhhccceeeccHHHHHHHHhcChHHHHHHHhccCcchhHHHHHHHHHHHhhcCCHHHHHHHHHcccHHHH
Confidence            999999999999999999999999999999999999999999 5566799999999999999999999999999999999


Q ss_pred             HHhhcCCChHHHHHHHHHHHHhhccC-hhhHHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhccCCCC
Q 015851          297 IGLLSSCCSESQREAALLLGQFAATD-SDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQVITVS  367 (399)
Q Consensus       297 ~~lL~~~~~~v~~~a~~~L~~l~~~~-~~~~~~l~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~  367 (399)
                      +.+|++.+.+++++|+|+|+|++.++ ++....+++.|++++|+.+|...|..+...+..+|.++-...+..
T Consensus       370 i~~l~~~ef~~rKEAawaIsN~ts~g~~~qi~yLv~~giI~plcdlL~~~D~~ii~v~Ld~l~nil~~~e~~  441 (514)
T KOG0166|consen  370 INLLQTAEFDIRKEAAWAISNLTSSGTPEQIKYLVEQGIIKPLCDLLTCPDVKIILVALDGLENILKVGEAE  441 (514)
T ss_pred             HHHHhccchHHHHHHHHHHHhhcccCCHHHHHHHHHcCCchhhhhcccCCChHHHHHHHHHHHHHHHHHHHh
Confidence            99999999999999999999999874 577889999999999999999899999999999999998766643

>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]

Probab=100.00  E-value=1.8e-33  Score=239.27  Aligned_cols=285  Identities=23%  Similarity=0.296  Sum_probs=248.8

Q ss_pred             hhhHHHHhhhhhcchhhhHHHHHHHHHHHHHHcCC-hhHHHHHHhCCChHHHHhcccCCCCcccccCCCcchHHHHHHHH
Q 015851           59 VSAQVNVLNTTFSWLEADRAAAKRATHVLAELAKN-EEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSA  137 (399)
Q Consensus        59 ~~~~~~~L~~~l~~~~~~~~~~~~a~~~L~~l~~~-~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~~~~~a~  137 (399)
                      -.+.+|.+..++.  +.+..++++++|+|+|+++| +..|+.+.+.|++.+++.++.++...+          .+.+++.
T Consensus       155 d~~AVPlfiqlL~--s~~~~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~ss~~~i----------smlRn~T  222 (526)
T COG5064         155 DAGAVPLFIQLLS--STEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSAIHI----------SMLRNAT  222 (526)
T ss_pred             eCCchHHHHHHHc--CchHHHHHHHHHHhccccCCchhHHHHHHhcCchHHHHHHHHhccchH----------HHHHHhH
Confidence            3445666666663  33456899999999999997 889999999999999999998765532          5778999


Q ss_pred             HHHHHhc--CChhh-HHHHHhcCcHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHH
Q 015851          138 FALGLLA--VKPEH-QQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVE  214 (399)
Q Consensus       138 ~~L~~l~--~~~~~-~~~i~~~~~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~  214 (399)
                      |+|.|||  .+|.. ...+..  .+|.|.+++...+.        ++...++|++.+|+....+.-..+.+.|..+.|++
T Consensus       223 WtLSNlcRGknP~P~w~~isq--alpiL~KLiys~D~--------evlvDA~WAiSYlsDg~~E~i~avld~g~~~RLvE  292 (526)
T COG5064         223 WTLSNLCRGKNPPPDWSNISQ--ALPILAKLIYSRDP--------EVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVE  292 (526)
T ss_pred             HHHHHhhCCCCCCCchHHHHH--HHHHHHHHHhhcCH--------HHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHH
Confidence            9999999  44433 233333  68999999988776        89999999999999766666667888899999999


Q ss_pred             hhcCCCHHHHHHHHHHHHHhhcCChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHHCCCcH
Q 015851          215 LLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQ  294 (399)
Q Consensus       215 ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~  294 (399)
                      +|.+++..++..|++.++|+..+++...+.++..|+++.+-.+|+++.+.++.+|||+++|++.++.+..+.+++.+.+|
T Consensus       293 lLs~~sa~iqtPalR~vGNIVTG~D~QTqviI~~G~L~a~~~lLs~~ke~irKEaCWTiSNITAGnteqiqavid~nliP  372 (526)
T COG5064         293 LLSHESAKIQTPALRSVGNIVTGSDDQTQVIINCGALKAFRSLLSSPKENIRKEACWTISNITAGNTEQIQAVIDANLIP  372 (526)
T ss_pred             HhcCccccccCHHHHhhcCeeecCccceehheecccHHHHHHHhcChhhhhhhhhheeecccccCCHHHHHHHHhcccch
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhcCCChHHHHHHHHHHHHhhccC---hhhHHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhccCC
Q 015851          295 PVIGLLSSCCSESQREAALLLGQFAATD---SDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQVIT  365 (399)
Q Consensus       295 ~L~~lL~~~~~~v~~~a~~~L~~l~~~~---~~~~~~l~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~  365 (399)
                      +|+++|.+.+..++++|||+++|.++++   |+..+.+++.|++++|+.+|.-.+..+.+.+..++.|+-+-..
T Consensus       373 pLi~lls~ae~k~kKEACWAisNatsgg~~~PD~iryLv~qG~IkpLc~~L~~~dNkiiev~LD~~eniLk~Ge  446 (526)
T COG5064         373 PLIHLLSSAEYKIKKEACWAISNATSGGLNRPDIIRYLVSQGFIKPLCDLLDVVDNKIIEVALDAIENILKVGE  446 (526)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhccccCCchHHHHHHHccchhHHHHHHhccCccchhhhHHHHHHHHhhhh
Confidence            9999999999999999999999999764   6788999999999999999998788888888999998886554

>PLN03200 cellulose synthase-interactive protein; Provisional

Probab=99.98  E-value=1.2e-29  Score=264.15  Aligned_cols=309  Identities=21%  Similarity=0.260  Sum_probs=253.5

Q ss_pred             hhHHHHhhhhhcchhhhHHHHHHHHHHHHHHcCC-hhHHHHHHhCCChHHHHhcccCCCCcccccCCCcchHHHHHHHHH
Q 015851           60 SAQVNVLNTTFSWLEADRAAAKRATHVLAELAKN-EEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAF  138 (399)
Q Consensus        60 ~~~~~~L~~~l~~~~~~~~~~~~a~~~L~~l~~~-~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~~~~~a~~  138 (399)
                      .+.++.|..+++  +.++..|..|+++|.+++.+ ++.+..+++.|+||.|+++|.+.++           +.+|++|+|
T Consensus       188 aGaVp~LV~LLs--S~d~~lQ~eAa~aLa~Lass~ee~~~aVIeaGaVP~LV~LL~sg~~-----------~~VRE~AA~  254 (2102)
T PLN03200        188 AGGVDILVKLLS--SGNSDAQANAASLLARLMMAFESSISKVLDAGAVKQLLKLLGQGNE-----------VSVRAEAAG  254 (2102)
T ss_pred             cCCHHHHHHHHc--CCCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHccCCC-----------hHHHHHHHH
Confidence            457777777774  45678899999999888875 8899999999999999999976433           178999999


Q ss_pred             HHHHhc-CChhhHHHHHhcCcHHHHHHHHhccccCcc-ccccHHHHHHHHHHHHHHhhcCch-----------h------
Q 015851          139 ALGLLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNC-SRAVNSVIRRAADAITNLAHENSS-----------I------  199 (399)
Q Consensus       139 ~L~~l~-~~~~~~~~i~~~~~i~~L~~~L~~~~~~~~-~~~~~~~~~~a~~~L~~l~~~~~~-----------~------  199 (399)
                      +|.+|+ .+++++..+++.|+++.|++++.....+.. ......+++++.|+|.|+|.+.+.           .      
T Consensus       255 AL~nLAs~s~e~r~~Iv~aGgIp~LI~lL~sp~~e~~~~~~~~~Lqe~AvwALsNIcgg~~~ll~~L~~ll~s~rd~~~~  334 (2102)
T PLN03200        255 ALEALSSQSKEAKQAIADAGGIPALINATVAPSKEFMQGEFAQALQENAMGALANICGGMSALILYLGELSESPRSPAPI  334 (2102)
T ss_pred             HHHHHhcCCHHHHHHHHHCCCHHHHHHHHhCcchhhhccccchHHHHHHHHHHHHHhCCchhhHHHHHHhhcccchHHHH
Confidence            999999 789999999999999999999985442110 000015788899999998853111           0      


Q ss_pred             ---------------------------------------------H-----------------HHHHhcCChHHHHHhhc
Q 015851          200 ---------------------------------------------K-----------------TRVRMEGGIPPLVELLE  217 (399)
Q Consensus       200 ---------------------------------------------~-----------------~~~~~~~~i~~L~~ll~  217 (399)
                                                                   +                 ..+...++++.|+.++.
T Consensus       335 ada~gALayll~l~d~~~~~~~~i~~~~v~~~LV~Llr~k~p~~vqe~V~eALasl~gN~~l~~~L~~~daik~LV~LL~  414 (2102)
T PLN03200        335 ADTLGALAYALMVFDSSAESTRAFDPTVIEQILVKLLKPRDTKLVQERIIEALASLYGNAYLSRKLNHAEAKKVLVGLIT  414 (2102)
T ss_pred             HHHHhhHHHHHHhcCCchhhhhhccccccHHHHHHHhCCCCCchhHHHHHHHHHHhcCChHHHHHHHhccchhhhhhhhc
Confidence                                                         0                 00112234455566666


Q ss_pred             CCCHHHHHHHHHHHHHhhcCChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHHCCCcHHHH
Q 015851          218 FTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVI  297 (399)
Q Consensus       218 ~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~  297 (399)
                      ..+.+++..++++|++|+.++.+....+.+.|++|.|+.+|.++++.++..|+++|++++.++++.+..++++|+++.|+
T Consensus       415 ~~~~evQ~~Av~aL~~L~~~~~e~~~aIi~~ggIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~ndenr~aIieaGaIP~LV  494 (2102)
T PLN03200        415 MATADVQEELIRALSSLCCGKGGLWEALGGREGVQLLISLLGLSSEQQQEYAVALLAILTDEVDESKWAITAAGGIPPLV  494 (2102)
T ss_pred             cCCHHHHHHHHHHHHHHhCCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHH
Confidence            66778999999999999988888999999999999999999999999999999999999988888889999999999999


Q ss_pred             HhhcCCChHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhccCCCCcchhHHHHHh
Q 015851          298 GLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQVITVSVLPAILIFII  377 (399)
Q Consensus       298 ~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~  377 (399)
                      ++|.+++..++++|+|+|+|++..+++.+..+.+.|++++|+++|.++++++++.|+++|.++....++..++.++.++.
T Consensus       495 ~LL~s~~~~iqeeAawAL~NLa~~~~qir~iV~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi~~~d~~~I~~Lv~LLl  574 (2102)
T PLN03200        495 QLLETGSQKAKEDSATVLWNLCCHSEDIRACVESAGAVPALLWLLKNGGPKGQEIAAKTLTKLVRTADAATISQLTALLL  574 (2102)
T ss_pred             HHHcCCCHHHHHHHHHHHHHHhCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhccchhHHHHHHHHhc
Confidence            99999999999999999999997655566666688999999999999999999999999999999888877777766654


Q ss_pred             hccc
Q 015851          378 INEC  381 (399)
Q Consensus       378 ~~~~  381 (399)
                      .++.
T Consensus       575 sdd~  578 (2102)
T PLN03200        575 GDLP  578 (2102)
T ss_pred             CCCh
Confidence            4443

>PLN03200 cellulose synthase-interactive protein; Provisional

Probab=99.97  E-value=8.3e-29  Score=258.10  Aligned_cols=293  Identities=21%  Similarity=0.268  Sum_probs=252.4

Q ss_pred             HHHhhhhhcchhhhHHHHHHHHHHHHHHcCC-hhHHHHHHhCCChHHHHhcccCCCCcccccCCCcchHHHHHHHHHHHH
Q 015851           63 VNVLNTTFSWLEADRAAAKRATHVLAELAKN-EEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALG  141 (399)
Q Consensus        63 ~~~L~~~l~~~~~~~~~~~~a~~~L~~l~~~-~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~~~~~a~~~L~  141 (399)
                      ++.|.+++.  ..+.+.|..++|+|.+++.+ .+.+..+.+.|+++.|+++|.+++.            .+++.|+++|+
T Consensus       406 ik~LV~LL~--~~~~evQ~~Av~aL~~L~~~~~e~~~aIi~~ggIp~LV~LL~s~s~------------~iQ~~A~~~L~  471 (2102)
T PLN03200        406 KKVLVGLIT--MATADVQEELIRALSSLCCGKGGLWEALGGREGVQLLISLLGLSSE------------QQQEYAVALLA  471 (2102)
T ss_pred             hhhhhhhhc--cCCHHHHHHHHHHHHHHhCCCHHHHHHHHHcCcHHHHHHHHcCCCH------------HHHHHHHHHHH
Confidence            334444442  34567899999999999975 8889999999999999999998765            78999999999


Q ss_pred             Hhc-CChhhHHHHHhcCcHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhhcCCC
Q 015851          142 LLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTD  220 (399)
Q Consensus       142 ~l~-~~~~~~~~i~~~~~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~  220 (399)
                      +++ .+++.+..+++.|++|.|+++|.+++.        .+++.++|+|+|++.+.+..+..+...|+++.|+++|++++
T Consensus       472 nLa~~ndenr~aIieaGaIP~LV~LL~s~~~--------~iqeeAawAL~NLa~~~~qir~iV~~aGAIppLV~LL~sgd  543 (2102)
T PLN03200        472 ILTDEVDESKWAITAAGGIPPLVQLLETGSQ--------KAKEDSATVLWNLCCHSEDIRACVESAGAVPALLWLLKNGG  543 (2102)
T ss_pred             HHHcCCHHHHHHHHHCCCHHHHHHHHcCCCH--------HHHHHHHHHHHHHhCCcHHHHHHHHHCCCHHHHHHHHhCCC
Confidence            999 788899999999999999999997765        89999999999999877777777778899999999999999


Q ss_pred             HHHHHHHHHHHHHhhcCChhh-------------------------------------HHHHHhcCCHHHHHHhhcCCCH
Q 015851          221 TKVQRAAAGALRTLAFKNDEN-------------------------------------KNQIVECNALPTLILMLRSEDS  263 (399)
Q Consensus       221 ~~v~~~a~~~L~~L~~~~~~~-------------------------------------~~~~~~~~~~~~L~~ll~~~~~  263 (399)
                      ++++..|+++|.+|+.+.+..                                     .......|+++.|+.+++++++
T Consensus       544 ~~~q~~Aa~AL~nLi~~~d~~~I~~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~sgs~  623 (2102)
T PLN03200        544 PKGQEIAAKTLTKLVRTADAATISQLTALLLGDLPESKVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQLLSSSKE  623 (2102)
T ss_pred             HHHHHHHHHHHHHHHhccchhHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHHHHcCCCH
Confidence            999999999999996421110                                     0011246899999999999999


Q ss_pred             HHHHHHHHHHHHhhcCChhHHHHHHHCCCcHHHHHhhcCCChHHHHHHHHHHHHhhccCh-hhHHHHHhcCCHHHHHHhh
Q 015851          264 AIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDS-DCKVHIVQRGAVRPLIEML  342 (399)
Q Consensus       264 ~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~-~~~~~l~~~g~v~~L~~ll  342 (399)
                      .+++.|+|+|.+++.++++....++..|++++++.+|++.+.+++++++|+|.|++.... +++..+.+.|++++|++++
T Consensus       624 ~ikk~Aa~iLsnL~a~~~d~~~avv~agaIpPLV~LLss~~~~v~keAA~AL~nL~~~~~~~q~~~~v~~GaV~pL~~LL  703 (2102)
T PLN03200        624 ETQEKAASVLADIFSSRQDLCESLATDEIINPCIKLLTNNTEAVATQSARALAALSRSIKENRKVSYAAEDAIKPLIKLA  703 (2102)
T ss_pred             HHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCChHHHHHHHHHHHHHHhCCCHHHHHHHHHcCCHHHHHHHH
Confidence            999999999999999888888999999999999999999999999999999999996543 4566788999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHhhccCCC-------CcchhHHHHHh
Q 015851          343 QSPDVQLREMSAFALGRLAQVITV-------SVLPAILIFII  377 (399)
Q Consensus       343 ~~~~~~v~~~a~~~L~~l~~~~~~-------~~~~~~~~~~~  377 (399)
                      ++++.+++..|+.+|.|++.+.+.       +.++.+...+.
T Consensus       704 ~~~d~~v~e~Al~ALanLl~~~e~~~ei~~~~~I~~Lv~lLr  745 (2102)
T PLN03200        704 KSSSIEVAEQAVCALANLLSDPEVAAEALAEDIILPLTRVLR  745 (2102)
T ss_pred             hCCChHHHHHHHHHHHHHHcCchHHHHHHhcCcHHHHHHHHH
Confidence            999999999999999999998864       35666555554

>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.96  E-value=2.3e-28  Score=210.07  Aligned_cols=291  Identities=24%  Similarity=0.291  Sum_probs=256.7

Q ss_pred             hHHHhHhhhhhhHHHHhhhhhcchhhhHHHHHHHHHHHHHHcCChhHHHHHHhCCChHHHHhcccCCCCcccccCCCcch
Q 015851           50 DARQALLSEVSAQVNVLNTTFSWLEADRAAAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFE  129 (399)
Q Consensus        50 d~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~  129 (399)
                      |.....++....+.| +.++-  ++.|..+|..++.+|.++....++|..++..|++|.|++++++.+.           
T Consensus       157 d~nk~kiA~sGaL~p-ltrLa--kskdirvqrnatgaLlnmThs~EnRr~LV~aG~lpvLVsll~s~d~-----------  222 (550)
T KOG4224|consen  157 DSNKVKIARSGALEP-LTRLA--KSKDIRVQRNATGALLNMTHSRENRRVLVHAGGLPVLVSLLKSGDL-----------  222 (550)
T ss_pred             ccchhhhhhccchhh-hHhhc--ccchhhHHHHHHHHHHHhhhhhhhhhhhhccCCchhhhhhhccCCh-----------
Confidence            334444444444444 33332  4567779999999999999999999999999999999999999887           


Q ss_pred             HHHHHHHHHHHHHhcCChhhHHHHHhcC--cHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhhcCchhHHHHHhcC
Q 015851          130 HEVEKGSAFALGLLAVKPEHQQLIVDNG--ALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEG  207 (399)
Q Consensus       130 ~~~~~~a~~~L~~l~~~~~~~~~i~~~~--~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~  207 (399)
                       ++|+.++.++++++-+...|..+++.+  .++.|++++.++++        .++..+.-+|.|++.+.... ..+.+.|
T Consensus       223 -dvqyycttaisnIaVd~~~Rk~Laqaep~lv~~Lv~Lmd~~s~--------kvkcqA~lALrnlasdt~Yq-~eiv~ag  292 (550)
T KOG4224|consen  223 -DVQYYCTTAISNIAVDRRARKILAQAEPKLVPALVDLMDDGSD--------KVKCQAGLALRNLASDTEYQ-REIVEAG  292 (550)
T ss_pred             -hHHHHHHHHhhhhhhhHHHHHHHHhcccchHHHHHHHHhCCCh--------HHHHHHHHHHhhhcccchhh-hHHHhcC
Confidence             899999999999999999999999988  99999999999888        89999999999999655554 4588899


Q ss_pred             ChHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhhHHHHHhcCCHHHHHHhhcCC-CHHHHHHHHHHHHHhhcCChhHHHH
Q 015851          208 GIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSE-DSAIHYEAVGVIGNLVHSSPNIKKE  286 (399)
Q Consensus       208 ~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~L~~ll~~~-~~~v~~~a~~~L~~l~~~~~~~~~~  286 (399)
                      .+|.++++++++..........++.|++. +|-+...+.+.|++..|+.+|+.. +++++-+|..+|+|++.++..++..
T Consensus       293 ~lP~lv~Llqs~~~plilasVaCIrnisi-hplNe~lI~dagfl~pLVrlL~~~dnEeiqchAvstLrnLAasse~n~~~  371 (550)
T KOG4224|consen  293 SLPLLVELLQSPMGPLILASVACIRNISI-HPLNEVLIADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASSEHNVSV  371 (550)
T ss_pred             CchHHHHHHhCcchhHHHHHHHHHhhccc-ccCcccceecccchhHHHHHHhcCCchhhhhhHHHHHHHHhhhhhhhhHH
Confidence            99999999999887777788889999998 688888899999999999999975 5569999999999999888888999


Q ss_pred             HHHCCCcHHHHHhhcCCChHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhccCCC
Q 015851          287 VLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQVITV  366 (399)
Q Consensus       287 ~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~  366 (399)
                      +..+|+++.++.++...+.+++.+...++..++- ++..+..+.+.|++|.|+.++.+.+.+++.+|+.+|.|++++-++
T Consensus       372 i~esgAi~kl~eL~lD~pvsvqseisac~a~Lal-~d~~k~~lld~gi~~iLIp~t~s~s~Ev~gNaAaAL~Nlss~v~~  450 (550)
T KOG4224|consen  372 IRESGAIPKLIELLLDGPVSVQSEISACIAQLAL-NDNDKEALLDSGIIPILIPWTGSESEEVRGNAAAALINLSSDVEH  450 (550)
T ss_pred             HhhcCchHHHHHHHhcCChhHHHHHHHHHHHHHh-ccccHHHHhhcCCcceeecccCccchhhcccHHHHHHhhhhhhHH
Confidence            9999999999999999999999999999999984 678889999999999999999999999999999999999987775

>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.96  E-value=5.9e-28  Score=207.52  Aligned_cols=271  Identities=26%  Similarity=0.295  Sum_probs=246.6

Q ss_pred             hhhHHHHHHHHHHHHHHcCChhHHHHHHhCCChHHHHhcccCCCCcccccCCCcchHHHHHHHHHHHHHhcCChhhHHHH
Q 015851           74 EADRAAAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLI  153 (399)
Q Consensus        74 ~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~i  153 (399)
                      .++.++|..+..|+.+++.-.+++..+...|++.++..+-++.+.            .+|+++..+|.+++...++|+.+
T Consensus       137 td~vevqcnaVgCitnLaT~d~nk~kiA~sGaL~pltrLakskdi------------rvqrnatgaLlnmThs~EnRr~L  204 (550)
T KOG4224|consen  137 TDGVEVQCNAVGCITNLATFDSNKVKIARSGALEPLTRLAKSKDI------------RVQRNATGALLNMTHSRENRRVL  204 (550)
T ss_pred             CCCcEEEeeehhhhhhhhccccchhhhhhccchhhhHhhcccchh------------hHHHHHHHHHHHhhhhhhhhhhh
Confidence            345678999999999999988899999999999999997776666            78999999999999999999999


Q ss_pred             HhcCcHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhhcCchhHHHHHhcC--ChHHHHHhhcCCCHHHHHHHHHHH
Q 015851          154 VDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEG--GIPPLVELLEFTDTKVQRAAAGAL  231 (399)
Q Consensus       154 ~~~~~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~--~i~~L~~ll~~~~~~v~~~a~~~L  231 (399)
                      +.+|++|.|+.++++.+.        ++++.++.+++|++ .+...+..+.+.+  .+|.|+.++.+++++++..|..+|
T Consensus       205 V~aG~lpvLVsll~s~d~--------dvqyycttaisnIa-Vd~~~Rk~Laqaep~lv~~Lv~Lmd~~s~kvkcqA~lAL  275 (550)
T KOG4224|consen  205 VHAGGLPVLVSLLKSGDL--------DVQYYCTTAISNIA-VDRRARKILAQAEPKLVPALVDLMDDGSDKVKCQAGLAL  275 (550)
T ss_pred             hccCCchhhhhhhccCCh--------hHHHHHHHHhhhhh-hhHHHHHHHHhcccchHHHHHHHHhCCChHHHHHHHHHH
Confidence            999999999999999887        89999999999999 4666677777776  999999999999999999999999


Q ss_pred             HHhhcCChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHHCCCcHHHHHhhcCCCh-HHHHH
Q 015851          232 RTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCS-ESQRE  310 (399)
Q Consensus       232 ~~L~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~-~v~~~  310 (399)
                      +||+. ..++...+++.|.+|.++.+++++..........++.|++.+ +-+...+.+.|++.+|+.+|+.++. +++.+
T Consensus       276 rnlas-dt~Yq~eiv~ag~lP~lv~Llqs~~~plilasVaCIrnisih-plNe~lI~dagfl~pLVrlL~~~dnEeiqch  353 (550)
T KOG4224|consen  276 RNLAS-DTEYQREIVEAGSLPLLVELLQSPMGPLILASVACIRNISIH-PLNEVLIADAGFLRPLVRLLRAGDNEEIQCH  353 (550)
T ss_pred             hhhcc-cchhhhHHHhcCCchHHHHHHhCcchhHHHHHHHHHhhcccc-cCcccceecccchhHHHHHHhcCCchhhhhh
Confidence            99998 689999999999999999999999888888999999999976 5666788899999999999996554 69999


Q ss_pred             HHHHHHHhhccChhhHHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhccCCCC
Q 015851          311 AALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQVITVS  367 (399)
Q Consensus       311 a~~~L~~l~~~~~~~~~~l~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~  367 (399)
                      |..+|+|++..+..+++.+.+.|++|++..++.++...++.....++..++-+...+
T Consensus       354 AvstLrnLAasse~n~~~i~esgAi~kl~eL~lD~pvsvqseisac~a~Lal~d~~k  410 (550)
T KOG4224|consen  354 AVSTLRNLAASSEHNVSVIRESGAIPKLIELLLDGPVSVQSEISACIAQLALNDNDK  410 (550)
T ss_pred             HHHHHHHHhhhhhhhhHHHhhcCchHHHHHHHhcCChhHHHHHHHHHHHHHhccccH
Confidence            999999999878899999999999999999999999999999999999999877653

>PF05804 KAP: Kinesin-associated protein (KAP)

Probab=99.88  E-value=1.1e-19  Score=176.08  Aligned_cols=314  Identities=20%  Similarity=0.229  Sum_probs=253.2

Q ss_pred             hHHHhHhhhhhhHHHHhhhhhcchhhhHHHHHHHHHHHHHHcCChhHHHHHHhCCChHHHHhcccCCCCcccccCCCcch
Q 015851           50 DARQALLSEVSAQVNVLNTTFSWLEADRAAAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFE  129 (399)
Q Consensus        50 d~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~  129 (399)
                      |+.........+.++.|.+++.  .++.+....++..|.+|+-..+++..+.+.|+++.|+.++.+++.           
T Consensus       279 d~~ve~kM~~~~iV~~Lv~~Ld--r~n~ellil~v~fLkkLSi~~ENK~~m~~~giV~kL~kLl~s~~~-----------  345 (708)
T PF05804_consen  279 DPRVELKMVNKGIVSLLVKCLD--RENEELLILAVTFLKKLSIFKENKDEMAESGIVEKLLKLLPSENE-----------  345 (708)
T ss_pred             ChHHHHHHHhcCCHHHHHHHHc--CCCHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHhcCCCH-----------
Confidence            3333444457788888888884  456778999999999999999999999999999999999998765           


Q ss_pred             HHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhhcCchhHHHHHhcCCh
Q 015851          130 HEVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGI  209 (399)
Q Consensus       130 ~~~~~~a~~~L~~l~~~~~~~~~i~~~~~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i  209 (399)
                       +++..++++|.||+.+++.|..++..|++|.|+.+|.+.          ..+..++.+|++++. ++..+..+...+++
T Consensus       346 -~l~~~aLrlL~NLSfd~~~R~~mV~~GlIPkLv~LL~d~----------~~~~val~iLy~LS~-dd~~r~~f~~TdcI  413 (708)
T PF05804_consen  346 -DLVNVALRLLFNLSFDPELRSQMVSLGLIPKLVELLKDP----------NFREVALKILYNLSM-DDEARSMFAYTDCI  413 (708)
T ss_pred             -HHHHHHHHHHHHhCcCHHHHHHHHHCCCcHHHHHHhCCC----------chHHHHHHHHHHhcc-CHhhHHHHhhcchH
Confidence             789999999999999999999999999999999999854          445678999999995 66788889889999


Q ss_pred             HHHHHhhcC-CCHHHHHHHHHHHHHhhcCChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHH
Q 015851          210 PPLVELLEF-TDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVL  288 (399)
Q Consensus       210 ~~L~~ll~~-~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~  288 (399)
                      |.+++++.+ +++.+...++..+.|++. ++.+.+.+++.++++.|+...-.....+   ....+.|++.+++..+..+.
T Consensus       414 p~L~~~Ll~~~~~~v~~eliaL~iNLa~-~~rnaqlm~~g~gL~~L~~ra~~~~D~l---LlKlIRNiS~h~~~~k~~f~  489 (708)
T PF05804_consen  414 PQLMQMLLENSEEEVQLELIALLINLAL-NKRNAQLMCEGNGLQSLMKRALKTRDPL---LLKLIRNISQHDGPLKELFV  489 (708)
T ss_pred             HHHHHHHHhCCCccccHHHHHHHHHHhc-CHHHHHHHHhcCcHHHHHHHHHhcccHH---HHHHHHHHHhcCchHHHHHH
Confidence            999998655 557778888999999998 7899999999999999997654433222   34689999987645444443


Q ss_pred             HCCCcHHHHHhhcC-CChHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHhhCC--CCHHHHHHHHHHHHHhhccCC
Q 015851          289 AAGALQPVIGLLSS-CCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQS--PDVQLREMSAFALGRLAQVIT  365 (399)
Q Consensus       289 ~~~~l~~L~~lL~~-~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~v~~L~~ll~~--~~~~v~~~a~~~L~~l~~~~~  365 (399)
                        +.+..|+..+.. .+.+...++.++|+|++..+.+....+.+.+++|.|.++|..  .++++.-.++..++.++.+..
T Consensus       490 --~~i~~L~~~v~~~~~ee~~vE~LGiLaNL~~~~ld~~~ll~~~~llp~L~~~L~~g~~~dDl~LE~Vi~~gtla~d~~  567 (708)
T PF05804_consen  490 --DFIGDLAKIVSSGDSEEFVVECLGILANLTIPDLDWAQLLQEYNLLPWLKDLLKPGASEDDLLLEVVILLGTLASDPE  567 (708)
T ss_pred             --HHHHHHHHHhhcCCcHHHHHHHHHHHHhcccCCcCHHHHHHhCCHHHHHHHHhCCCCCChHHHHHHHHHHHHHHCCHH
Confidence              578888888875 466899999999999987555666666678999999999964  356788889999999997654


Q ss_pred             C-------CcchhHHHHHhhccccHHHHHHHHhhhH
Q 015851          366 V-------SVLPAILIFIIINECQLEVLAFVLSEMV  394 (399)
Q Consensus       366 ~-------~~~~~~~~~~~~~~~~~~~~~~~l~~~~  394 (399)
                      .       ++++.++.++..+...+++..+++..|-
T Consensus       568 ~A~lL~~sgli~~Li~LL~~kqeDdE~VlQil~~f~  603 (708)
T PF05804_consen  568 CAPLLAKSGLIPTLIELLNAKQEDDEIVLQILYVFY  603 (708)
T ss_pred             HHHHHHhCChHHHHHHHHHhhCchHHHHHHHHHHHH
Confidence            2       4677777777767777788777776554

>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]

Probab=99.86  E-value=6.2e-21  Score=188.00  Aligned_cols=278  Identities=22%  Similarity=0.203  Sum_probs=235.5

Q ss_pred             HHHHHHHHHHcCChhHHHHHHhCCChHHHHhcccCCCCcccccCCCcchHHHHHHHHHHHHHhc-CChhhHHHHH-hcCc
Q 015851           81 KRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA-VKPEHQQLIV-DNGA  158 (399)
Q Consensus        81 ~~a~~~L~~l~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~~~~~a~~~L~~l~-~~~~~~~~i~-~~~~  158 (399)
                      ..|+.+|-+++.|+++|..+-+.|++..+.+|+.-+..--..-+.....-.+|+++.++|.||+ .+..++..+. ..|+
T Consensus       316 caA~~~lMK~SFDEEhR~aM~ELG~LqAIaeLl~vDh~mhgp~tnd~~~~aLRrYa~MALTNLTFGDv~NKa~LCs~rgf  395 (2195)
T KOG2122|consen  316 CAALCTLMKLSFDEEHRHAMNELGGLQAIAELLQVDHEMHGPETNDGECNALRRYAGMALTNLTFGDVANKATLCSQRGF  395 (2195)
T ss_pred             HHHHHHHHHhhccHHHHHHHHHhhhHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhccccccccchhhhhhhhhH
Confidence            3788889999999999999999999999999886432211101122334478999999999999 5555665544 5789


Q ss_pred             HHHHHHHHhccccCccccccHHHHHHHHHHHHHHhh-cCchhHHHHHhcCChHHHHHh-hcCCCHHHHHHHHHHHHHhhc
Q 015851          159 LSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAH-ENSSIKTRVRMEGGIPPLVEL-LEFTDTKVQRAAAGALRTLAF  236 (399)
Q Consensus       159 i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~-~~~~~~~~~~~~~~i~~L~~l-l~~~~~~v~~~a~~~L~~L~~  236 (399)
                      +..++..|.+..+        ++....+.+|.||+. .+.+.+..+...|-+..|+.+ |....+......+.+||||+.
T Consensus       396 MeavVAQL~s~pe--------eL~QV~AsvLRNLSWRAD~nmKkvLrE~GsVtaLa~~al~~~kEsTLKavLSALWNLSA  467 (2195)
T KOG2122|consen  396 MEAVVAQLISAPE--------ELLQVYASVLRNLSWRADSNMKKVLRETGSVTALAACALRNKKESTLKAVLSALWNLSA  467 (2195)
T ss_pred             HHHHHHHHhcChH--------HHHHHHHHHHHhccccccccHHHHHHhhhhHHHHHHHHHHhcccchHHHHHHHHhhhhh
Confidence            9999999999887        899999999999994 445566667777888888887 555667888999999999999


Q ss_pred             CChhhHHHHHh-cCCHHHHHHhhcCC----CHHHHHHHHHHHHHhh---cCChhHHHHHHHCCCcHHHHHhhcCCChHHH
Q 015851          237 KNDENKNQIVE-CNALPTLILMLRSE----DSAIHYEAVGVIGNLV---HSSPNIKKEVLAAGALQPVIGLLSSCCSESQ  308 (399)
Q Consensus       237 ~~~~~~~~~~~-~~~~~~L~~ll~~~----~~~v~~~a~~~L~~l~---~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~  308 (399)
                      +..+++..|+. .|++..|+.+|..+    .-.+.+.|-++|.|++   ...+.+++.+.+++.+..|+..|++.+..+.
T Consensus       468 HcteNKA~iCaVDGALaFLVg~LSY~~qs~tLaIIEsaGGILRNVSS~IAt~E~yRQILR~~NCLq~LLQ~LKS~SLTiV  547 (2195)
T KOG2122|consen  468 HCTENKAEICAVDGALAFLVGTLSYEGQSNTLAIIESAGGILRNVSSLIATCEDYRQILRRHNCLQTLLQHLKSHSLTIV  547 (2195)
T ss_pred             cccccchhhhcccchHHHHHhhccccCCcchhhhhhcCccHHHHHHhHhhccchHHHHHHHhhHHHHHHHHhhhcceEEe
Confidence            99999999998 68999999999864    4478889999998876   3456788999999999999999999999999


Q ss_pred             HHHHHHHHHhhccChhhHHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhccCCC
Q 015851          309 REAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQVITV  366 (399)
Q Consensus       309 ~~a~~~L~~l~~~~~~~~~~l~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~  366 (399)
                      .++|++||||...+++.++.+++.|+++.|..++++++..+..-++.+|.|+..+.+.
T Consensus       548 SNaCGTLWNLSAR~p~DQq~LwD~gAv~mLrnLIhSKhkMIa~GSaaALrNLln~RPA  605 (2195)
T KOG2122|consen  548 SNACGTLWNLSARSPEDQQMLWDDGAVPMLRNLIHSKHKMIAMGSAAALRNLLNFRPA  605 (2195)
T ss_pred             ecchhhhhhhhcCCHHHHHHHHhcccHHHHHHHHhhhhhhhhhhHHHHHHHHhcCCch
Confidence            9999999999999999999999999999999999999999999999999999988764

>PF05804 KAP: Kinesin-associated protein (KAP)

Probab=99.85  E-value=1.6e-18  Score=168.14  Aligned_cols=282  Identities=18%  Similarity=0.231  Sum_probs=224.9

Q ss_pred             hhhHHHHhhhhhcchhhhHHHHHHHHHHHHHHcCChhHHHHHHhCCChHHHHhcccCCCCcccccCCCcchHHHHHHHHH
Q 015851           59 VSAQVNVLNTTFSWLEADRAAAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAF  138 (399)
Q Consensus        59 ~~~~~~~L~~~l~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~~~~~a~~  138 (399)
                      ..++++.|.+++  ++++...+..+++.|.|++.+++.|..+++.|++|.|+.+|.+++              .+..+..
T Consensus       329 ~~giV~kL~kLl--~s~~~~l~~~aLrlL~NLSfd~~~R~~mV~~GlIPkLv~LL~d~~--------------~~~val~  392 (708)
T PF05804_consen  329 ESGIVEKLLKLL--PSENEDLVNVALRLLFNLSFDPELRSQMVSLGLIPKLVELLKDPN--------------FREVALK  392 (708)
T ss_pred             HcCCHHHHHHHh--cCCCHHHHHHHHHHHHHhCcCHHHHHHHHHCCCcHHHHHHhCCCc--------------hHHHHHH
Confidence            445788888887  445667899999999999999999999999999999999998643              3457999


Q ss_pred             HHHHhcCChhhHHHHHhcCcHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhhcCchhHHHHHhcCChH--------
Q 015851          139 ALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIP--------  210 (399)
Q Consensus       139 ~L~~l~~~~~~~~~i~~~~~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~--------  210 (399)
                      +|.+++.+++++..+...++++.+++++...+.+       ++...++..+.|++. ++...+.+...++++        
T Consensus       393 iLy~LS~dd~~r~~f~~TdcIp~L~~~Ll~~~~~-------~v~~eliaL~iNLa~-~~rnaqlm~~g~gL~~L~~ra~~  464 (708)
T PF05804_consen  393 ILYNLSMDDEARSMFAYTDCIPQLMQMLLENSEE-------EVQLELIALLINLAL-NKRNAQLMCEGNGLQSLMKRALK  464 (708)
T ss_pred             HHHHhccCHhhHHHHhhcchHHHHHHHHHhCCCc-------cccHHHHHHHHHHhc-CHHHHHHHHhcCcHHHHHHHHHh
Confidence            9999999999999999999999999998776544       333445555555553 222223333334443        


Q ss_pred             -----------------------------HHHHhhcCC-CHHHHHHHHHHHHHhhcCChhhHHHHHhcCCHHHHHHhhcC
Q 015851          211 -----------------------------PLVELLEFT-DTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRS  260 (399)
Q Consensus       211 -----------------------------~L~~ll~~~-~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~L~~ll~~  260 (399)
                                                   .|+..+..+ +++....++++|+||...+.+....+-+.+.+|.+.++|..
T Consensus       465 ~~D~lLlKlIRNiS~h~~~~k~~f~~~i~~L~~~v~~~~~ee~~vE~LGiLaNL~~~~ld~~~ll~~~~llp~L~~~L~~  544 (708)
T PF05804_consen  465 TRDPLLLKLIRNISQHDGPLKELFVDFIGDLAKIVSSGDSEEFVVECLGILANLTIPDLDWAQLLQEYNLLPWLKDLLKP  544 (708)
T ss_pred             cccHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHhcccCCcCHHHHHHhCCHHHHHHHHhCC
Confidence                                         334444433 57888999999999998555555556668999999999976


Q ss_pred             C--CHHHHHHHHHHHHHhhcCChhHHHHHHHCCCcHHHHHhhcC--CChHHHHHHHHHHHHhhccChhhHHHHHh-cCCH
Q 015851          261 E--DSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSS--CCSESQREAALLLGQFAATDSDCKVHIVQ-RGAV  335 (399)
Q Consensus       261 ~--~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~--~~~~v~~~a~~~L~~l~~~~~~~~~~l~~-~g~v  335 (399)
                      +  ++++..+++..++.++. ++.....+.+.|+++.|+.+|+.  .+.++..+.++++.++..+ ++.+..+.. .+++
T Consensus       545 g~~~dDl~LE~Vi~~gtla~-d~~~A~lL~~sgli~~Li~LL~~kqeDdE~VlQil~~f~~ll~h-~~tr~~ll~~~~~~  622 (708)
T PF05804_consen  545 GASEDDLLLEVVILLGTLAS-DPECAPLLAKSGLIPTLIELLNAKQEDDEIVLQILYVFYQLLFH-EETREVLLKETEIP  622 (708)
T ss_pred             CCCChHHHHHHHHHHHHHHC-CHHHHHHHHhCChHHHHHHHHHhhCchHHHHHHHHHHHHHHHcC-hHHHHHHHhccchH
Confidence            4  55799999999999985 57888888899999999999974  5679999999999999976 667776654 8899


Q ss_pred             HHHHHhhCCCCHHHHHHHHHHHHHhhccCCC
Q 015851          336 RPLIEMLQSPDVQLREMSAFALGRLAQVITV  366 (399)
Q Consensus       336 ~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~  366 (399)
                      ..|+.+++++++++|+.|-.+|.-++..+..
T Consensus       623 ~ylidL~~d~N~~ir~~~d~~Ldii~e~d~~  653 (708)
T PF05804_consen  623 AYLIDLMHDKNAEIRKVCDNALDIIAEYDEE  653 (708)
T ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHHHHhCHH
Confidence            9999999999999999999999999988874

>KOG4199 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.78  E-value=3.2e-16  Score=134.30  Aligned_cols=283  Identities=17%  Similarity=0.238  Sum_probs=232.8

Q ss_pred             HHHhhhhhcchhhhHHHHHHHHHHHHHHcC-ChhHHHHHHhCCChHHHHhcccCCCCcccccCCCcchHHHHHHHHHHHH
Q 015851           63 VNVLNTTFSWLEADRAAAKRATHVLAELAK-NEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALG  141 (399)
Q Consensus        63 ~~~L~~~l~~~~~~~~~~~~a~~~L~~l~~-~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~~~~~a~~~L~  141 (399)
                      +..+..++..+.++.++-...+.++..-+- ++.+|..|.+.++++.+.+.|......           ++.+...|++.
T Consensus       147 ~~vvv~lL~~~~~~~dlt~~~~~~v~~Ac~~hE~nrQ~~m~~~il~Li~~~l~~~gk~-----------~~VRel~~a~r  215 (461)
T KOG4199|consen  147 MAVVLKLLALKVESEEVTLLTLQWLQKACIMHEVNRQLFMELKILELILQVLNREGKT-----------RTVRELYDAIR  215 (461)
T ss_pred             HHHHHHHHhcccchHHHHHHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHcccCcc-----------HHHHHHHHHHH
Confidence            344555555566667777778888888776 699999999999999999888766542           57788999999


Q ss_pred             HhcCChh----------hHHHHHhcCcHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhhcCchhHHHHHhcCChHH
Q 015851          142 LLAVKPE----------HQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPP  211 (399)
Q Consensus       142 ~l~~~~~----------~~~~i~~~~~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~  211 (399)
                      -|..+++          +...|...|++..|++.++-..++       ++....+.+|..|+..++-+ ..+.+.|++..
T Consensus       216 ~l~~dDDiRV~fg~ah~hAr~ia~e~~l~~L~Eal~A~~dp-------~~L~~l~~tl~~lAVr~E~C-~~I~e~GGl~t  287 (461)
T KOG4199|consen  216 ALLTDDDIRVVFGQAHGHARTIAKEGILTALTEALQAGIDP-------DSLVSLSTTLKALAVRDEIC-KSIAESGGLDT  287 (461)
T ss_pred             HhcCCCceeeecchhhHHHHHHHHhhhHHHHHHHHHccCCc-------cHHHHHHHHHHHHHHHHHHH-HHHHHccCHHH
Confidence            9984443          456778888999999999988775       78888999999999655544 45889999999


Q ss_pred             HHHhhcCCC-H---HHHHHHHHHHHHhhcCChhhHHHHHhcCCHHHHHHhhc--CCCHHHHHHHHHHHHHhhcCChhHHH
Q 015851          212 LVELLEFTD-T---KVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLR--SEDSAIHYEAVGVIGNLVHSSPNIKK  285 (399)
Q Consensus       212 L~~ll~~~~-~---~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~L~~ll~--~~~~~v~~~a~~~L~~l~~~~~~~~~  285 (399)
                      +++++.+.+ .   .....+++.|+.|+- +++.+..+++.|+.+.++.++.  +++|.+...++.+++-|+-..++...
T Consensus       288 l~~~i~d~n~~~~r~l~k~~lslLralAG-~DsvKs~IV~~gg~~~ii~l~~~h~~~p~Vi~~~~a~i~~l~LR~pdhsa  366 (461)
T KOG4199|consen  288 LLRCIDDSNEQGNRTLAKTCLSLLRALAG-SDSVKSTIVEKGGLDKIITLALRHSDDPLVIQEVMAIISILCLRSPDHSA  366 (461)
T ss_pred             HHHHHhhhchhhHHHHHHHHHHHHHHHhC-CCchHHHHHHhcChHHHHHHHHHcCCChHHHHHHHHHHHHHHhcCcchHH
Confidence            999998844 3   355677888888885 8999999999999999998875  46899999999999999988899989


Q ss_pred             HHHHCCCcHHHHHhhcCCC--hHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhcc
Q 015851          286 EVLAAGALQPVIGLLSSCC--SESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQV  363 (399)
Q Consensus       286 ~~~~~~~l~~L~~lL~~~~--~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~  363 (399)
                      .+++.|+-...++.|+..+  ..++++|||.|.|++..+.+++..++..| ++.|+..-...++.+...|..+|+.|..+
T Consensus       367 ~~ie~G~a~~avqAmkahP~~a~vQrnac~~IRNiv~rs~~~~~~~l~~G-iE~Li~~A~~~h~tce~~akaALRDLGc~  445 (461)
T KOG4199|consen  367 KAIEAGAADLAVQAMKAHPVAAQVQRNACNMIRNIVVRSAENRTILLANG-IEKLIRTAKANHETCEAAAKAALRDLGCD  445 (461)
T ss_pred             HHHhcchHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHhhhhccchHHhcc-HHHHHHHHHhcCccHHHHHHHHHHhcCcc
Confidence            9999999999999998543  37999999999999998888888777765 57788888888999999999999999876


Q ss_pred             CCC
Q 015851          364 ITV  366 (399)
Q Consensus       364 ~~~  366 (399)
                      ...
T Consensus       446 v~l  448 (461)
T KOG4199|consen  446 VYL  448 (461)
T ss_pred             hhh
Confidence            553

>KOG4199 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.77  E-value=2.9e-15  Score=128.50  Aligned_cols=271  Identities=17%  Similarity=0.253  Sum_probs=225.2

Q ss_pred             hhhHHHHHHHHHHHHHHcCC-hhHHHHHHhCCChHHHHhcccCCCCcccccCCCcchHHHHHHHHHHHHHhc-CChhhHH
Q 015851           74 EADRAAAKRATHVLAELAKN-EEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA-VKPEHQQ  151 (399)
Q Consensus        74 ~~~~~~~~~a~~~L~~l~~~-~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~~~~~a~~~L~~l~-~~~~~~~  151 (399)
                      +.+.....+++.+|..+... |+    +++..++..++.+|.....          +.++-.....++..-| .+..+|+
T Consensus       118 ~~~~~~l~ksL~al~~lt~~qpd----l~da~g~~vvv~lL~~~~~----------~~dlt~~~~~~v~~Ac~~hE~nrQ  183 (461)
T KOG4199|consen  118 SPNESVLKKSLEAINSLTHKQPD----LFDAEAMAVVLKLLALKVE----------SEEVTLLTLQWLQKACIMHEVNRQ  183 (461)
T ss_pred             CCchhHHHHHHHHHHHhhcCCcc----hhccccHHHHHHHHhcccc----------hHHHHHHHHHHHHHHHHHhHHHHH
Confidence            44556677888888877765 54    4577889999999876544          2377778888888888 8899999


Q ss_pred             HHHhcCcHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhhcCc---------hhHHHHHhcCChHHHHHhhcCC-CH
Q 015851          152 LIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENS---------SIKTRVRMEGGIPPLVELLEFT-DT  221 (399)
Q Consensus       152 ~i~~~~~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~---------~~~~~~~~~~~i~~L~~ll~~~-~~  221 (399)
                      .+++.++++.+.+.|......       .+.+..+|++..|..+++         .....+...|++..|++.+.-. +|
T Consensus       184 ~~m~~~il~Li~~~l~~~gk~-------~~VRel~~a~r~l~~dDDiRV~fg~ah~hAr~ia~e~~l~~L~Eal~A~~dp  256 (461)
T KOG4199|consen  184 LFMELKILELILQVLNREGKT-------RTVRELYDAIRALLTDDDIRVVFGQAHGHARTIAKEGILTALTEALQAGIDP  256 (461)
T ss_pred             HHHHhhHHHHHHHHHcccCcc-------HHHHHHHHHHHHhcCCCceeeecchhhHHHHHHHHhhhHHHHHHHHHccCCc
Confidence            999999999999898877664       688889999999985443         2234577778899999998763 58


Q ss_pred             HHHHHHHHHHHHhhcCChhhHHHHHhcCCHHHHHHhhcCC-CH---HHHHHHHHHHHHhhcCChhHHHHHHHCCCcHHHH
Q 015851          222 KVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSE-DS---AIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVI  297 (399)
Q Consensus       222 ~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~L~~ll~~~-~~---~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~  297 (399)
                      .+...++.+|..|+. .++.+..+.+.|++..|+.++.+. +.   ++...++..|..|+ +++..+..+++.|+.+.++
T Consensus       257 ~~L~~l~~tl~~lAV-r~E~C~~I~e~GGl~tl~~~i~d~n~~~~r~l~k~~lslLralA-G~DsvKs~IV~~gg~~~ii  334 (461)
T KOG4199|consen  257 DSLVSLSTTLKALAV-RDEICKSIAESGGLDTLLRCIDDSNEQGNRTLAKTCLSLLRALA-GSDSVKSTIVEKGGLDKII  334 (461)
T ss_pred             cHHHHHHHHHHHHHH-HHHHHHHHHHccCHHHHHHHHhhhchhhHHHHHHHHHHHHHHHh-CCCchHHHHHHhcChHHHH
Confidence            899999999999998 789999999999999999999873 33   45578888899998 5678899999999999999


Q ss_pred             Hhhc--CCChHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHhhCC--CCHHHHHHHHHHHHHhhccCCCC
Q 015851          298 GLLS--SCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQS--PDVQLREMSAFALGRLAQVITVS  367 (399)
Q Consensus       298 ~lL~--~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~v~~L~~ll~~--~~~~v~~~a~~~L~~l~~~~~~~  367 (399)
                      .++.  +.+|.+..+++.+++-++-..|++...+++.|+-...++.|+.  ....++++|+++++|++..+.+.
T Consensus       335 ~l~~~h~~~p~Vi~~~~a~i~~l~LR~pdhsa~~ie~G~a~~avqAmkahP~~a~vQrnac~~IRNiv~rs~~~  408 (461)
T KOG4199|consen  335 TLALRHSDDPLVIQEVMAIISILCLRSPDHSAKAIEAGAADLAVQAMKAHPVAAQVQRNACNMIRNIVVRSAEN  408 (461)
T ss_pred             HHHHHcCCChHHHHHHHHHHHHHHhcCcchHHHHHhcchHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHhhhhc
Confidence            9975  5788999999999999999999999999999999999999964  35679999999999999888763

>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]

Probab=99.73  E-value=2.1e-16  Score=156.59  Aligned_cols=286  Identities=20%  Similarity=0.268  Sum_probs=229.0

Q ss_pred             HHHHHHHHHHcCChhHHHHHHhCCChHHHHhcccCCCCcccc--------------------------------------
Q 015851           81 KRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEAD--------------------------------------  122 (399)
Q Consensus        81 ~~a~~~L~~l~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~--------------------------------------  122 (399)
                      +.-...|..++.+++.+..++..|+++.|+++|.-.+....+                                      
T Consensus       212 ee~ar~fLemSss~esCaamR~SgCLpLLvQilH~~d~~~kear~~A~aALHNIVhSqPD~kr~RRE~kvL~lLeQIraY  291 (2195)
T KOG2122|consen  212 EEMARTFLEMSSSPESCAAMRRSGCLPLLVQILHGPDDEDKEARKRASAALHNIVHSQPDEKRGRREKKVLHLLEQIRAY  291 (2195)
T ss_pred             HHHHHHHHHhccCchhhHHHHhccchHHHHHHhhCCchhhHHHHHHHHHHHHHHhhcCcchhhhHHHHHHHHHHHHHHHH
Confidence            366888999999999999999999999999999876653222                                      


Q ss_pred             -----------cC-CCcchHHHH-HHHHHHHHHhcCChhhHHHHHhcCcHHHHHHHHhccccC----ccccccHHHHHHH
Q 015851          123 -----------RN-LKPFEHEVE-KGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDS----NCSRAVNSVIRRA  185 (399)
Q Consensus       123 -----------~~-~~~~~~~~~-~~a~~~L~~l~~~~~~~~~i~~~~~i~~L~~~L~~~~~~----~~~~~~~~~~~~a  185 (399)
                                 +. ..+...+-+ +.|+.+|..++.+.++|..+.+.|++..+-+++.-....    ........+++++
T Consensus       292 C~~~~~~lqar~~~~apa~~~H~lcaA~~~lMK~SFDEEhR~aM~ELG~LqAIaeLl~vDh~mhgp~tnd~~~~aLRrYa  371 (2195)
T KOG2122|consen  292 CETCWTWLQARGPAIAPASDEHQLCAALCTLMKLSFDEEHRHAMNELGGLQAIAELLQVDHEMHGPETNDGECNALRRYA  371 (2195)
T ss_pred             HHHHHHHHHhcCCCCCCcccchhhHHHHHHHHHhhccHHHHHHHHHhhhHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHH
Confidence                       00 001111112 378889999999999999999999999999988653221    1111223899999


Q ss_pred             HHHHHHHhhcCchhHHHHH-hcCChHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhhHHHH-HhcCCHHHHHHh-hcCCC
Q 015851          186 ADAITNLAHENSSIKTRVR-MEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQI-VECNALPTLILM-LRSED  262 (399)
Q Consensus       186 ~~~L~~l~~~~~~~~~~~~-~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~-~~~~~~~~L~~l-l~~~~  262 (399)
                      ..+|.||...+...+..+. ..|++..++..|.+...++....+++|+||++..+.+...+ .+.|.+..|+.. |+...
T Consensus       372 ~MALTNLTFGDv~NKa~LCs~rgfMeavVAQL~s~peeL~QV~AsvLRNLSWRAD~nmKkvLrE~GsVtaLa~~al~~~k  451 (2195)
T KOG2122|consen  372 GMALTNLTFGDVANKATLCSQRGFMEAVVAQLISAPEELLQVYASVLRNLSWRADSNMKKVLRETGSVTALAACALRNKK  451 (2195)
T ss_pred             HHHhhccccccccchhhhhhhhhHHHHHHHHHhcChHHHHHHHHHHHHhccccccccHHHHHHhhhhHHHHHHHHHHhcc
Confidence            9999999998887776554 45899999999999999999999999999999777765554 557888888875 45566


Q ss_pred             HHHHHHHHHHHHHhhcCChhHHHHHHH-CCCcHHHHHhhcCC----ChHHHHHHHHHHHHhhcc---ChhhHHHHHhcCC
Q 015851          263 SAIHYEAVGVIGNLVHSSPNIKKEVLA-AGALQPVIGLLSSC----CSESQREAALLLGQFAAT---DSDCKVHIVQRGA  334 (399)
Q Consensus       263 ~~v~~~a~~~L~~l~~~~~~~~~~~~~-~~~l~~L~~lL~~~----~~~v~~~a~~~L~~l~~~---~~~~~~~l~~~g~  334 (399)
                      +......+.+||||+.+..+++..|.. .|++..|+.+|...    ...+.+.|.++|.|.+..   .++.++.+.+.++
T Consensus       452 EsTLKavLSALWNLSAHcteNKA~iCaVDGALaFLVg~LSY~~qs~tLaIIEsaGGILRNVSS~IAt~E~yRQILR~~NC  531 (2195)
T KOG2122|consen  452 ESTLKAVLSALWNLSAHCTENKAEICAVDGALAFLVGTLSYEGQSNTLAIIESAGGILRNVSSLIATCEDYRQILRRHNC  531 (2195)
T ss_pred             cchHHHHHHHHhhhhhcccccchhhhcccchHHHHHhhccccCCcchhhhhhcCccHHHHHHhHhhccchHHHHHHHhhH
Confidence            678889999999999888888877765 57899999999754    337888888898887754   4678888999999


Q ss_pred             HHHHHHhhCCCCHHHHHHHHHHHHHhhccCCC
Q 015851          335 VRPLIEMLQSPDVQLREMSAFALGRLAQVITV  366 (399)
Q Consensus       335 v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~  366 (399)
                      +..|++.|++.+.-|..+++.+|+||....+.
T Consensus       532 Lq~LLQ~LKS~SLTiVSNaCGTLWNLSAR~p~  563 (2195)
T KOG2122|consen  532 LQTLLQHLKSHSLTIVSNACGTLWNLSARSPE  563 (2195)
T ss_pred             HHHHHHHhhhcceEEeecchhhhhhhhcCCHH
Confidence            99999999999999999999999999987774

>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function

Probab=99.70  E-value=2.8e-15  Score=129.39  Aligned_cols=197  Identities=17%  Similarity=0.160  Sum_probs=167.3

Q ss_pred             hhhhHHHHhhhhhcchhhhHHHHHHHHHHHHHHcCChhHHHHHHhCCChHHHHhcccCCCCcccccCCCcchHHHHHHHH
Q 015851           58 EVSAQVNVLNTTFSWLEADRAAAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSA  137 (399)
Q Consensus        58 ~~~~~~~~L~~~l~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~~~~~a~  137 (399)
                      +.++.++.|..++. ...|+.++..|+.++++.+..+.+++.+.+.|+++.+..+|.++++            .++..|+
T Consensus         9 l~~~~l~~Ll~lL~-~t~dp~i~e~al~al~n~aaf~~nq~~Ir~~Ggi~lI~~lL~~p~~------------~vr~~AL   75 (254)
T PF04826_consen    9 LEAQELQKLLCLLE-STEDPFIQEKALIALGNSAAFPFNQDIIRDLGGISLIGSLLNDPNP------------SVREKAL   75 (254)
T ss_pred             cCHHHHHHHHHHHh-cCCChHHHHHHHHHHHhhccChhHHHHHHHcCCHHHHHHHcCCCCh------------HHHHHHH
Confidence            44556677777764 2468899999999999999999999999999999999999999877            7899999


Q ss_pred             HHHHHhcCChhhHHHHHhcCcHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhhc
Q 015851          138 FALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLE  217 (399)
Q Consensus       138 ~~L~~l~~~~~~~~~i~~~~~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~  217 (399)
                      ++|.|++.+.+++..+-.  +++.+++.+.+...+.      +++..++.+|.||+..+. .+..+.  +.++.++.+|.
T Consensus        76 ~aL~Nls~~~en~~~Ik~--~i~~Vc~~~~s~~lns------~~Q~agLrlL~nLtv~~~-~~~~l~--~~i~~ll~LL~  144 (254)
T PF04826_consen   76 NALNNLSVNDENQEQIKM--YIPQVCEETVSSPLNS------EVQLAGLRLLTNLTVTND-YHHMLA--NYIPDLLSLLS  144 (254)
T ss_pred             HHHHhcCCChhhHHHHHH--HHHHHHHHHhcCCCCC------HHHHHHHHHHHccCCCcc-hhhhHH--hhHHHHHHHHH
Confidence            999999988888887754  6888888766654332      899999999999995443 344443  47999999999


Q ss_pred             CCCHHHHHHHHHHHHHhhcCChhhHHHHHhcCCHHHHHHhhcCC-CHHHHHHHHHHHHHhhcC
Q 015851          218 FTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSE-DSAIHYEAVGVIGNLVHS  279 (399)
Q Consensus       218 ~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~L~~ll~~~-~~~v~~~a~~~L~~l~~~  279 (399)
                      +++..++..++++|.||+. ++.....++..+++..++.+++.+ +.++...++....||..+
T Consensus       145 ~G~~~~k~~vLk~L~nLS~-np~~~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~  206 (254)
T PF04826_consen  145 SGSEKTKVQVLKVLVNLSE-NPDMTRELLSAQVLSSFLSLFNSSESKENLLRVLTFFENINEN  206 (254)
T ss_pred             cCChHHHHHHHHHHHHhcc-CHHHHHHHHhccchhHHHHHHccCCccHHHHHHHHHHHHHHHh
Confidence            9999999999999999998 899999999999999999999875 678999999999999643

>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]

Probab=99.66  E-value=7.8e-15  Score=139.59  Aligned_cols=281  Identities=21%  Similarity=0.281  Sum_probs=214.4

Q ss_pred             hhHHHHHHHHHHHHHHcC-ChhHHHHHHhCCChHHHHhcccCCCCcccccCCCcchHHHHHHHHHHHHHhc-CC--hhhH
Q 015851           75 ADRAAAKRATHVLAELAK-NEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA-VK--PEHQ  150 (399)
Q Consensus        75 ~~~~~~~~a~~~L~~l~~-~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~~~~~a~~~L~~l~-~~--~~~~  150 (399)
                      .++.+|-.|..-+..++. +.+.+..+.+.|+|+.|+.+|.+...            +++++|+++|.||. ..  .+++
T Consensus       245 q~~~~qsnaaaylQHlcfgd~~ik~~vrqlggI~kLv~Ll~~~~~------------evq~~acgaLRNLvf~~~~~~NK  312 (717)
T KOG1048|consen  245 QDPSVQSNAAAYLQHLCFGDNKIKSRVRQLGGIPKLVALLDHRND------------EVQRQACGALRNLVFGKSTDSNK  312 (717)
T ss_pred             cChhhhHHHHHHHHHHHhhhHHHHHHHHHhccHHHHHHHhcCCcH------------HHHHHHHHHHHhhhcccCCcccc
Confidence            467788899999999999 58888899999999999999999877            89999999999999 33  3488


Q ss_pred             HHHHhcCcHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhhcC------------
Q 015851          151 QLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEF------------  218 (399)
Q Consensus       151 ~~i~~~~~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~------------  218 (399)
                      -.+.+.++++.++++|....+.       ++++.+..+||||++. +..+..+. ...++.|....-.            
T Consensus       313 lai~~~~Gv~~l~~~Lr~t~D~-------ev~e~iTg~LWNLSS~-D~lK~~ii-~~al~tLt~~vI~P~Sgw~~~~~~~  383 (717)
T KOG1048|consen  313 LAIKELNGVPTLVRLLRHTQDD-------EVRELITGILWNLSSN-DALKMLII-TSALSTLTDNVIIPHSGWEEEPAPR  383 (717)
T ss_pred             hhhhhcCChHHHHHHHHhhcch-------HHHHHHHHHHhcccch-hHHHHHHH-HHHHHHHHHhhcccccccCCCCccc
Confidence            8999999999999999986665       9999999999999965 55555343 4455555544321            


Q ss_pred             --CCHHHHHHHHHHHHHhhcCChhhHHHHHh-cCCHHHHHHhhcC------CCHHHHHHHHHHHHHhhcCCh-----hHH
Q 015851          219 --TDTKVQRAAAGALRTLAFKNDENKNQIVE-CNALPTLILMLRS------EDSAIHYEAVGVIGNLVHSSP-----NIK  284 (399)
Q Consensus       219 --~~~~v~~~a~~~L~~L~~~~~~~~~~~~~-~~~~~~L~~ll~~------~~~~v~~~a~~~L~~l~~~~~-----~~~  284 (399)
                        .+..+...+.++|+|++....+.++.+.+ .|.|..|+..+++      .+....+++..++.|+.....     ...
T Consensus       384 ~~~~~~vf~n~tgcLRNlSs~~~eaR~~mr~c~GLIdaL~~~iq~~i~~~~~d~K~VENcvCilRNLSYrl~~Evp~~~~  463 (717)
T KOG1048|consen  384 KAEDSTVFRNVTGCLRNLSSAGQEAREQMRECDGLIDALLFSIQTAIQKSDLDSKSVENCVCILRNLSYRLEAEVPPKYR  463 (717)
T ss_pred             ccccceeeehhhhhhccccchhHHHHHHHhhccchHHHHHHHHHHHHHhccccchhHHHHHHHHhhcCchhhhhcCHhhh
Confidence              12568899999999999988888999988 6889999988873      466788889999999874221     000


Q ss_pred             HHH------------------------------------------------HHCCCcHHHHHhhc-CCChHHHHHHHHHH
Q 015851          285 KEV------------------------------------------------LAAGALQPVIGLLS-SCCSESQREAALLL  315 (399)
Q Consensus       285 ~~~------------------------------------------------~~~~~l~~L~~lL~-~~~~~v~~~a~~~L  315 (399)
                      +.+                                                ....++..-+.+|. +.+..+.+.++++|
T Consensus       464 ~~~~~~~~~~~~~~~~~~~gcf~~k~~k~~~~~~~~~~pe~~~~pkG~e~Lw~p~vVr~Yl~Ll~~s~n~~TlEasaGaL  543 (717)
T KOG1048|consen  464 QVLANIARLPGVGPPAESVGCFGFKKRKSDDNCDDLPIPERATAPKGSEWLWHPSVVRPYLLLLALSKNDNTLEASAGAL  543 (717)
T ss_pred             hHhhcccccccCCCcccccccccchhhhchhcccccCCcccccCCCCceeeecHHHHHHHHHHHHHhcchHHHHHhhhhH
Confidence            000                                                00112223233333 44567889999999


Q ss_pred             HHhhccCh----hhHHHH-HhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhccCCCC------cchhHHHHH
Q 015851          316 GQFAATDS----DCKVHI-VQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQVITVS------VLPAILIFI  376 (399)
Q Consensus       316 ~~l~~~~~----~~~~~l-~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~------~~~~~~~~~  376 (399)
                      -|++.+..    ..+..+ ....+++.|+++++.++..|...++.+|+|++.+..++      .+|.++..+
T Consensus       544 QNltA~~~~~~~~~~~~v~~kekgl~~l~~ll~~~~~~vv~s~a~~LrNls~d~rnk~ligk~a~~~lv~~L  615 (717)
T KOG1048|consen  544 QNLTAGLWTWSEYMRGAVFRKEKGLPPLVELLRNDDSDVVRSAAGALRNLSRDIRNKELIGKYAIPDLVRCL  615 (717)
T ss_pred             hhhhccCCcchhHHHhhhhhhccCccHHHHHHhcCCchHHHHHHHHHhhhccCchhhhhhhcchHHHHHHhC
Confidence            99998753    233334 56889999999999999999999999999999998875      445555444

>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]

Probab=99.64  E-value=4.8e-14  Score=124.87  Aligned_cols=293  Identities=19%  Similarity=0.171  Sum_probs=211.4

Q ss_pred             hHHHHHHHHHHHHHHcCChhHHHHHHhC----CChHHHHhcccCCCCcccccCCCcchHHHHHHHHHHHHHhc-CChhhH
Q 015851           76 DRAAAKRATHVLAELAKNEEVVNWIVEG----GAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA-VKPEHQ  150 (399)
Q Consensus        76 ~~~~~~~a~~~L~~l~~~~~~~~~~~~~----g~l~~L~~lL~~~~~~~~~~~~~~~~~~~~~~a~~~L~~l~-~~~~~~  150 (399)
                      +..++..+..|+...+.++..|..|...    |++..|.+..++++.            ++..++.++|+|+| .+.++|
T Consensus        55 ~~tv~~~qssC~A~~sk~ev~r~~F~~~~I~a~~le~Lrq~psS~d~------------ev~~Q~~RaLgNiCydn~E~R  122 (604)
T KOG4500|consen   55 SDTVYLFQSSCLADRSKNEVERSLFRNYCIDAEALELLRQTPSSPDT------------EVHEQCFRALGNICYDNNENR  122 (604)
T ss_pred             cchhhhhhHHHHHHHhhhHHHHHHHHHHhhHHHHHHHHHhCCCCCcc------------cHHHHHHHHHhhhhccCchhH
Confidence            3456778888999999888777776654    556666666666544            78889999999999 899999


Q ss_pred             HHHHhcCcHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhhcC--C---------
Q 015851          151 QLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEF--T---------  219 (399)
Q Consensus       151 ~~i~~~~~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~--~---------  219 (399)
                      ..+.+.|+-..+++.|+..-..... ..-+.....++.|.|...++...+.++.+.|+++.|...+.-  .         
T Consensus       123 ~a~~~lgGaqivid~L~~~cs~d~~-ane~~~~v~~g~l~Ny~l~~~~l~aq~~~~gVl~tL~~~~~I~~qNaa~~e~ll  201 (604)
T KOG4500|consen  123 AAFFNLGGAQIVIDVLKPYCSKDNP-ANEEYSAVAFGVLHNYILDSRELRAQVADAGVLNTLAITYWIDWQNAALTEKLL  201 (604)
T ss_pred             HHHHhcCCceehHhhhccccccCCc-cHHHHHHHHHHHHHHhhCCcHHHHHHHHhcccHHHHHHHhhcccccHHHHHHHH
Confidence            9999999988888888753221110 111677888999999999899989889999999877655421  1         


Q ss_pred             -----------------------------------CHHHHHHHHHHHHHhhcCChhhHHHHHhcCCHHHHHHhhcC-CC-
Q 015851          220 -----------------------------------DTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRS-ED-  262 (399)
Q Consensus       220 -----------------------------------~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~L~~ll~~-~~-  262 (399)
                                                         ++.+.++....|...+. ++..+-.+.+.|.+..++.+++. ++ 
T Consensus       202 ~~f~nlls~~~e~~~~~~~d~sl~~~l~~ll~~~v~~d~~eM~feila~~ae-nd~Vkl~la~~gl~e~~~~lv~~~k~~  280 (604)
T KOG4500|consen  202 APFFNLLSFVCEMLYPFCKDCSLVFMLLQLLPSMVREDIDEMIFEILAKAAE-NDLVKLSLAQNGLLEDSIDLVRNMKDF  280 (604)
T ss_pred             hccccHHHHHHHhhhhhhccchHHHHHHHHHHHhhccchhhHHHHHHHHHhc-CcceeeehhhcchHHHHHHHHHhcccc
Confidence                                               23344444555555554 45555566777777777777764 11 


Q ss_pred             ------HHHHHHHHHHHHHhhcCChhHHHHHHHCC-CcHHHHHhhcCCChHHHHHHHHHHHHhhccChhhHHHHHhcCCH
Q 015851          263 ------SAIHYEAVGVIGNLVHSSPNIKKEVLAAG-ALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAV  335 (399)
Q Consensus       263 ------~~v~~~a~~~L~~l~~~~~~~~~~~~~~~-~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~v  335 (399)
                            -..-..++....-+..++ +.-+.+...+ +++.+..++.+.+......+..+|+|++.. +++..++++.|.+
T Consensus       281 t~k~d~~~l~k~~~el~vllltGD-eSMq~L~~~p~~l~~~~sw~~S~d~~l~t~g~LaigNfaR~-D~~ci~~v~~~~~  358 (604)
T KOG4500|consen  281 TKKTDMLNLFKRIAELDVLLLTGD-ESMQKLHADPQFLDFLESWFRSDDSNLITMGSLAIGNFARR-DDICIQLVQKDFL  358 (604)
T ss_pred             cchHHHHHHHHhhhhHhhhhhcCc-hHHHHHhcCcHHHHHHHHHhcCCchhHHHHHHHHHHhhhcc-chHHHHHHHHHHH
Confidence                  123334444444454453 3345555555 899999999999999999999999999975 6777889999999


Q ss_pred             HHHHHhhC-----CCCHHHHHHHHHHHHHhhccCCCC-------cchhHHHHHhhccccHH
Q 015851          336 RPLIEMLQ-----SPDVQLREMSAFALGRLAQVITVS-------VLPAILIFIIINECQLE  384 (399)
Q Consensus       336 ~~L~~ll~-----~~~~~v~~~a~~~L~~l~~~~~~~-------~~~~~~~~~~~~~~~~~  384 (399)
                      ..|++++.     +++.+++++++.+|+|++..-+++       ....++..+.+..+.+.
T Consensus       359 nkL~~~l~~~~~vdgnV~~qhA~lsALRnl~IPv~nka~~~~aGvteaIL~~lk~~~ppv~  419 (604)
T KOG4500|consen  359 NKLISCLMQEKDVDGNVERQHACLSALRNLMIPVSNKAHFAPAGVTEAILLQLKLASPPVT  419 (604)
T ss_pred             HHHHHHHHHhcCCCccchhHHHHHHHHHhccccCCchhhccccchHHHHHHHHHhcCCcch
Confidence            99999983     478889999999999999887764       23345555555555443

>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function

Probab=99.60  E-value=1.8e-13  Score=118.26  Aligned_cols=194  Identities=24%  Similarity=0.342  Sum_probs=161.6

Q ss_pred             HhCCChHHHHhcccCCCCcccccCCCcchHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHHHhccccCccccccHH
Q 015851          101 VEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNS  180 (399)
Q Consensus       101 ~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~~~i~~L~~~L~~~~~~~~~~~~~~  180 (399)
                      .+.+-+..|+.+|+....           |.+++.+..++++.+..+.++..+.+.|+++.+..++.+++.        .
T Consensus         9 l~~~~l~~Ll~lL~~t~d-----------p~i~e~al~al~n~aaf~~nq~~Ir~~Ggi~lI~~lL~~p~~--------~   69 (254)
T PF04826_consen    9 LEAQELQKLLCLLESTED-----------PFIQEKALIALGNSAAFPFNQDIIRDLGGISLIGSLLNDPNP--------S   69 (254)
T ss_pred             cCHHHHHHHHHHHhcCCC-----------hHHHHHHHHHHHhhccChhHHHHHHHcCCHHHHHHHcCCCCh--------H
Confidence            456678889999986543           389999999999999999999999999999999999999876        8


Q ss_pred             HHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhhcC--CCHHHHHHHHHHHHHhhcCChhhHHHHHhcCCHHHHHHhh
Q 015851          181 VIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEF--TDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILML  258 (399)
Q Consensus       181 ~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~--~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~L~~ll  258 (399)
                      ++..++++|.|++. +.+.+..+..  .++.+.+.+.+  -+..++..++++|.||+. .+++...+..  .++.++.+|
T Consensus        70 vr~~AL~aL~Nls~-~~en~~~Ik~--~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv-~~~~~~~l~~--~i~~ll~LL  143 (254)
T PF04826_consen   70 VREKALNALNNLSV-NDENQEQIKM--YIPQVCEETVSSPLNSEVQLAGLRLLTNLTV-TNDYHHMLAN--YIPDLLSLL  143 (254)
T ss_pred             HHHHHHHHHHhcCC-ChhhHHHHHH--HHHHHHHHHhcCCCCCHHHHHHHHHHHccCC-CcchhhhHHh--hHHHHHHHH
Confidence            99999999999995 4444444433  46666665444  357899999999999997 4555555543  699999999


Q ss_pred             cCCCHHHHHHHHHHHHHhhcCChhHHHHHHHCCCcHHHHHhhcCC-ChHHHHHHHHHHHHhhc
Q 015851          259 RSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSC-CSESQREAALLLGQFAA  320 (399)
Q Consensus       259 ~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~-~~~v~~~a~~~L~~l~~  320 (399)
                      ..++..++..++++|.||+. ++.....++..+++..++.+++.. +.++...+++...|+..
T Consensus       144 ~~G~~~~k~~vLk~L~nLS~-np~~~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~  205 (254)
T PF04826_consen  144 SSGSEKTKVQVLKVLVNLSE-NPDMTRELLSAQVLSSFLSLFNSSESKENLLRVLTFFENINE  205 (254)
T ss_pred             HcCChHHHHHHHHHHHHhcc-CHHHHHHHHhccchhHHHHHHccCCccHHHHHHHHHHHHHHH
Confidence            99999999999999999996 477788999999999999999865 66889999999999964

>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells

Probab=99.59  E-value=2.6e-12  Score=123.52  Aligned_cols=282  Identities=22%  Similarity=0.251  Sum_probs=223.2

Q ss_pred             hhhHHHHhhhhhcchhhhHHHHHHHHHHHHHHcCC-hhHHHHHHhCCChHHHHhcccCCCCcccccCCCcchHHHHHHHH
Q 015851           59 VSAQVNVLNTTFSWLEADRAAAKRATHVLAELAKN-EEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSA  137 (399)
Q Consensus        59 ~~~~~~~L~~~l~~~~~~~~~~~~a~~~L~~l~~~-~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~~~~~a~  137 (399)
                      .+...+.|...+.  .+++.+|..+++.|.++..+ ......+.+.++++.++.++.+++.            ++...|.
T Consensus        75 ~~~~~~~L~~gL~--h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i~~~L~~~d~------------~Va~~A~  140 (503)
T PF10508_consen   75 LPQYQPFLQRGLT--HPSPKVRRLALKQLGRIARHSEGAAQLLVDNELLPLIIQCLRDPDL------------SVAKAAI  140 (503)
T ss_pred             HHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHHHHHHHHcCCcH------------HHHHHHH
Confidence            4566677777774  45678999999999999987 4446677789999999999998887            7888999


Q ss_pred             HHHHHhcCChhhHHHHHhcCcHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhhc
Q 015851          138 FALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLE  217 (399)
Q Consensus       138 ~~L~~l~~~~~~~~~i~~~~~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~  217 (399)
                      .+|.+++..+...+.+...+.+..|..++...++        .++..+..++.+++..++.....+...|+++.++..+.
T Consensus       141 ~~L~~l~~~~~~~~~l~~~~~~~~L~~l~~~~~~--------~vR~Rv~el~v~i~~~S~~~~~~~~~sgll~~ll~eL~  212 (503)
T PF10508_consen  141 KALKKLASHPEGLEQLFDSNLLSKLKSLMSQSSD--------IVRCRVYELLVEIASHSPEAAEAVVNSGLLDLLLKELD  212 (503)
T ss_pred             HHHHHHhCCchhHHHHhCcchHHHHHHHHhccCH--------HHHHHHHHHHHHHHhcCHHHHHHHHhccHHHHHHHHhc
Confidence            9999999777777788888889999999988665        78888999999999988888888888999999999999


Q ss_pred             CCCHHHHHHHHHHHHHhhcCChhhHHHHHhcCCHHHHHHhhcCC--CH---H-HHHHHHHHHHHhhcCChhHHHHHHHCC
Q 015851          218 FTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSE--DS---A-IHYEAVGVIGNLVHSSPNIKKEVLAAG  291 (399)
Q Consensus       218 ~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~L~~ll~~~--~~---~-v~~~a~~~L~~l~~~~~~~~~~~~~~~  291 (399)
                      ++|.-++..++..|..|+. .+.+...+.+.|+++.|..++.+.  ++   . ..-......++++...+..... .-..
T Consensus       213 ~dDiLvqlnalell~~La~-~~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~la~~~~~~v~~-~~p~  290 (503)
T PF10508_consen  213 SDDILVQLNALELLSELAE-TPHGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGNLARVSPQEVLE-LYPA  290 (503)
T ss_pred             CccHHHHHHHHHHHHHHHc-ChhHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHHHHHHhcChHHHHH-HHHH
Confidence            9999999999999999999 788899999999999999999753  22   1 1223335667777643332211 1134


Q ss_pred             CcHHHHHhhcCCChHHHHHHHHHHHHhhccChhhHHHH-Hh-cCCH----HHHHHhhCCCCHHHHHHHHHHHHHhhccCC
Q 015851          292 ALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHI-VQ-RGAV----RPLIEMLQSPDVQLREMSAFALGRLAQVIT  365 (399)
Q Consensus       292 ~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l-~~-~g~v----~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~  365 (399)
                      ++..+.+++.+.++..+..|..+++.+++ ..+++..+ .. .+.+    ..+-....++..+++..+..++.++-...+
T Consensus       291 ~~~~l~~~~~s~d~~~~~~A~dtlg~igs-t~~G~~~L~~~~~~~~~~~l~~~~~~~~~~~~~lk~r~l~al~~il~~~~  369 (503)
T PF10508_consen  291 FLERLFSMLESQDPTIREVAFDTLGQIGS-TVEGKQLLLQKQGPAMKHVLKAIGDAIKSGSTELKLRALHALASILTSGT  369 (503)
T ss_pred             HHHHHHHHhCCCChhHHHHHHHHHHHHhC-CHHHHHHHHhhcchHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhcCC
Confidence            56677777888999999999999999985 57777777 33 2333    444444456788999999999999965444

26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding

>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]

Probab=99.57  E-value=2.5e-13  Score=129.52  Aligned_cols=287  Identities=20%  Similarity=0.203  Sum_probs=209.4

Q ss_pred             HHHHhhhhhcchhhhHHHHHHHHHHHHHHcCC---hhHHHHHHhCCChHHHHhcccCCCCcccccCCCcchHHHHHHHHH
Q 015851           62 QVNVLNTTFSWLEADRAAAKRATHVLAELAKN---EEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAF  138 (399)
Q Consensus        62 ~~~~L~~~l~~~~~~~~~~~~a~~~L~~l~~~---~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~~~~~a~~  138 (399)
                      -++.|..++  .....+++..|+++|.||..+   .++.-.+...++|+.++++|....+.           ++++.+..
T Consensus       276 gI~kLv~Ll--~~~~~evq~~acgaLRNLvf~~~~~~NKlai~~~~Gv~~l~~~Lr~t~D~-----------ev~e~iTg  342 (717)
T KOG1048|consen  276 GIPKLVALL--DHRNDEVQRQACGALRNLVFGKSTDSNKLAIKELNGVPTLVRLLRHTQDD-----------EVRELITG  342 (717)
T ss_pred             cHHHHHHHh--cCCcHHHHHHHHHHHHhhhcccCCcccchhhhhcCChHHHHHHHHhhcch-----------HHHHHHHH
Confidence            455566665  345678999999999999985   34777899999999999999974332           89999999


Q ss_pred             HHHHhcCChhhHHHHHhcCcHHHHHHHHhcccc----Ccccc--ccHHHHHHHHHHHHHHhhcCchhHHHHHhc-CChHH
Q 015851          139 ALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMD----SNCSR--AVNSVIRRAADAITNLAHENSSIKTRVRME-GGIPP  211 (399)
Q Consensus       139 ~L~~l~~~~~~~~~i~~~~~i~~L~~~L~~~~~----~~~~~--~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~-~~i~~  211 (399)
                      +|+||+.++..+..++.. .+..|...+-....    ++..+  -..++...+.++|.|++......++.+... |.|..
T Consensus       343 ~LWNLSS~D~lK~~ii~~-al~tLt~~vI~P~Sgw~~~~~~~~~~~~~vf~n~tgcLRNlSs~~~eaR~~mr~c~GLIda  421 (717)
T KOG1048|consen  343 ILWNLSSNDALKMLIITS-ALSTLTDNVIIPHSGWEEEPAPRKAEDSTVFRNVTGCLRNLSSAGQEAREQMRECDGLIDA  421 (717)
T ss_pred             HHhcccchhHHHHHHHHH-HHHHHHHhhcccccccCCCCcccccccceeeehhhhhhccccchhHHHHHHHhhccchHHH
Confidence            999999887777776654 45555555433211    00000  001566667777777776555555544433 44454


Q ss_pred             HHHhhc--------------------------------------------------------------------------
Q 015851          212 LVELLE--------------------------------------------------------------------------  217 (399)
Q Consensus       212 L~~ll~--------------------------------------------------------------------------  217 (399)
                      |+..+.                                                                          
T Consensus       422 L~~~iq~~i~~~~~d~K~VENcvCilRNLSYrl~~Evp~~~~~~~~~~~~~~~~~~~~~~~gcf~~k~~k~~~~~~~~~~  501 (717)
T KOG1048|consen  422 LLFSIQTAIQKSDLDSKSVENCVCILRNLSYRLEAEVPPKYRQVLANIARLPGVGPPAESVGCFGFKKRKSDDNCDDLPI  501 (717)
T ss_pred             HHHHHHHHHHhccccchhHHHHHHHHhhcCchhhhhcCHhhhhHhhcccccccCCCcccccccccchhhhchhcccccCC
Confidence            444332                                                                          


Q ss_pred             ----------------------------CCCHHHHHHHHHHHHHhhcCChhhH----HH-HHhcCCHHHHHHhhcCCCHH
Q 015851          218 ----------------------------FTDTKVQRAAAGALRTLAFKNDENK----NQ-IVECNALPTLILMLRSEDSA  264 (399)
Q Consensus       218 ----------------------------~~~~~v~~~a~~~L~~L~~~~~~~~----~~-~~~~~~~~~L~~ll~~~~~~  264 (399)
                                                  +.++.+.++++++|-||+.+.....    .. +.+..++|.|+.+|+.++..
T Consensus       502 pe~~~~pkG~e~Lw~p~vVr~Yl~Ll~~s~n~~TlEasaGaLQNltA~~~~~~~~~~~~v~~kekgl~~l~~ll~~~~~~  581 (717)
T KOG1048|consen  502 PERATAPKGSEWLWHPSVVRPYLLLLALSKNDNTLEASAGALQNLTAGLWTWSEYMRGAVFRKEKGLPPLVELLRNDDSD  581 (717)
T ss_pred             cccccCCCCceeeecHHHHHHHHHHHHHhcchHHHHHhhhhHhhhhccCCcchhHHHhhhhhhccCccHHHHHHhcCCch
Confidence                                        1145667888888888887544322    22 35678899999999999999


Q ss_pred             HHHHHHHHHHHhhcCChhHHHHHHHCCCcHHHHHhhcCC------ChHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHH
Q 015851          265 IHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSC------CSESQREAALLLGQFAATDSDCKVHIVQRGAVRPL  338 (399)
Q Consensus       265 v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~------~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~v~~L  338 (399)
                      +...++.+|.|++.+ ..+ +.++..++++.|++.|...      +.++...+|.+|.|+...+..+.+.+.+.+.++.|
T Consensus       582 vv~s~a~~LrNls~d-~rn-k~ligk~a~~~lv~~Lp~~~~~~~~sedtv~~vc~tl~niv~~~~~nAkdl~~~~g~~kL  659 (717)
T KOG1048|consen  582 VVRSAAGALRNLSRD-IRN-KELIGKYAIPDLVRCLPGSGPSTSLSEDTVRAVCHTLNNIVRKNVLNAKDLLEIKGIPKL  659 (717)
T ss_pred             HHHHHHHHHhhhccC-chh-hhhhhcchHHHHHHhCcCCCCCcCchHHHHHHHHHhHHHHHHHhHHHHHHHHhccChHHH
Confidence            999999999999864 444 5566689999999999743      25788889999999998888999999999999999


Q ss_pred             HHhhCC-CCHHHHHHHHHHHHHhhccC
Q 015851          339 IEMLQS-PDVQLREMSAFALGRLAQVI  364 (399)
Q Consensus       339 ~~ll~~-~~~~v~~~a~~~L~~l~~~~  364 (399)
                      +-+..+ .++.+.++|...|..|=...
T Consensus       660 ~~I~~s~~S~k~~kaAs~vL~~lW~y~  686 (717)
T KOG1048|consen  660 RLISKSQHSPKEFKAASSVLDVLWQYK  686 (717)
T ss_pred             HHHhcccCCHHHHHHHHHHHHHHHHHH
Confidence            999976 46688888888888776443

>cd00020 ARM Armadillo/beta-catenin-like repeats

Probab=99.55  E-value=1.9e-13  Score=105.96  Aligned_cols=119  Identities=28%  Similarity=0.409  Sum_probs=110.8

Q ss_pred             HHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHHCCCcHHHHHhhcCCChHHHHHHHHHHHHhhccCh
Q 015851          244 QIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDS  323 (399)
Q Consensus       244 ~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~  323 (399)
                      .+++.|+++.++.++.+++..++..++++|++++...+.....+.+.|+++.++++|.++++.++..++++|+|++...+
T Consensus         2 ~~~~~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~   81 (120)
T cd00020           2 AVIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPE   81 (120)
T ss_pred             hHHHcCChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcH
Confidence            46788999999999999999999999999999998778888899999999999999999999999999999999998766


Q ss_pred             hhHHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhc
Q 015851          324 DCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQ  362 (399)
Q Consensus       324 ~~~~~l~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~  362 (399)
                      .....+.+.|+++.|++++.+.+..+++.++++|.+|+.
T Consensus        82 ~~~~~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~~  120 (120)
T cd00020          82 DNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLAS  120 (120)
T ss_pred             HHHHHHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhhC
Confidence            778888899999999999999999999999999999874

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.

>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells

Probab=99.55  E-value=5.5e-12  Score=121.29  Aligned_cols=266  Identities=20%  Similarity=0.240  Sum_probs=210.9

Q ss_pred             hHHHHHHHHHHHHHHcCChhHHHHHHhCCChHHHHhcccCCCCcccccCCCcchHHHHHHHHHHHHHhc-CChhhHHHHH
Q 015851           76 DRAAAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA-VKPEHQQLIV  154 (399)
Q Consensus        76 ~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~~~~~a~~~L~~l~-~~~~~~~~i~  154 (399)
                      +.+.-..++.+|..+.........  ..+..+.|...|.++++            .+|..+++.+.++. .+....+.+.
T Consensus        51 ~~e~v~~~~~iL~~~l~~~~~~~l--~~~~~~~L~~gL~h~~~------------~Vr~l~l~~l~~~~~~~~~~~~~~~  116 (503)
T PF10508_consen   51 NREQVELICDILKRLLSALSPDSL--LPQYQPFLQRGLTHPSP------------KVRRLALKQLGRIARHSEGAAQLLV  116 (503)
T ss_pred             ChHHHHHHHHHHHHHHhccCHHHH--HHHHHHHHHHHhcCCCH------------HHHHHHHHHHHHHhcCCHHHHHHhc
Confidence            555566788888888775333222  55678889999998877            89999999999999 4445566777


Q ss_pred             hcCcHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHh
Q 015851          155 DNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTL  234 (399)
Q Consensus       155 ~~~~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L  234 (399)
                      +.+.++.++..+.+.+.        ++...+..+|.+++...+.. ..+...+.++.|..++..++..+|..+..++.++
T Consensus       117 ~~~l~~~i~~~L~~~d~--------~Va~~A~~~L~~l~~~~~~~-~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i  187 (503)
T PF10508_consen  117 DNELLPLIIQCLRDPDL--------SVAKAAIKALKKLASHPEGL-EQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEI  187 (503)
T ss_pred             CccHHHHHHHHHcCCcH--------HHHHHHHHHHHHHhCCchhH-HHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHH
Confidence            89999999999988877        89999999999999655444 4466778899999999998889999999999999


Q ss_pred             hcCChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHHCCCcHHHHHhhcCC--Ch---HH-H
Q 015851          235 AFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSC--CS---ES-Q  308 (399)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~--~~---~v-~  308 (399)
                      +..+++....+.+.|+++.++..+.++|.-++.+++.+|..++. .+.+...+.+.|+++.|..++...  ++   .+ .
T Consensus       188 ~~~S~~~~~~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~-~~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l  266 (503)
T PF10508_consen  188 ASHSPEAAEAVVNSGLLDLLLKELDSDDILVQLNALELLSELAE-TPHGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLL  266 (503)
T ss_pred             HhcCHHHHHHHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHc-ChhHHHHHHhCCHHHHHHHHHhccccCCcccchhh
Confidence            98888889899999999999999999999999999999999998 577788999999999999999743  22   11 2


Q ss_pred             HHHHHHHHHhhccChhhHHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhccCCC
Q 015851          309 REAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQVITV  366 (399)
Q Consensus       309 ~~a~~~L~~l~~~~~~~~~~l~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~  366 (399)
                      .......++++...+..... ....++..+.+++.+.|+..+..|..+++.++.....
T Consensus       267 ~g~~~f~g~la~~~~~~v~~-~~p~~~~~l~~~~~s~d~~~~~~A~dtlg~igst~~G  323 (503)
T PF10508_consen  267 PGRMKFFGNLARVSPQEVLE-LYPAFLERLFSMLESQDPTIREVAFDTLGQIGSTVEG  323 (503)
T ss_pred             hhHHHHHHHHHhcChHHHHH-HHHHHHHHHHHHhCCCChhHHHHHHHHHHHHhCCHHH
Confidence            22335667777543322211 1134566777788889999999999999999966553

26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding

>cd00020 ARM Armadillo/beta-catenin-like repeats

Probab=99.55  E-value=2.3e-13  Score=105.49  Aligned_cols=118  Identities=36%  Similarity=0.504  Sum_probs=110.3

Q ss_pred             HHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChh
Q 015851          203 VRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPN  282 (399)
Q Consensus       203 ~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~  282 (399)
                      +.+.|+++.+++++.++++.++..++++|++++.+.++....+.+.|+++.++.++.++++.++..++++|++++...+.
T Consensus         3 ~~~~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~   82 (120)
T cd00020           3 VIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPED   82 (120)
T ss_pred             HHHcCChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHH
Confidence            56789999999999999999999999999999997789999999999999999999999999999999999999987767


Q ss_pred             HHHHHHHCCCcHHHHHhhcCCChHHHHHHHHHHHHhhc
Q 015851          283 IKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAA  320 (399)
Q Consensus       283 ~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~  320 (399)
                      ....+...|+++.+++++...+..+++.++++|.++++
T Consensus        83 ~~~~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~~  120 (120)
T cd00020          83 NKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLAS  120 (120)
T ss_pred             HHHHHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhhC
Confidence            77788899999999999999999999999999999873

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.

>PRK09687 putative lyase; Provisional

Probab=99.55  E-value=1.7e-12  Score=114.81  Aligned_cols=243  Identities=16%  Similarity=0.108  Sum_probs=180.1

Q ss_pred             hhhhHHHHhhhhhcchhhhHHHHHHHHHHHHHHcCChhHHHHHHhCCChHHHHhcccCCCCcccccCCCcchHHHHHHHH
Q 015851           58 EVSAQVNVLNTTFSWLEADRAAAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSA  137 (399)
Q Consensus        58 ~~~~~~~~L~~~l~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~~~~~a~  137 (399)
                      +...-++.|...+  .+++..+|..|++.|..+..          ...++.+..++.+++.            .+|..++
T Consensus        20 ~~~~~~~~L~~~L--~d~d~~vR~~A~~aL~~~~~----------~~~~~~l~~ll~~~d~------------~vR~~A~   75 (280)
T PRK09687         20 CKKLNDDELFRLL--DDHNSLKRISSIRVLQLRGG----------QDVFRLAIELCSSKNP------------IERDIGA   75 (280)
T ss_pred             HhhccHHHHHHHH--hCCCHHHHHHHHHHHHhcCc----------chHHHHHHHHHhCCCH------------HHHHHHH
Confidence            4444556666666  46678899999999987753          2235667778877766            8999999


Q ss_pred             HHHHHhcCChhhHHHHHhcCcHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhhc
Q 015851          138 FALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLE  217 (399)
Q Consensus       138 ~~L~~l~~~~~~~~~i~~~~~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~  217 (399)
                      ++|+.+......     ....++.|..++..+.+.       .++..++.+|++++......     ....+..+...+.
T Consensus        76 ~aLg~lg~~~~~-----~~~a~~~L~~l~~~D~d~-------~VR~~A~~aLG~~~~~~~~~-----~~~a~~~l~~~~~  138 (280)
T PRK09687         76 DILSQLGMAKRC-----QDNVFNILNNLALEDKSA-------CVRASAINATGHRCKKNPLY-----SPKIVEQSQITAF  138 (280)
T ss_pred             HHHHhcCCCccc-----hHHHHHHHHHHHhcCCCH-------HHHHHHHHHHhccccccccc-----chHHHHHHHHHhh
Confidence            999999843322     112567777775444433       89999999999997433211     1224555777788


Q ss_pred             CCCHHHHHHHHHHHHHhhcCChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHHCCCcHHHH
Q 015851          218 FTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVI  297 (399)
Q Consensus       218 ~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~  297 (399)
                      ++++.+|..++++|+.+..  +         ..++.|+.++.++++.||..|+.+|+.+...++         .+++.|+
T Consensus       139 D~~~~VR~~a~~aLg~~~~--~---------~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~~~---------~~~~~L~  198 (280)
T PRK09687        139 DKSTNVRFAVAFALSVIND--E---------AAIPLLINLLKDPNGDVRNWAAFALNSNKYDNP---------DIREAFV  198 (280)
T ss_pred             CCCHHHHHHHHHHHhccCC--H---------HHHHHHHHHhcCCCHHHHHHHHHHHhcCCCCCH---------HHHHHHH
Confidence            8999999999999987653  2         368999999999999999999999999943323         2477899


Q ss_pred             HhhcCCChHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhccCCCCcchhHHHHHh
Q 015851          298 GLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQVITVSVLPAILIFII  377 (399)
Q Consensus       298 ~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~  377 (399)
                      ..|.+.+..++..|+++|+.+-  ++         .++|.|++.+.+++  ++..++.+|+++...   ..+|.+..++.
T Consensus       199 ~~L~D~~~~VR~~A~~aLg~~~--~~---------~av~~Li~~L~~~~--~~~~a~~ALg~ig~~---~a~p~L~~l~~  262 (280)
T PRK09687        199 AMLQDKNEEIRIEAIIGLALRK--DK---------RVLSVLIKELKKGT--VGDLIIEAAGELGDK---TLLPVLDTLLY  262 (280)
T ss_pred             HHhcCCChHHHHHHHHHHHccC--Ch---------hHHHHHHHHHcCCc--hHHHHHHHHHhcCCH---hHHHHHHHHHh
Confidence            9999999999999999999863  22         35899999998766  677888888888864   45777666553

>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]

Probab=99.48  E-value=9.1e-12  Score=110.64  Aligned_cols=291  Identities=16%  Similarity=0.134  Sum_probs=209.5

Q ss_pred             hhHHHHhhhhhcchhhhHHHHHHHHHHHHHHcCC-hhHHHHHHhCCChHHHHhcccCCCCcccccCCCcchHHHHHHHHH
Q 015851           60 SAQVNVLNTTFSWLEADRAAAKRATHVLAELAKN-EEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAF  138 (399)
Q Consensus        60 ~~~~~~L~~~l~~~~~~~~~~~~a~~~L~~l~~~-~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~~~~~a~~  138 (399)
                      .++++.|.+..+  ++|.++..+..++|+|++.+ .++|..+.+.||-..++..|+..-..-     .+.+.+.-..+..
T Consensus        86 a~~le~Lrq~ps--S~d~ev~~Q~~RaLgNiCydn~E~R~a~~~lgGaqivid~L~~~cs~d-----~~ane~~~~v~~g  158 (604)
T KOG4500|consen   86 AEALELLRQTPS--SPDTEVHEQCFRALGNICYDNNENRAAFFNLGGAQIVIDVLKPYCSKD-----NPANEEYSAVAFG  158 (604)
T ss_pred             HHHHHHHHhCCC--CCcccHHHHHHHHHhhhhccCchhHHHHHhcCCceehHhhhccccccC-----CccHHHHHHHHHH
Confidence            456666777663  44778899999999999996 999999999999777776665421110     1123356667788


Q ss_pred             HHHHhc-CChhhHHHHHhcCcHHHHHHHHhccccCcc--------------------------cc------------ccH
Q 015851          139 ALGLLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNC--------------------------SR------------AVN  179 (399)
Q Consensus       139 ~L~~l~-~~~~~~~~i~~~~~i~~L~~~L~~~~~~~~--------------------------~~------------~~~  179 (399)
                      .|.|-. .+.+.+...++.|.++.|...+.-.-.+..                          +.            ...
T Consensus       159 ~l~Ny~l~~~~l~aq~~~~gVl~tL~~~~~I~~qNaa~~e~ll~~f~nlls~~~e~~~~~~~d~sl~~~l~~ll~~~v~~  238 (604)
T KOG4500|consen  159 VLHNYILDSRELRAQVADAGVLNTLAITYWIDWQNAALTEKLLAPFFNLLSFVCEMLYPFCKDCSLVFMLLQLLPSMVRE  238 (604)
T ss_pred             HHHHhhCCcHHHHHHHHhcccHHHHHHHhhcccccHHHHHHHHhccccHHHHHHHhhhhhhccchHHHHHHHHHHHhhcc
Confidence            888888 889999999999999977766543211000                          00            011


Q ss_pred             HHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhhcC-C-------CHHHHHHHHHHHHHhhcCChhhHHHHHhcC-C
Q 015851          180 SVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEF-T-------DTKVQRAAAGALRTLAFKNDENKNQIVECN-A  250 (399)
Q Consensus       180 ~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~-~-------~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~-~  250 (399)
                      ++.+.+..+|...+ .++.++-.+.+.|.+..++++++. .       .......++....-|..+ ++..+.+...+ +
T Consensus       239 d~~eM~feila~~a-end~Vkl~la~~gl~e~~~~lv~~~k~~t~k~d~~~l~k~~~el~vllltG-DeSMq~L~~~p~~  316 (604)
T KOG4500|consen  239 DIDEMIFEILAKAA-ENDLVKLSLAQNGLLEDSIDLVRNMKDFTKKTDMLNLFKRIAELDVLLLTG-DESMQKLHADPQF  316 (604)
T ss_pred             chhhHHHHHHHHHh-cCcceeeehhhcchHHHHHHHHHhcccccchHHHHHHHHhhhhHhhhhhcC-chHHHHHhcCcHH
Confidence            34444555555555 455566667777888888887765 1       123445566666666664 45555555544 8


Q ss_pred             HHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHHCCCcHHHHHhhcC-----CChHHHHHHHHHHHHhhccChhh
Q 015851          251 LPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSS-----CCSESQREAALLLGQFAATDSDC  325 (399)
Q Consensus       251 ~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~-----~~~~v~~~a~~~L~~l~~~~~~~  325 (399)
                      +..+.+++.+++......+.-+++|+++. +.....+++.+++..|+++|..     ++.+.+..++.+|.|+.- ...+
T Consensus       317 l~~~~sw~~S~d~~l~t~g~LaigNfaR~-D~~ci~~v~~~~~nkL~~~l~~~~~vdgnV~~qhA~lsALRnl~I-Pv~n  394 (604)
T KOG4500|consen  317 LDFLESWFRSDDSNLITMGSLAIGNFARR-DDICIQLVQKDFLNKLISCLMQEKDVDGNVERQHACLSALRNLMI-PVSN  394 (604)
T ss_pred             HHHHHHHhcCCchhHHHHHHHHHHhhhcc-chHHHHHHHHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHhccc-cCCc
Confidence            99999999999999999999999999986 4556788899999999999853     456788888999999984 4578


Q ss_pred             HHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhh
Q 015851          326 KVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLA  361 (399)
Q Consensus       326 ~~~l~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~  361 (399)
                      +..+...|+.+.++..++...|.+...-...++.+.
T Consensus       395 ka~~~~aGvteaIL~~lk~~~ppv~fkllgTlrM~~  430 (604)
T KOG4500|consen  395 KAHFAPAGVTEAILLQLKLASPPVTFKLLGTLRMIR  430 (604)
T ss_pred             hhhccccchHHHHHHHHHhcCCcchHHHHHHHHHHH
Confidence            889999999999999998877777766666665544

>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.45  E-value=7.7e-11  Score=106.23  Aligned_cols=287  Identities=14%  Similarity=0.156  Sum_probs=213.4

Q ss_pred             hhHHHHhhhhhcchhhhHHHHHHHHHHHHHHcCChhHHHHHHhCCChHHHHhcccCCCCcccccCCCcchHHHHHHHHHH
Q 015851           60 SAQVNVLNTTFSWLEADRAAAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFA  139 (399)
Q Consensus        60 ~~~~~~L~~~l~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~~~~~a~~~  139 (399)
                      .+.+++|.++.  +.++++.+...+..|.|++.+...|..++..|.+|.|..+|.++..              ..-|+..
T Consensus       344 ~~iveKL~klf--p~~h~dL~~~tl~LlfNlSFD~glr~KMv~~GllP~l~~ll~~d~~--------------~~iA~~~  407 (791)
T KOG1222|consen  344 NGIVEKLLKLF--PIQHPDLRKATLMLLFNLSFDSGLRPKMVNGGLLPHLASLLDSDTK--------------HGIALNM  407 (791)
T ss_pred             ccHHHHHHHhc--CCCCHHHHHHHHHHhhhccccccccHHHhhccchHHHHHHhCCccc--------------chhhhhh
Confidence            44566666666  5678889999999999999999999999999999999999987654              2358899


Q ss_pred             HHHhcCChhhHHHHHhcCcHHHHHHHHhccccCccccc-----------------------cHHHHH--------HHHHH
Q 015851          140 LGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRA-----------------------VNSVIR--------RAADA  188 (399)
Q Consensus       140 L~~l~~~~~~~~~i~~~~~i~~L~~~L~~~~~~~~~~~-----------------------~~~~~~--------~a~~~  188 (399)
                      |..++.+...+..+....+++.+++.+-..........                       ..-+.+        .....
T Consensus       408 lYh~S~dD~~K~MfayTdci~~lmk~v~~~~~~~vdl~lia~ciNl~lnkRNaQlvceGqgL~~LM~ra~k~~D~lLmK~  487 (791)
T KOG1222|consen  408 LYHLSCDDDAKAMFAYTDCIKLLMKDVLSGTGSEVDLALIALCINLCLNKRNAQLVCEGQGLDLLMERAIKSRDLLLMKV  487 (791)
T ss_pred             hhhhccCcHHHHHHHHHHHHHHHHHHHHhcCCceecHHHHHHHHHHHhccccceEEecCcchHHHHHHHhcccchHHHHH
Confidence            99999888888888888899998887766544321100                       000000        12235


Q ss_pred             HHHHhhcCchhHHHHHhcCChHHHHHhhcCCC-HHHHHHHHHHHHHhhcCChhhHHHHHhcCCHHHHHHhhcCC--CHHH
Q 015851          189 ITNLAHENSSIKTRVRMEGGIPPLVELLEFTD-TKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSE--DSAI  265 (399)
Q Consensus       189 L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~-~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~L~~ll~~~--~~~v  265 (399)
                      +.|++++....+.++...  +..|...++..+ ++....++++++||....-+....+-+...+|.+-..|...  ..++
T Consensus       488 vRniSqHeg~tqn~Fidy--vgdLa~i~~nd~~E~F~~EClGtlanL~v~dldw~~ilq~~~LvPw~k~~L~pga~eddL  565 (791)
T KOG1222|consen  488 VRNISQHEGATQNMFIDY--VGDLAGIAKNDNSESFGLECLGTLANLKVTDLDWAKILQSENLVPWMKTQLQPGADEDDL  565 (791)
T ss_pred             HHHhhhccchHHHHHHHH--HHHHHHHhhcCchHHHHHHHHHHHhhcccCCCCHHHHHhhccccHHHHHhhcCCccchhh
Confidence            556665555555555433  555555555544 66778889999999985556666666788999999988764  4467


Q ss_pred             HHHHHHHHHHhhcCChhHHHHHHHCCCcHHHHHhhcC--CChHHHHHHHHHHHHhhccChhhHHHHH-hcCCHHHHHHhh
Q 015851          266 HYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSS--CCSESQREAALLLGQFAATDSDCKVHIV-QRGAVRPLIEML  342 (399)
Q Consensus       266 ~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~--~~~~v~~~a~~~L~~l~~~~~~~~~~l~-~~g~v~~L~~ll  342 (399)
                      .....-+++.++.. ..+...+..+++++.++++|+.  .+.+......++...+..+ +..++.++ +...-..++.++
T Consensus       566 vL~~vi~~GT~a~d-~~cA~Lla~a~~i~tlieLL~a~QeDDEfV~QiiyVF~Q~l~H-e~tr~~miket~~~AylIDLM  643 (791)
T KOG1222|consen  566 VLQIVIACGTMARD-LDCARLLAPAKLIDTLIELLQACQEDDEFVVQIIYVFLQFLKH-ELTRRLMIKETALGAYLIDLM  643 (791)
T ss_pred             hhHHHHHhhhhhhh-hHHHHHhCccccHHHHHHHHHhhcccchHHHHHHHHHHHHHHH-HHHHHHHHhhccchHHHHHHH
Confidence            77788888888854 5666667788999999999984  4557888888888888765 55555555 466667899999


Q ss_pred             CCCCHHHHHHHHHHHHHhhccCCC
Q 015851          343 QSPDVQLREMSAFALGRLAQVITV  366 (399)
Q Consensus       343 ~~~~~~v~~~a~~~L~~l~~~~~~  366 (399)
                      ++.+.++|+.+-.+|--++.++.+
T Consensus       644 HDkN~eiRkVCDn~LdIiae~d~E  667 (791)
T KOG1222|consen  644 HDKNAEIRKVCDNALDIIAEHDKE  667 (791)
T ss_pred             hcccHHHHHHHHHHHHHHHHhhHH
Confidence            999999999999999999988764

>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]

Probab=99.44  E-value=7.9e-12  Score=119.28  Aligned_cols=245  Identities=18%  Similarity=0.218  Sum_probs=205.8

Q ss_pred             hHHHHHHHHHHHHHHcC--ChhHHHHHHhCCChHHHHhcccCCCCcccccCCCcchHHHHHHHHHHHHHhc-CChhhHHH
Q 015851           76 DRAAAKRATHVLAELAK--NEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA-VKPEHQQL  152 (399)
Q Consensus        76 ~~~~~~~a~~~L~~l~~--~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~~~~~a~~~L~~l~-~~~~~~~~  152 (399)
                      |+..|.+|+.-|+.+..  +++....|--..++|.|+.+|+++..           +++..+|+++|.+|+ -.|.....
T Consensus       181 Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n-----------~DIMl~AcRaltyl~evlP~S~a~  249 (1051)
T KOG0168|consen  181 DESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHN-----------FDIMLLACRALTYLCEVLPRSSAI  249 (1051)
T ss_pred             ChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhcccc-----------HHHHHHHHHHHHHHHhhccchhhe
Confidence            77888899988888655  46666666667789999999998765           389999999999999 78999999


Q ss_pred             HHhcCcHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHH
Q 015851          153 IVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALR  232 (399)
Q Consensus       153 i~~~~~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~  232 (399)
                      +++.++||.|+..|..-...       ++.++++.+|-.|++.++.   .+.+.|++...+.++..-+..+++.|+.+..
T Consensus       250 vV~~~aIPvl~~kL~~Ieyi-------DvAEQ~LqALE~iSR~H~~---AiL~AG~l~a~LsylDFFSi~aQR~Alaiaa  319 (1051)
T KOG0168|consen  250 VVDEHAIPVLLEKLLTIEYI-------DVAEQSLQALEKISRRHPK---AILQAGALSAVLSYLDFFSIHAQRVALAIAA  319 (1051)
T ss_pred             eecccchHHHHHhhhhhhhh-------HHHHHHHHHHHHHHhhccH---HHHhcccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999877665       8999999999999987774   5788999999999999999999999999999


Q ss_pred             HhhcCC-hhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhc---CChhHHHHHHHCCCcHHHHHhhcCCCh---
Q 015851          233 TLAFKN-DENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVH---SSPNIKKEVLAAGALQPVIGLLSSCCS---  305 (399)
Q Consensus       233 ~L~~~~-~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~---~~~~~~~~~~~~~~l~~L~~lL~~~~~---  305 (399)
                      |+|..- ++....+.+  .+|.|..+|+..+.+..+.++-++..++.   +.++..+.+..+|.+....+++...+.   
T Consensus       320 N~Cksi~sd~f~~v~e--alPlL~~lLs~~D~k~ies~~ic~~ri~d~f~h~~~kLdql~s~dLi~~~~qLlsvt~t~Ls  397 (1051)
T KOG0168|consen  320 NCCKSIRSDEFHFVME--ALPLLTPLLSYQDKKPIESVCICLTRIADGFQHGPDKLDQLCSHDLITNIQQLLSVTPTILS  397 (1051)
T ss_pred             HHHhcCCCccchHHHH--HHHHHHHHHhhccchhHHHHHHHHHHHHHhcccChHHHHHHhchhHHHHHHHHHhcCccccc
Confidence            999742 233344444  59999999999999999999999999884   346667888899999999999875432   


Q ss_pred             -HHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHhhC
Q 015851          306 -ESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQ  343 (399)
Q Consensus       306 -~v~~~a~~~L~~l~~~~~~~~~~l~~~g~v~~L~~ll~  343 (399)
                       .+..-.+..+..|+++.+...+.+...++...|..++.
T Consensus       398 ~~~~~~vIrmls~msS~~pl~~~tl~k~~I~~~L~~il~  436 (1051)
T KOG0168|consen  398 NGTYTGVIRMLSLMSSGSPLLFRTLLKLDIADTLKRILQ  436 (1051)
T ss_pred             ccchhHHHHHHHHHccCChHHHHHHHHhhHHHHHHHHHh
Confidence             44555677888888888999999999999999999884

>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=99.41  E-value=4.1e-11  Score=105.19  Aligned_cols=188  Identities=21%  Similarity=0.230  Sum_probs=166.2

Q ss_pred             chhhhHHHHHHHHHHHHHHcCChhHHHHHHhCCChHHHHhcccCCCCcccccCCCcchHHHHHHHHHHHHHhc-CChhhH
Q 015851           72 WLEADRAAAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA-VKPEHQ  150 (399)
Q Consensus        72 ~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~~~~~a~~~L~~l~-~~~~~~  150 (399)
                      .++.+.+.+..|+.-|-.++.+-++...+...|++..++.++++.+.            .+|..|+++++..+ .+|..+
T Consensus        92 ~~s~~le~ke~ald~Le~lve~iDnAndl~~~ggl~~ll~~l~~~~~------------~lR~~Aa~Vigt~~qNNP~~Q  159 (342)
T KOG2160|consen   92 SSSVDLEDKEDALDNLEELVEDIDNANDLISLGGLVPLLGYLENSDA------------ELRELAARVIGTAVQNNPKSQ  159 (342)
T ss_pred             cccCCHHHHHHHHHHHHHHHHhhhhHHhHhhccCHHHHHHHhcCCcH------------HHHHHHHHHHHHHHhcCHHHH
Confidence            45677888999999999999998999999999999999999998887            89999999999999 899999


Q ss_pred             HHHHhcCcHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhhcC--CCHHHHHHHH
Q 015851          151 QLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEF--TDTKVQRAAA  228 (399)
Q Consensus       151 ~~i~~~~~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~--~~~~v~~~a~  228 (399)
                      +.+++.|+++.|+..+.+..+.       .++..++.+++++..+++.....+...++...|...+.+  .+...++.++
T Consensus       160 e~v~E~~~L~~Ll~~ls~~~~~-------~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~  232 (342)
T KOG2160|consen  160 EQVIELGALSKLLKILSSDDPN-------TVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKAL  232 (342)
T ss_pred             HHHHHcccHHHHHHHHccCCCc-------hHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHH
Confidence            9999999999999999966654       788999999999999999999999999999999999999  4578899999


Q ss_pred             HHHHHhhcCChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhc
Q 015851          229 GALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVH  278 (399)
Q Consensus       229 ~~L~~L~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~  278 (399)
                      ..+..|..........+...++...+..+....+.++.+.++.++..+..
T Consensus       233 ~Ll~~Ll~~~~s~~d~~~~~~f~~~~~~l~~~l~~~~~e~~l~~~l~~l~  282 (342)
T KOG2160|consen  233 FLLSLLLQEDKSDEDIASSLGFQRVLENLISSLDFEVNEAALTALLSLLS  282 (342)
T ss_pred             HHHHHHHHhhhhhhhHHHHhhhhHHHHHHhhccchhhhHHHHHHHHHHHH
Confidence            99999998666666666667777777788888888899988888877653

>PRK09687 putative lyase; Provisional

Probab=99.39  E-value=4.2e-11  Score=105.97  Aligned_cols=212  Identities=15%  Similarity=0.097  Sum_probs=161.5

Q ss_pred             CChHHHHhcccCCCCcccccCCCcchHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHHHhccccCccccccHHHHH
Q 015851          104 GAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIR  183 (399)
Q Consensus       104 g~l~~L~~lL~~~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~~~i~~L~~~L~~~~~~~~~~~~~~~~~  183 (399)
                      --++.|..+|.+.+.            .+|..+.++|..+..          ...++.+..++++.+.        .++.
T Consensus        23 ~~~~~L~~~L~d~d~------------~vR~~A~~aL~~~~~----------~~~~~~l~~ll~~~d~--------~vR~   72 (280)
T PRK09687         23 LNDDELFRLLDDHNS------------LKRISSIRVLQLRGG----------QDVFRLAIELCSSKNP--------IERD   72 (280)
T ss_pred             ccHHHHHHHHhCCCH------------HHHHHHHHHHHhcCc----------chHHHHHHHHHhCCCH--------HHHH
Confidence            457788899988777            788899999988863          2256777777776655        8999


Q ss_pred             HHHHHHHHHhhcCchhHHHHHhcCChHHHHHh-hcCCCHHHHHHHHHHHHHhhcCChhhHHHHHhcCCHHHHHHhhcCCC
Q 015851          184 RAADAITNLAHENSSIKTRVRMEGGIPPLVEL-LEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSED  262 (399)
Q Consensus       184 ~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~l-l~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~L~~ll~~~~  262 (399)
                      .++++|+.+-.....      ....++.|..+ ++++++.|+..|+.+|+++.......     ...+++.+...+.+++
T Consensus        73 ~A~~aLg~lg~~~~~------~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~-----~~~a~~~l~~~~~D~~  141 (280)
T PRK09687         73 IGADILSQLGMAKRC------QDNVFNILNNLALEDKSACVRASAINATGHRCKKNPLY-----SPKIVEQSQITAFDKS  141 (280)
T ss_pred             HHHHHHHhcCCCccc------hHHHHHHHHHHHhcCCCHHHHHHHHHHHhccccccccc-----chHHHHHHHHHhhCCC
Confidence            999999998742211      22456777766 67788999999999999997532211     1224566777888889


Q ss_pred             HHHHHHHHHHHHHhhcCChhHHHHHHHCCCcHHHHHhhcCCChHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHhh
Q 015851          263 SAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEML  342 (399)
Q Consensus       263 ~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~v~~L~~ll  342 (399)
                      +.||..++++|+.+.  ++.         .++.|+.+|.++++.++..|+.+|+.+...++         .+++.|+.++
T Consensus       142 ~~VR~~a~~aLg~~~--~~~---------ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~~~---------~~~~~L~~~L  201 (280)
T PRK09687        142 TNVRFAVAFALSVIN--DEA---------AIPLLINLLKDPNGDVRNWAAFALNSNKYDNP---------DIREAFVAML  201 (280)
T ss_pred             HHHHHHHHHHHhccC--CHH---------HHHHHHHHhcCCCHHHHHHHHHHHhcCCCCCH---------HHHHHHHHHh
Confidence            999999999998773  222         58999999999999999999999999842222         3467899999


Q ss_pred             CCCCHHHHHHHHHHHHHhhccCCCCcchhHHHHHhhc
Q 015851          343 QSPDVQLREMSAFALGRLAQVITVSVLPAILIFIIIN  379 (399)
Q Consensus       343 ~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~  379 (399)
                      .+.++.||..|+++|+.+..   ...+|.++..+...
T Consensus       202 ~D~~~~VR~~A~~aLg~~~~---~~av~~Li~~L~~~  235 (280)
T PRK09687        202 QDKNEEIRIEAIIGLALRKD---KRVLSVLIKELKKG  235 (280)
T ss_pred             cCCChHHHHHHHHHHHccCC---hhHHHHHHHHHcCC
Confidence            99999999999999998653   34577777766443

>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments

Probab=99.37  E-value=2.9e-10  Score=104.75  Aligned_cols=271  Identities=18%  Similarity=0.139  Sum_probs=192.9

Q ss_pred             hhhHHHHHHHHHHHHHHcCC-hhHHHHHHhCCChHHHHhcccCCCCcccccCCCcchHHHHHHHHHHHHHhcCChhhHHH
Q 015851           74 EADRAAAKRATHVLAELAKN-EEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQL  152 (399)
Q Consensus        74 ~~~~~~~~~a~~~L~~l~~~-~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~  152 (399)
                      .+|..+...|+..|..+... +.........-.+..+...+.+.++.           ..+.-++.+|..|...+++|..
T Consensus       112 ~~d~~i~~~a~~iLt~l~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~-----------~~~~~~v~~L~~LL~~~~~R~~  180 (429)
T cd00256         112 RQDQFIVHMSFSILAKLACFGLAKMEGSDLDYYFNWLKEQLNNITNN-----------DYVQTAARCLQMLLRVDEYRFA  180 (429)
T ss_pred             CCchhHHHHHHHHHHHHHhcCccccchhHHHHHHHHHHHHhhccCCc-----------chHHHHHHHHHHHhCCchHHHH
Confidence            35677899999999998763 33211111111334555566554321           5666888999999999999999


Q ss_pred             HHhcCcHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhhcCCC-HHHHHHHHHHH
Q 015851          153 IVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTD-TKVQRAAAGAL  231 (399)
Q Consensus       153 i~~~~~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~-~~v~~~a~~~L  231 (399)
                      +.+.++++.|+.+|......      .+++..++.++|-|+...+ ........+.++.++.+++... +++.+.++.+|
T Consensus       181 f~~~~~v~~L~~~L~~~~~~------~Ql~Y~~ll~lWlLSF~~~-~~~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l  253 (429)
T cd00256         181 FVLADGVPTLVKLLSNATLG------FQLQYQSIFCIWLLTFNPH-AAEVLKRLSLIQDLSDILKESTKEKVIRIVLAIF  253 (429)
T ss_pred             HHHccCHHHHHHHHhhcccc------HHHHHHHHHHHHHHhccHH-HHHhhccccHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence            99999999999999865421      1899999999999995444 5555666799999999998755 88999999999


Q ss_pred             HHhhcCC------hhhHHHHHhcCCHHHHHHhhcC--CCHHHHHHHHHH-------HHHhhcCChhH-------------
Q 015851          232 RTLAFKN------DENKNQIVECNALPTLILMLRS--EDSAIHYEAVGV-------IGNLVHSSPNI-------------  283 (399)
Q Consensus       232 ~~L~~~~------~~~~~~~~~~~~~~~L~~ll~~--~~~~v~~~a~~~-------L~~l~~~~~~~-------------  283 (399)
                      .|+....      ......+++.|.++.+-.+...  .|+++....-..       +..++. .+++             
T Consensus       254 ~Nll~~~~~~~~~~~~~~~mv~~~l~~~l~~L~~rk~~DedL~edl~~L~e~L~~~~k~lts-fD~Y~~El~sg~L~WSp  332 (429)
T cd00256         254 RNLISKRVDREVKKTAALQMVQCKVLKTLQSLEQRKYDDEDLTDDLKFLTEELKNSVQDLSS-FDEYKSELRSGRLHWSP  332 (429)
T ss_pred             HHHhhcccccchhhhHHHHHHHcChHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHcCC-HHHHHHHHhcCCccCCC
Confidence            9999732      1234556777666655444433  355544322211       111211 1111             


Q ss_pred             -----------HHHHHHCC--CcHHHHHhhc-CCChHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHhhCCCCHHH
Q 015851          284 -----------KKEVLAAG--ALQPVIGLLS-SCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQL  349 (399)
Q Consensus       284 -----------~~~~~~~~--~l~~L~~lL~-~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~v~~L~~ll~~~~~~v  349 (399)
                                 ...+-+.+  ++..|+++|. +.++.+..-||.=|+.++...|.++..+.+.|+=..+.+++.++|++|
T Consensus       333 ~H~se~FW~EN~~kf~~~~~~llk~L~~iL~~s~d~~~laVAc~Dige~vr~~P~gr~i~~~lg~K~~vM~Lm~h~d~~V  412 (429)
T cd00256         333 VHKSEKFWRENADRLNEKNYELLKILIHLLETSVDPIILAVACHDIGEYVRHYPRGKDVVEQLGGKQRVMRLLNHEDPNV  412 (429)
T ss_pred             CCCCchHHHHHHHHHHhcchHHHHHHHHHHhcCCCcceeehhhhhHHHHHHHCccHHHHHHHcCcHHHHHHHhcCCCHHH
Confidence                       12222322  5788899995 566777888999999999988999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhcc
Q 015851          350 REMSAFALGRLAQV  363 (399)
Q Consensus       350 ~~~a~~~L~~l~~~  363 (399)
                      +..|..|+..+.-+
T Consensus       413 r~eAL~avQklm~~  426 (429)
T cd00256         413 RYEALLAVQKLMVH  426 (429)
T ss_pred             HHHHHHHHHHHHHh
Confidence            99999999987543

The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.

>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.34  E-value=1.1e-09  Score=108.87  Aligned_cols=304  Identities=18%  Similarity=0.158  Sum_probs=204.7

Q ss_pred             chHHHhHhhhhhhHHHHhhhhhcchhhhHHHHHHHHHHHHHHcCC-hhHHHHHHhCCChHHHHhcccCCCCcccccCCCc
Q 015851           49 SDARQALLSEVSAQVNVLNTTFSWLEADRAAAKRATHVLAELAKN-EEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKP  127 (399)
Q Consensus        49 ~d~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~~a~~~L~~l~~~-~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~  127 (399)
                      .+..+...+..|.++..+...+..  .|...-..++.+|..++.. |....... ..++..-++...+.+.         
T Consensus       194 ~~~~~~~~~llP~~l~vl~~~i~~--~d~~~a~~~l~~l~El~e~~pk~l~~~l-~~ii~~~l~Ia~n~~l---------  261 (1075)
T KOG2171|consen  194 KSEVDKFRDLLPSLLNVLQEVIQD--GDDDAAKSALEALIELLESEPKLLRPHL-SQIIQFSLEIAKNKEL---------  261 (1075)
T ss_pred             hHHHHHHHHHhHHHHHHhHhhhhc--cchHHHHHHHHHHHHHHhhchHHHHHHH-HHHHHHHHHHhhcccc---------
Confidence            344445556777777777777743  3333456788889888884 55443322 2345566666665443         


Q ss_pred             chHHHHHHHHHHHHHhcCC-hhhHHHHHh--cCcHHHHHHHHhccccC--------ccccccHHHHHHHHHHHHHHhhcC
Q 015851          128 FEHEVEKGSAFALGLLAVK-PEHQQLIVD--NGALSHLVNLLKRHMDS--------NCSRAVNSVIRRAADAITNLAHEN  196 (399)
Q Consensus       128 ~~~~~~~~a~~~L~~l~~~-~~~~~~i~~--~~~i~~L~~~L~~~~~~--------~~~~~~~~~~~~a~~~L~~l~~~~  196 (399)
                       +..+|..|+.+|..++.+ |...+.-..  ...++.++.++....++        ...+....--..+..+|-.++.+-
T Consensus       262 -~~~~R~~ALe~ivs~~e~Ap~~~k~~~~~~~~lv~~~l~~mte~~~D~ew~~~d~~ded~~~~~~~~A~~~lDrlA~~L  340 (1075)
T KOG2171|consen  262 -ENSIRHLALEFLVSLSEYAPAMCKKLALLGHTLVPVLLAMMTEEEDDDEWSNEDDLDEDDEETPYRAAEQALDRLALHL  340 (1075)
T ss_pred             -cHHHHHHHHHHHHHHHHhhHHHhhhchhhhccHHHHHHHhcCCcccchhhccccccccccccCcHHHHHHHHHHHHhcC
Confidence             458999999999999944 333332222  22455555555433222        000000123455666777777543


Q ss_pred             chhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHh
Q 015851          197 SSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNL  276 (399)
Q Consensus       197 ~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l  276 (399)
                      +..   .+-.-.++.+-.++.+.++.-|.+++.+|+.++.+..+.....+. .+++..+..|+++++.||..|+.+++.+
T Consensus       341 ~g~---~v~p~~~~~l~~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~~l~-~Il~~Vl~~l~DphprVr~AA~naigQ~  416 (1075)
T KOG2171|consen  341 GGK---QVLPPLFEALEAMLQSTEWKERHAALLALSVIAEGCSDVMIGNLP-KILPIVLNGLNDPHPRVRYAALNAIGQM  416 (1075)
T ss_pred             Chh---hehHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcccHHHHHHHHH-HHHHHHHhhcCCCCHHHHHHHHHHHHhh
Confidence            321   122345677778899999999999999999999877666555444 4888999999999999999999999999


Q ss_pred             hcCChhHHHHHHHCCCcHHHHHhhcC-CChHHHHHHHHHHHHhhccChh-hHHHHHhcCCHH-HHHHhhCCCCHHHHHHH
Q 015851          277 VHSSPNIKKEVLAAGALQPVIGLLSS-CCSESQREAALLLGQFAATDSD-CKVHIVQRGAVR-PLIEMLQSPDVQLREMS  353 (399)
Q Consensus       277 ~~~~~~~~~~~~~~~~l~~L~~lL~~-~~~~v~~~a~~~L~~l~~~~~~-~~~~l~~~g~v~-~L~~ll~~~~~~v~~~a  353 (399)
                      +.+-....+.-...-+++.|+..+.+ .+++++.+|+.++-|+++..+. ....+. .+++. .+.-++.++.+.+++.+
T Consensus       417 stdl~p~iqk~~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~~~l~pYL-d~lm~~~l~~L~~~~~~~v~e~v  495 (1075)
T KOG2171|consen  417 STDLQPEIQKKHHERLPPALIALLDSTQNVRVQAHAAAALVNFSEECDKSILEPYL-DGLMEKKLLLLLQSSKPYVQEQA  495 (1075)
T ss_pred             hhhhcHHHHHHHHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcHHHHHHHH-HHHHHHHHHHHhcCCchhHHHHH
Confidence            97655555555666788899998875 5669999999999999865432 222222 34555 45555578899999999


Q ss_pred             HHHHHHhhccCCCCcch
Q 015851          354 AFALGRLAQVITVSVLP  370 (399)
Q Consensus       354 ~~~L~~l~~~~~~~~~~  370 (399)
                      +.+|+..|.....++.|
T Consensus       496 vtaIasvA~AA~~~F~p  512 (1075)
T KOG2171|consen  496 VTAIASVADAAQEKFIP  512 (1075)
T ss_pred             HHHHHHHHHHHhhhhHh
Confidence            99999999999886443

>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.33  E-value=5.1e-10  Score=111.08  Aligned_cols=315  Identities=16%  Similarity=0.162  Sum_probs=213.8

Q ss_pred             hhhhHHHHhhhhhcchhhhHHHHHHHHHHHHHHcCChhHHHHHHhCCChHHHHhcccCCCCcccccCCCcchHHHHHHHH
Q 015851           58 EVSAQVNVLNTTFSWLEADRAAAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSA  137 (399)
Q Consensus        58 ~~~~~~~~L~~~l~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~~~~~a~  137 (399)
                      .||.+++.|....  +++++..|+-|+.+|..+.....+...-.-..+.+.|.+.+.+++.            .+|..++
T Consensus       115 ~WPell~~L~q~~--~S~~~~~rE~al~il~s~~~~~~~~~~~~~~~l~~lf~q~~~d~s~------------~vr~~a~  180 (1075)
T KOG2171|consen  115 KWPELLQFLFQST--KSPNPSLRESALLILSSLPETFGNTLQPHLDDLLRLFSQTMTDPSS------------PVRVAAV  180 (1075)
T ss_pred             chHHHHHHHHHHh--cCCCcchhHHHHHHHHhhhhhhccccchhHHHHHHHHHHhccCCcc------------hHHHHHH
Confidence            5899999998876  5778889999999999998753322211111345556666666555            4889999


Q ss_pred             HHHHHhc-CC---hhhHHHHHhcCcHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHH
Q 015851          138 FALGLLA-VK---PEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLV  213 (399)
Q Consensus       138 ~~L~~l~-~~---~~~~~~i~~~~~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~  213 (399)
                      ++++.++ ..   ..-+..+..  .+|.++..+....+..+.    +....++.+|..+....+..-.... ..++...+
T Consensus       181 rA~~a~~~~~~~~~~~~~~~~~--llP~~l~vl~~~i~~~d~----~~a~~~l~~l~El~e~~pk~l~~~l-~~ii~~~l  253 (1075)
T KOG2171|consen  181 RALGAFAEYLENNKSEVDKFRD--LLPSLLNVLQEVIQDGDD----DAAKSALEALIELLESEPKLLRPHL-SQIIQFSL  253 (1075)
T ss_pred             HHHHHHHHHhccchHHHHHHHH--HhHHHHHHhHhhhhccch----HHHHHHHHHHHHHHhhchHHHHHHH-HHHHHHHH
Confidence            9999998 43   333333333  678788877765443322    4566788888888865554322121 23455666


Q ss_pred             HhhcCC--CHHHHHHHHHHHHHhhcCChhhHHHHH--hcCCHHHHHHhhcCC--C--------------HHHHHHHHHHH
Q 015851          214 ELLEFT--DTKVQRAAAGALRTLAFKNDENKNQIV--ECNALPTLILMLRSE--D--------------SAIHYEAVGVI  273 (399)
Q Consensus       214 ~ll~~~--~~~v~~~a~~~L~~L~~~~~~~~~~~~--~~~~~~~L~~ll~~~--~--------------~~v~~~a~~~L  273 (399)
                      ....+.  ++.+|..|+.+|..++...+...+..-  -...++.++.++...  |              ..-...|..+|
T Consensus       254 ~Ia~n~~l~~~~R~~ALe~ivs~~e~Ap~~~k~~~~~~~~lv~~~l~~mte~~~D~ew~~~d~~ded~~~~~~~~A~~~l  333 (1075)
T KOG2171|consen  254 EIAKNKELENSIRHLALEFLVSLSEYAPAMCKKLALLGHTLVPVLLAMMTEEEDDDEWSNEDDLDEDDEETPYRAAEQAL  333 (1075)
T ss_pred             HHhhcccccHHHHHHHHHHHHHHHHhhHHHhhhchhhhccHHHHHHHhcCCcccchhhccccccccccccCcHHHHHHHH
Confidence            666665  478999999999999985443333222  234567777766421  1              12456677788


Q ss_pred             HHhhcCChhHHHHHHHCCCcHHHHHhhcCCChHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHhhCCCCHHHHHHH
Q 015851          274 GNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMS  353 (399)
Q Consensus       274 ~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~v~~L~~ll~~~~~~v~~~a  353 (399)
                      -.++.+-+...   +-.-+++.+-.++++.++.-|..|+.+|+-++.+..+.....++ .+++.+++.+.++++.||.+|
T Consensus       334 DrlA~~L~g~~---v~p~~~~~l~~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~~l~-~Il~~Vl~~l~DphprVr~AA  409 (1075)
T KOG2171|consen  334 DRLALHLGGKQ---VLPPLFEALEAMLQSTEWKERHAALLALSVIAEGCSDVMIGNLP-KILPIVLNGLNDPHPRVRYAA  409 (1075)
T ss_pred             HHHHhcCChhh---ehHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcccHHHHHHHHH-HHHHHHHhhcCCCCHHHHHHH
Confidence            88775533221   11224666777788999999999999999999887776665443 478999999999999999999


Q ss_pred             HHHHHHhhccCCCC-------cchhHHHHHhhccccHHHHHHHHhhhHhhh
Q 015851          354 AFALGRLAQVITVS-------VLPAILIFIIINECQLEVLAFVLSEMVLLF  397 (399)
Q Consensus       354 ~~~L~~l~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  397 (399)
                      +.+++.++.+-...       .+|..+...+...++.++.+..-.+++..+
T Consensus       410 ~naigQ~stdl~p~iqk~~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~  460 (1075)
T KOG2171|consen  410 LNAIGQMSTDLQPEIQKKHHERLPPALIALLDSTQNVRVQAHAAAALVNFS  460 (1075)
T ss_pred             HHHHHhhhhhhcHHHHHHHHHhccHHHHHHhcccCchHHHHHHHHHHHHHH
Confidence            99999999888763       344434444556667788888877777654

>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.32  E-value=7.6e-10  Score=99.95  Aligned_cols=306  Identities=17%  Similarity=0.179  Sum_probs=228.6

Q ss_pred             hhhhhhHHHHhhhhhcchhhhHHHHHHHHHHHHHHcCChhHHHHHHhCCChHHHHhcccCCCCcccccCCCcchHHHHHH
Q 015851           56 LSEVSAQVNVLNTTFSWLEADRAAAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKG  135 (399)
Q Consensus        56 ~~~~~~~~~~L~~~l~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~~~~~  135 (399)
                      -.....++.+|+..+.  -++.+........|..++--.++...+.+.|++..|+.++...++            +++..
T Consensus       299 KMrrkniV~mLVKaLd--r~n~~Ll~lv~~FLkKLSIf~eNK~~M~~~~iveKL~klfp~~h~------------dL~~~  364 (791)
T KOG1222|consen  299 KMRRKNIVAMLVKALD--RSNSSLLTLVIKFLKKLSIFDENKIVMEQNGIVEKLLKLFPIQHP------------DLRKA  364 (791)
T ss_pred             HHHHHhHHHHHHHHHc--ccchHHHHHHHHHHHHhhhhccchHHHHhccHHHHHHHhcCCCCH------------HHHHH
Confidence            3455667888888874  334555666777788887777888889999999999999988777            89999


Q ss_pred             HHHHHHHhcCChhhHHHHHhcCcHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHh
Q 015851          136 SAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVEL  215 (399)
Q Consensus       136 a~~~L~~l~~~~~~~~~i~~~~~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~l  215 (399)
                      .++.|.|++.+...+..++..|.+|.+..++.+....          ..++..++.++ -++..+.++.....++.++..
T Consensus       365 tl~LlfNlSFD~glr~KMv~~GllP~l~~ll~~d~~~----------~iA~~~lYh~S-~dD~~K~MfayTdci~~lmk~  433 (791)
T KOG1222|consen  365 TLMLLFNLSFDSGLRPKMVNGGLLPHLASLLDSDTKH----------GIALNMLYHLS-CDDDAKAMFAYTDCIKLLMKD  433 (791)
T ss_pred             HHHHhhhccccccccHHHhhccchHHHHHHhCCcccc----------hhhhhhhhhhc-cCcHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999877543          45777888888 577788889889999999887


Q ss_pred             hcC-CCHHHHHHHHHHHHHhhcCChhhHHHHHhcCCHHHHHHh-hcCCCHHHHHHHHHHHHHhhcCChhHHHHHHHCCCc
Q 015851          216 LEF-TDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILM-LRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGAL  293 (399)
Q Consensus       216 l~~-~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~L~~l-l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l  293 (399)
                      +-+ .+.++-...+...-||+. +..+.+.+++..++..|+.. +.+.++-+    ...+.|++.+.......++  +.+
T Consensus       434 v~~~~~~~vdl~lia~ciNl~l-nkRNaQlvceGqgL~~LM~ra~k~~D~lL----mK~vRniSqHeg~tqn~Fi--dyv  506 (791)
T KOG1222|consen  434 VLSGTGSEVDLALIALCINLCL-NKRNAQLVCEGQGLDLLMERAIKSRDLLL----MKVVRNISQHEGATQNMFI--DYV  506 (791)
T ss_pred             HHhcCCceecHHHHHHHHHHHh-ccccceEEecCcchHHHHHHHhcccchHH----HHHHHHhhhccchHHHHHH--HHH
Confidence            654 345665566666678887 77888888998888888764 45555432    3467788765443434444  345


Q ss_pred             HHHHHhhcC-CChHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHhhCC--CCHHHHHHHHHHHHHhhccCC-----
Q 015851          294 QPVIGLLSS-CCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQS--PDVQLREMSAFALGRLAQVIT-----  365 (399)
Q Consensus       294 ~~L~~lL~~-~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~v~~L~~ll~~--~~~~v~~~a~~~L~~l~~~~~-----  365 (399)
                      ..|...+.. .+.....++.++++|+.-.+-+-...+.+.+++|.+...+..  ...+++-..+.+++.++.+..     
T Consensus       507 gdLa~i~~nd~~E~F~~EClGtlanL~v~dldw~~ilq~~~LvPw~k~~L~pga~eddLvL~~vi~~GT~a~d~~cA~Ll  586 (791)
T KOG1222|consen  507 GDLAGIAKNDNSESFGLECLGTLANLKVTDLDWAKILQSENLVPWMKTQLQPGADEDDLVLQIVIACGTMARDLDCARLL  586 (791)
T ss_pred             HHHHHHhhcCchHHHHHHHHHHHhhcccCCCCHHHHHhhccccHHHHHhhcCCccchhhhhHHHHHhhhhhhhhHHHHHh
Confidence            666666664 445788899999999987666777788889999999999964  234466666677777776544     


Q ss_pred             --CCcchhHHHHHhhccccHHHHHHHHhhh
Q 015851          366 --VSVLPAILIFIIINECQLEVLAFVLSEM  393 (399)
Q Consensus       366 --~~~~~~~~~~~~~~~~~~~~~~~~l~~~  393 (399)
                        .++++.++.++......+++..+++.-|
T Consensus       587 a~a~~i~tlieLL~a~QeDDEfV~QiiyVF  616 (791)
T KOG1222|consen  587 APAKLIDTLIELLQACQEDDEFVVQIIYVF  616 (791)
T ss_pred             CccccHHHHHHHHHhhcccchHHHHHHHHH
Confidence              4577888887776666677666665533

>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=99.28  E-value=6.1e-10  Score=97.91  Aligned_cols=183  Identities=19%  Similarity=0.178  Sum_probs=161.0

Q ss_pred             HHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhhcCchhHHHHHhcCCh
Q 015851          130 HEVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGI  209 (399)
Q Consensus       130 ~~~~~~a~~~L~~l~~~~~~~~~i~~~~~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i  209 (399)
                      ++-+..|..-|..++.+-++...++..|+...++.++++.+.        ++++.|+|+|+.+++.+|..+..+.+.|++
T Consensus        97 le~ke~ald~Le~lve~iDnAndl~~~ggl~~ll~~l~~~~~--------~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L  168 (342)
T KOG2160|consen   97 LEDKEDALDNLEELVEDIDNANDLISLGGLVPLLGYLENSDA--------ELRELAARVIGTAVQNNPKSQEQVIELGAL  168 (342)
T ss_pred             HHHHHHHHHHHHHHHHhhhhHHhHhhccCHHHHHHHhcCCcH--------HHHHHHHHHHHHHHhcCHHHHHHHHHcccH
Confidence            466788888899999889999999999999999998888877        999999999999999999999999999999


Q ss_pred             HHHHHhhcCCC-HHHHHHHHHHHHHhhcCChhhHHHHHhcCCHHHHHHhhcC--CCHHHHHHHHHHHHHhhcCChhHHHH
Q 015851          210 PPLVELLEFTD-TKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRS--EDSAIHYEAVGVIGNLVHSSPNIKKE  286 (399)
Q Consensus       210 ~~L~~ll~~~~-~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~L~~ll~~--~~~~v~~~a~~~L~~l~~~~~~~~~~  286 (399)
                      +.|+..+.+++ ..++..|+.+++.+...++.+...+...++...|...+++  .+..++..++..++.+..........
T Consensus       169 ~~Ll~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~d~  248 (342)
T KOG2160|consen  169 SKLLKILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDEDI  248 (342)
T ss_pred             HHHHHHHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhhhH
Confidence            99999998765 5788999999999999999999999999999999999998  56788999999999999766665565


Q ss_pred             HHHCCCcHHHHHhhcCCChHHHHHHHHHHHHhhc
Q 015851          287 VLAAGALQPVIGLLSSCCSESQREAALLLGQFAA  320 (399)
Q Consensus       287 ~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~  320 (399)
                      +...++...+..+....+..+.+.+..++..+..
T Consensus       249 ~~~~~f~~~~~~l~~~l~~~~~e~~l~~~l~~l~  282 (342)
T KOG2160|consen  249 ASSLGFQRVLENLISSLDFEVNEAALTALLSLLS  282 (342)
T ss_pred             HHHhhhhHHHHHHhhccchhhhHHHHHHHHHHHH
Confidence            6667777888888888888899888887766653

>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional

Probab=99.25  E-value=2.2e-09  Score=110.67  Aligned_cols=257  Identities=21%  Similarity=0.203  Sum_probs=157.8

Q ss_pred             hHHHHhhhhhcchhhhHHHHHHHHHHHHHHcCChhHHHHHHhCCChHHHHhcccCCCCcccccCCCcchHHHHHHHHHHH
Q 015851           61 AQVNVLNTTFSWLEADRAAAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFAL  140 (399)
Q Consensus        61 ~~~~~L~~~l~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~~~~~a~~~L  140 (399)
                      ..++.|...+  .++++.+|..|+..|..+.          ..+.++.|...|++++.            .+|..|+.+|
T Consensus       621 ~~~~~L~~~L--~D~d~~VR~~Av~~L~~~~----------~~~~~~~L~~aL~D~d~------------~VR~~Aa~aL  676 (897)
T PRK13800        621 PSVAELAPYL--ADPDPGVRRTAVAVLTETT----------PPGFGPALVAALGDGAA------------AVRRAAAEGL  676 (897)
T ss_pred             hhHHHHHHHh--cCCCHHHHHHHHHHHhhhc----------chhHHHHHHHHHcCCCH------------HHHHHHHHHH
Confidence            3445555656  5788899999999998764          23457888888877766            7888998888


Q ss_pred             HHhcCChhhHHHHHhcCcHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhhcC------------chhHHHH----H
Q 015851          141 GLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHEN------------SSIKTRV----R  204 (399)
Q Consensus       141 ~~l~~~~~~~~~i~~~~~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~------------~~~~~~~----~  204 (399)
                      ..+.....         ..+.+...|++.+.        .++..++.+|..+...+            +..+...    .
T Consensus       677 ~~l~~~~~---------~~~~L~~~L~~~d~--------~VR~~A~~aL~~~~~~~~~~l~~~L~D~d~~VR~~Av~aL~  739 (897)
T PRK13800        677 RELVEVLP---------PAPALRDHLGSPDP--------VVRAAALDVLRALRAGDAALFAAALGDPDHRVRIEAVRALV  739 (897)
T ss_pred             HHHHhccC---------chHHHHHHhcCCCH--------HHHHHHHHHHHhhccCCHHHHHHHhcCCCHHHHHHHHHHHh
Confidence            87752111         12345555554333        56666666555443111            1111000    0


Q ss_pred             hcCChHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHH
Q 015851          205 MEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIK  284 (399)
Q Consensus       205 ~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~  284 (399)
                      ..+..+.|..++.++++.+|..++.+|+.+....         ...++.|..++.++++.+|..|+.+|+.+..  +.. 
T Consensus       740 ~~~~~~~l~~~l~D~~~~VR~~aa~aL~~~~~~~---------~~~~~~L~~ll~D~d~~VR~aA~~aLg~~g~--~~~-  807 (897)
T PRK13800        740 SVDDVESVAGAATDENREVRIAVAKGLATLGAGG---------APAGDAVRALTGDPDPLVRAAALAALAELGC--PPD-  807 (897)
T ss_pred             cccCcHHHHHHhcCCCHHHHHHHHHHHHHhcccc---------chhHHHHHHHhcCCCHHHHHHHHHHHHhcCC--cch-
Confidence            0111233445555556666666666665554311         1236777788888888888888888888742  211 


Q ss_pred             HHHHHCCCcHHHHHhhcCCChHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhccC
Q 015851          285 KEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQVI  364 (399)
Q Consensus       285 ~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~  364 (399)
                             ....++..|.++++.+|..|+.+|..+..           ...++.|..++.+++..||..|+.+|..+.  .
T Consensus       808 -------~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~-----------~~a~~~L~~~L~D~~~~VR~~A~~aL~~~~--~  867 (897)
T PRK13800        808 -------DVAAATAALRASAWQVRQGAARALAGAAA-----------DVAVPALVEALTDPHLDVRKAAVLALTRWP--G  867 (897)
T ss_pred             -------hHHHHHHHhcCCChHHHHHHHHHHHhccc-----------cchHHHHHHHhcCCCHHHHHHHHHHHhccC--C
Confidence                   23557777888888888888888887631           223588999999999999999999999972  1


Q ss_pred             CCCcchhHHHHHhhccccHHHHHHHHhh
Q 015851          365 TVSVLPAILIFIIINECQLEVLAFVLSE  392 (399)
Q Consensus       365 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~  392 (399)
                      +....+.+..  .+.+....|.......
T Consensus       868 ~~~a~~~L~~--al~D~d~~Vr~~A~~a  893 (897)
T PRK13800        868 DPAARDALTT--ALTDSDADVRAYARRA  893 (897)
T ss_pred             CHHHHHHHHH--HHhCCCHHHHHHHHHH
Confidence            2222344332  3344444555554443

>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.21  E-value=9.2e-10  Score=102.97  Aligned_cols=307  Identities=14%  Similarity=0.121  Sum_probs=199.9

Q ss_pred             hhhhhHHHHhhhhhcchhhhHHHHHHHHHHHHHHcCC-hhHHHHHHh----CCChHHHHhcccCCCCcccccCCCcchHH
Q 015851           57 SEVSAQVNVLNTTFSWLEADRAAAKRATHVLAELAKN-EEVVNWIVE----GGAVPALVKHLQAPPTSEADRNLKPFEHE  131 (399)
Q Consensus        57 ~~~~~~~~~L~~~l~~~~~~~~~~~~a~~~L~~l~~~-~~~~~~~~~----~g~l~~L~~lL~~~~~~~~~~~~~~~~~~  131 (399)
                      ..++..+|.|.+++.  ++|...++-|..+|.+++.| ++.-+.-+.    .-.+|.++++.+++++            .
T Consensus       124 ~~wpelLp~L~~~L~--s~d~n~~EgA~~AL~KIcEDsa~~lds~~~~rpl~~mipkfl~f~~h~sp------------k  189 (885)
T KOG2023|consen  124 QHWPELLPQLCELLD--SPDYNTCEGAFGALQKICEDSAQFLDSDVLTRPLNIMIPKFLQFFKHPSP------------K  189 (885)
T ss_pred             ccchhHHHHHHHHhc--CCcccccchhHHHHHHHHhhhHHHHhhhcccCchHHhHHHHHHHHhCCCh------------h
Confidence            456889999999985  44555688999999999997 443332111    1368899999999877            7


Q ss_pred             HHHHHHHHHHHhc--CChhhHHHHHhcCcHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhhcCchhHHHHHhcCCh
Q 015851          132 VEKGSAFALGLLA--VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGI  209 (399)
Q Consensus       132 ~~~~a~~~L~~l~--~~~~~~~~i~~~~~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i  209 (399)
                      +|..|+.++...-  .....-..+-  .+++.+..+-.+.++        +++...|.++..|....+. +-.-.-.+++
T Consensus       190 iRs~A~~cvNq~i~~~~qal~~~iD--~Fle~lFalanD~~~--------eVRk~vC~alv~Llevr~d-kl~phl~~Iv  258 (885)
T KOG2023|consen  190 IRSHAVGCVNQFIIIQTQALYVHID--KFLEILFALANDEDP--------EVRKNVCRALVFLLEVRPD-KLVPHLDNIV  258 (885)
T ss_pred             HHHHHHhhhhheeecCcHHHHHHHH--HHHHHHHHHccCCCH--------HHHHHHHHHHHHHHHhcHH-hcccchHHHH
Confidence            8889999998876  2222222211  144455555444443        9999999999999964442 2222234677


Q ss_pred             HHHHHhhcCCCHHHHHHHHHHHHHhhcCChhhHHHHHh--cCCHHHHHHhhcCCC-------------------------
Q 015851          210 PPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVE--CNALPTLILMLRSED-------------------------  262 (399)
Q Consensus       210 ~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~--~~~~~~L~~ll~~~~-------------------------  262 (399)
                      ..++...++.++++.-.||.....++. .+..+..+..  ...+|.|+.-+...+                         
T Consensus       259 eyML~~tqd~dE~VALEACEFwla~ae-qpi~~~~L~p~l~kliPvLl~~M~Ysd~D~~LL~~~eeD~~vpDreeDIkPR  337 (885)
T KOG2023|consen  259 EYMLQRTQDVDENVALEACEFWLALAE-QPICKEVLQPYLDKLIPVLLSGMVYSDDDIILLKNNEEDESVPDREEDIKPR  337 (885)
T ss_pred             HHHHHHccCcchhHHHHHHHHHHHHhc-CcCcHHHHHHHHHHHHHHHHccCccccccHHHhcCccccccCCchhhhccch
Confidence            788888888899999999999999998 5555544443  356777766443211                         


Q ss_pred             -------------------------------HHHHHHHHHHHHHhhcCChhHHHHHHHCCCcHHHHHhhcCCChHHHHHH
Q 015851          263 -------------------------------SAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREA  311 (399)
Q Consensus       263 -------------------------------~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a  311 (399)
                                                     -.+|+..+.+|.-++.-....   +. .-++|.|-+.|.+....+++.+
T Consensus       338 fhksk~~~~~~~~~~eDdddDe~DDdD~~~dWNLRkCSAAaLDVLanvf~~e---lL-~~l~PlLk~~L~~~~W~vrEag  413 (885)
T KOG2023|consen  338 FHKSKEHGNGEDADDEDDDDDEDDDDDAFSDWNLRKCSAAALDVLANVFGDE---LL-PILLPLLKEHLSSEEWKVREAG  413 (885)
T ss_pred             hhhchhccCccccccccccccccccccccccccHhhccHHHHHHHHHhhHHH---HH-HHHHHHHHHHcCcchhhhhhhh
Confidence                                           024444444444443211111   11 0134555555667888999999


Q ss_pred             HHHHHHhhccChhhHHHHHh--cCCHHHHHHhhCCCCHHHHHHHHHHHHHhhccC----CCC-cchhHHHHH-hhccccH
Q 015851          312 ALLLGQFAATDSDCKVHIVQ--RGAVRPLIEMLQSPDVQLREMSAFALGRLAQVI----TVS-VLPAILIFI-IINECQL  383 (399)
Q Consensus       312 ~~~L~~l~~~~~~~~~~l~~--~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~----~~~-~~~~~~~~~-~~~~~~~  383 (399)
                      ..+++.++++.   .+.+..  ..++|.|+.+|.++.+-||...+|+|...+...    +.+ +.|.+...+ .+-+...
T Consensus       414 vLAlGAIAEGc---M~g~~p~LpeLip~l~~~L~DKkplVRsITCWTLsRys~wv~~~~~~~~f~pvL~~ll~~llD~NK  490 (885)
T KOG2023|consen  414 VLALGAIAEGC---MQGFVPHLPELIPFLLSLLDDKKPLVRSITCWTLSRYSKWVVQDSRDEYFKPVLEGLLRRLLDSNK  490 (885)
T ss_pred             HHHHHHHHHHH---hhhcccchHHHHHHHHHHhccCccceeeeeeeeHhhhhhhHhcCChHhhhHHHHHHHHHHHhcccH
Confidence            99999998653   333333  246899999999999999999999999988533    223 334443333 3344556


Q ss_pred             HHHHHHHhhhHhh
Q 015851          384 EVLAFVLSEMVLL  396 (399)
Q Consensus       384 ~~~~~~l~~~~~~  396 (399)
                      +|..+.-++|.++
T Consensus       491 ~VQEAAcsAfAtl  503 (885)
T KOG2023|consen  491 KVQEAACSAFATL  503 (885)
T ss_pred             HHHHHHHHHHHHH
Confidence            6777766666553

>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]

Probab=99.20  E-value=3.6e-09  Score=94.34  Aligned_cols=268  Identities=19%  Similarity=0.157  Sum_probs=191.2

Q ss_pred             hhhHHHHHHHHHHHHHHcCC-hhHH---HHHHhCCChHHHHhcccCCCCcccccCCCcchHHHHHHHHHHHHHhcCChhh
Q 015851           74 EADRAAAKRATHVLAELAKN-EEVV---NWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEH  149 (399)
Q Consensus        74 ~~~~~~~~~a~~~L~~l~~~-~~~~---~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~  149 (399)
                      ..|..+...+.++++.++.. +...   ..-+..|   .|-..+.++...           +...-|+++|..+...+++
T Consensus       125 r~d~~iv~~~~~Ils~la~~g~~~~~~~e~~~~~~---~l~~~l~~~~~~-----------~~~~~~~rcLQ~ll~~~ey  190 (442)
T KOG2759|consen  125 RQDTFIVEMSFRILSKLACFGNCKMELSELDVYKG---FLKEQLQSSTNN-----------DYIQFAARCLQTLLRVDEY  190 (442)
T ss_pred             cCChHHHHHHHHHHHHHHHhccccccchHHHHHHH---HHHHHHhccCCC-----------chHHHHHHHHHHHhcCcch
Confidence            44556666678888887763 2221   1111122   233334442221           5566889999999999999


Q ss_pred             HHHHHhcCcHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhhcCCC-HHHHHHHH
Q 015851          150 QQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTD-TKVQRAAA  228 (399)
Q Consensus       150 ~~~i~~~~~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~-~~v~~~a~  228 (399)
                      |..++.++++..++..+.+...+      +.++.+.+.+++-|+ .++...+.+...+.|+.|..++++.. ++|.+-.+
T Consensus       191 R~~~v~adg~~~l~~~l~s~~~~------~QlQYqsifciWlLt-Fn~~~ae~~~~~~li~~L~~Ivk~~~KEKV~Rivl  263 (442)
T KOG2759|consen  191 RYAFVIADGVSLLIRILASTKCG------FQLQYQSIFCIWLLT-FNPHAAEKLKRFDLIQDLSDIVKESTKEKVTRIVL  263 (442)
T ss_pred             hheeeecCcchhhHHHHhccCcc------hhHHHHHHHHHHHhh-cCHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999622221      289999999999999 56666677777799999999998865 78999999


Q ss_pred             HHHHHhhcCCh------hhHHHHHhcCCHHHHHHhhcC--CCHHHHHHHHHHHHH-------hhcCChhHH---------
Q 015851          229 GALRTLAFKND------ENKNQIVECNALPTLILMLRS--EDSAIHYEAVGVIGN-------LVHSSPNIK---------  284 (399)
Q Consensus       229 ~~L~~L~~~~~------~~~~~~~~~~~~~~L~~ll~~--~~~~v~~~a~~~L~~-------l~~~~~~~~---------  284 (399)
                      .++.|+....+      +....++..++.+.+-.+-..  .|+++....-..-..       ++. .++..         
T Consensus       264 ai~~Nll~k~~~~~~~k~~~~~mv~~~v~k~l~~L~~rkysDEDL~~di~~L~e~L~~svq~LsS-FDeY~sEl~sG~L~  342 (442)
T KOG2759|consen  264 AIFRNLLDKGPDRETKKDIASQMVLCKVLKTLQSLEERKYSDEDLVDDIEFLTEKLKNSVQDLSS-FDEYKSELRSGRLE  342 (442)
T ss_pred             HHHHHHhccCchhhHHHHHHHHHHhcCchHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHhhcc-HHHHHHHHHhCCcC
Confidence            99999998653      344566777666665555443  455554433322222       221 11221         


Q ss_pred             ---------------HHHHHC--CCcHHHHHhhcCC-ChHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHhhCCCC
Q 015851          285 ---------------KEVLAA--GALQPVIGLLSSC-CSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPD  346 (399)
Q Consensus       285 ---------------~~~~~~--~~l~~L~~lL~~~-~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~v~~L~~ll~~~~  346 (399)
                                     ..+.+.  .++..|+++|... +|.+..-||.=|+......|+++..+.+.|+=..+.++++++|
T Consensus       343 WSP~Hk~e~FW~eNa~rlnennyellkiL~~lLe~s~Dp~iL~VAc~DIge~Vr~yP~gk~vv~k~ggKe~vM~Llnh~d  422 (442)
T KOG2759|consen  343 WSPVHKSEKFWRENADRLNENNYELLKILIKLLETSNDPIILCVACHDIGEYVRHYPEGKAVVEKYGGKERVMNLLNHED  422 (442)
T ss_pred             CCccccccchHHHhHHHHhhccHHHHHHHHHHHhcCCCCceeehhhhhHHHHHHhCchHhHHHHHhchHHHHHHHhcCCC
Confidence                           222222  2688999999854 4788888999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhhcc
Q 015851          347 VQLREMSAFALGRLAQV  363 (399)
Q Consensus       347 ~~v~~~a~~~L~~l~~~  363 (399)
                      ++|+.+|..|+..|..+
T Consensus       423 ~~Vry~ALlavQ~lm~~  439 (442)
T KOG2759|consen  423 PEVRYHALLAVQKLMVH  439 (442)
T ss_pred             chHHHHHHHHHHHHHhh
Confidence            99999999999887654

>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]

Probab=99.17  E-value=5.6e-09  Score=97.91  Aligned_cols=322  Identities=15%  Similarity=0.124  Sum_probs=208.9

Q ss_pred             hhhhhHHHHhhhhhcchhhhHHHHHHHHHHHHHHcC-ChhHHHHHHhCCChHHHHhcccCCCCcccccCCCcchHHHHHH
Q 015851           57 SEVSAQVNVLNTTFSWLEADRAAAKRATHVLAELAK-NEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKG  135 (399)
Q Consensus        57 ~~~~~~~~~L~~~l~~~~~~~~~~~~a~~~L~~l~~-~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~~~~~  135 (399)
                      ....+.++.|..+++..+.....+......+..++. +......+.+.+.++.|+++|+++++.           .++..
T Consensus        47 ~ik~GAv~~Ll~L~s~e~~s~~~k~~~~~llns~f~~eqd~v~svL~~~~ll~Ll~LLs~sD~~-----------~~le~  115 (678)
T KOG1293|consen   47 NIKLGAVELLLALLSLEDGSTELKNGFAVLLNSLFLGEQDKVDSVLRIIELLKLLQLLSESDSL-----------NVLEK  115 (678)
T ss_pred             hhhhcchHHHHhhccccCCchhhhhhHHHHHHhHHhhccchHHHHHHHhhHHHHHHHhcCcchH-----------hHHHH
Confidence            455666777777775444444455555556666665 477778899999999999999988832           67778


Q ss_pred             HHHHHHHhcCChhh---HHHHHhcCcHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHH
Q 015851          136 SAFALGLLAVKPEH---QQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPL  212 (399)
Q Consensus       136 a~~~L~~l~~~~~~---~~~i~~~~~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L  212 (399)
                      ..+++.++......   .........++.+..++.-..+        .....-+....+++. .+..+......|....+
T Consensus       116 ~l~~lR~Ifet~~~q~~~~s~~~~sIi~~~s~l~s~~lk--------~~~~l~~~~~a~~s~-~~~hq~Il~Na~i~ekI  186 (678)
T KOG1293|consen  116 TLRCLRTIFETSKYQDKKMSLHLKSIIVKFSLLYSIELK--------YISRLDVSRAAHLSS-TKDHQLILCNAGILEKI  186 (678)
T ss_pred             HHHHHHHHHhcccccccchhhhHHHHHHHHHHHHhhhhh--------hhhhhhhhhhccccc-cchhhheeccccchhhH
Confidence            99999998833322   2223333455555555552222        444555666666663 33445555566666666


Q ss_pred             HHhhcCCCHHHHHHHHHHHH---HhhcCChhhHHHH----HhcCCHHH--HHHhhcCC----------------------
Q 015851          213 VELLEFTDTKVQRAAAGALR---TLAFKNDENKNQI----VECNALPT--LILMLRSE----------------------  261 (399)
Q Consensus       213 ~~ll~~~~~~v~~~a~~~L~---~L~~~~~~~~~~~----~~~~~~~~--L~~ll~~~----------------------  261 (399)
                      .-++...+...|.+|+.+++   ++...++.+...+    .+.|+.+.  +.++++++                      
T Consensus       187 ~~l~~~~s~~~RlaaL~~~sr~~~iL~Nn~~~sm~~l~~L~d~~v~~r~~v~rL~k~~~~s~~l~sl~cl~~~~~~s~~~  266 (678)
T KOG1293|consen  187 NILLMYLSSKLRLAALLCLSRGDRILRNNPLGSMFLLGLLKDKGVNIRCVVTRLLKDPDFSERLRSLECLVPYLRKSFNY  266 (678)
T ss_pred             HHHHHhhhHHHHHHHHHHhhccceeeecCchhHHHHHHHHhccccchhhhhhhhhhCCCccHHHHHHHHHHHHHhccccc
Confidence            66666666777777777777   6665444333222    22333321  11111111                      


Q ss_pred             --------------------------------------------------------------------------------
Q 015851          262 --------------------------------------------------------------------------------  261 (399)
Q Consensus       262 --------------------------------------------------------------------------------  261 (399)
                                                                                                      
T Consensus       267 d~l~~~~~~~dmgd~~i~q~~~i~l~~~P~~s~l~~~~~l~c~~a~~~sklq~~~~e~~~~~~~~ellf~~~sl~a~~~~  346 (678)
T KOG1293|consen  267 DPLPWWFIFFDMGDSLIVQYNCIVLMNDPGLSTLDHTNVLFCILARFASKLQLPQHEEATLKTTTELLFICASLAASDEK  346 (678)
T ss_pred             cccccceeeccCchHHHHHHhhheeecCCceeehhhhhhhHHHHHHHHHhhhhHHhhhhhhhhHHHHHHHHHHHhhcchh
Confidence                                                                                            


Q ss_pred             -------------------------------------------CHHHHHHHHHHHHHhhcCChhHHHHHHHCCCcHHHHH
Q 015851          262 -------------------------------------------DSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIG  298 (399)
Q Consensus       262 -------------------------------------------~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~  298 (399)
                                                                 +..++..|+-++-+++..-...+..+-+.++.++|++
T Consensus       347 ~~~i~l~e~~i~~~~~~~~~i~~~k~~l~~~t~~~l~~~~~~kd~~~~aaa~l~~~s~srsV~aL~tg~~~~dv~~plvq  426 (678)
T KOG1293|consen  347 YRLILLNETLILNHLEYGLEISLKKEILETTTESHLMCLPPIKDHDFVAAALLCLKSFSRSVSALRTGLKRNDVAQPLVQ  426 (678)
T ss_pred             hhHHHhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHcCCccchhHHHHHH
Confidence                                                       1233444444444444332222222334568899999


Q ss_pred             hhcCCChHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhccCCCC-------cchh
Q 015851          299 LLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQVITVS-------VLPA  371 (399)
Q Consensus       299 lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~-------~~~~  371 (399)
                      ++..++..+...+.++|.|+.......+..++..|+++.+.+++.+.++.++..+.|+|+++..+.++.       -+++
T Consensus       427 ll~dp~~~i~~~~lgai~NlVmefs~~kskfl~~ngId~l~s~~~~~~~n~r~~~~~~Lr~l~f~~de~~k~~~~~ki~a  506 (678)
T KOG1293|consen  427 LLMDPEIMIMGITLGAICNLVMEFSNLKSKFLRNNGIDILESMLTDPDFNSRANSLWVLRHLMFNCDEEEKFQLLAKIPA  506 (678)
T ss_pred             HhhCcchhHHHHHHHHHHHHHhhcccHHHHHHHcCcHHHHHHHhcCCCchHHHHHHHHHHHHHhcchHHHHHHHHHHhhH
Confidence            999999999999999999999887889999999999999999999999999999999999999999874       1222


Q ss_pred             HHHHHhhccccHHHHHHHHhhhHhhhc
Q 015851          372 ILIFIIINECQLEVLAFVLSEMVLLFC  398 (399)
Q Consensus       372 ~~~~~~~~~~~~~~~~~~l~~~~~~~~  398 (399)
                      -.......+.+..|+.+++.-+=++.|
T Consensus       507 ~~i~~l~nd~d~~Vqeq~fqllRNl~c  533 (678)
T KOG1293|consen  507 NLILDLINDPDWAVQEQCFQLLRNLTC  533 (678)
T ss_pred             HHHHHHHhCCCHHHHHHHHHHHHHhhc
Confidence            222225566677777777776666655

>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments

Probab=99.17  E-value=8.6e-09  Score=95.16  Aligned_cols=226  Identities=24%  Similarity=0.250  Sum_probs=170.9

Q ss_pred             HHHHHHHHHHHHHHcCChhHHHHHHhCCChHHHHhcccCCCCcccccCCCcchHHHHHHHHHHHHHhcCChhhHHHHHhc
Q 015851           77 RAAAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIVDN  156 (399)
Q Consensus        77 ~~~~~~a~~~L~~l~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~  156 (399)
                      ...+.-++.+|..+...+++|..+.+.++++.|+.+|+....          ...++.+++-+++-++.+++..+.+...
T Consensus       158 ~~~~~~~v~~L~~LL~~~~~R~~f~~~~~v~~L~~~L~~~~~----------~~Ql~Y~~ll~lWlLSF~~~~~~~~~~~  227 (429)
T cd00256         158 NDYVQTAARCLQMLLRVDEYRFAFVLADGVPTLVKLLSNATL----------GFQLQYQSIFCIWLLTFNPHAAEVLKRL  227 (429)
T ss_pred             cchHHHHHHHHHHHhCCchHHHHHHHccCHHHHHHHHhhccc----------cHHHHHHHHHHHHHHhccHHHHHhhccc
Confidence            456778889999999999999999999999999999986442          2278999999999999888888888888


Q ss_pred             CcHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhhcCc------hhHHHHHhcCChHHHHHhhcC---CCHHHHHHH
Q 015851          157 GALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENS------SIKTRVRMEGGIPPLVELLEF---TDTKVQRAA  227 (399)
Q Consensus       157 ~~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~------~~~~~~~~~~~i~~L~~ll~~---~~~~v~~~a  227 (399)
                      +.++.++++++....+       .+.+.++.+|.|+.....      .....++..|+ +.++..|..   .|+++....
T Consensus       228 ~~i~~l~~i~k~s~KE-------KvvRv~l~~l~Nll~~~~~~~~~~~~~~~mv~~~l-~~~l~~L~~rk~~DedL~edl  299 (429)
T cd00256         228 SLIQDLSDILKESTKE-------KVIRIVLAIFRNLISKRVDREVKKTAALQMVQCKV-LKTLQSLEQRKYDDEDLTDDL  299 (429)
T ss_pred             cHHHHHHHHHHhhhhH-------HHHHHHHHHHHHHhhcccccchhhhHHHHHHHcCh-HHHHHHHhcCCCCcHHHHHHH
Confidence            9999999999988876       899999999999996331      12233444444 445555543   345543322


Q ss_pred             H-------HHHHHhhc--------------CCh---------hhHHHHHhcC--CHHHHHHhhc-CCCHHHHHHHHHHHH
Q 015851          228 A-------GALRTLAF--------------KND---------ENKNQIVECN--ALPTLILMLR-SEDSAIHYEAVGVIG  274 (399)
Q Consensus       228 ~-------~~L~~L~~--------------~~~---------~~~~~~~~~~--~~~~L~~ll~-~~~~~v~~~a~~~L~  274 (399)
                      -       ..+..+++              .+|         ++...+-+.+  .+..|+.+|. ++|+.+..-||.=++
T Consensus       300 ~~L~e~L~~~~k~ltsfD~Y~~El~sg~L~WSp~H~se~FW~EN~~kf~~~~~~llk~L~~iL~~s~d~~~laVAc~Dig  379 (429)
T cd00256         300 KFLTEELKNSVQDLSSFDEYKSELRSGRLHWSPVHKSEKFWRENADRLNEKNYELLKILIHLLETSVDPIILAVACHDIG  379 (429)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHhcCCccCCCCCCCchHHHHHHHHHHhcchHHHHHHHHHHhcCCCcceeehhhhhHH
Confidence            2       22233332              011         2334444432  3567888885 567888899999999


Q ss_pred             HhhcCChhHHHHHHHCCCcHHHHHhhcCCChHHHHHHHHHHHHhhc
Q 015851          275 NLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAA  320 (399)
Q Consensus       275 ~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~  320 (399)
                      .++...|.++..+-+-|+=..+++++.+++++++.+|+.++..+..
T Consensus       380 e~vr~~P~gr~i~~~lg~K~~vM~Lm~h~d~~Vr~eAL~avQklm~  425 (429)
T cd00256         380 EYVRHYPRGKDVVEQLGGKQRVMRLLNHEDPNVRYEALLAVQKLMV  425 (429)
T ss_pred             HHHHHCccHHHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence            9999889998888889999999999999999999999999998753

The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.

>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]

Probab=99.15  E-value=5.9e-09  Score=94.01  Aligned_cols=253  Identities=23%  Similarity=0.266  Sum_probs=189.1

Q ss_pred             hHHHHHHhCCChHHHHhcccCCCCcccccCCCcchHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHHHhccccCcc
Q 015851           95 EVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNC  174 (399)
Q Consensus        95 ~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~~~i~~L~~~L~~~~~~~~  174 (399)
                      ..++.+...|++..|+.++..++..          ..+|.+|.+.|..+.. .++++.++..| +..++.+-+.....  
T Consensus       171 ~LCD~iR~~~~lD~Llrmf~aPn~e----------t~vRve~~rlLEq~~~-aeN~d~va~~~-~~~Il~lAK~~e~~--  236 (832)
T KOG3678|consen  171 GLCDAIRLDGGLDLLLRMFQAPNLE----------TSVRVEAARLLEQILV-AENRDRVARIG-LGVILNLAKEREPV--  236 (832)
T ss_pred             hhhhHhhccchHHHHHHHHhCCchh----------HHHHHHHHHHHHHHHh-hhhhhHHhhcc-chhhhhhhhhcCcH--
Confidence            3456777889999999999988762          3678999999988763 46778888777 66666665433322  


Q ss_pred             ccccHHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhhcC-ChhhHHHHHhcCCHHH
Q 015851          175 SRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFK-NDENKNQIVECNALPT  253 (399)
Q Consensus       175 ~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~-~~~~~~~~~~~~~~~~  253 (399)
                           ++.+..+..|.++..+++.....++..|++..++..++..+|.+.++++-+|+|++.+ ....+..+++..+-+.
T Consensus       237 -----e~aR~~~~il~~mFKHSeet~~~Lvaa~~lD~vl~~~rRt~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EW  311 (832)
T KOG3678|consen  237 -----ELARSVAGILEHMFKHSEETCQRLVAAGGLDAVLYWCRRTDPALLRHCALALGNCALHGGQAVQRRMVEKRAAEW  311 (832)
T ss_pred             -----HHHHHHHHHHHHHhhhhHHHHHHHHhhcccchheeecccCCHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhh
Confidence                 8999999999999998888888899999999999999999999999999999999874 3466778899889999


Q ss_pred             HHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHHCC-------------------------------CcHHHHHhhcC
Q 015851          254 LILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAG-------------------------------ALQPVIGLLSS  302 (399)
Q Consensus       254 L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~-------------------------------~l~~L~~lL~~  302 (399)
                      |..+..+.|+-++.+||-+++.|+.. .+.-..+..+|                               -++.|+.+|++
T Consensus       312 LF~LA~skDel~R~~AClAV~vlat~-KE~E~~VrkS~TlaLVEPlva~~DP~~FARD~hd~aQG~~~d~LqRLvPlLdS  390 (832)
T KOG3678|consen  312 LFPLAFSKDELLRLHACLAVAVLATN-KEVEREVRKSGTLALVEPLVASLDPGRFARDAHDYAQGRGPDDLQRLVPLLDS  390 (832)
T ss_pred             hhhhhcchHHHHHHHHHHHHhhhhhh-hhhhHHHhhccchhhhhhhhhccCcchhhhhhhhhhccCChHHHHHhhhhhhc
Confidence            99998888899999999999999854 33333333333                               23444445544


Q ss_pred             CChHHHHHHHHHHHHhhcc-Chhh-HHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhccCCCC
Q 015851          303 CCSESQREAALLLGQFAAT-DSDC-KVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQVITVS  367 (399)
Q Consensus       303 ~~~~v~~~a~~~L~~l~~~-~~~~-~~~l~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~  367 (399)
                      ...+.+.-+++-++.-+.- ...+ .+.+.+-|+++.|..+..+++.-....|..+|..+.+.-|-+
T Consensus       391 ~R~EAq~i~AF~l~~EAaIKs~Q~K~kVFseIGAIQaLKevaSS~d~vaakfAseALtviGEEVP~~  457 (832)
T KOG3678|consen  391 NRLEAQCIGAFYLCAEAAIKSLQGKTKVFSEIGAIQALKEVASSPDEVAAKFASEALTVIGEEVPYK  457 (832)
T ss_pred             chhhhhhhHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHhccccChh
Confidence            3334444344333322211 1222 334567899999999999888888889999999999888754

>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional

Probab=99.13  E-value=1.1e-08  Score=105.76  Aligned_cols=229  Identities=19%  Similarity=0.181  Sum_probs=152.8

Q ss_pred             hhHHHHhhhhhcchhhhHHHHHHHHHHHHHHcCChhHHHHHHhCCChHHHHhcccCCCCcccccCCCcchHHHHHHHHHH
Q 015851           60 SAQVNVLNTTFSWLEADRAAAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFA  139 (399)
Q Consensus        60 ~~~~~~L~~~l~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~~~~~a~~~  139 (399)
                      +..++.|...+  .+++..+|..|+..|..+.....         ..+.|...|.+++.            .+|..++.+
T Consensus       651 ~~~~~~L~~aL--~D~d~~VR~~Aa~aL~~l~~~~~---------~~~~L~~~L~~~d~------------~VR~~A~~a  707 (897)
T PRK13800        651 PGFGPALVAAL--GDGAAAVRRAAAEGLRELVEVLP---------PAPALRDHLGSPDP------------VVRAAALDV  707 (897)
T ss_pred             hhHHHHHHHHH--cCCCHHHHHHHHHHHHHHHhccC---------chHHHHHHhcCCCH------------HHHHHHHHH
Confidence            45667777777  56778899999999887743210         11234444444333            455555555


Q ss_pred             HHHhcC-C------------hhhHHH----HHhcCcHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhhcCchhHHH
Q 015851          140 LGLLAV-K------------PEHQQL----IVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTR  202 (399)
Q Consensus       140 L~~l~~-~------------~~~~~~----i~~~~~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~  202 (399)
                      |..+.. .            +..|..    +...+..+.|...+.+.+.        +++..++.+|..+....      
T Consensus       708 L~~~~~~~~~~l~~~L~D~d~~VR~~Av~aL~~~~~~~~l~~~l~D~~~--------~VR~~aa~aL~~~~~~~------  773 (897)
T PRK13800        708 LRALRAGDAALFAAALGDPDHRVRIEAVRALVSVDDVESVAGAATDENR--------EVRIAVAKGLATLGAGG------  773 (897)
T ss_pred             HHhhccCCHHHHHHHhcCCCHHHHHHHHHHHhcccCcHHHHHHhcCCCH--------HHHHHHHHHHHHhcccc------
Confidence            544321 0            001100    0011122344555555444        67777777776665321      


Q ss_pred             HHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChh
Q 015851          203 VRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPN  282 (399)
Q Consensus       203 ~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~  282 (399)
                         ...++.|..++.++++.+|..|+.+|+.+... +         ..++.++..|.++++.||..|+.+|+.+.  .+ 
T Consensus       774 ---~~~~~~L~~ll~D~d~~VR~aA~~aLg~~g~~-~---------~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~--~~-  837 (897)
T PRK13800        774 ---APAGDAVRALTGDPDPLVRAAALAALAELGCP-P---------DDVAAATAALRASAWQVRQGAARALAGAA--AD-  837 (897)
T ss_pred             ---chhHHHHHHHhcCCCHHHHHHHHHHHHhcCCc-c---------hhHHHHHHHhcCCChHHHHHHHHHHHhcc--cc-
Confidence               12367889999999999999999999988641 1         12356888899999999999999999874  12 


Q ss_pred             HHHHHHHCCCcHHHHHhhcCCChHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHH
Q 015851          283 IKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGR  359 (399)
Q Consensus       283 ~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~  359 (399)
                              ..++.|+.+|.+++..||..|+.+|+.+. .++.         ..+.|...+++.+..||..|..+|..
T Consensus       838 --------~a~~~L~~~L~D~~~~VR~~A~~aL~~~~-~~~~---------a~~~L~~al~D~d~~Vr~~A~~aL~~  896 (897)
T PRK13800        838 --------VAVPALVEALTDPHLDVRKAAVLALTRWP-GDPA---------ARDALTTALTDSDADVRAYARRALAH  896 (897)
T ss_pred             --------chHHHHHHHhcCCCHHHHHHHHHHHhccC-CCHH---------HHHHHHHHHhCCCHHHHHHHHHHHhh
Confidence                    24689999999999999999999999972 2222         25677789999999999999999863

>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=99.12  E-value=4.3e-09  Score=95.54  Aligned_cols=212  Identities=19%  Similarity=0.237  Sum_probs=156.7

Q ss_pred             HHHHHHHHHHHHhc-CChhhHHHHHh------cCcHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhhcCchhHHHH
Q 015851          131 EVEKGSAFALGLLA-VKPEHQQLIVD------NGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRV  203 (399)
Q Consensus       131 ~~~~~a~~~L~~l~-~~~~~~~~i~~------~~~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~  203 (399)
                      ++.++.+..+..+. .++...+.+..      .....++++++...+.        -+...++..|..+....+......
T Consensus        72 d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll~~~D~--------~i~~~a~~iLt~Ll~~~~~~~~~~  143 (312)
T PF03224_consen   72 DTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLLDRNDS--------FIQLKAAFILTSLLSQGPKRSEKL  143 (312)
T ss_dssp             HHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH-S-SSH--------HHHHHHHHHHHHHHTSTTT--HHH
T ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHhcCCCH--------HHHHHHHHHHHHHHHcCCccccch
Confidence            88889999999988 77776666654      1257788887776644        888999999999997555433321


Q ss_pred             HhcCChHHHHHhhcC----CCHHHHHHHHHHHHHhhcCChhhHHHHHhcCCHHHHHHhh------c-CCCHHHHHHHHHH
Q 015851          204 RMEGGIPPLVELLEF----TDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILML------R-SEDSAIHYEAVGV  272 (399)
Q Consensus       204 ~~~~~i~~L~~ll~~----~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~L~~ll------~-~~~~~v~~~a~~~  272 (399)
                      . .+.++.++..+.+    ++.+++..++.+|.+|.. .+.++..+.+.++++.+..++      . .....++.+++.+
T Consensus       144 ~-~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~-~~~~R~~f~~~~~v~~l~~iL~~~~~~~~~~~~Ql~Y~~ll~  221 (312)
T PF03224_consen  144 V-KEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLR-SKEYRQVFWKSNGVSPLFDILRKQATNSNSSGIQLQYQALLC  221 (312)
T ss_dssp             H-HHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHT-SHHHHHHHHTHHHHHHHHHHHH---------HHHHHHHHHHH
T ss_pred             H-HHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhC-cchhHHHHHhcCcHHHHHHHHHhhcccCCCCchhHHHHHHHH
Confidence            1 3455666666654    456678999999999997 799999999999999999999      2 2356899999999


Q ss_pred             HHHhhcCChhHHHHHHHCCCcHHHHHhhc-CCChHHHHHHHHHHHHhhccChh-hHHHHHhcCCHHHHHHhhCC--CCHH
Q 015851          273 IGNLVHSSPNIKKEVLAAGALQPVIGLLS-SCCSESQREAALLLGQFAATDSD-CKVHIVQRGAVRPLIEMLQS--PDVQ  348 (399)
Q Consensus       273 L~~l~~~~~~~~~~~~~~~~l~~L~~lL~-~~~~~v~~~a~~~L~~l~~~~~~-~~~~l~~~g~v~~L~~ll~~--~~~~  348 (399)
                      +|-++.. +.....+...+.++.|+.+++ ....++.+-+..++.|+...++. ....++..|+++.+-.+...  +|++
T Consensus       222 lWlLSF~-~~~~~~~~~~~~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~~~~~~~~~~mv~~~~l~~l~~L~~rk~~Ded  300 (312)
T PF03224_consen  222 LWLLSFE-PEIAEELNKKYLIPLLADILKDSIKEKVVRVSLAILRNLLSKAPKSNIELMVLCGLLKTLQNLSERKWSDED  300 (312)
T ss_dssp             HHHHTTS-HHHHHHHHTTSHHHHHHHHHHH--SHHHHHHHHHHHHHTTSSSSTTHHHHHHHH-HHHHHHHHHSS--SSHH
T ss_pred             HHHHhcC-HHHHHHHhccchHHHHHHHHHhcccchHHHHHHHHHHHHHhccHHHHHHHHHHccHHHHHHHHhcCCCCCHH
Confidence            9999975 777788888899999999998 45668999999999999976554 77778888888877777753  5787


Q ss_pred             HHHHH
Q 015851          349 LREMS  353 (399)
Q Consensus       349 v~~~a  353 (399)
                      +....
T Consensus       301 l~edl  305 (312)
T PF03224_consen  301 LTEDL  305 (312)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            76543

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.

>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=99.11  E-value=2.3e-09  Score=97.27  Aligned_cols=204  Identities=22%  Similarity=0.273  Sum_probs=147.7

Q ss_pred             cHHHHHHHHhcc-ccCccccccHHHHHHHHHHHHHHhhcCchhHHHHHh------cCChHHHHHhhcCCCHHHHHHHHHH
Q 015851          158 ALSHLVNLLKRH-MDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRM------EGGIPPLVELLEFTDTKVQRAAAGA  230 (399)
Q Consensus       158 ~i~~L~~~L~~~-~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~------~~~i~~L~~ll~~~~~~v~~~a~~~  230 (399)
                      +...++.+|+.. ...       ++.+.++..+..+...++.....+..      ......++.++.++|..+...++..
T Consensus        56 ~~~~~l~lL~~~~~~~-------d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll~~~D~~i~~~a~~i  128 (312)
T PF03224_consen   56 YASLFLNLLNKLSSND-------DTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLLDRNDSFIQLKAAFI  128 (312)
T ss_dssp             ------HHHHHH---H-------HHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH-S-SSHHHHHHHHHH
T ss_pred             HHHHHHHHHHHccCcH-------HHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHhcCCCHHHHHHHHHH
Confidence            566777777776 433       89999999999999888766655554      1357788889999999999999999


Q ss_pred             HHHhhcCChhhHHHHHhcCCHHHHHHhhcC----CCHHHHHHHHHHHHHhhcCChhHHHHHHHCCCcHHHHHhh-----c
Q 015851          231 LRTLAFKNDENKNQIVECNALPTLILMLRS----EDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLL-----S  301 (399)
Q Consensus       231 L~~L~~~~~~~~~~~~~~~~~~~L~~ll~~----~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL-----~  301 (399)
                      |..+....+....... .+.++.+++.+.+    ++.+++..++.+|.++.. .+..+..+.+.++++.+..++     .
T Consensus       129 Lt~Ll~~~~~~~~~~~-~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~-~~~~R~~f~~~~~v~~l~~iL~~~~~~  206 (312)
T PF03224_consen  129 LTSLLSQGPKRSEKLV-KEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLR-SKEYRQVFWKSNGVSPLFDILRKQATN  206 (312)
T ss_dssp             HHHHHTSTTT--HHHH-HHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHT-SHHHHHHHHTHHHHHHHHHHHH-----
T ss_pred             HHHHHHcCCccccchH-HHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhC-cchhHHHHHhcCcHHHHHHHHHhhccc
Confidence            9999985544433322 3456667766654    455778999999999986 488899999999999999999     2


Q ss_pred             --CCChHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHhhC-CCCHHHHHHHHHHHHHhhccCCCCcchh
Q 015851          302 --SCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQ-SPDVQLREMSAFALGRLAQVITVSVLPA  371 (399)
Q Consensus       302 --~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~v~~L~~ll~-~~~~~v~~~a~~~L~~l~~~~~~~~~~~  371 (399)
                        ..+..++-+++.++|.++ .+++....+...++++.|.++++ +..++|.+.+..++.|+....+..+.+.
T Consensus       207 ~~~~~~Ql~Y~~ll~lWlLS-F~~~~~~~~~~~~~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~~~~~~~~~~  278 (312)
T PF03224_consen  207 SNSSGIQLQYQALLCLWLLS-FEPEIAEELNKKYLIPLLADILKDSIKEKVVRVSLAILRNLLSKAPKSNIEL  278 (312)
T ss_dssp             ----HHHHHHHHHHHHHHHT-TSHHHHHHHHTTSHHHHHHHHHHH--SHHHHHHHHHHHHHTTSSSSTTHHHH
T ss_pred             CCCCchhHHHHHHHHHHHHh-cCHHHHHHHhccchHHHHHHHHHhcccchHHHHHHHHHHHHHhccHHHHHHH
Confidence              233467788999999998 46888889999899999999996 5678899999999999999888654443

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.07  E-value=9e-09  Score=100.88  Aligned_cols=247  Identities=17%  Similarity=0.124  Sum_probs=190.9

Q ss_pred             hhHHHHhhhhhcchhhhHHHHHHHHHHHHHHcC-ChhHHHHHHhCCChHHHHhcccCCCCcccccCCCcchHHHHHHHHH
Q 015851           60 SAQVNVLNTTFSWLEADRAAAKRATHVLAELAK-NEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAF  138 (399)
Q Consensus        60 ~~~~~~L~~~l~~~~~~~~~~~~a~~~L~~l~~-~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~~~~~a~~  138 (399)
                      |..+|+...+|-    ..-.|.+|+..|+.... ++........-|+.|..++||+++-.            ++|.--+-
T Consensus       471 PeQLPiVLQVLL----SQvHRlRAL~LL~RFLDlGpWAV~LaLsVGIFPYVLKLLQS~a~------------ELrpiLVF  534 (1387)
T KOG1517|consen  471 PEQLPIVLQVLL----SQVHRLRALVLLARFLDLGPWAVDLALSVGIFPYVLKLLQSSAR------------ELRPILVF  534 (1387)
T ss_pred             hHhcchHHHHHH----HHHHHHHHHHHHHHHhccchhhhhhhhccchHHHHHHHhccchH------------hhhhhHHH
Confidence            344554444431    23457788998888877 68888878888999999999998776            77777777


Q ss_pred             HHHHhc-CChhhHHHHHhcCcHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhhc
Q 015851          139 ALGLLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLE  217 (399)
Q Consensus       139 ~L~~l~-~~~~~~~~i~~~~~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~  217 (399)
                      +-+.+- -++.++..+++.++-.++++.|......+.     +=+..++.+|..++...+..+....+.+.+...++.|.
T Consensus       535 IWAKILAvD~SCQ~dLvKe~g~~YF~~vL~~~~~~~~-----EqrtmaAFVLAviv~nf~lGQ~acl~~~li~iCle~ln  609 (1387)
T KOG1517|consen  535 IWAKILAVDPSCQADLVKENGYKYFLQVLDPSQAIPP-----EQRTMAAFVLAVIVRNFKLGQKACLNGNLIGICLEHLN  609 (1387)
T ss_pred             HHHHHHhcCchhHHHHHhccCceeEEEEecCcCCCCH-----HHHHHHHHHHHHHHcccchhHHHhccccHHHHHHHHhc
Confidence            776655 789999999998888888888887322221     66778999999999888888888888999999999999


Q ss_pred             CC-CHHHHHHHHHHHHHhhcCChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcC----ChhHHHHH-----
Q 015851          218 FT-DTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHS----SPNIKKEV-----  287 (399)
Q Consensus       218 ~~-~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~----~~~~~~~~-----  287 (399)
                      ++ .+-++..++-+|+.|-..+++.+-.-...++.+.|+.+|.++-++||..|+.+|+.+..+    .++....+     
T Consensus       610 d~~~pLLrQW~~icLG~LW~d~~~Arw~G~r~~AhekL~~~LsD~vpEVRaAAVFALgtfl~~~~d~fde~~~~~~~~~~  689 (1387)
T KOG1517|consen  610 DDPEPLLRQWLCICLGRLWEDYDEARWSGRRDNAHEKLILLLSDPVPEVRAAAVFALGTFLSNGSDNFDEQTLVVEEEID  689 (1387)
T ss_pred             CCccHHHHHHHHHHHHHHhhhcchhhhccccccHHHHHHHHhcCccHHHHHHHHHHHHHHhcccccccchhhhhhhhhhc
Confidence            85 688999999999999998777777777788999999999999999999999999998864    22222211     


Q ss_pred             -------HHCCCc---HHHHHhhcCCChHHHHHHHHHHHHhhccChhhHH
Q 015851          288 -------LAAGAL---QPVIGLLSSCCSESQREAALLLGQFAATDSDCKV  327 (399)
Q Consensus       288 -------~~~~~l---~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~  327 (399)
                             ++..+.   ..++.+++..++-++.+.+.+|..+..+...+..
T Consensus       690 l~~~~~~~E~~i~~~~~~ll~~vsdgsplvr~ev~v~ls~~~~g~~~~~~  739 (1387)
T KOG1517|consen  690 LDDERTSIEDLIIKGLMSLLALVSDGSPLVRTEVVVALSHFVVGYVSHLK  739 (1387)
T ss_pred             chhhhhhHHHHHHhhHHHHHHHHhccchHHHHHHHHHHHHHHHhhHHHhH
Confidence                   111122   3667778888999999999999988865444433

>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]

Probab=99.06  E-value=1.7e-08  Score=97.00  Aligned_cols=216  Identities=20%  Similarity=0.203  Sum_probs=155.2

Q ss_pred             hhhhHHHHhhhhhcchhhhHHHHHHHHHHHHHHcCC-hhHHHHHHhCCChHHHHhcccCCCCcccccCCCcchHHHHHHH
Q 015851           58 EVSAQVNVLNTTFSWLEADRAAAKRATHVLAELAKN-EEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGS  136 (399)
Q Consensus        58 ~~~~~~~~L~~~l~~~~~~~~~~~~a~~~L~~l~~~-~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~~~~~a  136 (399)
                      .+..++|.|..+++ .+.+.++...|+++|.+|+.- |.....+++++.||.|++-|..-..-           ++-+++
T Consensus       208 pv~slvp~Lv~LL~-~E~n~DIMl~AcRaltyl~evlP~S~a~vV~~~aIPvl~~kL~~Ieyi-----------DvAEQ~  275 (1051)
T KOG0168|consen  208 PVKSLVPVLVALLS-HEHNFDIMLLACRALTYLCEVLPRSSAIVVDEHAIPVLLEKLLTIEYI-----------DVAEQS  275 (1051)
T ss_pred             cHHHHHHHHHHHHh-ccccHHHHHHHHHHHHHHHhhccchhheeecccchHHHHHhhhhhhhh-----------HHHHHH
Confidence            45667888888776 345688999999999999995 99999999999999999866543321           788899


Q ss_pred             HHHHHHhcCChhhHHHHHhcCcHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhhcCch-hHHHHHhcCChHHHHHh
Q 015851          137 AFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSS-IKTRVRMEGGIPPLVEL  215 (399)
Q Consensus       137 ~~~L~~l~~~~~~~~~i~~~~~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~-~~~~~~~~~~i~~L~~l  215 (399)
                      +.+|..++.  ..-..+.++|++...+.+|.-...        .+++.|+.+-.|+|..-.. .-..+  ...+|.|..+
T Consensus       276 LqALE~iSR--~H~~AiL~AG~l~a~LsylDFFSi--------~aQR~AlaiaaN~Cksi~sd~f~~v--~ealPlL~~l  343 (1051)
T KOG0168|consen  276 LQALEKISR--RHPKAILQAGALSAVLSYLDFFSI--------HAQRVALAIAANCCKSIRSDEFHFV--MEALPLLTPL  343 (1051)
T ss_pred             HHHHHHHHh--hccHHHHhcccHHHHHHHHHHHHH--------HHHHHHHHHHHHHHhcCCCccchHH--HHHHHHHHHH
Confidence            999999992  223567889999999999987776        8999999999999963221 11223  3569999999


Q ss_pred             hcCCCHHHHHHHHHHHHHhhc---CChhhHHHHHhcCCHHHHHHhhcCCC----HHHHHHHHHHHHHhhcCChhHHHHHH
Q 015851          216 LEFTDTKVQRAAAGALRTLAF---KNDENKNQIVECNALPTLILMLRSED----SAIHYEAVGVIGNLVHSSPNIKKEVL  288 (399)
Q Consensus       216 l~~~~~~v~~~a~~~L~~L~~---~~~~~~~~~~~~~~~~~L~~ll~~~~----~~v~~~a~~~L~~l~~~~~~~~~~~~  288 (399)
                      |+..+....+.++-++..++.   +.++..++++..|.+....+++.-..    ..+....++.+..++.+++-....+.
T Consensus       344 Ls~~D~k~ies~~ic~~ri~d~f~h~~~kLdql~s~dLi~~~~qLlsvt~t~Ls~~~~~~vIrmls~msS~~pl~~~tl~  423 (1051)
T KOG0168|consen  344 LSYQDKKPIESVCICLTRIADGFQHGPDKLDQLCSHDLITNIQQLLSVTPTILSNGTYTGVIRMLSLMSSGSPLLFRTLL  423 (1051)
T ss_pred             HhhccchhHHHHHHHHHHHHHhcccChHHHHHHhchhHHHHHHHHHhcCcccccccchhHHHHHHHHHccCChHHHHHHH
Confidence            999999999999999988885   34566677888888888888776432    12333334444444443333333333


Q ss_pred             HCCCcHHHH
Q 015851          289 AAGALQPVI  297 (399)
Q Consensus       289 ~~~~l~~L~  297 (399)
                      ..++...|.
T Consensus       424 k~~I~~~L~  432 (1051)
T KOG0168|consen  424 KLDIADTLK  432 (1051)
T ss_pred             HhhHHHHHH
Confidence            333333333

>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.98  E-value=3.5e-08  Score=96.92  Aligned_cols=247  Identities=24%  Similarity=0.265  Sum_probs=152.8

Q ss_pred             hhhhHHHHHHHHHHHHHHcCChhHHHHHHhCCChHHHHhcccCCCCcccccCCCcchHHHHHHHHHHHHHhc-CChhhHH
Q 015851           73 LEADRAAAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA-VKPEHQQ  151 (399)
Q Consensus        73 ~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~~~~~a~~~L~~l~-~~~~~~~  151 (399)
                      .++++.+|..|+.+|+++. +++....+     ++.+.+++.++++            .+|+.|+.++.++. .+|+.-.
T Consensus        89 ~~~n~~~~~lAL~~l~~i~-~~~~~~~l-----~~~v~~ll~~~~~------------~VRk~A~~~l~~i~~~~p~~~~  150 (526)
T PF01602_consen   89 NSPNPYIRGLALRTLSNIR-TPEMAEPL-----IPDVIKLLSDPSP------------YVRKKAALALLKIYRKDPDLVE  150 (526)
T ss_dssp             CSSSHHHHHHHHHHHHHH--SHHHHHHH-----HHHHHHHHHSSSH------------HHHHHHHHHHHHHHHHCHCCHH
T ss_pred             cCCCHHHHHHHHhhhhhhc-ccchhhHH-----HHHHHHHhcCCch------------HHHHHHHHHHHHHhccCHHHHH
Confidence            4567889999999999987 45544443     7888899998776            89999999999999 6666543


Q ss_pred             HHHhcCcHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHH
Q 015851          152 LIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGAL  231 (399)
Q Consensus       152 ~i~~~~~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L  231 (399)
                         .. .++.+.+++.+.+.        .++..++.++..+ ..++.... -.-...++.|..++...++-.+..+++.|
T Consensus       151 ---~~-~~~~l~~lL~d~~~--------~V~~~a~~~l~~i-~~~~~~~~-~~~~~~~~~L~~~l~~~~~~~q~~il~~l  216 (526)
T PF01602_consen  151 ---DE-LIPKLKQLLSDKDP--------SVVSAALSLLSEI-KCNDDSYK-SLIPKLIRILCQLLSDPDPWLQIKILRLL  216 (526)
T ss_dssp             ---GG-HHHHHHHHTTHSSH--------HHHHHHHHHHHHH-HCTHHHHT-THHHHHHHHHHHHHTCCSHHHHHHHHHHH
T ss_pred             ---HH-HHHHHhhhccCCcc--------hhHHHHHHHHHHH-ccCcchhh-hhHHHHHHHhhhcccccchHHHHHHHHHH
Confidence               22 58888899866654        7888899998888 22222111 11123345555555677777788888887


Q ss_pred             HHhhcCChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHHCCCcHHHHHhhcCCChHHHHHH
Q 015851          232 RTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREA  311 (399)
Q Consensus       232 ~~L~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a  311 (399)
                      ..++...+.....   ...++.+..++++.++.+...++.++..+... +.     .-..+++.|..++.++++.++-.+
T Consensus       217 ~~~~~~~~~~~~~---~~~i~~l~~~l~s~~~~V~~e~~~~i~~l~~~-~~-----~~~~~~~~L~~lL~s~~~nvr~~~  287 (526)
T PF01602_consen  217 RRYAPMEPEDADK---NRIIEPLLNLLQSSSPSVVYEAIRLIIKLSPS-PE-----LLQKAINPLIKLLSSSDPNVRYIA  287 (526)
T ss_dssp             TTSTSSSHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSS-HH-----HHHHHHHHHHHHHTSSSHHHHHHH
T ss_pred             HhcccCChhhhhH---HHHHHHHHHHhhccccHHHHHHHHHHHHhhcc-hH-----HHHhhHHHHHHHhhcccchhehhH
Confidence            7777643333311   23455566666666667777777777666532 22     222346666667766666677667


Q ss_pred             HHHHHHhhccChhhHHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhccCC
Q 015851          312 ALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQVIT  365 (399)
Q Consensus       312 ~~~L~~l~~~~~~~~~~l~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~  365 (399)
                      +..|..++...   ...+.  .....+..+..+++..++..+...|..++...+
T Consensus       288 L~~L~~l~~~~---~~~v~--~~~~~~~~l~~~~d~~Ir~~~l~lL~~l~~~~n  336 (526)
T PF01602_consen  288 LDSLSQLAQSN---PPAVF--NQSLILFFLLYDDDPSIRKKALDLLYKLANESN  336 (526)
T ss_dssp             HHHHHHHCCHC---HHHHG--THHHHHHHHHCSSSHHHHHHHHHHHHHH--HHH
T ss_pred             HHHHHHhhccc---chhhh--hhhhhhheecCCCChhHHHHHHHHHhhcccccc
Confidence            76766666433   11111  111122222235566666666666666665443

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.

>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]

Probab=98.97  E-value=6.5e-08  Score=86.53  Aligned_cols=228  Identities=21%  Similarity=0.243  Sum_probs=173.3

Q ss_pred             hhHHHHHHHHHHHHHHcCChhHHHHHHhCCChHHHHhcccCCCCcccccCCCcchHHHHHHHHHHHHHhcCChhhHHHHH
Q 015851           75 ADRAAAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIV  154 (399)
Q Consensus        75 ~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~i~  154 (399)
                      .+......|.+||..+...+++|..++..+++..++..+.+...          +..++.+.+.+++-|+.+|...+.+.
T Consensus       169 ~~~~~~~~~~rcLQ~ll~~~eyR~~~v~adg~~~l~~~l~s~~~----------~~QlQYqsifciWlLtFn~~~ae~~~  238 (442)
T KOG2759|consen  169 TNNDYIQFAARCLQTLLRVDEYRYAFVIADGVSLLIRILASTKC----------GFQLQYQSIFCIWLLTFNPHAAEKLK  238 (442)
T ss_pred             CCCchHHHHHHHHHHHhcCcchhheeeecCcchhhHHHHhccCc----------chhHHHHHHHHHHHhhcCHHHHHHHh
Confidence            44556778999999999999999999999999999998853222          23899999999999999999999998


Q ss_pred             hcCcHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhhcCc------hhHHHHHhcCChHHHHHhhcC---CCHHHHH
Q 015851          155 DNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENS------SIKTRVRMEGGIPPLVELLEF---TDTKVQR  225 (399)
Q Consensus       155 ~~~~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~------~~~~~~~~~~~i~~L~~ll~~---~~~~v~~  225 (399)
                      ..+.++.|..+++....+       .+.+.++.++.|++...+      ....... .+.++..++.|..   .|+++..
T Consensus       239 ~~~li~~L~~Ivk~~~KE-------KV~Rivlai~~Nll~k~~~~~~~k~~~~~mv-~~~v~k~l~~L~~rkysDEDL~~  310 (442)
T KOG2759|consen  239 RFDLIQDLSDIVKESTKE-------KVTRIVLAIFRNLLDKGPDRETKKDIASQMV-LCKVLKTLQSLEERKYSDEDLVD  310 (442)
T ss_pred             hccHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHhccCchhhHHHHHHHHHH-hcCchHHHHHHHhcCCCcHHHHH
Confidence            899999999999988776       888999999999996553      1222223 3445555555543   3444433


Q ss_pred             HHH-------HHHHHhhcC--------------Ch---------hhHHHHHh--cCCHHHHHHhhcCC-CHHHHHHHHHH
Q 015851          226 AAA-------GALRTLAFK--------------ND---------ENKNQIVE--CNALPTLILMLRSE-DSAIHYEAVGV  272 (399)
Q Consensus       226 ~a~-------~~L~~L~~~--------------~~---------~~~~~~~~--~~~~~~L~~ll~~~-~~~v~~~a~~~  272 (399)
                      ..-       .-.-.|++.              +|         ++...+-+  ..++..|+++|+.+ ||.+..-||.-
T Consensus       311 di~~L~e~L~~svq~LsSFDeY~sEl~sG~L~WSP~Hk~e~FW~eNa~rlnennyellkiL~~lLe~s~Dp~iL~VAc~D  390 (442)
T KOG2759|consen  311 DIEFLTEKLKNSVQDLSSFDEYKSELRSGRLEWSPVHKSEKFWRENADRLNENNYELLKILIKLLETSNDPIILCVACHD  390 (442)
T ss_pred             HHHHHHHHHHHHHHhhccHHHHHHHHHhCCcCCCccccccchHHHhHHHHhhccHHHHHHHHHHHhcCCCCceeehhhhh
Confidence            221       122223320              11         13333333  23577789999865 58889999999


Q ss_pred             HHHhhcCChhHHHHHHHCCCcHHHHHhhcCCChHHHHHHHHHHHHhhc
Q 015851          273 IGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAA  320 (399)
Q Consensus       273 L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~  320 (399)
                      ++...+..|+++..+.+.|+=..++++|++++++|+-+|+.++..+..
T Consensus       391 Ige~Vr~yP~gk~vv~k~ggKe~vM~Llnh~d~~Vry~ALlavQ~lm~  438 (442)
T KOG2759|consen  391 IGEYVRHYPEGKAVVEKYGGKERVMNLLNHEDPEVRYHALLAVQKLMV  438 (442)
T ss_pred             HHHHHHhCchHhHHHHHhchHHHHHHHhcCCCchHHHHHHHHHHHHHh
Confidence            999999999999999999999999999999999999999999988764

>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]

Probab=98.97  E-value=4.3e-08  Score=92.12  Aligned_cols=148  Identities=16%  Similarity=0.175  Sum_probs=122.4

Q ss_pred             CCCHHHHHHHHHHHHHhhcCChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHHCCCcHHHH
Q 015851          218 FTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVI  297 (399)
Q Consensus       218 ~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~  297 (399)
                      ..+...+.+|+-++.+++..-...+..+-...+...|++++..++..+...++++|.|+.......+..++..|+++.+.
T Consensus       388 ~kd~~~~aaa~l~~~s~srsV~aL~tg~~~~dv~~plvqll~dp~~~i~~~~lgai~NlVmefs~~kskfl~~ngId~l~  467 (678)
T KOG1293|consen  388 IKDHDFVAAALLCLKSFSRSVSALRTGLKRNDVAQPLVQLLMDPEIMIMGITLGAICNLVMEFSNLKSKFLRNNGIDILE  467 (678)
T ss_pred             cccHHHHHHHHHHHHHHHHHHHHHHcCCccchhHHHHHHHhhCcchhHHHHHHHHHHHHHhhcccHHHHHHHcCcHHHHH
Confidence            34677888888888888864344444455567889999999999999999999999999987778889999999999999


Q ss_pred             HhhcCCChHHHHHHHHHHHHhhccChhhHHHHHhcCC-HHHHHHhhCCCCHHHHHHHHHHHHHhhccCC
Q 015851          298 GLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGA-VRPLIEMLQSPDVQLREMSAFALGRLAQVIT  365 (399)
Q Consensus       298 ~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~-v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~  365 (399)
                      +++.+.++.++..+.|+|.++.-.+++.++......+ ...+..+..++++.|++.+...|+|+..+..
T Consensus       468 s~~~~~~~n~r~~~~~~Lr~l~f~~de~~k~~~~~ki~a~~i~~l~nd~d~~Vqeq~fqllRNl~c~~~  536 (678)
T KOG1293|consen  468 SMLTDPDFNSRANSLWVLRHLMFNCDEEEKFQLLAKIPANLILDLINDPDWAVQEQCFQLLRNLTCNSR  536 (678)
T ss_pred             HHhcCCCchHHHHHHHHHHHHHhcchHHHHHHHHHHhhHHHHHHHHhCCCHHHHHHHHHHHHHhhcCcH
Confidence            9999999999999999999999766655554444333 3556667789999999999999999998854

>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.94  E-value=1e-07  Score=91.17  Aligned_cols=204  Identities=18%  Similarity=0.248  Sum_probs=167.0

Q ss_pred             HHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhhcCc------h------
Q 015851          131 EVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENS------S------  198 (399)
Q Consensus       131 ~~~~~a~~~L~~l~~~~~~~~~i~~~~~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~------~------  198 (399)
                      +=|+.|++.|..++  ..+|..+... +++++++.|+.+..++      ++...++.++.++..+++      .      
T Consensus        38 eDRR~A~rgLKa~s--rkYR~~Vga~-Gmk~li~vL~~D~~D~------E~ik~~LdTl~il~~~dd~~~v~dds~qsdd  108 (970)
T KOG0946|consen   38 EDRRDAVRGLKAFS--RKYREEVGAQ-GMKPLIQVLQRDYMDP------EIIKYALDTLLILTSHDDSPEVMDDSTQSDD  108 (970)
T ss_pred             hhHHHHHHHHHHHH--HHHHHHHHHc-ccHHHHHHHhhccCCH------HHHHHHHHHHHHHHhcCcchhhcccchhhhH
Confidence            56889999999998  4566665544 6999999999877655      899999999999997553      1      


Q ss_pred             ----hH-HHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhhcCCh-hhHHHHH-hcCCHHHHHHhhcCCCHHHHHHHHH
Q 015851          199 ----IK-TRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKND-ENKNQIV-ECNALPTLILMLRSEDSAIHYEAVG  271 (399)
Q Consensus       199 ----~~-~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~-~~~~~~~-~~~~~~~L~~ll~~~~~~v~~~a~~  271 (399)
                          +. ..+...+.|..++..+...|..||..+...|.++...-+ +.+..+. ..-+|..|+.+|.+..+.+|-.++.
T Consensus       109 ~g~~iae~fik~qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~DsrE~IRNe~iL  188 (970)
T KOG0946|consen  109 LGLWIAEQFIKNQDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLLRDSREPIRNEAIL  188 (970)
T ss_pred             HHHHHHHHHHcCchhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHhhhhhhhchhHHH
Confidence                11 233345789999999999999999999999999987544 3444444 3678999999999999999999999


Q ss_pred             HHHHhhcCChhHHHHHHHCCCcHHHHHhhcCC----ChHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHhhC
Q 015851          272 VIGNLVHSSPNIKKEVLAAGALQPVIGLLSSC----CSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQ  343 (399)
Q Consensus       272 ~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~----~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~v~~L~~ll~  343 (399)
                      .|+.++.+++...+.+.-.+++..|+.++...    ..-|.+.++..|.|+...+..++..+.+.+.+|.|.++|.
T Consensus       189 lL~eL~k~n~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N~SNQ~~FrE~~~i~rL~klL~  264 (970)
T KOG0946|consen  189 LLSELVKDNSSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNNISNQNFFREGSYIPRLLKLLS  264 (970)
T ss_pred             HHHHHHccCchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhCcchhhHHhccccHHHHHhhcC
Confidence            99999998888777777789999999999743    2357788999999999888889999999999999998885

>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=98.90  E-value=4.7e-08  Score=91.82  Aligned_cols=283  Identities=15%  Similarity=0.169  Sum_probs=177.4

Q ss_pred             hhHHHHhhhhhcchhhhHHHHHHHHHHHHHHcCChhHHHHHHhCCChHHHHhcccCCCCcccccCCCcchHHHHHHHHHH
Q 015851           60 SAQVNVLNTTFSWLEADRAAAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFA  139 (399)
Q Consensus        60 ~~~~~~L~~~l~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~~~~~a~~~  139 (399)
                      .-++|.+.++.+  ...+.+|..|+.++....-.....-.+.-...+..+..+-.++++            ++|.+.+.+
T Consensus       173 ~~mipkfl~f~~--h~spkiRs~A~~cvNq~i~~~~qal~~~iD~Fle~lFalanD~~~------------eVRk~vC~a  238 (885)
T KOG2023|consen  173 NIMIPKFLQFFK--HPSPKIRSHAVGCVNQFIIIQTQALYVHIDKFLEILFALANDEDP------------EVRKNVCRA  238 (885)
T ss_pred             HHhHHHHHHHHh--CCChhHHHHHHhhhhheeecCcHHHHHHHHHHHHHHHHHccCCCH------------HHHHHHHHH
Confidence            335555555553  347889999999998765432111112222356667776655555            899999999


Q ss_pred             HHHhc-CChhhHHHHHhcCcHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhhcCchhHHHHHh--cCChHHHHHhh
Q 015851          140 LGLLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRM--EGGIPPLVELL  216 (399)
Q Consensus       140 L~~l~-~~~~~~~~i~~~~~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~--~~~i~~L~~ll  216 (399)
                      |..|. ..++ +-.-.=.++++++++..++.++        ++...||.....++. .+-.+..+..  ...+|.|+.-+
T Consensus       239 lv~Llevr~d-kl~phl~~IveyML~~tqd~dE--------~VALEACEFwla~ae-qpi~~~~L~p~l~kliPvLl~~M  308 (885)
T KOG2023|consen  239 LVFLLEVRPD-KLVPHLDNIVEYMLQRTQDVDE--------NVALEACEFWLALAE-QPICKEVLQPYLDKLIPVLLSGM  308 (885)
T ss_pred             HHHHHHhcHH-hcccchHHHHHHHHHHccCcch--------hHHHHHHHHHHHHhc-CcCcHHHHHHHHHHHHHHHHccC
Confidence            99998 3332 1111123477777777777766        788889999999994 4444443332  25667666543


Q ss_pred             cCC--------------------------------------------------------CHHHHHHHHHHHHHhhcCChh
Q 015851          217 EFT--------------------------------------------------------DTKVQRAAAGALRTLAFKNDE  240 (399)
Q Consensus       217 ~~~--------------------------------------------------------~~~v~~~a~~~L~~L~~~~~~  240 (399)
                      ..+                                                        +..+|.-.+.+|..|+.   -
T Consensus       309 ~Ysd~D~~LL~~~eeD~~vpDreeDIkPRfhksk~~~~~~~~~~eDdddDe~DDdD~~~dWNLRkCSAAaLDVLan---v  385 (885)
T KOG2023|consen  309 VYSDDDIILLKNNEEDESVPDREEDIKPRFHKSKEHGNGEDADDEDDDDDEDDDDDAFSDWNLRKCSAAALDVLAN---V  385 (885)
T ss_pred             ccccccHHHhcCccccccCCchhhhccchhhhchhccCccccccccccccccccccccccccHhhccHHHHHHHHH---h
Confidence            211                                                        02334434444444442   1


Q ss_pred             hHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHHC--CCcHHHHHhhcCCChHHHHHHHHHHHHh
Q 015851          241 NKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAA--GALQPVIGLLSSCCSESQREAALLLGQF  318 (399)
Q Consensus       241 ~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~--~~l~~L~~lL~~~~~~v~~~a~~~L~~l  318 (399)
                      ....+... .+|.|-..|.+++-.+++.+.-+++.++.+.-.   -++.+  ..++.|+++|.+..+-+|.-.||+|+..
T Consensus       386 f~~elL~~-l~PlLk~~L~~~~W~vrEagvLAlGAIAEGcM~---g~~p~LpeLip~l~~~L~DKkplVRsITCWTLsRy  461 (885)
T KOG2023|consen  386 FGDELLPI-LLPLLKEHLSSEEWKVREAGVLALGAIAEGCMQ---GFVPHLPELIPFLLSLLDDKKPLVRSITCWTLSRY  461 (885)
T ss_pred             hHHHHHHH-HHHHHHHHcCcchhhhhhhhHHHHHHHHHHHhh---hcccchHHHHHHHHHHhccCccceeeeeeeeHhhh
Confidence            12222222 355555566677778999999999999865322   22222  3678889999999999999999999988


Q ss_pred             hccC-hhhHHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhccCCCCcchhHHH
Q 015851          319 AATD-SDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQVITVSVLPAILI  374 (399)
Q Consensus       319 ~~~~-~~~~~~l~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~  374 (399)
                      +..- .+.+..+... ++..|++.+-+++..|+++|+.+...+-++.....+|.+-.
T Consensus       462 s~wv~~~~~~~~f~p-vL~~ll~~llD~NK~VQEAAcsAfAtleE~A~~eLVp~l~~  517 (885)
T KOG2023|consen  462 SKWVVQDSRDEYFKP-VLEGLLRRLLDSNKKVQEAACSAFATLEEEAGEELVPYLEY  517 (885)
T ss_pred             hhhHhcCChHhhhHH-HHHHHHHHHhcccHHHHHHHHHHHHHHHHhccchhHHHHHH
Confidence            7431 1122222221 23444455557899999999999999999999876665433

>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.88  E-value=1.4e-07  Score=92.62  Aligned_cols=247  Identities=21%  Similarity=0.290  Sum_probs=182.6

Q ss_pred             hhhHHHHHHHHHHHHHHcCC-hhHHHHHHhCCChHHHHhcccCCCCcccccCCCcchHHHHHHHHHHHHHhcCChhhHHH
Q 015851           74 EADRAAAKRATHVLAELAKN-EEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQL  152 (399)
Q Consensus        74 ~~~~~~~~~a~~~L~~l~~~-~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~  152 (399)
                      +.+...+.-+--.+..+... ++... +    +++.+.+=|.++++            .+|..|+++|++++ +++..+.
T Consensus        53 s~~~~~Krl~yl~l~~~~~~~~~~~~-l----~~n~l~kdl~~~n~------------~~~~lAL~~l~~i~-~~~~~~~  114 (526)
T PF01602_consen   53 SKDLELKRLGYLYLSLYLHEDPELLI-L----IINSLQKDLNSPNP------------YIRGLALRTLSNIR-TPEMAEP  114 (526)
T ss_dssp             SSSHHHHHHHHHHHHHHTTTSHHHHH-H----HHHHHHHHHCSSSH------------HHHHHHHHHHHHH--SHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHhhcchhHHH-H----HHHHHHHhhcCCCH------------HHHHHHHhhhhhhc-ccchhhH
Confidence            45666677767777777764 55222 2    36666666666655            78889999999998 3444433


Q ss_pred             HHhcCcHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHH
Q 015851          153 IVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALR  232 (399)
Q Consensus       153 i~~~~~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~  232 (399)
                           .++.+.+++.+.++        .++..|+.++..+...++..   +... .++.+..++.+.++.++..|+.++.
T Consensus       115 -----l~~~v~~ll~~~~~--------~VRk~A~~~l~~i~~~~p~~---~~~~-~~~~l~~lL~d~~~~V~~~a~~~l~  177 (526)
T PF01602_consen  115 -----LIPDVIKLLSDPSP--------YVRKKAALALLKIYRKDPDL---VEDE-LIPKLKQLLSDKDPSVVSAALSLLS  177 (526)
T ss_dssp             -----HHHHHHHHHHSSSH--------HHHHHHHHHHHHHHHHCHCC---HHGG-HHHHHHHHTTHSSHHHHHHHHHHHH
T ss_pred             -----HHHHHHHHhcCCch--------HHHHHHHHHHHHHhccCHHH---HHHH-HHHHHhhhccCCcchhHHHHHHHHH
Confidence                 46788888887766        89999999999999776652   2223 6889999999999999999999999


Q ss_pred             HhhcCChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHHCCCcHHHHHhhcCCChHHHHHHH
Q 015851          233 TLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAA  312 (399)
Q Consensus       233 ~L~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~  312 (399)
                      .+ ..++.....+. ...++.|.+++...++-++..++.++..++...+.....   ..+++.+..++++.++.+..+++
T Consensus       178 ~i-~~~~~~~~~~~-~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~~~~~~~~~---~~~i~~l~~~l~s~~~~V~~e~~  252 (526)
T PF01602_consen  178 EI-KCNDDSYKSLI-PKLIRILCQLLSDPDPWLQIKILRLLRRYAPMEPEDADK---NRIIEPLLNLLQSSSPSVVYEAI  252 (526)
T ss_dssp             HH-HCTHHHHTTHH-HHHHHHHHHHHTCCSHHHHHHHHHHHTTSTSSSHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HH-ccCcchhhhhH-HHHHHHhhhcccccchHHHHHHHHHHHhcccCChhhhhH---HHHHHHHHHHhhccccHHHHHHH
Confidence            99 22333222111 224566666677889999999999999998654443311   34688889999988899999999


Q ss_pred             HHHHHhhccChhhHHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhccCCC
Q 015851          313 LLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQVITV  366 (399)
Q Consensus       313 ~~L~~l~~~~~~~~~~l~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~  366 (399)
                      .++..+... +.     .-..+++.|..++.++++.++..+..+|..++...+.
T Consensus       253 ~~i~~l~~~-~~-----~~~~~~~~L~~lL~s~~~nvr~~~L~~L~~l~~~~~~  300 (526)
T PF01602_consen  253 RLIIKLSPS-PE-----LLQKAINPLIKLLSSSDPNVRYIALDSLSQLAQSNPP  300 (526)
T ss_dssp             HHHHHHSSS-HH-----HHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHCCHCHH
T ss_pred             HHHHHhhcc-hH-----HHHhhHHHHHHHhhcccchhehhHHHHHHHhhcccch
Confidence            999988643 33     3344688999999999999999999999999988843

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.

>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=98.87  E-value=1.7e-07  Score=89.50  Aligned_cols=304  Identities=17%  Similarity=0.160  Sum_probs=200.6

Q ss_pred             hhhhhhccccCCCCCchHHHhHhhhhhhHHHHhhhhhcchhhhHHHHHHHHHHHHHHcCC-hhHHH-HHHhCCChHHHHh
Q 015851           34 MQQREISSSSAGTSSSDARQALLSEVSAQVNVLNTTFSWLEADRAAAKRATHVLAELAKN-EEVVN-WIVEGGAVPALVK  111 (399)
Q Consensus        34 ~~~~~~~~~~~l~~~~d~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~~a~~~L~~l~~~-~~~~~-~~~~~g~l~~L~~  111 (399)
                      .++..+.+....|.+.||.. .......++-.+.......+.+..+|..|+.+|.|-..- ..+.. ..-..-++...++
T Consensus       146 ~k~~slealGyice~i~pev-l~~~sN~iLtaIv~gmrk~e~s~~vRLaa~~aL~nsLef~~~nF~~E~ern~iMqvvcE  224 (859)
T KOG1241|consen  146 VKESSLEALGYICEDIDPEV-LEQQSNDILTAIVQGMRKEETSAAVRLAALNALYNSLEFTKANFNNEMERNYIMQVVCE  224 (859)
T ss_pred             HHHHHHHHHHHHHccCCHHH-HHHHHhHHHHHHHhhccccCCchhHHHHHHHHHHHHHHHHHHhhccHhhhceeeeeeee
Confidence            55666666666777888873 333334444433333433456677999999999986642 21111 2222234555666


Q ss_pred             cccCCCCcccccCCCcchHHHHHHHHHHHHHhc-CChhhHHHHHhcCcHHHHHHHHhccccCccccccHHHHHHHHHHHH
Q 015851          112 HLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAIT  190 (399)
Q Consensus       112 lL~~~~~~~~~~~~~~~~~~~~~~a~~~L~~l~-~~~~~~~~i~~~~~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~  190 (399)
                      .-.+++.            +++..|..+|..+. -+-+..+.-+....+..-+..+++.++        ++..++...-+
T Consensus       225 atq~~d~------------~i~~aa~~ClvkIm~LyY~~m~~yM~~alfaitl~amks~~d--------eValQaiEFWs  284 (859)
T KOG1241|consen  225 ATQSPDE------------EIQVAAFQCLVKIMSLYYEFMEPYMEQALFAITLAAMKSDND--------EVALQAIEFWS  284 (859)
T ss_pred             cccCCcH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcH--------HHHHHHHHHHH
Confidence            6666555            89999999999988 455555544444455666666776655        77777887777


Q ss_pred             HHhhcCch----------------hHHH--HHhcCChHHHHHhhcC-------CCHHHHHHHHHHHHHhhcCChhhHHHH
Q 015851          191 NLAHENSS----------------IKTR--VRMEGGIPPLVELLEF-------TDTKVQRAAAGALRTLAFKNDENKNQI  245 (399)
Q Consensus       191 ~l~~~~~~----------------~~~~--~~~~~~i~~L~~ll~~-------~~~~v~~~a~~~L~~L~~~~~~~~~~~  245 (399)
                      ++|...-.                ....  -...+++|.|+++|..       +++.....|..||.-.+..   ....+
T Consensus       285 ticeEEiD~~~e~~e~~d~~~~p~~~~fa~~a~~~v~P~Ll~~L~kqde~~d~DdWnp~kAAg~CL~l~A~~---~~D~I  361 (859)
T KOG1241|consen  285 TICEEEIDLAIEYGEAVDQGLPPSSKYFARQALQDVVPVLLELLTKQDEDDDDDDWNPAKAAGVCLMLFAQC---VGDDI  361 (859)
T ss_pred             HHHHHHHHHHHHHHHHhhcCCCchhhHHHHHHHhHhhHHHHHHHHhCCCCcccccCcHHHHHHHHHHHHHHH---hcccc
Confidence            77742211                0110  1123667889998865       2356677777777766642   11223


Q ss_pred             HhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHHCCCcHHHHHhhcCCChHHHHHHHHHHHHhhccChhh
Q 015851          246 VECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDC  325 (399)
Q Consensus       246 ~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~  325 (399)
                      +. .++|.+-.-+++++-.-+..|+.+++.+-.+.+..+-.-+..++++.++.++.+++.-++..++|+++.++...++.
T Consensus       362 v~-~Vl~Fiee~i~~pdwr~reaavmAFGSIl~gp~~~~Lt~iV~qalp~ii~lm~D~sl~VkdTaAwtlgrI~d~l~e~  440 (859)
T KOG1241|consen  362 VP-HVLPFIEENIQNPDWRNREAAVMAFGSILEGPEPDKLTPIVIQALPSIINLMSDPSLWVKDTAAWTLGRIADFLPEA  440 (859)
T ss_pred             hh-hhHHHHHHhcCCcchhhhhHHHHHHHhhhcCCchhhhhHHHhhhhHHHHHHhcCchhhhcchHHHHHHHHHhhchhh
Confidence            33 35555555777888899999999999999876666666777899999999999888889999999999999776643


Q ss_pred             HH-HHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhcc
Q 015851          326 KV-HIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQV  363 (399)
Q Consensus       326 ~~-~l~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~  363 (399)
                      +- .......++.++.-+++ .|.+..+++|++.+|+..
T Consensus       441 ~~n~~~l~~~l~~l~~gL~D-ePrva~N~CWAf~~Laea  478 (859)
T KOG1241|consen  441 IINQELLQSKLSALLEGLND-EPRVASNVCWAFISLAEA  478 (859)
T ss_pred             cccHhhhhHHHHHHHHHhhh-CchHHHHHHHHHHHHHHH
Confidence            22 22234445556555554 899999999999999943

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=98.84  E-value=2.4e-07  Score=91.29  Aligned_cols=228  Identities=14%  Similarity=0.129  Sum_probs=185.0

Q ss_pred             HHHHHHHHHHHhc-CChhhHHHHHhcCcHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhhcCchhHHHHHhcCChH
Q 015851          132 VEKGSAFALGLLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIP  210 (399)
Q Consensus       132 ~~~~a~~~L~~l~-~~~~~~~~i~~~~~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~  210 (399)
                      -|..|+..|+.+- ..|-....-..-|++|+++++|++...        +++.....+-..+...++.++..+++.++-.
T Consensus       486 HRlRAL~LL~RFLDlGpWAV~LaLsVGIFPYVLKLLQS~a~--------ELrpiLVFIWAKILAvD~SCQ~dLvKe~g~~  557 (1387)
T KOG1517|consen  486 HRLRALVLLARFLDLGPWAVDLALSVGIFPYVLKLLQSSAR--------ELRPILVFIWAKILAVDPSCQADLVKENGYK  557 (1387)
T ss_pred             HHHHHHHHHHHHhccchhhhhhhhccchHHHHHHHhccchH--------hhhhhHHHHHHHHHhcCchhHHHHHhccCce
Confidence            3566788888877 677777777788999999999998877        7877777777777777888998888888888


Q ss_pred             HHHHhhcC-C--CHHHHHHHHHHHHHhhcCChhhHHHHHhcCCHHHHHHhhcCC-CHHHHHHHHHHHHHhhcCChhHHHH
Q 015851          211 PLVELLEF-T--DTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSE-DSAIHYEAVGVIGNLVHSSPNIKKE  286 (399)
Q Consensus       211 ~L~~ll~~-~--~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~L~~ll~~~-~~~v~~~a~~~L~~l~~~~~~~~~~  286 (399)
                      .++..|.. .  +++-+..|+.+|+.++.+.+-+++...+.+.+...+..|+++ .+-++..++-+|+.|-.+.+..+-.
T Consensus       558 YF~~vL~~~~~~~~EqrtmaAFVLAviv~nf~lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~  637 (1387)
T KOG1517|consen  558 YFLQVLDPSQAIPPEQRTMAAFVLAVIVRNFKLGQKACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEARWS  637 (1387)
T ss_pred             eEEEEecCcCCCCHHHHHHHHHHHHHHHcccchhHHHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchhhhc
Confidence            88888876 3  368999999999999998888899999999999999999885 6889999999999999877777666


Q ss_pred             HHHCCCcHHHHHhhcCCChHHHHHHHHHHHHhhccC----hhhHHHH-----------HhcCCH----HHHHHhhCCCCH
Q 015851          287 VLAAGALQPVIGLLSSCCSESQREAALLLGQFAATD----SDCKVHI-----------VQRGAV----RPLIEMLQSPDV  347 (399)
Q Consensus       287 ~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~----~~~~~~l-----------~~~g~v----~~L~~ll~~~~~  347 (399)
                      -...++...|+.+|..+-++||..|+++|+.+....    ++....+           .-...+    ..++.+++++++
T Consensus       638 G~r~~AhekL~~~LsD~vpEVRaAAVFALgtfl~~~~d~fde~~~~~~~~~~l~~~~~~~E~~i~~~~~~ll~~vsdgsp  717 (1387)
T KOG1517|consen  638 GRRDNAHEKLILLLSDPVPEVRAAAVFALGTFLSNGSDNFDEQTLVVEEEIDLDDERTSIEDLIIKGLMSLLALVSDGSP  717 (1387)
T ss_pred             cccccHHHHHHHHhcCccHHHHHHHHHHHHHHhcccccccchhhhhhhhhhcchhhhhhHHHHHHhhHHHHHHHHhccch
Confidence            678889999999999999999999999999998742    2211111           011222    267777788999


Q ss_pred             HHHHHHHHHHHHhhccCCCC
Q 015851          348 QLREMSAFALGRLAQVITVS  367 (399)
Q Consensus       348 ~v~~~a~~~L~~l~~~~~~~  367 (399)
                      -++.+.+.+|..++......
T Consensus       718 lvr~ev~v~ls~~~~g~~~~  737 (1387)
T KOG1517|consen  718 LVRTEVVVALSHFVVGYVSH  737 (1387)
T ss_pred             HHHHHHHHHHHHHHHhhHHH
Confidence            99999999999988766543

>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.83  E-value=4.4e-06  Score=80.38  Aligned_cols=286  Identities=18%  Similarity=0.187  Sum_probs=212.1

Q ss_pred             HHHHhhhhhcchhhhHHHHHHHHHHHHHHcCChh-----------------HHHHHH-hCCChHHHHhcccCCCCccccc
Q 015851           62 QVNVLNTTFSWLEADRAAAKRATHVLAELAKNEE-----------------VVNWIV-EGGAVPALVKHLQAPPTSEADR  123 (399)
Q Consensus        62 ~~~~L~~~l~~~~~~~~~~~~a~~~L~~l~~~~~-----------------~~~~~~-~~g~l~~L~~lL~~~~~~~~~~  123 (399)
                      -++-|...+..+-.|++....++.++.++..+.+                 ..+.|+ ..+.|..+++++...+.     
T Consensus        62 Gmk~li~vL~~D~~D~E~ik~~LdTl~il~~~dd~~~v~dds~qsdd~g~~iae~fik~qd~I~lll~~~e~~DF-----  136 (970)
T KOG0946|consen   62 GMKPLIQVLQRDYMDPEIIKYALDTLLILTSHDDSPEVMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSLEEFDF-----  136 (970)
T ss_pred             ccHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCcchhhcccchhhhHHHHHHHHHHHcCchhHHHHHHHHHhhch-----
Confidence            3444445554466788899999999999877431                 122233 45889999999987666     


Q ss_pred             CCCcchHHHHHHHHHHHHHhc--CChhhHHHHHh-cCcHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhhcCchhH
Q 015851          124 NLKPFEHEVEKGSAFALGLLA--VKPEHQQLIVD-NGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIK  200 (399)
Q Consensus       124 ~~~~~~~~~~~~a~~~L~~l~--~~~~~~~~i~~-~~~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~  200 (399)
                             -+|..+...|.++-  ..++.+..+.. .-+|..++.+|.+..+        .++-.++..|..+..+++.++
T Consensus       137 -------~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~DsrE--------~IRNe~iLlL~eL~k~n~~IQ  201 (970)
T KOG0946|consen  137 -------HVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLLRDSRE--------PIRNEAILLLSELVKDNSSIQ  201 (970)
T ss_pred             -------hhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHhhhhh--------hhchhHHHHHHHHHccCchHH
Confidence                   68889999999987  56677777654 5689999999998876        677889999999999999999


Q ss_pred             HHHHhcCChHHHHHhhcCCC----HHHHHHHHHHHHHhhcCChhhHHHHHhcCCHHHHHHhhcC---CCHH---------
Q 015851          201 TRVRMEGGIPPLVELLEFTD----TKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRS---EDSA---------  264 (399)
Q Consensus       201 ~~~~~~~~i~~L~~ll~~~~----~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~L~~ll~~---~~~~---------  264 (399)
                      ..+.=.+++..|..++..+-    .-|...++..|.||...+..+...+.+.+.+|.|.++|..   .+.+         
T Consensus       202 KlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N~SNQ~~FrE~~~i~rL~klL~~f~~~d~Ev~~W~~Qrv  281 (970)
T KOG0946|consen  202 KLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNNISNQNFFREGSYIPRLLKLLSVFEFGDGEVFGWSTQRV  281 (970)
T ss_pred             HHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhCcchhhHHhccccHHHHHhhcCcccccCcccccccHHHH
Confidence            87777789999999997642    3578999999999999889999999999999999988863   2311         


Q ss_pred             -HHHHHHHHHHHhhcCC------hhHHHHHHHCCCcHHHHHhhcCC--ChHHHHHHHHHHHHhhccChhhHHHHHhcCC-
Q 015851          265 -IHYEAVGVIGNLVHSS------PNIKKEVLAAGALQPVIGLLSSC--CSESQREAALLLGQFAATDSDCKVHIVQRGA-  334 (399)
Q Consensus       265 -v~~~a~~~L~~l~~~~------~~~~~~~~~~~~l~~L~~lL~~~--~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~-  334 (399)
                       -...++.++..+....      ..+...+...+++..|..++-++  ..+++.++..+++++..++..++..+.+..+ 
T Consensus       282 ~Nv~~~Lqivr~lVsP~Nt~~~~~q~qk~l~ss~ll~~Lc~il~~~~vp~dIltesiitvAevVRgn~~nQ~~F~~v~~p  361 (970)
T KOG0946|consen  282 QNVIEALQIVRSLVSPGNTSSITHQNQKALVSSHLLDVLCTILMHPGVPADILTESIITVAEVVRGNARNQDEFADVTAP  361 (970)
T ss_pred             HHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcchHHHHHHHHcCCCCcHhHHHHHHHHHHHHHHhchHHHHHHhhccCC
Confidence             1234556666665311      12334566788999999888765  4489999999999999988888887765211 


Q ss_pred             ---------HHHHHHhhC-CCCHHHHHHHHHHHHHhhccCCCC
Q 015851          335 ---------VRPLIEMLQ-SPDVQLREMSAFALGRLAQVITVS  367 (399)
Q Consensus       335 ---------v~~L~~ll~-~~~~~v~~~a~~~L~~l~~~~~~~  367 (399)
                               +-.+..+.. ...+..|.++..++..+..+...+
T Consensus       362 ~~~~Pr~sivvllmsm~ne~q~~~lRcAv~ycf~s~l~dN~~g  404 (970)
T KOG0946|consen  362 SIPNPRPSIVVLLMSMFNEKQPFSLRCAVLYCFRSYLYDNDDG  404 (970)
T ss_pred             CCCCCccchhHHHHHHHhccCCchHHHHHHHHHHHHHhcchhh
Confidence                     112233333 356778888888888887766653

>PTZ00429 beta-adaptin; Provisional

Probab=98.81  E-value=4.2e-06  Score=83.43  Aligned_cols=257  Identities=17%  Similarity=0.117  Sum_probs=158.6

Q ss_pred             HHHhhhhhcchhhhHHHHHHHHHHHHHHcC-ChhHHHHHHhCCChHHHHhcccCCCCcccccCCCcchHHHHHHHHHHHH
Q 015851           63 VNVLNTTFSWLEADRAAAKRATHVLAELAK-NEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALG  141 (399)
Q Consensus        63 ~~~L~~~l~~~~~~~~~~~~a~~~L~~l~~-~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~~~~~a~~~L~  141 (399)
                      ++.+.+.+  .+.++.+|..|+.++.++.. +|+.   +.+.|.++.|.++|.+.++            .+..+|+.+|.
T Consensus       142 ~~~lkk~L--~D~~pYVRKtAalai~Kly~~~pel---v~~~~~~~~L~~LL~D~dp------------~Vv~nAl~aL~  204 (746)
T PTZ00429        142 LEPLRRAV--ADPDPYVRKTAAMGLGKLFHDDMQL---FYQQDFKKDLVELLNDNNP------------VVASNAAAIVC  204 (746)
T ss_pred             HHHHHHHh--cCCCHHHHHHHHHHHHHHHhhCccc---ccccchHHHHHHHhcCCCc------------cHHHHHHHHHH
Confidence            33344444  56778899999999999876 3532   3456788889998887776            68889999999


Q ss_pred             Hhc-CChhhHHHHHhcCcHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhhcCCC
Q 015851          142 LLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTD  220 (399)
Q Consensus       142 ~l~-~~~~~~~~i~~~~~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~  220 (399)
                      .+. .++..-  -...+.+..++..+...++        =.+...+.+|...   .+.....  ....+..+...|++.+
T Consensus       205 eI~~~~~~~l--~l~~~~~~~Ll~~L~e~~E--------W~Qi~IL~lL~~y---~P~~~~e--~~~il~~l~~~Lq~~N  269 (746)
T PTZ00429        205 EVNDYGSEKI--ESSNEWVNRLVYHLPECNE--------WGQLYILELLAAQ---RPSDKES--AETLLTRVLPRMSHQN  269 (746)
T ss_pred             HHHHhCchhh--HHHHHHHHHHHHHhhcCCh--------HHHHHHHHHHHhc---CCCCcHH--HHHHHHHHHHHhcCCC
Confidence            998 444321  2233456667777765544        3444444444332   2211111  1345777888899999


Q ss_pred             HHHHHHHHHHHHHhhcCC-hhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHHCCCcHHHHHh
Q 015851          221 TKVQRAAAGALRTLAFKN-DENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGL  299 (399)
Q Consensus       221 ~~v~~~a~~~L~~L~~~~-~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~l  299 (399)
                      +.|.-.|++++.++.... ++....... ...+.++.++ +++++++..++..|.-+....+..    +... +..+.-.
T Consensus       270 ~AVVl~Aik~il~l~~~~~~~~~~~~~~-rl~~pLv~L~-ss~~eiqyvaLr~I~~i~~~~P~l----f~~~-~~~Ff~~  342 (746)
T PTZ00429        270 PAVVMGAIKVVANLASRCSQELIERCTV-RVNTALLTLS-RRDAETQYIVCKNIHALLVIFPNL----LRTN-LDSFYVR  342 (746)
T ss_pred             HHHHHHHHHHHHHhcCcCCHHHHHHHHH-HHHHHHHHhh-CCCccHHHHHHHHHHHHHHHCHHH----HHHH-HHhhhcc
Confidence            999999999999998632 222222221 1335566664 567889998988887776544322    1111 2222222


Q ss_pred             hcCCChHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhccCCC
Q 015851          300 LSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQVITV  366 (399)
Q Consensus       300 L~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~  366 (399)
                      .+. +..++...+.+|..++  ++.+...++     ..|.....+.+.+.++.++.++++++...+.
T Consensus       343 ~~D-p~yIK~~KLeIL~~La--ne~Nv~~IL-----~EL~eYa~d~D~ef~r~aIrAIg~lA~k~~~  401 (746)
T PTZ00429        343 YSD-PPFVKLEKLRLLLKLV--TPSVAPEIL-----KELAEYASGVDMVFVVEVVRAIASLAIKVDS  401 (746)
T ss_pred             cCC-cHHHHHHHHHHHHHHc--CcccHHHHH-----HHHHHHhhcCCHHHHHHHHHHHHHHHHhChH
Confidence            232 3357777777777776  344444433     4455666666777777777777777765553

>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=98.80  E-value=6.1e-07  Score=85.80  Aligned_cols=287  Identities=12%  Similarity=0.108  Sum_probs=190.0

Q ss_pred             hhhhhHHHHhhhhhcchhhhHHHHHHHHHHHHHHcCC--hhHHHHHHhCCChHHHHhcccCCCCcccccCCCcchHHHHH
Q 015851           57 SEVSAQVNVLNTTFSWLEADRAAAKRATHVLAELAKN--EEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEK  134 (399)
Q Consensus        57 ~~~~~~~~~L~~~l~~~~~~~~~~~~a~~~L~~l~~~--~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~~~~  134 (399)
                      ..+|.+++.|++...... ...++..++++|+-++.+  |+. -.-....++..+++.....++.          ..+|.
T Consensus       125 n~wp~li~~lv~nv~~~~-~~~~k~~slealGyice~i~pev-l~~~sN~iLtaIv~gmrk~e~s----------~~vRL  192 (859)
T KOG1241|consen  125 NQWPELIVTLVSNVGEEQ-ASMVKESSLEALGYICEDIDPEV-LEQQSNDILTAIVQGMRKEETS----------AAVRL  192 (859)
T ss_pred             hhCHHHHHHHHHhccccc-chHHHHHHHHHHHHHHccCCHHH-HHHHHhHHHHHHHhhccccCCc----------hhHHH
Confidence            467888888776653222 225889999999999996  552 2222446777788877765552          27899


Q ss_pred             HHHHHHHHhc-CChhh-HHHHHhcCcHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHH
Q 015851          135 GSAFALGLLA-VKPEH-QQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPL  212 (399)
Q Consensus       135 ~a~~~L~~l~-~~~~~-~~~i~~~~~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L  212 (399)
                      .|+.+|.|-- ....+ ....-..-+++..++.-+.++.        +++..++.+|..+..-.-..-........+..-
T Consensus       193 aa~~aL~nsLef~~~nF~~E~ern~iMqvvcEatq~~d~--------~i~~aa~~ClvkIm~LyY~~m~~yM~~alfait  264 (859)
T KOG1241|consen  193 AALNALYNSLEFTKANFNNEMERNYIMQVVCEATQSPDE--------EIQVAAFQCLVKIMSLYYEFMEPYMEQALFAIT  264 (859)
T ss_pred             HHHHHHHHHHHHHHHhhccHhhhceeeeeeeecccCCcH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999998865 11111 1111112234444444444444        899999999998886443333323334456666


Q ss_pred             HHhhcCCCHHHHHHHHHHHHHhhcCChhhH---HHHHh---------------cCCHHHHHHhhcCC-------CHHHHH
Q 015851          213 VELLEFTDTKVQRAAAGALRTLAFKNDENK---NQIVE---------------CNALPTLILMLRSE-------DSAIHY  267 (399)
Q Consensus       213 ~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~---~~~~~---------------~~~~~~L~~ll~~~-------~~~v~~  267 (399)
                      +.-++++++++...+.....+++...-+..   ....+               .+++|.|+.+|...       +-....
T Consensus       265 l~amks~~deValQaiEFWsticeEEiD~~~e~~e~~d~~~~p~~~~fa~~a~~~v~P~Ll~~L~kqde~~d~DdWnp~k  344 (859)
T KOG1241|consen  265 LAAMKSDNDEVALQAIEFWSTICEEEIDLAIEYGEAVDQGLPPSSKYFARQALQDVVPVLLELLTKQDEDDDDDDWNPAK  344 (859)
T ss_pred             HHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhHHHHHHHhHhhHHHHHHHHhCCCCcccccCcHHH
Confidence            777889999999999999998885211100   11111               35678888888541       225667


Q ss_pred             HHHHHHHHhhcCChhHHHHHHHCCCcHHHHHhhcCCChHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHhhCCCCH
Q 015851          268 EAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDV  347 (399)
Q Consensus       268 ~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~v~~L~~ll~~~~~  347 (399)
                      .|..||.-++....+.   ++. .+++.+-+-+++++..-+..|+.+++.+..+....+..-...+++|.++.++.+++-
T Consensus       345 AAg~CL~l~A~~~~D~---Iv~-~Vl~Fiee~i~~pdwr~reaavmAFGSIl~gp~~~~Lt~iV~qalp~ii~lm~D~sl  420 (859)
T KOG1241|consen  345 AAGVCLMLFAQCVGDD---IVP-HVLPFIEENIQNPDWRNREAAVMAFGSILEGPEPDKLTPIVIQALPSIINLMSDPSL  420 (859)
T ss_pred             HHHHHHHHHHHHhccc---chh-hhHHHHHHhcCCcchhhhhHHHHHHHhhhcCCchhhhhHHHhhhhHHHHHHhcCchh
Confidence            7777777776432221   211 344555556778999999999999999987644555555567789999999999889


Q ss_pred             HHHHHHHHHHHHhhccCCCC
Q 015851          348 QLREMSAFALGRLAQVITVS  367 (399)
Q Consensus       348 ~v~~~a~~~L~~l~~~~~~~  367 (399)
                      -++..+.|+++.++..-+..
T Consensus       421 ~VkdTaAwtlgrI~d~l~e~  440 (859)
T KOG1241|consen  421 WVKDTAAWTLGRIADFLPEA  440 (859)
T ss_pred             hhcchHHHHHHHHHhhchhh
Confidence            99999999999999888764

>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]

Probab=98.70  E-value=1.7e-07  Score=70.48  Aligned_cols=134  Identities=19%  Similarity=0.224  Sum_probs=110.6

Q ss_pred             CcHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhhc
Q 015851          157 GALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAF  236 (399)
Q Consensus       157 ~~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~  236 (399)
                      +++..|+.-.....+.       +.++....-|.|.+ .+|.....+.+..++..++..+..++..+...+.+.|+|+|.
T Consensus        16 ~Ylq~LV~efq~tt~~-------eakeqv~ANLANFA-YDP~Nys~Lrql~vLdlFvdsl~e~ne~LvefgIgglCNlC~   87 (173)
T KOG4646|consen   16 EYLQHLVDEFQTTTNI-------EAKEQVTANLANFA-YDPINYSHLRQLDVLDLFVDSLEEQNELLVEFGIGGLCNLCL   87 (173)
T ss_pred             HHHHHHHHHHHHhccH-------HHHHHHHHHHHhhc-cCcchHHHHHHhhHHHHHHHHhhcccHHHHHHhHHHHHhhcc
Confidence            3566666666555443       88899999999999 477777788899999999999999999999999999999998


Q ss_pred             CChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHHCCCcHHHHHh
Q 015851          237 KNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGL  299 (399)
Q Consensus       237 ~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~l  299 (399)
                       .+.+.+.+.+.+++|.++..++++...+...|+.++..++.+....+..+....+++.+..+
T Consensus        88 -d~~n~~~I~ea~g~plii~~lssp~e~tv~sa~~~l~~l~~~~Rt~r~ell~p~Vv~~v~r~  149 (173)
T KOG4646|consen   88 -DKTNAKFIREALGLPLIIFVLSSPPEITVHSAALFLQLLEFGERTERDELLSPAVVRTVQRW  149 (173)
T ss_pred             -ChHHHHHHHHhcCCceEEeecCCChHHHHHHHHHHHHHhcCcccchhHHhccHHHHHHHHHH
Confidence             78899999999999999999999999999999999999987665666666544444444444

>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]

Probab=98.59  E-value=8.4e-07  Score=66.82  Aligned_cols=118  Identities=16%  Similarity=0.201  Sum_probs=103.0

Q ss_pred             HHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhhcCchhHHHHHhcCChH
Q 015851          131 EVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIP  210 (399)
Q Consensus       131 ~~~~~a~~~L~~l~~~~~~~~~i~~~~~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~  210 (399)
                      +.+++...-|+|++.+|.+-..+.+.+.+..++..|...++        .+.+.+...|.|+| -++.....+...+++|
T Consensus        32 eakeqv~ANLANFAYDP~Nys~Lrql~vLdlFvdsl~e~ne--------~LvefgIgglCNlC-~d~~n~~~I~ea~g~p  102 (173)
T KOG4646|consen   32 EAKEQVTANLANFAYDPINYSHLRQLDVLDLFVDSLEEQNE--------LLVEFGIGGLCNLC-LDKTNAKFIREALGLP  102 (173)
T ss_pred             HHHHHHHHHHHhhccCcchHHHHHHhhHHHHHHHHhhcccH--------HHHHHhHHHHHhhc-cChHHHHHHHHhcCCc
Confidence            78899999999999999999999999999999999998877        88999999999999 5666777799999999


Q ss_pred             HHHHhhcCCCHHHHHHHHHHHHHhhcCChhhHHHHHhcCCHHHHHHh
Q 015851          211 PLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILM  257 (399)
Q Consensus       211 ~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~L~~l  257 (399)
                      .++..++++...+...++.++..|+.+....+..+....++..+...
T Consensus       103 lii~~lssp~e~tv~sa~~~l~~l~~~~Rt~r~ell~p~Vv~~v~r~  149 (173)
T KOG4646|consen  103 LIIFVLSSPPEITVHSAALFLQLLEFGERTERDELLSPAVVRTVQRW  149 (173)
T ss_pred             eEEeecCCChHHHHHHHHHHHHHhcCcccchhHHhccHHHHHHHHHH
Confidence            99999999999999999999999998777777777776555554443

>KOG2973 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.59  E-value=2.7e-05  Score=67.25  Aligned_cols=266  Identities=16%  Similarity=0.165  Sum_probs=177.6

Q ss_pred             hhhhHHHHHHHHHHHHHHcCChhHHHHH-HhCCChHHHHhcccCCCCcccccCCCcchHHHHHHHHHHHHHhcCChhhHH
Q 015851           73 LEADRAAAKRATHVLAELAKNEEVVNWI-VEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQ  151 (399)
Q Consensus        73 ~~~~~~~~~~a~~~L~~l~~~~~~~~~~-~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~  151 (399)
                      .+.++.+|..|+..+..+... ..+... .+.-.++.+.+++......              +.|+.+|.|++.++..+.
T Consensus        13 ~~~sP~v~~~AV~~l~~lt~~-~~~~~~~~~~~~lk~l~qL~~~~~~~--------------~~a~~alVnlsq~~~l~~   77 (353)
T KOG2973|consen   13 HSLSPPVRKAAVEHLLGLTGR-GLQSLSKYSEALLKDLTQLLKDLDPA--------------EPAATALVNLSQKEELRK   77 (353)
T ss_pred             ccCChHHHHHHHHHHhhcccc-chhhhccchhhhHHHHHHHccCcccc--------------cHHHHHHHHHHhhHHHHH
Confidence            345677899999999998877 222222 1335778899999876651              279999999999999999


Q ss_pred             HHHhcCcHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhhcCchhHHHHHh------cCChHHHHHhhcCCCH--HH
Q 015851          152 LIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRM------EGGIPPLVELLEFTDT--KV  223 (399)
Q Consensus       152 ~i~~~~~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~------~~~i~~L~~ll~~~~~--~v  223 (399)
                      .+... .+..++..+.+...        .+....|..|.|+++.+.........      .+.+.........+-.  .-
T Consensus        78 ~ll~~-~~k~l~~~~~~p~~--------~lad~~cmlL~NLs~~~~~~~~ll~~~~~~~~~~lm~l~~~~~d~~~n~~a~  148 (353)
T KOG2973|consen   78 KLLQD-LLKVLMDMLTDPQS--------PLADLICMLLSNLSRDDDEVAALLTNLTEKKDSGLMRLARAFCDKSYNAYAE  148 (353)
T ss_pred             HHHHH-HHHHHHHHhcCccc--------chHHHHHHHHHHhccCchHHHHHHHhcccccccchHHHHHHHhCcccccccc
Confidence            88876 77777777776655        67788999999999866655443322      2334444444443322  23


Q ss_pred             HHHHHHHHHHhhcCChhhHHHHHhcCCHHH-HHHhhcCCCHHHHH-HHHHHHHHhhcCChhHHHHHHHC--CCcHHH---
Q 015851          224 QRAAAGALRTLAFKNDENKNQIVECNALPT-LILMLRSEDSAIHY-EAVGVIGNLVHSSPNIKKEVLAA--GALQPV---  296 (399)
Q Consensus       224 ~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~-L~~ll~~~~~~v~~-~a~~~L~~l~~~~~~~~~~~~~~--~~l~~L---  296 (399)
                      ....+..+.||+. .+.++..+.+...++. -+.-+.+.+..+|. ..+++|.|.|...... ..+++.  +.++.+   
T Consensus       149 f~ylA~vf~nls~-~~~gR~l~~~~k~~p~~kll~ft~~~s~vRr~GvagtlkN~cFd~~~h-~~lL~e~~~lLp~iLlP  226 (353)
T KOG2973|consen  149 FHYLAPVFANLSQ-FEAGRKLLLEPKRFPDQKLLPFTSEDSQVRRGGVAGTLKNCCFDAKLH-EVLLDESINLLPAILLP  226 (353)
T ss_pred             hhHHHHHHHHHhh-hhhhhhHhcchhhhhHhhhhcccccchhhhccchHHHHHhhhccchhH-HHHhcchHHHHHHHHhh
Confidence            4566778999998 6888888887654332 12223334556654 5678888988653332 233321  112221   


Q ss_pred             ------------------HHhhc-----CCChHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHhhC-CCCHHHHHH
Q 015851          297 ------------------IGLLS-----SCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQ-SPDVQLREM  352 (399)
Q Consensus       297 ------------------~~lL~-----~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~v~~L~~ll~-~~~~~v~~~  352 (399)
                                        +++|.     .+++.++..-+.+|.-+|.. ..+|+.+.+.|+-+.+..+=+ .+++++++.
T Consensus       227 lagpee~sEEdm~~LP~eLQyLp~dKeRepdpdIrk~llEai~lLcaT-~~GRe~lR~kgvYpilRElhk~e~ded~~~a  305 (353)
T KOG2973|consen  227 LAGPEELSEEDMAKLPVELQYLPEDKEREPDPDIRKMLLEALLLLCAT-RAGREVLRSKGVYPILRELHKWEEDEDIREA  305 (353)
T ss_pred             cCCccccCHHHHhcCCHhhhcCCccccCCCChHHHHHHHHHHHHHHhh-hHhHHHHHhcCchHHHHHHhcCCCcHHHHHH
Confidence                              24443     34678999999999999964 788999999888777766654 468888888


Q ss_pred             HHHHHHHhhccCC
Q 015851          353 SAFALGRLAQVIT  365 (399)
Q Consensus       353 a~~~L~~l~~~~~  365 (399)
                      +-.....+.+..+
T Consensus       306 ce~vvq~Lv~~e~  318 (353)
T KOG2973|consen  306 CEQVVQMLVRLEP  318 (353)
T ss_pred             HHHHHHHHHhccc
Confidence            8888877777554

>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.57  E-value=2.3e-05  Score=75.82  Aligned_cols=310  Identities=15%  Similarity=0.211  Sum_probs=178.6

Q ss_pred             hhHHHHhhhhhcchhhhHHHHHHHHHHHHHHcC-ChhHHHHHHhCCChHHHHhcccCCCCcccccCCCcchHHHHHHHHH
Q 015851           60 SAQVNVLNTTFSWLEADRAAAKRATHVLAELAK-NEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAF  138 (399)
Q Consensus        60 ~~~~~~L~~~l~~~~~~~~~~~~a~~~L~~l~~-~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~~~~~a~~  138 (399)
                      +.+.|-+.+++  +..++.+|.+|+-|...+-. .|+....|     ++...++|.+.+..            +...++.
T Consensus       141 rdlapeVe~Ll--~~~~~~irKKA~Lca~r~irK~P~l~e~f-----~~~~~~lL~ek~hG------------VL~~~l~  201 (866)
T KOG1062|consen  141 RDLAPEVERLL--QHRDPYIRKKAALCAVRFIRKVPDLVEHF-----VIAFRKLLCEKHHG------------VLIAGLH  201 (866)
T ss_pred             HHhhHHHHHHH--hCCCHHHHHHHHHHHHHHHHcCchHHHHh-----hHHHHHHHhhcCCc------------eeeeHHH
Confidence            33444444554  23567788888888877766 36655444     56666777766653            3346667


Q ss_pred             HHHHhc-CChhhHHHHHhcCcHHHHHHHHhccccC-------ccccccHHHHHHHHHHHHHHhhcCchhHHHHHhc----
Q 015851          139 ALGLLA-VKPEHQQLIVDNGALSHLVNLLKRHMDS-------NCSRAVNSVIRRAADAITNLAHENSSIKTRVRME----  206 (399)
Q Consensus       139 ~L~~l~-~~~~~~~~i~~~~~i~~L~~~L~~~~~~-------~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~----  206 (399)
                      .+..+| .+++.-..+.+  .++.++..|+.-...       ....+..-++...++.|.-|-+.++...+.+.+-    
T Consensus       202 l~~e~c~~~~~~l~~fr~--l~~~lV~iLk~l~~~~yspeydv~gi~dPFLQi~iLrlLriLGq~d~daSd~M~DiLaqv  279 (866)
T KOG1062|consen  202 LITELCKISPDALSYFRD--LVPSLVKILKQLTNSGYSPEYDVHGISDPFLQIRILRLLRILGQNDADASDLMNDILAQV  279 (866)
T ss_pred             HHHHHHhcCHHHHHHHHH--HHHHHHHHHHHHhcCCCCCccCccCCCchHHHHHHHHHHHHhcCCCccHHHHHHHHHHHH
Confidence            777777 66666666555  667777776542110       0001122677788888888887766554433210    


Q ss_pred             --------CC-----hHHHHHhhc-CCCHHHHHHHHHHHHHhhcCChhhHHHHH----------hcCCH----HHHHHhh
Q 015851          207 --------GG-----IPPLVELLE-FTDTKVQRAAAGALRTLAFKNDENKNQIV----------ECNAL----PTLILML  258 (399)
Q Consensus       207 --------~~-----i~~L~~ll~-~~~~~v~~~a~~~L~~L~~~~~~~~~~~~----------~~~~~----~~L~~ll  258 (399)
                              ++     .+.+...+. .++..+|..|..+|+......+.+.+.+.          +..++    ..++.+|
T Consensus       280 atntdsskN~GnAILYE~V~TI~~I~~~~~LrvlainiLgkFL~n~d~NirYvaLn~L~r~V~~d~~avqrHr~tIleCL  359 (866)
T KOG1062|consen  280 ATNTDSSKNAGNAILYECVRTIMDIRSNSGLRVLAINILGKFLLNRDNNIRYVALNMLLRVVQQDPTAVQRHRSTILECL  359 (866)
T ss_pred             HhcccccccchhHHHHHHHHHHHhccCCchHHHHHHHHHHHHhcCCccceeeeehhhHHhhhcCCcHHHHHHHHHHHHHh
Confidence                    00     011111111 23466777777777776664333332211          01111    2477888


Q ss_pred             cCCCHHHHHHHHHHHHHhhcCChhHHHHHHHCCCcHHHHHhhcCCChHHHHHHHHHHHHhhcc-ChhhHHHH--------
Q 015851          259 RSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAAT-DSDCKVHI--------  329 (399)
Q Consensus       259 ~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~-~~~~~~~l--------  329 (399)
                      +++|..+++.|+..+..|..  ..+...     +++.|+.+|...+++.+...+.-+..+++. .|+.+.++        
T Consensus       360 ~DpD~SIkrralELs~~lvn--~~Nv~~-----mv~eLl~fL~~~d~~~k~~~as~I~~laEkfaP~k~W~idtml~Vl~  432 (866)
T KOG1062|consen  360 KDPDVSIKRRALELSYALVN--ESNVRV-----MVKELLEFLESSDEDFKADIASKIAELAEKFAPDKRWHIDTMLKVLK  432 (866)
T ss_pred             cCCcHHHHHHHHHHHHHHhc--cccHHH-----HHHHHHHHHHhccHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHH
Confidence            89999999999999988873  333333     477888888888888888877777777654 23333221        


Q ss_pred             -----HhcCCHHHHHHhhCCC-------------------------CHHHHHHHHHHHHHhh-------------ccCCC
Q 015851          330 -----VQRGAVRPLIEMLQSP-------------------------DVQLREMSAFALGRLA-------------QVITV  366 (399)
Q Consensus       330 -----~~~g~v~~L~~ll~~~-------------------------~~~v~~~a~~~L~~l~-------------~~~~~  366 (399)
                           +....+..++.++.+.                         .+.+.+.|.|+|+...             +-++.
T Consensus       433 ~aG~~V~~dv~~nll~LIa~~~~e~~~y~~~rLy~a~~~~~~~~is~e~l~qVa~W~IGEYGdlll~~~~~~~p~~vtes  512 (866)
T KOG1062|consen  433 TAGDFVNDDVVNNLLRLIANAFQELHEYAVLRLYLALSEDTLLDISQEPLLQVASWCIGEYGDLLLDGANEEEPIKVTES  512 (866)
T ss_pred             hcccccchhhHHHHHHHHhcCCcchhhHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHhhhhhHHhhcCccccCCCcCCHH
Confidence                 1223444455544322                         3345667888888766             12222


Q ss_pred             CcchhHHHHHhhccccHHHHHHHHhhhHhhh
Q 015851          367 SVLPAILIFIIINECQLEVLAFVLSEMVLLF  397 (399)
Q Consensus       367 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  397 (399)
                      .++..+...+...+.......+.+.++..++
T Consensus       513 divd~l~~v~~~~~s~~~tk~yal~Al~KLS  543 (866)
T KOG1062|consen  513 DIVDKLEKVLMSHSSDSTTKGYALTALLKLS  543 (866)
T ss_pred             HHHHHHHHHHHhccchHHHHHHHHHHHHHHH
Confidence            3555555555555556667777777766654

>PTZ00429 beta-adaptin; Provisional

Probab=98.55  E-value=8.7e-05  Score=74.26  Aligned_cols=250  Identities=14%  Similarity=0.070  Sum_probs=161.5

Q ss_pred             hhhHHHHHHHHHHHHHHcC-ChhHHHHHHhCCChHHHHhcccCCCCcccccCCCcchHHHHHHHHHHHHHhcCChhhHHH
Q 015851           74 EADRAAAKRATHVLAELAK-NEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQL  152 (399)
Q Consensus        74 ~~~~~~~~~a~~~L~~l~~-~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~  152 (399)
                      +.|.+.+.-..-.+.+++. +++..-.     .++.|.+=+.++++            .+|..|+++|+++-. ++..+.
T Consensus        79 S~d~elKKLvYLYL~~ya~~~pelalL-----aINtl~KDl~d~Np------------~IRaLALRtLs~Ir~-~~i~e~  140 (746)
T PTZ00429         79 STDLELKKLVYLYVLSTARLQPEKALL-----AVNTFLQDTTNSSP------------VVRALAVRTMMCIRV-SSVLEY  140 (746)
T ss_pred             CCCHHHHHHHHHHHHHHcccChHHHHH-----HHHHHHHHcCCCCH------------HHHHHHHHHHHcCCc-HHHHHH
Confidence            4456666666666666666 3543211     25566665665554            788888888888763 222221


Q ss_pred             HHhcCcHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHH
Q 015851          153 IVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALR  232 (399)
Q Consensus       153 i~~~~~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~  232 (399)
                           .++.+.+.+.+.+.        -++..|+.++..+...++.   .+...+.++.|.++|.+.++.+...|+.+|.
T Consensus       141 -----l~~~lkk~L~D~~p--------YVRKtAalai~Kly~~~pe---lv~~~~~~~~L~~LL~D~dp~Vv~nAl~aL~  204 (746)
T PTZ00429        141 -----TLEPLRRAVADPDP--------YVRKTAAMGLGKLFHDDMQ---LFYQQDFKKDLVELLNDNNPVVASNAAAIVC  204 (746)
T ss_pred             -----HHHHHHHHhcCCCH--------HHHHHHHHHHHHHHhhCcc---cccccchHHHHHHHhcCCCccHHHHHHHHHH
Confidence                 34555666665554        8999999999999876664   3445678899999999999999999999999


Q ss_pred             HhhcCChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHHCCCcHHHHHhhcCCChHHHHHHH
Q 015851          233 TLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAA  312 (399)
Q Consensus       233 ~L~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~  312 (399)
                      .+....+...  -...+.+..|+..+..-++=.+...+.+|....   +......  ..++..+...|++.++.|..+|+
T Consensus       205 eI~~~~~~~l--~l~~~~~~~Ll~~L~e~~EW~Qi~IL~lL~~y~---P~~~~e~--~~il~~l~~~Lq~~N~AVVl~Ai  277 (746)
T PTZ00429        205 EVNDYGSEKI--ESSNEWVNRLVYHLPECNEWGQLYILELLAAQR---PSDKESA--ETLLTRVLPRMSHQNPAVVMGAI  277 (746)
T ss_pred             HHHHhCchhh--HHHHHHHHHHHHHhhcCChHHHHHHHHHHHhcC---CCCcHHH--HHHHHHHHHHhcCCCHHHHHHHH
Confidence            9986444321  122344666777776666666666666664432   2211111  24678888889999999999999


Q ss_pred             HHHHHhhccC-hhhHHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhccCCC
Q 015851          313 LLLGQFAATD-SDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQVITV  366 (399)
Q Consensus       313 ~~L~~l~~~~-~~~~~~l~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~  366 (399)
                      .++.++.... ++....+.. .+.++++.++ +++++++-.+...|..+....+.
T Consensus       278 k~il~l~~~~~~~~~~~~~~-rl~~pLv~L~-ss~~eiqyvaLr~I~~i~~~~P~  330 (746)
T PTZ00429        278 KVVANLASRCSQELIERCTV-RVNTALLTLS-RRDAETQYIVCKNIHALLVIFPN  330 (746)
T ss_pred             HHHHHhcCcCCHHHHHHHHH-HHHHHHHHhh-CCCccHHHHHHHHHHHHHHHCHH
Confidence            9999887432 222222221 1234555554 45777888888777777765553

>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []

Probab=98.53  E-value=9.7e-06  Score=76.94  Aligned_cols=276  Identities=18%  Similarity=0.181  Sum_probs=179.5

Q ss_pred             HHHHHHHHcCChhHHHHHHhCCChHHHHhcccCCCCcccccCCCcchHHHHHHHHHHHHHhc-CChhhHHHHHhcCcHHH
Q 015851           83 ATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA-VKPEHQQLIVDNGALSH  161 (399)
Q Consensus        83 a~~~L~~l~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~~~~~a~~~L~~l~-~~~~~~~~i~~~~~i~~  161 (399)
                      |+.+|.-+++++.+.+.+....++..|+.+-.-...  ........++++...|++||+|+. .++..|+.+.+.|+.+.
T Consensus         1 ~L~~LRiLsRd~~~~~~l~~~~~l~~L~~~a~l~~~--~~~~~~~~~~~v~~EALKCL~N~lf~s~~aR~~~~~~~~~~~   78 (446)
T PF10165_consen    1 CLETLRILSRDPTGLDPLFTEEGLSTLLKHAGLSES--DEDEFESPDPDVSREALKCLCNALFLSPSARQIFVDLGLAEK   78 (446)
T ss_pred             CHHHHHHHccCcccchhhccHHHHHHHHHhcCCccc--ccccccCCChHHHHHHHHHHHHHHhCCHHHHHHHHHcCcHHH
Confidence            466777888888888888877778877776521110  000011224589999999999999 89999999999999999


Q ss_pred             HHHHHhccccCccccccHHHHHHHHHHHHHHhhcCchhHHHHHh-cCChHHHHHhhcC-----------------CCHHH
Q 015851          162 LVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRM-EGGIPPLVELLEF-----------------TDTKV  223 (399)
Q Consensus       162 L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~-~~~i~~L~~ll~~-----------------~~~~v  223 (399)
                      ++..|+...+.....   ++....++.|.-++......+..+.. .+++..++..+..                 .+...
T Consensus        79 l~~~Lk~~~~~~~~~---d~~Fl~~RLLFLlTa~~~~~~~~L~~e~~~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~  155 (446)
T PF10165_consen   79 LCERLKNYSDSSQPS---DVEFLDSRLLFLLTALRPDDRKKLIEEHHGVELLTEALERHLKVKSKSSQEPTAPSPMDEEA  155 (446)
T ss_pred             HHHHHHcccccCCCh---hHHHHHHHHHHHHhcCChhHHHHHHHHhhhHHHHHHHHHHHHhcccccccccCCCCcchHHH
Confidence            999999874321111   77777888888888666666655544 4777777765521                 13456


Q ss_pred             HHHHHHHHHHhhcCChhhHHHHHhcCCHHHHHHhhc-------C--CCHHHHHHHHHHHHHhhcCChhHHHHH-------
Q 015851          224 QRAAAGALRTLAFKNDENKNQIVECNALPTLILMLR-------S--EDSAIHYEAVGVIGNLVHSSPNIKKEV-------  287 (399)
Q Consensus       224 ~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~L~~ll~-------~--~~~~v~~~a~~~L~~l~~~~~~~~~~~-------  287 (399)
                      ...+++.+.|+..+.+.... -...+.++.++.++.       .  +......+++.+|.|+-..   ....+       
T Consensus       156 l~EiLKllFNit~~~~~~~~-~~~~~~~~~l~~il~~~l~~~~~~~~l~~~~~~~in~L~nlpl~---~~~~l~~~~~~~  231 (446)
T PF10165_consen  156 LSEILKLLFNITLHYPKSVP-EEFSPSIPHLVSILRRLLPPPPSSPPLDPPHSHAINALLNLPLE---CLDSLLSPKFQQ  231 (446)
T ss_pred             HHHHHHHHHHhhhccCcccc-hhhhHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHhCCChH---HHhhhhcccCCc
Confidence            78889999999986554433 011223343333322       1  2346788888888888321   11111       


Q ss_pred             -------HHCCCcHHHHHhhcC-----CCh---HHHHHHHHHHHHhhccChhhHHHHHh----------------cCCHH
Q 015851          288 -------LAAGALQPVIGLLSS-----CCS---ESQREAALLLGQFAATDSDCKVHIVQ----------------RGAVR  336 (399)
Q Consensus       288 -------~~~~~l~~L~~lL~~-----~~~---~v~~~a~~~L~~l~~~~~~~~~~l~~----------------~g~v~  336 (399)
                             .....+..|+.+|..     ...   +...-.+.+|.+++..+...++.+..                ..+-.
T Consensus       232 ~~~~~~~~~~~~v~~Ll~~Ld~~l~~~~~~~l~~~l~PlL~lL~~~~~~~~~~Rk~lr~~lLP~~~Dr~~~~e~~~tL~~  311 (446)
T PF10165_consen  232 SSLFPEGDNMDVVERLLDFLDKRLDKYEALKLDELLTPLLTLLTRLARAAREVRKYLRARLLPPDKDRKKPPEKGDTLRS  311 (446)
T ss_pred             ccccCCCCChHHHHHHHHHHHHHHHhcCcccchhhHhhHHHHHHHHHHhcHHHHHHHHHHhCCChhhcccCCCCCcchHH
Confidence                   112246666666642     111   23333556777777665555555432                24557


Q ss_pred             HHHHhhCCCCHHHHHHHHHHHHHhhccCCCC
Q 015851          337 PLIEMLQSPDVQLREMSAFALGRLAQVITVS  367 (399)
Q Consensus       337 ~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~  367 (399)
                      .|++++.+..+.++..+...|..||..+.++
T Consensus       312 rLlrLmt~~~~~~k~~vaellf~Lc~~d~~~  342 (446)
T PF10165_consen  312 RLLRLMTSPDPQLKDAVAELLFVLCKEDASR  342 (446)
T ss_pred             HHHHHhCCCCchHHHHHHHHHHHHHhhhHHH
Confidence            8999999988999999999999999877764

It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.

>COG5369 Uncharacterized conserved protein [Function unknown]

Probab=98.51  E-value=9.5e-07  Score=81.35  Aligned_cols=260  Identities=13%  Similarity=0.125  Sum_probs=186.1

Q ss_pred             HHHHHHHHHcCC-hhHHHHHHhCCChHHHHhcccCCCCcccccCCCcchHHHHHHHHHHHHHhc-CChhhHHHHHhcCcH
Q 015851           82 RATHVLAELAKN-EEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA-VKPEHQQLIVDNGAL  159 (399)
Q Consensus        82 ~a~~~L~~l~~~-~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~~~~~a~~~L~~l~-~~~~~~~~i~~~~~i  159 (399)
                      .++.+|..++++ .-.|.-+.+..+.+.|+++|++++.            .+.--+...+.|+. .....+..+.+.|++
T Consensus       408 a~~l~LkS~SrSV~~LRTgL~d~~I~elLi~~Ls~Pei------------mi~~~~t~~icn~vv~fsnL~~~fL~~~iI  475 (743)
T COG5369         408 AIVLFLKSMSRSVTFLRTGLLDYPIVELLIDALSNPEI------------MIEFPDTIDICNKVVPFSNLGAGFLEKSII  475 (743)
T ss_pred             HHHHHHHHhhHHHHHHHhhccccchHHHHHHHhcCccc------------eeeccchhhhhheeeeccchHHHHHHhhHH
Confidence            445566667766 5677788899999999999999766            33335677778877 777889999999999


Q ss_pred             HHHHHHHhccccCccccccHHHHHHHHHHHHHHhhcCch-hHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhhcCC
Q 015851          160 SHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSS-IKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKN  238 (399)
Q Consensus       160 ~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~-~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~  238 (399)
                      ..++.++.+.++        .++....|++.++...+.. .+-.+....++..++++..++...++...++.|.|++...
T Consensus       476 dvl~~~v~sKDd--------aLqans~wvlrHlmyncq~~ekf~~Lakig~~kvl~~~NDpc~~vq~q~lQilrNftc~~  547 (743)
T COG5369         476 DVLVNLVMSKDD--------ALQANSEWVLRHLMYNCQKNEKFKFLAKIGVEKVLSYTNDPCFKVQHQVLQILRNFTCDT  547 (743)
T ss_pred             HHHHHHhhcchh--------hhhhcchhhhhhhhhcCcchhhhhhHHhcCHHHHHHHhcCcccccHHHHHHHHHhccccc
Confidence            999999997755        8999999999999975543 3445677889999999999999999999999999999732


Q ss_pred             hh---hHHHHHhc----CCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHHC-CCcHHHHHhhcC--------
Q 015851          239 DE---NKNQIVEC----NALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAA-GALQPVIGLLSS--------  302 (399)
Q Consensus       239 ~~---~~~~~~~~----~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~-~~l~~L~~lL~~--------  302 (399)
                      ..   .+..+.+.    -....|+..+...+|-.....+..|.+++..++..++.+++. ..+..+..+|..        
T Consensus       548 ~knEkskdv~~K~~p~~ylfk~l~~k~e~~np~~i~~~~yilv~~aa~d~~l~~~V~~q~~~L~~i~eil~e~a~r~~L~  627 (743)
T COG5369         548 SKNEKSKDVFIKATPRRYLFKRLIDKYEENNPMEILEGCYILVRNAACDDTLDYIVQSQEDMLDSIFEILDEFAGRTPLS  627 (743)
T ss_pred             ccccccceeEEecChHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHhccchHHHHHHhHHHHHHHHHHHHHHHcccCCCC
Confidence            22   23323222    135567777777777666677999999888766665555432 233333333210        


Q ss_pred             ---------------------------------------------CChHHHHHHHHHHHHhhccC---h------hhHHH
Q 015851          303 ---------------------------------------------CCSESQREAALLLGQFAATD---S------DCKVH  328 (399)
Q Consensus       303 ---------------------------------------------~~~~v~~~a~~~L~~l~~~~---~------~~~~~  328 (399)
                                                                   ++.+...+..|.+.|+....   +      +-.+.
T Consensus       628 pg~~~~~v~~p~s~~~v~l~e~~d~f~r~~~~~p~~D~~~~d~~~~NdE~~~agiw~~in~~w~~~~~~vtratveR~~i  707 (743)
T COG5369         628 PGSKEEHVLLPISYTIVNLSENSDKFKRLVLTTPHLDNMKKDSTTRNDELSIAGIWIIINLSWKEDGSEVTRATVERIQI  707 (743)
T ss_pred             CCCCcccccCccceeeecccccccccccceecCCCccccccccCCCchhhhhccceEEEecccCccCCccchhhHHHHHH
Confidence                                                         01234555667776765321   1      23345


Q ss_pred             HHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhh
Q 015851          329 IVQRGAVRPLIEMLQSPDVQLREMSAFALGRLA  361 (399)
Q Consensus       329 l~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~  361 (399)
                      +.+.|+-+.+.++..+.++.||+.+..+|.++-
T Consensus       708 L~~~G~~e~l~k~q~~~Sl~vrek~~taL~~l~  740 (743)
T COG5369         708 LCANGIREWLVKIQAKDSLIVREKIGTALENLR  740 (743)
T ss_pred             HHHccHHHHHHHHhccCcHHHHHHHHHHHHhhh
Confidence            667788888888888888999999999998763

>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]

Probab=98.47  E-value=9.2e-06  Score=77.78  Aligned_cols=316  Identities=16%  Similarity=0.100  Sum_probs=173.9

Q ss_pred             hccccCCCCCchHHHhHhhhhhhHHHHhhhhhcchhhhHHHHHHHHHHHHHHcCChhHHHHHHhCCChHHHHhcccCCCC
Q 015851           39 ISSSSAGTSSSDARQALLSEVSAQVNVLNTTFSWLEADRAAAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPT  118 (399)
Q Consensus        39 ~~~~~~l~~~~d~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~l~~L~~lL~~~~~  118 (399)
                      +.+...+++..|+..+.. +..+++-++.+-.  ++.|.+.+.-.+.++..++.....-.......++|.++........
T Consensus       615 LkAigyliplmd~eya~y-yTrevmlil~rEf--~sPDeemkkivLKVv~qcc~t~Gv~~~y~r~dilp~ff~~fw~rrm  691 (1172)
T KOG0213|consen  615 LKAIGYLIPLMDAEYASY-YTREVMLILIREF--GSPDEEMKKIVLKVVKQCCATDGVEPAYIRFDILPEFFFSFWGRRM  691 (1172)
T ss_pred             HHHHhhccccccHHHHHH-hHHHHHHHHHHhh--CCChHHHHHHHHHHHHHHhcccCCCHHHHhhhhhHHHHhhhhhhhh
Confidence            334445678888877644 4445555554444  5567777888888888888754444445556666666654433211


Q ss_pred             cccccCCCcchHHH---------HHHHHHHHHHhc-CChhhHHHHHhcCcHHHHHHHHhccccCccccccHHHHHHHHHH
Q 015851          119 SEADRNLKPFEHEV---------EKGSAFALGLLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADA  188 (399)
Q Consensus       119 ~~~~~~~~~~~~~~---------~~~a~~~L~~l~-~~~~~~~~i~~~~~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~  188 (399)
                      ...-...++.-...         .....+.+..+- ..+.+|...+  +.+..++..+...+-+.      .+-+.....
T Consensus       692 A~drr~ykqlv~ttv~ia~KvG~~~~v~R~v~~lkde~e~yrkm~~--etv~ri~~~lg~~dide------rleE~lidg  763 (1172)
T KOG0213|consen  692 ALDRRNYKQLVDTTVEIAAKVGSDPIVSRVVLDLKDEPEQYRKMVA--ETVSRIVGRLGAADIDE------RLEERLIDG  763 (1172)
T ss_pred             hccccchhhHHHHHHHHHHHhCchHHHHHHhhhhccccHHHHHHHH--HHHHHHHhccccccccH------HHHHHHHHH
Confidence            10000000000000         001112222222 2222333222  23444444443322211      111222222


Q ss_pred             HHHHhhcCc-h----------------hHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhhHHHHHhcCCH
Q 015851          189 ITNLAHENS-S----------------IKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNAL  251 (399)
Q Consensus       189 L~~l~~~~~-~----------------~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~  251 (399)
                      +.+-.++.. .                .+.+-.-...+..+++.|.+.++.+|..|+..++.|+. --..+.+.-..|-+
T Consensus       764 il~Afqeqtt~d~vml~gfg~V~~~lg~r~kpylpqi~stiL~rLnnksa~vRqqaadlis~la~-Vlktc~ee~~m~~l  842 (1172)
T KOG0213|consen  764 ILYAFQEQTTEDSVMLLGFGTVVNALGGRVKPYLPQICSTILWRLNNKSAKVRQQAADLISSLAK-VLKTCGEEKLMGHL  842 (1172)
T ss_pred             HHHHHHhcccchhhhhhhHHHHHHHHhhccccchHHHHHHHHHHhcCCChhHHHHHHHHHHHHHH-HHHhccHHHHHHHh
Confidence            222111110 0                00001112345667788999999999999999998885 22333222111112


Q ss_pred             -HHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHHCCCcHHHHHhhcCCChHHHHHHHHHHHHhhccChhhHHHHH
Q 015851          252 -PTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIV  330 (399)
Q Consensus       252 -~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~  330 (399)
                       -+|...|..+.+++.-..++++..|...-.-.+-.-=..+++|.|..+|++....+++++...++.++..+++....--
T Consensus       843 GvvLyEylgeeypEvLgsILgAikaI~nvigm~km~pPi~dllPrltPILknrheKVqen~IdLvg~IadrgpE~v~aRE  922 (1172)
T KOG0213|consen  843 GVVLYEYLGEEYPEVLGSILGAIKAIVNVIGMTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGTIADRGPEYVSARE  922 (1172)
T ss_pred             hHHHHHhcCcccHHHHHHHHHHHHHHHHhccccccCCChhhhcccchHhhhhhHHHHHHHHHHHHHHHHhcCcccCCHHH
Confidence             2466788888999998888888887632211111111257899999999999999999999999999977665321111


Q ss_pred             hcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhccCCC
Q 015851          331 QRGAVRPLIEMLQSPDVQLREMSAFALGRLAQVITV  366 (399)
Q Consensus       331 ~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~  366 (399)
                      -..+.=-|+.+|++.+.++|++|...++-+++.-.+
T Consensus       923 WMRIcfeLlelLkahkK~iRRaa~nTfG~IakaIGP  958 (1172)
T KOG0213|consen  923 WMRICFELLELLKAHKKEIRRAAVNTFGYIAKAIGP  958 (1172)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhcCH
Confidence            122334577888888899999999999999987664

>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]

Probab=98.42  E-value=3.3e-05  Score=67.01  Aligned_cols=229  Identities=17%  Similarity=0.144  Sum_probs=158.1

Q ss_pred             hhhhHHHHHHHHHHHHHHcCChhHHHHHHhC-CChHHHHhcccCCCCcccccCCCcchHHHHHHHHHHHHHhcCChhhHH
Q 015851           73 LEADRAAAKRATHVLAELAKNEEVVNWIVEG-GAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQ  151 (399)
Q Consensus        73 ~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~-g~l~~L~~lL~~~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~  151 (399)
                      +.-++.+|..|+.++.++..+++.|...... .+-..+++++++.-.          ..++|.+.+-+++.++.++.+.+
T Consensus       159 Q~i~~lTrlfav~cl~~l~~~~e~R~i~waentcs~r~~e~l~n~vg----------~~qlQY~SL~~iw~lTf~~~~aq  228 (432)
T COG5231         159 QLIDFLTRLFAVSCLSNLEFDVEKRKIEWAENTCSRRFMEILQNYVG----------VKQLQYNSLIIIWILTFSKECAQ  228 (432)
T ss_pred             HHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHhhHHHHHHHHHHhhhh----------hhhhHHHHHHHHHHHhcCHHHHH
Confidence            4456778999999999999999999966644 456677787776433          12789999999999999988885


Q ss_pred             HHHh-cCcHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhhcCc--hhHHHHHhcCChHHHHHhhcC---CCHHHHH
Q 015851          152 LIVD-NGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENS--SIKTRVRMEGGIPPLVELLEF---TDTKVQR  225 (399)
Q Consensus       152 ~i~~-~~~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~--~~~~~~~~~~~i~~L~~ll~~---~~~~v~~  225 (399)
                      .+-. -..+..++++++....+       .+.+.++.++.|++...+  .+..... .+-+...++.|..   .+++++.
T Consensus       229 di~K~~dli~dli~iVk~~~ke-------KV~Rlc~~Iv~n~~dK~pK~~I~~~ll-l~~~~k~vq~L~erkysDEel~~  300 (432)
T COG5231         229 DIDKMDDLINDLIAIVKERAKE-------KVLRLCCGIVANVLDKSPKGYIFSPLL-LNDISKCVQVLLERKYSDEELVI  300 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHhcccccchhhhhHh-hcchHHHHHHHHhcCCChHHHHH
Confidence            5443 23677778888766554       788999999999996332  2222222 3334444555433   3344433


Q ss_pred             HHHHHHHH-------hhc--------------CCh---------hhHHHHHh--cCCHHHHHHhhcCCCHH-HHHHHHHH
Q 015851          226 AAAGALRT-------LAF--------------KND---------ENKNQIVE--CNALPTLILMLRSEDSA-IHYEAVGV  272 (399)
Q Consensus       226 ~a~~~L~~-------L~~--------------~~~---------~~~~~~~~--~~~~~~L~~ll~~~~~~-v~~~a~~~  272 (399)
                      ..-..=..       ++.              ..|         .+...+.+  ..++..|.++++.+++. ....||.-
T Consensus       301 di~~i~s~l~~~~k~l~~fD~Y~~ELdsg~l~wSp~H~~~dFWs~N~d~l~kdny~i~k~L~~~lq~n~~nt~i~vAc~D  380 (432)
T COG5231         301 DIERIRSRLVQNTKKLCIFDNYLNELDSGRLEWSPYHHKKDFWSTNLDMLIKDNYEIVKVLKKYLQSNNPNTWICVACSD  380 (432)
T ss_pred             HHHHHHHHHHhhhhhhhHHHHHHHHHhhCcccCCCcccccCchhhhHHHHhhhhHHHHHHHHHHHhcCCCCceEeeeHhh
Confidence            22111111       110              011         23334443  34567788888877665 55668888


Q ss_pred             HHHhhcCChhHHHHHHHCCCcHHHHHhhcCCChHHHHHHHHHHHHhh
Q 015851          273 IGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFA  319 (399)
Q Consensus       273 L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~  319 (399)
                      +..+.+..|+....+...|+=..++.++++++++++-+|..++..+.
T Consensus       381 i~~~Vr~~PE~~~vl~Kyg~k~~im~L~nh~d~~VkfeAl~a~q~~i  427 (432)
T COG5231         381 IFQLVRASPEINAVLSKYGVKEIIMNLINHDDDDVKFEALQALQTCI  427 (432)
T ss_pred             HHHHHHhCchHHHHHHHhhhHHHHHHHhcCCCchhhHHHHHHHHHHH
Confidence            88888888999899999999999999999999999999999988765

>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]

Probab=98.41  E-value=7.8e-06  Score=74.36  Aligned_cols=161  Identities=22%  Similarity=0.325  Sum_probs=137.3

Q ss_pred             HHHhcCChHHHHHhhcCCCH--HHHHHHHHHHHHhhcCChhhHHHHHhcCCHHHHHHhhcC-CCHHHHHHHHHHHHHhhc
Q 015851          202 RVRMEGGIPPLVELLEFTDT--KVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRS-EDSAIHYEAVGVIGNLVH  278 (399)
Q Consensus       202 ~~~~~~~i~~L~~ll~~~~~--~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~L~~ll~~-~~~~v~~~a~~~L~~l~~  278 (399)
                      .+...|++..|+.++..++.  .++..+.+.|-.+..  .++.+.+...| +..++.+.+. +.++.....+++|.++..
T Consensus       175 ~iR~~~~lD~Llrmf~aPn~et~vRve~~rlLEq~~~--aeN~d~va~~~-~~~Il~lAK~~e~~e~aR~~~~il~~mFK  251 (832)
T KOG3678|consen  175 AIRLDGGLDLLLRMFQAPNLETSVRVEAARLLEQILV--AENRDRVARIG-LGVILNLAKEREPVELARSVAGILEHMFK  251 (832)
T ss_pred             HhhccchHHHHHHHHhCCchhHHHHHHHHHHHHHHHh--hhhhhHHhhcc-chhhhhhhhhcCcHHHHHHHHHHHHHHhh
Confidence            46667999999999999884  569999999999985  67788887765 4555555443 467899999999999999


Q ss_pred             CChhHHHHHHHCCCcHHHHHhhcCCChHHHHHHHHHHHHhhccC-hhhHHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHH
Q 015851          279 SSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATD-SDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFAL  357 (399)
Q Consensus       279 ~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~-~~~~~~l~~~g~v~~L~~ll~~~~~~v~~~a~~~L  357 (399)
                      ++++..+.++..|+++.++-+.+..++.+..+++.+|+|++-+. ...++.+++..+-+.|..+-.+.|.-+|..|+-++
T Consensus       252 HSeet~~~Lvaa~~lD~vl~~~rRt~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF~LA~skDel~R~~AClAV  331 (832)
T KOG3678|consen  252 HSEETCQRLVAAGGLDAVLYWCRRTDPALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLFPLAFSKDELLRLHACLAV  331 (832)
T ss_pred             hhHHHHHHHHhhcccchheeecccCCHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhhhhhcchHHHHHHHHHHHH
Confidence            88888999999999999999999999999999999999998763 47788899988999999999888999999999999


Q ss_pred             HHhhccCC
Q 015851          358 GRLAQVIT  365 (399)
Q Consensus       358 ~~l~~~~~  365 (399)
                      ..|+.+..
T Consensus       332 ~vlat~KE  339 (832)
T KOG3678|consen  332 AVLATNKE  339 (832)
T ss_pred             hhhhhhhh
Confidence            99987654

>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]

Probab=98.37  E-value=5e-05  Score=70.87  Aligned_cols=284  Identities=10%  Similarity=0.038  Sum_probs=173.7

Q ss_pred             hhhhhHHHHhhhhhcchhhhHHHHHHHHHHHHHHcCC--hhHHHHHHhCCChHHHHhcccCCCCcccccCCCcchHHHHH
Q 015851           57 SEVSAQVNVLNTTFSWLEADRAAAKRATHVLAELAKN--EEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEK  134 (399)
Q Consensus        57 ~~~~~~~~~L~~~l~~~~~~~~~~~~a~~~L~~l~~~--~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~~~~  134 (399)
                      ..+|+++..+..... .++....+.+++.++++++..  |+..... ...++-.++..-.+..+          +..+|.
T Consensus       129 ~~wp~lm~~mv~nvg-~eqp~~~k~~sl~~~gy~ces~~Pe~li~~-sN~il~aiv~ga~k~et----------~~avRL  196 (858)
T COG5215         129 SLWPGLMEEMVRNVG-DEQPVSGKCESLGICGYHCESEAPEDLIQM-SNVILFAIVMGALKNET----------TSAVRL  196 (858)
T ss_pred             ccchHHHHHHHHhcc-ccCchHhHHHHHHHHHHHhhccCHHHHHHH-hhHHHHHHHHhhcccCc----------hHHHHH
Confidence            356777777666543 234456788999999999985  5332222 12334444443333332          127888


Q ss_pred             HHHHHHHHhcCChhhHHHHHhcC----cHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhhcCchhHHHHHhcCChH
Q 015851          135 GSAFALGLLAVKPEHQQLIVDNG----ALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIP  210 (399)
Q Consensus       135 ~a~~~L~~l~~~~~~~~~i~~~~----~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~  210 (399)
                      .++.+|.+-+.  ..+..+...+    +++..++.-+..+.        +++..+..+|..+..-.-..-....+.-...
T Consensus       197 aaL~aL~dsl~--fv~~nf~~E~erNy~mqvvceatq~~d~--------e~q~aafgCl~kim~LyY~fm~~ymE~aL~a  266 (858)
T COG5215         197 AALKALMDSLM--FVQGNFCYEEERNYFMQVVCEATQGNDE--------ELQHAAFGCLNKIMMLYYKFMQSYMENALAA  266 (858)
T ss_pred             HHHHHHHHHHH--HHHHhhcchhhhchhheeeehhccCCcH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            89999888331  1122222222    23333333343333        8999999998888754433333233333445


Q ss_pred             HHHHhhcCCCHHHHHHHHHHHHHhhcCChhhHHHH----------------HhcCCHHHHHHhhcC-------CCHHHHH
Q 015851          211 PLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQI----------------VECNALPTLILMLRS-------EDSAIHY  267 (399)
Q Consensus       211 ~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~----------------~~~~~~~~L~~ll~~-------~~~~v~~  267 (399)
                      .....+++.+.++...+......++...-+..-..                .-..++|.|+++|..       ++-.+..
T Consensus       267 lt~~~mks~nd~va~qavEfWsticeEeid~~~e~~~~pe~p~qn~~fa~aav~dvlP~lL~LL~~q~ed~~~DdWn~sm  346 (858)
T COG5215         267 LTGRFMKSQNDEVAIQAVEFWSTICEEEIDGEMEDKYLPEVPAQNHGFARAAVADVLPELLSLLEKQGEDYYGDDWNPSM  346 (858)
T ss_pred             HHHHHhcCcchHHHHHHHHHHHHHHHHHhhhHHHHhhcccCchhhcchHHHHHHHHHHHHHHHHHhcCCCccccccchhh
Confidence            55677899999999999988878885211111111                112368899999964       1235677


Q ss_pred             HHHHHHHHhhcCChhHHHHHHHCCCcHHHHHhhcCCChHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHhhCCCCH
Q 015851          268 EAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDV  347 (399)
Q Consensus       268 ~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~v~~L~~ll~~~~~  347 (399)
                      .|..+|.-.+....   ..+.+ .++..+-.-+++++..-++.|+.+++.+..+..+....-+-..++|.+..++.++.-
T Consensus       347 aA~sCLqlfaq~~g---d~i~~-pVl~FvEqni~~~~w~nreaavmAfGSvm~gp~~~~lT~~V~qalp~i~n~m~D~~l  422 (858)
T COG5215         347 AASSCLQLFAQLKG---DKIMR-PVLGFVEQNIRSESWANREAAVMAFGSVMHGPCEDCLTKIVPQALPGIENEMSDSCL  422 (858)
T ss_pred             hHHHHHHHHHHHhh---hHhHH-HHHHHHHHhccCchhhhHHHHHHHhhhhhcCccHHHHHhhHHhhhHHHHHhccccee
Confidence            77777776653221   12221 133444445678888999999999999986533333333334578999999988888


Q ss_pred             HHHHHHHHHHHHhhccCCC
Q 015851          348 QLREMSAFALGRLAQVITV  366 (399)
Q Consensus       348 ~v~~~a~~~L~~l~~~~~~  366 (399)
                      -+...++|+++.++.+-+.
T Consensus       423 ~vk~ttAwc~g~iad~va~  441 (858)
T COG5215         423 WVKSTTAWCFGAIADHVAM  441 (858)
T ss_pred             ehhhHHHHHHHHHHHHHHH
Confidence            8999999999999976553

>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]

Probab=98.34  E-value=0.00012  Score=63.67  Aligned_cols=226  Identities=12%  Similarity=0.099  Sum_probs=153.4

Q ss_pred             HHHHHHHHHHHHHhcCChhhHHHHHhcC-cHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhhcCchhHHHHHh-cC
Q 015851          130 HEVEKGSAFALGLLAVKPEHQQLIVDNG-ALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRM-EG  207 (399)
Q Consensus       130 ~~~~~~a~~~L~~l~~~~~~~~~i~~~~-~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~-~~  207 (399)
                      +-++.-|+.++.++...++.|..+-..+ +-..++..++..-...      +++...+.+++-++. ++.+.+.+-. ..
T Consensus       163 ~lTrlfav~cl~~l~~~~e~R~i~waentcs~r~~e~l~n~vg~~------qlQY~SL~~iw~lTf-~~~~aqdi~K~~d  235 (432)
T COG5231         163 FLTRLFAVSCLSNLEFDVEKRKIEWAENTCSRRFMEILQNYVGVK------QLQYNSLIIIWILTF-SKECAQDIDKMDD  235 (432)
T ss_pred             HHHHHHHHHHHhhhhhhHHHHHHHHHHhhHHHHHHHHHHhhhhhh------hhHHHHHHHHHHHhc-CHHHHHHHHHHHH
Confidence            4678899999999999999998765443 5566777777654422      899999999999994 4444432322 25


Q ss_pred             ChHHHHHhhcCCC-HHHHHHHHHHHHHhhcCCh-hhHHHHHhcCCHHHHHHhhcC---CCHHHHHHHHHHHHHhhcC---
Q 015851          208 GIPPLVELLEFTD-TKVQRAAAGALRTLAFKND-ENKNQIVECNALPTLILMLRS---EDSAIHYEAVGVIGNLVHS---  279 (399)
Q Consensus       208 ~i~~L~~ll~~~~-~~v~~~a~~~L~~L~~~~~-~~~~~~~~~~~~~~L~~ll~~---~~~~v~~~a~~~L~~l~~~---  279 (399)
                      .+..++.+.+... +.+.+.+++.+.|++...+ .....+.-.|-+..-++.|..   .|++++...-.+=..+...   
T Consensus       236 li~dli~iVk~~~keKV~Rlc~~Iv~n~~dK~pK~~I~~~lll~~~~k~vq~L~erkysDEel~~di~~i~s~l~~~~k~  315 (432)
T COG5231         236 LINDLIAIVKERAKEKVLRLCCGIVANVLDKSPKGYIFSPLLLNDISKCVQVLLERKYSDEELVIDIERIRSRLVQNTKK  315 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhHhhcchHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhhhh
Confidence            5667777776654 7889999999999997332 333333333433444444432   3555554333322222111   


Q ss_pred             ------------------Ch---------hHHHHHHHC--CCcHHHHHhhcCCChH-HHHHHHHHHHHhhccChhhHHHH
Q 015851          280 ------------------SP---------NIKKEVLAA--GALQPVIGLLSSCCSE-SQREAALLLGQFAATDSDCKVHI  329 (399)
Q Consensus       280 ------------------~~---------~~~~~~~~~--~~l~~L~~lL~~~~~~-v~~~a~~~L~~l~~~~~~~~~~l  329 (399)
                                        +|         .+...+...  .++..|.++++...+. ...-||.-|..+....|+.+..+
T Consensus       316 l~~fD~Y~~ELdsg~l~wSp~H~~~dFWs~N~d~l~kdny~i~k~L~~~lq~n~~nt~i~vAc~Di~~~Vr~~PE~~~vl  395 (432)
T COG5231         316 LCIFDNYLNELDSGRLEWSPYHHKKDFWSTNLDMLIKDNYEIVKVLKKYLQSNNPNTWICVACSDIFQLVRASPEINAVL  395 (432)
T ss_pred             hhHHHHHHHHHhhCcccCCCcccccCchhhhHHHHhhhhHHHHHHHHHHHhcCCCCceEeeeHhhHHHHHHhCchHHHHH
Confidence                              01         112222222  3678888888876665 45557888888888889999999


Q ss_pred             HhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhc
Q 015851          330 VQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQ  362 (399)
Q Consensus       330 ~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~  362 (399)
                      ...|+-..+.+++.+++++|+-.|..++..+..
T Consensus       396 ~Kyg~k~~im~L~nh~d~~VkfeAl~a~q~~i~  428 (432)
T COG5231         396 SKYGVKEIIMNLINHDDDDVKFEALQALQTCIS  428 (432)
T ss_pred             HHhhhHHHHHHHhcCCCchhhHHHHHHHHHHHh
Confidence            999999999999999999999999999987653

>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.34  E-value=0.00014  Score=69.81  Aligned_cols=66  Identities=14%  Similarity=0.170  Sum_probs=52.5

Q ss_pred             ChHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhc
Q 015851          208 GIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVH  278 (399)
Q Consensus       208 ~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~  278 (399)
                      .+..|-.++.+.|+.++.-++-+++.+...++......     -..++++|.+.|+.+|..|+..|.-+..
T Consensus       300 CvqKLr~fiedsDqNLKYlgLlam~KI~ktHp~~Vqa~-----kdlIlrcL~DkD~SIRlrALdLl~gmVs  365 (877)
T KOG1059|consen  300 CVQKLRIFIEDSDQNLKYLGLLAMSKILKTHPKAVQAH-----KDLILRCLDDKDESIRLRALDLLYGMVS  365 (877)
T ss_pred             HHHHHhhhhhcCCccHHHHHHHHHHHHhhhCHHHHHHh-----HHHHHHHhccCCchhHHHHHHHHHHHhh
Confidence            35566677788899999999999999997666543322     4568899999999999999999988873

>TIGR02270 conserved hypothetical protein

Probab=98.33  E-value=0.00032  Score=65.56  Aligned_cols=187  Identities=22%  Similarity=0.151  Sum_probs=129.8

Q ss_pred             hHHHHhcccCCCCcccccCCCcchHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHHHhccccCccccccHHHHHHH
Q 015851          106 VPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRA  185 (399)
Q Consensus       106 l~~L~~lL~~~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~~~i~~L~~~L~~~~~~~~~~~~~~~~~~a  185 (399)
                      +..|+..|.+.+.            .++..+..+|+.+-.          ....+.|+.+|++.+.        .++..+
T Consensus        88 ~~~L~~~L~d~~~------------~vr~aaa~ALg~i~~----------~~a~~~L~~~L~~~~p--------~vR~aa  137 (410)
T TIGR02270        88 LRSVLAVLQAGPE------------GLCAGIQAALGWLGG----------RQAEPWLEPLLAASEP--------PGRAIG  137 (410)
T ss_pred             HHHHHHHhcCCCH------------HHHHHHHHHHhcCCc----------hHHHHHHHHHhcCCCh--------HHHHHH
Confidence            7888899987765            688899999987652          3367888888876655        677666


Q ss_pred             HHHHHHHhhcCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhhHHHHHhcCCHHHHHHhhcCCCHHH
Q 015851          186 ADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAI  265 (399)
Q Consensus       186 ~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v  265 (399)
                      +.++....            ....+.+..+|++.++.++..|+++|+.+-..           ..++.|...+.+.++.|
T Consensus       138 l~al~~r~------------~~~~~~L~~~L~d~d~~Vra~A~raLG~l~~~-----------~a~~~L~~al~d~~~~V  194 (410)
T TIGR02270       138 LAALGAHR------------HDPGPALEAALTHEDALVRAAALRALGELPRR-----------LSESTLRLYLRDSDPEV  194 (410)
T ss_pred             HHHHHhhc------------cChHHHHHHHhcCCCHHHHHHHHHHHHhhccc-----------cchHHHHHHHcCCCHHH
Confidence            66555521            22345788889999999999999999988752           35677888899999999


Q ss_pred             HHHHHHHHHHhhcCChhHHHHHHH----C------------------CCcHHHHHhhcCCChHHHHHHHHHHHHhhccCh
Q 015851          266 HYEAVGVIGNLVHSSPNIKKEVLA----A------------------GALQPVIGLLSSCCSESQREAALLLGQFAATDS  323 (399)
Q Consensus       266 ~~~a~~~L~~l~~~~~~~~~~~~~----~------------------~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~  323 (399)
                      |..|++++..+-.  +.....+..    .                  ..++.|..+++.+  .++..++++++.+-  + 
T Consensus       195 R~aA~~al~~lG~--~~A~~~l~~~~~~~g~~~~~~l~~~lal~~~~~a~~~L~~ll~d~--~vr~~a~~AlG~lg--~-  267 (410)
T TIGR02270       195 RFAALEAGLLAGS--RLAWGVCRRFQVLEGGPHRQRLLVLLAVAGGPDAQAWLRELLQAA--ATRREALRAVGLVG--D-  267 (410)
T ss_pred             HHHHHHHHHHcCC--HhHHHHHHHHHhccCccHHHHHHHHHHhCCchhHHHHHHHHhcCh--hhHHHHHHHHHHcC--C-
Confidence            9999999977732  222111111    1                  2333444444433  36677777777653  2 


Q ss_pred             hhHHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhc
Q 015851          324 DCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQ  362 (399)
Q Consensus       324 ~~~~~l~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~  362 (399)
                              ...++.|+..+.+  +.++..|..++..|+=
T Consensus       268 --------p~av~~L~~~l~d--~~~aR~A~eA~~~ItG  296 (410)
T TIGR02270       268 --------VEAAPWCLEAMRE--PPWARLAGEAFSLITG  296 (410)
T ss_pred             --------cchHHHHHHHhcC--cHHHHHHHHHHHHhhC
Confidence                    2357888888864  3489999999998874

Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.

>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless

Probab=98.32  E-value=1.5e-06  Score=52.64  Aligned_cols=41  Identities=41%  Similarity=0.741  Sum_probs=38.3

Q ss_pred             ChhhHHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhc
Q 015851          322 DSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQ  362 (399)
Q Consensus       322 ~~~~~~~l~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~  362 (399)
                      ++++++.+.+.|++|.|+++++++++++++.|+|+|+||+.
T Consensus         1 ~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~~   41 (41)
T PF00514_consen    1 SPENKQAIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNLAA   41 (41)
T ss_dssp             SHHHHHHHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence            36788999999999999999999999999999999999974

Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....

>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless

Probab=98.31  E-value=1.4e-06  Score=52.74  Aligned_cols=40  Identities=40%  Similarity=0.643  Sum_probs=37.7

Q ss_pred             ChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhh
Q 015851          238 NDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLV  277 (399)
Q Consensus       238 ~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~  277 (399)
                      +++++..+++.|++|.|+.+|.+++++++..|+|+|+||+
T Consensus         1 ~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~   40 (41)
T PF00514_consen    1 SPENKQAIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNLA   40 (41)
T ss_dssp             SHHHHHHHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence            3678899999999999999999999999999999999997

Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....

>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term

Probab=98.28  E-value=0.00017  Score=66.49  Aligned_cols=222  Identities=18%  Similarity=0.209  Sum_probs=161.2

Q ss_pred             HHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhhcCchhHHHHHhcCChH
Q 015851          131 EVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIP  210 (399)
Q Consensus       131 ~~~~~a~~~L~~l~~~~~~~~~i~~~~~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~  210 (399)
                      ++|..+.+++..+..+++.-+.+.+.+.--.++.-|..+....      .-+++|+..+..+.......+.  ...+++.
T Consensus        40 ~vraa~yRilRy~i~d~~~l~~~~~l~id~~ii~SL~~~~~~~------~ER~QALkliR~~l~~~~~~~~--~~~~vvr  111 (371)
T PF14664_consen   40 EVRAAGYRILRYLISDEESLQILLKLHIDIFIIRSLDRDNKND------VEREQALKLIRAFLEIKKGPKE--IPRGVVR  111 (371)
T ss_pred             HHHHHHHHHHHHHHcCHHHHHHHHHcCCchhhHhhhcccCCCh------HHHHHHHHHHHHHHHhcCCccc--CCHHHHH
Confidence            8999999999999988888888888887777777777665432      5667899988888854332222  3457788


Q ss_pred             HHHHhhcCCCHHHHHHHHHHHHHhhcCChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHHC
Q 015851          211 PLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAA  290 (399)
Q Consensus       211 ~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~  290 (399)
                      .++.+..+.+...+..++.+|..++..+|+   .+...|++..|+..+.++..++....+.++-.+.. .+..++.+...
T Consensus       112 alvaiae~~~D~lr~~cletL~El~l~~P~---lv~~~gG~~~L~~~l~d~~~~~~~~l~~~lL~lLd-~p~tR~yl~~~  187 (371)
T PF14664_consen  112 ALVAIAEHEDDRLRRICLETLCELALLNPE---LVAECGGIRVLLRALIDGSFSISESLLDTLLYLLD-SPRTRKYLRPG  187 (371)
T ss_pred             HHHHHHhCCchHHHHHHHHHHHHHHhhCHH---HHHHcCCHHHHHHHHHhccHhHHHHHHHHHHHHhC-CcchhhhhcCC
Confidence            999999999999999999999999985554   67789999999999887766788888899988874 46666655543


Q ss_pred             CCcHHHHHhhcCC-------Ch--HHHHHHHHHHHHhhccChhhHHHHHh--cCCHHHHHHhhCCCCHHHHHHHHHHHHH
Q 015851          291 GALQPVIGLLSSC-------CS--ESQREAALLLGQFAATDSDCKVHIVQ--RGAVRPLIEMLQSPDVQLREMSAFALGR  359 (399)
Q Consensus       291 ~~l~~L~~lL~~~-------~~--~v~~~a~~~L~~l~~~~~~~~~~l~~--~g~v~~L~~ll~~~~~~v~~~a~~~L~~  359 (399)
                      --++.++.-+.+.       +.  +.-..+..++..+... -.+.-.+..  ..++..|+..+..+++++|+.....+..
T Consensus       188 ~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~Lrs-W~GLl~l~~~~~~~lksLv~~L~~p~~~ir~~Ildll~d  266 (371)
T PF14664_consen  188 FDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRS-WPGLLYLSMNDFRGLKSLVDSLRLPNPEIRKAILDLLFD  266 (371)
T ss_pred             ccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhc-CCceeeeecCCchHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence            3455555444322       22  2334455566666543 333333332  2578889999999999999999999998


Q ss_pred             hhccCC
Q 015851          360 LAQVIT  365 (399)
Q Consensus       360 l~~~~~  365 (399)
                      +-.-.+
T Consensus       267 llrik~  272 (371)
T PF14664_consen  267 LLRIKP  272 (371)
T ss_pred             HHCCCC
Confidence            875444

>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]

Probab=98.28  E-value=2.4e-05  Score=67.82  Aligned_cols=183  Identities=17%  Similarity=0.142  Sum_probs=119.2

Q ss_pred             cHHHHHHHHHHHHHHhhcC--chhHHHHHh--cCChHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhhHHHHHhcCCHHH
Q 015851          178 VNSVIRRAADAITNLAHEN--SSIKTRVRM--EGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPT  253 (399)
Q Consensus       178 ~~~~~~~a~~~L~~l~~~~--~~~~~~~~~--~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~  253 (399)
                      +|+.+..++..|..+...+  ......+..  ...+..+...+.+....+...|+.++..++...........+ .++|.
T Consensus        20 ~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~~~-~~l~~   98 (228)
T PF12348_consen   20 DWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFEPYAD-ILLPP   98 (228)
T ss_dssp             SHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGHHHHH-HHHHH
T ss_pred             CHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHH-HHHHH
Confidence            3588888999999988765  111122221  145567777788878889999999999999754444444444 37899


Q ss_pred             HHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHHCCCcHHHHHhhcCCChHHHHHHHHHHHHhhccCh---hh-HHHH
Q 015851          254 LILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDS---DC-KVHI  329 (399)
Q Consensus       254 L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~---~~-~~~l  329 (399)
                      |++.+.++..-++..|..+|..++...+.. ..+    .++.+...+.+.++.+|..++..+..+....+   .. ....
T Consensus        99 Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~~-~~~----~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l~~~~  173 (228)
T PF12348_consen   99 LLKKLGDSKKFIREAANNALDAIIESCSYS-PKI----LLEILSQGLKSKNPQVREECAEWLAIILEKWGSDSSVLQKSA  173 (228)
T ss_dssp             HHHGGG---HHHHHHHHHHHHHHHTTS-H---HH----HHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GGG--HH
T ss_pred             HHHHHccccHHHHHHHHHHHHHHHHHCCcH-HHH----HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhhhcccc
Confidence            999999999999999999999998654411 122    15667777889999999999999998876544   11 1111


Q ss_pred             HhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhccCCC
Q 015851          330 VQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQVITV  366 (399)
Q Consensus       330 ~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~  366 (399)
                      .-..+++.+..++.+++++||..|..++..+.+..++
T Consensus       174 ~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~~~  210 (228)
T PF12348_consen  174 FLKQLVKALVKLLSDADPEVREAARECLWALYSHFPE  210 (228)
T ss_dssp             HHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH-H
T ss_pred             hHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCH
Confidence            1244678899999999999999999999999887765

The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.

>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term

Probab=98.26  E-value=0.00011  Score=67.85  Aligned_cols=221  Identities=15%  Similarity=0.131  Sum_probs=158.3

Q ss_pred             hHHHHHHHHHHHHHHcCChhHHHHHHhCCChHHHHhcccCCCCcccccCCCcchHHHHHHHHHHHHHhcCChhhHHHHHh
Q 015851           76 DRAAAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIVD  155 (399)
Q Consensus        76 ~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~  155 (399)
                      +.++|..+.++++.+..+++....+.+.++--.++.-|..+....          .=|++|.+.+..+..-+..... ..
T Consensus        38 ~~~vraa~yRilRy~i~d~~~l~~~~~l~id~~ii~SL~~~~~~~----------~ER~QALkliR~~l~~~~~~~~-~~  106 (371)
T PF14664_consen   38 SKEVRAAGYRILRYLISDEESLQILLKLHIDIFIIRSLDRDNKND----------VEREQALKLIRAFLEIKKGPKE-IP  106 (371)
T ss_pred             cHHHHHHHHHHHHHHHcCHHHHHHHHHcCCchhhHhhhcccCCCh----------HHHHHHHHHHHHHHHhcCCccc-CC
Confidence            388999999999999999999999998887767777776654431          2367899888888733322222 24


Q ss_pred             cCcHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhh
Q 015851          156 NGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLA  235 (399)
Q Consensus       156 ~~~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~  235 (399)
                      .|.+..++.+....++        .++..++.+|..++..+|.   .+...||+..+++.+.++..++....+.++..+.
T Consensus       107 ~~vvralvaiae~~~D--------~lr~~cletL~El~l~~P~---lv~~~gG~~~L~~~l~d~~~~~~~~l~~~lL~lL  175 (371)
T PF14664_consen  107 RGVVRALVAIAEHEDD--------RLRRICLETLCELALLNPE---LVAECGGIRVLLRALIDGSFSISESLLDTLLYLL  175 (371)
T ss_pred             HHHHHHHHHHHhCCch--------HHHHHHHHHHHHHHhhCHH---HHHHcCCHHHHHHHHHhccHhHHHHHHHHHHHHh
Confidence            5678888888888666        8999999999999988885   5778899999999998877778889999999999


Q ss_pred             cCChhhHHHHHhcCCHHHHHHhhcCC-------CH--HHHHHHHHHHHHhhcCChhHHHHHHHC-CCcHHHHHhhcCCCh
Q 015851          236 FKNDENKNQIVECNALPTLILMLRSE-------DS--AIHYEAVGVIGNLVHSSPNIKKEVLAA-GALQPVIGLLSSCCS  305 (399)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~L~~ll~~~-------~~--~v~~~a~~~L~~l~~~~~~~~~~~~~~-~~l~~L~~lL~~~~~  305 (399)
                      . .|..+..+...--++.++.-+.+.       +.  +....+..++..+-.+-+......... .++..|+..|..+++
T Consensus       176 d-~p~tR~yl~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl~l~~~~~~~lksLv~~L~~p~~  254 (371)
T PF14664_consen  176 D-SPRTRKYLRPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGLLYLSMNDFRGLKSLVDSLRLPNP  254 (371)
T ss_pred             C-CcchhhhhcCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCceeeeecCCchHHHHHHHHHcCCCH
Confidence            7 576666665544466665554432       22  344555666666554433332222222 478888888888888


Q ss_pred             HHHHHHHHHHHHhh
Q 015851          306 ESQREAALLLGQFA  319 (399)
Q Consensus       306 ~v~~~a~~~L~~l~  319 (399)
                      +++......+..+.
T Consensus       255 ~ir~~Ildll~dll  268 (371)
T PF14664_consen  255 EIRKAILDLLFDLL  268 (371)
T ss_pred             HHHHHHHHHHHHHH
Confidence            88887777776665

>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]

Probab=98.22  E-value=0.00023  Score=70.36  Aligned_cols=275  Identities=23%  Similarity=0.223  Sum_probs=149.8

Q ss_pred             hcchhhhHHHHHHHHHHHHHHcCChhHHHHHHhCCChHHHHhcccCCCCcccccCCCcchHHHHHHHHHHHHHhcCChhh
Q 015851           70 FSWLEADRAAAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEH  149 (399)
Q Consensus        70 l~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~  149 (399)
                      +...+.|.++++.|..+++.+..+..-....--...++.|++-|.++              .+|..|.+++..++..+-.
T Consensus       577 L~a~d~DqeVkeraIscmgq~i~~fgD~l~~eL~~~L~il~eRl~nE--------------iTRl~AvkAlt~Ia~S~l~  642 (1233)
T KOG1824|consen  577 LKATDSDQEVKERAISCMGQIIANFGDFLGNELPRTLPILLERLGNE--------------ITRLTAVKALTLIAMSPLD  642 (1233)
T ss_pred             HhcccccHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhch--------------hHHHHHHHHHHHHHhccce
Confidence            33477899999999999999877533222222234667777777643              5678899999999855422


Q ss_pred             HHH-HHhcCcHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHH
Q 015851          150 QQL-IVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAA  228 (399)
Q Consensus       150 ~~~-i~~~~~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~  228 (399)
                      -.. -.-..+++.+..++.+...        .++...+.++..|.......-..-....++..+..++...+-.+-..|.
T Consensus       643 i~l~~~l~~il~~l~~flrK~~r--------~lr~~~l~a~~~L~~~~~~~~~~~~~e~vL~el~~Lisesdlhvt~~a~  714 (1233)
T KOG1824|consen  643 IDLSPVLTEILPELASFLRKNQR--------ALRLATLTALDKLVKNYSDSIPAELLEAVLVELPPLISESDLHVTQLAV  714 (1233)
T ss_pred             eehhhhHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHhccccHHHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence            211 1112367777888777655        5555566666555532211101011112233344445555566666677


Q ss_pred             HHHHHhhcCChhhHHHHHhcCCHHHHHHhhcCCCH------------------------------------------HHH
Q 015851          229 GALRTLAFKNDENKNQIVECNALPTLILMLRSEDS------------------------------------------AIH  266 (399)
Q Consensus       229 ~~L~~L~~~~~~~~~~~~~~~~~~~L~~ll~~~~~------------------------------------------~v~  266 (399)
                      .+|..+....+.. -.-....+++.++.+++++--                                          .+.
T Consensus       715 ~~L~tl~~~~ps~-l~~~~~~iL~~ii~ll~Spllqg~al~~~l~~f~alV~t~~~~l~y~~l~s~lt~PV~~~~~~~l~  793 (1233)
T KOG1824|consen  715 AFLTTLAIIQPSS-LLKISNPILDEIIRLLRSPLLQGGALSALLLFFQALVITKEPDLDYISLLSLLTAPVYEQVTDGLH  793 (1233)
T ss_pred             HHHHHHHhcccHH-HHHHhhhhHHHHHHHhhCccccchHHHHHHHHHHHHHhcCCCCccHHHHHHHHcCCcccccccchh
Confidence            7776666533322 222233345555555544210                                          112


Q ss_pred             HHHHHHHHH----hhcCChhHHHHHHHCCCcHHHHHhhcC--CChHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHH
Q 015851          267 YEAVGVIGN----LVHSSPNIKKEVLAAGALQPVIGLLSS--CCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIE  340 (399)
Q Consensus       267 ~~a~~~L~~----l~~~~~~~~~~~~~~~~l~~L~~lL~~--~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~v~~L~~  340 (399)
                      ..|...++.    ++...++.     .......++.-+.+  .+..++.-|...++.+-.+.+    .....++...+++
T Consensus       794 kqa~~siA~cvA~Lt~~~~~~-----s~s~a~kl~~~~~s~~s~~~ikvfa~LslGElgr~~~----~s~~~e~~~~iie  864 (1233)
T KOG1824|consen  794 KQAYYSIAKCVAALTCACPQK-----SKSLATKLIQDLQSPKSSDSIKVFALLSLGELGRRKD----LSPQNELKDTIIE  864 (1233)
T ss_pred             HHHHHHHHHHHHHHHHhcccc-----chhHHHHHHHHHhCCCCchhHHHHHHhhhhhhccCCC----CCcchhhHHHHHH
Confidence            222222221    11111100     01123333333332  233566666666666643311    1223445568889


Q ss_pred             hhCCCCHHHHHHHHHHHHHhhccCCCCcchhHHHHH
Q 015851          341 MLQSPDVQLREMSAFALGRLAQVITVSVLPAILIFI  376 (399)
Q Consensus       341 ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~  376 (399)
                      .+++++.+++.+|..||++++...-+.++|.++...
T Consensus       865 af~sp~edvksAAs~ALGsl~vgnl~~yLpfil~qi  900 (1233)
T KOG1824|consen  865 AFNSPSEDVKSAASYALGSLAVGNLPKYLPFILEQI  900 (1233)
T ss_pred             HcCCChHHHHHHHHHHhhhhhcCchHhHHHHHHHHH
Confidence            999999999999999999999977777788765443

>KOG0212 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.20  E-value=0.00011  Score=68.43  Aligned_cols=274  Identities=15%  Similarity=0.134  Sum_probs=174.9

Q ss_pred             hhhhhHHHHhhhhhcchhhhHHHHHHHHHHHHHHcCChhHHHHHHhCCChHHHHhcccCCCCcccccCCCcchHHHHHHH
Q 015851           57 SEVSAQVNVLNTTFSWLEADRAAAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGS  136 (399)
Q Consensus        57 ~~~~~~~~~L~~~l~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~~~~~a  136 (399)
                      -..+.++|.|.+-+.  ..++..|..-+.-|..+-.-|...-.-.-..+++-|..+|.++..            ++|..+
T Consensus       163 FsL~~~ipLL~eriy--~~n~~tR~flv~Wl~~Lds~P~~~m~~yl~~~ldGLf~~LsD~s~------------eVr~~~  228 (675)
T KOG0212|consen  163 FSLPEFIPLLRERIY--VINPMTRQFLVSWLYVLDSVPDLEMISYLPSLLDGLFNMLSDSSD------------EVRTLT  228 (675)
T ss_pred             cCHHHHHHHHHHHHh--cCCchHHHHHHHHHHHHhcCCcHHHHhcchHHHHHHHHHhcCCcH------------HHHHHH
Confidence            346778888877664  336777777777777665544432211223567788888988776            788777


Q ss_pred             HHHHHHhc----CChhhHHHHHhcCcHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHH
Q 015851          137 AFALGLLA----VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPL  212 (399)
Q Consensus       137 ~~~L~~l~----~~~~~~~~i~~~~~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L  212 (399)
                      -.+|.++-    ..|...+   -...++.++.-+.++++        +++..++.-|..+..-.+. .-...-.|.+..+
T Consensus       229 ~t~l~~fL~eI~s~P~s~d---~~~~i~vlv~~l~ss~~--------~iq~~al~Wi~efV~i~g~-~~l~~~s~il~~i  296 (675)
T KOG0212|consen  229 DTLLSEFLAEIRSSPSSMD---YDDMINVLVPHLQSSEP--------EIQLKALTWIQEFVKIPGR-DLLLYLSGILTAI  296 (675)
T ss_pred             HHHHHHHHHHHhcCccccC---cccchhhccccccCCcH--------HHHHHHHHHHHHHhcCCCc-chhhhhhhhhhhc
Confidence            77776654    3343321   13356667777776665        7888877766666643222 2223445777778


Q ss_pred             HHhhcCCCHH-HHHHH---HHHHHHhhcCChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHH
Q 015851          213 VELLEFTDTK-VQRAA---AGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVL  288 (399)
Q Consensus       213 ~~ll~~~~~~-v~~~a---~~~L~~L~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~  288 (399)
                      +.++.+..+. ++..+   -..+..+.. .+...+.+--..++..+.+.+.++..+.+..++..+..+-...+. .-..-
T Consensus       297 Lpc~s~~e~~~i~~~a~~~n~~l~~l~s-~~~~~~~id~~~ii~vl~~~l~~~~~~tri~~L~Wi~~l~~~~p~-ql~~h  374 (675)
T KOG0212|consen  297 LPCLSDTEEMSIKEYAQMVNGLLLKLVS-SERLKEEIDYGSIIEVLTKYLSDDREETRIAVLNWIILLYHKAPG-QLLVH  374 (675)
T ss_pred             ccCCCCCccccHHHHHHHHHHHHHHHHh-hhhhccccchHHHHHHHHHHhhcchHHHHHHHHHHHHHHHhhCcc-hhhhh
Confidence            8888776653 33332   223444443 233333322234688899999999999999999999888754333 23333


Q ss_pred             HCCCcHHHHHhhcCCChHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHhh---CCCCHHHHHHHHHHHHHhhccCC
Q 015851          289 AAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEML---QSPDVQLREMSAFALGRLAQVIT  365 (399)
Q Consensus       289 ~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~v~~L~~ll---~~~~~~v~~~a~~~L~~l~~~~~  365 (399)
                      ...+.+.|+.-|++++.++...+...+.++|.. +...      +..+.+.+++   .....-+...+..+++.+|---.
T Consensus       375 ~~~if~tLL~tLsd~sd~vvl~~L~lla~i~~s-~~~~------~~~~fl~sLL~~f~e~~~~l~~Rg~lIIRqlC~lL~  447 (675)
T KOG0212|consen  375 NDSIFLTLLKTLSDRSDEVVLLALSLLASICSS-SNSP------NLRKFLLSLLEMFKEDTKLLEVRGNLIIRQLCLLLN  447 (675)
T ss_pred             ccHHHHHHHHhhcCchhHHHHHHHHHHHHHhcC-cccc------cHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHhC
Confidence            467889999999999999999999999999964 3322      2344444444   44445566677778887775444

>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]

Probab=98.20  E-value=0.00053  Score=64.33  Aligned_cols=279  Identities=11%  Similarity=0.033  Sum_probs=173.8

Q ss_pred             chhhhHHHHHHHHHHHHHHcC-ChhHHHHHHhCCChHHHHhcccCCCCcccccCCCcchHHHHHHHHHHHHHhc-CChhh
Q 015851           72 WLEADRAAAKRATHVLAELAK-NEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA-VKPEH  149 (399)
Q Consensus        72 ~~~~~~~~~~~a~~~L~~l~~-~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~~~~~a~~~L~~l~-~~~~~  149 (399)
                      .+.+|.+++..|..||.++.. .-.......+.-......+.+.+++.            ++..+++.....+| ..-+.
T Consensus       230 tq~~d~e~q~aafgCl~kim~LyY~fm~~ymE~aL~alt~~~mks~nd------------~va~qavEfWsticeEeid~  297 (858)
T COG5215         230 TQGNDEELQHAAFGCLNKIMMLYYKFMQSYMENALAALTGRFMKSQND------------EVAIQAVEFWSTICEEEIDG  297 (858)
T ss_pred             ccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcch------------HHHHHHHHHHHHHHHHHhhh
Confidence            356788999999999999887 34444455555556666677777776            77778888777776 21111


Q ss_pred             HHHH----------------HhcCcHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHH
Q 015851          150 QQLI----------------VDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLV  213 (399)
Q Consensus       150 ~~~i----------------~~~~~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~  213 (399)
                      .-.+                .-.+.+|.|+.+|.+..++. ..+.|.+...+..+|.-.++...   ..+... ++..+-
T Consensus       298 ~~e~~~~pe~p~qn~~fa~aav~dvlP~lL~LL~~q~ed~-~~DdWn~smaA~sCLqlfaq~~g---d~i~~p-Vl~FvE  372 (858)
T COG5215         298 EMEDKYLPEVPAQNHGFARAAVADVLPELLSLLEKQGEDY-YGDDWNPSMAASSCLQLFAQLKG---DKIMRP-VLGFVE  372 (858)
T ss_pred             HHHHhhcccCchhhcchHHHHHHHHHHHHHHHHHhcCCCc-cccccchhhhHHHHHHHHHHHhh---hHhHHH-HHHHHH
Confidence            1000                12347899999998743321 22345666666666666664221   122222 444445


Q ss_pred             HhhcCCCHHHHHHHHHHHHHhhcCChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHHCCCc
Q 015851          214 ELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGAL  293 (399)
Q Consensus       214 ~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l  293 (399)
                      .-+.+++..-++.+.-+++.+..+..+.+..-+-+..+|.+...+.++.--++..++|+++.|+.+-+   ..+-..+-+
T Consensus       373 qni~~~~w~nreaavmAfGSvm~gp~~~~lT~~V~qalp~i~n~m~D~~l~vk~ttAwc~g~iad~va---~~i~p~~Hl  449 (858)
T COG5215         373 QNIRSESWANREAAVMAFGSVMHGPCEDCLTKIVPQALPGIENEMSDSCLWVKSTTAWCFGAIADHVA---MIISPCGHL  449 (858)
T ss_pred             HhccCchhhhHHHHHHHhhhhhcCccHHHHHhhHHhhhHHHHHhcccceeehhhHHHHHHHHHHHHHH---HhcCccccc
Confidence            55778889999999999999998644444333445678888888887777899999999999984322   222223444


Q ss_pred             HHHHHhhc---CCChHHHHHHHHHHHHhhccChhhH---HHHHh---cCCHHHHHHhhC--CCCHHHHHHHHHHHHHhhc
Q 015851          294 QPVIGLLS---SCCSESQREAALLLGQFAATDSDCK---VHIVQ---RGAVRPLIEMLQ--SPDVQLREMSAFALGRLAQ  362 (399)
Q Consensus       294 ~~L~~lL~---~~~~~v~~~a~~~L~~l~~~~~~~~---~~l~~---~g~v~~L~~ll~--~~~~~v~~~a~~~L~~l~~  362 (399)
                      +..++...   ...+.+..+++|...|++..-++..   ..+..   ..++..|++...  .++...|..+-.+|+.+..
T Consensus       450 ~~~vsa~liGl~D~p~~~~ncsw~~~nlv~h~a~a~~~~~S~l~~fY~ai~~~Lv~~t~~~~Ne~n~R~s~fsaLgtli~  529 (858)
T COG5215         450 VLEVSASLIGLMDCPFRSINCSWRKENLVDHIAKAVREVESFLAKFYLAILNALVKGTELALNESNLRVSLFSALGTLIL  529 (858)
T ss_pred             cHHHHHHHhhhhccchHHhhhHHHHHhHHHhhhhhhccccchhHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHh
Confidence            43333321   3566888999999999986533222   11111   122333333221  3456677777888888877


Q ss_pred             cCCCCcch
Q 015851          363 VITVSVLP  370 (399)
Q Consensus       363 ~~~~~~~~  370 (399)
                      -.++.+.+
T Consensus       530 ~~~d~V~~  537 (858)
T COG5215         530 ICPDAVSD  537 (858)
T ss_pred             hcchhHHH
Confidence            77765333

>KOG0212 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.17  E-value=6.8e-05  Score=69.89  Aligned_cols=294  Identities=14%  Similarity=0.065  Sum_probs=178.9

Q ss_pred             hhhhHHHHHHHHHHHHHHcCChhHHHHHHhCCChHHHHhcccCCCCcccccCCCcchHHHHHHHHHHHHHhcCC-hhhHH
Q 015851           73 LEADRAAAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVK-PEHQQ  151 (399)
Q Consensus        73 ~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~~-~~~~~  151 (399)
                      .+.|..+|..|++.|.|++.-........-..+...+.++..+++..+++             ++..|-.+-.+ ..-+.
T Consensus        94 ~D~d~~vRyyACEsLYNiaKv~k~~v~~~Fn~iFdvL~klsaDsd~~V~~-------------~aeLLdRLikdIVte~~  160 (675)
T KOG0212|consen   94 SDQDSQVRYYACESLYNIAKVAKGEVLVYFNEIFDVLCKLSADSDQNVRG-------------GAELLDRLIKDIVTESA  160 (675)
T ss_pred             cCccceeeeHhHHHHHHHHHHhccCcccchHHHHHHHHHHhcCCcccccc-------------HHHHHHHHHHHhccccc
Confidence            56677789999999999886433222223334566777777777765543             45555544411 10011


Q ss_pred             -HHHhcCcHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHH
Q 015851          152 -LIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGA  230 (399)
Q Consensus       152 -~i~~~~~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~  230 (399)
                       .+.=.+++|.|-.-+...+.        ..+...+.-|..|- ..|.....-.-...++.|..+|.+++++++..+-.+
T Consensus       161 ~tFsL~~~ipLL~eriy~~n~--------~tR~flv~Wl~~Ld-s~P~~~m~~yl~~~ldGLf~~LsD~s~eVr~~~~t~  231 (675)
T KOG0212|consen  161 STFSLPEFIPLLRERIYVINP--------MTRQFLVSWLYVLD-SVPDLEMISYLPSLLDGLFNMLSDSSDEVRTLTDTL  231 (675)
T ss_pred             cccCHHHHHHHHHHHHhcCCc--------hHHHHHHHHHHHHh-cCCcHHHHhcchHHHHHHHHHhcCCcHHHHHHHHHH
Confidence             12222344444444444433        56666666666665 344444333344677889999999999999888777


Q ss_pred             HHHhhcCChhhHHHH-HhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHHCCCcHHHHHhhcCCChH-HH
Q 015851          231 LRTLAFKNDENKNQI-VECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSE-SQ  308 (399)
Q Consensus       231 L~~L~~~~~~~~~~~-~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~-v~  308 (399)
                      +.+.... -.+.... --...++.++.-+.++++.++..|+..+..+..-.+. .....-+|++..++..+.+..+. ++
T Consensus       232 l~~fL~e-I~s~P~s~d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g~-~~l~~~s~il~~iLpc~s~~e~~~i~  309 (675)
T KOG0212|consen  232 LSEFLAE-IRSSPSSMDYDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIPGR-DLLLYLSGILTAILPCLSDTEEMSIK  309 (675)
T ss_pred             HHHHHHH-HhcCccccCcccchhhccccccCCcHHHHHHHHHHHHHHhcCCCc-chhhhhhhhhhhcccCCCCCccccHH
Confidence            7766641 1111112 2245788999999999999999999999888754332 23445578888888888776653 44


Q ss_pred             HHHHH---HHHHhhccChhhHHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhccCCCCcc----hhHHHHH-hhcc
Q 015851          309 REAAL---LLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQVITVSVL----PAILIFI-IINE  380 (399)
Q Consensus       309 ~~a~~---~L~~l~~~~~~~~~~l~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~----~~~~~~~-~~~~  380 (399)
                      ..+..   -+..++. .+.....+--...+..+.+.+.+...+.+-++..-+..+-...+++.+    +....++ .+.+
T Consensus       310 ~~a~~~n~~l~~l~s-~~~~~~~id~~~ii~vl~~~l~~~~~~tri~~L~Wi~~l~~~~p~ql~~h~~~if~tLL~tLsd  388 (675)
T KOG0212|consen  310 EYAQMVNGLLLKLVS-SERLKEEIDYGSIIEVLTKYLSDDREETRIAVLNWIILLYHKAPGQLLVHNDSIFLTLLKTLSD  388 (675)
T ss_pred             HHHHHHHHHHHHHHh-hhhhccccchHHHHHHHHHHhhcchHHHHHHHHHHHHHHHhhCcchhhhhccHHHHHHHHhhcC
Confidence            44332   2333432 233332333345678889999999999999999888888888877522    1111222 4455


Q ss_pred             ccHHHHHHHHh
Q 015851          381 CQLEVLAFVLS  391 (399)
Q Consensus       381 ~~~~~~~~~l~  391 (399)
                      ..+++....++
T Consensus       389 ~sd~vvl~~L~  399 (675)
T KOG0212|consen  389 RSDEVVLLALS  399 (675)
T ss_pred             chhHHHHHHHH
Confidence            55565555554

>KOG2734 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.17  E-value=0.0025  Score=58.11  Aligned_cols=266  Identities=18%  Similarity=0.155  Sum_probs=188.2

Q ss_pred             HHHHHHHHHHcCChhHHHHHHhCCChHHHHhcccCCCCcccccCCCcchHHHHHHHHHHHHHhcCCh----------hhH
Q 015851           81 KRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKP----------EHQ  150 (399)
Q Consensus        81 ~~a~~~L~~l~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~----------~~~  150 (399)
                      ...+.-+.-++.-|+.-..+++.++++.|+++|.+.+.            ++-...+..|..|++..          ..-
T Consensus       102 hd~IQ~mhvlAt~PdLYp~lveln~V~slL~LLgHeNt------------DI~iavvdLLqELTD~Dv~~es~egAevLi  169 (536)
T KOG2734|consen  102 HDIIQEMHVLATMPDLYPILVELNAVQSLLELLGHENT------------DIAIAVVDLLQELTDEDVLYESEEGAEVLI  169 (536)
T ss_pred             HHHHHHHHhhhcChHHHHHHHHhccHHHHHHHhcCCCc------------hhHHHHHHHHHHhhhhcccccccccHHHHH
Confidence            34566677777779998899999999999999999888            67778888888888321          234


Q ss_pred             HHHHhcCcHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhhcCC--CHHHHHHHH
Q 015851          151 QLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFT--DTKVQRAAA  228 (399)
Q Consensus       151 ~~i~~~~~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~--~~~v~~~a~  228 (399)
                      +.+++.+.++.|++-+.+-+++....  ..=...++..+-|+....+.....+.+.|.+..|+.-+...  -......+.
T Consensus       170 daLvdg~vlaLLvqnveRLdEsvkee--a~gv~~~L~vveNlv~~r~~~~~~~~e~~ll~WLL~rl~~k~~f~aNk~Yas  247 (536)
T KOG2734|consen  170 DALVDGQVLALLVQNVERLDESVKEE--ADGVHNTLAVVENLVEVRPAICTEIVEQGLLSWLLKRLKGKAAFDANKQYAS  247 (536)
T ss_pred             HHHHhccHHHHHHHHHHHhhhcchhh--hhhhHHHHHHHHHHHhccHHHHHHHHHhhHHHHHHHHHhcccCcchhHHHHH
Confidence            56678899999999988765432111  03456788889999988888777788888887777644432  345677888


Q ss_pred             HHHHHhhcCChhhHHHHHhcCCHHHHHHhhc---CC------CHHHHHHHHHHHHHhhcCChhHHHHHHHCCCcHHHHHh
Q 015851          229 GALRTLAFKNDENKNQIVECNALPTLILMLR---SE------DSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGL  299 (399)
Q Consensus       229 ~~L~~L~~~~~~~~~~~~~~~~~~~L~~ll~---~~------~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~l  299 (399)
                      .+|.-+...+.+++.....-.++..+++-+.   ..      ..+...+.-.+|+.+... +.++..+....+++...-+
T Consensus       248 EiLaillq~s~e~~~~~~~l~GiD~lL~~la~yk~~dP~~~~E~EmmeNLFdcLCs~lm~-~~nr~~Fl~~EGlqLm~Lm  326 (536)
T KOG2734|consen  248 EILAILLQNSDENRKLLGPLDGIDVLLRQLAVYKRHDPATVDEEEMMENLFDCLCSLLMA-PANRERFLKGEGLQLMNLM  326 (536)
T ss_pred             HHHHHHhccCchhhhhhcCcccHHHHHhhcchhhccCCCCcCHHHHHHHHHHHHHHHhcC-hhhhhhhhccccHHHHHHH
Confidence            8888888866667777777888888887663   11      236677777777777654 6778889988888877777


Q ss_pred             hcCCChHHHHHHHHHHHHhhccCh--hhHHHHHhcCCHHHHHHhhC-C---------CCHHHHHHHHHHHHHhhc
Q 015851          300 LSSCCSESQREAALLLGQFAATDS--DCKVHIVQRGAVRPLIEMLQ-S---------PDVQLREMSAFALGRLAQ  362 (399)
Q Consensus       300 L~~~~~~v~~~a~~~L~~l~~~~~--~~~~~l~~~g~v~~L~~ll~-~---------~~~~v~~~a~~~L~~l~~  362 (399)
                      ++. ....+-.+..+|.....+++  .++..+++..++..+..+.- .         ...+.-+..+..|+.+-.
T Consensus       327 lr~-Kk~sr~SalkvLd~am~g~~gt~~C~kfVe~lGLrtiF~~FMk~p~k~~~~~~t~~e~eEhv~siiaSl~~  400 (536)
T KOG2734|consen  327 LRE-KKVSRGSALKVLDHAMFGPEGTPNCNKFVEILGLRTIFPLFMKTPLKRKKRKISADEHEEHVCSILASLLR  400 (536)
T ss_pred             HHH-HHHhhhhHHHHHHHHHhCCCchHHHHHHHHHHhHHHHHHHHhhCccchhcccCcHHHHHHHHHHHHHHHHH
Confidence            765 33566778889998887654  56667777666655555432 1         223344555555555544

>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.15  E-value=0.00074  Score=65.80  Aligned_cols=250  Identities=18%  Similarity=0.204  Sum_probs=139.9

Q ss_pred             hhhhHHHHHHHHHHHHHHcCChhHHHHHHhCCChHHHHhcccCCCCcccccCCCcchHHHHHHHHHHHHHhc-CChhhHH
Q 015851           73 LEADRAAAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA-VKPEHQQ  151 (399)
Q Consensus        73 ~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~~~~~a~~~L~~l~-~~~~~~~  151 (399)
                      .+.+..+.--|+-+|++++.-+-.|      ...|-+.++|++.++            -+|..|+.|...+- ..|+..+
T Consensus       117 ~s~nq~vVglAL~alg~i~s~Emar------dlapeVe~Ll~~~~~------------~irKKA~Lca~r~irK~P~l~e  178 (866)
T KOG1062|consen  117 NSSNQYVVGLALCALGNICSPEMAR------DLAPEVERLLQHRDP------------YIRKKAALCAVRFIRKVPDLVE  178 (866)
T ss_pred             cCCCeeehHHHHHHhhccCCHHHhH------HhhHHHHHHHhCCCH------------HHHHHHHHHHHHHHHcCchHHH
Confidence            3455566677777777777533332      235667778887766            78889999998888 7777666


Q ss_pred             HHHhcCcHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhhcC-------------
Q 015851          152 LIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEF-------------  218 (399)
Q Consensus       152 ~i~~~~~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~-------------  218 (399)
                      .     +++...++|.+.+.        .+....+..+..+|..++..-..+..  .++.++..|+.             
T Consensus       179 ~-----f~~~~~~lL~ek~h--------GVL~~~l~l~~e~c~~~~~~l~~fr~--l~~~lV~iLk~l~~~~yspeydv~  243 (866)
T KOG1062|consen  179 H-----FVIAFRKLLCEKHH--------GVLIAGLHLITELCKISPDALSYFRD--LVPSLVKILKQLTNSGYSPEYDVH  243 (866)
T ss_pred             H-----hhHHHHHHHhhcCC--------ceeeeHHHHHHHHHhcCHHHHHHHHH--HHHHHHHHHHHHhcCCCCCccCcc
Confidence            5     44566677766665        55666777777777665544333332  44445544421             


Q ss_pred             --CCHHHHHHHHHHHHHhhcCChhhHHHHHhc-------------CC----HHHHHHhhc-CCCHHHHHHHHHHHHHhhc
Q 015851          219 --TDTKVQRAAAGALRTLAFKNDENKNQIVEC-------------NA----LPTLILMLR-SEDSAIHYEAVGVIGNLVH  278 (399)
Q Consensus       219 --~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~-------------~~----~~~L~~ll~-~~~~~v~~~a~~~L~~l~~  278 (399)
                        ++|-++...++.|+-|-.++++..+.|.+-             -+    .+.+..++. .++..+|..|+.+|+.+..
T Consensus       244 gi~dPFLQi~iLrlLriLGq~d~daSd~M~DiLaqvatntdsskN~GnAILYE~V~TI~~I~~~~~LrvlainiLgkFL~  323 (866)
T KOG1062|consen  244 GISDPFLQIRILRLLRILGQNDADASDLMNDILAQVATNTDSSKNAGNAILYECVRTIMDIRSNSGLRVLAINILGKFLL  323 (866)
T ss_pred             CCCchHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHhccCCchHHHHHHHHHHHHhc
Confidence              357788888888888887655554444331             00    011111111 2345666666666666654


Q ss_pred             CChhHHHHHH----------HCCCc----HHHHHhhcCCChHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHhhCC
Q 015851          279 SSPNIKKEVL----------AAGAL----QPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQS  344 (399)
Q Consensus       279 ~~~~~~~~~~----------~~~~l----~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~v~~L~~ll~~  344 (399)
                      +.+.+...+.          +..++    ..+++.|++++..+++.|...+..++  +..+.+.+     +..|+.+|.+
T Consensus       324 n~d~NirYvaLn~L~r~V~~d~~avqrHr~tIleCL~DpD~SIkrralELs~~lv--n~~Nv~~m-----v~eLl~fL~~  396 (866)
T KOG1062|consen  324 NRDNNIRYVALNMLLRVVQQDPTAVQRHRSTILECLKDPDVSIKRRALELSYALV--NESNVRVM-----VKELLEFLES  396 (866)
T ss_pred             CCccceeeeehhhHHhhhcCCcHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHh--ccccHHHH-----HHHHHHHHHh
Confidence            4444332221          01111    13445555555556666665555554  23333332     3345566655


Q ss_pred             CCHHHHHHHHHHHHHhhc
Q 015851          345 PDVQLREMSAFALGRLAQ  362 (399)
Q Consensus       345 ~~~~v~~~a~~~L~~l~~  362 (399)
                      .+++.+...+.-+..+++
T Consensus       397 ~d~~~k~~~as~I~~laE  414 (866)
T KOG1062|consen  397 SDEDFKADIASKIAELAE  414 (866)
T ss_pred             ccHHHHHHHHHHHHHHHH
Confidence            566666666666665554

>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]

Probab=98.13  E-value=0.001  Score=58.23  Aligned_cols=292  Identities=16%  Similarity=0.107  Sum_probs=168.7

Q ss_pred             HHHhHhhhhhhHHHHhhhhhcchhhhHHHHHHHHHHHHHHcCChhHHHHHHhCCChHHHHh--cccCCCCcccccCCCcc
Q 015851           51 ARQALLSEVSAQVNVLNTTFSWLEADRAAAKRATHVLAELAKNEEVVNWIVEGGAVPALVK--HLQAPPTSEADRNLKPF  128 (399)
Q Consensus        51 ~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~l~~L~~--lL~~~~~~~~~~~~~~~  128 (399)
                      ..........++++.+...+  ..+|.++...|...+..++..+.....++.+.....+-.  +-...++          
T Consensus       118 VseillvvNaeilklildcI--ggeddeVAkAAiesikrialfpaaleaiFeSellDdlhlrnlaakcnd----------  185 (524)
T KOG4413|consen  118 VSEILLVVNAEILKLILDCI--GGEDDEVAKAAIESIKRIALFPAALEAIFESELLDDLHLRNLAAKCND----------  185 (524)
T ss_pred             HHHHHHHhhhhHHHHHHHHH--cCCcHHHHHHHHHHHHHHHhcHHHHHHhcccccCChHHHhHHHhhhhh----------
Confidence            33344455667777777766  455667888999999999999888888887776655422  2222222          


Q ss_pred             hHHHHHHHHHHHHHhc-CChhhHHHHHhcCcHHHHHHHHhccccCccccc---------------cHHHHHHHHHHHHHH
Q 015851          129 EHEVEKGSAFALGLLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRA---------------VNSVIRRAADAITNL  192 (399)
Q Consensus       129 ~~~~~~~a~~~L~~l~-~~~~~~~~i~~~~~i~~L~~~L~~~~~~~~~~~---------------~~~~~~~a~~~L~~l  192 (399)
                        -+|......+..+. .+|+.....-.+|.+..|..-++...+.-...+               .+--++-....+.|+
T Consensus       186 --iaRvRVleLIieifSiSpesaneckkSGLldlLeaElkGteDtLVianciElvteLaeteHgreflaQeglIdlicnI  263 (524)
T KOG4413|consen  186 --IARVRVLELIIEIFSISPESANECKKSGLLDLLEAELKGTEDTLVIANCIELVTELAETEHGREFLAQEGLIDLICNI  263 (524)
T ss_pred             --HHHHHHHHHHHHHHhcCHHHHhHhhhhhHHHHHHHHhcCCcceeehhhHHHHHHHHHHHhhhhhhcchhhHHHHHHHH
Confidence              45666667777776 778877777788888877777765433210000               001122233444444


Q ss_pred             hhcC---ch--hHHHH------Hhc---------------CChHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhhHHHHH
Q 015851          193 AHEN---SS--IKTRV------RME---------------GGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIV  246 (399)
Q Consensus       193 ~~~~---~~--~~~~~------~~~---------------~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~  246 (399)
                      ..+.   |.  .+...      ...               .++....++...+++..+..|..+++.+-+ +.++.+.+.
T Consensus       264 IsGadsdPfekfralmgfgkffgkeaimdvseeaicealiiaidgsfEmiEmnDpdaieaAiDalGilGS-nteGadlll  342 (524)
T KOG4413|consen  264 ISGADSDPFEKFRALMGFGKFFGKEAIMDVSEEAICEALIIAIDGSFEMIEMNDPDAIEAAIDALGILGS-NTEGADLLL  342 (524)
T ss_pred             hhCCCCCcHHHHHHHHHHHHHhcchHHhhcCHHHHHHHHHHHHHhhHHhhhcCCchHHHHHHHHHHhccC-CcchhHHHh
Confidence            4321   11  10000      000               011222334456688889999999999987 678888777


Q ss_pred             hcCC--HHH-HHHhhcCCCHHHHHHHHHHHHHhhcC---ChhH----------HHHHHHC-------CCcHHHHHhhcCC
Q 015851          247 ECNA--LPT-LILMLRSEDSAIHYEAVGVIGNLVHS---SPNI----------KKEVLAA-------GALQPVIGLLSSC  303 (399)
Q Consensus       247 ~~~~--~~~-L~~ll~~~~~~v~~~a~~~L~~l~~~---~~~~----------~~~~~~~-------~~l~~L~~lL~~~  303 (399)
                      +.|.  ... +.+....+...-+..++.+|.+++..   .++.          +..+.++       .-+..+..+++.+
T Consensus       343 kTgppaaehllarafdqnahakqeaaihaLaaIagelrlkpeqitDgkaeerlrclifdaaaqstkldPleLFlgilqQp  422 (524)
T KOG4413|consen  343 KTGPPAAEHLLARAFDQNAHAKQEAAIHALAAIAGELRLKPEQITDGKAEERLRCLIFDAAAQSTKLDPLELFLGILQQP  422 (524)
T ss_pred             ccCChHHHHHHHHHhcccccchHHHHHHHHHHhhccccCChhhccccHHHHHHHHHHHHHHhhccCCChHHHHHHHHcCC
Confidence            7654  333 33444444444456667777777621   1111          1111111       3345667778889


Q ss_pred             ChHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhh
Q 015851          304 CSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLA  361 (399)
Q Consensus       304 ~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~  361 (399)
                      .++++..+..++..++...--.+..+...|++..+.+-    +.+..+.+..+=++++
T Consensus       423 fpEihcAalktfTAiaaqPWalkeifakeefieiVtDa----stEhaKaakdAkYecc  476 (524)
T KOG4413|consen  423 FPEIHCAALKTFTAIAAQPWALKEIFAKEEFIEIVTDA----STEHAKAAKDAKYECC  476 (524)
T ss_pred             ChhhHHHHHHHHHHHHcCcHHHHHHhcCccceeeeccc----chhhHHHHHHHHHHHH
Confidence            99999999999999986533444555556666555443    3333444444444444

>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]

Probab=98.13  E-value=0.00062  Score=59.63  Aligned_cols=280  Identities=14%  Similarity=0.171  Sum_probs=187.2

Q ss_pred             hhhHHHHhhhhhcchhhhHHHHHHHHHHHHHHcCC-h--hHHH--HHHhCCChHHHHhcccCCCCcccccCCCcchHHHH
Q 015851           59 VSAQVNVLNTTFSWLEADRAAAKRATHVLAELAKN-E--EVVN--WIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVE  133 (399)
Q Consensus        59 ~~~~~~~L~~~l~~~~~~~~~~~~a~~~L~~l~~~-~--~~~~--~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~~~  133 (399)
                      .+..++.|+.-+.  .+|..++.-++..+..+..+ .  ....  .++..|+++.++.++-.++.            ++-
T Consensus        80 apnlmpdLQrGLi--addasVKiLackqigcilEdcDtnaVseillvvNaeilklildcIggedd------------eVA  145 (524)
T KOG4413|consen   80 APNLMPDLQRGLI--ADDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIGGEDD------------EVA  145 (524)
T ss_pred             chhhhHHHHhccc--CCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHcCCcH------------HHH
Confidence            4556666666553  34556777888888888775 2  2222  34478999999999988777            777


Q ss_pred             HHHHHHHHHhcCChhhHHHHHhcCcHHHH--HHHHhccccCccccccHHHHHHHHHHHHHHhhcCchhHHHHHhcCChHH
Q 015851          134 KGSAFALGLLAVKPEHQQLIVDNGALSHL--VNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPP  211 (399)
Q Consensus       134 ~~a~~~L~~l~~~~~~~~~i~~~~~i~~L--~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~  211 (399)
                      ..|...+..++..|...+.+.+++....+  .++-.+.++        -.+...+..+..+.+.++........+|.+..
T Consensus       146 kAAiesikrialfpaaleaiFeSellDdlhlrnlaakcnd--------iaRvRVleLIieifSiSpesaneckkSGLldl  217 (524)
T KOG4413|consen  146 KAAIESIKRIALFPAALEAIFESELLDDLHLRNLAAKCND--------IARVRVLELIIEIFSISPESANECKKSGLLDL  217 (524)
T ss_pred             HHHHHHHHHHHhcHHHHHHhcccccCChHHHhHHHhhhhh--------HHHHHHHHHHHHHHhcCHHHHhHhhhhhHHHH
Confidence            89999999999999998888887766553  333344444        56667788888888777777777777888888


Q ss_pred             HHHhhcC-CCHHHHHHHHHHHHHhhcCChhhHHHHHhcCCHHHHHHhhcC--CCHHHHHHHHHHHHHh----hcC--Chh
Q 015851          212 LVELLEF-TDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRS--EDSAIHYEAVGVIGNL----VHS--SPN  282 (399)
Q Consensus       212 L~~ll~~-~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~L~~ll~~--~~~~v~~~a~~~L~~l----~~~--~~~  282 (399)
                      |..=|+- .+.-++...+.....|+. ...+++.+.+.|.++.+-+++..  .+|--...++...+.+    +..  +++
T Consensus       218 LeaElkGteDtLVianciElvteLae-teHgreflaQeglIdlicnIIsGadsdPfekfralmgfgkffgkeaimdvsee  296 (524)
T KOG4413|consen  218 LEAELKGTEDTLVIANCIELVTELAE-TEHGREFLAQEGLIDLICNIISGADSDPFEKFRALMGFGKFFGKEAIMDVSEE  296 (524)
T ss_pred             HHHHhcCCcceeehhhHHHHHHHHHH-HhhhhhhcchhhHHHHHHHHhhCCCCCcHHHHHHHHHHHHHhcchHHhhcCHH
Confidence            7776665 566777888888888886 55667777788999988888874  3333333344433333    321  111


Q ss_pred             HH-HHHHHCCCcHHHHHhhcCCChHHHHHHHHHHHHhhccChhhHHHHHhcCC--HHHHHH-hhCCCCHHHHHHHHHHHH
Q 015851          283 IK-KEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGA--VRPLIE-MLQSPDVQLREMSAFALG  358 (399)
Q Consensus       283 ~~-~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~--v~~L~~-ll~~~~~~v~~~a~~~L~  358 (399)
                      .. ...+  -+++..++++...++.....|.-+++.+-+ +.++.+.+...|-  ...++. ..+.+-..-+..+..+|.
T Consensus       297 aiceali--iaidgsfEmiEmnDpdaieaAiDalGilGS-nteGadlllkTgppaaehllarafdqnahakqeaaihaLa  373 (524)
T KOG4413|consen  297 AICEALI--IAIDGSFEMIEMNDPDAIEAAIDALGILGS-NTEGADLLLKTGPPAAEHLLARAFDQNAHAKQEAAIHALA  373 (524)
T ss_pred             HHHHHHH--HHHHhhHHhhhcCCchHHHHHHHHHHhccC-CcchhHHHhccCChHHHHHHHHHhcccccchHHHHHHHHH
Confidence            11 1111  245566677778899999999999999964 4677777776553  222222 222233334667778888


Q ss_pred             HhhccC
Q 015851          359 RLAQVI  364 (399)
Q Consensus       359 ~l~~~~  364 (399)
                      +++...
T Consensus       374 aIagel  379 (524)
T KOG4413|consen  374 AIAGEL  379 (524)
T ss_pred             Hhhccc
Confidence            887544

>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.13  E-value=0.00092  Score=64.38  Aligned_cols=212  Identities=16%  Similarity=0.203  Sum_probs=145.5

Q ss_pred             hhHHHHHHHHHHHHHHcCC-hhHHHHHHhCCChHHHHhcccCCCCcccccCCCcchHHHHHHHHHHHHHhc-CChhhHHH
Q 015851           75 ADRAAAKRATHVLAELAKN-EEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA-VKPEHQQL  152 (399)
Q Consensus        75 ~~~~~~~~a~~~L~~l~~~-~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~~~~~a~~~L~~l~-~~~~~~~~  152 (399)
                      .-+.+|.+|+-.|..+.-- |+...     ..+|.|.+-|.++++            .++..|+.+++.|+ .+|.+--.
T Consensus       156 skpYvRKkAIl~lykvFLkYPeAlr-----~~FprL~EkLeDpDp------------~V~SAAV~VICELArKnPknyL~  218 (877)
T KOG1059|consen  156 SKPYVRKKAILLLYKVFLKYPEALR-----PCFPRLVEKLEDPDP------------SVVSAAVSVICELARKNPQNYLQ  218 (877)
T ss_pred             CchHHHHHHHHHHHHHHHhhhHhHh-----hhHHHHHHhccCCCc------------hHHHHHHHHHHHHHhhCCccccc
Confidence            4567788888877777653 44322     357889999998887            67789999999999 78765432


Q ss_pred             HHhcCcHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhhcCCC-HHHHHHHHHHH
Q 015851          153 IVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTD-TKVQRAAAGAL  231 (399)
Q Consensus       153 i~~~~~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~-~~v~~~a~~~L  231 (399)
                           .-|.+.++|.....+       =+....+..+++|+.-.|..     ....++.|.+++.+.. ..+...+..++
T Consensus       219 -----LAP~ffkllttSsNN-------WmLIKiiKLF~aLtplEPRL-----gKKLieplt~li~sT~AmSLlYECvNTV  281 (877)
T KOG1059|consen  219 -----LAPLFYKLLVTSSNN-------WVLIKLLKLFAALTPLEPRL-----GKKLIEPITELMESTVAMSLLYECVNTV  281 (877)
T ss_pred             -----ccHHHHHHHhccCCC-------eehHHHHHHHhhccccCchh-----hhhhhhHHHHHHHhhHHHHHHHHHHHHh
Confidence                 447777887766543       45566788888888766643     2456888999988765 33444443333


Q ss_pred             H--HhhcCChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHHCCCcHHHHHhhcCCChHHHH
Q 015851          232 R--TLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQR  309 (399)
Q Consensus       232 ~--~L~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~  309 (399)
                      .  +++.+.++....+ +. +++.|--++.+.|+.++.-++-+++.+....+...+.     .-+.+++.|...++.+|.
T Consensus       282 Va~s~s~g~~d~~asi-qL-CvqKLr~fiedsDqNLKYlgLlam~KI~ktHp~~Vqa-----~kdlIlrcL~DkD~SIRl  354 (877)
T KOG1059|consen  282 VAVSMSSGMSDHSASI-QL-CVQKLRIFIEDSDQNLKYLGLLAMSKILKTHPKAVQA-----HKDLILRCLDDKDESIRL  354 (877)
T ss_pred             eeehhccCCCCcHHHH-HH-HHHHHhhhhhcCCccHHHHHHHHHHHHhhhCHHHHHH-----hHHHHHHHhccCCchhHH
Confidence            2  4454433332221 11 3556666778899999999999999998665554332     356788999999999999


Q ss_pred             HHHHHHHHhhccChhhHHHH
Q 015851          310 EAALLLGQFAATDSDCKVHI  329 (399)
Q Consensus       310 ~a~~~L~~l~~~~~~~~~~l  329 (399)
                      .|+-.|..+..  .++...+
T Consensus       355 rALdLl~gmVs--kkNl~eI  372 (877)
T KOG1059|consen  355 RALDLLYGMVS--KKNLMEI  372 (877)
T ss_pred             HHHHHHHHHhh--hhhHHHH
Confidence            99999999874  4444443

>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]

Probab=98.13  E-value=0.00049  Score=66.42  Aligned_cols=223  Identities=18%  Similarity=0.161  Sum_probs=144.5

Q ss_pred             HHHHHHHHHHHHhcCChhhH---HHHHhcCcHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhhcCchhHHHHHhcC
Q 015851          131 EVEKGSAFALGLLAVKPEHQ---QLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEG  207 (399)
Q Consensus       131 ~~~~~a~~~L~~l~~~~~~~---~~i~~~~~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~  207 (399)
                      .+|++|+..++.++.--..+   +.+...|  -.|.+.|.....        ++.-..+.+|..+.....-.+..--..+
T Consensus       814 ~vRqqaadlis~la~Vlktc~ee~~m~~lG--vvLyEylgeeyp--------EvLgsILgAikaI~nvigm~km~pPi~d  883 (1172)
T KOG0213|consen  814 KVRQQAADLISSLAKVLKTCGEEKLMGHLG--VVLYEYLGEEYP--------EVLGSILGAIKAIVNVIGMTKMTPPIKD  883 (1172)
T ss_pred             hHHHHHHHHHHHHHHHHHhccHHHHHHHhh--HHHHHhcCcccH--------HHHHHHHHHHHHHHHhccccccCCChhh
Confidence            78889999998888222211   1222333  235566665555        7888888888877743211111112357


Q ss_pred             ChHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhc--CChhHHH
Q 015851          208 GIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVH--SSPNIKK  285 (399)
Q Consensus       208 ~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~--~~~~~~~  285 (399)
                      .+|.|..+|++...+++......++.++...++....--...+.--|+.+|...+.++|..|...++.|+.  +..+...
T Consensus       884 llPrltPILknrheKVqen~IdLvg~IadrgpE~v~aREWMRIcfeLlelLkahkK~iRRaa~nTfG~IakaIGPqdVLa  963 (1172)
T KOG0213|consen  884 LLPRLTPILKNRHEKVQENCIDLVGTIADRGPEYVSAREWMRICFELLELLKAHKKEIRRAAVNTFGYIAKAIGPQDVLA  963 (1172)
T ss_pred             hcccchHhhhhhHHHHHHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhcCHHHHHH
Confidence            89999999999999999999999999998666543222223334457788888889999999999988873  2111111


Q ss_pred             HHH----------------------H-CC---CcHHHHHhhcCCChHHHHHHHHHHHHhhccChh-hHHHHHhcCCHHHH
Q 015851          286 EVL----------------------A-AG---ALQPVIGLLSSCCSESQREAALLLGQFAATDSD-CKVHIVQRGAVRPL  338 (399)
Q Consensus       286 ~~~----------------------~-~~---~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~-~~~~l~~~g~v~~L  338 (399)
                      .++                      + .|   ++|.|+.=-..+...++.-.+.+++.+-..-.+ .++.+..  +.|.|
T Consensus       964 tLlnnLkvqeRq~RvcTtvaIaIVaE~c~pFtVLPalmneYrtPe~nVQnGVLkalsf~FeyigemskdYiya--v~Pll 1041 (1172)
T KOG0213|consen  964 TLLNNLKVQERQNRVCTTVAIAIVAETCGPFTVLPALMNEYRTPEANVQNGVLKALSFMFEYIGEMSKDYIYA--VTPLL 1041 (1172)
T ss_pred             HHHhcchHHHHHhchhhhhhhhhhhhhcCchhhhHHHHhhccCchhHHHHhHHHHHHHHHHHHHHHhhhHHHH--hhHHH
Confidence            111                      1 12   333443333456667887778888777654222 2233322  46888


Q ss_pred             HHhhCCCCHHHHHHHHHHHHHhhccCC
Q 015851          339 IEMLQSPDVQLREMSAFALGRLAQVIT  365 (399)
Q Consensus       339 ~~ll~~~~~~v~~~a~~~L~~l~~~~~  365 (399)
                      -..|.+.|..-|+-|..++..++-+.+
T Consensus      1042 eDAlmDrD~vhRqta~~~I~Hl~Lg~~ 1068 (1172)
T KOG0213|consen 1042 EDALMDRDLVHRQTAMNVIKHLALGVP 1068 (1172)
T ss_pred             HHhhccccHHHHHHHHHHHHHHhcCCC
Confidence            888888899999999999999998754

>PF05536 Neurochondrin: Neurochondrin

Probab=98.07  E-value=0.00061  Score=66.33  Aligned_cols=244  Identities=16%  Similarity=0.146  Sum_probs=159.2

Q ss_pred             hHHHHhcccCCCCcccccCCCcchHHHHHHHHHHHHHhcC-Ch---hhHHHHHhcCcHHHHHHHHhccccCccccccHHH
Q 015851          106 VPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAV-KP---EHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSV  181 (399)
Q Consensus       106 l~~L~~lL~~~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~-~~---~~~~~i~~~~~i~~L~~~L~~~~~~~~~~~~~~~  181 (399)
                      +...+.+|+..++            +=|-.++-.+.++.. ++   ..++.+.++=+.+.+-++|.....+... +....
T Consensus         7 l~~c~~lL~~~~D------------~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~-~~~~~   73 (543)
T PF05536_consen    7 LEKCLSLLKSADD------------TERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDC-PPEEY   73 (543)
T ss_pred             HHHHHHHhccCCc------------HHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCC-CHHHH
Confidence            3445566666553            445566777777773 22   2234566776778888888775432211 12278


Q ss_pred             HHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhhcCCCH-HHHHHHHHHHHHhhcCChhhHHHHHhcCCHHHHHHhhcC
Q 015851          182 IRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDT-KVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRS  260 (399)
Q Consensus       182 ~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~-~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~L~~ll~~  260 (399)
                      +..++.+|+.+|. ++.....-.-.+-||.|++.+.+.+. .+...++.+|..++. .+++...+++.|+++.|...+.+
T Consensus        74 ~~LavsvL~~f~~-~~~~a~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias-~~~G~~aLl~~g~v~~L~ei~~~  151 (543)
T PF05536_consen   74 LSLAVSVLAAFCR-DPELASSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIAS-SPEGAKALLESGAVPALCEIIPN  151 (543)
T ss_pred             HHHHHHHHHHHcC-ChhhhcCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHc-CcHhHHHHHhcCCHHHHHHHHHh
Confidence            8889999999996 55443222234569999999988776 999999999999996 89999999999999999999877


Q ss_pred             CCHHHHHHHHHHHHHhhcCChhHH---HHHHHCCCcHHHHHhhcCCChHHHHHHHHHHHHhhccChhh-HH----HHHhc
Q 015851          261 EDSAIHYEAVGVIGNLVHSSPNIK---KEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDC-KV----HIVQR  332 (399)
Q Consensus       261 ~~~~v~~~a~~~L~~l~~~~~~~~---~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~-~~----~l~~~  332 (399)
                       .+.....|+.++.+++.......   ..-.-..+++.+-..+.......+-+.+..|.++....+.. ..    .-+-.
T Consensus       152 -~~~~~E~Al~lL~~Lls~~~~~~~~~~~~~l~~il~~La~~fs~~~~~~kfell~~L~~~L~~~~~~~~~~~~~~~W~~  230 (543)
T PF05536_consen  152 -QSFQMEIALNLLLNLLSRLGQKSWAEDSQLLHSILPSLARDFSSFHGEDKFELLEFLSAFLPRSPILPLESPPSPKWLS  230 (543)
T ss_pred             -CcchHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhcCcCCccccccCChhhhHH
Confidence             56678888888888875422100   00001134555666666666677788888999887654211 11    11223


Q ss_pred             CCHHHHHHhhCC-CCHHHHHHHHHHHHHhhccCC
Q 015851          333 GAVRPLIEMLQS-PDVQLREMSAFALGRLAQVIT  365 (399)
Q Consensus       333 g~v~~L~~ll~~-~~~~v~~~a~~~L~~l~~~~~  365 (399)
                      .+..-+..++++ ..+.-|..+......+....+
T Consensus       231 ~l~~gl~~iL~sr~~~~~R~~al~Laa~Ll~~~G  264 (543)
T PF05536_consen  231 DLRKGLRDILQSRLTPSQRDPALNLAASLLDLLG  264 (543)
T ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhC
Confidence            344556666655 356666666666666665433

>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.06  E-value=0.00011  Score=71.13  Aligned_cols=124  Identities=20%  Similarity=0.212  Sum_probs=77.2

Q ss_pred             CCHHHHHHHHHHHHHhhcCChhHHHHHHHCCCcHHHHHhhcCCChHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHH
Q 015851          261 EDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIE  340 (399)
Q Consensus       261 ~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~v~~L~~  340 (399)
                      -+.+....+.+++++++..-+..      ++.++.|++++...-.-+..+++.++..+....|..-+.+     ++.+..
T Consensus       362 vD~~fvrkaIraig~~aik~e~~------~~cv~~lLell~~~~~yvvqE~~vvi~dilRkyP~~~~~v-----v~~l~~  430 (734)
T KOG1061|consen  362 VDVDFVRKAVRAIGRLAIKAEQS------NDCVSILLELLETKVDYVVQEAIVVIRDILRKYPNKYESV-----VAILCE  430 (734)
T ss_pred             hCHHHHHHHHHHhhhhhhhhhhh------hhhHHHHHHHHhhcccceeeehhHHHHhhhhcCCCchhhh-----hhhhcc
Confidence            35677777888888887432221      5678888888876665666777777777776665543332     333444


Q ss_pred             hhCC-CCHHHHHHHHHHHHHhhccCCCCcchhHHHHH--hhccccHHHHHHHHhhhHhhh
Q 015851          341 MLQS-PDVQLREMSAFALGRLAQVITVSVLPAILIFI--IINECQLEVLAFVLSEMVLLF  397 (399)
Q Consensus       341 ll~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~  397 (399)
                      -+.+ ++|+.+.+-.|+++.-+..-++.  +.+++.+  -..+...++...++.+.+.+|
T Consensus       431 ~~~sl~epeak~amiWilg~y~~~i~~a--~elL~~f~en~~dE~~~Vql~LLta~ik~F  488 (734)
T KOG1061|consen  431 NLDSLQEPEAKAALIWILGEYAERIENA--LELLESFLENFKDETAEVQLELLTAAIKLF  488 (734)
T ss_pred             cccccCChHHHHHHHHHHhhhhhccCcH--HHHHHHHHhhcccchHHHHHHHHHHHHHHH
Confidence            4433 68899999999999999888873  3333322  122223456556665555443

>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]

Probab=98.06  E-value=0.0015  Score=65.65  Aligned_cols=247  Identities=14%  Similarity=0.140  Sum_probs=168.1

Q ss_pred             hhHHHHHHHHHHHHHHcCChhHHHHHHhCCChHHHHhcccCCCCcccccCCCcchHHHHHHHHHHHHHhcCChhhHHHHH
Q 015851           75 ADRAAAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIV  154 (399)
Q Consensus        75 ~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~i~  154 (399)
                      .++.++.-|+.++..+..+.+....+...|.+..|+.+|++..             ..|..++.+|..|+.+++....-.
T Consensus      1784 ~~~~iq~LaL~Vi~~~Tan~~Cv~~~a~~~vL~~LL~lLHS~P-------------S~R~~vL~vLYAL~S~~~i~keA~ 1850 (2235)
T KOG1789|consen 1784 KHPKLQILALQVILLATANKECVTDLATCNVLTTLLTLLHSQP-------------SMRARVLDVLYALSSNGQIGKEAL 1850 (2235)
T ss_pred             CCchHHHHHHHHHHHHhcccHHHHHHHhhhHHHHHHHHHhcCh-------------HHHHHHHHHHHHHhcCcHHHHHHH
Confidence            3556889999999999999888899999999999999998754             478899999999999999888888


Q ss_pred             hcCcHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhhcC---chhHH------------------------------
Q 015851          155 DNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHEN---SSIKT------------------------------  201 (399)
Q Consensus       155 ~~~~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~---~~~~~------------------------------  201 (399)
                      +.|++..+..++......       ..+.+++..++.+..+.   |....                              
T Consensus      1851 ~hg~l~yil~~~c~~~~~-------QqRAqaAeLlaKl~Adkl~GPrV~ITL~kFLP~~f~d~~RD~PEAaVH~fE~T~E 1923 (2235)
T KOG1789|consen 1851 EHGGLMYILSILCLTNSD-------QQRAQAAELLAKLQADKLTGPRVTITLIKFLPEIFADSLRDSPEAAVHMFESTSE 1923 (2235)
T ss_pred             hcCchhhhhHHHhccCcH-------HHHHHHHHHHHHhhhccccCCceeeehHHhchHHHHHHHhcCHHHHHHHHhccCC
Confidence            999999999888766543       55566666666665211   10000                              


Q ss_pred             --------------------------------------------------------------HHHhc------------C
Q 015851          202 --------------------------------------------------------------RVRME------------G  207 (399)
Q Consensus       202 --------------------------------------------------------------~~~~~------------~  207 (399)
                                                                                    .+.+.            +
T Consensus      1924 nPELiWn~~~r~kvS~~i~tM~~~~y~~QQk~p~~~W~~PEqsAg~~Ea~~E~aVGG~~~R~Fi~~P~f~LR~Pk~FL~~ 2003 (2235)
T KOG1789|consen 1924 NPELIWNEVTRQKVSGIIDTMVGKLYEQQQKDPTVKWNTPEQSAGTSEADKECAVGGSINREFVVGPGFNLRHPKLFLTE 2003 (2235)
T ss_pred             CcccccCHhHHHHHHHHHHHHHHHHHHHhccCCcccccCchhhcchhhhccCcccchhhhHHHhhCCCCcccCHHHHHHH
Confidence                                                                          00000            0


Q ss_pred             ChHHHHHhhcCCCH--HHHHHHHHHHHHhhcCChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHH
Q 015851          208 GIPPLVELLEFTDT--KVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKK  285 (399)
Q Consensus       208 ~i~~L~~ll~~~~~--~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~  285 (399)
                      .+..++++|..+++  ........++..|...+|.....+-.-|.+|.++..+...+..+-..|++.|+.++.+ .-+..
T Consensus      2004 LLek~lelm~~~~peqh~l~lLt~A~V~L~r~hP~LADqip~LGylPK~~~Am~~~n~s~P~SaiRVlH~Lsen-~~C~~ 2082 (2235)
T KOG1789|consen 2004 LLEKVLELMSRPTPEQHELDLLTKAFVELVRHHPNLADQLPSLGYLPKFCTAMCLQNTSAPRSAIRVLHELSEN-QFCCD 2082 (2235)
T ss_pred             HHHHHHHHhcCCCcccchhHHHHHHHHHHHHhCcchhhhCCCccchHHHHHHHHhcCCcCcHHHHHHHHHHhhc-cHHHH
Confidence            01111222222121  1222223344444455566666666778888888888776666668899999999864 66777


Q ss_pred             HHHHCCCcHHHHHhhcCCChHHHHHHHHHHHHhhccCh-hhHHHHHhcCCHHHHHHhhC
Q 015851          286 EVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDS-DCKVHIVQRGAVRPLIEMLQ  343 (399)
Q Consensus       286 ~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~-~~~~~l~~~g~v~~L~~ll~  343 (399)
                      .+.....+..++..+.... ...--|+.+|..+...+. +........|++|.|++++.
T Consensus      2083 AMA~l~~i~~~m~~mkK~~-~~~GLA~EalkR~~~r~~~eLVAQ~LK~gLvpyLL~LLd 2140 (2235)
T KOG1789|consen 2083 AMAQLPCIDGIMKSMKKQP-SLMGLAAEALKRLMKRNTGELVAQMLKCGLVPYLLQLLD 2140 (2235)
T ss_pred             HHhccccchhhHHHHHhcc-hHHHHHHHHHHHHHHHhHHHHHHHHhccCcHHHHHHHhc
Confidence            7777778888888776433 333467777777764332 44455667899999999995

>KOG2259 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.02  E-value=2.3e-05  Score=74.16  Aligned_cols=218  Identities=19%  Similarity=0.202  Sum_probs=131.0

Q ss_pred             hHHHHhcccCCCCcccccCCCcchHHHHHHHHHHHHHhc-CC--hhh----HHHHHhcCcHHHHHHHHhccccCcccccc
Q 015851          106 VPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA-VK--PEH----QQLIVDNGALSHLVNLLKRHMDSNCSRAV  178 (399)
Q Consensus       106 l~~L~~lL~~~~~~~~~~~~~~~~~~~~~~a~~~L~~l~-~~--~~~----~~~i~~~~~i~~L~~~L~~~~~~~~~~~~  178 (399)
                      ....++++++++.            ++|..|++.++..+ ..  |.-    ...+. -.++..+...+.+.+-       
T Consensus       236 Y~~A~~~lsD~~e------------~VR~aAvqlv~v~gn~~p~~~e~e~~e~kl~-D~aF~~vC~~v~D~sl-------  295 (823)
T KOG2259|consen  236 YSRAVKHLSDDYE------------DVRKAAVQLVSVWGNRCPAPLERESEEEKLK-DAAFSSVCRAVRDRSL-------  295 (823)
T ss_pred             HHHHHHHhcchHH------------HHHHHHHHHHHHHHhcCCCcccchhhhhhhH-HHHHHHHHHHHhcCce-------
Confidence            4556677777666            78878866665555 22  111    11111 2256677777776665       


Q ss_pred             HHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHh-hcCCCHHHHHHHHHHHHHhhc-----------CChhhHHHHH
Q 015851          179 NSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVEL-LEFTDTKVQRAAAGALRTLAF-----------KNDENKNQIV  246 (399)
Q Consensus       179 ~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~l-l~~~~~~v~~~a~~~L~~L~~-----------~~~~~~~~~~  246 (399)
                       .++..++.+|+.+-+.++.+-.+-....++..+-.. ..+.-+.-..    .=+.-++           ..++....++
T Consensus       296 -~VRV~AaK~lG~~~~vSee~i~QTLdKKlms~lRRkr~ahkrpk~l~----s~GewSsGk~~~advpsee~d~~~~siI  370 (823)
T KOG2259|consen  296 -SVRVEAAKALGEFEQVSEEIIQQTLDKKLMSRLRRKRTAHKRPKALY----SSGEWSSGKEWNADVPSEEDDEEEESII  370 (823)
T ss_pred             -eeeehHHHHhchHHHhHHHHHHHHHHHHHhhhhhhhhhcccchHHHH----hcCCcccCccccccCchhhccccccccc
Confidence             677788888888776555443333333333322111 0111111110    0000010           1123344577


Q ss_pred             hcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHHCCCcHHHHHhhcCCChHHHHHHHHHHHHhhccChhhH
Q 015851          247 ECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCK  326 (399)
Q Consensus       247 ~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~  326 (399)
                      .+|+...++.-|.++--+||..|...++.|+.+++.....     .+..|+.+++.....+|..|..+|..++..-    
T Consensus       371 ~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~ssP~FA~~-----aldfLvDMfNDE~~~VRL~ai~aL~~Is~~l----  441 (823)
T KOG2259|consen  371 PSGACGALVHGLEDEFYEVRRAAVASLCSLATSSPGFAVR-----ALDFLVDMFNDEIEVVRLKAIFALTMISVHL----  441 (823)
T ss_pred             cccccceeeeechHHHHHHHHHHHHHHHHHHcCCCCcHHH-----HHHHHHHHhccHHHHHHHHHHHHHHHHHHHh----
Confidence            8899999999999888899999999999999877765433     5788999999988899999999999987541    


Q ss_pred             HHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHH
Q 015851          327 VHIVQRGAVRPLIEMLQSPDVQLREMSAFALGR  359 (399)
Q Consensus       327 ~~l~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~  359 (399)
                        .++..-++.++..+.+.++++|++.-..|++
T Consensus       442 --~i~eeql~~il~~L~D~s~dvRe~l~elL~~  472 (823)
T KOG2259|consen  442 --AIREEQLRQILESLEDRSVDVREALRELLKN  472 (823)
T ss_pred             --eecHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence              1222234555555555555555554444443

>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]

Probab=98.01  E-value=0.00024  Score=67.06  Aligned_cols=238  Identities=16%  Similarity=0.129  Sum_probs=147.9

Q ss_pred             ChHHHHhcccCCCCcccccCCCcchHHHHHHHHHHHHHhcCChh-h--HHHHHhcCcHHHHHHHHhccccCccccccHHH
Q 015851          105 AVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPE-H--QQLIVDNGALSHLVNLLKRHMDSNCSRAVNSV  181 (399)
Q Consensus       105 ~l~~L~~lL~~~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~-~--~~~i~~~~~i~~L~~~L~~~~~~~~~~~~~~~  181 (399)
                      ++...+.+|++..+            .+|.+|+...+.|+.--. +  -..+...|  ..|.+.|.....        ++
T Consensus       605 ivStiL~~L~~k~p------------~vR~~aadl~~sl~~vlk~c~e~~~l~klg--~iLyE~lge~yp--------Ev  662 (975)
T COG5181         605 IVSTILKLLRSKPP------------DVRIRAADLMGSLAKVLKACGETKELAKLG--NILYENLGEDYP--------EV  662 (975)
T ss_pred             HHHHHHHHhcCCCc------------cHHHHHHHHHHHHHHHHHhcchHHHHHHHh--HHHHHhcCcccH--------HH
Confidence            34555666776666            678888888888872111 1  11222222  223444444443        77


Q ss_pred             HHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhhHHHHHhcCCHHHHHHhhcCC
Q 015851          182 IRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSE  261 (399)
Q Consensus       182 ~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~L~~ll~~~  261 (399)
                      .-..+.++..+.....--..+.-..|.+|.|..+|++...++.......++.++...++....--...+.--|+.+|.+.
T Consensus       663 Lgsil~Ai~~I~sv~~~~~mqpPi~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEWMRIcfeLvd~Lks~  742 (975)
T COG5181         663 LGSILKAICSIYSVHRFRSMQPPISGILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIGVREWMRICFELVDSLKSW  742 (975)
T ss_pred             HHHHHHHHHHHhhhhcccccCCchhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHh
Confidence            77777777777743322111122358899999999999999999999999999986665332221223344578888888


Q ss_pred             CHHHHHHHHHHHHHhhc--CChhHHHHHH----------------------H-CC---CcHHHHHhhcCCChHHHHHHHH
Q 015851          262 DSAIHYEAVGVIGNLVH--SSPNIKKEVL----------------------A-AG---ALQPVIGLLSSCCSESQREAAL  313 (399)
Q Consensus       262 ~~~v~~~a~~~L~~l~~--~~~~~~~~~~----------------------~-~~---~l~~L~~lL~~~~~~v~~~a~~  313 (399)
                      +.++|.+|...++.|+.  +..+....+.                      + .|   ++|.|+.=-.++...++...+.
T Consensus       743 nKeiRR~A~~tfG~Is~aiGPqdvL~~LlnnLkvqeRq~RvctsvaI~iVae~cgpfsVlP~lm~dY~TPe~nVQnGvLk  822 (975)
T COG5181         743 NKEIRRNATETFGCISRAIGPQDVLDILLNNLKVQERQQRVCTSVAISIVAEYCGPFSVLPTLMSDYETPEANVQNGVLK  822 (975)
T ss_pred             hHHHHHhhhhhhhhHHhhcCHHHHHHHHHhcchHHHHHhhhhhhhhhhhhHhhcCchhhHHHHHhcccCchhHHHHhHHH
Confidence            99999999998888873  2111111111                      1 12   2333333333556677777777


Q ss_pred             HHHHhhccChh-hHHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhccCCC
Q 015851          314 LLGQFAATDSD-CKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQVITV  366 (399)
Q Consensus       314 ~L~~l~~~~~~-~~~~l~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~  366 (399)
                      +++.+-..-.+ .++.+  ..+.|.|-+.+.+.|+.-|+.|...+..|+-+.+.
T Consensus       823 am~fmFeyig~~s~dYv--y~itPlleDAltDrD~vhRqta~nvI~Hl~Lnc~g  874 (975)
T COG5181         823 AMCFMFEYIGQASLDYV--YSITPLLEDALTDRDPVHRQTAMNVIRHLVLNCPG  874 (975)
T ss_pred             HHHHHHHHHHHHHHHHH--HHhhHHHHhhhcccchHHHHHHHHHHHHHhcCCCC
Confidence            77766543211 22222  23467888888889999999999999999988553

>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]

Probab=98.01  E-value=0.0038  Score=62.82  Aligned_cols=141  Identities=17%  Similarity=0.165  Sum_probs=112.9

Q ss_pred             HHHHHHHHHHHHhhcCChhhHHHHHh----cCCHHHHHHhhcC-CCHHHHHHHHHHHHHhhcCChhHHHHHHHCCCcHHH
Q 015851          222 KVQRAAAGALRTLAFKNDENKNQIVE----CNALPTLILMLRS-EDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPV  296 (399)
Q Consensus       222 ~v~~~a~~~L~~L~~~~~~~~~~~~~----~~~~~~L~~ll~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L  296 (399)
                      +-...++.+|.|+...+|+....+-.    -|.++.+...+.. .++.++..|+..+..++.+ .++...+...+.+..|
T Consensus      1740 ~~v~m~LtAL~Nli~~nPdlasvfgSe~~lig~F~l~~~~lr~~~~~~iq~LaL~Vi~~~Tan-~~Cv~~~a~~~vL~~L 1818 (2235)
T KOG1789|consen 1740 TKVLMTLTALANLVSANPDLASVFGSEILLIGNFPLLITYLRCRKHPKLQILALQVILLATAN-KECVTDLATCNVLTTL 1818 (2235)
T ss_pred             HHHHHHHHHHHHHHhhCcchhhhccchhhhhcccHHHHHHHHHcCCchHHHHHHHHHHHHhcc-cHHHHHHHhhhHHHHH
Confidence            35678899999999988876655443    4667888877764 6889999999999888754 6777888899988888


Q ss_pred             HHhhcCCChHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHhh-CCCCHHHHHHHHHHHHHhhccCC
Q 015851          297 IGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEML-QSPDVQLREMSAFALGRLAQVIT  365 (399)
Q Consensus       297 ~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~v~~L~~ll-~~~~~~v~~~a~~~L~~l~~~~~  365 (399)
                      +.+|.+ .|..|..++.+|..+++ +++........|++..+..++ .+++++.|..++..++.+..+.-
T Consensus      1819 L~lLHS-~PS~R~~vL~vLYAL~S-~~~i~keA~~hg~l~yil~~~c~~~~~QqRAqaAeLlaKl~Adkl 1886 (2235)
T KOG1789|consen 1819 LTLLHS-QPSMRARVLDVLYALSS-NGQIGKEALEHGGLMYILSILCLTNSDQQRAQAAELLAKLQADKL 1886 (2235)
T ss_pred             HHHHhc-ChHHHHHHHHHHHHHhc-CcHHHHHHHhcCchhhhhHHHhccCcHHHHHHHHHHHHHhhhccc
Confidence            888865 45788999999999986 467777778888888888777 56789999999999999986544

>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A

Probab=97.99  E-value=3.5e-05  Score=55.64  Aligned_cols=86  Identities=35%  Similarity=0.506  Sum_probs=69.9

Q ss_pred             HHHHHHhh-cCCCHHHHHHHHHHHHHhhcCChhHHHHHHHCCCcHHHHHhhcCCChHHHHHHHHHHHHhhccChhhHHHH
Q 015851          251 LPTLILML-RSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHI  329 (399)
Q Consensus       251 ~~~L~~ll-~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l  329 (399)
                      +|.|++.| +++++.++..++++|+.+-  ++         .+++.|+.+++++++.++..|+++|+.+-          
T Consensus         1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~--~~---------~~~~~L~~~l~d~~~~vr~~a~~aL~~i~----------   59 (88)
T PF13646_consen    1 IPALLQLLQNDPDPQVRAEAARALGELG--DP---------EAIPALIELLKDEDPMVRRAAARALGRIG----------   59 (88)
T ss_dssp             HHHHHHHHHTSSSHHHHHHHHHHHHCCT--HH---------HHHHHHHHHHTSSSHHHHHHHHHHHHCCH----------
T ss_pred             CHHHHHHHhcCCCHHHHHHHHHHHHHcC--CH---------hHHHHHHHHHcCCCHHHHHHHHHHHHHhC----------
Confidence            57889888 7889999999999999662  12         24899999999999999999999999873          


Q ss_pred             HhcCCHHHHHHhhCC-CCHHHHHHHHHHHH
Q 015851          330 VQRGAVRPLIEMLQS-PDVQLREMSAFALG  358 (399)
Q Consensus       330 ~~~g~v~~L~~ll~~-~~~~v~~~a~~~L~  358 (399)
                       ....++.|.+++.+ .+..++..|..+|+
T Consensus        60 -~~~~~~~L~~~l~~~~~~~vr~~a~~aL~   88 (88)
T PF13646_consen   60 -DPEAIPALIKLLQDDDDEVVREAAAEALG   88 (88)
T ss_dssp             -HHHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred             -CHHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence             23368889998876 45667899988874

>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]

Probab=97.99  E-value=0.0023  Score=60.84  Aligned_cols=276  Identities=15%  Similarity=0.140  Sum_probs=158.0

Q ss_pred             HHHhhhhhcchhhhHHHHHHHHHHHHHHcCChhHHHHHHhCCChHHHHhcccCCCCcccccCCCcchHHHHHHHHHHHHH
Q 015851           63 VNVLNTTFSWLEADRAAAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGL  142 (399)
Q Consensus        63 ~~~L~~~l~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~~~~~a~~~L~~  142 (399)
                      .+.+.+.+.  ..+...|..+.+.+..+..+.-. ..+.+.+++..+...+.+.....           -++.+..+...
T Consensus       136 l~~l~~ll~--~~~~~~~~~aa~~~ag~v~g~~i-~~~~~~~~l~~l~~ai~dk~~~~-----------~re~~~~a~~~  201 (569)
T KOG1242|consen  136 LELLLELLT--STKIAERAGAAYGLAGLVNGLGI-ESLKEFGFLDNLSKAIIDKKSAL-----------NREAALLAFEA  201 (569)
T ss_pred             HHHHHHHhc--cccHHHHhhhhHHHHHHHcCcHH-hhhhhhhHHHHHHHHhcccchhh-----------cHHHHHHHHHH
Confidence            334444442  33455666777777777665322 33456677888888777655521           12222222222


Q ss_pred             hcCChhhHHHHHhcCcHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhhcCCCHH
Q 015851          143 LAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTK  222 (399)
Q Consensus       143 l~~~~~~~~~i~~~~~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~  222 (399)
                      .+.+-.   ...+.+.++.+-.++.+..+...     .++..+..+...+...-+..    .-...+|.++.-+....+.
T Consensus       202 ~~~~Lg---~~~EPyiv~~lp~il~~~~d~~~-----~Vr~Aa~~a~kai~~~~~~~----aVK~llpsll~~l~~~kWr  269 (569)
T KOG1242|consen  202 AQGNLG---PPFEPYIVPILPSILTNFGDKIN-----KVREAAVEAAKAIMRCLSAY----AVKLLLPSLLGSLLEAKWR  269 (569)
T ss_pred             HHHhcC---CCCCchHHhhHHHHHHHhhccch-----hhhHHHHHHHHHHHHhcCcc----hhhHhhhhhHHHHHHHhhh
Confidence            221100   11123344444444444332221     66666666555555322211    1122344444444444778


Q ss_pred             HHHHHHHHHHHhhcCChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcC--ChhHHHHHH------------
Q 015851          223 VQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHS--SPNIKKEVL------------  288 (399)
Q Consensus       223 v~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~--~~~~~~~~~------------  288 (399)
                      ....++..++.++.. ....-...-..++|.+...|.+.+++++..+..++..++..  +++ ++.++            
T Consensus       270 tK~aslellg~m~~~-ap~qLs~~lp~iiP~lsevl~DT~~evr~a~~~~l~~~~svidN~d-I~~~ip~Lld~l~dp~~  347 (569)
T KOG1242|consen  270 TKMASLELLGAMADC-APKQLSLCLPDLIPVLSEVLWDTKPEVRKAGIETLLKFGSVIDNPD-IQKIIPTLLDALADPSC  347 (569)
T ss_pred             hHHHHHHHHHHHHHh-chHHHHHHHhHhhHHHHHHHccCCHHHHHHHHHHHHHHHHhhccHH-HHHHHHHHHHHhcCccc
Confidence            889999999999874 44444555567999999999999999999999999888742  121 11111            


Q ss_pred             ------------------HCCCcHHHHHh----hcCCChHHHHHHHHHHHHhhccC--hhhHHHHHhcCCHHHHHHhhCC
Q 015851          289 ------------------AAGALQPVIGL----LSSCCSESQREAALLLGQFAATD--SDCKVHIVQRGAVRPLIEMLQS  344 (399)
Q Consensus       289 ------------------~~~~l~~L~~l----L~~~~~~v~~~a~~~L~~l~~~~--~~~~~~l~~~g~v~~L~~ll~~  344 (399)
                                        +...+..++.+    +...+...++.++.+++|++.--  +.....++. .++|-|-..+.+
T Consensus       348 ~~~e~~~~L~~ttFV~~V~~psLalmvpiL~R~l~eRst~~kr~t~~IidNm~~LveDp~~lapfl~-~Llp~lk~~~~d  426 (569)
T KOG1242|consen  348 YTPECLDSLGATTFVAEVDAPSLALMVPILKRGLAERSTSIKRKTAIIIDNMCKLVEDPKDLAPFLP-SLLPGLKENLDD  426 (569)
T ss_pred             chHHHHHhhcceeeeeeecchhHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHhhcCHHHHhhhHH-HHhhHHHHHhcC
Confidence                              11122233333    33445678888999999998643  222222222 246666667777


Q ss_pred             CCHHHHHHHHHHHHHhhccCCCC
Q 015851          345 PDVQLREMSAFALGRLAQVITVS  367 (399)
Q Consensus       345 ~~~~v~~~a~~~L~~l~~~~~~~  367 (399)
                      ..|++|..+..+|+.+-+.-.+.
T Consensus       427 ~~PEvR~vaarAL~~l~e~~g~~  449 (569)
T KOG1242|consen  427 AVPEVRAVAARALGALLERLGEV  449 (569)
T ss_pred             CChhHHHHHHHHHHHHHHHHHhh
Confidence            89999999999998877766553

>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A

Probab=97.98  E-value=1.7e-05  Score=57.25  Aligned_cols=86  Identities=34%  Similarity=0.448  Sum_probs=69.2

Q ss_pred             hHHHHHhh-cCCCHHHHHHHHHHHHHhhcCChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHH
Q 015851          209 IPPLVELL-EFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEV  287 (399)
Q Consensus       209 i~~L~~ll-~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~  287 (399)
                      |+.|++.| +++++.++..++.+|+.+-.  +         ..++.|+.+++++++.++..|+++|+.+-          
T Consensus         1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~~--~---------~~~~~L~~~l~d~~~~vr~~a~~aL~~i~----------   59 (88)
T PF13646_consen    1 IPALLQLLQNDPDPQVRAEAARALGELGD--P---------EAIPALIELLKDEDPMVRRAAARALGRIG----------   59 (88)
T ss_dssp             HHHHHHHHHTSSSHHHHHHHHHHHHCCTH--H---------HHHHHHHHHHTSSSHHHHHHHHHHHHCCH----------
T ss_pred             CHHHHHHHhcCCCHHHHHHHHHHHHHcCC--H---------hHHHHHHHHHcCCCHHHHHHHHHHHHHhC----------
Confidence            57888988 88899999999999995532  2         35899999999999999999999999883          


Q ss_pred             HHCCCcHHHHHhhcCC-ChHHHHHHHHHHH
Q 015851          288 LAAGALQPVIGLLSSC-CSESQREAALLLG  316 (399)
Q Consensus       288 ~~~~~l~~L~~lL~~~-~~~v~~~a~~~L~  316 (399)
                       +...++.|.+++.++ +..++..|+.+|+
T Consensus        60 -~~~~~~~L~~~l~~~~~~~vr~~a~~aL~   88 (88)
T PF13646_consen   60 -DPEAIPALIKLLQDDDDEVVREAAAEALG   88 (88)
T ss_dssp             -HHHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred             -CHHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence             123788999988765 4566888888875

>COG1413 FOG: HEAT repeat [Energy production and conversion]

Probab=97.97  E-value=0.00099  Score=61.40  Aligned_cols=190  Identities=33%  Similarity=0.410  Sum_probs=139.6

Q ss_pred             CChHHHHhcccCCCCcccccCCCcchHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHHHhccccCccccccHHHHH
Q 015851          104 GAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIR  183 (399)
Q Consensus       104 g~l~~L~~lL~~~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~~~i~~L~~~L~~~~~~~~~~~~~~~~~  183 (399)
                      ..++.+.+++.+.+.            .+|..+.+.++.+..          ..+++.+..++.+.+.        .++.
T Consensus        43 ~~~~~~~~~l~~~~~------------~vr~~aa~~l~~~~~----------~~av~~l~~~l~d~~~--------~vr~   92 (335)
T COG1413          43 EAADELLKLLEDEDL------------LVRLSAAVALGELGS----------EEAVPLLRELLSDEDP--------RVRD   92 (335)
T ss_pred             hhHHHHHHHHcCCCH------------HHHHHHHHHHhhhch----------HHHHHHHHHHhcCCCH--------HHHH
Confidence            457778888888755            688888888776652          2268899999988776        7888


Q ss_pred             HHHHHHHHHhhcCchhHHHHHhcCChHHHHHhhc-CCCHHHHHHHHHHHHHhhcCChhhHHHHHhcCCHHHHHHhhcCCC
Q 015851          184 RAADAITNLAHENSSIKTRVRMEGGIPPLVELLE-FTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSED  262 (399)
Q Consensus       184 ~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~-~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~L~~ll~~~~  262 (399)
                      .+..+|+.+-.           ...++.++.++. +++..+|..+.++|+.+-..  .         .+..++..+.++.
T Consensus        93 ~a~~aLg~~~~-----------~~a~~~li~~l~~d~~~~vR~~aa~aL~~~~~~--~---------a~~~l~~~l~~~~  150 (335)
T COG1413          93 AAADALGELGD-----------PEAVPPLVELLENDENEGVRAAAARALGKLGDE--R---------ALDPLLEALQDED  150 (335)
T ss_pred             HHHHHHHccCC-----------hhHHHHHHHHHHcCCcHhHHHHHHHHHHhcCch--h---------hhHHHHHHhccch
Confidence            88887666542           344677888888 58899999999999988862  1         2566666666644


Q ss_pred             H------------HHHHHHHHHHHHhhcCChhHHHHHHHCCCcHHHHHhhcCCChHHHHHHHHHHHHhhccChhhHHHHH
Q 015851          263 S------------AIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIV  330 (399)
Q Consensus       263 ~------------~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~  330 (399)
                      .            .++..+...++.+-  ++         ..++.+...+......++..|..+|+.+...+        
T Consensus       151 ~~~a~~~~~~~~~~~r~~a~~~l~~~~--~~---------~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~--------  211 (335)
T COG1413         151 SGSAAAALDAALLDVRAAAAEALGELG--DP---------EAIPLLIELLEDEDADVRRAAASALGQLGSEN--------  211 (335)
T ss_pred             hhhhhhhccchHHHHHHHHHHHHHHcC--Ch---------hhhHHHHHHHhCchHHHHHHHHHHHHHhhcch--------
Confidence            1            45666666666652  22         25788888898888899999999999987542        


Q ss_pred             hcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhccCC
Q 015851          331 QRGAVRPLIEMLQSPDVQLREMSAFALGRLAQVIT  365 (399)
Q Consensus       331 ~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~  365 (399)
                       ..+.+.+...+.+++..+|..++.+|+.+.....
T Consensus       212 -~~~~~~l~~~~~~~~~~vr~~~~~~l~~~~~~~~  245 (335)
T COG1413         212 -VEAADLLVKALSDESLEVRKAALLALGEIGDEEA  245 (335)
T ss_pred             -hhHHHHHHHHhcCCCHHHHHHHHHHhcccCcchh
Confidence             3445778888888888898888888877765444

>COG5369 Uncharacterized conserved protein [Function unknown]

Probab=97.96  E-value=3.5e-05  Score=71.40  Aligned_cols=182  Identities=14%  Similarity=0.136  Sum_probs=141.1

Q ss_pred             HHHHHHHHhhcCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhhHHHHHhcCCHHHHHHhhcCCCHH
Q 015851          185 AADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSA  264 (399)
Q Consensus       185 a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~  264 (399)
                      ++-.|..++..-...+.-+....+...|+++|++++..+...+...+.|...........+++.|++..|++++.+.|..
T Consensus       409 ~~l~LkS~SrSV~~LRTgL~d~~I~elLi~~Ls~Peimi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~sKDda  488 (743)
T COG5369         409 IVLFLKSMSRSVTFLRTGLLDYPIVELLIDALSNPEIMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVMSKDDA  488 (743)
T ss_pred             HHHHHHHhhHHHHHHHhhccccchHHHHHHHhcCccceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhhcchhh
Confidence            44455566654444555566677889999999998888888999999999987777888899999999999999999999


Q ss_pred             HHHHHHHHHHHhhcCChh-HHHHHHHCCCcHHHHHhhcCCChHHHHHHHHHHHHhhccChhh---HHHHHh---cC-CHH
Q 015851          265 IHYEAVGVIGNLVHSSPN-IKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDC---KVHIVQ---RG-AVR  336 (399)
Q Consensus       265 v~~~a~~~L~~l~~~~~~-~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~---~~~l~~---~g-~v~  336 (399)
                      ++....|.+..+..+..+ .+..++..-++..++++.+.+...++......|.|++.....+   +..+..   .. +.+
T Consensus       489 Lqans~wvlrHlmyncq~~ekf~~Lakig~~kvl~~~NDpc~~vq~q~lQilrNftc~~~knEkskdv~~K~~p~~ylfk  568 (743)
T COG5369         489 LQANSEWVLRHLMYNCQKNEKFKFLAKIGVEKVLSYTNDPCFKVQHQVLQILRNFTCDTSKNEKSKDVFIKATPRRYLFK  568 (743)
T ss_pred             hhhcchhhhhhhhhcCcchhhhhhHHhcCHHHHHHHhcCcccccHHHHHHHHHhcccccccccccceeEEecChHHHHHH
Confidence            999999999999876544 3456778889999999999999999999999999998632221   221111   11 456


Q ss_pred             HHHHhhCCCCHHHHHHHHHHHHHhhccCCC
Q 015851          337 PLIEMLQSPDVQLREMSAFALGRLAQVITV  366 (399)
Q Consensus       337 ~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~  366 (399)
                      .|++.+...+|......+..|.+++.-.++
T Consensus       569 ~l~~k~e~~np~~i~~~~yilv~~aa~d~~  598 (743)
T COG5369         569 RLIDKYEENNPMEILEGCYILVRNAACDDT  598 (743)
T ss_pred             HHHHHHHhcCchhhhhhHHHHHHHHhccch
Confidence            677777777777777778888877765554

>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]

Probab=97.96  E-value=0.00015  Score=62.87  Aligned_cols=184  Identities=18%  Similarity=0.141  Sum_probs=113.2

Q ss_pred             hhhhHHHHHHHHHHHHHHcCCh---hHHHHHHhC--CChHHHHhcccCCCCcccccCCCcchHHHHHHHHHHHHHhcC--
Q 015851           73 LEADRAAAKRATHVLAELAKNE---EVVNWIVEG--GAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAV--  145 (399)
Q Consensus        73 ~~~~~~~~~~a~~~L~~l~~~~---~~~~~~~~~--g~l~~L~~lL~~~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~--  145 (399)
                      .+.+...|..|+..|..+..+.   .....+...  .++..+...+.+...            .+...|+.++..++.  
T Consensus        17 ~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs------------~v~~~A~~~l~~l~~~l   84 (228)
T PF12348_consen   17 SESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRS------------KVSKTACQLLSDLARQL   84 (228)
T ss_dssp             T-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---------------HHHHHHHHHHHHHHHH
T ss_pred             CccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHH------------HHHHHHHHHHHHHHHHH
Confidence            4567778889999998887632   333333221  566677777765554            677899999999982  


Q ss_pred             ChhhHHHHHhcCcHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhhcCCCHHHHH
Q 015851          146 KPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQR  225 (399)
Q Consensus       146 ~~~~~~~i~~~~~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~  225 (399)
                      .......  -..+++.|++.+.+...        .+...+..+|..++...+.... +    .++.+...+.+.++.+|.
T Consensus        85 ~~~~~~~--~~~~l~~Ll~~~~~~~~--------~i~~~a~~~L~~i~~~~~~~~~-~----~~~~l~~~~~~Kn~~vR~  149 (228)
T PF12348_consen   85 GSHFEPY--ADILLPPLLKKLGDSKK--------FIREAANNALDAIIESCSYSPK-I----LLEILSQGLKSKNPQVRE  149 (228)
T ss_dssp             GGGGHHH--HHHHHHHHHHGGG---H--------HHHHHHHHHHHHHHTTS-H--H-H----HHHHHHHHTT-S-HHHHH
T ss_pred             hHhHHHH--HHHHHHHHHHHHccccH--------HHHHHHHHHHHHHHHHCCcHHH-H----HHHHHHHHHhCCCHHHHH
Confidence            2223332  22377888888887665        7888899999999965441111 1    145677778899999999


Q ss_pred             HHHHHHHHhhcCCh---hhHHH-HHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhH
Q 015851          226 AAAGALRTLAFKND---ENKNQ-IVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNI  283 (399)
Q Consensus       226 ~a~~~L~~L~~~~~---~~~~~-~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~  283 (399)
                      .++..+..+....+   ..... ..-..+++.+.+.+.+.+++||..|-.+++.+....++.
T Consensus       150 ~~~~~l~~~l~~~~~~~~~l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~~~~  211 (228)
T PF12348_consen  150 ECAEWLAIILEKWGSDSSVLQKSAFLKQLVKALVKLLSDADPEVREAARECLWALYSHFPER  211 (228)
T ss_dssp             HHHHHHHHHHTT-----GGG--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH-HH
T ss_pred             HHHHHHHHHHHHccchHhhhcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCHh
Confidence            99999999987544   11111 111346788899999999999999999999986544443

The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.

>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]

Probab=97.91  E-value=0.00087  Score=63.65  Aligned_cols=243  Identities=17%  Similarity=0.191  Sum_probs=153.0

Q ss_pred             ChHHHHhcccCCCCcccccCCCcchHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHHHhccccCccccccHHHHHH
Q 015851          105 AVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRR  184 (399)
Q Consensus       105 ~l~~L~~lL~~~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~~~i~~L~~~L~~~~~~~~~~~~~~~~~~  184 (399)
                      ++..+++-++.+..            .+|+....+|..+.-..+...   ...+.+.+.+++.....        .-+..
T Consensus        97 ~~~~~~~~~~tps~------------~~q~~~~~~l~~~~~~~~~~~---~~~~l~~l~~ll~~~~~--------~~~~~  153 (569)
T KOG1242|consen   97 IIEILLEELDTPSK------------SVQRAVSTCLPPLVVLSKGLS---GEYVLELLLELLTSTKI--------AERAG  153 (569)
T ss_pred             HHHHHHHhcCCCcH------------HHHHHHHHHhhhHHHHhhccC---HHHHHHHHHHHhccccH--------HHHhh
Confidence            45556565555544            677777777777662221111   11245666666664443        56677


Q ss_pred             HHHHHHHHhhcCchhHHHHHhcCChHHHHHhhcCCCHHHHHH-HHHHHHHhhcCChhhHHHHHhcCC---HHHHHHhhcC
Q 015851          185 AADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRA-AAGALRTLAFKNDENKNQIVECNA---LPTLILMLRS  260 (399)
Q Consensus       185 a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~-a~~~L~~L~~~~~~~~~~~~~~~~---~~~L~~ll~~  260 (399)
                      +.+.++.+..+..  -..+...+.+..+.....+.....++. ++.+.-.....-.    ...+.++   +|.+...+.+
T Consensus       154 aa~~~ag~v~g~~--i~~~~~~~~l~~l~~ai~dk~~~~~re~~~~a~~~~~~~Lg----~~~EPyiv~~lp~il~~~~d  227 (569)
T KOG1242|consen  154 AAYGLAGLVNGLG--IESLKEFGFLDNLSKAIIDKKSALNREAALLAFEAAQGNLG----PPFEPYIVPILPSILTNFGD  227 (569)
T ss_pred             hhHHHHHHHcCcH--HhhhhhhhHHHHHHHHhcccchhhcHHHHHHHHHHHHHhcC----CCCCchHHhhHHHHHHHhhc
Confidence            8888888884332  234566788888888888876555443 3333322222111    2223334   4444445556


Q ss_pred             CCHHHHHHHHHHHHHhhcCChhHHHHHHHCCCcHHHHHhhcCCChHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHH
Q 015851          261 EDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIE  340 (399)
Q Consensus       261 ~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~v~~L~~  340 (399)
                      ..+.+|..|..+...+....+......    +++.++.-+....+..+..++..++.++...+. .-.+.-..++|.+.+
T Consensus       228 ~~~~Vr~Aa~~a~kai~~~~~~~aVK~----llpsll~~l~~~kWrtK~aslellg~m~~~ap~-qLs~~lp~iiP~lse  302 (569)
T KOG1242|consen  228 KINKVREAAVEAAKAIMRCLSAYAVKL----LLPSLLGSLLEAKWRTKMASLELLGAMADCAPK-QLSLCLPDLIPVLSE  302 (569)
T ss_pred             cchhhhHHHHHHHHHHHHhcCcchhhH----hhhhhHHHHHHHhhhhHHHHHHHHHHHHHhchH-HHHHHHhHhhHHHHH
Confidence            678888888777777654433322222    356666555555778888899999988865443 344555678999999


Q ss_pred             hhCCCCHHHHHHHHHHHHHhhccCCCC----cchhHHHHHhhccc
Q 015851          341 MLQSPDVQLREMSAFALGRLAQVITVS----VLPAILIFIIINEC  381 (399)
Q Consensus       341 ll~~~~~~v~~~a~~~L~~l~~~~~~~----~~~~~~~~~~~~~~  381 (399)
                      .|.++.+++++.+..+|.+++.-..|.    ++|.++..+...++
T Consensus       303 vl~DT~~evr~a~~~~l~~~~svidN~dI~~~ip~Lld~l~dp~~  347 (569)
T KOG1242|consen  303 VLWDTKPEVRKAGIETLLKFGSVIDNPDIQKIIPTLLDALADPSC  347 (569)
T ss_pred             HHccCCHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhcCccc
Confidence            999999999999999999999988875    55666666555554

>PF05536 Neurochondrin: Neurochondrin

Probab=97.90  E-value=0.001  Score=64.84  Aligned_cols=195  Identities=19%  Similarity=0.133  Sum_probs=139.0

Q ss_pred             cHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhhcCch---hHHHHHhcCChHHHHHhhcC-------CCHHHHHHH
Q 015851          158 ALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSS---IKTRVRMEGGIPPLVELLEF-------TDTKVQRAA  227 (399)
Q Consensus       158 ~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~---~~~~~~~~~~i~~L~~ll~~-------~~~~v~~~a  227 (399)
                      .+...+++|+...+        +=+-.++..+..++..++.   .+..+.+.-+.+.+-++|.+       +....+.-|
T Consensus         6 ~l~~c~~lL~~~~D--------~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~La   77 (543)
T PF05536_consen    6 SLEKCLSLLKSADD--------TERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLA   77 (543)
T ss_pred             HHHHHHHHhccCCc--------HHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHH
Confidence            46677788888775        6667788888888865542   23346677777888888877       235678889


Q ss_pred             HHHHHHhhcCChhhH--HHHHhcCCHHHHHHhhcCCCH-HHHHHHHHHHHHhhcCChhHHHHHHHCCCcHHHHHhhcCCC
Q 015851          228 AGALRTLAFKNDENK--NQIVECNALPTLILMLRSEDS-AIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCC  304 (399)
Q Consensus       228 ~~~L~~L~~~~~~~~--~~~~~~~~~~~L~~ll~~~~~-~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~  304 (399)
                      ...|..++. .++..  ..++.  -+|.|+..+...+. ++...++.+|..++ ..+.+...+++.|.++.|.+.+.+ +
T Consensus        78 vsvL~~f~~-~~~~a~~~~~~~--~IP~Lle~l~~~s~~~~v~dalqcL~~Ia-s~~~G~~aLl~~g~v~~L~ei~~~-~  152 (543)
T PF05536_consen   78 VSVLAAFCR-DPELASSPQMVS--RIPLLLEILSSSSDLETVDDALQCLLAIA-SSPEGAKALLESGAVPALCEIIPN-Q  152 (543)
T ss_pred             HHHHHHHcC-ChhhhcCHHHHH--HHHHHHHHHHcCCchhHHHHHHHHHHHHH-cCcHhHHHHHhcCCHHHHHHHHHh-C
Confidence            999999998 55543  33444  59999999987766 99999999999999 558889999999999999999987 5


Q ss_pred             hHHHHHHHHHHHHhhccChh-hHH--HHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhccCC
Q 015851          305 SESQREAALLLGQFAATDSD-CKV--HIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQVIT  365 (399)
Q Consensus       305 ~~v~~~a~~~L~~l~~~~~~-~~~--~l~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~  365 (399)
                      +.....|..++.+++..... ...  .-.-..+++.+-..........+-..+..|..+-...+
T Consensus       153 ~~~~E~Al~lL~~Lls~~~~~~~~~~~~~l~~il~~La~~fs~~~~~~kfell~~L~~~L~~~~  216 (543)
T PF05536_consen  153 SFQMEIALNLLLNLLSRLGQKSWAEDSQLLHSILPSLARDFSSFHGEDKFELLEFLSAFLPRSP  216 (543)
T ss_pred             cchHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhcCcCC
Confidence            56788888888888764321 100  00001334555555554455555667777777776663

>KOG2734 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.89  E-value=0.012  Score=53.79  Aligned_cols=232  Identities=18%  Similarity=0.239  Sum_probs=164.9

Q ss_pred             hhHHHHHHHHHHHHHHcCC----------hhHHHHHHhCCChHHHHhcccCCCCcccccCCCcchHHHHHHHHHHHHHhc
Q 015851           75 ADRAAAKRATHVLAELAKN----------EEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA  144 (399)
Q Consensus        75 ~~~~~~~~a~~~L~~l~~~----------~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~~~~~a~~~L~~l~  144 (399)
                      ++..+-...+..|..+...          ....+++++.++++.|++-+..-+..+.+      +.+=...+...+-|+.
T Consensus       137 eNtDI~iavvdLLqELTD~Dv~~es~egAevLidaLvdg~vlaLLvqnveRLdEsvke------ea~gv~~~L~vveNlv  210 (536)
T KOG2734|consen  137 ENTDIAIAVVDLLQELTDEDVLYESEEGAEVLIDALVDGQVLALLVQNVERLDESVKE------EADGVHNTLAVVENLV  210 (536)
T ss_pred             CCchhHHHHHHHHHHhhhhcccccccccHHHHHHHHHhccHHHHHHHHHHHhhhcchh------hhhhhHHHHHHHHHHH
Confidence            3445566777777777641          24556788899999999988765443332      2234457778888888


Q ss_pred             -CChhhHHHHHhcCcHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhhc-----C
Q 015851          145 -VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLE-----F  218 (399)
Q Consensus       145 -~~~~~~~~i~~~~~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~-----~  218 (399)
                       ..++....+++.|.+.-|+.-+.......      .-..++.-+|.-+.+.+...+..+....++..+++-+.     +
T Consensus       211 ~~r~~~~~~~~e~~ll~WLL~rl~~k~~f~------aNk~YasEiLaillq~s~e~~~~~~~l~GiD~lL~~la~yk~~d  284 (536)
T KOG2734|consen  211 EVRPAICTEIVEQGLLSWLLKRLKGKAAFD------ANKQYASEILAILLQNSDENRKLLGPLDGIDVLLRQLAVYKRHD  284 (536)
T ss_pred             hccHHHHHHHHHhhHHHHHHHHHhcccCcc------hhHHHHHHHHHHHhccCchhhhhhcCcccHHHHHhhcchhhccC
Confidence             78889999999888888888665443322      45567778888888766666666667788888877653     2


Q ss_pred             ---C-CHHHHHHHHHHHHHhhcCChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCh--hHHHHHHHCCC
Q 015851          219 ---T-DTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSP--NIKKEVLAAGA  292 (399)
Q Consensus       219 ---~-~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~--~~~~~~~~~~~  292 (399)
                         . ..+..++...+|+.+.. .+.++..+....+++.+.-+++. ....+..++.+|-.+..+.+  .+...+++..+
T Consensus       285 P~~~~E~EmmeNLFdcLCs~lm-~~~nr~~Fl~~EGlqLm~Lmlr~-Kk~sr~SalkvLd~am~g~~gt~~C~kfVe~lG  362 (536)
T KOG2734|consen  285 PATVDEEEMMENLFDCLCSLLM-APANRERFLKGEGLQLMNLMLRE-KKVSRGSALKVLDHAMFGPEGTPNCNKFVEILG  362 (536)
T ss_pred             CCCcCHHHHHHHHHHHHHHHhc-ChhhhhhhhccccHHHHHHHHHH-HHHhhhhHHHHHHHHHhCCCchHHHHHHHHHHh
Confidence               1 24677888889998888 79999999999999977777766 56778899999999887755  56677788888


Q ss_pred             cHHHHHhhc-CCC---------hHHHHHHHHHHHHhhc
Q 015851          293 LQPVIGLLS-SCC---------SESQREAALLLGQFAA  320 (399)
Q Consensus       293 l~~L~~lL~-~~~---------~~v~~~a~~~L~~l~~  320 (399)
                      +..++.+.- .+.         .+.-++.+..|+.+..
T Consensus       363 LrtiF~~FMk~p~k~~~~~~t~~e~eEhv~siiaSl~~  400 (536)
T KOG2734|consen  363 LRTIFPLFMKTPLKRKKRKISADEHEEHVCSILASLLR  400 (536)
T ss_pred             HHHHHHHHhhCccchhcccCcHHHHHHHHHHHHHHHHH
Confidence            877776643 222         2445666666666654

>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B

Probab=97.89  E-value=3.1e-05  Score=50.34  Aligned_cols=55  Identities=36%  Similarity=0.391  Sum_probs=45.8

Q ss_pred             HHHHHHHHHHHHHhhcCChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHh
Q 015851          221 TKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNL  276 (399)
Q Consensus       221 ~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l  276 (399)
                      +.+|..|+++|++++...++.... ....+++.|+.+|.++++.||..|+++|++|
T Consensus         1 p~vR~~A~~aLg~l~~~~~~~~~~-~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l   55 (55)
T PF13513_consen    1 PRVRRAAAWALGRLAEGCPELLQP-YLPELLPALIPLLQDDDDSVRAAAAWALGNL   55 (55)
T ss_dssp             HHHHHHHHHHHHCTTTTTHHHHHH-HHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred             CHHHHHHHHHHhhHhcccHHHHHH-HHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence            578999999999998755555444 3345899999999999999999999999975

...

>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []

Probab=97.89  E-value=0.00075  Score=57.76  Aligned_cols=205  Identities=12%  Similarity=0.150  Sum_probs=135.8

Q ss_pred             hHHHHHHHHHHHHHHcCC-hhHHHHHHhC-CChHHHHhcccCCCCcccccCCCcchH---HHHHHHHHHHHHhcCChhhH
Q 015851           76 DRAAAKRATHVLAELAKN-EEVVNWIVEG-GAVPALVKHLQAPPTSEADRNLKPFEH---EVEKGSAFALGLLAVKPEHQ  150 (399)
Q Consensus        76 ~~~~~~~a~~~L~~l~~~-~~~~~~~~~~-g~l~~L~~lL~~~~~~~~~~~~~~~~~---~~~~~a~~~L~~l~~~~~~~  150 (399)
                      +++.|+.|+..|+.--+. ++..-.+... |.+..|++=+-+..+...   +....+   .-..+|+..|..+|.+|+.|
T Consensus         8 ~~~~Re~Al~eLsk~r~~~~~La~~LW~s~G~i~~LLqEIisiYp~l~---~~~Lt~~~snRVcnaLaLlQ~vAshpetr   84 (262)
T PF04078_consen    8 NPETRENALLELSKKRESFPDLAPLLWHSFGTIAALLQEIISIYPALS---PPNLTARQSNRVCNALALLQCVASHPETR   84 (262)
T ss_dssp             SHHHHHHHHHHHHHTCCC-TTHHHHHHTSTTHHHHHHHHHHGGGGGTT---TT---HHHHHHHHHHHHHHHHHHH-TTTH
T ss_pred             CcchHHHHHHHHHHhhhcccchhHHHHcCCChHHHHHHHHHHHcccCC---CcccCHHHHHHHHHHHHHHHHHHcChHHH
Confidence            456688999988887765 6666566655 666666543322222111   011111   33466777777888999999


Q ss_pred             HHHHhcCcHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhh-cCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHH
Q 015851          151 QLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAH-ENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAG  229 (399)
Q Consensus       151 ~~i~~~~~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~-~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~  229 (399)
                      ..+.++.+.-.|.-+|+..+.....+   .++-.++++++.+.. +++++-..+...+.+|..+..|+.+++-.+..|..
T Consensus        85 ~~Fl~a~iplyLyPfL~tt~k~r~~E---~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcLr~me~GselSKtvAtf  161 (262)
T PF04078_consen   85 MPFLKAHIPLYLYPFLNTTSKTRPFE---YLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCLRIMEFGSELSKTVATF  161 (262)
T ss_dssp             HHHHHTTGGGGGHHHHH----SHHHH---HHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHHHHHHHS-HHHHHHHHH
T ss_pred             HHHHHcCchhhehhhhhccccccccc---hhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHHHHHHhccHHHHHHHHH
Confidence            99999998888888887665543322   678889999999996 34456666778899999999999999999999999


Q ss_pred             HHHHhhcCChhhHHHHHhc--------CCHHHHH-HhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHH
Q 015851          230 ALRTLAFKNDENKNQIVEC--------NALPTLI-LMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVL  288 (399)
Q Consensus       230 ~L~~L~~~~~~~~~~~~~~--------~~~~~L~-~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~  288 (399)
                      .+..+.. ++.+-..+++.        .++..++ .+...+++.+.++.+++-..++.+ +..+..+.
T Consensus       162 IlqKIL~-dd~GL~yiC~t~eRf~av~~vL~~mV~~l~~~pS~RLLKhIIrCYlRLsdn-prar~aL~  227 (262)
T PF04078_consen  162 ILQKILL-DDVGLNYICQTAERFFAVAMVLNKMVEQLVKQPSPRLLKHIIRCYLRLSDN-PRAREALR  227 (262)
T ss_dssp             HHHHHHH-SHHHHHHHTSSHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHTTS-TTHHHHHH
T ss_pred             HHHHHHc-chhHHHHHhcCHHHHHHHHHHHHHHHHHHccCCChhHHHHHHHHHHHHccC-HHHHHHHH
Confidence            9999997 56666555441        1222222 334567889999999999999864 55555443

Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.

>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]

Probab=97.87  E-value=0.00039  Score=65.69  Aligned_cols=166  Identities=14%  Similarity=0.117  Sum_probs=114.2

Q ss_pred             ChHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhhH---HHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHH
Q 015851          208 GIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENK---NQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIK  284 (399)
Q Consensus       208 ~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~---~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~  284 (399)
                      .++.++.+|++..+.+|..|+...+.|+. --.++   +.+...|  -.|...+....+++.-..+.++..|.....-..
T Consensus       605 ivStiL~~L~~k~p~vR~~aadl~~sl~~-vlk~c~e~~~l~klg--~iLyE~lge~ypEvLgsil~Ai~~I~sv~~~~~  681 (975)
T COG5181         605 IVSTILKLLRSKPPDVRIRAADLMGSLAK-VLKACGETKELAKLG--NILYENLGEDYPEVLGSILKAICSIYSVHRFRS  681 (975)
T ss_pred             HHHHHHHHhcCCCccHHHHHHHHHHHHHH-HHHhcchHHHHHHHh--HHHHHhcCcccHHHHHHHHHHHHHHhhhhcccc
Confidence            45677888999999999999998888875 22222   1222232  246677778899999888888888863211110


Q ss_pred             HHHHHCCCcHHHHHhhcCCChHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhccC
Q 015851          285 KEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQVI  364 (399)
Q Consensus       285 ~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~  364 (399)
                      -..-..|++|.|..+|++....+..+....++.++..+++....---..+.=-|+.+|++.+.++|++|...++.+++.-
T Consensus       682 mqpPi~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEWMRIcfeLvd~Lks~nKeiRR~A~~tfG~Is~ai  761 (975)
T COG5181         682 MQPPISGILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIGVREWMRICFELVDSLKSWNKEIRRNATETFGCISRAI  761 (975)
T ss_pred             cCCchhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhhhHHhhc
Confidence            11113689999999999999999999999999998776652211111223345778888889999999999999999876


Q ss_pred             CCC-cchhHHHHH
Q 015851          365 TVS-VLPAILIFI  376 (399)
Q Consensus       365 ~~~-~~~~~~~~~  376 (399)
                      .+. ++..+++-+
T Consensus       762 GPqdvL~~LlnnL  774 (975)
T COG5181         762 GPQDVLDILLNNL  774 (975)
T ss_pred             CHHHHHHHHHhcc
Confidence            642 344443333

>KOG2973 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.84  E-value=0.0092  Score=52.10  Aligned_cols=243  Identities=16%  Similarity=0.189  Sum_probs=146.5

Q ss_pred             HHHhHhhhhhhHHHHhhhhhcchhhhHHHHHHHHHHHHHHcCChhHHHHHHhCCChHHHHhcccCCCCcccccCCCcchH
Q 015851           51 ARQALLSEVSAQVNVLNTTFSWLEADRAAAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEH  130 (399)
Q Consensus        51 ~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~  130 (399)
                      +.+.........++.+..++...+  +  -..|+.+|.|++.++..++.+.+. .+..++..+.++..            
T Consensus        34 ~~~~~~~~~~~~lk~l~qL~~~~~--~--~~~a~~alVnlsq~~~l~~~ll~~-~~k~l~~~~~~p~~------------   96 (353)
T KOG2973|consen   34 GLQSLSKYSEALLKDLTQLLKDLD--P--AEPAATALVNLSQKEELRKKLLQD-LLKVLMDMLTDPQS------------   96 (353)
T ss_pred             chhhhccchhhhHHHHHHHccCcc--c--ccHHHHHHHHHHhhHHHHHHHHHH-HHHHHHHHhcCccc------------
Confidence            344445555666776776664222  2  447899999999999999988877 77777777776644            


Q ss_pred             HHHHHHHHHHHHhcCChhhHHHHHh--c----CcHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhhcCchhHHHHH
Q 015851          131 EVEKGSAFALGLLAVKPEHQQLIVD--N----GALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVR  204 (399)
Q Consensus       131 ~~~~~a~~~L~~l~~~~~~~~~i~~--~----~~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~  204 (399)
                      .+-...+..|.|++..+.....+..  .    .++..++..+.+......     .-..+.+.++.||++ .+..+..+.
T Consensus        97 ~lad~~cmlL~NLs~~~~~~~~ll~~~~~~~~~~lm~l~~~~~d~~~n~~-----a~f~ylA~vf~nls~-~~~gR~l~~  170 (353)
T KOG2973|consen   97 PLADLICMLLSNLSRDDDEVAALLTNLTEKKDSGLMRLARAFCDKSYNAY-----AEFHYLAPVFANLSQ-FEAGRKLLL  170 (353)
T ss_pred             chHHHHHHHHHHhccCchHHHHHHHhcccccccchHHHHHHHhCcccccc-----cchhHHHHHHHHHhh-hhhhhhHhc
Confidence            3445889999999965554433321  1    234444444433322211     233567888999995 444555555


Q ss_pred             hcCCh--HHHHHhhcCCCHHH-HHHHHHHHHHhhcCChhhHHHHHhc--CCHHHHHH---------------------hh
Q 015851          205 MEGGI--PPLVELLEFTDTKV-QRAAAGALRTLAFKNDENKNQIVEC--NALPTLIL---------------------ML  258 (399)
Q Consensus       205 ~~~~i--~~L~~ll~~~~~~v-~~~a~~~L~~L~~~~~~~~~~~~~~--~~~~~L~~---------------------ll  258 (399)
                      ....+  ..+..+ .+.+..+ +...+++|.|.+. ...+...++..  ..+|.++.                     ++
T Consensus       171 ~~k~~p~~kll~f-t~~~s~vRr~GvagtlkN~cF-d~~~h~~lL~e~~~lLp~iLlPlagpee~sEEdm~~LP~eLQyL  248 (353)
T KOG2973|consen  171 EPKRFPDQKLLPF-TSEDSQVRRGGVAGTLKNCCF-DAKLHEVLLDESINLLPAILLPLAGPEELSEEDMAKLPVELQYL  248 (353)
T ss_pred             chhhhhHhhhhcc-cccchhhhccchHHHHHhhhc-cchhHHHHhcchHHHHHHHHhhcCCccccCHHHHhcCCHhhhcC
Confidence            44433  233333 3344445 4567899999998 44555555542  23343322                     22


Q ss_pred             c-----CCCHHHHHHHHHHHHHhhcCChhHHHHHHHCCCcHHHHHhhcC-CChHHHHHHHHHHHHhh
Q 015851          259 R-----SEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSS-CCSESQREAALLLGQFA  319 (399)
Q Consensus       259 ~-----~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~-~~~~v~~~a~~~L~~l~  319 (399)
                      .     .+++.++..-+.+|.-|+.. ..++..+.+.|+-+.+-.+=.. .++++++.+-.....+.
T Consensus       249 p~dKeRepdpdIrk~llEai~lLcaT-~~GRe~lR~kgvYpilRElhk~e~ded~~~ace~vvq~Lv  314 (353)
T KOG2973|consen  249 PEDKEREPDPDIRKMLLEALLLLCAT-RAGREVLRSKGVYPILRELHKWEEDEDIREACEQVVQMLV  314 (353)
T ss_pred             CccccCCCChHHHHHHHHHHHHHHhh-hHhHHHHHhcCchHHHHHHhcCCCcHHHHHHHHHHHHHHH
Confidence            1     24678999999999999965 5667777777766665555443 44455544444444444

>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]

Probab=97.84  E-value=0.0015  Score=64.78  Aligned_cols=174  Identities=17%  Similarity=0.173  Sum_probs=116.3

Q ss_pred             HHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhh-HHHHHh-----------
Q 015851          180 SVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDEN-KNQIVE-----------  247 (399)
Q Consensus       180 ~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~-~~~~~~-----------  247 (399)
                      .++..++-.|+.+-++.+..    ...+....+++.+.+++++++.+|..+|++++.++-.. ...+++           
T Consensus       834 ~ikvfa~LslGElgr~~~~s----~~~e~~~~iieaf~sp~edvksAAs~ALGsl~vgnl~~yLpfil~qi~sqpk~QyL  909 (1233)
T KOG1824|consen  834 SIKVFALLSLGELGRRKDLS----PQNELKDTIIEAFNSPSEDVKSAASYALGSLAVGNLPKYLPFILEQIESQPKRQYL  909 (1233)
T ss_pred             hHHHHHHhhhhhhccCCCCC----cchhhHHHHHHHcCCChHHHHHHHHHHhhhhhcCchHhHHHHHHHHHhcchHhHHH
Confidence            67777777777777644321    12344557889999999999999999999999854331 111111           


Q ss_pred             -----------c------CCHHHHHHh----hcCCCHHHHHHHHHHHHHhhcCChhHHHHHHHCCCcHHHHHhhcCCChH
Q 015851          248 -----------C------NALPTLILM----LRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSE  306 (399)
Q Consensus       248 -----------~------~~~~~L~~l----l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~  306 (399)
                                 .      ..++.+..+    .....+..|.-.+.|||.++..+++.        .+|.|-..+.++.+.
T Consensus       910 LLhSlkevi~~~svd~~~~~v~~IW~lL~k~cE~~eegtR~vvAECLGkL~l~epes--------LlpkL~~~~~S~a~~  981 (1233)
T KOG1824|consen  910 LLHSLKEVIVSASVDGLKPYVEKIWALLFKHCECAEEGTRNVVAECLGKLVLIEPES--------LLPKLKLLLRSEASN  981 (1233)
T ss_pred             HHHHHHHHHHHhccchhhhhHHHHHHHHHHhcccchhhhHHHHHHHhhhHHhCChHH--------HHHHHHHHhcCCCcc
Confidence                       0      011112222    22234456666677777776554443        578888888888888


Q ss_pred             HHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhccCCC
Q 015851          307 SQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQVITV  366 (399)
Q Consensus       307 v~~~a~~~L~~l~~~~~~~~~~l~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~  366 (399)
                      .+.-+..++-......+.-.+.+.. ..+..++.+++++|.+||+.|..++...+.+-|+
T Consensus       982 ~rs~vvsavKfsisd~p~~id~~lk-~~ig~fl~~~~dpDl~VrrvaLvv~nSaahNKps 1040 (1233)
T KOG1824|consen  982 TRSSVVSAVKFSISDQPQPIDPLLK-QQIGDFLKLLRDPDLEVRRVALVVLNSAAHNKPS 1040 (1233)
T ss_pred             hhhhhhheeeeeecCCCCccCHHHH-HHHHHHHHHHhCCchhHHHHHHHHHHHHHccCHh
Confidence            8888777776655443433333332 2477888999999999999999999999988886

>COG1413 FOG: HEAT repeat [Energy production and conversion]

Probab=97.84  E-value=0.0065  Score=55.97  Aligned_cols=186  Identities=31%  Similarity=0.367  Sum_probs=132.1

Q ss_pred             hHHHHhhhhhcchhhhHHHHHHHHHHHHHHcCChhHHHHHHhCCChHHHHhcccCCCCcccccCCCcchHHHHHHHHHHH
Q 015851           61 AQVNVLNTTFSWLEADRAAAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFAL  140 (399)
Q Consensus        61 ~~~~~L~~~l~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~~~~~a~~~L  140 (399)
                      ..++.+...+.  +.+..+|..|.+.+..+..          .-.++.+..++.+.+.            .+|..|..+|
T Consensus        43 ~~~~~~~~~l~--~~~~~vr~~aa~~l~~~~~----------~~av~~l~~~l~d~~~------------~vr~~a~~aL   98 (335)
T COG1413          43 EAADELLKLLE--DEDLLVRLSAAVALGELGS----------EEAVPLLRELLSDEDP------------RVRDAAADAL   98 (335)
T ss_pred             hhHHHHHHHHc--CCCHHHHHHHHHHHhhhch----------HHHHHHHHHHhcCCCH------------HHHHHHHHHH
Confidence            34555555553  3367778888888554432          2357888889988776            7888999988


Q ss_pred             HHhcCChhhHHHHHhcCcHHHHHHHHhc-cccCccccccHHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhhcCC
Q 015851          141 GLLAVKPEHQQLIVDNGALSHLVNLLKR-HMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFT  219 (399)
Q Consensus       141 ~~l~~~~~~~~~i~~~~~i~~L~~~L~~-~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~  219 (399)
                      +.+-..          ..++.++.++.. .+.        .++..+.++|..+-..           ..+..++..+.+.
T Consensus        99 g~~~~~----------~a~~~li~~l~~d~~~--------~vR~~aa~aL~~~~~~-----------~a~~~l~~~l~~~  149 (335)
T COG1413          99 GELGDP----------EAVPPLVELLENDENE--------GVRAAAARALGKLGDE-----------RALDPLLEALQDE  149 (335)
T ss_pred             HccCCh----------hHHHHHHHHHHcCCcH--------hHHHHHHHHHHhcCch-----------hhhHHHHHHhccc
Confidence            887632          268889999986 333        7888899998887732           2255666676665


Q ss_pred             CH------------HHHHHHHHHHHHhhcCChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHH
Q 015851          220 DT------------KVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEV  287 (399)
Q Consensus       220 ~~------------~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~  287 (399)
                      ..            .++..+...++.+-.           ...++.+...+.+.+..++..|..+|+.+....       
T Consensus       150 ~~~~a~~~~~~~~~~~r~~a~~~l~~~~~-----------~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~-------  211 (335)
T COG1413         150 DSGSAAAALDAALLDVRAAAAEALGELGD-----------PEAIPLLIELLEDEDADVRRAAASALGQLGSEN-------  211 (335)
T ss_pred             hhhhhhhhccchHHHHHHHHHHHHHHcCC-----------hhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch-------
Confidence            52            345555555554443           246788899999999999999999999997542       


Q ss_pred             HHCCCcHHHHHhhcCCChHHHHHHHHHHHHhh
Q 015851          288 LAAGALQPVIGLLSSCCSESQREAALLLGQFA  319 (399)
Q Consensus       288 ~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~  319 (399)
                        ..+...+...+...+..++..++.+|+.+-
T Consensus       212 --~~~~~~l~~~~~~~~~~vr~~~~~~l~~~~  241 (335)
T COG1413         212 --VEAADLLVKALSDESLEVRKAALLALGEIG  241 (335)
T ss_pred             --hhHHHHHHHHhcCCCHHHHHHHHHHhcccC
Confidence              335677888888889999998888888764

>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]

Probab=97.83  E-value=0.0036  Score=52.73  Aligned_cols=182  Identities=14%  Similarity=0.170  Sum_probs=124.6

Q ss_pred             HHHHHHHHHHHHcCChhHHHHHHhCCChHHHHhcccCCCCcccccCCCcchHHHHHHHHHHHHHhc--CChhhHHHHHhc
Q 015851           79 AAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA--VKPEHQQLIVDN  156 (399)
Q Consensus        79 ~~~~a~~~L~~l~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~~~~~a~~~L~~l~--~~~~~~~~i~~~  156 (399)
                      -...|+..|-.++++|+.+..|.+..+--.|-.+|...+..      .+|+ .+|..++.+++.|.  ++.+.-..+...
T Consensus        95 RVcnaL~LlQcvASHpdTr~~FL~A~iPlylYpfL~Tt~~~------r~fE-yLRLtsLGVIgaLvk~dd~eVi~fLl~T  167 (293)
T KOG3036|consen   95 RVCNALALLQCVASHPDTRRAFLRAHIPLYLYPFLNTTSKS------RPFE-YLRLTSLGVIGALVKNDDQEVIRFLLTT  167 (293)
T ss_pred             hHHHHHHHHHHHhcCcchHHHHHHccChhhhHHhhhccccC------CchH-HHhHHHHHHHHHHHhcCcHHHHHHHHHh
Confidence            35577888888899999999999999888888888765442      3333 78999999999999  556667778889


Q ss_pred             CcHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhhcCchhHHHHHhc-------CCh-HHHHHhhcCCCHHHHHHHH
Q 015851          157 GALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRME-------GGI-PPLVELLEFTDTKVQRAAA  228 (399)
Q Consensus       157 ~~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~-------~~i-~~L~~ll~~~~~~v~~~a~  228 (399)
                      +++|..++.+..+++        .-+..+..++..+..++..........       ..+ ..+..+.+.+++.+..++.
T Consensus       168 eIVPlCLrime~GSe--------lSKtvA~fIlqKIlldD~GL~YiCqt~eRF~av~~~L~kmv~~l~~~ps~RllKhvi  239 (293)
T KOG3036|consen  168 EIVPLCLRIMESGSE--------LSKTVATFILQKILLDDVGLYYICQTAERFSAVALVLGKMVFQLVSMPSPRLLKHVI  239 (293)
T ss_pred             hhHHHHHHHHhcccH--------HHHHHHHHHHHHHhhccccHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHH
Confidence            999999999998886        555667777777775554433221111       122 2334455668899999999


Q ss_pred             HHHHHhhcCChhhHHHHHhc--CCH-H-HHHHhhcCCCHHHHHHHHHHHHHhh
Q 015851          229 GALRTLAFKNDENKNQIVEC--NAL-P-TLILMLRSEDSAIHYEAVGVIGNLV  277 (399)
Q Consensus       229 ~~L~~L~~~~~~~~~~~~~~--~~~-~-~L~~ll~~~~~~v~~~a~~~L~~l~  277 (399)
                      ++..+|+. ++..+..+...  ..+ . .+..++ .+|++.+..-...+.|++
T Consensus       240 RcYlrLsd-nprar~aL~~clPd~Lrd~tfs~~l-~~D~~~k~~l~~ll~~l~  290 (293)
T KOG3036|consen  240 RCYLRLSD-NPRARAALRSCLPDQLRDGTFSLLL-KDDPETKQWLQQLLKNLC  290 (293)
T ss_pred             HHHHHhcC-CHHHHHHHHhhCcchhccchHHHHH-hcChhHHHHHHHHHHHhc
Confidence            99999997 67666555431  111 1 122223 235566666666666664

>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]

Probab=97.83  E-value=0.011  Score=49.97  Aligned_cols=204  Identities=13%  Similarity=0.118  Sum_probs=132.8

Q ss_pred             HHHHHHHHHHHHHcCC-hhHHHHHHhC-CChHHHHhcccCCCCcccccCCCcchHHHHHHHHHHHHHhcCChhhHHHHHh
Q 015851           78 AAAKRATHVLAELAKN-EEVVNWIVEG-GAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIVD  155 (399)
Q Consensus        78 ~~~~~a~~~L~~l~~~-~~~~~~~~~~-g~l~~L~~lL~~~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~  155 (399)
                      ..++.|+.-|+.--.. ++....+... |.+..+++=.-...+........+...--..+|...|.-++.+|+.+..+.+
T Consensus        39 p~rE~aL~ELskkre~~~dlA~~lW~s~g~~~~LLqEivaiYp~l~p~~l~~~qsnRVcnaL~LlQcvASHpdTr~~FL~  118 (293)
T KOG3036|consen   39 PTREMALLELSKKREPFPDLAPMLWHSFGTMVALLQEIVAIYPSLSPPTLTPAQSNRVCNALALLQCVASHPDTRRAFLR  118 (293)
T ss_pred             chHHHHHHHHHHhccCCccccHHHHHhcchHHHHHHHHHhcccccCCCCCCccccchHHHHHHHHHHHhcCcchHHHHHH
Confidence            3556666666665552 5555555544 4444444322111111110000011112345777778888899999999999


Q ss_pred             cCcHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhhcC-chhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHh
Q 015851          156 NGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHEN-SSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTL  234 (399)
Q Consensus       156 ~~~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L  234 (399)
                      +.+--++-.+|.....+...+   -++..++++|+.|...+ .++-..+...+++|.+++.+..+++..+..|..++..+
T Consensus       119 A~iPlylYpfL~Tt~~~r~fE---yLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPlCLrime~GSelSKtvA~fIlqKI  195 (293)
T KOG3036|consen  119 AHIPLYLYPFLNTTSKSRPFE---YLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPLCLRIMESGSELSKTVATFILQKI  195 (293)
T ss_pred             ccChhhhHHhhhccccCCchH---HHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence            987777777887665544333   67888999999999744 34555667789999999999999999999999999999


Q ss_pred             hcCChhhHHHHHhc--------CCHH-HHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHH
Q 015851          235 AFKNDENKNQIVEC--------NALP-TLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKE  286 (399)
Q Consensus       235 ~~~~~~~~~~~~~~--------~~~~-~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~  286 (399)
                      .. ++.+-..+++.        ..+. .+.++.+.+++.+..+++++..+++.. +..+..
T Consensus       196 ll-dD~GL~YiCqt~eRF~av~~~L~kmv~~l~~~ps~RllKhviRcYlrLsdn-prar~a  254 (293)
T KOG3036|consen  196 LL-DDVGLYYICQTAERFSAVALVLGKMVFQLVSMPSPRLLKHVIRCYLRLSDN-PRARAA  254 (293)
T ss_pred             hh-ccccHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCC-HHHHHH
Confidence            87 56655555441        1122 233445568889999999999999853 544433

>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B

Probab=97.80  E-value=4e-05  Score=49.79  Aligned_cols=55  Identities=31%  Similarity=0.381  Sum_probs=45.3

Q ss_pred             hHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHh
Q 015851          305 SESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRL  360 (399)
Q Consensus       305 ~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l  360 (399)
                      +.+|..|+++|++++...++.... ....+++.|..++.++++.||..|+++|++|
T Consensus         1 p~vR~~A~~aLg~l~~~~~~~~~~-~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l   55 (55)
T PF13513_consen    1 PRVRRAAAWALGRLAEGCPELLQP-YLPELLPALIPLLQDDDDSVRAAAAWALGNL   55 (55)
T ss_dssp             HHHHHHHHHHHHCTTTTTHHHHHH-HHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred             CHHHHHHHHHHhhHhcccHHHHHH-HHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence            468999999999988665555444 4455799999999999999999999999875

...

>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10

Probab=97.80  E-value=0.00017  Score=52.69  Aligned_cols=66  Identities=29%  Similarity=0.328  Sum_probs=58.8

Q ss_pred             HHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhhc--CCCHHHHHHHHHHHHHhhcCChhhHHHHHh
Q 015851          182 IRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLE--FTDTKVQRAAAGALRTLAFKNDENKNQIVE  247 (399)
Q Consensus       182 ~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~--~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~  247 (399)
                      +...+.+|+|++..++..+..+...+++|.++....  ..+|-+++.|..++.||+.++++++..+.+
T Consensus         3 K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~eNQ~~I~~   70 (102)
T PF09759_consen    3 KRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPENQEFIAQ   70 (102)
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHHHHHHHHh
Confidence            456788999999999999999999999999999864  456999999999999999999999887766

Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].

>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]

Probab=97.79  E-value=0.0084  Score=51.19  Aligned_cols=202  Identities=29%  Similarity=0.296  Sum_probs=124.9

Q ss_pred             hCCChHHHHhcccCCCCcccccCCCcchHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHHHhccccCccccccHHH
Q 015851          102 EGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSV  181 (399)
Q Consensus       102 ~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~~~i~~L~~~L~~~~~~~~~~~~~~~  181 (399)
                      ....++.|+..|.+.+.          .|.+|..|..+|+.+. .+.         .++.+-++.++.-.        ++
T Consensus        65 ~~~Av~~l~~vl~desq----------~pmvRhEAaealga~~-~~~---------~~~~l~k~~~dp~~--------~v  116 (289)
T KOG0567|consen   65 DEDAVPVLVEVLLDESQ----------EPMVRHEAAEALGAIG-DPE---------SLEILTKYIKDPCK--------EV  116 (289)
T ss_pred             cchhhHHHHHHhccccc----------chHHHHHHHHHHHhhc-chh---------hHHHHHHHhcCCcc--------cc
Confidence            44578888888776655          4588899999999887 322         33444444432222        56


Q ss_pred             HHHHHHHHHHHhhcCchhH-----HHH-------HhcCChHHHHHhhcCCC-HH-HHHHHHHHHHHhhcCChhhHHHHHh
Q 015851          182 IRRAADAITNLAHENSSIK-----TRV-------RMEGGIPPLVELLEFTD-TK-VQRAAAGALRTLAFKNDENKNQIVE  247 (399)
Q Consensus       182 ~~~a~~~L~~l~~~~~~~~-----~~~-------~~~~~i~~L~~ll~~~~-~~-v~~~a~~~L~~L~~~~~~~~~~~~~  247 (399)
                      .+.+..++..+-..+...+     ...       ...+-+..+-..+.+.+ +. -|..|...|.|+-.  ++       
T Consensus       117 ~ETc~lAi~rle~~~~~~~~~~~~p~~SvdPa~p~~~ssv~~lr~~lld~t~~l~~Ry~amF~LRn~g~--Ee-------  187 (289)
T KOG0567|consen  117 RETCELAIKRLEWKDIIDKIANSSPYISVDPAPPANLSSVHELRAELLDETKPLFERYRAMFYLRNIGT--EE-------  187 (289)
T ss_pred             chHHHHHHHHHHHhhccccccccCccccCCCCCccccccHHHHHHHHHhcchhHHHHHhhhhHhhccCc--HH-------
Confidence            6655566655542111100     000       01122334444444433 22 24455555555542  22       


Q ss_pred             cCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHHCCCcHHHHHhhc--CCChHHHHHHHHHHHHhhccChhh
Q 015851          248 CNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLS--SCCSESQREAALLLGQFAATDSDC  325 (399)
Q Consensus       248 ~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~--~~~~~v~~~a~~~L~~l~~~~~~~  325 (399)
                        .+-.|+.-+..++.-.|..++.+++.|-  ++.         .++.|.+.|.  ..++-+|.+|+.+|+.++  ++++
T Consensus       188 --aI~al~~~l~~~SalfrhEvAfVfGQl~--s~~---------ai~~L~k~L~d~~E~pMVRhEaAeALGaIa--~e~~  252 (289)
T KOG0567|consen  188 --AINALIDGLADDSALFRHEVAFVFGQLQ--SPA---------AIPSLIKVLLDETEHPMVRHEAAEALGAIA--DEDC  252 (289)
T ss_pred             --HHHHHHHhcccchHHHHHHHHHHHhhcc--chh---------hhHHHHHHHHhhhcchHHHHHHHHHHHhhc--CHHH
Confidence              3555666666777889999999999984  233         4777777775  467789999999999987  3444


Q ss_pred             HHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhccC
Q 015851          326 KVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQVI  364 (399)
Q Consensus       326 ~~~l~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~  364 (399)
                               ++.|.+.+.+.++-|++.+..+|..+-...
T Consensus       253 ---------~~vL~e~~~D~~~vv~esc~valdm~eyen  282 (289)
T KOG0567|consen  253 ---------VEVLKEYLGDEERVVRESCEVALDMLEYEN  282 (289)
T ss_pred             ---------HHHHHHHcCCcHHHHHHHHHHHHHHHHHhc
Confidence                     567778888888888888888887766544

>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.77  E-value=0.0051  Score=60.08  Aligned_cols=254  Identities=19%  Similarity=0.194  Sum_probs=145.5

Q ss_pred             hhhhHHHHHHHHHHHHHHcC-ChhHHHHHHhCCChHHHHhcccCCCCcccccCCCcchHHHHHHHHHHHHHhcCChhhHH
Q 015851           73 LEADRAAAKRATHVLAELAK-NEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQ  151 (399)
Q Consensus        73 ~~~~~~~~~~a~~~L~~l~~-~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~  151 (399)
                      .|..+.+|..|+.++-++-+ +++....+     +..+-.||.+..+.+            .-.|+.++..+|  |+.-+
T Consensus       153 ~D~s~yVRk~AA~AIpKLYsLd~e~k~qL-----~e~I~~LLaD~splV------------vgsAv~AF~evC--Perld  213 (968)
T KOG1060|consen  153 TDPSPYVRKTAAHAIPKLYSLDPEQKDQL-----EEVIKKLLADRSPLV------------VGSAVMAFEEVC--PERLD  213 (968)
T ss_pred             cCCcHHHHHHHHHhhHHHhcCChhhHHHH-----HHHHHHHhcCCCCcc------------hhHHHHHHHHhc--hhHHH
Confidence            45677899999999999988 77776654     455667788777743            347788887777  33333


Q ss_pred             HHHhcCcHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhhc---CchhH---------------------HHHHhcC
Q 015851          152 LIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHE---NSSIK---------------------TRVRMEG  207 (399)
Q Consensus       152 ~i~~~~~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~---~~~~~---------------------~~~~~~~  207 (399)
                      .+..  -...++++|.+-++=        =+......|...|.+   .|..-                     .......
T Consensus       214 LIHk--nyrklC~ll~dvdeW--------gQvvlI~mL~RYAR~~l~~P~~~~~~~e~n~~~~~~~~~~~~~~~P~~~d~  283 (968)
T KOG1060|consen  214 LIHK--NYRKLCRLLPDVDEW--------GQVVLINMLTRYARHQLPDPTVVDSSLEDNGRSCNLKDKYNEIRTPYVNDP  283 (968)
T ss_pred             HhhH--HHHHHHhhccchhhh--------hHHHHHHHHHHHHHhcCCCccccccccccCcccccccccccccCCCcccCc
Confidence            3332  345566665543321        112233333333321   11000                     0000000


Q ss_pred             ChHHH----HHhhcCCCHHHHHHHHHHHHHhhcCChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhH
Q 015851          208 GIPPL----VELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNI  283 (399)
Q Consensus       208 ~i~~L----~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~  283 (399)
                      =+..|    -.++.+.++.+.-+++++++.++-.  ...     .+++..|+.+|.+ +.+++...+..+..++...+..
T Consensus       284 D~~lLL~stkpLl~S~n~sVVmA~aql~y~lAP~--~~~-----~~i~kaLvrLLrs-~~~vqyvvL~nIa~~s~~~~~l  355 (968)
T KOG1060|consen  284 DLKLLLQSTKPLLQSRNPSVVMAVAQLFYHLAPK--NQV-----TKIAKALVRLLRS-NREVQYVVLQNIATISIKRPTL  355 (968)
T ss_pred             cHHHHHHhccHHHhcCCcHHHHHHHhHHHhhCCH--HHH-----HHHHHHHHHHHhc-CCcchhhhHHHHHHHHhcchhh
Confidence            11222    2345677889999999999999852  211     2346677777765 3345555555555544322111


Q ss_pred             H-------------------------HHHHHCC----CcHHHHHhhcCCChHHHHHHHHHHHHhhccChhhHHHHHhcCC
Q 015851          284 K-------------------------KEVLAAG----ALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGA  334 (399)
Q Consensus       284 ~-------------------------~~~~~~~----~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~  334 (399)
                      .                         ..+.+.+    +++.+..++.+.+..+...++.+|+.++.....     +...+
T Consensus       356 F~P~lKsFfv~ssDp~~vk~lKleiLs~La~esni~~ILrE~q~YI~s~d~~faa~aV~AiGrCA~~~~s-----v~~tC  430 (968)
T KOG1060|consen  356 FEPHLKSFFVRSSDPTQVKILKLEILSNLANESNISEILRELQTYIKSSDRSFAAAAVKAIGRCASRIGS-----VTDTC  430 (968)
T ss_pred             hhhhhhceEeecCCHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHhhCc-----hhhHH
Confidence            0                         0111112    344445555666666777777888887743222     23346


Q ss_pred             HHHHHHhhCCCCHHHHHHHHHHHHHhhccCCCCc
Q 015851          335 VRPLIEMLQSPDVQLREMSAFALGRLAQVITVSV  368 (399)
Q Consensus       335 v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~  368 (399)
                      +..|+.++.+.+..|...++..+..|....+.+.
T Consensus       431 L~gLv~Llsshde~Vv~eaV~vIk~Llq~~p~~h  464 (968)
T KOG1060|consen  431 LNGLVQLLSSHDELVVAEAVVVIKRLLQKDPAEH  464 (968)
T ss_pred             HHHHHHHHhcccchhHHHHHHHHHHHHhhChHHH
Confidence            7788889988888899999999999988887653

>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []

Probab=97.76  E-value=0.0068  Score=57.81  Aligned_cols=243  Identities=17%  Similarity=0.190  Sum_probs=154.6

Q ss_pred             hhhhHHHHHHHHHHHHHHcCC-hhHHHHHHhCCChHHHHhcccCCCCcccccCCCcchHHHHHHHHHHHHHhc-CChhhH
Q 015851           73 LEADRAAAKRATHVLAELAKN-EEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA-VKPEHQ  150 (399)
Q Consensus        73 ~~~~~~~~~~a~~~L~~l~~~-~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~~~~~a~~~L~~l~-~~~~~~  150 (399)
                      .+.+..+..+|+.||+|+... +..|..+.+.|+.+.++..|+.....       ...+++.....++|.-++ ..+..+
T Consensus        42 ~~~~~~v~~EALKCL~N~lf~s~~aR~~~~~~~~~~~l~~~Lk~~~~~-------~~~~d~~Fl~~RLLFLlTa~~~~~~  114 (446)
T PF10165_consen   42 ESPDPDVSREALKCLCNALFLSPSARQIFVDLGLAEKLCERLKNYSDS-------SQPSDVEFLDSRLLFLLTALRPDDR  114 (446)
T ss_pred             cCCChHHHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHHHHHHccccc-------CCChhHHHHHHHHHHHHhcCChhHH
Confidence            455678899999999999985 99999999999999999999876321       012378888999998888 677777


Q ss_pred             HHHHh-cCcHHHHHHHHhcccc----Ccc-----ccccHHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhhc---
Q 015851          151 QLIVD-NGALSHLVNLLKRHMD----SNC-----SRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLE---  217 (399)
Q Consensus       151 ~~i~~-~~~i~~L~~~L~~~~~----~~~-----~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~---  217 (399)
                      ..+++ .+++..++..|...-.    ...     .....+....++.++.|+..+.+.... -.....++.++.++.   
T Consensus       115 ~~L~~e~~~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~EiLKllFNit~~~~~~~~-~~~~~~~~~l~~il~~~l  193 (446)
T PF10165_consen  115 KKLIEEHHGVELLTEALERHLKVKSKSSQEPTAPSPMDEEALSEILKLLFNITLHYPKSVP-EEFSPSIPHLVSILRRLL  193 (446)
T ss_pred             HHHHHHhhhHHHHHHHHHHHHhcccccccccCCCCcchHHHHHHHHHHHHHhhhccCcccc-hhhhHHHHHHHHHHHHHh
Confidence            66654 4778877777654311    110     112336778899999999865554322 011233333333321   


Q ss_pred             ----C--CCHHHHHHHHHHHHHhhcCChhh-------HH----HHHhcCCHHHHHHhhcC-----C---CHHHHHHHHHH
Q 015851          218 ----F--TDTKVQRAAAGALRTLAFKNDEN-------KN----QIVECNALPTLILMLRS-----E---DSAIHYEAVGV  272 (399)
Q Consensus       218 ----~--~~~~v~~~a~~~L~~L~~~~~~~-------~~----~~~~~~~~~~L~~ll~~-----~---~~~v~~~a~~~  272 (399)
                          .  +......++..+|.|+=....+.       ..    .......+..|+.+|+.     .   -.+...-.+.+
T Consensus       194 ~~~~~~~~l~~~~~~~in~L~nlpl~~~~~l~~~~~~~~~~~~~~~~~~~v~~Ll~~Ld~~l~~~~~~~l~~~l~PlL~l  273 (446)
T PF10165_consen  194 PPPPSSPPLDPPHSHAINALLNLPLECLDSLLSPKFQQSSLFPEGDNMDVVERLLDFLDKRLDKYEALKLDELLTPLLTL  273 (446)
T ss_pred             ccCCCCCcchhhHHHHHHHHhCCChHHHhhhhcccCCcccccCCCCChHHHHHHHHHHHHHHHhcCcccchhhHhhHHHH
Confidence                1  12456777777777763211111       00    01112345566666642     1   12455666777


Q ss_pred             HHHhhcCChhHHHHHHH----------------CCCcHHHHHhhcCCChHHHHHHHHHHHHhhccCh
Q 015851          273 IGNLVHSSPNIKKEVLA----------------AGALQPVIGLLSSCCSESQREAALLLGQFAATDS  323 (399)
Q Consensus       273 L~~l~~~~~~~~~~~~~----------------~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~  323 (399)
                      |.+++..+...++.+..                ...-..|++++.++.+.++..++..|..+|..+.
T Consensus       274 L~~~~~~~~~~Rk~lr~~lLP~~~Dr~~~~e~~~tL~~rLlrLmt~~~~~~k~~vaellf~Lc~~d~  340 (446)
T PF10165_consen  274 LTRLARAAREVRKYLRARLLPPDKDRKKPPEKGDTLRSRLLRLMTSPDPQLKDAVAELLFVLCKEDA  340 (446)
T ss_pred             HHHHHHhcHHHHHHHHHHhCCChhhcccCCCCCcchHHHHHHHhCCCCchHHHHHHHHHHHHHhhhH
Confidence            88887665555444432                1355689999998888999999999999985443

It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.

>TIGR02270 conserved hypothetical protein

Probab=97.76  E-value=0.001  Score=62.15  Aligned_cols=119  Identities=15%  Similarity=0.044  Sum_probs=79.2

Q ss_pred             hHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHH
Q 015851          209 IPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVL  288 (399)
Q Consensus       209 i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~  288 (399)
                      +..++..|.+.++.++..+..+|+.+-.           .+..+.|+.++.++++.++..++.+++...           
T Consensus        88 ~~~L~~~L~d~~~~vr~aaa~ALg~i~~-----------~~a~~~L~~~L~~~~p~vR~aal~al~~r~-----------  145 (410)
T TIGR02270        88 LRSVLAVLQAGPEGLCAGIQAALGWLGG-----------RQAEPWLEPLLAASEPPGRAIGLAALGAHR-----------  145 (410)
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHhcCCc-----------hHHHHHHHHHhcCCChHHHHHHHHHHHhhc-----------
Confidence            6677777777777788877777775443           134666777777777777777776666521           


Q ss_pred             HCCCcHHHHHhhcCCChHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhh
Q 015851          289 AAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLA  361 (399)
Q Consensus       289 ~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~  361 (399)
                       ....+.+..+|++.++.++..|+.+|+.+-.  .         ..++.|...+.+.++.||..|+.++..+.
T Consensus       146 -~~~~~~L~~~L~d~d~~Vra~A~raLG~l~~--~---------~a~~~L~~al~d~~~~VR~aA~~al~~lG  206 (410)
T TIGR02270       146 -HDPGPALEAALTHEDALVRAAALRALGELPR--R---------LSESTLRLYLRDSDPEVRFAALEAGLLAG  206 (410)
T ss_pred             -cChHHHHHHHhcCCCHHHHHHHHHHHHhhcc--c---------cchHHHHHHHcCCCHHHHHHHHHHHHHcC
Confidence             1124466777777777777777777777642  1         23445666677777777777777776664

Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.

>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing

Probab=97.74  E-value=0.014  Score=54.18  Aligned_cols=174  Identities=15%  Similarity=0.169  Sum_probs=118.7

Q ss_pred             HHHHHHHHHcCC-hhHHHHHHhCCChHHHHhcccCCCCcccc---------cC-------CC-----c-chHHHHHHHHH
Q 015851           82 RATHVLAELAKN-EEVVNWIVEGGAVPALVKHLQAPPTSEAD---------RN-------LK-----P-FEHEVEKGSAF  138 (399)
Q Consensus        82 ~a~~~L~~l~~~-~~~~~~~~~~g~l~~L~~lL~~~~~~~~~---------~~-------~~-----~-~~~~~~~~a~~  138 (399)
                      .|+..|-.+... +.....+.+.+|+..++..+..+-....+         ..       ..     + ....+.+..++
T Consensus         3 ~av~~ld~~~~~~~~a~~~f~~~~G~~~li~rl~~Ev~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~r~~llK~lLk   82 (379)
T PF06025_consen    3 RAVRFLDTFIDSSPDAFAAFRNLNGLDILIDRLQYEVDFALEENKNEEAGSGIPPEYKESSVDGYSISYQRQQLLKSLLK   82 (379)
T ss_pred             HHHHHHHHHHhccHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcccccCCCCCCCCCcccccccccccCHHHHHHHHHHHH
Confidence            355556555553 56666778888888888777533211111         00       00     0 11233445555


Q ss_pred             HHHHhcC-ChhhHHH---HHh-cCcHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHH
Q 015851          139 ALGLLAV-KPEHQQL---IVD-NGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLV  213 (399)
Q Consensus       139 ~L~~l~~-~~~~~~~---i~~-~~~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~  213 (399)
                      .+..+.. +......   +.+ ......|..+++....-..     .+...++.++..+...+|..-..+.+.|.++.++
T Consensus        83 ~l~~~~~~~~~~~~~lrnl~D~s~L~~sL~~Il~n~~~FG~-----~v~s~a~~ivs~~I~nePT~~~~l~e~Gl~~~~L  157 (379)
T PF06025_consen   83 FLSHAMQHSGGFGDRLRNLIDSSSLLSSLKHILENPEVFGP-----SVFSLAINIVSDFIHNEPTSFSILQEAGLIDAFL  157 (379)
T ss_pred             HHHHHhccCCCcccccccccchhhHHHHHHHHHhCccccch-----HHHHHHHHHHHHHHhcCCchhHHHHHcCChHHHH
Confidence            5555555 4444333   344 4456666667766554333     7888899999999988898888888899999999


Q ss_pred             Hhhc-C---CCHHHHHHHHHHHHHhhcCChhhHHHHHhcCCHHHHHHhhcCC
Q 015851          214 ELLE-F---TDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSE  261 (399)
Q Consensus       214 ~ll~-~---~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~L~~ll~~~  261 (399)
                      +.+. .   ++.++....-.+|..||- +..+.+.+.+.+.++.+.+++.++
T Consensus       158 ~~i~~~~i~~s~e~l~~lP~~l~AicL-N~~Gl~~~~~~~~l~~~f~if~s~  208 (379)
T PF06025_consen  158 DAITAKGILPSSEVLTSLPNVLSAICL-NNRGLEKVKSSNPLDKLFEIFTSP  208 (379)
T ss_pred             HHHhccCCCCcHHHHHHHHHHHhHHhc-CHHHHHHHHhcChHHHHHHHhCCH
Confidence            9888 4   357788888899999998 899999999999999999988763

This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=97.74  E-value=0.0027  Score=64.73  Aligned_cols=259  Identities=17%  Similarity=0.097  Sum_probs=164.6

Q ss_pred             HHHHHHHHHHHHHHcCC--hhHHHHHHhCCChHHHHhcccCCCCcccccCCCcchHHHHHHHHHHHHHhc----CChhhH
Q 015851           77 RAAAKRATHVLAELAKN--EEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA----VKPEHQ  150 (399)
Q Consensus        77 ~~~~~~a~~~L~~l~~~--~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~~~~~a~~~L~~l~----~~~~~~  150 (399)
                      ...+..|++.|..++..  .+.+    -.-++|.++.++.++..            +||..|+.+|..+-    .-+..-
T Consensus       437 ~~tK~~ALeLl~~lS~~i~de~~----LDRVlPY~v~l~~Ds~a------------~Vra~Al~Tlt~~L~~Vr~~~~~d  500 (1431)
T KOG1240|consen  437 IQTKLAALELLQELSTYIDDEVK----LDRVLPYFVHLLMDSEA------------DVRATALETLTELLALVRDIPPSD  500 (1431)
T ss_pred             chhHHHHHHHHHHHhhhcchHHH----HhhhHHHHHHHhcCchH------------HHHHHHHHHHHHHHhhccCCCccc
Confidence            45678999999998873  3332    23469999999999887            78889999888865    223333


Q ss_pred             HHHHhcCcHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhhc------------------Cchh----------HHH
Q 015851          151 QLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHE------------------NSSI----------KTR  202 (399)
Q Consensus       151 ~~i~~~~~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~------------------~~~~----------~~~  202 (399)
                      ..+.-.-.+|.|-.++.+.+..       -++..-+..|..|+..                  ++..          ...
T Consensus       501 aniF~eYlfP~L~~l~~d~~~~-------~vRiayAsnla~LA~tA~rFle~~q~~~~~g~~n~~nset~~~~~~~~~~~  573 (1431)
T KOG1240|consen  501 ANIFPEYLFPHLNHLLNDSSAQ-------IVRIAYASNLAQLAKTAYRFLELTQELRQAGMLNDPNSETAPEQNYNTELQ  573 (1431)
T ss_pred             chhhHhhhhhhhHhhhccCccc-------eehhhHHhhHHHHHHHHHHHHHHHHHHHhcccccCcccccccccccchHHH
Confidence            3344444677777777764322       2333333333333311                  1110          000


Q ss_pred             HHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChh
Q 015851          203 VRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPN  282 (399)
Q Consensus       203 ~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~  282 (399)
                      ..-.++-.....++.++.+-|++..+..|.-|+...  +++ --..-+++.|+..|++.|..+|..-...|..++..-. 
T Consensus       574 ~L~~~V~~~v~sLlsd~~~~Vkr~Lle~i~~LC~FF--Gk~-ksND~iLshLiTfLNDkDw~LR~aFfdsI~gvsi~VG-  649 (1431)
T KOG1240|consen  574 ALHHTVEQMVSSLLSDSPPIVKRALLESIIPLCVFF--GKE-KSNDVILSHLITFLNDKDWRLRGAFFDSIVGVSIFVG-  649 (1431)
T ss_pred             HHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHh--hhc-ccccchHHHHHHHhcCccHHHHHHHHhhccceEEEEe-
Confidence            111122234455667777788888888888877521  111 1112357889999999999898766666665553211 


Q ss_pred             HHHHHHHCCCcHHHHHhhcCCChHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhc
Q 015851          283 IKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQ  362 (399)
Q Consensus       283 ~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~  362 (399)
                        ..-.+..++|.|.+-|.++.+.|...|+.+|.-|+...--.+..+.+  +++....+|-+++.-+|+.++.+|..+++
T Consensus       650 --~rs~seyllPLl~Q~ltD~EE~Viv~aL~~ls~Lik~~ll~K~~v~~--i~~~v~PlL~hPN~WIR~~~~~iI~~~~~  725 (1431)
T KOG1240|consen  650 --WRSVSEYLLPLLQQGLTDGEEAVIVSALGSLSILIKLGLLRKPAVKD--ILQDVLPLLCHPNLWIRRAVLGIIAAIAR  725 (1431)
T ss_pred             --eeeHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHhcccchHHHHH--HHHhhhhheeCchHHHHHHHHHHHHHHHh
Confidence              11234557899999999999999999999999998643222233333  46677778888999999999999998887


Q ss_pred             cCCC
Q 015851          363 VITV  366 (399)
Q Consensus       363 ~~~~  366 (399)
                      .-.+
T Consensus       726 ~ls~  729 (1431)
T KOG1240|consen  726 QLSA  729 (1431)
T ss_pred             hhhh
Confidence            5554

>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.72  E-value=0.00043  Score=67.47  Aligned_cols=241  Identities=18%  Similarity=0.126  Sum_probs=162.2

Q ss_pred             ChhHHHHHHhCCChHHHHhcccCCCCcccccCCCcchHHHHHHHHHHHH-HhcCChhhHHHHHhcCcHHHHHHHHhcccc
Q 015851           93 NEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALG-LLAVKPEHQQLIVDNGALSHLVNLLKRHMD  171 (399)
Q Consensus        93 ~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~~~~~a~~~L~-~l~~~~~~~~~i~~~~~i~~L~~~L~~~~~  171 (399)
                      ...-+...++.|+...|+.+......            ..+..+..+|. .+. .+..+.    ...++.+...+.....
T Consensus       493 ~K~~~~~~Ik~~~~~aLlrl~~~q~e------------~akl~~~~aL~~~i~-f~~~~~----~~v~~~~~s~~~~d~~  555 (748)
T KOG4151|consen  493 EKYERAKKIKPGGYEALLRLGQQQFE------------EAKLKWYHALAGKID-FPGERS----YEVVKPLDSALHNDEK  555 (748)
T ss_pred             hHHhcCccccccHHHHHHHHHHHhch------------HHHHHHHHHHhhhcC-CCCCch----hhhhhhhcchhhhhHH
Confidence            45566677788999999988775544            55666677776 332 111111    2244555555543322


Q ss_pred             CccccccHHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhhHHHHHh-cCC
Q 015851          172 SNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVE-CNA  250 (399)
Q Consensus       172 ~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~-~~~  250 (399)
                      .       --....+-++.||+..+...+..+....+++.+-.++..+++..++.++..+.||..+..-+...+.+ ...
T Consensus       556 ~-------~en~E~L~altnLas~s~s~r~~i~ke~~~~~ie~~~~ee~~~lqraa~e~~~NLl~~~~~~e~si~e~~~~  628 (748)
T KOG4151|consen  556 G-------LENFEALEALTNLASISESDRQKILKEKALGKIEELMTEENPALQRAALESIINLLWSPLLYERSIVEYKDR  628 (748)
T ss_pred             H-------HHHHHHHHHhhcccCcchhhHHHHHHHhcchhhHHHhhcccHHHHHHHHHHHHHHHhhHHHHHHHhhccccC
Confidence            1       12245788999999888888888888888888888888899999999999999999954444444555 455


Q ss_pred             HHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHH-HHHHCCCcHHHHHhhcCCChHHHHHHHHHHHHhhccChhhHHHH
Q 015851          251 LPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKK-EVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHI  329 (399)
Q Consensus       251 ~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~-~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l  329 (399)
                      ++.....+...++.....+++++..|+.....++. ..........+..++.+.+..++......+.|+.....+....+
T Consensus       629 l~~w~~~~e~~~E~~~lA~a~a~a~I~sv~~n~c~~~~~~~~~~e~~~~~i~~~~~~~qhrgl~~~ln~~~~~~ei~~~~  708 (748)
T KOG4151|consen  629 LKLWNLNLEVADEKFELAGAGALAAITSVVENHCSRILELLEWLEILVRAIQDEDDEIQHRGLVIILNLFEALFEIAEKI  708 (748)
T ss_pred             chHHHHHHHhhhhHHhhhccccccchhhcchhhhhhHHHhhcchHHHHHhhcCchhhhhhhhhhhhhhHHHHHHHHHHHh
Confidence            66666666667778888888888877765555554 33345678888999999999999999999999765555555666


Q ss_pred             HhcCCHHHHHHhhCCCCHHHHHHHHHHH
Q 015851          330 VQRGAVRPLIEMLQSPDVQLREMSAFAL  357 (399)
Q Consensus       330 ~~~g~v~~L~~ll~~~~~~v~~~a~~~L  357 (399)
                      .....++.+...-.-.....++.+..+|
T Consensus       709 ~~~~~~~~l~~~~~~~~a~~~~~~~~~l  736 (748)
T KOG4151|consen  709 FETEVMELLSGLQKLNRAPKREDAAPCL  736 (748)
T ss_pred             ccchHHHHHHHHHHhhhhhhhhhhhhHH
Confidence            6665555554443333333444444443

>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10

Probab=97.68  E-value=0.00033  Score=51.13  Aligned_cols=68  Identities=13%  Similarity=0.169  Sum_probs=60.2

Q ss_pred             HHHHHHHHHHHhhcCChhHHHHHHHCCCcHHHHHhh--cCCChHHHHHHHHHHHHhhccChhhHHHHHhc
Q 015851          265 IHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLL--SSCCSESQREAALLLGQFAATDSDCKVHIVQR  332 (399)
Q Consensus       265 v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL--~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~  332 (399)
                      ++...+.+|+|++..++.....+.+.|+++.+++.-  +..+|.++++|.++|-|++.++++++..+.+.
T Consensus         2 ~K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~eNQ~~I~~L   71 (102)
T PF09759_consen    2 FKRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPENQEFIAQL   71 (102)
T ss_pred             cHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHHHHHHHHhc
Confidence            467788999999998899999999999999999885  46789999999999999999999998877663

Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].

>smart00185 ARM Armadillo/beta-catenin-like repeats

Probab=97.61  E-value=0.00018  Score=43.27  Aligned_cols=39  Identities=38%  Similarity=0.609  Sum_probs=35.7

Q ss_pred             hhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhh
Q 015851          239 DENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLV  277 (399)
Q Consensus       239 ~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~  277 (399)
                      ++++..+.+.|+++.|+.++.+++++++..++++|+||+
T Consensus         2 ~~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~   40 (41)
T smart00185        2 DEQKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLS   40 (41)
T ss_pred             cHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence            347778889999999999999999999999999999996

Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.

>smart00185 ARM Armadillo/beta-catenin-like repeats

Probab=97.61  E-value=0.00018  Score=43.28  Aligned_cols=40  Identities=30%  Similarity=0.505  Sum_probs=36.2

Q ss_pred             hhhHHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhc
Q 015851          323 SDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQ  362 (399)
Q Consensus       323 ~~~~~~l~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~  362 (399)
                      ++++..+.+.|+++.|++++.+++++++..++++|+|++.
T Consensus         2 ~~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~~   41 (41)
T smart00185        2 DEQKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLSS   41 (41)
T ss_pred             cHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHcC
Confidence            3477788899999999999999999999999999999973

Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.

>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]

Probab=97.59  E-value=0.0038  Score=61.91  Aligned_cols=156  Identities=16%  Similarity=0.141  Sum_probs=115.9

Q ss_pred             HHHHHHHhhcCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhhHHHHHhcCCHHHHHHhhcCCCHHH
Q 015851          186 ADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAI  265 (399)
Q Consensus       186 ~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v  265 (399)
                      =.+|..++.+++ .      ...++.+++...+.|.++++..-.-|.+.+...|+-.   +-  ++..+.+=+.++++.+
T Consensus        41 K~iIa~M~~G~d-m------ssLf~dViK~~~trd~ElKrL~ylYl~~yak~~P~~~---lL--avNti~kDl~d~N~~i  108 (757)
T COG5096          41 KKIIAQMSLGED-M------SSLFPDVIKNVATRDVELKRLLYLYLERYAKLKPELA---LL--AVNTIQKDLQDPNEEI  108 (757)
T ss_pred             HHHHHHHhcCCC-h------HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhccCHHHH---HH--HHHHHHhhccCCCHHH
Confidence            346666775544 1      2235666777678888999888888888887655222   11  2556777788899999


Q ss_pred             HHHHHHHHHHhhcCChhHHHHHHHCCCcHHHHHhhcCCChHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHhhCCC
Q 015851          266 HYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSP  345 (399)
Q Consensus       266 ~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~v~~L~~ll~~~  345 (399)
                      |..|+++++.+-  .++...     .+++++.+++.++++.||+.|+.++.++=.   -....+.+.|.+..+..++.+.
T Consensus       109 R~~AlR~ls~l~--~~el~~-----~~~~~ik~~l~d~~ayVRk~Aalav~kly~---ld~~l~~~~g~~~~l~~l~~D~  178 (757)
T COG5096         109 RGFALRTLSLLR--VKELLG-----NIIDPIKKLLTDPHAYVRKTAALAVAKLYR---LDKDLYHELGLIDILKELVADS  178 (757)
T ss_pred             HHHHHHHHHhcC--hHHHHH-----HHHHHHHHHccCCcHHHHHHHHHHHHHHHh---cCHhhhhcccHHHHHHHHhhCC
Confidence            999999998883  233322     357888999999999999999999999853   3445666788888888899899


Q ss_pred             CHHHHHHHHHHHHHhhcc
Q 015851          346 DVQLREMSAFALGRLAQV  363 (399)
Q Consensus       346 ~~~v~~~a~~~L~~l~~~  363 (399)
                      +|.|..+|..+|..+...
T Consensus       179 dP~Vi~nAl~sl~~i~~e  196 (757)
T COG5096         179 DPIVIANALASLAEIDPE  196 (757)
T ss_pred             CchHHHHHHHHHHHhchh
Confidence            999999999999988877

>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis

Probab=97.51  E-value=0.027  Score=51.22  Aligned_cols=203  Identities=13%  Similarity=0.178  Sum_probs=142.7

Q ss_pred             HHHHhCCChHHHHhcccCCCCcccccCCCcchHHHHHHHHHHHHHhc-CChhh-----HHHHHhcCcHHHHHHHHhcccc
Q 015851           98 NWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA-VKPEH-----QQLIVDNGALSHLVNLLKRHMD  171 (399)
Q Consensus        98 ~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~~~~~a~~~L~~l~-~~~~~-----~~~i~~~~~i~~L~~~L~~~~~  171 (399)
                      ..+...|.+..|+..|..-+-            +.|..++.++.++. .....     .+.+...  -+.++..|-.+.+
T Consensus        70 ~Ei~~~dll~~Li~~L~~L~f------------EsrKdv~~if~~llr~~~~~~~~p~v~yl~~~--~peil~~L~~gy~  135 (335)
T PF08569_consen   70 QEIYRSDLLYLLIRNLPKLDF------------ESRKDVAQIFSNLLRRQIGSRSPPTVDYLERH--RPEILDILLRGYE  135 (335)
T ss_dssp             HHHHHHTHHHHHHHTGGGS-H------------HHHHHHHHHHHHHHT--BTTB--HHHHHHHT----THHHHHHHHGGG
T ss_pred             HHHHHhCHHHHHHHHhhhCCC------------cccccHHHHHHHHHhhccCCCCCchHHHHHhC--CHHHHHHHHHHhc
Confidence            345567888888888876544            88889999999988 33322     3333332  1344444444433


Q ss_pred             CccccccHHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhhHHHHHhc---
Q 015851          172 SNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVEC---  248 (399)
Q Consensus       172 ~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~---  248 (399)
                      .+      ++...+-..|..++. .+.....+.....+..+.+....++-++...|..++..+...++.....+...   
T Consensus       136 ~~------dial~~g~mlRec~k-~e~l~~~iL~~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d  208 (335)
T PF08569_consen  136 NP------DIALNCGDMLRECIK-HESLAKIILYSECFWKFFKYVQLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYD  208 (335)
T ss_dssp             ST------TTHHHHHHHHHHHTT-SHHHHHHHHTSGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHH
T ss_pred             Cc------cccchHHHHHHHHHh-hHHHHHHHhCcHHHHHHHHHhcCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence            32      566667777777774 55555567778888889999999999999999999999888778777777663   


Q ss_pred             CCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHH---HHHHHCCCcHHHHHhhcCCChHHHHHHHHHHHHhhcc
Q 015851          249 NALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIK---KEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAAT  321 (399)
Q Consensus       249 ~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~---~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~  321 (399)
                      .++..+..+|.+++--++..++..|+.+........   ..+-+..-+..++.+|++.+..++-+|.-+.--+.+.
T Consensus       209 ~ff~~~~~Ll~s~NYvtkrqslkLL~ellldr~n~~vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvFVAN  284 (335)
T PF08569_consen  209 RFFQKYNKLLESSNYVTKRQSLKLLGELLLDRSNFNVMTRYISSPENLKLMMNLLRDKSKNIQFEAFHVFKVFVAN  284 (335)
T ss_dssp             HHHHHHHHHCT-SSHHHHHHHHHHHHHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHH-
T ss_pred             HHHHHHHHHccCCCeEeehhhHHHHHHHHHchhHHHHHHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHHHHHhC
Confidence            456778889999999999999999999986433221   2223445688899999999999999999888877764

In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.

>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=97.44  E-value=0.071  Score=53.82  Aligned_cols=243  Identities=13%  Similarity=0.099  Sum_probs=131.6

Q ss_pred             hhHHHHhhhhhc------chhhhHHHHHHHHHHHHHHcCC---hhHHHHHHhCCChHHHHhcccCCCCcccccCCCcchH
Q 015851           60 SAQVNVLNTTFS------WLEADRAAAKRATHVLAELAKN---EEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEH  130 (399)
Q Consensus        60 ~~~~~~L~~~l~------~~~~~~~~~~~a~~~L~~l~~~---~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~  130 (399)
                      +..++.+...+.      ....++.-...|+..++++++-   +..-....+.-+++-+...++++..            
T Consensus       409 ~k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~~~~~mE~flv~hVfP~f~s~~g------------  476 (1010)
T KOG1991|consen  409 PKILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKSPYKSQMEYFLVNHVFPEFQSPYG------------  476 (1010)
T ss_pred             hhHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCCchHHHHHHHHHHHhhHhhcCchh------------
Confidence            344555554443      2344566777888888888751   2222233344455556666666655            


Q ss_pred             HHHHHHHHHHHHhc-CChhhHHHHHhcCcHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhhcCchhHHHHHhc--C
Q 015851          131 EVEKGSAFALGLLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRME--G  207 (399)
Q Consensus       131 ~~~~~a~~~L~~l~-~~~~~~~~i~~~~~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~--~  207 (399)
                      -+|..|+|+++.++ .+=.....+.  .++....+.|.++++-       .++..++.+|..+..+.+.....+..+  +
T Consensus       477 ~Lrarac~vl~~~~~~df~d~~~l~--~ale~t~~~l~~d~~l-------PV~VeAalALq~fI~~~~~~~e~~~~hvp~  547 (1010)
T KOG1991|consen  477 YLRARACWVLSQFSSIDFKDPNNLS--EALELTHNCLLNDNEL-------PVRVEAALALQSFISNQEQADEKVSAHVPP  547 (1010)
T ss_pred             HHHHHHHHHHHHHHhccCCChHHHH--HHHHHHHHHhccCCcC-------chhhHHHHHHHHHHhcchhhhhhHhhhhhH
Confidence            68889999999999 3222222222  2566677777754333       688889999999997776655544433  3


Q ss_pred             ChHHHHHhhcCCCHHHHHHHHHHH-HHhhcCChhhHHHHHhcCCHHHHHHhhcC---C---CHHHHHHHHHHHHHhhc--
Q 015851          208 GIPPLVELLEFTDTKVQRAAAGAL-RTLAFKNDENKNQIVECNALPTLILMLRS---E---DSAIHYEAVGVIGNLVH--  278 (399)
Q Consensus       208 ~i~~L~~ll~~~~~~v~~~a~~~L-~~L~~~~~~~~~~~~~~~~~~~L~~ll~~---~---~~~v~~~a~~~L~~l~~--  278 (399)
                      .+..|+.+.+.-+.+.....+..+ ...+..-......++++ ....+.+++..   .   +.+=...|.++|..+..  
T Consensus       548 ~mq~lL~L~ne~End~Lt~vme~iV~~fseElsPfA~eL~q~-La~~F~k~l~~~~~~~~~~ddk~iaA~GiL~Ti~Til  626 (1010)
T KOG1991|consen  548 IMQELLKLSNEVENDDLTNVMEKIVCKFSEELSPFAVELCQN-LAETFLKVLQTSEDEDESDDDKAIAASGILRTISTIL  626 (1010)
T ss_pred             HHHHHHHHHHhcchhHHHHHHHHHHHHHHHhhchhHHHHHHH-HHHHHHHHHhccCCCCccchHHHHHHHHHHHHHHHHH
Confidence            444555555554444444333332 22222111222333332 45556666663   1   12223344555544431  


Q ss_pred             -CChhHHHHH---HHCCCcHHHHHhhcCCChHHHHHHHHHHHHhhccChhh
Q 015851          279 -SSPNIKKEV---LAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDC  325 (399)
Q Consensus       279 -~~~~~~~~~---~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~  325 (399)
                       +-+ ....+   ++..+++.+-.+|++.-.++-++++..+.+++...++.
T Consensus       627 ~s~e-~~p~vl~~le~~~l~vi~~iL~~~i~dfyeE~~ei~~~~t~~~~~I  676 (1010)
T KOG1991|consen  627 LSLE-NHPEVLKQLEPIVLPVIGFILKNDITDFYEELLEIVSSLTFLSKEI  676 (1010)
T ss_pred             HHHh-ccHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhhhhccc
Confidence             111 11111   12334555556667777788888888888777554433

>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.42  E-value=0.07  Score=51.90  Aligned_cols=138  Identities=22%  Similarity=0.212  Sum_probs=91.5

Q ss_pred             HHHHHHHhhcCChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHHCCCcHHHHHhhc-CCCh
Q 015851          227 AAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLS-SCCS  305 (399)
Q Consensus       227 a~~~L~~L~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~-~~~~  305 (399)
                      .+.-.-+++.+.+...+.+..  .+..|-+++.+.+..+|..|+..+..++.+ ......+-.+  .+.++..|+ ..+.
T Consensus       309 VLFeaI~l~~h~D~e~~ll~~--~~~~Lg~fls~rE~NiRYLaLEsm~~L~ss-~~s~davK~h--~d~Ii~sLkterDv  383 (938)
T KOG1077|consen  309 VLFEAISLAIHLDSEPELLSR--AVNQLGQFLSHRETNIRYLALESMCKLASS-EFSIDAVKKH--QDTIINSLKTERDV  383 (938)
T ss_pred             HHHHHHHHHHHcCCcHHHHHH--HHHHHHHHhhcccccchhhhHHHHHHHHhc-cchHHHHHHH--HHHHHHHhccccch
Confidence            333334444433333333333  366677788888888888888888888865 3333444433  778888888 6788


Q ss_pred             HHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhccCCC-C--cchhHHHHH
Q 015851          306 ESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQVITV-S--VLPAILIFI  376 (399)
Q Consensus       306 ~v~~~a~~~L~~l~~~~~~~~~~l~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~-~--~~~~~~~~~  376 (399)
                      .++..|+-.|..+|.  .++.+.+++     -+++.+.+.++.+|+..+--+.-|++.-.- .  ++..+++++
T Consensus       384 SirrravDLLY~mcD--~~Nak~IV~-----elLqYL~tAd~sireeivlKvAILaEKyAtDy~WyVdviLqLi  450 (938)
T KOG1077|consen  384 SIRRRAVDLLYAMCD--VSNAKQIVA-----ELLQYLETADYSIREEIVLKVAILAEKYATDYSWYVDVILQLI  450 (938)
T ss_pred             HHHHHHHHHHHHHhc--hhhHHHHHH-----HHHHHHhhcchHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHH
Confidence            999999999999984  456555544     477777778999998887777777764332 2  344444444

>PF11841 DUF3361: Domain of unknown function (DUF3361)

Probab=97.41  E-value=0.0044  Score=49.19  Aligned_cols=135  Identities=13%  Similarity=0.199  Sum_probs=102.8

Q ss_pred             HHHHHhCCChHHHHhcccCCCCcccccCCCcchHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHHHhccccCcccc
Q 015851           97 VNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSR  176 (399)
Q Consensus        97 ~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~~~i~~L~~~L~~~~~~~~~~  176 (399)
                      ...|+..||+..|++++.+....      .++..++...++.++..|-+..-..-......++..++.++.....+.   
T Consensus         4 A~EFI~~~Gl~~L~~~iE~g~~~------~~~~~~~La~~L~af~eLMeHg~vsWd~l~~~FI~Kia~~Vn~~~~d~---   74 (160)
T PF11841_consen    4 AQEFISRDGLTLLIKMIEEGTEI------QPCKGEILAYALTAFVELMEHGIVSWDTLSDSFIKKIASYVNSSAMDA---   74 (160)
T ss_pred             HHHHHhccCHHHHHHHHHcCCcc------CcchHHHHHHHHHHHHHHHhcCcCchhhccHHHHHHHHHHHccccccc---
Confidence            45788999999999999876530      111226677888888888844332334555668889999998665322   


Q ss_pred             ccHHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhhHH
Q 015851          177 AVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKN  243 (399)
Q Consensus       177 ~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~  243 (399)
                         .+.+.++..|-++...++.....+...--++.|+..|...++.++..+...+..|....++.++
T Consensus        75 ---~i~q~sLaILEs~Vl~S~~ly~~V~~evt~~~Li~hLq~~~~~iq~naiaLinAL~~kA~~~~r  138 (160)
T PF11841_consen   75 ---SILQRSLAILESIVLNSPKLYQLVEQEVTLESLIRHLQVSNQEIQTNAIALINALFLKADDSKR  138 (160)
T ss_pred             ---hHHHHHHHHHHHHHhCCHHHHHHHhccCCHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCChHHH
Confidence               8999999999999987777677777777889999999999999999999999888876555433

>KOG1248 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.40  E-value=0.073  Score=54.77  Aligned_cols=229  Identities=15%  Similarity=0.144  Sum_probs=138.8

Q ss_pred             HHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhhcCchhHHHHHhcCChH
Q 015851          131 EVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIP  210 (399)
Q Consensus       131 ~~~~~a~~~L~~l~~~~~~~~~i~~~~~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~  210 (399)
                      .+|..+-++|..++..+........  -+..+.+.|.+.......    ..+...+.+|..|....+.--..+. ...|+
T Consensus       669 ~vQkK~yrlL~~l~~~~s~~~~~~q--~i~~I~n~L~ds~qs~~~----~~~~~rl~~L~~L~~~~~~e~~~~i-~k~I~  741 (1176)
T KOG1248|consen  669 KVQKKAYRLLEELSSSPSGEGLVEQ--RIDDIFNSLLDSFQSSSS----PAQASRLKCLKRLLKLLSAEHCDLI-PKLIP  741 (1176)
T ss_pred             HHHHHHHHHHHHHhcCCchhhHHHH--HHHHHHHHHHHHHhccch----HHHHHHHHHHHHHHHhccHHHHHHH-HHHHH
Confidence            7899999999999966554433322  244444444433221111    5667777777777754441111122 23344


Q ss_pred             HHHHhhcCCCHHHHHHHHHHHHHhhc---CChhh---HHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHH
Q 015851          211 PLVELLEFTDTKVQRAAAGALRTLAF---KNDEN---KNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIK  284 (399)
Q Consensus       211 ~L~~ll~~~~~~v~~~a~~~L~~L~~---~~~~~---~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~  284 (399)
                      -++-.+++.+...++.+..+|..+..   ..+.+   ....++. +++.+...+-.+...+....+-++..+........
T Consensus       742 EvIL~~Ke~n~~aR~~Af~lL~~i~~i~~~~d~g~e~~~~~lne-fl~~Isagl~gd~~~~~as~Ivai~~il~e~~~~l  820 (1176)
T KOG1248|consen  742 EVILSLKEVNVKARRNAFALLVFIGAIQSSLDDGNEPASAILNE-FLSIISAGLVGDSTRVVASDIVAITHILQEFKNIL  820 (1176)
T ss_pred             HHHHhcccccHHHHhhHHHHHHHHHHHHhhhcccccchHHHHHH-HHHHHHhhhcccHHHHHHHHHHHHHHHHHHHhccc
Confidence            44444588888999999999888882   01111   1112221 23333333333333333333555665554322322


Q ss_pred             HHHHHCCCcHHHHHhhcCCChHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhccC
Q 015851          285 KEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQVI  364 (399)
Q Consensus       285 ~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~  364 (399)
                      ....-.+.++.+..+|.+++++++..|+..+..++...|+..-.-....+++.+..++++....++..+...|-.|.+..
T Consensus       821 d~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l~~~~~~LL~sll~ls~d~k~~~r~Kvr~LlekLirkf  900 (1176)
T KOG1248|consen  821 DDETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEECLSPHLEELLPSLLALSHDHKIKVRKKVRLLLEKLIRKF  900 (1176)
T ss_pred             cHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHHhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHh
Confidence            33333455666667788999999999999999998777765544444557899999998888999999999999988776


Q ss_pred             CCC
Q 015851          365 TVS  367 (399)
Q Consensus       365 ~~~  367 (399)
                      .-+
T Consensus       901 g~~  903 (1176)
T KOG1248|consen  901 GAE  903 (1176)
T ss_pred             CHH
Confidence            643

>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []

Probab=97.40  E-value=0.0018  Score=55.45  Aligned_cols=180  Identities=13%  Similarity=0.171  Sum_probs=117.1

Q ss_pred             HHHHHHHHHHHHcCChhHHHHHHhCCChHHHHhcccCCCCcccccCCCcchHHHHHHHHHHHHHhc--CChhhHHHHHhc
Q 015851           79 AAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA--VKPEHQQLIVDN  156 (399)
Q Consensus        79 ~~~~a~~~L~~l~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~~~~~a~~~L~~l~--~~~~~~~~i~~~  156 (399)
                      -...|+..|-.+++||+.|..|.+..+.-.|..+|+..+..      .+| +.+|..++.+++.+.  ++++....+...
T Consensus        66 RVcnaLaLlQ~vAshpetr~~Fl~a~iplyLyPfL~tt~k~------r~~-E~LRLtsLGVIgaLvK~d~~evi~fLl~t  138 (262)
T PF04078_consen   66 RVCNALALLQCVASHPETRMPFLKAHIPLYLYPFLNTTSKT------RPF-EYLRLTSLGVIGALVKTDDPEVISFLLQT  138 (262)
T ss_dssp             HHHHHHHHHHHHHH-TTTHHHHHHTTGGGGGHHHHH----S------HHH-HHHHHHHHHHHHHHHTT--HHHHHHHHCT
T ss_pred             HHHHHHHHHHHHHcChHHHHHHHHcCchhhehhhhhccccc------ccc-chhhHhHHHHHHHHHcCCcHHHHHHHHhh
Confidence            35567777788899999999999999999999999865542      222 278999999999999  577888888999


Q ss_pred             CcHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhhcCchhHH------HHH-hcCChHHH-HHhhcCCCHHHHHHHH
Q 015851          157 GALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKT------RVR-MEGGIPPL-VELLEFTDTKVQRAAA  228 (399)
Q Consensus       157 ~~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~------~~~-~~~~i~~L-~~ll~~~~~~v~~~a~  228 (399)
                      +++|..++.++.+++        --+..|..++..+..++.....      .+. -..++..+ ..+...+++.+..+..
T Consensus       139 EiiplcLr~me~Gse--------lSKtvAtfIlqKIL~dd~GL~yiC~t~eRf~av~~vL~~mV~~l~~~pS~RLLKhII  210 (262)
T PF04078_consen  139 EIIPLCLRIMEFGSE--------LSKTVATFILQKILLDDVGLNYICQTAERFFAVAMVLNKMVEQLVKQPSPRLLKHII  210 (262)
T ss_dssp             THHHHHHHHHHHS-H--------HHHHHHHHHHHHHHHSHHHHHHHTSSHHHHHHHHHHHHHHHHHHHHS--HHHHHHHH
T ss_pred             chHHHHHHHHHhccH--------HHHHHHHHHHHHHHcchhHHHHHhcCHHHHHHHHHHHHHHHHHHccCCChhHHHHHH
Confidence            999999999998764        3444566666666644332211      111 11233333 3345677899999999


Q ss_pred             HHHHHhhcCChhhHHHHHhcCCHHHHHH-----hhcCCCHHHHHHHHHHHHHh
Q 015851          229 GALRTLAFKNDENKNQIVECNALPTLIL-----MLRSEDSAIHYEAVGVIGNL  276 (399)
Q Consensus       229 ~~L~~L~~~~~~~~~~~~~~~~~~~L~~-----ll~~~~~~v~~~a~~~L~~l  276 (399)
                      ++...|+. ++..+..+...  +|..++     .+-.+|+.++..-...+.|+
T Consensus       211 rCYlRLsd-nprar~aL~~~--LP~~Lrd~~f~~~l~~D~~~k~~l~qLl~nl  260 (262)
T PF04078_consen  211 RCYLRLSD-NPRAREALRQC--LPDQLRDGTFSNILKDDPSTKRWLQQLLSNL  260 (262)
T ss_dssp             HHHHHHTT-STTHHHHHHHH--S-GGGTSSTTTTGGCS-HHHHHHHHHHHHHT
T ss_pred             HHHHHHcc-CHHHHHHHHHh--CcHHHhcHHHHHHHhcCHHHHHHHHHHHHHh
Confidence            99999998 67777666542  222111     11124777777777777666

Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.

>PF11841 DUF3361: Domain of unknown function (DUF3361)

Probab=97.39  E-value=0.0061  Score=48.37  Aligned_cols=124  Identities=18%  Similarity=0.202  Sum_probs=96.7

Q ss_pred             HHHhcCChHHHHHhhcCCC------HHHHHHHHHHHHHhhcCChhhHHHHHhcCCHHHHHHhhcCC--CHHHHHHHHHHH
Q 015851          202 RVRMEGGIPPLVELLEFTD------TKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSE--DSAIHYEAVGVI  273 (399)
Q Consensus       202 ~~~~~~~i~~L~~ll~~~~------~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~L~~ll~~~--~~~v~~~a~~~L  273 (399)
                      .+...+|+..|+.++.++.      .++...++.++..|..+. ...=...+..++..++...+..  +..+...|+..|
T Consensus         6 EFI~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg-~vsWd~l~~~FI~Kia~~Vn~~~~d~~i~q~sLaIL   84 (160)
T PF11841_consen    6 EFISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHG-IVSWDTLSDSFIKKIASYVNSSAMDASILQRSLAIL   84 (160)
T ss_pred             HHHhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcC-cCchhhccHHHHHHHHHHHccccccchHHHHHHHHH
Confidence            4777899999999998866      378888999999988743 3223455555777777777653  678999999999


Q ss_pred             HHhhcCChhHHHHHHHCCCcHHHHHhhcCCChHHHHHHHHHHHHhhccChhhH
Q 015851          274 GNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCK  326 (399)
Q Consensus       274 ~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~  326 (399)
                      -+++.+++.....+...=.++.|+..|+.++++++.+|...+..+....++.+
T Consensus        85 Es~Vl~S~~ly~~V~~evt~~~Li~hLq~~~~~iq~naiaLinAL~~kA~~~~  137 (160)
T PF11841_consen   85 ESIVLNSPKLYQLVEQEVTLESLIRHLQVSNQEIQTNAIALINALFLKADDSK  137 (160)
T ss_pred             HHHHhCCHHHHHHHhccCCHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCChHH
Confidence            99998766655555555568999999999999999999998888876655443

>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]

Probab=97.37  E-value=0.029  Score=53.19  Aligned_cols=56  Identities=21%  Similarity=0.255  Sum_probs=40.7

Q ss_pred             CChHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhh
Q 015851          303 CCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLA  361 (399)
Q Consensus       303 ~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~  361 (399)
                      .+.-+|..|+.+|+.++-...+   .+....+...|..++.+.|.++|..|..+|.++-
T Consensus       499 EN~ivRsaAv~aLskf~ln~~d---~~~~~sv~~~lkRclnD~DdeVRdrAsf~l~~~~  554 (898)
T COG5240         499 ENNIVRSAAVQALSKFALNISD---VVSPQSVENALKRCLNDQDDEVRDRASFLLRNMR  554 (898)
T ss_pred             hhhHHHHHHHHHHHHhccCccc---cccHHHHHHHHHHHhhcccHHHHHHHHHHHHhhh
Confidence            3456788888999887643211   2223334567888999999999999999999987

>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.36  E-value=0.036  Score=54.20  Aligned_cols=214  Identities=15%  Similarity=0.206  Sum_probs=134.6

Q ss_pred             hHHHHhcccCCCCcccccCCCcchHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHHHhccccCccccccHHHHHHH
Q 015851          106 VPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRA  185 (399)
Q Consensus       106 l~~L~~lL~~~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~~~i~~L~~~L~~~~~~~~~~~~~~~~~~a  185 (399)
                      +..+..+|.+.++            .++..|+.+|.+++.+|..-..     +...+++++.+.++.       .+....
T Consensus       245 i~~i~~lL~stss------------aV~fEaa~tlv~lS~~p~alk~-----Aa~~~i~l~~kesdn-------nvklIv  300 (948)
T KOG1058|consen  245 IRCIYNLLSSTSS------------AVIFEAAGTLVTLSNDPTALKA-----AASTYIDLLVKESDN-------NVKLIV  300 (948)
T ss_pred             HHHHHHHHhcCCc------------hhhhhhcceEEEccCCHHHHHH-----HHHHHHHHHHhccCc-------chhhhh
Confidence            5556667766655            6667777777777766654332     345566666665554       444445


Q ss_pred             HHHHHHHhhcCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhhHHHHHhcCCHHHHHHhh-------
Q 015851          186 ADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILML-------  258 (399)
Q Consensus       186 ~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~L~~ll-------  258 (399)
                      +.-|..+...+..    +. .|.+--++..|.+++.+++..++.....|+..  .+...++.     .|-+=+       
T Consensus       301 ldrl~~l~~~~~~----il-~~l~mDvLrvLss~dldvr~Ktldi~ldLvss--rNvediv~-----~Lkke~~kT~~~e  368 (948)
T KOG1058|consen  301 LDRLSELKALHEK----IL-QGLIMDVLRVLSSPDLDVRSKTLDIALDLVSS--RNVEDIVQ-----FLKKEVMKTHNEE  368 (948)
T ss_pred             HHHHHHHhhhhHH----HH-HHHHHHHHHHcCcccccHHHHHHHHHHhhhhh--ccHHHHHH-----HHHHHHHhccccc
Confidence            5555555532222    11 34555677888999999999999988888863  22222222     111111       


Q ss_pred             cCCCHHHHHHHHHHHHHhhcCChhHHHHHHHCCCcHHHHHhhcCCChHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHH
Q 015851          259 RSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPL  338 (399)
Q Consensus       259 ~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~v~~L  338 (399)
                      .+++.+.|.....+++..+...++..     +.+++.+++.+.+.++......+..+.......|..+..+++     .|
T Consensus       369 ~d~~~~yRqlLiktih~cav~Fp~~a-----atvV~~ll~fisD~N~~aas~vl~FvrE~iek~p~Lr~~ii~-----~l  438 (948)
T KOG1058|consen  369 SDDNGKYRQLLIKTIHACAVKFPEVA-----ATVVSLLLDFISDSNEAAASDVLMFVREAIEKFPNLRASIIE-----KL  438 (948)
T ss_pred             cccchHHHHHHHHHHHHHhhcChHHH-----HHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhCchHHHHHHH-----HH
Confidence            11344678888999999887666653     346899999999888776666666666666555655555443     34


Q ss_pred             HHhhC-CCCHHHHHHHHHHHHHhhccCC
Q 015851          339 IEMLQ-SPDVQLREMSAFALGRLAQVIT  365 (399)
Q Consensus       339 ~~ll~-~~~~~v~~~a~~~L~~l~~~~~  365 (399)
                      +.-+. -.+.++-+.|+|+++..+....
T Consensus       439 ~~~~~~irS~ki~rgalwi~GeYce~~~  466 (948)
T KOG1058|consen  439 LETFPQIRSSKICRGALWILGEYCEGLS  466 (948)
T ss_pred             HHhhhhhcccccchhHHHHHHHHHhhhH
Confidence            44332 2466788889999998887655

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=97.33  E-value=0.0043  Score=63.29  Aligned_cols=219  Identities=15%  Similarity=0.025  Sum_probs=139.1

Q ss_pred             HHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhh---cCchhHHHHHhcC
Q 015851          131 EVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAH---ENSSIKTRVRMEG  207 (399)
Q Consensus       131 ~~~~~a~~~L~~l~~~~~~~~~i~~~~~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~---~~~~~~~~~~~~~  207 (399)
                      +.+..|+..|..++..-..-..+  -.++|+++.++.+...        .++..|+.+|..+..   .-+.....+...=
T Consensus       438 ~tK~~ALeLl~~lS~~i~de~~L--DRVlPY~v~l~~Ds~a--------~Vra~Al~Tlt~~L~~Vr~~~~~daniF~eY  507 (1431)
T KOG1240|consen  438 QTKLAALELLQELSTYIDDEVKL--DRVLPYFVHLLMDSEA--------DVRATALETLTELLALVRDIPPSDANIFPEY  507 (1431)
T ss_pred             hhHHHHHHHHHHHhhhcchHHHH--hhhHHHHHHHhcCchH--------HHHHHHHHHHHHHHhhccCCCcccchhhHhh
Confidence            67889999999999332222222  2378999999998877        888888888877763   2223333344455


Q ss_pred             ChHHHHHhhcCC-CHHHHHHHHHHHHHhhcC-----------------C-hhh-----------HHHHHhcCCHHHHHHh
Q 015851          208 GIPPLVELLEFT-DTKVQRAAAGALRTLAFK-----------------N-DEN-----------KNQIVECNALPTLILM  257 (399)
Q Consensus       208 ~i~~L~~ll~~~-~~~v~~~a~~~L~~L~~~-----------------~-~~~-----------~~~~~~~~~~~~L~~l  257 (399)
                      .+|.|-.++.+. ...+|..-+..|+.|+..                 + ++.           ...+.+ ++=+....+
T Consensus       508 lfP~L~~l~~d~~~~~vRiayAsnla~LA~tA~rFle~~q~~~~~g~~n~~nset~~~~~~~~~~~~L~~-~V~~~v~sL  586 (1431)
T KOG1240|consen  508 LFPHLNHLLNDSSAQIVRIAYASNLAQLAKTAYRFLELTQELRQAGMLNDPNSETAPEQNYNTELQALHH-TVEQMVSSL  586 (1431)
T ss_pred             hhhhhHhhhccCccceehhhHHhhHHHHHHHHHHHHHHHHHHHhcccccCcccccccccccchHHHHHHH-HHHHHHHHH
Confidence            678888888774 455666666777666630                 0 000           011111 112234456


Q ss_pred             hcCCCHHHHHHHHHHHHHhhcCChhHHHHHHHCCCcHHHHHhhcCCChHHHHHHHHHHHHhhccChhhHHHHHhcCCHHH
Q 015851          258 LRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRP  337 (399)
Q Consensus       258 l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~v~~  337 (399)
                      +.++++-|+...+..|.-||.-....   =-+.=+++.|+.+|+..++.+|..=...|..++..  .+ ..-.+..++|.
T Consensus       587 lsd~~~~Vkr~Lle~i~~LC~FFGk~---ksND~iLshLiTfLNDkDw~LR~aFfdsI~gvsi~--VG-~rs~seyllPL  660 (1431)
T KOG1240|consen  587 LSDSPPIVKRALLESIIPLCVFFGKE---KSNDVILSHLITFLNDKDWRLRGAFFDSIVGVSIF--VG-WRSVSEYLLPL  660 (1431)
T ss_pred             HcCCchHHHHHHHHHHHHHHHHhhhc---ccccchHHHHHHHhcCccHHHHHHHHhhccceEEE--Ee-eeeHHHHHHHH
Confidence            66667778877777777776321110   00112578999999988888776655555544432  11 12245667899


Q ss_pred             HHHhhCCCCHHHHHHHHHHHHHhhccCCC
Q 015851          338 LIEMLQSPDVQLREMSAFALGRLAQVITV  366 (399)
Q Consensus       338 L~~ll~~~~~~v~~~a~~~L~~l~~~~~~  366 (399)
                      |.+-+.++.+.|...|..+|..|++..--
T Consensus       661 l~Q~ltD~EE~Viv~aL~~ls~Lik~~ll  689 (1431)
T KOG1240|consen  661 LQQGLTDGEEAVIVSALGSLSILIKLGLL  689 (1431)
T ss_pred             HHHhccCcchhhHHHHHHHHHHHHHhccc
Confidence            99999999999999999999999987663

>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]

Probab=97.33  E-value=0.02  Score=48.93  Aligned_cols=197  Identities=18%  Similarity=0.193  Sum_probs=123.6

Q ss_pred             hhhHHHHhhhhhcchhhhHHHHHHHHHHHHHHcCChhHHHHHHhCCChHHHHhcccCCCCcccccCCCcchHHHHHHHHH
Q 015851           59 VSAQVNVLNTTFSWLEADRAAAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAF  138 (399)
Q Consensus        59 ~~~~~~~L~~~l~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~~~~~a~~  138 (399)
                      ....++.|...+...+..+.+|.+|..+|..+. +++.         ++.+-++.+++-.            .+++-+..
T Consensus        65 ~~~Av~~l~~vl~desq~pmvRhEAaealga~~-~~~~---------~~~l~k~~~dp~~------------~v~ETc~l  122 (289)
T KOG0567|consen   65 DEDAVPVLVEVLLDESQEPMVRHEAAEALGAIG-DPES---------LEILTKYIKDPCK------------EVRETCEL  122 (289)
T ss_pred             cchhhHHHHHHhcccccchHHHHHHHHHHHhhc-chhh---------HHHHHHHhcCCcc------------ccchHHHH
Confidence            345678888888777788899999999999887 4443         5556666655444            34444555


Q ss_pred             HHHHhc-CC---------------hhhHHHHHhcCcHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhhcCchhHHH
Q 015851          139 ALGLLA-VK---------------PEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTR  202 (399)
Q Consensus       139 ~L~~l~-~~---------------~~~~~~i~~~~~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~  202 (399)
                      ++..+- .+               |...   ...+-+..+-..|.+.....      --+..++..|.|+-         
T Consensus       123 Ai~rle~~~~~~~~~~~~p~~SvdPa~p---~~~ssv~~lr~~lld~t~~l------~~Ry~amF~LRn~g---------  184 (289)
T KOG0567|consen  123 AIKRLEWKDIIDKIANSSPYISVDPAPP---ANLSSVHELRAELLDETKPL------FERYRAMFYLRNIG---------  184 (289)
T ss_pred             HHHHHHHhhccccccccCccccCCCCCc---cccccHHHHHHHHHhcchhH------HHHHhhhhHhhccC---------
Confidence            555543 11               1111   01111333333333322210      11222333333332         


Q ss_pred             HHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhhHHHHHhcCCHHHHHHhhcC--CCHHHHHHHHHHHHHhhcCC
Q 015851          203 VRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRS--EDSAIHYEAVGVIGNLVHSS  280 (399)
Q Consensus       203 ~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~L~~ll~~--~~~~v~~~a~~~L~~l~~~~  280 (399)
                        ....|..|++-+..++.-.|..++.+++.|-+  +         -.+|.|.+.|.+  +++-+|..|+.+|+.++.  
T Consensus       185 --~EeaI~al~~~l~~~SalfrhEvAfVfGQl~s--~---------~ai~~L~k~L~d~~E~pMVRhEaAeALGaIa~--  249 (289)
T KOG0567|consen  185 --TEEAINALIDGLADDSALFRHEVAFVFGQLQS--P---------AAIPSLIKVLLDETEHPMVRHEAAEALGAIAD--  249 (289)
T ss_pred             --cHHHHHHHHHhcccchHHHHHHHHHHHhhccc--h---------hhhHHHHHHHHhhhcchHHHHHHHHHHHhhcC--
Confidence              01235566777777888899999999998876  2         258888888765  578999999999999973  


Q ss_pred             hhHHHHHHHCCCcHHHHHhhcCCChHHHHHHHHHHHHhh
Q 015851          281 PNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFA  319 (399)
Q Consensus       281 ~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~  319 (399)
                      ++.         ++.|.+++..+.+-+++.+..+|..+-
T Consensus       250 e~~---------~~vL~e~~~D~~~vv~esc~valdm~e  279 (289)
T KOG0567|consen  250 EDC---------VEVLKEYLGDEERVVRESCEVALDMLE  279 (289)
T ss_pred             HHH---------HHHHHHHcCCcHHHHHHHHHHHHHHHH
Confidence            443         667778888888888888888887664

>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis

Probab=97.32  E-value=0.027  Score=51.22  Aligned_cols=204  Identities=14%  Similarity=0.120  Sum_probs=146.5

Q ss_pred             HHHHhcCcHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhhcCchhHH-----HHHh--cCChHHHHHhhcCCCHHH
Q 015851          151 QLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKT-----RVRM--EGGIPPLVELLEFTDTKV  223 (399)
Q Consensus       151 ~~i~~~~~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~-----~~~~--~~~i~~L~~ll~~~~~~v  223 (399)
                      ..+...+.+..|+..|..-+-        +.+..+..+..++.......+.     .+..  ...+..|+.--  +++++
T Consensus        70 ~Ei~~~dll~~Li~~L~~L~f--------EsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy--~~~di  139 (335)
T PF08569_consen   70 QEIYRSDLLYLLIRNLPKLDF--------ESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGY--ENPDI  139 (335)
T ss_dssp             HHHHHHTHHHHHHHTGGGS-H--------HHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGG--GSTTT
T ss_pred             HHHHHhCHHHHHHHHhhhCCC--------cccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHh--cCccc
Confidence            345566788889988887766        8889999999999865433321     2221  12233333332  34666


Q ss_pred             HHHHHHHHHHhhcCChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHHCC---CcHHHHHhh
Q 015851          224 QRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAG---ALQPVIGLL  300 (399)
Q Consensus       224 ~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~---~l~~L~~lL  300 (399)
                      .-.+...|+..+. .+.....+.....+-.+...+..++-++...|..++..+-...+......+..+   ++.....+|
T Consensus       140 al~~g~mlRec~k-~e~l~~~iL~~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll  218 (335)
T PF08569_consen  140 ALNCGDMLRECIK-HESLAKIILYSECFWKFFKYVQLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLL  218 (335)
T ss_dssp             HHHHHHHHHHHTT-SHHHHHHHHTSGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHC
T ss_pred             cchHHHHHHHHHh-hHHHHHHHhCcHHHHHHHHHhcCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHc
Confidence            6677777888887 677788888888888899999999999999999999997766666666666544   566778889


Q ss_pred             cCCChHHHHHHHHHHHHhhccChhhH----HHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhccCCC
Q 015851          301 SSCCSESQREAALLLGQFAATDSDCK----VHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQVITV  366 (399)
Q Consensus       301 ~~~~~~v~~~a~~~L~~l~~~~~~~~----~~l~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~  366 (399)
                      .+++.-++..++..|+.+.. ++.+.    +.+.+..-+..+..+|++++..++-.|-.+...+..++..
T Consensus       219 ~s~NYvtkrqslkLL~elll-dr~n~~vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvFVANp~K  287 (335)
T PF08569_consen  219 ESSNYVTKRQSLKLLGELLL-DRSNFNVMTRYISSPENLKLMMNLLRDKSKNIQFEAFHVFKVFVANPNK  287 (335)
T ss_dssp             T-SSHHHHHHHHHHHHHHHH-SGGGHHHHHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHH-SS-
T ss_pred             cCCCeEeehhhHHHHHHHHH-chhHHHHHHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHHHHHhCCCC
Confidence            99999999999999999985 44443    3344466788999999999999999999999999988654

In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.

>KOG2259 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.31  E-value=0.0018  Score=61.89  Aligned_cols=207  Identities=16%  Similarity=0.161  Sum_probs=126.9

Q ss_pred             HHHHHHHHhccccCccccccHHHHHHHHHHHHHHhhcCc-----hhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHH
Q 015851          159 LSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENS-----SIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRT  233 (399)
Q Consensus       159 i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~-----~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~  233 (399)
                      ....++.+.+.++        .++..|...++-.....+     ...+.-....++..+...+.+.+..+|..|+.+|+.
T Consensus       236 Y~~A~~~lsD~~e--------~VR~aAvqlv~v~gn~~p~~~e~e~~e~kl~D~aF~~vC~~v~D~sl~VRV~AaK~lG~  307 (823)
T KOG2259|consen  236 YSRAVKHLSDDYE--------DVRKAAVQLVSVWGNRCPAPLERESEEEKLKDAAFSSVCRAVRDRSLSVRVEAAKALGE  307 (823)
T ss_pred             HHHHHHHhcchHH--------HHHHHHHHHHHHHHhcCCCcccchhhhhhhHHHHHHHHHHHHhcCceeeeehHHHHhch
Confidence            4556667776665        777777555554443221     111111223467778888889999999999999987


Q ss_pred             hhcCChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHh--h-----------cCChhHHHHHHHCCCcHHHHHhh
Q 015851          234 LAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNL--V-----------HSSPNIKKEVLAAGALQPVIGLL  300 (399)
Q Consensus       234 L~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l--~-----------~~~~~~~~~~~~~~~l~~L~~lL  300 (399)
                      +-.-.++...+-.+...+..+-..-     ...+......++-  +           ...+.....++.+|+-..++.-|
T Consensus       308 ~~~vSee~i~QTLdKKlms~lRRkr-----~ahkrpk~l~s~GewSsGk~~~advpsee~d~~~~siI~sGACGA~VhGl  382 (823)
T KOG2259|consen  308 FEQVSEEIIQQTLDKKLMSRLRRKR-----TAHKRPKALYSSGEWSSGKEWNADVPSEEDDEEEESIIPSGACGALVHGL  382 (823)
T ss_pred             HHHhHHHHHHHHHHHHHhhhhhhhh-----hcccchHHHHhcCCcccCccccccCchhhccccccccccccccceeeeec
Confidence            7764444444444432222111100     0000111111111  0           00122335577788888888888


Q ss_pred             cCCChHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhccCCC--CcchhHHHHHhh
Q 015851          301 SSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQVITV--SVLPAILIFIII  378 (399)
Q Consensus       301 ~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~--~~~~~~~~~~~~  378 (399)
                      ...=.+||.+|+..++.|+...|.-...     .+..|++++++....||..|..+|..|+.+..-  ..++.++..+..
T Consensus       383 EDEf~EVR~AAV~Sl~~La~ssP~FA~~-----aldfLvDMfNDE~~~VRL~ai~aL~~Is~~l~i~eeql~~il~~L~D  457 (823)
T KOG2259|consen  383 EDEFYEVRRAAVASLCSLATSSPGFAVR-----ALDFLVDMFNDEIEVVRLKAIFALTMISVHLAIREEQLRQILESLED  457 (823)
T ss_pred             hHHHHHHHHHHHHHHHHHHcCCCCcHHH-----HHHHHHHHhccHHHHHHHHHHHHHHHHHHHheecHHHHHHHHHHHHh
Confidence            7777799999999999999766654332     367899999999999999999999999987553  255555555554


Q ss_pred             ccccH
Q 015851          379 NECQL  383 (399)
Q Consensus       379 ~~~~~  383 (399)
                      .+..+
T Consensus       458 ~s~dv  462 (823)
T KOG2259|consen  458 RSVDV  462 (823)
T ss_pred             cCHHH
Confidence            44444

>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]

Probab=97.31  E-value=0.062  Score=53.69  Aligned_cols=228  Identities=15%  Similarity=0.126  Sum_probs=142.9

Q ss_pred             hhHHHHHHHHHHHHHHcCC-hhHHHHHHhCCChHHHHhcccCCCCcccccCCCcchHHHHHHHHHHHHHhcCChhhHHHH
Q 015851           75 ADRAAAKRATHVLAELAKN-EEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLI  153 (399)
Q Consensus        75 ~~~~~~~~a~~~L~~l~~~-~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~i  153 (399)
                      +-+....+|.+++...+.. +.+.. +.+ -++...+..+.-+.+           |-++..|+++++..+...-...  
T Consensus       462 e~P~Ll~Ra~~~i~~fs~~~~~~~~-~~~-~fl~~~v~~l~~~~~-----------~~~ki~a~~~~~~~~~~~vl~~--  526 (1005)
T KOG2274|consen  462 ESPFLLLRAFLTISKFSSSTVINPQ-LLQ-HFLNATVNALTMDVP-----------PPVKISAVRAFCGYCKVKVLLS--  526 (1005)
T ss_pred             cCHHHHHHHHHHHHHHHhhhccchh-HHH-HHHHHHHHhhccCCC-----------CchhHHHHHHHHhccCceeccc--
Confidence            3344455888888866553 22211 111 123333444433222           1466677777777762211111  


Q ss_pred             HhcCcHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhh--cCCCHHHHHHHHHHH
Q 015851          154 VDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELL--EFTDTKVQRAAAGAL  231 (399)
Q Consensus       154 ~~~~~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll--~~~~~~v~~~a~~~L  231 (399)
                      ...+++..|+++....++        ++....+.+|+..+..++.... ..+....|.++.+.  .+++|.+...+-.++
T Consensus       527 ~~p~ild~L~qlas~~s~--------evl~llmE~Ls~vv~~dpef~a-s~~skI~P~~i~lF~k~s~DP~V~~~~qd~f  597 (1005)
T KOG2274|consen  527 LQPMILDGLLQLASKSSD--------EVLVLLMEALSSVVKLDPEFAA-SMESKICPLTINLFLKYSEDPQVASLAQDLF  597 (1005)
T ss_pred             cchHHHHHHHHHcccccH--------HHHHHHHHHHHHHhccChhhhh-hhhcchhHHHHHHHHHhcCCchHHHHHHHHH
Confidence            123466667777766666        7888888999999977776443 34456677776664  346687877788888


Q ss_pred             HHhhcCChhhHHHHHhcCCHHHHHHhhcCCC----HHHHHHHHHHHHHhhcCChhHHHHHHHCCCcHHHHHhh-cCCChH
Q 015851          232 RTLAFKNDENKNQIVECNALPTLILMLRSED----SAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLL-SSCCSE  306 (399)
Q Consensus       232 ~~L~~~~~~~~~~~~~~~~~~~L~~ll~~~~----~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL-~~~~~~  306 (399)
                      -.|+. ...+...+. ...+|.+++.|..+.    .....-++..|..+.+..+.-....+-.-+++++.+.. .+.+..
T Consensus       598 ~el~q-~~~~~g~m~-e~~iPslisil~~~~~~~~~~l~~~aidvLttvvr~tp~pL~~~l~~~~FpaVak~tlHsdD~~  675 (1005)
T KOG2274|consen  598 EELLQ-IAANYGPMQ-ERLIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSPLPNLLICYAFPAVAKITLHSDDHE  675 (1005)
T ss_pred             HHHHH-HHHhhcchH-HHHHHHHHHHHcCcccccCchhhHHHHHHHHHHHhcCCCCccHHHHHHHhHHhHhheeecCChH
Confidence            88886 333333333 347999999998765    67788888888888776555444444555777777774 567778


Q ss_pred             HHHHHHHHHHHhhccChhhHHH
Q 015851          307 SQREAALLLGQFAATDSDCKVH  328 (399)
Q Consensus       307 v~~~a~~~L~~l~~~~~~~~~~  328 (399)
                      ...++..||..+.+.+.+....
T Consensus       676 tlQ~~~EcLra~Is~~~eq~~t  697 (1005)
T KOG2274|consen  676 TLQNATECLRALISVTLEQLLT  697 (1005)
T ss_pred             HHHhHHHHHHHHHhcCHHHHHh
Confidence            8888999999888765544333

>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]

Probab=97.24  E-value=0.11  Score=53.04  Aligned_cols=270  Identities=14%  Similarity=0.123  Sum_probs=147.6

Q ss_pred             HhhhhhhHHHHhhhhhcchhhhHHHHHHHHHHHHHHcCC-h-hHHHHHHhCCChHHHHhcccCCCCcccccCCCcchHHH
Q 015851           55 LLSEVSAQVNVLNTTFSWLEADRAAAKRATHVLAELAKN-E-EVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEV  132 (399)
Q Consensus        55 ~~~~~~~~~~~L~~~l~~~~~~~~~~~~a~~~L~~l~~~-~-~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~~  132 (399)
                      ....+..+++.|.+.+  .+.|..+|-.|+..++.++.. | +..+.     .+...++++.-.++.           ..
T Consensus       335 v~eivE~vie~Lls~l--~d~dt~VrWSaAKg~grvt~rlp~~Lad~-----vi~svid~~~p~e~~-----------~a  396 (1133)
T KOG1943|consen  335 VPEIVEFVIEHLLSAL--SDTDTVVRWSAAKGLGRVTSRLPPELADQ-----VIGSVIDLFNPAEDD-----------SA  396 (1133)
T ss_pred             cHHHHHHHHHHHHHhc--cCCcchhhHHHHHHHHHHHccCcHHHHHH-----HHHHHHHhcCcCCch-----------hH
Confidence            3456677777777776  556777899999999999985 5 22222     344455544432221           44


Q ss_pred             HHHHHHHHHHhc-CChhhHHHHHhcCcHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhhcCchhHHHHHhcCChHH
Q 015851          133 EKGSAFALGLLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPP  211 (399)
Q Consensus       133 ~~~a~~~L~~l~-~~~~~~~~i~~~~~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~  211 (399)
                      -..++-+|+.++ ..--.-..+.  ..+|.+++-+.-...-........++..+|.++|.+++........-......+.
T Consensus       397 WHgacLaLAELA~rGlLlps~l~--dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~~L~s~  474 (1133)
T KOG1943|consen  397 WHGACLALAELALRGLLLPSLLE--DVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQSLASA  474 (1133)
T ss_pred             HHHHHHHHHHHHhcCCcchHHHH--HHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHHHHHHH
Confidence            558899999999 4322222221  2456666555433221111111278999999999999765543211111222222


Q ss_pred             -HHHhhcCCCHHHHHHHHHHHHHhhcCChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHHC
Q 015851          212 -LVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAA  290 (399)
Q Consensus       212 -L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~  290 (399)
                       +...+-+.+..+|+.|..++-...-.....      ..+++ |+...+.-.-..+.++-..+..-....+..+..+   
T Consensus       475 LL~~AlFDrevncRRAAsAAlqE~VGR~~n~------p~Gi~-Lis~~dy~sV~~rsNcy~~l~~~ia~~~~y~~~~---  544 (1133)
T KOG1943|consen  475 LLIVALFDREVNCRRAASAALQENVGRQGNF------PHGIS-LISTIDYFSVTNRSNCYLDLCVSIAEFSGYREPV---  544 (1133)
T ss_pred             HHHHHhcCchhhHhHHHHHHHHHHhccCCCC------CCchh-hhhhcchhhhhhhhhHHHHHhHHHHhhhhHHHHH---
Confidence             223344566788998888876555311110      11222 2222222222334444444443333334333333   


Q ss_pred             CCcHHHHHh-hcCCChHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHh
Q 015851          291 GALQPVIGL-LSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRL  360 (399)
Q Consensus       291 ~~l~~L~~l-L~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l  360 (399)
                        ++.++.. +.+-+..+++.++++|.+++...+    +....+.++++++..-+++...+..+..+.+.+
T Consensus       545 --f~~L~t~Kv~HWd~~irelaa~aL~~Ls~~~p----k~~a~~~L~~lld~~ls~~~~~r~g~~la~~ev  609 (1133)
T KOG1943|consen  545 --FNHLLTKKVCHWDVKIRELAAYALHKLSLTEP----KYLADYVLPPLLDSTLSKDASMRHGVFLAAGEV  609 (1133)
T ss_pred             --HHHHHhcccccccHHHHHHHHHHHHHHHHhhH----HhhcccchhhhhhhhcCCChHHhhhhHHHHHHH
Confidence              3333333 556678899999999999864333    344556677777777777777776554444433

>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region

Probab=97.20  E-value=0.0033  Score=45.89  Aligned_cols=91  Identities=15%  Similarity=0.110  Sum_probs=65.0

Q ss_pred             HHHHHHHHHHhhcCChhHHHHHHHCCCcHHHHHhhcCCChHHHHHHHHHHHHhhccChhhHHHHHh--cCCHHHHHHhhC
Q 015851          266 HYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQ--RGAVRPLIEMLQ  343 (399)
Q Consensus       266 ~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~--~g~v~~L~~ll~  343 (399)
                      |..++.+|..++..-+.. ..-.-..++++++..+.+.++.+|..||.+|.|++..   .+..+..  ..+++.|.+++.
T Consensus         3 R~ggli~Laa~ai~l~~~-~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~---~~~~~l~~f~~IF~~L~kl~~   78 (97)
T PF12755_consen    3 RKGGLIGLAAVAIALGKD-ISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKV---ARGEILPYFNEIFDALCKLSA   78 (97)
T ss_pred             hhHHHHHHHHHHHHchHh-HHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHc
Confidence            556677777776543333 2222345789999999999999999999999999853   2233332  457889999999


Q ss_pred             CCCHHHHHHHHHHHHHhh
Q 015851          344 SPDVQLREMSAFALGRLA  361 (399)
Q Consensus       344 ~~~~~v~~~a~~~L~~l~  361 (399)
                      ++++.|+..| ..|-++-
T Consensus        79 D~d~~Vr~~a-~~Ld~ll   95 (97)
T PF12755_consen   79 DPDENVRSAA-ELLDRLL   95 (97)
T ss_pred             CCchhHHHHH-HHHHHHh
Confidence            9999998776 5555443

>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D

Probab=97.20  E-value=0.034  Score=51.54  Aligned_cols=266  Identities=17%  Similarity=0.134  Sum_probs=147.6

Q ss_pred             hhhHHHHHHHHHHHHHHcCChhHHHHHHhCCChHHHHhcccCCCCcccccCCCcchHHHHHHHHHHHHHhcCChhhHHHH
Q 015851           74 EADRAAAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLI  153 (399)
Q Consensus        74 ~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~i  153 (399)
                      +....+|..++--|+.-+.+++.+..+..+|.+..++..+.+....          +..-..++.++.-++.+......+
T Consensus        33 ~~~~s~Rr~sll~La~K~~~~~Fr~~~ra~g~~~~l~~~l~~~~~d----------~~~~l~~a~i~~~l~~d~~~~~l~  102 (361)
T PF07814_consen   33 SSSSSVRRSSLLELASKCADPQFRRQFRAHGLVKRLFKALSDAPDD----------DILALATAAILYVLSRDGLNMHLL  102 (361)
T ss_pred             CCCccHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHHHHhccccch----------HHHHHHHHHHHHHHccCCcchhhh
Confidence            4455789999999999999999999999999999999999655441          112223344444555555555555


Q ss_pred             HhcCcHHHHHHHHhccc--cCccccccHHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhh---------cCCCHH
Q 015851          154 VDNGALSHLVNLLKRHM--DSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELL---------EFTDTK  222 (399)
Q Consensus       154 ~~~~~i~~L~~~L~~~~--~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll---------~~~~~~  222 (399)
                      .+.+....++.++....  +...     +....-..   +++.    ..+     ..+..+...+         ......
T Consensus       103 ~~~~~~~ll~~Ll~~~~~~~~~~-----~~~~~~~~---~lsk----~~~-----~~~~~~~~~~~~~~~~~~~~~~~ls  165 (361)
T PF07814_consen  103 LDRDSLRLLLKLLKVDKSLDVPS-----DSDSSRKK---NLSK----VQQ-----KSRSLCKELLSSGSSWKSPKPPELS  165 (361)
T ss_pred             hchhHHHHHHHHhcccccccccc-----chhhhhhh---hhhH----HHH-----HHHHHHHHHHhccccccccCCcccc
Confidence            56666777788887211  1100     00000000   0000    000     0011111111         012233


Q ss_pred             HHHHHHHHHHHhh--------------cCChhhHHHHHhcCCHHHHHHhhcC----C------------CHHHHHHHHHH
Q 015851          223 VQRAAAGALRTLA--------------FKNDENKNQIVECNALPTLILMLRS----E------------DSAIHYEAVGV  272 (399)
Q Consensus       223 v~~~a~~~L~~L~--------------~~~~~~~~~~~~~~~~~~L~~ll~~----~------------~~~v~~~a~~~  272 (399)
                      -+..|+.++-.++              ...+..++++...|++..++..+.+    .            +......++++
T Consensus       166 p~~lall~le~l~~~~~~~~~~~~t~~~~~~~fkeelr~lg~Ld~iv~~l~~~~~~~~~~~~~~~~~~~~l~~l~~cl~I  245 (361)
T PF07814_consen  166 PQTLALLALESLVRSLREAGDLSETSSRAGEWFKEELRELGGLDHIVDILKDCHSSLSSADAWDDPSLQSLIDLERCLSI  245 (361)
T ss_pred             cccHHHHHHHHHHHHHhhcccchhhhhhccccchhhhhhHHHHHHHHHHHHHhhhhhhhhhhccccchHHHHHHHHHHHH
Confidence            4445555555552              1123456778888899998888751    1            11345668888


Q ss_pred             HHHhhcCChhHHHHHHHC--CCcHHHH-HhhcC---CChHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHhh----
Q 015851          273 IGNLVHSSPNIKKEVLAA--GALQPVI-GLLSS---CCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEML----  342 (399)
Q Consensus       273 L~~l~~~~~~~~~~~~~~--~~l~~L~-~lL~~---~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~v~~L~~ll----  342 (399)
                      |-+.+..++.+.......  +.+..+. .++..   ........++..+.|++..++.....+...++...+..+.    
T Consensus       246 LEs~T~~~~~nq~~l~~~~~~~l~~~~~~l~~~~~~~~~~~l~~~lrlllNlTn~n~~~c~~~~s~~l~~~~~~i~~~~~  325 (361)
T PF07814_consen  246 LESVTFLSEENQSYLLSHRSSLLPQLLSTLLRQCDDQVIQLLLLALRLLLNLTNNNPSACEEFASPKLGQQLGLIVTSFF  325 (361)
T ss_pred             HHHHHhcCccchHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHeeeCCCCCccchHhhhhhHhccchHHHHHhhc
Confidence            888886666655555543  2233222 22322   2234467788999999988876666665543222211111    


Q ss_pred             ----------CCCCHHHHHHHHHHHHHhhccCCC
Q 015851          343 ----------QSPDVQLREMSAFALGRLAQVITV  366 (399)
Q Consensus       343 ----------~~~~~~v~~~a~~~L~~l~~~~~~  366 (399)
                                .....++.-.+..+|.|++++++.
T Consensus       326 ~~~~~~~~~~~~~~~D~~IL~Lg~LINL~E~s~~  359 (361)
T PF07814_consen  326 CVLSLPNYVPEESSFDILILALGLLINLVEHSEA  359 (361)
T ss_pred             ccccccccccccccchHHHHHHHhHHHheeeCcc
Confidence                      123455667788888888877653

melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants.

>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]

Probab=97.19  E-value=0.044  Score=53.50  Aligned_cols=141  Identities=22%  Similarity=0.229  Sum_probs=99.7

Q ss_pred             CChHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhhHHHHHhcCCHHHHHHh-hcCCCHHHHHHHHHHHHHhhcCChhHHH
Q 015851          207 GGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILM-LRSEDSAIHYEAVGVIGNLVHSSPNIKK  285 (399)
Q Consensus       207 ~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~L~~l-l~~~~~~v~~~a~~~L~~l~~~~~~~~~  285 (399)
                      ++=+.+-+++.+.+|-+|.....+++---.+...       .+++..|+.. .++.+.+||+.|.-+|+-++..+++.  
T Consensus       519 ~Ad~lI~el~~dkdpilR~~Gm~t~alAy~GTgn-------nkair~lLh~aVsD~nDDVrRaAVialGFVl~~dp~~--  589 (929)
T KOG2062|consen  519 DADPLIKELLRDKDPILRYGGMYTLALAYVGTGN-------NKAIRRLLHVAVSDVNDDVRRAAVIALGFVLFRDPEQ--  589 (929)
T ss_pred             hhHHHHHHHhcCCchhhhhhhHHHHHHHHhccCc-------hhhHHHhhcccccccchHHHHHHHHHheeeEecChhh--
Confidence            4445667778888888887766655422221111       2456667766 56779999999999999998776654  


Q ss_pred             HHHHCCCcHHHHHhhc-CCChHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhccC
Q 015851          286 EVLAAGALQPVIGLLS-SCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQVI  364 (399)
Q Consensus       286 ~~~~~~~l~~L~~lL~-~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~  364 (399)
                             ++..+++|. +-++.||-.++.+|+-.|++. ..+.      ++..|-.++.++..-||+.|+-++..+....
T Consensus       590 -------~~s~V~lLses~N~HVRyGaA~ALGIaCAGt-G~~e------Ai~lLepl~~D~~~fVRQgAlIa~amIm~Q~  655 (929)
T KOG2062|consen  590 -------LPSTVSLLSESYNPHVRYGAAMALGIACAGT-GLKE------AINLLEPLTSDPVDFVRQGALIALAMIMIQQ  655 (929)
T ss_pred             -------chHHHHHHhhhcChhhhhhHHHHHhhhhcCC-CcHH------HHHHHhhhhcChHHHHHHHHHHHHHHHHHhc
Confidence                   566777775 678899999999999988753 2222      2455666777888889999999999887666


Q ss_pred             CCCcch
Q 015851          365 TVSVLP  370 (399)
Q Consensus       365 ~~~~~~  370 (399)
                      .+...|
T Consensus       656 t~~~~p  661 (929)
T KOG2062|consen  656 TEQLCP  661 (929)
T ss_pred             ccccCc
Confidence            554333

>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4

Probab=97.17  E-value=0.093  Score=53.19  Aligned_cols=255  Identities=17%  Similarity=0.191  Sum_probs=154.1

Q ss_pred             HHhCCChHHHHhcccCCCCcccccCCCcchHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHHHhccccCccccccH
Q 015851          100 IVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVN  179 (399)
Q Consensus       100 ~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~~~i~~L~~~L~~~~~~~~~~~~~  179 (399)
                      +.+.||+..++.++.+.....+       +.++....+..|...+.-+.+|+.+.+.|+++.|+..+...-.........
T Consensus       113 ~~~~gGL~~ll~~l~~~~~~~~-------~~~ll~~llkLL~~c~Kv~~NR~~Ll~~~al~~LL~~L~~~l~~~~~~~~~  185 (802)
T PF13764_consen  113 LAECGGLEVLLSRLDSIRDFSR-------GRELLQVLLKLLRYCCKVKVNRRALLELNALNRLLSVLNRALQANQNSSQA  185 (802)
T ss_pred             hhcCCCHHHHHHHHHhhccccC-------cHHHHHHHHHHHHHHHhhHHHHHHHHHcCCHHHHHHHHHHHHhCccccccc
Confidence            4478999999999987543211       236667788888888888999999999999999999986432111100001


Q ss_pred             HHHHHHHHHHHHHhhcCch--hH--HHHHhc--------CChHHHHHhhcCC----CHHHHHHHHHHHHHhhcCChhhHH
Q 015851          180 SVIRRAADAITNLAHENSS--IK--TRVRME--------GGIPPLVELLEFT----DTKVQRAAAGALRTLAFKNDENKN  243 (399)
Q Consensus       180 ~~~~~a~~~L~~l~~~~~~--~~--~~~~~~--------~~i~~L~~ll~~~----~~~v~~~a~~~L~~L~~~~~~~~~  243 (399)
                      ++.+..+.++..+......  ..  ......        .-+..+++.+.++    ++.+....+++|.+|+.++++..+
T Consensus       186 ~i~E~LL~IiE~ll~ea~~~~~~~~~~~~~~~~~~~~~~~~v~~lL~~l~s~~~r~~~~i~~~l~RiLP~Lt~G~~e~m~  265 (802)
T PF13764_consen  186 EIAEQLLEIIESLLSEANSSSSSESKSSSSLSGSEEQDKEQVEMLLERLNSPFVRSNPQILQALARILPFLTYGNEEKMD  265 (802)
T ss_pred             hHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccHHHHHHHHHHhcCccccCCHHHHHHHHHHhhHHhcCCHHHHH
Confidence            6667777776666632211  00  000111        1256666666653    588999999999999998888777


Q ss_pred             HHHhcCCHHHHHHhhcCC---CHHHHHHHHHHHHHhhcCC------hhHHHHHHHCCCcHHHHHhhcCCC--------hH
Q 015851          244 QIVECNALPTLILMLRSE---DSAIHYEAVGVIGNLVHSS------PNIKKEVLAAGALQPVIGLLSSCC--------SE  306 (399)
Q Consensus       244 ~~~~~~~~~~L~~ll~~~---~~~v~~~a~~~L~~l~~~~------~~~~~~~~~~~~l~~L~~lL~~~~--------~~  306 (399)
                      .+++.  +...+++=.-+   .++- ...+.+++.++.+-      ...+..+++.|+++..+.+|...-        ++
T Consensus       266 ~Lv~~--F~p~l~f~~~D~~~~~~~-~~~Le~F~~i~~~I~~~~~G~~LK~~Il~~GIv~~a~~YL~~~~P~~~~~~s~e  342 (802)
T PF13764_consen  266 ALVEH--FKPYLDFDKFDEEHSPDE-QFKLECFCEIAEGIPNNSNGNRLKDKILESGIVQDAIDYLLKHFPSLKNTDSPE  342 (802)
T ss_pred             HHHHH--HHHhcChhhcccccCchH-HHHHHHHHHHHhcCCCCCchHHHHHHHHHhhHHHHHHHHHHHhCcccccCCCHH
Confidence            77765  23333221111   1111 12245555555321      356788899999999998886322        22


Q ss_pred             H--------HHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHhhC-CCCHHHHHHHHHHHHHhhccCC
Q 015851          307 S--------QREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQ-SPDVQLREMSAFALGRLAQVIT  365 (399)
Q Consensus       307 v--------~~~a~~~L~~l~~~~~~~~~~l~~~g~v~~L~~ll~-~~~~~v~~~a~~~L~~l~~~~~  365 (399)
                      -        ...++..|.-++.+....+.. ...++++.+-.+=+ +.+..+=..|-.+|-.++.+..
T Consensus       343 Wk~~l~~psLp~iL~lL~GLa~gh~~tQ~~-~~~~~l~~lH~LEqvss~~~IGslAEnlLeal~~~~~  409 (802)
T PF13764_consen  343 WKEFLSRPSLPYILRLLRGLARGHEPTQLL-IAEQLLPLLHRLEQVSSEEHIGSLAENLLEALAENED  409 (802)
T ss_pred             HHHHhcCCcHHHHHHHHHHHHhcCHHHHHH-HHhhHHHHHHHhhcCCCccchHHHHHHHHHHHhcChh
Confidence            2        233667777777654444333 55566655544443 2345555556666666666443

>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1

Probab=97.13  E-value=0.0051  Score=50.91  Aligned_cols=97  Identities=16%  Similarity=0.206  Sum_probs=76.3

Q ss_pred             CHHHHHHHHHHHHHhhcCChhHHHHHHHCCCcHHHHHhhcCCChHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHh
Q 015851          262 DSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEM  341 (399)
Q Consensus       262 ~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~v~~L~~l  341 (399)
                      ++.+|.+++.+++.++...+...     ...++.+...|.++++.+|..|+.+|..|...+...    ....++..++.+
T Consensus         1 ~~~vR~n~i~~l~DL~~r~~~~v-----e~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik----~k~~l~~~~l~~   71 (178)
T PF12717_consen    1 DPSVRNNAIIALGDLCIRYPNLV-----EPYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMIK----VKGQLFSRILKL   71 (178)
T ss_pred             CHHHHHHHHHHHHHHHHhCcHHH-----HhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCcee----ehhhhhHHHHHH
Confidence            57899999999999997655443     235889999999999999999999999998643211    112223677788


Q ss_pred             hCCCCHHHHHHHHHHHHHhhcc-CCCC
Q 015851          342 LQSPDVQLREMSAFALGRLAQV-ITVS  367 (399)
Q Consensus       342 l~~~~~~v~~~a~~~L~~l~~~-~~~~  367 (399)
                      +.+++++|+..|..++..+... .++.
T Consensus        72 l~D~~~~Ir~~A~~~~~e~~~~~~~~~   98 (178)
T PF12717_consen   72 LVDENPEIRSLARSFFSELLKKRNPNI   98 (178)
T ss_pred             HcCCCHHHHHHHHHHHHHHHHhccchH
Confidence            8999999999999999999988 5543

>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.13  E-value=0.066  Score=52.70  Aligned_cols=209  Identities=14%  Similarity=0.072  Sum_probs=140.9

Q ss_pred             HHHhcccCCCCcccccCCCcchHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHHHhccccCccccccHHHHHHHHH
Q 015851          108 ALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAAD  187 (399)
Q Consensus       108 ~L~~lL~~~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~~~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~  187 (399)
                      -|.++|++....           ..+...-++++.++.+.+...      .++.+++.+-+.+.        ++++.+--
T Consensus        39 dL~~lLdSnkd~-----------~KleAmKRIia~iA~G~dvS~------~Fp~VVKNVaskn~--------EVKkLVyv   93 (968)
T KOG1060|consen   39 DLKQLLDSNKDS-----------LKLEAMKRIIALIAKGKDVSL------LFPAVVKNVASKNI--------EVKKLVYV   93 (968)
T ss_pred             HHHHHHhccccH-----------HHHHHHHHHHHHHhcCCcHHH------HHHHHHHHhhccCH--------HHHHHHHH
Confidence            356777765542           444455567777776655433      67888888877766        77777666


Q ss_pred             HHHHHhhcCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhhHHHHHhcCCHHHHHHhhcCCCHHHHH
Q 015851          188 AITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHY  267 (399)
Q Consensus       188 ~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~  267 (399)
                      -|...+...+..     ..--|..+-+-|+++|+.+|..|+++|..+=.  +..     ..=.+-.+-++..+..+-||.
T Consensus        94 YLlrYAEeqpdL-----ALLSIntfQk~L~DpN~LiRasALRvlSsIRv--p~I-----aPI~llAIk~~~~D~s~yVRk  161 (968)
T KOG1060|consen   94 YLLRYAEEQPDL-----ALLSINTFQKALKDPNQLIRASALRVLSSIRV--PMI-----APIMLLAIKKAVTDPSPYVRK  161 (968)
T ss_pred             HHHHHhhcCCCc-----eeeeHHHHHhhhcCCcHHHHHHHHHHHHhcch--hhH-----HHHHHHHHHHHhcCCcHHHHH
Confidence            666666544431     12336777788999999999999888876654  111     110122233455678899999


Q ss_pred             HHHHHHHHhhcCChhHHHHHHHCCCcHHHHHhhcCCChHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHhhCCCCH
Q 015851          268 EAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDV  347 (399)
Q Consensus       268 ~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~v~~L~~ll~~~~~  347 (399)
                      .|+.+|-.+-.-+++....     .+..+-.+|...++.|...|+.+...+|   |+..+.+..+  ...|++++.+-+.
T Consensus       162 ~AA~AIpKLYsLd~e~k~q-----L~e~I~~LLaD~splVvgsAv~AF~evC---PerldLIHkn--yrklC~ll~dvde  231 (968)
T KOG1060|consen  162 TAAHAIPKLYSLDPEQKDQ-----LEEVIKKLLADRSPLVVGSAVMAFEEVC---PERLDLIHKN--YRKLCRLLPDVDE  231 (968)
T ss_pred             HHHHhhHHHhcCChhhHHH-----HHHHHHHHhcCCCCcchhHHHHHHHHhc---hhHHHHhhHH--HHHHHhhccchhh
Confidence            9999999997655655443     3566677788889999999988888876   5665655554  6788888876444


Q ss_pred             HHHHHHHHHHHHhhcc
Q 015851          348 QLREMSAFALGRLAQV  363 (399)
Q Consensus       348 ~v~~~a~~~L~~l~~~  363 (399)
                      ==+.....+|...|++
T Consensus       232 WgQvvlI~mL~RYAR~  247 (968)
T KOG1060|consen  232 WGQVVLINMLTRYARH  247 (968)
T ss_pred             hhHHHHHHHHHHHHHh
Confidence            4455677777777754

>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []

Probab=97.11  E-value=0.06  Score=48.68  Aligned_cols=181  Identities=21%  Similarity=0.184  Sum_probs=108.7

Q ss_pred             HHHHHHHHHHHHHhhcCchhHHHHHh--cCChHHHHHhhcCCCHHHHHHHHHHHHHhhcC--ChhhHHHHHhcCCHHHHH
Q 015851          180 SVIRRAADAITNLAHENSSIKTRVRM--EGGIPPLVELLEFTDTKVQRAAAGALRTLAFK--NDENKNQIVECNALPTLI  255 (399)
Q Consensus       180 ~~~~~a~~~L~~l~~~~~~~~~~~~~--~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~--~~~~~~~~~~~~~~~~L~  255 (399)
                      ..++.++..+.++....... ..+..  ...+..+...++.+..+-+..|++++.-++..  .......+.+. ..|.|.
T Consensus        58 ~~Re~aL~~l~~~l~~~~~~-d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~~ei~~~-~~~~L~  135 (309)
T PF05004_consen   58 STREAALEALIRALSSRYLP-DFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGEDSEEIFEE-LKPVLK  135 (309)
T ss_pred             HHHHHHHHHHHHHHHhcccH-HHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccHHHHHHH-HHHHHH
Confidence            67777888777777543321 22221  23567777888887776777788887777653  22444555553 678888


Q ss_pred             HhhcCC--CHHHHHHHHHHHHHhhc---CChhHHHHHHHCCCcHHHHH--hhcC----------CChHHHHHHHHHHHHh
Q 015851          256 LMLRSE--DSAIHYEAVGVIGNLVH---SSPNIKKEVLAAGALQPVIG--LLSS----------CCSESQREAALLLGQF  318 (399)
Q Consensus       256 ~ll~~~--~~~v~~~a~~~L~~l~~---~~~~~~~~~~~~~~l~~L~~--lL~~----------~~~~v~~~a~~~L~~l  318 (399)
                      +.+.+.  ...+|..++.+|+-++.   ..+......+  ..+..+..  ..+.          +++.+...|+.+.+-|
T Consensus       136 ~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~--~~le~if~~~~~~~~~~~~~~~~~~~~~l~~aAL~aW~lL  213 (309)
T PF05004_consen  136 RILTDSSASPKARAACLEALAICTFVGGSDEEETEELM--ESLESIFLLSILKSDGNAPVVAAEDDAALVAAALSAWALL  213 (309)
T ss_pred             HHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHH--HHHHHHHHHHhcCcCCCcccccCCCccHHHHHHHHHHHHH
Confidence            888765  34677777777776653   2222222111  12331211  1211          1245777777666655


Q ss_pred             hccChhh-HHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhccCC
Q 015851          319 AATDSDC-KVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQVIT  365 (399)
Q Consensus       319 ~~~~~~~-~~~l~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~  365 (399)
                      ...-+.. ..... ...+|.|..+|.+++..||.+|..+|.-|.+...
T Consensus       214 lt~~~~~~~~~~~-~~~~~~l~~lL~s~d~~VRiAAGEaiAll~E~~~  260 (309)
T PF05004_consen  214 LTTLPDSKLEDLL-EEALPALSELLDSDDVDVRIAAGEAIALLYELAR  260 (309)
T ss_pred             HhcCCHHHHHHHH-HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhh
Confidence            5443332 22222 3358999999999999999999999887765443

The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].

>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.09  E-value=0.16  Score=49.46  Aligned_cols=105  Identities=17%  Similarity=0.218  Sum_probs=78.5

Q ss_pred             CChHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhhHHHHHhcCCHHHHHHhhc-CCCHHHHHHHHHHHHHhhcCChhHHH
Q 015851          207 GGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLR-SEDSAIHYEAVGVIGNLVHSSPNIKK  285 (399)
Q Consensus       207 ~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~L~~ll~-~~~~~v~~~a~~~L~~l~~~~~~~~~  285 (399)
                      ..+..|-.++.+..+.+|.-++..+..|++ .......+..+  ...++..|+ ..|..+|..|+..|..+|.  .++.+
T Consensus       329 ~~~~~Lg~fls~rE~NiRYLaLEsm~~L~s-s~~s~davK~h--~d~Ii~sLkterDvSirrravDLLY~mcD--~~Nak  403 (938)
T KOG1077|consen  329 RAVNQLGQFLSHRETNIRYLALESMCKLAS-SEFSIDAVKKH--QDTIINSLKTERDVSIRRRAVDLLYAMCD--VSNAK  403 (938)
T ss_pred             HHHHHHHHHhhcccccchhhhHHHHHHHHh-ccchHHHHHHH--HHHHHHHhccccchHHHHHHHHHHHHHhc--hhhHH
Confidence            346667777888888888888888888887 33334444444  777888888 6789999999999999984  33433


Q ss_pred             HHHHCCCcHHHHHhhcCCChHHHHHHHHHHHHhhcc
Q 015851          286 EVLAAGALQPVIGLLSSCCSESQREAALLLGQFAAT  321 (399)
Q Consensus       286 ~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~  321 (399)
                      .     ++..++++|.+.++.++++.+.=+.-+++.
T Consensus       404 ~-----IV~elLqYL~tAd~sireeivlKvAILaEK  434 (938)
T KOG1077|consen  404 Q-----IVAELLQYLETADYSIREEIVLKVAILAEK  434 (938)
T ss_pred             H-----HHHHHHHHHhhcchHHHHHHHHHHHHHHHH
Confidence            3     367888899889999998877766666654

>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region

Probab=97.08  E-value=0.0036  Score=45.74  Aligned_cols=90  Identities=17%  Similarity=0.259  Sum_probs=64.3

Q ss_pred             HHHHHHHHHHhhcCChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHH--HCCCcHHHHHhhc
Q 015851          224 QRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVL--AAGALQPVIGLLS  301 (399)
Q Consensus       224 ~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~--~~~~l~~L~~lL~  301 (399)
                      |..++.+|...+.+-+.......+. +++.++..+.+++..||..||.+|.|++...   +..++  -..+++.|.+++.
T Consensus         3 R~ggli~Laa~ai~l~~~~~~~l~~-Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~---~~~~l~~f~~IF~~L~kl~~   78 (97)
T PF12755_consen    3 RKGGLIGLAAVAIALGKDISKYLDE-ILPPVLKCFDDQDSRVRYYACEALYNISKVA---RGEILPYFNEIFDALCKLSA   78 (97)
T ss_pred             hhHHHHHHHHHHHHchHhHHHHHHH-HHHHHHHHcCCCcHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHc
Confidence            4556677777766544444444443 8899999999999999999999999998542   23333  2467788888888


Q ss_pred             CCChHHHHHHHHHHHHh
Q 015851          302 SCCSESQREAALLLGQF  318 (399)
Q Consensus       302 ~~~~~v~~~a~~~L~~l  318 (399)
                      .+++.|+..| ..|.++
T Consensus        79 D~d~~Vr~~a-~~Ld~l   94 (97)
T PF12755_consen   79 DPDENVRSAA-ELLDRL   94 (97)
T ss_pred             CCchhHHHHH-HHHHHH
Confidence            8888877666 455544

>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]

Probab=97.07  E-value=0.03  Score=56.14  Aligned_cols=192  Identities=16%  Similarity=0.108  Sum_probs=130.2

Q ss_pred             cHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhhcC
Q 015851          158 ALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFK  237 (399)
Q Consensus       158 ~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~  237 (399)
                      ..+.++..+++...        +++....+.+..+-..++...........+|.+..+-....+.++....+.+..++..
T Consensus       438 llp~~~~~l~de~~--------~V~lnli~~ls~~~~v~~v~g~~~~s~slLp~i~el~~d~~wRvr~ail~~ip~la~q  509 (759)
T KOG0211|consen  438 LLPLLIGNLKDEDP--------IVRLNLIDKLSLLEEVNDVIGISTVSNSLLPAIVELAEDLLWRVRLAILEYIPQLALQ  509 (759)
T ss_pred             cChhhhhhcchhhH--------HHHHhhHHHHHHHHhccCcccchhhhhhhhhhhhhhccchhHHHHHHHHHHHHHHHHh
Confidence            45555556665554        6777777766666555554444566677888899888877899999999999988862


Q ss_pred             ChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHHCCCcHHHHHhhcCCChHHHHHHHHHHHH
Q 015851          238 NDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQ  317 (399)
Q Consensus       238 ~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~  317 (399)
                        .+ ..+.....-+.+...+.+..-+++..|+..+..++....   ..-.....++.++.....++...|...+.++.-
T Consensus       510 --~~-~~~~~~~~~~l~~~~l~d~v~~Ir~~aa~~l~~l~~~~G---~~w~~~~~i~k~L~~~~q~~y~~R~t~l~si~~  583 (759)
T KOG0211|consen  510 --LG-VEFFDEKLAELLRTWLPDHVYSIREAAARNLPALVETFG---SEWARLEEIPKLLAMDLQDNYLVRMTTLFSIHE  583 (759)
T ss_pred             --hh-hHHhhHHHHHHHHhhhhhhHHHHHHHHHHHhHHHHHHhC---cchhHHHhhHHHHHHhcCcccchhhHHHHHHHH
Confidence              22 233333344455555556667889999988888874322   111223457777777766677777777777775


Q ss_pred             hhccChhhHHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhccCCC
Q 015851          318 FAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQVITV  366 (399)
Q Consensus       318 l~~~~~~~~~~l~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~  366 (399)
                      ++   +..-..+....++|.+.++..++.+.||-+++..|..+...-..
T Consensus       584 la---~v~g~ei~~~~Llp~~~~l~~D~vanVR~nvak~L~~i~~~L~~  629 (759)
T KOG0211|consen  584 LA---EVLGQEITCEDLLPVFLDLVKDPVANVRINVAKHLPKILKLLDE  629 (759)
T ss_pred             HH---HHhccHHHHHHHhHHHHHhccCCchhhhhhHHHHHHHHHhhcch
Confidence            54   23334555566789999999999999999999999888765543

>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.07  E-value=0.021  Score=55.88  Aligned_cols=251  Identities=17%  Similarity=0.136  Sum_probs=152.1

Q ss_pred             hhHHHHHHHHHHHHHHcCC-hhHHHHHHhCCChHHHHhcccCCCCcccccCCCcchHHHHHHHHHHHHHhcCChhhHHHH
Q 015851           75 ADRAAAKRATHVLAELAKN-EEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLI  153 (399)
Q Consensus        75 ~~~~~~~~a~~~L~~l~~~-~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~i  153 (399)
                      .|.+.+.-.---+.+.+.. |+..     .++++.++.=..++++            .+|..|.+.++.+....- .   
T Consensus        61 ~dlelKKlvyLYl~nYa~~~P~~a-----~~avnt~~kD~~d~np------------~iR~lAlrtm~~l~v~~i-~---  119 (734)
T KOG1061|consen   61 RDLELKKLVYLYLMNYAKGKPDLA-----ILAVNTFLKDCEDPNP------------LIRALALRTMGCLRVDKI-T---  119 (734)
T ss_pred             CCchHHHHHHHHHHHhhccCchHH-----HhhhhhhhccCCCCCH------------HHHHHHhhceeeEeehHH-H---
Confidence            3444444444456666653 5432     3445555554444444            777777777776663221 1   


Q ss_pred             HhcCcHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHH
Q 015851          154 VDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRT  233 (399)
Q Consensus       154 ~~~~~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~  233 (399)
                        ..+..++...+++.+.        .++..+.....++-..++   ..+...|.++.|.+++.++++.+...|+.+|..
T Consensus       120 --ey~~~Pl~~~l~d~~~--------yvRktaa~~vakl~~~~~---~~~~~~gl~~~L~~ll~D~~p~VVAnAlaaL~e  186 (734)
T KOG1061|consen  120 --EYLCDPLLKCLKDDDP--------YVRKTAAVCVAKLFDIDP---DLVEDSGLVDALKDLLSDSNPMVVANALAALSE  186 (734)
T ss_pred             --HHHHHHHHHhccCCCh--------hHHHHHHHHHHHhhcCCh---hhccccchhHHHHHHhcCCCchHHHHHHHHHHH
Confidence              1246777777777766        777877777777775444   356678999999999999999999999999999


Q ss_pred             hhcCChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHHCCCcHHHHHhhcCCChHHHHHHHH
Q 015851          234 LAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAAL  313 (399)
Q Consensus       234 L~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~  313 (399)
                      +...+++..........+.   ++|..-+....+.-+.+|.+++...+..-..  ...++..+...|++.++.+...+..
T Consensus       187 I~e~~~~~~~~~l~~~~~~---~lL~al~ec~EW~qi~IL~~l~~y~p~d~~e--a~~i~~r~~p~Lqh~n~avvlsavK  261 (734)
T KOG1061|consen  187 IHESHPSVNLLELNPQLIN---KLLEALNECTEWGQIFILDCLAEYVPKDSRE--AEDICERLTPRLQHANSAVVLSAVK  261 (734)
T ss_pred             HHHhCCCCCcccccHHHHH---HHHHHHHHhhhhhHHHHHHHHHhcCCCCchh--HHHHHHHhhhhhccCCcceEeehHH
Confidence            9975443111111111222   2333333344444555555565433321111  1235777788888888888888888


Q ss_pred             HHHHhhccChhhHHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhccCCC
Q 015851          314 LLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQVITV  366 (399)
Q Consensus       314 ~L~~l~~~~~~~~~~l~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~  366 (399)
                      ++.++...-+. .....-...-++|+.++.+.. +++..|..-+.-+-...+.
T Consensus       262 v~l~~~~~~~~-~~~~~~~K~~~pl~tlls~~~-e~qyvaLrNi~lil~~~p~  312 (734)
T KOG1061|consen  262 VILQLVKYLKQ-VNELLFKKVAPPLVTLLSSES-EIQYVALRNINLILQKRPE  312 (734)
T ss_pred             HHHHHHHHHHH-HHHHHHHHhcccceeeecccc-hhhHHHHhhHHHHHHhChH
Confidence            88888754333 233333445677777776655 7777776666655555553

>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=97.04  E-value=0.0018  Score=48.63  Aligned_cols=72  Identities=19%  Similarity=0.276  Sum_probs=61.4

Q ss_pred             CChHHHHHhh-cCCCHHHHHHHHHHHHHhhcCChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhc
Q 015851          207 GGIPPLVELL-EFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVH  278 (399)
Q Consensus       207 ~~i~~L~~ll-~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~  278 (399)
                      ..+..|+.+| .+.++.+...||.-|+.++...|.++..+-+.|+=..++.++.+++++|+.+|+.++..+..
T Consensus        43 ~llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~  115 (119)
T PF11698_consen   43 ELLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLMV  115 (119)
T ss_dssp             HHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence            3467888888 44578889999999999999899998888888999999999999999999999999988763

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.

>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]

Probab=97.03  E-value=0.049  Score=54.32  Aligned_cols=157  Identities=10%  Similarity=0.088  Sum_probs=104.1

Q ss_pred             HHHHHHHHHhcCChhhHHHHHhcCcHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHH
Q 015851          134 KGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLV  213 (399)
Q Consensus       134 ~~a~~~L~~l~~~~~~~~~i~~~~~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~  213 (399)
                      ...-.++..++.+.+...      .++.+++.+...+.        ++++..-.-|.+.+..+|.-.  +   -.+..+.
T Consensus        38 dAmK~iIa~M~~G~dmss------Lf~dViK~~~trd~--------ElKrL~ylYl~~yak~~P~~~--l---LavNti~   98 (757)
T COG5096          38 DAMKKIIAQMSLGEDMSS------LFPDVIKNVATRDV--------ELKRLLYLYLERYAKLKPELA--L---LAVNTIQ   98 (757)
T ss_pred             HHHHHHHHHHhcCCChHH------HHHHHHHHHHhcCH--------HHHHHHHHHHHHHhccCHHHH--H---HHHHHHH
Confidence            344456677775444333      45566666663333        777766666777776555211  1   2356677


Q ss_pred             HhhcCCCHHHHHHHHHHHHHhhcCChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHHCCCc
Q 015851          214 ELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGAL  293 (399)
Q Consensus       214 ~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l  293 (399)
                      .=+.++|+.+|..|++++..+=.  ++    +.. .+++.+.+++.++++.||..|+-++.++-.-++   ...-+.|.+
T Consensus        99 kDl~d~N~~iR~~AlR~ls~l~~--~e----l~~-~~~~~ik~~l~d~~ayVRk~Aalav~kly~ld~---~l~~~~g~~  168 (757)
T COG5096          99 KDLQDPNEEIRGFALRTLSLLRV--KE----LLG-NIIDPIKKLLTDPHAYVRKTAALAVAKLYRLDK---DLYHELGLI  168 (757)
T ss_pred             hhccCCCHHHHHHHHHHHHhcCh--HH----HHH-HHHHHHHHHccCCcHHHHHHHHHHHHHHHhcCH---hhhhcccHH
Confidence            77888888888888888776653  22    222 256678888888888888888888888864333   334456677


Q ss_pred             HHHHHhhcCCChHHHHHHHHHHHHhh
Q 015851          294 QPVIGLLSSCCSESQREAALLLGQFA  319 (399)
Q Consensus       294 ~~L~~lL~~~~~~v~~~a~~~L~~l~  319 (399)
                      ..+..++.+.+|.+..+|..+|..+.
T Consensus       169 ~~l~~l~~D~dP~Vi~nAl~sl~~i~  194 (757)
T COG5096         169 DILKELVADSDPIVIANALASLAEID  194 (757)
T ss_pred             HHHHHHhhCCCchHHHHHHHHHHHhc
Confidence            77778888888888888888888775

>KOG0915 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.03  E-value=0.02  Score=60.05  Aligned_cols=202  Identities=17%  Similarity=0.180  Sum_probs=117.4

Q ss_pred             HHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhhHHHHHhcCCHHHHHHhhcCCC
Q 015851          183 RRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSED  262 (399)
Q Consensus       183 ~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~L~~ll~~~~  262 (399)
                      .-++.-++.++... .-+..-.-...||.|.++=-+++..++..-..+...|..+.......... .++.-|+.-|.+..
T Consensus       975 ~GaAfGf~~i~~~a-~~kl~p~l~kLIPrLyRY~yDP~~~Vq~aM~sIW~~Li~D~k~~vd~y~n-eIl~eLL~~lt~ke 1052 (1702)
T KOG0915|consen  975 KGAAFGFGAIAKQA-GEKLEPYLKKLIPRLYRYQYDPDKKVQDAMTSIWNALITDSKKVVDEYLN-EILDELLVNLTSKE 1052 (1702)
T ss_pred             cchhhchHHHHHHH-HHhhhhHHHHhhHHHhhhccCCcHHHHHHHHHHHHHhccChHHHHHHHHH-HHHHHHHHhccchh
Confidence            44555555555322 11112223467888888888889999887776666666532333333333 36677777777888


Q ss_pred             HHHHHHHHHHHHHhhcCChhHHHHHHH--CCCcHHHHHhhcCCChHHHHH---HHHHHHHhhccC--h---hhHHHHHhc
Q 015851          263 SAIHYEAVGVIGNLVHSSPNIKKEVLA--AGALQPVIGLLSSCCSESQRE---AALLLGQFAATD--S---DCKVHIVQR  332 (399)
Q Consensus       263 ~~v~~~a~~~L~~l~~~~~~~~~~~~~--~~~l~~L~~lL~~~~~~v~~~---a~~~L~~l~~~~--~---~~~~~l~~~  332 (399)
                      -.||+.+|-+|..|..+.+..  .+.+  ......+.+.+++-...+|+.   ++.+|+.++...  .   ..-+.+.+ 
T Consensus      1053 wRVReasclAL~dLl~g~~~~--~~~e~lpelw~~~fRvmDDIKEsVR~aa~~~~~~lsKl~vr~~d~~~~~~~~~~l~- 1129 (1702)
T KOG0915|consen 1053 WRVREASCLALADLLQGRPFD--QVKEKLPELWEAAFRVMDDIKESVREAADKAARALSKLCVRICDVTNGAKGKEALD- 1129 (1702)
T ss_pred             HHHHHHHHHHHHHHHcCCChH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcccHHHHHH-
Confidence            899999999999999764432  2211  123334444444444456655   556677666431  1   11111211 


Q ss_pred             CCHHHHHH--hhCCCCHHHHHHHHHHHHHhhccCCCC---cchhHHHHH--hhccccHHHHHHHH
Q 015851          333 GAVRPLIE--MLQSPDVQLREMSAFALGRLAQVITVS---VLPAILIFI--IINECQLEVLAFVL  390 (399)
Q Consensus       333 g~v~~L~~--ll~~~~~~v~~~a~~~L~~l~~~~~~~---~~~~~~~~~--~~~~~~~~~~~~~l  390 (399)
                      .++|.|++  ++ ++-+++|..+...+..++++++..   ..|.++..+  ...+.+.+++-++-
T Consensus      1130 ~iLPfLl~~gim-s~v~evr~~si~tl~dl~Kssg~~lkP~~~~LIp~ll~~~s~lE~~vLnYls 1193 (1702)
T KOG0915|consen 1130 IILPFLLDEGIM-SKVNEVRRFSIGTLMDLAKSSGKELKPHFPKLIPLLLNAYSELEPQVLNYLS 1193 (1702)
T ss_pred             HHHHHHhccCcc-cchHHHHHHHHHHHHHHHHhchhhhcchhhHHHHHHHHHccccchHHHHHHH
Confidence            23454443  22 678999999999999999999865   234443333  33444555555443

>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]

Probab=97.01  E-value=0.046  Score=54.89  Aligned_cols=276  Identities=17%  Similarity=0.148  Sum_probs=183.5

Q ss_pred             hHHHHhhhhhcchhhhHHHHHHHHHHHHHHcCChhHHHHHHhCCChHHHHhcccCCCCcccccCCCcchHHHHHHHHHHH
Q 015851           61 AQVNVLNTTFSWLEADRAAAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFAL  140 (399)
Q Consensus        61 ~~~~~L~~~l~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~~~~~a~~~L  140 (399)
                      ...+...++.  ++..+.+|..+..-+++++..-..  .....+.++.+.++..++..            .+|..|...+
T Consensus       237 elr~~~~~lc--~d~~~~Vr~~~a~~l~~~a~~~~~--~~~~s~v~~~~~~L~~Ddqd------------sVr~~a~~~~  300 (759)
T KOG0211|consen  237 ELRPIVQSLC--QDDTPMVRRAVASNLGNIAKVLES--EIVKSEVLPTLIQLLRDDQD------------SVREAAVESL  300 (759)
T ss_pred             HHHHHHHhhc--cccchhhHHHHHhhhHHHHHHHHH--HHHHhhccHHHhhhhhcchh------------hHHHHHHHHH
Confidence            3344444444  566778888888888888875222  56678899999999988766            6788888888


Q ss_pred             HHhcCChhhHHHHHhcCcHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhhcCCC
Q 015851          141 GLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTD  220 (399)
Q Consensus       141 ~~l~~~~~~~~~i~~~~~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~  220 (399)
                      .++...-.... -......+.+++..++.+.        .+........+.+...-..   .......++....++++..
T Consensus       301 ~~l~~l~~~~~-d~~~~~~~~l~~~~~d~~~--------~v~~~~~~~~~~L~~~~~~---~~~~~~~~~~~~~l~~~~~  368 (759)
T KOG0211|consen  301 VSLLDLLDDDD-DVVKSLTESLVQAVEDGSW--------RVSYMVADKFSELSSAVGP---SATRTQLVPPVSNLLKDEE  368 (759)
T ss_pred             HHHHHhcCCch-hhhhhhhHHHHHHhcChhH--------HHHHHHhhhhhhHHHHhcc---ccCcccchhhHHHHhcchh
Confidence            88772111110 1112356677777766654        5556555555555532111   1223355778888888888


Q ss_pred             HHHHHHHHHHHHHhhcCC-hhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHHCCCcHHHHHh
Q 015851          221 TKVQRAAAGALRTLAFKN-DENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGL  299 (399)
Q Consensus       221 ~~v~~~a~~~L~~L~~~~-~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~l  299 (399)
                      .+.+..++.-...++... .+....+....++|.+-.+..+.+..++...+..+..+.-..+.   .-.-....+.++..
T Consensus       369 ~e~r~a~a~~~~~l~~~l~~~~~~~i~~~~ilp~~~~lv~d~~~~vr~a~a~~~~~~~p~~~k---~~ti~~llp~~~~~  445 (759)
T KOG0211|consen  369 WEVRYAIAKKVQKLACYLNASCYPNIPDSSILPEVQVLVLDNALHVRSALASVITGLSPILPK---ERTISELLPLLIGN  445 (759)
T ss_pred             hhhhHHhhcchHHHhhhcCcccccccchhhhhHHHHHHHhcccchHHHHHhccccccCccCCc---CcCccccChhhhhh
Confidence            888877776666665421 12233445555688888888888999998888888877532221   11123467788888


Q ss_pred             hcCCChHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhccCCCC
Q 015851          300 LSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQVITVS  367 (399)
Q Consensus       300 L~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~  367 (399)
                      ++...+.++.+..+.+..+-...+..-........+|.+..+-.....+++.+..+.+..++......
T Consensus       446 l~de~~~V~lnli~~ls~~~~v~~v~g~~~~s~slLp~i~el~~d~~wRvr~ail~~ip~la~q~~~~  513 (759)
T KOG0211|consen  446 LKDEDPIVRLNLIDKLSLLEEVNDVIGISTVSNSLLPAIVELAEDLLWRVRLAILEYIPQLALQLGVE  513 (759)
T ss_pred             cchhhHHHHHhhHHHHHHHHhccCcccchhhhhhhhhhhhhhccchhHHHHHHHHHHHHHHHHhhhhH
Confidence            88889999999998777665444444445555667788888887778899999999999888777643

>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []

Probab=96.98  E-value=0.087  Score=47.66  Aligned_cols=183  Identities=20%  Similarity=0.190  Sum_probs=110.5

Q ss_pred             hhhHHHHHHHHHHHHHHcCChhHHHHHH--hCCChHHHHhcccCCCCcccccCCCcchHHHHHHHHHHHHHhc-C-C-hh
Q 015851           74 EADRAAAKRATHVLAELAKNEEVVNWIV--EGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA-V-K-PE  148 (399)
Q Consensus        74 ~~~~~~~~~a~~~L~~l~~~~~~~~~~~--~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~~~~~a~~~L~~l~-~-~-~~  148 (399)
                      +.....|..++..+.++.......+.+.  ...++..+...++....            +=+..|+.+++-++ . + ..
T Consensus        54 eK~~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg~~------------~E~~lA~~~l~Ll~ltlg~g~  121 (309)
T PF05004_consen   54 EKSSSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKGKS------------EEQALAARALALLALTLGAGE  121 (309)
T ss_pred             hcCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccCCH------------HHHHHHHHHHHHHhhhcCCCc
Confidence            3456789999999999886433323332  22467777777776554            23456778888877 3 1 22


Q ss_pred             hHHHHHhcCcHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhh---cCchhHHHHHhcCChHHHH--Hhhc------
Q 015851          149 HQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAH---ENSSIKTRVRMEGGIPPLV--ELLE------  217 (399)
Q Consensus       149 ~~~~i~~~~~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~---~~~~~~~~~~~~~~i~~L~--~ll~------  217 (399)
                      ....+.+ ...|.|...+.+.....      .++..++.+|+-++.   .++......  ...+..+.  ...+      
T Consensus       122 ~~~ei~~-~~~~~L~~~l~d~s~~~------~~R~~~~~aLai~~fv~~~d~~~~~~~--~~~le~if~~~~~~~~~~~~  192 (309)
T PF05004_consen  122 DSEEIFE-ELKPVLKRILTDSSASP------KARAACLEALAICTFVGGSDEEETEEL--MESLESIFLLSILKSDGNAP  192 (309)
T ss_pred             cHHHHHH-HHHHHHHHHHhCCccch------HHHHHHHHHHHHHHHhhcCChhHHHHH--HHHHHHHHHHHhcCcCCCcc
Confidence            3333333 36788888888775432      455556666666553   222111100  01122111  1111      


Q ss_pred             ----CCCHHHHHHHHHHHHHhhcCChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhh
Q 015851          218 ----FTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLV  277 (399)
Q Consensus       218 ----~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~  277 (399)
                          .+++.+...|+.+.+-|...-+...-.-.-...+|.|..+|++++.+||..|..+|+-|.
T Consensus       193 ~~~~~~~~~l~~aAL~aW~lLlt~~~~~~~~~~~~~~~~~l~~lL~s~d~~VRiAAGEaiAll~  256 (309)
T PF05004_consen  193 VVAAEDDAALVAAALSAWALLLTTLPDSKLEDLLEEALPALSELLDSDDVDVRIAAGEAIALLY  256 (309)
T ss_pred             cccCCCccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence                123678999988888888655543222222346999999999999999999999998875

The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].

>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]

Probab=96.90  E-value=0.013  Score=58.30  Aligned_cols=152  Identities=16%  Similarity=0.126  Sum_probs=111.8

Q ss_pred             CChHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhhHHHHHh--cCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHH
Q 015851          207 GGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVE--CNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIK  284 (399)
Q Consensus       207 ~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~--~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~  284 (399)
                      ..+|.+++.........+..-+.+|.+...+.|.  +.+..  ...+|.|++.|+-+|..++..+..++.-+....+...
T Consensus       867 ~ivP~l~~~~~t~~~~~K~~yl~~LshVl~~vP~--~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~tL~  944 (1030)
T KOG1967|consen  867 DIVPILVSKFETAPGSQKHNYLEALSHVLTNVPK--QVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESETLQ  944 (1030)
T ss_pred             hhHHHHHHHhccCCccchhHHHHHHHHHHhcCCH--HhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhccccc
Confidence            5678888888876777888888899988875444  33333  4578899999999999999999999988775433322


Q ss_pred             HHHHHCCCcHHHHHhhcCCC---hHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhh
Q 015851          285 KEVLAAGALQPVIGLLSSCC---SESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLA  361 (399)
Q Consensus       285 ~~~~~~~~l~~L~~lL~~~~---~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~  361 (399)
                      ..- -.-+++.++.+-.+++   ..+|..|..+|..+++.-|...-.-....++..|.+.|.++-.-||+.|+.+=.+..
T Consensus       945 t~~-~~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDkKRlVR~eAv~tR~~W~ 1023 (1030)
T KOG1967|consen  945 TEH-LSTLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDKKRLVRKEAVDTRQNWY 1023 (1030)
T ss_pred             hHH-HhHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCcccccccHHHHHHhhhccCcHHHHHHHHHHHHhhhhh
Confidence            211 1235677777665544   478999999999999755655445555667889999999888889999988755443

>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=96.89  E-value=0.004  Score=46.77  Aligned_cols=72  Identities=21%  Similarity=0.301  Sum_probs=59.9

Q ss_pred             cHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhhc
Q 015851          158 ALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAF  236 (399)
Q Consensus       158 ~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~  236 (399)
                      .+..|+++|....+.       .....+|.=|+.++...|..+..+...|+-..++.+|.++|++|+..|+.++..+..
T Consensus        44 llk~L~~lL~~s~d~-------~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~  115 (119)
T PF11698_consen   44 LLKKLIKLLDKSDDP-------TTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLMV  115 (119)
T ss_dssp             HHHHHHHHH-SHHHH-------HHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHccCCCc-------ceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence            688899999665543       677789999999999999999888788999999999999999999999999987764

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.

>KOG0915 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.87  E-value=0.13  Score=54.37  Aligned_cols=288  Identities=15%  Similarity=0.144  Sum_probs=154.4

Q ss_pred             hhhhhhHHHHhhhhhcchhhhHHHHHHHHHHHHHHcCChh-HHHHHHhCCChHHHHhcccCCCCcccccCCCcchHHHHH
Q 015851           56 LSEVSAQVNVLNTTFSWLEADRAAAKRATHVLAELAKNEE-VVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEK  134 (399)
Q Consensus        56 ~~~~~~~~~~L~~~l~~~~~~~~~~~~a~~~L~~l~~~~~-~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~~~~  134 (399)
                      ..+.+.++|.|-++-  =|++..+|.....+...+..|+. ..+.. -..++.-|+.-|.+..-            .+|+
T Consensus       993 ~p~l~kLIPrLyRY~--yDP~~~Vq~aM~sIW~~Li~D~k~~vd~y-~neIl~eLL~~lt~kew------------RVRe 1057 (1702)
T KOG0915|consen  993 EPYLKKLIPRLYRYQ--YDPDKKVQDAMTSIWNALITDSKKVVDEY-LNEILDELLVNLTSKEW------------RVRE 1057 (1702)
T ss_pred             hhHHHHhhHHHhhhc--cCCcHHHHHHHHHHHHHhccChHHHHHHH-HHHHHHHHHHhccchhH------------HHHH
Confidence            345666777777764  35677788877777777888743 33333 23445555555555444            7889


Q ss_pred             HHHHHHHHhcCChhhHHHHHh-cCcHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhhc----CchhHHHHHhcCCh
Q 015851          135 GSAFALGLLAVKPEHQQLIVD-NGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHE----NSSIKTRVRMEGGI  209 (399)
Q Consensus       135 ~a~~~L~~l~~~~~~~~~i~~-~~~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~----~~~~~~~~~~~~~i  209 (399)
                      .++.+|..|-+.++.-+..-. ...-..+++.+++-.+...     +.-..++.+|+.+|..    ....+..-....++
T Consensus      1058 asclAL~dLl~g~~~~~~~e~lpelw~~~fRvmDDIKEsVR-----~aa~~~~~~lsKl~vr~~d~~~~~~~~~~l~~iL 1132 (1702)
T KOG0915|consen 1058 ASCLALADLLQGRPFDQVKEKLPELWEAAFRVMDDIKESVR-----EAADKAARALSKLCVRICDVTNGAKGKEALDIIL 1132 (1702)
T ss_pred             HHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHhhhcccCCcccHHHHHHHHH
Confidence            999999999965544332211 1133444444444333111     3445566777777731    11111111223445


Q ss_pred             HHHHHh-hcCCCHHHHHHHHHHHHHhhcCChhhHHHHHhcCCHHHHHHhhcCCCHHHHH-HHHHHHHHhh----------
Q 015851          210 PPLVEL-LEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHY-EAVGVIGNLV----------  277 (399)
Q Consensus       210 ~~L~~l-l~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~-~a~~~L~~l~----------  277 (399)
                      |.|+.- +-+.-+++|+.++.++..|+.+..... .-.-...+|.|+...+.-++.+.. .++++ .|+.          
T Consensus      1133 PfLl~~gims~v~evr~~si~tl~dl~Kssg~~l-kP~~~~LIp~ll~~~s~lE~~vLnYls~r~-~~~e~ealDt~R~s 1210 (1702)
T KOG0915|consen 1133 PFLLDEGIMSKVNEVRRFSIGTLMDLAKSSGKEL-KPHFPKLIPLLLNAYSELEPQVLNYLSLRL-INIETEALDTLRAS 1210 (1702)
T ss_pred             HHHhccCcccchHHHHHHHHHHHHHHHHhchhhh-cchhhHHHHHHHHHccccchHHHHHHHHhh-hhhHHHHHHHHHHh
Confidence            665542 125568999999999999997433311 111134577777777665544332 23333 2221          


Q ss_pred             --cCChhH--HHHHH-------HCCCcHHHHHhhcCC-ChHHHHHHHHHHHHhhccCh-hhHHHHHhcCCHHHHHHhhCC
Q 015851          278 --HSSPNI--KKEVL-------AAGALQPVIGLLSSC-CSESQREAALLLGQFAATDS-DCKVHIVQRGAVRPLIEMLQS  344 (399)
Q Consensus       278 --~~~~~~--~~~~~-------~~~~l~~L~~lL~~~-~~~v~~~a~~~L~~l~~~~~-~~~~~l~~~g~v~~L~~ll~~  344 (399)
                        .++|--  ....+       -...+|.+.++++++ ....+..++..+.-++..-. +....  ....+..++..+++
T Consensus      1211 ~aksspmmeTi~~ci~~iD~~vLeelip~l~el~R~sVgl~Tkvg~A~fI~~L~~r~~~emtP~--sgKll~al~~g~~d 1288 (1702)
T KOG0915|consen 1211 AAKSSPMMETINKCINYIDISVLEELIPRLTELVRGSVGLGTKVGCASFISLLVQRLGSEMTPY--SGKLLRALFPGAKD 1288 (1702)
T ss_pred             hhcCCcHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccCCCCcchhHHHHHHHHHHHhccccCcc--hhHHHHHHhhcccc
Confidence              111110  00000       113455555555432 22344445555555543211 11111  11235566666778


Q ss_pred             CCHHHHHHHHHHHHHhhccCCCC
Q 015851          345 PDVQLREMSAFALGRLAQVITVS  367 (399)
Q Consensus       345 ~~~~v~~~a~~~L~~l~~~~~~~  367 (399)
                      .++.+++.-..+.+.++..+.+.
T Consensus      1289 RNesv~kafAsAmG~L~k~Ss~d 1311 (1702)
T KOG0915|consen 1289 RNESVRKAFASAMGYLAKFSSPD 1311 (1702)
T ss_pred             ccHHHHHHHHHHHHHHHhcCChH
Confidence            89999999999999999877653

>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1

Probab=96.86  E-value=0.041  Score=47.62  Aligned_cols=98  Identities=20%  Similarity=0.278  Sum_probs=85.3

Q ss_pred             HHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhhcC-CCHHHHHHHHHHHHHhhcCChhhHHHHHhcCCHHHHHHhh
Q 015851          180 SVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEF-TDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILML  258 (399)
Q Consensus       180 ~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~-~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~L~~ll  258 (399)
                      .....++.+|.-++.-++..+..+.....+..++.+|.. ..+.++..++.+|..+...++.+...+-+.+|+..++.++
T Consensus       106 ~li~~aL~vLQGl~LLHp~Sr~lF~r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~N~r~FE~~~Gl~~v~~ll  185 (257)
T PF08045_consen  106 SLIALALRVLQGLCLLHPPSRKLFHREQNMELLLDLLSPSNPPAIQSACLDTLVCILLDSPENQRDFEELNGLSTVCSLL  185 (257)
T ss_pred             HHHHHHHHHHHHHHHcCchHHHHHhhhhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcChHHHHHHHHhCCHHHHHHHH
Confidence            456668899999999999999999999999999999954 5689999999999999998999999999999999999999


Q ss_pred             cCC--CHHHHHHHHHHHHHhh
Q 015851          259 RSE--DSAIHYEAVGVIGNLV  277 (399)
Q Consensus       259 ~~~--~~~v~~~a~~~L~~l~  277 (399)
                      ++.  +.+++..++..|.-..
T Consensus       186 k~~~~~~~~r~K~~EFL~fyl  206 (257)
T PF08045_consen  186 KSKSTDRELRLKCIEFLYFYL  206 (257)
T ss_pred             ccccccHHHhHHHHHHHHHHH
Confidence            864  6688888887776654

Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].

>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1

Probab=96.84  E-value=0.063  Score=44.37  Aligned_cols=90  Identities=21%  Similarity=0.252  Sum_probs=72.5

Q ss_pred             HHHHHHHHHHHHHhc-CChhhHHHHHhcCcHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhhcCchhHHHHHhcC-
Q 015851          130 HEVEKGSAFALGLLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEG-  207 (399)
Q Consensus       130 ~~~~~~a~~~L~~l~-~~~~~~~~i~~~~~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~-  207 (399)
                      |.+|.+++.+++-|+ ..|...+.     .++.+...|.+++.        .+++.++.+|.+|...+.     +.-.| 
T Consensus         2 ~~vR~n~i~~l~DL~~r~~~~ve~-----~~~~l~~~L~D~~~--------~VR~~al~~Ls~Li~~d~-----ik~k~~   63 (178)
T PF12717_consen    2 PSVRNNAIIALGDLCIRYPNLVEP-----YLPNLYKCLRDEDP--------LVRKTALLVLSHLILEDM-----IKVKGQ   63 (178)
T ss_pred             HHHHHHHHHHHHHHHHhCcHHHHh-----HHHHHHHHHCCCCH--------HHHHHHHHHHHHHHHcCc-----eeehhh
Confidence            589999999999999 66655443     57888999998876        899999999999996432     22223 


Q ss_pred             ChHHHHHhhcCCCHHHHHHHHHHHHHhhcC
Q 015851          208 GIPPLVELLEFTDTKVQRAAAGALRTLAFK  237 (399)
Q Consensus       208 ~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~  237 (399)
                      .+..++.++.+++++++..|..++..+...
T Consensus        64 l~~~~l~~l~D~~~~Ir~~A~~~~~e~~~~   93 (178)
T PF12717_consen   64 LFSRILKLLVDENPEIRSLARSFFSELLKK   93 (178)
T ss_pred             hhHHHHHHHcCCCHHHHHHHHHHHHHHHHh
Confidence            347788889999999999999999999973

>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins

Probab=96.84  E-value=0.23  Score=47.19  Aligned_cols=153  Identities=14%  Similarity=0.125  Sum_probs=99.1

Q ss_pred             HHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhh--------HHHHHhc---
Q 015851          180 SVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDEN--------KNQIVEC---  248 (399)
Q Consensus       180 ~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~--------~~~~~~~---  248 (399)
                      ...+...|+..-+.......     ....+..++.++.+  +++...+++++.-|..+.++.        .+.+.+.   
T Consensus       249 ~~~~~~~Wi~KaLv~R~~~~-----~~~~~~~L~~lL~~--~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F  321 (415)
T PF12460_consen  249 QALEILIWITKALVMRGHPL-----ATELLDKLLELLSS--PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFF  321 (415)
T ss_pred             HHHHHHHHHHHHHHHcCCch-----HHHHHHHHHHHhCC--hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHH
Confidence            34444556555555333221     12335667888777  777888899999888742332        1222222   


Q ss_pred             -CCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHHCCCcHHHHHhhcCCChHHHHHHHHHHHHhhccChhhHH
Q 015851          249 -NALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKV  327 (399)
Q Consensus       249 -~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~  327 (399)
                       ..+|.|+...+..+.+.+..-+.+|.++..+-|.....---...+|.+++.|+.++..++..+..+|..+....++...
T Consensus       322 ~~~~p~L~~~~~~~~~~~k~~yL~ALs~ll~~vP~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~~~~i~  401 (415)
T PF12460_consen  322 TQVLPKLLEGFKEADDEIKSNYLTALSHLLKNVPKSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEAPELIS  401 (415)
T ss_pred             HHHHHHHHHHHhhcChhhHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCHHHHH
Confidence             2567777777776767888899999999877665433333346789999999999999999999999999876544433


Q ss_pred             HHHhcCCHHHHHH
Q 015851          328 HIVQRGAVRPLIE  340 (399)
Q Consensus       328 ~l~~~g~v~~L~~  340 (399)
                      .-.+ .+++.|++
T Consensus       402 ~hl~-sLI~~LL~  413 (415)
T PF12460_consen  402 EHLS-SLIPRLLK  413 (415)
T ss_pred             HHHH-HHHHHHHh
Confidence            3222 34555554

MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].

>KOG4464 consensus Signaling protein RIC-8/synembryn (regulates neurotransmitter secretion) [Signal transduction mechanisms]

Probab=96.84  E-value=0.069  Score=48.59  Aligned_cols=285  Identities=13%  Similarity=0.137  Sum_probs=155.2

Q ss_pred             HHHHHHHHHHHHHHcCChhHHHHHHhCCChHHHHhcccCCCCcccccCCCcchHHHHHHHHHHHHHhc-CChhhHHHHHh
Q 015851           77 RAAAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA-VKPEHQQLIVD  155 (399)
Q Consensus        77 ~~~~~~a~~~L~~l~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~~~~~a~~~L~~l~-~~~~~~~~i~~  155 (399)
                      ...|...+.++..++++...-.-+...-.+..|+.+-.-+...  .+.+...+..+...+.++|.|+. .++..++.+.+
T Consensus        60 ~t~~v~~LetvrILSRdk~~L~~~~~~q~~~~ll~~A~ls~~e--~sl~~v~d~~vi~EslKCLcNlvf~Sq~~q~~~~~  137 (532)
T KOG4464|consen   60 LTHRVVCLETVRILSRDKDGLEPLTNDQLCQKLLALAELSSNE--NSLPTVADMHVIMESLKCLCNLVFHSQRAQDLFLE  137 (532)
T ss_pred             chhhhhHHHHHHHHhccccccccccchHHHHHHHHHHHhcccc--CCCCcccchHHHHHHHHHHHHHHhccHHHHHHHHh
Confidence            4567788888888888755544443333445555443321110  01122334478889999999999 88899999999


Q ss_pred             cCcHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhhcCchhHHH-HHhcCChHHHHHhhcCC---------------
Q 015851          156 NGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTR-VRMEGGIPPLVELLEFT---------------  219 (399)
Q Consensus       156 ~~~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~-~~~~~~i~~L~~ll~~~---------------  219 (399)
                      ......+++.+....+..-..   ++...-+..|.-+..-....+.. +...+|++.+...+.+.               
T Consensus       138 ~~~~~~ll~~v~~~~er~~~~---~~~~~dlrLLflltale~~~Rsql~~~l~Gl~~lt~~led~lgidse~n~~~l~pq  214 (532)
T KOG4464|consen  138 NPLTGKLLQRVLGEFERNFPK---DSSIFDLRLLFLLTALETDHRSQLIAELLGLELLTNWLEDKLGIDSEINVPPLNPQ  214 (532)
T ss_pred             hhhHHHHHHHHHHHHHhcCCc---cchhhHHHHHHHHHHhhHHHHHHHHHHhcccHHHHHHhhccccCCCCcCCCCCCHH
Confidence            888888888876543311000   34444455555555434444444 45568999998888542               


Q ss_pred             CHHHHHHHHHHHHHhhcCChhhHH--HHHhcCCH----HHHHHhhc--CCCHHHHHHHHHHHHHh--------hc--CCh
Q 015851          220 DTKVQRAAAGALRTLAFKNDENKN--QIVECNAL----PTLILMLR--SEDSAIHYEAVGVIGNL--------VH--SSP  281 (399)
Q Consensus       220 ~~~v~~~a~~~L~~L~~~~~~~~~--~~~~~~~~----~~L~~ll~--~~~~~v~~~a~~~L~~l--------~~--~~~  281 (399)
                      .......++.++.|++.+......  .-.....+    ..++..+.  ....++..++...|.|.        +.  ..+
T Consensus       215 e~n~a~EaLK~~FNvt~~~~k~~ke~~~~~~r~l~~llr~cl~~vT~~~~~~elhshav~~L~nv~~k~~~~~~~~~p~E  294 (532)
T KOG4464|consen  215 ETNRACEALKVFFNVTCDSDKDVKEEHAIQARHLTILLRHCLLIVTLRDSTEELHSHAVNLLDNVPEKCLDVLAGAKPHE  294 (532)
T ss_pred             HHHHHHHHHHHHhheeeccccccchhhHHHHHHHHHHHHHHHhhccccchHHHHhhccCCccCCchhhhhhcccCCCCcc
Confidence            124567788888898874332211  11111111    22222221  12233443333333322        11  011


Q ss_pred             hHHHHH--HHCCCcHHHHHhhcCCC---------hHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHH----------
Q 015851          282 NIKKEV--LAAGALQPVIGLLSSCC---------SESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIE----------  340 (399)
Q Consensus       282 ~~~~~~--~~~~~l~~L~~lL~~~~---------~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~v~~L~~----------  340 (399)
                      ...+.+  .....+..+..+|....         .+...-...+|..++.. ....+.+....++|+|..          
T Consensus       295 ~~sq~f~~~n~~~mdVi~~lLn~~~~qq~~~ss~~EllsPvlsVL~~car~-~R~~Rkylr~qVLPPLrDV~~RPEvg~t  373 (532)
T KOG4464|consen  295 CCSQCFEKRNGRNMDVILRLLNFSEKQQEKESSLHELLSPVLSVLTECARS-HRVMRKYLRQQVLPPLRDVSQRPEVGQT  373 (532)
T ss_pred             hHHHHHHHhcchhHHHHHHHHHhhHHHHhhhhhhhhhhhhHHHHHHHHHhh-hHHHHHHHHHhcCCchhhhhcCcchhHH
Confidence            111212  22223445555554211         12333355677777753 555555655557766654          


Q ss_pred             -------hhCCCCHHHHHHHHHHHHHhhccCCCC
Q 015851          341 -------MLQSPDVQLREMSAFALGRLAQVITVS  367 (399)
Q Consensus       341 -------ll~~~~~~v~~~a~~~L~~l~~~~~~~  367 (399)
                             ++..++..++..|+..|..||+.+-++
T Consensus       374 LRnkl~Rlmtl~~~~~K~vaAEfLFvLCKesV~r  407 (532)
T KOG4464|consen  374 LRNKLVRLMTLPDSSVKDVAAEFLFVLCKESVNR  407 (532)
T ss_pred             HHHhhHhheeccchhhhhhhHHHHHHHhhcchhh
Confidence                   444456677788888888888877764

>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]

Probab=96.83  E-value=0.012  Score=54.47  Aligned_cols=186  Identities=14%  Similarity=0.099  Sum_probs=105.1

Q ss_pred             HHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhhcC----Chh--hHHHHHhcCCHHHH
Q 015851          181 VIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFK----NDE--NKNQIVECNALPTL  254 (399)
Q Consensus       181 ~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~----~~~--~~~~~~~~~~~~~L  254 (399)
                      +...+.+++.-+.-+.........-......++..+.+..-..|.++.++++||+..    .|.  ....-...-.+..+
T Consensus       407 v~~aA~Ra~~VyVLHp~lr~d~~fv~~aa~~il~sl~d~~ln~r~KaawtlgnITdAL~~~~Ps~~s~~eR~sg~ll~~~  486 (728)
T KOG4535|consen  407 VKAAASRALGVYVLHPCLRQDVIFVADAANAILMSLEDKSLNVRAKAAWSLGNITDALIVNMPTPDSFQERFSGLLLLKM  486 (728)
T ss_pred             HHHHHHhhceeEEeccchhhhHHHHHHHHHHHHHHhhhHhHhHHHHHHHHhhhhHHHHHcCCCCchHHHHHHHHHHHHHH
Confidence            334455555554433332222222334455566666777788999999999999852    121  11111111123333


Q ss_pred             HHhhc---CCCHHHHHHHHHHHHHhhcCChh---HHHHHHHCCCcHHHHHh-hcCCChHHHHHHHHHHHHhhccChh-hH
Q 015851          255 ILMLR---SEDSAIHYEAVGVIGNLVHSSPN---IKKEVLAAGALQPVIGL-LSSCCSESQREAALLLGQFAATDSD-CK  326 (399)
Q Consensus       255 ~~ll~---~~~~~v~~~a~~~L~~l~~~~~~---~~~~~~~~~~l~~L~~l-L~~~~~~v~~~a~~~L~~l~~~~~~-~~  326 (399)
                      +....   -.+..|+.+|.++|+|+..--..   .....+..+.+..++.. .-.....++-+||.+++|+.....- ..
T Consensus       487 ~~~A~~~~Ad~dkV~~navraLgnllQvlq~i~~~~~~e~~~~~~~~l~~~v~~~~~~kV~WNaCya~gNLfkn~a~~lq  566 (728)
T KOG4535|consen  487 LRSAIEASADKDKVKSNAVRALGNLLQFLQPIEKPTFAEIIEESIQALISTVLTEAAMKVRWNACYAMGNLFKNPALPLQ  566 (728)
T ss_pred             HHHHHHhhhhhhhhhhHHHHHHhhHHHHHHHhhhccHHHHHHHHHHhcccceecccccccchHHHHHHHHhhcCcccccc
Confidence            33222   24568999999999998642110   11111112222222222 2234568999999999999854211 11


Q ss_pred             HHHHhcCCHHHHHHhhC-CCCHHHHHHHHHHHHHhhccCCC
Q 015851          327 VHIVQRGAVRPLIEMLQ-SPDVQLREMSAFALGRLAQVITV  366 (399)
Q Consensus       327 ~~l~~~g~v~~L~~ll~-~~~~~v~~~a~~~L~~l~~~~~~  366 (399)
                      ..=+...+++.|+.++. ..+-+||..|+.+|..-+...+.
T Consensus       567 ~~~wA~~~F~~L~~Lv~~~~NFKVRi~AA~aL~vp~~re~~  607 (728)
T KOG4535|consen  567 TAPWASQAFNALTSLVTSCKNFKVRIRAAAALSVPGKREQY  607 (728)
T ss_pred             CCCchHHHHHHHHHHHHHhccceEeehhhhhhcCCCCcccc
Confidence            12223456788888885 57899999999999887765553

>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function

Probab=96.82  E-value=0.019  Score=47.75  Aligned_cols=105  Identities=13%  Similarity=0.071  Sum_probs=76.4

Q ss_pred             CCCHHHHHHHHHHHHHhhcCChhHHHHHHHC----------------CCcHHHHHhhcC------CChHHHHHHHHHHHH
Q 015851          260 SEDSAIHYEAVGVIGNLVHSSPNIKKEVLAA----------------GALQPVIGLLSS------CCSESQREAALLLGQ  317 (399)
Q Consensus       260 ~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~----------------~~l~~L~~lL~~------~~~~v~~~a~~~L~~  317 (399)
                      +++......++..|+|++.. +.....+++.                ..+..|+.++..      ....-....+.++.|
T Consensus         6 ~~~~~~adl~~MLLsNlT~~-~~~~~~ll~~~~~~~~~~~~~~~~~~~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl~N   84 (192)
T PF04063_consen    6 DPKSPLADLACMLLSNLTRS-DSGCEKLLQLKRESSSQAPKEVSLSGFYLDKLLDLFVKGADPSYNKKDNYDYLASVLAN   84 (192)
T ss_pred             CCCcchHHHHHHHHHHhccc-hHHHHHHHhcccccccccccccchhHHHHHHHHHHHHcCCcccCCCCcchhHHHHHHHH
Confidence            44556777889999999975 4444434322                246677777654      233556778899999


Q ss_pred             hhccChhhHHHHHhc--CC--HHHHHHhhCCCCHHHHHHHHHHHHHhhccCCC
Q 015851          318 FAATDSDCKVHIVQR--GA--VRPLIEMLQSPDVQLREMSAFALGRLAQVITV  366 (399)
Q Consensus       318 l~~~~~~~~~~l~~~--g~--v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~  366 (399)
                      ++. -+++|+.+.+.  +.  +..|+.++.+.+..-|..++.+|+|+|.+...
T Consensus        85 lS~-~~~gR~~~l~~~~~~~~l~kLl~ft~~~s~iRR~Gva~~IrNccFd~~~  136 (192)
T PF04063_consen   85 LSQ-LPEGRQFFLDPQRYDGPLQKLLPFTEHKSVIRRGGVAGTIRNCCFDTDS  136 (192)
T ss_pred             hcC-CHHHHHHHhCchhhhhHHHHHHHHhccCcHHHHHHHHHHHHHhhccHhH
Confidence            986 58999999873  34  67888888888777788888999999988775

It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).

>KOG4653 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.81  E-value=0.044  Score=54.38  Aligned_cols=213  Identities=17%  Similarity=0.144  Sum_probs=134.0

Q ss_pred             HHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhhcCchhHHHHHhcCChH
Q 015851          131 EVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIP  210 (399)
Q Consensus       131 ~~~~~a~~~L~~l~~~~~~~~~i~~~~~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~  210 (399)
                      .+|-.++..|.++....+....+...+.+...+..|++.+.        -+--.+...+..||..        .....+|
T Consensus       742 pik~~gL~~l~~l~e~r~~~~~~~~ekvl~i~ld~Lkdeds--------yvyLnaI~gv~~Lcev--------y~e~il~  805 (982)
T KOG4653|consen  742 PIKGYGLQMLRHLIEKRKKATLIQGEKVLAIALDTLKDEDS--------YVYLNAIRGVVSLCEV--------YPEDILP  805 (982)
T ss_pred             cchHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHhcccCc--------eeeHHHHHHHHHHHHh--------cchhhHH
Confidence            46778888899988655666777778888999999988766        4556677777788843        3345677


Q ss_pred             HHHHh-hcCCC---HHHHHHHHHHHHHhhcCChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHH
Q 015851          211 PLVEL-LEFTD---TKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKE  286 (399)
Q Consensus       211 ~L~~l-l~~~~---~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~  286 (399)
                      .+.+. .+..+   ++.+-.+-.++.++...-.+......+ ..+..+++..++++...|..++..+++++.-.......
T Consensus       806 dL~e~Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y~~-~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~~a~~vsd  884 (982)
T KOG4653|consen  806 DLSEEYLSEKKKLQTDYRLKVGEAILKVAQALGELVFKYKA-VLINTFLSGVREPDHEFRASSLANLGQLCQLLAFQVSD  884 (982)
T ss_pred             HHHHHHHhcccCCCccceehHHHHHHHHHHHhccHHHHHHH-HHHHHHHHhcCCchHHHHHhHHHHHHHHHHHHhhhhhH
Confidence            77763 33221   355555567777777643333333333 35666777778888899999999999998532211111


Q ss_pred             HHHCCCcHHHHHhhc-CCChHHHHHHHHHHHHhhccChhhHHHHH---hcCCHHHHHHhhCC-CCHHHHHHHHHHHHHhh
Q 015851          287 VLAAGALQPVIGLLS-SCCSESQREAALLLGQFAATDSDCKVHIV---QRGAVRPLIEMLQS-PDVQLREMSAFALGRLA  361 (399)
Q Consensus       287 ~~~~~~l~~L~~lL~-~~~~~v~~~a~~~L~~l~~~~~~~~~~l~---~~g~v~~L~~ll~~-~~~~v~~~a~~~L~~l~  361 (399)
                       .-+..+..++.+.. ++++.+|+.|+-.+..+..+-....-.+.   ..+....+...+.. .+..++..|..++-.+-
T Consensus       885 -~~~ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~~tg~dlLpilr~~l~Dl~~tl~~~vr~~~dd~~klhaql~leei~  963 (982)
T KOG4653|consen  885 -FFHEVLQLILSLETTDGSVLVRRAAVHLLAELLNGTGEDLLPILRLLLIDLDETLLSYVRQHDDDGLKLHAQLCLEEIQ  963 (982)
T ss_pred             -HHHHHHHHHHHHHccCCchhhHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHH
Confidence             11234455555555 45668999999999988754322222221   22345556666643 45556677776665543

>KOG4653 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.71  E-value=0.049  Score=54.12  Aligned_cols=228  Identities=12%  Similarity=0.109  Sum_probs=136.5

Q ss_pred             HHhhhhhc-chhhhHHHHHHHHHHHHHHcCChhHHHHHHhCCChHHHHhcccCCCCcccccCCCcchHHHHHHHHHHHHH
Q 015851           64 NVLNTTFS-WLEADRAAAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGL  142 (399)
Q Consensus        64 ~~L~~~l~-~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~~~~~a~~~L~~  142 (399)
                      +.+.+++. ..++.+.+|-+++..|..+.+..+....+...+++...+..|.+.++            -+--.|...+..
T Consensus       727 e~~qeai~sl~d~qvpik~~gL~~l~~l~e~r~~~~~~~~ekvl~i~ld~Lkdeds------------yvyLnaI~gv~~  794 (982)
T KOG4653|consen  727 EPLQEAISSLHDDQVPIKGYGLQMLRHLIEKRKKATLIQGEKVLAIALDTLKDEDS------------YVYLNAIRGVVS  794 (982)
T ss_pred             HHHHHHHHHhcCCcccchHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHhcccCc------------eeeHHHHHHHHH
Confidence            33555443 34555668999999999999866666677788999999999999887            456688888888


Q ss_pred             hc-CChhhHHHHHhcCcHHHHHH-HHhccccCccccccHHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhhcCCC
Q 015851          143 LA-VKPEHQQLIVDNGALSHLVN-LLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTD  220 (399)
Q Consensus       143 l~-~~~~~~~~i~~~~~i~~L~~-~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~  220 (399)
                      || ..|        ...++.+.. +.+.......     +.+..+-.++.++.+.--+.-.... ...+..++...++++
T Consensus       795 Lcevy~--------e~il~dL~e~Y~s~k~k~~~-----d~~lkVGEai~k~~qa~Gel~~~y~-~~Li~tfl~gvrepd  860 (982)
T KOG4653|consen  795 LCEVYP--------EDILPDLSEEYLSEKKKLQT-----DYRLKVGEAILKVAQALGELVFKYK-AVLINTFLSGVREPD  860 (982)
T ss_pred             HHHhcc--------hhhHHHHHHHHHhcccCCCc-----cceehHHHHHHHHHHHhccHHHHHH-HHHHHHHHHhcCCch
Confidence            88 333        346777777 3433322211     2222333455555532211111111 134566777778888


Q ss_pred             HHHHHHHHHHHHHhhcCChhhHHHHHhcCCHHHHHHhhc-CCCHHHHHHHHHHHHHhhcCChhHHHHHH---HCCCcHHH
Q 015851          221 TKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLR-SEDSAIHYEAVGVIGNLVHSSPNIKKEVL---AAGALQPV  296 (399)
Q Consensus       221 ~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~L~~ll~-~~~~~v~~~a~~~L~~l~~~~~~~~~~~~---~~~~l~~L  296 (399)
                      ...|..++..+++++....-...... ...+..++.+.. ++..-+|+.|+..+..+-.+...-.-.+.   ..+....+
T Consensus       861 ~~~RaSS~a~lg~Lcq~~a~~vsd~~-~ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~~tg~dlLpilr~~l~Dl~~tl  939 (982)
T KOG4653|consen  861 HEFRASSLANLGQLCQLLAFQVSDFF-HEVLQLILSLETTDGSVLVRRAAVHLLAELLNGTGEDLLPILRLLLIDLDETL  939 (982)
T ss_pred             HHHHHhHHHHHHHHHHHHhhhhhHHH-HHHHHHHHHHHccCCchhhHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHH
Confidence            88899999999999973221111111 123444555554 45678999999999988765332222222   12333344


Q ss_pred             HHhhcC-CChHHHHHHHHHHHHh
Q 015851          297 IGLLSS-CCSESQREAALLLGQF  318 (399)
Q Consensus       297 ~~lL~~-~~~~v~~~a~~~L~~l  318 (399)
                      .++... ++..++..|+.++-.+
T Consensus       940 ~~~vr~~~dd~~klhaql~leei  962 (982)
T KOG4653|consen  940 LSYVRQHDDDGLKLHAQLCLEEI  962 (982)
T ss_pred             HHHHhcCchhHHHHHHHHHHHHH
Confidence            444443 3445666666655544

>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []

Probab=96.69  E-value=0.0028  Score=35.38  Aligned_cols=30  Identities=27%  Similarity=0.491  Sum_probs=26.3

Q ss_pred             CHHHHHHhhCCCCHHHHHHHHHHHHHhhcc
Q 015851          334 AVRPLIEMLQSPDVQLREMSAFALGRLAQV  363 (399)
Q Consensus       334 ~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~  363 (399)
                      ++|.+++++++++++||.+|+.+|+.+++.
T Consensus         1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~~   30 (31)
T PF02985_consen    1 LLPILLQLLNDPSPEVRQAAAECLGAIAEH   30 (31)
T ss_dssp             HHHHHHHHHT-SSHHHHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence            378999999999999999999999999864

Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....

>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=96.66  E-value=0.044  Score=56.23  Aligned_cols=156  Identities=22%  Similarity=0.274  Sum_probs=120.4

Q ss_pred             cCChHHHHHhhcC----CCHHHHHHHHHHHHHhhcCChhhHHHHHhcCCHHHHHHhhc-CCCHHHHHHHHHHHHHhhcCC
Q 015851          206 EGGIPPLVELLEF----TDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLR-SEDSAIHYEAVGVIGNLVHSS  280 (399)
Q Consensus       206 ~~~i~~L~~ll~~----~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~L~~ll~-~~~~~v~~~a~~~L~~l~~~~  280 (399)
                      ..+.|.+++.+++    .+|+++.+|.-+|+.+..-+.    .+++. .+|.|+..+. ++++-+|.++.-+++.++...
T Consensus       918 g~f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~iSa----~fces-~l~llftimeksp~p~IRsN~VvalgDlav~f  992 (1251)
T KOG0414|consen  918 GRFAPIVVEGCRNPGLFSDPELQAAATLALGKLMCISA----EFCES-HLPLLFTIMEKSPSPRIRSNLVVALGDLAVRF  992 (1251)
T ss_pred             HHHHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhhhH----HHHHH-HHHHHHHHHhcCCCceeeecchheccchhhhc
Confidence            3466888888844    579999999999998875332    33332 5788999887 789999999999999999765


Q ss_pred             hhHHHHHHHCCCcHHHHHhhcCCChHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHh
Q 015851          281 PNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRL  360 (399)
Q Consensus       281 ~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l  360 (399)
                      +....     ..-+.|...|...++.+|+.|..+|++|...     ..+.-.|.++.+..++.+++++++..|-.....|
T Consensus       993 pnlie-----~~T~~Ly~rL~D~~~~vRkta~lvlshLILn-----dmiKVKGql~eMA~cl~D~~~~IsdlAk~FF~El 1062 (1251)
T KOG0414|consen  993 PNLIE-----PWTEHLYRRLRDESPSVRKTALLVLSHLILN-----DMIKVKGQLSEMALCLEDPNAEISDLAKSFFKEL 1062 (1251)
T ss_pred             ccccc-----hhhHHHHHHhcCccHHHHHHHHHHHHHHHHh-----hhhHhcccHHHHHHHhcCCcHHHHHHHHHHHHHh
Confidence            55432     2456788889999999999999999999854     2445578899999999999999999999888888


Q ss_pred             hccCCC--CcchhHHHHH
Q 015851          361 AQVITV--SVLPAILIFI  376 (399)
Q Consensus       361 ~~~~~~--~~~~~~~~~~  376 (399)
                      +..++.  ..+|-++.-+
T Consensus      1063 s~k~n~iynlLPdil~~L 1080 (1251)
T KOG0414|consen 1063 SSKGNTIYNLLPDILSRL 1080 (1251)
T ss_pred             hhcccchhhhchHHHHhh
Confidence            877743  1445544333

>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]

Probab=96.64  E-value=0.17  Score=50.81  Aligned_cols=220  Identities=15%  Similarity=0.079  Sum_probs=141.1

Q ss_pred             HHHHHHHHHHHHhc-CChhhHHHHHhcCcHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhhcCchhHHHHHhcCCh
Q 015851          131 EVEKGSAFALGLLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGI  209 (399)
Q Consensus       131 ~~~~~a~~~L~~l~-~~~~~~~~i~~~~~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i  209 (399)
                      .+.-.+.+++...+ ..+.+...+..  ++...+..+......       -++..++.+++..+.... ..  -...+++
T Consensus       465 ~Ll~Ra~~~i~~fs~~~~~~~~~~~~--fl~~~v~~l~~~~~~-------~~ki~a~~~~~~~~~~~v-l~--~~~p~il  532 (1005)
T KOG2274|consen  465 FLLLRAFLTISKFSSSTVINPQLLQH--FLNATVNALTMDVPP-------PVKISAVRAFCGYCKVKV-LL--SLQPMIL  532 (1005)
T ss_pred             HHHHHHHHHHHHHHhhhccchhHHHH--HHHHHHHhhccCCCC-------chhHHHHHHHHhccCcee-cc--ccchHHH
Confidence            45557778887766 33333332221  344455555544433       566667777777772221 11  1234667


Q ss_pred             HHHHHhhcCCCHHHHHHHHHHHHHhhcCChhhHHHHHhcCCHHHHHHhhc--CCCHHHHHHHHHHHHHhhcCChhHHHHH
Q 015851          210 PPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLR--SEDSAIHYEAVGVIGNLVHSSPNIKKEV  287 (399)
Q Consensus       210 ~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~L~~ll~--~~~~~v~~~a~~~L~~l~~~~~~~~~~~  287 (399)
                      ..|+.+....+.++......+|...+..+++. ....+..+.|.++.++.  +++|.+...+-.++-.++..  .....-
T Consensus       533 d~L~qlas~~s~evl~llmE~Ls~vv~~dpef-~as~~skI~P~~i~lF~k~s~DP~V~~~~qd~f~el~q~--~~~~g~  609 (1005)
T KOG2274|consen  533 DGLLQLASKSSDEVLVLLMEALSSVVKLDPEF-AASMESKICPLTINLFLKYSEDPQVASLAQDLFEELLQI--AANYGP  609 (1005)
T ss_pred             HHHHHHcccccHHHHHHHHHHHHHHhccChhh-hhhhhcchhHHHHHHHHHhcCCchHHHHHHHHHHHHHHH--HHhhcc
Confidence            77888888888899999999999999855444 44555667887777654  46777777777777666531  112223


Q ss_pred             HHCCCcHHHHHhhcCCC----hHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHhh-CCCCHHHHHHHHHHHHHhhc
Q 015851          288 LAAGALQPVIGLLSSCC----SESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEML-QSPDVQLREMSAFALGRLAQ  362 (399)
Q Consensus       288 ~~~~~l~~L~~lL~~~~----~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~v~~L~~ll-~~~~~~v~~~a~~~L~~l~~  362 (399)
                      .....+|.+++.|..+.    .....-|+..|.-+....+.-.....-.-++|++.++. +++|.++-+++..||+.+..
T Consensus       610 m~e~~iPslisil~~~~~~~~~~l~~~aidvLttvvr~tp~pL~~~l~~~~FpaVak~tlHsdD~~tlQ~~~EcLra~Is  689 (1005)
T KOG2274|consen  610 MQERLIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSPLPNLLICYAFPAVAKITLHSDDHETLQNATECLRALIS  689 (1005)
T ss_pred             hHHHHHHHHHHHHcCcccccCchhhHHHHHHHHHHHhcCCCCccHHHHHHHhHHhHhheeecCChHHHHhHHHHHHHHHh
Confidence            33457999999998665    45566677777777765443333333334578888876 67889999999999999887


Q ss_pred             cCC
Q 015851          363 VIT  365 (399)
Q Consensus       363 ~~~  365 (399)
                      .+.
T Consensus       690 ~~~  692 (1005)
T KOG2274|consen  690 VTL  692 (1005)
T ss_pred             cCH
Confidence            754

>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.60  E-value=0.2  Score=49.53  Aligned_cols=266  Identities=18%  Similarity=0.206  Sum_probs=139.6

Q ss_pred             hhHHHHhhhhhcchhhhHHHHHHHHHHHHHHcCC-hhHHHHHHhCCChHHHHhcccCCCCcccccCCCcchHHHHHHHHH
Q 015851           60 SAQVNVLNTTFSWLEADRAAAKRATHVLAELAKN-EEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAF  138 (399)
Q Consensus        60 ~~~~~~L~~~l~~~~~~~~~~~~a~~~L~~l~~~-~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~~~~~a~~  138 (399)
                      ..+.+++.+++..+  ...+..+|+..+.++... +.....     .+..|--+++++..            .+|-.|.+
T Consensus       244 s~~~~fl~s~l~~K--~emV~~EaArai~~l~~~~~r~l~p-----avs~Lq~flssp~~------------~lRfaAvR  304 (865)
T KOG1078|consen  244 SPLFPFLESCLRHK--SEMVIYEAARAIVSLPNTNSRELAP-----AVSVLQLFLSSPKV------------ALRFAAVR  304 (865)
T ss_pred             hhHHHHHHHHHhch--hHHHHHHHHHHHhhccccCHhhcch-----HHHHHHHHhcCcHH------------HHHHHHHH
Confidence            34566777777543  445677888888888762 221111     45555566666655            78899999


Q ss_pred             HHHHhc-CChhh--------HHHHHhcC---cHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhhcCc-----hhHH
Q 015851          139 ALGLLA-VKPEH--------QQLIVDNG---ALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENS-----SIKT  201 (399)
Q Consensus       139 ~L~~l~-~~~~~--------~~~i~~~~---~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~-----~~~~  201 (399)
                      +|..++ ..|..        -..+.+.+   ....+..+|+...+....    .+........++++....     ..+.
T Consensus       305 tLnkvAm~~P~~v~~cN~elE~lItd~NrsIat~AITtLLKTG~e~sv~----rLm~qI~~fv~disDeFKivvvdai~s  380 (865)
T KOG1078|consen  305 TLNKVAMKHPQAVTVCNLDLESLITDSNRSIATLAITTLLKTGTESSVD----RLMKQISSFVSDISDEFKIVVVDAIRS  380 (865)
T ss_pred             HHHHHHHhCCccccccchhHHhhhcccccchhHHHHHHHHHhcchhHHH----HHHHHHHHHHHhccccceEEeHHHHHH
Confidence            999998 54432        12222221   334445555554432211    333334444444442111     0000


Q ss_pred             H-----HHhcCChHHHHHhhcCC-CHHHHHHHHHHHHHhhcCChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHH
Q 015851          202 R-----VRMEGGIPPLVELLEFT-DTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGN  275 (399)
Q Consensus       202 ~-----~~~~~~i~~L~~ll~~~-~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~  275 (399)
                      .     ....+.++.|..+|..+ .-+.+.....++..+...+++.+.....     .|...+.+  -+...-+.+.|+-
T Consensus       381 Lc~~fp~k~~~~m~FL~~~Lr~eGg~e~K~aivd~Ii~iie~~pdsKe~~L~-----~LCefIED--ce~~~i~~rILhl  453 (865)
T KOG1078|consen  381 LCLKFPRKHTVMMNFLSNMLREEGGFEFKRAIVDAIIDIIEENPDSKERGLE-----HLCEFIED--CEFTQIAVRILHL  453 (865)
T ss_pred             HHhhccHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHhCcchhhHHHH-----HHHHHHHh--ccchHHHHHHHHH
Confidence            0     01123344455555442 2455555555665555544444432222     22222222  2334444555555


Q ss_pred             hhcCChhHHHHHHHCCCcHHHHHhhcCCChHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHhhCCCCHHHHHHHHH
Q 015851          276 LVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAF  355 (399)
Q Consensus       276 l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~v~~L~~ll~~~~~~v~~~a~~  355 (399)
                      +....+..   ..-...+..+...+.-.+..+|..|..+|.++...++..+     ..+...|..++.+.+.++|..|..
T Consensus       454 LG~EgP~a---~~Pskyir~iyNRviLEn~ivRaaAv~alaKfg~~~~~l~-----~sI~vllkRc~~D~DdevRdrAtf  525 (865)
T KOG1078|consen  454 LGKEGPKA---PNPSKYIRFIYNRVILENAIVRAAAVSALAKFGAQDVVLL-----PSILVLLKRCLNDSDDEVRDRATF  525 (865)
T ss_pred             HhccCCCC---CCcchhhHHHhhhhhhhhhhhHHHHHHHHHHHhcCCCCcc-----ccHHHHHHHHhcCchHHHHHHHHH
Confidence            54322111   1111234444444444566889999999999975443332     234456777888899999999999


Q ss_pred             HHHHhhcc
Q 015851          356 ALGRLAQV  363 (399)
Q Consensus       356 ~L~~l~~~  363 (399)
                      .|.++-..
T Consensus       526 ~l~~l~~~  533 (865)
T KOG1078|consen  526 YLKNLEEK  533 (865)
T ss_pred             HHHHhhhh
Confidence            99988833

>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]

Probab=96.47  E-value=0.89  Score=43.63  Aligned_cols=124  Identities=16%  Similarity=0.126  Sum_probs=62.4

Q ss_pred             HHHHHHHHHHHHhc-CC--hhhHHHHHhcCcHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhhcCchhHHHHHhcC
Q 015851          131 EVEKGSAFALGLLA-VK--PEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEG  207 (399)
Q Consensus       131 ~~~~~a~~~L~~l~-~~--~~~~~~i~~~~~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~  207 (399)
                      .+...+++++..++ .+  ++.-+.     .+..|-.+|++...        ..+-.|+++|..|+...|..-     .-
T Consensus       279 mV~lE~Ar~v~~~~~~nv~~~~~~~-----~vs~L~~fL~s~rv--------~~rFsA~Riln~lam~~P~kv-----~v  340 (898)
T COG5240         279 MVFLEAARAVCALSEENVGSQFVDQ-----TVSSLRTFLKSTRV--------VLRFSAMRILNQLAMKYPQKV-----SV  340 (898)
T ss_pred             hhhHHHHHHHHHHHHhccCHHHHHH-----HHHHHHHHHhcchH--------HHHHHHHHHHHHHHhhCCcee-----ee
Confidence            56667777777766 32  211111     35555556665554        667778888888886554311     11


Q ss_pred             ChHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHh
Q 015851          208 GIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNL  276 (399)
Q Consensus       208 ~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l  276 (399)
                      +=+-+-.++.+.+..+...|...|..--  .++....++..  ++.+++=++++-.-+...|++.|++.
T Consensus       341 cN~evEsLIsd~Nr~IstyAITtLLKTG--t~e~idrLv~~--I~sfvhD~SD~FKiI~ida~rsLsl~  405 (898)
T COG5240         341 CNKEVESLISDENRTISTYAITTLLKTG--TEETIDRLVNL--IPSFVHDMSDGFKIIAIDALRSLSLL  405 (898)
T ss_pred             cChhHHHHhhcccccchHHHHHHHHHcC--chhhHHHHHHH--HHHHHHhhccCceEEeHHHHHHHHhh
Confidence            1123344455555555555555544332  34444444432  44444444444334444455554444

>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]

Probab=96.43  E-value=0.03  Score=55.95  Aligned_cols=151  Identities=14%  Similarity=0.169  Sum_probs=108.3

Q ss_pred             CcHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhhcCchhHHHHH--hcCChHHHHHhhcCCCHHHHHHHHHHHHHh
Q 015851          157 GALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVR--MEGGIPPLVELLEFTDTKVQRAAAGALRTL  234 (399)
Q Consensus       157 ~~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~--~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L  234 (399)
                      .++|.+++.......        ..+..-+.+|.+...+-|.  +.+.  -...+|.|++.|.-+|..++..++.++.-+
T Consensus       867 ~ivP~l~~~~~t~~~--------~~K~~yl~~LshVl~~vP~--~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~  936 (1030)
T KOG1967|consen  867 DIVPILVSKFETAPG--------SQKHNYLEALSHVLTNVPK--QVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPML  936 (1030)
T ss_pred             hhHHHHHHHhccCCc--------cchhHHHHHHHHHHhcCCH--HhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHH
Confidence            478888888874333        4556677778887765554  2122  235678899999999999999999999888


Q ss_pred             hcCChhhHHHHHhcCCHHHHHHhhcCCC---HHHHHHHHHHHHHhhcCChhHHHHHHHCCCcHHHHHhhcCCChHHHHHH
Q 015851          235 AFKNDENKNQIVECNALPTLILMLRSED---SAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREA  311 (399)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~L~~ll~~~~---~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a  311 (399)
                      ....+.....-++. .+|.++.+=.+++   ..+|..|+.+|..|+..-|...-......++..+++.|.++..-+|++|
T Consensus       937 l~~~~tL~t~~~~T-lvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDkKRlVR~eA 1015 (1030)
T KOG1967|consen  937 LTESETLQTEHLST-LVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDKKRLVRKEA 1015 (1030)
T ss_pred             HHhccccchHHHhH-HHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCcccccccHHHHHHhhhccCcHHHHHHHHH
Confidence            86544444444443 6777777766554   5799999999999997445444444556688999999998888999998


Q ss_pred             HHHHHHh
Q 015851          312 ALLLGQF  318 (399)
Q Consensus       312 ~~~L~~l  318 (399)
                      +.+=.+.
T Consensus      1016 v~tR~~W 1022 (1030)
T KOG1967|consen 1016 VDTRQNW 1022 (1030)
T ss_pred             HHHhhhh
Confidence            8765443

>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain

Probab=96.38  E-value=0.25  Score=44.61  Aligned_cols=155  Identities=19%  Similarity=0.202  Sum_probs=103.8

Q ss_pred             HHHHHHHHHHHHhc-CChhhHHHHHhcCcHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhhcCc-hhHHH------
Q 015851          131 EVEKGSAFALGLLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENS-SIKTR------  202 (399)
Q Consensus       131 ~~~~~a~~~L~~l~-~~~~~~~~i~~~~~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~-~~~~~------  202 (399)
                      .+|..++.+|+-.+ -+.+....     .++.+.+.++..++        +++..++.++..+..... ..-..      
T Consensus        42 ~vR~~al~cLGl~~Lld~~~a~~-----~l~l~~~~~~~~~~--------~v~~~al~~l~Dll~~~g~~~~~~~~~~~~  108 (298)
T PF12719_consen   42 AVRELALKCLGLCCLLDKELAKE-----HLPLFLQALQKDDE--------EVKITALKALFDLLLTHGIDIFDSESDNDE  108 (298)
T ss_pred             HHHHHHHHHHHHHHHhChHHHHH-----HHHHHHHHHHhCCH--------HHHHHHHHHHHHHHHHcCchhccchhccCc
Confidence            89999999999999 55544332     46777788865533        899999999998885322 11111      


Q ss_pred             -HHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhhHHHHHhcCCHHHHHHh-hc---CCCHHHHHHHHHHHHHhh
Q 015851          203 -VRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILM-LR---SEDSAIHYEAVGVIGNLV  277 (399)
Q Consensus       203 -~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~L~~l-l~---~~~~~v~~~a~~~L~~l~  277 (399)
                       ......+..+...+.+.+++++..|+..++.|.....-.-    ...++..|+-+ ++   .++..++..-...+-..+
T Consensus       109 ~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~~i~~----~~~vL~~Lll~yF~p~t~~~~~LrQ~L~~Ffp~y~  184 (298)
T PF12719_consen  109 SVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSGRISD----PPKVLSRLLLLYFNPSTEDNQRLRQCLSVFFPVYA  184 (298)
T ss_pred             cchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCCc----HHHHHHHHHHHHcCcccCCcHHHHHHHHHHHHHHH
Confidence             1123456788888999999999999999999886322111    12233333332 22   245678888888888888


Q ss_pred             cCChhHHHHHHHCCCcHHHHHhhcCC
Q 015851          278 HSSPNIKKEVLAAGALQPVIGLLSSC  303 (399)
Q Consensus       278 ~~~~~~~~~~~~~~~l~~L~~lL~~~  303 (399)
                      ..++.+ +..+...+++.+..+...+
T Consensus       185 ~s~~~~-Q~~l~~~f~~~l~~~~~~~  209 (298)
T PF12719_consen  185 SSSPEN-QERLAEAFLPTLRTLSNAP  209 (298)
T ss_pred             cCCHHH-HHHHHHHHHHHHHHHHhCc
Confidence            765555 5666677778777777643

>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle

Probab=96.37  E-value=0.055  Score=43.65  Aligned_cols=132  Identities=21%  Similarity=0.187  Sum_probs=89.1

Q ss_pred             HHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhhcCchhHHHHH-hcCCh
Q 015851          131 EVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVR-MEGGI  209 (399)
Q Consensus       131 ~~~~~a~~~L~~l~~~~~~~~~i~~~~~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~-~~~~i  209 (399)
                      ++|..+.-++..+-  +..++.+.+ -+-+.+-..+.....        +-...+..++..+....+.....+. ..|++
T Consensus        20 ~~r~~a~v~l~k~l--~~~~~~~~~-~~~~~i~~~~~~~~~--------d~~i~~~~~l~~lfp~~~dv~~~l~~~eg~~   88 (157)
T PF11701_consen   20 EVRSHALVILSKLL--DAAREEFKE-KISDFIESLLDEGEM--------DSLIIAFSALTALFPGPPDVGSELFLSEGFL   88 (157)
T ss_dssp             CHHHHHHHHHHHHH--HHHHHHHHH-HHHHHHHHHHCCHHC--------CHHHHHHHHHHHHCTTTHHHHHHHCCTTTHH
T ss_pred             hHHHHHHHHHHHHH--HHhHHHHHH-HHHHHHHHHHccccc--------hhHHHHHHHHHHHhCCCHHHHHHHHhhhhHH
Confidence            68889999998884  333333322 122333333333333        3345678888888877776655554 45778


Q ss_pred             HHHHHhhc--CCCHHHHHHHHHHHHHhhcCChhhHHHHHhcCCHHHHHHhhc-CCCHH-HHHHHHHHHHH
Q 015851          210 PPLVELLE--FTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLR-SEDSA-IHYEAVGVIGN  275 (399)
Q Consensus       210 ~~L~~ll~--~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~L~~ll~-~~~~~-v~~~a~~~L~~  275 (399)
                      +.++.++.  ..+..++..++.+|..-+.  ++.+..++...+++.|-...+ ++++. ++..|+-.|..
T Consensus        89 ~~l~~~~~~~~~~~~~~~~~lell~aAc~--d~~~r~~I~~~~~~~L~~~~~~~~~~~~ir~~A~v~L~K  156 (157)
T PF11701_consen   89 ESLLPLASRKSKDRKVQKAALELLSAACI--DKSCRTFISKNYVSWLKELYKNSKDDSEIRVLAAVGLCK  156 (157)
T ss_dssp             HHHHHHHH-CTS-HHHHHHHHHHHHHHTT--SHHHHHCCHHHCHHHHHHHTTTCC-HH-CHHHHHHHHHH
T ss_pred             HHHHHHHhcccCCHHHHHHHHHHHHHHHc--cHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHhc
Confidence            88999988  7789999999999998886  455566666668999999995 45565 78888777754

Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.

>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing

Probab=96.34  E-value=0.57  Score=43.70  Aligned_cols=142  Identities=13%  Similarity=0.202  Sum_probs=100.4

Q ss_pred             HHHHHHHHHHhhc---CChhhHHHHHh-cCCHHHHHHhhcCC---CHHHHHHHHHHHHHhhcCChhHHHHHHHCCCcHHH
Q 015851          224 QRAAAGALRTLAF---KNDENKNQIVE-CNALPTLILMLRSE---DSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPV  296 (399)
Q Consensus       224 ~~~a~~~L~~L~~---~~~~~~~~~~~-~~~~~~L~~ll~~~---~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L  296 (399)
                      .+..++++..+..   +..+....+.+ ...+..|..++++.   -+.+...|+.++..+....|.....+.+.|+++.+
T Consensus        77 lK~lLk~l~~~~~~~~~~~~~lrnl~D~s~L~~sL~~Il~n~~~FG~~v~s~a~~ivs~~I~nePT~~~~l~e~Gl~~~~  156 (379)
T PF06025_consen   77 LKSLLKFLSHAMQHSGGFGDRLRNLIDSSSLLSSLKHILENPEVFGPSVFSLAINIVSDFIHNEPTSFSILQEAGLIDAF  156 (379)
T ss_pred             HHHHHHHHHHHhccCCCcccccccccchhhHHHHHHHHHhCccccchHHHHHHHHHHHHHHhcCCchhHHHHHcCChHHH
Confidence            3444455555554   22233334555 44556677777764   36889999999999998888888888899999999


Q ss_pred             HHhhc-C---CChHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHhhCCCCH-------HHHHHHHHHHHHhhccCC
Q 015851          297 IGLLS-S---CCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDV-------QLREMSAFALGRLAQVIT  365 (399)
Q Consensus       297 ~~lL~-~---~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~v~~L~~ll~~~~~-------~v~~~a~~~L~~l~~~~~  365 (399)
                      ++.+. .   ++.++....-.+++.+|- +..+.+.+.+.+.++.+.+++.+++.       +........+-.|.++.|
T Consensus       157 L~~i~~~~i~~s~e~l~~lP~~l~AicL-N~~Gl~~~~~~~~l~~~f~if~s~~~~~~l~~~d~a~~lG~~~DEL~RH~p  235 (379)
T PF06025_consen  157 LDAITAKGILPSSEVLTSLPNVLSAICL-NNRGLEKVKSSNPLDKLFEIFTSPDYVKALRRRDTASNLGNSFDELMRHHP  235 (379)
T ss_pred             HHHHhccCCCCcHHHHHHHHHHHhHHhc-CHHHHHHHHhcChHHHHHHHhCCHHHHHHhcccchHHHHHHHHHHHHccCH
Confidence            99987 3   344666666678888885 68999999999999999999976432       333444456666777776


Q ss_pred             C
Q 015851          366 V  366 (399)
Q Consensus       366 ~  366 (399)
                      .
T Consensus       236 ~  236 (379)
T PF06025_consen  236 S  236 (379)
T ss_pred             H
Confidence            3

This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.

>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain

Probab=96.34  E-value=0.12  Score=46.67  Aligned_cols=144  Identities=20%  Similarity=0.190  Sum_probs=102.4

Q ss_pred             CHHHHH-HhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHHCCCcHHHHHhhcCCChHHHHHHHHHHHHhhccC-hhhHH
Q 015851          250 ALPTLI-LMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATD-SDCKV  327 (399)
Q Consensus       250 ~~~~L~-~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~-~~~~~  327 (399)
                      .+..|+ ..++++++.+|..|+.+||-.+.-+.....     ..++.+...++.++..++..|+.++..+.... .....
T Consensus        27 ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~~~a~-----~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~~~  101 (298)
T PF12719_consen   27 LLDSLILPAVQSSDPAVRELALKCLGLCCLLDKELAK-----EHLPLFLQALQKDDEEVKITALKALFDLLLTHGIDIFD  101 (298)
T ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhChHHHH-----HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchhcc
Confidence            344343 667888999999999999999865543322     23667777787778899999999999887532 22211


Q ss_pred             H-------HHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhccCCCC----cchhHHHHHhhccc-cHHHHHHHHhhhHh
Q 015851          328 H-------IVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQVITVS----VLPAILIFIIINEC-QLEVLAFVLSEMVL  395 (399)
Q Consensus       328 ~-------l~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~----~~~~~~~~~~~~~~-~~~~~~~~l~~~~~  395 (399)
                      .       .....+++.+.+.+.+.+++++..|+..++.|--.+.-.    ++..++..+..+.. ...-+.++++.|.-
T Consensus       102 ~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~~i~~~~~vL~~Lll~yF~p~t~~~~~LrQ~L~~Ffp  181 (298)
T PF12719_consen  102 SESDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSGRISDPPKVLSRLLLLYFNPSTEDNQRLRQCLSVFFP  181 (298)
T ss_pred             chhccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCcccCCcHHHHHHHHHHHH
Confidence            1       122456788888888889999999999999987665533    34444444444444 44789999999988


Q ss_pred             hhc
Q 015851          396 LFC  398 (399)
Q Consensus       396 ~~~  398 (399)
                      +||
T Consensus       182 ~y~  184 (298)
T PF12719_consen  182 VYA  184 (298)
T ss_pred             HHH
Confidence            887

>KOG1248 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.33  E-value=0.19  Score=51.91  Aligned_cols=225  Identities=16%  Similarity=0.145  Sum_probs=126.9

Q ss_pred             hhHHHHHHHHHHHHHHcCChhHHHHHHh--CCChHHHHhcccCCCCcccccCCCcchHHHHHHHHHHHHHhc--CChhhH
Q 015851           75 ADRAAAKRATHVLAELAKNEEVVNWIVE--GGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA--VKPEHQ  150 (399)
Q Consensus        75 ~~~~~~~~a~~~L~~l~~~~~~~~~~~~--~g~l~~L~~lL~~~~~~~~~~~~~~~~~~~~~~a~~~L~~l~--~~~~~~  150 (399)
                      .+..+|.++.+.|..++..+.......+  ..+...|..-+++...            ..+...+.+|..+-  .+.+..
T Consensus       666 ~~~~vQkK~yrlL~~l~~~~s~~~~~~q~i~~I~n~L~ds~qs~~~------------~~~~~rl~~L~~L~~~~~~e~~  733 (1176)
T KOG1248|consen  666 SSTKVQKKAYRLLEELSSSPSGEGLVEQRIDDIFNSLLDSFQSSSS------------PAQASRLKCLKRLLKLLSAEHC  733 (1176)
T ss_pred             ccHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHhccch------------HHHHHHHHHHHHHHHhccHHHH
Confidence            3567899999999999887433322221  1334444444444333            56777778888877  223444


Q ss_pred             HHHHhcCcHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhh-----cCchhHHHHHhcCChHHHHHhhcCCCHHHHH
Q 015851          151 QLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAH-----ENSSIKTRVRMEGGIPPLVELLEFTDTKVQR  225 (399)
Q Consensus       151 ~~i~~~~~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~-----~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~  225 (399)
                      ..+..  .|+.++-.++..+.        ..++.+..+|.+++.     ...+-+....-..+++.+..-+-.+......
T Consensus       734 ~~i~k--~I~EvIL~~Ke~n~--------~aR~~Af~lL~~i~~i~~~~d~g~e~~~~~lnefl~~Isagl~gd~~~~~a  803 (1176)
T KOG1248|consen  734 DLIPK--LIPEVILSLKEVNV--------KARRNAFALLVFIGAIQSSLDDGNEPASAILNEFLSIISAGLVGDSTRVVA  803 (1176)
T ss_pred             HHHHH--HHHHHHHhcccccH--------HHHhhHHHHHHHHHHHHhhhcccccchHHHHHHHHHHHHhhhcccHHHHHH
Confidence            44433  34554444444444        677778888877772     0000000001112233333332232232222


Q ss_pred             HHHHHHHHhhcCChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHHCCCcHHHHHhhcCCCh
Q 015851          226 AAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCS  305 (399)
Q Consensus       226 ~a~~~L~~L~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~  305 (399)
                      ..+-++..+............-.+.+..+...|.++.++++..|++.+..++...+...-......+++.+..+++....
T Consensus       804 s~Ivai~~il~e~~~~ld~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l~~~~~~LL~sll~ls~d~k~  883 (1176)
T KOG1248|consen  804 SDIVAITHILQEFKNILDDETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEECLSPHLEELLPSLLALSHDHKI  883 (1176)
T ss_pred             HHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHHhhhHHHHHHHHHHHHHhhhH
Confidence            22444444443222211111112345555566778999999999999999997766654444444578888888887777


Q ss_pred             HHHHHHHHHHHHhhcc
Q 015851          306 ESQREAALLLGQFAAT  321 (399)
Q Consensus       306 ~v~~~a~~~L~~l~~~  321 (399)
                      .++...-..|-.|...
T Consensus       884 ~~r~Kvr~LlekLirk  899 (1176)
T KOG1248|consen  884 KVRKKVRLLLEKLIRK  899 (1176)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            8888877777777654

>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1

Probab=96.33  E-value=0.075  Score=46.05  Aligned_cols=99  Identities=12%  Similarity=0.155  Sum_probs=84.8

Q ss_pred             HHHHHHHHHHHHhc-CChhhHHHHHhcCcHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhhcCchhHHHHHhcCCh
Q 015851          131 EVEKGSAFALGLLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGI  209 (399)
Q Consensus       131 ~~~~~a~~~L~~l~-~~~~~~~~i~~~~~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i  209 (399)
                      .....|+.+|.-++ -+|..+..+.+...+..++.+|......       .++..++.+|..+..+++.+...+...+|+
T Consensus       106 ~li~~aL~vLQGl~LLHp~Sr~lF~r~~~m~lll~LL~~~~~~-------~i~~a~L~tLv~iLld~p~N~r~FE~~~Gl  178 (257)
T PF08045_consen  106 SLIALALRVLQGLCLLHPPSRKLFHREQNMELLLDLLSPSNPP-------AIQSACLDTLVCILLDSPENQRDFEELNGL  178 (257)
T ss_pred             HHHHHHHHHHHHHHHcCchHHHHHhhhhhHHHHHHHhccCCCc-------hHHHHHHHHHHHHHHcChHHHHHHHHhCCH
Confidence            45667889999999 9999999999999999999999554433       888999999999998999888889999999


Q ss_pred             HHHHHhhcCCC--HHHHHHHHHHHHHhhc
Q 015851          210 PPLVELLEFTD--TKVQRAAAGALRTLAF  236 (399)
Q Consensus       210 ~~L~~ll~~~~--~~v~~~a~~~L~~L~~  236 (399)
                      ..++.++++..  .+++-.....|.-...
T Consensus       179 ~~v~~llk~~~~~~~~r~K~~EFL~fyl~  207 (257)
T PF08045_consen  179 STVCSLLKSKSTDRELRLKCIEFLYFYLM  207 (257)
T ss_pred             HHHHHHHccccccHHHhHHHHHHHHHHHc
Confidence            99999998764  6788888888876665

Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].

>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.32  E-value=0.088  Score=51.98  Aligned_cols=158  Identities=23%  Similarity=0.266  Sum_probs=113.7

Q ss_pred             HHHHHHHHHhc-CChhhHHHHHhcCcHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhhcCchhHHHHHh-cCChHH
Q 015851          134 KGSAFALGLLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRM-EGGIPP  211 (399)
Q Consensus       134 ~~a~~~L~~l~-~~~~~~~~i~~~~~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~-~~~i~~  211 (399)
                      ..++.++.||+ .+...++.+...-+++.+-.++...+.        .++..++..+.||..+..-....+.+ ....+.
T Consensus       560 ~E~L~altnLas~s~s~r~~i~ke~~~~~ie~~~~ee~~--------~lqraa~e~~~NLl~~~~~~e~si~e~~~~l~~  631 (748)
T KOG4151|consen  560 FEALEALTNLASISESDRQKILKEKALGKIEELMTEENP--------ALQRAALESIINLLWSPLLYERSIVEYKDRLKL  631 (748)
T ss_pred             HHHHHHhhcccCcchhhHHHHHHHhcchhhHHHhhcccH--------HHHHHHHHHHHHHHhhHHHHHHHhhccccCchH
Confidence            46788999999 777778778877777776666665555        78899999999999654444444444 356777


Q ss_pred             HHHhhcCCCHHHHHHHHHHHHHhhcCChhhHHHHHh-cCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHHC
Q 015851          212 LVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVE-CNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAA  290 (399)
Q Consensus       212 L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~-~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~  290 (399)
                      ...++...++....++++++..++.-....+..+.+ ......++.++.+.+.+++...+..+.|+.....+....+...
T Consensus       632 w~~~~e~~~E~~~lA~a~a~a~I~sv~~n~c~~~~~~~~~~e~~~~~i~~~~~~~qhrgl~~~ln~~~~~~ei~~~~~~~  711 (748)
T KOG4151|consen  632 WNLNLEVADEKFELAGAGALAAITSVVENHCSRILELLEWLEILVRAIQDEDDEIQHRGLVIILNLFEALFEIAEKIFET  711 (748)
T ss_pred             HHHHHHhhhhHHhhhccccccchhhcchhhhhhHHHhhcchHHHHHhhcCchhhhhhhhhhhhhhHHHHHHHHHHHhccc
Confidence            777777777888889999998777744444543333 5677889999999999999999999999765444444455555


Q ss_pred             CCcHHHHHh
Q 015851          291 GALQPVIGL  299 (399)
Q Consensus       291 ~~l~~L~~l  299 (399)
                      ..+..+..+
T Consensus       712 ~~~~~l~~~  720 (748)
T KOG4151|consen  712 EVMELLSGL  720 (748)
T ss_pred             hHHHHHHHH
Confidence            555444443

>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function

Probab=96.30  E-value=0.046  Score=45.44  Aligned_cols=124  Identities=14%  Similarity=0.094  Sum_probs=85.2

Q ss_pred             cCCCHHHHHHHHHHHHHhhcCChhhHHHHHhc----------------CCHHHHHHhhcC------CCHHHHHHHHHHHH
Q 015851          217 EFTDTKVQRAAAGALRTLAFKNDENKNQIVEC----------------NALPTLILMLRS------EDSAIHYEAVGVIG  274 (399)
Q Consensus       217 ~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~----------------~~~~~L~~ll~~------~~~~v~~~a~~~L~  274 (399)
                      .+++......++..|.||+. .+.++..+.+.                ..+..|+..+..      +...-..+.+.++.
T Consensus         5 ~~~~~~~adl~~MLLsNlT~-~~~~~~~ll~~~~~~~~~~~~~~~~~~~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl~   83 (192)
T PF04063_consen    5 TDPKSPLADLACMLLSNLTR-SDSGCEKLLQLKRESSSQAPKEVSLSGFYLDKLLDLFVKGADPSYNKKDNYDYLASVLA   83 (192)
T ss_pred             cCCCcchHHHHHHHHHHhcc-chHHHHHHHhcccccccccccccchhHHHHHHHHHHHHcCCcccCCCCcchhHHHHHHH
Confidence            34455567778889999997 56666655442                245566666654      33456778899999


Q ss_pred             HhhcCChhHHHHHHHCC--C--cHHHHHhhcCCChHHHHHHHHHHHHhhccChhhHHHHHh---cCCHHHHHHhhC
Q 015851          275 NLVHSSPNIKKEVLAAG--A--LQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQ---RGAVRPLIEMLQ  343 (399)
Q Consensus       275 ~l~~~~~~~~~~~~~~~--~--l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~---~g~v~~L~~ll~  343 (399)
                      |++.. +..+..+.+..  .  +..|+.++.+.+..-|.-++.+|.|+|-. .+.-..+..   .+++|.|+--+.
T Consensus        84 NlS~~-~~gR~~~l~~~~~~~~l~kLl~ft~~~s~iRR~Gva~~IrNccFd-~~~H~~LL~~~~~~iLp~LLlPLa  157 (192)
T PF04063_consen   84 NLSQL-PEGRQFFLDPQRYDGPLQKLLPFTEHKSVIRRGGVAGTIRNCCFD-TDSHEWLLSDDEVDILPYLLLPLA  157 (192)
T ss_pred             HhcCC-HHHHHHHhCchhhhhHHHHHHHHhccCcHHHHHHHHHHHHHhhcc-HhHHHHhcCchhhhhHHHHHhhcc
Confidence            99965 78888887543  3  77888888888766677788999999965 444444544   356666666554

It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).

>KOG2956 consensus CLIP-associating protein [General function prediction only]

Probab=96.28  E-value=0.4  Score=44.69  Aligned_cols=174  Identities=13%  Similarity=0.113  Sum_probs=105.0

Q ss_pred             HHHHHHHHHHHH-HhhcCchhHHHHHhcCChHHHHHhhcC-CCHHHHHHHHHHHHHhhcCChhhHHHHHhcCCHHHHHHh
Q 015851          180 SVIRRAADAITN-LAHENSSIKTRVRMEGGIPPLVELLEF-TDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILM  257 (399)
Q Consensus       180 ~~~~~a~~~L~~-l~~~~~~~~~~~~~~~~i~~L~~ll~~-~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~L~~l  257 (399)
                      +-+..++.-|.. ++.+.-...+... ...+..+++.|.+ .++.++..|++.|..++...+.....-.+. ++..++..
T Consensus       302 ~~~k~alsel~~m~~e~sfsvWeq~f-~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~l~DstE~-ai~K~Lea  379 (516)
T KOG2956|consen  302 SERKEALSELPKMLCEGSFSVWEQHF-AEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPARLFDSTEI-AICKVLEA  379 (516)
T ss_pred             hHHHHHHHHHHHHHHccchhHHHHHH-HHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchHhhhchHHH-HHHHHHHH
Confidence            344455553433 4433333333222 2234567777877 678899999999999998544322222221 34445555


Q ss_pred             hcCCCHHHHHHHHHH-HHHhhcCChhHHHHHHHCCCcHHHHHhhcCCChHHHHHHHHHHHHhhccChhhHHHHHh--cCC
Q 015851          258 LRSEDSAIHYEAVGV-IGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQ--RGA  334 (399)
Q Consensus       258 l~~~~~~v~~~a~~~-L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~--~g~  334 (399)
                      -.+.++++...|... +..++...+...        +..+..++.+.+...-..++..+..+...  -..+.+..  ..+
T Consensus       380 a~ds~~~v~~~Aeed~~~~las~~P~~~--------I~~i~~~Ilt~D~~~~~~~iKm~Tkl~e~--l~~EeL~~ll~di  449 (516)
T KOG2956|consen  380 AKDSQDEVMRVAEEDCLTTLASHLPLQC--------IVNISPLILTADEPRAVAVIKMLTKLFER--LSAEELLNLLPDI  449 (516)
T ss_pred             HhCCchhHHHHHHHHHHHHHHhhCchhH--------HHHHhhHHhcCcchHHHHHHHHHHHHHhh--cCHHHHHHhhhhh
Confidence            555666666555554 444444444331        33344445455555555666677777743  23333333  578


Q ss_pred             HHHHHHhhCCCCHHHHHHHHHHHHHhhccCC
Q 015851          335 VRPLIEMLQSPDVQLREMSAFALGRLAQVIT  365 (399)
Q Consensus       335 v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~  365 (399)
                      .|.+++--.+.+..||+.|+.+|..+...-+
T Consensus       450 aP~~iqay~S~SS~VRKtaVfCLVamv~~vG  480 (516)
T KOG2956|consen  450 APCVIQAYDSTSSTVRKTAVFCLVAMVNRVG  480 (516)
T ss_pred             hhHHHHHhcCchHHhhhhHHHhHHHHHHHHh
Confidence            8999999999999999999999999887666

>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []

Probab=96.22  E-value=0.0076  Score=33.61  Aligned_cols=28  Identities=21%  Similarity=0.481  Sum_probs=25.2

Q ss_pred             HHHHHHhhcCCCHHHHHHHHHHHHHhhc
Q 015851          251 LPTLILMLRSEDSAIHYEAVGVIGNLVH  278 (399)
Q Consensus       251 ~~~L~~ll~~~~~~v~~~a~~~L~~l~~  278 (399)
                      +|.+++++++++++||..|+.+|+.++.
T Consensus         2 lp~l~~~l~D~~~~VR~~a~~~l~~i~~   29 (31)
T PF02985_consen    2 LPILLQLLNDPSPEVRQAAAECLGAIAE   29 (31)
T ss_dssp             HHHHHHHHT-SSHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence            7889999999999999999999999974

Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....

>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle

Probab=96.18  E-value=0.042  Score=44.33  Aligned_cols=145  Identities=22%  Similarity=0.289  Sum_probs=94.4

Q ss_pred             hHHHHHhhc--CCCHHHHHHHHHHHHHhhcCChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHH
Q 015851          209 IPPLVELLE--FTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKE  286 (399)
Q Consensus       209 i~~L~~ll~--~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~  286 (399)
                      +..++..|.  ...+++|..++-++..+.   +..++.+.+. +-+.+-..+...+.+-...+..++..+--..++....
T Consensus         5 l~~lL~~L~~~~~~~~~r~~a~v~l~k~l---~~~~~~~~~~-~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~~dv~~~   80 (157)
T PF11701_consen    5 LDTLLTSLDMLRQPEEVRSHALVILSKLL---DAAREEFKEK-ISDFIESLLDEGEMDSLIIAFSALTALFPGPPDVGSE   80 (157)
T ss_dssp             CCHHHHHHHCTTTSCCHHHHHHHHHHHHH---HHHHHHHHHH-HHHHHHHHHCCHHCCHHHHHHHHHHHHCTTTHHHHHH
T ss_pred             HHHHHHHhcccCCCHhHHHHHHHHHHHHH---HHhHHHHHHH-HHHHHHHHHccccchhHHHHHHHHHHHhCCCHHHHHH
Confidence            444555544  355778888888888774   3333333321 2233444455444456667888888887666665555


Q ss_pred             HH-HCCCcHHHHHhhc--CCChHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHhhC-CCCHH-HHHHHHHHHHH
Q 015851          287 VL-AAGALQPVIGLLS--SCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQ-SPDVQ-LREMSAFALGR  359 (399)
Q Consensus       287 ~~-~~~~l~~L~~lL~--~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~v~~L~~ll~-~~~~~-v~~~a~~~L~~  359 (399)
                      ++ ..|+++.++.++.  +.+..++..++.+|..-|. +..++ ..+...+++.|.++.+ +++.. ++..|+-+|..
T Consensus        81 l~~~eg~~~~l~~~~~~~~~~~~~~~~~lell~aAc~-d~~~r-~~I~~~~~~~L~~~~~~~~~~~~ir~~A~v~L~K  156 (157)
T PF11701_consen   81 LFLSEGFLESLLPLASRKSKDRKVQKAALELLSAACI-DKSCR-TFISKNYVSWLKELYKNSKDDSEIRVLAAVGLCK  156 (157)
T ss_dssp             HCCTTTHHHHHHHHHH-CTS-HHHHHHHHHHHHHHTT-SHHHH-HCCHHHCHHHHHHHTTTCC-HH-CHHHHHHHHHH
T ss_pred             HHhhhhHHHHHHHHHhcccCCHHHHHHHHHHHHHHHc-cHHHH-HHHHHHHHHHHHHHHccccchHHHHHHHHHHHhc
Confidence            54 6788899999998  7788889999998888763 44454 4445557899999995 55566 77777776654

Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.

>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]

Probab=96.09  E-value=0.54  Score=46.34  Aligned_cols=102  Identities=21%  Similarity=0.288  Sum_probs=75.0

Q ss_pred             CHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHHCCCcHHHHHh-hcCCChHHHHHHHHHHHHhhccChhhHHH
Q 015851          250 ALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGL-LSSCCSESQREAALLLGQFAATDSDCKVH  328 (399)
Q Consensus       250 ~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~l-L~~~~~~v~~~a~~~L~~l~~~~~~~~~~  328 (399)
                      +=+.+-.++.+.++-+|.....+++---.+...       .+++..|++. .+..+.+|++.|..+|+-++..+++.   
T Consensus       520 Ad~lI~el~~dkdpilR~~Gm~t~alAy~GTgn-------nkair~lLh~aVsD~nDDVrRaAVialGFVl~~dp~~---  589 (929)
T KOG2062|consen  520 ADPLIKELLRDKDPILRYGGMYTLALAYVGTGN-------NKAIRRLLHVAVSDVNDDVRRAAVIALGFVLFRDPEQ---  589 (929)
T ss_pred             hHHHHHHHhcCCchhhhhhhHHHHHHHHhccCc-------hhhHHHhhcccccccchHHHHHHHHHheeeEecChhh---
Confidence            344555677778888887776665532222222       3467777777 66788899999999999998877766   


Q ss_pred             HHhcCCHHHHHHhh-CCCCHHHHHHHHHHHHHhhccCCCC
Q 015851          329 IVQRGAVRPLIEML-QSPDVQLREMSAFALGRLAQVITVS  367 (399)
Q Consensus       329 l~~~g~v~~L~~ll-~~~~~~v~~~a~~~L~~l~~~~~~~  367 (399)
                            ++..+.+| .+-++.||..++-+|+-.|..+.++
T Consensus       590 ------~~s~V~lLses~N~HVRyGaA~ALGIaCAGtG~~  623 (929)
T KOG2062|consen  590 ------LPSTVSLLSESYNPHVRYGAAMALGIACAGTGLK  623 (929)
T ss_pred             ------chHHHHHHhhhcChhhhhhHHHHHhhhhcCCCcH
Confidence                  44555666 4679999999999999999988875

>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5

Probab=96.05  E-value=0.04  Score=37.63  Aligned_cols=68  Identities=18%  Similarity=0.277  Sum_probs=58.4

Q ss_pred             HHHHHHHHHHHcCChhHHHHHHhCCChHHHHhcccCCCCcccccCCCcchHHHHHHHHHHHHHhcCChhhHHHHHhcCc
Q 015851           80 AKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIVDNGA  158 (399)
Q Consensus        80 ~~~a~~~L~~l~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~~~  158 (399)
                      ...|+|+++++++.+.....+-+.++++.++++..+.+.-           .+|--|..+|+-++.+.+..+.+.+.|-
T Consensus         4 lKaaLWaighIgss~~G~~lL~~~~iv~~iv~~a~~s~v~-----------siRGT~fy~Lglis~T~~G~~~L~~~gW   71 (73)
T PF14668_consen    4 LKAALWAIGHIGSSPLGIQLLDESDIVEDIVKIAENSPVL-----------SIRGTCFYVLGLISSTEEGAEILDELGW   71 (73)
T ss_pred             HHHHHHHHHhHhcChHHHHHHhhcCHHHHHHHHHHhCCcc-----------chHHHHHHHHHHHhCCHHHHHHHHHcCC
Confidence            4579999999999988888888889999999999876553           6888999999999999999888777663

>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]

Probab=95.96  E-value=1.2  Score=45.80  Aligned_cols=243  Identities=20%  Similarity=0.226  Sum_probs=134.4

Q ss_pred             CChHHHHhcccCCCCcccccCCCcchHHHHHHHHHHHHHhc-CChhhHHHHHhcCcHHHHHHHHhccccCccccccHHHH
Q 015851          104 GAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVI  182 (399)
Q Consensus       104 g~l~~L~~lL~~~~~~~~~~~~~~~~~~~~~~a~~~L~~l~-~~~~~~~~i~~~~~i~~L~~~L~~~~~~~~~~~~~~~~  182 (399)
                      +++..|++-+++.+.            .+|=-|++.++.++ ..|  ... + ...+...+.++.-.+++       ...
T Consensus       341 ~vie~Lls~l~d~dt------------~VrWSaAKg~grvt~rlp--~~L-a-d~vi~svid~~~p~e~~-------~aW  397 (1133)
T KOG1943|consen  341 FVIEHLLSALSDTDT------------VVRWSAAKGLGRVTSRLP--PEL-A-DQVIGSVIDLFNPAEDD-------SAW  397 (1133)
T ss_pred             HHHHHHHHhccCCcc------------hhhHHHHHHHHHHHccCc--HHH-H-HHHHHHHHHhcCcCCch-------hHH
Confidence            556777777777776            56668999999999 555  111 1 12566666655544433       667


Q ss_pred             HHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhhcCC--------CHHHHHHHHHHHHHhhcCChhh-HHHHHhcCCHHH
Q 015851          183 RRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFT--------DTKVQRAAAGALRTLAFKNDEN-KNQIVECNALPT  253 (399)
Q Consensus       183 ~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~--------~~~v~~~a~~~L~~L~~~~~~~-~~~~~~~~~~~~  253 (399)
                      .-+|-+|+.|+...--....+  ..++|.++.-|.-+        ...||..|+.++|.++..+... .+.+.+.=+-..
T Consensus       398 HgacLaLAELA~rGlLlps~l--~dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~~L~s~L  475 (1133)
T KOG1943|consen  398 HGACLALAELALRGLLLPSLL--EDVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQSLASAL  475 (1133)
T ss_pred             HHHHHHHHHHHhcCCcchHHH--HHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHHHHHHHH
Confidence            788999999985332111111  24566666655432        3568999999999999754332 222333211223


Q ss_pred             HHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHHCCCcHHHHHhhcCCChHHHHHHHHHHHHhhccChhhHHHHHhcC
Q 015851          254 LILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRG  333 (399)
Q Consensus       254 L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g  333 (399)
                      |...+-+++-..|+.|..++........+.      ..+++ ++...+.-+...+.++-..|..-.+..+..+..+++. 
T Consensus       476 L~~AlFDrevncRRAAsAAlqE~VGR~~n~------p~Gi~-Lis~~dy~sV~~rsNcy~~l~~~ia~~~~y~~~~f~~-  547 (1133)
T KOG1943|consen  476 LIVALFDREVNCRRAASAALQENVGRQGNF------PHGIS-LISTIDYFSVTNRSNCYLDLCVSIAEFSGYREPVFNH-  547 (1133)
T ss_pred             HHHHhcCchhhHhHHHHHHHHHHhccCCCC------CCchh-hhhhcchhhhhhhhhHHHHHhHHHHhhhhHHHHHHHH-
Confidence            344556777889999988887665211110      00111 1111221122233333333333222223333333222 


Q ss_pred             CHHHHHHhhCCCCHHHHHHHHHHHHHhhccCCC----CcchhHHHHHhhcccc
Q 015851          334 AVRPLIEMLQSPDVQLREMSAFALGRLAQVITV----SVLPAILIFIIINECQ  382 (399)
Q Consensus       334 ~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~----~~~~~~~~~~~~~~~~  382 (399)
                         .+.+-+.+=+..+++-++++|.+|+...+.    ..+|+++......+..
T Consensus       548 ---L~t~Kv~HWd~~irelaa~aL~~Ls~~~pk~~a~~~L~~lld~~ls~~~~  597 (1133)
T KOG1943|consen  548 ---LLTKKVCHWDVKIRELAAYALHKLSLTEPKYLADYVLPPLLDSTLSKDAS  597 (1133)
T ss_pred             ---HHhcccccccHHHHHHHHHHHHHHHHhhHHhhcccchhhhhhhhcCCChH
Confidence               111113345889999999999999987775    3567766665555443

>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=95.95  E-value=0.1  Score=53.81  Aligned_cols=162  Identities=21%  Similarity=0.259  Sum_probs=120.2

Q ss_pred             hhhHHHHhhhhhcc--hhhhHHHHHHHHHHHHHHcC-ChhHHHHHHhCCChHHHHhcccC-CCCcccccCCCcchHHHHH
Q 015851           59 VSAQVNVLNTTFSW--LEADRAAAKRATHVLAELAK-NEEVVNWIVEGGAVPALVKHLQA-PPTSEADRNLKPFEHEVEK  134 (399)
Q Consensus        59 ~~~~~~~L~~~l~~--~~~~~~~~~~a~~~L~~l~~-~~~~~~~~~~~g~l~~L~~lL~~-~~~~~~~~~~~~~~~~~~~  134 (399)
                      ..++.|++...++.  -..++++|..|.-+|+.++. +.+.+..-     +|.|+..+.. +.+            -+|.
T Consensus       917 Lg~f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~iSa~fces~-----l~llftimeksp~p------------~IRs  979 (1251)
T KOG0414|consen  917 LGRFAPIVVEGCRNPGLFSDPELQAAATLALGKLMCISAEFCESH-----LPLLFTIMEKSPSP------------RIRS  979 (1251)
T ss_pred             HHHHHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhhhHHHHHHH-----HHHHHHHHhcCCCc------------eeee
Confidence            45677777777752  23568899999999999988 56665543     7888888884 444            6777


Q ss_pred             HHHHHHHHhc-CChhhHHHHHhcCcHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHH
Q 015851          135 GSAFALGLLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLV  213 (399)
Q Consensus       135 ~a~~~L~~l~-~~~~~~~~i~~~~~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~  213 (399)
                      +++-+++-++ ..|..-+.     ..+.|...|.+.+.        .+++.+.-+|.+|...+     ++.-.|.++.+.
T Consensus       980 N~VvalgDlav~fpnlie~-----~T~~Ly~rL~D~~~--------~vRkta~lvlshLILnd-----miKVKGql~eMA 1041 (1251)
T KOG0414|consen  980 NLVVALGDLAVRFPNLIEP-----WTEHLYRRLRDESP--------SVRKTALLVLSHLILND-----MIKVKGQLSEMA 1041 (1251)
T ss_pred             cchheccchhhhcccccch-----hhHHHHHHhcCccH--------HHHHHHHHHHHHHHHhh-----hhHhcccHHHHH
Confidence            9999999999 66655443     45677777877776        89999999999999532     566689999999


Q ss_pred             HhhcCCCHHHHHHHHHHHHHhhcCChhhHHHHHhcCCHHHHHHhhcCC
Q 015851          214 ELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSE  261 (399)
Q Consensus       214 ~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~L~~ll~~~  261 (399)
                      .++.++++.++..|=..+..|+.....    +  .+.+|-++.-|.++
T Consensus      1042 ~cl~D~~~~IsdlAk~FF~Els~k~n~----i--ynlLPdil~~Ls~~ 1083 (1251)
T KOG0414|consen 1042 LCLEDPNAEISDLAKSFFKELSSKGNT----I--YNLLPDILSRLSNG 1083 (1251)
T ss_pred             HHhcCCcHHHHHHHHHHHHHhhhcccc----h--hhhchHHHHhhccC
Confidence            999999999999999888888863211    1  12455555555543

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=95.92  E-value=0.8  Score=46.14  Aligned_cols=124  Identities=15%  Similarity=0.196  Sum_probs=81.2

Q ss_pred             HHHHHhcCCHHHHHHhhcC--------CCHHHHHHHHHHHHHhhcCChhHHHHHHHC--------CCcHHHHHhhc----
Q 015851          242 KNQIVECNALPTLILMLRS--------EDSAIHYEAVGVIGNLVHSSPNIKKEVLAA--------GALQPVIGLLS----  301 (399)
Q Consensus       242 ~~~~~~~~~~~~L~~ll~~--------~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~--------~~l~~L~~lL~----  301 (399)
                      .+.+.+.+++..++.+..-        +..++...|+.+|+-+.. -|..+..+..+        .++..++..-.    
T Consensus       594 aenflkls~v~~~L~l~~~~~~w~~~spR~d~~~~Al~vL~i~t~-iP~iq~~La~~~~~n~~aydGiaIiL~~a~g~~~  672 (1516)
T KOG1832|consen  594 AENFLKLSGVVTMLELCQTPPVWRYLSPRHDLLQYALGVLHIVTS-IPDIQKALAHATLSNNRAYDGIAIILDAANGSNS  672 (1516)
T ss_pred             HHHHHHhHHHHHHHHHHhcCccccccCcchHHHHHHHhheeeeEe-cchHHHHHHHHHhhcccccCceEEEeeccccccc
Confidence            3445666667777776653        224677778888876654 35555555422        13443433322    


Q ss_pred             CCChHHHHHHHHHHHHhhccChhhHHH-----------------------------------HHhcCCHHHHHHhhCC--
Q 015851          302 SCCSESQREAALLLGQFAATDSDCKVH-----------------------------------IVQRGAVRPLIEMLQS--  344 (399)
Q Consensus       302 ~~~~~v~~~a~~~L~~l~~~~~~~~~~-----------------------------------l~~~g~v~~L~~ll~~--  344 (399)
                      -.+++++..|+.+|.|+....|+++..                                   +...++|..|+++++.  
T Consensus       673 i~Dpei~~~AL~vIincVc~pp~~r~s~i~~v~S~~g~~r~~l~~~~ks~~le~~l~~mw~~Vr~ndGIkiLl~Ll~~k~  752 (1516)
T KOG1832|consen  673 IVDPEIIQPALNVIINCVCPPPTTRPSTIVAVGSQSGDRRIFLGAGTKSAKLEQVLRQMWEAVRGNDGIKILLKLLQYKN  752 (1516)
T ss_pred             ccCHHHHHHHHhhhheeecCCCCcchhhhhhccccCCCccccccCCCchHHHHHHHHHHHHHHhcCccHHHHHHHHhccC
Confidence            237899999999999998654333221                                   2336789999999974  


Q ss_pred             ---CCHHHHHHHHHHHHHhhccCCC
Q 015851          345 ---PDVQLREMSAFALGRLAQVITV  366 (399)
Q Consensus       345 ---~~~~v~~~a~~~L~~l~~~~~~  366 (399)
                         .-..+|..|+.+|.-|++++.-
T Consensus       753 P~t~aD~IRalAc~~L~GLaR~~tV  777 (1516)
T KOG1832|consen  753 PPTTADCIRALACRVLLGLARDDTV  777 (1516)
T ss_pred             CCCcHHHHHHHHHHHHhccccCcHH
Confidence               2356899999999999998874

>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins

Probab=95.92  E-value=0.59  Score=44.45  Aligned_cols=115  Identities=16%  Similarity=0.128  Sum_probs=81.7

Q ss_pred             CHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhH--------HHHHHHCC----CcHHHHHhhcCCChHHHHHHHHHHHH
Q 015851          250 ALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNI--------KKEVLAAG----ALQPVIGLLSSCCSESQREAALLLGQ  317 (399)
Q Consensus       250 ~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~--------~~~~~~~~----~l~~L~~lL~~~~~~v~~~a~~~L~~  317 (399)
                      .+..|+.++.+  +++...++.+++-+....+..        .+.+....    .+|.+++..+..+...+.+-..+|++
T Consensus       272 ~~~~L~~lL~~--~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~~~~~~k~~yL~ALs~  349 (415)
T PF12460_consen  272 LLDKLLELLSS--PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGFKEADDEIKSNYLTALSH  349 (415)
T ss_pred             HHHHHHHHhCC--hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHHHHHHHHHHHhhcChhhHHHHHHHHHH
Confidence            35557777766  778888999998887542222        22333333    46666666666666688888889999


Q ss_pred             hhccChhhHHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhccCCC
Q 015851          318 FAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQVITV  366 (399)
Q Consensus       318 l~~~~~~~~~~l~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~  366 (399)
                      +...-|...-.-.-..++|.|++-+..++.+++..+..+|..+..+.+.
T Consensus       350 ll~~vP~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~~~  398 (415)
T PF12460_consen  350 LLKNVPKSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEAPE  398 (415)
T ss_pred             HHhhCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCHH
Confidence            9876553322222245789999999999999999999999999988864

MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].

>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]

Probab=95.83  E-value=0.19  Score=47.59  Aligned_cols=151  Identities=15%  Similarity=0.152  Sum_probs=107.9

Q ss_pred             hHHHHHHHHHHHHHHcCChhHHHHHHhCCChHHHHhcccCCCCcccccCCCcchHHHHHHHHHHHHHhcCChhhHHHHHh
Q 015851           76 DRAAAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIVD  155 (399)
Q Consensus        76 ~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~  155 (399)
                      +...+..|+..|..++.++.....++...++..|.+++.+.......        ++...++.++..+-...-..-..+.
T Consensus        96 ~~~~~~~a~k~l~sls~d~~fa~efi~~~gl~~L~~liedg~~~~~~--------~~L~~~L~af~elmehgvvsW~~~~  167 (713)
T KOG2999|consen   96 NNISKMEALKELDSLSLDPTFAEEFIRCSGLELLFSLIEDGRVCMSS--------ELLSTSLRAFSELMEHGVVSWESVS  167 (713)
T ss_pred             CcHHHHHHHHHHhhccccHHHHHHHHhcchHHHHHHHHHcCccchHH--------HHHHHHHHHHHHHHhhceeeeeecc
Confidence            44556679999999999999999999999999999999887652222        5666677777666521111111122


Q ss_pred             cCcHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhh
Q 015851          156 NGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLA  235 (399)
Q Consensus       156 ~~~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~  235 (399)
                      ..+|.....+.+....+.      .+...++..|-++...++.....+...--+..++..+...+..++..|...+..+.
T Consensus       168 ~~fV~~~a~~V~~~~~~a------~~~~~AL~~LE~~vl~s~~~~~~v~eev~i~~li~hlq~~n~~i~~~aial~nal~  241 (713)
T KOG2999|consen  168 NDFVVSMASYVNAKREDA------NTLLAALQMLESLVLGSDTLRQLVAEEVPIETLIRHLQVSNQRIQTCAIALLNALF  241 (713)
T ss_pred             cHHHHHHHHHHhhhhhcc------cchHHHHHHHHHHHhCChHHHHHHHhcCcHHHHHHHHHhcchHHHHHHHHHHHHHH
Confidence            234555555553322221      67788999999999877777777777888999999999999999998888888777


Q ss_pred             cCChh
Q 015851          236 FKNDE  240 (399)
Q Consensus       236 ~~~~~  240 (399)
                      ...++
T Consensus       242 ~~a~~  246 (713)
T KOG2999|consen  242 RKAPD  246 (713)
T ss_pred             hhCCh
Confidence            65444

>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]

Probab=95.53  E-value=0.21  Score=46.65  Aligned_cols=263  Identities=16%  Similarity=0.185  Sum_probs=137.7

Q ss_pred             hHHHHHHHHHHHHHHcCChh-HHHHHHhCCChHHHHhcccCCCCcccccCCCcchHHHHHHHHHHHHHhcC------Chh
Q 015851           76 DRAAAKRATHVLAELAKNEE-VVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAV------KPE  148 (399)
Q Consensus        76 ~~~~~~~a~~~L~~l~~~~~-~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~------~~~  148 (399)
                      ...+|.+++.+|.-++.+.. .+..+.+.  ...+..-+...            .|+++.++..++..+..      .|+
T Consensus       268 ps~~rle~~qvl~~~a~~~~~~~~~~~~l--~RvI~~~~~~~------------~p~~~l~~a~ll~~lg~~lv~~~~P~  333 (728)
T KOG4535|consen  268 PSPMRLEALQVLTLLARYFSMTQAYLMEL--GRVICKCMGEA------------DPSIQLHGAKLLEELGTGLIQQYKPD  333 (728)
T ss_pred             CchhHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHccCCCC------------ChHHHHHHHHHHHHHHHHHhhhcCCC
Confidence            34578899999998887633 22222221  12222223333            34788889888887752      233


Q ss_pred             hHHHHHhcCcHHHHHH------HHhccccCccccccHHHHHHHHHHHHHHhhcC----chhHHHHHhcCChHHHHHhhcC
Q 015851          149 HQQLIVDNGALSHLVN------LLKRHMDSNCSRAVNSVIRRAADAITNLAHEN----SSIKTRVRMEGGIPPLVELLEF  218 (399)
Q Consensus       149 ~~~~i~~~~~i~~L~~------~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~----~~~~~~~~~~~~i~~L~~ll~~  218 (399)
                      ..+.-...+.+-.++-      ..-+....       ......|.++.++....    ++.+.    ...+-.+..+-.+
T Consensus       334 ~~k~~~q~~~fw~~~l~~p~~~~~YDs~~~-------Tl~~s~Cdals~i~~~~f~~lpn~~~----T~~~~Fl~GC~d~  402 (728)
T KOG4535|consen  334 STKAPDQRAPFWTMMLNGPLPRALYDSEHP-------TLQASACDALSSILPEAFSNLPNDRQ----TLCITFLLGCNDS  402 (728)
T ss_pred             cccchhhhccHHHHHccCCChhhhhhhcCC-------CchhHHHHHHhhcCchhhcCCCCcch----hhhHHHHhcccch
Confidence            2222222221211111      11111111       56677788888877321    11111    0111122222234


Q ss_pred             CCHHHHHHHHHHHHHhhcCChhhHHH-HHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhc----CChh---HHHHHHHC
Q 015851          219 TDTKVQRAAAGALRTLAFKNDENKNQ-IVECNALPTLILMLRSEDSAIHYEAVGVIGNLVH----SSPN---IKKEVLAA  290 (399)
Q Consensus       219 ~~~~v~~~a~~~L~~L~~~~~~~~~~-~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~----~~~~---~~~~~~~~  290 (399)
                      ++.-++..|.+++..+.-+ +..+.. ..-......+...+.+..-..|..+.|+++||+.    +.+.   ....+. .
T Consensus       403 ~~~lv~~aA~Ra~~VyVLH-p~lr~d~~fv~~aa~~il~sl~d~~ln~r~KaawtlgnITdAL~~~~Ps~~s~~eR~s-g  480 (728)
T KOG4535|consen  403 KNRLVKAAASRALGVYVLH-PCLRQDVIFVADAANAILMSLEDKSLNVRAKAAWSLGNITDALIVNMPTPDSFQERFS-G  480 (728)
T ss_pred             HHHHHHHHHHhhceeEEec-cchhhhHHHHHHHHHHHHHHhhhHhHhHHHHHHHHhhhhHHHHHcCCCCchHHHHHHH-H
Confidence            4455778888888877774 333322 2223455556666667677899999999999973    1122   111221 1


Q ss_pred             CCcHHHHHhhc---CCChHHHHHHHHHHHHhhccCh---h-hHHHHHhcCCHHHHHHhh-CCCCHHHHHHHHHHHHHhhc
Q 015851          291 GALQPVIGLLS---SCCSESQREAALLLGQFAATDS---D-CKVHIVQRGAVRPLIEML-QSPDVQLREMSAFALGRLAQ  362 (399)
Q Consensus       291 ~~l~~L~~lL~---~~~~~v~~~a~~~L~~l~~~~~---~-~~~~l~~~g~v~~L~~ll-~~~~~~v~~~a~~~L~~l~~  362 (399)
                      -.+..++..-.   ..+.+++.++..+|+|+...-.   + ....+. .|.+..+.... ....-.|+=+|+.+++||-+
T Consensus       481 ~ll~~~~~~A~~~~Ad~dkV~~navraLgnllQvlq~i~~~~~~e~~-~~~~~~l~~~v~~~~~~kV~WNaCya~gNLfk  559 (728)
T KOG4535|consen  481 LLLLKMLRSAIEASADKDKVKSNAVRALGNLLQFLQPIEKPTFAEII-EESIQALISTVLTEAAMKVRWNACYAMGNLFK  559 (728)
T ss_pred             HHHHHHHHHHHHhhhhhhhhhhHHHHHHhhHHHHHHHhhhccHHHHH-HHHHHhcccceecccccccchHHHHHHHHhhc
Confidence            12333333322   2345889999999999874211   0 111222 22233333322 34577899999999999998


Q ss_pred             cCCC
Q 015851          363 VITV  366 (399)
Q Consensus       363 ~~~~  366 (399)
                      +..-
T Consensus       560 n~a~  563 (728)
T KOG4535|consen  560 NPAL  563 (728)
T ss_pred             Cccc
Confidence            8764

>KOG2032 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.46  E-value=1.2  Score=42.02  Aligned_cols=134  Identities=18%  Similarity=0.115  Sum_probs=79.3

Q ss_pred             HHHHHHHHHHHHhcCC-hhhHHHHHhcCcHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhhcCchhHHHHHhcCCh
Q 015851          131 EVEKGSAFALGLLAVK-PEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGI  209 (399)
Q Consensus       131 ~~~~~a~~~L~~l~~~-~~~~~~i~~~~~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i  209 (399)
                      .+|..|++.|++.+.. |+-... ...-.+..++.-|.+....       +++..++.+|..+...-.. .  -.....+
T Consensus       273 ~~r~~a~r~L~~~as~~P~kv~t-h~~~~ldaii~gL~D~~~~-------~V~leam~~Lt~v~~~~~~-~--~l~~~~l  341 (533)
T KOG2032|consen  273 KSRGMACRGLGNTASGAPDKVRT-HKTTQLDAIIRGLYDDLNE-------EVQLEAMKCLTMVLEKASN-D--DLESYLL  341 (533)
T ss_pred             HHHHHHHHHHHHHhccCcHHHHH-hHHHHHHHHHHHHhcCCcc-------HHHHHHHHHHHHHHHhhhh-c--chhhhch
Confidence            7899999999999954 432222 1222556666666665553       8888888888887742221 1  1122233


Q ss_pred             ---HHHHHhhcCCCHHHHHHHHHHHHHhhcCCh-hhHHHHHh--cCCHHHHHHhhcCCCHHHHHHHHHHHHHh
Q 015851          210 ---PPLVELLEFTDTKVQRAAAGALRTLAFKND-ENKNQIVE--CNALPTLILMLRSEDSAIHYEAVGVIGNL  276 (399)
Q Consensus       210 ---~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~-~~~~~~~~--~~~~~~L~~ll~~~~~~v~~~a~~~L~~l  276 (399)
                         -.+..+..+.+++.+..+...++.|+.... ..+..+.+  .+....++-.++++++.+.. ||+.....
T Consensus       342 ~ialrlR~l~~se~~~~R~aa~~Lfg~L~~l~g~~~e~~Fte~v~k~~~~lllhl~d~~p~va~-ACr~~~~~  413 (533)
T KOG2032|consen  342 NIALRLRTLFDSEDDKMRAAAFVLFGALAKLAGGGWEEFFTEQVKKRLAPLLLHLQDPNPYVAR-ACRSELRT  413 (533)
T ss_pred             hHHHHHHHHHHhcChhhhhhHHHHHHHHHHHcCCCchhhhHHHHHhccccceeeeCCCChHHHH-HHHHHHHh
Confidence               345667888999999999988888885322 22223332  22233455556666665544 44444333

>PRK14707 hypothetical protein; Provisional

Probab=95.39  E-value=5.6  Score=44.49  Aligned_cols=276  Identities=14%  Similarity=0.095  Sum_probs=146.7

Q ss_pred             hhhcchhhhHHHHHHHHHHHHHHcCChhHHHHHHhCCChHHHHhcccCCCCcccccCCCcchHHHHHHHHHHHHHhcCCh
Q 015851           68 TTFSWLEADRAAAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKP  147 (399)
Q Consensus        68 ~~l~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~  147 (399)
                      +.++.+-++..++..|...-..++.+++.+..+- .-++...+.-++.-...          +.++..+...=..+..++
T Consensus       338 NalsKWpd~~~C~~Aa~~LA~rl~~d~~l~~~l~-~q~~a~~lNalsKWp~~----------~~c~~aa~~LA~~l~~d~  406 (2710)
T PRK14707        338 NALSKWPDNPVCAAAVSALAERLVADPELRKDLE-PQGVSSVLNALSKWPDT----------PVCAAAASALAEHVVDDL  406 (2710)
T ss_pred             HHhhcCCCchhHHHHHHHHHHHhccCHhhhcccc-hhHHHHHHhhhhcCCCc----------hHHHHHHHHHHHHhccCh
Confidence            3344344555566666666666777888887664 34455556666654432          245544444445566888


Q ss_pred             hhHHHHHhcCcHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhhcCCCHHHHHHH
Q 015851          148 EHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAA  227 (399)
Q Consensus       148 ~~~~~i~~~~~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a  227 (399)
                      +.+..+-.. .+..+++-|.+=.+.       .+-..+...|.--..++...+..+-..++...|-.+-+-++..+-..+
T Consensus       407 ~l~~~~~~Q-~van~lnalsKWPd~-------~~C~~aa~~lA~~la~d~~l~~~~~p~~va~~LnalSKWPd~p~c~~a  478 (2710)
T PRK14707        407 ELRKGLDPQ-GVSNALNALAKWPDL-------PICGQAVSALAGRLAHDTELCKALDPINVTQALDALSKWPDTPICGQT  478 (2710)
T ss_pred             hhhhhcchh-hHHHHHHHhhcCCcc-------hhHHHHHHHHHHHHhccHHHHhhcChHHHHHHHHHhhcCCCChhHHHH
Confidence            888876655 466777777776665       455556665555444666655544333433444344455665555455


Q ss_pred             HHHHHHhhcCChhhHHHHHhcCCHHHHHHhhcCCCH-HHHHHHHHHHHHhhcCChhHHHHHHHCCCcHHHHHhhcCCChH
Q 015851          228 AGALRTLAFKNDENKNQIVECNALPTLILMLRSEDS-AIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSE  306 (399)
Q Consensus       228 ~~~L~~L~~~~~~~~~~~~~~~~~~~L~~ll~~~~~-~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~  306 (399)
                      +..|..=..+.++.++.+--.++...|-.+-+.++. .....+.|+.+.+... ......+...++...+-.+-+.++..
T Consensus       479 a~~La~~l~~~~~l~~a~~~q~~~~~L~aLSK~Pd~~~c~~A~~~lA~rl~~~-~~l~~~~~~~~~~~~lnalSKwp~s~  557 (2710)
T PRK14707        479 ASALAARLAHERRLRKALKPQEVVIALHSLSKWPDTPICAEAASALAERVVDE-LQLRKAFDAHQVVNTLKALSKWPDKQ  557 (2710)
T ss_pred             HHHHHHHhcccHHHHhhcCHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHhccc-hhhhhhhhhHHHHHHHHhhhcCCchh
Confidence            555544333355554444333333344444344543 4445555555666532 22222222222233333333456667


Q ss_pred             HHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHhhC-CCC-HHHHHHHHHHHHHhhccC
Q 015851          307 SQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQ-SPD-VQLREMSAFALGRLAQVI  364 (399)
Q Consensus       307 v~~~a~~~L~~l~~~~~~~~~~l~~~g~v~~L~~ll~-~~~-~~v~~~a~~~L~~l~~~~  364 (399)
                      ....++..|.......+..+..+-.. -|..+++.+. -++ ...+..+.+.-..+....
T Consensus       558 ~C~~A~~~iA~~l~~~~~~~~~L~aq-~Vs~llNaLSKWP~~~aC~~Aa~~LA~~l~~~~  616 (2710)
T PRK14707        558 LCAVAASGLAERLADEPQLPKDLHRQ-GVVIVLNALSKWPDTAVCAEAVNALAERLVDEP  616 (2710)
T ss_pred             HHHHHHHHHHHHhhcchhhHHhhhhh-HHHHHHHhhccCCCcHHHHHHHHHHHHHhccCh
Confidence            77777777777765444444444433 4556666664 344 444444445555555433

>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms

Probab=95.38  E-value=0.76  Score=44.62  Aligned_cols=119  Identities=18%  Similarity=0.233  Sum_probs=79.2

Q ss_pred             HHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhhHHHHHhcCCHHHHHHhhc
Q 015851          180 SVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLR  259 (399)
Q Consensus       180 ~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~L~~ll~  259 (399)
                      .....++..|.....+-|...+     .++..+++++.+++..||..|.+.|..+|.++++....+     ..+|+++|.
T Consensus        37 k~K~Laaq~I~kffk~FP~l~~-----~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~~~v~kv-----aDvL~QlL~  106 (556)
T PF05918_consen   37 KEKRLAAQFIPKFFKHFPDLQE-----EAINAQLDLCEDEDVQIRKQAIKGLPQLCKDNPEHVSKV-----ADVLVQLLQ  106 (556)
T ss_dssp             HHHHHHHHHHHHHHCC-GGGHH-----HHHHHHHHHHT-SSHHHHHHHHHHGGGG--T--T-HHHH-----HHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHhhChhhHH-----HHHHHHHHHHhcccHHHHHHHHHhHHHHHHhHHHHHhHH-----HHHHHHHHh
Confidence            7888899999999988887655     346779999999999999999999999998766665544     456999999


Q ss_pred             CCCHHHHHHHHHHHHHhhcCChhHHHHHHHCCCcHHHHHhhc---CCChHHHHHHHHHHH
Q 015851          260 SEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLS---SCCSESQREAALLLG  316 (399)
Q Consensus       260 ~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~---~~~~~v~~~a~~~L~  316 (399)
                      ++++.-...+-.+|..+...++..        .+..+...+.   +++..+|+.+...|.
T Consensus       107 tdd~~E~~~v~~sL~~ll~~d~k~--------tL~~lf~~i~~~~~~de~~Re~~lkFl~  158 (556)
T PF05918_consen  107 TDDPVELDAVKNSLMSLLKQDPKG--------TLTGLFSQIESSKSGDEQVRERALKFLR  158 (556)
T ss_dssp             ---HHHHHHHHHHHHHHHHH-HHH--------HHHHHHHHHH---HS-HHHHHHHHHHHH
T ss_pred             cccHHHHHHHHHHHHHHHhcCcHH--------HHHHHHHHHHhcccCchHHHHHHHHHHH
Confidence            988776666777777766544433        2344444443   456677888776664

Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.

>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D

Probab=95.37  E-value=0.74  Score=42.77  Aligned_cols=221  Identities=14%  Similarity=0.183  Sum_probs=117.9

Q ss_pred             HHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhhcCchhHHHHHhcCChH
Q 015851          131 EVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIP  210 (399)
Q Consensus       131 ~~~~~a~~~L~~l~~~~~~~~~i~~~~~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~  210 (399)
                      .+|+.++.-|+.-+.+++.+..+...|.++.+++.+.+..++       .+...+..++..+...+......+.......
T Consensus        37 s~Rr~sll~La~K~~~~~Fr~~~ra~g~~~~l~~~l~~~~~d-------~~~~l~~a~i~~~l~~d~~~~~l~~~~~~~~  109 (361)
T PF07814_consen   37 SVRRSSLLELASKCADPQFRRQFRAHGLVKRLFKALSDAPDD-------DILALATAAILYVLSRDGLNMHLLLDRDSLR  109 (361)
T ss_pred             cHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHHHHhccccch-------HHHHHHHHHHHHHHccCCcchhhhhchhHHH
Confidence            688899999999999999999999999999999999766653       2444444444444433333333333445556


Q ss_pred             HHHHhhcCCC-HHHHHHHHHHHHHhhcCChhhHHHHHhcCCHHHHHHhh------c---CCCHHHHHHHHHHHHHhh---
Q 015851          211 PLVELLEFTD-TKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILML------R---SEDSAIHYEAVGVIGNLV---  277 (399)
Q Consensus       211 ~L~~ll~~~~-~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~L~~ll------~---~~~~~v~~~a~~~L~~l~---  277 (399)
                      .++.++.... ..+.....      .. ...+.....+ ..+..+...+      .   .....-+..|+.++-.++   
T Consensus       110 ll~~Ll~~~~~~~~~~~~~------~~-~~~~lsk~~~-~~~~~~~~~~~~~~~~~~~~~~~lsp~~lall~le~l~~~~  181 (361)
T PF07814_consen  110 LLLKLLKVDKSLDVPSDSD------SS-RKKNLSKVQQ-KSRSLCKELLSSGSSWKSPKPPELSPQTLALLALESLVRSL  181 (361)
T ss_pred             HHHHHhccccccccccchh------hh-hhhhhhHHHH-HHHHHHHHHHhccccccccCCcccccccHHHHHHHHHHHHH
Confidence            6677766110 00000000      00 0000000000 0111111111      0   112234444555555552   


Q ss_pred             -----------cCChhHHHHHHHCCCcHHHHHhhcC----CC------------hHHHHHHHHHHHHhhccChhhHHHHH
Q 015851          278 -----------HSSPNIKKEVLAAGALQPVIGLLSS----CC------------SESQREAALLLGQFAATDSDCKVHIV  330 (399)
Q Consensus       278 -----------~~~~~~~~~~~~~~~l~~L~~lL~~----~~------------~~v~~~a~~~L~~l~~~~~~~~~~l~  330 (399)
                                 ...+..+..+...|+++.++..+..    .+            ...-..+..+|-+.+..+++++.++.
T Consensus       182 ~~~~~~~~t~~~~~~~fkeelr~lg~Ld~iv~~l~~~~~~~~~~~~~~~~~~~~l~~l~~cl~ILEs~T~~~~~nq~~l~  261 (361)
T PF07814_consen  182 REAGDLSETSSRAGEWFKEELRELGGLDHIVDILKDCHSSLSSADAWDDPSLQSLIDLERCLSILESVTFLSEENQSYLL  261 (361)
T ss_pred             hhcccchhhhhhccccchhhhhhHHHHHHHHHHHHHhhhhhhhhhhccccchHHHHHHHHHHHHHHHHHhcCccchHHHH
Confidence                       1112345666777889988888751    11            11334467788888876677776665


Q ss_pred             hc--CCHHHHHH-hhC---CCCHHHHHHHHHHHHHhhccCCC
Q 015851          331 QR--GAVRPLIE-MLQ---SPDVQLREMSAFALGRLAQVITV  366 (399)
Q Consensus       331 ~~--g~v~~L~~-ll~---~~~~~v~~~a~~~L~~l~~~~~~  366 (399)
                      ..  +.++.+.. ++.   .........++..+.|++.+.+.
T Consensus       262 ~~~~~~l~~~~~~l~~~~~~~~~~~l~~~lrlllNlTn~n~~  303 (361)
T PF07814_consen  262 SHRSSLLPQLLSTLLRQCDDQVIQLLLLALRLLLNLTNNNPS  303 (361)
T ss_pred             HhcccchHHHHHHHHHHHHHHHHHHHHHHHHHeeeCCCCCcc
Confidence            52  23332222 222   23344456778888888887764

melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants.

>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms

Probab=95.35  E-value=0.42  Score=46.32  Aligned_cols=137  Identities=16%  Similarity=0.156  Sum_probs=85.8

Q ss_pred             HHHhhcCCCHHHHHHHHHHHHHhhcCChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHHCC
Q 015851          212 LVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAG  291 (399)
Q Consensus       212 L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~  291 (399)
                      ++...+ ++...+..|+..|.....+.|+.....     +..++.++.+++..||..|+..|..+|..+++....+    
T Consensus        28 il~~~k-g~~k~K~Laaq~I~kffk~FP~l~~~A-----i~a~~DLcEDed~~iR~~aik~lp~~ck~~~~~v~kv----   97 (556)
T PF05918_consen   28 ILDGVK-GSPKEKRLAAQFIPKFFKHFPDLQEEA-----INAQLDLCEDEDVQIRKQAIKGLPQLCKDNPEHVSKV----   97 (556)
T ss_dssp             HHHGGG-S-HHHHHHHHHHHHHHHCC-GGGHHHH-----HHHHHHHHT-SSHHHHHHHHHHGGGG--T--T-HHHH----
T ss_pred             HHHHcc-CCHHHHHHHHHHHHHHHhhChhhHHHH-----HHHHHHHHhcccHHHHHHHHHhHHHHHHhHHHHHhHH----
Confidence            444444 578899999999999988888876654     5569999999999999999999999998766665544    


Q ss_pred             CcHHHHHhhcCCChHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHhh---CCCCHHHHHHHHHHHHHhhccCCCC
Q 015851          292 ALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEML---QSPDVQLREMSAFALGRLAQVITVS  367 (399)
Q Consensus       292 ~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~v~~L~~ll---~~~~~~v~~~a~~~L~~l~~~~~~~  367 (399)
                       .+.|.++|++.++.....+-.+|..+...++..        .+..+..-+   .+++..+|+.+...|..=...-+..
T Consensus        98 -aDvL~QlL~tdd~~E~~~v~~sL~~ll~~d~k~--------tL~~lf~~i~~~~~~de~~Re~~lkFl~~kl~~l~~~  167 (556)
T PF05918_consen   98 -ADVLVQLLQTDDPVELDAVKNSLMSLLKQDPKG--------TLTGLFSQIESSKSGDEQVRERALKFLREKLKPLKPE  167 (556)
T ss_dssp             -HHHHHHHTT---HHHHHHHHHHHHHHHHH-HHH--------HHHHHHHHHH---HS-HHHHHHHHHHHHHHGGGS-TT
T ss_pred             -HHHHHHHHhcccHHHHHHHHHHHHHHHhcCcHH--------HHHHHHHHHHhcccCchHHHHHHHHHHHHHHhhCcHH
Confidence             678999999888766666666666665443322        122222222   2467778888888776555544443

Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.

>KOG2956 consensus CLIP-associating protein [General function prediction only]

Probab=95.26  E-value=1.6  Score=40.91  Aligned_cols=147  Identities=16%  Similarity=0.125  Sum_probs=92.8

Q ss_pred             cHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHH-HHHhhc
Q 015851          158 ALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGA-LRTLAF  236 (399)
Q Consensus       158 ~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~-L~~L~~  236 (399)
                      ++..+++.|.+..++       ..+..++++|..++...+. +-.=...-++..+++.-.+...++...|... +..+++
T Consensus       330 iL~~l~EvL~d~~~~-------~~k~laLrvL~~ml~~Q~~-~l~DstE~ai~K~Leaa~ds~~~v~~~Aeed~~~~las  401 (516)
T KOG2956|consen  330 ILLLLLEVLSDSEDE-------IIKKLALRVLREMLTNQPA-RLFDSTEIAICKVLEAAKDSQDEVMRVAEEDCLTTLAS  401 (516)
T ss_pred             HHHHHHHHHccchhh-------HHHHHHHHHHHHHHHhchH-hhhchHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHh
Confidence            567778888775443       7788899999999954432 2111112345556666666666665555554 555555


Q ss_pred             CChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHHCCCcHHHHHhhcCCChHHHHHHHHHHH
Q 015851          237 KNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLG  316 (399)
Q Consensus       237 ~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~  316 (399)
                      +.|..+        +..+..++...|......++..+..++..-+.---..+-.++.|.+++.-.+.+..+|+.|++||.
T Consensus       402 ~~P~~~--------I~~i~~~Ilt~D~~~~~~~iKm~Tkl~e~l~~EeL~~ll~diaP~~iqay~S~SS~VRKtaVfCLV  473 (516)
T KOG2956|consen  402 HLPLQC--------IVNISPLILTADEPRAVAVIKMLTKLFERLSAEELLNLLPDIAPCVIQAYDSTSSTVRKTAVFCLV  473 (516)
T ss_pred             hCchhH--------HHHHhhHHhcCcchHHHHHHHHHHHHHhhcCHHHHHHhhhhhhhHHHHHhcCchHHhhhhHHHhHH
Confidence            444332        333444444456666666777777777433222122234678899999999999999999999998


Q ss_pred             Hhhc
Q 015851          317 QFAA  320 (399)
Q Consensus       317 ~l~~  320 (399)
                      .+..
T Consensus       474 amv~  477 (516)
T KOG2956|consen  474 AMVN  477 (516)
T ss_pred             HHHH
Confidence            8863

>KOG2032 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.20  E-value=0.17  Score=47.34  Aligned_cols=142  Identities=15%  Similarity=0.157  Sum_probs=89.3

Q ss_pred             hcCCCHHHHHHHHHHHHHhhcCChhhHHHHHhcCCHHHHH-HhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHHC---C
Q 015851          216 LEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLI-LMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAA---G  291 (399)
Q Consensus       216 l~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~L~-~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~---~  291 (399)
                      ..+++..++..|++.|+|.+++.|+........ .+..++ .+.+..+.+|.-.+..+|..+...-.   ..-+..   +
T Consensus       267 a~dp~a~~r~~a~r~L~~~as~~P~kv~th~~~-~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~~---~~~l~~~~l~  342 (533)
T KOG2032|consen  267 ATDPSAKSRGMACRGLGNTASGAPDKVRTHKTT-QLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKAS---NDDLESYLLN  342 (533)
T ss_pred             ccCchhHHHHHHHHHHHHHhccCcHHHHHhHHH-HHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhh---hcchhhhchh
Confidence            355678999999999999999756554444443 344444 44455678999999999988763211   111122   2


Q ss_pred             CcHHHHHhhcCCChHHHHHHHHHHHHhhccC-hhhHHHHHh--cCCHHHHHHhhCCCCHHHHHHHHHHHHHhh
Q 015851          292 ALQPVIGLLSSCCSESQREAALLLGQFAATD-SDCKVHIVQ--RGAVRPLIEMLQSPDVQLREMSAFALGRLA  361 (399)
Q Consensus       292 ~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~-~~~~~~l~~--~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~  361 (399)
                      +.-.+..+..+.+++++..|....+.++... ...+..+.+  .+....|+-.+.++++.+..++-..+..+.
T Consensus       343 ialrlR~l~~se~~~~R~aa~~Lfg~L~~l~g~~~e~~Fte~v~k~~~~lllhl~d~~p~va~ACr~~~~~c~  415 (533)
T KOG2032|consen  343 IALRLRTLFDSEDDKMRAAAFVLFGALAKLAGGGWEEFFTEQVKKRLAPLLLHLQDPNPYVARACRSELRTCY  415 (533)
T ss_pred             HHHHHHHHHHhcChhhhhhHHHHHHHHHHHcCCCchhhhHHHHHhccccceeeeCCCChHHHHHHHHHHHhcC
Confidence            3345566677888899999887777666432 234444443  223345555667788887766665555444

>PF10363 DUF2435: Protein of unknown function (DUF2435)

Probab=95.14  E-value=0.075  Score=38.34  Aligned_cols=83  Identities=19%  Similarity=0.141  Sum_probs=67.4

Q ss_pred             cHHHHHhhcCCChHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhccCCCCcchhH
Q 015851          293 LQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQVITVSVLPAI  372 (399)
Q Consensus       293 l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~  372 (399)
                      ++..+..+.++.+.+|.++...|..+.....  .......+++..+...++++++-|=-+|+.+|..++...++.+++.+
T Consensus         5 ~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~--~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p~~vl~~L   82 (92)
T PF10363_consen    5 LQEALSDLNDPLPPVRAHGLVLLRKLIESKS--EPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHPDEVLPIL   82 (92)
T ss_pred             HHHHHHHccCCCcchHHHHHHHHHHHHHcCC--cchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHChHHHHHHH
Confidence            4556677888888999999999999986533  23333456788889999999999999999999999999998888887


Q ss_pred             HHHHh
Q 015851          373 LIFII  377 (399)
Q Consensus       373 ~~~~~  377 (399)
                      +....
T Consensus        83 ~~~y~   87 (92)
T PF10363_consen   83 LDEYA   87 (92)
T ss_pred             HHHHh
Confidence            76654

>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length

Probab=95.12  E-value=2  Score=37.24  Aligned_cols=199  Identities=19%  Similarity=0.096  Sum_probs=112.4

Q ss_pred             hhhhHHHHHHHHHHHHHHcCCh-hHHHHHHhCCChHHHHhcccCCCCcccccCCCcchHHHHHHHHHHHHHhc-CChhhH
Q 015851           73 LEADRAAAKRATHVLAELAKNE-EVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA-VKPEHQ  150 (399)
Q Consensus        73 ~~~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~~~~~a~~~L~~l~-~~~~~~  150 (399)
                      +..++..+...+..|..++.+. .+...+     +..+..+.+.+..            +.+.-+.+.+..+- .++..-
T Consensus        11 ~~~~~~~~~~~L~~L~~l~~~~~~~~~~v-----~~~L~~L~~~~~~------------~~~~~~~rLl~~lw~~~~r~f   73 (234)
T PF12530_consen   11 KISDPELQLPLLEALPSLACHKNVCVPPV-----LQTLVSLVEQGSL------------ELRYVALRLLTLLWKANDRHF   73 (234)
T ss_pred             CCCChHHHHHHHHHHHHHhccCccchhHH-----HHHHHHHHcCCch------------hHHHHHHHHHHHHHHhCchHH
Confidence            4567788899999999999876 443333     5556665555444            33445556666665 332221


Q ss_pred             HHHHhcCcHHHHHHHHhcc--ccCccccccHHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhh-cCCCHHHHHHH
Q 015851          151 QLIVDNGALSHLVNLLKRH--MDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELL-EFTDTKVQRAA  227 (399)
Q Consensus       151 ~~i~~~~~i~~L~~~L~~~--~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll-~~~~~~v~~~a  227 (399)
                            +.+..++..+...  .........++........+..+|...++     .....++.+..++ ++.++.++..+
T Consensus        74 ------~~L~~~L~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~-----~g~~ll~~ls~~L~~~~~~~~~ala  142 (234)
T PF12530_consen   74 ------PFLQPLLLLLILRIPSSFSSKDEFWECLISIAASIRDICCSRPD-----HGVDLLPLLSGCLNQSCDEVAQALA  142 (234)
T ss_pred             ------HHHHHHHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHhChh-----hHHHHHHHHHHHHhccccHHHHHHH
Confidence                  2344444431111  00000111225556666788888877765     3345677888888 78889999999


Q ss_pred             HHHHHHhhcCChhhHHHHHh-cCCHHHHHHhhcC-CCHHHHHHHHHHHHHhhcCC-hhHHHHHHHCCCcHHHHHhhcCCC
Q 015851          228 AGALRTLAFKNDENKNQIVE-CNALPTLILMLRS-EDSAIHYEAVGVIGNLVHSS-PNIKKEVLAAGALQPVIGLLSSCC  304 (399)
Q Consensus       228 ~~~L~~L~~~~~~~~~~~~~-~~~~~~L~~ll~~-~~~~v~~~a~~~L~~l~~~~-~~~~~~~~~~~~l~~L~~lL~~~~  304 (399)
                      +.+|..++..      .+++ ......+.+-++. ..+.+....+..+..+.... +..........++..+.++..+.+
T Consensus       143 le~l~~Lc~~------~vvd~~s~w~vl~~~l~~~~rp~v~~~l~~l~~l~~~~~~~~e~~~~~~~~~l~~lW~~~~~~~  216 (234)
T PF12530_consen  143 LEALAPLCEA------EVVDFYSAWKVLQKKLSLDYRPLVLKSLCSLFALVPQGAVDSEEYEELKRQILQLLWEYTSSSD  216 (234)
T ss_pred             HHHHHHHHHH------hhccHHHHHHHHHHhcCCccchHHHHHHHHHHHHhccccCChhhhhHHHHHHHHHHHhhccccc
Confidence            9999999942      2222 2234555555543 35566665555555544321 112233344455666666665544


Q ss_pred             h
Q 015851          305 S  305 (399)
Q Consensus       305 ~  305 (399)
                      .
T Consensus       217 ~  217 (234)
T PF12530_consen  217 V  217 (234)
T ss_pred             c
Confidence            3

>PRK14707 hypothetical protein; Provisional

Probab=95.10  E-value=2.4  Score=47.08  Aligned_cols=279  Identities=17%  Similarity=0.189  Sum_probs=155.1

Q ss_pred             hhHHHHhhhhhcchhhhHHHHHHHHHHHHHHcCChhHHHHHHhCCChHHHHhcccCCCCcccccCCCcchHHHHHHHHHH
Q 015851           60 SAQVNVLNTTFSWLEADRAAAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFA  139 (399)
Q Consensus        60 ~~~~~~L~~~l~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~~~~~a~~~  139 (399)
                      ..-+..+.+.++.+.++..++..+...-..++.++..+..+ +.-+|..++.-++.-..          +++++..+...
T Consensus       162 ~~~~~lllNafSKw~~~~~c~~aa~~la~~~~~~d~~~~~~-~~q~ia~~lNa~sKWp~----------~~~c~~aa~~l  230 (2710)
T PRK14707        162 AQNISLALNAFSKWSDNPDCQAVAPRFAALVASDDRLRSAM-DAQGVATVLNALCKWPD----------TPDCGNAVSAL  230 (2710)
T ss_pred             cccHHHHHHHhhcCCCCchHHHHHHHHHHHhcCChhhhccc-chHHHHHHHHHHhcCCC----------ChhHHHHHHHH
Confidence            33455555556555566777777777777777777666555 44456666666665444          23566544444


Q ss_pred             HHHhcCChhhHHHHHhcCcHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhhcCC
Q 015851          140 LGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFT  219 (399)
Q Consensus       140 L~~l~~~~~~~~~i~~~~~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~  219 (399)
                      -..++.....+..+ +...+-..++.|.+-.+.       ..-..+...|..=...++..+..+-..++-..|=.+-+.+
T Consensus       231 a~~l~~~~~l~~~~-~~q~va~~lN~lsKwp~~-------~~C~~a~~~lA~rl~~~~~l~~al~~q~vanalNalSKwp  302 (2710)
T PRK14707        231 AERLADESRLRNEL-KPQELGNALNALSKWADT-------PVCAAAASALAERLVDDPGLRKALDPINVTQALNALSKWA  302 (2710)
T ss_pred             HHHHcCcHHHHHhC-ChHHHHHHHHHHhcCCCc-------hHHHHHHHHHHHHHhhhHHHHHhcCHHHHHHHHhhhhcCC
Confidence            45556665554443 334566777777776654       3334444443332224444444333223333333444556


Q ss_pred             CHHHHHHHHHHHHHhhcCChhhHHHHHhcCCHHHHHHhhc-CCCHHHHHHHHHHHHHhhcCChhHHHHHHHCCCcHHHHH
Q 015851          220 DTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLR-SEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIG  298 (399)
Q Consensus       220 ~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~L~~ll~-~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~  298 (399)
                      +..+-..|+..|..=..+.++....+ +...+...++.|+ -++..+-..|+.+|..-...++..++.+- ..++..+++
T Consensus       303 d~~vc~~Aa~~la~rl~~d~~l~~~~-~~~~~~~~LNalsKWpd~~~C~~Aa~~LA~rl~~d~~l~~~l~-~q~~a~~lN  380 (2710)
T PRK14707        303 DLPVCAEAAIALAERLADDPELCKAL-NARGLSTALNALSKWPDNPVCAAAVSALAERLVADPELRKDLE-PQGVSSVLN  380 (2710)
T ss_pred             CchHHHHHHHHHHHHHhccHhhhhcc-chHHHHHHHHHhhcCCCchhHHHHHHHHHHHhccCHhhhcccc-hhHHHHHHh
Confidence            76555555555544443345444333 3333444454444 45555555555555443334455555443 334444554


Q ss_pred             hh-cCCChHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHH
Q 015851          299 LL-SSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGR  359 (399)
Q Consensus       299 lL-~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~  359 (399)
                      .+ +-++..+...|+..|..-...+++.++.+-..|+-..|-.+.+=++..+...++.+|.-
T Consensus       381 alsKWp~~~~c~~aa~~LA~~l~~d~~l~~~~~~Q~van~lnalsKWPd~~~C~~aa~~lA~  442 (2710)
T PRK14707        381 ALSKWPDTPVCAAAASALAEHVVDDLELRKGLDPQGVSNALNALAKWPDLPICGQAVSALAG  442 (2710)
T ss_pred             hhhcCCCchHHHHHHHHHHHHhccChhhhhhcchhhHHHHHHHhhcCCcchhHHHHHHHHHH
Confidence            44 46777888888888887666677887777777666666555565676666666665553

>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane

Probab=95.09  E-value=2.9  Score=38.94  Aligned_cols=266  Identities=18%  Similarity=0.146  Sum_probs=130.7

Q ss_pred             HHHHHHHHHHHcC-C-hhHHHHHHhCCChHHHHhcccCCCCcccc--cCCCcchHHHHHHHHHHHHHhc-CChhhHHHHH
Q 015851           80 AKRATHVLAELAK-N-EEVVNWIVEGGAVPALVKHLQAPPTSEAD--RNLKPFEHEVEKGSAFALGLLA-VKPEHQQLIV  154 (399)
Q Consensus        80 ~~~a~~~L~~l~~-~-~~~~~~~~~~g~l~~L~~lL~~~~~~~~~--~~~~~~~~~~~~~a~~~L~~l~-~~~~~~~~i~  154 (399)
                      ....+.++..+.. | |+....-. ...+..+..+|.-+.+....  +.....-..++..++..+...+ ...+.-..++
T Consensus        57 l~lilKiF~sL~~~DLPe~fed~l-~~wm~~f~~~L~~~~p~l~~~d~~e~~~l~kvK~~i~~~~~ly~~kY~e~f~~~l  135 (370)
T PF08506_consen   57 LKLILKIFYSLNCQDLPEFFEDNL-SEWMEIFHKYLTYPNPALEEDDDDEPGLLEKVKAWICENLNLYAEKYEEEFEPFL  135 (370)
T ss_dssp             HHHHHHHHHHHHSSS--HHHHHTH-HHHHHHHHHHHH--SGGG-TT-SSS--HHHHHHHHHHHHHHHHHHH-HHHHHHHH
T ss_pred             HHHHHHHHHHHccCcCcHHHHHHH-HHHHHHHHHHHcCCCcccCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3345566666665 5 65433211 13344455555544332221  1112223467777777777766 3333222222


Q ss_pred             hcCcHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhhcCchhH---------HHHHhcCChHHHH------Hhh---
Q 015851          155 DNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIK---------TRVRMEGGIPPLV------ELL---  216 (399)
Q Consensus       155 ~~~~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~---------~~~~~~~~i~~L~------~ll---  216 (399)
                       ..++..+.++|.+-......+   .+...++..|..++. .+..+         ..+...-++|.+.      ++.   
T Consensus       136 -~~fv~~vw~lL~~~~~~~~~D---~lv~~al~FL~~v~~-~~~~~~lf~~~~~L~~Iie~VI~Pnl~~~e~D~ElfEdd  210 (370)
T PF08506_consen  136 -PTFVQAVWNLLTKISQQPKYD---ILVSKALQFLSSVAE-SPHHKNLFENKPHLQQIIEKVIFPNLCLREEDEELFEDD  210 (370)
T ss_dssp             -HHHHHHHHHHHTC--SSGGGH---HHHHHHHHHHHHHHT-SHHHHTTT-SHHHHHHHHHHTHHHHHS--HHHHHHHHHS
T ss_pred             -HHHHHHHHHHHHHhhhccccc---HHHHHHHHHHHHHHc-chhHHHHhCCHHHHHHHHHHhccCccCCCHHHHHHHccC
Confidence             235666666665533322111   566667777777663 22222         1122222222221      111   


Q ss_pred             ---------cC-CCHHHHHHHHHHHHHhhcCChhhHHHHHhcCCHHHHHH-hhc--CCCHHHHHHHHHHHHHhhcCChh-
Q 015851          217 ---------EF-TDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLIL-MLR--SEDSAIHYEAVGVIGNLVHSSPN-  282 (399)
Q Consensus       217 ---------~~-~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~L~~-ll~--~~~~~v~~~a~~~L~~l~~~~~~-  282 (399)
                               .. +...-|.+|+..+..|+...+.....++. +.+..++. .-.  ..+..-+..|+..++.++..... 
T Consensus       211 P~EYIrrd~e~sd~~TrR~AA~dfl~~L~~~~~~~v~~i~~-~~i~~~l~~y~~~~~~~w~~KD~Al~Li~ala~k~~t~  289 (370)
T PF08506_consen  211 PEEYIRRDLEGSDSDTRRRAACDFLRSLCKKFEKQVTSILM-QYIQQLLQQYASNPSNNWRSKDGALYLIGALASKGSTT  289 (370)
T ss_dssp             HHHHHHHHSCSS---SHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH-TTT-HHHHHHHHHHHHHHHBSS--B
T ss_pred             HHHHHHhhccccccCCcHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHHhhCCcccHHHHHHHHHHHHHHHhhhccc
Confidence                     11 12446788899999998633322222221 12222222 111  24567788899999999854321 


Q ss_pred             -----------HHHHHHHCCCcHHHHHhhcCCChHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHhhCCCCHHHHH
Q 015851          283 -----------IKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLRE  351 (399)
Q Consensus       283 -----------~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~v~~L~~ll~~~~~~v~~  351 (399)
                                 ....+....++|.|. -=.+..+-++..|++.+..+-..  -....+..  ++|.++.+|.+++.-|..
T Consensus       290 ~~Gvt~~~~~v~v~~Ff~~~v~peL~-~~~~~~piLka~aik~~~~Fr~~--l~~~~l~~--~~~~l~~~L~~~~~vv~t  364 (370)
T PF08506_consen  290 KSGVTQTNELVDVVDFFSQHVLPELQ-PDVNSHPILKADAIKFLYTFRNQ--LPKEQLLQ--IFPLLVNHLQSSSYVVHT  364 (370)
T ss_dssp             TTB-S-B-TTS-HHHHHHHHTCHHHH--SS-S-HHHHHHHHHHHHHHGGG--S-HHHHHH--HHHHHHHHTTSS-HHHHH
T ss_pred             cCCcccccccccHHHHHHHHhHHHhc-ccCCCCcchHHHHHHHHHHHHhh--CCHHHHHH--HHHHHHHHhCCCCcchhh
Confidence                       123444445555554 11145567888899999988643  23333433  699999999999998988


Q ss_pred             HHHHHH
Q 015851          352 MSAFAL  357 (399)
Q Consensus       352 ~a~~~L  357 (399)
                      -|+.++
T Consensus       365 yAA~~i  370 (370)
T PF08506_consen  365 YAAIAI  370 (370)
T ss_dssp             HHHHHH
T ss_pred             hhhhhC
Confidence            887764

Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=95.08  E-value=0.64  Score=47.00  Aligned_cols=193  Identities=17%  Similarity=0.156  Sum_probs=118.4

Q ss_pred             HHHHhc-CChhhHHHHHhcCcHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhhcCchhHHHHHhcCCh--HHHHHh
Q 015851          139 ALGLLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGI--PPLVEL  215 (399)
Q Consensus       139 ~L~~l~-~~~~~~~~i~~~~~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i--~~L~~l  215 (399)
                      +|++++ .+++....+.+.|++..+...++.....       +++..+++.+.+++...+. +........+  ..+-.+
T Consensus       494 ~l~~~t~~~~~~C~~~l~~~g~~~~~~~l~~f~~~-------~~~~~il~~l~n~~~~~~~-~~~~~~~~~~~~~~f~~~  565 (699)
T KOG3665|consen  494 ALWNITDENPETCKEFLDNGGMKLLFKCLESFDNE-------ELHRKILGLLGNLAEVLEL-RELLMIFEFIDFSVFKVL  565 (699)
T ss_pred             HHHhhhcCCHHHHHHHHhcccHHHHHHHHhhccch-------hHHHHHHHHHHHHHHHhhh-hhhhhHHHHHHHHHHHHH
Confidence            777888 8899999999999999999999987444       8999999999999964322 1111111111  223334


Q ss_pred             hcCCC-HHHHHHHHHHHHHhhcCChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHHCCCcH
Q 015851          216 LEFTD-TKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQ  294 (399)
Q Consensus       216 l~~~~-~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~  294 (399)
                      +..-+ .+.-..+++.|+.+....++    ....+.           -+.+...-..++......   ........-+.+
T Consensus       566 ~~~w~~~ersY~~~siLa~ll~~~~~----~~~~~~-----------r~~~~~~l~e~i~~~~~~---~~~~~~~~~f~~  627 (699)
T KOG3665|consen  566 LNKWDSIERSYNAASILALLLSDSEK----TTECVF-----------RNSVNELLVEAISRWLTS---EIRVINDRSFFP  627 (699)
T ss_pred             HhhcchhhHHHHHHHHHHHHHhCCCc----Cccccc-----------hHHHHHHHHHHhhccCcc---ceeehhhhhcch
Confidence            44433 47888888888888874333    111111           112222223333333211   111122222222


Q ss_pred             HHHHhhc-CCChHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHhhCC-CCHHHHHHHHHHH
Q 015851          295 PVIGLLS-SCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQS-PDVQLREMSAFAL  357 (399)
Q Consensus       295 ~L~~lL~-~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~v~~L~~ll~~-~~~~v~~~a~~~L  357 (399)
                      .+..++. +..+..+.+|.|++.+++..+++..+.+.+.|+++.+.+.-.. ....+...+...+
T Consensus       628 ~~~~il~~s~~~g~~lWal~ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  692 (699)
T KOG3665|consen  628 RILRILRLSKSDGSQLWALWTIKNVLEQNKEYCKLVRESNGFELIENIRVLSEVVDVKEEAVLVI  692 (699)
T ss_pred             hHHHHhcccCCCchHHHHHHHHHHHHHcChhhhhhhHhccchhhhhhcchhHHHHHHHHHHHHHh
Confidence            2555554 4566889999999999999888888888999999888887643 2334444444433

>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]

Probab=95.07  E-value=0.16  Score=42.40  Aligned_cols=142  Identities=13%  Similarity=0.116  Sum_probs=100.4

Q ss_pred             HHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhhcCc-hhHHHHHhcCChHH
Q 015851          133 EKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENS-SIKTRVRMEGGIPP  211 (399)
Q Consensus       133 ~~~a~~~L~~l~~~~~~~~~i~~~~~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~-~~~~~~~~~~~i~~  211 (399)
                      ...|+..|.-++..|+.+..+.++.+--.+..+|...+.+...+   -++..++++++.|...+. .+-..+....++|.
T Consensus       117 vcnaL~lLQclaShPetk~~Fl~AhiplflypfLntss~~~~fE---yLRltsLGVIgaLvkNdsq~vi~fLltTeivPL  193 (315)
T COG5209         117 VCNALNLLQCLASHPETKKVFLDAHIPLFLYPFLNTSSSNSKFE---YLRLTSLGVIGALVKNDSQYVIKFLLTTEIVPL  193 (315)
T ss_pred             HHHHHHHHHHHhcCcchheeeeecccceeeHhhhhccccCCccc---eeeehHHHHHHHHHhCCCHHHHHHHHhhhHHHH
Confidence            35677777778899999999999876666666666554443332   567789999999997544 44555667799999


Q ss_pred             HHHhhcCCCHHHHHHHHHHHHHhhcCChhhHHHHHhc--------CCHHHHH-HhhcCCCHHHHHHHHHHHHHhhc
Q 015851          212 LVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVEC--------NALPTLI-LMLRSEDSAIHYEAVGVIGNLVH  278 (399)
Q Consensus       212 L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~--------~~~~~L~-~ll~~~~~~v~~~a~~~L~~l~~  278 (399)
                      +++++..+++--+..|+..+..+.- ++.+-+.+++.        ..+..++ ++.+.+...+...++++--.++.
T Consensus       194 cLrIme~gSElSktvaifI~qkil~-dDvGLqYiCqT~eRFyAv~~vln~mv~qlVs~~~~RLlKh~iRcYlRLsd  268 (315)
T COG5209         194 CLRIMELGSELSKTVAIFIFQKILG-DDVGLQYICQTFERFYAVNLVLNSMVSQLVSLGSTRLLKHAIRCYLRLSD  268 (315)
T ss_pred             HHHHHHhhhHHHHHHHHHHHHHHhc-cchhHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHheeecC
Confidence            9999999998888889888888875 56666555542        1112222 23334566777888888887764

>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5

Probab=95.06  E-value=0.2  Score=34.29  Aligned_cols=67  Identities=13%  Similarity=0.146  Sum_probs=53.8

Q ss_pred             HHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhhcCchhHHHHHhcC
Q 015851          133 EKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEG  207 (399)
Q Consensus       133 ~~~a~~~L~~l~~~~~~~~~i~~~~~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~  207 (399)
                      .+.|+|++++++..+.....+.+.+.++.++++....+.-       .++-.+..+|.-++. .....+.+.+.|
T Consensus         4 lKaaLWaighIgss~~G~~lL~~~~iv~~iv~~a~~s~v~-------siRGT~fy~Lglis~-T~~G~~~L~~~g   70 (73)
T PF14668_consen    4 LKAALWAIGHIGSSPLGIQLLDESDIVEDIVKIAENSPVL-------SIRGTCFYVLGLISS-TEEGAEILDELG   70 (73)
T ss_pred             HHHHHHHHHhHhcChHHHHHHhhcCHHHHHHHHHHhCCcc-------chHHHHHHHHHHHhC-CHHHHHHHHHcC
Confidence            3589999999999888888888889999999999887664       788889999999884 555555454444

>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4

Probab=95.05  E-value=2.7  Score=43.01  Aligned_cols=180  Identities=13%  Similarity=0.175  Sum_probs=112.2

Q ss_pred             HHhcCcHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhhc----CCC----HHHH
Q 015851          153 IVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLE----FTD----TKVQ  224 (399)
Q Consensus       153 i~~~~~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~----~~~----~~v~  224 (399)
                      +.+.|++..++.++....+....+   ++....+..|..++ .-+.++..+...++++.|+..+.    .+.    +.+-
T Consensus       113 ~~~~gGL~~ll~~l~~~~~~~~~~---~ll~~llkLL~~c~-Kv~~NR~~Ll~~~al~~LL~~L~~~l~~~~~~~~~~i~  188 (802)
T PF13764_consen  113 LAECGGLEVLLSRLDSIRDFSRGR---ELLQVLLKLLRYCC-KVKVNRRALLELNALNRLLSVLNRALQANQNSSQAEIA  188 (802)
T ss_pred             hhcCCCHHHHHHHHHhhccccCcH---HHHHHHHHHHHHHH-hhHHHHHHHHHcCCHHHHHHHHHHHHhCccccccchHH
Confidence            446889999999998765432222   67777888888888 45777888888999999888763    433    6777


Q ss_pred             HHHHHHHHHhhcCChhhHHHH------HhcC--------CHHHHHHhhcC----CCHHHHHHHHHHHHHhhcCChhHHHH
Q 015851          225 RAAAGALRTLAFKNDENKNQI------VECN--------ALPTLILMLRS----EDSAIHYEAVGVIGNLVHSSPNIKKE  286 (399)
Q Consensus       225 ~~a~~~L~~L~~~~~~~~~~~------~~~~--------~~~~L~~ll~~----~~~~v~~~a~~~L~~l~~~~~~~~~~  286 (399)
                      +..+.++-.|...  .....+      ....        -+..|+..+.+    .++.+....+++|.+|+.++++....
T Consensus       189 E~LL~IiE~ll~e--a~~~~~~~~~~~~~~~~~~~~~~~~v~~lL~~l~s~~~r~~~~i~~~l~RiLP~Lt~G~~e~m~~  266 (802)
T PF13764_consen  189 EQLLEIIESLLSE--ANSSSSSESKSSSSLSGSEEQDKEQVEMLLERLNSPFVRSNPQILQALARILPFLTYGNEEKMDA  266 (802)
T ss_pred             HHHHHHHHHHHHH--HhhhhhhhccccccccccccccHHHHHHHHHHhcCccccCCHHHHHHHHHHhhHHhcCCHHHHHH
Confidence            7777777777652  111111      1111        25666666664    36889999999999999887776555


Q ss_pred             HHHCCCcHHHHHh--hc---CCChHHHHHHHHHHHHhhcc---C---hhhHHHHHhcCCHHHHHHhhC
Q 015851          287 VLAAGALQPVIGL--LS---SCCSESQREAALLLGQFAAT---D---SDCKVHIVQRGAVRPLIEMLQ  343 (399)
Q Consensus       287 ~~~~~~l~~L~~l--L~---~~~~~v~~~a~~~L~~l~~~---~---~~~~~~l~~~g~v~~L~~ll~  343 (399)
                      ++++  +.+.+++  +.   +++..+.   +.+++.++..   +   ...+..+++.|++...++++.
T Consensus       267 Lv~~--F~p~l~f~~~D~~~~~~~~~~---Le~F~~i~~~I~~~~~G~~LK~~Il~~GIv~~a~~YL~  329 (802)
T PF13764_consen  267 LVEH--FKPYLDFDKFDEEHSPDEQFK---LECFCEIAEGIPNNSNGNRLKDKILESGIVQDAIDYLL  329 (802)
T ss_pred             HHHH--HHHhcChhhcccccCchHHHH---HHHHHHHHhcCCCCCchHHHHHHHHHhhHHHHHHHHHH
Confidence            5422  1222221  11   1111222   3333333322   1   245677788888887777774

>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]

Probab=95.01  E-value=0.37  Score=40.36  Aligned_cols=149  Identities=12%  Similarity=0.116  Sum_probs=97.1

Q ss_pred             HHHHHHHHHHHHcCChhHHHHHHhCCChHHHHhcccCCCCcccccCCCcchHHHHHHHHHHHHHhc--CChhhHHHHHhc
Q 015851           79 AAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA--VKPEHQQLIVDN  156 (399)
Q Consensus        79 ~~~~a~~~L~~l~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~~~~~a~~~L~~l~--~~~~~~~~i~~~  156 (399)
                      -...|+..|.-++++|+.+.-|.+..+--.+..+|...+..      ++|+ .+|.-++.+++.+.  +++.....+...
T Consensus       116 RvcnaL~lLQclaShPetk~~Fl~AhiplflypfLntss~~------~~fE-yLRltsLGVIgaLvkNdsq~vi~fLltT  188 (315)
T COG5209         116 RVCNALNLLQCLASHPETKKVFLDAHIPLFLYPFLNTSSSN------SKFE-YLRLTSLGVIGALVKNDSQYVIKFLLTT  188 (315)
T ss_pred             HHHHHHHHHHHHhcCcchheeeeecccceeeHhhhhccccC------Cccc-eeeehHHHHHHHHHhCCCHHHHHHHHhh
Confidence            34577888888899999999999888766677777654432      2222 67888999999999  555666777788


Q ss_pred             CcHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhhcCchhHHHHHh-------cCChHHHH-HhhcCCCHHHHHHHH
Q 015851          157 GALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRM-------EGGIPPLV-ELLEFTDTKVQRAAA  228 (399)
Q Consensus       157 ~~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~-------~~~i~~L~-~ll~~~~~~v~~~a~  228 (399)
                      .++|.+++++..+++        --+..+..++..+..++...+.....       ..++..++ .+.+.+...+...++
T Consensus       189 eivPLcLrIme~gSE--------lSktvaifI~qkil~dDvGLqYiCqT~eRFyAv~~vln~mv~qlVs~~~~RLlKh~i  260 (315)
T COG5209         189 EIVPLCLRIMELGSE--------LSKTVAIFIFQKILGDDVGLQYICQTFERFYAVNLVLNSMVSQLVSLGSTRLLKHAI  260 (315)
T ss_pred             hHHHHHHHHHHhhhH--------HHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence            899999999988775        33344555555555444433321111       11222222 233456677788888


Q ss_pred             HHHHHhhcCChhhHH
Q 015851          229 GALRTLAFKNDENKN  243 (399)
Q Consensus       229 ~~L~~L~~~~~~~~~  243 (399)
                      ++-..|+. ++..+.
T Consensus       261 RcYlRLsd-~p~aR~  274 (315)
T COG5209         261 RCYLRLSD-KPHARA  274 (315)
T ss_pred             HHheeecC-CHhHHH
Confidence            88888876 454443

>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]

Probab=95.00  E-value=0.66  Score=47.34  Aligned_cols=189  Identities=15%  Similarity=0.150  Sum_probs=117.3

Q ss_pred             hhHHHHhhhhhcchhhhHHHHHHHHHHHHHHcCChhHHHHHHhCCChHHHHhcccCCCCcccccCCCcchHHHHHHHHHH
Q 015851           60 SAQVNVLNTTFSWLEADRAAAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFA  139 (399)
Q Consensus        60 ~~~~~~L~~~l~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~~~~~a~~~  139 (399)
                      +.+-+.+..-+  .+.+...|.+|+..+.....++.   ...+.|....+..++.....+.        +..+...++.+
T Consensus       252 ~ki~~~l~t~~--~s~~WK~R~Eale~l~~~l~e~~---~~~~~~~~~ll~~~~ki~~kDa--------N~~v~~~aa~~  318 (815)
T KOG1820|consen  252 SKITKNLETEM--LSKKWKDRKEALEELVAILEEAK---KEIVKGYTGLLGILLKIRLKDA--------NINVVMLAAQI  318 (815)
T ss_pred             hhcChHHHHhh--hccchHHHHHHHHHHHHHHhccc---cccccCcchHHHHHHHHhccCc--------chhHHHHHHHH
Confidence            33344443333  34566678899999999888755   1223333333333333222111        11567788999


Q ss_pred             HHHhc-C-ChhhHHHHHhcCcHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhhc
Q 015851          140 LGLLA-V-KPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLE  217 (399)
Q Consensus       140 L~~l~-~-~~~~~~~i~~~~~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~  217 (399)
                      |..++ . .+..+..  ..+..+.++..+.....        .++..+..++-..+...+       ....++.+...++
T Consensus       319 l~~ia~~lr~~~~~~--~~~v~p~lld~lkekk~--------~l~d~l~~~~d~~~ns~~-------l~~~~~~I~e~lk  381 (815)
T KOG1820|consen  319 LELIAKKLRPLFRKY--AKNVFPSLLDRLKEKKS--------ELRDALLKALDAILNSTP-------LSKMSEAILEALK  381 (815)
T ss_pred             HHHHHHhcchhhHHH--HHhhcchHHHHhhhccH--------HHHHHHHHHHHHHHhccc-------HHHHHHHHHHHhc
Confidence            99998 2 2333332  34577888888876655        555555555444442111       2345678899999


Q ss_pred             CCCHHHHHHHHHHHHHhhcCCh-hhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhc
Q 015851          218 FTDTKVQRAAAGALRTLAFKND-ENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVH  278 (399)
Q Consensus       218 ~~~~~v~~~a~~~L~~L~~~~~-~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~  278 (399)
                      +.++.++......+.......+ .....-.-.+.+|.++....+.+.+||..|..+++.+..
T Consensus       382 ~knp~~k~~~~~~l~r~~~~~~~~~~~~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~k  443 (815)
T KOG1820|consen  382 GKNPQIKGECLLLLDRKLRKLGPKTVEKETVKTLVPHLIKHINDTDKDVRKAALEAVAAVMK  443 (815)
T ss_pred             CCChhhHHHHHHHHHHHHhhcCCcCcchhhHHHHhHHHhhhccCCcHHHHHHHHHHHHHHHH
Confidence            9999999887777766665333 222222224578888889899999999999999888764

>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=94.69  E-value=1.2  Score=45.42  Aligned_cols=160  Identities=15%  Similarity=0.070  Sum_probs=92.8

Q ss_pred             HHHHHHHHhc--CChhhHHHHHhcCcHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhh---cCchhHHHHHhcCCh
Q 015851          135 GSAFALGLLA--VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAH---ENSSIKTRVRMEGGI  209 (399)
Q Consensus       135 ~a~~~L~~l~--~~~~~~~~i~~~~~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~---~~~~~~~~~~~~~~i  209 (399)
                      +|...+..++  +.++.-     .+.++.+++.+.+.........+..-..-|+.++++++.   .....+. ..+.-.+
T Consensus       391 Aa~~~l~~~~~KR~ke~l-----~k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~~~~-~mE~flv  464 (1010)
T KOG1991|consen  391 AALDFLTTLVSKRGKETL-----PKILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKSPYKS-QMEYFLV  464 (1010)
T ss_pred             HHHHHHHHHHHhcchhhh-----hhHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCCchHH-HHHHHHH
Confidence            4555555555  222222     346777888887543332222222455667888888874   2222222 2223334


Q ss_pred             HHHHHhhcCCCHHHHHHHHHHHHHhhcCChhhHHHHHhcCCHHHHHHhhc-CCCHHHHHHHHHHHHHhhcCChhHHHHHH
Q 015851          210 PPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLR-SEDSAIHYEAVGVIGNLVHSSPNIKKEVL  288 (399)
Q Consensus       210 ~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~L~~ll~-~~~~~v~~~a~~~L~~l~~~~~~~~~~~~  288 (399)
                      +.+...++++.--+|..||+.++..+.  .+.+....-..+++...+.|. +++-.|+..|+-+|..+..+.+.....+.
T Consensus       465 ~hVfP~f~s~~g~Lrarac~vl~~~~~--~df~d~~~l~~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~~~~e~~~  542 (1010)
T KOG1991|consen  465 NHVFPEFQSPYGYLRARACWVLSQFSS--IDFKDPNNLSEALELTHNCLLNDNELPVRVEAALALQSFISNQEQADEKVS  542 (1010)
T ss_pred             HHhhHhhcCchhHHHHHHHHHHHHHHh--ccCCChHHHHHHHHHHHHHhccCCcCchhhHHHHHHHHHHhcchhhhhhHh
Confidence            455556678778899999999999994  222222222335666777776 67779999999999998865443322121


Q ss_pred             --HCCCcHHHHHhhcC
Q 015851          289 --AAGALQPVIGLLSS  302 (399)
Q Consensus       289 --~~~~l~~L~~lL~~  302 (399)
                        -.+.++.|+++.+.
T Consensus       543 ~hvp~~mq~lL~L~ne  558 (1010)
T KOG1991|consen  543 AHVPPIMQELLKLSNE  558 (1010)
T ss_pred             hhhhHHHHHHHHHHHh
Confidence              12445556665554

>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]

Probab=94.66  E-value=0.41  Score=45.70  Aligned_cols=103  Identities=19%  Similarity=0.203  Sum_probs=75.7

Q ss_pred             CCHHHHHHh-hcCCCHHHHHHHHHHHHHhhcCChhHHHHHHHCCCcHHHHHhhc-CCChHHHHHHHHHHHHhhccChhhH
Q 015851          249 NALPTLILM-LRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLS-SCCSESQREAALLLGQFAATDSDCK  326 (399)
Q Consensus       249 ~~~~~L~~l-l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~-~~~~~v~~~a~~~L~~l~~~~~~~~  326 (399)
                      |++..++.. .++.+.+||+.|.-+|+-+|..+..         .+...+++|. +.++.+|...+.+|+-.|++.....
T Consensus       551 ~vv~~lLh~avsD~nDDVrRAAViAlGfvc~~D~~---------~lv~tvelLs~shN~hVR~g~AvaLGiacag~G~~~  621 (926)
T COG5116         551 GVVSTLLHYAVSDGNDDVRRAAVIALGFVCCDDRD---------LLVGTVELLSESHNFHVRAGVAVALGIACAGTGDKV  621 (926)
T ss_pred             hhHhhhheeecccCchHHHHHHHHheeeeEecCcc---------hhhHHHHHhhhccchhhhhhhHHHhhhhhcCCccHH
Confidence            455566665 5667889999999999998865433         3555666665 6677899999999998887533221


Q ss_pred             HHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhccCCCC
Q 015851          327 VHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQVITVS  367 (399)
Q Consensus       327 ~~l~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~  367 (399)
                             ++..|-.++.+++.-||+.|+.+++.+.....++
T Consensus       622 -------a~diL~~L~~D~~dfVRQ~AmIa~~mIl~Q~n~~  655 (926)
T COG5116         622 -------ATDILEALMYDTNDFVRQSAMIAVGMILMQCNPE  655 (926)
T ss_pred             -------HHHHHHHHhhCcHHHHHHHHHHHHHHHHhhcCcc
Confidence                   2556667888889999999999999887666654

>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]

Probab=94.58  E-value=0.98  Score=43.07  Aligned_cols=157  Identities=11%  Similarity=0.178  Sum_probs=115.1

Q ss_pred             hHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhhHHHHHhcCCHHHHHHhhcCCCH----HHHHHHHHHHHHhhcCChhHH
Q 015851          209 IPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDS----AIHYEAVGVIGNLVHSSPNIK  284 (399)
Q Consensus       209 i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~L~~ll~~~~~----~v~~~a~~~L~~l~~~~~~~~  284 (399)
                      ...+++.+.+++...+..+...|..++. .+.....++...++..|.+++.+++.    ++....+.++..+....- ..
T Consensus        85 a~~i~e~l~~~~~~~~~~a~k~l~sls~-d~~fa~efi~~~gl~~L~~liedg~~~~~~~~L~~~L~af~elmehgv-vs  162 (713)
T KOG2999|consen   85 AKRIMEILTEGNNISKMEALKELDSLSL-DPTFAEEFIRCSGLELLFSLIEDGRVCMSSELLSTSLRAFSELMEHGV-VS  162 (713)
T ss_pred             HHHHHHHHhCCCcHHHHHHHHHHhhccc-cHHHHHHHHhcchHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhce-ee
Confidence            4567888889888888889999999998 78899999999999999999987643    566666666666543211 10


Q ss_pred             HHHHHCCCcHHHHHhhc--CCChHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhc
Q 015851          285 KEVLAAGALQPVIGLLS--SCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQ  362 (399)
Q Consensus       285 ~~~~~~~~l~~L~~lL~--~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~  362 (399)
                      -......++.....+.+  .-+..+-..|+..|-++..+++.....+.+.--+..|+..++..+..++..|...+..+-.
T Consensus       163 W~~~~~~fV~~~a~~V~~~~~~a~~~~~AL~~LE~~vl~s~~~~~~v~eev~i~~li~hlq~~n~~i~~~aial~nal~~  242 (713)
T KOG2999|consen  163 WESVSNDFVVSMASYVNAKREDANTLLAALQMLESLVLGSDTLRQLVAEEVPIETLIRHLQVSNQRIQTCAIALLNALFR  242 (713)
T ss_pred             eeecccHHHHHHHHHHhhhhhcccchHHHHHHHHHHHhCChHHHHHHHhcCcHHHHHHHHHhcchHHHHHHHHHHHHHHh
Confidence            11112233444444442  2334566778888888888777778888888889999999998899998888888888877


Q ss_pred             cCCCC
Q 015851          363 VITVS  367 (399)
Q Consensus       363 ~~~~~  367 (399)
                      ..++.
T Consensus       243 ~a~~~  247 (713)
T KOG2999|consen  243 KAPDD  247 (713)
T ss_pred             hCChH
Confidence            77764

>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=94.56  E-value=2.6  Score=41.97  Aligned_cols=111  Identities=15%  Similarity=0.244  Sum_probs=74.8

Q ss_pred             CHHHHHHHHHHHHHhhcCChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHHCCCcHHHHHh
Q 015851          220 DTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGL  299 (399)
Q Consensus       220 ~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~l  299 (399)
                      +.+.|....+++...+...++...     .+++.|+..+.+.++......+..+.......+..+..     ++..++..
T Consensus       372 ~~~yRqlLiktih~cav~Fp~~aa-----tvV~~ll~fisD~N~~aas~vl~FvrE~iek~p~Lr~~-----ii~~l~~~  441 (948)
T KOG1058|consen  372 NGKYRQLLIKTIHACAVKFPEVAA-----TVVSLLLDFISDSNEAAASDVLMFVREAIEKFPNLRAS-----IIEKLLET  441 (948)
T ss_pred             chHHHHHHHHHHHHHhhcChHHHH-----HHHHHHHHHhccCCHHHHHHHHHHHHHHHHhCchHHHH-----HHHHHHHh
Confidence            356788889999988876666443     35788999999988887777777777766555555443     35556655


Q ss_pred             hc-CCChHHHHHHHHHHHHhhccChhhHH--HHHh--cCCHHHHHH
Q 015851          300 LS-SCCSESQREAALLLGQFAATDSDCKV--HIVQ--RGAVRPLIE  340 (399)
Q Consensus       300 L~-~~~~~v~~~a~~~L~~l~~~~~~~~~--~l~~--~g~v~~L~~  340 (399)
                      +. -.+.++...|+|.++..|....+.+.  ..++  .|=+|.+..
T Consensus       442 ~~~irS~ki~rgalwi~GeYce~~~~i~~~~k~i~~slGEvp~~~s  487 (948)
T KOG1058|consen  442 FPQIRSSKICRGALWILGEYCEGLSEIQSVIKIIRQSLGEVPIVCS  487 (948)
T ss_pred             hhhhcccccchhHHHHHHHHHhhhHHHHHHHHHHHHhccccceehH
Confidence            54 24557888999999999876543332  2222  455555443

>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]

Probab=94.55  E-value=8.4  Score=41.71  Aligned_cols=109  Identities=17%  Similarity=0.236  Sum_probs=81.4

Q ss_pred             CHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHHCCCcHHHHHhhcCCChHHHHHHHHHHHHhhccChhhHHHH
Q 015851          250 ALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHI  329 (399)
Q Consensus       250 ~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l  329 (399)
                      .+..++..+..+...+|..|+.||..+...++...   ....+-..+..-+...+..||+.|+..++......++....+
T Consensus       817 yLk~Il~~l~e~~ialRtkAlKclS~ive~Dp~vL---~~~dvq~~Vh~R~~DssasVREAaldLvGrfvl~~~e~~~qy  893 (1692)
T KOG1020|consen  817 YLKLILSVLGENAIALRTKALKCLSMIVEADPSVL---SRPDVQEAVHGRLNDSSASVREAALDLVGRFVLSIPELIFQY  893 (1692)
T ss_pred             HHHHHHHHhcCchHHHHHHHHHHHHHHHhcChHhh---cCHHHHHHHHHhhccchhHHHHHHHHHHhhhhhccHHHHHHH
Confidence            56778888888889999999999999987654432   112233344444556777999999999998877667665555


Q ss_pred             HhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhccCCC
Q 015851          330 VQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQVITV  366 (399)
Q Consensus       330 ~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~  366 (399)
                      .+     .+..-+.++...||+.+..+++.+|...|+
T Consensus       894 Y~-----~i~erIlDtgvsVRKRvIKIlrdic~e~pd  925 (1692)
T KOG1020|consen  894 YD-----QIIERILDTGVSVRKRVIKILRDICEETPD  925 (1692)
T ss_pred             HH-----HHHhhcCCCchhHHHHHHHHHHHHHHhCCC
Confidence            44     355555677888999999999999998887

>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]

Probab=94.52  E-value=0.93  Score=46.27  Aligned_cols=143  Identities=17%  Similarity=0.171  Sum_probs=105.5

Q ss_pred             cCCCHHHHHHHHHHHHHhhcCChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHHCCCcHHH
Q 015851          217 EFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPV  296 (399)
Q Consensus       217 ~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L  296 (399)
                      .+.|..+...++.+|..|+.........+. .+.+|.++..+......++..+..++-.++...+.       ....+.+
T Consensus       305 kDaN~~v~~~aa~~l~~ia~~lr~~~~~~~-~~v~p~lld~lkekk~~l~d~l~~~~d~~~ns~~l-------~~~~~~I  376 (815)
T KOG1820|consen  305 KDANINVVMLAAQILELIAKKLRPLFRKYA-KNVFPSLLDRLKEKKSELRDALLKALDAILNSTPL-------SKMSEAI  376 (815)
T ss_pred             cCcchhHHHHHHHHHHHHHHhcchhhHHHH-HhhcchHHHHhhhccHHHHHHHHHHHHHHHhcccH-------HHHHHHH
Confidence            456778888899999999876555533333 34788888888888888888888877776642221       2357788


Q ss_pred             HHhhcCCChHHHHHHHHHHHHhhccCh-hhHHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhccCCCC
Q 015851          297 IGLLSSCCSESQREAALLLGQFAATDS-DCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQVITVS  367 (399)
Q Consensus       297 ~~lL~~~~~~v~~~a~~~L~~l~~~~~-~~~~~l~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~  367 (399)
                      +.++.+.++.++.+....+........ .....-.-.+++|.++....+.+.+||.+|..++..+.+.....
T Consensus       377 ~e~lk~knp~~k~~~~~~l~r~~~~~~~~~~~~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~k~~Ge~  448 (815)
T KOG1820|consen  377 LEALKGKNPQIKGECLLLLDRKLRKLGPKTVEKETVKTLVPHLIKHINDTDKDVRKAALEAVAAVMKVHGEE  448 (815)
T ss_pred             HHHhcCCChhhHHHHHHHHHHHHhhcCCcCcchhhHHHHhHHHhhhccCCcHHHHHHHHHHHHHHHHHhhHH
Confidence            889999999999997777776665433 22233333567889999999999999999999999998877754

>KOG2933 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.34  E-value=0.42  Score=42.16  Aligned_cols=143  Identities=17%  Similarity=0.180  Sum_probs=98.6

Q ss_pred             hHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHH
Q 015851          209 IPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVL  288 (399)
Q Consensus       209 i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~  288 (399)
                      +...+..|.+.++.....++..+..|+..+++....+... ++-.+++-+++....|...||.+++.|..........  
T Consensus        90 l~~~l~~L~s~dW~~~vdgLn~irrLs~fh~e~l~~~L~~-vii~vvkslKNlRS~VsraA~~t~~difs~ln~~i~~--  166 (334)
T KOG2933|consen   90 LKQALKKLSSDDWEDKVDGLNSIRRLSEFHPESLNPMLHE-VIIAVVKSLKNLRSAVSRAACMTLADIFSSLNNSIDQ--  166 (334)
T ss_pred             HHHHHHHhchHHHHHHhhhHHHHHHHHhhhHHHHHHHHHH-HHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence            3445667788899999999999999998776655555544 5667778888888899999999999998543332222  


Q ss_pred             HCCCcHHHHHhhc----CCChHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhccC
Q 015851          289 AAGALQPVIGLLS----SCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQVI  364 (399)
Q Consensus       289 ~~~~l~~L~~lL~----~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~  364 (399)
                         .+..++..|.    ..+..+++.|-.+|..++..-  ..     ..+++.|+..+.+.++.++..++.+..++...-
T Consensus       167 ---~ld~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~v--tp-----~~~L~~L~~~~~~~n~r~r~~a~~~~~~~v~rl  236 (334)
T KOG2933|consen  167 ---ELDDLVTQLLHKASQDNRFVREDAEKALVAMVNHV--TP-----QKLLRKLIPILQHSNPRVRAKAALCFSRCVIRL  236 (334)
T ss_pred             ---HHHHHHHHHHhhhcccchHHHHHHHHHHHHHHhcc--Ch-----HHHHHHHHHHHhhhchhhhhhhhccccccceec
Confidence               3444444432    344578888989999887432  11     123566777777778888887777666655443

>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=94.33  E-value=4  Score=40.41  Aligned_cols=129  Identities=16%  Similarity=0.153  Sum_probs=86.1

Q ss_pred             HHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhhHHHHHhcCCHHHHHHhhc
Q 015851          180 SVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLR  259 (399)
Q Consensus       180 ~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~L~~ll~  259 (399)
                      .+...+...+..+-+.+....  + -.+.+..+++-..+++..||..++..|+.++. .......-+-.+....+..-+.
T Consensus        61 RIl~fla~fv~sl~q~d~e~D--l-V~~~f~hlLRg~Eskdk~VRfrvlqila~l~d-~~~eidd~vfn~l~e~l~~Rl~  136 (892)
T KOG2025|consen   61 RILSFLARFVESLPQLDKEED--L-VAGTFYHLLRGTESKDKKVRFRVLQILALLSD-ENAEIDDDVFNKLNEKLLIRLK  136 (892)
T ss_pred             HHHHHHHHHHHhhhccCchhh--H-HHHHHHHHHhcccCcchhHHHHHHHHHHHHhc-cccccCHHHHHHHHHHHHHHHh
Confidence            455555555555554333221  2 24556667777788889999999999999986 3333334444556677777777


Q ss_pred             CCCHHHHHHHHHHHHHhhcCChhHHHHHHHCCCcHHHHHhhc-CCChHHHHHHHHHHHH
Q 015851          260 SEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLS-SCCSESQREAALLLGQ  317 (399)
Q Consensus       260 ~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~-~~~~~v~~~a~~~L~~  317 (399)
                      +..+.||..|+.+|+.+-....+-     +..++..+..+++ .++++||..|+..|.+
T Consensus       137 Drep~VRiqAv~aLsrlQ~d~~de-----e~~v~n~l~~liqnDpS~EVRRaaLsnI~v  190 (892)
T KOG2025|consen  137 DREPNVRIQAVLALSRLQGDPKDE-----ECPVVNLLKDLIQNDPSDEVRRAALSNISV  190 (892)
T ss_pred             ccCchHHHHHHHHHHHHhcCCCCC-----cccHHHHHHHHHhcCCcHHHHHHHHHhhcc
Confidence            889999999999999997322111     1235667777776 5777999887665543

>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=94.26  E-value=6.6  Score=39.38  Aligned_cols=55  Identities=29%  Similarity=0.315  Sum_probs=40.7

Q ss_pred             HHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhhcCCh
Q 015851          180 SVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKND  239 (399)
Q Consensus       180 ~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~  239 (399)
                      .+...++.++.++....+.  . +  ...+..+--+++++...+|..|.++|..++...|
T Consensus       260 mV~~EaArai~~l~~~~~r--~-l--~pavs~Lq~flssp~~~lRfaAvRtLnkvAm~~P  314 (865)
T KOG1078|consen  260 MVIYEAARAIVSLPNTNSR--E-L--APAVSVLQLFLSSPKVALRFAAVRTLNKVAMKHP  314 (865)
T ss_pred             HHHHHHHHHHhhccccCHh--h-c--chHHHHHHHHhcCcHHHHHHHHHHHHHHHHHhCC
Confidence            5677788888888754332  1 1  1267777778889999999999999999997544

>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []

Probab=94.08  E-value=0.4  Score=39.87  Aligned_cols=81  Identities=19%  Similarity=0.189  Sum_probs=62.9

Q ss_pred             ChhhHHHHHhcCCHHHHHHhhcC---------CCHHHHHHHHHHHHHhhcCChhHHHHHHH-CCCcHHHHHhhcCCChHH
Q 015851          238 NDENKNQIVECNALPTLILMLRS---------EDSAIHYEAVGVIGNLVHSSPNIKKEVLA-AGALQPVIGLLSSCCSES  307 (399)
Q Consensus       238 ~~~~~~~~~~~~~~~~L~~ll~~---------~~~~v~~~a~~~L~~l~~~~~~~~~~~~~-~~~l~~L~~lL~~~~~~v  307 (399)
                      .......|++.||+..|+.+|..         .+......++.|+..|... ..+...++. .+++..+...|.+++..+
T Consensus        96 ~~~Wv~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal~n~-~~G~~~v~~~~~~v~~i~~~L~s~~~~~  174 (187)
T PF06371_consen   96 PISWVQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKALMNT-KYGLEAVLSHPDSVNLIALSLDSPNIKT  174 (187)
T ss_dssp             -HHHHHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHHTSS-HHHHHHHHCSSSHHHHHHHT--TTSHHH
T ss_pred             CchHHHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHHcc-HHHHHHHHcCcHHHHHHHHHHCCCCHHH
Confidence            34567888899999999988852         3557889999999999854 555666665 678999999999999999


Q ss_pred             HHHHHHHHHHhh
Q 015851          308 QREAALLLGQFA  319 (399)
Q Consensus       308 ~~~a~~~L~~l~  319 (399)
                      +..++..|+.+|
T Consensus       175 r~~~leiL~~lc  186 (187)
T PF06371_consen  175 RKLALEILAALC  186 (187)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            999999998876

Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.

>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length

Probab=93.90  E-value=0.8  Score=37.01  Aligned_cols=148  Identities=14%  Similarity=0.130  Sum_probs=84.1

Q ss_pred             hhhHHHHhhhhhcchhhhHHHHHHHHHHHHHHcC-ChhHHHHHHhCCChHHHHhcccCCCCcccccCCCcchHHHHHHHH
Q 015851           59 VSAQVNVLNTTFSWLEADRAAAKRATHVLAELAK-NEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSA  137 (399)
Q Consensus        59 ~~~~~~~L~~~l~~~~~~~~~~~~a~~~L~~l~~-~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~~~~~a~  137 (399)
                      -|.+++.|.+++... .+..+|.+++++|+.+.. ||...+.+....-  .-  --.....            ....   
T Consensus         8 yP~LL~~L~~iLk~e-~s~~iR~E~lr~lGilGALDP~~~k~~~~~~~--~~--~~~~~~~------------~~~~---   67 (160)
T PF11865_consen    8 YPELLDILLNILKTE-QSQSIRREALRVLGILGALDPYKHKSIQKSLD--SK--SSENSND------------ESTD---   67 (160)
T ss_pred             hHHHHHHHHHHHHhC-CCHHHHHHHHHHhhhccccCcHHHhcccccCC--cc--ccccccc------------cchh---
Confidence            477788888888643 568899999999999988 7665443221111  00  0000000            0111   


Q ss_pred             HHHHHhcCChhhHHHHHhcCcHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhhc
Q 015851          138 FALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLE  217 (399)
Q Consensus       138 ~~L~~l~~~~~~~~~i~~~~~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~  217 (399)
                      ..+.+....+ ..+...-.-++..|++.|++.+-.       .-...+..++.++... ...+-.-.-..++|.++..++
T Consensus        68 ~~l~~~~~~~-~~ee~y~~vvi~~L~~iL~D~sLs-------~~h~~vv~ai~~If~~-l~~~cv~~L~~viP~~l~~i~  138 (160)
T PF11865_consen   68 ISLPMMGISP-SSEEYYPTVVINALMRILRDPSLS-------SHHTAVVQAIMYIFKS-LGLKCVPYLPQVIPIFLRVIR  138 (160)
T ss_pred             hHHhhccCCC-chHHHHHHHHHHHHHHHHHhhhhH-------HHHHHHHHHHHHHHHh-cCcCchhHHHHHhHHHHHHHH
Confidence            1111111111 122222233678888888877654       4445667777777632 222222333567899999999


Q ss_pred             CCCHHHHHHHHHHHHHhh
Q 015851          218 FTDTKVQRAAAGALRTLA  235 (399)
Q Consensus       218 ~~~~~v~~~a~~~L~~L~  235 (399)
                      +.+...++...+-|+.|.
T Consensus       139 ~~~~~~~e~~~~qL~~lv  156 (160)
T PF11865_consen  139 TCPDSLREFYFQQLADLV  156 (160)
T ss_pred             hCCHHHHHHHHHHHHHHH
Confidence            877788887777776665

It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].

>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []

Probab=93.72  E-value=5.5  Score=36.54  Aligned_cols=161  Identities=13%  Similarity=0.122  Sum_probs=117.7

Q ss_pred             hHHHHHhhcCCCHHHHHHHHHHHHHhhc-CChhhHHHHHhc--CCHHHHHHhhcCC-----C--------HHHHHHHHHH
Q 015851          209 IPPLVELLEFTDTKVQRAAAGALRTLAF-KNDENKNQIVEC--NALPTLILMLRSE-----D--------SAIHYEAVGV  272 (399)
Q Consensus       209 i~~L~~ll~~~~~~v~~~a~~~L~~L~~-~~~~~~~~~~~~--~~~~~L~~ll~~~-----~--------~~v~~~a~~~  272 (399)
                      ++.+...|.+..+.+...+++.|..++. ........+...  -..+.+.+++...     +        +.+|...+..
T Consensus        58 ~k~lyr~L~~~~~~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~~~l~kll~~~~~~~~~~~~~~~~~~siR~~fI~F  137 (330)
T PF11707_consen   58 LKLLYRSLSSSKPSLTNPALRLLTAIVSFDGGALAREVLRSFDFSLKSLPKLLTPRKKEKEKDSESSKSKPSIRTNFIRF  137 (330)
T ss_pred             HHHHHHHhCcCcHHHHHHHHHHHHHHHccCCHHHHHHHHHhcCCchhhHHHHhccccccccccccccccCcCHHHHHHHH
Confidence            7778888888888899999999999998 444566666552  2345666666421     1        2788888876


Q ss_pred             HHHhh-cCChhHHHHHHH-CCCcHHHHHhhcCCChHHHHHHHHHHHHhhccCh----hhHHHHHhcCCHHHHHHhhCCCC
Q 015851          273 IGNLV-HSSPNIKKEVLA-AGALQPVIGLLSSCCSESQREAALLLGQFAATDS----DCKVHIVQRGAVRPLIEMLQSPD  346 (399)
Q Consensus       273 L~~l~-~~~~~~~~~~~~-~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~----~~~~~l~~~g~v~~L~~ll~~~~  346 (399)
                      +..+. ..++..+..++. .+.+..+.+.|...++++....+.+|..-.-.++    ..+..+.....+..|..+-...+
T Consensus       138 ~Lsfl~~~~~~~~~~lL~~~~~~~~l~k~l~~D~~~~v~~iL~~l~~~Vl~~~~v~r~~K~~~fn~~~L~~l~~Ly~~~~  217 (330)
T PF11707_consen  138 WLSFLSSGDPELKRDLLSQKKLMSALFKGLRKDPPETVILILETLKDKVLKDSSVSRSTKCKLFNEWTLSQLASLYSRDG  217 (330)
T ss_pred             HHHHHccCCHHHHHHHHHcCchHHHHHhcccCCCHHHHHHHHHHHHHHhccCCCCChhhhhhhcCHHHHHHHHHHhcccC
Confidence            66655 445556666665 4568888899988888999998888885433333    34556777778889999777666


Q ss_pred             H----HHHHHHHHHHHHhhccCCCCcc
Q 015851          347 V----QLREMSAFALGRLAQVITVSVL  369 (399)
Q Consensus       347 ~----~v~~~a~~~L~~l~~~~~~~~~  369 (399)
                      +    .++..+-..|..+|.+...++.
T Consensus       218 ~~~~~~~~~~vh~fL~~lcT~p~~Gv~  244 (330)
T PF11707_consen  218 EDEKSSVADLVHEFLLALCTDPKHGVC  244 (330)
T ss_pred             CcccchHHHHHHHHHHHHhcCCCcccc
Confidence            6    8999999999999987776643

The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.

>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]

Probab=93.57  E-value=2.8  Score=45.08  Aligned_cols=169  Identities=12%  Similarity=0.148  Sum_probs=106.4

Q ss_pred             HHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhhHHHHHhcCCHHHHHHhhcCCC
Q 015851          183 RRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSED  262 (399)
Q Consensus       183 ~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~L~~ll~~~~  262 (399)
                      ..+.++...++...+-.+. +  .+.+..++..+..+.+.+|..|++||..+...++..   +....+-..+..-+.+..
T Consensus       795 ~~a~li~~~la~~r~f~~s-f--D~yLk~Il~~l~e~~ialRtkAlKclS~ive~Dp~v---L~~~dvq~~Vh~R~~Dss  868 (1692)
T KOG1020|consen  795 DDAKLIVFYLAHARSFSQS-F--DPYLKLILSVLGENAIALRTKALKCLSMIVEADPSV---LSRPDVQEAVHGRLNDSS  868 (1692)
T ss_pred             hhHHHHHHHHHhhhHHHHh-h--HHHHHHHHHHhcCchHHHHHHHHHHHHHHHhcChHh---hcCHHHHHHHHHhhccch
Confidence            3445555555543332111 1  245777888888888999999999999999854432   112222233444556778


Q ss_pred             HHHHHHHHHHHHHhhcCChhHHHHHHHCCCcHHHHHhhcCCChHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHhh
Q 015851          263 SAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEML  342 (399)
Q Consensus       263 ~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~v~~L~~ll  342 (399)
                      ..||..|+..+|......++.....     -..+.+-+..++..||+.+...+..+|...|+-- .+.+.  ...++.-.
T Consensus       869 asVREAaldLvGrfvl~~~e~~~qy-----Y~~i~erIlDtgvsVRKRvIKIlrdic~e~pdf~-~i~~~--cakmlrRv  940 (1692)
T KOG1020|consen  869 ASVREAALDLVGRFVLSIPELIFQY-----YDQIIERILDTGVSVRKRVIKILRDICEETPDFS-KIVDM--CAKMLRRV  940 (1692)
T ss_pred             hHHHHHHHHHHhhhhhccHHHHHHH-----HHHHHhhcCCCchhHHHHHHHHHHHHHHhCCChh-hHHHH--HHHHHHHh
Confidence            8999999999998776666654433     3456666677888999999999999997655432 22221  22222333


Q ss_pred             CCCCHHHHHHHHHHHHHhhccCC
Q 015851          343 QSPDVQLREMSAFALGRLAQVIT  365 (399)
Q Consensus       343 ~~~~~~v~~~a~~~L~~l~~~~~  365 (399)
                      ++....|++.+..++.++=....
T Consensus       941 ~DEEg~I~kLv~etf~klWF~p~  963 (1692)
T KOG1020|consen  941 NDEEGNIKKLVRETFLKLWFTPV  963 (1692)
T ss_pred             ccchhHHHHHHHHHHHHHhccCC
Confidence            34344477777777777655444

>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []

Probab=93.56  E-value=0.17  Score=42.18  Aligned_cols=91  Identities=13%  Similarity=0.153  Sum_probs=64.5

Q ss_pred             CChhhHHHHHhcCcHHHHHHHHhccccCccc-cccHHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhhcCCCHHH
Q 015851          145 VKPEHQQLIVDNGALSHLVNLLKRHMDSNCS-RAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKV  223 (399)
Q Consensus       145 ~~~~~~~~i~~~~~i~~L~~~L~~~~~~~~~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v  223 (399)
                      ........|++.||+..|+.+|......... ....++...++.+|..+..........+...+++..|+..|.+++..+
T Consensus        95 ~~~~Wv~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal~n~~~G~~~v~~~~~~v~~i~~~L~s~~~~~  174 (187)
T PF06371_consen   95 NPISWVQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKALMNTKYGLEAVLSHPDSVNLIALSLDSPNIKT  174 (187)
T ss_dssp             S-HHHHHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHHTSSHHHHHHHHCSSSHHHHHHHT--TTSHHH
T ss_pred             CCchHHHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHHccHHHHHHHHcCcHHHHHHHHHHCCCCHHH
Confidence            3345667788899999999998764332111 122367888999999999544444444445688999999999999999


Q ss_pred             HHHHHHHHHHhh
Q 015851          224 QRAAAGALRTLA  235 (399)
Q Consensus       224 ~~~a~~~L~~L~  235 (399)
                      +..++..|..++
T Consensus       175 r~~~leiL~~lc  186 (187)
T PF06371_consen  175 RKLALEILAALC  186 (187)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            999999998876

Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=93.09  E-value=2.5  Score=42.92  Aligned_cols=194  Identities=16%  Similarity=0.163  Sum_probs=114.3

Q ss_pred             HHHHHcCC-hhHHHHHHhCCChHHHHhcccCCCCcccccCCCcchHHHHHHHHHHHHHhcCChhhHHHHHhcCcHH--HH
Q 015851           86 VLAELAKN-EEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIVDNGALS--HL  162 (399)
Q Consensus        86 ~L~~l~~~-~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~~~i~--~L  162 (399)
                      +|.++..+ ++.+..+.+.|++..+...++.-+..           +++..+...+.+++...+.+........+.  .+
T Consensus       494 ~l~~~t~~~~~~C~~~l~~~g~~~~~~~l~~f~~~-----------~~~~~il~~l~n~~~~~~~~~~~~~~~~~~~~~f  562 (699)
T KOG3665|consen  494 ALWNITDENPETCKEFLDNGGMKLLFKCLESFDNE-----------ELHRKILGLLGNLAEVLELRELLMIFEFIDFSVF  562 (699)
T ss_pred             HHHhhhcCCHHHHHHHHhcccHHHHHHHHhhccch-----------hHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHH
Confidence            56677764 99999999999999999999875332           789999999999995554444333222222  33


Q ss_pred             HHHHhccccCccccccHHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhhH
Q 015851          163 VNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENK  242 (399)
Q Consensus       163 ~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~  242 (399)
                      -.++...+..       +....++++|+.+..+.+....    .           ..-+.+...-..++.....    ..
T Consensus       563 ~~~~~~w~~~-------ersY~~~siLa~ll~~~~~~~~----~-----------~~r~~~~~~l~e~i~~~~~----~~  616 (699)
T KOG3665|consen  563 KVLLNKWDSI-------ERSYNAASILALLLSDSEKTTE----C-----------VFRNSVNELLVEAISRWLT----SE  616 (699)
T ss_pred             HHHHhhcchh-------hHHHHHHHHHHHHHhCCCcCcc----c-----------cchHHHHHHHHHHhhccCc----cc
Confidence            3333333321       5567777887777754432000    0           0012222222222222221    11


Q ss_pred             HHHHhcCCHHH-HHHhhc-CCCHHHHHHHHHHHHHhhcCChhHHHHHHHCCCcHHHHHhhcCC-ChHHHHHHHHHHH
Q 015851          243 NQIVECNALPT-LILMLR-SEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSC-CSESQREAALLLG  316 (399)
Q Consensus       243 ~~~~~~~~~~~-L~~ll~-~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~-~~~v~~~a~~~L~  316 (399)
                      ..+.-...+.. +.+++. +..+..+.+|+|++.+++...+++...+...++++.+...-... -..++..+...+.
T Consensus       617 ~~~~~~~~f~~~~~~il~~s~~~g~~lWal~ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  693 (699)
T KOG3665|consen  617 IRVINDRSFFPRILRILRLSKSDGSQLWALWTIKNVLEQNKEYCKLVRESNGFELIENIRVLSEVVDVKEEAVLVIE  693 (699)
T ss_pred             eeehhhhhcchhHHHHhcccCCCchHHHHHHHHHHHHHcChhhhhhhHhccchhhhhhcchhHHHHHHHHHHHHHhh
Confidence            11111112222 444444 45678899999999999988888878888889888887764322 3344444444443

>PF13251 DUF4042: Domain of unknown function (DUF4042)

Probab=93.07  E-value=2.6  Score=34.71  Aligned_cols=142  Identities=15%  Similarity=0.159  Sum_probs=86.9

Q ss_pred             HHHHHHHHHHHhhcC-ChhhH----HHHHh-------cCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHHC
Q 015851          223 VQRAAAGALRTLAFK-NDENK----NQIVE-------CNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAA  290 (399)
Q Consensus       223 v~~~a~~~L~~L~~~-~~~~~----~~~~~-------~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~  290 (399)
                      +|..|+.+|..++.. ++...    ..+.-       ......+.-++.++++.+|..|+.++..|-.+........-+.
T Consensus         2 vR~~Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae~~   81 (182)
T PF13251_consen    2 VRQAALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCILKDPSPKVRAAAASALAALLEGSKPFLAQAEES   81 (182)
T ss_pred             hhHHHHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHHcCCchhHHHHHHHHHHHHHHccHHHHHHHHhc
Confidence            577778888777763 11110    11111       1223445556778899999999999999987654433332221


Q ss_pred             C-------------------CcHHHHHhhcC-CChHHHHHHHHHHHHhhccChhhH--HHHHhcCCHHHHHHhhCCCCHH
Q 015851          291 G-------------------ALQPVIGLLSS-CCSESQREAALLLGQFAATDSDCK--VHIVQRGAVRPLIEMLQSPDVQ  348 (399)
Q Consensus       291 ~-------------------~l~~L~~lL~~-~~~~v~~~a~~~L~~l~~~~~~~~--~~l~~~g~v~~L~~ll~~~~~~  348 (399)
                      +                   .-..|+..|+. .+..+....+.++..+....|-.+  ..+.. .++..+..++.+.|+.
T Consensus        82 ~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q~lK~la~Lv~~tPY~rL~~~ll~-~~v~~v~~~l~~~d~~  160 (182)
T PF13251_consen   82 KGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLTQLLKCLAVLVQATPYHRLPPGLLT-EVVTQVRPLLRHRDPN  160 (182)
T ss_pred             CCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHccCChhhcCHhHHH-HHHHHHHHHHhcCCCc
Confidence            1                   22334444543 455777788889998887655322  11211 2345555666778999


Q ss_pred             HHHHHHHHHHHhhccCC
Q 015851          349 LREMSAFALGRLAQVIT  365 (399)
Q Consensus       349 v~~~a~~~L~~l~~~~~  365 (399)
                      ++..+..+++.+....+
T Consensus       161 v~v~~l~~~~~l~s~~~  177 (182)
T PF13251_consen  161 VRVAALSCLGALLSVQP  177 (182)
T ss_pred             HHHHHHHHHHHHHcCCC
Confidence            99999999988876554

>KOG1243 consensus Protein kinase [General function prediction only]

Probab=93.02  E-value=0.61  Score=45.76  Aligned_cols=171  Identities=16%  Similarity=0.202  Sum_probs=111.3

Q ss_pred             HhcCChHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhH
Q 015851          204 RMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNI  283 (399)
Q Consensus       204 ~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~  283 (399)
                      ++.+++|.|+++++..+..+|-..+.-+-+...   .....+++..++|.+..-+.+.++.+|...+.++..|+..-.  
T Consensus       327 yq~~i~p~l~kLF~~~Dr~iR~~LL~~i~~~i~---~Lt~~~~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~kL~--  401 (690)
T KOG1243|consen  327 YQVRIIPVLLKLFKSPDRQIRLLLLQYIEKYID---HLTKQILNDQIFPHVALGFLDTNATLREQTLKSMAVLAPKLS--  401 (690)
T ss_pred             cccchhhhHHHHhcCcchHHHHHHHHhHHHHhh---hcCHHhhcchhHHHHHhhcccCCHHHHHHHHHHHHHHHhhhc--
Confidence            445789999999999999999877766665553   344567778899999999999999999999999998873211  


Q ss_pred             HHHHHHCCCcHHHHHhhcCCChHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhcc
Q 015851          284 KKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQV  363 (399)
Q Consensus       284 ~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~  363 (399)
                       ...+....+..+..+-...+..+|.+..-+|+.++......   ....-.+..+.+-++++-..-|.++..++..-...
T Consensus       402 -~~~Ln~Ellr~~ar~q~d~~~~irtntticlgki~~~l~~~---~R~~vL~~aftralkdpf~paR~a~v~~l~at~~~  477 (690)
T KOG1243|consen  402 -KRNLNGELLRYLARLQPDEHGGIRTNTTICLGKIAPHLAAS---VRKRVLASAFTRALKDPFVPARKAGVLALAATQEY  477 (690)
T ss_pred             -hhhhcHHHHHHHHhhCccccCcccccceeeecccccccchh---hhccccchhhhhhhcCCCCCchhhhhHHHhhcccc
Confidence             12333334444444444455678888888888776442111   12222334455556666666777777777766654


Q ss_pred             CCC-----CcchhHHHHHhhccccH
Q 015851          364 ITV-----SVLPAILIFIIINECQL  383 (399)
Q Consensus       364 ~~~-----~~~~~~~~~~~~~~~~~  383 (399)
                      .+.     +++|.+.-....+++.+
T Consensus       478 ~~~~~va~kIlp~l~pl~vd~e~~v  502 (690)
T KOG1243|consen  478 FDQSEVANKILPSLVPLTVDPEKTV  502 (690)
T ss_pred             cchhhhhhhccccccccccCcccch
Confidence            443     35555544444455444

>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]

Probab=93.01  E-value=1.6  Score=42.15  Aligned_cols=121  Identities=18%  Similarity=0.201  Sum_probs=79.8

Q ss_pred             HHHHHHhhcCChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHHCCCcHHHHHhhcCCChHH
Q 015851          228 AGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSES  307 (399)
Q Consensus       228 ~~~L~~L~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v  307 (399)
                      ...+.......|++ ..+++ |++..++.-+.+++..||..++.+|+.+... -..+...+-.+.+..|.+-+-...+.+
T Consensus        72 ~~f~~Y~~~~dpeg-~~~V~-~~~~h~lRg~eskdk~VR~r~lqila~~~d~-v~eIDe~l~N~L~ekl~~R~~DRE~~V  148 (885)
T COG5218          72 KRFFEYDMPDDPEG-EELVA-GTFYHLLRGTESKDKKVRKRSLQILALLSDV-VREIDEVLANGLLEKLSERLFDREKAV  148 (885)
T ss_pred             HHHHHhcCCCChhh-hHHHH-HHHHHHHhcccCcchhHHHHHHHHHHHHHHh-cchHHHHHHHHHHHHHHHHHhcchHHH
Confidence            33333344334444 33333 4667777777889999999999999998754 333456666778888888888888899


Q ss_pred             HHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHhhC-CCCHHHHHHHHHH
Q 015851          308 QREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQ-SPDVQLREMSAFA  356 (399)
Q Consensus       308 ~~~a~~~L~~l~~~~~~~~~~l~~~g~v~~L~~ll~-~~~~~v~~~a~~~  356 (399)
                      |.+|+.+|+.+-.. ..+.+-    .....|+.+++ +++.+||+.|...
T Consensus       149 R~eAv~~L~~~Qe~-~~neen----~~~n~l~~~vqnDPS~EVRr~alln  193 (885)
T COG5218         149 RREAVKVLCYYQEM-ELNEEN----RIVNLLKDIVQNDPSDEVRRLALLN  193 (885)
T ss_pred             HHHHHHHHHHHHhc-cCChHH----HHHHHHHHHHhcCcHHHHHHHHHHH
Confidence            99999999988632 222111    11335566664 6788888776543

>PF10363 DUF2435: Protein of unknown function (DUF2435)

Probab=93.00  E-value=0.39  Score=34.62  Aligned_cols=72  Identities=19%  Similarity=0.168  Sum_probs=56.6

Q ss_pred             hHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChh
Q 015851          209 IPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPN  282 (399)
Q Consensus       209 i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~  282 (399)
                      +...+..+.++.+.+|..++..|..|.....  .......+++..+...++++++-+--+|..+|..++...+.
T Consensus         5 ~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~--~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p~   76 (92)
T PF10363_consen    5 LQEALSDLNDPLPPVRAHGLVLLRKLIESKS--EPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHPD   76 (92)
T ss_pred             HHHHHHHccCCCcchHHHHHHHHHHHHHcCC--cchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHChH
Confidence            3445667788889999999999999998443  22223356788888999999999999999999999865554

>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]

Probab=92.97  E-value=0.67  Score=45.44  Aligned_cols=143  Identities=17%  Similarity=0.161  Sum_probs=102.8

Q ss_pred             ChHHHHHhhcC----CCHHHHHHHHHHHHHhhcCChhhHHHHHhcCCHHHHHHhhc-CCCHHHHHHHHHHHHHhhcCChh
Q 015851          208 GIPPLVELLEF----TDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLR-SEDSAIHYEAVGVIGNLVHSSPN  282 (399)
Q Consensus       208 ~i~~L~~ll~~----~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~L~~ll~-~~~~~v~~~a~~~L~~l~~~~~~  282 (399)
                      +-|.+.+...+    .++.++..|.-+|..+.--..++    +. .-+|.++..+. +++|.+|.+|.-.++.++.+...
T Consensus       893 F~pvVeE~csn~~~~sd~~lq~aA~l~L~klMClS~~f----c~-ehlpllIt~mek~p~P~IR~NaVvglgD~~vcfN~  967 (1128)
T COG5098         893 FKPVVEEGCSNSSRFSDEELQVAAYLSLYKLMCLSFEF----CS-EHLPLLITSMEKHPIPRIRANAVVGLGDFLVCFNT  967 (1128)
T ss_pred             hhHHHHHHhccccccCCHHHHHHHHHHHHHHHHHhHHH----HH-HHHHHHHHHHhhCCCcceeccceeeccccceehhh
Confidence            34555566555    67899998888877655322222    22 24788998887 78999999999999998765333


Q ss_pred             HHHHHHHCCCcHHHHHhhcCCChHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhc
Q 015851          283 IKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQ  362 (399)
Q Consensus       283 ~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~  362 (399)
                      ....     .-..|.+-|...+..+++.+..++.++...+     .+.-.|-.+.+..++.+++.++...|-..+..++.
T Consensus       968 ~~de-----~t~yLyrrL~De~~~V~rtclmti~fLilag-----q~KVKGqlg~ma~~L~deda~Isdmar~fft~~a~ 1037 (1128)
T COG5098         968 TADE-----HTHYLYRRLGDEDADVRRTCLMTIHFLILAG-----QLKVKGQLGKMALLLTDEDAEISDMARHFFTQIAK 1037 (1128)
T ss_pred             hhHH-----HHHHHHHHhcchhhHHHHHHHHHHHHHHHcc-----ceeeccchhhhHhhccCCcchHHHHHHHHHHHHHh
Confidence            2222     2345666677788899999999999987533     22335677888899999999999999888888886


Q ss_pred             cCC
Q 015851          363 VIT  365 (399)
Q Consensus       363 ~~~  365 (399)
                      ...
T Consensus      1038 KdN 1040 (1128)
T COG5098        1038 KDN 1040 (1128)
T ss_pred             ccc
Confidence            555

>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised

Probab=92.87  E-value=5.6  Score=38.46  Aligned_cols=258  Identities=14%  Similarity=0.113  Sum_probs=128.2

Q ss_pred             hhhHHHHHHHHHHHHHHcCChhHHHHHHhCCChHHHHhcccCCCCcccccCCCcchHHHHHHHHHHHHHhc-CChhhHHH
Q 015851           74 EADRAAAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA-VKPEHQQL  152 (399)
Q Consensus        74 ~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~~~~~a~~~L~~l~-~~~~~~~~  152 (399)
                      +...+.|..++..|..+......+.....    ..+...+......           +--..-+.+|..|+ ++.+.  .
T Consensus        40 ~~p~e~R~~~~~ll~~~i~~~~~~~~~~R----~~fF~~I~~~~~~-----------~d~~~~l~aL~~LT~~Grdi--~  102 (464)
T PF11864_consen   40 NQPSEARRAALELLIACIKRQDSSSGLMR----AEFFRDISDPSND-----------DDFDLRLEALIALTDNGRDI--D  102 (464)
T ss_pred             CCCHHHHHHHHHHHHHHHHccccccHHHH----HHHHHHHhcCCCc-----------hhHHHHHHHHHHHHcCCcCc--h
Confidence            44567888888888888775333111111    1122223322111           11224455566666 33333  2


Q ss_pred             HHhcCcHHHHHHHHhcccc-------------Ccccc------ccHHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHH
Q 015851          153 IVDNGALSHLVNLLKRHMD-------------SNCSR------AVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLV  213 (399)
Q Consensus       153 i~~~~~i~~L~~~L~~~~~-------------~~~~~------~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~  213 (399)
                      ..+.+..+.|...+.....             ....+      .........+..+.|+...+...-..-.-.+.+..++
T Consensus       103 ~~~~~i~~~L~~wl~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~nviKfn~~~l~e~~i~~lv~~i~  182 (464)
T PF11864_consen  103 FFEYEIGPFLLSWLEPSYQAARSARRKAKKSSSSKSKGLSNLDNEESNLSDLLQFLVNVIKFNFNYLDEDEISSLVDQIC  182 (464)
T ss_pred             hcccchHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccchhhhHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHH
Confidence            2456677777777753220             00000      0002334455555555543332111112234455555


Q ss_pred             HhhcC-CCHHHHHHHHHHHHHhhcCChhhHHHHHhcCCHHHHHHhhcC--CCHHHHHHHHHHHHHhhcCChhHHHHHHHC
Q 015851          214 ELLEF-TDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRS--EDSAIHYEAVGVIGNLVHSSPNIKKEVLAA  290 (399)
Q Consensus       214 ~ll~~-~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~L~~ll~~--~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~  290 (399)
                      .+... .++.....++..+..+..+..-.      .+.++.++..|.+  +..++...+-.++.||+.+. ...      
T Consensus       183 ~iC~~Ts~~~di~~~L~vldaii~y~~iP------~~sl~~~i~vLCsi~~~~~l~~~~w~~m~nL~~S~-~g~------  249 (464)
T PF11864_consen  183 TICKSTSSEDDIEACLSVLDAIITYGDIP------SESLSPCIEVLCSIVNSVSLCKPSWRTMRNLLKSH-LGH------  249 (464)
T ss_pred             HHHhccCcHHHHHHHHHHHHHHHHcCcCC------hHHHHHHHHHHhhHhcccccchhHHHHHHHHHcCc-cHH------
Confidence            55433 33444566666666555421111      1223334444432  22366777778889998542 221      


Q ss_pred             CCcHHHHHhhcC------CChHHHHHHHHHHHHhhccChhhH-HHHHhc--CCHHHHHHhhCCCCHHHHHHHHHHHHHhh
Q 015851          291 GALQPVIGLLSS------CCSESQREAALLLGQFAATDSDCK-VHIVQR--GAVRPLIEMLQSPDVQLREMSAFALGRLA  361 (399)
Q Consensus       291 ~~l~~L~~lL~~------~~~~v~~~a~~~L~~l~~~~~~~~-~~l~~~--g~v~~L~~ll~~~~~~v~~~a~~~L~~l~  361 (399)
                      .++..|..+|.+      .+..+...|+..+..+..+..+.. ..+--.  -+++.+...++.+++.+-......+.++-
T Consensus       250 ~~i~~L~~iL~~~~~~~~~~~~~lRGAv~~l~~ll~~~~~~~~~~l~~~~~~vl~sl~~al~~~~~~v~~eIl~~i~~ll  329 (464)
T PF11864_consen  250 SAIRTLCDILRSPDPQNKRDINVLRGAVFFLRMLLWGSGEQGYPSLPFSPSSVLPSLLNALKSNSPRVDYEILLLINRLL  329 (464)
T ss_pred             HHHHHHHHHHcccCccccccHHHHhhHHHHHHHHHhccccCCcceecccHHHHHHHHHHHHhCCCCeehHHHHHHHHHHH
Confidence            246777777732      334566788888888886642222 222222  26778888887766666555555555555

>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes

Probab=92.77  E-value=1.1  Score=39.84  Aligned_cols=157  Identities=17%  Similarity=0.111  Sum_probs=94.9

Q ss_pred             HHHHHHHHHHHcCChhHHHHHHhCC--ChHHHHhcccCCCCcccccCCCcchHHHHHHHHHHHHHhcCChhhHHHHHhcC
Q 015851           80 AKRATHVLAELAKNEEVVNWIVEGG--AVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIVDNG  157 (399)
Q Consensus        80 ~~~a~~~L~~l~~~~~~~~~~~~~g--~l~~L~~lL~~~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~~  157 (399)
                      +.-++..++-++.++.....+...+  +...+..++.......        .+..+.-+++++.|+..++..+..+....
T Consensus        80 ~fP~lDLlRl~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--------~~~~~ml~lR~l~NlF~~~~~~~~~~~~~  151 (268)
T PF08324_consen   80 RFPALDLLRLAALHPPASDLLASEDSGIADLLSTLISSGSSSS--------PPANQMLALRLLANLFSHPPGRQLLLSHF  151 (268)
T ss_dssp             -HHHHHHHHHHCCCHCHHHHHHSTTTH-HHHHHHHHHCCTTTS--------SHHHHHHHHHHHHHHTTSCCCHHHHHCTH
T ss_pred             chhHHhHHHHHHhCccHHHHHhccccchHHHHHHHHHhccCCC--------cHHHHHHHHHHHHHhhCCCccHHHHHhcc
Confidence            5578888988888987777665553  3556666665543221        23678889999999998888888877643


Q ss_pred             cHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhhcCchhH-HHHHhcCChHHHHHhh-cC-CCHHHHHHHHHHHHHh
Q 015851          158 ALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIK-TRVRMEGGIPPLVELL-EF-TDTKVQRAAAGALRTL  234 (399)
Q Consensus       158 ~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~-~~~~~~~~i~~L~~ll-~~-~~~~v~~~a~~~L~~L  234 (399)
                      . ..++..+......... ....++..++..+.|++......+ ..-.....+..+.+.+ .. .+++....++-+|++|
T Consensus       152 ~-~~i~~~~~~~~~~~~~-~~kn~~~A~ATl~~Nlsv~~~~~~~~~~~~~~ll~~i~~~~~~~~~d~Ea~~R~LvAlGtL  229 (268)
T PF08324_consen  152 D-SSILELLSSLLSSLLD-SNKNVRIALATLLLNLSVLLHKNRSDEEWQSELLSSIIEVLSREESDEEALYRLLVALGTL  229 (268)
T ss_dssp             H-TCHHHHCHCCCTTS-H-HHHHHHHHHHHHHHHHHHHHHHCTS-CCHHHHHHHHHHHHCHCCHTSHHHHHHHHHHHHHH
T ss_pred             c-chHHHHHHHHhhcccc-ccHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHH
Confidence            2 1344444333222100 001788889999999984111100 0000112345555533 22 5799999999999999


Q ss_pred             hcCChhhHHHHHh
Q 015851          235 AFKNDENKNQIVE  247 (399)
Q Consensus       235 ~~~~~~~~~~~~~  247 (399)
                      ... +.......+
T Consensus       230 ~~~-~~~~~~~~~  241 (268)
T PF08324_consen  230 LSS-SDSAKQLAK  241 (268)
T ss_dssp             HCC-SHHHHHHCC
T ss_pred             hcc-ChhHHHHHH
Confidence            974 444444444

It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.

>KOG2137 consensus Protein kinase [Signal transduction mechanisms]

Probab=92.75  E-value=11  Score=37.56  Aligned_cols=134  Identities=18%  Similarity=0.195  Sum_probs=91.4

Q ss_pred             hcCChHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhhHHHHHhcCCHHHHHHhh-cCCCHHHHHHHHHHHHHhhcCChhH
Q 015851          205 MEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILML-RSEDSAIHYEAVGVIGNLVHSSPNI  283 (399)
Q Consensus       205 ~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~L~~ll-~~~~~~v~~~a~~~L~~l~~~~~~~  283 (399)
                      ...++|.|...+++.+..++..++..+...+..-+   ..++..-++|.+..+. .+.+..++..++.|++.+...    
T Consensus       387 ~~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD---~~~vk~~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~q~----  459 (700)
T KOG2137|consen  387 KEKILPLLYRSLEDSDVQIQELALQILPTVAESID---VPFVKQAILPRLKNLAFKTTNLYVKVNVLPCLAGLIQR----  459 (700)
T ss_pred             HHHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhcc---HHHHHHHHHHHhhcchhcccchHHHHHHHHHHHHHHHH----
Confidence            35667888888899999999999999998886322   3455556788887764 356789999999999998722    


Q ss_pred             HHHHHHCCCcHHHHHhhcCCChHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHhhCCCC
Q 015851          284 KKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPD  346 (399)
Q Consensus       284 ~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~v~~L~~ll~~~~  346 (399)
                      .....-...+.++....+..++.+......+..++....... ..+....++|.++.+...+.
T Consensus       460 lD~~~v~d~~lpi~~~~~~~dp~iv~~~~~i~~~l~~~~~~g-~ev~~~~VlPlli~ls~~~~  521 (700)
T KOG2137|consen  460 LDKAAVLDELLPILKCIKTRDPAIVMGFLRIYEALALIIYSG-VEVMAENVLPLLIPLSVAPS  521 (700)
T ss_pred             HHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhcccc-eeeehhhhhhhhhhhhhccc
Confidence            122221233445555556778888777777766666443333 45555677888888776544

>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes

Probab=92.71  E-value=1.3  Score=39.33  Aligned_cols=144  Identities=20%  Similarity=0.209  Sum_probs=83.8

Q ss_pred             HHHHHHHHhcCChhhHHHHHhcC--cHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhhcCchhHHHHHhc-C-ChH
Q 015851          135 GSAFALGLLAVKPEHQQLIVDNG--ALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRME-G-GIP  210 (399)
Q Consensus       135 ~a~~~L~~l~~~~~~~~~i~~~~--~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~-~-~i~  210 (399)
                      -+.-.+.-+..++.....+...+  ....+..++........    ...+..+++++.|+..+... +..+... + .+-
T Consensus        82 P~lDLlRl~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~----~~~~ml~lR~l~NlF~~~~~-~~~~~~~~~~~i~  156 (268)
T PF08324_consen   82 PALDLLRLAALHPPASDLLASEDSGIADLLSTLISSGSSSSP----PANQMLALRLLANLFSHPPG-RQLLLSHFDSSIL  156 (268)
T ss_dssp             HHHHHHHHHCCCHCHHHHHHSTTTH-HHHHHHHHHCCTTTSS----HHHHHHHHHHHHHHTTSCCC-HHHHHCTHHTCHH
T ss_pred             hHHhHHHHHHhCccHHHHHhccccchHHHHHHHHHhccCCCc----HHHHHHHHHHHHHhhCCCcc-HHHHHhcccchHH
Confidence            45555555557777766665443  24555666555443211    16778899999999965544 3334333 3 333


Q ss_pred             HHHHhhcCC----CHHHHHHHHHHHHHhhcCChhhH-HHHHhcCCHHHHHHhhc-C-CCHHHHHHHHHHHHHhhcCChhH
Q 015851          211 PLVELLEFT----DTKVQRAAAGALRTLAFKNDENK-NQIVECNALPTLILMLR-S-EDSAIHYEAVGVIGNLVHSSPNI  283 (399)
Q Consensus       211 ~L~~ll~~~----~~~v~~~a~~~L~~L~~~~~~~~-~~~~~~~~~~~L~~ll~-~-~~~~v~~~a~~~L~~l~~~~~~~  283 (399)
                      ..+..+...    +..++..++..+.|++...-... ..-.....+..++..+. . .++++...++.++|++...++..
T Consensus       157 ~~~~~~~~~~~~~~kn~~~A~ATl~~Nlsv~~~~~~~~~~~~~~ll~~i~~~~~~~~~d~Ea~~R~LvAlGtL~~~~~~~  236 (268)
T PF08324_consen  157 ELLSSLLSSLLDSNKNVRIALATLLLNLSVLLHKNRSDEEWQSELLSSIIEVLSREESDEEALYRLLVALGTLLSSSDSA  236 (268)
T ss_dssp             HHCHCCCTTS-HHHHHHHHHHHHHHHHHHHHHHHCTS-CCHHHHHHHHHHHHCHCCHTSHHHHHHHHHHHHHHHCCSHHH
T ss_pred             HHHHHHhhccccccHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHhccChhH
Confidence            333333333    68899999999999986211111 00011113444555332 2 68999999999999999654443

It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.

>PF08167 RIX1: rRNA processing/ribosome biogenesis

Probab=92.49  E-value=1.4  Score=35.91  Aligned_cols=117  Identities=15%  Similarity=0.167  Sum_probs=79.2

Q ss_pred             CHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHHC--CCcHHHHHhhcCCCh-HHHHHHHHHHHHhhcc---Ch
Q 015851          250 ALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAA--GALQPVIGLLSSCCS-ESQREAALLLGQFAAT---DS  323 (399)
Q Consensus       250 ~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~--~~l~~L~~lL~~~~~-~v~~~a~~~L~~l~~~---~~  323 (399)
                      .+..+.++|++++++-|+.++..+..++..++  ...+.++  ..+..++..|+.+++ .+.+.++.+|..+...   .+
T Consensus        26 l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~--~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~~p  103 (165)
T PF08167_consen   26 LVTRINSLLQSKSAYSRWAGLCLLKVTVEQCS--WEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRGKP  103 (165)
T ss_pred             HHHHHHHHhCCCChhhHHHHHHHHHHHHHHhh--HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCC
Confidence            45668889999999999999999998885432  2333333  357888899986554 6677777777777643   34


Q ss_pred             hhHHHHHhc---CCHHHHHHhhCCCCHHHHHHHHHHHHHhhccCCCCcch
Q 015851          324 DCKVHIVQR---GAVRPLIEMLQSPDVQLREMSAFALGRLAQVITVSVLP  370 (399)
Q Consensus       324 ~~~~~l~~~---g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~  370 (399)
                      +..+++...   ++++.+++++++  ......+..+|..+....+.-+-|
T Consensus       104 ~l~Rei~tp~l~~~i~~ll~l~~~--~~~~~~~l~~L~~ll~~~ptt~rp  151 (165)
T PF08167_consen  104 TLTREIATPNLPKFIQSLLQLLQD--SSCPETALDALATLLPHHPTTFRP  151 (165)
T ss_pred             chHHHHhhccHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHHCCccccc
Confidence            544444432   344555555543  567788999999988877764333

>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]

Probab=92.34  E-value=3.8  Score=39.68  Aligned_cols=128  Identities=16%  Similarity=0.123  Sum_probs=83.5

Q ss_pred             HHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhhHHHHHhcCCHHHHHHhhc
Q 015851          180 SVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLR  259 (399)
Q Consensus       180 ~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~L~~ll~  259 (399)
                      .+.......+.+.-.++|.... ++ .|.+..++.-+.+++..+|...++.|+.++. .-......+-.|.+..|.+-+-
T Consensus        66 Ril~fl~~f~~Y~~~~dpeg~~-~V-~~~~~h~lRg~eskdk~VR~r~lqila~~~d-~v~eIDe~l~N~L~ekl~~R~~  142 (885)
T COG5218          66 RILSFLKRFFEYDMPDDPEGEE-LV-AGTFYHLLRGTESKDKKVRKRSLQILALLSD-VVREIDEVLANGLLEKLSERLF  142 (885)
T ss_pred             HHHHHHHHHHHhcCCCChhhhH-HH-HHHHHHHHhcccCcchhHHHHHHHHHHHHHH-hcchHHHHHHHHHHHHHHHHHh
Confidence            3444444444444445555433 22 4567777788888999999999999999886 3444445566677777877777


Q ss_pred             CCCHHHHHHHHHHHHHhhcCChhHHHHHHHCCCcHHHHHhhc-CCChHHHHHHHHHH
Q 015851          260 SEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLS-SCCSESQREAALLL  315 (399)
Q Consensus       260 ~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~-~~~~~v~~~a~~~L  315 (399)
                      +..+.||..|+.+|+.+-....+....     ....|..+++ .++.++|..|+.-|
T Consensus       143 DRE~~VR~eAv~~L~~~Qe~~~neen~-----~~n~l~~~vqnDPS~EVRr~allni  194 (885)
T COG5218         143 DREKAVRREAVKVLCYYQEMELNEENR-----IVNLLKDIVQNDPSDEVRRLALLNI  194 (885)
T ss_pred             cchHHHHHHHHHHHHHHHhccCChHHH-----HHHHHHHHHhcCcHHHHHHHHHHHe
Confidence            888999999999999986422221111     2345666665 45668887765543

>KOG1243 consensus Protein kinase [General function prediction only]

Probab=92.30  E-value=3.3  Score=40.90  Aligned_cols=189  Identities=13%  Similarity=0.113  Sum_probs=125.9

Q ss_pred             HhcCcHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHH
Q 015851          154 VDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRT  233 (399)
Q Consensus       154 ~~~~~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~  233 (399)
                      ...++++.+++++...+.        .++...+.-+-....   .....+....++|.+..-+.+.++.+|...+.++..
T Consensus       327 yq~~i~p~l~kLF~~~Dr--------~iR~~LL~~i~~~i~---~Lt~~~~~d~I~phv~~G~~DTn~~Lre~Tlksm~~  395 (690)
T KOG1243|consen  327 YQVRIIPVLLKLFKSPDR--------QIRLLLLQYIEKYID---HLTKQILNDQIFPHVALGFLDTNATLREQTLKSMAV  395 (690)
T ss_pred             cccchhhhHHHHhcCcch--------HHHHHHHHhHHHHhh---hcCHHhhcchhHHHHHhhcccCCHHHHHHHHHHHHH
Confidence            345688999999988776        666555555444443   223356778889999999999999999999999998


Q ss_pred             hhcCChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHHCCCcHHHHHhhcCCChHHHHHHHH
Q 015851          234 LAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAAL  313 (399)
Q Consensus       234 L~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~  313 (399)
                      |+..  =+.. ......+..+.++-.+.+..+|.+..-+|+.++......   ....-....+..-+.++-...|..+.+
T Consensus       396 La~k--L~~~-~Ln~Ellr~~ar~q~d~~~~irtntticlgki~~~l~~~---~R~~vL~~aftralkdpf~paR~a~v~  469 (690)
T KOG1243|consen  396 LAPK--LSKR-NLNGELLRYLARLQPDEHGGIRTNTTICLGKIAPHLAAS---VRKRVLASAFTRALKDPFVPARKAGVL  469 (690)
T ss_pred             HHhh--hchh-hhcHHHHHHHHhhCccccCcccccceeeecccccccchh---hhccccchhhhhhhcCCCCCchhhhhH
Confidence            8852  1111 333334555555555667789999999999987542221   122223455666677776677888888


Q ss_pred             HHHHhhccChhhHHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhc
Q 015851          314 LLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQ  362 (399)
Q Consensus       314 ~L~~l~~~~~~~~~~l~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~  362 (399)
                      ++....... +...  +...++|.+..+..+++..+|..|-.++..+-.
T Consensus       470 ~l~at~~~~-~~~~--va~kIlp~l~pl~vd~e~~vr~~a~~~i~~fl~  515 (690)
T KOG1243|consen  470 ALAATQEYF-DQSE--VANKILPSLVPLTVDPEKTVRDTAEKAIRQFLE  515 (690)
T ss_pred             HHhhccccc-chhh--hhhhccccccccccCcccchhhHHHHHHHHHHh
Confidence            887665432 2211  234467777777788888888888877776553

>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]

Probab=92.25  E-value=9.3  Score=37.01  Aligned_cols=129  Identities=22%  Similarity=0.291  Sum_probs=83.9

Q ss_pred             HHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHHCCCcHHHHHh-hcCCChHHHHHHHHHHHHhhccChhhHHHHHh
Q 015851          253 TLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGL-LSSCCSESQREAALLLGQFAATDSDCKVHIVQ  331 (399)
Q Consensus       253 ~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~l-L~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~  331 (399)
                      .+-.++.+.++-+|.....+++---.+..       ..+++..+++. .+..+.++++.|+.+|+-+|..+++.      
T Consensus       520 ~I~ell~d~ds~lRy~G~fs~alAy~GTg-------n~~vv~~lLh~avsD~nDDVrRAAViAlGfvc~~D~~~------  586 (926)
T COG5116         520 YINELLYDKDSILRYNGVFSLALAYVGTG-------NLGVVSTLLHYAVSDGNDDVRRAAVIALGFVCCDDRDL------  586 (926)
T ss_pred             HHHHHhcCchHHhhhccHHHHHHHHhcCC-------cchhHhhhheeecccCchHHHHHHHHheeeeEecCcch------
Confidence            34456677778888777766654322222       13567788887 67788899999999999988654433      


Q ss_pred             cCCHHHHHHhh-CCCCHHHHHHHHHHHHHhhccCCCCcchhHHHHHhhccc--cHHHHHHHHhhhHhhhc
Q 015851          332 RGAVRPLIEML-QSPDVQLREMSAFALGRLAQVITVSVLPAILIFIIINEC--QLEVLAFVLSEMVLLFC  398 (399)
Q Consensus       332 ~g~v~~L~~ll-~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~  398 (399)
                         ++-.+++| .+.++.||...+.+|+-.|..+..+.---++.- ++.+.  .++-.+.+-..|.++.|
T Consensus       587 ---lv~tvelLs~shN~hVR~g~AvaLGiacag~G~~~a~diL~~-L~~D~~dfVRQ~AmIa~~mIl~Q~  652 (926)
T COG5116         587 ---LVGTVELLSESHNFHVRAGVAVALGIACAGTGDKVATDILEA-LMYDTNDFVRQSAMIAVGMILMQC  652 (926)
T ss_pred             ---hhHHHHHhhhccchhhhhhhHHHhhhhhcCCccHHHHHHHHH-HhhCcHHHHHHHHHHHHHHHHhhc
Confidence               44455555 467899999999999999988876533222222 23332  33444444456666665

>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []

Probab=92.17  E-value=7.4  Score=39.24  Aligned_cols=200  Identities=21%  Similarity=0.199  Sum_probs=109.2

Q ss_pred             cHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhhcC----CCHHHHHHHHHHHHH
Q 015851          158 ALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEF----TDTKVQRAAAGALRT  233 (399)
Q Consensus       158 ~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~----~~~~v~~~a~~~L~~  233 (399)
                      ++..+.+++....-..         ..+...|..+........     ...+..+..++++    .++.++..|+-+++.
T Consensus       396 av~~i~~~I~~~~~~~---------~ea~~~l~~l~~~~~~Pt-----~e~l~~l~~L~~~~~~~~~~~l~~ta~L~~~~  461 (618)
T PF01347_consen  396 AVKFIKDLIKSKKLTD---------DEAAQLLASLPFHVRRPT-----EELLKELFELAKSPKVKNSPYLRETALLSLGS  461 (618)
T ss_dssp             HHHHHHHHHHTT-S-H---------HHHHHHHHHHHHT----------HHHHHHHHHHHT-HHHHT-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCCCH---------HHHHHHHHHHHhhcCCCC-----HHHHHHHHHHHhCccccCChhHHHHHHHHHHH
Confidence            5667777777644321         224455555553221111     1234455666654    356788888888888


Q ss_pred             hhcCChhh---------HHHHHhcCCHHHHHHhhc----CCCHHHHHHHHHHHHHhhcCChhHHHHHHHCCCcHHHHHhh
Q 015851          234 LAFKNDEN---------KNQIVECNALPTLILMLR----SEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLL  300 (399)
Q Consensus       234 L~~~~~~~---------~~~~~~~~~~~~L~~ll~----~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL  300 (399)
                      +....-..         ....+....++.+...+.    ..+.+-+..++.+|+|+..  +.         .++.+..++
T Consensus       462 lv~~~c~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~g~--~~---------~i~~l~~~i  530 (618)
T PF01347_consen  462 LVHKYCVNSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVYLKALGNLGH--PE---------SIPVLLPYI  530 (618)
T ss_dssp             HHHHHHTT-----------SS--GGGTHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT---GG---------GHHHHHTTS
T ss_pred             HhCceeecccccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHHHHHhhccCC--ch---------hhHHHHhHh
Confidence            87521111         111222345666666555    4567888899999999952  33         467777777


Q ss_pred             cCC---ChHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHhhC--CCCHHHHHHHHHHHHHhhccCCCCcchhHHHH
Q 015851          301 SSC---CSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQ--SPDVQLREMSAFALGRLAQVITVSVLPAILIF  375 (399)
Q Consensus       301 ~~~---~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~v~~L~~ll~--~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~  375 (399)
                      ...   +..+|..|+++|..++...++..        .+.|+.+..  ..++++|.+|..+|..  .+++...+..+.. 
T Consensus       531 ~~~~~~~~~~R~~Ai~Alr~~~~~~~~~v--------~~~l~~I~~n~~e~~EvRiaA~~~lm~--~~P~~~~l~~i~~-  599 (618)
T PF01347_consen  531 EGKEEVPHFIRVAAIQALRRLAKHCPEKV--------REILLPIFMNTTEDPEVRIAAYLILMR--CNPSPSVLQRIAQ-  599 (618)
T ss_dssp             TTSS-S-HHHHHHHHHTTTTGGGT-HHHH--------HHHHHHHHH-TTS-HHHHHHHHHHHHH--T---HHHHHHHHH-
T ss_pred             hhccccchHHHHHHHHHHHHHhhcCcHHH--------HHHHHHHhcCCCCChhHHHHHHHHHHh--cCCCHHHHHHHHH-
Confidence            655   56899999999998865444322        345566664  4578898888766554  2233223333322 


Q ss_pred             HhhccccHHHHHHHHhhh
Q 015851          376 IIINECQLEVLAFVLSEM  393 (399)
Q Consensus       376 ~~~~~~~~~~~~~~l~~~  393 (399)
                      .+-.|...+|..++.+.|
T Consensus       600 ~l~~E~~~QV~sfv~S~L  617 (618)
T PF01347_consen  600 SLWNEPSNQVASFVYSHL  617 (618)
T ss_dssp             HHTT-S-HHHHHHHHHHH
T ss_pred             HHhhCchHHHHHHHHHhc
Confidence            234566678888877654

Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.

>KOG1566 consensus Conserved protein Mo25 [Function unknown]

Probab=92.15  E-value=8.3  Score=34.41  Aligned_cols=206  Identities=15%  Similarity=0.125  Sum_probs=142.9

Q ss_pred             HHHHhcCcHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhhcCchhHH-----HHHhcCChHHHHHhhcCCCHHHHH
Q 015851          151 QLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKT-----RVRMEGGIPPLVELLEFTDTKVQR  225 (399)
Q Consensus       151 ~~i~~~~~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~-----~~~~~~~i~~L~~ll~~~~~~v~~  225 (399)
                      +.+.++|.+..+++.+....-        +-+..++.+..++-....+.+.     .......+..++.--.. .+++.-
T Consensus        73 qef~~~~~l~~lI~~l~~l~f--------E~rkD~~~ifnnllr~qvgtr~~tv~Yl~t~~e~~~~lv~~~~~-~~~iaL  143 (342)
T KOG1566|consen   73 QEFYNADVLSLLIQHLPKLEF--------ESRKDVLQIFNNLLRRQVGTRSPTVEYLETNPEILDNLVKGYEN-TPEIAL  143 (342)
T ss_pred             HHHHhCCchHHHHHhhhcccc--------hhhhHHHHHHHHHHHhhcCCcchHHHHHHhCHHHHHHHHhhhcc-chHHHH
Confidence            456678899999999988766        6677788888887753322221     11222344444444111 366666


Q ss_pred             HHHHHHHHhhcCChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHHCCC----cHHHHHhhc
Q 015851          226 AAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGA----LQPVIGLLS  301 (399)
Q Consensus       226 ~a~~~L~~L~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~----l~~L~~lL~  301 (399)
                      .+...|..... ++...+.+....-+...-..+..+.-++...|..+...+.........++...+.    .+.--.++.
T Consensus       144 ~cg~mlrEcir-he~LakiiL~s~~~~~FF~~vq~p~FdiasdA~~tfK~llt~Hk~~vaEfl~~n~d~ff~e~~~~Ll~  222 (342)
T KOG1566|consen  144 TCGNMLRECIR-HEFLAKIILESTNFEKFFLYVQLPNFDIASDAFSTFKELLTRHKSVVAEFLIRNYDNFFAEVYEKLLR  222 (342)
T ss_pred             HHHHHHHHHHh-hHHHHHHHHcchhHHHHHHHHhccchHHHHHHHHHHHHHHHHhHHHHHHHHHhChhhhHHHHHHHHhc
Confidence            66666666665 5666777777777888888888887788888888888877655555566665543    333556788


Q ss_pred             CCChHHHHHHHHHHHHhhccCh---hhHHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhccCCC
Q 015851          302 SCCSESQREAALLLGQFAATDS---DCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQVITV  366 (399)
Q Consensus       302 ~~~~~v~~~a~~~L~~l~~~~~---~~~~~l~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~  366 (399)
                      +++.-++..+...++.+.-..+   ...+.+.....+..+..+|++++..++-.|-..-+.+..+...
T Consensus       223 s~Nyvtkrqs~kllg~llldr~N~~~M~kYiss~enLKlmM~llrdkskniQ~eAFhvFKvfvAnpnK  290 (342)
T KOG1566|consen  223 SENYVTKRQSLKLLGELLLDRSNSAVMTKYISSPENLKLMMNLLRDKSKNIQLEAFHVFKVFVANPNK  290 (342)
T ss_pred             ccceehHHHHHHhHHHHHhCCCcHHHHHHHhcCHHHHHHHHHHhhCccccchHHHHHHHHHHhcCCCC
Confidence            9999999999999998875432   2333444456789999999999999999999999888877664

>KOG2137 consensus Protein kinase [Signal transduction mechanisms]

Probab=91.68  E-value=5.6  Score=39.51  Aligned_cols=114  Identities=16%  Similarity=0.132  Sum_probs=84.7

Q ss_pred             HhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHHCCCcHHHHHhh-cCCChHHHHHHHHHHHHhhccChh
Q 015851          246 VECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLL-SSCCSESQREAALLLGQFAATDSD  324 (399)
Q Consensus       246 ~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL-~~~~~~v~~~a~~~L~~l~~~~~~  324 (399)
                      +...++|.|...+++.+..++..++..+..++..-+   ...+..-++|.+..+. .+.+..++.+++.|+..+..  .-
T Consensus       386 ~~~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD---~~~vk~~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~q--~l  460 (700)
T KOG2137|consen  386 VKEKILPLLYRSLEDSDVQIQELALQILPTVAESID---VPFVKQAILPRLKNLAFKTTNLYVKVNVLPCLAGLIQ--RL  460 (700)
T ss_pred             HHHHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhcc---HHHHHHHHHHHhhcchhcccchHHHHHHHHHHHHHHH--HH
Confidence            344578889999999999999999999999985433   3455566778777773 46777999999999999872  11


Q ss_pred             hHHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhccCCC
Q 015851          325 CKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQVITV  366 (399)
Q Consensus       325 ~~~~l~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~  366 (399)
                      .+..+.+  .+.++.+..+..++.+......+..++.-..+.
T Consensus       461 D~~~v~d--~~lpi~~~~~~~dp~iv~~~~~i~~~l~~~~~~  500 (700)
T KOG2137|consen  461 DKAAVLD--ELLPILKCIKTRDPAIVMGFLRIYEALALIIYS  500 (700)
T ss_pred             HHHHhHH--HHHHHHHHhcCCCcHHHHHHHHHHHHHHhhccc
Confidence            2222233  366677777788999999999998888877776

>KOG1788 consensus Uncharacterized conserved protein [Function unknown]

Probab=91.65  E-value=12  Score=39.17  Aligned_cols=260  Identities=21%  Similarity=0.156  Sum_probs=152.5

Q ss_pred             HHHHHHHcCC-hhHHHHHHhCCChHHHHhcccCCCCcccccCCCcchHHHHHHHHHHHHHhc-CChhhHHHHHhcCcHHH
Q 015851           84 THVLAELAKN-EEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA-VKPEHQQLIVDNGALSH  161 (399)
Q Consensus        84 ~~~L~~l~~~-~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~~~~~a~~~L~~l~-~~~~~~~~i~~~~~i~~  161 (399)
                      ..+|..+..+ .++...|.+..++..++.++-++              +.|...++++..|- .+|.-.    ....+-.
T Consensus       663 wDcLisllKnnteNqklFreanGvklilpflind--------------ehRSslLrivscLitvdpkqv----hhqelma  724 (2799)
T KOG1788|consen  663 WDCLISLLKNNTENQKLFREANGVKLILPFLIND--------------EHRSSLLRIVSCLITVDPKQV----HHQELMA  724 (2799)
T ss_pred             HHHHHHHHhccchhhHHHHhhcCceEEEEeeech--------------HHHHHHHHHHHHHhccCcccc----cHHHHHH
Confidence            5677787775 88888999999999999888432              44555666666665 444311    1123556


Q ss_pred             HHHHHhccccC----ccccccHHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhhcC----------CCHHHHHHH
Q 015851          162 LVNLLKRHMDS----NCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEF----------TDTKVQRAA  227 (399)
Q Consensus       162 L~~~L~~~~~~----~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~----------~~~~v~~~a  227 (399)
                      ++..|++.--.    ...+-...+....+++++.+...+-..+..+.+.+++..|...|..          ++..+-...
T Consensus       725 lVdtLksgmvt~IsgeqyklhfsllcdlmGalwrivgvngsaqrvFgeatGFslLlttLhtfqgftelhdesDlcvyikl  804 (2799)
T KOG1788|consen  725 LVDTLKSGMVTRISGEQYKLHFSLLCDLMGALWRIVGVNGSAQRVFGEATGFSLLLTTLHTFQGFTELHDESDLCVYIKL  804 (2799)
T ss_pred             HHHHHHhcceeccchhHHHHHHHHHHHHHHHHHHHHccCchheeehhccccHHHHHHHHHHhccchhcCCchhhhhHHHH
Confidence            66777663211    1111112566777888888887777778888889998888776632          122222222


Q ss_pred             HHHH---HHhhc-CChhhHHHHHhcCCHHHHHHhhcC--------------------------CCHHHHHHHHHHHHHhh
Q 015851          228 AGAL---RTLAF-KNDENKNQIVECNALPTLILMLRS--------------------------EDSAIHYEAVGVIGNLV  277 (399)
Q Consensus       228 ~~~L---~~L~~-~~~~~~~~~~~~~~~~~L~~ll~~--------------------------~~~~v~~~a~~~L~~l~  277 (399)
                      ...|   ..++. .++.++..+...=..+.+..+|..                          ++-.--..||..+-.+-
T Consensus       805 fkilFrlfTlavcenasNrmklhtvITsqtftsLLresgllcvnler~viqlllElalevlvppfLtSEsaAcaeVfele  884 (2799)
T KOG1788|consen  805 FKILFRLFTLAVCENASNRMKLHTVITSQTFTSLLRESGLLCVNLERHVIQLLLELALEVLVPPFLTSESAACAEVFELE  884 (2799)
T ss_pred             HHHHHHHHHHHHhhcchhhhheeeeeeHHHHHHHHHHhccceecchHHHHHHHHHHHHHhhCCchhhhhHHHHHHHhhcc
Confidence            2222   22221 133333322221112222222221                          11111122222222111


Q ss_pred             ----c-CC-----hhHHHHHHHCCCcHHHHHhhcCCChHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHhhC---C
Q 015851          278 ----H-SS-----PNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQ---S  344 (399)
Q Consensus       278 ----~-~~-----~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~v~~L~~ll~---~  344 (399)
                          . +.     ...++.+...|++..++..+-...+..+.+-...+..++..++.+...+...|+++.|+.++.   +
T Consensus       885 dnifavntPsGqfnpdk~~iynagavRvlirslLlnypK~qlefl~lleSlaRaspfnaelltS~gcvellleIiypfls  964 (2799)
T KOG1788|consen  885 DNIFAVNTPSGQFNPDKQKIYNAGAVRVLIRSLLLNYPKLQLEFLNLLESLARASPFNAELLTSAGCVELLLEIIYPFLS  964 (2799)
T ss_pred             cceeeeccCCCCcCchHhhhcccchhHHHHHHHHhhChHHHHHHHHHHHHHhhcCCCchhhhhcccHHHHHHHHhhhhhc
Confidence                0 00     123467788899999999988888899999999999999888889888888999999999884   4


Q ss_pred             CCHHHHHHHHHHHHHhh
Q 015851          345 PDVQLREMSAFALGRLA  361 (399)
Q Consensus       345 ~~~~v~~~a~~~L~~l~  361 (399)
                      ++......+..++..++
T Consensus       965 gsspfLshalkIvemLg  981 (2799)
T KOG1788|consen  965 GSSPFLSHALKIVEMLG  981 (2799)
T ss_pred             CCchHhhccHHHHHHHh
Confidence            44445555555555554

>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised

Probab=91.60  E-value=0.43  Score=40.60  Aligned_cols=85  Identities=21%  Similarity=0.199  Sum_probs=62.2

Q ss_pred             HHHHHHHHHHHHhcCChhhHHHHHhcC-------cHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhhcCchhH-HH
Q 015851          131 EVEKGSAFALGLLAVKPEHQQLIVDNG-------ALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIK-TR  202 (399)
Q Consensus       131 ~~~~~a~~~L~~l~~~~~~~~~i~~~~-------~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~-~~  202 (399)
                      .-|+.|+.+|..|+....|.+.+...+       .+..|++++....+.       -.++.+...|.+|+..+.... ..
T Consensus       139 SPqrlaLEaLcKLsV~e~NVDliLaTpp~sRlE~l~~~L~r~l~~~e~~-------v~REfAvvlL~~La~~~~~~~r~i  211 (257)
T PF12031_consen  139 SPQRLALEALCKLSVIENNVDLILATPPFSRLERLFHTLVRLLGMREDQ-------VCREFAVVLLSNLAQGDEAAARAI  211 (257)
T ss_pred             CHHHHHHHHHHHhheeccCcceeeeCCCHHHHHHHHHHHHHHhccccch-------hHHHHHHHHHHHHhcccHHHHHHH
Confidence            457899999999996666666555443       445566666655543       788999999999998776655 44


Q ss_pred             HHhcCChHHHHHhhcCCCHH
Q 015851          203 VRMEGGIPPLVELLEFTDTK  222 (399)
Q Consensus       203 ~~~~~~i~~L~~ll~~~~~~  222 (399)
                      ..+.+.|..|+.++++.+..
T Consensus       212 A~q~~~i~~Li~FiE~a~~~  231 (257)
T PF12031_consen  212 AMQKPCISHLIAFIEDAEQN  231 (257)
T ss_pred             HHhhchHHHHHHHHHHHHHH
Confidence            55678999999998875543

This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.

>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length

Probab=91.33  E-value=1.6  Score=35.26  Aligned_cols=144  Identities=12%  Similarity=0.136  Sum_probs=82.4

Q ss_pred             ChHHHHhcccCCCCcccccCCCcchHHHHHHHHHHHHHhc-CChhhHHHHHhcCcHHHHHHHHhccccCccccccHHHHH
Q 015851          105 AVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIR  183 (399)
Q Consensus       105 ~l~~L~~lL~~~~~~~~~~~~~~~~~~~~~~a~~~L~~l~-~~~~~~~~i~~~~~i~~L~~~L~~~~~~~~~~~~~~~~~  183 (399)
                      .++.|+++|+.+..           +.+|+.+.++|+.|. -+|--.+.+....  +      .....+...    ....
T Consensus        11 LL~~L~~iLk~e~s-----------~~iR~E~lr~lGilGALDP~~~k~~~~~~--~------~~~~~~~~~----~~~~   67 (160)
T PF11865_consen   11 LLDILLNILKTEQS-----------QSIRREALRVLGILGALDPYKHKSIQKSL--D------SKSSENSND----ESTD   67 (160)
T ss_pred             HHHHHHHHHHhCCC-----------HHHHHHHHHHhhhccccCcHHHhcccccC--C------ccccccccc----cchh
Confidence            46778888887743           389999999999998 5553333221111  1      000000000    1111


Q ss_pred             HHHHHHHHHhhcCchhHHHHHhcCChHHHHHhhcCCC-HHHHHHHHHHHHHhhcCChhhHHHHHhcCCHHHHHHhhcCCC
Q 015851          184 RAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTD-TKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSED  262 (399)
Q Consensus       184 ~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~-~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~L~~ll~~~~  262 (399)
                      ...   .+.  ......+......++..|+..|++++ ..-+..+..++.++.......+..+.. .++|.++..++..+
T Consensus        68 ~~l---~~~--~~~~~~ee~y~~vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~cv~~L~-~viP~~l~~i~~~~  141 (160)
T PF11865_consen   68 ISL---PMM--GISPSSEEYYPTVVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKCVPYLP-QVIPIFLRVIRTCP  141 (160)
T ss_pred             hHH---hhc--cCCCchHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCchhHHH-HHhHHHHHHHHhCC
Confidence            111   111  11111223445567888999998877 445566778887777532222333333 47899999998777


Q ss_pred             HHHHHHHHHHHHHhh
Q 015851          263 SAIHYEAVGVIGNLV  277 (399)
Q Consensus       263 ~~v~~~a~~~L~~l~  277 (399)
                      ...++....-|+.|.
T Consensus       142 ~~~~e~~~~qL~~lv  156 (160)
T PF11865_consen  142 DSLREFYFQQLADLV  156 (160)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            788887777777664

It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].

>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown]

Probab=90.93  E-value=15  Score=34.94  Aligned_cols=125  Identities=11%  Similarity=0.147  Sum_probs=84.8

Q ss_pred             HHHHHHHHHHhcCC----hhhHHHHHhcCcHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhhcCchhHHHHHhcCC
Q 015851          133 EKGSAFALGLLAVK----PEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGG  208 (399)
Q Consensus       133 ~~~a~~~L~~l~~~----~~~~~~i~~~~~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~  208 (399)
                      |-.|+-....+..+    ..++..+.++-+.+.+-+++...+.+..+.+. -.+..++.+|...|+. ++....--.-..
T Consensus        28 ~fAaLllVTK~vK~~Di~a~~kk~vfeAVGf~Fl~rLl~tk~~p~dcpd~-Vy~~i~itvLacFC~~-pElAsh~~~v~~  105 (698)
T KOG2611|consen   28 RFAALLLVTKFVKNDDIVALNKKLVFEAVGFHFLDRLLRTKSGPGDCPDD-VYLQISITVLACFCRV-PELASHEEMVSR  105 (698)
T ss_pred             HHHHHHHHHHHhcccchhhhhhhhHHHHhccchHHHHhhcCCCCCCCcHH-HHHHHHHHHHHHHhCC-hhhccCHHHHHh
Confidence            44566666666633    34566788887888888888776554444331 4556678888888853 332211112245


Q ss_pred             hHHHHHhhcCC-C------HHHHHHHHHHHHHhhcCChhhHHHHHhcCCHHHHHHhhcC
Q 015851          209 IPPLVELLEFT-D------TKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRS  260 (399)
Q Consensus       209 i~~L~~ll~~~-~------~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~L~~ll~~  260 (399)
                      ||.+.+.++.. +      ..+...+..+|..++. .+.+...++..|+++.+.++-.-
T Consensus       106 IP~llev~~~~~d~d~e~~~~m~~d~Y~cL~~Va~-~e~G~~~Lia~G~~~~~~Q~y~~  163 (698)
T KOG2611|consen  106 IPLLLEVMSKGIDTDYEDNLIMLEDCYECLYLVAT-AEAGLMTLIASGGLRVIAQMYEL  163 (698)
T ss_pred             hhHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHhc-CCchhHHHHhcCchHHHHHHHhC
Confidence            88888888642 2      2377888999999998 58888999999999999987654

>KOG1566 consensus Conserved protein Mo25 [Function unknown]

Probab=90.88  E-value=11  Score=33.57  Aligned_cols=202  Identities=14%  Similarity=0.173  Sum_probs=137.4

Q ss_pred             HHHHhCCChHHHHhcccCCCCcccccCCCcchHHHHHHHHHHHHHhc-CChhhH----HHHHh-cCcHHHHHHHHhcccc
Q 015851           98 NWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA-VKPEHQ----QLIVD-NGALSHLVNLLKRHMD  171 (399)
Q Consensus        98 ~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~~~~~a~~~L~~l~-~~~~~~----~~i~~-~~~i~~L~~~L~~~~~  171 (399)
                      ..+.+.|.+..+++-+..-+-            +.+..++.+..++- .....+    +.+.. ...+..|   +.. ..
T Consensus        73 qef~~~~~l~~lI~~l~~l~f------------E~rkD~~~ifnnllr~qvgtr~~tv~Yl~t~~e~~~~l---v~~-~~  136 (342)
T KOG1566|consen   73 QEFYNADVLSLLIQHLPKLEF------------ESRKDVLQIFNNLLRRQVGTRSPTVEYLETNPEILDNL---VKG-YE  136 (342)
T ss_pred             HHHHhCCchHHHHHhhhcccc------------hhhhHHHHHHHHHHHhhcCCcchHHHHHHhCHHHHHHH---Hhh-hc
Confidence            456688999999998887665            67778888888887 332222    22221 2223333   332 22


Q ss_pred             CccccccHHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhhHHHHHhcCC-
Q 015851          172 SNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNA-  250 (399)
Q Consensus       172 ~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~-  250 (399)
                      ...     ++...+-..|..+. ..+.....+....-+......+..++-++...|..+...+...+.....++..... 
T Consensus       137 ~~~-----~iaL~cg~mlrEci-rhe~LakiiL~s~~~~~FF~~vq~p~FdiasdA~~tfK~llt~Hk~~vaEfl~~n~d  210 (342)
T KOG1566|consen  137 NTP-----EIALTCGNMLRECI-RHEFLAKIILESTNFEKFFLYVQLPNFDIASDAFSTFKELLTRHKSVVAEFLIRNYD  210 (342)
T ss_pred             cch-----HHHHHHHHHHHHHH-hhHHHHHHHHcchhHHHHHHHHhccchHHHHHHHHHHHHHHHHhHHHHHHHHHhChh
Confidence            100     45544444455544 44555556777777888888888888899999999999988866666666665333 


Q ss_pred             ---HHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhH---HHHHHHCCCcHHHHHhhcCCChHHHHHHHHHHHHhhcc
Q 015851          251 ---LPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNI---KKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAAT  321 (399)
Q Consensus       251 ---~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~---~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~  321 (399)
                         .+..-.++.+++--++..+..+++.+-.+.++.   .+.+.+...+..++.+|+.++..++.+|--+-.-+.+.
T Consensus       211 ~ff~e~~~~Ll~s~Nyvtkrqs~kllg~llldr~N~~~M~kYiss~enLKlmM~llrdkskniQ~eAFhvFKvfvAn  287 (342)
T KOG1566|consen  211 NFFAEVYEKLLRSENYVTKRQSLKLLGELLLDRSNSAVMTKYISSPENLKLMMNLLRDKSKNIQLEAFHVFKVFVAN  287 (342)
T ss_pred             hhHHHHHHHHhcccceehHHHHHHhHHHHHhCCCcHHHHHHHhcCHHHHHHHHHHhhCccccchHHHHHHHHHHhcC
Confidence               344667888888889999999999987654433   22333446788999999999999999999888877754

>PF13251 DUF4042: Domain of unknown function (DUF4042)

Probab=90.70  E-value=2.4  Score=34.99  Aligned_cols=109  Identities=24%  Similarity=0.230  Sum_probs=74.1

Q ss_pred             HHHHHhhcCCCHHHHHHHHHHHHHhhcCChhhHHHHHhcC-----CH--------------HHHHHhhcC-CCHHHHHHH
Q 015851          210 PPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECN-----AL--------------PTLILMLRS-EDSAIHYEA  269 (399)
Q Consensus       210 ~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~-----~~--------------~~L~~ll~~-~~~~v~~~a  269 (399)
                      +.+.-++.++++++|..|+.++..|..+...+-...-+.+     +.              ..|+..|+. .+..+....
T Consensus        43 sLlt~il~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae~~~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q~  122 (182)
T PF13251_consen   43 SLLTCILKDPSPKVRAAAASALAALLEGSKPFLAQAEESKGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLTQL  122 (182)
T ss_pred             chhHHHHcCCchhHHHHHHHHHHHHHHccHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHHHH
Confidence            4455556788999999999999999986544433333211     11              114444443 467788899


Q ss_pred             HHHHHHhhcCChhHHHHHHHCCCc----HHHHHhhcCCChHHHHHHHHHHHHhhcc
Q 015851          270 VGVIGNLVHSSPNIKKEVLAAGAL----QPVIGLLSSCCSESQREAALLLGQFAAT  321 (399)
Q Consensus       270 ~~~L~~l~~~~~~~~~~~~~~~~l----~~L~~lL~~~~~~v~~~a~~~L~~l~~~  321 (399)
                      +.++..+....+..+-   ..|.+    ..+..++.+.++.++..+..+++.+.+.
T Consensus       123 lK~la~Lv~~tPY~rL---~~~ll~~~v~~v~~~l~~~d~~v~v~~l~~~~~l~s~  175 (182)
T PF13251_consen  123 LKCLAVLVQATPYHRL---PPGLLTEVVTQVRPLLRHRDPNVRVAALSCLGALLSV  175 (182)
T ss_pred             HHHHHHHHccCChhhc---CHhHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcC
Confidence            9999999877665432   23444    4445556788889999999999988754

>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown]

Probab=90.51  E-value=16  Score=34.79  Aligned_cols=134  Identities=12%  Similarity=0.111  Sum_probs=89.1

Q ss_pred             HHHHHHHHHHHHHcCC----hhHHHHHHhCCChHHHHhcccCCCCcccccCCCcchHHHHHHHHHHHHHhcCChhhHHHH
Q 015851           78 AAAKRATHVLAELAKN----EEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLI  153 (399)
Q Consensus        78 ~~~~~a~~~L~~l~~~----~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~i  153 (399)
                      +.|..|+-...+.+.+    ..+++.+++.-|.+.+-.+|.+.+..  ++.+   +.-.+..+..+|.-+|..|+....-
T Consensus        26 ~e~fAaLllVTK~vK~~Di~a~~kk~vfeAVGf~Fl~rLl~tk~~p--~dcp---d~Vy~~i~itvLacFC~~pElAsh~  100 (698)
T KOG2611|consen   26 EERFAALLLVTKFVKNDDIVALNKKLVFEAVGFHFLDRLLRTKSGP--GDCP---DDVYLQISITVLACFCRVPELASHE  100 (698)
T ss_pred             HHHHHHHHHHHHHhcccchhhhhhhhHHHHhccchHHHHhhcCCCC--CCCc---HHHHHHHHHHHHHHHhCChhhccCH
Confidence            3467888888888874    45666788888888888888764331  0000   1134556777788888888765322


Q ss_pred             HhcCcHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhhcC
Q 015851          154 VDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEF  218 (399)
Q Consensus       154 ~~~~~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~  218 (399)
                      --.+.||.+++++....+... .+...+...+-.+|..++.+ +.....+...|+++.+.++-.-
T Consensus       101 ~~v~~IP~llev~~~~~d~d~-e~~~~m~~d~Y~cL~~Va~~-e~G~~~Lia~G~~~~~~Q~y~~  163 (698)
T KOG2611|consen  101 EMVSRIPLLLEVMSKGIDTDY-EDNLIMLEDCYECLYLVATA-EAGLMTLIASGGLRVIAQMYEL  163 (698)
T ss_pred             HHHHhhhHHHHHHHhcCCCch-hhhHHHHHHHHHHHHHHhcC-CchhHHHHhcCchHHHHHHHhC
Confidence            222369999999987655421 11124777888889888865 5555668889999999876443

>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]

Probab=90.33  E-value=22  Score=35.85  Aligned_cols=282  Identities=13%  Similarity=0.074  Sum_probs=150.6

Q ss_pred             hhHHHHhhhhhc----ch-h-hhHHHHHHHHHHHHHHcC--C-hhHHHHHHhCCChHHHHhcccCCCCcccccCCCcchH
Q 015851           60 SAQVNVLNTTFS----WL-E-ADRAAAKRATHVLAELAK--N-EEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEH  130 (399)
Q Consensus        60 ~~~~~~L~~~l~----~~-~-~~~~~~~~a~~~L~~l~~--~-~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~  130 (399)
                      .+.++.+...+.    .+ + +++.-.+.|++.++++..  + +.....+.+.-+++.++..+++...            
T Consensus       407 qgiLsf~~sil~qsaa~psn~dnarq~egalr~lasi~s~itk~sp~an~me~fiv~hv~P~f~s~yg------------  474 (970)
T COG5656         407 QGILSFLLSILGQSAATPSNIDNARQAEGALRLLASIKSFITKMSPAANVMEYFIVNHVIPAFRSNYG------------  474 (970)
T ss_pred             hhHHHHHHHHHhcccCCCCccccHHHHhhHHHHHHHHHHHhccCchHHHHHHHHHHHHhhHhhcCccc------------
Confidence            445555555552    11 1 344556677777777765  3 3333445555667777777777665            


Q ss_pred             HHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhhcCchhHHHHHhc--CC
Q 015851          131 EVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRME--GG  208 (399)
Q Consensus       131 ~~~~~a~~~L~~l~~~~~~~~~i~~~~~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~--~~  208 (399)
                      -++..|+..+..+.  .+......-..+.+...+.+++..-        .++..++-++..+..++ .....+.++  +.
T Consensus       475 fL~Srace~is~~e--eDfkd~~ill~aye~t~ncl~nn~l--------pv~ieAalAlq~fi~~~-q~h~k~sahVp~t  543 (970)
T COG5656         475 FLKSRACEFISTIE--EDFKDNGILLEAYENTHNCLKNNHL--------PVMIEAALALQFFIFNE-QSHEKFSAHVPET  543 (970)
T ss_pred             chHHHHHHHHHHHH--HhcccchHHHHHHHHHHHHHhcCCc--------chhhhHHHHHHHHHhch-hhhHHHHhhhhHH
Confidence            57789999999986  2222222233456667777777433        67788888888888544 444444433  33


Q ss_pred             hHHHHHhhcCCCHHHHHHHHHHHH-HhhcCChhhHHHHHhc---CCHHHHHHhhcCCC------HHHHHHHHHHHHHhhc
Q 015851          209 IPPLVELLEFTDTKVQRAAAGALR-TLAFKNDENKNQIVEC---NALPTLILMLRSED------SAIHYEAVGVIGNLVH  278 (399)
Q Consensus       209 i~~L~~ll~~~~~~v~~~a~~~L~-~L~~~~~~~~~~~~~~---~~~~~L~~ll~~~~------~~v~~~a~~~L~~l~~  278 (399)
                      +..|+.+-..-+.++.......+. ..+..-.....++...   .++.....++..++      .+=+..|.+.|..+..
T Consensus       544 mekLLsLSn~feiD~LS~vMe~fVe~fseELspfa~eLa~~Lv~qFlkiaq~l~ens~d~~s~vDDKqmaasGiL~T~~s  623 (970)
T COG5656         544 MEKLLSLSNTFEIDPLSMVMESFVEYFSEELSPFAPELAGSLVRQFLKIAQSLLENSSDTSSVVDDKQMAASGILRTIES  623 (970)
T ss_pred             HHHHHHhcccccchHHHHHHHHHHHHhHHhhchhHHHHHHHHHHHHHHHHHHHHcCCccccccccHHHHHHHHHHHHHHH
Confidence            444444444444555554444432 2221111122222221   12333333343321      1334456666655431


Q ss_pred             --CChhHHHHH---HHCCCcHHHHHhhcCCChHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHhhCCCCH-HHHHH
Q 015851          279 --SSPNIKKEV---LAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDV-QLREM  352 (399)
Q Consensus       279 --~~~~~~~~~---~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~v~~L~~ll~~~~~-~v~~~  352 (399)
                        -+-+++..+   +.....|.+--.|.+.-.+.-.+|+..+-+++-...+..  =..-|+.+.+.+++.+... .-...
T Consensus       624 miLSlen~p~vLk~le~slypvi~Filkn~i~dfy~Ea~dildg~tf~skeI~--pimwgi~Ell~~~l~~~~t~~y~ee  701 (970)
T COG5656         624 MILSLENRPLVLKYLEVSLYPVISFILKNEISDFYQEALDILDGYTFMSKEIE--PIMWGIFELLLNLLIDEITAVYSEE  701 (970)
T ss_pred             HHHhcccchHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhhHHHHHhh--hhhhHHHHHHHhcccccchhhhHHH
Confidence              011111211   122344444445666667888888888888764322221  1223566777777766553 55678


Q ss_pred             HHHHHHHhhccCCC
Q 015851          353 SAFALGRLAQVITV  366 (399)
Q Consensus       353 a~~~L~~l~~~~~~  366 (399)
                      +.-++.|+..-+.+
T Consensus       702 ~~~al~nfityG~~  715 (970)
T COG5656         702 VADALDNFITYGKT  715 (970)
T ss_pred             HHHHHHHHHHhCcc
Confidence            88899998877654

>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised

Probab=89.96  E-value=0.79  Score=39.06  Aligned_cols=83  Identities=18%  Similarity=0.219  Sum_probs=61.2

Q ss_pred             HHHHHHHHHHHHHcCChhHHHHHHhCC-------ChHHHHhcccCCCCcccccCCCcchHHHHHHHHHHHHHhc-CChh-
Q 015851           78 AAAKRATHVLAELAKNEEVVNWIVEGG-------AVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA-VKPE-  148 (399)
Q Consensus        78 ~~~~~a~~~L~~l~~~~~~~~~~~~~g-------~l~~L~~lL~~~~~~~~~~~~~~~~~~~~~~a~~~L~~l~-~~~~-  148 (399)
                      +-|..|+++|++++-.+.+.+.+...+       ++..|++++.....           +-+|+-|+-.|.+|+ .+.. 
T Consensus       139 SPqrlaLEaLcKLsV~e~NVDliLaTpp~sRlE~l~~~L~r~l~~~e~-----------~v~REfAvvlL~~La~~~~~~  207 (257)
T PF12031_consen  139 SPQRLALEALCKLSVIENNVDLILATPPFSRLERLFHTLVRLLGMRED-----------QVCREFAVVLLSNLAQGDEAA  207 (257)
T ss_pred             CHHHHHHHHHHHhheeccCcceeeeCCCHHHHHHHHHHHHHHhccccc-----------hhHHHHHHHHHHHHhcccHHH
Confidence            458899999999998777766665544       45566677765443           378999999999999 3333 


Q ss_pred             hHHHHHhcCcHHHHHHHHhcccc
Q 015851          149 HQQLIVDNGALSHLVNLLKRHMD  171 (399)
Q Consensus       149 ~~~~i~~~~~i~~L~~~L~~~~~  171 (399)
                      .+..-.+.++|..|+.++.+...
T Consensus       208 ~r~iA~q~~~i~~Li~FiE~a~~  230 (257)
T PF12031_consen  208 ARAIAMQKPCISHLIAFIEDAEQ  230 (257)
T ss_pred             HHHHHHhhchHHHHHHHHHHHHH
Confidence            44555578899999999987653

This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.

>KOG2933 consensus Uncharacterized conserved protein [Function unknown]

Probab=89.61  E-value=4.7  Score=35.81  Aligned_cols=142  Identities=18%  Similarity=0.149  Sum_probs=93.2

Q ss_pred             cHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhhcC
Q 015851          158 ALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFK  237 (399)
Q Consensus       158 ~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~  237 (399)
                      .+...+..|.+.+.        +.....+..|..|+..++..-.... +.+|-.+++-+++....+-+.|+.++..+.+.
T Consensus        89 al~~~l~~L~s~dW--------~~~vdgLn~irrLs~fh~e~l~~~L-~~vii~vvkslKNlRS~VsraA~~t~~difs~  159 (334)
T KOG2933|consen   89 ALKQALKKLSSDDW--------EDKVDGLNSIRRLSEFHPESLNPML-HEVIIAVVKSLKNLRSAVSRAACMTLADIFSS  159 (334)
T ss_pred             HHHHHHHHhchHHH--------HHHhhhHHHHHHHHhhhHHHHHHHH-HHHHHHHHHHhcChHHHHHHHHHHHHHHHHHH
Confidence            34555566666554        6667777777777765543222111 34566777778888889999999999999874


Q ss_pred             ChhhHHHHHhcCCHHHHHHh-hc---CCCHHHHHHHHHHHHHhhcCChhHHHHHHHCCCcHHHHHhhcCCChHHHHHHHH
Q 015851          238 NDENKNQIVECNALPTLILM-LR---SEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAAL  313 (399)
Q Consensus       238 ~~~~~~~~~~~~~~~~L~~l-l~---~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~  313 (399)
                      ..+.....     +..++.. +.   .++.-++..|-.+|-.++.+-...       .+++.|+..+.+.++.++..++.
T Consensus       160 ln~~i~~~-----ld~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vtp~-------~~L~~L~~~~~~~n~r~r~~a~~  227 (334)
T KOG2933|consen  160 LNNSIDQE-----LDDLVTQLLHKASQDNRFVREDAEKALVAMVNHVTPQ-------KLLRKLIPILQHSNPRVRAKAAL  227 (334)
T ss_pred             HHHHHHHH-----HHHHHHHHHhhhcccchHHHHHHHHHHHHHHhccChH-------HHHHHHHHHHhhhchhhhhhhhc
Confidence            33333332     3333332 32   245568889999998887542222       24778888888888899999888


Q ss_pred             HHHHhhc
Q 015851          314 LLGQFAA  320 (399)
Q Consensus       314 ~L~~l~~  320 (399)
                      +..++..
T Consensus       228 ~~~~~v~  234 (334)
T KOG2933|consen  228 CFSRCVI  234 (334)
T ss_pred             cccccce
Confidence            8777654

>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]

Probab=89.60  E-value=2.7  Score=41.52  Aligned_cols=141  Identities=17%  Similarity=0.125  Sum_probs=101.6

Q ss_pred             hHHHHhhhhhcc--hhhhHHHHHHHHHHHHHHcC-ChhHHHHHHhCCChHHHHhccc-CCCCcccccCCCcchHHHHHHH
Q 015851           61 AQVNVLNTTFSW--LEADRAAAKRATHVLAELAK-NEEVVNWIVEGGAVPALVKHLQ-APPTSEADRNLKPFEHEVEKGS  136 (399)
Q Consensus        61 ~~~~~L~~~l~~--~~~~~~~~~~a~~~L~~l~~-~~~~~~~~~~~g~l~~L~~lL~-~~~~~~~~~~~~~~~~~~~~~a  136 (399)
                      ++-|...+.++.  .-.|+++|..|.-+|..++. ..+++..     -+|.|+..+. ++.+            .+|.+|
T Consensus       892 ~F~pvVeE~csn~~~~sd~~lq~aA~l~L~klMClS~~fc~e-----hlpllIt~mek~p~P------------~IR~Na  954 (1128)
T COG5098         892 NFKPVVEEGCSNSSRFSDEELQVAAYLSLYKLMCLSFEFCSE-----HLPLLITSMEKHPIP------------RIRANA  954 (1128)
T ss_pred             hhhHHHHHHhccccccCCHHHHHHHHHHHHHHHHHhHHHHHH-----HHHHHHHHHhhCCCc------------ceeccc
Confidence            345555555542  23678899999999999877 5555443     3788888887 5555            566689


Q ss_pred             HHHHHHhc-CChhhHHHHHhcCcHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHh
Q 015851          137 AFALGLLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVEL  215 (399)
Q Consensus       137 ~~~L~~l~-~~~~~~~~i~~~~~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~l  215 (399)
                      +-.|+.++ ......+.     ...+|.+-|.+.+.        .+++.++.++.+|.-..     ++.-.|-++.+..+
T Consensus       955 VvglgD~~vcfN~~~de-----~t~yLyrrL~De~~--------~V~rtclmti~fLilag-----q~KVKGqlg~ma~~ 1016 (1128)
T COG5098         955 VVGLGDFLVCFNTTADE-----HTHYLYRRLGDEDA--------DVRRTCLMTIHFLILAG-----QLKVKGQLGKMALL 1016 (1128)
T ss_pred             eeeccccceehhhhhHH-----HHHHHHHHhcchhh--------HHHHHHHHHHHHHHHcc-----ceeeccchhhhHhh
Confidence            88888887 22222221     34566666766655        89999999999998543     24446888999999


Q ss_pred             hcCCCHHHHHHHHHHHHHhhc
Q 015851          216 LEFTDTKVQRAAAGALRTLAF  236 (399)
Q Consensus       216 l~~~~~~v~~~a~~~L~~L~~  236 (399)
                      |.+++.++...|-..+-.++.
T Consensus      1017 L~deda~Isdmar~fft~~a~ 1037 (1128)
T COG5098        1017 LTDEDAEISDMARHFFTQIAK 1037 (1128)
T ss_pred             ccCCcchHHHHHHHHHHHHHh
Confidence            999999999999888888886

>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []

Probab=89.49  E-value=1.8  Score=43.62  Aligned_cols=166  Identities=17%  Similarity=0.159  Sum_probs=91.1

Q ss_pred             ChHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhhHHHHHhcCCHHHHHHhhcC----CCHHHHHHHHHHHHHhhcCChh-
Q 015851          208 GIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRS----EDSAIHYEAVGVIGNLVHSSPN-  282 (399)
Q Consensus       208 ~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~L~~ll~~----~~~~v~~~a~~~L~~l~~~~~~-  282 (399)
                      .+..+.+++.+....-.. +...|..+..........+     +..+..++..    +++.++..|+-+++.+....-. 
T Consensus       396 av~~i~~~I~~~~~~~~e-a~~~l~~l~~~~~~Pt~e~-----l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~~  469 (618)
T PF01347_consen  396 AVKFIKDLIKSKKLTDDE-AAQLLASLPFHVRRPTEEL-----LKELFELAKSPKVKNSPYLRETALLSLGSLVHKYCVN  469 (618)
T ss_dssp             HHHHHHHHHHTT-S-HHH-HHHHHHHHHHT-----HHH-----HHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHcCCCCHHH-HHHHHHHHHhhcCCCCHHH-----HHHHHHHHhCccccCChhHHHHHHHHHHHHhCceeec
Confidence            345566666664432222 3344444443221222222     3334445543    4567888888888888732100 


Q ss_pred             --------HHHHHHHCCCcHHHHHhhc----CCChHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHhhCCC---CH
Q 015851          283 --------IKKEVLAAGALQPVIGLLS----SCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSP---DV  347 (399)
Q Consensus       283 --------~~~~~~~~~~l~~L~~lL~----~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~v~~L~~ll~~~---~~  347 (399)
                              .....+....++.+...+.    ..+...+.-++.+|+|+-.  +.         .++.|..++.+.   +.
T Consensus       470 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~g~--~~---------~i~~l~~~i~~~~~~~~  538 (618)
T PF01347_consen  470 SDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVYLKALGNLGH--PE---------SIPVLLPYIEGKEEVPH  538 (618)
T ss_dssp             -----------SS--GGGTHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT---GG---------GHHHHHTTSTTSS-S-H
T ss_pred             ccccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHHHHHhhccCC--ch---------hhHHHHhHhhhccccch
Confidence                    0112223346666666665    3455777778889999842  22         366677777554   78


Q ss_pred             HHHHHHHHHHHHhhccCCCCcchhHHHHHhhccccHHHHHHHH
Q 015851          348 QLREMSAFALGRLAQVITVSVLPAILIFIIINECQLEVLAFVL  390 (399)
Q Consensus       348 ~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  390 (399)
                      .+|..|+++|..++...++.+.+.++....-.+...+++.++.
T Consensus       539 ~~R~~Ai~Alr~~~~~~~~~v~~~l~~I~~n~~e~~EvRiaA~  581 (618)
T PF01347_consen  539 FIRVAAIQALRRLAKHCPEKVREILLPIFMNTTEDPEVRIAAY  581 (618)
T ss_dssp             HHHHHHHHTTTTGGGT-HHHHHHHHHHHHH-TTS-HHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhcCcHHHHHHHHHHhcCCCCChhHHHHHH
Confidence            8999999999999888887777777777766555555554444

Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.

>smart00638 LPD_N Lipoprotein N-terminal Domain

Probab=89.38  E-value=25  Score=35.14  Aligned_cols=163  Identities=21%  Similarity=0.210  Sum_probs=93.6

Q ss_pred             hHHHHHhhcCC----CHHHHHHHHHHHHHhhcC---ChhhHHHHHhcCCHHHHHHhhc----CCCHHHHHHHHHHHHHhh
Q 015851          209 IPPLVELLEFT----DTKVQRAAAGALRTLAFK---NDENKNQIVECNALPTLILMLR----SEDSAIHYEAVGVIGNLV  277 (399)
Q Consensus       209 i~~L~~ll~~~----~~~v~~~a~~~L~~L~~~---~~~~~~~~~~~~~~~~L~~ll~----~~~~~v~~~a~~~L~~l~  277 (399)
                      +..+..++.++    .+.++..++-+++++...   +...+...+-...++.+...|.    ..+.+-+...+.+|+|+.
T Consensus       395 l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~g  474 (574)
T smart00638      395 LKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPDFVLEELLKYLHELLQQAVSKGDEEEIQLYLKALGNAG  474 (574)
T ss_pred             HHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHhcCCchheeeHHHhhhccC
Confidence            45566776653    456777777777777741   1111101111224555555443    345666778899999995


Q ss_pred             cCChhHHHHHHHCCCcHHHHHhhc---CCChHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHhhC--CCCHHHHHH
Q 015851          278 HSSPNIKKEVLAAGALQPVIGLLS---SCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQ--SPDVQLREM  352 (399)
Q Consensus       278 ~~~~~~~~~~~~~~~l~~L~~lL~---~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~v~~L~~ll~--~~~~~v~~~  352 (399)
                      .  +..         +..+..++.   ..+..+|..|+++|..++...+...        -+.|+.+..  ..++++|.+
T Consensus       475 ~--~~~---------i~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~~p~~v--------~~~l~~i~~n~~e~~EvRia  535 (574)
T smart00638      475 H--PSS---------IKVLEPYLEGAEPLSTFIRLAAILALRNLAKRDPRKV--------QEVLLPIYLNRAEPPEVRMA  535 (574)
T ss_pred             C--hhH---------HHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCchHH--------HHHHHHHHcCCCCChHHHHH
Confidence            3  332         334444443   2356899999999998875444322        234555553  468889887


Q ss_pred             HHHHHHHhhccCCCCcchhHHHHHhhccccHHHHHHHHhhh
Q 015851          353 SAFALGRLAQVITVSVLPAILIFIIINECQLEVLAFVLSEM  393 (399)
Q Consensus       353 a~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  393 (399)
                      |..+|...  +++...+..+.. .+..|...+|..++.+.|
T Consensus       536 A~~~lm~t--~P~~~~l~~ia~-~l~~E~~~QV~sfv~S~l  573 (574)
T smart00638      536 AVLVLMET--KPSVALLQRIAE-LLNKEPNLQVASFVYSHI  573 (574)
T ss_pred             HHHHHHhc--CCCHHHHHHHHH-HHhhcCcHHHHHHhHHhh
Confidence            77665443  222222333322 244566778888887764

>KOG1788 consensus Uncharacterized conserved protein [Function unknown]

Probab=89.13  E-value=22  Score=37.39  Aligned_cols=249  Identities=16%  Similarity=0.146  Sum_probs=131.9

Q ss_pred             HHHHhhhhhcchhhhHHHHHHHHHHHHHHcC-ChhHHHHHHhCCChHHHHhcccCCCCcccccCCCcchHHHHHHHHHHH
Q 015851           62 QVNVLNTTFSWLEADRAAAKRATHVLAELAK-NEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFAL  140 (399)
Q Consensus        62 ~~~~L~~~l~~~~~~~~~~~~a~~~L~~l~~-~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~~~~~a~~~L  140 (399)
                      .+++|..+. .+.++...+...+..+..+-. +|++-...-+.--+|.++--+..-..            .+|...+.+|
T Consensus       467 AvqmLqdiF-LkaenkdlqaeVlnrmfkIftshpeNYricqelytvpllvlnmegfPs------------slqvkiLkil  533 (2799)
T KOG1788|consen  467 AVQMLQDIF-LKAENKDLQAEVLNRMFKIFTSHPENYRICQELYTVPLLVLNMEGFPS------------SLQVKILKIL  533 (2799)
T ss_pred             HHHHHHHHH-HHhcCcchhhHHHHHHHHHhccChHHhhHHhhccccchhhhhhcCCCh------------HHHHHHHHHH
Confidence            344444433 244566678888888888876 68887766677788888777765544            4444444444


Q ss_pred             HHhc---CChhhHHHHHhcCcHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhhc
Q 015851          141 GLLA---VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLE  217 (399)
Q Consensus       141 ~~l~---~~~~~~~~i~~~~~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~  217 (399)
                      ..-.   .....++.       -.|.-+|+.+-..       .+....+.....|...+...+..+.+-|++..|-..++
T Consensus       534 EyAVtvvncvPeqEL-------lSLCvLLqqpIss-------alkhtIlsffvKLIsfDqqyKkvlREVGvLevLqddlk  599 (2799)
T KOG1788|consen  534 EYAVTVVNCVPEQEL-------LSLCVLLQQPISS-------ALKHTILSFFVKLISFDQQYKKVLREVGVLEVLQDDLK  599 (2799)
T ss_pred             HHHHhhhccCcHHHH-------HHHHHHhcchhhH-------HHHHHHHHHHHHHhhHHHHHHHHHHHhhHHHHHHHHHH
Confidence            3322   11122221       1233333332221       23333333333333334444444444444444433321


Q ss_pred             ---------------------------------------------CCC---H--HH---HHHHHHHHHHhhcCChhhHHH
Q 015851          218 ---------------------------------------------FTD---T--KV---QRAAAGALRTLAFKNDENKNQ  244 (399)
Q Consensus       218 ---------------------------------------------~~~---~--~v---~~~a~~~L~~L~~~~~~~~~~  244 (399)
                                                                   +++   +  .+   ......+|-.|...+.++...
T Consensus       600 qhkll~gpdqysgvsehydrnpss~sf~~~ld~~daiisspklmeSgsgklplfevlltitvgwDcLisllKnnteNqkl  679 (2799)
T KOG1788|consen  600 QHKLLRGPDQYSGVSEHYDRNPSSPSFKQHLDSQDAIISSPKLMESGSGKLPLFEVLLTITVGWDCLISLLKNNTENQKL  679 (2799)
T ss_pred             HhhhccCcchhhhHHHHhhcCCCCchhhhccccccceeecchhhcccCCccchhhhhhhhhchHHHHHHHHhccchhhHH
Confidence                                                         110   0  00   112244555666666777777


Q ss_pred             HHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHHCCCcHHHHHhhcCC--------C----hHHHHHHH
Q 015851          245 IVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSC--------C----SESQREAA  312 (399)
Q Consensus       245 ~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~--------~----~~v~~~a~  312 (399)
                      +.+..++..++..+  -+++-|...++++..+....+...    ++.-+-.++..|+++        +    ........
T Consensus       680 FreanGvklilpfl--indehRSslLrivscLitvdpkqv----hhqelmalVdtLksgmvt~Isgeqyklhfsllcdlm  753 (2799)
T KOG1788|consen  680 FREANGVKLILPFL--INDEHRSSLLRIVSCLITVDPKQV----HHQELMALVDTLKSGMVTRISGEQYKLHFSLLCDLM  753 (2799)
T ss_pred             HHhhcCceEEEEee--echHHHHHHHHHHHHHhccCcccc----cHHHHHHHHHHHHhcceeccchhHHHHHHHHHHHHH
Confidence            77777766666655  235667777777777765444321    111233444445431        1    23445566


Q ss_pred             HHHHHhhccChhhHHHHHhcCCHHHHHHhhC
Q 015851          313 LLLGQFAATDSDCKVHIVQRGAVRPLIEMLQ  343 (399)
Q Consensus       313 ~~L~~l~~~~~~~~~~l~~~g~v~~L~~ll~  343 (399)
                      ++++.+...+...+..+.+.+++..|...+.
T Consensus       754 GalwrivgvngsaqrvFgeatGFslLlttLh  784 (2799)
T KOG1788|consen  754 GALWRIVGVNGSAQRVFGEATGFSLLLTTLH  784 (2799)
T ss_pred             HHHHHHHccCchheeehhccccHHHHHHHHH
Confidence            7788877556667778888888888877773

>smart00638 LPD_N Lipoprotein N-terminal Domain

Probab=88.85  E-value=9.5  Score=38.07  Aligned_cols=140  Identities=23%  Similarity=0.213  Sum_probs=79.7

Q ss_pred             hHHHHhcccCCCCcccccCCCcchHHHHHHHHHHHHHhcC----ChhhHHHHHhcCcHHHHHHHHhccccCccccccHHH
Q 015851          106 VPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAV----KPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSV  181 (399)
Q Consensus       106 l~~L~~lL~~~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~----~~~~~~~i~~~~~i~~L~~~L~~~~~~~~~~~~~~~  181 (399)
                      +..+..++.++...        -.+.++..|..+++.+..    +.......+...+++.+...|.......+.    +-
T Consensus       395 l~~l~~l~~~~~~~--------~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~----~~  462 (574)
T smart00638      395 LKALFELAESPEVQ--------KQPYLRESALLAYGSLVRRYCVNTPSCPDFVLEELLKYLHELLQQAVSKGDE----EE  462 (574)
T ss_pred             HHHHHHHhcCcccc--------ccHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHhcCCc----hh
Confidence            45555666654321        123677777777777662    111110111223667777777653221110    44


Q ss_pred             HHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhhc-C--CCHHHHHHHHHHHHHhhcCChhhHHHHHhcCCHHHHHHhh
Q 015851          182 IRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLE-F--TDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILML  258 (399)
Q Consensus       182 ~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~-~--~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~L~~ll  258 (399)
                      +...+.+|+|+....           .++.+..++. +  .+..+|..|+++|..++...+..        +-+.++.++
T Consensus       463 ~~~~LkaLGN~g~~~-----------~i~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~~p~~--------v~~~l~~i~  523 (574)
T smart00638      463 IQLYLKALGNAGHPS-----------SIKVLEPYLEGAEPLSTFIRLAAILALRNLAKRDPRK--------VQEVLLPIY  523 (574)
T ss_pred             eeeHHHhhhccCChh-----------HHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCchH--------HHHHHHHHH
Confidence            566788888887321           2233444443 2  34689999999999888533332        345566666


Q ss_pred             cC--CCHHHHHHHHHHHHHh
Q 015851          259 RS--EDSAIHYEAVGVIGNL  276 (399)
Q Consensus       259 ~~--~~~~v~~~a~~~L~~l  276 (399)
                      .+  .++++|..|+.+|...
T Consensus       524 ~n~~e~~EvRiaA~~~lm~t  543 (574)
T smart00638      524 LNRAEPPEVRMAAVLVLMET  543 (574)
T ss_pred             cCCCCChHHHHHHHHHHHhc
Confidence            54  5678998888887655

>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length

Probab=88.80  E-value=15  Score=31.83  Aligned_cols=188  Identities=19%  Similarity=0.116  Sum_probs=99.8

Q ss_pred             HHHHHHHHHHHHHhcCCh-hhHHHHHhcCcHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhhcCchhHHHHHhcCC
Q 015851          130 HEVEKGSAFALGLLAVKP-EHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGG  208 (399)
Q Consensus       130 ~~~~~~a~~~L~~l~~~~-~~~~~i~~~~~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~  208 (399)
                      ++++...+.+|..++.+. .+...     ++..+..+.+....        +....+.+.+..+...++...      +.
T Consensus        15 ~~~~~~~L~~L~~l~~~~~~~~~~-----v~~~L~~L~~~~~~--------~~~~~~~rLl~~lw~~~~r~f------~~   75 (234)
T PF12530_consen   15 PELQLPLLEALPSLACHKNVCVPP-----VLQTLVSLVEQGSL--------ELRYVALRLLTLLWKANDRHF------PF   75 (234)
T ss_pred             hHHHHHHHHHHHHHhccCccchhH-----HHHHHHHHHcCCch--------hHHHHHHHHHHHHHHhCchHH------HH
Confidence            378889999999999544 33222     33444444444433        444566777777776555332      22


Q ss_pred             hHHHHHh--------hcC--CCHHHHHHHHHHHHHhhcCChhhHHHHHhcCCHHHHHHhh-cCCCHHHHHHHHHHHHHhh
Q 015851          209 IPPLVEL--------LEF--TDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILML-RSEDSAIHYEAVGVIGNLV  277 (399)
Q Consensus       209 i~~L~~l--------l~~--~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~L~~ll-~~~~~~v~~~a~~~L~~l~  277 (399)
                      +..++..        ..+  ...+.......++..++...++     .....++.+..++ .+.++.++..++.+|..++
T Consensus        76 L~~~L~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~-----~g~~ll~~ls~~L~~~~~~~~~alale~l~~Lc  150 (234)
T PF12530_consen   76 LQPLLLLLILRIPSSFSSKDEFWECLISIAASIRDICCSRPD-----HGVDLLPLLSGCLNQSCDEVAQALALEALAPLC  150 (234)
T ss_pred             HHHHHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHhChh-----hHHHHHHHHHHHHhccccHHHHHHHHHHHHHHH
Confidence            2222222        111  2245555556778888875555     2233567788888 7888899999999999998


Q ss_pred             cCChhHHHHHHHCCCcHHHHHhhcC-CChHHHHHHHHHHHHhhccChh-hHHHHHhcCCHHHHHHhhCCCC
Q 015851          278 HSSPNIKKEVLAAGALQPVIGLLSS-CCSESQREAALLLGQFAATDSD-CKVHIVQRGAVRPLIEMLQSPD  346 (399)
Q Consensus       278 ~~~~~~~~~~~~~~~l~~L~~lL~~-~~~~v~~~a~~~L~~l~~~~~~-~~~~l~~~g~v~~L~~ll~~~~  346 (399)
                      ...  .. .+  ......+..-+.. ..+.+....+..+..+....-+ ....-....++..+.++..+.+
T Consensus       151 ~~~--vv-d~--~s~w~vl~~~l~~~~rp~v~~~l~~l~~l~~~~~~~~e~~~~~~~~~l~~lW~~~~~~~  216 (234)
T PF12530_consen  151 EAE--VV-DF--YSAWKVLQKKLSLDYRPLVLKSLCSLFALVPQGAVDSEEYEELKRQILQLLWEYTSSSD  216 (234)
T ss_pred             HHh--hc-cH--HHHHHHHHHhcCCccchHHHHHHHHHHHHhccccCChhhhhHHHHHHHHHHHhhccccc
Confidence            321  11 11  1123333343432 3334444434333333322111 1122234455666666665544

>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length

Probab=88.36  E-value=22  Score=33.26  Aligned_cols=221  Identities=14%  Similarity=0.129  Sum_probs=116.3

Q ss_pred             cchHHHHHHHHHHHHHhcCChhhHHHHHhcC---cHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhhcCchhHHHH
Q 015851          127 PFEHEVEKGSAFALGLLAVKPEHQQLIVDNG---ALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRV  203 (399)
Q Consensus       127 ~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~~---~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~  203 (399)
                      +++..+..+|+++|+.+..+++....+.+.-   .+...+..+.....+.      .+....+|+|..--. .+    .+
T Consensus        57 p~~~~L~~qALkll~~~l~~~~i~~~l~~d~~~~~i~~~i~~l~~~~~~K------~i~~~~l~~ls~Q~f-~~----~~  125 (372)
T PF12231_consen   57 PFDSRLVIQALKLLGFFLYHPEIVSTLSDDFASFIIDHSIESLQNPNSPK------SICTHYLWCLSDQKF-SP----KI  125 (372)
T ss_pred             CcchHHHHHHHHHHHHHHccHHHHhhCChHHHHHHHHHHHHHHcCCCCCH------HHHHHHHHHHHcCCC-CC----cc
Confidence            4455888999999999998888776655432   3445555554444332      555556666554332 22    13


Q ss_pred             HhcCChHHHHHhh---c--CCCHHHHHHHHHHHHHhhcCChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhc
Q 015851          204 RMEGGIPPLVELL---E--FTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVH  278 (399)
Q Consensus       204 ~~~~~i~~L~~ll---~--~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~  278 (399)
                      .....+..++..+   .  -++..+....+.++.++....+.....-.. --+|.++..+-+....++..|..++..+..
T Consensus       126 ~~~~~~~~l~~~l~~i~~~~~s~si~~erL~i~~~ll~q~p~~M~~~~~-~W~~~l~~~l~~~~k~ir~~a~~l~~~~~~  204 (372)
T PF12231_consen  126 MTSDRVERLLAALHNIKNRFPSKSIISERLNIYKRLLSQFPQQMIKHAD-IWFPILFPDLLSSAKDIRTKAISLLLEAKK  204 (372)
T ss_pred             cchhhHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhcchHHHHHHHHHHHHHHH
Confidence            3333444444443   2  345678889999999999754443222211 246677766666677777776666655542


Q ss_pred             CChh---HH---HHHHHCCC---------cHHHHHhhcC-CChHHHHHHHHHHHHhhccChh--hHHHHHhcCCHHHHHH
Q 015851          279 SSPN---IK---KEVLAAGA---------LQPVIGLLSS-CCSESQREAALLLGQFAATDSD--CKVHIVQRGAVRPLIE  340 (399)
Q Consensus       279 ~~~~---~~---~~~~~~~~---------l~~L~~lL~~-~~~~v~~~a~~~L~~l~~~~~~--~~~~l~~~g~v~~L~~  340 (399)
                      .-+.   ..   ....+...         .+.|..++.+ .+.......=.++.-+. +++.  .-..+  ...+...-.
T Consensus       205 ~l~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~L~~mi~~~~~~~~a~~iW~~~i~LL-~~~~~~~w~~~--n~wL~v~e~  281 (372)
T PF12231_consen  205 CLGPNKELSKSVLEDLQRSLENGKLIQLYCERLKEMIKSKDEYKLAMQIWSVVILLL-GSSRLDSWEHL--NEWLKVPEK  281 (372)
T ss_pred             HhChhHHHHHHHHHHhccccccccHHHHHHHHHHHHHhCcCCcchHHHHHHHHHHHh-CCchhhccHhH--hHHHHHHHH
Confidence            1111   11   11112122         2235555555 22222111111222222 2221  11111  123444455


Q ss_pred             hhCCCCHHHHHHHHHHHHHhhc
Q 015851          341 MLQSPDVQLREMSAFALGRLAQ  362 (399)
Q Consensus       341 ll~~~~~~v~~~a~~~L~~l~~  362 (399)
                      ..+++++.++..|..+=..+..
T Consensus       282 cFn~~d~~~k~~A~~aW~~liy  303 (372)
T PF12231_consen  282 CFNSSDPQVKIQAFKAWRRLIY  303 (372)
T ss_pred             HhcCCCHHHHHHHHHHHHHHHH
Confidence            6678899999988866665554

Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=87.80  E-value=22  Score=36.63  Aligned_cols=81  Identities=9%  Similarity=0.041  Sum_probs=54.0

Q ss_pred             HHHHHCCCcHHHHHhhcCC--------ChHHHHHHHHHHHHhhccChhhHHHHHhc--------CCHHHHHHhhC---C-
Q 015851          285 KEVLAAGALQPVIGLLSSC--------CSESQREAALLLGQFAATDSDCKVHIVQR--------GAVRPLIEMLQ---S-  344 (399)
Q Consensus       285 ~~~~~~~~l~~L~~lL~~~--------~~~v~~~a~~~L~~l~~~~~~~~~~l~~~--------g~v~~L~~ll~---~-  344 (399)
                      ..+...+++..++.+.+.+        ..+....|..+|..++. -|+.+..+...        .++..++..-.   + 
T Consensus       595 enflkls~v~~~L~l~~~~~~w~~~spR~d~~~~Al~vL~i~t~-iP~iq~~La~~~~~n~~aydGiaIiL~~a~g~~~i  673 (1516)
T KOG1832|consen  595 ENFLKLSGVVTMLELCQTPPVWRYLSPRHDLLQYALGVLHIVTS-IPDIQKALAHATLSNNRAYDGIAIILDAANGSNSI  673 (1516)
T ss_pred             HHHHHhHHHHHHHHHHhcCccccccCcchHHHHHHHhheeeeEe-cchHHHHHHHHHhhcccccCceEEEeecccccccc
Confidence            3455567777777776532        23567778888887775 36666665432        24455555442   2 


Q ss_pred             CCHHHHHHHHHHHHHhhccCCC
Q 015851          345 PDVQLREMSAFALGRLAQVITV  366 (399)
Q Consensus       345 ~~~~v~~~a~~~L~~l~~~~~~  366 (399)
                      .++++++.|..+|.|+....|.
T Consensus       674 ~Dpei~~~AL~vIincVc~pp~  695 (1516)
T KOG1832|consen  674 VDPEIIQPALNVIINCVCPPPT  695 (1516)
T ss_pred             cCHHHHHHHHhhhheeecCCCC
Confidence            4899999999999999987753

>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]

Probab=87.04  E-value=5  Score=41.28  Aligned_cols=131  Identities=15%  Similarity=0.118  Sum_probs=91.4

Q ss_pred             CcchHHHHHHHHHHHHHhc-CChhhHHHHHhcCcHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhhcCchhHHHHH
Q 015851          126 KPFEHEVEKGSAFALGLLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVR  204 (399)
Q Consensus       126 ~~~~~~~~~~a~~~L~~l~-~~~~~~~~i~~~~~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~  204 (399)
                      ..+.+.++.++.-+|+++| .+.....     ..+|.|++-|.....-       .++-+..-+++.+|.+.     .+.
T Consensus       941 ~~~~~~vra~~vvTlakmcLah~~LaK-----r~~P~lvkeLe~~~~~-------aiRnNiV~am~D~C~~Y-----Tam 1003 (1529)
T KOG0413|consen  941 AMFSDKVRAVGVVTLAKMCLAHDRLAK-----RLMPMLVKELEYNTAH-------AIRNNIVLAMGDICSSY-----TAM 1003 (1529)
T ss_pred             cccchHHHHHHHHHHHHHHhhhhHHHH-----HHHHHHHHHHHhhhHH-------HHhcceeeeehhhHHHH-----HHH
Confidence            3445688999999999999 5544433     2689999988876553       56666667777777532     233


Q ss_pred             hcCChHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhhHHHHHhcCC-HHHHHHhhcCCCHHHHHHHHHHHHHhhc
Q 015851          205 MEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNA-LPTLILMLRSEDSAIHYEAVGVIGNLVH  278 (399)
Q Consensus       205 ~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~-~~~L~~ll~~~~~~v~~~a~~~L~~l~~  278 (399)
                      ....+|.+...|.++++-+|+.+.-.|.+|.+.  +   .+...|. +=.++..+-+.+++++..|-.+++.+..
T Consensus      1004 ~d~YiP~I~~~L~Dp~~iVRrqt~ilL~rLLq~--~---~vKw~G~Lf~Rf~l~l~D~~edIr~~a~f~~~~vL~ 1073 (1529)
T KOG0413|consen 1004 TDRYIPMIAASLCDPSVIVRRQTIILLARLLQF--G---IVKWNGELFIRFMLALLDANEDIRNDAKFYISEVLQ 1073 (1529)
T ss_pred             HHHhhHHHHHHhcCchHHHHHHHHHHHHHHHhh--h---hhhcchhhHHHHHHHHcccCHHHHHHHHHHHHHHHh
Confidence            456799999999999999999999999999962  1   1222222 2233333345678888888888887763

>PF11229 DUF3028: Protein of unknown function (DUF3028); InterPro: IPR021392 This eukaryotic family of proteins has no known function

Probab=86.82  E-value=30  Score=33.24  Aligned_cols=239  Identities=13%  Similarity=0.068  Sum_probs=113.7

Q ss_pred             hhhHHHHhhhhhcchhhhHHHHHHHHHHHHHHcCChhHHH----HH--------HhCCChHHHHhcccCCCCcccccCCC
Q 015851           59 VSAQVNVLNTTFSWLEADRAAAKRATHVLAELAKNEEVVN----WI--------VEGGAVPALVKHLQAPPTSEADRNLK  126 (399)
Q Consensus        59 ~~~~~~~L~~~l~~~~~~~~~~~~a~~~L~~l~~~~~~~~----~~--------~~~g~l~~L~~lL~~~~~~~~~~~~~  126 (399)
                      .+++++.-.+++-........|..|+..|..+..++...-    ..        .-..+|..+.++++.+..-       
T Consensus        40 ~~~ll~~w~ki~laeg~ptm~~laa~~GlvaLvgse~~~iQlkse~~~ss~~q~~lnevir~ltqvis~sg~i-------  112 (589)
T PF11229_consen   40 GNRLLPAWIKIVLAEGCPTMQRLAALNGLVALVGSEGDLIQLKSEAIQSSQFQSRLNEVIRTLTQVISFSGVI-------  112 (589)
T ss_pred             hhhHHHHHHHHHHhcCCcHHHHHHHhhchhheeccccceeeehhhcccCHHHHHHHHHHHHHHHHHHcCcccc-------
Confidence            4444443333332122334566777777777665321100    10        1124677777777655432       


Q ss_pred             cchHHHHHHHHHHHHHhc----CC-------hhhHHHHHhcCcHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhhc
Q 015851          127 PFEHEVEKGSAFALGLLA----VK-------PEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHE  195 (399)
Q Consensus       127 ~~~~~~~~~a~~~L~~l~----~~-------~~~~~~i~~~~~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~  195 (399)
                          .++.+++|.|++|-    ..       |..-..+-+..++...+.++-......+..-.......++..|....  
T Consensus       113 ----glQsn~~wlLGhLhls~~ss~~srtsvP~d~sYLpE~S~iRaai~f~i~~GkkGpe~vpp~lvkvvl~~ia~vg--  186 (589)
T PF11229_consen  113 ----GLQSNAAWLLGHLHLSTLSSSQSRTSVPTDFSYLPESSFIRAAIDFLIEAGKKGPESVPPSLVKVVLKPIATVG--  186 (589)
T ss_pred             ----ccccchHHHHHHHHHhhcccccCCCCCCCccccCcchhHHHHHHHHHHHccccCCccCCHHHHHHHHHHhhhcC--
Confidence                57889999999874    11       11222334555666666666433221110000134444444443332  


Q ss_pred             CchhHHH-HHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHH
Q 015851          196 NSSIKTR-VRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIG  274 (399)
Q Consensus       196 ~~~~~~~-~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~  274 (399)
                       +..+.. +--.-.+..|+++  +..++++..++.....=+. ...+...++..-..|.++.-++..   .+.+.+.-+.
T Consensus       187 -eS~qyPPVNWaalLsPLMRl--nfGeEvq~lCLeiAvtQaq-SSqsAa~fLg~WlsPpli~sLs~~---tk~~L~~Sl~  259 (589)
T PF11229_consen  187 -ESYQYPPVNWAALLSPLMRL--NFGEEVQQLCLEIAVTQAQ-SSQSAAMFLGSWLSPPLIHSLSVN---TKKYLFESLS  259 (589)
T ss_pred             -CCCCCCCccHHHHhhHHHhc--cccHHHHHHHHHHHHHhcc-ccccHHHHHHhhcCcchhhhhhHH---HHHHHHHHHH
Confidence             111100 1111234455555  3357788777765544444 455666777776777776666543   3333333333


Q ss_pred             HhhcC-ChhHHHHHHHCCCcHHHHHhhcCCChHHHHHHHHHHHH
Q 015851          275 NLVHS-SPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQ  317 (399)
Q Consensus       275 ~l~~~-~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~  317 (399)
                      ....+ .++..+.+.+.-+++.+-..-.-.++++...+..-|..
T Consensus       260 ~wmkhVsedqiQ~Fve~l~vq~F~~~~~~~~~~lC~saLqGLsq  303 (589)
T PF11229_consen  260 LWMKHVSEDQIQAFVENLMVQQFKAASRPSNPELCQSALQGLSQ  303 (589)
T ss_pred             HHHhhCCHHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHH
Confidence            33322 23333444433333333322223445666666655554

>PF08167 RIX1: rRNA processing/ribosome biogenesis

Probab=86.15  E-value=9.3  Score=31.01  Aligned_cols=112  Identities=17%  Similarity=0.141  Sum_probs=68.3

Q ss_pred             cHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhhcCchhHHHHHh--cCChHHHHHhhcCCC-HHHHHHHHHHHHHh
Q 015851          158 ALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRM--EGGIPPLVELLEFTD-TKVQRAAAGALRTL  234 (399)
Q Consensus       158 ~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~--~~~i~~L~~ll~~~~-~~v~~~a~~~L~~L  234 (399)
                      .+..+..+|.+.+.        .-+..++..+.-.+..++.  +.+..  ...+..++..++.++ +.+...++.+|..|
T Consensus        26 l~~ri~~LL~s~~~--------~~rw~G~~Ll~~~~~~~~~--e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l   95 (165)
T PF08167_consen   26 LVTRINSLLQSKSA--------YSRWAGLCLLKVTVEQCSW--EILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRL   95 (165)
T ss_pred             HHHHHHHHhCCCCh--------hhHHHHHHHHHHHHHHhhH--HHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence            45566777776655        5556677777777754422  23322  245788888888866 56777777777766


Q ss_pred             hc---CChhhHHHHHhc---CCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCh
Q 015851          235 AF---KNDENKNQIVEC---NALPTLILMLRSEDSAIHYEAVGVIGNLVHSSP  281 (399)
Q Consensus       235 ~~---~~~~~~~~~~~~---~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~  281 (399)
                      ..   +.++..+++...   ++++.++++++.  ......++.+|..+....+
T Consensus        96 ~~~~~~~p~l~Rei~tp~l~~~i~~ll~l~~~--~~~~~~~l~~L~~ll~~~p  146 (165)
T PF08167_consen   96 FDLIRGKPTLTREIATPNLPKFIQSLLQLLQD--SSCPETALDALATLLPHHP  146 (165)
T ss_pred             HHHhcCCCchHHHHhhccHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHHCC
Confidence            64   455656565543   334455555553  4566677777777664333

>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane

Probab=86.10  E-value=29  Score=32.36  Aligned_cols=159  Identities=14%  Similarity=0.159  Sum_probs=88.2

Q ss_pred             HHHhcCChhhHHHHHhcCcHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhhc--
Q 015851          140 LGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLE--  217 (399)
Q Consensus       140 L~~l~~~~~~~~~i~~~~~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~--  217 (399)
                      +-+++.+++-. .+.+.+-.+.+-+-+...+..       .-+..|+..+..|+...+..-..+    +...+-.++.  
T Consensus       194 ~Pnl~~~e~D~-ElfEddP~EYIrrd~e~sd~~-------TrR~AA~dfl~~L~~~~~~~v~~i----~~~~i~~~l~~y  261 (370)
T PF08506_consen  194 FPNLCLREEDE-ELFEDDPEEYIRRDLEGSDSD-------TRRRAACDFLRSLCKKFEKQVTSI----LMQYIQQLLQQY  261 (370)
T ss_dssp             HHHHS--HHHH-HHHHHSHHHHHHHHSCSS----------SHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHH
T ss_pred             cCccCCCHHHH-HHHccCHHHHHHhhccccccC-------CcHHHHHHHHHHHHHHHhHHHHHH----HHHHHHHHHHHH
Confidence            44555433322 233344455555554432211       566788889999985322211111    1122223332  


Q ss_pred             ----CCCHHHHHHHHHHHHHhhcCChh------------hHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCh
Q 015851          218 ----FTDTKVQRAAAGALRTLAFKNDE------------NKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSP  281 (399)
Q Consensus       218 ----~~~~~v~~~a~~~L~~L~~~~~~------------~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~  281 (399)
                          +.++.-+..|+..++.|+.....            +...+....++|-|. --.+..+-++..|++.+......-+
T Consensus       262 ~~~~~~~w~~KD~Al~Li~ala~k~~t~~~Gvt~~~~~v~v~~Ff~~~v~peL~-~~~~~~piLka~aik~~~~Fr~~l~  340 (370)
T PF08506_consen  262 ASNPSNNWRSKDGALYLIGALASKGSTTKSGVTQTNELVDVVDFFSQHVLPELQ-PDVNSHPILKADAIKFLYTFRNQLP  340 (370)
T ss_dssp             HH-TTT-HHHHHHHHHHHHHHHBSS--BTTB-S-B-TTS-HHHHHHHHTCHHHH--SS-S-HHHHHHHHHHHHHHGGGS-
T ss_pred             hhCCcccHHHHHHHHHHHHHHHhhhccccCCcccccccccHHHHHHHHhHHHhc-ccCCCCcchHHHHHHHHHHHHhhCC
Confidence                34578889999999999974321            223444444555554 1123467789999999988864322


Q ss_pred             hHHHHHHHCCCcHHHHHhhcCCChHHHHHHHHHH
Q 015851          282 NIKKEVLAAGALQPVIGLLSSCCSESQREAALLL  315 (399)
Q Consensus       282 ~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L  315 (399)
                      .  ..+  .++++.++.+|.+++.-+...|+.++
T Consensus       341 ~--~~l--~~~~~~l~~~L~~~~~vv~tyAA~~i  370 (370)
T PF08506_consen  341 K--EQL--LQIFPLLVNHLQSSSYVVHTYAAIAI  370 (370)
T ss_dssp             H--HHH--HHHHHHHHHHTTSS-HHHHHHHHHHH
T ss_pred             H--HHH--HHHHHHHHHHhCCCCcchhhhhhhhC
Confidence            2  222  34799999999999999999998775

Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.

>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional

Probab=85.71  E-value=68  Score=36.63  Aligned_cols=270  Identities=14%  Similarity=0.125  Sum_probs=138.7

Q ss_pred             hHHHHHHHHHHHHHHcCC----hhHHHHHHhCCChHHHHhcccCCCCcccccCCCcchHHHHHHHHHHHHHhcCChhhHH
Q 015851           76 DRAAAKRATHVLAELAKN----EEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQ  151 (399)
Q Consensus        76 ~~~~~~~a~~~L~~l~~~----~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~  151 (399)
                      +..+...|+..|..++..    ++....-.+..++.++..++.+...           .++++..+.++.++....   .
T Consensus      1150 n~~va~fAidsLrQLs~kfle~eEL~~f~FQkefLkPfe~im~~s~~-----------~eVrE~ILeCv~qmI~s~---~ 1215 (1780)
T PLN03076       1150 NLSIAIFAMDSLRQLSMKFLEREELANYNFQNEFMKPFVIVMRKSNA-----------VEIRELIIRCVSQMVLSR---V 1215 (1780)
T ss_pred             chhHHHHHHHHHHHHHHHhcchhhhhchhHHHHHHHHHHHHHHhcCc-----------hHHHHHHHHHHHHHHHHH---H
Confidence            455778888888887652    2322233355677888887775433           288999999999887211   1


Q ss_pred             HHHhcCcHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhhcCch-h----HHHHHhcCChHHHHHhhcCC-CHHHHH
Q 015851          152 LIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSS-I----KTRVRMEGGIPPLVELLEFT-DTKVQR  225 (399)
Q Consensus       152 ~i~~~~~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~-~----~~~~~~~~~i~~L~~ll~~~-~~~v~~  225 (399)
                      .-+.. +=+.++.++.....+..    ..+...+..++..+..+.-. .    ...+  ...|..+..+.... +.++--
T Consensus      1216 ~nIkS-GWktIF~VLs~aa~d~~----e~iV~lAFetl~~I~~d~f~~l~~~~~~~F--~DlV~cL~~Fa~q~~~~nISL 1288 (1780)
T PLN03076       1216 NNVKS-GWKSMFMVFTTAAYDDH----KNIVLLAFEIIEKIIREYFPYITETETTTF--TDCVNCLIAFTNSRFNKDISL 1288 (1780)
T ss_pred             hhhhc-CcHHHHHHHHHHHhCcc----HHHHHHHHHHHHHHHHhhhhhccccchhHH--HHHHHHHHHHHhCcCcccccH
Confidence            11223 34555555553211110    06777777777776642111 0    0111  12334444444333 356666


Q ss_pred             HHHHHHHHhhcCChhh------------------------HHH--------HHhcCCHHHHH---HhhcCCCHHHHHHHH
Q 015851          226 AAAGALRTLAFKNDEN------------------------KNQ--------IVECNALPTLI---LMLRSEDSAIHYEAV  270 (399)
Q Consensus       226 ~a~~~L~~L~~~~~~~------------------------~~~--------~~~~~~~~~L~---~ll~~~~~~v~~~a~  270 (399)
                      .|+..|++++..-.+.                        ...        ......+|.|.   .+..++.++||..|+
T Consensus      1289 ~AI~lL~~~~~~La~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~lW~pLL~~Ls~l~~D~RlEVR~~AL 1368 (1780)
T PLN03076       1289 NAIAFLRFCATKLAEGDLGSSSRNKDKEAPPSSPQSGKDGKQESGEFTDKDDHLYFWFPLLAGLSELSFDPRPEIRKSAL 1368 (1780)
T ss_pred             HHHHHHHHHHHHHHhccccccccccccccccccccccccccccccccccchhHHHHHHHHHHHHHHHhcCCcHHHHHHHH
Confidence            7777777663210000                        000        00011233333   334567889999999


Q ss_pred             HHHHHhhcCC-----hhHHHHHHHCCCcHHHHHhhcCC-------------------ChH----HHHHHHHHHHHhhccC
Q 015851          271 GVIGNLVHSS-----PNIKKEVLAAGALQPVIGLLSSC-------------------CSE----SQREAALLLGQFAATD  322 (399)
Q Consensus       271 ~~L~~l~~~~-----~~~~~~~~~~~~l~~L~~lL~~~-------------------~~~----v~~~a~~~L~~l~~~~  322 (399)
                      .+|-.+....     +.....+. .+++-+++..++..                   +.+    ....+..+|.+++.--
T Consensus      1369 qtLF~iL~~yG~~Fs~~~W~~if-~~VLFPIFd~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~Wl~eT~~~AL~~lvdLf 1447 (1780)
T PLN03076       1369 QVLFDTLRNHGHLFSLPLWERVF-ESVLFPIFDYVRHAIDPSGGDEPEGQGVDGDQGELDQDAWLYETCTLALQLVVDLF 1447 (1780)
T ss_pred             HHHHHHHHHhhccCCHHHHHHHH-HHHHHHHHHHHHHhhccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHH
Confidence            9987765321     11222222 24455555444311                   001    1122333444443211


Q ss_pred             hhhHHHHHh--cCCHHHHHHhhCCCCHHHHHHHHHHHHHhhccCCCC
Q 015851          323 SDCKVHIVQ--RGAVRPLIEMLQSPDVQLREMSAFALGRLAQVITVS  367 (399)
Q Consensus       323 ~~~~~~l~~--~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~  367 (399)
                      ......+..  .+++..|..++..++..+.+.+..+|.+|......+
T Consensus      1448 t~fFd~L~~~L~~~l~ll~~ci~q~n~~la~ig~~~l~~li~~ng~~ 1494 (1780)
T PLN03076       1448 VKFYPTVNPLLKKVLMLLVSFIKRPHQSLAGIGIAAFVRLMSNAGHL 1494 (1780)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHhhcc
Confidence            111122211  334555555666788999999999999999877764

>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=85.00  E-value=45  Score=33.52  Aligned_cols=94  Identities=20%  Similarity=0.216  Sum_probs=64.7

Q ss_pred             hhhhHHHHHHHHHHHHHHcCChhHHHHHHhCCChHHHHhcccCCCCcccccCCCcchHHHHHHHHHHHHHhcCChhhHHH
Q 015851           73 LEADRAAAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQL  152 (399)
Q Consensus        73 ~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~  152 (399)
                      .+.+..+|...+..|..++.....++.-+-.++...+..-+.+..+            .+|.+|+.+|..+-.++..-  
T Consensus        95 Eskdk~VRfrvlqila~l~d~~~eidd~vfn~l~e~l~~Rl~Drep------------~VRiqAv~aLsrlQ~d~~de--  160 (892)
T KOG2025|consen   95 ESKDKKVRFRVLQILALLSDENAEIDDDVFNKLNEKLLIRLKDREP------------NVRIQAVLALSRLQGDPKDE--  160 (892)
T ss_pred             cCcchhHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHhccCc------------hHHHHHHHHHHHHhcCCCCC--
Confidence            4556778999999999988854444444445666777776666665            68999999999998433221  


Q ss_pred             HHhcCcHHHHHHHHhccccCccccccHHHHHHHHHHH
Q 015851          153 IVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAI  189 (399)
Q Consensus       153 i~~~~~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L  189 (399)
                        +..++..+..+++..+.+       ++++.++..|
T Consensus       161 --e~~v~n~l~~liqnDpS~-------EVRRaaLsnI  188 (892)
T KOG2025|consen  161 --ECPVVNLLKDLIQNDPSD-------EVRRAALSNI  188 (892)
T ss_pred             --cccHHHHHHHHHhcCCcH-------HHHHHHHHhh
Confidence              133577788888776654       8888765533

>PF14726 RTTN_N: Rotatin, an armadillo repeat protein, centriole functioning

Probab=84.59  E-value=8.7  Score=28.03  Aligned_cols=69  Identities=16%  Similarity=0.071  Sum_probs=54.6

Q ss_pred             HCCCcHHHHHhhcCCChHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHH
Q 015851          289 AAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALG  358 (399)
Q Consensus       289 ~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~v~~L~~ll~~~~~~v~~~a~~~L~  358 (399)
                      ....+..|+.+++.++.....++...|..++. .+.....+.+-|++..|-++-..-++..+...-..+.
T Consensus        28 ~~~Ll~~LleWFnf~~~~~~~~VL~Ll~~L~~-~~~a~~~l~~iG~~~fL~klr~~~~~~~~~~id~il~   96 (98)
T PF14726_consen   28 ERLLLKQLLEWFNFPPVPMKEEVLALLLRLLK-SPYAAQILRDIGAVRFLSKLRPNVEPNLQAEIDEILD   96 (98)
T ss_pred             HHHHHHHHHHHhCCCCCccHHHHHHHHHHHHh-CcHHHHHHHHccHHHHHHHHHhcCCHHHHHHHHHHHh
Confidence            34578899999998888889999999999885 5778888999999999888776667766665555543

>KOG1949 consensus Uncharacterized conserved protein [Function unknown]

Probab=84.37  E-value=25  Score=35.15  Aligned_cols=170  Identities=15%  Similarity=0.153  Sum_probs=97.5

Q ss_pred             HHHHHHHHHHHHhc--CChhh----HHHHHhcCcHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhh----cCchhH
Q 015851          131 EVEKGSAFALGLLA--VKPEH----QQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAH----ENSSIK  200 (399)
Q Consensus       131 ~~~~~a~~~L~~l~--~~~~~----~~~i~~~~~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~----~~~~~~  200 (399)
                      .+|.+|+..+.++.  .+|+.    .+.+++. -...+..+|.++..        .++..+..-+....+    --|.. 
T Consensus       189 ~VrsnAa~lf~~~fP~~dpd~~~e~mD~i~~k-Qf~~l~~LL~d~~p--------~VRS~a~~gv~k~~s~fWe~iP~~-  258 (1005)
T KOG1949|consen  189 EVRSNAALLFVEAFPIRDPDLHAEEMDSIIQK-QFEELYSLLEDPYP--------MVRSTAILGVCKITSKFWEMIPPT-  258 (1005)
T ss_pred             hhhhhHHHHHHHhccCCCCCccHHHHHHHHHH-HHHHHHHHhcCCCc--------hHHHHHHHHHHHHHHHHHHHcCHH-
Confidence            78889999999988  56654    3333432 46678888887766        455444333333222    11110 


Q ss_pred             HHHHhcCChHHHHHhhcC-CCHHHHHHHHHHHHHhhcCChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcC
Q 015851          201 TRVRMEGGIPPLVELLEF-TDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHS  279 (399)
Q Consensus       201 ~~~~~~~~i~~L~~ll~~-~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~  279 (399)
                        + -...+..+..-+.. ...++|......|-.+.. +|... -+.+. ++|.+-..|.++.+.||..+...|..|-..
T Consensus       259 --i-~~~ll~kI~d~~a~dt~s~VR~svf~gl~~~l~-np~sh-~~le~-~Lpal~~~l~D~se~VRvA~vd~ll~ik~v  332 (1005)
T KOG1949|consen  259 --I-LIDLLKKITDELAFDTSSDVRCSVFKGLPMILD-NPLSH-PLLEQ-LLPALRYSLHDNSEKVRVAFVDMLLKIKAV  332 (1005)
T ss_pred             --H-HHHHHHHHHHHhhhccchheehhHhcCcHHHHc-Cccch-hHHHH-HHHhcchhhhccchhHHHHHHHHHHHHHhh
Confidence              1 11223333333333 336889988888888886 44432 22222 466666777788899999998888877421


Q ss_pred             ChhHHHHHHHCCCcHHHHHhhcCCChHHHHHHHHHHHHhh
Q 015851          280 SPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFA  319 (399)
Q Consensus       280 ~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~  319 (399)
                         ....+.+---++.++.-|...+..+.+.-+..|.+.+
T Consensus       333 ---ra~~f~~I~~~d~~l~~L~~d~~~v~rr~~~li~~s~  369 (1005)
T KOG1949|consen  333 ---RAAKFWKICPMDHILVRLETDSRPVSRRLVSLIFNSF  369 (1005)
T ss_pred             ---hhhhhhccccHHHHHHHHhccccHHHHHHHHHHHHhh
Confidence               1122333334555666666655555555555555444

>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p []

Probab=83.64  E-value=21  Score=31.86  Aligned_cols=71  Identities=17%  Similarity=0.157  Sum_probs=50.8

Q ss_pred             CChHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhhH-HHHHhcCCHHHHHHhh----c--------CCCHHHHHHHHHHH
Q 015851          207 GGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENK-NQIVECNALPTLILML----R--------SEDSAIHYEAVGVI  273 (399)
Q Consensus       207 ~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~-~~~~~~~~~~~L~~ll----~--------~~~~~v~~~a~~~L  273 (399)
                      -++|.++.++.+.++.++..++.+|..+....+... ..+.+.|..+.+-..+    .        .+...+...+.-++
T Consensus       119 liiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s~~Ll~~ay~~L  198 (282)
T PF10521_consen  119 LIIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDESLELLQAAYPAL  198 (282)
T ss_pred             HHHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHHH
Confidence            568999999999999999999999999997433332 2366677666554433    3        23446777777777


Q ss_pred             HHhh
Q 015851          274 GNLV  277 (399)
Q Consensus       274 ~~l~  277 (399)
                      ..++
T Consensus       199 ~~L~  202 (282)
T PF10521_consen  199 LSLL  202 (282)
T ss_pred             HHHH
Confidence            7774

>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II

Probab=83.59  E-value=31  Score=30.47  Aligned_cols=215  Identities=12%  Similarity=0.083  Sum_probs=114.3

Q ss_pred             hhhhHHHHHHHHHHHHHHcCC-hhHHHHHHhCCChHHHHhcccCCCCcccccCCCcchHHHHHHHHHHHHHhcCChhhHH
Q 015851           73 LEADRAAAKRATHVLAELAKN-EEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQ  151 (399)
Q Consensus        73 ~~~~~~~~~~a~~~L~~l~~~-~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~  151 (399)
                      .++|...|.+|+..|..+... +...   ....-+..|++++.+.-.          ++.....++.++..|........
T Consensus         9 tsed~~~R~ka~~~Ls~vL~~lp~~~---L~~~ev~~L~~F~~~rl~----------D~~~~~~~l~gl~~L~~~~~~~~   75 (262)
T PF14500_consen    9 TSEDPIIRAKALELLSEVLERLPPDF---LSRQEVQVLLDFFCSRLD----------DHACVQPALKGLLALVKMKNFSP   75 (262)
T ss_pred             CCCCHHHHHHHHHHHHHHHHhCCHhh---ccHHHHHHHHHHHHHHhc----------cHhhHHHHHHHHHHHHhCcCCCh
Confidence            567888999999999988774 3211   111224444444433211          11333344666666552222111


Q ss_pred             HHHhcCcHHHHHHHHhcc-ccCccccccHHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhhcC-CCHHHHHHHHH
Q 015851          152 LIVDNGALSHLVNLLKRH-MDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEF-TDTKVQRAAAG  229 (399)
Q Consensus       152 ~i~~~~~i~~L~~~L~~~-~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~-~~~~v~~~a~~  229 (399)
                           +....+++.+... +.....   ...+..+...+..+.......- .-...+.+..++..+.. .||...-.+..
T Consensus        76 -----~~~~~i~~~l~~~~~~q~~~---q~~R~~~~~ll~~l~~~~~~~l-~~~~~~fv~~~i~~~~gEkDPRnLl~~F~  146 (262)
T PF14500_consen   76 -----ESAVKILRSLFQNVDVQSLP---QSTRYAVYQLLDSLLENHREAL-QSMGDDFVYGFIQLIDGEKDPRNLLLSFK  146 (262)
T ss_pred             -----hhHHHHHHHHHHhCChhhhh---HHHHHHHHHHHHHHHHHhHHHH-HhchhHHHHHHHHHhccCCCHHHHHHHHH
Confidence                 1122333332221 111100   1567777788888875432211 11234567777777765 46888877777


Q ss_pred             HHHHhhcCChhhHHHHHhcCCHHHHHHhhc--------C--CCH--HHHHHHHHHHHHhhcCChhHHHHHHHCCCcHHHH
Q 015851          230 ALRTLAFKNDENKNQIVECNALPTLILMLR--------S--EDS--AIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVI  297 (399)
Q Consensus       230 ~L~~L~~~~~~~~~~~~~~~~~~~L~~ll~--------~--~~~--~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~  297 (399)
                      .+..+....+-       ....+-+-..+.        .  +++  -.+..-...|.+....++...     .-.++.|+
T Consensus       147 l~~~i~~~~~~-------~~~~e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~s~~~fa-----~~~~p~Ll  214 (262)
T PF14500_consen  147 LLKVILQEFDI-------SEFAEDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLSSTPLFA-----PFAFPLLL  214 (262)
T ss_pred             HHHHHHHhccc-------chhHHHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhcCcHhhH-----HHHHHHHH
Confidence            77777653331       122333333332        1  122  233334444444333334332     23689999


Q ss_pred             HhhcCCChHHHHHHHHHHHHhhcc
Q 015851          298 GLLSSCCSESQREAALLLGQFAAT  321 (399)
Q Consensus       298 ~lL~~~~~~v~~~a~~~L~~l~~~  321 (399)
                      +-|.++.+.++..++.+|..++..
T Consensus       215 eKL~s~~~~~K~D~L~tL~~c~~~  238 (262)
T PF14500_consen  215 EKLDSTSPSVKLDSLQTLKACIEN  238 (262)
T ss_pred             HHHcCCCcHHHHHHHHHHHHHHHH
Confidence            999999999999999999988754

>PF04869 Uso1_p115_head: Uso1 / p115 like vesicle tethering protein, head region; InterPro: IPR006953 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associated protein (TAP) or Vesicle docking protein, this myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []

Probab=83.57  E-value=34  Score=31.02  Aligned_cols=145  Identities=21%  Similarity=0.257  Sum_probs=95.3

Q ss_pred             CHHHHHHHHHHHHHhhcCChhhHHHHHhc-------C----CHHHHHHhhc------CCCHHHHHHHHHHHHHhhcCChh
Q 015851          220 DTKVQRAAAGALRTLAFKNDENKNQIVEC-------N----ALPTLILMLR------SEDSAIHYEAVGVIGNLVHSSPN  282 (399)
Q Consensus       220 ~~~v~~~a~~~L~~L~~~~~~~~~~~~~~-------~----~~~~L~~ll~------~~~~~v~~~a~~~L~~l~~~~~~  282 (399)
                      ...+|.+|+.++.....++++.+..+++.       +    ....+...|-      +.|+--.+.|+.+|..+..+++.
T Consensus        51 ~f~lR~AA~~c~kay~~~N~~~q~~~l~~~i~~~~~~~~~~~~~nl~~~Ll~~~~~~~~dpy~~wfAa~il~hll~dn~~  130 (312)
T PF04869_consen   51 PFDLRCAALYCFKAYFYNNEEGQTAFLSTLIPSYASGNSDDPIANLLTALLDYDSDLSLDPYRCWFAAVILMHLLRDNPE  130 (312)
T ss_dssp             -HHHHHHHHHHHHHHHTT-HHHHHHHHHTTSSTT--SS--SSSS-HHHHHT------SS-HHHHHHHHHHHHHHHTT-HH
T ss_pred             chHHHHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCcccchhhHHHHHHHHhhccccCCHHHHHHHHHHHHHHHhcCHH
Confidence            46889999999999998888888777652       0    1112444443      33565677899999999988777


Q ss_pred             HHHHHHHC------------CCcHHHHHhhcC-----CChHHHHHHHHHHHHhhccChhhHHHHHh-cCCHHHHHHhhC-
Q 015851          283 IKKEVLAA------------GALQPVIGLLSS-----CCSESQREAALLLGQFAATDSDCKVHIVQ-RGAVRPLIEMLQ-  343 (399)
Q Consensus       283 ~~~~~~~~------------~~l~~L~~lL~~-----~~~~v~~~a~~~L~~l~~~~~~~~~~l~~-~g~v~~L~~ll~-  343 (399)
                      .+..+..-            ..++.+..+|..     .++.++..-+..|.-....++.....+.. .+.++.|+.... 
T Consensus       131 ~Ke~al~V~~~~~~~ge~~vtliq~v~~lL~~~l~~~~d~ri~igyL~LL~~WL~e~p~AV~~FL~~~s~l~~Li~~~~~  210 (312)
T PF04869_consen  131 AKEQALRVTEGDESSGEEPVTLIQTVSELLIASLRRNSDPRIQIGYLMLLIVWLFECPDAVNDFLSEGSNLQSLIEFSNQ  210 (312)
T ss_dssp             HHHHHTT--EE--STTS--EEHHHHHHHHTTT----T--HHHHHHHHHHHHHHHTT-HHHHHHHHCSTTHHHHHHHHHS-
T ss_pred             HHHHHHcccCCCCCCCCCcccHHHHHHHHHHhhhhcCCchhHHHHHHHHHHHHHhCCHHHHHHHHcCcchHHHHHHHhhc
Confidence            76665432            145556666543     35566666666777777777877776665 468899999763 


Q ss_pred             --CCCHHHHHHHHHHHHHhhccC
Q 015851          344 --SPDVQLREMSAFALGRLAQVI  364 (399)
Q Consensus       344 --~~~~~v~~~a~~~L~~l~~~~  364 (399)
                        +.+.-|+-.++..|+.+.+.+
T Consensus       211 ~~~~~~~VqGL~A~LLGicyef~  233 (312)
T PF04869_consen  211 SSSEDVLVQGLCAFLLGICYEFS  233 (312)
T ss_dssp             -TCCCHHHHHHHHHHHHHHHHT-
T ss_pred             CCCCcchHHHHHHHHHHHHHHhc
Confidence              457778888888888887744

p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the head region. The head region is highly conserved, but its function is unknown. It does not seem to be essential for vesicle tethering []. The N-terminal part of the head region contains context-detected Armadillo/beta-catenin-like repeats.; GO: 0006886 intracellular protein transport, 0048280 vesicle fusion with Golgi apparatus, 0000139 Golgi membrane, 0005737 cytoplasm; PDB: 2W3C_A 3GRL_A 3GQ2_A.

>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter

Probab=83.47  E-value=21  Score=29.41  Aligned_cols=75  Identities=17%  Similarity=0.137  Sum_probs=52.5

Q ss_pred             CCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHHCCCcHHHHHhhcCCChHHHHHHHHHHHHhhccCh
Q 015851          249 NALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDS  323 (399)
Q Consensus       249 ~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~  323 (399)
                      ..+|.+..=|...+...+..|...+..+.......+-..+-...+.++...|++.++++...++.+|..++..++
T Consensus        38 ~~Lpif~dGL~Et~~Py~flA~~g~~dll~~~~~~kilPvlPqLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~~~  112 (183)
T PF10274_consen   38 HYLPIFFDGLRETEHPYRFLARQGIKDLLERGGGEKILPVLPQLIIPLKRALNTRDPEVFCATLKALQQLVTSSD  112 (183)
T ss_pred             hHHHHHHhhhhccCccHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhh
Confidence            457777777777666666677777777664412222233335677788888999999999999999999965444

The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.

>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule)

Probab=83.45  E-value=10  Score=29.42  Aligned_cols=75  Identities=12%  Similarity=0.084  Sum_probs=61.1

Q ss_pred             CcHHHHHhhcCCChHHHHHHHHHHHHhhccChh-hHHHHHhcCCHHHHHHhhCC---CCHHHHHHHHHHHHHhhccCCC
Q 015851          292 ALQPVIGLLSSCCSESQREAALLLGQFAATDSD-CKVHIVQRGAVRPLIEMLQS---PDVQLREMSAFALGRLAQVITV  366 (399)
Q Consensus       292 ~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~-~~~~l~~~g~v~~L~~ll~~---~~~~v~~~a~~~L~~l~~~~~~  366 (399)
                      ++..|.+-|+++++.++..|+..|-.+...... ....+....++..|++++..   .++.|+..+...+...+...++
T Consensus        38 a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~~~f~~  116 (133)
T cd03561          38 AARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWSESFGG  116 (133)
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence            577888888999999999999999988876544 45566666788889999864   5889999999999999987665

It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me

>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]

Probab=83.44  E-value=9.7  Score=38.15  Aligned_cols=147  Identities=15%  Similarity=0.147  Sum_probs=95.4

Q ss_pred             cCCHHHHHHhhcC--------CCHHHHHHHHHHHHHhhc--CChhHHHHHHHCCCcHHHHHhhcCCChHHHHHHHHHHHH
Q 015851          248 CNALPTLILMLRS--------EDSAIHYEAVGVIGNLVH--SSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQ  317 (399)
Q Consensus       248 ~~~~~~L~~ll~~--------~~~~v~~~a~~~L~~l~~--~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~  317 (399)
                      .|+++-+...|..        +++.-.+.|++.++++..  ..+.....+.+.=+++.++..++++.--.+..||..++.
T Consensus       407 qgiLsf~~sil~qsaa~psn~dnarq~egalr~lasi~s~itk~sp~an~me~fiv~hv~P~f~s~ygfL~Srace~is~  486 (970)
T COG5656         407 QGILSFLLSILGQSAATPSNIDNARQAEGALRLLASIKSFITKMSPAANVMEYFIVNHVIPAFRSNYGFLKSRACEFIST  486 (970)
T ss_pred             hhHHHHHHHHHhcccCCCCccccHHHHhhHHHHHHHHHHHhccCchHHHHHHHHHHHHhhHhhcCcccchHHHHHHHHHH
Confidence            4678888888832        223444566777777653  222333444444567777778888877899999999998


Q ss_pred             hhccChhhHHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhccCCCC-----cchhHH-HHHh-hccccHHHHHHHH
Q 015851          318 FAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQVITVS-----VLPAIL-IFII-INECQLEVLAFVL  390 (399)
Q Consensus       318 l~~~~~~~~~~l~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~-----~~~~~~-~~~~-~~~~~~~~~~~~l  390 (399)
                      +..   +-...-.-..+.+...+++++++-.|+-.|+-|+.-+..+..-+     .+|..+ +++. ..+-+++++..+.
T Consensus       487 ~ee---Dfkd~~ill~aye~t~ncl~nn~lpv~ieAalAlq~fi~~~q~h~k~sahVp~tmekLLsLSn~feiD~LS~vM  563 (970)
T COG5656         487 IEE---DFKDNGILLEAYENTHNCLKNNHLPVMIEAALALQFFIFNEQSHEKFSAHVPETMEKLLSLSNTFEIDPLSMVM  563 (970)
T ss_pred             HHH---hcccchHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHhchhhhHHHHhhhhHHHHHHHHhcccccchHHHHHH
Confidence            843   22222222334566777888888889999999999888777532     334443 4443 3444888888888


Q ss_pred             hhhHhhh
Q 015851          391 SEMVLLF  397 (399)
Q Consensus       391 ~~~~~~~  397 (399)
                      .+|+.-+
T Consensus       564 e~fVe~f  570 (970)
T COG5656         564 ESFVEYF  570 (970)
T ss_pred             HHHHHHh
Confidence            8877543

>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting)

Probab=82.98  E-value=6.5  Score=31.01  Aligned_cols=75  Identities=16%  Similarity=0.127  Sum_probs=61.8

Q ss_pred             CcHHHHHhhcCCChHHHHHHHHHHHHhhccC-hhhHHHHHhcCCHHHHHHhhC-CCCHHHHHHHHHHHHHhhccCCC
Q 015851          292 ALQPVIGLLSSCCSESQREAALLLGQFAATD-SDCKVHIVQRGAVRPLIEMLQ-SPDVQLREMSAFALGRLAQVITV  366 (399)
Q Consensus       292 ~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~-~~~~~~l~~~g~v~~L~~ll~-~~~~~v~~~a~~~L~~l~~~~~~  366 (399)
                      ++..|.+-|.++++.++..|+..|-.+.... ......+.+.+++..|.+++. ..++.|+..+...+...+....+
T Consensus        42 a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f~~  118 (142)
T cd03569          42 AMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWALAFRN  118 (142)
T ss_pred             HHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHHHhCC
Confidence            5777888888899999999999888887653 445667778889999999996 57889999999999999976654

The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.

>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule)

Probab=82.51  E-value=8.2  Score=30.02  Aligned_cols=72  Identities=11%  Similarity=0.144  Sum_probs=57.8

Q ss_pred             CHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChh-HHHHHHHCCCcHHHHHhhcC---CChHHHHHHHHHHHHhhcc
Q 015851          250 ALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPN-IKKEVLAAGALQPVIGLLSS---CCSESQREAALLLGQFAAT  321 (399)
Q Consensus       250 ~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~-~~~~~~~~~~l~~L~~lL~~---~~~~v~~~a~~~L~~l~~~  321 (399)
                      ++..|.+-|.++++.++..|+.+|-.+..+... ....+.+..++..|+.++..   .++.++..+...+.+.+..
T Consensus        38 a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~~~  113 (133)
T cd03561          38 AARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWSES  113 (133)
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHH
Confidence            466788888899999999999999999876544 55556666888889999875   4678999999988888753

It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me

>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins

Probab=81.73  E-value=9.4  Score=29.97  Aligned_cols=75  Identities=9%  Similarity=0.021  Sum_probs=61.0

Q ss_pred             CcHHHHHhhcCCChHHHHHHHHHHHHhhccC-hhhHHHHHhcCCHHHHHHhhCC------CCHHHHHHHHHHHHHhhccC
Q 015851          292 ALQPVIGLLSSCCSESQREAALLLGQFAATD-SDCKVHIVQRGAVRPLIEMLQS------PDVQLREMSAFALGRLAQVI  364 (399)
Q Consensus       292 ~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~-~~~~~~l~~~g~v~~L~~ll~~------~~~~v~~~a~~~L~~l~~~~  364 (399)
                      ++..+.+-|+++++.++..|+..|-.+.... ......+...+++..|++++..      .+..|+..+...+...+...
T Consensus        39 a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~f  118 (139)
T cd03567          39 AVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTKIIELLYSWTLEL  118 (139)
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHHHh
Confidence            5677888888999999999999888887643 4556777788889999999952      57899999999999999766


Q ss_pred             CC
Q 015851          365 TV  366 (399)
Q Consensus       365 ~~  366 (399)
                      ++
T Consensus       119 ~~  120 (139)
T cd03567         119 PH  120 (139)
T ss_pred             cc
Confidence            53

The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.

>KOG1949 consensus Uncharacterized conserved protein [Function unknown]

Probab=81.36  E-value=8.1  Score=38.38  Aligned_cols=148  Identities=14%  Similarity=0.097  Sum_probs=93.4

Q ss_pred             HHHHHhhcCCCHHHHHHHHHHHHHhhcC-Chhh----HHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHH
Q 015851          210 PPLVELLEFTDTKVQRAAAGALRTLAFK-NDEN----KNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIK  284 (399)
Q Consensus       210 ~~L~~ll~~~~~~v~~~a~~~L~~L~~~-~~~~----~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~  284 (399)
                      |.|..-|+-.|..+|..|+..+.++--- .|+.    ...+++. -...|.++|+++-+.+|..|..-+..+...   . 
T Consensus       177 p~l~R~L~a~Ns~VrsnAa~lf~~~fP~~dpd~~~e~mD~i~~k-Qf~~l~~LL~d~~p~VRS~a~~gv~k~~s~---f-  251 (1005)
T KOG1949|consen  177 PILWRGLKARNSEVRSNAALLFVEAFPIRDPDLHAEEMDSIIQK-QFEELYSLLEDPYPMVRSTAILGVCKITSK---F-  251 (1005)
T ss_pred             HHHHHhhccCchhhhhhHHHHHHHhccCCCCCccHHHHHHHHHH-HHHHHHHHhcCCCchHHHHHHHHHHHHHHH---H-
Confidence            5566667888999999999999887631 2222    2223332 356788999999999999888777666421   1 


Q ss_pred             HHHHHCC----CcHHHHHhhc-CCChHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHH
Q 015851          285 KEVLAAG----ALQPVIGLLS-SCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGR  359 (399)
Q Consensus       285 ~~~~~~~----~l~~L~~lL~-~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~  359 (399)
                      -.++-..    .+..++.-+. ....++|......|..+.. +|..-. +.+. ++|.|-..|++++..||.+++..|..
T Consensus       252 We~iP~~i~~~ll~kI~d~~a~dt~s~VR~svf~gl~~~l~-np~sh~-~le~-~Lpal~~~l~D~se~VRvA~vd~ll~  328 (1005)
T KOG1949|consen  252 WEMIPPTILIDLLKKITDELAFDTSSDVRCSVFKGLPMILD-NPLSHP-LLEQ-LLPALRYSLHDNSEKVRVAFVDMLLK  328 (1005)
T ss_pred             HHHcCHHHHHHHHHHHHHHhhhccchheehhHhcCcHHHHc-Cccchh-HHHH-HHHhcchhhhccchhHHHHHHHHHHH
Confidence            1111111    2222332232 3444788888888888874 343322 2222 35677777888899999999988887


Q ss_pred             hhccCC
Q 015851          360 LAQVIT  365 (399)
Q Consensus       360 l~~~~~  365 (399)
                      +-..-.
T Consensus       329 ik~vra  334 (1005)
T KOG1949|consen  329 IKAVRA  334 (1005)
T ss_pred             HHhhhh
Confidence            764433

>KOG4464 consensus Signaling protein RIC-8/synembryn (regulates neurotransmitter secretion) [Signal transduction mechanisms]

Probab=81.04  E-value=28  Score=32.43  Aligned_cols=156  Identities=13%  Similarity=0.080  Sum_probs=92.2

Q ss_pred             HHHHHhhcCCC-HHHHHHHHHHHHHhhcCChhhHHHHHhcCCHHHHHHhhc----------CCCHHHHHHHHHHHHHhhc
Q 015851          210 PPLVELLEFTD-TKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLR----------SEDSAIHYEAVGVIGNLVH  278 (399)
Q Consensus       210 ~~L~~ll~~~~-~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~L~~ll~----------~~~~~v~~~a~~~L~~l~~  278 (399)
                      ..+...|.++. +..+...+.++.-|+. ....-..+.....+..|+.+..          ..+..+..+++.+|.|+..
T Consensus        48 e~i~~Vle~~~p~t~~v~~LetvrILSR-dk~~L~~~~~~q~~~~ll~~A~ls~~e~sl~~v~d~~vi~EslKCLcNlvf  126 (532)
T KOG4464|consen   48 ERIFEVLENGEPLTHRVVCLETVRILSR-DKDGLEPLTNDQLCQKLLALAELSSNENSLPTVADMHVIMESLKCLCNLVF  126 (532)
T ss_pred             HHHHHHHhcCCCchhhhhHHHHHHHHhc-cccccccccchHHHHHHHHHHHhccccCCCCcccchHHHHHHHHHHHHHHh
Confidence            44566666655 4455666666766665 2333222222223333443322          1345889999999999999


Q ss_pred             CChhHHHHHHHCCCcHHHHHhhcCC-----ChHHHHHHHHHHHHhhccChhhHHHH-HhcCCHHHHHHhhCC--------
Q 015851          279 SSPNIKKEVLAAGALQPVIGLLSSC-----CSESQREAALLLGQFAATDSDCKVHI-VQRGAVRPLIEMLQS--------  344 (399)
Q Consensus       279 ~~~~~~~~~~~~~~l~~L~~lL~~~-----~~~v~~~a~~~L~~l~~~~~~~~~~l-~~~g~v~~L~~ll~~--------  344 (399)
                      +++..+...........+.+.+...     ...+...-...|.-++.-..+.+..+ .+.++++.+.+.+.+        
T Consensus       127 ~Sq~~q~~~~~~~~~~~ll~~v~~~~er~~~~~~~~~dlrLLflltale~~~Rsql~~~l~Gl~~lt~~led~lgidse~  206 (532)
T KOG4464|consen  127 HSQRAQDLFLENPLTGKLLQRVLGEFERNFPKDSSIFDLRLLFLLTALETDHRSQLIAELLGLELLTNWLEDKLGIDSEI  206 (532)
T ss_pred             ccHHHHHHHHhhhhHHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHhhHHHHHHHHHHhcccHHHHHHhhccccCCCCc
Confidence            9888888888888777777665321     11233333334444443345565554 568888999888853        


Q ss_pred             -CC------HHHHHHHHHHHHHhhccCCC
Q 015851          345 -PD------VQLREMSAFALGRLAQVITV  366 (399)
Q Consensus       345 -~~------~~v~~~a~~~L~~l~~~~~~  366 (399)
                       ..      ......+..++.|+..++..
T Consensus       207 n~~~l~pqe~n~a~EaLK~~FNvt~~~~k  235 (532)
T KOG4464|consen  207 NVPPLNPQETNRACEALKVFFNVTCDSDK  235 (532)
T ss_pred             CCCCCCHHHHHHHHHHHHHHhheeecccc
Confidence             11      12445666677777776664

>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein)

Probab=80.95  E-value=8.5  Score=30.43  Aligned_cols=71  Identities=14%  Similarity=0.233  Sum_probs=59.0

Q ss_pred             CHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCh-hHHHHHHHCCCcHHHHHhhcC-CChHHHHHHHHHHHHhhc
Q 015851          250 ALPTLILMLRSEDSAIHYEAVGVIGNLVHSSP-NIKKEVLAAGALQPVIGLLSS-CCSESQREAALLLGQFAA  320 (399)
Q Consensus       250 ~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~-~~~~~~~~~~~l~~L~~lL~~-~~~~v~~~a~~~L~~l~~  320 (399)
                      ++..|.+-+.+.++.++..|+..|-.++.+.. .....+.+.+++..|..++.. .++.|+..+...|...+.
T Consensus        38 a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~~  110 (144)
T cd03568          38 CLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQWAD  110 (144)
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHH
Confidence            56678888889999999999999999986544 455677788899999999987 777999999998888864

Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.

>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting)

Probab=80.56  E-value=8.2  Score=30.45  Aligned_cols=71  Identities=17%  Similarity=0.218  Sum_probs=58.3

Q ss_pred             CHHHHHHhhcCCCHHHHHHHHHHHHHhhcCC-hhHHHHHHHCCCcHHHHHhhc-CCChHHHHHHHHHHHHhhc
Q 015851          250 ALPTLILMLRSEDSAIHYEAVGVIGNLVHSS-PNIKKEVLAAGALQPVIGLLS-SCCSESQREAALLLGQFAA  320 (399)
Q Consensus       250 ~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~-~~~~~~~~~~~~l~~L~~lL~-~~~~~v~~~a~~~L~~l~~  320 (399)
                      ++..|.+-|.++++.++..|+..|-.+..+. ......+.+.++++.|..++. ..++.|+..++..+...+.
T Consensus        42 a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~  114 (142)
T cd03569          42 AMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWAL  114 (142)
T ss_pred             HHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHH
Confidence            5667888888999999999999999988653 445667778889999999987 5677899999988888774

The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.

>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein)

Probab=80.16  E-value=9.2  Score=30.23  Aligned_cols=75  Identities=15%  Similarity=0.134  Sum_probs=62.5

Q ss_pred             CcHHHHHhhcCCChHHHHHHHHHHHHhhccCh-hhHHHHHhcCCHHHHHHhhCC-CCHHHHHHHHHHHHHhhccCCC
Q 015851          292 ALQPVIGLLSSCCSESQREAALLLGQFAATDS-DCKVHIVQRGAVRPLIEMLQS-PDVQLREMSAFALGRLAQVITV  366 (399)
Q Consensus       292 ~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~-~~~~~l~~~g~v~~L~~ll~~-~~~~v~~~a~~~L~~l~~~~~~  366 (399)
                      ++..|.+-|.++++.++..|+..|-.+..... .....+...+++..|.+++.. .++.|+..+...+...+....+
T Consensus        38 a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~~~f~~  114 (144)
T cd03568          38 CLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQWADEFKN  114 (144)
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHhCC
Confidence            56777777888999999999998888886543 455677788899999999976 7999999999999999976664

Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.

>KOG2549 consensus Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=80.07  E-value=25  Score=34.00  Aligned_cols=118  Identities=15%  Similarity=0.132  Sum_probs=76.4

Q ss_pred             cHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhhc----------CCCHHHHHHH
Q 015851          158 ALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLE----------FTDTKVQRAA  227 (399)
Q Consensus       158 ~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~----------~~~~~v~~~a  227 (399)
                      .+|+++.++...-.......+.++....+...+.|. +++.+.-..+-+..+|.++.++-          ++...+|..|
T Consensus       240 LlPyFv~fIae~vs~ni~~~nL~lL~~lm~m~rSLl-~Np~i~lepYlh~L~PSvlTCvVsk~l~~~p~~dnhwaLRDfA  318 (576)
T KOG2549|consen  240 LLPYFVTFIAEGVSVNIVQNNLELLIYLMRMVRSLL-DNPNIFLEPYLHQLVPSVLTCVVSKNLCLRPELDNHWALRDFA  318 (576)
T ss_pred             HHHHHHHHHhhheeeccccccHHHHHHHHHHHHHHh-cCCccchhhHHHHHhhHHHHhhhhhhccCCccccchHHHHHHH
Confidence            567777777654322111122367777888888888 67776555555677887777652          2347799999


Q ss_pred             HHHHHHhhcCChhhHHHHHhcCCHHHHHHhhcCC--CHHHHHHHHHHHHHhh
Q 015851          228 AGALRTLAFKNDENKNQIVECNALPTLILMLRSE--DSAIHYEAVGVIGNLV  277 (399)
Q Consensus       228 ~~~L~~L~~~~~~~~~~~~~~~~~~~L~~ll~~~--~~~v~~~a~~~L~~l~  277 (399)
                      +..+..++....+.... ....++..+.+.+.++  ......-++..|..+.
T Consensus       319 A~ll~~i~k~f~~~y~~-L~~Rit~tl~k~l~D~~~~~st~YGai~gL~~lg  369 (576)
T KOG2549|consen  319 ARLLAQICKNFSTLYNN-LQPRITRTLSKALLDNKKPLSTHYGAIAGLSELG  369 (576)
T ss_pred             HHHHHHHHHhhhhHHHH-HHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHhh
Confidence            99999999754433333 5556777788777664  4466666666666664

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	399
4hxt_A	252	Crystal Structure Of Engineered Protein. Northeast		4e-18
4hxt_A	252	Crystal Structure Of Engineered Protein. Northeast		2e-17
4hxt_A	252	Crystal Structure Of Engineered Protein. Northeast		7e-04
3tpm_A	422	Crystal Structure Of Mal Rpel Domain In Complex Wit		6e-13
3tpm_A	422	Crystal Structure Of Mal Rpel Domain In Complex Wit		4e-06
2c1m_A	424	Nup50:importin-Alpha Complex Length = 424		6e-13
2c1m_A	424	Nup50:importin-Alpha Complex Length = 424		4e-06
3ve6_A	426	Crystal Structure Analysis Of Venezuelan Equine Enc		6e-13
3ve6_A	426	Crystal Structure Analysis Of Venezuelan Equine Enc		4e-06
3l3q_A	427	Mouse Importin Alpha-Peptm Nls Peptide Complex Leng		6e-13
3l3q_A	427	Mouse Importin Alpha-Peptm Nls Peptide Complex Leng		4e-06
3btr_C	427	Ar-Nls:importin-Alpha Complex Length = 427		6e-13
3btr_C	427	Ar-Nls:importin-Alpha Complex Length = 427		4e-06
1ial_A	453	Importin Alpha, Mouse Length = 453		7e-13
1ial_A	453	Importin Alpha, Mouse Length = 453		3e-06
1y2a_C	428	Structure Of Mammalian Importin Bound To The Non-Cl		7e-13
1y2a_C	428	Structure Of Mammalian Importin Bound To The Non-Cl		4e-06
1ejl_I	460	Mouse Importin Alpha-Sv40 Large T Antigen Nls Pepti		7e-13
1ejl_I	460	Mouse Importin Alpha-Sv40 Large T Antigen Nls Pepti		3e-06
2ynr_A	461	Mimp_alphadibb_b54nls Length = 461		8e-13
2ynr_A	461	Mimp_alphadibb_b54nls Length = 461		3e-06
1q1s_C	466	Mouse Importin Alpha- Phosphorylated Sv40 Cn Peptid		8e-13
1q1s_C	466	Mouse Importin Alpha- Phosphorylated Sv40 Cn Peptid		3e-06
4ba3_A	496	Mimp_alphadibb_a89nls Length = 496		9e-13
4ba3_A	496	Mimp_alphadibb_a89nls Length = 496		3e-06
3ukw_B	510	Mouse Importin Alpha: Bimax1 Peptide Complex Length		9e-13
3ukw_B	510	Mouse Importin Alpha: Bimax1 Peptide Complex Length		3e-06
4htv_A	509	Mouse Importin Alpha: Bfdv Cap Nls Peptide Complex		1e-12
4htv_A	509	Mouse Importin Alpha: Bfdv Cap Nls Peptide Complex		3e-06
3rz9_A	510	Mouse Importin Alpha-Ku80 Nls Peptide Complex Lengt		1e-12
3rz9_A	510	Mouse Importin Alpha-Ku80 Nls Peptide Complex Lengt		3e-06
3tpo_A	529	Crystal Structure Of D192aE396A MUTANT OF MOUSE IMP		1e-12
3tpo_A	529	Crystal Structure Of D192aE396A MUTANT OF MOUSE IMP		2e-06
4db8_A	252	Designed Armadillo-Repeat Protein Length = 252		6e-12
4db8_A	252	Designed Armadillo-Repeat Protein Length = 252		1e-11
3fex_C	467	Crystal Structure Of The Cbc-Importin Alpha Complex		2e-11
3fex_C	467	Crystal Structure Of The Cbc-Importin Alpha Complex		6e-07
4b8j_A	528	Rimp_alpha1a Length = 528		8e-11
4b8j_A	528	Rimp_alpha1a Length = 528		3e-07
2yns_A	490	Rimp_alpha_b54nls Length = 490		9e-11
2yns_A	490	Rimp_alpha_b54nls Length = 490		5e-07
4db6_A	210	Designed Armadillo Repeat Protein (Yiiim3aii) Lengt		2e-10
4db6_A	210	Designed Armadillo Repeat Protein (Yiiim3aii) Lengt		4e-09
4db9_A	210	Designed Armadillo Repeat Protein (Yiiim3aiii) Leng		3e-10
4db9_A	210	Designed Armadillo Repeat Protein (Yiiim3aiii) Leng		3e-09
4dba_A	210	Designed Armadillo Repeat Protein (Yiim3aii) Length		4e-09
4dba_A	210	Designed Armadillo Repeat Protein (Yiim3aii) Length		1e-08
3l6x_A	584	Crystal Structure Of P120 Catenin In Complex With E		1e-08
2jdq_A	450	C-Terminal Domain Of Influenza A Virus Polymerase P		1e-07
3tj3_A	447	Structure Of Importin A5 Bound To The N-Terminus Of		1e-07
1xm9_A	457	Structure Of The Armadillo Repeat Domain Of Plakoph		1e-07
1un0_A	443	Crystal Structure Of Yeast Karyopherin (Importin) A		2e-07
1ee5_A	424	Yeast Karyopherin (Importin) Alpha In A Complex Wit		2e-07
1ee4_A	423	Crystal Structure Of Yeast Karyopherin (Importin) A		2e-07
2c1t_A	454	Structure Of The Kap60p:nup2 Complex Length = 454		2e-07
1wa5_B	530	Crystal Structure Of The Exportin Cse1p Complexed W		1e-05
1wa5_B	530	Crystal Structure Of The Exportin Cse1p Complexed W		6e-04
1bk6_A	422	Karyopherin Alpha (Yeast) + Sv40 T Antigen Nls Leng		1e-05
1bk6_A	422	Karyopherin Alpha (Yeast) + Sv40 T Antigen Nls Leng		5e-04
1bk5_A	422	Karyopherin Alpha From Saccharomyces Cerevisiae Len		1e-05
1bk5_A	422	Karyopherin Alpha From Saccharomyces Cerevisiae Len		5e-04
3tt9_A	233	Crystal Structure Of The Stable Degradation Fragmen		2e-05
2z6g_A	780	Crystal Structure Of A Full-Length Zebrafish Beta-C		3e-04
3ltm_A	211	Structure Of A New Family Of Artificial Alpha Helic		6e-04

>pdb|4HXT|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or329 Length = 252

Iteration: 1
 Score = 89.0 bits (219), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 77/235 (32%), Positives = 118/235 (50%), Gaps = 11/235 (4%)
Query: 125 LKPFEHEVEKGSAFALGLLAVKPEHQ-QLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIR 183
           L   + E +K +A  L  +A  P    + IVD G +  LV LL    DS        V +
Sbjct: 11  LTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLL-TSTDSE-------VQK 62
Query: 184 RAADAITNLAHE-NSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENK 242
            AA A+ N+A   + +IK  V   GG+  LV+LL  TD++VQ+ AA AL  +A   DE  
Sbjct: 63  EAARALANIASGPDEAIKAIVDA-GGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAI 121
Query: 243 NQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSS 302
             IV+   +  L+ +L S DS +  EA   + N+        K ++ AG ++ ++ LL+S
Sbjct: 122 KAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTS 181
Query: 303 CCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFAL 357
             SE Q+EAA  L   A+  +     IV  G V  L ++L S D ++++ +  AL
Sbjct: 182 TDSEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQKLLTSTDSEVQKEAQRAL 236

>pdb|4HXT|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or329 Length = 252

Iteration: 1
 Score = 86.7 bits (213), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 64/195 (32%), Positives = 102/195 (52%), Gaps = 7/195 (3%)
Query: 197 SSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLIL 256
           S+IK  V   GG+  LV+LL  TD++VQ+ AA AL  +A   DE    IV+   +  L+ 
Sbjct: 35  SAIKAIVDA-GGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVK 93
Query: 257 MLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLG 316
           +L S DS +  EA   + N+        K ++ AG ++ ++ LL+S  SE Q+EAA  L 
Sbjct: 94  LLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALA 153
Query: 317 QFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQVITVSVLPAILIFI 376
             A+   +    IV  G V  L+++L S D ++++ +A AL  +A        P   I  
Sbjct: 154 NIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASG------PTSAIKA 207
Query: 377 IINECQLEVLAFVLS 391
           I++   +EVL  +L+
Sbjct: 208 IVDAGGVEVLQKLLT 222

>pdb|4HXT|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or329 Length = 252

Iteration: 1
 Score = 41.6 bits (96), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 30/99 (30%), Positives = 54/99 (54%), Gaps = 6/99 (6%)
Query: 293 LQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREM 352
           ++ ++ LL+S  SE+Q+EAA  L + A+  +     IV  G V  L+++L S D ++++ 
Sbjct: 4   VEKLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKE 63
Query: 353 SAFALGRLAQVITVSVLPAILIFIIINECQLEVLAFVLS 391
           +A AL  +A        P   I  I++   +EVL  +L+
Sbjct: 64  AARALANIASG------PDEAIKAIVDAGGVEVLVKLLT 96

>pdb|3TPM|A Chain A, Crystal Structure Of Mal Rpel Domain In Complex With Importin-Alpha Length = 422

Iteration: 1
 Score = 72.0 bits (175), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 63/258 (24%), Positives = 117/258 (45%), Gaps = 14/258 (5%)
Query: 100 IVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIVDNGAL 159
           +V+GGA+PA +  L +P    +++ +    +    GSAF           + L++ +GA+
Sbjct: 84  VVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAF-----------RDLVIKHGAI 132
Query: 160 SHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFT 219
             L+ LL      + S      +R     ++NL    +       +E  +P LV LL   
Sbjct: 133 DPLLALLAV---PDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHN 189
Query: 220 DTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHS 279
           D +V   +  A+  L    +E    +V+   +P L+ +L + +  I   A+  IGN+V  
Sbjct: 190 DPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTG 249
Query: 280 SPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLI 339
           +    ++V+ AGAL     LL++  +  Q+EA   +    A   D    +V  G V  L+
Sbjct: 250 TDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLV 309
Query: 340 EMLQSPDVQLREMSAFAL 357
            +L   D + ++ +A+A+
Sbjct: 310 GVLSKADFKTQKEAAWAI 327

>pdb|3TPM|A Chain A, Crystal Structure Of Mal Rpel Domain In Complex With Importin-Alpha Length = 422

Iteration: 1
 Score = 49.3 bits (116), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 32/119 (26%), Positives = 54/119 (45%), Gaps = 6/119 (5%)
Query: 243 NQIVECNALPTLILMLRSED-SAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLS 301
           + I+    +P  +  L   D S I +E+   + N+   +    K V+  GA+   I LL+
Sbjct: 39  DNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLA 98
Query: 302 SCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRL 360
           S  +    +A   LG  A   S  +  +++ GA+ PL+ +L  PD     +S  A G L
Sbjct: 99  SPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPD-----LSTLACGYL 152

>pdb|2C1M|A Chain A, Nup50:importin-Alpha Complex Length = 424

Iteration: 1
 Score = 72.0 bits (175), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 63/258 (24%), Positives = 117/258 (45%), Gaps = 14/258 (5%)
Query: 100 IVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIVDNGAL 159
           +V+GGA+PA +  L +P    +++ +    +    GSAF           + L++ +GA+
Sbjct: 84  VVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAF-----------RDLVIKHGAI 132
Query: 160 SHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFT 219
             L+ LL      + S      +R     ++NL    +       +E  +P LV LL   
Sbjct: 133 DPLLALLAV---PDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHN 189
Query: 220 DTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHS 279
           D +V   +  A+  L    +E    +V+   +P L+ +L + +  I   A+  IGN+V  
Sbjct: 190 DPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTG 249
Query: 280 SPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLI 339
           +    ++V+ AGAL     LL++  +  Q+EA   +    A   D    +V  G V  L+
Sbjct: 250 TDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLV 309
Query: 340 EMLQSPDVQLREMSAFAL 357
            +L   D + ++ +A+A+
Sbjct: 310 GVLSKADFKTQKEAAWAI 327

>pdb|2C1M|A Chain A, Nup50:importin-Alpha Complex Length = 424

Iteration: 1
 Score = 49.3 bits (116), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 32/119 (26%), Positives = 54/119 (45%), Gaps = 6/119 (5%)
Query: 243 NQIVECNALPTLILMLRSED-SAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLS 301
           + I+    +P  +  L   D S I +E+   + N+   +    K V+  GA+   I LL+
Sbjct: 39  DNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLA 98
Query: 302 SCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRL 360
           S  +    +A   LG  A   S  +  +++ GA+ PL+ +L  PD     +S  A G L
Sbjct: 99  SPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPD-----LSTLACGYL 152

>pdb|3VE6|A Chain A, Crystal Structure Analysis Of Venezuelan Equine Encephalitis Virus Capsid Protein Nls And Importin Alpha Length = 426

Iteration: 1
 Score = 71.6 bits (174), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 63/258 (24%), Positives = 117/258 (45%), Gaps = 14/258 (5%)
Query: 100 IVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIVDNGAL 159
           +V+GGA+PA +  L +P    +++ +    +    GSAF           + L++ +GA+
Sbjct: 88  VVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAF-----------RDLVIKHGAI 136
Query: 160 SHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFT 219
             L+ LL      + S      +R     ++NL    +       +E  +P LV LL   
Sbjct: 137 DPLLALLAV---PDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHN 193
Query: 220 DTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHS 279
           D +V   +  A+  L    +E    +V+   +P L+ +L + +  I   A+  IGN+V  
Sbjct: 194 DPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTG 253
Query: 280 SPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLI 339
           +    ++V+ AGAL     LL++  +  Q+EA   +    A   D    +V  G V  L+
Sbjct: 254 TDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLV 313
Query: 340 EMLQSPDVQLREMSAFAL 357
            +L   D + ++ +A+A+
Sbjct: 314 GVLSKADFKTQKEAAWAI 331

>pdb|3VE6|A Chain A, Crystal Structure Analysis Of Venezuelan Equine Encephalitis Virus Capsid Protein Nls And Importin Alpha Length = 426

Iteration: 1
 Score = 49.3 bits (116), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 32/119 (26%), Positives = 54/119 (45%), Gaps = 6/119 (5%)
Query: 243 NQIVECNALPTLILMLRSED-SAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLS 301
           + I+    +P  +  L   D S I +E+   + N+   +    K V+  GA+   I LL+
Sbjct: 43  DNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLA 102
Query: 302 SCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRL 360
           S  +    +A   LG  A   S  +  +++ GA+ PL+ +L  PD     +S  A G L
Sbjct: 103 SPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPD-----LSTLACGYL 156

>pdb|3L3Q|A Chain A, Mouse Importin Alpha-Peptm Nls Peptide Complex Length = 427

Iteration: 1
 Score = 71.6 bits (174), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 63/258 (24%), Positives = 117/258 (45%), Gaps = 14/258 (5%)
Query: 100 IVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIVDNGAL 159
           +V+GGA+PA +  L +P    +++ +    +    GSAF           + L++ +GA+
Sbjct: 88  VVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAF-----------RDLVIKHGAI 136
Query: 160 SHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFT 219
             L+ LL      + S      +R     ++NL    +       +E  +P LV LL   
Sbjct: 137 DPLLALLAV---PDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHN 193
Query: 220 DTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHS 279
           D +V   +  A+  L    +E    +V+   +P L+ +L + +  I   A+  IGN+V  
Sbjct: 194 DPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTG 253
Query: 280 SPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLI 339
           +    ++V+ AGAL     LL++  +  Q+EA   +    A   D    +V  G V  L+
Sbjct: 254 TDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLV 313
Query: 340 EMLQSPDVQLREMSAFAL 357
            +L   D + ++ +A+A+
Sbjct: 314 GVLSKADFKTQKEAAWAI 331

>pdb|3L3Q|A Chain A, Mouse Importin Alpha-Peptm Nls Peptide Complex Length = 427

Iteration: 1
 Score = 49.3 bits (116), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 32/119 (26%), Positives = 54/119 (45%), Gaps = 6/119 (5%)
Query: 243 NQIVECNALPTLILMLRSED-SAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLS 301
           + I+    +P  +  L   D S I +E+   + N+   +    K V+  GA+   I LL+
Sbjct: 43  DNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLA 102
Query: 302 SCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRL 360
           S  +    +A   LG  A   S  +  +++ GA+ PL+ +L  PD     +S  A G L
Sbjct: 103 SPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPD-----LSTLACGYL 156

>pdb|3BTR|C Chain C, Ar-Nls:importin-Alpha Complex Length = 427

Iteration: 1
 Score = 71.6 bits (174), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 63/258 (24%), Positives = 117/258 (45%), Gaps = 14/258 (5%)
Query: 100 IVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIVDNGAL 159
           +V+GGA+PA +  L +P    +++ +    +    GSAF           + L++ +GA+
Sbjct: 89  VVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAF-----------RDLVIKHGAI 137
Query: 160 SHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFT 219
             L+ LL      + S      +R     ++NL    +       +E  +P LV LL   
Sbjct: 138 DPLLALLAV---PDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHN 194
Query: 220 DTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHS 279
           D +V   +  A+  L    +E    +V+   +P L+ +L + +  I   A+  IGN+V  
Sbjct: 195 DPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTG 254
Query: 280 SPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLI 339
           +    ++V+ AGAL     LL++  +  Q+EA   +    A   D    +V  G V  L+
Sbjct: 255 TDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLV 314
Query: 340 EMLQSPDVQLREMSAFAL 357
            +L   D + ++ +A+A+
Sbjct: 315 GVLSKADFKTQKEAAWAI 332

>pdb|3BTR|C Chain C, Ar-Nls:importin-Alpha Complex Length = 427

Iteration: 1
 Score = 49.3 bits (116), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 32/119 (26%), Positives = 54/119 (45%), Gaps = 6/119 (5%)
Query: 243 NQIVECNALPTLILMLRSED-SAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLS 301
           + I+    +P  +  L   D S I +E+   + N+   +    K V+  GA+   I LL+
Sbjct: 44  DNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLA 103
Query: 302 SCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRL 360
           S  +    +A   LG  A   S  +  +++ GA+ PL+ +L  PD     +S  A G L
Sbjct: 104 SPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPD-----LSTLACGYL 157

>pdb|1IAL|A Chain A, Importin Alpha, Mouse Length = 453

Iteration: 1
 Score = 71.6 bits (174), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 65/267 (24%), Positives = 119/267 (44%), Gaps = 14/267 (5%)
Query: 100 IVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIVDNGAL 159
           +V+GGA+PA +  L +P    +++ +    +    GSAF           + L++ +GA+
Sbjct: 115 VVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAF-----------RDLVIKHGAI 163
Query: 160 SHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFT 219
             L+ LL      + S      +R     ++NL    +       +E  +P LV LL   
Sbjct: 164 DPLLALLAV---PDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHN 220
Query: 220 DTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHS 279
           D +V   +  A+  L    +E    +V+   +P L+ +L + +  I   A+  IGN+V  
Sbjct: 221 DPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTG 280
Query: 280 SPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLI 339
           +    ++V+ AGAL     LL++  +  Q+EA   +    A   D    +V  G V  L+
Sbjct: 281 TDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLV 340
Query: 340 EMLQSPDVQLREMSAFALGRLAQVITV 366
            +L   D + ++ +A+A+       TV
Sbjct: 341 GVLSKADFKTQKEAAWAITNYTSGGTV 367

>pdb|1IAL|A Chain A, Importin Alpha, Mouse Length = 453

Iteration: 1
 Score = 49.7 bits (117), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 32/119 (26%), Positives = 54/119 (45%), Gaps = 6/119 (5%)
Query: 243 NQIVECNALPTLILMLRSED-SAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLS 301
           + I+    +P  +  L   D S I +E+   + N+   +    K V+  GA+   I LL+
Sbjct: 70  DNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLA 129
Query: 302 SCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRL 360
           S  +    +A   LG  A   S  +  +++ GA+ PL+ +L  PD     +S  A G L
Sbjct: 130 SPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPD-----LSTLACGYL 183

>pdb|1Y2A|C Chain C, Structure Of Mammalian Importin Bound To The Non-Classical Plscr1-Nls Length = 428

Iteration: 1
 Score = 71.6 bits (174), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 65/267 (24%), Positives = 119/267 (44%), Gaps = 14/267 (5%)
Query: 100 IVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIVDNGAL 159
           +V+GGA+PA +  L +P    +++ +    +    GSAF           + L++ +GA+
Sbjct: 89  VVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAF-----------RDLVIKHGAI 137
Query: 160 SHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFT 219
             L+ LL      + S      +R     ++NL    +       +E  +P LV LL   
Sbjct: 138 DPLLALLAV---PDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHN 194
Query: 220 DTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHS 279
           D +V   +  A+  L    +E    +V+   +P L+ +L + +  I   A+  IGN+V  
Sbjct: 195 DPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTG 254
Query: 280 SPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLI 339
           +    ++V+ AGAL     LL++  +  Q+EA   +    A   D    +V  G V  L+
Sbjct: 255 TDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLV 314
Query: 340 EMLQSPDVQLREMSAFALGRLAQVITV 366
            +L   D + ++ +A+A+       TV
Sbjct: 315 GVLSKADFKTQKEAAWAITNYTSGGTV 341

>pdb|1Y2A|C Chain C, Structure Of Mammalian Importin Bound To The Non-Classical Plscr1-Nls Length = 428

Iteration: 1
 Score = 49.3 bits (116), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 32/119 (26%), Positives = 54/119 (45%), Gaps = 6/119 (5%)
Query: 243 NQIVECNALPTLILMLRSED-SAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLS 301
           + I+    +P  +  L   D S I +E+   + N+   +    K V+  GA+   I LL+
Sbjct: 44  DNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLA 103
Query: 302 SCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRL 360
           S  +    +A   LG  A   S  +  +++ GA+ PL+ +L  PD     +S  A G L
Sbjct: 104 SPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPD-----LSTLACGYL 157

>pdb|1EJL|I Chain I, Mouse Importin Alpha-Sv40 Large T Antigen Nls Peptide Complex Length = 460

Iteration: 1
 Score = 71.6 bits (174), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 65/267 (24%), Positives = 119/267 (44%), Gaps = 14/267 (5%)
Query: 100 IVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIVDNGAL 159
           +V+GGA+PA +  L +P    +++ +    +    GSAF           + L++ +GA+
Sbjct: 89  VVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAF-----------RDLVIKHGAI 137
Query: 160 SHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFT 219
             L+ LL      + S      +R     ++NL    +       +E  +P LV LL   
Sbjct: 138 DPLLALLAV---PDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHN 194
Query: 220 DTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHS 279
           D +V   +  A+  L    +E    +V+   +P L+ +L + +  I   A+  IGN+V  
Sbjct: 195 DPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTG 254
Query: 280 SPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLI 339
           +    ++V+ AGAL     LL++  +  Q+EA   +    A   D    +V  G V  L+
Sbjct: 255 TDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLV 314
Query: 340 EMLQSPDVQLREMSAFALGRLAQVITV 366
            +L   D + ++ +A+A+       TV
Sbjct: 315 GVLSKADFKTQKEAAWAITNYTSGGTV 341

>pdb|1EJL|I Chain I, Mouse Importin Alpha-Sv40 Large T Antigen Nls Peptide Complex Length = 460

Iteration: 1
 Score = 49.7 bits (117), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 32/119 (26%), Positives = 54/119 (45%), Gaps = 6/119 (5%)
Query: 243 NQIVECNALPTLILMLRSED-SAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLS 301
           + I+    +P  +  L   D S I +E+   + N+   +    K V+  GA+   I LL+
Sbjct: 44  DNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLA 103
Query: 302 SCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRL 360
           S  +    +A   LG  A   S  +  +++ GA+ PL+ +L  PD     +S  A G L
Sbjct: 104 SPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPD-----LSTLACGYL 157

>pdb|2YNR|A Chain A, Mimp_alphadibb_b54nls Length = 461

Iteration: 1
 Score = 71.6 bits (174), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 65/267 (24%), Positives = 119/267 (44%), Gaps = 14/267 (5%)
Query: 100 IVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIVDNGAL 159
           +V+GGA+PA +  L +P    +++ +    +    GSAF           + L++ +GA+
Sbjct: 123 VVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAF-----------RDLVIKHGAI 171
Query: 160 SHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFT 219
             L+ LL      + S      +R     ++NL    +       +E  +P LV LL   
Sbjct: 172 DPLLALLAV---PDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHN 228
Query: 220 DTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHS 279
           D +V   +  A+  L    +E    +V+   +P L+ +L + +  I   A+  IGN+V  
Sbjct: 229 DPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTG 288
Query: 280 SPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLI 339
           +    ++V+ AGAL     LL++  +  Q+EA   +    A   D    +V  G V  L+
Sbjct: 289 TDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLV 348
Query: 340 EMLQSPDVQLREMSAFALGRLAQVITV 366
            +L   D + ++ +A+A+       TV
Sbjct: 349 GVLSKADFKTQKEAAWAITNYTSGGTV 375

>pdb|2YNR|A Chain A, Mimp_alphadibb_b54nls Length = 461

Iteration: 1
 Score = 49.3 bits (116), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 32/119 (26%), Positives = 54/119 (45%), Gaps = 6/119 (5%)
Query: 243 NQIVECNALPTLILMLRSED-SAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLS 301
           + I+    +P  +  L   D S I +E+   + N+   +    K V+  GA+   I LL+
Sbjct: 78  DNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLA 137
Query: 302 SCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRL 360
           S  +    +A   LG  A   S  +  +++ GA+ PL+ +L  PD     +S  A G L
Sbjct: 138 SPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPD-----LSTLACGYL 191

>pdb|1Q1S|C Chain C, Mouse Importin Alpha- Phosphorylated Sv40 Cn Peptide Complex Length = 466

Iteration: 1
 Score = 71.6 bits (174), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 65/267 (24%), Positives = 119/267 (44%), Gaps = 14/267 (5%)
Query: 100 IVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIVDNGAL 159
           +V+GGA+PA +  L +P    +++ +    +    GSAF           + L++ +GA+
Sbjct: 95  VVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAF-----------RDLVIKHGAI 143
Query: 160 SHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFT 219
             L+ LL      + S      +R     ++NL    +       +E  +P LV LL   
Sbjct: 144 DPLLALLAV---PDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHN 200
Query: 220 DTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHS 279
           D +V   +  A+  L    +E    +V+   +P L+ +L + +  I   A+  IGN+V  
Sbjct: 201 DPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTG 260
Query: 280 SPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLI 339
           +    ++V+ AGAL     LL++  +  Q+EA   +    A   D    +V  G V  L+
Sbjct: 261 TDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLV 320
Query: 340 EMLQSPDVQLREMSAFALGRLAQVITV 366
            +L   D + ++ +A+A+       TV
Sbjct: 321 GVLSKADFKTQKEAAWAITNYTSGGTV 347

>pdb|1Q1S|C Chain C, Mouse Importin Alpha- Phosphorylated Sv40 Cn Peptide Complex Length = 466

Iteration: 1
 Score = 49.7 bits (117), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 32/119 (26%), Positives = 54/119 (45%), Gaps = 6/119 (5%)
Query: 243 NQIVECNALPTLILMLRSED-SAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLS 301
           + I+    +P  +  L   D S I +E+   + N+   +    K V+  GA+   I LL+
Sbjct: 50  DNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLA 109
Query: 302 SCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRL 360
           S  +    +A   LG  A   S  +  +++ GA+ PL+ +L  PD     +S  A G L
Sbjct: 110 SPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPD-----LSTLACGYL 163

>pdb|4BA3|A Chain A, Mimp_alphadibb_a89nls Length = 496

Iteration: 1
 Score = 71.2 bits (173), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 65/267 (24%), Positives = 119/267 (44%), Gaps = 14/267 (5%)
Query: 100 IVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIVDNGAL 159
           +V+GGA+PA +  L +P    +++ +    +    GSAF           + L++ +GA+
Sbjct: 125 VVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAF-----------RDLVIKHGAI 173
Query: 160 SHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFT 219
             L+ LL      + S      +R     ++NL    +       +E  +P LV LL   
Sbjct: 174 DPLLALLAV---PDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHN 230
Query: 220 DTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHS 279
           D +V   +  A+  L    +E    +V+   +P L+ +L + +  I   A+  IGN+V  
Sbjct: 231 DPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTG 290
Query: 280 SPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLI 339
           +    ++V+ AGAL     LL++  +  Q+EA   +    A   D    +V  G V  L+
Sbjct: 291 TDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLV 350
Query: 340 EMLQSPDVQLREMSAFALGRLAQVITV 366
            +L   D + ++ +A+A+       TV
Sbjct: 351 GVLSKADFKTQKEAAWAITNYTSGGTV 377

>pdb|4BA3|A Chain A, Mimp_alphadibb_a89nls Length = 496

Iteration: 1
 Score = 49.7 bits (117), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 32/119 (26%), Positives = 54/119 (45%), Gaps = 6/119 (5%)
Query: 243 NQIVECNALPTLILMLRSED-SAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLS 301
           + I+    +P  +  L   D S I +E+   + N+   +    K V+  GA+   I LL+
Sbjct: 80  DNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLA 139
Query: 302 SCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRL 360
           S  +    +A   LG  A   S  +  +++ GA+ PL+ +L  PD     +S  A G L
Sbjct: 140 SPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPD-----LSTLACGYL 193

>pdb|3UKW|B Chain B, Mouse Importin Alpha: Bimax1 Peptide Complex Length = 510

Iteration: 1
 Score = 71.2 bits (173), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 65/267 (24%), Positives = 119/267 (44%), Gaps = 14/267 (5%)
Query: 100 IVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIVDNGAL 159
           +V+GGA+PA +  L +P    +++ +    +    GSAF           + L++ +GA+
Sbjct: 139 VVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAF-----------RDLVIKHGAI 187
Query: 160 SHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFT 219
             L+ LL      + S      +R     ++NL    +       +E  +P LV LL   
Sbjct: 188 DPLLALLAV---PDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHN 244
Query: 220 DTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHS 279
           D +V   +  A+  L    +E    +V+   +P L+ +L + +  I   A+  IGN+V  
Sbjct: 245 DPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTG 304
Query: 280 SPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLI 339
           +    ++V+ AGAL     LL++  +  Q+EA   +    A   D    +V  G V  L+
Sbjct: 305 TDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLV 364
Query: 340 EMLQSPDVQLREMSAFALGRLAQVITV 366
            +L   D + ++ +A+A+       TV
Sbjct: 365 GVLSKADFKTQKEAAWAITNYTSGGTV 391

>pdb|3UKW|B Chain B, Mouse Importin Alpha: Bimax1 Peptide Complex Length = 510

Iteration: 1
 Score = 49.7 bits (117), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 32/119 (26%), Positives = 54/119 (45%), Gaps = 6/119 (5%)
Query: 243 NQIVECNALPTLILMLRSED-SAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLS 301
           + I+    +P  +  L   D S I +E+   + N+   +    K V+  GA+   I LL+
Sbjct: 94  DNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLA 153
Query: 302 SCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRL 360
           S  +    +A   LG  A   S  +  +++ GA+ PL+ +L  PD     +S  A G L
Sbjct: 154 SPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPD-----LSTLACGYL 207

>pdb|4HTV|A Chain A, Mouse Importin Alpha: Bfdv Cap Nls Peptide Complex Length = 509

Iteration: 1
 Score = 71.2 bits (173), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 65/267 (24%), Positives = 119/267 (44%), Gaps = 14/267 (5%)
Query: 100 IVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIVDNGAL 159
           +V+GGA+PA +  L +P    +++ +    +    GSAF           + L++ +GA+
Sbjct: 139 VVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAF-----------RDLVIKHGAI 187
Query: 160 SHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFT 219
             L+ LL      + S      +R     ++NL    +       +E  +P LV LL   
Sbjct: 188 DPLLALLAV---PDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHN 244
Query: 220 DTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHS 279
           D +V   +  A+  L    +E    +V+   +P L+ +L + +  I   A+  IGN+V  
Sbjct: 245 DPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTG 304
Query: 280 SPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLI 339
           +    ++V+ AGAL     LL++  +  Q+EA   +    A   D    +V  G V  L+
Sbjct: 305 TDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLV 364
Query: 340 EMLQSPDVQLREMSAFALGRLAQVITV 366
            +L   D + ++ +A+A+       TV
Sbjct: 365 GVLSKADFKTQKEAAWAITNYTSGGTV 391

>pdb|4HTV|A Chain A, Mouse Importin Alpha: Bfdv Cap Nls Peptide Complex Length = 509

Iteration: 1
 Score = 49.3 bits (116), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 32/119 (26%), Positives = 54/119 (45%), Gaps = 6/119 (5%)
Query: 243 NQIVECNALPTLILMLRSED-SAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLS 301
           + I+    +P  +  L   D S I +E+   + N+   +    K V+  GA+   I LL+
Sbjct: 94  DNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLA 153
Query: 302 SCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRL 360
           S  +    +A   LG  A   S  +  +++ GA+ PL+ +L  PD     +S  A G L
Sbjct: 154 SPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPD-----LSTLACGYL 207

>pdb|3RZ9|A Chain A, Mouse Importin Alpha-Ku80 Nls Peptide Complex Length = 510

Iteration: 1
 Score = 71.2 bits (173), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 65/267 (24%), Positives = 119/267 (44%), Gaps = 14/267 (5%)
Query: 100 IVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIVDNGAL 159
           +V+GGA+PA +  L +P    +++ +    +    GSAF           + L++ +GA+
Sbjct: 139 VVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAF-----------RDLVIKHGAI 187
Query: 160 SHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFT 219
             L+ LL      + S      +R     ++NL    +       +E  +P LV LL   
Sbjct: 188 DPLLALLAV---PDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHN 244
Query: 220 DTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHS 279
           D +V   +  A+  L    +E    +V+   +P L+ +L + +  I   A+  IGN+V  
Sbjct: 245 DPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTG 304
Query: 280 SPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLI 339
           +    ++V+ AGAL     LL++  +  Q+EA   +    A   D    +V  G V  L+
Sbjct: 305 TDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLV 364
Query: 340 EMLQSPDVQLREMSAFALGRLAQVITV 366
            +L   D + ++ +A+A+       TV
Sbjct: 365 GVLSKADFKTQKEAAWAITNYTSGGTV 391

>pdb|3RZ9|A Chain A, Mouse Importin Alpha-Ku80 Nls Peptide Complex Length = 510

Iteration: 1
 Score = 49.7 bits (117), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 32/119 (26%), Positives = 54/119 (45%), Gaps = 6/119 (5%)
Query: 243 NQIVECNALPTLILMLRSED-SAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLS 301
           + I+    +P  +  L   D S I +E+   + N+   +    K V+  GA+   I LL+
Sbjct: 94  DNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLA 153
Query: 302 SCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRL 360
           S  +    +A   LG  A   S  +  +++ GA+ PL+ +L  PD     +S  A G L
Sbjct: 154 SPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPD-----LSTLACGYL 207

>pdb|3TPO|A Chain A, Crystal Structure Of D192aE396A MUTANT OF MOUSE IMPORTIN ALPHA2 Length = 529

Iteration: 1
 Score = 71.2 bits (173), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 65/267 (24%), Positives = 119/267 (44%), Gaps = 14/267 (5%)
Query: 100 IVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIVDNGAL 159
           +V+GGA+PA +  L +P    +++ +    +    GSAF           + L++ +GA+
Sbjct: 158 VVDGGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAF-----------RDLVIKHGAI 206
Query: 160 SHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFT 219
             L+ LL      + S      +R     ++NL    +       +E  +P LV LL   
Sbjct: 207 DPLLALLAV---PDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHN 263
Query: 220 DTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHS 279
           D +V   +  A+  L    +E    +V+   +P L+ +L + +  I   A+  IGN+V  
Sbjct: 264 DPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTG 323
Query: 280 SPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLI 339
           +    ++V+ AGAL     LL++  +  Q+EA   +    A   D    +V  G V  L+
Sbjct: 324 TDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLV 383
Query: 340 EMLQSPDVQLREMSAFALGRLAQVITV 366
            +L   D + ++ +A+A+       TV
Sbjct: 384 GVLSKADFKTQKAAAWAITNYTSGGTV 410

>pdb|3TPO|A Chain A, Crystal Structure Of D192aE396A MUTANT OF MOUSE IMPORTIN ALPHA2 Length = 529

Iteration: 1
 Score = 50.1 bits (118), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 32/119 (26%), Positives = 54/119 (45%), Gaps = 6/119 (5%)
Query: 243 NQIVECNALPTLILMLRSED-SAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLS 301
           + I+    +P  +  L   D S I +E+   + N+   +    K V+  GA+   I LL+
Sbjct: 113 DNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLA 172
Query: 302 SCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRL 360
           S  +    +A   LG  A   S  +  +++ GA+ PL+ +L  PD     +S  A G L
Sbjct: 173 SPHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPD-----LSTLACGYL 226

>pdb|4DB8|A Chain A, Designed Armadillo-Repeat Protein Length = 252

Iteration: 1
 Score = 68.6 bits (166), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 58/197 (29%), Positives = 96/197 (48%), Gaps = 9/197 (4%)
Query: 148 EHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEG 207
           E  Q ++D GAL  LV LL        S     +++ A  A++N+A   +     V   G
Sbjct: 45  EQIQAVIDAGALPALVQLL--------SSPNEQILQEALWALSNIASGGNEQIQAVIDAG 96
Query: 208 GIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHY 267
            +P LV+LL   + ++ + A  AL  +A   +E    +++  ALP L+ +L S +  I  
Sbjct: 97  ALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQ 156
Query: 268 EAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKV 327
           EA+  + N+        + V+ AGAL  ++ LLSS   +  +EA   L   A+  ++ K 
Sbjct: 157 EALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQ 216
Query: 328 HIVQRGAVRPLIEMLQS 344
            + + GA+  L E LQS
Sbjct: 217 AVKEAGALEKL-EQLQS 232

>pdb|4DB8|A Chain A, Designed Armadillo-Repeat Protein Length = 252

Iteration: 1
 Score = 67.4 bits (163), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 44/155 (28%), Positives = 82/155 (52%)
Query: 207 GGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIH 266
           G +P LV+LL   + ++ + A  AL  +A   +E    +++  ALP L+ +L S +  I 
Sbjct: 54  GALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQIL 113
Query: 267 YEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCK 326
            EA+  + N+        + V+ AGAL  ++ LLSS   +  +EA   L   A+  ++  
Sbjct: 114 QEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQI 173
Query: 327 VHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLA 361
             ++  GA+  L+++L SP+ Q+ + + +AL  +A
Sbjct: 174 QAVIDAGALPALVQLLSSPNEQILQEALWALSNIA 208

>pdb|3FEX|C Chain C, Crystal Structure Of The Cbc-Importin Alpha Complex. Length = 467

Iteration: 1
 Score = 66.6 bits (161), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 63/267 (23%), Positives = 114/267 (42%), Gaps = 14/267 (5%)
Query: 100 IVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIVDNGAL 159
           +V+GGA+PA +  L +P    +++ +    +    GS F           + L++  GA+
Sbjct: 90  VVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSVF-----------RDLVIKYGAV 138
Query: 160 SHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFT 219
             L+ LL      + S      +R     ++NL    +       +E  +P LV LL   
Sbjct: 139 DPLLALLAV---PDMSSLACGYLRNLTWTLSNLCRNKNPAPPIDAVEQILPTLVRLLHHD 195
Query: 220 DTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHS 279
           D +V      A+  L    +E    +V+   +P L+ +L + +  I   A+  IGN+V  
Sbjct: 196 DPEVLADTCWAISYLTDGPNERIGMVVKTGVVPQLVKLLGASELPIVTPALRAIGNIVTG 255
Query: 280 SPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLI 339
           +    + V+ AGAL     LL++  +  Q+EA   +    A   D    +V  G V  L+
Sbjct: 256 TDEQTQVVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLV 315
Query: 340 EMLQSPDVQLREMSAFALGRLAQVITV 366
            +L   D + ++ + +A+       TV
Sbjct: 316 SVLSKADFKTQKEAVWAVTNYTSGGTV 342

>pdb|3FEX|C Chain C, Crystal Structure Of The Cbc-Importin Alpha Complex. Length = 467

Iteration: 1
 Score = 52.0 bits (123), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 34/119 (28%), Positives = 57/119 (47%), Gaps = 6/119 (5%)
Query: 243 NQIVECNALPTLILML-RSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLS 301
           + I+    +P  +  L R++ S I +E+   + N+   +    K V+  GA+   I LL+
Sbjct: 45  DNIIRAGLIPKFVSFLGRTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLA 104
Query: 302 SCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRL 360
           S  +    +A   LG  A   S  +  +++ GAV PL+ +L  PD     MS+ A G L
Sbjct: 105 SPHAHISEQAVWALGNIAGDGSVFRDLVIKYGAVDPLLALLAVPD-----MSSLACGYL 158

>pdb|4B8J|A Chain A, Rimp_alpha1a Length = 528

Iteration: 1
 Score = 64.7 bits (156), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 77/308 (25%), Positives = 141/308 (45%), Gaps = 52/308 (16%)
Query: 79  AAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAF 138
           AA   T++ +  ++N +VV   ++ GAVP  VK L     S +D        +V + + +
Sbjct: 138 AAWALTNIASGTSENTKVV---IDHGAVPIFVKLL----GSSSD--------DVREQAVW 182
Query: 139 ALGLLAV-KPEHQQLIVDNGALSHLVNLLKRH----MDSNCSRAVNSV-----------I 182
           ALG +A   P+ + L++ NGAL  L+  L  H    M  N +  +++             
Sbjct: 183 ALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQPSFEQT 242
Query: 183 RRAADAITNLAHEN------------------SSIKTRVRMEGGI-PPLVELLEFTDTKV 223
           R A  A+  L H N                  ++ K +  +E G+ P LVELL      V
Sbjct: 243 RPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSV 302
Query: 224 QRAAAGALRTLAFKNDENKNQIVECNALPTLI-LMLRSEDSAIHYEAVGVIGNLVHSSPN 282
              A   +  +   +D     I++  ALP L+ L+ ++   +I  EA   I N+   + +
Sbjct: 303 LIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNKD 362
Query: 283 IKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKV-HIVQRGAVRPLIEM 341
             + V+ AG + P++ LL +   + ++EAA  +    +  S  ++ ++V  G ++PL ++
Sbjct: 363 QIQAVINAGIIGPLVNLLQTAEFDIKKEAAWAISNATSGGSHDQIKYLVSEGCIKPLCDL 422
Query: 342 LQSPDVQL 349
           L  PD+++
Sbjct: 423 LICPDIRI 430

>pdb|4B8J|A Chain A, Rimp_alpha1a Length = 528

Iteration: 1
 Score = 52.8 bits (125), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 48/172 (27%), Positives = 76/172 (44%), Gaps = 3/172 (1%)
Query: 192 LAHENSSIKTRVRMEGGIPPLVELLEFTD-TKVQRAAAGALRTLAFKNDENKNQIVECNA 250
           L+ E S     V   G +P  V+ L   D  ++Q  AA AL  +A    EN   +++  A
Sbjct: 102 LSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENTKVVIDHGA 161
Query: 251 LPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQ-R 309
           +P  + +L S    +  +AV  +GN+   SP  +  VLA GAL P++  L+     S  R
Sbjct: 162 VPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLR 221
Query: 310 EAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLA 361
            A   L  F             R A+  L  ++ S D ++   + +AL  L+
Sbjct: 222 NATWTLSNFCRGKPQPSFEQT-RPALPALARLIHSNDEEVLTDACWALSYLS 272

>pdb|2YNS|A Chain A, Rimp_alpha_b54nls Length = 490

Iteration: 1
 Score = 64.7 bits (156), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 77/308 (25%), Positives = 141/308 (45%), Gaps = 52/308 (16%)
Query: 79  AAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAF 138
           AA   T++ +  ++N +VV   ++ GAVP  VK L     S +D        +V + + +
Sbjct: 100 AAWALTNIASGTSENTKVV---IDHGAVPIFVKLL----GSSSD--------DVREQAVW 144
Query: 139 ALGLLAV-KPEHQQLIVDNGALSHLVNLLKRH----MDSNCSRAVNSVIRR--------- 184
           ALG +A   P+ + L++ NGAL  L+  L  H    M  N +  +++  R          
Sbjct: 145 ALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQPSFEQT 204
Query: 185 --AADAITNLAHEN------------------SSIKTRVRMEGGIPP-LVELLEFTDTKV 223
             A  A+  L H N                  ++ K +  +E G+ P LVELL      V
Sbjct: 205 RPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSV 264
Query: 224 QRAAAGALRTLAFKNDENKNQIVECNALPTLI-LMLRSEDSAIHYEAVGVIGNLVHSSPN 282
              A   +  +   +D     I++  ALP L+ L+ ++   +I  EA   I N+   + +
Sbjct: 265 LIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNKD 324
Query: 283 IKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKV-HIVQRGAVRPLIEM 341
             + V+ AG + P++ LL +   + ++EAA  +    +  S  ++ ++V  G ++PL ++
Sbjct: 325 QIQAVINAGIIGPLVNLLQTAEFDIKKEAAWAISNATSGGSHDQIKYLVSEGCIKPLCDL 384
Query: 342 LQSPDVQL 349
           L  PD+++
Sbjct: 385 LICPDIRI 392

>pdb|2YNS|A Chain A, Rimp_alpha_b54nls Length = 490

Iteration: 1
 Score = 52.4 bits (124), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 48/172 (27%), Positives = 76/172 (44%), Gaps = 3/172 (1%)
Query: 192 LAHENSSIKTRVRMEGGIPPLVELLEFTD-TKVQRAAAGALRTLAFKNDENKNQIVECNA 250
           L+ E S     V   G +P  V+ L   D  ++Q  AA AL  +A    EN   +++  A
Sbjct: 64  LSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENTKVVIDHGA 123
Query: 251 LPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQ-R 309
           +P  + +L S    +  +AV  +GN+   SP  +  VLA GAL P++  L+     S  R
Sbjct: 124 VPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLR 183
Query: 310 EAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLA 361
            A   L  F             R A+  L  ++ S D ++   + +AL  L+
Sbjct: 184 NATWTLSNFCRGKPQPSFEQT-RPALPALARLIHSNDEEVLTDACWALSYLS 234

>pdb|4DB6|A Chain A, Designed Armadillo Repeat Protein (Yiiim3aii) Length = 210

Iteration: 1
 Score = 63.5 bits (153), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 56/209 (26%), Positives = 93/209 (44%), Gaps = 19/209 (9%)
Query: 103 GGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIVDNGALSHL 162
           G  +P +V+ L +P   E    L+        G+           E  Q ++D GAL  L
Sbjct: 11  GSELPQMVQQLNSPDQQELQSALRKLSQIASGGN-----------EQIQAVIDAGALPAL 59
Query: 163 VNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTK 222
           V LL        S     +++ A  A++N+A   +     V   G +P LV+LL   + +
Sbjct: 60  VQLL--------SSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQ 111
Query: 223 VQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPN 282
           + + A  AL  +A   +E    +++  ALP L+ +L S +  I  EA+  + N+      
Sbjct: 112 ILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNE 171
Query: 283 IKKEVLAAGALQPVIGLLSSCCSESQREA 311
            K+ V  AGAL+ +  L S    + Q+EA
Sbjct: 172 QKQAVKEAGALEKLEQLQSHENEKIQKEA 200

>pdb|4DB6|A Chain A, Designed Armadillo Repeat Protein (Yiiim3aii) Length = 210

Iteration: 1
 Score = 58.9 bits (141), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 41/153 (26%), Positives = 79/153 (51%)
Query: 209 IPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYE 268
           +P +V+ L   D +  ++A   L  +A   +E    +++  ALP L+ +L S +  I  E
Sbjct: 14  LPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQE 73
Query: 269 AVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVH 328
           A+  + N+        + V+ AGAL  ++ LLSS   +  +EA   L   A+  ++    
Sbjct: 74  ALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQA 133
Query: 329 IVQRGAVRPLIEMLQSPDVQLREMSAFALGRLA 361
           ++  GA+  L+++L SP+ Q+ + + +AL  +A
Sbjct: 134 VIDAGALPALVQLLSSPNEQILQEALWALSNIA 166

>pdb|4DB9|A Chain A, Designed Armadillo Repeat Protein (Yiiim3aiii) Length = 210

Iteration: 1
 Score = 62.8 bits (151), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 57/210 (27%), Positives = 94/210 (44%), Gaps = 21/210 (10%)
Query: 103 GGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIVDNGALSHL 162
           G  +P +V+ L +P   E    L+        G+           E  Q ++D GAL  L
Sbjct: 11  GSELPQMVQQLNSPDQQELQSALRKLSQIASGGN-----------EQIQAVIDAGALPAL 59
Query: 163 VNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTK 222
           V LL        S     +++ A  A++N+A   +     V   G +P LV+LL   + +
Sbjct: 60  VQLL--------SSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQ 111
Query: 223 VQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPN 282
           + + A  AL  +A   +E    +++  ALP L+ +L S +  I  EA+  + N+      
Sbjct: 112 ILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNE 171
Query: 283 IKKEVLAAGALQPVIGLLSSCCSES-QREA 311
            K+ V  AGA +P +  L S  +E  Q+EA
Sbjct: 172 QKQAVKEAGA-EPALEQLQSSPNEKIQKEA 200

>pdb|4DB9|A Chain A, Designed Armadillo Repeat Protein (Yiiim3aiii) Length = 210

Iteration: 1
 Score = 59.7 bits (143), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 45/155 (29%), Positives = 82/155 (52%), Gaps = 2/155 (1%)
Query: 207 GGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIH 266
           G +P LV+LL   + ++ + A  AL  +A   +E    +++  ALP L+ +L S +  I 
Sbjct: 54  GALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQIL 113
Query: 267 YEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCK 326
            EA+  + N+        + V+ AGAL  ++ LLSS   +  +EA   L   A+  ++ K
Sbjct: 114 QEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQK 173
Query: 327 VHIVQRGAVRPLIEMLQ-SPDVQLREMSAFALGRL 360
             + + GA  P +E LQ SP+ ++++ +  AL ++
Sbjct: 174 QAVKEAGA-EPALEQLQSSPNEKIQKEAQEALEKI 207

>pdb|4DBA|A Chain A, Designed Armadillo Repeat Protein (Yiim3aii) Length = 210

Iteration: 1
 Score = 58.9 bits (141), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 49/170 (28%), Positives = 82/170 (48%), Gaps = 8/170 (4%)
Query: 142 LLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKT 201
           +L+   E  Q ++D GAL  LV LL        S     +++ A  A++N+A   +    
Sbjct: 39  ILSDGNEQIQAVIDAGALPALVQLL--------SSPNEQILQEALWALSNIASGGNEQIQ 90
Query: 202 RVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSE 261
            V   G +P LV+LL   + ++ + A  AL  +A   +E    +++  ALP L+ +L S 
Sbjct: 91  AVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSP 150
Query: 262 DSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREA 311
           +  I  EA+  + N+       K+ V  AGAL+ +  L S    + Q+EA
Sbjct: 151 NEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEA 200

>pdb|4DBA|A Chain A, Designed Armadillo Repeat Protein (Yiim3aii) Length = 210

Iteration: 1
 Score = 57.8 bits (138), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 42/138 (30%), Positives = 71/138 (51%), Gaps = 1/138 (0%)
Query: 207 GGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIH 266
           G +P LV+LL   + ++ + A  AL  +A   +E    +++  ALP L+ +L S +  I 
Sbjct: 54  GALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQIL 113
Query: 267 YEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCK 326
            EA+  + N+        + V+ AGAL  ++ LLSS   +  +EA   L   A+  ++ K
Sbjct: 114 QEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQK 173
Query: 327 VHIVQRGAVRPLIEMLQS 344
             + + GA+  L E LQS
Sbjct: 174 QAVKEAGALEKL-EQLQS 190

>pdb|3L6X|A Chain A, Crystal Structure Of P120 Catenin In Complex With E-Cadherin Length = 584

Iteration: 1
 Score = 57.8 bits (138), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 39/113 (34%), Positives = 62/113 (54%), Gaps = 3/113 (2%)
Query: 178 VNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFK 237
           +++V   AA  + +L + N  +KT VR   GIP LV LL+    +V   A GAL+ ++F 
Sbjct: 61  LDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFG 120
Query: 238 ND-ENKNQIVECNALPTLILMLR-SEDSAIHYEAVGVIGNLVHSSPNIKKEVL 288
            D +NK  I  C+ +P L+ +LR + D  +     G + NL  S  +IK E++
Sbjct: 121 RDQDNKIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNL-SSHDSIKMEIV 172

>pdb|2JDQ|A Chain A, C-Terminal Domain Of Influenza A Virus Polymerase Pb2 Subunit In Complex With Human Importin Alpha5 Length = 450

Iteration: 1
 Score = 54.3 bits (129), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 55/218 (25%), Positives = 99/218 (45%), Gaps = 14/218 (6%)
Query: 147 PEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRME 206
           P   ++I   G ++  V  LKR    NC+    S     A  +TN+A  NS ++TR+ ++
Sbjct: 54  PPIDEVISTPGVVARFVEFLKRK--ENCTLQFES-----AWVLTNIASGNS-LQTRIVIQ 105
Query: 207 GG-IPPLVELL--EFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDS 263
            G +P  +ELL  EF D  VQ  A  AL  +A  +   ++ +++CN LP L+ +   ++ 
Sbjct: 106 AGAVPIFIELLSSEFED--VQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNR 163
Query: 264 -AIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATD 322
             +   AV  + NL        +    +  L  +  LL    ++   +A   L   +   
Sbjct: 164 LTMTRNAVWALSNLCRGKSPPPEFAKVSPCLNVLSWLLFVSDTDVLADACWALSYLSDGP 223
Query: 323 SDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRL 360
           +D    ++  G  R L+E+L   D ++   +  A+G +
Sbjct: 224 NDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNI 261

>pdb|3TJ3|A Chain A, Structure Of Importin A5 Bound To The N-Terminus Of Nup50 Length = 447

Iteration: 1
 Score = 54.3 bits (129), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 55/218 (25%), Positives = 99/218 (45%), Gaps = 14/218 (6%)
Query: 147 PEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRME 206
           P   ++I   G ++  V  LKR    NC+    S     A  +TN+A  NS ++TR+ ++
Sbjct: 51  PPIDEVISTPGVVARFVEFLKRK--ENCTLQFES-----AWVLTNIASGNS-LQTRIVIQ 102
Query: 207 GG-IPPLVELL--EFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDS 263
            G +P  +ELL  EF D  VQ  A  AL  +A  +   ++ +++CN LP L+ +   ++ 
Sbjct: 103 AGAVPIFIELLSSEFED--VQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNR 160
Query: 264 -AIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATD 322
             +   AV  + NL        +    +  L  +  LL    ++   +A   L   +   
Sbjct: 161 LTMTRNAVWALSNLCRGKSPPPEFAKVSPCLNVLSWLLFVSDTDVLADACWALSYLSDGP 220
Query: 323 SDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRL 360
           +D    ++  G  R L+E+L   D ++   +  A+G +
Sbjct: 221 NDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNI 258

>pdb|1XM9|A Chain A, Structure Of The Armadillo Repeat Domain Of Plakophilin 1 Length = 457

Iteration: 1
 Score = 53.9 bits (128), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 43/114 (37%), Positives = 62/114 (54%), Gaps = 4/114 (3%)
Query: 185 AADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQ 244
            A  I +   ++ S K +V   GGI  LV+LL   +  VQ+AAAGALR L F++  NK +
Sbjct: 22  GAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLE 81
Query: 245 IVECNALPTLILMLRSEDSA-IHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVI 297
               N +   + +LR   +A I  +  G++ NL  SS +  KE L A AL PV+
Sbjct: 82  TRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNL--SSTDELKEELIADAL-PVL 132

>pdb|1UN0|A Chain A, Crystal Structure Of Yeast Karyopherin (Importin) Alpha In Complex With A Nup2p N-Terminal Fragment Length = 443

Iteration: 1
 Score = 42.4 bits (98), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 45/203 (22%), Positives = 92/203 (45%), Gaps = 14/203 (6%)
Query: 185 AADAITNLAHENSSIKTRVRMEG-GIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKN 243
           AA A+TN+A   +S +T+V ++   +P  ++LL     +V+  A  AL  +A  + + ++
Sbjct: 64  AAWALTNIAS-GTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRD 122
Query: 244 QIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSC 303
            +++CNA+  ++ +  S   ++   A   + NL           + + AL  +  L+ S 
Sbjct: 123 YVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSM 182
Query: 304 CSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEML-------QSPDVQLREMSAFA 356
            +E+  +A   +   +    +    ++     + L+E+L       Q+P   LR +    
Sbjct: 183 DTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTP--ALRAVGNIV 240
Query: 357 LGRLAQ---VITVSVLPAILIFI 376
            G   Q   VI   VLPA+ + +
Sbjct: 241 TGNDLQTQVVINAGVLPALRLLL 263

>pdb|1EE5|A Chain A, Yeast Karyopherin (Importin) Alpha In A Complex With A Nucleoplasmin Nls Peptide Length = 424

Iteration: 1
 Score = 42.4 bits (98), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 45/203 (22%), Positives = 92/203 (45%), Gaps = 14/203 (6%)
Query: 185 AADAITNLAHENSSIKTRVRMEG-GIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKN 243
           AA A+TN+A   +S +T+V ++   +P  ++LL     +V+  A  AL  +A  + + ++
Sbjct: 65  AAWALTNIAS-GTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRD 123
Query: 244 QIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSC 303
            +++CNA+  ++ +  S   ++   A   + NL           + + AL  +  L+ S 
Sbjct: 124 YVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSM 183
Query: 304 CSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEML-------QSPDVQLREMSAFA 356
            +E+  +A   +   +    +    ++     + L+E+L       Q+P   LR +    
Sbjct: 184 DTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTP--ALRAVGNIV 241
Query: 357 LGRLAQ---VITVSVLPAILIFI 376
            G   Q   VI   VLPA+ + +
Sbjct: 242 TGNDLQTQVVINAGVLPALRLLL 264

>pdb|1EE4|A Chain A, Crystal Structure Of Yeast Karyopherin (Importin) Alpha In A Complex With A C-Myc Nls Peptide Length = 423

Iteration: 1
 Score = 42.4 bits (98), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 45/203 (22%), Positives = 92/203 (45%), Gaps = 14/203 (6%)
Query: 185 AADAITNLAHENSSIKTRVRMEG-GIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKN 243
           AA A+TN+A   +S +T+V ++   +P  ++LL     +V+  A  AL  +A  + + ++
Sbjct: 65  AAWALTNIAS-GTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRD 123
Query: 244 QIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSC 303
            +++CNA+  ++ +  S   ++   A   + NL           + + AL  +  L+ S 
Sbjct: 124 YVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSM 183
Query: 304 CSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEML-------QSPDVQLREMSAFA 356
            +E+  +A   +   +    +    ++     + L+E+L       Q+P   LR +    
Sbjct: 184 DTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTP--ALRAVGNIV 241
Query: 357 LGRLAQ---VITVSVLPAILIFI 376
            G   Q   VI   VLPA+ + +
Sbjct: 242 TGNDLQTQVVINAGVLPALRLLL 264

>pdb|2C1T|A Chain A, Structure Of The Kap60p:nup2 Complex Length = 454

Iteration: 1
 Score = 42.4 bits (98), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 45/203 (22%), Positives = 92/203 (45%), Gaps = 14/203 (6%)
Query: 185 AADAITNLAHENSSIKTRVRMEG-GIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKN 243
           AA A+TN+A   +S +T+V ++   +P  ++LL     +V+  A  AL  +A  + + ++
Sbjct: 64  AAWALTNIAS-GTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRD 122
Query: 244 QIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSC 303
            +++CNA+  ++ +  S   ++   A   + NL           + + AL  +  L+ S 
Sbjct: 123 YVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSM 182
Query: 304 CSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEML-------QSPDVQLREMSAFA 356
            +E+  +A   +   +    +    ++     + L+E+L       Q+P   LR +    
Sbjct: 183 DTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTP--ALRAVGNIV 240
Query: 357 LGRLAQ---VITVSVLPAILIFI 376
            G   Q   VI   VLPA+ + +
Sbjct: 241 TGNDLQTQVVINAGVLPALRLLL 263

>pdb|1WA5|B Chain B, Crystal Structure Of The Exportin Cse1p Complexed With Its Cargo (Kap60p) And Rangtp Length = 530

Iteration: 1
 Score = 45.1 bits (105), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 50/259 (19%), Positives = 112/259 (43%), Gaps = 21/259 (8%)
Query: 100 IVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA-VKPEHQQLIVDNGA 158
           +V+  AVP  ++ L                 EV++ + +ALG +A    +++  ++   A
Sbjct: 169 VVDADAVPLFIQLLYTGSV------------EVKEQAIWALGNVAGDSTDYRDYVLQCNA 216
Query: 159 LSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEF 218
           +  ++ L   +  S        +IR A   ++NL            +   +P L +L+  
Sbjct: 217 MEPILGLFNSNKPS--------LIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYS 268
Query: 219 TDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVH 278
            DT+    A  A+  L+    E    +++      L+ +L  E + +   A+  +GN+V 
Sbjct: 269 MDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVT 328
Query: 279 SSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPL 338
            +    + V+ AG L  +  LLSS     ++EA   +    A +++    ++    + PL
Sbjct: 329 GNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPL 388
Query: 339 IEMLQSPDVQLREMSAFAL 357
           +++L+  + + ++ + +A+
Sbjct: 389 VKLLEVAEYKTKKEACWAI 407

>pdb|1WA5|B Chain B, Crystal Structure Of The Exportin Cse1p Complexed With Its Cargo (Kap60p) And Rangtp Length = 530

Iteration: 1
 Score = 42.0 bits (97), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 45/203 (22%), Positives = 92/203 (45%), Gaps = 14/203 (6%)
Query: 185 AADAITNLAHENSSIKTRVRMEG-GIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKN 243
           AA A+TN+A   +S +T+V ++   +P  ++LL     +V+  A  AL  +A  + + ++
Sbjct: 151 AAWALTNIAS-GTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRD 209
Query: 244 QIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSC 303
            +++CNA+  ++ +  S   ++   A   + NL           + + AL  +  L+ S 
Sbjct: 210 YVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSM 269
Query: 304 CSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEML-------QSPDVQLREMSAFA 356
            +E+  +A   +   +    +    ++     + L+E+L       Q+P   LR +    
Sbjct: 270 DTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTP--ALRAVGNIV 327
Query: 357 LGRLAQ---VITVSVLPAILIFI 376
            G   Q   VI   VLPA+ + +
Sbjct: 328 TGNDLQTQVVINAGVLPALRLLL 350

>pdb|1BK6|A Chain A, Karyopherin Alpha (Yeast) + Sv40 T Antigen Nls Length = 422

Iteration: 1
 Score = 46.2 bits (108), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 45/228 (19%), Positives = 103/228 (45%), Gaps = 9/228 (3%)
Query: 131 EVEKGSAFALGLLAV-KPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAI 189
           EV++ + +ALG +A    +++  ++   A+  ++ L   +  S        +IR A   +
Sbjct: 100 EVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPS--------LIRTATWTL 151
Query: 190 TNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECN 249
           +NL            +   +P L +L+   DT+    A  A+  L+    E    +++  
Sbjct: 152 SNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVR 211
Query: 250 ALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQR 309
               L+ +L  E + +   A+  +GN+V  +    + V+ AG L  +  LLSS     ++
Sbjct: 212 IPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKK 271
Query: 310 EAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFAL 357
           EA   +    A +++    ++    + PL+++L+  + + ++ + +A+
Sbjct: 272 EACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAI 319

>pdb|1BK6|A Chain A, Karyopherin Alpha (Yeast) + Sv40 T Antigen Nls Length = 422

Iteration: 1
 Score = 42.4 bits (98), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 45/203 (22%), Positives = 92/203 (45%), Gaps = 14/203 (6%)
Query: 185 AADAITNLAHENSSIKTRVRMEG-GIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKN 243
           AA A+TN+A   +S +T+V ++   +P  ++LL     +V+  A  AL  +A  + + ++
Sbjct: 63  AAWALTNIAS-GTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRD 121
Query: 244 QIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSC 303
            +++CNA+  ++ +  S   ++   A   + NL           + + AL  +  L+ S 
Sbjct: 122 YVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSM 181
Query: 304 CSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEML-------QSPDVQLREMSAFA 356
            +E+  +A   +   +    +    ++     + L+E+L       Q+P   LR +    
Sbjct: 182 DTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTP--ALRAVGNIV 239
Query: 357 LGRLAQ---VITVSVLPAILIFI 376
            G   Q   VI   VLPA+ + +
Sbjct: 240 TGNDLQTQVVINAGVLPALRLLL 262

>pdb|1BK5|A Chain A, Karyopherin Alpha From Saccharomyces Cerevisiae Length = 422

Iteration: 1
 Score = 45.8 bits (107), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 45/228 (19%), Positives = 103/228 (45%), Gaps = 9/228 (3%)
Query: 131 EVEKGSAFALGLLAV-KPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAI 189
           EV++ + +ALG +A    +++  ++   A+  ++ L   +  S        +IR A   +
Sbjct: 100 EVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPS--------LIRTATWTL 151
Query: 190 TNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECN 249
           +NL            +   +P L +L+   DT+    A  A+  L+    E    +++  
Sbjct: 152 SNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVR 211
Query: 250 ALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQR 309
               L+ +L  E + +   A+  +GN+V  +    + V+ AG L  +  LLSS     ++
Sbjct: 212 IPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKK 271
Query: 310 EAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFAL 357
           EA   +    A +++    ++    + PL+++L+  + + ++ + +A+
Sbjct: 272 EACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAI 319

>pdb|1BK5|A Chain A, Karyopherin Alpha From Saccharomyces Cerevisiae Length = 422

Iteration: 1
 Score = 42.4 bits (98), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 45/203 (22%), Positives = 92/203 (45%), Gaps = 14/203 (6%)
Query: 185 AADAITNLAHENSSIKTRVRMEG-GIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKN 243
           AA A+TN+A   +S +T+V ++   +P  ++LL     +V+  A  AL  +A  + + ++
Sbjct: 63  AAWALTNIAS-GTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRD 121
Query: 244 QIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSC 303
            +++CNA+  ++ +  S   ++   A   + NL           + + AL  +  L+ S 
Sbjct: 122 YVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSM 181
Query: 304 CSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEML-------QSPDVQLREMSAFA 356
            +E+  +A   +   +    +    ++     + L+E+L       Q+P   LR +    
Sbjct: 182 DTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTP--ALRAVGNIV 239
Query: 357 LGRLAQ---VITVSVLPAILIFI 376
            G   Q   VI   VLPA+ + +
Sbjct: 240 TGNDLQTQVVINAGVLPALRLLL 262

>pdb|3TT9|A Chain A, Crystal Structure Of The Stable Degradation Fragment Of Human Plakophilin 2 Isoform A (Pkp2a) C752r Variant Length = 233

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 39/115 (33%), Positives = 63/115 (54%), Gaps = 3/115 (2%)
Query: 180 SVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKND 239
           S I  AA  I +   + S  + RV    GI  L++LL+  +  VQRA  GALR L F+++
Sbjct: 25  SRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDN 84
Query: 240 ENKNQIVECNALPTLILMLR-SEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGAL 293
           +NK ++ E N +P L+ +L+ + D     +  G++ NL  SS +  K ++   AL
Sbjct: 85  DNKLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNL--SSNDKLKNLMITEAL 137

>pdb|2Z6G|A Chain A, Crystal Structure Of A Full-Length Zebrafish Beta-Catenin Length = 780

Iteration: 1
 Score = 42.7 bits (99), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 49/188 (26%), Positives = 80/188 (42%), Gaps = 20/188 (10%)
Query: 74  EADRAAAKRATHVLAELAKNEEVVNWIVEGG-AVPALVKHLQAPPTSEADRNLKPFEHEV 132
           + D+    +A  ++ +L+K E   + I+     V A+V+ +Q     E  R      H +
Sbjct: 161 DEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTSGTLHNL 220
Query: 133 EKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNL 192
              S    GLLA        I  +G +  LVN+L           V+SV+  A   + NL
Sbjct: 221 ---SHHREGLLA--------IFKSGGIPALVNML--------GSPVDSVLFHAITTLHNL 261
Query: 193 AHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALP 252
                  K  VR+ GG+  +V LL  T+ K        L+ LA+ N E+K  I+      
Sbjct: 262 LLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQ 321
Query: 253 TLILMLRS 260
            L+ ++R+
Sbjct: 322 ALVNIMRT 329

>pdb|3LTM|A Chain A, Structure Of A New Family Of Artificial Alpha Helicoidal Repeat Proteins (Alpha-Rep) Based On Thermostable Heat-Like Repeats Length = 211

Iteration: 1
 Score = 42.0 bits (97), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 46/180 (25%), Positives = 74/180 (41%), Gaps = 40/180 (22%)
Query: 189 ITNLAHENSSIK-------TRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDEN 241
           I NL  ++  ++        ++  E  + PL++ L+  D  V+RAAA AL          
Sbjct: 25  IKNLQDDSYYVRRAAAYALGKIGDERAVEPLIKALKDEDAWVRRAAADAL---------- 74
Query: 242 KNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLS 301
             QI +  A+  LI  L+ ED  +   A   +G +               A++P+I  L 
Sbjct: 75  -GQIGDERAVEPLIKALKDEDGWVRQSAAVALGQIGDER-----------AVEPLIKALK 122
Query: 302 SCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLA 361
                 +  AA  LG+           I    AV PLI+ L+  D  +R+ +A ALG + 
Sbjct: 123 DEDWFVRIAAAFALGE-----------IGDERAVEPLIKALKDEDGWVRQSAADALGEIG 171

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	399
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	6e-58
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	5e-40
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	2e-33
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	2e-28
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	2e-26
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	1e-53
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	6e-50
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	4e-41
3oqs_A	510	Importin subunit alpha-2; importin alpha, karyophe	8e-53
3oqs_A	510	Importin subunit alpha-2; importin alpha, karyophe	3e-37
3oqs_A	510	Importin subunit alpha-2; importin alpha, karyophe	1e-36
3oqs_A	510	Importin subunit alpha-2; importin alpha, karyophe	2e-29
3oqs_A	510	Importin subunit alpha-2; importin alpha, karyophe	3e-23
3oqs_A	510	Importin subunit alpha-2; importin alpha, karyophe	5e-09
3oqs_A	510	Importin subunit alpha-2; importin alpha, karyophe	2e-04
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	4e-52
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	9e-40
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	3e-31
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	1e-25
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	5e-06
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	1e-50
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	4e-35
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	8e-26
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	8e-13
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	8e-06
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	1e-47
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	8e-44
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	1e-42
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	4e-41
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	5e-33
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	1e-20
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	1e-06
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	4e-47
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	8e-44
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	3e-41
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	2e-30
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	9e-46
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	5e-43
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	2e-42
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	1e-40
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	2e-32
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	2e-26
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	3e-21
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	5e-20
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	2e-45
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	2e-38
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	5e-32
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	2e-25
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	1e-17
3nmz_A	458	APC variant protein; protein-protein complex, arma	3e-42
3nmz_A	458	APC variant protein; protein-protein complex, arma	5e-35
3nmz_A	458	APC variant protein; protein-protein complex, arma	2e-30
3nmz_A	458	APC variant protein; protein-protein complex, arma	6e-26
3tt9_A	233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	8e-34
3tt9_A	233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	2e-22
3tt9_A	233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	8e-18
3tt9_A	233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	2e-16
3tt9_A	233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	2e-10
3tt9_A	233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	5e-06
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	5e-33
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	2e-23
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	1e-20
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	1e-31
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	2e-29
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	7e-26
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	2e-29
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	2e-22
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	2e-22
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	4e-18
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	9e-17
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	2e-15
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	5e-09
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	1e-26
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	5e-23
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	1e-19
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	2e-18
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	2e-17
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	3e-13
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	6e-11
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	2e-09
1oyz_A	280	Hypothetical protein YIBA; structural genomics, PS	4e-11
1oyz_A	280	Hypothetical protein YIBA; structural genomics, PS	3e-09
1oyz_A	280	Hypothetical protein YIBA; structural genomics, PS	4e-05
3ltm_A	211	Alpha-REP4; protein engineering, heat-like repeat,	8e-11
3ltm_A	211	Alpha-REP4; protein engineering, heat-like repeat,	2e-06
3ltj_A	201	Alpharep-4; protein engineering, heat-like repeat,	3e-10
3ltj_A	201	Alpharep-4; protein engineering, heat-like repeat,	5e-10
3ltj_A	201	Alpharep-4; protein engineering, heat-like repeat,	2e-07
1te4_A	131	Conserved protein MTH187; methanobacterium thermoa	3e-09
1te4_A	131	Conserved protein MTH187; methanobacterium thermoa	7e-08
3opb_A	778	SWI5-dependent HO expression protein 4; heat and a	1e-08
3opb_A	778	SWI5-dependent HO expression protein 4; heat and a	7e-06
2db0_A	253	253AA long hypothetical protein; heat repeats, hel	5e-08
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-05
1b3u_A	588	Protein (protein phosphatase PP2A); scaffold prote	8e-07
1b3u_A	588	Protein (protein phosphatase PP2A); scaffold prote	8e-04
3grl_A	651	General vesicular transport factor P115; vesicle t	2e-05

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450

 Score =  194 bits (495), Expect = 6e-58
 Identities = 60/305 (19%), Positives = 122/305 (40%), Gaps = 21/305 (6%)

Query: 76  DRAAAKRATHVLAELAK-NEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEK 134
           +      +  VL  +A  N      +++ GAVP  ++ L +               +V++
Sbjct: 78  NCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSE------------FEDVQE 125

Query: 135 GSAFALGLLAVK-PEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLA 193
            + +ALG +A      +  ++D   L  L+ L  +           ++ R A  A++NL 
Sbjct: 126 QAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRL-------TMTRNAVWALSNLC 178

Query: 194 HENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPT 253
              S      ++   +  L  LL  +DT V   A  AL  L+   ++    +++      
Sbjct: 179 RGKSPPPEFAKVSPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRR 238

Query: 254 LILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAAL 313
           L+ +L   D  +   A+  +GN+V       + +L   ALQ ++ LLSS     ++EA  
Sbjct: 239 LVELLMHNDYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACW 298

Query: 314 LLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQVITVSVLPAIL 373
            +    A +      ++       LI +LQ+ + + R+ +A+A+       +   +  ++
Sbjct: 299 TISNITAGNRAQIQTVIDANIFPALISILQTAEFRTRKEAAWAITNATSGGSAEQIKYLV 358

Query: 374 IFIII 378
               I
Sbjct: 359 ELGCI 363

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450

 Score =  146 bits (371), Expect = 5e-40
 Identities = 60/286 (20%), Positives = 121/286 (42%), Gaps = 22/286 (7%)

Query: 81  KRATHVLAELAK-NEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFA 139
           ++A   L  +A  +    +++++   +P L++           RN             +A
Sbjct: 125 EQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNA-----------VWA 173

Query: 140 LGLLAV-KPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSS 198
           L  L   K    +    +  L+ L  LL    D++       V+  A  A++ L+   + 
Sbjct: 174 LSNLCRGKSPPPEFAKVSPCLNVLSWLL-FVSDTD-------VLADACWALSYLSDGPND 225

Query: 199 IKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILML 258
               V   G    LVELL   D KV   A  A+  +   +D     I+ C+AL +L+ +L
Sbjct: 226 KIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLL 285

Query: 259 RSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQF 318
            S   +I  EA   I N+   +    + V+ A     +I +L +    +++EAA  +   
Sbjct: 286 SSPKESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQTAEFRTRKEAAWAITNA 345

Query: 319 AATDSDCKV-HIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQV 363
            +  S  ++ ++V+ G ++PL ++L   D ++ +++   L  + ++
Sbjct: 346 TSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVALNGLENILRL 391

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450

 Score =  128 bits (324), Expect = 2e-33
 Identities = 44/227 (19%), Positives = 79/227 (34%), Gaps = 12/227 (5%)

Query: 139 ALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLA--HEN 196
           A+G    +  + ++       S ++ ++     S            A      L     N
Sbjct: 2   AMGFHEAQINNMEMAPGGVITSDMIEMIF----SKSP----EQQLSATQKFRKLLSKEPN 53

Query: 197 SSIKTRVRMEGGIPPLVELLEFTD-TKVQRAAAGALRTLAFKNDENKNQIVECNALPTLI 255
             I   +   G +   VE L+  +   +Q  +A  L  +A  N      +++  A+P  I
Sbjct: 54  PPIDEVISTPGVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFI 113

Query: 256 LMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSES-QREAALL 314
            +L SE   +  +AV  +GN+   S   +  VL    L P++ L S     +  R A   
Sbjct: 114 ELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWA 173

Query: 315 LGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLA 361
           L       S           +  L  +L   D  +   + +AL  L+
Sbjct: 174 LSNLCRGKSPPPEFAKVSPCLNVLSWLLFVSDTDVLADACWALSYLS 220

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450

 Score =  114 bits (288), Expect = 2e-28
 Identities = 35/178 (19%), Positives = 73/178 (41%), Gaps = 6/178 (3%)

Query: 191 NLAHENSSIKTRVRMEGG--IPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQ--IV 246
            +    + I       GG     ++E++     + Q +A    R L  K         I 
Sbjct: 2   AMGFHEAQINNMEMAPGGVITSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVIS 61

Query: 247 ECNALPTLI-LMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCS 305
               +   +  + R E+  + +E+  V+ N+   +    + V+ AGA+   I LLSS   
Sbjct: 62  TPGVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFE 121

Query: 306 ESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPD-VQLREMSAFALGRLAQ 362
           + Q +A   LG  A   + C+ +++    + PL+++    + + +   + +AL  L +
Sbjct: 122 DVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCR 179

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450

 Score =  109 bits (273), Expect = 2e-26
 Identities = 50/323 (15%), Positives = 104/323 (32%), Gaps = 41/323 (12%)

Query: 48  SSDARQALLSE--VSAQVNVLNTTFSWLEADRAAAKRATHVLAELAKN-EEVVNWIVEGG 104
           S+  R  +L    +   + + +      +      + A   L+ L +       +     
Sbjct: 138 STMCRDYVLDCNILPPLLQLFSK-----QNRLTMTRNAVWALSNLCRGKSPPPEFAKVSP 192

Query: 105 AVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALG-LLAVKPEHQQLIVDNGALSHLV 163
            +  L   L    T            +V   + +AL  L     +  Q ++D G    LV
Sbjct: 193 CLNVLSWLLFVSDT------------DVLADACWALSYLSDGPNDKIQAVIDAGVCRRLV 240

Query: 164 NLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKV 223
            LL  H D         V+  A  A+ N+   +      +     +  L+ LL      +
Sbjct: 241 ELL-MHNDY-------KVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSPKESI 292

Query: 224 QRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNL-VHSSPN 282
           ++ A   +  +   N      +++ N  P LI +L++ +     EA   I N     S  
Sbjct: 293 KKEACWTISNITAGNRAQIQTVIDANIFPALISILQTAEFRTRKEAAWAITNATSGGSAE 352

Query: 283 IKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVH-----------IVQ 331
             K ++  G ++P+  LL+   S+  + A   L                        I +
Sbjct: 353 QIKYLVELGCIKPLCDLLTVMDSKIVQVALNGLENILRLGEQEAKRNGTGINPYCALIEE 412

Query: 332 RGAVRPLIEMLQSPDVQLREMSA 354
              +  +  +    + ++ + + 
Sbjct: 413 AYGLDKIEFLQSHENQEIYQKAF 435

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252

 Score =  177 bits (451), Expect = 1e-53
 Identities = 49/215 (22%), Positives = 92/215 (42%), Gaps = 8/215 (3%)

Query: 149 HQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGG 208
                     L  +   L    D             A    + +  + +     V   G 
Sbjct: 4   SHHHHHHGSELPQMTQQL-NSDDMQ-------EQLSATRKFSQILSDGNEQIQAVIDAGA 55

Query: 209 IPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYE 268
           +P LV+LL   + ++ + A  AL  +A   +E    +++  ALP L+ +L S +  I  E
Sbjct: 56  LPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQE 115

Query: 269 AVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVH 328
           A+  + N+        + V+ AGAL  ++ LLSS   +  +EA   L   A+  ++    
Sbjct: 116 ALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQA 175

Query: 329 IVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQV 363
           ++  GA+  L+++L SP+ Q+ + + +AL  +A  
Sbjct: 176 VIDAGALPALVQLLSSPNEQILQEALWALSNIASG 210

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252

 Score =  168 bits (427), Expect = 6e-50
 Identities = 60/263 (22%), Positives = 116/263 (44%), Gaps = 21/263 (7%)

Query: 100 IVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA-VKPEHQQLIVDNGA 158
              G  +P + + L +             + + +  +      +     E  Q ++D GA
Sbjct: 8   HHHGSELPQMTQQLNSD------------DMQEQLSATRKFSQILSDGNEQIQAVIDAGA 55

Query: 159 LSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEF 218
           L  LV LL        S     +++ A  A++N+A   +     V   G +P LV+LL  
Sbjct: 56  LPALVQLL--------SSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSS 107

Query: 219 TDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVH 278
            + ++ + A  AL  +A   +E    +++  ALP L+ +L S +  I  EA+  + N+  
Sbjct: 108 PNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIAS 167

Query: 279 SSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPL 338
                 + V+ AGAL  ++ LLSS   +  +EA   L   A+  ++ K  + + GA+  L
Sbjct: 168 GGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKL 227

Query: 339 IEMLQSPDVQLREMSAFALGRLA 361
            ++    + ++++ +  AL +L 
Sbjct: 228 EQLQSHENEKIQKEAQEALEKLQ 250

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252

 Score =  144 bits (366), Expect = 4e-41
 Identities = 63/247 (25%), Positives = 113/247 (45%), Gaps = 22/247 (8%)

Query: 76  DRAAAKRATHVLAELAK-NEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEK 134
           D      AT   +++     E +  +++ GA+PALV+ L +P              ++ +
Sbjct: 25  DMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNE------------QILQ 72

Query: 135 GSAFALGLLAVK-PEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLA 193
            + +AL  +A    E  Q ++D GAL  LV LL    +         +++ A  A++N+A
Sbjct: 73  EALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQ--------ILQEALWALSNIA 124

Query: 194 HENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPT 253
              +     V   G +P LV+LL   + ++ + A  AL  +A   +E    +++  ALP 
Sbjct: 125 SGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPA 184

Query: 254 LILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAAL 313
           L+ +L S +  I  EA+  + N+       K+ V  AGAL+ +  L S    + Q+EA  
Sbjct: 185 LVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQE 244

Query: 314 LLGQFAA 320
            L +  +
Sbjct: 245 ALEKLQS 251

>3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510

 Score =  182 bits (463), Expect = 8e-53
 Identities = 66/282 (23%), Positives = 122/282 (43%), Gaps = 17/282 (6%)

Query: 83  ATHVLAELAK-NEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALG 141
           +   L  +A    E    +V+GGA+PA +  L +P               + + + +ALG
Sbjct: 121 SAWALTNIASGTSEQTKAVVDGGAIPAFISLLASP------------HAHISEQAVWALG 168

Query: 142 LLAVK-PEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIK 200
            +A      + L++ +GA+  L+ LL      + S      +R     ++NL    +   
Sbjct: 169 NIAGDGSAFRDLVIKHGAIDPLLALLAVP---DLSTLACGYLRNLTWTLSNLCRNKNPAP 225

Query: 201 TRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRS 260
               +E  +P LV LL   D +V   +  A+  L    +E    +V+   +P L+ +L +
Sbjct: 226 PLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGA 285

Query: 261 EDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAA 320
            +  I   A+  IGN+V  +    ++V+ AGAL     LL++  +  Q+EA   +    A
Sbjct: 286 TELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITA 345

Query: 321 TDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQ 362
              D    +V  G V  L+ +L   D + ++ +A+A+     
Sbjct: 346 GRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTS 387

>3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510

 Score =  140 bits (354), Expect = 3e-37
 Identities = 61/286 (21%), Positives = 120/286 (41%), Gaps = 18/286 (6%)

Query: 81  KRATHVLAELAK-NEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFA 139
           ++A   L  +A       + +++ GA+  L+  L  P       +L        +   + 
Sbjct: 161 EQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVP-------DLSTLACGYLRNLTWT 213

Query: 140 LGLLAV-KPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSS 198
           L  L   K     L      L  LV LL  H D         V+  +  AI+ L    + 
Sbjct: 214 LSNLCRNKNPAPPLDAVEQILPTLVRLLH-HNDPE-------VLADSCWAISYLTDGPNE 265

Query: 199 IKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILML 258
               V  +G +P LV+LL  T+  +   A  A+  +    DE   ++++  AL     +L
Sbjct: 266 RIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLL 325

Query: 259 RSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQF 318
            +  + I  EA   + N+     +  ++V+  G +  ++G+LS    ++Q+EAA  +  +
Sbjct: 326 TNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNY 385

Query: 319 AA-TDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQV 363
            +    +  V++V  G + PL+ +L + D ++ ++   A+  + Q 
Sbjct: 386 TSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQA 431

>3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510

 Score =  138 bits (349), Expect = 1e-36
 Identities = 65/369 (17%), Positives = 124/369 (33%), Gaps = 47/369 (12%)

Query: 4   QRRQGPSVPERKGQKRKLDEETVIGDEQQQMQQREISSSSAGTSSSDARQALLSE---VS 60
             R           K           E+Q M   ++ +     + +D      +    V 
Sbjct: 12  VPRGSGMKETAA-AKF----------ERQHMDSPDLGTDDDDKAMADIGSNQGTVNWSVE 60

Query: 61  AQVNVLNTTFSWLEADRAAAKRATHVLAELAKNEE--VVNWIVEGGAVPALVKHLQAPPT 118
             V  +N+       +  +  +AT    +L   E+   ++ I+  G +P  V  L     
Sbjct: 61  DIVKGINSN------NLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDC 114

Query: 119 SEADRNLKPFEHEVEKGSAFALGLLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRA 177
           S                SA+AL  +A    E  + +VD GA+   ++LL           
Sbjct: 115 SPIQFE-----------SAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHA------ 157

Query: 178 VNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDT-----KVQRAAAGALR 232
              +  +A  A+ N+A + S+ +  V   G I PL+ LL   D         R     L 
Sbjct: 158 --HISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLS 215

Query: 233 TLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGA 292
            L    +           LPTL+ +L   D  +  ++   I  L        + V+  G 
Sbjct: 216 NLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGV 275

Query: 293 LQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREM 352
           +  ++ LL +        A   +G       +    ++  GA+     +L +P   +++ 
Sbjct: 276 VPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKE 335

Query: 353 SAFALGRLA 361
           + + +  + 
Sbjct: 336 ATWTMSNIT 344

>3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510

 Score =  118 bits (297), Expect = 2e-29
 Identities = 45/221 (20%), Positives = 81/221 (36%), Gaps = 13/221 (5%)

Query: 148 EHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEG 207
                   N ++  +V  +        S  + S ++    A   L+ E       +   G
Sbjct: 48  IGSNQGTVNWSVEDIVKGIN-------SNNLESQLQATQAARKLLSREKQPPIDNIIRAG 100

Query: 208 GIPPLVELLEFTD-TKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIH 266
            IP  V  L  TD + +Q  +A AL  +A    E    +V+  A+P  I +L S  + I 
Sbjct: 101 LIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHIS 160

Query: 267 YEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQ-----REAALLLGQFAAT 321
            +AV  +GN+       +  V+  GA+ P++ LL+     +      R     L      
Sbjct: 161 EQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRN 220

Query: 322 DSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQ 362
            +           +  L+ +L   D ++   S +A+  L  
Sbjct: 221 KNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTD 261

>3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510

 Score =  100 bits (250), Expect = 3e-23
 Identities = 49/251 (19%), Positives = 97/251 (38%), Gaps = 29/251 (11%)

Query: 83  ATHVLAELAKN-EEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALG 141
           +   ++ L     E +  +V+ G VP LVK L A             E  +   +  A+G
Sbjct: 252 SCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGAT------------ELPIVTPALRAIG 299

Query: 142 -LLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIK 200
            ++    E  Q ++D GAL+   +LL     +        + + A   ++N+        
Sbjct: 300 NIVTGTDEQTQKVIDAGALAVFPSLLTNPKTN--------IQKEATWTMSNITAGRQDQI 351

Query: 201 TRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKND-ENKNQIVECNALPTLILMLR 259
            +V   G +P LV +L   D K Q+ AA A+         E    +V C  +  L+ +L 
Sbjct: 352 QQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLS 411

Query: 260 SEDSAIHYEAVGVIGNL------VHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAAL 313
           ++D+ I    +  I N+      +  +  +   +   G L  +  L         + +  
Sbjct: 412 AKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLN 471

Query: 314 LLGQFAATDSD 324
           L+ ++ + + +
Sbjct: 472 LIEKYFSVEEE 482

>3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510

 Score = 56.9 bits (137), Expect = 5e-09
 Identities = 35/175 (20%), Positives = 66/175 (37%), Gaps = 29/175 (16%)

Query: 81  KRATHVLAEL-AKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFA 139
           K AT  ++ + A  ++ +  +V  G VP LV  L               + + +K +A+A
Sbjct: 334 KEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKA------------DFKTQKEAAWA 381

Query: 140 LGLLAVK--PEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLA---- 193
           +         E    +V  G +  L+NLL    D+        +I+   DAI+N+     
Sbjct: 382 ITNYTSGGTVEQIVYLVHCGIIEPLMNLL-SAKDTK-------IIQVILDAISNIFQAAE 433

Query: 194 --HENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIV 246
              E   +   +   GG+  +  L    +  V +A+   +       +E    +V
Sbjct: 434 KLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKYFSVEEEEDQNVV 488

>3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510

 Score = 42.7 bits (100), Expect = 2e-04
 Identities = 15/106 (14%), Positives = 42/106 (39%), Gaps = 2/106 (1%)

Query: 259 RSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQF 318
           + E   +    +G   +    +     +     +++ ++  ++S   ESQ +A     + 
Sbjct: 25  KFERQHMDSPDLGTDDDDKAMADIGSNQGTVNWSVEDIVKGINSNNLESQLQATQAARKL 84

Query: 319 AATD-SDCKVHIVQRGAVRPLIEMLQ-SPDVQLREMSAFALGRLAQ 362
            + +      +I++ G +   +  L  +    ++  SA+AL  +A 
Sbjct: 85  LSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIAS 130

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354

 Score =  176 bits (449), Expect = 4e-52
 Identities = 51/302 (16%), Positives = 106/302 (35%), Gaps = 31/302 (10%)

Query: 79  AAKRATHVLAELAK-----NEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVE 133
                 H+L  L +                  +      + AP                 
Sbjct: 2   GHHHHHHMLHLLEQIRAYCETCWEWQEAHEPGMDQDKNPMPAP------------VEHQI 49

Query: 134 KGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMD---SNCSRAVNSVIRRAADAIT 190
             +   L  L+   EH+  + + G L  +  LL+   +           ++ R A  A+T
Sbjct: 50  CPAVCVLMKLSFDEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALT 109

Query: 191 NLAHENSSIKTRV-RMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFK-NDENKNQIVEC 248
           NL   + + K  +  M+G +  LV  L+     +Q+  A  LR L+++ +  +K  + E 
Sbjct: 110 NLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREV 169

Query: 249 NALPTLI-LMLRSEDSAIHYEAVGVIGNL-VHSSPNIKKEVLAAGALQPVIGLLSSCCSE 306
            ++  L+   L  +  +     +  + NL  H + N        GAL  ++G L+     
Sbjct: 170 GSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQT 229

Query: 307 SQREAALL-------LGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGR 359
           +              +    AT+ D +  + +   ++ L++ L+S  + +   +   L  
Sbjct: 230 NTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWN 289

Query: 360 LA 361
           L+
Sbjct: 290 LS 291

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354

 Score =  144 bits (364), Expect = 9e-40
 Identities = 62/291 (21%), Positives = 109/291 (37%), Gaps = 21/291 (7%)

Query: 83  ATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGL 142
           A  VL +L+ +EE  + + E G + A+ + LQ         N   +   + + +  AL  
Sbjct: 52  AVCVLMKLSFDEEHRHAMNELGGLQAIAELLQVDCEMYGLTN-DHYSITLRRYAGMALTN 110

Query: 143 LAVKPEH--QQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLA-HENSSI 199
           L          L    G +  LV  LK   +         + +  A  + NL+   + + 
Sbjct: 111 LTFGDVANKATLCSMKGCMRALVAQLKSESED--------LQQVIASVLRNLSWRADVNS 162

Query: 200 KTRVRMEGGIPPLVELL-EFTDTKVQRAAAGALRTLAFKNDENKNQIV-ECNALPTLILM 257
           K  +R  G +  L+E   E       ++   AL  L+    ENK  I     AL  L+  
Sbjct: 163 KKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGT 222

Query: 258 L----RSEDSAIHYEAVGVIGNLVH---SSPNIKKEVLAAGALQPVIGLLSSCCSESQRE 310
           L    ++   AI     G++ N+     ++ + ++ +     LQ ++  L S        
Sbjct: 223 LTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSN 282

Query: 311 AALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLA 361
           A   L   +A +   +  +   GAV  L  ++ S    +   SA AL  L 
Sbjct: 283 ACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLM 333

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354

 Score =  121 bits (304), Expect = 3e-31
 Identities = 46/262 (17%), Positives = 93/262 (35%), Gaps = 31/262 (11%)

Query: 74  EADRAAAKRATHVLAELAKNEEVVNWIV--EGGAVPALVKHLQAPPTSEADRNLKPFEHE 131
                  + A   L  L   +      +    G + ALV  L++               +
Sbjct: 95  HYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSE------------SED 142

Query: 132 VEKGSAFALGLLAVK--PEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAI 189
           +++  A  L  L+ +     ++ + + G++  L+                S ++    A+
Sbjct: 143 LQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKE-------STLKSVLSAL 195

Query: 190 TNLAHENSSIKTR-VRMEGGIPPLVELL----EFTDTKVQRAAAGALRTL---AFKNDEN 241
            NL+   +  K     ++G +  LV  L    +     +  +  G LR +      N+++
Sbjct: 196 WNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDH 255

Query: 242 KNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLS 301
           +  + E N L TL+  L+S    I   A G + NL   +P  ++ +   GA+  +  L+ 
Sbjct: 256 RQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIH 315

Query: 302 SCCSESQREAALLLGQFAATDS 323
           S        +A  L    A   
Sbjct: 316 SKHKMIAMGSAAALRNLMANRP 337

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354

 Score =  105 bits (263), Expect = 1e-25
 Identities = 41/222 (18%), Positives = 83/222 (37%), Gaps = 24/222 (10%)

Query: 83  ATHVLAELAKNEEVVNW--IVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFAL 140
              VL  L+   +V +   + E G+V AL++                      K    AL
Sbjct: 147 IASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKK-----------ESTLKSVLSAL 195

Query: 141 GLLAVKPE--HQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAH---E 195
             L+         +   +GAL+ LV  L     +N       +I      + N++     
Sbjct: 196 WNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLA----IIESGGGILRNVSSLIAT 251

Query: 196 NSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLI 255
           N   +  +R    +  L++ L+     +   A G L  L+ +N +++  + +  A+  L 
Sbjct: 252 NEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLK 311

Query: 256 LMLRSEDSAIHYEAVGVIGNLVHSSPNIKK--EVLAAGALQP 295
            ++ S+   I   +   + NL+ + P   K   +++ G+  P
Sbjct: 312 NLIHSKHKMIAMGSAAALRNLMANRPAKYKDANIMSPGSSLP 353

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354

 Score = 47.1 bits (112), Expect = 5e-06
 Identities = 25/144 (17%), Positives = 52/144 (36%), Gaps = 24/144 (16%)

Query: 71  SWLEADRAAAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEH 130
           + L    +      +V + +A NE+    + E   +  L++HL++               
Sbjct: 230 NTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSH------------SL 277

Query: 131 EVEKGSAFALGLLAVK-PEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAI 189
            +   +   L  L+ + P+ Q+ + D GA+S L NL+              +   +A A+
Sbjct: 278 TIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIH--------SKHKMIAMGSAAAL 329

Query: 190 TNLAHENSSIKTR---VRMEGGIP 210
            NL     +       +     +P
Sbjct: 330 RNLMANRPAKYKDANIMSPGSSLP 353

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530

 Score =  177 bits (450), Expect = 1e-50
 Identities = 53/282 (18%), Positives = 117/282 (41%), Gaps = 22/282 (7%)

Query: 83  ATHVLAELAK-NEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALG 141
           A   L  +A         +V+  AVP  ++ L                 EV++ + +ALG
Sbjct: 151 AAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTG------------SVEVKEQAIWALG 198

Query: 142 LLAVK-PEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIK 200
            +A    +++  ++   A+  ++ L   +  S        +IR A   ++NL        
Sbjct: 199 NVAGDSTDYRDYVLQCNAMEPILGLFNSNKPS--------LIRTATWTLSNLCRGKKPQP 250

Query: 201 TRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRS 260
               +   +P L +L+   DT+    A  A+  L+    E    +++      L+ +L  
Sbjct: 251 DWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSH 310

Query: 261 EDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAA 320
           E + +   A+  +GN+V  +    + V+ AG L  +  LLSS     ++EA   +    A
Sbjct: 311 ESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITA 370

Query: 321 TDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQ 362
            +++    ++    + PL+++L+  + + ++ + +A+   + 
Sbjct: 371 GNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASS 412

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530

 Score =  134 bits (339), Expect = 4e-35
 Identities = 40/277 (14%), Positives = 105/277 (37%), Gaps = 21/277 (7%)

Query: 88  AELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKP 147
            E + + +   +      +P + + L +             + + +  +      +  + 
Sbjct: 71  DESSVSADQQFYSQLQQELPQMTQQLNSD------------DMQEQLSATVKFRQILSRE 118

Query: 148 EHQQL--IVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRM 205
               +  ++  G +  LV  ++ +           +   AA A+TN+A   S+    V  
Sbjct: 119 HRPPIDVVIQAGVVPRLVEFMRENQPEM-------LQLEAAWALTNIASGTSAQTKVVVD 171

Query: 206 EGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAI 265
              +P  ++LL     +V+  A  AL  +A  + + ++ +++CNA+  ++ +  S   ++
Sbjct: 172 ADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSL 231

Query: 266 HYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDC 325
              A   + NL           + + AL  +  L+ S  +E+  +A   +   +    + 
Sbjct: 232 IRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEA 291

Query: 326 KVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQ 362
              ++     + L+E+L      ++  +  A+G +  
Sbjct: 292 IQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVT 328

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530

 Score =  108 bits (270), Expect = 8e-26
 Identities = 38/201 (18%), Positives = 82/201 (40%), Gaps = 9/201 (4%)

Query: 164 NLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKV 223
            L KR       R        A     + +  ++  +   +++  +P + + L   D + 
Sbjct: 51  ALAKR-------RNFIPPTDGADSDEEDESSVSADQQFYSQLQQELPQMTQQLNSDDMQE 103

Query: 224 QRAAAGALR-TLAFKNDENKNQIVECNALPTLILMLRSEDSA-IHYEAVGVIGNLVHSSP 281
           Q +A    R  L+ ++    + +++   +P L+  +R      +  EA   + N+   + 
Sbjct: 104 QLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTS 163

Query: 282 NIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEM 341
              K V+ A A+   I LL +   E + +A   LG  A   +D + +++Q  A+ P++ +
Sbjct: 164 AQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGL 223

Query: 342 LQSPDVQLREMSAFALGRLAQ 362
             S    L   + + L  L +
Sbjct: 224 FNSNKPSLIRTATWTLSNLCR 244

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530

 Score = 68.9 bits (168), Expect = 8e-13
 Identities = 38/210 (18%), Positives = 77/210 (36%), Gaps = 36/210 (17%)

Query: 83  ATHVLAELAK-NEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALG 141
           A   +  +   N+     ++  G +PAL   L +P  +            ++K + + + 
Sbjct: 319 ALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKEN------------IKKEACWTIS 366

Query: 142 -LLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLA---HENS 197
            + A   E  Q ++D   +  LV LL+               + A  AI+N +    +  
Sbjct: 367 NITAGNTEQIQAVIDANLIPPLVKLLEVAEYK--------TKKEACWAISNASSGGLQRP 418

Query: 198 SIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKN-----------QIV 246
            I   +  +G I PL +LLE  D ++      AL  +    + +K             I 
Sbjct: 419 DIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILKMGEADKEARGLNINENADFIE 478

Query: 247 ECNALPTLILMLRSEDSAIHYEAVGVIGNL 276
           +   +  +    ++E+  I+ +A  +I   
Sbjct: 479 KAGGMEKIFNCQQNENDKIYEKAYKIIETY 508

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530

 Score = 46.9 bits (111), Expect = 8e-06
 Identities = 23/161 (14%), Positives = 62/161 (38%), Gaps = 19/161 (11%)

Query: 91  AKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAV----K 146
           A N E +  +++   +P LVK L+              E++ +K + +A+   +     +
Sbjct: 370 AGNTEQIQAVIDANLIPPLVKLLEVA------------EYKTKKEACWAISNASSGGLQR 417

Query: 147 PEHQQLIVDNGALSHLVNLLKR---HMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRV 203
           P+  + +V  G +  L +LL+     +      A+ ++++             +     +
Sbjct: 418 PDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILKMGEADKEARGLNINENADFI 477

Query: 204 RMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQ 244
              GG+  +    +  + K+   A   + T   + ++  ++
Sbjct: 478 EKAGGMEKIFNCQQNENDKIYEKAYKIIETYFGEEEDAVDE 518

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score =  169 bits (429), Expect = 1e-47
 Identities = 45/212 (21%), Positives = 88/212 (41%), Gaps = 11/212 (5%)

Query: 153 IVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPL 212
            +   A+  L  LL              V+ +AA  +  L+ + +S    +R    +  +
Sbjct: 13  ELATRAIPELTKLLNDEDQV--------VVNKAAVMVHQLSKKEASRHAIMRSPQMVSAI 64

Query: 213 VELLEFT-DTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVG 271
           V  ++ T D +  R  AG L  L+  + E    I +   +P L+ ML S   ++ + A+ 
Sbjct: 65  VRTMQNTNDVETARCTAGTLHNLS-HHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAIT 123

Query: 272 VIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQ 331
            + NL+      K  V  AG LQ ++ LL+    +        L   A  + + K+ I+ 
Sbjct: 124 TLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILA 183

Query: 332 RGAVRPLIEMLQSPDV-QLREMSAFALGRLAQ 362
            G  + L+ ++++    +L   ++  L  L+ 
Sbjct: 184 SGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV 215

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score =  158 bits (402), Expect = 8e-44
 Identities = 52/278 (18%), Positives = 98/278 (35%), Gaps = 21/278 (7%)

Query: 98  NWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIV-DN 156
           +  +   A+P L K L               +  V   +A  +  L+ K   +  I+   
Sbjct: 11  DAELATRAIPELTKLLNDE------------DQVVVNKAAVMVHQLSKKEASRHAIMRSP 58

Query: 157 GALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELL 216
             +S +V  ++   D           R  A  + NL+H +      +   GGIP LV++L
Sbjct: 59  QMVSAIVRTMQNTNDVE-------TARCTAGTLHNLSH-HREGLLAIFKSGGIPALVKML 110

Query: 217 EFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNL 276
                 V   A   L  L    +  K  +     L  ++ +L   +          +  L
Sbjct: 111 GSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQIL 170

Query: 277 VHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVR 336
            + +   K  +LA+G  Q ++ ++ +   E        + +  +  S  K  IV+ G ++
Sbjct: 171 AYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQ 230

Query: 337 PLIEMLQSPDVQLREMSAFALGRLAQVITVSVLPAILI 374
            L   L  P  +L +   + L  L+   T       L+
Sbjct: 231 ALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLL 268

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score =  155 bits (394), Expect = 1e-42
 Identities = 64/290 (22%), Positives = 104/290 (35%), Gaps = 28/290 (9%)

Query: 76  DRAAAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKG 135
           D   A+     L  L+ + E +  I + G +PALVK L +P               V   
Sbjct: 73  DVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVD------------SVLFY 120

Query: 136 SAFALG-LLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAH 194
           +   L  LL  +   +  +   G L  +V LL +             +    D +  LA+
Sbjct: 121 AITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNV--------KFLAITTDCLQILAY 172

Query: 195 ENSSIKTRVRMEGGIPPLVELL-EFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPT 253
            N   K  +   GG   LV ++  +T  K+    +  L+ L+     NK  IVE   +  
Sbjct: 173 GNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLS-VCSSNKPAIVEAGGMQA 231

Query: 254 LILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAAL 313
           L L L      +    +  + NL   S    K+    G L  ++ LL S        AA 
Sbjct: 232 LGLHLTDPSQRLVQNCLWTLRNL---SDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAG 288

Query: 314 LLGQFAATDSDCKVHIVQRGAVRPLIEMLQ--SPDVQLREMSAFALGRLA 361
           +L      +   K+ + Q G +  L+  +        + E +  AL  L 
Sbjct: 289 ILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLT 338

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score =  151 bits (383), Expect = 4e-41
 Identities = 55/289 (19%), Positives = 104/289 (35%), Gaps = 28/289 (9%)

Query: 81  KRATHVLAELA-KNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFA 139
              T  L  LA  N+E    I+  G   ALV  ++     +           +   ++  
Sbjct: 161 AITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEK-----------LLWTTSRV 209

Query: 140 LGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSI 199
           L +L+V   ++  IV+ G +  L   L              +++     + NL+   +  
Sbjct: 210 LKVLSVCSSNKPAIVEAGGMQALGLHL-TDPSQR-------LVQNCLWTLRNLSDAATK- 260

Query: 200 KTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLR 259
             +  MEG +  LV+LL   D  V   AAG L  L   N +NK  + +   +  L+  + 
Sbjct: 261 --QEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVL 318

Query: 260 --SEDSAIHYEAVGVIGNLVHSSPN---IKKEVLAAGALQPVIGLLSSCCSESQREAALL 314
              +   I   A+  + +L          +  V     L  V+ LL         +A + 
Sbjct: 319 RAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVG 378

Query: 315 LGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQV 363
           L +  A        + ++GA+  L+++L       +  ++    +   V
Sbjct: 379 LIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFV 427

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score =  128 bits (324), Expect = 5e-33
 Identities = 58/305 (19%), Positives = 97/305 (31%), Gaps = 48/305 (15%)

Query: 83  ATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGL 142
               L  L+            G +  LV+ L +                V   +A  L  
Sbjct: 247 CLWTLRNLSDAAT--KQEGMEGLLGTLVQLLGSDDI------------NVVTCAAGILSN 292

Query: 143 LAVK-PEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLA---HENSS 198
           L     +++ ++   G +  LV  + R  D         +   A  A+ +L     E   
Sbjct: 293 LTCNNYKNKMMVCQVGGIEALVRTVLRAGDRE------DITEPAICALRHLTSRHQEAEM 346

Query: 199 IKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILML 258
            +  VR+  G+P +V+LL          A   L         N   + E  A+P L+ +L
Sbjct: 347 AQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLL 406

Query: 259 RSEDS----------------------AIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPV 296
                                       I     G +  L     + +  +     +   
Sbjct: 407 VRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILA-RDVHNRIVIRGLNTIPLF 465

Query: 297 IGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFA 356
           + LL S     QR AA +L + A  D +    I   GA  PL E+L S +  +   +A  
Sbjct: 466 VQLLYSPIENIQRVAAGVLCELA-QDKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAV 524

Query: 357 LGRLA 361
           L R++
Sbjct: 525 LFRMS 529

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score = 92.9 bits (231), Expect = 1e-20
 Identities = 23/133 (17%), Positives = 51/133 (38%), Gaps = 5/133 (3%)

Query: 230 ALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLA 289
           A+  L    +   +  +   A+P L  +L  ED  +  +A  ++  L     +    + +
Sbjct: 1   AVVNLI---NYQDDAELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRS 57

Query: 290 AGALQPVIGLLSSCCS-ESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQ 348
              +  ++  + +    E+ R  A  L   +    +  + I + G +  L++ML SP   
Sbjct: 58  PQMVSAIVRTMQNTNDVETARCTAGTLHNLS-HHREGLLAIFKSGGIPALVKMLGSPVDS 116

Query: 349 LREMSAFALGRLA 361
           +   +   L  L 
Sbjct: 117 VLFYAITTLHNLL 129

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score = 49.4 bits (118), Expect = 1e-06
 Identities = 24/133 (18%), Positives = 41/133 (30%), Gaps = 20/133 (15%)

Query: 61  AQVNVLNTTFSWLEADRAAAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSE 120
             +      F          +  T  L  LA++      I     +P  V+ L +P    
Sbjct: 417 TSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIE-- 474

Query: 121 ADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNS 180
                      +++ +A  L  LA   E  + I   GA + L  LL    +         
Sbjct: 475 ----------NIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELL-HSRN-------EG 516

Query: 181 VIRRAADAITNLA 193
           V   AA  +  ++
Sbjct: 517 VATYAAAVLFRMS 529

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210

 Score =  159 bits (404), Expect = 4e-47
 Identities = 41/161 (25%), Positives = 79/161 (49%)

Query: 203 VRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSED 262
                 +P +V+ L   D +  ++A   L  +A   +E    +++  ALP L+ +L S +
Sbjct: 8   HHHGSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPN 67

Query: 263 SAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATD 322
             I  EA+  + N+        + V+ AGAL  ++ LLSS   +  +EA   L   A+  
Sbjct: 68  EQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG 127

Query: 323 SDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQV 363
           ++    ++  GA+  L+++L SP+ Q+ + + +AL  +A  
Sbjct: 128 NEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASG 168

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210

 Score =  150 bits (381), Expect = 8e-44
 Identities = 48/214 (22%), Positives = 93/214 (43%), Gaps = 8/214 (3%)

Query: 148 EHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEG 207
                      L  +V  L    D          ++ A   ++ +A   +     V   G
Sbjct: 3   GSHHHHHHGSELPQMVQQL-NSPDQQ-------ELQSALRKLSQIASGGNEQIQAVIDAG 54

Query: 208 GIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHY 267
            +P LV+LL   + ++ + A  AL  +A   +E    +++  ALP L+ +L S +  I  
Sbjct: 55  ALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQ 114

Query: 268 EAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKV 327
           EA+  + N+        + V+ AGAL  ++ LLSS   +  +EA   L   A+  ++ K 
Sbjct: 115 EALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQ 174

Query: 328 HIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLA 361
            + + GA+  L ++    + ++++ +  AL +L 
Sbjct: 175 AVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQ 208

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210

 Score =  143 bits (363), Expect = 3e-41
 Identities = 55/222 (24%), Positives = 98/222 (44%), Gaps = 21/222 (9%)

Query: 100 IVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVK-PEHQQLIVDNGA 158
              G  +P +V+ L +P            + +  + +   L  +A    E  Q ++D GA
Sbjct: 8   HHHGSELPQMVQQLNSP------------DQQELQSALRKLSQIASGGNEQIQAVIDAGA 55

Query: 159 LSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEF 218
           L  LV LL    +         +++ A  A++N+A   +     V   G +P LV+LL  
Sbjct: 56  LPALVQLL-SSPNEQ-------ILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSS 107

Query: 219 TDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVH 278
            + ++ + A  AL  +A   +E    +++  ALP L+ +L S +  I  EA+  + N+  
Sbjct: 108 PNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIAS 167

Query: 279 SSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAA 320
                K+ V  AGAL+ +  L S    + Q+EA   L +  +
Sbjct: 168 GGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS 209

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210

 Score =  115 bits (289), Expect = 2e-30
 Identities = 51/203 (25%), Positives = 92/203 (45%), Gaps = 22/203 (10%)

Query: 76  DRAAAKRATHVLAELAK-NEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEK 134
           D+   + A   L+++A    E +  +++ GA+PALV+ L +P              ++ +
Sbjct: 25  DQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSP------------NEQILQ 72

Query: 135 GSAFALG-LLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLA 193
            + +AL  + +   E  Q ++D GAL  LV LL    +         +++ A  A++N+A
Sbjct: 73  EALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNE--------QILQEALWALSNIA 124

Query: 194 HENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPT 253
              +     V   G +P LV+LL   + ++ + A  AL  +A   +E K  + E  AL  
Sbjct: 125 SGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEK 184

Query: 254 LILMLRSEDSAIHYEAVGVIGNL 276
           L  +   E+  I  EA   +  L
Sbjct: 185 LEQLQSHENEKIQKEAQEALEKL 207

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score =  165 bits (420), Expect = 9e-46
 Identities = 45/216 (20%), Positives = 88/216 (40%), Gaps = 11/216 (5%)

Query: 148 EHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEG 207
                 +   A+  L  LL              V+ +AA  +  L+ + +S    +R   
Sbjct: 5   YQDDAELATRAIPELTKLLNDEDQV--------VVNKAAVMVHQLSKKEASRHAIMRSPQ 56

Query: 208 GIPPLVELLEFT-DTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIH 266
            +  +V  ++ T D +  R  AG L  L+  + E    I +   +P L+ ML S   ++ 
Sbjct: 57  MVSAIVRTMQNTNDVETARCTAGTLHNLS-HHREGLLAIFKSGGIPALVKMLGSPVDSVL 115

Query: 267 YEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCK 326
           + A+  + NL+      K  V  AG LQ ++ LL+    +        L   A  + + K
Sbjct: 116 FYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESK 175

Query: 327 VHIVQRGAVRPLIEMLQSPDV-QLREMSAFALGRLA 361
           + I+  G  + L+ ++++    +L   ++  L  L+
Sbjct: 176 LIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLS 211

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score =  158 bits (400), Expect = 5e-43
 Identities = 52/283 (18%), Positives = 100/283 (35%), Gaps = 21/283 (7%)

Query: 98  NWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIV-DN 156
           +  +   A+P L K L               +  V   +A  +  L+ K   +  I+   
Sbjct: 8   DAELATRAIPELTKLLNDE------------DQVVVNKAAVMVHQLSKKEASRHAIMRSP 55

Query: 157 GALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELL 216
             +S +V  ++   D           R  A  + NL+H +      +   GGIP LV++L
Sbjct: 56  QMVSAIVRTMQNTNDVE-------TARCTAGTLHNLSH-HREGLLAIFKSGGIPALVKML 107

Query: 217 EFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNL 276
                 V   A   L  L    +  K  +     L  ++ +L   +          +  L
Sbjct: 108 GSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQIL 167

Query: 277 VHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVR 336
            + +   K  +LA+G  Q ++ ++ +   E        + +  +  S  K  IV+ G ++
Sbjct: 168 AYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQ 227

Query: 337 PLIEMLQSPDVQLREMSAFALGRLAQVITVSVLPAILIFIIIN 379
            L   L  P  +L +   + L  L+   T       L+  ++ 
Sbjct: 228 ALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQ 270

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score =  156 bits (396), Expect = 2e-42
 Identities = 64/290 (22%), Positives = 105/290 (36%), Gaps = 28/290 (9%)

Query: 76  DRAAAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKG 135
           D   A+     L  L+ + E +  I + G +PALVK L +P  S            V   
Sbjct: 70  DVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDS------------VLFY 117

Query: 136 SAFALGLLAV-KPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAH 194
           +   L  L + +   +  +   G L  +V LL +             +    D +  LA+
Sbjct: 118 AITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNV--------KFLAITTDCLQILAY 169

Query: 195 ENSSIKTRVRMEGGIPPLVELL-EFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPT 253
            N   K  +   GG   LV ++  +T  K+    +  L+ L+     NK  IVE   +  
Sbjct: 170 GNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLS-VCSSNKPAIVEAGGMQA 228

Query: 254 LILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAAL 313
           L L L      +    +  + NL   S    K+    G L  ++ LL S        AA 
Sbjct: 229 LGLHLTDPSQRLVQNCLWTLRNL---SDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAG 285

Query: 314 LLGQFAATDSDCKVHIVQRGAVRPLIEMLQ--SPDVQLREMSAFALGRLA 361
           +L      +   K+ + Q G +  L+  +        + E +  AL  L 
Sbjct: 286 ILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLT 335

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score =  151 bits (383), Expect = 1e-40
 Identities = 55/294 (18%), Positives = 104/294 (35%), Gaps = 28/294 (9%)

Query: 76  DRAAAKRATHVLAELA-KNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEK 134
           +       T  L  LA  N+E    I+  G   ALV  ++     +           +  
Sbjct: 153 NVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEK-----------LLW 201

Query: 135 GSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAH 194
            ++  L +L+V   ++  IV+ G +  L   L              +++     + NL+ 
Sbjct: 202 TTSRVLKVLSVCSSNKPAIVEAGGMQALGLHL-TDPSQR-------LVQNCLWTLRNLSD 253

Query: 195 ENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTL 254
                  +  MEG +  LV+LL   D  V   AAG L  L   N +NK  + +   +  L
Sbjct: 254 AA---TKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEAL 310

Query: 255 ILMLR--SEDSAIHYEAVGVIGNLVHSSPN---IKKEVLAAGALQPVIGLLSSCCSESQR 309
           +  +    +   I   A+  + +L          +  V     L  V+ LL         
Sbjct: 311 VRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLI 370

Query: 310 EAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQV 363
           +A + L +  A        + ++GA+  L+++L       +  ++    +   V
Sbjct: 371 KATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFV 424

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score =  128 bits (322), Expect = 2e-32
 Identities = 56/324 (17%), Positives = 100/324 (30%), Gaps = 54/324 (16%)

Query: 83  ATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGL 142
               L  L+            G +  LV+ L +                V   +A  L  
Sbjct: 244 CLWTLRNLSDAAT--KQEGMEGLLGTLVQLLGSDDI------------NVVTCAAGILSN 289

Query: 143 LAVK-PEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLA---HENSS 198
           L     +++ ++   G +  LV  + R  D         +   A  A+ +L     E   
Sbjct: 290 LTCNNYKNKMMVCQVGGIEALVRTVLRAGDRE------DITEPAICALRHLTSRHQEAEM 343

Query: 199 IKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILML 258
            +  VR+  G+P +V+LL          A   L         N   + E  A+P L+ +L
Sbjct: 344 AQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLL 403

Query: 259 RSEDSAIHYEAVGVIGNLVH---------------------SSPNIKKEVLAAGALQPVI 297
                                                       + +  +     +   +
Sbjct: 404 VRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFV 463

Query: 298 GLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFAL 357
            LL S     QR AA +L +  A D +    I   GA  PL E+L S +  +   +A  L
Sbjct: 464 QLLYSPIENIQRVAAGVLCEL-AQDKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVL 522

Query: 358 GRLA--------QVITVSVLPAIL 373
            R++        + ++V +  ++ 
Sbjct: 523 FRMSEDKPQDYKKRLSVELTSSLF 546

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score =  110 bits (277), Expect = 2e-26
 Identities = 54/254 (21%), Positives = 86/254 (33%), Gaps = 34/254 (13%)

Query: 81  KRATHVLAELA----KNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGS 136
           + A   L  L     + E   N +     +P +VK L  P               + K +
Sbjct: 325 EPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPS-----------HWPLIKAT 373

Query: 137 AFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRA--------------VNSVI 182
              +  LA+ P +   + + GA+  LV LL R       R               +  ++
Sbjct: 374 VGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIV 433

Query: 183 RRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENK 242
                A+  LA  +   +  +R    IP  V+LL      +QR AAG L  LA ++ E  
Sbjct: 434 EGCTGALHILA-RDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELA-QDKEAA 491

Query: 243 NQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSS 302
             I    A   L  +L S +  +   A  V+  +    P   K+ L+         L  +
Sbjct: 492 EAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMSEDKPQDYKKRLSVELTSS---LFRT 548

Query: 303 CCSESQREAALLLG 316
                   A L L 
Sbjct: 549 EPMAWNETADLGLD 562

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score = 95.0 bits (236), Expect = 3e-21
 Identities = 42/209 (20%), Positives = 71/209 (33%), Gaps = 22/209 (10%)

Query: 83  ATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEH----------EV 132
              ++  LA        + E GA+P LV+ L         R                 E+
Sbjct: 373 TVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEI 432

Query: 133 EKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNL 192
            +G   AL +LA    ++ +I     +   V LL           + ++ R AA  +  L
Sbjct: 433 VEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYS--------PIENIQRVAAGVLCEL 484

Query: 193 AHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALP 252
           A  +      +  EG   PL ELL   +  V   AA  L  ++    ++  + +      
Sbjct: 485 AQ-DKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMSEDKPQDYKKRLSVELTS 543

Query: 253 TLILMLRSEDSAIHYEAVGVIGNLVHSSP 281
           +L    R+E  A +  A   +       P
Sbjct: 544 SL---FRTEPMAWNETADLGLDIGAQGEP 569

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score = 91.2 bits (226), Expect = 5e-20
 Identities = 17/124 (13%), Positives = 43/124 (34%)

Query: 239 DENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIG 298
           +   +  +   A+P L  +L  ED  +  +A  ++  L     +    + +   +  ++ 
Sbjct: 4   NYQDDAELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVR 63

Query: 299 LLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALG 358
            + +                 +   +  + I + G +  L++ML SP   +   +   L 
Sbjct: 64  TMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLH 123

Query: 359 RLAQ 362
            L  
Sbjct: 124 NLLL 127

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780

 Score =  165 bits (420), Expect = 2e-45
 Identities = 62/365 (16%), Positives = 123/365 (33%), Gaps = 29/365 (7%)

Query: 22  DEETVIGDEQQQMQQREISSSSAGTSSSDARQALLSEVS------AQVNVLNTTFSWLEA 75
           + E        Q Q  +I    A T +   R A+  E              +   + ++ 
Sbjct: 64  EWEQGFNQSFNQEQVADIDGQYAMTRAQRVRAAMFPETLDEGMQIPSTQFDSAHPTNVQR 123

Query: 76  DRAAAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKG 135
               ++   H +  L   ++     +   A+P L K L               +  V   
Sbjct: 124 LAEPSQMLKHAVVNLINYQDDA--ELATRAIPELTKLLNDE------------DQVVVNK 169

Query: 136 SAFALGLLAVKPEHQQLIV-DNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAH 194
           +A  +  L+ K   +  I+     +S +V  ++   D   +R         +  + NL+H
Sbjct: 170 AAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARC-------TSGTLHNLSH 222

Query: 195 ENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTL 254
            +      +   GGIP LV +L      V   A   L  L    +  K  +     L  +
Sbjct: 223 -HREGLLAIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGAKMAVRLAGGLQKM 281

Query: 255 ILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALL 314
           + +L   +          +  L + +   K  +LA+G  Q ++ ++ +   E        
Sbjct: 282 VALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSR 341

Query: 315 LGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQVITVSVLPAILI 374
           + +  +  S  K  IV+ G ++ L   L  P  +L +   + L  L+   T       L+
Sbjct: 342 VLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLL 401

Query: 375 FIIIN 379
             ++ 
Sbjct: 402 GTLVQ 406

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780

 Score =  145 bits (368), Expect = 2e-38
 Identities = 56/303 (18%), Positives = 109/303 (35%), Gaps = 28/303 (9%)

Query: 76  DRAAAKRATHVLAELAK-NEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEK 134
           +       T  L  LA  N+E    I+  G   ALV  ++     +           +  
Sbjct: 289 NVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEK-----------LLW 337

Query: 135 GSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAH 194
            ++  L +L+V   ++  IV+ G +  L   L              +++     + NL+ 
Sbjct: 338 TTSRVLKVLSVCSSNKPAIVEAGGMQALGLHL-TDPSQ-------RLVQNCLWTLRNLSD 389

Query: 195 ENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTL 254
             +    +  MEG +  LV+LL   D  V   AAG L  L   N +NK  + +   +  L
Sbjct: 390 AATK---QEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEAL 446

Query: 255 ILMLR--SEDSAIHYEAVGVIGNLVHSSPN---IKKEVLAAGALQPVIGLLSSCCSESQR 309
           +  +    +   I   A+  + +L     +    +  V     L  V+ LL         
Sbjct: 447 VRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPSHWPLI 506

Query: 310 EAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQVITVSVL 369
           +A + L +  A        + ++GA+  L+++L       +  ++    +   V  V + 
Sbjct: 507 KATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRME 566

Query: 370 PAI 372
             +
Sbjct: 567 EIV 569

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780

 Score =  127 bits (319), Expect = 5e-32
 Identities = 54/306 (17%), Positives = 95/306 (31%), Gaps = 46/306 (15%)

Query: 81  KRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFAL 140
           +     L  L+            G +  LV+ L +             +  V   +A  L
Sbjct: 378 QNCLWTLRNLSDAAT--KQEGMEGLLGTLVQLLGSD------------DINVVTCAAGIL 423

Query: 141 GLLAVK-PEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLA---HEN 196
             L     +++ ++   G +  LV  + R  D         +   A  A+ +L     + 
Sbjct: 424 SNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDRE------DITEPAICALRHLTSRHQDA 477

Query: 197 SSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLIL 256
              +  VR+  G+P +V+LL          A   L         N   + E  A+P L+ 
Sbjct: 478 EMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQ 537

Query: 257 MLRSEDSAIHYEAVGVIGNLVH---------------------SSPNIKKEVLAAGALQP 295
           +L                                            + +  +     +  
Sbjct: 538 LLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEACTGALHILARDIHNRIVIRGLNTIPL 597

Query: 296 VIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAF 355
            + LL S     QR AA +L + A  D +    I   GA  PL E+L S +  +   +A 
Sbjct: 598 FVQLLYSPIENIQRVAAGVLCELA-QDKEAAEAIEAEGATAPLTELLHSRNEGVATYAAA 656

Query: 356 ALGRLA 361
            L R++
Sbjct: 657 VLFRMS 662

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780

 Score =  107 bits (268), Expect = 2e-25
 Identities = 50/233 (21%), Positives = 80/233 (34%), Gaps = 31/233 (13%)

Query: 81  KRATHVLAELAK----NEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGS 136
           + A   L  L       E   N +     +P +VK L  P               + K +
Sbjct: 461 EPAICALRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPSHWP-----------LIKAT 509

Query: 137 AFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRA--------------VNSVI 182
              +  LA+ P +   + + GA+  LV LL R       R               +  ++
Sbjct: 510 VGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIV 569

Query: 183 RRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENK 242
                A+  LA  +   +  +R    IP  V+LL      +QR AAG L  LA ++ E  
Sbjct: 570 EACTGALHILA-RDIHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELA-QDKEAA 627

Query: 243 NQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQP 295
             I    A   L  +L S +  +   A  V+  +    P   K+ L+      
Sbjct: 628 EAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMSEDKPQDYKKRLSVELTSS 680

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780

 Score = 83.9 bits (207), Expect = 1e-17
 Identities = 43/221 (19%), Positives = 73/221 (33%), Gaps = 22/221 (9%)

Query: 76  DRAAAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAP------PTSEADRNLKPFE 129
                K    ++  LA        + E GA+P LV+ L          TS      +  E
Sbjct: 502 HWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVE 561

Query: 130 H----EVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRA 185
                E+ +    AL +LA    ++ +I     +   V LL      N       + R A
Sbjct: 562 GVRMEEIVEACTGALHILARDIHNRIVIRGLNTIPLFVQLL-YSPIEN-------IQRVA 613

Query: 186 ADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQI 245
           A  +  LA  +      +  EG   PL ELL   +  V   AA  L  ++    ++  + 
Sbjct: 614 AGVLCELAQ-DKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMSEDKPQDYKKR 672

Query: 246 VECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKE 286
           +      +L    R+E    +      +       P   ++
Sbjct: 673 LSVELTSSL---FRTEPMTWNETGDLGLDIGAQGEPLGYRQ 710

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458

 Score =  153 bits (387), Expect = 3e-42
 Identities = 66/349 (18%), Positives = 124/349 (35%), Gaps = 22/349 (6%)

Query: 26  VIGDEQQQMQQREISSSSAGTSSSDARQALLSEVSAQVNVLNTTFSWLEADRAAAKR-AT 84
           +      +  +REI             +       A    ++   + + A        A 
Sbjct: 110 IHSQPDDKRGRREIRVLHLLEQIRAYCETCWEWQEAHEPGMDQDKNPMPAPVEHQICPAV 169

Query: 85  HVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA 144
            VL +L+ +EE  + + E G + A+ + LQ         N       + + +  AL  L 
Sbjct: 170 CVLMKLSFDEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSI-TLRRYAGMALTNLT 228

Query: 145 V-KPEHQQLIVDN-GALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLA-HENSSIKT 201
                ++  +    G +  LV  LK   +         + +  A  + NL+   + + K 
Sbjct: 229 FGDVANKATLCSMKGCMRALVAQLKSESED--------LQQVIASVLRNLSWRADVNSKK 280

Query: 202 RVRMEGGIPPLVELL-EFTDTKVQRAAAGALRTLAFKNDENKNQIVECN-ALPTLILML- 258
            +R  G +  L+E   E       ++   AL  L+    ENK  I   + AL  L+  L 
Sbjct: 281 TLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLT 340

Query: 259 ---RSEDSAIHYEAVGVIGNLVH---SSPNIKKEVLAAGALQPVIGLLSSCCSESQREAA 312
              ++   AI     G++ N+     ++ + ++ +     LQ ++  L S        A 
Sbjct: 341 YRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNAC 400

Query: 313 LLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLA 361
             L   +A +   +  +   GAV  L  ++ S    +   SA AL  L 
Sbjct: 401 GTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLM 449

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458

 Score =  133 bits (336), Expect = 5e-35
 Identities = 60/370 (16%), Positives = 126/370 (34%), Gaps = 41/370 (11%)

Query: 35  QQREISSSSAGTSSSDARQALLSEVSAQVNVLNTTFSWLE-ADRAAAKRATHVLAELAKN 93
                   S+G     +   L S +  +V ++ +  S L   D+    R    L  ++ +
Sbjct: 3   SSHHHHHHSSGLVPRGSHMRLTSHLGTKVEMVYSLLSMLGTHDKDDMSRT---LLAMSSS 59

Query: 94  EEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLI 153
           ++    + + G +P L++ L                 E    ++ AL  +       +  
Sbjct: 60  QDSCISMRQSGCLPLLIQLLHGNDKDSVLLGNSRGSKEARARASAALHNIIHSQPDDKRG 119

Query: 154 VDNGALSHLVNLLKRHMDSNCSRAVN-----------------SVIRRAADAITNLAHEN 196
                + HL+  ++ + ++                          I  A   +  L+  +
Sbjct: 120 RREIRVLHLLEQIRAYCETCWEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKLSF-D 178

Query: 197 SSIKTRVRMEGGIPPLVELLEF-----------TDTKVQRAAAGALRTLAFKNDENKNQI 245
              +  +   GG+  + ELL+                ++R A  AL  L F +  NK  +
Sbjct: 179 EEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATL 238

Query: 246 V-ECNALPTLILMLRSEDSAIHYEAVGVIGNL-VHSSPNIKKEVLAAGALQPVIGLLSSC 303
                 +  L+  L+SE   +      V+ NL   +  N KK +   G+++ ++      
Sbjct: 239 CSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEV 298

Query: 304 CSES-QREAALLLGQFAATDSDCKVHIVQ-RGAVRPLIEML----QSPDVQLREMSAFAL 357
             ES  +     L   +A  ++ K  I    GA+  L+  L    Q+  + + E     L
Sbjct: 299 KKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGIL 358

Query: 358 GRLAQVITVS 367
             ++ +I  +
Sbjct: 359 RNVSSLIATN 368

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458

 Score =  120 bits (303), Expect = 2e-30
 Identities = 48/274 (17%), Positives = 97/274 (35%), Gaps = 31/274 (11%)

Query: 62  QVNVLNTTFSWLEADRAAAKRATHVLAELAKNEEVVNWIV--EGGAVPALVKHLQAPPTS 119
           QV+      +         + A   L  L   +      +    G + ALV  L++    
Sbjct: 199 QVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSE--- 255

Query: 120 EADRNLKPFEHEVEKGSAFALGLLAVK--PEHQQLIVDNGALSHLVNLLKRHMDSNCSRA 177
                      ++++  A  L  L+ +     ++ + + G++  L+              
Sbjct: 256 ---------SEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKE----- 301

Query: 178 VNSVIRRAADAITNLAHENSSIKTR-VRMEGGIPPLVELL----EFTDTKVQRAAAGALR 232
             S ++    A+ NL+   +  K     ++G +  LV  L    +     +  +  G LR
Sbjct: 302 --STLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILR 359

Query: 233 TL---AFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLA 289
            +      N++++  + E N L TL+  L+S    I   A G + NL   +P  ++ +  
Sbjct: 360 NVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWD 419

Query: 290 AGALQPVIGLLSSCCSESQREAALLLGQFAATDS 323
            GA+  +  L+ S        +A  L    A   
Sbjct: 420 MGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRP 453

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458

 Score =  107 bits (269), Expect = 6e-26
 Identities = 38/210 (18%), Positives = 79/210 (37%), Gaps = 16/210 (7%)

Query: 81  KRATHVLAELAKNEEVVN--WIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAF 138
           +    VL  L+   +V +   + E G+V AL++                      K    
Sbjct: 261 QVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKK-----------ESTLKSVLS 309

Query: 139 ALGLLAVKPE--HQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHEN 196
           AL  L+         +   +GAL+ LV  L  +     + A+          +++L   N
Sbjct: 310 ALWNLSAHCTENKADICAVDGALAFLVGTL-TYRSQTNTLAIIESGGGILRNVSSLIATN 368

Query: 197 SSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLIL 256
              +  +R    +  L++ L+     +   A G L  L+ +N +++  + +  A+  L  
Sbjct: 369 EDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKN 428

Query: 257 MLRSEDSAIHYEAVGVIGNLVHSSPNIKKE 286
           ++ S+   I   +   + NL+ + P   K+
Sbjct: 429 LIHSKHKMIAMGSAAALRNLMANRPAKYKD 458

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} Length = 233

 Score =  125 bits (314), Expect = 8e-34
 Identities = 44/206 (21%), Positives = 85/206 (41%), Gaps = 26/206 (12%)

Query: 159 LSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEF 218
           L   V++L+          + S I  AA  I +   + S  + RV    GI  L++LL+ 
Sbjct: 10  LERAVSMLE------ADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKV 63

Query: 219 TDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLR-SEDSAIHYEAVGVIGNLV 277
            +  VQRA  GALR L F++++NK ++ E N +P L+ +L+ + D     +  G++ NL 
Sbjct: 64  QNEDVQRAVCGALRNLVFEDNDNKLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLS 123

Query: 278 HSSPNIKKEVLAAGALQPVIGLL----------------SSCCSESQREAALLLGQFAAT 321
            +     K ++   AL  +   +                     +        L   ++ 
Sbjct: 124 SNDKL--KNLMITEALLTLTENIIIPFSGWPEGDYPKANGLLDFDIFYNVTGCLRNMSSA 181

Query: 322 DSDCKVHIVQ-RGAVRPLIEMLQSPD 346
            +D +  + +  G +  L+  ++   
Sbjct: 182 GADGRKAMRRCDGLIDSLVHYVRGTI 207

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} Length = 233

 Score = 93.9 bits (233), Expect = 2e-22
 Identities = 27/149 (18%), Positives = 58/149 (38%), Gaps = 3/149 (2%)

Query: 205 MEGGIPPLVELLEFTDT--KVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSED 262
           ME  +   V +LE          AAA  ++   F+  E + ++ +   +  L+ +L+ ++
Sbjct: 6   MEMTLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQN 65

Query: 263 SAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATD 322
             +     G + NLV    + K EV     +  ++ +L        ++    L    +++
Sbjct: 66  EDVQRAVCGALRNLVFEDNDNKLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSN 125

Query: 323 SDCKVHIVQRGAVRPLIEMLQSPDVQLRE 351
              K  ++   A+  L E +  P     E
Sbjct: 126 DKLKNLMIT-EALLTLTENIIIPFSGWPE 153

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} Length = 233

 Score = 81.1 bits (200), Expect = 8e-18
 Identities = 42/226 (18%), Positives = 81/226 (35%), Gaps = 37/226 (16%)

Query: 106 VPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNL 165
           +   V  L+A     +              + F       K E ++ +     +  L+ L
Sbjct: 10  LERAVSMLEADHMLPSRI---------SAAATFIQHECFQKSEARKRVNQLRGILKLLQL 60

Query: 166 LKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELL-EFTDTKVQ 224
           LK   +         V R    A+ NL  E++  K  V    G+P L+++L +  D + +
Sbjct: 61  LKVQNE--------DVQRAVCGALRNLVFEDNDNKLEVAELNGVPRLLQVLKQTRDLETK 112

Query: 225 RAAAGALRTLAFKNDENKNQIVECNALPTLILML----------------RSEDSAIHYE 268
           +   G L  L+  ND+ KN ++   AL TL   +                   D  I Y 
Sbjct: 113 KQITGLLWNLS-SNDKLKNLMI-TEALLTLTENIIIPFSGWPEGDYPKANGLLDFDIFYN 170

Query: 269 AVGVIGNLVHSSPNIKKEVLAA-GALQPVIGLLSSCCSESQREAAL 313
             G + N+  +  + +K +    G +  ++  +    ++ Q +   
Sbjct: 171 VTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKA 216

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} Length = 233

 Score = 77.3 bits (190), Expect = 2e-16
 Identities = 28/228 (12%), Positives = 70/228 (30%), Gaps = 42/228 (18%)

Query: 63  VNVLNTTFSWLEADRAAAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEAD 122
           V++L           AAA    H   +     E    + +   +  L++ L+        
Sbjct: 14  VSMLEADHMLPSRISAAATFIQHECFQ---KSEARKRVNQLRGILKLLQLLKVQNE---- 66

Query: 123 RNLKPFEHEVEKGSAFALGLLAVK-PEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSV 181
                   +V++    AL  L  +  +++  + +   +  L+ +LK+  D          
Sbjct: 67  --------DVQRAVCGALRNLVFEDNDNKLEVAELNGVPRLLQVLKQTRDL-------ET 111

Query: 182 IRRAADAITNLAHENSSIKTRVRMEGGIPPLVELL----------------EFTDTKVQR 225
            ++    + NL+  +      +     +  L E +                   D  +  
Sbjct: 112 KKQITGLLWNLSSNDKLKNLMIT--EALLTLTENIIIPFSGWPEGDYPKANGLLDFDIFY 169

Query: 226 AAAGALRTLAFKNDENKNQIVEC-NALPTLILMLRSEDSAIHYEAVGV 272
              G LR ++    + +  +  C   + +L+  +R   +    +    
Sbjct: 170 NVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKAT 217

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} Length = 233

 Score = 59.6 bits (144), Expect = 2e-10
 Identities = 24/169 (14%), Positives = 51/169 (30%), Gaps = 26/169 (15%)

Query: 83  ATHVLAELA-KNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALG 141
               L  L  ++ +    + E   VP L++ L+     E  +                L 
Sbjct: 72  VCGALRNLVFEDNDNKLEVAELNGVPRLLQVLKQTRDLETKKQ-----------ITGLLW 120

Query: 142 LLAVKPEHQQLIVDNGALSHLVNLLKRH-------MDSNCSRAVNSVIRRAADAITNLAH 194
            L+   + + L++    L+   N++                     +       + N++ 
Sbjct: 121 NLSSNDKLKNLMITEALLTLTENIIIPFSGWPEGDYPKANGLLDFDIFYNVTGCLRNMSS 180

Query: 195 ENSSIKTRVR-MEGGIPPLVELLEFT------DTKVQRAAAGALRTLAF 236
             +  +  +R  +G I  LV  +  T      D K        L  L++
Sbjct: 181 AGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLSY 229

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} Length = 233

 Score = 46.5 bits (110), Expect = 5e-06
 Identities = 11/74 (14%), Positives = 27/74 (36%), Gaps = 2/74 (2%)

Query: 290 AGALQPVIGLLSS--CCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDV 347
              L+  + +L +          AA  +       S+ +  + Q   +  L+++L+  + 
Sbjct: 7   EMTLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNE 66

Query: 348 QLREMSAFALGRLA 361
            ++     AL  L 
Sbjct: 67  DVQRAVCGALRNLV 80

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Length = 810

 Score =  130 bits (327), Expect = 5e-33
 Identities = 54/318 (16%), Positives = 109/318 (34%), Gaps = 26/318 (8%)

Query: 49  SDARQALLSEVSAQVNVLNTTFSWLEADRAAAKRATHVLAELAKNEEVVNWIVEGGAVPA 108
            + R  +L+       +     +     +    R    L  +   +E+   +V+ G V A
Sbjct: 484 INKRITVLANEGITTALCALAKTESHNSQELIARV---LNAVCGLKELRGKVVQEGGVKA 540

Query: 109 LVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIVDNG---ALSHLVNL 165
           L++                   + ++ +  AL  + +    +           +  L+NL
Sbjct: 541 LLRMALEGTE------------KGKRHATQALARIGITINPEVSFSGQRSLDVIRPLLNL 588

Query: 166 LKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQR 225
           L++   +  +         +  A+TNLA  N S++ R+  E G+  +   L      + R
Sbjct: 589 LQQDCTALENFE-------SLMALTNLASMNESVRQRIIKEQGVSKIEYYLMEDHLYLTR 641

Query: 226 AAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKK 285
           AAA  L  L    D  K      + +  L L+   ED        G +  +   S    +
Sbjct: 642 AAAQCLCNLVMSEDVIKMFEGNNDRVKFLALLCEDEDEETATACAGALAIITSVSVKCCE 701

Query: 286 EVLA-AGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQS 344
           ++LA A  L  +  L+++     Q    +++        +    + +   +  L  + Q 
Sbjct: 702 KILAIASWLDILHTLIANPSPAVQHRGIVIILNMINAGEEIAKKLFETDIMELLSGLGQL 761

Query: 345 PDVQLREMSAFALGRLAQ 362
           PD    +    A   LA 
Sbjct: 762 PDDTRAKAREVATQCLAA 779

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Length = 810

 Score =  101 bits (253), Expect = 2e-23
 Identities = 62/425 (14%), Positives = 123/425 (28%), Gaps = 71/425 (16%)

Query: 13  ERKGQKRKLDEETVIGDEQQQMQQREISSSSAGTS------SSDARQALLSEVSAQVNVL 66
           E +G  R LD  + + D + +       SSS   S        +                
Sbjct: 191 EIRGLCRLLDVCSELEDYKYESAMDITGSSSTIASVCLARIYENMYYDEAKARFTDQIDE 250

Query: 67  NTTFSWLEADRAAAKRATHVLAELAK-NEEVVNWIVEGGAVPALVKHLQAPPTSEADRNL 125
                 L  D  +  R T  +  L     +V N +V    +  ++  +            
Sbjct: 251 YIKDKLLAPDMESKVRVTVAITALLNGPLDVGNQVVAREGILQMILAMATTDDEL----- 305

Query: 126 KPFEHEVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRA 185
                  ++ +   L   + K +  + + + G +  L  L     D         +  RA
Sbjct: 306 ------QQRVACECLIAASSKKDKAKALCEQG-VDILKRLYHSKNDG--------IRVRA 350

Query: 186 ADAITNLA-HENSSIKTRVRMEGGIPPLVELL------EFTDTKVQRAAAGALRTLAFKN 238
              +  L  +       R   +G    L E           D  ++R AA  L  L    
Sbjct: 351 LVGLCKLGSYGGQDAAIRPFGDGAALKLAEACRRFLIKPGKDKDIRRWAADGLAYLTLDA 410

Query: 239 DENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKE------------ 286
           +  +  I +  ++  L+ + R  + +  Y  V    NL ++    +              
Sbjct: 411 ECKEKLIEDKASIHALMDLARGGNQSCLYGVVTTFVNLCNAYEKQEMLPEMIELAKFAKQ 470

Query: 287 --------------------VLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCK 326
                               +   G    +  L  +    SQ   A +L        + +
Sbjct: 471 HIPEEHELDDVDFINKRITVLANEGITTALCALAKTESHNSQELIARVLNAV-CGLKELR 529

Query: 327 VHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQVITVSVLPAILIFIIINECQLEVL 386
             +VQ G V+ L+ M      + +  +  AL R+     +++ P +      +   +  L
Sbjct: 530 GKVVQEGGVKALLRMALEGTEKGKRHATQALARIG----ITINPEVSFSGQRSLDVIRPL 585

Query: 387 AFVLS 391
             +L 
Sbjct: 586 LNLLQ 590

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Length = 810

 Score = 93.4 bits (231), Expect = 1e-20
 Identities = 51/355 (14%), Positives = 104/355 (29%), Gaps = 40/355 (11%)

Query: 42  SSAGTSSSDARQALLSEVSAQVNVLNTTFSWLEADRAAAKRATHVLAELAKNEEVVNWIV 101
            S G   +  R                       D+   + A   LA L  + E    ++
Sbjct: 358 GSYGGQDAAIRPFGDGAALKLAEACRRFLIKPGKDKDIRRWAADGLAYLTLDAECKEKLI 417

Query: 102 E-GGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIVDNGALS 160
           E   ++ AL+   +    S               G       L    E Q+++     + 
Sbjct: 418 EDKASIHALMDLARGGNQS------------CLYGVVTTFVNLCNAYEKQEMLP---EMI 462

Query: 161 HLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTD 220
            L    K+H+           I +    + N              EG    L  L +   
Sbjct: 463 ELAKFAKQHIPEEHELDDVDFINKRITVLAN--------------EGITTALCALAKTES 508

Query: 221 TKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSS 280
              Q   A  L  +     E + ++V+   +  L+ M           A   +  +  + 
Sbjct: 509 HNSQELIARVLNAVC-GLKELRGKVVQEGGVKALLRMALEGTEKGKRHATQALARIGITI 567

Query: 281 PN--IKKEVLAAGALQPVIGLLSSCCSESQR-EAALLLGQFAATDSDCKVHIVQRGAVRP 337
                     +   ++P++ LL   C+  +  E+ + L   A+ +   +  I++   V  
Sbjct: 568 NPEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIKEQGVSK 627

Query: 338 LIEMLQSPDVQLREMSAFALGRLAQVITVSVLPAILIFIIINECQLEVLAFVLSE 392
           +   L    + L   +A  L  L           ++     N  +++ LA +  +
Sbjct: 628 IEYYLMEDHLYLTRAAAQCLCNLVMS------EDVIKMFEGNNDRVKFLALLCED 676

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Length = 296

 Score =  120 bits (303), Expect = 1e-31
 Identities = 36/207 (17%), Positives = 70/207 (33%), Gaps = 3/207 (1%)

Query: 158 ALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLV-ELL 216
            L  L   +          A       A + + +L  EN           G+  LV   L
Sbjct: 33  CLRVLSQPMPPTAGEAEQAADQQEREGALELLADLC-ENMDNAADFCQLSGMHLLVGRYL 91

Query: 217 EFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSE-DSAIHYEAVGVIGN 275
           E     ++  AA  + T +      + Q++   AL  L+ +L  +    +  +A+  I  
Sbjct: 92  EAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISC 151

Query: 276 LVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAV 335
           LV        + L       ++  +     + + ++A LL        + K  +   G V
Sbjct: 152 LVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMV 211

Query: 336 RPLIEMLQSPDVQLREMSAFALGRLAQ 362
           + L+ ++++      E    AL  L  
Sbjct: 212 QQLVALVRTEHSPFHEHVLGALCSLVT 238

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Length = 296

 Score =  114 bits (287), Expect = 2e-29
 Identities = 48/240 (20%), Positives = 91/240 (37%), Gaps = 21/240 (8%)

Query: 74  EADRAAAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVE 133
            AD+   + A  +LA+L +N +      +   +  LV              L+     + 
Sbjct: 51  AADQQEREGALELLADLCENMDNAADFCQLSGMHLLVGRY-----------LEAGAAGLR 99

Query: 134 KGSAFALGLLAVK-PEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNL 192
             +A  +G  +      Q+ ++  GAL  L+ LL R           +V  +A  AI+ L
Sbjct: 100 WRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACD-------TVRVKALFAISCL 152

Query: 193 AHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALP 252
             E  +   +     G   L+  ++    K++  +A  L+ L   + E+K  +     + 
Sbjct: 153 VREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQ 212

Query: 253 TLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAA 312
            L+ ++R+E S  H   +G + +LV   P   +E         +  LL   C   Q+   
Sbjct: 213 QLVALVRTEHSPFHEHVLGALCSLVTDFPQGVRECREPELG--LEELLRHRCQLLQQHEE 270

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Length = 296

 Score =  105 bits (262), Expect = 7e-26
 Identities = 37/247 (14%), Positives = 86/247 (34%), Gaps = 10/247 (4%)

Query: 110 VKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRH 169
           ++ L  P    A    +  + +  +G+   L  L    ++         +  LV      
Sbjct: 34  LRVLSQPMPPTAGEAEQAADQQEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEA 93

Query: 170 MDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEF-TDTKVQRAAA 228
             +        +  RAA  I   +   ++I+ +V   G +  L+ LL+      V+  A 
Sbjct: 94  GAAG-------LRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKAL 146

Query: 229 GALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVL 288
            A+  L  + +    Q +  +    L+  ++ +   +  ++  ++ NL+   P  K  + 
Sbjct: 147 FAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLC 206

Query: 289 AAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQ 348
           + G +Q ++ L+ +  S         L               +      L E+L+     
Sbjct: 207 SMGMVQQLVALVRTEHSPFHEHVLGALCSLVTDFPQGVRECREPEL--GLEELLRHRCQL 264

Query: 349 LREMSAF 355
           L++   +
Sbjct: 265 LQQHEEY 271

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457

 Score =  118 bits (295), Expect = 2e-29
 Identities = 49/216 (22%), Positives = 81/216 (37%), Gaps = 27/216 (12%)

Query: 159 LSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEF 218
           +   V  L    +              A  I +   ++ S K +V   GGI  LV+LL  
Sbjct: 4   IPKAVQYLSSQDEK--------YQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRS 55

Query: 219 TDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLI-LMLRSEDSAIHYEAVGVIGNLV 277
            +  VQ+AAAGALR L F++  NK +    N +   + L+ R+ ++ I  +  G++ NL 
Sbjct: 56  PNQNVQQAAAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLS 115

Query: 278 HSSPNIKKEVLAAGALQPVIGLLSSCCS----------------ESQREAALLLGQFAAT 321
            +     KE L A AL  +   +    S                E    A   L   ++ 
Sbjct: 116 STDEL--KEELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSA 173

Query: 322 DSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFAL 357
           D+  +      G +  L+  +Q+     R       
Sbjct: 174 DAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVE 209

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457

 Score = 98.0 bits (243), Expect = 2e-22
 Identities = 46/274 (16%), Positives = 100/274 (36%), Gaps = 41/274 (14%)

Query: 103 GGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVK-PEHQQLIVDNGALSH 161
           G  +P  V++L +             + + +   A+ +     +    +Q +   G +  
Sbjct: 1   GLTIPKAVQYLSSQ------------DEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICK 48

Query: 162 LVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELL-EFTD 220
           LV+LL+            +V + AA A+ NL   +++ K   R + GI   V LL    +
Sbjct: 49  LVDLLRSPNQ--------NVQQAAAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGN 100

Query: 221 TKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILML----------------RSEDSA 264
            ++Q+   G L  L+   DE K +++  +ALP L   +                   D  
Sbjct: 101 AEIQKQLTGLLWNLSS-TDELKEELIA-DALPVLADRVIIPFSGWCDGNSNMSREVVDPE 158

Query: 265 IHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSD 324
           + + A G + NL  +    +     +G +  ++  + +C + S+ +   +        + 
Sbjct: 159 VFFNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNL 218

Query: 325 C-KVHIVQRGAVRPLIEMLQSPDVQLREMSAFAL 357
             ++        R L    ++   +      F+ 
Sbjct: 219 SYRLDAEVPTRYRQLEYNARNAYTEKSSTGCFSN 252

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457

 Score = 97.6 bits (242), Expect = 2e-22
 Identities = 44/279 (15%), Positives = 94/279 (33%), Gaps = 15/279 (5%)

Query: 46  TSSSDARQALLSE---VSAQVNVLNTTFSWLEADRAAAKRATHVLAELAKNEEVVNWIVE 102
           +S+   RQ + +    + + +  +    +    D  + +    VL  L+   +       
Sbjct: 171 SSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRY 230

Query: 103 GGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIVDNGALSHL 162
                          ++    N    +  +       L      P+    +  + A+   
Sbjct: 231 RQLEYNARNAYTEKSSTGCFSNKS--DKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTY 288

Query: 163 VNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTK 222
           +NL+ +        A    ++    +   ++   S +      E G+P +  LL+  ++ 
Sbjct: 289 LNLMGKSKKDATLEACAGALQNLTASKGLMSSGMSQLI--GLKEKGLPQIARLLQSGNSD 346

Query: 223 VQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRS------EDSAIHYEAVGVIGNL 276
           V R+ A  L  ++ ++      +      P +  +L S          I   A   + NL
Sbjct: 347 VVRSGASLLSNMS-RHPLLHRVMGNQ-VFPEVTRLLTSHTGNTSNSEDILSSACYTVRNL 404

Query: 277 VHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLL 315
           + S P + K+  ++  L  +I L  S  S    EAA LL
Sbjct: 405 MASQPQLAKQYFSSSMLNNIINLCRSSASPKAAEAARLL 443

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457

 Score = 84.9 bits (209), Expect = 4e-18
 Identities = 42/349 (12%), Positives = 105/349 (30%), Gaps = 55/349 (15%)

Query: 76  DRAAAKRATHVLAELAK-NEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEK 134
           D        + +      +E     + + G +  LV  L++P               V++
Sbjct: 15  DEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQ------------NVQQ 62

Query: 135 GSAFALGLLAVK-PEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLA 193
            +A AL  L  +   ++        +   V+LL+R  ++        + ++    + NL+
Sbjct: 63  AAAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNA-------EIQKQLTGLLWNLS 115

Query: 194 HENSSIKTRVRMEGGIPPLVELL----------------EFTDTKVQRAAAGALRTLAFK 237
             +   +  +     +P L + +                E  D +V   A G LR L+  
Sbjct: 116 STDELKEELIA--DALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLS-S 172

Query: 238 NDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVI 297
            D  +  +   + L   ++       A        + N +    N+   + A    +   
Sbjct: 173 ADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQ 232

Query: 298 GLLSSCCSESQREAALLLGQFA---------------ATDSDCKVHIVQRGAVRPLIEML 342
              ++  + +++ +       +                T+      +    A+R  + ++
Sbjct: 233 LEYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLM 292

Query: 343 QSPDVQLREMSAFALGRLAQVITVSVLPAILIFIIINECQLEVLAFVLS 391
                     +     +        +   +   I + E  L  +A +L 
Sbjct: 293 GKSKKDATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQ 341

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457

 Score = 80.6 bits (198), Expect = 9e-17
 Identities = 36/317 (11%), Positives = 93/317 (29%), Gaps = 43/317 (13%)

Query: 76  DRAAAKRATHVLAELA-KNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEK 134
           ++   + A   L  L  ++            +   V  L+    +E  +           
Sbjct: 57  NQNVQQAAAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQ---------- 106

Query: 135 GSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVN--------SVIRRAA 186
                L  L+   E ++ ++   AL  L + +       C    N         V   A 
Sbjct: 107 -LTGLLWNLSSTDELKEELIA-DALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNAT 164

Query: 187 DAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIV 246
             + NL+  ++  +T     G I  L+  ++      +     ++            ++ 
Sbjct: 165 GCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDK-SVENCMCVLHNLSYRLD 223

Query: 247 ECNALPTLILMLRSEDSAIHYEAVGVIGNLVH---------------SSPNIKKEVLAAG 291
                    L   + ++     + G   N                  ++P     +  + 
Sbjct: 224 AEVPTRYRQLEYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSD 283

Query: 292 ALQPVIGLLSSCCSESQREAA------LLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSP 345
           A++  + L+     ++  EA       L   +   +    ++  ++   +  +  +LQS 
Sbjct: 284 AIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSG 343

Query: 346 DVQLREMSAFALGRLAQ 362
           +  +    A  L  +++
Sbjct: 344 NSDVVRSGASLLSNMSR 360

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457

 Score = 76.4 bits (187), Expect = 2e-15
 Identities = 40/321 (12%), Positives = 90/321 (28%), Gaps = 19/321 (5%)

Query: 55  LLSEVSAQVNVLNTTFSWLEADRAAAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQ 114
            +    +     N+  S    D      AT  L  L+  +     +     +   +    
Sbjct: 135 RVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYV 194

Query: 115 APPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNC 174
               + +  + K  E+ +      +  L A  P   + +      +      ++      
Sbjct: 195 QNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQL----EYNARNAYTEKSSTGCF 250

Query: 175 SRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQR-AAAGALRT 233
           S   + ++    D        N      +     I   + L+  +       A AGAL+ 
Sbjct: 251 SNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQN 310

Query: 234 LAFKNDENKNQ-----IVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVL 288
           L        +       ++   LP +  +L+S +S +      ++ N+          V+
Sbjct: 311 LTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHPLL--HRVM 368

Query: 289 AAGALQPVIGLLSSCCS------ESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEML 342
                  V  LL+S         +    A   +    A+             +  +I + 
Sbjct: 369 GNQVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSMLNNIINLC 428

Query: 343 QSPD-VQLREMSAFALGRLAQ 362
           +S    +  E +   L  +  
Sbjct: 429 RSSASPKAAEAARLLLSDMWS 449

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457

 Score = 56.8 bits (136), Expect = 5e-09
 Identities = 17/69 (24%), Positives = 32/69 (46%)

Query: 293 LQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREM 352
           +   +  LSS   + Q   A  +      D   K  + Q G +  L+++L+SP+  +++ 
Sbjct: 4   IPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQA 63

Query: 353 SAFALGRLA 361
           +A AL  L 
Sbjct: 64  AAGALRNLV 72

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Length = 584

 Score =  110 bits (275), Expect = 1e-26
 Identities = 51/220 (23%), Positives = 84/220 (38%), Gaps = 31/220 (14%)

Query: 146 KPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRM 205
           K            L  ++ +L   +D+        V   AA  + +L + N  +KT VR 
Sbjct: 37  KGGPPPPNWRQPELPEVIAMLGFRLDA--------VKSNAAAYLQHLCYRNDKVKTDVRK 88

Query: 206 EGGIPPLVELLEFTDTKVQRAAAGALRTLAF-KNDENKNQIVECNALPTLILMLR-SEDS 263
             GIP LV LL+    +V   A GAL+ ++F ++ +NK  I  C+ +P L+ +LR + D 
Sbjct: 89  LKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQDNKIAIKNCDGVPALVRLLRKARDM 148

Query: 264 AIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDS 323
            +     G + NL  SS +  K  +   AL  +   +    S  +RE             
Sbjct: 149 DLTEVITGTLWNL--SSHDSIKMEIVDHALHALTDEVIIPHSGWEREPNEDCKPRHIEWE 206

Query: 324 D-------------------CKVHIVQRGAVRPLIEMLQS 344
                                +      G V  LI ++Q+
Sbjct: 207 SVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQA 246

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Length = 584

 Score =  100 bits (248), Expect = 5e-23
 Identities = 32/173 (18%), Positives = 65/173 (37%), Gaps = 3/173 (1%)

Query: 175 SRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTL 234
             A  +   R + A  +   +        R +  +P ++ +L F    V+  AA  L+ L
Sbjct: 17  YWAPLAQHERGSLASLDSLRKGGPPPPNWR-QPELPEVIAMLGFRLDAVKSNAAAYLQHL 75

Query: 235 AFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNL-VHSSPNIKKEVLAAGAL 293
            ++ND+ K  + +   +P L+ +L      +H  A G + N+      + K  +     +
Sbjct: 76  CYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQDNKIAIKNCDGV 135

Query: 294 QPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPD 346
             ++ LL         E         ++    K+ IV   A+  L + +  P 
Sbjct: 136 PALVRLLRKARDMDLTEVITGTLWNLSSHDSIKMEIV-DHALHALTDEVIIPH 187

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Length = 584

 Score = 90.0 bits (222), Expect = 1e-19
 Identities = 50/250 (20%), Positives = 88/250 (35%), Gaps = 43/250 (17%)

Query: 100 IVEGGAVPALVKHLQAPPTSEA------------DRNLKPFEHEV--------EKGSAFA 139
               G V AL+  +QA    +              RNL    H          E     A
Sbjct: 231 RECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQEAAPNVA 290

Query: 140 LGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHEN--- 196
                      +L+     +   ++LLK            +++  +A AI NL       
Sbjct: 291 NNTGTSPARGYELLFQPEVVRIYISLLKESKT-------PAILEASAGAIQNLCAGRWTY 343

Query: 197 -SSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLI 255
              I++ +R E  +  + +LL     +V +AA+GALR LA  +  NK  I   +A+P L+
Sbjct: 344 GRYIRSALRQEKALSAIADLLTNEHERVVKAASGALRNLA-VDARNKELIG-KHAIPNLV 401

Query: 256 LMLRSEDSAIHYE--------AVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSES 307
             L        +          +  I  ++  +    K++     ++ ++ +  S     
Sbjct: 402 KNLPGGQQNSSWNFSEDTVISILNTINEVIAENLEAAKKLRETQGIEKLVLINKSGNRSE 461

Query: 308 --QREAALLL 315
              R AAL+L
Sbjct: 462 KEVRAAALVL 471

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Length = 584

 Score = 86.5 bits (213), Expect = 2e-18
 Identities = 58/345 (16%), Positives = 113/345 (32%), Gaps = 79/345 (22%)

Query: 76  DRAAAKRATHVLAELAK-NEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEK 134
             A    A   L  L   N++V   + +   +P LV  L  P              EV  
Sbjct: 61  LDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKK------------EVHL 108

Query: 135 GSAFALGLLAVK--PEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNL 192
           G+  AL  ++     +++  I +   +  LV LL++  D         +       + NL
Sbjct: 109 GACGALKNISFGRDQDNKIAIKNCDGVPALVRLLRKARD-------MDLTEVITGTLWNL 161

Query: 193 AHENSSIKTRVRMEGGIPPLVELL------------------EFTDTKVQRAAAGALRTL 234
           +  +S     V     +  L + +                        V    AG LR +
Sbjct: 162 SSHDSIKMEIVD--HALHALTDEVIIPHSGWEREPNEDCKPRHIEWESVLTNTAGCLRNV 219

Query: 235 AFKNDENKNQIVECNAL-PTLILMLRSE------DSAIHYEAVGVIGNL----------- 276
           + +  E + ++ EC+ L   LI ++++E      DS +    V ++ NL           
Sbjct: 220 SSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQA 279

Query: 277 --------------VHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATD 322
                           S     + +     ++  I LL    + +  EA+    Q     
Sbjct: 280 ERYQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAG 339

Query: 323 S-----DCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQ 362
                   +  + Q  A+  + ++L +   ++ + ++ AL  LA 
Sbjct: 340 RWTYGRYIRSALRQEKALSAIADLLTNEHERVVKAASGALRNLAV 384

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Length = 584

 Score = 83.1 bits (204), Expect = 2e-17
 Identities = 48/326 (14%), Positives = 112/326 (34%), Gaps = 47/326 (14%)

Query: 76  DRAAAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPT------SEADRNLKPFE 129
           D    +  T  L  L+ ++ +   IV+   + AL   +  P +      +E  +      
Sbjct: 147 DMDLTEVITGTLWNLSSHDSIKMEIVDHA-LHALTDEVIIPHSGWEREPNEDCKPRHIEW 205

Query: 130 HEVEKGSAFALGLLAVKPEH--QQLIVDNGALSHLVNLLKRHMDSNCSRAV--------- 178
             V   +A  L  ++ +     ++L   +G +  L+ +++  +    S +          
Sbjct: 206 ESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLL 265

Query: 179 --------------NSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTK-V 223
                               A +   N     +     +     +   + LL+ + T  +
Sbjct: 266 RNLSYQVHREIPQAERYQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAI 325

Query: 224 QRAAAGALRTLAFKN----DENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHS 279
             A+AGA++ L           ++ + +  AL  +  +L +E   +   A G + NL   
Sbjct: 326 LEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADLLTNEHERVVKAASGALRNLAVD 385

Query: 280 SPNIKKEVLAAGALQPVIGLLSSCCSESQRE--------AALLLGQFAATDSDCKVHIVQ 331
           + N  KE++   A+  ++  L      S               + +  A + +    + +
Sbjct: 386 ARN--KELIGKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAENLEAAKKLRE 443

Query: 332 RGAVRPLIEMLQSPDVQLREMSAFAL 357
              +  L+ + +S +   +E+ A AL
Sbjct: 444 TQGIEKLVLINKSGNRSEKEVRAAAL 469

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Length = 584

 Score = 70.4 bits (171), Expect = 3e-13
 Identities = 39/216 (18%), Positives = 79/216 (36%), Gaps = 17/216 (7%)

Query: 24  ETVIGDEQQQMQQREISSSSAGTSSSDARQALLSE--VSAQVNVLNTTFSWLEADRAAAK 81
              I   ++  +     +++ GTS +   + L     V   +++L  + +    + +A  
Sbjct: 273 HREIPQAERYQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGA 332

Query: 82  RATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALG 141
                         + + + +  A+ A+   L                  V K ++ AL 
Sbjct: 333 IQNLCAGRWTYGRYIRSALRQEKALSAIADLLTNE------------HERVVKAASGALR 380

Query: 142 LLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKT 201
            LAV   +++LI    A+ +LV  L     ++        +    + I  +  EN     
Sbjct: 381 NLAVDARNKELI-GKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAENLEAAK 439

Query: 202 RVRMEGGIPPLVELLEFTD--TKVQRAAAGALRTLA 235
           ++R   GI  LV + +  +   K  RAAA  L+T+ 
Sbjct: 440 KLRETQGIEKLVLINKSGNRSEKEVRAAALVLQTIW 475

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Length = 584

 Score = 63.0 bits (152), Expect = 6e-11
 Identities = 30/196 (15%), Positives = 62/196 (31%), Gaps = 26/196 (13%)

Query: 91  AKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQ 150
                    + +   V   +  L+   T          E           G        +
Sbjct: 295 TSPARGYELLFQPEVVRIYISLLKESKTPAI------LEASAGAIQNLCAGRWTYGRYIR 348

Query: 151 QLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIP 210
             +    ALS + +LL    +         V++ A+ A+ NLA  ++  K  +  +  IP
Sbjct: 349 SALRQEKALSAIADLLTNEHER--------VVKAASGALRNLA-VDARNK-ELIGKHAIP 398

Query: 211 PLVELLEFTDTK--------VQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSED 262
            LV+ L                 +    +  +  +N E   ++ E   +  L+L+ +S +
Sbjct: 399 NLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAENLEAAKKLRETQGIEKLVLINKSGN 458

Query: 263 SA--IHYEAVGVIGNL 276
            +      A  V+  +
Sbjct: 459 RSEKEVRAAALVLQTI 474

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Length = 584

 Score = 58.4 bits (140), Expect = 2e-09
 Identities = 13/77 (16%), Positives = 26/77 (33%)

Query: 285 KEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQS 344
                   L  VI +L       +  AA  L      +   K  + +   +  L+ +L  
Sbjct: 42  PPNWRQPELPEVIAMLGFRLDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDH 101

Query: 345 PDVQLREMSAFALGRLA 361
           P  ++   +  AL  ++
Sbjct: 102 PKKEVHLGACGALKNIS 118

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Length = 280

 Score = 62.1 bits (151), Expect = 4e-11
 Identities = 38/269 (14%), Positives = 75/269 (27%), Gaps = 62/269 (23%)

Query: 105 AVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVN 164
           AV   ++                  +      AF LG + +  + +  + +      L N
Sbjct: 55  AVRLAIEFCSDK------------NYIRRDIGAFILGQIKICKKCEDNVFN-----ILNN 97

Query: 165 LLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQ 224
           +      +        V   A ++      +N     ++     +           T V+
Sbjct: 98  MALNDKSAC-------VRATAIESTAQRCKKNPIYSPKI-----VEQSQITAFDKSTNVR 145

Query: 225 RAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIK 284
           RA A A+  +  K             +P LI +L+  +  +   A   I    + +    
Sbjct: 146 RATAFAISVINDKA-----------TIPLLINLLKDPNGDVRNWAAFAININKYDNS--- 191

Query: 285 KEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQS 344
                       + +L     E + EA + L                   +  L + L+ 
Sbjct: 192 ------DIRDCFVEMLQDKNEEVRIEAIIGLSYRKDKR-----------VLSVLCDELKK 234

Query: 345 PDVQLREMSAFALGRLAQVITVSVLPAIL 373
             V   +    A G L     + VL  +L
Sbjct: 235 NTV--YDDIIEAAGELGDKTLLPVLDTML 261

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Length = 280

 Score = 56.7 bits (137), Expect = 3e-09
 Identities = 25/231 (10%), Positives = 61/231 (26%), Gaps = 48/231 (20%)

Query: 131 EVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAIT 190
             ++ ++   GL     +             L  LL    D N     +     +A  + 
Sbjct: 5   YQKRKASKEYGLYNQCKK--------LNDDELFRLLD---DHN-----SLKRISSARVLQ 48

Query: 191 NLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNA 250
               +++           +   +E     +   +   A  L  +        N       
Sbjct: 49  LRGGQDA-----------VRLAIEFCSDKNYIRRDIGAFILGQIKICKKCEDNVFN---- 93

Query: 251 LPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQRE 310
                + L  + + +   A+         +P    +      ++          +  +R 
Sbjct: 94  -ILNNMALNDKSACVRATAIESTAQRCKKNPIYSPK-----IVEQSQITAFDKSTNVRRA 147

Query: 311 AALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLA 361
            A  +                +  +  LI +L+ P+  +R  +AFA+    
Sbjct: 148 TAFAISVIND-----------KATIPLLINLLKDPNGDVRNWAAFAININK 187

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Length = 280

 Score = 44.0 bits (104), Expect = 4e-05
 Identities = 17/155 (10%), Positives = 37/155 (23%), Gaps = 27/155 (17%)

Query: 219 TDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVH 278
           ++T  +R A+                         L  +L   +S     +  V+     
Sbjct: 2   SNTYQKRKASKEYGLYNQCKKL---------NDDELFRLLDDHNSLKRISSARVLQLRGG 52

Query: 279 SSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPL 338
                        A++  I   S      +   A +LGQ             +      L
Sbjct: 53  -----------QDAVRLAIEFCSDKNYIRRDIGAFILGQIKICKK------CEDNVFNIL 95

Query: 339 IE-MLQSPDVQLREMSAFALGRLAQVITVSVLPAI 372
               L      +R  +  +  +  +   +     +
Sbjct: 96  NNMALNDKSACVRATAIESTAQRCKKNPIYSPKIV 130

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Length = 211

 Score = 60.5 bits (147), Expect = 8e-11
 Identities = 49/223 (21%), Positives = 82/223 (36%), Gaps = 52/223 (23%)

Query: 151 QLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIP 210
            L  D   +   +  L+   D +       V R AA A+  +  E +           + 
Sbjct: 13  PLRADPEKVEMYIKNLQ---DDS-----YYVRRAAAYALGKIGDERA-----------VE 53

Query: 211 PLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAV 270
           PL++ L+  D  V+RAAA AL  +  +            A+  LI  L+ ED  +   A 
Sbjct: 54  PLIKALKDEDAWVRRAAADALGQIGDER-----------AVEPLIKALKDEDGWVRQSAA 102

Query: 271 GVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIV 330
             +G +               A++P+I  L       +  AA  LG+             
Sbjct: 103 VALGQI-----------GDERAVEPLIKALKDEDWFVRIAAAFALGEIGDER-------- 143

Query: 331 QRGAVRPLIEMLQSPDVQLREMSAFALGRLAQVITVSVLPAIL 373
              AV PLI+ L+  D  +R+ +A ALG +      + +  + 
Sbjct: 144 ---AVEPLIKALKDEDGWVRQSAADALGEIGGERVRAAMEKLA 183

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Length = 211

 Score = 47.7 bits (114), Expect = 2e-06
 Identities = 44/238 (18%), Positives = 80/238 (33%), Gaps = 72/238 (30%)

Query: 105 AVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVN 164
            V   +K+LQ               + V + +A+ALG +           D  A+  L+ 
Sbjct: 20  KVEMYIKNLQDD------------SYYVRRAAAYALGKIG----------DERAVEPLIK 57

Query: 165 LLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQ 224
            LK   D +       V R AADA+  +  E +           + PL++ L+  D  V+
Sbjct: 58  ALK---DED-----AWVRRAAADALGQIGDERA-----------VEPLIKALKDEDGWVR 98

Query: 225 RAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGN--------- 275
           ++AA AL  +  +            A+  LI  L+ ED  +   A   +G          
Sbjct: 99  QSAAVALGQIGDER-----------AVEPLIKALKDEDWFVRIAAAFALGEIGDERAVEP 147

Query: 276 ----LVHSSPNIKKEVLAA-------GALQPVIGLLSSCCSESQREAALLLGQFAATD 322
               L      +++    A            +  L  +    +++ A   L    + +
Sbjct: 148 LIKALKDEDGWVRQSAADALGEIGGERVRAAMEKLAETGTGFARKVAVNYLETHKSFN 205

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Length = 201

 Score = 58.1 bits (141), Expect = 3e-10
 Identities = 40/161 (24%), Positives = 64/161 (39%), Gaps = 33/161 (20%)

Query: 209 IPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYE 268
           +   ++ L+     V+RAAA AL  +  +            A+  LI  L+ ED+ +   
Sbjct: 16  VEMYIKNLQDDSYYVRRAAAYALGKIGDER-----------AVEPLIKALKDEDAWVRRA 64

Query: 269 AVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVH 328
           A   +G +               A++P+I  L       ++ AA+ LGQ           
Sbjct: 65  AADALGQIGDER-----------AVEPLIKALKDEDGWVRQSAAVALGQIGDER------ 107

Query: 329 IVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQVITVSVL 369
                AV PLI+ L+  D  +R  +AFALG +     V  L
Sbjct: 108 -----AVEPLIKALKDEDWFVRIAAAFALGEIGDERAVEPL 143

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Length = 201

 Score = 57.7 bits (140), Expect = 5e-10
 Identities = 40/172 (23%), Positives = 68/172 (39%), Gaps = 33/172 (19%)

Query: 202 RVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSE 261
           ++  E  + PL++ L+  D  V+RAAA AL  +  +            A+  LI  L+ E
Sbjct: 40  KIGDERAVEPLIKALKDEDAWVRRAAADALGQIGDER-----------AVEPLIKALKDE 88

Query: 262 DSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAAT 321
           D  +   A   +G +               A++P+I  L       +  AA  LG+    
Sbjct: 89  DGWVRQSAAVALGQI-----------GDERAVEPLIKALKDEDWFVRIAAAFALGEIGDE 137

Query: 322 DSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQVITVSVLPAIL 373
                       AV PLI+ L+  D  +R+ +A ALG +      + +  + 
Sbjct: 138 R-----------AVEPLIKALKDEDGWVRQSAADALGEIGGERVRAAMEKLA 178

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Length = 201

 Score = 50.0 bits (120), Expect = 2e-07
 Identities = 29/124 (23%), Positives = 47/124 (37%), Gaps = 22/124 (17%)

Query: 250 ALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQR 309
            +   I  L+ +   +   A   +G +               A++P+I  L    +  +R
Sbjct: 15  KVEMYIKNLQDDSYYVRRAAAYALGKIGD-----------ERAVEPLIKALKDEDAWVRR 63

Query: 310 EAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQVITVSVL 369
            AA  LGQ                AV PLI+ L+  D  +R+ +A ALG++     V  L
Sbjct: 64  AAADALGQIGDER-----------AVEPLIKALKDEDGWVRQSAAVALGQIGDERAVEPL 112

Query: 370 PAIL 373
              L
Sbjct: 113 IKAL 116

>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 Length = 131

 Score = 54.2 bits (131), Expect = 3e-09
 Identities = 28/150 (18%), Positives = 49/150 (32%), Gaps = 34/150 (22%)

Query: 209 IPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYE 268
           + P    +   +  V+R  + AL  +    DE         A   L+  L +ED  I   
Sbjct: 14  LVPRGSHMADENKWVRRDVSTALSRM---GDE---------AFEPLLESLSNEDWRIRGA 61

Query: 269 AVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVH 328
           A  +IGN                A++P+I LL       +  AA  L Q           
Sbjct: 62  AAWIIGNFQDER-----------AVEPLIKLLEDDSGFVRSGAARSLEQIGGER------ 104

Query: 329 IVQRGAVRPLIEMLQSPDVQLREMSAFALG 358
                    + ++ ++     R+++   L 
Sbjct: 105 -----VRAAMEKLAETGTGFARKVAVNYLE 129

>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 Length = 131

 Score = 50.0 bits (120), Expect = 7e-08
 Identities = 19/124 (15%), Positives = 43/124 (34%), Gaps = 23/124 (18%)

Query: 250 ALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQR 309
            L      +  E+  +  +    +  +               A +P++  LS+     + 
Sbjct: 13  GLVPRGSHMADENKWVRRDVSTALSRM------------GDEAFEPLLESLSNEDWRIRG 60

Query: 310 EAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQVITVSVL 369
            AA ++G F               AV PLI++L+     +R  +A +L ++      + +
Sbjct: 61  AAAWIIGNFQDER-----------AVEPLIKLLEDDSGFVRSGAARSLEQIGGERVRAAM 109

Query: 370 PAIL 373
             + 
Sbjct: 110 EKLA 113

>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae} Length = 778

 Score = 56.0 bits (134), Expect = 1e-08
 Identities = 34/240 (14%), Positives = 76/240 (31%), Gaps = 34/240 (14%)

Query: 74  EADRAAAKRATHVLAELA---KNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEH 130
           +            L  +        +        A+P L + L  P ++  D N    + 
Sbjct: 512 DIGEPIRILGCRALTRMLIFTNPGLIFKKYSALNAIPFLFELL--PRSTPVDDNPLHNDE 569

Query: 131 EVEKGSAF----ALGLLAVKPEHQ------QLIVDNGALSHLVNLLKRHMDSNCSRAVNS 180
           +++    +    AL  LA             ++      S + NL+            N 
Sbjct: 570 QIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLM---------LDENV 620

Query: 181 VIRRAA-DAITNLAHENSSIKTRV------RMEGGIPPLVELLEFTDTKVQRAAAGALRT 233
            ++R+  + I+N+     +I  +       +       LV+LL+ +D + QRA A     
Sbjct: 621 PLQRSTLELISNMMSHPLTIAAKFFNLENPQSLRNFNILVKLLQLSDVESQRAVAAIFAN 680

Query: 234 LAFKNDENKNQIVECNALPTLILML---RSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAA 290
           +A        +++    L    + +   + +D  +    + +   L    P+     +  
Sbjct: 681 IATTIPLIAKELLTKKELIENAIQVFADQIDDIELRQRLLMLFFGLFEVIPDNGTNEVYP 740

>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae} Length = 778

 Score = 47.1 bits (111), Expect = 7e-06
 Identities = 38/296 (12%), Positives = 86/296 (29%), Gaps = 44/296 (14%)

Query: 65  VLNTTFSWLEA---DRAAAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEA 121
           +       LE           +  VL +         W         L +  +    + +
Sbjct: 293 ITENYLQLLERSLNVEDVQIYSALVLVKT--------WSFTKLTCINLKQLSEIFINAIS 344

Query: 122 DRNLKPFEHEVEKGSAFALGLLAVKPE-HQQLIVDNGALSHLVNLLKRHMDSNCSRAVNS 180
            R +   E  VE     AL  L++K      +  +      L+ ++K    ++C   +  
Sbjct: 345 RRIVPKVEMSVE-----ALAYLSLKASVKIMIRSNESFTEILLTMIKSQKMTHCLYGLLV 399

Query: 181 VIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDE 240
           ++        NL        + +  E                    AA  +       ++
Sbjct: 400 IM-------ANL--------STLPEEXXXXXXXXXXXXXXXXXXXPAADKVGAEKAAKED 444

Query: 241 ----NKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPV 296
               N+  I+    +  L   + +       + V +I N+  S   I + +   GA++ +
Sbjct: 445 ILLFNEKYILRTELISFLKREMHNLSPNCKQQVVRIIYNITRSKNFIPQ-LAQQGAVKII 503

Query: 297 IGLLSSCCS---ESQREAALLLGQFAATDSDCKV---HIVQRGAVRPLIEMLQSPD 346
           +  L++        +      L +     ++  +         A+  L E+L    
Sbjct: 504 LEYLANKQDIGEPIRILGCRALTRMLIF-TNPGLIFKKYSALNAIPFLFELLPRST 558

>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Length = 253

 Score = 52.8 bits (126), Expect = 5e-08
 Identities = 24/164 (14%), Positives = 56/164 (34%), Gaps = 14/164 (8%)

Query: 209 IPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYE 268
           +  L+ELL+     V + A   +  +A   ++    +++        L+ +SE   +  E
Sbjct: 34  LKKLIELLDDDLWTVVKNAISIIMVIAKTREDLYEPMLK----KLFSLLKKSEAIPLTQE 89

Query: 269 AVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVH 328
                G +    P      L    +  +         +++   +  L + A  +      
Sbjct: 90  IAKAFGQMAKEKPE-----LVKSMIPVLFANYRIGDEKTKINVSYALEEIAKANPMLMAS 144

Query: 329 IVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQVITVSVLPAI 372
           I     VR  + ML S + + +  +   +  + +     V P +
Sbjct: 145 I-----VRDFMSMLSSKNREDKLTALNFIEAMGENSFKYVNPFL 183

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 52.9 bits (126), Expect = 1e-07
 Identities = 39/326 (11%), Positives = 89/326 (27%), Gaps = 94/326 (28%)

Query: 11  VPERKGQKRKL-------DEETV---IGDEQQ--------QMQQREISSSSAGTSSSDAR 52
             +      +L        EE V   + +  +         ++  +   S       + R
Sbjct: 57  SKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQR 116

Query: 53  QALLSEVS--AQVNV-----LNTTFSWLEADRAAAKRATH--------VLA-ELAKNEEV 96
             L ++    A+ NV            L   R A               +A ++  + +V
Sbjct: 117 DRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKV 176

Query: 97  -------VNWIVEG--GAVPALVKHLQA------PPTSEADRNLKPFEHEVEKGSAFALG 141
                  + W+      +   +++ LQ       P  +    +    +  +    A    
Sbjct: 177 QCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRR 236

Query: 142 LLAVKPEHQQ--LIVDNGALSHLV---NLLKRHMDSNCSRAVNSVIRRAADAITNLAHEN 196
           LL  KP ++   L++ N      V          + +C + +  +  R       L   +
Sbjct: 237 LLKSKP-YENCLLVLLN------VQNAKAWN-AFNLSC-KIL--LTTRFKQVTDFL---S 282

Query: 197 SSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLIL 256
           ++  T + ++     L                          DE K+ +++   L     
Sbjct: 283 AATTTHISLDHHSMTLTP------------------------DEVKSLLLKY--LDCRPQ 316

Query: 257 MLRSEDSAIHYEAVGVIGNLVHSSPN 282
            L  E    +   + +I   +     
Sbjct: 317 DLPREVLTTNPRRLSIIAESIRDGLA 342

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 45.2 bits (106), Expect = 3e-05
 Identities = 51/338 (15%), Positives = 93/338 (27%), Gaps = 102/338 (30%)

Query: 106 VPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNL 165
             A V +       +  +++   E E++        ++  K      +        L   
Sbjct: 26  EDAFVDNFDCKDVQDMPKSILSKE-EIDH-------IIMSKDAVSGTLR-------LFWT 70

Query: 166 LKRHMDSNCSRAVNSVIRRAADAI-TNLAHENSS--------IKTRVRMEGGIPPLVELL 216
           L    +    + V  V+R     + + +  E           I+ R R+           
Sbjct: 71  LLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQV----- 125

Query: 217 EFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDS-AIHYEAVGVIGN 275
            F    V R              +   ++ +       +L LR   +  I     GV+G 
Sbjct: 126 -FAKYNVSRL-------------QPYLKLRQA------LLELRPAKNVLID----GVLG- 160

Query: 276 LVHSSPNIKKEVLAAGALQ--PVIGL---------LSSCCSESQREAAL--LLGQF---- 318
                    K  +A        V            L +C S       L  LL Q     
Sbjct: 161 -------SGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNW 213

Query: 319 -AATDSDC--KVHIVQ-RGAVRPLIEMLQSP-------DVQ-LREMSAFALG-------R 359
            + +D     K+ I   +  +R L++            +VQ  +  +AF L        R
Sbjct: 214 TSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTR 273

Query: 360 LAQVITVSVLPAILIFIIINECQLEVLAFVLSEMVLLF 397
             QV    +  A    I ++      +     E+  L 
Sbjct: 274 FKQVTDF-LSAATTTHISLDH---HSMTLTPDEVKSLL 307

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588

 Score = 50.0 bits (119), Expect = 8e-07
 Identities = 30/262 (11%), Positives = 75/262 (28%), Gaps = 26/262 (9%)

Query: 125 LKPFEHEVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRR 184
           +K  E EV   ++  +              +N  +S ++  +K  +          V   
Sbjct: 290 MKDCEAEVRAAASHKVK--EFCENLSADCRENVIMSQILPCIKELVSDANQ----HVKSA 343

Query: 185 AADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLA--FKNDENK 242
            A  I  L+     +     +E  +P  +  L+    +V+      L  +       +  
Sbjct: 344 LASVIMGLS---PILGKDNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLS 400

Query: 243 NQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSS 302
             +     LP ++ +       +    +  +  L      +  E          +  L  
Sbjct: 401 QSL-----LPAIVELAEDAKWRVRLAIIEYMPLLAGQ---LGVEFFDEKLNSLCMAWLVD 452

Query: 303 CCSESQREAALLLGQFAAT--DSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRL 360
                +  A   L +             I+ +     ++ M   P+   R  + F +  L
Sbjct: 453 HVYAIREAATSNLKKLVEKFGKEWAHATIIPK-----VLAMSGDPNYLHRMTTLFCINVL 507

Query: 361 AQVITVSVLPAILIFIIINECQ 382
           ++V    +    ++  ++    
Sbjct: 508 SEVCGQDITTKHMLPTVLRMAG 529

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588

 Score = 40.4 bits (94), Expect = 8e-04
 Identities = 28/202 (13%), Positives = 64/202 (31%), Gaps = 18/202 (8%)

Query: 161 HLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTD 220
            L+  +    +    R    V     + +  LA +          E      +  L    
Sbjct: 402 SLLPAIVELAEDAKWR----VRLAIIEYMPLLAGQLGV---EFFDEKLNSLCMAWLVDHV 454

Query: 221 TKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSS 280
             ++ AA   L+ L    ++   +      +P ++ M    +       +  I  L    
Sbjct: 455 YAIREAATSNLKKLV---EKFGKEWAHATIIPKVLAMSGDPNYLHRMTTLFCINVLS--- 508

Query: 281 PNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIE 340
               +++     L  V+ +     +  +   A  L +      +  +    +  V+P++E
Sbjct: 509 EVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNSTL----QSEVKPILE 564

Query: 341 MLQS-PDVQLREMSAFALGRLA 361
            L    DV ++  +  AL  L+
Sbjct: 565 KLTQDQDVDVKYFAQEALTVLS 586

>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A Length = 651

 Score = 45.5 bits (107), Expect = 2e-05
 Identities = 37/233 (15%), Positives = 73/233 (31%), Gaps = 33/233 (14%)

Query: 129 EHEVEKGSAFALGLLAVK--PEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAA 186
             EV +     L     +     Q+++    A   L++++    +S+    V   +    
Sbjct: 178 SREVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDIITEEGNSDGGIVVEDCL---- 233

Query: 187 DAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDT----KVQR-----AAAGALRTLAFK 237
             + NL   N+S +   +    I  +    E  D       Q+          +R L   
Sbjct: 234 ILLQNLLKNNNSNQNFFKEGSYIQRMKPWFEVGDENSGWSAQKVTNLHLMLQLVRVLVSP 293

Query: 238 NDE------NKNQIVECNALPTLILMLRSE--DSAIHYEAVGVIGNLVHSSPNI-----K 284
           N+        +  + +C  L  L  +L +    + I  E +  +  ++            
Sbjct: 294 NNPPGATSSCQKAMFQCGLLQQLCTILMATGVPADILTETINTVSEVIRGCQVNQDYFAS 353

Query: 285 KEVLAAGALQPVIGLLSSCCSESQ----REAALLLGQ-FAATDSDCKVHIVQR 332
               +      ++ LL S  +E Q    R A L   Q F   +   +  IV  
Sbjct: 354 VNAPSNPPRPAIVVLLMSMVNERQPFVLRCAVLYCFQCFLYKNQKGQGEIVST 406

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	399
3tpo_A	529	Importin subunit alpha-2; nuclear import, protein	100.0
3ul1_B	510	Importin subunit alpha-2; arm repeat, armadillo re	100.0
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	100.0
3nmz_A	458	APC variant protein; protein-protein complex, arma	100.0
3nmz_A	458	APC variant protein; protein-protein complex, arma	100.0
3tpo_A	529	Importin subunit alpha-2; nuclear import, protein	100.0
4b8j_A	528	Importin subunit alpha-1A; transport protein, nucl	100.0
3ul1_B	510	Importin subunit alpha-2; arm repeat, armadillo re	100.0
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	100.0
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	100.0
4b8j_A	528	Importin subunit alpha-1A; transport protein, nucl	100.0
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	99.98
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	99.98
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	99.98
4hxt_A	252	De novo protein OR329; structural genomics, PSI-bi	99.97
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	99.97
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	99.97
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	99.97
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	99.97
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	99.97
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	99.97
4hxt_A	252	De novo protein OR329; structural genomics, PSI-bi	99.97
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	99.96
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	99.96
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	99.96
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	99.95
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	99.95
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	99.95
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	99.95
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	99.94
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	99.94
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	99.93
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	99.93
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	99.92
3tt9_A	233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	99.9
3opb_A	778	SWI5-dependent HO expression protein 4; heat and a	99.9
3tt9_A	233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	99.89
3opb_A	778	SWI5-dependent HO expression protein 4; heat and a	99.89
3grl_A	651	General vesicular transport factor P115; vesicle t	99.73
3grl_A	651	General vesicular transport factor P115; vesicle t	99.67
1oyz_A	280	Hypothetical protein YIBA; structural genomics, PS	99.62
4fdd_A	852	Transportin-1; heat repeats, karyopherin, nuclear	99.54
4fdd_A	852	Transportin-1; heat repeats, karyopherin, nuclear	99.54
1oyz_A	280	Hypothetical protein YIBA; structural genomics, PS	99.52
3ltm_A	211	Alpha-REP4; protein engineering, heat-like repeat,	99.5
1b3u_A	588	Protein (protein phosphatase PP2A); scaffold prote	99.48
3ltj_A	201	Alpharep-4; protein engineering, heat-like repeat,	99.47
1b3u_A	588	Protein (protein phosphatase PP2A); scaffold prote	99.45
3ltm_A	211	Alpha-REP4; protein engineering, heat-like repeat,	99.41
1ibr_B	462	P95, importin beta-1 subunit, nuclear factor; smal	99.41
2vgl_B	591	AP-2 complex subunit beta-1; cytoplasmic vesicle,	99.38
3ltj_A	201	Alpharep-4; protein engineering, heat-like repeat,	99.38
4gmo_A	684	Putative uncharacterized protein; ARM, heat, solen	99.27
1qgr_A	876	Protein (importin beta subunit); transport recepto	99.25
1w63_A	618	Adapter-related protein complex 1 gamma 1 subunit;	99.22
2vgl_B	591	AP-2 complex subunit beta-1; cytoplasmic vesicle,	99.22
1qgr_A	876	Protein (importin beta subunit); transport recepto	99.22
2bpt_A	861	Importin beta-1 subunit; nuclear transport, nucleo	99.2
2bpt_A	861	Importin beta-1 subunit; nuclear transport, nucleo	99.19
4gmo_A	684	Putative uncharacterized protein; ARM, heat, solen	99.18
1ibr_B	462	P95, importin beta-1 subunit, nuclear factor; smal	99.18
1w63_A	618	Adapter-related protein complex 1 gamma 1 subunit;	99.17
2db0_A	253	253AA long hypothetical protein; heat repeats, hel	99.08
1u6g_C	1230	TIP120 protein, CAND1; cullin repeat, heat repeat,	98.91
2qk2_A	242	LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2	98.87
2db0_A	253	253AA long hypothetical protein; heat repeats, hel	98.82
2vgl_A	621	Adaptor protein complex AP-2, alpha 2 subunit; cyt	98.8
1u6g_C	1230	TIP120 protein, CAND1; cullin repeat, heat repeat,	98.79
3b2a_A	265	TON_1937, putative uncharacterized protein; heat-r	98.79
2vgl_A	621	Adaptor protein complex AP-2, alpha 2 subunit; cyt	98.77
1te4_A	131	Conserved protein MTH187; methanobacterium thermoa	98.72
2qk1_A	249	Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h	98.72
4ady_A	963	RPN2, 26S proteasome regulatory subunit RPN2; prot	98.65
1ho8_A	480	Vacuolar ATP synthase subunit H; heat repeat, hydr	98.63
1ho8_A	480	Vacuolar ATP synthase subunit H; heat repeat, hydr	98.58
3b2a_A	265	TON_1937, putative uncharacterized protein; heat-r	98.55
2qk2_A	242	LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2	98.5
3dad_A	339	FH1/FH2 domain-containing protein 1; formin, FHOD1	98.44
4ady_A	963	RPN2, 26S proteasome regulatory subunit RPN2; prot	98.43
1te4_A	131	Conserved protein MTH187; methanobacterium thermoa	98.33
2qk1_A	249	Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h	98.32
3tjz_B	355	Coatomer subunit gamma; protein trafficking, golgi	98.31
3tjz_B	355	Coatomer subunit gamma; protein trafficking, golgi	98.17
3dad_A	339	FH1/FH2 domain-containing protein 1; formin, FHOD1	98.16
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	98.11
2fv2_A	268	RCD1 required for cell differentiation1 homolog; a	97.95
2fv2_A	268	RCD1 required for cell differentiation1 homolog; a	97.59
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	97.59
1lrv_A	244	LRV, leucine-rich repeat variant; leucine-rich rep	97.43
1wa5_C	960	Importin alpha RE-exporter; nuclear transport/comp	97.33
2of3_A	266	ZYG-9; multifunctional macromolecule, kinetochore,	97.32
1wa5_C	960	Importin alpha RE-exporter; nuclear transport/comp	97.26
4ffb_C	278	Protein STU2; tubulin fold, heat repeats, cytoskel	97.25
1upk_A	341	MO25 protein; transferase, armadillo; HET: MSE; 1.	97.23
2x19_B	963	Importin-13; nuclear transport, protein transport;	97.19
2x1g_F	971	Cadmus; transport protein, developmental protein,	97.08
1upk_A	341	MO25 protein; transferase, armadillo; HET: MSE; 1.	97.05
2x1g_F	971	Cadmus; transport protein, developmental protein,	96.94
2x19_B	963	Importin-13; nuclear transport, protein transport;	96.85
3ibv_A	980	Exportin-T; karyopherin, heat repeat, cytoplasm, n	96.71
3ebb_A	304	Phospholipase A2-activating protein; armadillo rep	96.53
4ffb_C	278	Protein STU2; tubulin fold, heat repeats, cytoskel	96.49
1lrv_A	244	LRV, leucine-rich repeat variant; leucine-rich rep	96.48
2of3_A	266	ZYG-9; multifunctional macromolecule, kinetochore,	96.42
4hat_C	1023	Exportin-1; heat repeat, nuclear export, RAN-ranbp	96.36
3ebb_A	304	Phospholipase A2-activating protein; armadillo rep	96.21
3oc3_A	800	Helicase MOT1, MOT1; regulation of transcription,	96.19
3ibv_A	980	Exportin-T; karyopherin, heat repeat, cytoplasm, n	96.17
3c2g_A	619	SYS-1 protein; beta-catenin, phylogeny, SYS-1, dev	96.09
3oc3_A	800	Helicase MOT1, MOT1; regulation of transcription,	96.03
3m1i_C	1049	Exportin-1; heat repeat, GTP-binding, nucleotide-b	96.02
3gjx_A	1073	Exportin-1; transport, cytoplasm, nucleus, RNA-bin	95.9
4hat_C	1023	Exportin-1; heat repeat, nuclear export, RAN-ranbp	95.83
3c2g_A	619	SYS-1 protein; beta-catenin, phylogeny, SYS-1, dev	95.64
3m1i_C	1049	Exportin-1; heat repeat, GTP-binding, nucleotide-b	95.37
3l9t_A	240	Putative uncharacterized protein SMU.31; hypotheti	95.0
3l9t_A	240	Putative uncharacterized protein SMU.31; hypotheti	94.92
2f31_A	233	Diaphanous protein homolog 1; formin,MDIA1, protei	94.7
3eg5_B	383	Protein diaphanous homolog 1; protein-protein comp	94.68
1lsh_A	1056	Lipovitellin (LV-1N, LV-1C); vitellogenin, lipopro	94.33
3u0r_A	507	Apoptosis inhibitor 5; heat repeat, armadillo repe	94.23
2f31_A	233	Diaphanous protein homolog 1; formin,MDIA1, protei	93.96
3u0r_A	507	Apoptosis inhibitor 5; heat repeat, armadillo repe	93.26
3eg5_B	383	Protein diaphanous homolog 1; protein-protein comp	92.81
2bnx_A	386	Diaphanous protein homolog 1; autoinhibition, acti	92.06
3gjx_A	1073	Exportin-1; transport, cytoplasm, nucleus, RNA-bin	91.93
2bnx_A	386	Diaphanous protein homolog 1; autoinhibition, acti	91.86
1lsh_A	1056	Lipovitellin (LV-1N, LV-1C); vitellogenin, lipopro	91.49
3qml_C	315	Protein SLS1, nucleotide exchange factor SIL1; arm	89.66
3qml_C	315	Protein SLS1, nucleotide exchange factor SIL1; arm	89.24
3a6p_A	1204	Exportin-5; exportin-5, RANGTP, nuclearexport, imp	86.13
3a6p_A	1204	Exportin-5; exportin-5, RANGTP, nuclearexport, imp	86.1
3o2t_A	386	Symplekin; heat repeat, scaffold, protein binding;	83.18
3o2t_A	386	Symplekin; heat repeat, scaffold, protein binding;	80.6

>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B

Probab=100.00  E-value=1.2e-35  Score=288.80  Aligned_cols=317  Identities=22%  Similarity=0.331  Sum_probs=272.1

Q ss_pred             hhhHHHHhhhhhcchhhhHHHHHHHHHHHHHHcCC-hhHHHHHHhCCChHHHHhcccCCCCcccccCCCcchHHHHHHHH
Q 015851           59 VSAQVNVLNTTFSWLEADRAAAKRATHVLAELAKN-EEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSA  137 (399)
Q Consensus        59 ~~~~~~~L~~~l~~~~~~~~~~~~a~~~L~~l~~~-~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~~~~~a~  137 (399)
                      ..+.+|.|..++.. ++++.+|..|+|+|.+++.+ ++.+..+++.|++|.|+.+|.+++.            +++++|+
T Consensus       117 ~~G~ip~Lv~lL~~-~~~~~~q~~Aa~aL~nia~~~~~~~~~vv~~Gaip~Lv~LL~s~~~------------~v~e~A~  183 (529)
T 3tpo_A          117 RAGLIPKFVSFLGK-TDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHA------------HISEQAV  183 (529)
T ss_dssp             HTTHHHHHHHHHTC-TTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCH------------HHHHHHH
T ss_pred             HCCCHHHHHHHHcC-CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCH------------HHHHHHH
Confidence            34567777777742 35678999999999999985 7888899999999999999998876            8999999


Q ss_pred             HHHHHhc-CChhhHHHHHhcCcHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhh
Q 015851          138 FALGLLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELL  216 (399)
Q Consensus       138 ~~L~~l~-~~~~~~~~i~~~~~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll  216 (399)
                      |+|+||+ ++++++..+.+.|+++.|+.+|.........   ..+++.++|+|.+++.............+++|.|+.++
T Consensus       184 ~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~---~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL  260 (529)
T 3tpo_A          184 WALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLA---CGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLL  260 (529)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTCHHHHHHTTCSSCGGGSC---HHHHHHHHHHHHHHHCCCTTCCCHHHHHHHHHHHHHHT
T ss_pred             HHHHHHhccCHHHHHHHHHcCCcHHHHHHHhccchhHhH---HHHHHHHHHHHHHHHhcccchhhHHHHhhHHHHHHHHh
Confidence            9999999 7899999999999999999999876433211   16788999999999976555444455568899999999


Q ss_pred             cCCCHHHHHHHHHHHHHhhcCChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHHCCCcHHH
Q 015851          217 EFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPV  296 (399)
Q Consensus       217 ~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L  296 (399)
                      .+++++++..++++|.+++.+.++....+...|+++.|+.+|.+++..++..++++|+|++.+++..+..+++.|+++.|
T Consensus       261 ~~~~~~v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~i~~~g~l~~L  340 (529)
T 3tpo_A          261 HHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVF  340 (529)
T ss_dssp             TSSCHHHHHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGH
T ss_pred             cCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhccchHHHHHHhcCCChhHHHHHHHHHHHHHccchHHHHHHhhcccHHHH
Confidence            99999999999999999999777778888899999999999999999999999999999998888888999999999999


Q ss_pred             HHhhcCCChHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhccCCC---------C
Q 015851          297 IGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQVITV---------S  367 (399)
Q Consensus       297 ~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~---------~  367 (399)
                      +.+|.++++.++.+|+|+|+|++.+++.....+.+.|++|.|+.++.+++.++++.|+++|+|++.....         +
T Consensus       341 ~~LL~~~~~~i~~~a~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nl~~~~~~~~~~~l~~~g  420 (529)
T 3tpo_A          341 PSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKAAAWAITNYTSGGTVEQIVYLVHCG  420 (529)
T ss_dssp             HHHTTCSSHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTT
T ss_pred             HHHHcCCCHHHHHHHHHHHHHHhcccHHHHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCc
Confidence            9999999999999999999999998889999999999999999999999999999999999999986543         4


Q ss_pred             cchhHHHHHhhccccHHHHHHHHhhh
Q 015851          368 VLPAILIFIIINECQLEVLAFVLSEM  393 (399)
Q Consensus       368 ~~~~~~~~~~~~~~~~~~~~~~l~~~  393 (399)
                      .++.++.++.  ....+++..++..+
T Consensus       421 ~i~~L~~LL~--~~d~~i~~~~L~aL  444 (529)
T 3tpo_A          421 IIEPLMNLLS--AKDTKIIQVILDAI  444 (529)
T ss_dssp             CHHHHHHGGG--CSCHHHHHHHHHHH
T ss_pred             CHHHHHHHhc--CCCHHHHHHHHHHH
Confidence            6676665554  33444444444433

>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...

Probab=100.00  E-value=3e-35  Score=284.54  Aligned_cols=316  Identities=22%  Similarity=0.333  Sum_probs=270.4

Q ss_pred             hhHHHHhhhhhcchhhhHHHHHHHHHHHHHHcCC-hhHHHHHHhCCChHHHHhcccCCCCcccccCCCcchHHHHHHHHH
Q 015851           60 SAQVNVLNTTFSWLEADRAAAKRATHVLAELAKN-EEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAF  138 (399)
Q Consensus        60 ~~~~~~L~~~l~~~~~~~~~~~~a~~~L~~l~~~-~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~~~~~a~~  138 (399)
                      .+.+|.|.+++.. ++++.+|.+|+|+|.|++.+ ++++..+++.|++|.|+.+|.+++.            +++++|+|
T Consensus        99 ~G~ip~LV~lL~~-~~~~~lq~~Aa~aL~nias~~~e~~~~vv~~GaIp~Lv~lL~s~~~------------~v~e~A~~  165 (510)
T 3ul1_B           99 AGLIPKFVSFLGK-TDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHA------------HISEQAVW  165 (510)
T ss_dssp             TTHHHHHHHHTTC-TTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCH------------HHHHHHHH
T ss_pred             CCCHHHHHHHHCC-CCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHcCCCH------------HHHHHHHH
Confidence            4567888887742 34578999999999999885 8899999999999999999998766            89999999


Q ss_pred             HHHHhc-CChhhHHHHHhcCcHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhhc
Q 015851          139 ALGLLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLE  217 (399)
Q Consensus       139 ~L~~l~-~~~~~~~~i~~~~~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~  217 (399)
                      +|+|++ ++++++..+.+.|+++.|+.++...+.....   ..+++.++|+|.+++.............+++|.|+.++.
T Consensus       166 aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~---~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~  242 (510)
T 3ul1_B          166 ALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLA---CGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLH  242 (510)
T ss_dssp             HHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSC---HHHHHHHHHHHHHHHCCCSSCCCHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHhCCHHHHHHHHHcCChHHHHHHHHhccchhhh---HHHHHHHHHHHHHHhhcccchhHHHHHHhHHHHHHHHHh
Confidence            999999 7799999999999999999999876432211   167889999999999765544444555688999999999


Q ss_pred             CCCHHHHHHHHHHHHHhhcCChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHHCCCcHHHH
Q 015851          218 FTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVI  297 (399)
Q Consensus       218 ~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~  297 (399)
                      +++++++..++++|++|+.+.++....+.+.|+++.|+.+|.+++..++..++++|+|++.+++..+..+++.|+++.|+
T Consensus       243 ~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~al~aL~nl~~~~~~~~~~i~~~g~l~~L~  322 (510)
T 3ul1_B          243 HNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFP  322 (510)
T ss_dssp             CSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGCC
T ss_pred             cCCHHHHHHHHHHHHHHhhchhhhHHHHHhcccchhhhhhhcCCChhhhhHHHHHHHHhhcCCHHHHHHHhhccchHHHH
Confidence            99999999999999999997777778888999999999999999999999999999999988888889999999999999


Q ss_pred             HhhcCCChHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhccCCC---------Cc
Q 015851          298 GLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQVITV---------SV  368 (399)
Q Consensus       298 ~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~---------~~  368 (399)
                      .+|.+++..++.+|+|+|+|++.++++.+..+.+.|+++.|+.++.+++.++++.|+++|.|++.....         +.
T Consensus       323 ~LL~~~~~~v~~~A~~aL~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~Aa~aL~Nl~~~~~~~~~~~L~~~g~  402 (510)
T 3ul1_B          323 SLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGI  402 (510)
T ss_dssp             -CTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHTTC
T ss_pred             HHhcCCCHHHHHHHHHHHHHHHcCcHHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHCCC
Confidence            999999999999999999999988889999999999999999999999999999999999999986553         35


Q ss_pred             chhHHHHHhhccccHHHHHHHHhhh
Q 015851          369 LPAILIFIIINECQLEVLAFVLSEM  393 (399)
Q Consensus       369 ~~~~~~~~~~~~~~~~~~~~~l~~~  393 (399)
                      ++.++.++  .....+++..++..+
T Consensus       403 i~~L~~LL--~~~d~~i~~~~L~aL  425 (510)
T 3ul1_B          403 IEPLMNLL--SAKDTKIIQVILDAI  425 (510)
T ss_dssp             HHHHHHGG--GCSCHHHHHHHHHHH
T ss_pred             HHHHHHHh--cCCCHHHHHHHHHHH
Confidence            66665544  334444444444433

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A

Probab=100.00  E-value=5.3e-35  Score=267.03  Aligned_cols=281  Identities=21%  Similarity=0.202  Sum_probs=242.8

Q ss_pred             HHHHHHHHHHHHHcCChhHHHHHHhCCChHHHHhcccCCCCcccccCCCcchHHHHHHHHHHHHHhc-CChhhHHHHHhc
Q 015851           78 AAAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA-VKPEHQQLIVDN  156 (399)
Q Consensus        78 ~~~~~a~~~L~~l~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~~~~~a~~~L~~l~-~~~~~~~~i~~~  156 (399)
                      ..+..|+|+|.+++.++++|+.+++.|++++|+.+|..+... .........++++++|+|+|.||+ .+++++..+...
T Consensus        47 ~~~~~A~~aL~nls~d~e~R~~i~~~G~l~~Lv~LL~~~~~~-~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~i~~~  125 (354)
T 3nmw_A           47 HQICPAVCVLMKLSFDEEHRHAMNELGGLQAIAELLQVDCEM-YGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSM  125 (354)
T ss_dssp             GTHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHHHHHHHH-HTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHhccccc-ccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHc
Confidence            345589999999999999999999999999999999632100 000001124589999999999999 556688877654


Q ss_pred             -CcHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhhc-CchhHHHHHhcCChHHHHHhh-cCCCHHHHHHHHHHHHH
Q 015851          157 -GALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHE-NSSIKTRVRMEGGIPPLVELL-EFTDTKVQRAAAGALRT  233 (399)
Q Consensus       157 -~~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~-~~~~~~~~~~~~~i~~L~~ll-~~~~~~v~~~a~~~L~~  233 (399)
                       |+++.|+.+|.+.+.        ++++.++++|.||+.. ++..+..+.+.|++|.|+++| ++.++.+++.|+++|+|
T Consensus       126 ~GaIp~LV~LL~s~~~--------~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~n  197 (354)
T 3nmw_A          126 KGCMRALVAQLKSESE--------DLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWN  197 (354)
T ss_dssp             HHHHHHHHHGGGCSCH--------HHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_pred             CCcHHHHHHHHCCCCH--------HHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence             569999999997665        8999999999999974 567788888999999999974 66789999999999999


Q ss_pred             hhcCChhhHHHHH-hcCCHHHHHHhhcCCCH----HHHHHHHHHHHHhhc---CChhHHHHHHHCCCcHHHHHhhcCCCh
Q 015851          234 LAFKNDENKNQIV-ECNALPTLILMLRSEDS----AIHYEAVGVIGNLVH---SSPNIKKEVLAAGALQPVIGLLSSCCS  305 (399)
Q Consensus       234 L~~~~~~~~~~~~-~~~~~~~L~~ll~~~~~----~v~~~a~~~L~~l~~---~~~~~~~~~~~~~~l~~L~~lL~~~~~  305 (399)
                      |+.+.++++..+. ..|++|.|+.+|.++++    +++..|+++|.|++.   .+++.+..+.+.|+++.|+.+|.+++.
T Consensus       198 Ls~~~~~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~~~~  277 (354)
T 3nmw_A          198 LSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSL  277 (354)
T ss_dssp             HHTTCHHHHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTCSCH
T ss_pred             HHccChhhhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcCCCh
Confidence            9986778888887 78999999999987654    599999999999996   568888999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhccCCCC
Q 015851          306 ESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQVITVS  367 (399)
Q Consensus       306 ~v~~~a~~~L~~l~~~~~~~~~~l~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~  367 (399)
                      .++++|+++|+|++..+++++..+.+.|++|.|++++.++++.+++.|+++|.||+.+.+.+
T Consensus       278 ~v~~~A~~aL~nLa~~~~~~~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~~~~~~~  339 (354)
T 3nmw_A          278 TIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRPAK  339 (354)
T ss_dssp             HHHHHHHHHHHHHTSSCHHHHHHHHHTTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCCGG
T ss_pred             HHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCHHH
Confidence            99999999999999778899999999999999999999999999999999999999998865

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}

Probab=100.00  E-value=1.7e-34  Score=271.33  Aligned_cols=278  Identities=22%  Similarity=0.212  Sum_probs=239.7

Q ss_pred             HHHHHHHHHcCChhHHHHHHhCCChHHHHhcccCCCCcccccCCCcchHHHHHHHHHHHHHhc-CChhhHHHHHh-cCcH
Q 015851           82 RATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA-VKPEHQQLIVD-NGAL  159 (399)
Q Consensus        82 ~a~~~L~~l~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~~~~~a~~~L~~l~-~~~~~~~~i~~-~~~i  159 (399)
                      .|+|+|.|++.++++|+.+.+.|++++|+.+|..+.... ........+.++++|+|+|.||+ .++.++..+.. .|++
T Consensus       167 qAv~aL~nls~~~e~R~~i~~~G~l~~Lv~LL~~~~~~~-~~~~~~~~~~l~~~Aa~aL~nLa~~~~~~k~~i~~~~GaI  245 (458)
T 3nmz_A          167 PAVCVLMKLSFDEEHRHAMNELGGLQAIAELLQVDCEMY-GLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCM  245 (458)
T ss_dssp             HHHHHHHHHTTSHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHCHHHH
T ss_pred             HHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHhhhhccc-ccccCCCCHHHHHHHHHHHHHHhCCCcccHHHHHHcCCcH
Confidence            899999999999999999999999999999995311000 00001113578999999999999 55567777765 4569


Q ss_pred             HHHHHHHhccccCccccccHHHHHHHHHHHHHHhhc-CchhHHHHHhcCChHHHHHhh-cCCCHHHHHHHHHHHHHhhcC
Q 015851          160 SHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHE-NSSIKTRVRMEGGIPPLVELL-EFTDTKVQRAAAGALRTLAFK  237 (399)
Q Consensus       160 ~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~-~~~~~~~~~~~~~i~~L~~ll-~~~~~~v~~~a~~~L~~L~~~  237 (399)
                      +.|+.+|.+.+.        ++++.++|+|.||+.. ++..+..+.+.|+++.|+.+| .+.++.+++.++.+|+||+.+
T Consensus       246 p~LV~LL~s~~~--------~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s~~~~v~~~A~~aL~nLs~~  317 (458)
T 3nmz_A          246 RALVAQLKSESE--------DLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAH  317 (458)
T ss_dssp             HHHHHGGGCSCH--------HHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhCCCH--------HHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhcCCCHHHHHHHHHHHHHHccC
Confidence            999999997665        8999999999999974 567888889999999999974 567899999999999999986


Q ss_pred             ChhhHHHHH-hcCCHHHHHHhhcCCCH----HHHHHHHHHHHHhhc---CChhHHHHHHHCCCcHHHHHhhcCCChHHHH
Q 015851          238 NDENKNQIV-ECNALPTLILMLRSEDS----AIHYEAVGVIGNLVH---SSPNIKKEVLAAGALQPVIGLLSSCCSESQR  309 (399)
Q Consensus       238 ~~~~~~~~~-~~~~~~~L~~ll~~~~~----~v~~~a~~~L~~l~~---~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~  309 (399)
                      .++++..+. ..|++|.|+.+|.++++    +++..|+++|+||+.   .+++.+..+.+.|+++.|+.+|.+++..+++
T Consensus       318 ~~~nk~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv~LL~~~~~~v~~  397 (458)
T 3nmz_A          318 CTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVS  397 (458)
T ss_dssp             CHHHHHHHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHSSCSCHHHHH
T ss_pred             CHHHHHHHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHHHHHHHHcCCChHHHH
Confidence            678888887 78999999999987654    599999999999996   5788899999999999999999999999999


Q ss_pred             HHHHHHHHhhccChhhHHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhccCCCCc
Q 015851          310 EAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQVITVSV  368 (399)
Q Consensus       310 ~a~~~L~~l~~~~~~~~~~l~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~  368 (399)
                      +|+++|+|++..+++++..+.+.|+++.|++++.++++.+++.|+++|.||+.+.+.++
T Consensus       398 ~A~~aL~nLa~~~~~~~~~i~~~G~I~~Lv~LL~s~~~~v~~~Aa~AL~nL~~~~p~ky  456 (458)
T 3nmz_A          398 NACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRPAKY  456 (458)
T ss_dssp             HHHHHHHHHHSSCHHHHHHHHHHTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTCCSCC-
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCHhhh
Confidence            99999999997788999999999999999999999999999999999999999887653

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}

Probab=100.00  E-value=2.8e-33  Score=262.99  Aligned_cols=339  Identities=17%  Similarity=0.178  Sum_probs=260.3

Q ss_pred             HhhhhhhHHHHhhhhhcchh----------hhHHHHHHHHHHHHHHcCC-hhHHHHHHhCCCh----------HHHHhcc
Q 015851           55 LLSEVSAQVNVLNTTFSWLE----------ADRAAAKRATHVLAELAKN-EEVVNWIVEGGAV----------PALVKHL  113 (399)
Q Consensus        55 ~~~~~~~~~~~L~~~l~~~~----------~~~~~~~~a~~~L~~l~~~-~~~~~~~~~~g~l----------~~L~~lL  113 (399)
                      ......+.+|.|.+++...+          .+++.|.+|+|+|.|++.+ |+......+.|++          +.+++++
T Consensus        64 ~~~~~~g~~p~lv~~l~~~~~~~~~~~~~~~~~~~~~~a~~al~ni~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  143 (458)
T 3nmz_A           64 ISMRQSGCLPLLIQLLHGNDKDSVLLGNSRGSKEARARASAALHNIIHSQPDDKRGRREIRVLHLLEQIRAYCETCWEWQ  143 (458)
T ss_dssp             HHHHHHTCHHHHHHHHTCTTCCSCC---CCCCHHHHHHHHHHHHHHHHHSCSCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHCCCHHHHHHHHhcccccccccccccCCHHHHHHHHHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhhHHHHHHH
Confidence            34556777777777776322          3478999999999999994 7777777777877          6777777


Q ss_pred             cCCC--CcccccC-CCcchHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHHHhccccC---ccccccHHHHHHHHH
Q 015851          114 QAPP--TSEADRN-LKPFEHEVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDS---NCSRAVNSVIRRAAD  187 (399)
Q Consensus       114 ~~~~--~~~~~~~-~~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~~~i~~L~~~L~~~~~~---~~~~~~~~~~~~a~~  187 (399)
                      .+..  .+...++ +.+.+ ..+.+|+|+|+|++.++++|..+.+.|++++|+.+|....+.   ........+++.++|
T Consensus       144 ~~~~~~~~~~~~~~~~~~~-~~~~qAv~aL~nls~~~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~  222 (458)
T 3nmz_A          144 EAHEPGMDQDKNPMPAPVE-HQICPAVCVLMKLSFDEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGM  222 (458)
T ss_dssp             TTTSSSSCCCSCC--CCCT-TTTHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHH
T ss_pred             HhhccccccccCCccchhh-HHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHH
Confidence            7653  1100000 00011 234599999999998899999999999999999999642100   000001178999999


Q ss_pred             HHHHHhhcCchhHHHHHhc-CChHHHHHhhcCCCHHHHHHHHHHHHHhhcC-ChhhHHHHHhcCCHHHHHHhh-cCCCHH
Q 015851          188 AITNLAHENSSIKTRVRME-GGIPPLVELLEFTDTKVQRAAAGALRTLAFK-NDENKNQIVECNALPTLILML-RSEDSA  264 (399)
Q Consensus       188 ~L~~l~~~~~~~~~~~~~~-~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~-~~~~~~~~~~~~~~~~L~~ll-~~~~~~  264 (399)
                      +|.||+..++..+..+... |++|.|+.+|.+++++++..|+++|+||+.+ +++++..+.+.|++|.|+.+| .++++.
T Consensus       223 aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s~~~~  302 (458)
T 3nmz_A          223 ALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKES  302 (458)
T ss_dssp             HHHHHHTTCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTTCCSHH
T ss_pred             HHHHHhCCCcccHHHHHHcCCcHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhcCCCHH
Confidence            9999998777677666544 5699999999999999999999999999984 567889999999999999975 567889


Q ss_pred             HHHHHHHHHHHhhcCChhHHHHHH-HCCCcHHHHHhhcCCCh----HHHHHHHHHHHHhhc---cChhhHHHHHhcCCHH
Q 015851          265 IHYEAVGVIGNLVHSSPNIKKEVL-AAGALQPVIGLLSSCCS----ESQREAALLLGQFAA---TDSDCKVHIVQRGAVR  336 (399)
Q Consensus       265 v~~~a~~~L~~l~~~~~~~~~~~~-~~~~l~~L~~lL~~~~~----~v~~~a~~~L~~l~~---~~~~~~~~l~~~g~v~  336 (399)
                      ++..|+++|+||+...++.+..+. ..|+++.|+.+|.+++.    .++++|+++|.|++.   .+++++..+.+.|+++
T Consensus       303 v~~~A~~aL~nLs~~~~~nk~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~  382 (458)
T 3nmz_A          303 TLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQ  382 (458)
T ss_dssp             HHHHHHHHHHHHHHHCHHHHHHHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHH
T ss_pred             HHHHHHHHHHHHccCCHHHHHHHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHH
Confidence            999999999999975566667776 78999999999987654    599999999999996   5788999999999999


Q ss_pred             HHHHhhCCCCHHHHHHHHHHHHHhhccCCC--------CcchhHHHHHhhccccH-HHHHHHHhhhH
Q 015851          337 PLIEMLQSPDVQLREMSAFALGRLAQVITV--------SVLPAILIFIIINECQL-EVLAFVLSEMV  394 (399)
Q Consensus       337 ~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~--------~~~~~~~~~~~~~~~~~-~~~~~~l~~~~  394 (399)
                      .|+.+|.+++..+++.|+++|+|++..++.        +.+|.++.++...+..+ +....+|..+.
T Consensus       383 ~Lv~LL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~I~~Lv~LL~s~~~~v~~~Aa~AL~nL~  449 (458)
T 3nmz_A          383 TLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLM  449 (458)
T ss_dssp             HHHHHSSCSCHHHHHHHHHHHHHHHSSCHHHHHHHHHHTHHHHHHTTTTCSSHHHHHHHHHHHHHHH
T ss_pred             HHHHHHcCCChHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence            999999999999999999999999965442        35566555443333322 44555555544

>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B

Probab=100.00  E-value=3.9e-32  Score=264.18  Aligned_cols=289  Identities=20%  Similarity=0.289  Sum_probs=254.6

Q ss_pred             hhHHHHhhhhhcchhhhHHHHHHHHHHHHHHcCC-hhHHHHHHhCCChHHHHhcccCCCCcccccCCCcchHHHHHHHHH
Q 015851           60 SAQVNVLNTTFSWLEADRAAAKRATHVLAELAKN-EEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAF  138 (399)
Q Consensus        60 ~~~~~~L~~~l~~~~~~~~~~~~a~~~L~~l~~~-~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~~~~~a~~  138 (399)
                      .+.+|.|..++  .+.+..++..|+|+|++++.+ ++++..+.+.|++++|+.+|...+...       ....+++.++|
T Consensus       161 ~Gaip~Lv~LL--~s~~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~-------~~~~~~~~a~~  231 (529)
T 3tpo_A          161 GGAIPAFISLL--ASPHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLST-------LACGYLRNLTW  231 (529)
T ss_dssp             TTHHHHHHHHT--TCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTCSSCGGG-------SCHHHHHHHHH
T ss_pred             CCCHHHHHHHH--cCCCHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHHHHhccchhH-------hHHHHHHHHHH
Confidence            34677787777  456778999999999999996 899999999999999999998765421       12367889999


Q ss_pred             HHHHhcCCh-hhHHHHHhcCcHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhhc
Q 015851          139 ALGLLAVKP-EHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLE  217 (399)
Q Consensus       139 ~L~~l~~~~-~~~~~i~~~~~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~  217 (399)
                      +|.+++.+. .........++++.|+.++.+.+.        +++..++|+|.+++...+.....+...|+++.|+.+|.
T Consensus       232 ~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~--------~v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~  303 (529)
T 3tpo_A          232 TLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDP--------EVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLG  303 (529)
T ss_dssp             HHHHHHCCCTTCCCHHHHHHHHHHHHHHTTSSCH--------HHHHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHHHT
T ss_pred             HHHHHHhcccchhhHHHHhhHHHHHHHHhcCCcH--------HHHHHHHHHHHHhhhhhhhhHHHHHhccchHHHHHHhc
Confidence            999999443 333334446789999999987766        89999999999999877777777888999999999999


Q ss_pred             CCCHHHHHHHHHHHHHhhcCChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHHCCCcHHHH
Q 015851          218 FTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVI  297 (399)
Q Consensus       218 ~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~  297 (399)
                      ++++.++..++++|+|++.+++.....+++.|+++.|+.+|.++++.++..|+|+|+||+.+++.....+++.|+++.|+
T Consensus       304 ~~~~~v~~~a~~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~i~~~a~~aL~nl~~~~~~~~~~v~~~g~i~~Lv  383 (529)
T 3tpo_A          304 ATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLV  383 (529)
T ss_dssp             CSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHH
T ss_pred             CCChhHHHHHHHHHHHHHccchHHHHHHhhcccHHHHHHHHcCCCHHHHHHHHHHHHHHhcccHHHHHHHHhcCcHHHHH
Confidence            99999999999999999998888899999999999999999999999999999999999998888889999999999999


Q ss_pred             HhhcCCChHHHHHHHHHHHHhhcc-ChhhHHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhccCC
Q 015851          298 GLLSSCCSESQREAALLLGQFAAT-DSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQVIT  365 (399)
Q Consensus       298 ~lL~~~~~~v~~~a~~~L~~l~~~-~~~~~~~l~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~  365 (399)
                      .++.+++..++.+|+|+|+|++.+ +++....+.+.|+++.|+++|.+++++++..++++|.|+....+
T Consensus       384 ~lL~~~~~~v~~~A~~aL~nl~~~~~~~~~~~l~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~~~  452 (529)
T 3tpo_A          384 GVLSKADFKTQKAAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAE  452 (529)
T ss_dssp             HHHHSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHhcCCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCcCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhH
Confidence            999999999999999999999865 45778889999999999999999999999999999999986443

>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A

Probab=100.00  E-value=8.1e-32  Score=262.42  Aligned_cols=308  Identities=21%  Similarity=0.332  Sum_probs=263.6

Q ss_pred             hHHHHhhhhhcchhhhHHHHHHHHHHHHHHcCC-hhHHHHHHhCCChHHHHhcccCCCCcccccCCCcchHHHHHHHHHH
Q 015851           61 AQVNVLNTTFSWLEADRAAAKRATHVLAELAKN-EEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFA  139 (399)
Q Consensus        61 ~~~~~L~~~l~~~~~~~~~~~~a~~~L~~l~~~-~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~~~~~a~~~  139 (399)
                      +.++.|..++... +++.+|..|+|+|.+++.+ ++++..+++.|+++.|+.+|.+++.            +++..|+++
T Consensus       117 g~v~~Lv~lL~~~-~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~------------~v~~~a~~a  183 (528)
T 4b8j_A          117 GVVPRFVQFLTRE-DFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLGSSSD------------DVREQAVWA  183 (528)
T ss_dssp             TCHHHHHHHHTCT-TCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCH------------HHHHHHHHH
T ss_pred             CCHHHHHHHhCCC-CCHHHHHHHHHHHHHHhCCCHHHHHHHHhCCcHHHHHHHhcCCCH------------HHHHHHHHH
Confidence            4677777777422 2378999999999999996 8999999999999999999998655            899999999


Q ss_pred             HHHhc-CChhhHHHHHhcCcHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhhcC
Q 015851          140 LGLLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEF  218 (399)
Q Consensus       140 L~~l~-~~~~~~~~i~~~~~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~  218 (399)
                      |++++ .++.++..+...|+++.|+.++....+.       .++..++|+|.+|+...+.... ....++++.|+.++.+
T Consensus       184 L~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~~~~-------~v~~~a~~~L~~L~~~~~~~~~-~~~~~~l~~L~~lL~~  255 (528)
T 4b8j_A          184 LGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKL-------SMLRNATWTLSNFCRGKPQPSF-EQTRPALPALARLIHS  255 (528)
T ss_dssp             HHHHHHTCHHHHHHHHHTTCHHHHHHTCCTTCCH-------HHHHHHHHHHHHHHCSSSCCCH-HHHTTHHHHHHHHTTC
T ss_pred             HHHHhCCChhhHHHHHHCCcHHHHHHHHhcCCCH-------HHHHHHHHHHHHHHcCCCCCcH-HHHHHHHHHHHHHHCC
Confidence            99999 7788999999999999999999544332       8999999999999976543333 4458999999999999


Q ss_pred             CCHHHHHHHHHHHHHhhcCChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHHCCCcHHHHH
Q 015851          219 TDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIG  298 (399)
Q Consensus       219 ~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~  298 (399)
                      +++.++..++++|++++.+.+.....+.+.|+++.|+.+|.++++.++..|+++|+|++.+++.....+++.|+++.|+.
T Consensus       256 ~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~  335 (528)
T 4b8j_A          256 NDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIVTGDDAQTQCIIDHQALPCLLS  335 (528)
T ss_dssp             CCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHcCCChhHHHHHHHHHHHHHcCCHHHHHHHHHhhhHHHHHH
Confidence            99999999999999999876777778889999999999999999999999999999999888888888999999999999


Q ss_pred             hhcCC-ChHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhccCC---------CCc
Q 015851          299 LLSSC-CSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQVIT---------VSV  368 (399)
Q Consensus       299 lL~~~-~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~---------~~~  368 (399)
                      +|.++ ++.++.+|+|+|+|++.+++.....+.+.|+++.|+.++.++++.++..|+++|.+++....         .+.
T Consensus       336 lL~~~~~~~v~~~A~~~L~nl~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~  415 (528)
T 4b8j_A          336 LLTQNLKKSIKKEACWTISNITAGNKDQIQAVINAGIIGPLVNLLQTAEFDIKKEAAWAISNATSGGSHDQIKYLVSEGC  415 (528)
T ss_dssp             HHHSCCCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTC
T ss_pred             HHcCCCcHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCC
Confidence            99988 89999999999999998777888899999999999999998999999999999999998843         235


Q ss_pred             chhHHHHHhhccccHHHHHHHHh
Q 015851          369 LPAILIFIIINECQLEVLAFVLS  391 (399)
Q Consensus       369 ~~~~~~~~~~~~~~~~~~~~~l~  391 (399)
                      ++.++.++..  ...++...++.
T Consensus       416 i~~L~~lL~~--~d~~v~~~al~  436 (528)
T 4b8j_A          416 IKPLCDLLIC--PDIRIVTVCLE  436 (528)
T ss_dssp             HHHHHHGGGC--SCHHHHHHHHH
T ss_pred             HHHHHHHHcC--CCHHHHHHHHH
Confidence            5665554433  33344444333

>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...

Probab=100.00  E-value=8.3e-32  Score=260.46  Aligned_cols=289  Identities=20%  Similarity=0.292  Sum_probs=253.9

Q ss_pred             hhHHHHhhhhhcchhhhHHHHHHHHHHHHHHcCC-hhHHHHHHhCCChHHHHhcccCCCCcccccCCCcchHHHHHHHHH
Q 015851           60 SAQVNVLNTTFSWLEADRAAAKRATHVLAELAKN-EEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAF  138 (399)
Q Consensus        60 ~~~~~~L~~~l~~~~~~~~~~~~a~~~L~~l~~~-~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~~~~~a~~  138 (399)
                      .+.+|.|..++  .+.+..++..|+|+|++++.+ +..+..+.+.|++++|+.+|...+....       ...+++.++|
T Consensus       142 ~GaIp~Lv~lL--~s~~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~-------~~~~~~~a~~  212 (510)
T 3ul1_B          142 GGAIPAFISLL--ASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTL-------ACGYLRNLTW  212 (510)
T ss_dssp             TTHHHHHHHHT--TCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGS-------CHHHHHHHHH
T ss_pred             CCCHHHHHHHH--cCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHHHHhccchhh-------hHHHHHHHHH
Confidence            45788888888  456778999999999999996 8899999999999999999987654211       2367889999


Q ss_pred             HHHHhcCCh-hhHHHHHhcCcHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhhc
Q 015851          139 ALGLLAVKP-EHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLE  217 (399)
Q Consensus       139 ~L~~l~~~~-~~~~~i~~~~~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~  217 (399)
                      +|.+++.+. .........++++.|++++.+.+.        +++..++|+|.+|+.........+...|+++.|+.+|.
T Consensus       213 ~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~--------~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~  284 (510)
T 3ul1_B          213 TLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDP--------EVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLG  284 (510)
T ss_dssp             HHHHHHCCCSSCCCHHHHHHHHHHHHHHTTCSCH--------HHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHT
T ss_pred             HHHHHhhcccchhHHHHHHhHHHHHHHHHhcCCH--------HHHHHHHHHHHHHhhchhhhHHHHHhcccchhhhhhhc
Confidence            999999443 333334446789999999987766        89999999999999877777777888899999999999


Q ss_pred             CCCHHHHHHHHHHHHHhhcCChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHHCCCcHHHH
Q 015851          218 FTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVI  297 (399)
Q Consensus       218 ~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~  297 (399)
                      ++++.++..++++|+|++.+++..+..+++.|+++.|+.+|.++++.++..|+|+|+||+.+++..+..+.+.|+++.|+
T Consensus       285 ~~~~~v~~~al~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~v~~~A~~aL~nl~a~~~~~~~~v~~~g~i~~Lv  364 (510)
T 3ul1_B          285 ATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLV  364 (510)
T ss_dssp             CSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGCC-CTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHH
T ss_pred             CCChhhhhHHHHHHHHhhcCCHHHHHHHhhccchHHHHHHhcCCCHHHHHHHHHHHHHHHcCcHHHHHHHHhcCCHHHHH
Confidence            99999999999999999998888899999999999999999999999999999999999998888899999999999999


Q ss_pred             HhhcCCChHHHHHHHHHHHHhhcc-ChhhHHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhccCC
Q 015851          298 GLLSSCCSESQREAALLLGQFAAT-DSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQVIT  365 (399)
Q Consensus       298 ~lL~~~~~~v~~~a~~~L~~l~~~-~~~~~~~l~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~  365 (399)
                      .++.+++..++.+|+|+|+|++.. +++....+.+.|+++.|++++.+++++++..++++|.|+....+
T Consensus       365 ~lL~~~~~~v~~~Aa~aL~Nl~~~~~~~~~~~L~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~~~  433 (510)
T 3ul1_B          365 GVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAE  433 (510)
T ss_dssp             HHHHSSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHcCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhH
Confidence            999999999999999999999975 45777889999999999999999999999999999999987544

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}

Probab=100.00  E-value=7e-32  Score=267.25  Aligned_cols=287  Identities=16%  Similarity=0.146  Sum_probs=246.3

Q ss_pred             hhhhhhHHHHhhhhhcchhhhHHHHHHHHHHHHHHcCChh------------------------------HH---HHHHh
Q 015851           56 LSEVSAQVNVLNTTFSWLEADRAAAKRATHVLAELAKNEE------------------------------VV---NWIVE  102 (399)
Q Consensus        56 ~~~~~~~~~~L~~~l~~~~~~~~~~~~a~~~L~~l~~~~~------------------------------~~---~~~~~  102 (399)
                      .....+++|.|..++.  +.+..++..|+++|.|++.+.+                              .+   ..+++
T Consensus       416 lv~d~g~Ip~LV~LL~--s~d~~i~~~al~~L~NLt~~~d~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~Vve  493 (810)
T 3now_A          416 LIEDKASIHALMDLAR--GGNQSCLYGVVTTFVNLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLAN  493 (810)
T ss_dssp             HHHCHHHHHHHHHHHH--TTCGGGHHHHHHHHHHHTTCSCCCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHH
T ss_pred             HHHccchHHHHHHHhC--CCChHHHHHHHHHHHHHcCCchhhhhhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHH
Confidence            3444678888888884  4567789999999999998531                              22   67889


Q ss_pred             CCChHHHHhcccCCCCcccccCCCcchHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHHHhccccCccccccHHHH
Q 015851          103 GGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVI  182 (399)
Q Consensus       103 ~g~l~~L~~lL~~~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~~~i~~L~~~L~~~~~~~~~~~~~~~~  182 (399)
                      .|++|.|+++|+++++            .++++|+|+|+|++.+++++..+++.|++++|+.+|.+...        ..+
T Consensus       494 aGaVp~LV~LL~s~s~------------~vqe~Aa~aL~NLA~d~~~r~~Vv~~Gaip~Lv~LL~s~~~--------~~k  553 (810)
T 3now_A          494 EGITTALCALAKTESH------------NSQELIARVLNAVCGLKELRGKVVQEGGVKALLRMALEGTE--------KGK  553 (810)
T ss_dssp             TTHHHHHHHHHTCCCH------------HHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHHHSSCH--------HHH
T ss_pred             CcCHHHHHHHHcCCCH------------HHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHccCCH--------HHH
Confidence            9999999999998766            89999999999999888999999999999999999988765        889


Q ss_pred             HHHHHHHHHHhhcCchhHHH--HHhcCChHHHHHhhcCCC-HHHHHHHHHHHHHhhcCChhhHHHHHhcCCHHHHHHhhc
Q 015851          183 RRAADAITNLAHENSSIKTR--VRMEGGIPPLVELLEFTD-TKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLR  259 (399)
Q Consensus       183 ~~a~~~L~~l~~~~~~~~~~--~~~~~~i~~L~~ll~~~~-~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~L~~ll~  259 (399)
                      +.++|+|.+|+.........  ....+++|.|+.+|.++. ...+..|+++|.||+.++++.+..+++.|+++.|+.++.
T Consensus       554 ~~Aa~AL~nL~~~~~p~~~~~~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~~~~~Ii~aG~l~~Lv~LL~  633 (810)
T 3now_A          554 RHATQALARIGITINPEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLM  633 (810)
T ss_dssp             HHHHHHHHHHHHHSCHHHHTTTHHHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCCChhhhhcchhhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHc
Confidence            99999999999643321110  012469999999998764 455678999999999977888999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHhhcCChhHHHHHHH-CCCcHHHHHhhcCCChHHHHHHHHHHHHhhccChhhHHHHHh-cCCHHH
Q 015851          260 SEDSAIHYEAVGVIGNLVHSSPNIKKEVLA-AGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQ-RGAVRP  337 (399)
Q Consensus       260 ~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~-~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~-~g~v~~  337 (399)
                      ++++.++..|+++|+||+.+ +..+..+.+ .|.++.|+.++.+.+..++.+|+|+|+|++.+++...+.+.+ .|+++.
T Consensus       634 s~~~~Vq~~A~~~L~NLa~~-~~~~~~~v~~~g~l~~Lv~LL~s~d~~vq~~Aa~ALanLt~~s~~~~~~ii~~~g~I~~  712 (810)
T 3now_A          634 EDHLYLTRAAAQCLCNLVMS-EDVIKMFEGNNDRVKFLALLCEDEDEETATACAGALAIITSVSVKCCEKILAIASWLDI  712 (810)
T ss_dssp             SCCTTHHHHHHHHHHHHTTS-HHHHHHHHSSSSHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHCHHHHHHHHTSTTHHHH
T ss_pred             CCCHHHHHHHHHHHHHHhCC-hHHHHHHHhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCHHH
Confidence            99999999999999999976 556666665 689999999999999999999999999999867888888888 899999


Q ss_pred             HHHhhCCCCHHHHHHHHHHHHHhhccCC
Q 015851          338 LIEMLQSPDVQLREMSAFALGRLAQVIT  365 (399)
Q Consensus       338 L~~ll~~~~~~v~~~a~~~L~~l~~~~~  365 (399)
                      |+.++.+++.++++.|+++|.|++..++
T Consensus       713 Lv~LL~s~d~~vq~~A~~aL~NL~~~s~  740 (810)
T 3now_A          713 LHTLIANPSPAVQHRGIVIILNMINAGE  740 (810)
T ss_dssp             HHHHHTCSSHHHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHCCCCHHHHHHHHHHHHHHHhCCH
Confidence            9999999999999999999999998654

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A

Probab=100.00  E-value=4.4e-31  Score=257.26  Aligned_cols=309  Identities=18%  Similarity=0.265  Sum_probs=264.6

Q ss_pred             hhHHHHhhhhhcchhhhHHHHHHHHHHHHHHcCC-hhHHHHHHhCCChHHHHhcccCCCCcccccCCCcchHHHHHHHHH
Q 015851           60 SAQVNVLNTTFSWLEADRAAAKRATHVLAELAKN-EEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAF  138 (399)
Q Consensus        60 ~~~~~~L~~~l~~~~~~~~~~~~a~~~L~~l~~~-~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~~~~~a~~  138 (399)
                      .+.++.|..++... +++.+|..|+|+|.+++.+ ++.+..+++.|+++.|+.+|.+++.            +++..|++
T Consensus       129 ~g~i~~Lv~~L~~~-~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~------------~vr~~A~~  195 (530)
T 1wa5_B          129 AGVVPRLVEFMREN-QPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSV------------EVKEQAIW  195 (530)
T ss_dssp             TTCHHHHHHTTSTT-SCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHCCH------------HHHHHHHH
T ss_pred             CCCHHHHHHHhCCC-CCHHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHcCCCH------------HHHHHHHH
Confidence            45677777777422 2678999999999999995 7888899999999999999997655            89999999


Q ss_pred             HHHHhc-CChhhHHHHHhcCcHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhhc
Q 015851          139 ALGLLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLE  217 (399)
Q Consensus       139 ~L~~l~-~~~~~~~~i~~~~~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~  217 (399)
                      +|++++ .++.++..+...|+++.|+.++.+.+.        +++..++|+|.+|+.............++++.|+.++.
T Consensus       196 aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~--------~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~  267 (530)
T 1wa5_B          196 ALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKP--------SLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIY  267 (530)
T ss_dssp             HHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSCCH--------HHHHHHHHHHHHHHCCSSSCCCHHHHGGGHHHHHHHTT
T ss_pred             HHHHHhCCCccchHHHHHcCcHHHHHHHhccCCH--------HHHHHHHHHHHHHhCCCCCCCcHHHHHhHHHHHHHHHc
Confidence            999999 668899999999999999999987443        89999999999999755222234556899999999999


Q ss_pred             CCCHHHHHHHHHHHHHhhcCChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHHCCCcHHHH
Q 015851          218 FTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVI  297 (399)
Q Consensus       218 ~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~  297 (399)
                      ++++.++..++++|++|+.+.++....+.+.|+++.|+.++.++++.++..|+++|++++.+++.....+++.|+++.|+
T Consensus       268 ~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~  347 (530)
T 1wa5_B          268 SMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALR  347 (530)
T ss_dssp             CCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHhCCCHHHHHHHHhcCcHHHHHHHHCCCChhhHHHHHHHHHHHHcCCHHHHHHHHHcchHHHHH
Confidence            99999999999999999987777888889999999999999999999999999999999988788888889999999999


Q ss_pred             HhhcCCChHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhccCCC-----------
Q 015851          298 GLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQVITV-----------  366 (399)
Q Consensus       298 ~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~-----------  366 (399)
                      .+|.++++.++..|+++|+|++.++++....+.+.|+++.|+.++.++++.++..|+++|++++.....           
T Consensus       348 ~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~l~~~  427 (530)
T 1wa5_B          348 LLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQ  427 (530)
T ss_dssp             HHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTTCTHHHHHHHHT
T ss_pred             HHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHC
Confidence            999999999999999999999987788888888999999999999989999999999999999986432           


Q ss_pred             CcchhHHHHHhhccccHHHHHHHHh
Q 015851          367 SVLPAILIFIIINECQLEVLAFVLS  391 (399)
Q Consensus       367 ~~~~~~~~~~~~~~~~~~~~~~~l~  391 (399)
                      +.++.++..+...  ..++...++.
T Consensus       428 ~~l~~L~~ll~~~--~~~v~~~al~  450 (530)
T 1wa5_B          428 GCIKPLCDLLEIA--DNRIIEVTLD  450 (530)
T ss_dssp             TCHHHHHHHTTTC--CHHHHHHHHH
T ss_pred             CCHHHHHHHHhCC--CHHHHHHHHH
Confidence            3566665554433  3344444333

>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A

Probab=100.00  E-value=6.8e-31  Score=255.92  Aligned_cols=297  Identities=19%  Similarity=0.261  Sum_probs=257.5

Q ss_pred             hHHHHhhhhhcchhhhHHHHHHHHHHHHHHcCC-h-hHHHHHHhCCChHHHHhcccCCCCcccccCCCcchHHHHHHHHH
Q 015851           61 AQVNVLNTTFSWLEADRAAAKRATHVLAELAKN-E-EVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAF  138 (399)
Q Consensus        61 ~~~~~L~~~l~~~~~~~~~~~~a~~~L~~l~~~-~-~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~~~~~a~~  138 (399)
                      ..++.|...+  .++++.+|..|++.|.+++.. + .....+++.|+++.|+++|.+++.           +.++..|++
T Consensus        74 ~~l~~lv~~L--~s~~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~~-----------~~v~~~A~~  140 (528)
T 4b8j_A           74 ESLPAMIGGV--YSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDF-----------PQLQFEAAW  140 (528)
T ss_dssp             -CHHHHHHHH--TSSCHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCTTC-----------HHHHHHHHH
T ss_pred             HHHHHHHHHH--cCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCCCC-----------HHHHHHHHH
Confidence            3456666666  345778999999999999764 3 677888999999999999988652           289999999


Q ss_pred             HHHHhc-CChhhHHHHHhcCcHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhh-
Q 015851          139 ALGLLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELL-  216 (399)
Q Consensus       139 ~L~~l~-~~~~~~~~i~~~~~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll-  216 (399)
                      +|++++ .+++.+..+.+.|+++.|+.+|.+.+.        +++..++|+|++++.+.+..+..+...|+++.|+.++ 
T Consensus       141 ~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~--------~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~  212 (528)
T 4b8j_A          141 ALTNIASGTSENTKVVIDHGAVPIFVKLLGSSSD--------DVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLN  212 (528)
T ss_dssp             HHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCH--------HHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCC
T ss_pred             HHHHHhCCCHHHHHHHHhCCcHHHHHHHhcCCCH--------HHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHh
Confidence            999999 569999999999999999999998655        8999999999999988888888888899999999999 


Q ss_pred             cCCCHHHHHHHHHHHHHhhcCChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHHCCCcHHH
Q 015851          217 EFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPV  296 (399)
Q Consensus       217 ~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L  296 (399)
                      .+.++.++..++++|++|+.+.+.. ......++++.|+.++.+++++++..|+++|++++...+.....+++.|+++.|
T Consensus       213 ~~~~~~v~~~a~~~L~~L~~~~~~~-~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~L  291 (528)
T 4b8j_A          213 EHTKLSMLRNATWTLSNFCRGKPQP-SFEQTRPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRL  291 (528)
T ss_dssp             TTCCHHHHHHHHHHHHHHHCSSSCC-CHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTCHHHH
T ss_pred             cCCCHHHHHHHHHHHHHHHcCCCCC-cHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCHHHHH
Confidence            6678999999999999999854333 334457899999999999999999999999999998777777888999999999


Q ss_pred             HHhhcCCChHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHhhCCC-CHHHHHHHHHHHHHhhccCCC--------C
Q 015851          297 IGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSP-DVQLREMSAFALGRLAQVITV--------S  367 (399)
Q Consensus       297 ~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~v~~L~~ll~~~-~~~v~~~a~~~L~~l~~~~~~--------~  367 (399)
                      +.+|.++++.++..|+++|+|++.+++.....+.+.|+++.|+.++.++ ++.++..|+++|.|++...+.        +
T Consensus       292 v~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~~~~~~~~~~~~~~  371 (528)
T 4b8j_A          292 VELLLHPSPSVLIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNKDQIQAVINAG  371 (528)
T ss_dssp             HHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTSCHHHHHHHHHTT
T ss_pred             HHHHcCCChhHHHHHHHHHHHHHcCCHHHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHCCCHHHHHHHHHCC
Confidence            9999999999999999999999987788888899999999999999988 999999999999999975442        4


Q ss_pred             cchhHHHHHhhc
Q 015851          368 VLPAILIFIIIN  379 (399)
Q Consensus       368 ~~~~~~~~~~~~  379 (399)
                      ++|.++..+...
T Consensus       372 ~i~~L~~lL~~~  383 (528)
T 4b8j_A          372 IIGPLVNLLQTA  383 (528)
T ss_dssp             CHHHHHHHHHHS
T ss_pred             CHHHHHHHHhcC
Confidence            667776666444

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A

Probab=99.98  E-value=1.3e-29  Score=246.95  Aligned_cols=298  Identities=18%  Similarity=0.277  Sum_probs=257.9

Q ss_pred             hhHHHHhhhhhcchhhhHHHHHHHHHHHHHHcCC--hhHHHHHHhCCChHHHHhcccCC-CCcccccCCCcchHHHHHHH
Q 015851           60 SAQVNVLNTTFSWLEADRAAAKRATHVLAELAKN--EEVVNWIVEGGAVPALVKHLQAP-PTSEADRNLKPFEHEVEKGS  136 (399)
Q Consensus        60 ~~~~~~L~~~l~~~~~~~~~~~~a~~~L~~l~~~--~~~~~~~~~~g~l~~L~~lL~~~-~~~~~~~~~~~~~~~~~~~a  136 (399)
                      ...++.|...+.  ++++.+|..|++.|.++...  ......+++.|+++.|+++|.++ +.            .++..|
T Consensus        86 ~~~i~~lv~~L~--s~~~~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~~~~~------------~v~~~A  151 (530)
T 1wa5_B           86 QQELPQMTQQLN--SDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPE------------MLQLEA  151 (530)
T ss_dssp             -CCHHHHHHHHS--CSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCH------------HHHHHH
T ss_pred             HHHHHHHHHHHc--CCCHHHHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhCCCCCH------------HHHHHH
Confidence            344666666663  45678999999999999763  45567788999999999999886 33            899999


Q ss_pred             HHHHHHhc-CChhhHHHHHhcCcHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHh
Q 015851          137 AFALGLLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVEL  215 (399)
Q Consensus       137 ~~~L~~l~-~~~~~~~~i~~~~~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~l  215 (399)
                      +++|++++ .+++.+..+++.|+++.|+.+|.+.+.        ++++.++++|++++...+..+..+...|+++.|+.+
T Consensus       152 ~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~--------~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~l  223 (530)
T 1wa5_B          152 AWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSV--------EVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGL  223 (530)
T ss_dssp             HHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHCCH--------HHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHG
T ss_pred             HHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHcCCCH--------HHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHH
Confidence            99999999 678889999999999999999997655        899999999999998777888888889999999999


Q ss_pred             hcCCCHHHHHHHHHHHHHhhcCChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHHCCCcHH
Q 015851          216 LEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQP  295 (399)
Q Consensus       216 l~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~  295 (399)
                      +.+.++.++..++++|++|+.+...........++++.|+.++.++++.++..|+++|++++...+.....+++.|+++.
T Consensus       224 l~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~  303 (530)
T 1wa5_B          224 FNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKR  303 (530)
T ss_dssp             GGSCCHHHHHHHHHHHHHHHCCSSSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHH
T ss_pred             hccCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhcCcHHH
Confidence            99999999999999999999854244445556789999999999999999999999999999877777888899999999


Q ss_pred             HHHhhcCCChHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhccCC--------CC
Q 015851          296 VIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQVIT--------VS  367 (399)
Q Consensus       296 L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~--------~~  367 (399)
                      |+.+|.++++.++..|+++|++++.+++.....+.+.|+++.|+.++.++++.++..|+++|++++...+        .+
T Consensus       304 Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~  383 (530)
T 1wa5_B          304 LVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDAN  383 (530)
T ss_dssp             HHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTT
T ss_pred             HHHHHCCCChhhHHHHHHHHHHHHcCCHHHHHHHHHcchHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCC
Confidence            9999999999999999999999998777888888999999999999999999999999999999997543        24


Q ss_pred             cchhHHHHHhhc
Q 015851          368 VLPAILIFIIIN  379 (399)
Q Consensus       368 ~~~~~~~~~~~~  379 (399)
                      ++|.++..+...
T Consensus       384 ~l~~L~~lL~~~  395 (530)
T 1wa5_B          384 LIPPLVKLLEVA  395 (530)
T ss_dssp             CHHHHHHHHHHS
T ss_pred             CHHHHHHHHhcC
Confidence            677776666433

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24

Probab=99.98  E-value=4.5e-31  Score=251.58  Aligned_cols=291  Identities=16%  Similarity=0.192  Sum_probs=235.7

Q ss_pred             HHHhhhhhcchhhhHHHHHHHHHHHHHHcCC-hhHHHHHHhCCChHHHHhcccCCCCcccccCCCcchHHHHHHHHHHHH
Q 015851           63 VNVLNTTFSWLEADRAAAKRATHVLAELAKN-EEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALG  141 (399)
Q Consensus        63 ~~~L~~~l~~~~~~~~~~~~a~~~L~~l~~~-~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~~~~~a~~~L~  141 (399)
                      ++.|..++.  +.++.+|..|+++|.+++.+ +..+..+++.|++|.|+++|++++.            +++..|+++|.
T Consensus         4 l~~lv~~L~--s~~~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~------------~~~~~A~~aL~   69 (457)
T 1xm9_A            4 IPKAVQYLS--SQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQ------------NVQQAAAGALR   69 (457)
T ss_dssp             HHHHHHHHH--SSCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCH------------HHHHHHHHHHH
T ss_pred             HHHHHHHHC--CCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHcCCCH------------HHHHHHHHHHH
Confidence            445555553  34667899999999999985 6677799999999999999997655            89999999999


Q ss_pred             Hhc-CChhhHHHHHhcCcHHHHHHHHh-ccccCccccccHHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhhc--
Q 015851          142 LLA-VKPEHQQLIVDNGALSHLVNLLK-RHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLE--  217 (399)
Q Consensus       142 ~l~-~~~~~~~~i~~~~~i~~L~~~L~-~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~--  217 (399)
                      ||+ .+++++..+++.|+++.|+++|. +.+.        ++++.++|+|+||+.+ +..+..+.. |++|.|+.++.  
T Consensus        70 nLa~~~~~~k~~i~~~G~i~~Lv~lL~~~~~~--------~~~~~a~~aL~nLa~~-~~~~~~i~~-g~i~~Lv~ll~~~  139 (457)
T 1xm9_A           70 NLVFRSTTNKLETRRQNGIREAVSLLRRTGNA--------EIQKQLTGLLWNLSST-DELKEELIA-DALPVLADRVIIP  139 (457)
T ss_dssp             HHHSSCHHHHHHHHHTTCHHHHHHHHTTCCCH--------HHHHHHHHHHHHHHTS-SSTHHHHHH-HHHHHHHHHTTHH
T ss_pred             HHhcCCHHHHHHHHHcCCHHHHHHHHhhCCCH--------HHHHHHHHHHHHHhcC-HHhHHHHHh-ccHHHHHHHHhcc
Confidence            999 56999999999999999999998 4444        8999999999999976 667777888 99999999993  


Q ss_pred             ------C--------CCHHHHHHHHHHHHHhhcCChhhHHHHHhc-CCHHHHHHhhcC------CCHHHHHHHHHHHHHh
Q 015851          218 ------F--------TDTKVQRAAAGALRTLAFKNDENKNQIVEC-NALPTLILMLRS------EDSAIHYEAVGVIGNL  276 (399)
Q Consensus       218 ------~--------~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~-~~~~~L~~ll~~------~~~~v~~~a~~~L~~l  276 (399)
                            +        .++.+++.|+++|+||+.+ ++++..+.+. |+++.|+.+|.+      .+..+...++++|.|+
T Consensus       140 ~s~~~~~~~~~~~e~~~~~v~~~a~~aL~nLs~~-~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nL  218 (457)
T 1xm9_A          140 FSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSA-DAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNL  218 (457)
T ss_dssp             HHTCC---------CCCHHHHHHHHHHHHHHTTS-HHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHH
T ss_pred             ccccccCccchhcccccHHHHHHHHHHHHHHccC-HHHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhc
Confidence                  2        2467788999999999985 8889999997 999999999985      4567888999999998


Q ss_pred             hcCC--------------------------------------------------hhHHHHHHHCCCcHHHHHhhcC-CCh
Q 015851          277 VHSS--------------------------------------------------PNIKKEVLAAGALQPVIGLLSS-CCS  305 (399)
Q Consensus       277 ~~~~--------------------------------------------------~~~~~~~~~~~~l~~L~~lL~~-~~~  305 (399)
                      +...                                                  +...+.+++.|+++.++.+|.+ .++
T Consensus       219 s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~  298 (457)
T 1xm9_A          219 SYRLDAEVPTRYRQLEYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKD  298 (457)
T ss_dssp             TTTHHHHSCCHHHHHHHTC----------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCH
T ss_pred             ccchhccCcchhhhcccccccccccccccchhhccchhhhhccccCCccccccCchHHHHHhCcchHHHHHHHHhhcCCH
Confidence            7310                                                  0111233445667888899874 468


Q ss_pred             HHHHHHHHHHHHhhccChhh-----HHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhccCCCC------cchhHHH
Q 015851          306 ESQREAALLLGQFAATDSDC-----KVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQVITVS------VLPAILI  374 (399)
Q Consensus       306 ~v~~~a~~~L~~l~~~~~~~-----~~~l~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~------~~~~~~~  374 (399)
                      .+++.|+|+|+|++.++...     +..+.+.|++|.|++++.+++.++++.|+++|.|++.+....      .+|.++.
T Consensus       299 ~~~e~a~~aL~nl~~~~~~~~~~~~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~nls~~~~~~~~i~~~~i~~Lv~  378 (457)
T 1xm9_A          299 ATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHPLLHRVMGNQVFPEVTR  378 (457)
T ss_dssp             HHHHHHHHHHHHHTTCSSSHHHHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSGGGHHHHHHHTHHHHHH
T ss_pred             HHHHHHHHHHHHhccCcCcchHHHHHHHHHHcCCchHHHHHHhCCCHhHHHHHHHHHHHHhcCHHHHHHHHHhhhHHHHH
Confidence            99999999999999764332     233446899999999999999999999999999999876542      5666666


Q ss_pred             HHhh
Q 015851          375 FIII  378 (399)
Q Consensus       375 ~~~~  378 (399)
                      .+..
T Consensus       379 lL~~  382 (457)
T 1xm9_A          379 LLTS  382 (457)
T ss_dssp             TTTS
T ss_pred             hccC
Confidence            5543

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}

Probab=99.98  E-value=4.2e-31  Score=261.68  Aligned_cols=285  Identities=18%  Similarity=0.203  Sum_probs=246.9

Q ss_pred             hhhHHHHhhhhhcchhhhHHHHHHHHHHHHHHcCChhHHHHHHhCCChHHHHhcccCCCCcccccCCCcchHHHHHHHHH
Q 015851           59 VSAQVNVLNTTFSWLEADRAAAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAF  138 (399)
Q Consensus        59 ~~~~~~~L~~~l~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~~~~~a~~  138 (399)
                      ..+.+|.|..++.  +.++.+|..|+|+|.|++.+++++..+++.|++++|+.+|.+.+.            ..++.|+|
T Consensus       493 eaGaVp~LV~LL~--s~s~~vqe~Aa~aL~NLA~d~~~r~~Vv~~Gaip~Lv~LL~s~~~------------~~k~~Aa~  558 (810)
T 3now_A          493 NEGITTALCALAK--TESHNSQELIARVLNAVCGLKELRGKVVQEGGVKALLRMALEGTE------------KGKRHATQ  558 (810)
T ss_dssp             HTTHHHHHHHHHT--CCCHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHHHSSCH------------HHHHHHHH
T ss_pred             HCcCHHHHHHHHc--CCCHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHccCCH------------HHHHHHHH
Confidence            4468888888884  456789999999999999998999999999999999999987655            78999999


Q ss_pred             HHHHhc--CChhhHHH-HHhcCcHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHh
Q 015851          139 ALGLLA--VKPEHQQL-IVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVEL  215 (399)
Q Consensus       139 ~L~~l~--~~~~~~~~-i~~~~~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~l  215 (399)
                      +|++++  .+|+..-. ....|++++|+.+|......       ..+..++++|.||+..++..+..+...|+++.|+.+
T Consensus       559 AL~nL~~~~~p~~~~~~~~~~~aIppLv~LL~~~~~~-------l~~~eAl~AL~NLa~~~d~~~~~Ii~aG~l~~Lv~L  631 (810)
T 3now_A          559 ALARIGITINPEVSFSGQRSLDVIRPLLNLLQQDCTA-------LENFESLMALTNLASMNESVRQRIIKEQGVSKIEYY  631 (810)
T ss_dssp             HHHHHHHHSCHHHHTTTHHHHHTHHHHHHTTSTTSCH-------HHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHH
T ss_pred             HHHHHhcCCChhhhhcchhhhcHHHHHHHHhCCCCcH-------HHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHH
Confidence            999998  34432110 01235899999999754321       334689999999998777888888899999999999


Q ss_pred             hcCCCHHHHHHHHHHHHHhhcCChhhHHHHHh-cCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHH-CCCc
Q 015851          216 LEFTDTKVQRAAAGALRTLAFKNDENKNQIVE-CNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLA-AGAL  293 (399)
Q Consensus       216 l~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~-~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~-~~~l  293 (399)
                      +.++++.+++.|+++|+||+. +++....+.+ .|.++.|+.++.+++.+++..|+|+|+|++.+++...+.+++ .|++
T Consensus       632 L~s~~~~Vq~~A~~~L~NLa~-~~~~~~~~v~~~g~l~~Lv~LL~s~d~~vq~~Aa~ALanLt~~s~~~~~~ii~~~g~I  710 (810)
T 3now_A          632 LMEDHLYLTRAAAQCLCNLVM-SEDVIKMFEGNNDRVKFLALLCEDEDEETATACAGALAIITSVSVKCCEKILAIASWL  710 (810)
T ss_dssp             HHSCCTTHHHHHHHHHHHHTT-SHHHHHHHHSSSSHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHCHHHHHHHHTSTTHH
T ss_pred             HcCCCHHHHHHHHHHHHHHhC-ChHHHHHHHhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCH
Confidence            999999999999999999998 5777777775 789999999999999999999999999999866777888888 8999


Q ss_pred             HHHHHhhcCCChHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHhhCCC---CHHHHHHHHHHHHHhhccCC
Q 015851          294 QPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSP---DVQLREMSAFALGRLAQVIT  365 (399)
Q Consensus       294 ~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~v~~L~~ll~~~---~~~v~~~a~~~L~~l~~~~~  365 (399)
                      +.|+.+|.+++.+++..|+|+|.|++..+++....+.+.|++++|..+++.+   +.++.+.|..+|.++.....
T Consensus       711 ~~Lv~LL~s~d~~vq~~A~~aL~NL~~~s~e~~~~l~e~G~i~~L~~LL~~~d~~~~~i~e~Al~aL~~ll~~g~  785 (810)
T 3now_A          711 DILHTLIANPSPAVQHRGIVIILNMINAGEEIAKKLFETDIMELLSGLGQLPDDTRAKAREVATQCLAAAERYRI  785 (810)
T ss_dssp             HHHHHHHTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHTSTHHHHHTTSCCCTTSTTHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHCCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHhCcccCcHHHHHHHHHHHHHHHhCCC
Confidence            9999999999999999999999999987788899999999999999999654   79999999999999986544

>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}

Probab=99.97  E-value=9e-30  Score=223.66  Aligned_cols=245  Identities=31%  Similarity=0.371  Sum_probs=228.8

Q ss_pred             CChHHHHhcccCCCCcccccCCCcchHHHHHHHHHHHHHhc-CChhhHHHHHhcCcHHHHHHHHhccccCccccccHHHH
Q 015851          104 GAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVI  182 (399)
Q Consensus       104 g~l~~L~~lL~~~~~~~~~~~~~~~~~~~~~~a~~~L~~l~-~~~~~~~~i~~~~~i~~L~~~L~~~~~~~~~~~~~~~~  182 (399)
                      |.++.|+++|.+++.            +++..|+++|.+++ .+++++..+.+.|+++.|+.++.+.+.        +++
T Consensus         2 ~~i~~L~~~L~~~~~------------~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~--------~v~   61 (252)
T 4hxt_A            2 NDVEKLVKLLTSTDS------------ETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDS--------EVQ   61 (252)
T ss_dssp             CHHHHHHHHTTCSCH------------HHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCH--------HHH
T ss_pred             CcHHHHHHHHcCCCH------------HHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCH--------HHH
Confidence            678999999998765            89999999999999 666799999999999999999998765        899


Q ss_pred             HHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhhHHHHHhcCCHHHHHHhhcCCC
Q 015851          183 RRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSED  262 (399)
Q Consensus       183 ~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~L~~ll~~~~  262 (399)
                      ..++++|.+++..++..+..+...|+++.++.++.++++.++..++++|++++..+++.+..+.+.|+++.|+.++.+++
T Consensus        62 ~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~  141 (252)
T 4hxt_A           62 KEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTD  141 (252)
T ss_dssp             HHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSC
T ss_pred             HHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCC
Confidence            99999999999877888888999999999999999999999999999999999778899999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhhcCChhHHHHHHHCCCcHHHHHhhcCCChHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHhh
Q 015851          263 SAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEML  342 (399)
Q Consensus       263 ~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~v~~L~~ll  342 (399)
                      +.++..++++|++++..++..+..+.+.|+++.|+.++.++++.++..|+++|++++..++..+..+.+.|+++.|++++
T Consensus       142 ~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll  221 (252)
T 4hxt_A          142 SEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQKLL  221 (252)
T ss_dssp             HHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBHHHHHHHHHTTHHHHHHHGG
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHH
Confidence            99999999999999987788878899999999999999999999999999999999987788889999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHhhccCCCCc
Q 015851          343 QSPDVQLREMSAFALGRLAQVITVSV  368 (399)
Q Consensus       343 ~~~~~~v~~~a~~~L~~l~~~~~~~~  368 (399)
                      .++++.+++.|+++|.|++...++..
T Consensus       222 ~~~~~~v~~~a~~~L~~l~~~~~~~~  247 (252)
T 4hxt_A          222 TSTDSEVQKEAQRALENIKSGGWLEH  247 (252)
T ss_dssp             GCSCHHHHHHHHHHHHHHHHTCBCCC
T ss_pred             CCCcHHHHHHHHHHHHHHHcCCCccc
Confidence            99999999999999999999887653

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A

Probab=99.97  E-value=1.6e-29  Score=241.18  Aligned_cols=310  Identities=19%  Similarity=0.259  Sum_probs=261.4

Q ss_pred             hHHHHhhhhhcchhhhHHHHHHHHHHHHHHcCC-hhHHHHHHhCCChHHHHhcccCCCCcccccCCCcchHHHHHHHHHH
Q 015851           61 AQVNVLNTTFSWLEADRAAAKRATHVLAELAKN-EEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFA  139 (399)
Q Consensus        61 ~~~~~L~~~l~~~~~~~~~~~~a~~~L~~l~~~-~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~~~~~a~~~  139 (399)
                      +.++.|...+.. ++++.+|..|+++|.+++.+ ++....+++.|+++.|+++|.+++.            ++|..|+++
T Consensus        64 ~~i~~L~~~L~~-~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~------------~vr~~a~~~  130 (450)
T 2jdq_A           64 GVVARFVEFLKR-KENCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFE------------DVQEQAVWA  130 (450)
T ss_dssp             THHHHHHHHHTC-TTCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTHHHHHHHHTTCSCH------------HHHHHHHHH
T ss_pred             CcHHHHHHHHCC-CCCHHHHHHHHHHHHHHhcCCHHHHHHHHhCCCHHHHHHHHcCCCH------------HHHHHHHHH
Confidence            677777777742 22678999999999999985 7888888899999999999998655            899999999


Q ss_pred             HHHhc-CChhhHHHHHhcCcHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhhcC-chhHHHHHhcCChHHHHHhhc
Q 015851          140 LGLLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHEN-SSIKTRVRMEGGIPPLVELLE  217 (399)
Q Consensus       140 L~~l~-~~~~~~~~i~~~~~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~~~~i~~L~~ll~  217 (399)
                      |++++ .+++.+..+.+.|+++.|+.++.+..+.       +++..++++|++++... +.....+ ..++++.|+.++.
T Consensus       131 L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~-------~v~~~a~~~L~~l~~~~~~~~~~~~-~~~~l~~L~~~l~  202 (450)
T 2jdq_A          131 LGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRL-------TMTRNAVWALSNLCRGKSPPPEFAK-VSPCLNVLSWLLF  202 (450)
T ss_dssp             HHHHHTTCHHHHHHHHHTTCHHHHHHHTTSCCCH-------HHHHHHHHHHHHHHCCSSSCCCGGG-TGGGHHHHHHHTT
T ss_pred             HHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCCH-------HHHHHHHHHHHHHhCCCCCCCCHHH-HHHHHHHHHHHHc
Confidence            99999 6678999999999999999999863322       89999999999999654 3322222 2789999999999


Q ss_pred             CCCHHHHHHHHHHHHHhhcCChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHHCCCcHHHH
Q 015851          218 FTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVI  297 (399)
Q Consensus       218 ~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~  297 (399)
                      ++++.++..++++|.+++.+.++....+...|+++.|+.++.++++.++..|+++|++++.+.+.....+.+.|+++.|+
T Consensus       203 ~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~  282 (450)
T 2jdq_A          203 VSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLL  282 (450)
T ss_dssp             CCCHHHHHHHHHHHHHHTSSSHHHHHHHHHTTTHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHHHCCCcHHHHHHHHcCcHHHHHHHHCCCchhHHHHHHHHHHHHhhCChHHHHHHHHCccHHHHH
Confidence            99999999999999999987677788888899999999999999999999999999999988777777888899999999


Q ss_pred             HhhcCCChHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhccCC-C--------Cc
Q 015851          298 GLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQVIT-V--------SV  368 (399)
Q Consensus       298 ~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~-~--------~~  368 (399)
                      .++.++++.++..|+++|+|++.++++....+.+.|+++.|+.++.++++.++..|+++|++++.... .        +.
T Consensus       283 ~ll~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~l~~~~~  362 (450)
T 2jdq_A          283 HLLSSPKESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQTAEFRTRKEAAWAITNATSGGSAEQIKYLVELGC  362 (450)
T ss_dssp             HHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHTC
T ss_pred             HHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCC
Confidence            99999999999999999999998778888888899999999999999999999999999999997632 1        35


Q ss_pred             chhHHHHHhhccccHHHHHHHHhhh
Q 015851          369 LPAILIFIIINECQLEVLAFVLSEM  393 (399)
Q Consensus       369 ~~~~~~~~~~~~~~~~~~~~~l~~~  393 (399)
                      +|.++..+.  +...++...++..+
T Consensus       363 i~~L~~ll~--~~~~~v~~~a~~aL  385 (450)
T 2jdq_A          363 IKPLCDLLT--VMDSKIVQVALNGL  385 (450)
T ss_dssp             HHHHHHGGG--SSCHHHHHHHHHHH
T ss_pred             HHHHHHHhc--CCCHHHHHHHHHHH
Confidence            566555443  33344444444433

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A

Probab=99.97  E-value=4.7e-30  Score=246.30  Aligned_cols=297  Identities=19%  Similarity=0.223  Sum_probs=238.5

Q ss_pred             hhhhHHHHhhhhhcchhhhHHHHHHHHHHHHHHcC-ChhHHHHHHhCCChHHHHhcccCCCCcccccCCCcchHHHHHHH
Q 015851           58 EVSAQVNVLNTTFSWLEADRAAAKRATHVLAELAK-NEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGS  136 (399)
Q Consensus        58 ~~~~~~~~L~~~l~~~~~~~~~~~~a~~~L~~l~~-~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~~~~~a  136 (399)
                      +...-++.|..++.  +.+..+|..|+++|.+++. +++++..+++.|+||.|+++|.+++.            +++++|
T Consensus        45 ~~~~~i~~LV~~L~--s~~~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s~~~------------~vq~~A  110 (584)
T 3l6x_A           45 WRQPELPEVIAMLG--FRLDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKK------------EVHLGA  110 (584)
T ss_dssp             CCCCCHHHHHHHTT--CSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGGCSSH------------HHHHHH
T ss_pred             cccccHHHHHHHHC--CCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHCCCCH------------HHHHHH
Confidence            33445666777663  4567789999999999997 69999999999999999999998765            899999


Q ss_pred             HHHHHHhcC--ChhhHHHHHhcCcHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHH
Q 015851          137 AFALGLLAV--KPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVE  214 (399)
Q Consensus       137 ~~~L~~l~~--~~~~~~~i~~~~~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~  214 (399)
                      +++|.||+.  +++++..+.+.|+|+.|+.+|.+..+.       ++++.++++|+||+. ++..+..+.. +++|.|+.
T Consensus       111 a~AL~nLa~~~~~~nk~~I~~~GaIp~LV~LL~s~~~~-------~~~e~aa~aL~nLS~-~~~~k~~I~~-~alp~Lv~  181 (584)
T 3l6x_A          111 CGALKNISFGRDQDNKIAIKNCDGVPALVRLLRKARDM-------DLTEVITGTLWNLSS-HDSIKMEIVD-HALHALTD  181 (584)
T ss_dssp             HHHHHHHTSSSCHHHHHHHHHTTHHHHHHHHHHHCCSH-------HHHHHHHHHHHHHTT-SGGGHHHHHH-HTHHHHHH
T ss_pred             HHHHHHHHccCCHHHHHHHHHcCCHHHHHHHHcCCCCH-------HHHHHHHHHHHHHhC-CchhhHHHHh-ccHHHHHH
Confidence            999999994  599999999999999999999975432       889999999999996 5667777774 57999999


Q ss_pred             hhc------------------CCCHHHHHHHHHHHHHhhcCChhhHHHHHhc-CCHHHHHHhhcC------CCHHHHHHH
Q 015851          215 LLE------------------FTDTKVQRAAAGALRTLAFKNDENKNQIVEC-NALPTLILMLRS------EDSAIHYEA  269 (399)
Q Consensus       215 ll~------------------~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~-~~~~~L~~ll~~------~~~~v~~~a  269 (399)
                      ++.                  ..++.++..|+++|.||+..+++++..+++. |+++.|+.++++      .+...++.|
T Consensus       182 LL~~p~sg~~~~~~~~~k~~~~~d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~ena  261 (584)
T 3l6x_A          182 EVIIPHSGWEREPNEDCKPRHIEWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENC  261 (584)
T ss_dssp             HTHHHHHCCC----------CCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHH
T ss_pred             HHhcccccccccccccccccccccHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHH
Confidence            871                  2357999999999999999777788888885 557899999874      466899999


Q ss_pred             HHHHHHhhcCChh-------------------------HHHHHHHCCCcHHHHHhhc-CCChHHHHHHHHHHHHhhccCh
Q 015851          270 VGVIGNLVHSSPN-------------------------IKKEVLAAGALQPVIGLLS-SCCSESQREAALLLGQFAATDS  323 (399)
Q Consensus       270 ~~~L~~l~~~~~~-------------------------~~~~~~~~~~l~~L~~lL~-~~~~~v~~~a~~~L~~l~~~~~  323 (399)
                      +++|.||+.....                         ....+++.++++.++.+|. +.++.+++.|+++|.|++.+..
T Consensus       262 v~aL~NLs~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~  341 (584)
T 3l6x_A          262 VCLLRNLSYQVHREIPQAERYQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRW  341 (584)
T ss_dssp             HHHHHHHHTTHHHHSTTCCC--------------CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSSCS
T ss_pred             HHHHHHhhccccccccchhhhhhhcccccccccccCchhHHHHhcccHHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCc
Confidence            9999999854110                         0011112234667888886 5678999999999999997642


Q ss_pred             ----hhHHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhccCCCC------cchhHHHHHh
Q 015851          324 ----DCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQVITVS------VLPAILIFII  377 (399)
Q Consensus       324 ----~~~~~l~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~------~~~~~~~~~~  377 (399)
                          ..+..+.+.+++|.|+++|.+++..+++.|+++|+||+.+..++      .+|.++..+.
T Consensus       342 ~~~~~~~~~v~~~~glp~Lv~LL~s~~~~v~~~A~~aL~nLs~~~~~~~~I~~g~ip~LV~LL~  405 (584)
T 3l6x_A          342 TYGRYIRSALRQEKALSAIADLLTNEHERVVKAASGALRNLAVDARNKELIGKHAIPNLVKNLP  405 (584)
T ss_dssp             HHHHHHHHHHTSHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSS
T ss_pred             cccHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhCChhHHHHHHhCCHHHHHHHhc
Confidence                23345556889999999999999999999999999999988764      4555555443

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A

Probab=99.97  E-value=3.5e-29  Score=228.56  Aligned_cols=249  Identities=18%  Similarity=0.222  Sum_probs=212.9

Q ss_pred             hhhhHHHHhhhhhcc---------hhhhHHHHHHHHHHHHHHcCC-hhHHHHHHhC-CChHHHHhcccCCCCcccccCCC
Q 015851           58 EVSAQVNVLNTTFSW---------LEADRAAAKRATHVLAELAKN-EEVVNWIVEG-GAVPALVKHLQAPPTSEADRNLK  126 (399)
Q Consensus        58 ~~~~~~~~L~~~l~~---------~~~~~~~~~~a~~~L~~l~~~-~~~~~~~~~~-g~l~~L~~lL~~~~~~~~~~~~~  126 (399)
                      ...+.++.|..++..         ...++.+|..|+|+|.+++.+ +.++..+... |+||.|+++|.+++.        
T Consensus        70 ~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~~~--------  141 (354)
T 3nmw_A           70 NELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESE--------  141 (354)
T ss_dssp             HHTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHCHHHHHHHHHGGGCSCH--------
T ss_pred             HHcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCcHHHHHHHHCCCCH--------
Confidence            344566666666631         224577999999999999986 5577777655 559999999997665        


Q ss_pred             cchHHHHHHHHHHHHHhcC--ChhhHHHHHhcCcHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhhcCchhHHHHH
Q 015851          127 PFEHEVEKGSAFALGLLAV--KPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVR  204 (399)
Q Consensus       127 ~~~~~~~~~a~~~L~~l~~--~~~~~~~i~~~~~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~  204 (399)
                          ++++.|+++|.||+.  +++++..+.+.|+++.|+++|.+..+.       ++++.++++|+||+.+++..+..+.
T Consensus       142 ----~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~~~-------~~~~~A~~aL~nLs~~~~~nk~~i~  210 (354)
T 3nmw_A          142 ----DLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKE-------STLKSVLSALWNLSAHCTENKADIC  210 (354)
T ss_dssp             ----HHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHCCCH-------HHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             ----HHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHHhcCCCH-------HHHHHHHHHHHHHHccChhhhHHHH
Confidence                899999999999994  578999999999999999986544332       8899999999999976766676676


Q ss_pred             -hcCChHHHHHhhcCCCH----HHHHHHHHHHHHhhc---CChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHh
Q 015851          205 -MEGGIPPLVELLEFTDT----KVQRAAAGALRTLAF---KNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNL  276 (399)
Q Consensus       205 -~~~~i~~L~~ll~~~~~----~v~~~a~~~L~~L~~---~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l  276 (399)
                       ..|+++.|+.+|.++++    +++..|+++|+||+.   .+++++..+.+.|+++.|+.+|.+++.+++..|+++|+|+
T Consensus       211 ~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL  290 (354)
T 3nmw_A          211 AVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNL  290 (354)
T ss_dssp             HSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred             HhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence             68999999999987654    599999999999996   5789999999999999999999999999999999999999


Q ss_pred             hcCChhHHHHHHHCCCcHHHHHhhcCCChHHHHHHHHHHHHhhccChhh
Q 015851          277 VHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDC  325 (399)
Q Consensus       277 ~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~  325 (399)
                      +..+++.+..+++.|+++.|+.+|.+++..++++|+++|.|++...+..
T Consensus       291 a~~~~~~~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~~~~~~~  339 (354)
T 3nmw_A          291 SARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRPAK  339 (354)
T ss_dssp             TSSCHHHHHHHHHTTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCCGG
T ss_pred             hCCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCHHH
Confidence            9777888999999999999999999999999999999999999876543

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A

Probab=99.97  E-value=9.3e-29  Score=235.89  Aligned_cols=284  Identities=21%  Similarity=0.274  Sum_probs=249.5

Q ss_pred             hhHHHHhhhhhcchhhhHHHHHHHHHHHHHHcCC-hhHHHHHHhCCChHHHHhcccCCCCcccccCCCcchHHHHHHHHH
Q 015851           60 SAQVNVLNTTFSWLEADRAAAKRATHVLAELAKN-EEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAF  138 (399)
Q Consensus        60 ~~~~~~L~~~l~~~~~~~~~~~~a~~~L~~l~~~-~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~~~~~a~~  138 (399)
                      .+.++.|..++.  ++++.+|..|+++|.+++.+ +..+..+.+.|+++.|+.++.++..           ++++..+++
T Consensus       106 ~~~i~~L~~lL~--~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~-----------~~v~~~a~~  172 (450)
T 2jdq_A          106 AGAVPIFIELLS--SEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNR-----------LTMTRNAVW  172 (450)
T ss_dssp             TTHHHHHHHHTT--CSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTSCCC-----------HHHHHHHHH
T ss_pred             CCCHHHHHHHHc--CCCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCC-----------HHHHHHHHH
Confidence            567888888874  45788999999999999996 7888899999999999999985322           289999999


Q ss_pred             HHHHhcCC--hhhHHHHHhcCcHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhh
Q 015851          139 ALGLLAVK--PEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELL  216 (399)
Q Consensus       139 ~L~~l~~~--~~~~~~i~~~~~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll  216 (399)
                      +|++++.+  +.....+. .++++.|+.++.+.+.        +++..++|+|.+++...+.....+...++++.|+.++
T Consensus       173 ~L~~l~~~~~~~~~~~~~-~~~l~~L~~~l~~~~~--------~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll  243 (450)
T 2jdq_A          173 ALSNLCRGKSPPPEFAKV-SPCLNVLSWLLFVSDT--------DVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELL  243 (450)
T ss_dssp             HHHHHHCCSSSCCCGGGT-GGGHHHHHHHTTCCCH--------HHHHHHHHHHHHHTSSSHHHHHHHHHTTTHHHHHHHT
T ss_pred             HHHHHhCCCCCCCCHHHH-HHHHHHHHHHHccCCH--------HHHHHHHHHHHHHHCCCcHHHHHHHHcCcHHHHHHHH
Confidence            99999943  44333333 7899999999986654        8999999999999976666666677889999999999


Q ss_pred             cCCCHHHHHHHHHHHHHhhcCChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHHCCCcHHH
Q 015851          217 EFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPV  296 (399)
Q Consensus       217 ~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L  296 (399)
                      .++++.++..++++|++++.+.+.....+.+.|+++.|+.++.++++.++..|+++|++++.+++.....+++.|+++.|
T Consensus       244 ~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L  323 (450)
T 2jdq_A          244 MHNDYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDANIFPAL  323 (450)
T ss_dssp             TCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHH
T ss_pred             CCCchhHHHHHHHHHHHHhhCChHHHHHHHHCccHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHH
Confidence            99999999999999999999777777788889999999999999999999999999999998778888888899999999


Q ss_pred             HHhhcCCChHHHHHHHHHHHHhhcc-ChhhHHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhccCC
Q 015851          297 IGLLSSCCSESQREAALLLGQFAAT-DSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQVIT  365 (399)
Q Consensus       297 ~~lL~~~~~~v~~~a~~~L~~l~~~-~~~~~~~l~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~  365 (399)
                      +.+|.++++.++.+|+++|+|++.. +++..+.+.+.|+++.|+.++.+++++++..|+++|.+++...+
T Consensus       324 ~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~  393 (450)
T 2jdq_A          324 ISILQTAEFRTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVALNGLENILRLGE  393 (450)
T ss_dssp             HHHHHHSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHTCHHHHHHGGGSSCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHhch
Confidence            9999999999999999999999975 56777888899999999999999999999999999999997654

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24

Probab=99.97  E-value=3.2e-29  Score=238.85  Aligned_cols=290  Identities=16%  Similarity=0.167  Sum_probs=237.2

Q ss_pred             hhhHHHHhhhhhcchhhhHHHHHHHHHHHHHHcCC-hhHHHHHHhCCChHHHHhccc-CCCCcccccCCCcchHHHHHHH
Q 015851           59 VSAQVNVLNTTFSWLEADRAAAKRATHVLAELAKN-EEVVNWIVEGGAVPALVKHLQ-APPTSEADRNLKPFEHEVEKGS  136 (399)
Q Consensus        59 ~~~~~~~L~~~l~~~~~~~~~~~~a~~~L~~l~~~-~~~~~~~~~~g~l~~L~~lL~-~~~~~~~~~~~~~~~~~~~~~a  136 (399)
                      ..+.+|.|..++.  +.++.++..|+++|.+++.+ ++++..+++.|++|.|+++|. +.+.            ++++++
T Consensus        42 ~~g~i~~Lv~lL~--s~~~~~~~~A~~aL~nLa~~~~~~k~~i~~~G~i~~Lv~lL~~~~~~------------~~~~~a  107 (457)
T 1xm9_A           42 QLGGICKLVDLLR--SPNQNVQQAAAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNA------------EIQKQL  107 (457)
T ss_dssp             HTTHHHHHHHHTT--SSCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHHHTTCCCH------------HHHHHH
T ss_pred             HcCCHHHHHHHHc--CCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhhCCCH------------HHHHHH
Confidence            4567888888884  45778899999999999996 999999999999999999998 5444            899999


Q ss_pred             HHHHHHhcCChhhHHHHHhcCcHHHHHHHHhc--------cccCccccccHHHHHHHHHHHHHHhhcCchhHHHHHhc-C
Q 015851          137 AFALGLLAVKPEHQQLIVDNGALSHLVNLLKR--------HMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRME-G  207 (399)
Q Consensus       137 ~~~L~~l~~~~~~~~~i~~~~~i~~L~~~L~~--------~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~-~  207 (399)
                      +|+|+||+.+++++..+.+ |+++.|+++|..        ...........++.+.++|+|+||+.. +..+..+.+. |
T Consensus       108 ~~aL~nLa~~~~~~~~i~~-g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v~~~a~~aL~nLs~~-~~~~~~i~~~~g  185 (457)
T 1xm9_A          108 TGLLWNLSSTDELKEELIA-DALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSA-DAGRQTMRNYSG  185 (457)
T ss_dssp             HHHHHHHHTSSSTHHHHHH-HHHHHHHHHTTHHHHTCC---------CCCHHHHHHHHHHHHHHTTS-HHHHHHHTTSTT
T ss_pred             HHHHHHHhcCHHhHHHHHh-ccHHHHHHHHhccccccccCccchhcccccHHHHHHHHHHHHHHccC-HHHHHHHHHcCC
Confidence            9999999977899999999 999999999942        111000001127888999999999965 7777777776 8


Q ss_pred             ChHHHHHhhcC---------------------------------------------------------------------
Q 015851          208 GIPPLVELLEF---------------------------------------------------------------------  218 (399)
Q Consensus       208 ~i~~L~~ll~~---------------------------------------------------------------------  218 (399)
                      +++.|+.+|.+                                                                     
T Consensus       186 ~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  265 (457)
T 1xm9_A          186 LIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYTEKSSTGCFSNKSDKMMNNNYDCP  265 (457)
T ss_dssp             HHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC----------------------------
T ss_pred             CHHHHHHHHHhhccccCCchHHHHHHHHHHHhcccchhccCcchhhhcccccccccccccccchhhccchhhhhccccCC
Confidence            88888877653                                                                     


Q ss_pred             ------------------------------CCHHHHHHHHHHHHHhhcCChhh-----HHHHHhcCCHHHHHHhhcCCCH
Q 015851          219 ------------------------------TDTKVQRAAAGALRTLAFKNDEN-----KNQIVECNALPTLILMLRSEDS  263 (399)
Q Consensus       219 ------------------------------~~~~v~~~a~~~L~~L~~~~~~~-----~~~~~~~~~~~~L~~ll~~~~~  263 (399)
                                                    .++.+++.|+++|+||+.++...     +..+.+.|++|.|+.+|.+++.
T Consensus       266 ~~~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~~~~~~~~~~~~~v~~~~~l~~Lv~LL~~~~~  345 (457)
T 1xm9_A          266 LPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNS  345 (457)
T ss_dssp             CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHHHHHHHHHHTTSCCHHHHHHHTTCSCH
T ss_pred             ccccccCchHHHHHhCcchHHHHHHHHhhcCCHHHHHHHHHHHHHhccCcCcchHHHHHHHHHHcCCchHHHHHHhCCCH
Confidence                                          13566777899999999754332     2233468999999999999999


Q ss_pred             HHHHHHHHHHHHhhcCChhHHHHHHHCCCcHHHHHhhcCCCh------HHHHHHHHHHHHhhccChhhHHHHHhcCCHHH
Q 015851          264 AIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCS------ESQREAALLLGQFAATDSDCKVHIVQRGAVRP  337 (399)
Q Consensus       264 ~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~------~v~~~a~~~L~~l~~~~~~~~~~l~~~g~v~~  337 (399)
                      +++..|+|+|.|++.+ +.. ..++..|+++.|+++|..+++      ++...++++|.|+...+++....+.+.|+++.
T Consensus       346 ~v~~~A~~aL~nls~~-~~~-~~~i~~~~i~~Lv~lL~~~~~~~~~~~~v~~~~l~~l~ni~~~~~~~~~~i~~~g~l~~  423 (457)
T 1xm9_A          346 DVVRSGASLLSNMSRH-PLL-HRVMGNQVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSMLNN  423 (457)
T ss_dssp             HHHHHHHHHHHHHHTS-GGG-HHHHHHHTHHHHHHTTTSCCSCSTTHHHHHHHHHHHHHHHHTTCTHHHHHHCCHHHHHH
T ss_pred             hHHHHHHHHHHHHhcC-HHH-HHHHHHhhhHHHHHhccCCCCCCCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcCCHHH
Confidence            9999999999999974 455 445566899999999987643      68889999999999888889999999999999


Q ss_pred             HHHhhCCC-CHHHHHHHHHHHHHhhccCCC
Q 015851          338 LIEMLQSP-DVQLREMSAFALGRLAQVITV  366 (399)
Q Consensus       338 L~~ll~~~-~~~v~~~a~~~L~~l~~~~~~  366 (399)
                      |+.++.++ +.++++.|.++|.++..+.+-
T Consensus       424 L~~L~~~~~~~~i~~~A~~~L~~~~~~~~l  453 (457)
T 1xm9_A          424 IINLCRSSASPKAAEAARLLLSDMWSSKEL  453 (457)
T ss_dssp             HHHHHHCTTCHHHHHHHHHHHHTTSSSTTC
T ss_pred             HHHHHcCCCcHHHHHHHHHHHHHHHcchhh
Confidence            99999998 999999999999999977653

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}

Probab=99.97  E-value=8.3e-29  Score=217.73  Aligned_cols=240  Identities=24%  Similarity=0.347  Sum_probs=219.6

Q ss_pred             CChHHHHhcccCCCCcccccCCCcchHHHHHHHHHHHHHhc-CChhhHHHHHhcCcHHHHHHHHhccccCccccccHHHH
Q 015851          104 GAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVI  182 (399)
Q Consensus       104 g~l~~L~~lL~~~~~~~~~~~~~~~~~~~~~~a~~~L~~l~-~~~~~~~~i~~~~~i~~L~~~L~~~~~~~~~~~~~~~~  182 (399)
                      ...+.+...|.+++.            +++..|+++|.++. .+++.+..+.+.|+++.|+++|.+.+.        +++
T Consensus        12 ~~~~~~~~~L~s~~~------------~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~--------~v~   71 (252)
T 4db8_A           12 SELPQMTQQLNSDDM------------QEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNE--------QIL   71 (252)
T ss_dssp             CSHHHHHHHHHSSCS------------SHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSCH--------HHH
T ss_pred             chHHHHHHHHcCCCH------------HHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCCH--------HHH
Confidence            467889999998887            78889999997766 677888899999999999999998764        899


Q ss_pred             HHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhhHHHHHhcCCHHHHHHhhcCCC
Q 015851          183 RRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSED  262 (399)
Q Consensus       183 ~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~L~~ll~~~~  262 (399)
                      ..++++|.+++..++..+..+...|+++.|+.+|.++++.++..++++|++|+.+.+.....+.+.|+++.|+.++.+++
T Consensus        72 ~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~  151 (252)
T 4db8_A           72 QEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPN  151 (252)
T ss_dssp             HHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSC
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCC
Confidence            99999999999878888888999999999999999999999999999999999854444488999999999999999999


Q ss_pred             HHHHHHHHHHHHHhhcCChhHHHHHHHCCCcHHHHHhhcCCChHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHhh
Q 015851          263 SAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEML  342 (399)
Q Consensus       263 ~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~v~~L~~ll  342 (399)
                      +.++..|+++|++++..++.....+.+.|+++.|+.++.++++.++..|+++|+|++..+++.+..+.+.|+++.|++++
T Consensus       152 ~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll  231 (252)
T 4db8_A          152 EQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQ  231 (252)
T ss_dssp             HHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHTTT
T ss_pred             HHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHh
Confidence            99999999999999987788888889999999999999999999999999999999987888899999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHhhcc
Q 015851          343 QSPDVQLREMSAFALGRLAQV  363 (399)
Q Consensus       343 ~~~~~~v~~~a~~~L~~l~~~  363 (399)
                      .++++.+++.|+++|.||+.+
T Consensus       232 ~~~~~~v~~~A~~~L~~l~~~  252 (252)
T 4db8_A          232 SHENEKIQKEAQEALEKLQSH  252 (252)
T ss_dssp             TCSSSHHHHTHHHHHHTTC--
T ss_pred             CCCCHHHHHHHHHHHHHHhcC
Confidence            999999999999999999853

>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}

Probab=99.97  E-value=3.6e-28  Score=213.39  Aligned_cols=239  Identities=33%  Similarity=0.403  Sum_probs=217.9

Q ss_pred             HHHhhhhhcchhhhHHHHHHHHHHHHHHcCC-hhHHHHHHhCCChHHHHhcccCCCCcccccCCCcchHHHHHHHHHHHH
Q 015851           63 VNVLNTTFSWLEADRAAAKRATHVLAELAKN-EEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALG  141 (399)
Q Consensus        63 ~~~L~~~l~~~~~~~~~~~~a~~~L~~l~~~-~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~~~~~a~~~L~  141 (399)
                      ++.|...+.  +.++.+|..|+++|.+++.+ ++++..+.+.|+++.|+++|.+++.            +++..++++|+
T Consensus         4 i~~L~~~L~--~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~------------~v~~~a~~~L~   69 (252)
T 4hxt_A            4 VEKLVKLLT--STDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDS------------EVQKEAARALA   69 (252)
T ss_dssp             HHHHHHHTT--CSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCH------------HHHHHHHHHHH
T ss_pred             HHHHHHHHc--CCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCH------------HHHHHHHHHHH
Confidence            555666663  34578999999999999986 6799999999999999999998765            89999999999


Q ss_pred             Hhc-CChhhHHHHHhcCcHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhhcCCC
Q 015851          142 LLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTD  220 (399)
Q Consensus       142 ~l~-~~~~~~~~i~~~~~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~  220 (399)
                      +++ .+++++..+.+.|+++.++.++.+.+.        +++..++++|.+++..++..+..+...|+++.|+.++.+++
T Consensus        70 ~l~~~~~~~~~~~~~~~~i~~l~~ll~~~~~--------~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~  141 (252)
T 4hxt_A           70 NIASGPDEAIKAIVDAGGVEVLVKLLTSTDS--------EVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTD  141 (252)
T ss_dssp             HHTTSCHHHHHHHHHTTHHHHHHHHTTCSSH--------HHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSC
T ss_pred             HHHcCChHHHHHHHHCCCHHHHHHHHcCCCH--------HHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCC
Confidence            999 559999999999999999999997654        89999999999999878888888899999999999999999


Q ss_pred             HHHHHHHHHHHHHhhcCChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHHCCCcHHHHHhh
Q 015851          221 TKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLL  300 (399)
Q Consensus       221 ~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL  300 (399)
                      +.++..++++|++++.+.+.....+.+.|+++.|+.++.++++.++..|+++|++++..++..+..+.+.|+++.|+.++
T Consensus       142 ~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll  221 (252)
T 4hxt_A          142 SEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQKLL  221 (252)
T ss_dssp             HHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBHHHHHHHHHTTHHHHHHHGG
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHH
Confidence            99999999999999997788888899999999999999999999999999999999987788888999999999999999


Q ss_pred             cCCChHHHHHHHHHHHHhhccCh
Q 015851          301 SSCCSESQREAALLLGQFAATDS  323 (399)
Q Consensus       301 ~~~~~~v~~~a~~~L~~l~~~~~  323 (399)
                      .++++.++..|+++|+|++...+
T Consensus       222 ~~~~~~v~~~a~~~L~~l~~~~~  244 (252)
T 4hxt_A          222 TSTDSEVQKEAQRALENIKSGGW  244 (252)
T ss_dssp             GCSCHHHHHHHHHHHHHHHHTCB
T ss_pred             CCCcHHHHHHHHHHHHHHHcCCC
Confidence            99999999999999999997543

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A

Probab=99.96  E-value=9.1e-28  Score=230.47  Aligned_cols=292  Identities=17%  Similarity=0.173  Sum_probs=228.4

Q ss_pred             hhhhHHHHhhhhhcchhhhHHHHHHHHHHHHHHcCC--hhHHHHHHhCCChHHHHhcccCCCCcccccCCCcchHHHHHH
Q 015851           58 EVSAQVNVLNTTFSWLEADRAAAKRATHVLAELAKN--EEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKG  135 (399)
Q Consensus        58 ~~~~~~~~L~~~l~~~~~~~~~~~~a~~~L~~l~~~--~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~~~~~  135 (399)
                      ...+.+|.|..++.  +.+..+|..|+++|.||+.+  ++++..+++.|+|+.|+.+|.+...           .+++++
T Consensus        87 ~~~G~Ip~LV~LL~--s~~~~vq~~Aa~AL~nLa~~~~~~nk~~I~~~GaIp~LV~LL~s~~~-----------~~~~e~  153 (584)
T 3l6x_A           87 RKLKGIPVLVGLLD--HPKKEVHLGACGALKNISFGRDQDNKIAIKNCDGVPALVRLLRKARD-----------MDLTEV  153 (584)
T ss_dssp             HHTTHHHHHHHGGG--CSSHHHHHHHHHHHHHHTSSSCHHHHHHHHHTTHHHHHHHHHHHCCS-----------HHHHHH
T ss_pred             HHcCCcHHHHHHHC--CCCHHHHHHHHHHHHHHHccCCHHHHHHHHHcCCHHHHHHHHcCCCC-----------HHHHHH
Confidence            34567888888884  45778999999999999983  8999999999999999999997433           178999


Q ss_pred             HHHHHHHhcCChhhHHHHHhcCcHHHHHHHHhccc---cC-------ccccccHHHHHHHHHHHHHHhhcCchhHHHHHh
Q 015851          136 SAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHM---DS-------NCSRAVNSVIRRAADAITNLAHENSSIKTRVRM  205 (399)
Q Consensus       136 a~~~L~~l~~~~~~~~~i~~~~~i~~L~~~L~~~~---~~-------~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~  205 (399)
                      ++++|++|+.+++++..|++ ++++.|++++....   ..       .......++++.++++|.||+..++..+..+..
T Consensus       154 aa~aL~nLS~~~~~k~~I~~-~alp~Lv~LL~~p~sg~~~~~~~~~k~~~~~d~~V~~nAa~~L~NLs~~~~~~R~~i~~  232 (584)
T 3l6x_A          154 ITGTLWNLSSHDSIKMEIVD-HALHALTDEVIIPHSGWEREPNEDCKPRHIEWESVLTNTAGCLRNVSSERSEARRKLRE  232 (584)
T ss_dssp             HHHHHHHHTTSGGGHHHHHH-HTHHHHHHHTHHHHHCCC----------CCCCHHHHHHHHHHHHHHTSSCHHHHHHHHH
T ss_pred             HHHHHHHHhCCchhhHHHHh-ccHHHHHHHHhcccccccccccccccccccccHHHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence            99999999988999999996 57999999873110   00       000001278888888888888766555555554


Q ss_pred             cC-ChHHHHH----------------------------------------------------------------------
Q 015851          206 EG-GIPPLVE----------------------------------------------------------------------  214 (399)
Q Consensus       206 ~~-~i~~L~~----------------------------------------------------------------------  214 (399)
                      .+ +++.|+.                                                                      
T Consensus       233 ~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~Gve~L~~~~~v~~  312 (584)
T 3l6x_A          233 CDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQEAAPNVANNTGTSPARGYELLFQPEVVRI  312 (584)
T ss_dssp             STTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTTHHHHSTTCCC--------------CCCCGGGGGGSHHHHHH
T ss_pred             cCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhccccccccchhhhhhhcccccccccccCchhHHHHhcccHHHH
Confidence            32 2334433                                                                      


Q ss_pred             ---hhc-CCCHHHHHHHHHHHHHhhcCCh----hhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHH
Q 015851          215 ---LLE-FTDTKVQRAAAGALRTLAFKND----ENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKE  286 (399)
Q Consensus       215 ---ll~-~~~~~v~~~a~~~L~~L~~~~~----~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~  286 (399)
                         +|. +.++.+++.|+++|.||+.+..    ..+..+.+.+++|.|+.+|.++++.++..|+++|+||+.+. ..+ .
T Consensus       313 Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~Lv~LL~s~~~~v~~~A~~aL~nLs~~~-~~~-~  390 (584)
T 3l6x_A          313 YISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADLLTNEHERVVKAASGALRNLAVDA-RNK-E  390 (584)
T ss_dssp             HHHHHHHCCCHHHHHHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTC-SCH-H
T ss_pred             HHHHHccCCCHHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhCCh-hHH-H
Confidence               332 2346777888888888876432    22334455788999999999999999999999999999764 444 4


Q ss_pred             HHHCCCcHHHHHhhcCC--------ChHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHhhCCC--CHHHHHHHHHH
Q 015851          287 VLAAGALQPVIGLLSSC--------CSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSP--DVQLREMSAFA  356 (399)
Q Consensus       287 ~~~~~~l~~L~~lL~~~--------~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~v~~L~~ll~~~--~~~v~~~a~~~  356 (399)
                      ++..|+++.|+.+|.++        +.++...|+++|.|++..++++++.+.+.|+++.|+.++.++  .+.+++.|+++
T Consensus       391 ~I~~g~ip~LV~LL~~~~~~~~~~~s~~v~~~a~~tL~NL~a~~~~~~~~I~~~g~I~~Lv~LL~s~~~~~~v~k~Aa~v  470 (584)
T 3l6x_A          391 LIGKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAENLEAAKKLRETQGIEKLVLINKSGNRSEKEVRAAALV  470 (584)
T ss_dssp             HHHHHHHHHHHHTSSSSSCSGGGTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTCSSSCHHHHHHHHHH
T ss_pred             HHHhCCHHHHHHHhcCCcccccccchHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCCChHHHHHHHHH
Confidence            55789999999999875        457889999999999988899999999999999999999876  89999999999


Q ss_pred             HHHhhccCC
Q 015851          357 LGRLAQVIT  365 (399)
Q Consensus       357 L~~l~~~~~  365 (399)
                      |+++..+.+
T Consensus       471 L~nl~~~~e  479 (584)
T 3l6x_A          471 LQTIWGYKE  479 (584)
T ss_dssp             HHHHHTSHH
T ss_pred             HHHHHcCHH
Confidence            999997555

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}

Probab=99.96  E-value=5.4e-28  Score=212.52  Aligned_cols=227  Identities=28%  Similarity=0.393  Sum_probs=207.5

Q ss_pred             hhhHHHHHHHHHHHHHHcC-ChhHHHHHHhCCChHHHHhcccCCCCcccccCCCcchHHHHHHHHHHHHHhc-CChhhHH
Q 015851           74 EADRAAAKRATHVLAELAK-NEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA-VKPEHQQ  151 (399)
Q Consensus        74 ~~~~~~~~~a~~~L~~l~~-~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~~~~~a~~~L~~l~-~~~~~~~  151 (399)
                      ++++++|..|+++|.++.. +++.+..+.+.|+++.|+++|.+++.            +++..|+++|++++ .+++++.
T Consensus        23 s~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~------------~v~~~a~~~L~~l~~~~~~~~~   90 (252)
T 4db8_A           23 SDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNE------------QILQEALWALSNIASGGNEQIQ   90 (252)
T ss_dssp             SSCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSCH------------HHHHHHHHHHHHHTTSCHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCCH------------HHHHHHHHHHHHHhcCCHHHHH
Confidence            4567789999999988666 58888899999999999999998765            89999999999999 5899999


Q ss_pred             HHHhcCcHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHH
Q 015851          152 LIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGAL  231 (399)
Q Consensus       152 ~i~~~~~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L  231 (399)
                      .+.+.|+++.|+.+|.+.+.        +++..++++|++++...+.....+...|+++.|+.+|.++++.++..++++|
T Consensus        91 ~i~~~g~i~~L~~lL~~~~~--------~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L  162 (252)
T 4db8_A           91 AVIDAGALPALVQLLSSPNE--------QILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWAL  162 (252)
T ss_dssp             HHHHTTHHHHHHHGGGCSCH--------HHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHcCCCH--------HHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHH
Confidence            99999999999999998655        8999999999999976555447788899999999999999999999999999


Q ss_pred             HHhhcCChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHHCCCcHHHHHhhcCCChHHHHHH
Q 015851          232 RTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREA  311 (399)
Q Consensus       232 ~~L~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a  311 (399)
                      ++|+.+.++....+.+.|+++.|+.++.++++.++..|+++|++++..++..+..+.+.|+++.|+.++.++++.++.+|
T Consensus       163 ~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~A  242 (252)
T 4db8_A          163 SNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEA  242 (252)
T ss_dssp             HHHTTSCHHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHTTTTCSSSHHHHTH
T ss_pred             HHHHcCChHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhCCCCHHHHHHH
Confidence            99999778888889999999999999999999999999999999998788888899999999999999999999999999


Q ss_pred             HHHHHHhhc
Q 015851          312 ALLLGQFAA  320 (399)
Q Consensus       312 ~~~L~~l~~  320 (399)
                      +++|+|++.
T Consensus       243 ~~~L~~l~~  251 (252)
T 4db8_A          243 QEALEKLQS  251 (252)
T ss_dssp             HHHHHTTC-
T ss_pred             HHHHHHHhc
Confidence            999999974

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A

Probab=99.96  E-value=1.1e-26  Score=226.12  Aligned_cols=294  Identities=22%  Similarity=0.284  Sum_probs=251.1

Q ss_pred             hhHHHHhhhhhcchhhhHHHHHHHHHHHHHHcCChhHHHHHHhC-CChHHHHhcccCCCCcccccCCCcchHHHHHHHHH
Q 015851           60 SAQVNVLNTTFSWLEADRAAAKRATHVLAELAKNEEVVNWIVEG-GAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAF  138 (399)
Q Consensus        60 ~~~~~~L~~~l~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~-g~l~~L~~lL~~~~~~~~~~~~~~~~~~~~~~a~~  138 (399)
                      .+.++.|..++.  ++++.+|..|+.+|.+++.++..+..+... |+++.|+++|.+.+.           ++++..+++
T Consensus        16 ~~~i~~Lv~lL~--~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~~~i~~Lv~~L~~~~~-----------~~~~~~a~~   82 (529)
T 1jdh_A           16 TRAIPELTKLLN--DEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTND-----------VETARCTAG   82 (529)
T ss_dssp             -CHHHHHHHHHT--CSCHHHHHHHHHHHHHHHTSHHHHHHHHTCHHHHHHHHHHHHHCCC-----------HHHHHHHHH
T ss_pred             HhhHHHHHHHhC--CCCHHHHHHHHHHHHHHHcCCccHHHHHhCcchHHHHHHHHhcCCC-----------HHHHHHHHH
Confidence            445677777663  567889999999999999998888777765 899999999975422           278999999


Q ss_pred             HHHHhcCChhhHHHHHhcCcHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhhcC
Q 015851          139 ALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEF  218 (399)
Q Consensus       139 ~L~~l~~~~~~~~~i~~~~~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~  218 (399)
                      +|.+++.+++++..+.+.|+++.|+.++.+.++        +++..++++|.+++..++..+..+...|+++.|+.++.+
T Consensus        83 ~L~~ls~~~~~~~~i~~~g~i~~L~~lL~~~~~--------~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~  154 (529)
T 1jdh_A           83 TLHNLSHHREGLLAIFKSGGIPALVKMLGSPVD--------SVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNK  154 (529)
T ss_dssp             HHHHHTTSHHHHHHHHHTTHHHHHHHHTTCSCH--------HHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGC
T ss_pred             HHHHHHcCchhHHHHHHcCCHHHHHHHHcCCCH--------HHHHHHHHHHHHHhcCCcchHHHHHHcCCHHHHHHHHhc
Confidence            999999888899999999999999999998664        899999999999998877778888889999999999999


Q ss_pred             CCHHHHHHHHHHHHHhhcCChhhHHHHHhcCCHHHHHHhhcCC-CHHHHHHHHHHHHHhhcCChhHHHHHHHCCCcHHHH
Q 015851          219 TDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSE-DSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVI  297 (399)
Q Consensus       219 ~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~L~~ll~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~  297 (399)
                      +++.++..++.+|.+++.++++++..+.+.|+++.|+.+++++ +...+..++.+|++++.+ +..+..+.+.|+++.|+
T Consensus       155 ~~~~~~~~~~~~L~~la~~~~~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~-~~~~~~~~~~g~~~~L~  233 (529)
T 1jdh_A          155 TNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVC-SSNKPAIVEAGGMQALG  233 (529)
T ss_dssp             CCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTS-TTHHHHHHHTTHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhcC-cccHHHHHHCCCHHHHH
Confidence            9999999999999999998889999999999999999999865 456777899999999964 67788899999999999


Q ss_pred             HhhcCCChHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhccCC--------CCcc
Q 015851          298 GLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQVIT--------VSVL  369 (399)
Q Consensus       298 ~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~--------~~~~  369 (399)
                      .++.++++.++..++++|.|++...+...   ...|+++.|++++.+++++++..|+++|++++.+.+        .+.+
T Consensus       234 ~ll~~~~~~~~~~a~~~L~~l~~~~~~~~---~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v  310 (529)
T 1jdh_A          234 LHLTDPSQRLVQNCLWTLRNLSDAATKQE---GMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGI  310 (529)
T ss_dssp             TTTTSSCHHHHHHHHHHHHHHHTTCTTCS---CCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHHHHHHHHHTTHH
T ss_pred             HHHhCCChHHHHHHHHHHHHHhcCChhhH---HHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCh
Confidence            99999999999999999999997543211   124789999999999999999999999999998654        2355


Q ss_pred             hhHHHHHhh
Q 015851          370 PAILIFIII  378 (399)
Q Consensus       370 ~~~~~~~~~  378 (399)
                      +.++..+..
T Consensus       311 ~~L~~ll~~  319 (529)
T 1jdh_A          311 EALVRTVLR  319 (529)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHc
Confidence            666655543

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A

Probab=99.95  E-value=1.6e-25  Score=217.93  Aligned_cols=296  Identities=21%  Similarity=0.257  Sum_probs=244.8

Q ss_pred             hhHHHHhhhhhcchhhhHHHHHHHHHHHHHHcCChhHHHHHHhCCChHHHHhcccCCCCcccccCCCcchHHHHHHHHHH
Q 015851           60 SAQVNVLNTTFSWLEADRAAAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFA  139 (399)
Q Consensus        60 ~~~~~~L~~~l~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~~~~~a~~~  139 (399)
                      ++.++.|.+.+.. ++++.++..|+++|.+++.+++++..+.+.|+++.|+++|.++++            +++..|+++
T Consensus        58 ~~~i~~Lv~~L~~-~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~g~i~~L~~lL~~~~~------------~v~~~a~~~  124 (529)
T 1jdh_A           58 PQMVSAIVRTMQN-TNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVD------------SVLFYAITT  124 (529)
T ss_dssp             HHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHHTTCSCH------------HHHHHHHHH
T ss_pred             cchHHHHHHHHhc-CCCHHHHHHHHHHHHHHHcCchhHHHHHHcCCHHHHHHHHcCCCH------------HHHHHHHHH
Confidence            4567777776631 236778999999999999998899999999999999999998665            899999999


Q ss_pred             HHHhc-CChhhHHHHHhcCcHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhhcC
Q 015851          140 LGLLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEF  218 (399)
Q Consensus       140 L~~l~-~~~~~~~~i~~~~~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~  218 (399)
                      |.+++ .++..+..+.+.|+++.|+.++.+.+.        +++..++.+|.+++..++..+..+...|+++.++.++++
T Consensus       125 L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~--------~~~~~~~~~L~~la~~~~~~~~~i~~~~~i~~L~~ll~~  196 (529)
T 1jdh_A          125 LHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNV--------KFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRT  196 (529)
T ss_dssp             HHHHHHHCTTHHHHHHHHTHHHHHHHGGGCCCH--------HHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHH
T ss_pred             HHHHhcCCcchHHHHHHcCCHHHHHHHHhcCCH--------HHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHh
Confidence            99999 557788889999999999999997654        888889999999998888888888889999999999987


Q ss_pred             CC-HHHHHHHHHHHHHhhcCChhhHHHHHhcCCHHHHHHh---------------------------------------h
Q 015851          219 TD-TKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILM---------------------------------------L  258 (399)
Q Consensus       219 ~~-~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~L~~l---------------------------------------l  258 (399)
                      ++ ...+..++.+|++++. .++++..+.+.|+++.|+.+                                       +
T Consensus       197 ~~~~~~~~~a~~~L~~l~~-~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~i~~L~~ll  275 (529)
T 1jdh_A          197 YTYEKLLWTTSRVLKVLSV-CSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLL  275 (529)
T ss_dssp             CCCHHHHHHHHHHHHHHTT-STTHHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHHHTTCTTCSCCHHHHHHHHHHT
T ss_pred             CChHHHHHHHHHHHHHHhc-CcccHHHHHHCCCHHHHHHHHhCCChHHHHHHHHHHHHHhcCChhhHHHHhHHHHHHHHH
Confidence            65 5667778888999987 57777777777766555544                                       4


Q ss_pred             cCCCHHHHHHHHHHHHHhhcCChhHHHHHHHCCCcHHHHHhhcC--CChHHHHHHHHHHHHhhccChh---hHHHHHhcC
Q 015851          259 RSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSS--CCSESQREAALLLGQFAATDSD---CKVHIVQRG  333 (399)
Q Consensus       259 ~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~--~~~~v~~~a~~~L~~l~~~~~~---~~~~l~~~g  333 (399)
                      .+++++++..|+++|++++..++..+..+.+.|+++.|+.+|.+  .++.++..|+++|+|++..+++   .+..+.+.|
T Consensus       276 ~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~i~~~~  355 (529)
T 1jdh_A          276 GSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHY  355 (529)
T ss_dssp             TCSCHHHHHHHHHHHHHHTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTT
T ss_pred             cCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHHccCCHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHcC
Confidence            55677888888889999987767788889999999999999975  3479999999999999876443   467888999


Q ss_pred             CHHHHHHhhCCCC-HHHHHHHHHHHHHhhccCCC-------CcchhHHHHHh
Q 015851          334 AVRPLIEMLQSPD-VQLREMSAFALGRLAQVITV-------SVLPAILIFII  377 (399)
Q Consensus       334 ~v~~L~~ll~~~~-~~v~~~a~~~L~~l~~~~~~-------~~~~~~~~~~~  377 (399)
                      +++.|++++.+++ +.++..++++|+|++....+       +.+|.++..+.
T Consensus       356 ~i~~L~~lL~~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~i~~L~~ll~  407 (529)
T 1jdh_A          356 GLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLV  407 (529)
T ss_dssp             CHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGGGHHHHHHTTHHHHHHHHHH
T ss_pred             ChhHHHHHhccccchHHHHHHHHHHHHHhcChhhhHHHHHcCCHHHHHHHHH
Confidence            9999999998876 69999999999999986543       34566555543

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}

Probab=99.95  E-value=7.7e-26  Score=225.18  Aligned_cols=294  Identities=21%  Similarity=0.274  Sum_probs=251.3

Q ss_pred             hhHHHHhhhhhcchhhhHHHHHHHHHHHHHHcCChhHHHHHHhC-CChHHHHhcccCCCCcccccCCCcchHHHHHHHHH
Q 015851           60 SAQVNVLNTTFSWLEADRAAAKRATHVLAELAKNEEVVNWIVEG-GAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAF  138 (399)
Q Consensus        60 ~~~~~~L~~~l~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~-g~l~~L~~lL~~~~~~~~~~~~~~~~~~~~~~a~~  138 (399)
                      .+.++.|..++.  ++++.+|..|+.+|.+++.+...+..++.. |+++.|+++|.+...           ++++..|+.
T Consensus        13 ~g~i~~Lv~lL~--~~~~~vr~~A~~~L~~La~~~~~~~~i~~~~~~i~~Lv~~L~~~~~-----------~~~~~~A~~   79 (644)
T 2z6h_A           13 TRAIPELTKLLN--DEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTND-----------VETARCTAG   79 (644)
T ss_dssp             TTTHHHHHHHHT--CSCHHHHHHHHHHHHHHHTSTTHHHHHTTCHHHHHHHHHHHHSCCC-----------HHHHHHHHH
T ss_pred             hchHHHHHHHHc--CCCHHHHHHHHHHHHHHHCCChhHHHHHhccChHHHHHHHHhcCCC-----------HHHHHHHHH
Confidence            345666777663  467889999999999999987777777765 899999999986532           289999999


Q ss_pred             HHHHhcCChhhHHHHHhcCcHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhhcC
Q 015851          139 ALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEF  218 (399)
Q Consensus       139 ~L~~l~~~~~~~~~i~~~~~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~  218 (399)
                      +|.+++.+++++..+.+.|+++.|+.+|.+.+.        .++..++++|.+++...+..+..+...|+++.|+.+|.+
T Consensus        80 ~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~--------~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~lL~~  151 (644)
T 2z6h_A           80 TLHNLSHHREGLLAIFKSGGIPALVKMLGSPVD--------SVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNK  151 (644)
T ss_dssp             HHHHHTTSHHHHHHHHTTTHHHHHHHHTTCSSH--------HHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGC
T ss_pred             HHHHHhcChhhHHHHHHcCCHHHHHHHHhCCCH--------HHHHHHHHHHHHHHhCcchhHHHHHHCCChHHHHHHHCc
Confidence            999999888899999999999999999998754        899999999999998777777778889999999999999


Q ss_pred             CCHHHHHHHHHHHHHhhcCChhhHHHHHhcCCHHHHHHhhcCC-CHHHHHHHHHHHHHhhcCChhHHHHHHHCCCcHHHH
Q 015851          219 TDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSE-DSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVI  297 (399)
Q Consensus       219 ~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~L~~ll~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~  297 (399)
                      +++.++..++.+|.+++.++++++..+.+.|+++.|+.++++. .+.+++.++.+|++++. ++..+..+++.|+++.|+
T Consensus       152 ~~~~~~~~a~~~L~~La~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~-~~~~~~~l~~~g~l~~L~  230 (644)
T 2z6h_A          152 TNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV-CSSNKPAIVEAGGMQALG  230 (644)
T ss_dssp             CCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTT-CTTHHHHHHHTTHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHhcCcHHHHHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhc-CcccHHHHHHCCCHHHHH
Confidence            9999999999999999987889999999999999999999875 46788999999999996 467789999999999999


Q ss_pred             HhhcCCChHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhccCCC--------Ccc
Q 015851          298 GLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQVITV--------SVL  369 (399)
Q Consensus       298 ~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~--------~~~  369 (399)
                      .++.+++..++..++++|.|++...+..   ....++++.|++++.+++++++..|+++|.+|+...+.        +.+
T Consensus       231 ~ll~~~~~~~~~~a~~~L~nL~~~~~~~---~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~~~~~~~~v~~~g~v  307 (644)
T 2z6h_A          231 LHLTDPSQRLVQNCLWTLRNLSDAATKQ---EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGI  307 (644)
T ss_dssp             TTTTCSCHHHHHHHHHHHHHHGGGCTTC---CSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHH
T ss_pred             HHHhcCCHHHHHHHHHHHHHHhhcchhh---hhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCH
Confidence            9999999999999999999998654321   11237899999999999999999999999999986532        345


Q ss_pred             hhHHHHHhh
Q 015851          370 PAILIFIII  378 (399)
Q Consensus       370 ~~~~~~~~~  378 (399)
                      +.++..+..
T Consensus       308 ~~Lv~lL~~  316 (644)
T 2z6h_A          308 EALVRTVLR  316 (644)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHc
Confidence            665555543

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}

Probab=99.95  E-value=2.1e-25  Score=222.04  Aligned_cols=296  Identities=21%  Similarity=0.255  Sum_probs=247.3

Q ss_pred             hhHHHHhhhhhcchhhhHHHHHHHHHHHHHHcCChhHHHHHHhCCChHHHHhcccCCCCcccccCCCcchHHHHHHHHHH
Q 015851           60 SAQVNVLNTTFSWLEADRAAAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFA  139 (399)
Q Consensus        60 ~~~~~~L~~~l~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~~~~~a~~~  139 (399)
                      .+.++.|.+.+.. ++++.++..|+.+|.+++.+++++..+.+.|+++.|+++|.+++.            .++..|+++
T Consensus        55 ~~~i~~Lv~~L~~-~~~~~~~~~A~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~------------~v~~~A~~a  121 (644)
T 2z6h_A           55 PQMVSAIVRTMQN-TNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVD------------SVLFYAITT  121 (644)
T ss_dssp             HHHHHHHHHHHHS-CCCHHHHHHHHHHHHHHTTSHHHHHHHHTTTHHHHHHHHTTCSSH------------HHHHHHHHH
T ss_pred             cChHHHHHHHHhc-CCCHHHHHHHHHHHHHHhcChhhHHHHHHcCCHHHHHHHHhCCCH------------HHHHHHHHH
Confidence            4667777776642 246788999999999999998899999999999999999988655            899999999


Q ss_pred             HHHhc-CChhhHHHHHhcCcHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhhcC
Q 015851          140 LGLLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEF  218 (399)
Q Consensus       140 L~~l~-~~~~~~~~i~~~~~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~  218 (399)
                      |.+++ ..+..+..+.+.|+++.|+.+|.+.+.        .++..++.+|.+++..++..+..+...|+++.|+.++.+
T Consensus       122 L~nL~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~--------~~~~~a~~~L~~La~~~~~~~~~i~~~g~v~~Lv~lL~~  193 (644)
T 2z6h_A          122 LHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNV--------KFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRT  193 (644)
T ss_dssp             HHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCH--------HHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTT
T ss_pred             HHHHHhCcchhHHHHHHCCChHHHHHHHCcCCH--------HHHHHHHHHHHHHHhcCcHHHHHHHHcCChHHHHHHHHc
Confidence            99999 557788888899999999999998754        788888899999998788888888999999999999988


Q ss_pred             CC-HHHHHHHHHHHHHhhcCChhhHHHHHhcCCHHHHHHhh---------------------------------------
Q 015851          219 TD-TKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILML---------------------------------------  258 (399)
Q Consensus       219 ~~-~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~L~~ll---------------------------------------  258 (399)
                      .+ ..++..++.+|++|+. .+.++..+++.|+++.|+.++                                       
T Consensus       194 ~~~~~~~~~a~~~L~nLs~-~~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~i~~Lv~lL  272 (644)
T 2z6h_A          194 YTYEKLLWTTSRVLKVLSV-CSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLL  272 (644)
T ss_dssp             CCCHHHHHHHHHHHHHHTT-CTTHHHHHHHTTHHHHHHTTTTCSCHHHHHHHHHHHHHHGGGCTTCCSCHHHHHHHHHHT
T ss_pred             CChHHHHHHHHHHHHHHhc-CcccHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcchhhhhhhhHHHHHHHHH
Confidence            65 6788999999999997 678888888888777665544                                       


Q ss_pred             cCCCHHHHHHHHHHHHHhhcCChhHHHHHHHCCCcHHHHHhhcCC--ChHHHHHHHHHHHHhhccCh---hhHHHHHhcC
Q 015851          259 RSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSC--CSESQREAALLLGQFAATDS---DCKVHIVQRG  333 (399)
Q Consensus       259 ~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~--~~~v~~~a~~~L~~l~~~~~---~~~~~l~~~g  333 (399)
                      .+++++++..|+++|++|+..++..+..+.+.|+++.|+.+|.+.  .+.++..|+++|+|++...+   ..+..+.+.|
T Consensus       273 ~~~d~~v~~~a~~aL~~L~~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~~~v~~~a~~aL~nL~~~~~~~~~~q~~v~~~~  352 (644)
T 2z6h_A          273 GSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHY  352 (644)
T ss_dssp             TCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTT
T ss_pred             cCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHHccCCcHHHHHHHHHHHHHHhcCCchHHHHHHHHHHcc
Confidence            446677888888888888877677788899999999999999863  37999999999999986544   2455688899


Q ss_pred             CHHHHHHhhCCCC-HHHHHHHHHHHHHhhccCCC-------CcchhHHHHHh
Q 015851          334 AVRPLIEMLQSPD-VQLREMSAFALGRLAQVITV-------SVLPAILIFII  377 (399)
Q Consensus       334 ~v~~L~~ll~~~~-~~v~~~a~~~L~~l~~~~~~-------~~~~~~~~~~~  377 (399)
                      +++.|++++.+++ +.+++.|+++|+|++....+       +.+|.++..+.
T Consensus       353 ~l~~L~~lL~~~~~~~v~~~a~~~L~nLa~~~~~~~~i~~~~~i~~Lv~lL~  404 (644)
T 2z6h_A          353 GLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLV  404 (644)
T ss_dssp             HHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGGGHHHHHHTTHHHHHHHHHH
T ss_pred             ChHHHHHHhCccCchHHHHHHHHHHHHHccCHHHHHHHHHcCCHHHHHHHHh
Confidence            9999999998764 79999999999999986653       35566555553

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A

Probab=99.95  E-value=1.5e-25  Score=191.31  Aligned_cols=201  Identities=23%  Similarity=0.331  Sum_probs=186.3

Q ss_pred             hcCcHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHh
Q 015851          155 DNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTL  234 (399)
Q Consensus       155 ~~~~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L  234 (399)
                      ..+..+.|..+|.+.+.        +++..++++|.+++..++..+..+...|+++.|+.+|.++++.++..|+++|+++
T Consensus        10 ~~~~~~~l~~LL~s~~~--------~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l   81 (210)
T 4db6_A           10 HGSELPQMVQQLNSPDQ--------QELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNI   81 (210)
T ss_dssp             ---CHHHHHHHTTCSCH--------HHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred             ccchhHHHHHHhcCCCH--------HHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence            35688999999987766        8999999999999988888888899999999999999999999999999999999


Q ss_pred             hcCChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHHCCCcHHHHHhhcCCChHHHHHHHHH
Q 015851          235 AFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALL  314 (399)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~  314 (399)
                      +.++++.+..+.+.|+++.|+.+|.++++.++..|+++|+|++.+++.....+.+.|+++.|+.++.++++.++..|+++
T Consensus        82 ~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~a  161 (210)
T 4db6_A           82 ASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWA  161 (210)
T ss_dssp             TTSCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHH
T ss_pred             hcCCcHHHHHHHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHH
Confidence            98788999999999999999999999999999999999999998878888889999999999999999999999999999


Q ss_pred             HHHhhccChhhHHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhcc
Q 015851          315 LGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQV  363 (399)
Q Consensus       315 L~~l~~~~~~~~~~l~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~  363 (399)
                      |+|++..+++.+..+.+.|+++.|++++.++++.+++.|+++|.+|+.+
T Consensus       162 L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~  210 (210)
T 4db6_A          162 LSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQSH  210 (210)
T ss_dssp             HHHHHTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHCC-
T ss_pred             HHHHHcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHhcC
Confidence            9999987788899999999999999999999999999999999999853

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}

Probab=99.94  E-value=7.7e-25  Score=221.52  Aligned_cols=294  Identities=22%  Similarity=0.288  Sum_probs=251.8

Q ss_pred             hhHHHHhhhhhcchhhhHHHHHHHHHHHHHHcCChhHHHHHHhC-CChHHHHhcccCCCCcccccCCCcchHHHHHHHHH
Q 015851           60 SAQVNVLNTTFSWLEADRAAAKRATHVLAELAKNEEVVNWIVEG-GAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAF  138 (399)
Q Consensus        60 ~~~~~~L~~~l~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~-g~l~~L~~lL~~~~~~~~~~~~~~~~~~~~~~a~~  138 (399)
                      .+.++.|..++.  ++++.+|..|+.+|.+++.+...+..+... |+++.|+++|.+...           ++++..|++
T Consensus       149 ~g~ip~Lv~lL~--~~d~~vr~~A~~~L~~L~~~~~~~~~i~~~~~~i~~Lv~~L~~~~d-----------~~vr~~Aa~  215 (780)
T 2z6g_A          149 TRAIPELTKLLN--DEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTND-----------VETARCTSG  215 (780)
T ss_dssp             HHHHHHHHHHHH--CSCHHHHHHHHHHHHHHHTSHHHHHHHTTCHHHHHHHHHHHHHCCC-----------HHHHHHHHH
T ss_pred             hCCHHHHHHHHC--CCCHHHHHHHHHHHHHHhCCChhHHHHHhccChHHHHHHHHcCCCC-----------HHHHHHHHH
Confidence            566777777774  567889999999999999987777777755 899999999986522           289999999


Q ss_pred             HHHHhcCChhhHHHHHhcCcHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhhcC
Q 015851          139 ALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEF  218 (399)
Q Consensus       139 ~L~~l~~~~~~~~~i~~~~~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~  218 (399)
                      +|.+++..++++..+.+.|+++.|+.+|++.+.        .++..++++|.+|+...+..+..+...|+++.|+.+|.+
T Consensus       216 aL~~Ls~~~~~~~~i~~~g~I~~Lv~lL~~~~~--------~v~~~A~~aL~nLa~~~~~~~~~v~~~g~v~~Lv~lL~~  287 (780)
T 2z6g_A          216 TLHNLSHHREGLLAIFKSGGIPALVNMLGSPVD--------SVLFHAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNK  287 (780)
T ss_dssp             HHHHHHTSHHHHHHHHHTTHHHHHHHHTTCSCH--------HHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGC
T ss_pred             HHHHHhCCchhHHHHHHcCCHHHHHHHHcCCCH--------HHHHHHHHHHHHHhCCChhhHHHHHHcCCHHHHHHHHhc
Confidence            999999888889999999999999999998754        899999999999998877888878889999999999999


Q ss_pred             CCHHHHHHHHHHHHHhhcCChhhHHHHHhcCCHHHHHHhhcCCC-HHHHHHHHHHHHHhhcCChhHHHHHHHCCCcHHHH
Q 015851          219 TDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSED-SAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVI  297 (399)
Q Consensus       219 ~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~L~~ll~~~~-~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~  297 (399)
                      ++..++..++.+|.+++..+++.+..+.+.|+++.|+.++++.+ ...+..++.+|.+++.. +..+..+++.|+++.|+
T Consensus       288 ~~~~v~~~a~~aL~~La~~~~e~~~~i~~~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~-~~~~~~i~~~g~l~~Ll  366 (780)
T 2z6g_A          288 TNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVC-SSNKPAIVEAGGMQALG  366 (780)
T ss_dssp             CCHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTS-TTHHHHHHHTTHHHHHG
T ss_pred             CCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcC-hHHHHHHHHhchHHHHH
Confidence            99999999999999999878899999999999999999998765 45677899999999964 66788899999999999


Q ss_pred             HhhcCCChHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhccCC--------CCcc
Q 015851          298 GLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQVIT--------VSVL  369 (399)
Q Consensus       298 ~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~--------~~~~  369 (399)
                      .++.+.+..++..++++|.+++......   ....++++.|++++.++++.++..|+++|.+|+...+        .+.+
T Consensus       367 ~lL~~~~~~~~~~a~~~L~~L~~~~~~~---~~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~L~~~~~~~~~~i~~~g~i  443 (780)
T 2z6g_A          367 LHLTDPSQRLVQNCLWTLRNLSDAATKQ---EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGI  443 (780)
T ss_dssp             GGTTCSCHHHHHHHHHHHHHHHTTCTTC---SCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTHH
T ss_pred             HHHcCCchHHHHHHHHHHHHHhccchhh---hhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCH
Confidence            9999999999999999999999654321   1124679999999999999999999999999998754        2356


Q ss_pred             hhHHHHHhh
Q 015851          370 PAILIFIII  378 (399)
Q Consensus       370 ~~~~~~~~~  378 (399)
                      +.++..+..
T Consensus       444 ~~Lv~lL~~  452 (780)
T 2z6g_A          444 EALVRTVLR  452 (780)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHc
Confidence            666666544

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A

Probab=99.94  E-value=7.2e-25  Score=187.02  Aligned_cols=200  Identities=28%  Similarity=0.381  Sum_probs=184.5

Q ss_pred             HhCCChHHHHhcccCCCCcccccCCCcchHHHHHHHHHHHHHhc-CChhhHHHHHhcCcHHHHHHHHhccccCccccccH
Q 015851          101 VEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVN  179 (399)
Q Consensus       101 ~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~~~~~a~~~L~~l~-~~~~~~~~i~~~~~i~~L~~~L~~~~~~~~~~~~~  179 (399)
                      ...|..+.|..+|++++.            +++..|+++|.+++ .+++.+..+.+.|+++.|+++|.+.+.        
T Consensus         9 ~~~~~~~~l~~LL~s~~~------------~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~--------   68 (210)
T 4db6_A            9 HHGSELPQMVQQLNSPDQ------------QELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNE--------   68 (210)
T ss_dssp             ----CHHHHHHHTTCSCH------------HHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCH--------
T ss_pred             cccchhHHHHHHhcCCCH------------HHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCH--------
Confidence            456889999999998776            89999999999999 889999999999999999999998755        


Q ss_pred             HHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhhHHHHHhcCCHHHHHHhhc
Q 015851          180 SVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLR  259 (399)
Q Consensus       180 ~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~L~~ll~  259 (399)
                      +++..++++|++++..++..+..+...|+++.|+.+|.++++.++..|+++|+|++.++++....+.+.|+++.|+.++.
T Consensus        69 ~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~  148 (210)
T 4db6_A           69 QILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLS  148 (210)
T ss_dssp             HHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHc
Confidence            89999999999999888888888999999999999999999999999999999999878888888999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHhhcCChhHHHHHHHCCCcHHHHHhhcCCChHHHHHHHHHHHHhhc
Q 015851          260 SEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAA  320 (399)
Q Consensus       260 ~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~  320 (399)
                      +++++++..|+++|+|++..++..+..+.+.|+++.|+.++.++++.+++.|+++|.+++.
T Consensus       149 ~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~  209 (210)
T 4db6_A          149 SPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS  209 (210)
T ss_dssp             CSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHCC
T ss_pred             CCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHhc
Confidence            9999999999999999998878888899999999999999999999999999999999974

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}

Probab=99.93  E-value=1.1e-24  Score=220.51  Aligned_cols=281  Identities=22%  Similarity=0.244  Sum_probs=243.3

Q ss_pred             hhHHHHhhhhhcchhhhHHHHHHHHHHHHHHcCChhHHHHHHhCCChHHHHhcccCCCCcccccCCCcchHHHHHHHHHH
Q 015851           60 SAQVNVLNTTFSWLEADRAAAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFA  139 (399)
Q Consensus        60 ~~~~~~L~~~l~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~~~~~a~~~  139 (399)
                      ++.++.|...+.. +++..+|..|+++|.+++.+++++..+.+.|+++.|+.+|.+.+.            .++..|+++
T Consensus       191 ~~~i~~Lv~~L~~-~~d~~vr~~Aa~aL~~Ls~~~~~~~~i~~~g~I~~Lv~lL~~~~~------------~v~~~A~~a  257 (780)
T 2z6g_A          191 PQMVSAIVRTMQN-TNDVETARCTSGTLHNLSHHREGLLAIFKSGGIPALVNMLGSPVD------------SVLFHAITT  257 (780)
T ss_dssp             HHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHTTCSCH------------HHHHHHHHH
T ss_pred             cChHHHHHHHHcC-CCCHHHHHHHHHHHHHHhCCchhHHHHHHcCCHHHHHHHHcCCCH------------HHHHHHHHH
Confidence            4667777777642 237889999999999999998888899999999999999988754            899999999


Q ss_pred             HHHhc-CChhhHHHHHhcCcHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhhcC
Q 015851          140 LGLLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEF  218 (399)
Q Consensus       140 L~~l~-~~~~~~~~i~~~~~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~  218 (399)
                      |.+++ ..+..+..+.+.|+++.|+.+|.+.+.        .++..++.+|.+++..++..+..+...++++.|+.++++
T Consensus       258 L~nLa~~~~~~~~~v~~~g~v~~Lv~lL~~~~~--------~v~~~a~~aL~~La~~~~e~~~~i~~~~~i~~Lv~lL~~  329 (780)
T 2z6g_A          258 LHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNV--------KFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRT  329 (780)
T ss_dssp             HHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCH--------HHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHHTT
T ss_pred             HHHHhCCChhhHHHHHHcCCHHHHHHHHhcCCH--------HHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhc
Confidence            99999 667888888899999999999997554        788999999999998788888888888999999999998


Q ss_pred             CC-HHHHHHHHHHHHHhhcCChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHHCCCcHHHH
Q 015851          219 TD-TKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVI  297 (399)
Q Consensus       219 ~~-~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~  297 (399)
                      .+ ...+..++.+|.+|+. .+.++..+++.|+++.|+.++.+.++.++..++++|.+++......   ....++++.|+
T Consensus       330 ~~~~~~~~~a~~aL~~Ls~-~~~~~~~i~~~g~l~~Ll~lL~~~~~~~~~~a~~~L~~L~~~~~~~---~~~~~~i~~Lv  405 (780)
T 2z6g_A          330 YTYEKLLWTTSRVLKVLSV-CSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQ---EGMEGLLGTLV  405 (780)
T ss_dssp             CCCHHHHHHHHHHHHHHHT-STTHHHHHHHTTHHHHHGGGTTCSCHHHHHHHHHHHHHHHTTCTTC---SCCHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHhhc-ChHHHHHHHHhchHHHHHHHHcCCchHHHHHHHHHHHHHhccchhh---hhhhhHHHHHH
Confidence            76 4567788999999997 6788899999999999999999999999999999999999654321   11235789999


Q ss_pred             HhhcCCChHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHhhCC-C-CHHHHHHHHHHHHHhhccCC
Q 015851          298 GLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQS-P-DVQLREMSAFALGRLAQVIT  365 (399)
Q Consensus       298 ~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~v~~L~~ll~~-~-~~~v~~~a~~~L~~l~~~~~  365 (399)
                      .+|.+.++.++..|+++|++++..+++.+..+.+.|+++.|++++.+ + ...++..|+++|++|+...+
T Consensus       406 ~lL~~~d~~vr~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL~~~~~  475 (780)
T 2z6g_A          406 QLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQ  475 (780)
T ss_dssp             HHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSST
T ss_pred             HHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCc
Confidence            99999999999999999999998777888999999999999999975 3 34899999999999987543

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*

Probab=99.93  E-value=5.9e-24  Score=189.03  Aligned_cols=191  Identities=23%  Similarity=0.259  Sum_probs=174.0

Q ss_pred             hhhHHHHHHHHHHHHHHcCChhHHHHHHhCCChHHHHh-cccCCCCcccccCCCcchHHHHHHHHHHHHHhc-CChhhHH
Q 015851           74 EADRAAAKRATHVLAELAKNEEVVNWIVEGGAVPALVK-HLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA-VKPEHQQ  151 (399)
Q Consensus        74 ~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~l~~L~~-lL~~~~~~~~~~~~~~~~~~~~~~a~~~L~~l~-~~~~~~~  151 (399)
                      +.+.+.+..|+..|.+++.+.++...+.+.|++++|+. +|.+++.            ++|..|+|+|++++ .++..++
T Consensus        51 ~~~~e~k~~Al~~L~~lv~~~dna~~~~~~G~l~~Lv~~lL~s~~~------------~vr~~Aa~~Lg~ia~~n~~~~~  118 (296)
T 1xqr_A           51 AADQQEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGAA------------GLRWRAAQLIGTCSQNVAAIQE  118 (296)
T ss_dssp             HHHHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHTTTTCSSH------------HHHHHHHHHHHHHHTTCHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHhChhhHHHHHHcCCHHHHHHHHHcCCCH------------HHHHHHHHHHHHHHhCCHHHHH
Confidence            45567899999999999999888889999999999999 9987665            89999999999999 7889999


Q ss_pred             HHHhcCcHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHH
Q 015851          152 LIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGAL  231 (399)
Q Consensus       152 ~i~~~~~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L  231 (399)
                      .+++.|+++.|+.+|++..+.       .+++.++|+|+|++.+++.....+...|+++.|+.+|.++++.++..|+++|
T Consensus       119 ~vv~~g~l~~Ll~LL~~~~~~-------~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aL  191 (296)
T 1xqr_A          119 QVLGLGALRKLLRLLDRDACD-------TVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLL  191 (296)
T ss_dssp             HHHHTTHHHHHHHHHHHCSCH-------HHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHH
T ss_pred             HHHHCCCHHHHHHHHccCCCH-------HHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHH
Confidence            999999999999999864332       8999999999999988887777788899999999999999999999999999


Q ss_pred             HHhhcCChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhH
Q 015851          232 RTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNI  283 (399)
Q Consensus       232 ~~L~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~  283 (399)
                      .+|+.++++.+..+++.|+++.|+.+|.++++.++..|+++|++|+...+..
T Consensus       192 s~L~~~~~~~~~~vv~~g~i~~Lv~LL~~~d~~v~~~al~aL~~l~~~~~~~  243 (296)
T 1xqr_A          192 QNLLVGHPEHKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTDFPQG  243 (296)
T ss_dssp             HHHHHHCGGGHHHHHHTTHHHHHHHHHTSCCSTHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHhCChHHHHHHHHcCCHHHHHHHHcCCChhHHHHHHHHHHHHHhCChhH
Confidence            9999988889999999999999999999999999999999999999764443

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*

Probab=99.92  E-value=2.1e-23  Score=185.41  Aligned_cols=224  Identities=17%  Similarity=0.154  Sum_probs=190.7

Q ss_pred             HHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHH-HHhccccCccccccHHHHHHHHHHHHHHhhcCchhHHHHHhcCCh
Q 015851          131 EVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVN-LLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGI  209 (399)
Q Consensus       131 ~~~~~a~~~L~~l~~~~~~~~~i~~~~~i~~L~~-~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i  209 (399)
                      +-+..|+..|.+++.+.++...+...|+++.|+. +|.+.+.        +++..++|+|++++.+++..+..+...|++
T Consensus        55 e~k~~Al~~L~~lv~~~dna~~~~~~G~l~~Lv~~lL~s~~~--------~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l  126 (296)
T 1xqr_A           55 QEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGAA--------GLRWRAAQLIGTCSQNVAAIQEQVLGLGAL  126 (296)
T ss_dssp             HHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHTTTTCSSH--------HHHHHHHHHHHHHHTTCHHHHHHHHHTTHH
T ss_pred             HHHHHHHHHHHHHHhChhhHHHHHHcCCHHHHHHHHHcCCCH--------HHHHHHHHHHHHHHhCCHHHHHHHHHCCCH
Confidence            5788899999999998899999999999999999 9987655        899999999999999899999999999999


Q ss_pred             HHHHHhhcC-CCHHHHHHHHHHHHHhhcCChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHH
Q 015851          210 PPLVELLEF-TDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVL  288 (399)
Q Consensus       210 ~~L~~ll~~-~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~  288 (399)
                      +.|+.+|++ +++.++..|+++|+||+.+++.....+.+.|+++.|+.+|.+++..++..|+|+|++++.++++.+..++
T Consensus       127 ~~Ll~LL~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~~~~~~~~vv  206 (296)
T 1xqr_A          127 RKLLRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLC  206 (296)
T ss_dssp             HHHHHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHH
T ss_pred             HHHHHHHccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCChHHHHHHH
Confidence            999999996 4789999999999999988888888899999999999999999999999999999999988888899999


Q ss_pred             HCCCcHHHHHhhcCCChHHHHHHHHHHHHhhccChhhHHHHHhc--CCHHHH---HHhhCCC--CHHHHHHHHHHHHHhh
Q 015851          289 AAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQR--GAVRPL---IEMLQSP--DVQLREMSAFALGRLA  361 (399)
Q Consensus       289 ~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~--g~v~~L---~~ll~~~--~~~v~~~a~~~L~~l~  361 (399)
                      +.|+++.|+.+|.++++.+++.|+.+|+|++...+.........  .+...|   ++-++..  ..++.+.+..++.++-
T Consensus       207 ~~g~i~~Lv~LL~~~d~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~l~~lL~~~~~~lq~~e~~~e~~~~~~~il~~~f  286 (296)
T 1xqr_A          207 SMGMVQQLVALVRTEHSPFHEHVLGALCSLVTDFPQGVRECREPELGLEELLRHRCQLLQQHEEYQEELEFCEKLLQTCF  286 (296)
T ss_dssp             HTTHHHHHHHHHTSCCSTHHHHHHHHHHHHHTTCHHHHHHHHCGGGCHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHC
T ss_pred             HcCCHHHHHHHHcCCChhHHHHHHHHHHHHHhCChhHHHHHhccHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHc
Confidence            99999999999999999999999999999997644443333221  122222   2233322  4577777777777766


Q ss_pred             c
Q 015851          362 Q  362 (399)
Q Consensus       362 ~  362 (399)
                      .
T Consensus       287 ~  287 (296)
T 1xqr_A          287 S  287 (296)
T ss_dssp             C
T ss_pred             C
Confidence            4

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}

Probab=99.90  E-value=7.4e-23  Score=174.24  Aligned_cols=198  Identities=25%  Similarity=0.343  Sum_probs=173.1

Q ss_pred             cHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhhcC
Q 015851          158 ALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFK  237 (399)
Q Consensus       158 ~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~  237 (399)
                      .++.++++|.+.+.+.      +++..++++|.+++..++..+..+...|+||.|+.+|+++++++++.|+++|.||+.+
T Consensus         9 ~i~~lV~lL~s~~~~~------~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~   82 (233)
T 3tt9_A            9 TLERAVSMLEADHMLP------SRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFE   82 (233)
T ss_dssp             CHHHHHHTCCSSCCCH------HHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTT
T ss_pred             cHHHHHHHhCCCCchH------HHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhC
Confidence            5899999998876532      6778899999999988888888899999999999999999999999999999999987


Q ss_pred             ChhhHHHHHhcCCHHHHHHhhc-CCCHHHHHHHHHHHHHhhcCChhHHHHHHHCCCcHHHHHhhc---------------
Q 015851          238 NDENKNQIVECNALPTLILMLR-SEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLS---------------  301 (399)
Q Consensus       238 ~~~~~~~~~~~~~~~~L~~ll~-~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~---------------  301 (399)
                      +++++..+.+.|++|.|+++|. +++.++++.|+.+|+||+.. +..+..+.+ ++++.|+.++.               
T Consensus        83 ~~~nk~~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~-~~~k~~i~~-~~i~~Lv~ll~~p~sG~~~~~~~~~~  160 (233)
T 3tt9_A           83 DNDNKLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSN-DKLKNLMIT-EALLTLTENIIIPFSGWPEGDYPKAN  160 (233)
T ss_dssp             CHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTS-GGGHHHHHH-HHHHHHCCCCCHHHHCCCGGGCCCCC
T ss_pred             CHHHHHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcC-hhhHHHHHh-ccHHHHHHHHhccccCCccccccccc
Confidence            8999999999999999999998 57899999999999999864 666777776 46899988763               


Q ss_pred             -CCChHHHHHHHHHHHHhhccChhhHHHHHhc-CCHHHHHHhhCC------CCHHHHHHHHHHHHHhhcc
Q 015851          302 -SCCSESQREAALLLGQFAATDSDCKVHIVQR-GAVRPLIEMLQS------PDVQLREMSAFALGRLAQV  363 (399)
Q Consensus       302 -~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~-g~v~~L~~ll~~------~~~~v~~~a~~~L~~l~~~  363 (399)
                       ..++.++.+|+++|.|++..+++.|+.+.+. |+++.|+.+++.      .+...+++|+.+|+||+..
T Consensus       161 ~~~~~~v~~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs~~  230 (233)
T 3tt9_A          161 GLLDFDIFYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLSYQ  230 (233)
T ss_dssp             TTCCHHHHHHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCCC
T ss_pred             ccchHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHhh
Confidence             1256899999999999998778999999874 778999999963      3668999999999999865

>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}

Probab=99.90  E-value=9.4e-23  Score=198.47  Aligned_cols=288  Identities=17%  Similarity=0.173  Sum_probs=229.1

Q ss_pred             HhhhhhhHHHHhhhhhcchhhhHHHHHHHHHHHHHHcCC-hh--------------------------------------
Q 015851           55 LLSEVSAQVNVLNTTFSWLEADRAAAKRATHVLAELAKN-EE--------------------------------------   95 (399)
Q Consensus        55 ~~~~~~~~~~~L~~~l~~~~~~~~~~~~a~~~L~~l~~~-~~--------------------------------------   95 (399)
                      .......+++.|..++.. .++..+...++.+|.|++.+ +.                                      
T Consensus       370 ~L~~d~~~L~~Lv~llk~-~~d~s~~Ygal~IL~NLt~~~~~~~~e~~~l~~Lk~~A~~~~p~~~~~d~~~~~~~~v~~~  448 (778)
T 3opb_A          370 MIRSNESFTEILLTMIKS-QKMTHCLYGLLVIMANLSTLPEEXXXXXXXXXXXXXXXXXXXPAADKVGAEKAAKEDILLF  448 (778)
T ss_dssp             HHHHCHHHHHHHHHHHTT-TCCTTHHHHHHHHHHHTTCCCCCCCCCCC------------------CCTHHHHHHHHHHH
T ss_pred             HHHhCHHHHHHHHHHHhC-CCCchHHHHHHHHHHHhcCCCcccchhhhhhhhhhhhccccCcccCcccccccchHHHHHH
Confidence            445566777777777743 23456788999999999873 20                                      


Q ss_pred             HHHHHHhCCChHHHHhcccCCCCcccccCCCcchHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHHHhccccCccc
Q 015851           96 VVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCS  175 (399)
Q Consensus        96 ~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~~~i~~L~~~L~~~~~~~~~  175 (399)
                      ++..+.+.|+++.|+.++.+.++            .+|..++++|.+++.++++|..+++.|+++.|+.++.+...... 
T Consensus       449 ~~~~l~eaGvIp~Lv~Ll~S~s~------------~~re~A~~aL~nLS~d~~~R~~lvqqGal~~LL~lL~s~~~~~~-  515 (778)
T 3opb_A          449 NEKYILRTELISFLKREMHNLSP------------NCKQQVVRIIYNITRSKNFIPQLAQQGAVKIILEYLANKQDIGE-  515 (778)
T ss_dssp             HHHHTTTTTHHHHHHHHGGGSCH------------HHHHHHHHHHHHHHTSGGGHHHHHHTTHHHHHHHHTTCC---CC-
T ss_pred             HHHHHHHCcCHHHHHHHHcCCCH------------HHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCCcch-
Confidence            45567789999999999988765            78999999999999999999999999999999999988764311 


Q ss_pred             cccHHHHHHHHHHHHHHhhcCchhHHHHHh---cCChHHHHHhhcC-CC-H------------HHHHHHHHHHHHhhcCC
Q 015851          176 RAVNSVIRRAADAITNLAHENSSIKTRVRM---EGGIPPLVELLEF-TD-T------------KVQRAAAGALRTLAFKN  238 (399)
Q Consensus       176 ~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~---~~~i~~L~~ll~~-~~-~------------~v~~~a~~~L~~L~~~~  238 (399)
                          ..+..|+.+|.+++...... ..+..   .++++.|+.+|.. +. .            --+..|+.+|.||+..+
T Consensus       516 ----~~k~~AA~ALArLlis~np~-~~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~  590 (778)
T 3opb_A          516 ----PIRILGCRALTRMLIFTNPG-LIFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSE  590 (778)
T ss_dssp             ----HHHHHHHHHHHHHHHTSCHH-HHSSSSCSTTHHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCC
T ss_pred             ----HHHHHHHHHHHHHHhcCCHH-HHcCCCccccchHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhcCC
Confidence                48899999999999543321 11211   3889999999983 11 1            12779999999999954


Q ss_pred             ----hhhHHHHHhc-CCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHH-HHHHHCC------CcHHHHHhhcCCChH
Q 015851          239 ----DENKNQIVEC-NALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIK-KEVLAAG------ALQPVIGLLSSCCSE  306 (399)
Q Consensus       239 ----~~~~~~~~~~-~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~-~~~~~~~------~l~~L~~lL~~~~~~  306 (399)
                          ++.+..++.. |+++.|..+|.+++..++..|+++++||+.+ +..+ +.+...+      .++.|+.+++..+.+
T Consensus       591 ~n~~E~~r~~Ii~~~ga~~~L~~LL~s~n~~VrrAA~elI~NL~~~-~e~i~~k~~~~~~~~~~~rL~lLV~Ll~s~D~~  669 (778)
T 3opb_A          591 TSDGEEVCKHIVSTKVYWSTIENLMLDENVPLQRSTLELISNMMSH-PLTIAAKFFNLENPQSLRNFNILVKLLQLSDVE  669 (778)
T ss_dssp             SHHHHHHHHHHHHSHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHTS-GGGTGGGTSCCSSHHHHHHHHHHHHGGGCSCHH
T ss_pred             cccchHHHHHHHHhcCHHHHHHHHHhCCCHHHHHHHHHHHHHHhCC-cHHHHHHHHhhcCchhhccHHHHHHHHcCCCHH
Confidence                2446777885 9999999999999999999999999999964 4442 2333222      377899999999999


Q ss_pred             HHHHHHHHHHHhhccChhhHHHHHhc-CCHHHHHHhhCC--CCHHHHHHHHHHHHHhhc
Q 015851          307 SQREAALLLGQFAATDSDCKVHIVQR-GAVRPLIEMLQS--PDVQLREMSAFALGRLAQ  362 (399)
Q Consensus       307 v~~~a~~~L~~l~~~~~~~~~~l~~~-g~v~~L~~ll~~--~~~~v~~~a~~~L~~l~~  362 (399)
                      ++.+|+|+|+|++..++...+.+.+. ++++.++.++++  +++++++.++.++.|++.
T Consensus       670 ~r~AAagALAnLts~~~~ia~~ll~~~~gi~~Ll~lL~~~~~~~~l~~R~~~~l~NL~~  728 (778)
T 3opb_A          670 SQRAVAAIFANIATTIPLIAKELLTKKELIENAIQVFADQIDDIELRQRLLMLFFGLFE  728 (778)
T ss_dssp             HHHHHHHHHHHHHHHCHHHHHHHTTCHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHhcCCChHHHHHHHHccccHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Confidence            99999999999987677777778775 899999999987  899999999999999997

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}

Probab=99.89  E-value=2e-22  Score=171.51  Aligned_cols=196  Identities=21%  Similarity=0.271  Sum_probs=171.1

Q ss_pred             ChHHHHhcccCCCCcccccCCCcchHHHHHHHHHHHHHhc-CChhhHHHHHhcCcHHHHHHHHhccccCccccccHHHHH
Q 015851          105 AVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIR  183 (399)
Q Consensus       105 ~l~~L~~lL~~~~~~~~~~~~~~~~~~~~~~a~~~L~~l~-~~~~~~~~i~~~~~i~~L~~~L~~~~~~~~~~~~~~~~~  183 (399)
                      .++.++++|.+++.          +++++..|+++|.+++ .+++++..+.+.|++|.|+++|.+.+.        ++++
T Consensus         9 ~i~~lV~lL~s~~~----------~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~--------~vq~   70 (233)
T 3tt9_A            9 TLERAVSMLEADHM----------LPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNE--------DVQR   70 (233)
T ss_dssp             CHHHHHHTCCSSCC----------CHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCH--------HHHH
T ss_pred             cHHHHHHHhCCCCc----------hHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCH--------HHHH
Confidence            58899999998765          2267889999999999 789999999999999999999998665        9999


Q ss_pred             HHHHHHHHHhhcCchhHHHHHhcCChHHHHHhhc-CCCHHHHHHHHHHHHHhhcCChhhHHHHHhcCCHHHHHHhhc---
Q 015851          184 RAADAITNLAHENSSIKTRVRMEGGIPPLVELLE-FTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLR---  259 (399)
Q Consensus       184 ~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~-~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~L~~ll~---  259 (399)
                      .++|+|.||+..++..+..+.+.|+||.|+.+|. +++.++++.|+.+|+||+. .+.++..+.+. ++|.|+.++.   
T Consensus        71 ~Aa~aL~nLa~~~~~nk~~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~-~~~~k~~i~~~-~i~~Lv~ll~~p~  148 (233)
T 3tt9_A           71 AVCGALRNLVFEDNDNKLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSS-NDKLKNLMITE-ALLTLTENIIIPF  148 (233)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHT-SGGGHHHHHHH-HHHHHCCCCCHHH
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHc-ChhhHHHHHhc-cHHHHHHHHhccc
Confidence            9999999999878888999999999999999998 5789999999999999998 68888888875 6899988653   


Q ss_pred             -------------CCCHHHHHHHHHHHHHhhcCChhHHHHHHHC-CCcHHHHHhhcC------CChHHHHHHHHHHHHhh
Q 015851          260 -------------SEDSAIHYEAVGVIGNLVHSSPNIKKEVLAA-GALQPVIGLLSS------CCSESQREAALLLGQFA  319 (399)
Q Consensus       260 -------------~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~-~~l~~L~~lL~~------~~~~v~~~a~~~L~~l~  319 (399)
                                   ..+++++.+|.++|.|++..+++.++.+.+. |+++.|+.+++.      .+...+++|+.+|.||+
T Consensus       149 sG~~~~~~~~~~~~~~~~v~~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs  228 (233)
T 3tt9_A          149 SGWPEGDYPKANGLLDFDIFYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLS  228 (233)
T ss_dssp             HCCCGGGCCCCCTTCCHHHHHHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC
T ss_pred             cCCcccccccccccchHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHH
Confidence                         1367999999999999998777888999886 567999999974      25588999999999997


Q ss_pred             c
Q 015851          320 A  320 (399)
Q Consensus       320 ~  320 (399)
                      .
T Consensus       229 ~  229 (233)
T 3tt9_A          229 Y  229 (233)
T ss_dssp             C
T ss_pred             h
Confidence            4

>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}

Probab=99.89  E-value=1.2e-21  Score=190.66  Aligned_cols=281  Identities=16%  Similarity=0.172  Sum_probs=221.5

Q ss_pred             hhHHHHhhhhhcchhhhHHHHHHHHHHHHHHcCChhHHHHHHhC-CChHHHHhcccC-CCCcccccCCCcchHHHHHHHH
Q 015851           60 SAQVNVLNTTFSWLEADRAAAKRATHVLAELAKNEEVVNWIVEG-GAVPALVKHLQA-PPTSEADRNLKPFEHEVEKGSA  137 (399)
Q Consensus        60 ~~~~~~L~~~l~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~-g~l~~L~~lL~~-~~~~~~~~~~~~~~~~~~~~a~  137 (399)
                      ..+.+.+.+++...  +...+..|++.|..++.+++.+..+++. |++..|++++++ .+.            .+...++
T Consensus       333 ~~La~~~~~~L~~~--~~~~~~~AvEgLaYLSl~~~VKe~L~~d~~~L~~Lv~llk~~~d~------------s~~Ygal  398 (778)
T 3opb_A          333 KQLSEIFINAISRR--IVPKVEMSVEALAYLSLKASVKIMIRSNESFTEILLTMIKSQKMT------------HCLYGLL  398 (778)
T ss_dssp             HHHHHHHHHHTTTC--CHHHHHHHHHHHHHHTTSSHHHHHHHHCHHHHHHHHHHHTTTCCT------------THHHHHH
T ss_pred             HHHHHHHHHHHhcC--CccHHHHHHHHHHHHhCCHHHHHHHHhCHHHHHHHHHHHhCCCCc------------hHHHHHH
Confidence            34566666666432  2233899999999999999999988866 669999999986 333            5778899


Q ss_pred             HHHHHhcC-Chh--------------------------------------hHHHHHhcCcHHHHHHHHhccccCcccccc
Q 015851          138 FALGLLAV-KPE--------------------------------------HQQLIVDNGALSHLVNLLKRHMDSNCSRAV  178 (399)
Q Consensus       138 ~~L~~l~~-~~~--------------------------------------~~~~i~~~~~i~~L~~~L~~~~~~~~~~~~  178 (399)
                      .+|.|++. .+.                                      ++..+.+.|+++.|+.++.+.+.       
T Consensus       399 ~IL~NLt~~~~~~~~e~~~l~~Lk~~A~~~~p~~~~~d~~~~~~~~v~~~~~~~l~eaGvIp~Lv~Ll~S~s~-------  471 (778)
T 3opb_A          399 VIMANLSTLPEEXXXXXXXXXXXXXXXXXXXPAADKVGAEKAAKEDILLFNEKYILRTELISFLKREMHNLSP-------  471 (778)
T ss_dssp             HHHHHTTCCCCCCCCCCC------------------CCTHHHHHHHHHHHHHHHTTTTTHHHHHHHHGGGSCH-------
T ss_pred             HHHHHhcCCCcccchhhhhhhhhhhhccccCcccCcccccccchHHHHHHHHHHHHHCcCHHHHHHHHcCCCH-------
Confidence            99999983 220                                      35667889999999999988766       


Q ss_pred             HHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhhcCCCHH---HHHHHHHHHHHhhcCChhhHHHHHh---cCCHH
Q 015851          179 NSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTK---VQRAAAGALRTLAFKNDENKNQIVE---CNALP  252 (399)
Q Consensus       179 ~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~---v~~~a~~~L~~L~~~~~~~~~~~~~---~~~~~  252 (399)
                       .+++.++++|.||+ .++..+..+.+.|+++.|+.++.+.+..   .+..|+.+|.+|+.. .+....+-.   .|+++
T Consensus       472 -~~re~A~~aL~nLS-~d~~~R~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis-~np~~~f~~~~~~~aI~  548 (778)
T 3opb_A          472 -NCKQQVVRIIYNIT-RSKNFIPQLAQQGAVKIILEYLANKQDIGEPIRILGCRALTRMLIF-TNPGLIFKKYSALNAIP  548 (778)
T ss_dssp             -HHHHHHHHHHHHHH-TSGGGHHHHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHT-SCHHHHSSSSCSTTHHH
T ss_pred             -HHHHHHHHHHHHHc-CCHHHHHHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhc-CCHHHHcCCCccccchH
Confidence             89999999999999 5688899999999999999999987654   899999999999963 222222211   38899


Q ss_pred             HHHHhhcC-CCH-------------HHHHHHHHHHHHhhcCC----hhHHHHHHHC-CCcHHHHHhhcCCChHHHHHHHH
Q 015851          253 TLILMLRS-EDS-------------AIHYEAVGVIGNLVHSS----PNIKKEVLAA-GALQPVIGLLSSCCSESQREAAL  313 (399)
Q Consensus       253 ~L~~ll~~-~~~-------------~v~~~a~~~L~~l~~~~----~~~~~~~~~~-~~l~~L~~lL~~~~~~v~~~a~~  313 (399)
                      .|+.+|.. +..             --+..|+.+|.||+..+    ++.+..++.+ |+++.|..+|.+.+..++.+|++
T Consensus       549 pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL~s~n~~VrrAA~e  628 (778)
T 3opb_A          549 FLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLDENVPLQRSTLE  628 (778)
T ss_dssp             HHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHGGGCSSHHHHHHHHH
T ss_pred             HHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHHHHhCCCHHHHHHHHH
Confidence            99999983 211             12779999999999765    2446778886 99999999999999999999999


Q ss_pred             HHHHhhccChhhH-HHHHhcC------CHHHHHHhhCCCCHHHHHHHHHHHHHhhccCC
Q 015851          314 LLGQFAATDSDCK-VHIVQRG------AVRPLIEMLQSPDVQLREMSAFALGRLAQVIT  365 (399)
Q Consensus       314 ~L~~l~~~~~~~~-~~l~~~g------~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~  365 (399)
                      +++|++. +++.+ ..+.+.+      .++.|+.++.+++.++|++|+++|.|++...+
T Consensus       629 lI~NL~~-~~e~i~~k~~~~~~~~~~~rL~lLV~Ll~s~D~~~r~AAagALAnLts~~~  686 (778)
T 3opb_A          629 LISNMMS-HPLTIAAKFFNLENPQSLRNFNILVKLLQLSDVESQRAVAAIFANIATTIP  686 (778)
T ss_dssp             HHHHHHT-SGGGTGGGTSCCSSHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCH
T ss_pred             HHHHHhC-CcHHHHHHHHhhcCchhhccHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCh
Confidence            9999996 46654 3443322      37899999999999999999999999975444

>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A

Probab=99.73  E-value=1.1e-15  Score=145.24  Aligned_cols=288  Identities=16%  Similarity=0.124  Sum_probs=228.2

Q ss_pred             hhhhHHHHhhhhhcchhhhHHHHHHHHHHHHHHcC-Chh-----------------HHHHH-HhCCChHHHHhcccCCCC
Q 015851           58 EVSAQVNVLNTTFSWLEADRAAAKRATHVLAELAK-NEE-----------------VVNWI-VEGGAVPALVKHLQAPPT  118 (399)
Q Consensus        58 ~~~~~~~~L~~~l~~~~~~~~~~~~a~~~L~~l~~-~~~-----------------~~~~~-~~~g~l~~L~~lL~~~~~  118 (399)
                      .+...++.|...+....+|.++...++++|.++.. +++                 +.+.+ .+.+.++.|+.+|+..+.
T Consensus        57 Vg~~~l~~li~~L~~d~~D~e~v~~~LetL~~l~~~~~~~~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~~df  136 (651)
T 3grl_A           57 VGIQAMEHLIHVLQTDRSDSEIIGYALDTLYNIISNDEEEEVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEEFDF  136 (651)
T ss_dssp             HHHHTHHHHHHHHHSCTTCHHHHHHHHHHHHHHHCCC--------------CHHHHHHHHHHHSTHHHHHHHHHTTCCCH
T ss_pred             hhhhhHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcccccccccccchHHHHHHHHHHHcCCccHHHHHHHhcCccH
Confidence            34455666666666566788888899999988766 321                 22333 356899999999987766


Q ss_pred             cccccCCCcchHHHHHHHHHHHHHhc-CChh-hHHHHHh-cCcHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhhc
Q 015851          119 SEADRNLKPFEHEVEKGSAFALGLLA-VKPE-HQQLIVD-NGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHE  195 (399)
Q Consensus       119 ~~~~~~~~~~~~~~~~~a~~~L~~l~-~~~~-~~~~i~~-~~~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~  195 (399)
                                  .+|.+++.+|..++ ..++ .++.+.. .++++.|+.+|++..+        .++-.++..|.+|+.+
T Consensus       137 ------------~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d~rE--------~iRneallLL~~Lt~~  196 (651)
T 3grl_A          137 ------------HVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLADSRE--------VIRNDGVLLLQALTRS  196 (651)
T ss_dssp             ------------HHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGGCSSH--------HHHHHHHHHHHHHHTT
T ss_pred             ------------HHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHhCchH--------HHHHHHHHHHHHHhcC
Confidence                        78999999999999 6665 8888885 5999999999998776        7888899999999999


Q ss_pred             CchhHHHHHhcCChHHHHHhhcCCCH----HHHHHHHHHHHHhhcCChhhHHHHHhcCCHHHHHHhhcCCCH------HH
Q 015851          196 NSSIKTRVRMEGGIPPLVELLEFTDT----KVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDS------AI  265 (399)
Q Consensus       196 ~~~~~~~~~~~~~i~~L~~ll~~~~~----~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~L~~ll~~~~~------~v  265 (399)
                      ++.++..+.-.|+++.|+.++..+..    .+...++.+|.||..+++.++..+.+.|+++.|..++..+++      ..
T Consensus       197 n~~iQklVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~~FrEt~~i~~L~~LL~~~~~~~~W~~Qk  276 (651)
T 3grl_A          197 NGAIQKIVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLKNNNSNQNFFKEGSYIQRMKPWFEVGDENSGWSAQK  276 (651)
T ss_dssp             CHHHHHHHHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCGGGGGGGGCCCSCSSCCCHHH
T ss_pred             CHHHHHHHHHhccHHHHHHHHHhcCCCccchhHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHhCCCccccccHHHH
Confidence            99999988888999999999987553    789999999999999999999999999999999999975432      12


Q ss_pred             HHH---HHHHHHHhhcC------ChhHHHHHHHCCCcHHHHHhhcCC--ChHHHHHHHHHHHHhhccChhhHHHHHhcC-
Q 015851          266 HYE---AVGVIGNLVHS------SPNIKKEVLAAGALQPVIGLLSSC--CSESQREAALLLGQFAATDSDCKVHIVQRG-  333 (399)
Q Consensus       266 ~~~---a~~~L~~l~~~------~~~~~~~~~~~~~l~~L~~lL~~~--~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g-  333 (399)
                      ..+   ++.++.-++..      ...+...+.+.|+++.+++++...  +..++.+|+.+++.+..+++.++..+.... 
T Consensus       277 ~~N~~~~L~iIrlLv~~~~~~~~t~~nQ~~~~~~g~l~~Ll~ll~~~~~p~~i~~~Al~tla~~irgN~~~Q~~fa~~~v  356 (651)
T 3grl_A          277 VTNLHLMLQLVRVLVSPNNPPGATSSCQKAMFQCGLLQQLCTILMATGVPADILTETINTVSEVIRGCQVNQDYFASVNA  356 (651)
T ss_dssp             HHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHTTHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHCEE
T ss_pred             HHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHCCCHHHHHHHHccCCCCHHHHHHHHHHHHHHHhCCHHHHHHHhhccC
Confidence            333   55566666543      234567888999999999998754  568999999999999999998888887643 


Q ss_pred             --------CHHHHHHhhCC-CCHHHHHHHHHHHHHhhccCC
Q 015851          334 --------AVRPLIEMLQS-PDVQLREMSAFALGRLAQVIT  365 (399)
Q Consensus       334 --------~v~~L~~ll~~-~~~~v~~~a~~~L~~l~~~~~  365 (399)
                              ++..|+.++.+ ....+|.+|+.++..+..+.+
T Consensus       357 p~~~~~p~li~lL~~~~~~~~~~~lR~Aa~~cl~ay~~~N~  397 (651)
T 3grl_A          357 PSNPPRPAIVVLLMSMVNERQPFVLRCAVLYCFQCFLYKNQ  397 (651)
T ss_dssp             SSSSCEEHHHHHHHHHTCTTSCHHHHHHHHHHHHHHHTTCH
T ss_pred             CCCCCcChHHHHHHHHhcccccHHHHHHHHHHHHHHHhCCH
Confidence                    33344444554 568899999999999886654

>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A

Probab=99.67  E-value=1.6e-14  Score=137.34  Aligned_cols=269  Identities=15%  Similarity=0.164  Sum_probs=214.5

Q ss_pred             HHHHHHHHHHHHHHcCChhHHHHHHhCCChHHHHhcccCCCCcccccCCCcchHHHHHHHHHHHHHhc-CChh-------
Q 015851           77 RAAAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA-VKPE-------  148 (399)
Q Consensus        77 ~~~~~~a~~~L~~l~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~~~~~a~~~L~~l~-~~~~-------  148 (399)
                      .+-|..|+..|..++++  ++. .+..++++.|+..|+.+..          +.++...++.+|.++. .+++       
T Consensus        36 ~eDRR~Av~~Lk~~sk~--y~~-~Vg~~~l~~li~~L~~d~~----------D~e~v~~~LetL~~l~~~~~~~~~~~~~  102 (651)
T 3grl_A           36 LDDRRNAVRALKSLSKK--YRL-EVGIQAMEHLIHVLQTDRS----------DSEIIGYALDTLYNIISNDEEEEVEENS  102 (651)
T ss_dssp             HHHHHHHHHHHHHTTTT--TTT-HHHHHTHHHHHHHHHSCTT----------CHHHHHHHHHHHHHHHCCC---------
T ss_pred             hhHHHHHHHHHHHHHHH--hHH-HhhhhhHHHHHHHHhcccc----------cHHHHHHHHHHHHHHhCCCCcccccccc
Confidence            45677999999999875  222 2457789999999988654          3378888999998866 3221       


Q ss_pred             ----------hHHHH-HhcCcHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhhcCch-hHHHHHh-cCChHHHHHh
Q 015851          149 ----------HQQLI-VDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSS-IKTRVRM-EGGIPPLVEL  215 (399)
Q Consensus       149 ----------~~~~i-~~~~~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~-~~~~~~~-~~~i~~L~~l  215 (399)
                                +.+.+ .+.+.++.|+.+|+..+.        .++..++..|..|+...+. .++.+.. .++++.|+.+
T Consensus       103 ~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~~df--------~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~l  174 (651)
T 3grl_A          103 TRQSEDLGSQFTEIFIKQQENVTLLLSLLEEFDF--------HVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDL  174 (651)
T ss_dssp             -----CHHHHHHHHHHHSTHHHHHHHHHTTCCCH--------HHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGG
T ss_pred             cccchHHHHHHHHHHHcCCccHHHHHHHhcCccH--------HHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHH
Confidence                      22233 356789999999987655        8999999999999987776 7777774 4999999999


Q ss_pred             hcCCCHHHHHHHHHHHHHhhcCChhhHHHHHhcCCHHHHHHhhcCCC----HHHHHHHHHHHHHhhcCChhHHHHHHHCC
Q 015851          216 LEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSED----SAIHYEAVGVIGNLVHSSPNIKKEVLAAG  291 (399)
Q Consensus       216 l~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~L~~ll~~~~----~~v~~~a~~~L~~l~~~~~~~~~~~~~~~  291 (399)
                      |++..+.+|..++..|.+|+.++++.++.+.-.|+++.|+.++..+.    ..+...++.+|.||...++.+...+.+.|
T Consensus       175 L~d~rE~iRneallLL~~Lt~~n~~iQklVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~~FrEt~  254 (651)
T 3grl_A          175 LADSREVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLKNNNSNQNFFKEGS  254 (651)
T ss_dssp             GGCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHTTCHHHHHHHHHTT
T ss_pred             HhCchHHHHHHHHHHHHHHhcCCHHHHHHHHHhccHHHHHHHHHhcCCCccchhHHHHHHHHHHHHhcCHHHHHHHHHcC
Confidence            99999999999999999999988888888888999999999998643    37889999999999999888889999999


Q ss_pred             CcHHHHHhhcCCCh------HHHHH---HHHHHHHhhccC------hhhHHHHHhcCCHHHHHHhhCCC--CHHHHHHHH
Q 015851          292 ALQPVIGLLSSCCS------ESQRE---AALLLGQFAATD------SDCKVHIVQRGAVRPLIEMLQSP--DVQLREMSA  354 (399)
Q Consensus       292 ~l~~L~~lL~~~~~------~v~~~---a~~~L~~l~~~~------~~~~~~l~~~g~v~~L~~ll~~~--~~~v~~~a~  354 (399)
                      +++.|..+|..+..      ....+   +..++.-++..+      +.++..+.+.|+++.|++++.+.  ...++..|.
T Consensus       255 ~i~~L~~LL~~~~~~~~W~~Qk~~N~~~~L~iIrlLv~~~~~~~~t~~nQ~~~~~~g~l~~Ll~ll~~~~~p~~i~~~Al  334 (651)
T 3grl_A          255 YIQRMKPWFEVGDENSGWSAQKVTNLHLMLQLVRVLVSPNNPPGATSSCQKAMFQCGLLQQLCTILMATGVPADILTETI  334 (651)
T ss_dssp             CGGGGGGGGCCCSCSSCCCHHHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHTTHHHHHHHHHTCSSCCHHHHHHHH
T ss_pred             CHHHHHHHhCCCccccccHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHCCCHHHHHHHHccCCCCHHHHHHHH
Confidence            99999999974322      12233   455666666542      25678899999999999999754  678999999


Q ss_pred             HHHHHhhccCCC
Q 015851          355 FALGRLAQVITV  366 (399)
Q Consensus       355 ~~L~~l~~~~~~  366 (399)
                      .+++.+.+..+.
T Consensus       335 ~tla~~irgN~~  346 (651)
T 3grl_A          335 NTVSEVIRGCQV  346 (651)
T ss_dssp             HHHHHHHTTCHH
T ss_pred             HHHHHHHhCCHH
Confidence            999998876653

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16

Probab=99.62  E-value=1.5e-13  Score=122.09  Aligned_cols=238  Identities=16%  Similarity=0.119  Sum_probs=178.3

Q ss_pred             HHHHhhhhhcchhhhHHHHHHHHHHHHHHcCChhHHHHHHhCCChHHHHhcccCCCCcccccCCCcchHHHHHHHHHHHH
Q 015851           62 QVNVLNTTFSWLEADRAAAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALG  141 (399)
Q Consensus        62 ~~~~L~~~l~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~~~~~a~~~L~  141 (399)
                      .++.|...+  .++++.+|..|++.|.++.. +         +.++.|+.++.+++.            .+|..|+++|+
T Consensus        24 ~i~~L~~~L--~~~~~~vr~~A~~~L~~~~~-~---------~~~~~L~~~l~d~~~------------~vR~~A~~aL~   79 (280)
T 1oyz_A           24 NDDELFRLL--DDHNSLKRISSARVLQLRGG-Q---------DAVRLAIEFCSDKNY------------IRRDIGAFILG   79 (280)
T ss_dssp             CHHHHHHHT--TCSSHHHHHHHHHHHHHHCC-H---------HHHHHHHHHHTCSSH------------HHHHHHHHHHH
T ss_pred             hHHHHHHHH--HcCCHHHHHHHHHHHHccCC-c---------hHHHHHHHHHcCCCH------------HHHHHHHHHHH
Confidence            455666666  35678899999999999862 2         347888899987765            79999999999


Q ss_pred             HhcCChhhHHHHHhcCcHHHHHHH-HhccccCccccccHHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhhcCCC
Q 015851          142 LLAVKPEHQQLIVDNGALSHLVNL-LKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTD  220 (399)
Q Consensus       142 ~l~~~~~~~~~i~~~~~i~~L~~~-L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~  220 (399)
                      .+...+.....     .++.|... +.+.+.        .++..++++|+++...++...     ...++.|+.++.+++
T Consensus        80 ~l~~~~~~~~~-----l~~~L~~~~~~d~~~--------~vr~~a~~aL~~l~~~~~~~~-----~~~~~~L~~~l~d~~  141 (280)
T 1oyz_A           80 QIKICKKCEDN-----VFNILNNMALNDKSA--------CVRATAIESTAQRCKKNPIYS-----PKIVEQSQITAFDKS  141 (280)
T ss_dssp             HSCCCTTTHHH-----HHHHHHHHHHHCSCH--------HHHHHHHHHHHHHHHHCGGGH-----HHHHHHHHHHTTCSC
T ss_pred             HhccccccchH-----HHHHHHHHHhcCCCH--------HHHHHHHHHHHHHhccCCccc-----HHHHHHHHHHhhCCC
Confidence            99844322111     22333322 333333        899999999999985443222     245788999999999


Q ss_pred             HHHHHHHHHHHHHhhcCChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHHCCCcHHHHHhh
Q 015851          221 TKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLL  300 (399)
Q Consensus       221 ~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL  300 (399)
                      +.++..++.+|+++..           .+.++.|+.++.++++.++..|+++|+.+....+         .+++.|+.++
T Consensus       142 ~~vR~~a~~aL~~~~~-----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~---------~~~~~L~~~l  201 (280)
T 1oyz_A          142 TNVRRATAFAISVIND-----------KATIPLLINLLKDPNGDVRNWAAFAININKYDNS---------DIRDCFVEML  201 (280)
T ss_dssp             HHHHHHHHHHHHTC--------------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCCH---------HHHHHHHHHT
T ss_pred             HHHHHHHHHHHHhcCC-----------HHHHHHHHHHHcCCCHHHHHHHHHHHHhhccCcH---------HHHHHHHHHh
Confidence            9999999999998764           2479999999999999999999999999853322         2467889999


Q ss_pred             cCCChHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhccCCCCcchhHHHHHh
Q 015851          301 SSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQVITVSVLPAILIFII  377 (399)
Q Consensus       301 ~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~  377 (399)
                      .++++.++..|+++|+++.           ....++.|+.++.+++  ++..|..+|+.+..   ...+|.+...+.
T Consensus       202 ~d~~~~vR~~A~~aL~~~~-----------~~~~~~~L~~~l~d~~--vr~~a~~aL~~i~~---~~~~~~L~~~l~  262 (280)
T 1oyz_A          202 QDKNEEVRIEAIIGLSYRK-----------DKRVLSVLCDELKKNT--VYDDIIEAAGELGD---KTLLPVLDTMLY  262 (280)
T ss_dssp             TCSCHHHHHHHHHHHHHTT-----------CGGGHHHHHHHHTSSS--CCHHHHHHHHHHCC---GGGHHHHHHHHT
T ss_pred             cCCCHHHHHHHHHHHHHhC-----------CHhhHHHHHHHhcCcc--HHHHHHHHHHhcCc---hhhhHHHHHHHh
Confidence            9999999999999999985           2346888899997654  89999999999865   345776655553

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*

Probab=99.54  E-value=4.1e-14  Score=145.29  Aligned_cols=279  Identities=14%  Similarity=0.129  Sum_probs=191.7

Q ss_pred             hhhHHHHhhhhhcchhhhHHHHHHHHHHHHHHcCC-hhHHHHHHhCCChHHHHhcccCCCCcccccCCCcchHHHHHHHH
Q 015851           59 VSAQVNVLNTTFSWLEADRAAAKRATHVLAELAKN-EEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSA  137 (399)
Q Consensus        59 ~~~~~~~L~~~l~~~~~~~~~~~~a~~~L~~l~~~-~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~~~~~a~  137 (399)
                      ...+++.+...+  .+.+..+|..|+++|.++... +..... .-.++++.+..++.+++.            ++|..++
T Consensus       172 ~~~il~~l~~~l--~~~~~~vR~~A~~aL~~~~~~~~~~~~~-~~~~~l~~l~~~~~d~~~------------~vr~~a~  236 (852)
T 4fdd_A          172 LNIMIPKFLQFF--KHSSPKIRSHAVACVNQFIISRTQALML-HIDSFIENLFALAGDEEP------------EVRKNVC  236 (852)
T ss_dssp             HHHHHHHHTTTT--TCSSHHHHHHHHHHHHTTTTTTCHHHHT-SHHHHHHHHHHHHTCCCH------------HHHHHHH
T ss_pred             HHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHHhcccHHHHH-HHHHHHHHHHHHcCCCCH------------HHHHHHH
Confidence            344566666655  456778999999999988764 221100 012467788887776554            8999999


Q ss_pred             HHHHHhc-CChhhHHHHHhcCcHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhhcCchhHHHHH--hcCChHHHHH
Q 015851          138 FALGLLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVR--MEGGIPPLVE  214 (399)
Q Consensus       138 ~~L~~l~-~~~~~~~~i~~~~~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~--~~~~i~~L~~  214 (399)
                      ++|..++ ..++.-..... +.++.++..+.+.++        +++..++.++..++... ..+..+.  ....+|.++.
T Consensus       237 ~~L~~l~~~~~~~~~~~l~-~l~~~l~~~~~~~~~--------~vr~~a~e~l~~l~~~~-~~~~~~~~~~~~l~p~ll~  306 (852)
T 4fdd_A          237 RALVMLLEVRMDRLLPHMH-NIVEYMLQRTQDQDE--------NVALEACEFWLTLAEQP-ICKDVLVRHLPKLIPVLVN  306 (852)
T ss_dssp             HHHHHHHHHCHHHHGGGHH-HHHHHHHHHHTCSSH--------HHHHHHHHHHHHHTTST-THHHHHTTTHHHHHHHHHH
T ss_pred             HHHHHHHHhCHHHHHHHHH-HHHHHHHHHccCCcH--------HHHHHHHHHHHHHhcch-hHHHHHHHHHHHHHHHHHH
Confidence            9999999 55543222111 366777777776543        89999999999998532 2222111  1134566666


Q ss_pred             hh-----------cC-----------CCHHHHHHHHHHHHHhhcCChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHH
Q 015851          215 LL-----------EF-----------TDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGV  272 (399)
Q Consensus       215 ll-----------~~-----------~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~  272 (399)
                      .+           .+           .+..++..+..+|..++...++   .+.. .+++.+...+.+++..+|..|+++
T Consensus       307 ~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~~---~~~~-~l~~~l~~~l~~~~~~~R~aa~~a  382 (852)
T 4fdd_A          307 GMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYRD---ELLP-HILPLLKELLFHHEWVVKESGILV  382 (852)
T ss_dssp             HTSCCHHHHHHHHC------------CCCCHHHHHHHHHHHHHHHHGG---GGHH-HHHHHHHHHHTCSSHHHHHHHHHH
T ss_pred             HcCCcHhHHHHhcCCcccccccccccccchHHHHHHHHHHHHHHhccH---HHHH-HHHHHHHHHhcCCCHHHHHHHHHH
Confidence            66           22           2235788999999999863222   1222 367788888888999999999999


Q ss_pred             HHHhhcCChhHHHHHHHCCCcHHHHHhhcCCChHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHhhCCCCHHHHHH
Q 015851          273 IGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREM  352 (399)
Q Consensus       273 L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~v~~L~~ll~~~~~~v~~~  352 (399)
                      +++++.+...... ..-.++++.++..+.++++.++..|+++|++++...+.......-.++++.|++.+.++++.++..
T Consensus       383 lg~i~~~~~~~~~-~~l~~~l~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~L~~~L~d~~~~vr~~  461 (852)
T 4fdd_A          383 LGAIAEGCMQGMI-PYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNKRVQEA  461 (852)
T ss_dssp             HHHTTTTTHHHHG-GGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTHHHHHHSCTTTTHHHHHHHHHHHHTCSSHHHHHH
T ss_pred             HHHHHhcchHHHH-HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhCCCHHHHHH
Confidence            9999976543222 122457889999999999999999999999998532211111112356788999998889999999


Q ss_pred             HHHHHHHhhccCCCC
Q 015851          353 SAFALGRLAQVITVS  367 (399)
Q Consensus       353 a~~~L~~l~~~~~~~  367 (399)
                      |+++|.+++...+..
T Consensus       462 a~~aL~~l~~~~~~~  476 (852)
T 4fdd_A          462 ACSAFATLEEEACTE  476 (852)
T ss_dssp             HHHHHHHHHHHHGGG
T ss_pred             HHHHHHHHHHHhhHh
Confidence            999999999876654

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*

Probab=99.54  E-value=2.3e-13  Score=139.76  Aligned_cols=277  Identities=14%  Similarity=0.150  Sum_probs=191.8

Q ss_pred             hhhhHHHHhhhhhcchhhhHHHHHHHHHHHHHHcCC-hhHHHHHH----hCCChHHHHhcccCCCCcccccCCCcchHHH
Q 015851           58 EVSAQVNVLNTTFSWLEADRAAAKRATHVLAELAKN-EEVVNWIV----EGGAVPALVKHLQAPPTSEADRNLKPFEHEV  132 (399)
Q Consensus        58 ~~~~~~~~L~~~l~~~~~~~~~~~~a~~~L~~l~~~-~~~~~~~~----~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~~  132 (399)
                      .++.+++.|...+.  +.+...+..|+.+|..++.+ +.....-.    -.++++.+++++.+++.            ++
T Consensus       125 ~wp~ll~~L~~~l~--~~~~~~r~~al~~L~~i~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~------------~v  190 (852)
T 4fdd_A          125 NWPDLLPKLCSLLD--SEDYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFLQFFKHSSP------------KI  190 (852)
T ss_dssp             TCTTHHHHHHHHHS--CSSHHHHHHHHHHHHHHHHHHTTHHHHCSSSSCHHHHHHHHTTTTTCSSH------------HH
T ss_pred             ccHHHHHHHHHHHc--CCCHHHHHHHHHHHHHHHHHhHHHhchhhhcchHHHHHHHHHHHhcCCCH------------HH
Confidence            46678888887774  44667899999999999875 33211100    12357778888876544            89


Q ss_pred             HHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHH
Q 015851          133 EKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPL  212 (399)
Q Consensus       133 ~~~a~~~L~~l~~~~~~~~~i~~~~~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L  212 (399)
                      |..|+++|.++.........-.-.+.++.++..+.+.+.        +++..++++|..++...+..-... -.++++.+
T Consensus       191 R~~A~~aL~~~~~~~~~~~~~~~~~~l~~l~~~~~d~~~--------~vr~~a~~~L~~l~~~~~~~~~~~-l~~l~~~l  261 (852)
T 4fdd_A          191 RSHAVACVNQFIISRTQALMLHIDSFIENLFALAGDEEP--------EVRKNVCRALVMLLEVRMDRLLPH-MHNIVEYM  261 (852)
T ss_dssp             HHHHHHHHHTTTTTTCHHHHTSHHHHHHHHHHHHTCCCH--------HHHHHHHHHHHHHHHHCHHHHGGG-HHHHHHHH
T ss_pred             HHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHcCCCCH--------HHHHHHHHHHHHHHHhCHHHHHHH-HHHHHHHH
Confidence            999999999888332211100011366777777765544        899999999999997655422111 12467888


Q ss_pred             HHhhcCCCHHHHHHHHHHHHHhhcCChhhHHHHHh---cCCHHHHHHhh-----------cC-----------CCHHHHH
Q 015851          213 VELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVE---CNALPTLILML-----------RS-----------EDSAIHY  267 (399)
Q Consensus       213 ~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~---~~~~~~L~~ll-----------~~-----------~~~~v~~  267 (399)
                      +..+.+.++.++..|+.++..++.. ...+. ...   ...+|.++..+           .+           .+..++.
T Consensus       262 ~~~~~~~~~~vr~~a~e~l~~l~~~-~~~~~-~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~  339 (852)
T 4fdd_A          262 LQRTQDQDENVALEACEFWLTLAEQ-PICKD-VLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRK  339 (852)
T ss_dssp             HHHHTCSSHHHHHHHHHHHHHHTTS-TTHHH-HHTTTHHHHHHHHHHHTSCCHHHHHHHHC------------CCCCHHH
T ss_pred             HHHccCCcHHHHHHHHHHHHHHhcc-hhHHH-HHHHHHHHHHHHHHHHcCCcHhHHHHhcCCcccccccccccccchHHH
Confidence            8888999999999999999999863 32222 222   23466676666           22           1224788


Q ss_pred             HHHHHHHHhhcCChhHHHHHHHCCCcHHHHHhhcCCChHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHhhCCCCH
Q 015851          268 EAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDV  347 (399)
Q Consensus       268 ~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~v~~L~~ll~~~~~  347 (399)
                      .|..+|..++...+..   +. ..+++.+...+.++++.+|..|+++|++++.+..+.... .-.++++.++.++.++++
T Consensus       340 ~a~~~L~~la~~~~~~---~~-~~l~~~l~~~l~~~~~~~R~aa~~alg~i~~~~~~~~~~-~l~~~l~~l~~~l~d~~~  414 (852)
T 4fdd_A          340 CSAAALDVLANVYRDE---LL-PHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIP-YLPELIPHLIQCLSDKKA  414 (852)
T ss_dssp             HHHHHHHHHHHHHGGG---GH-HHHHHHHHHHHTCSSHHHHHHHHHHHHHTTTTTHHHHGG-GHHHHHHHHHHHTTCSSH
T ss_pred             HHHHHHHHHHHhccHH---HH-HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcchHHHHH-HHHHHHHHHHHHcCCCCH
Confidence            9999999998543221   11 135777778888889999999999999999765432222 224578999999999999


Q ss_pred             HHHHHHHHHHHHhhccC
Q 015851          348 QLREMSAFALGRLAQVI  364 (399)
Q Consensus       348 ~v~~~a~~~L~~l~~~~  364 (399)
                      .||..|++++++++...
T Consensus       415 ~Vr~~a~~~l~~l~~~~  431 (852)
T 4fdd_A          415 LVRSITCWTLSRYAHWV  431 (852)
T ss_dssp             HHHHHHHHHHHHTHHHH
T ss_pred             HHHHHHHHHHHHHHHHh
Confidence            99999999999999853

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16

Probab=99.52  E-value=3.2e-12  Score=113.47  Aligned_cols=215  Identities=13%  Similarity=0.016  Sum_probs=165.5

Q ss_pred             HHhCCChHHHHhcccCCCCcccccCCCcchHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHHHhccccCccccccH
Q 015851          100 IVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVN  179 (399)
Q Consensus       100 ~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~~~i~~L~~~L~~~~~~~~~~~~~  179 (399)
                      ....+.++.|+..|.+++.            .+|..|+++|+++..          .+.++.|+.++.+.+.        
T Consensus        19 ~~~~~~i~~L~~~L~~~~~------------~vr~~A~~~L~~~~~----------~~~~~~L~~~l~d~~~--------   68 (280)
T 1oyz_A           19 QCKKLNDDELFRLLDDHNS------------LKRISSARVLQLRGG----------QDAVRLAIEFCSDKNY--------   68 (280)
T ss_dssp             HHHTSCHHHHHHHTTCSSH------------HHHHHHHHHHHHHCC----------HHHHHHHHHHHTCSSH--------
T ss_pred             HHHHhhHHHHHHHHHcCCH------------HHHHHHHHHHHccCC----------chHHHHHHHHHcCCCH--------
Confidence            3456789999999987665            889999999999872          2367889999987655        


Q ss_pred             HHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHH-HhhcCCCHHHHHHHHHHHHHhhcCChhhHHHHHhcCCHHHHHHhh
Q 015851          180 SVIRRAADAITNLAHENSSIKTRVRMEGGIPPLV-ELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILML  258 (399)
Q Consensus       180 ~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~-~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~L~~ll  258 (399)
                      .++..++++|..+........      ..++.+. .++.++++.++..++++|+++....+...     ...++.|+.++
T Consensus        69 ~vR~~A~~aL~~l~~~~~~~~------~l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~~~~-----~~~~~~L~~~l  137 (280)
T 1oyz_A           69 IRRDIGAFILGQIKICKKCED------NVFNILNNMALNDKSACVRATAIESTAQRCKKNPIYS-----PKIVEQSQITA  137 (280)
T ss_dssp             HHHHHHHHHHHHSCCCTTTHH------HHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGGGH-----HHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHhccccccch------HHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCccc-----HHHHHHHHHHh
Confidence            899999999999874322211      1234444 34677889999999999999985333222     23578899999


Q ss_pred             cCCCHHHHHHHHHHHHHhhcCChhHHHHHHHCCCcHHHHHhhcCCChHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHH
Q 015851          259 RSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPL  338 (399)
Q Consensus       259 ~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~v~~L  338 (399)
                      .++++.++..|+++|+++..           .+.++.|+.++.++++.++..|+++|+.+...++         .+++.|
T Consensus       138 ~d~~~~vR~~a~~aL~~~~~-----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~---------~~~~~L  197 (280)
T 1oyz_A          138 FDKSTNVRRATAFAISVIND-----------KATIPLLINLLKDPNGDVRNWAAFAININKYDNS---------DIRDCF  197 (280)
T ss_dssp             TCSCHHHHHHHHHHHHTC--------------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCCH---------HHHHHH
T ss_pred             hCCCHHHHHHHHHHHHhcCC-----------HHHHHHHHHHHcCCCHHHHHHHHHHHHhhccCcH---------HHHHHH
Confidence            99999999999999998852           2478999999999999999999999999853222         346889


Q ss_pred             HHhhCCCCHHHHHHHHHHHHHhhccCCCCcchhHHHHHhh
Q 015851          339 IEMLQSPDVQLREMSAFALGRLAQVITVSVLPAILIFIII  378 (399)
Q Consensus       339 ~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~  378 (399)
                      ..++.++++.+|..|+++|+++.   +...++.+...+..
T Consensus       198 ~~~l~d~~~~vR~~A~~aL~~~~---~~~~~~~L~~~l~d  234 (280)
T 1oyz_A          198 VEMLQDKNEEVRIEAIIGLSYRK---DKRVLSVLCDELKK  234 (280)
T ss_dssp             HHHTTCSCHHHHHHHHHHHHHTT---CGGGHHHHHHHHTS
T ss_pred             HHHhcCCCHHHHHHHHHHHHHhC---CHhhHHHHHHHhcC
Confidence            99999999999999999999997   33456766665543

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}

Probab=99.50  E-value=5.6e-13  Score=113.14  Aligned_cols=190  Identities=25%  Similarity=0.274  Sum_probs=154.5

Q ss_pred             CCChHHHHhcccCCCCcccccCCCcchHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHHHhccccCccccccHHHH
Q 015851          103 GGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVI  182 (399)
Q Consensus       103 ~g~l~~L~~lL~~~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~~~i~~L~~~L~~~~~~~~~~~~~~~~  182 (399)
                      .+.++.|+.+|.+++.            .+|..|+++|+.+..          .+.++.|+.++.+.+.        .++
T Consensus        18 ~~~~~~L~~~L~~~~~------------~vR~~A~~~L~~~~~----------~~~~~~L~~~l~~~~~--------~vr   67 (211)
T 3ltm_A           18 PEKVEMYIKNLQDDSY------------YVRRAAAYALGKIGD----------ERAVEPLIKALKDEDA--------WVR   67 (211)
T ss_dssp             GGGHHHHHHHTTCSSH------------HHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSCH--------HHH
T ss_pred             HhHHHHHHHHHcCCCH------------HHHHHHHHHHHHhCC----------ccHHHHHHHHHcCCCH--------HHH
Confidence            3568889999987665            899999999998864          2478999999987654        899


Q ss_pred             HHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhhHHHHHhcCCHHHHHHhhcCCC
Q 015851          183 RRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSED  262 (399)
Q Consensus       183 ~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~L~~ll~~~~  262 (399)
                      ..++++|..+..           .+.++.|+.+|.++++.++..++.+|+.+..  +         +.++.|+.++.+++
T Consensus        68 ~~a~~aL~~~~~-----------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~--~---------~~~~~L~~~l~d~~  125 (211)
T 3ltm_A           68 RAAADALGQIGD-----------ERAVEPLIKALKDEDGWVRQSAAVALGQIGD--E---------RAVEPLIKALKDED  125 (211)
T ss_dssp             HHHHHHHHHHCC-----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC--G---------GGHHHHHHHTTCSS
T ss_pred             HHHHHHHHhhCC-----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc--H---------HHHHHHHHHHhCCC
Confidence            999999988762           3467889999999999999999999998864  2         46899999999999


Q ss_pred             HHHHHHHHHHHHHhhcCChhHHHHHHHCCCcHHHHHhhcCCChHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHhh
Q 015851          263 SAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEML  342 (399)
Q Consensus       263 ~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~v~~L~~ll  342 (399)
                      +.++..|+++|+++.  .+         ..++.|..++.++++.++..|+.+|..+.  .         ..+++.|..++
T Consensus       126 ~~vr~~a~~aL~~~~--~~---------~~~~~L~~~l~d~~~~vr~~a~~aL~~~~--~---------~~~~~~L~~~l  183 (211)
T 3ltm_A          126 WFVRIAAAFALGEIG--DE---------RAVEPLIKALKDEDGWVRQSAADALGEIG--G---------ERVRAAMEKLA  183 (211)
T ss_dssp             HHHHHHHHHHHHHHC--CG---------GGHHHHHHHTTCSSHHHHHHHHHHHHHHC--S---------HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcC--CH---------HHHHHHHHHHcCCCHHHHHHHHHHHHHhC--c---------hhHHHHHHHHH
Confidence            999999999999994  22         35788999999999999999999999984  2         23467888889


Q ss_pred             CCCCHHHHHHHHHHHHHhhccCCC
Q 015851          343 QSPDVQLREMSAFALGRLAQVITV  366 (399)
Q Consensus       343 ~~~~~~v~~~a~~~L~~l~~~~~~  366 (399)
                      .++++.||..|..+|.++....++
T Consensus       184 ~d~~~~vr~~A~~aL~~~~~~~~~  207 (211)
T 3ltm_A          184 ETGTGFARKVAVNYLETHKSFNHH  207 (211)
T ss_dssp             HHCCHHHHHHHHHHHHC-------
T ss_pred             hCCCHHHHHHHHHHHHhcCCCCCC
Confidence            889999999999999999877654

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A

Probab=99.48  E-value=1.7e-12  Score=127.40  Aligned_cols=298  Identities=14%  Similarity=0.123  Sum_probs=209.5

Q ss_pred             hhHHHHhhhhhcchhhhHHHHHHHHHHHHHHcCC--hhHHHHHHhCCChHHHHhcccCCCCcccccCCCcchHHHHHHHH
Q 015851           60 SAQVNVLNTTFSWLEADRAAAKRATHVLAELAKN--EEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSA  137 (399)
Q Consensus        60 ~~~~~~L~~~l~~~~~~~~~~~~a~~~L~~l~~~--~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~~~~~a~  137 (399)
                      +.+++.+..++  .++++.+|..|+++|..++..  ++.+.......++|.+..++.+++.            .+|..++
T Consensus       280 ~~l~~~l~~~l--~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~l~d~~~------------~vR~~a~  345 (588)
T 1b3u_A          280 TDLVPAFQNLM--KDCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDANQ------------HVKSALA  345 (588)
T ss_dssp             HTHHHHHHHHH--TCSSHHHHHHHHHHHHHHHHTSCTTTHHHHHHHTHHHHHHHHHTCSCH------------HHHHHHH
T ss_pred             hHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHHHhChhhhhhHHHHHHHHHHHHHhcCCCH------------HHHHHHH
Confidence            34566666665  456778899999999888764  3322222334567888888877655            7899999


Q ss_pred             HHHHHhcCChhhHHHHHhcCcHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhhc
Q 015851          138 FALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLE  217 (399)
Q Consensus       138 ~~L~~l~~~~~~~~~i~~~~~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~  217 (399)
                      ++|+.++..-...  ......++.+..++++.+.        +++..++.++..+.......   ......+|.+..++.
T Consensus       346 ~~l~~l~~~~~~~--~~~~~l~p~l~~~l~d~~~--------~Vr~~a~~~l~~l~~~~~~~---~~~~~~lp~l~~~~~  412 (588)
T 1b3u_A          346 SVIMGLSPILGKD--NTIEHLLPLFLAQLKDECP--------EVRLNIISNLDCVNEVIGIR---QLSQSLLPAIVELAE  412 (588)
T ss_dssp             TTGGGGHHHHCHH--HHHHHTHHHHHHHHTCSCH--------HHHHHHHTTCHHHHHHSCHH---HHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHhhHh--HHHHHHHHHHHHHhCCCch--------HHHHHHHHHHHHHHHhcCHH---HHHHHHHHHHHHHhc
Confidence            9999998221111  1123367888888876554        89999999998888543221   122456788889999


Q ss_pred             CCCHHHHHHHHHHHHHhhcCChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHHCCCcHHHH
Q 015851          218 FTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVI  297 (399)
Q Consensus       218 ~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~  297 (399)
                      +.++.++..++.++..++.....   .+....++|.+...+.+++..+|..|+.+++.++.....   ......+++.+.
T Consensus       413 d~~~~vr~~~~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~---~~~~~~llp~l~  486 (588)
T 1b3u_A          413 DAKWRVRLAIIEYMPLLAGQLGV---EFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGK---EWAHATIIPKVL  486 (588)
T ss_dssp             CSSHHHHHHHHHHHHHHHHHHCG---GGCCHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCH---HHHHHHTHHHHH
T ss_pred             CCCchHHHHHHHHHHHHHHHcCH---HHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCc---hhHHHHHHHHHH
Confidence            99999999999999998852111   111223678899999999999999999999999853221   122345788888


Q ss_pred             HhhcCCChHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhccCCCC-----cchhH
Q 015851          298 GLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQVITVS-----VLPAI  372 (399)
Q Consensus       298 ~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~-----~~~~~  372 (399)
                      .++.+++..+|..++++++.++..-  . .......++|.|.+++.++++.||..++++|..++...+..     +.|.+
T Consensus       487 ~~~~~~~~~~R~~a~~~l~~l~~~~--~-~~~~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~p~l  563 (588)
T 1b3u_A          487 AMSGDPNYLHRMTTLFCINVLSEVC--G-QDITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNSTLQSEVKPIL  563 (588)
T ss_dssp             HTTTCSCHHHHHHHHHHHHHHHHHH--H-HHHHHHHTHHHHHHGGGCSCHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHH
T ss_pred             HHhhCCCHHHHHHHHHHHHHHHHhc--C-HHHHHHHHHHHHHhhCCCCCchHHHHHHHHHHHHHHHhchhhhHHHHHHHH
Confidence            8888889999999999999997531  1 12234567899999999999999999999999999765443     23333


Q ss_pred             HHHHhhccccHHHHHHHHhhhHh
Q 015851          373 LIFIIINECQLEVLAFVLSEMVL  395 (399)
Q Consensus       373 ~~~~~~~~~~~~~~~~~l~~~~~  395 (399)
                      ..  +..+...++...+...+..
T Consensus       564 ~~--l~~d~d~~vr~~a~~al~~  584 (588)
T 1b3u_A          564 EK--LTQDQDVDVKYFAQEALTV  584 (588)
T ss_dssp             HH--HTTCSSHHHHHHHHHHHHH
T ss_pred             HH--HcCCCchhHHHHHHHHHHH
Confidence            22  3455566777766665544

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}

Probab=99.47  E-value=1.2e-12  Score=110.10  Aligned_cols=184  Identities=26%  Similarity=0.297  Sum_probs=153.7

Q ss_pred             CChHHHHhcccCCCCcccccCCCcchHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHHHhccccCccccccHHHHH
Q 015851          104 GAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIR  183 (399)
Q Consensus       104 g~l~~L~~lL~~~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~~~i~~L~~~L~~~~~~~~~~~~~~~~~  183 (399)
                      +..+.++++|.+++.            .+|..|+++|+.+..          .+.++.|+..+.+.+.        .++.
T Consensus        14 ~~~~~~i~~L~~~~~------------~vr~~A~~~L~~~~~----------~~~~~~L~~~l~~~~~--------~vr~   63 (201)
T 3ltj_A           14 EKVEMYIKNLQDDSY------------YVRRAAAYALGKIGD----------ERAVEPLIKALKDEDA--------WVRR   63 (201)
T ss_dssp             HHHHHHHHHTTCSCH------------HHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSH--------HHHH
T ss_pred             cchHHHHHHhcCCCH------------HHHHHHHHHHHhcCC----------hhHHHHHHHHHcCCCH--------HHHH
Confidence            457788899988776            889999999998874          2478999999976654        8899


Q ss_pred             HHHHHHHHHhhcCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhhHHHHHhcCCHHHHHHhhcCCCH
Q 015851          184 RAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDS  263 (399)
Q Consensus       184 ~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~L~~ll~~~~~  263 (399)
                      .++++|..+..           ...++.|+.+|.++++.++..|+++|+.+..  +         ..++.|+.++.++++
T Consensus        64 ~a~~~L~~~~~-----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~--~---------~~~~~L~~~l~d~~~  121 (201)
T 3ltj_A           64 AAADALGQIGD-----------ERAVEPLIKALKDEDGWVRQSAAVALGQIGD--E---------RAVEPLIKALKDEDW  121 (201)
T ss_dssp             HHHHHHHHHCC-----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC--G---------GGHHHHHHHTTCSSH
T ss_pred             HHHHHHHhhCC-----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc--H---------HHHHHHHHHHcCCCH
Confidence            99999988752           2467889999999999999999999998864  2         368889999999999


Q ss_pred             HHHHHHHHHHHHhhcCChhHHHHHHHCCCcHHHHHhhcCCChHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHhhC
Q 015851          264 AIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQ  343 (399)
Q Consensus       264 ~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~v~~L~~ll~  343 (399)
                      .++..|+++|+.+..           .+.++.|..++.++++.++..|+.+|+.+.  ++.         .++.|..++.
T Consensus       122 ~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~--~~~---------~~~~L~~~l~  179 (201)
T 3ltj_A          122 FVRIAAAFALGEIGD-----------ERAVEPLIKALKDEDGWVRQSAADALGEIG--GER---------VRAAMEKLAE  179 (201)
T ss_dssp             HHHHHHHHHHHHHTC-----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHC--SHH---------HHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCC-----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhC--chh---------HHHHHHHHHh
Confidence            999999999999842           236788999999999999999999999983  222         4778888888


Q ss_pred             CCCHHHHHHHHHHHHHhh
Q 015851          344 SPDVQLREMSAFALGRLA  361 (399)
Q Consensus       344 ~~~~~v~~~a~~~L~~l~  361 (399)
                      ++++.++..|..+|..+.
T Consensus       180 d~~~~vr~~A~~aL~~l~  197 (201)
T 3ltj_A          180 TGTGFARKVAVNYLETHK  197 (201)
T ss_dssp             HCCHHHHHHHHHHHHHCC
T ss_pred             CCCHHHHHHHHHHHHHHH
Confidence            899999999999998875

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A

Probab=99.45  E-value=6.2e-12  Score=123.46  Aligned_cols=296  Identities=16%  Similarity=0.155  Sum_probs=205.1

Q ss_pred             hhhHHHHhhhhhcchhhhHHHHHHHHHHHHHHcCC-hhHHHHHHhCCChHHHHhcccCCCCcccccCCCcchHHHHHHHH
Q 015851           59 VSAQVNVLNTTFSWLEADRAAAKRATHVLAELAKN-EEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSA  137 (399)
Q Consensus        59 ~~~~~~~L~~~l~~~~~~~~~~~~a~~~L~~l~~~-~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~~~~~a~  137 (399)
                      ...+++.|...+  .+++..+|..|..+|.+++.. +..   .....+++.+..+..+++.            ..|..++
T Consensus        85 ~~~ll~~L~~l~--~~~~~~vR~~a~~~L~~l~~~~~~~---~~~~~l~~~l~~l~~~~~~------------~~R~~a~  147 (588)
T 1b3u_A           85 VHCLLPPLESLA--TVEETVVRDKAVESLRAISHEHSPS---DLEAHFVPLVKRLAGGDWF------------TSRTSAC  147 (588)
T ss_dssp             GGGGHHHHHHHT--TSSCHHHHHHHHHHHHHHHTTSCHH---HHHHTHHHHHHHHHTCSSH------------HHHHHHG
T ss_pred             HHHHHHHHHHHH--hCchHHHHHHHHHHHHHHHHHCCHH---HHHHHHHHHHHHHhcCCCc------------HHHHHHH
Confidence            344555555544  356778999999999999885 321   1222346666666655433            7888999


Q ss_pred             HHHHHhcCChhhHHHHHhcCcHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhhc
Q 015851          138 FALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLE  217 (399)
Q Consensus       138 ~~L~~l~~~~~~~~~i~~~~~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~  217 (399)
                      .+++.++..-...   .....++.+..++.+.+.        .++..++.+|..++......   ......+|.+..++.
T Consensus       148 ~~l~~~~~~~~~~---~~~~l~~~l~~l~~d~~~--------~VR~~a~~~l~~l~~~~~~~---~~~~~l~~~l~~~~~  213 (588)
T 1b3u_A          148 GLFSVCYPRVSSA---VKAELRQYFRNLCSDDTP--------MVRRAAASKLGEFAKVLELD---NVKSEIIPMFSNLAS  213 (588)
T ss_dssp             GGHHHHTTTSCHH---HHHHHHHHHHHHHTCSCH--------HHHHHHHHHHHHHHHTSCHH---HHHHTHHHHHHHHHT
T ss_pred             HHHHHHHHhcCHH---HHHHHHHHHHHHhCCCCH--------HHHHHHHHHHHHHHHHhcHH---hHHHHHHHHHHHHhc
Confidence            9999988322111   122356777777765544        89999999999999654321   223567899999999


Q ss_pred             CCCHHHHHHHHHHHHHhhcCChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHHCCCcHHHH
Q 015851          218 FTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVI  297 (399)
Q Consensus       218 ~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~  297 (399)
                      ++++.+|..|+.+|..++...+.   ......++|.+..++.+++..+|..++.+|+.++...+.   ......+++.++
T Consensus       214 d~~~~vr~~a~~~l~~l~~~~~~---~~~~~~~~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~---~~~~~~l~~~l~  287 (588)
T 1b3u_A          214 DEQDSVRLLAVEACVNIAQLLPQ---EDLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGP---EITKTDLVPAFQ  287 (588)
T ss_dssp             CSCHHHHTTHHHHHHHHHHHSCH---HHHHHHTHHHHHHHHTCSSHHHHHHHHHTHHHHHHHHCH---HHHHHTHHHHHH
T ss_pred             CCcHHHHHHHHHHHHHHHHhCCH---HHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhCc---ccchhHHHHHHH
Confidence            99999999999999999864322   122334788899999999999999999999999853211   122345789999


Q ss_pred             HhhcCCChHHHHHHHHHHHHhhccCh-hhHHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhccCCC-----Ccchh
Q 015851          298 GLLSSCCSESQREAALLLGQFAATDS-DCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQVITV-----SVLPA  371 (399)
Q Consensus       298 ~lL~~~~~~v~~~a~~~L~~l~~~~~-~~~~~l~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~-----~~~~~  371 (399)
                      .+++++++.++..|+.+|..++.... +.+.......++|.+..++.++++.+|..++++|..++...+.     .++|.
T Consensus       288 ~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~p~  367 (588)
T 1b3u_A          288 NLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGKDNTIEHLLPL  367 (588)
T ss_dssp             HHHTCSSHHHHHHHHHHHHHHHHTSCTTTHHHHHHHTHHHHHHHHHTCSCHHHHHHHHTTGGGGHHHHCHHHHHHHTHHH
T ss_pred             HHhCCCcHHHHHHHHHHHHHHHHHhChhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhHhHHHHHHHHH
Confidence            99999999999999999999986432 2222233455788888999999999999999999998864432     23344


Q ss_pred             HHHHHhhccccHHHHHHHHhhh
Q 015851          372 ILIFIIINECQLEVLAFVLSEM  393 (399)
Q Consensus       372 ~~~~~~~~~~~~~~~~~~l~~~  393 (399)
                      +...+  .+...++...++..+
T Consensus       368 l~~~l--~d~~~~Vr~~a~~~l  387 (588)
T 1b3u_A          368 FLAQL--KDECPEVRLNIISNL  387 (588)
T ss_dssp             HHHHH--TCSCHHHHHHHHTTC
T ss_pred             HHHHh--CCCchHHHHHHHHHH
Confidence            43333  344445555544433

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}

Probab=99.41  E-value=6.5e-12  Score=106.50  Aligned_cols=188  Identities=23%  Similarity=0.240  Sum_probs=152.5

Q ss_pred             hhhHHHHhhhhhcchhhhHHHHHHHHHHHHHHcCChhHHHHHHhCCChHHHHhcccCCCCcccccCCCcchHHHHHHHHH
Q 015851           59 VSAQVNVLNTTFSWLEADRAAAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAF  138 (399)
Q Consensus        59 ~~~~~~~L~~~l~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~~~~~a~~  138 (399)
                      .+..++.|...+  .+.++.+|..|++.|..+..          .+.++.|+.+|.+++.            .+|..+++
T Consensus        17 ~~~~~~~L~~~L--~~~~~~vR~~A~~~L~~~~~----------~~~~~~L~~~l~~~~~------------~vr~~a~~   72 (211)
T 3ltm_A           17 DPEKVEMYIKNL--QDDSYYVRRAAAYALGKIGD----------ERAVEPLIKALKDEDA------------WVRRAAAD   72 (211)
T ss_dssp             CGGGHHHHHHHT--TCSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSCH------------HHHHHHHH
T ss_pred             CHhHHHHHHHHH--cCCCHHHHHHHHHHHHHhCC----------ccHHHHHHHHHcCCCH------------HHHHHHHH
Confidence            355567777776  45678899999999998754          3568889999987655            89999999


Q ss_pred             HHHHhcCChhhHHHHHhcCcHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhhcC
Q 015851          139 ALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEF  218 (399)
Q Consensus       139 ~L~~l~~~~~~~~~i~~~~~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~  218 (399)
                      +|+.+..          .+.++.|+..|.+.+.        .++..++++|..+..           ...++.|+.++.+
T Consensus        73 aL~~~~~----------~~~~~~L~~~l~~~~~--------~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~d  123 (211)
T 3ltm_A           73 ALGQIGD----------ERAVEPLIKALKDEDG--------WVRQSAAVALGQIGD-----------ERAVEPLIKALKD  123 (211)
T ss_dssp             HHHHHCC----------GGGHHHHHHHTTCSSH--------HHHHHHHHHHHHHCC-----------GGGHHHHHHHTTC
T ss_pred             HHHhhCC----------HHHHHHHHHHHcCCCH--------HHHHHHHHHHHHhCc-----------HHHHHHHHHHHhC
Confidence            9999873          3478889999987655        899999999998862           2467889999999


Q ss_pred             CCHHHHHHHHHHHHHhhcCChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHHCCCcHHHHH
Q 015851          219 TDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIG  298 (399)
Q Consensus       219 ~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~  298 (399)
                      +++.++..++.+|+.+..  +         ..++.|..++.++++.++..|+.+|+.+.  .+.         .++.|..
T Consensus       124 ~~~~vr~~a~~aL~~~~~--~---------~~~~~L~~~l~d~~~~vr~~a~~aL~~~~--~~~---------~~~~L~~  181 (211)
T 3ltm_A          124 EDWFVRIAAAFALGEIGD--E---------RAVEPLIKALKDEDGWVRQSAADALGEIG--GER---------VRAAMEK  181 (211)
T ss_dssp             SSHHHHHHHHHHHHHHCC--G---------GGHHHHHHHTTCSSHHHHHHHHHHHHHHC--SHH---------HHHHHHH
T ss_pred             CCHHHHHHHHHHHHHcCC--H---------HHHHHHHHHHcCCCHHHHHHHHHHHHHhC--chh---------HHHHHHH
Confidence            999999999999999863  2         36889999999999999999999999994  222         4677888


Q ss_pred             hhcCCChHHHHHHHHHHHHhhcc
Q 015851          299 LLSSCCSESQREAALLLGQFAAT  321 (399)
Q Consensus       299 lL~~~~~~v~~~a~~~L~~l~~~  321 (399)
                      ++.++++.++..|..+|.++...
T Consensus       182 ~l~d~~~~vr~~A~~aL~~~~~~  204 (211)
T 3ltm_A          182 LAETGTGFARKVAVNYLETHKSF  204 (211)
T ss_dssp             HHHHCCHHHHHHHHHHHHC----
T ss_pred             HHhCCCHHHHHHHHHHHHhcCCC
Confidence            89999999999999999998753

>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A

Probab=99.41  E-value=3.6e-12  Score=121.31  Aligned_cols=282  Identities=11%  Similarity=0.062  Sum_probs=187.8

Q ss_pred             hhhhHHHHhhhhhcchhh--hHHHHHHHHHHHHHHcCC--hhHHHHHHhCCChHHHHhcccCCCCcccccCCCcchHHHH
Q 015851           58 EVSAQVNVLNTTFSWLEA--DRAAAKRATHVLAELAKN--EEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVE  133 (399)
Q Consensus        58 ~~~~~~~~L~~~l~~~~~--~~~~~~~a~~~L~~l~~~--~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~~~  133 (399)
                      .++.+++.|...+.  +.  ++..|..|+.+|..++.+  ++...... ..+++.+..++.++..          ++.+|
T Consensus       125 ~w~~ll~~L~~~l~--~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~-~~ll~~l~~~l~~~~~----------~~~vr  191 (462)
T 1ibr_B          125 QWPELIPQLVANVT--NPNSTEHMKESTLEAIGYICQDIDPEQLQDKS-NEILTAIIQGMRKEEP----------SNNVK  191 (462)
T ss_dssp             CCTTHHHHHHHHHH--CTTCCHHHHHHHHHHHHHHHHHSCGGGTGGGH-HHHHHHHHHHHSTTCC----------CHHHH
T ss_pred             ccHHHHHHHHHHhc--cCCCCHHHHHHHHHHHHHHHHhCCchhhHhHH-HHHHHHHHHHhCCCCC----------CHHHH
Confidence            56778888887773  34  677899999999999863  22211111 2367888888887631          12899


Q ss_pred             HHHHHHHHHhcCC-hhhHH-HHHhcCcHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhhcCchhHHHHHhcCChHH
Q 015851          134 KGSAFALGLLAVK-PEHQQ-LIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPP  211 (399)
Q Consensus       134 ~~a~~~L~~l~~~-~~~~~-~i~~~~~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~  211 (399)
                      ..|+++++++... .+... .....-.++.+...+.+.+.        +++..++.+|..++...+..-.......+++.
T Consensus       192 ~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~--------~vr~~~~~~l~~l~~~~~~~~~~~~~~~l~~~  263 (462)
T 1ibr_B          192 LAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDT--------RVRVAALQNLVKIMSLYYQYMETYMGPALFAI  263 (462)
T ss_dssp             HHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTCSSH--------HHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHH
T ss_pred             HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCCH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999997622 21110 00011124444444433332        88999999999999655432111111156777


Q ss_pred             HHHhhcCCCHHHHHHHHHHHHHhhcCChhhHH------------------HHHh---cCCHHHHHHhhcC-------CCH
Q 015851          212 LVELLEFTDTKVQRAAAGALRTLAFKNDENKN------------------QIVE---CNALPTLILMLRS-------EDS  263 (399)
Q Consensus       212 L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~------------------~~~~---~~~~~~L~~ll~~-------~~~  263 (399)
                      ++..+.+.++.++..++..+..++.. .....                  .+.+   ..++|.++..+..       ++.
T Consensus       264 ~~~~~~~~~~~v~~~a~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~l~~~l~~~d~d~~~~~~  342 (462)
T 1ibr_B          264 TIEAMKSDIDEVALQGIEFWSNVCDE-EMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDW  342 (462)
T ss_dssp             HHHHHHCSSHHHHHHHHHHHHHHHHH-HHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCC
T ss_pred             HHHHHcCCchHHHHHHHHHHHHHHHH-HHHHHHhcccccccCCCccchhHHHHHHHhhhccHHHHHHHHhcccccccccc
Confidence            77888888999999999999988862 10000                  0111   2356667777743       234


Q ss_pred             HHHHHHHHHHHHhhcCChhHHHHHHHCCCcHHHHHhhcCCChHHHHHHHHHHHHhhccCh-hhHHHHHhcCCHHHHHHhh
Q 015851          264 AIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDS-DCKVHIVQRGAVRPLIEML  342 (399)
Q Consensus       264 ~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~-~~~~~l~~~g~v~~L~~ll  342 (399)
                      .++..|+.+|..++...+..   +. ..+++.+...+.++++.++..|+.+|+.++.+.. +...... ..++|.++.++
T Consensus       343 ~~r~~a~~~L~~l~~~~~~~---~~-~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~~l-~~~~~~l~~~l  417 (462)
T 1ibr_B          343 NPCKAAGVCLMLLATCCEDD---IV-PHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLV-IQAMPTLIELM  417 (462)
T ss_dssp             SHHHHHHHHHHHHHHHTTTT---HH-HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCTTT-TTHHHHHHHGG
T ss_pred             hHHHHHHHHHHHHHHhccHH---HH-HHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCCcHHHHHHHH-HHHHHHHHHHh
Confidence            78999999999998643321   11 2356777788888999999999999999997532 2111111 56889999999


Q ss_pred             CCCCHHHHHHHHHHHHHhhccCCC
Q 015851          343 QSPDVQLREMSAFALGRLAQVITV  366 (399)
Q Consensus       343 ~~~~~~v~~~a~~~L~~l~~~~~~  366 (399)
                      .++++.||..|+++|++++...++
T Consensus       418 ~d~~~~Vr~~a~~~l~~~~~~~~~  441 (462)
T 1ibr_B          418 KDPSVVVRDTAAWTVGRICELLPE  441 (462)
T ss_dssp             GCSCHHHHHHHHHHHHHHHHHGGG
T ss_pred             cCCCHHHHHHHHHHHHHHHHhccc
Confidence            999999999999999999986654

>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B

Probab=99.38  E-value=3.2e-11  Score=118.47  Aligned_cols=300  Identities=17%  Similarity=0.193  Sum_probs=182.4

Q ss_pred             hhHHHHhhhhhcchhhhHHHHHHHHHHHHHHcC-ChhHHHHHHhCCChHHHHhcccCCCCcccccCCCcchHHHHHHHHH
Q 015851           60 SAQVNVLNTTFSWLEADRAAAKRATHVLAELAK-NEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAF  138 (399)
Q Consensus        60 ~~~~~~L~~~l~~~~~~~~~~~~a~~~L~~l~~-~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~~~~~a~~  138 (399)
                      +.+++.+...+  .+.++.+|..|++++.++.. +|+...   +.+.++.+.++|.++++            .++..|+.
T Consensus       120 ~~l~~~l~~~L--~d~~~~VRk~A~~al~~i~~~~p~~~~---~~~~~~~l~~lL~d~d~------------~V~~~A~~  182 (591)
T 2vgl_B          120 EYLCEPLRKCL--KDEDPYVRKTAAVCVAKLHDINAQMVE---DQGFLDSLRDLIADSNP------------MVVANAVA  182 (591)
T ss_dssp             HHHHHHHHHHS--SCSCHHHHHHHHHHHHHHHHSSCCCHH---HHHHHHHHHHTTSCSCH------------HHHHHHHH
T ss_pred             HHHHHHHHHHc--CCCChHHHHHHHHHHHHHHhhChhhcc---cccHHHHHHHHhCCCCh------------hHHHHHHH
Confidence            44455566666  46788999999999999987 355322   24678999999987665            78999999


Q ss_pred             HHHHhc-CChhh---------HHHHHh----c------------------------CcHHHHHHHHhccccCccccccHH
Q 015851          139 ALGLLA-VKPEH---------QQLIVD----N------------------------GALSHLVNLLKRHMDSNCSRAVNS  180 (399)
Q Consensus       139 ~L~~l~-~~~~~---------~~~i~~----~------------------------~~i~~L~~~L~~~~~~~~~~~~~~  180 (399)
                      +|..++ .+++.         -..+..    .                        ..++.+..++++.+.        .
T Consensus       183 aL~~i~~~~~~~~~~~l~~~~~~~Ll~~l~~~~~~~q~~il~~l~~l~~~~~~~~~~~l~~l~~~l~~~~~--------~  254 (591)
T 2vgl_B          183 ALSEISESHPNSNLLDLNPQNINKLLTALNECTEWGQIFILDCLSNYNPKDDREAQSICERVTPRLSHANS--------A  254 (591)
T ss_dssp             HHHHHTTSCCSCCSCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHTSCCCSHHHHHHHHHHHTTCSCSSTT--------H
T ss_pred             HHHHHHhhCCCccchhccHHHHHHHHHcCCCCCchHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHcCCCh--------H
Confidence            999999 44422         111111    0                        112222222222222        8


Q ss_pred             HHHHHHHHHHHHhhc---CchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhhH---------------
Q 015851          181 VIRRAADAITNLAHE---NSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENK---------------  242 (399)
Q Consensus       181 ~~~~a~~~L~~l~~~---~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~---------------  242 (399)
                      ++..+++++.++...   ++.....+ .....+.|+.++. +++.++..|+.+|..+....++..               
T Consensus       255 V~~ea~~~i~~l~~~~~~~~~~~~~~-~~~~~~~L~~L~~-~d~~vr~~aL~~l~~i~~~~p~~~~~~~~~~~~~~~d~~  332 (591)
T 2vgl_B          255 VVLSAVKVLMKFLELLPKDSDYYNML-LKKLAPPLVTLLS-GEPEVQYVALRNINLIVQKRPEILKQEIKVFFVKYNDPI  332 (591)
T ss_dssp             HHHHHHHHHHHSCCSCCBTTBSHHHH-HHHTHHHHHHHTT-SCHHHHHHHHHHHHHHHHHCCSTTTTCTTTTSCCTTSCH
T ss_pred             HHHHHHHHHHHHhhccCCCHHHHHHH-HHHHHHHHHHHhc-CCccHHHHHHHHHHHHHHhChHHHHHHHHhheeccCChH
Confidence            889999999998732   22222212 2345667776654 778999999999988885322211               


Q ss_pred             ---HH-------HHhcC----CHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHHCCCcHHHHHhhcCCChHHH
Q 015851          243 ---NQ-------IVECN----ALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQ  308 (399)
Q Consensus       243 ---~~-------~~~~~----~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~  308 (399)
                         ..       +....    +++.|...+.+.+.+++..++++++.++...+...     ...++.|+.++...+..++
T Consensus       333 ~Ir~~al~~L~~l~~~~nv~~iv~~L~~~l~~~d~~~r~~~v~aI~~la~~~~~~~-----~~~v~~Ll~ll~~~~~~v~  407 (591)
T 2vgl_B          333 YVKLEKLDIMIRLASQANIAQVLAELKEYATEVDVDFVRKAVRAIGRCAIKVEQSA-----ERCVSTLLDLIQTKVNYVV  407 (591)
T ss_dssp             HHHHHHHHHHHHTCCSSTHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHTTCHHHH-----HHHHHHHHHHHHTCCHHHH
T ss_pred             HHHHHHHHHHHHHCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhChhHH-----HHHHHHHHHHHcccchHHH
Confidence               00       01111    23334444555667777777777777775433221     2246677777777666777


Q ss_pred             HHHHHHHHHhhccChhhHHHHHhcCCHHHHHHhhC-CCCHHHHHHHHHHHHHhhccCCCCcchhHHHHH--hhccccHHH
Q 015851          309 REAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQ-SPDVQLREMSAFALGRLAQVITVSVLPAILIFI--IINECQLEV  385 (399)
Q Consensus       309 ~~a~~~L~~l~~~~~~~~~~l~~~g~v~~L~~ll~-~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~--~~~~~~~~~  385 (399)
                      .++..++.++....++.     ...+++.|+..+. ..++.++..++|+|+.++...++  .+..+..+  ...+....+
T Consensus       408 ~e~i~~l~~ii~~~p~~-----~~~~v~~L~~~l~~~~~~~~~~~~~wilGey~~~~~~--~~~~l~~l~~~~~~~~~~v  480 (591)
T 2vgl_B          408 QEAIVVIRDIFRKYPNK-----YESIIATLCENLDSLDEPDARAAMIWIVGEYAERIDN--ADELLESFLEGFHDESTQV  480 (591)
T ss_dssp             HHHHHHHHHHHHHSCSS-----CCTTHHHHHHTTTTCCSHHHHHHHHHHHHTTCTTCTT--HHHHHHHHSTTCSSSCHHH
T ss_pred             HHHHHHHHHHHHHCcch-----HHHHHHHHHHHHHhccCHHHHHHHHHHHHcccccccC--HHHHHHHHHHhhccCCHHH
Confidence            77766777665444432     2456777878776 46788888888998888876654  23333222  122334567


Q ss_pred             HHHHHhhhHhhhc
Q 015851          386 LAFVLSEMVLLFC  398 (399)
Q Consensus       386 ~~~~l~~~~~~~~  398 (399)
                      ..+++++++.++.
T Consensus       481 r~~~l~a~~Kl~~  493 (591)
T 2vgl_B          481 QLTLLTAIVKLFL  493 (591)
T ss_dssp             HHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHh
Confidence            7777777766553

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}

Probab=99.38  E-value=5.1e-11  Score=100.09  Aligned_cols=184  Identities=23%  Similarity=0.242  Sum_probs=149.7

Q ss_pred             hHHHHhhhhhcchhhhHHHHHHHHHHHHHHcCChhHHHHHHhCCChHHHHhcccCCCCcccccCCCcchHHHHHHHHHHH
Q 015851           61 AQVNVLNTTFSWLEADRAAAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFAL  140 (399)
Q Consensus        61 ~~~~~L~~~l~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~~~~~a~~~L  140 (399)
                      ...+.+.+.+  .+.++.+|..|++.|..+..          .+.++.|+++|.+++.            .+|..++++|
T Consensus        14 ~~~~~~i~~L--~~~~~~vr~~A~~~L~~~~~----------~~~~~~L~~~l~~~~~------------~vr~~a~~~L   69 (201)
T 3ltj_A           14 EKVEMYIKNL--QDDSYYVRRAAAYALGKIGD----------ERAVEPLIKALKDEDA------------WVRRAAADAL   69 (201)
T ss_dssp             HHHHHHHHHT--TCSCHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSH------------HHHHHHHHHH
T ss_pred             cchHHHHHHh--cCCCHHHHHHHHHHHHhcCC----------hhHHHHHHHHHcCCCH------------HHHHHHHHHH
Confidence            3344555555  45678899999999998754          2467889999987655            8999999999


Q ss_pred             HHhcCChhhHHHHHhcCcHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhhcCCC
Q 015851          141 GLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTD  220 (399)
Q Consensus       141 ~~l~~~~~~~~~i~~~~~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~  220 (399)
                      +.+..          .+.++.|+..|.+.+.        .++..++++|..+..           ...++.|+.++.+++
T Consensus        70 ~~~~~----------~~~~~~L~~~l~d~~~--------~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~d~~  120 (201)
T 3ltj_A           70 GQIGD----------ERAVEPLIKALKDEDG--------WVRQSAAVALGQIGD-----------ERAVEPLIKALKDED  120 (201)
T ss_dssp             HHHCC----------GGGHHHHHHHTTCSSH--------HHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSS
T ss_pred             HhhCC----------HHHHHHHHHHHcCCCH--------HHHHHHHHHHHHhCc-----------HHHHHHHHHHHcCCC
Confidence            99863          2478889999987655        899999999998762           246788999999999


Q ss_pred             HHHHHHHHHHHHHhhcCChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHHCCCcHHHHHhh
Q 015851          221 TKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLL  300 (399)
Q Consensus       221 ~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL  300 (399)
                      +.++..++++|+.+..           .+.++.|..++.++++.++..|+++|+.+.  .+.         .++.|..++
T Consensus       121 ~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~--~~~---------~~~~L~~~l  178 (201)
T 3ltj_A          121 WFVRIAAAFALGEIGD-----------ERAVEPLIKALKDEDGWVRQSAADALGEIG--GER---------VRAAMEKLA  178 (201)
T ss_dssp             HHHHHHHHHHHHHHTC-----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHC--SHH---------HHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCC-----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhC--chh---------HHHHHHHHH
Confidence            9999999999999864           247889999999999999999999999993  222         477888889


Q ss_pred             cCCChHHHHHHHHHHHHhh
Q 015851          301 SSCCSESQREAALLLGQFA  319 (399)
Q Consensus       301 ~~~~~~v~~~a~~~L~~l~  319 (399)
                      .++++.++..|..+|.++-
T Consensus       179 ~d~~~~vr~~A~~aL~~l~  197 (201)
T 3ltj_A          179 ETGTGFARKVAVNYLETHK  197 (201)
T ss_dssp             HHCCHHHHHHHHHHHHHCC
T ss_pred             hCCCHHHHHHHHHHHHHHH
Confidence            9999999999999999874

>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A

Probab=99.27  E-value=3.3e-11  Score=120.07  Aligned_cols=204  Identities=16%  Similarity=0.136  Sum_probs=156.7

Q ss_pred             hhhHHHHhhhhhcchhhhHHHHHHHHHHHHHHcCChhHHHHHHhCCChHHHH-hcccCCCCcccccCCCcchHHHHHHHH
Q 015851           59 VSAQVNVLNTTFSWLEADRAAAKRATHVLAELAKNEEVVNWIVEGGAVPALV-KHLQAPPTSEADRNLKPFEHEVEKGSA  137 (399)
Q Consensus        59 ~~~~~~~L~~~l~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~l~~L~-~lL~~~~~~~~~~~~~~~~~~~~~~a~  137 (399)
                      ...++|.|.. +  ++.++..|..|+++|.+++.++..+..+...|++..++ .+|.+++.            ++|..|+
T Consensus        33 ~~~i~Pll~~-L--~S~~~~~r~~A~~al~~l~~~~~~~~l~~~~~~v~~ll~~lL~D~~~------------~Vr~~A~   97 (684)
T 4gmo_A           33 EDKILPVLKD-L--KSPDAKSRTTAAGAIANIVQDAKCRKLLLREQVVHIVLTETLTDNNI------------DSRAAGW   97 (684)
T ss_dssp             HHTTHHHHHH-H--SSSCCSHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHTTTTCSCH------------HHHHHHH
T ss_pred             hhhHHHHHHH-c--CCCCHHHHHHHHHHHHHHHcCcHHHHHHHHcCCHHHHHHHHcCCCCH------------HHHHHHH
Confidence            3456777665 3  45677789999999999999999999999999998765 56777665            8999999


Q ss_pred             HHHHHhc--CChhhHHHHHhcCcHHHHHHHHhccccCc---------c----ccccHHHHHHHHHHHHHHhhcCchhHHH
Q 015851          138 FALGLLA--VKPEHQQLIVDNGALSHLVNLLKRHMDSN---------C----SRAVNSVIRRAADAITNLAHENSSIKTR  202 (399)
Q Consensus       138 ~~L~~l~--~~~~~~~~i~~~~~i~~L~~~L~~~~~~~---------~----~~~~~~~~~~a~~~L~~l~~~~~~~~~~  202 (399)
                      ++|.||+  .+++.+..+...|++++|..++.......         .    .+..+++...++.+|++||..+......
T Consensus        98 gaLrnL~~~~g~d~~~~l~~~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~  177 (684)
T 4gmo_A           98 EILKVLAQEEEADFCVHLYRLDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEA  177 (684)
T ss_dssp             HHHHHHHHHSCHHHHHHHHHTTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHH
T ss_pred             HHHHHHHhhcCchHHHHHHHcChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHH
Confidence            9999999  57899999999999999999987532110         0    0012356678899999999888777777


Q ss_pred             HHhcCChHHHHHhhcCC---CHHHHHHHHHHHHHhhcCChhhHHHHHhcCCHHHHHHhh--cCCCHHHHHHHHHHHHHhh
Q 015851          203 VRMEGGIPPLVELLEFT---DTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILML--RSEDSAIHYEAVGVIGNLV  277 (399)
Q Consensus       203 ~~~~~~i~~L~~ll~~~---~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~L~~ll--~~~~~~v~~~a~~~L~~l~  277 (399)
                      +...++++.++..|.+.   ..+++..|+.+|.+++.++++....+.+.+....+..++  ...+...+..++++|.|+.
T Consensus       178 v~~~~~l~~l~~~L~~~~~~~~~v~~~a~~~L~~ls~dn~~~~~~i~~~~~~~~~~~ll~~~~~~~~~~~la~giL~Ni~  257 (684)
T 4gmo_A          178 VATKQTILRLLFRLISADIAPQDIYEEAISCLTTLSEDNLKVGQAITDDQETHVYDVLLKLATGTDPRAVMACGVLHNVF  257 (684)
T ss_dssp             HHTCHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHTTCHHHHHHHHTCCSSCHHHHHHHHHHSSCTTHHHHHHHHHHHH
T ss_pred             HHhcccHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhccCHHHHHHHHhcchHHHHHHHHHHhcCCcHHHHHHHHHHHhHh
Confidence            88888999999988543   368999999999999998888888888876543322222  2233445777889999874

>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A

Probab=99.25  E-value=4.9e-10  Score=115.26  Aligned_cols=284  Identities=11%  Similarity=0.067  Sum_probs=189.1

Q ss_pred             hhhhhHHHHhhhhhcchhhhHHHHHHHHHHHHHHcCC--hhHHHHHHhCCChHHHHhcccCCCCcccccCCCcchHHHHH
Q 015851           57 SEVSAQVNVLNTTFSWLEADRAAAKRATHVLAELAKN--EEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEK  134 (399)
Q Consensus        57 ~~~~~~~~~L~~~l~~~~~~~~~~~~a~~~L~~l~~~--~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~~~~  134 (399)
                      ..++.+++.|...+...+.++.+|..++.+|..++..  ++.... .-..+++.+.+.+.+++.          ++++|.
T Consensus       124 ~~w~~ll~~l~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~-~~~~ll~~l~~~l~~~~~----------~~~vr~  192 (876)
T 1qgr_A          124 NQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQD-KSNEILTAIIQGMRKEEP----------SNNVKL  192 (876)
T ss_dssp             TCCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCHHHHGG-GHHHHHHHHHHHHSTTCS----------CHHHHH
T ss_pred             cccHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCHhhHHh-HHHHHHHHHHHhhcCCCC----------CHHHHH
Confidence            3467788888887742211677899999999999863  322110 112456777777776532          127899


Q ss_pred             HHHHHHHHhcC-ChhhH-HHHHhcCcHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHH
Q 015851          135 GSAFALGLLAV-KPEHQ-QLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPL  212 (399)
Q Consensus       135 ~a~~~L~~l~~-~~~~~-~~i~~~~~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L  212 (399)
                      .++++|.++.. ....- ........++.+...+.+.+.        +++..++.+|..++...+..-.......+++.+
T Consensus       193 ~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~--------~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~~~  264 (876)
T 1qgr_A          193 AATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDT--------RVRVAALQNLVKIMSLYYQYMETYMGPALFAIT  264 (876)
T ss_dssp             HHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHTTCSSH--------HHHHHHHHHHHHHHHHSGGGCHHHHTTTHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHcCCCCH--------HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence            99999999873 22111 011111245555555543333        889999999999997555432222333678888


Q ss_pred             HHhhcCCCHHHHHHHHHHHHHhhcCChh---------------------hHHHHHhcCCHHHHHHhhcC-------CCHH
Q 015851          213 VELLEFTDTKVQRAAAGALRTLAFKNDE---------------------NKNQIVECNALPTLILMLRS-------EDSA  264 (399)
Q Consensus       213 ~~ll~~~~~~v~~~a~~~L~~L~~~~~~---------------------~~~~~~~~~~~~~L~~ll~~-------~~~~  264 (399)
                      +..+.+.++.++..++.++.+++.....                     ...... ...++.++..+..       ++..
T Consensus       265 ~~~~~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ll~~ll~~l~~~~~d~~~~~~~  343 (876)
T 1qgr_A          265 IEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGAL-QYLVPILTQTLTKQDENDDDDDWN  343 (876)
T ss_dssp             HHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHH-HHHHHHHHHHTTCCCSSCCTTCCC
T ss_pred             HHHhcCCchHHHHHHHHHHHHHHHHHHhHhhhhccccccCCCccchhHHHHHHHH-HHHhHHHHHHhhcccccccccccH
Confidence            8888888899999999999988853110                     000011 2346677777752       3457


Q ss_pred             HHHHHHHHHHHhhcCChhHHHHHHHCCCcHHHHHhhcCCChHHHHHHHHHHHHhhccCh-hhHHHHHhcCCHHHHHHhhC
Q 015851          265 IHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDS-DCKVHIVQRGAVRPLIEMLQ  343 (399)
Q Consensus       265 v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~-~~~~~l~~~g~v~~L~~ll~  343 (399)
                      +|..|..+|..++...+..   ++ ..+++.+...+.++++.+|..|+++++.++.+.. +...... ..+++.++..+.
T Consensus       344 ~r~~a~~~l~~l~~~~~~~---~~-~~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~-~~~l~~l~~~l~  418 (876)
T 1qgr_A          344 PCKAAGVCLMLLATCCEDD---IV-PHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLV-IQAMPTLIELMK  418 (876)
T ss_dssp             HHHHHHHHHHHHHHHHGGG---GH-HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHH-HHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHCcHh---hH-HHHHHHHHHHccCCChHHHHHHHHHHHHHHcCCCHHHHHHHH-HHHHHHHHHHhC
Confidence            8999999999998542221   11 2356667777888899999999999999986543 3222222 347899999999


Q ss_pred             CCCHHHHHHHHHHHHHhhccCC
Q 015851          344 SPDVQLREMSAFALGRLAQVIT  365 (399)
Q Consensus       344 ~~~~~v~~~a~~~L~~l~~~~~  365 (399)
                      ++++.+|..|+++|.+++...+
T Consensus       419 d~~~~vr~~a~~~l~~~~~~~~  440 (876)
T 1qgr_A          419 DPSVVVRDTAAWTVGRICELLP  440 (876)
T ss_dssp             CSSHHHHHHHHHHHHHHHHHCG
T ss_pred             CCCHHHHHHHHHHHHHHHHhCc
Confidence            9999999999999999998754

>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1

Probab=99.22  E-value=3.6e-10  Score=111.42  Aligned_cols=273  Identities=14%  Similarity=0.103  Sum_probs=189.4

Q ss_pred             hhHHHHhhhhhcchhhhHHHHHHHHHHHHHHcC-ChhHHHHHHhCCChHHHHhcccCCCCcccccCCCcchHHHHHHHHH
Q 015851           60 SAQVNVLNTTFSWLEADRAAAKRATHVLAELAK-NEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAF  138 (399)
Q Consensus        60 ~~~~~~L~~~l~~~~~~~~~~~~a~~~L~~l~~-~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~~~~~a~~  138 (399)
                      +.+++.+...+  .+.++.+|..|+.++.++.. +|+...     +.++.+..+|.+.++            .++..|+.
T Consensus       141 ~~l~~~l~~~L--~~~~~~VRk~A~~al~~l~~~~p~~v~-----~~~~~l~~lL~D~d~------------~V~~~Al~  201 (618)
T 1w63_A          141 RDLAGEVEKLL--KTSNSYLRKKAALCAVHVIRKVPELME-----MFLPATKNLLNEKNH------------GVLHTSVV  201 (618)
T ss_dssp             HHHHHHHHHHH--HSCCHHHHHHHHHHHHHHHHHCGGGGG-----GGGGGTTTSTTCCCH------------HHHHHHHH
T ss_pred             HHHHHHHHHHH--cCCCHHHHHHHHHHHHHHHHHChHHHH-----HHHHHHHHHhCCCCH------------hHHHHHHH
Confidence            34456666666  45678899999999999887 465432     677888888887665            78889999


Q ss_pred             HHHHhc-CChhhHHHHHhcCcHHHHHHHHhccccC---ccc----cccHHHHHHHHHHHHHHhhcCchhHHHHHhcCChH
Q 015851          139 ALGLLA-VKPEHQQLIVDNGALSHLVNLLKRHMDS---NCS----RAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIP  210 (399)
Q Consensus       139 ~L~~l~-~~~~~~~~i~~~~~i~~L~~~L~~~~~~---~~~----~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~  210 (399)
                      +|..++ .+++....+.  ..++.++..|.+....   ...    ....-.+..++.+|..++..++...     ...++
T Consensus       202 ~L~~i~~~~~~~~~~~~--~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~~~~~~~~-----~~~~~  274 (618)
T 1w63_A          202 LLTEMCERSPDMLAHFR--KLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGRNDDDSS-----EAMND  274 (618)
T ss_dssp             HHHHHCCSHHHHHHHHH--TTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHTTTCHHHH-----HTTHH
T ss_pred             HHHHHHHhChHHHHHHH--HHHHHHHHHHHHHHcCCCCccccccCCCCChHHHHHHHHHHHhCCCCHHHH-----HHHHH
Confidence            999999 4454333332  4788888888752000   000    0001567778899999997655422     23445


Q ss_pred             HHHHhhc------CCCHHHHHHHHHHHHHhhcCChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHH
Q 015851          211 PLVELLE------FTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIK  284 (399)
Q Consensus       211 ~L~~ll~------~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~  284 (399)
                      .|..++.      +.+..+...+++++..+.. .+...    . .+++.|..++.+++++++..|+.+|..++...+.  
T Consensus       275 ~L~~l~~~~~~~~~~~~aV~~ea~~~i~~l~~-~~~l~----~-~a~~~L~~~L~~~d~~vr~~aL~~L~~i~~~~p~--  346 (618)
T 1w63_A          275 ILAQVATNTETSKNVGNAILYETVLTIMDIKS-ESGLR----V-LAINILGRFLLNNDKNIRYVALTSLLKTVQTDHN--  346 (618)
T ss_dssp             HHHHHHHTSCCSSTHHHHHHHHHHHHHHHSCC-CHHHH----H-HHHHHHHHHHTCSSTTTHHHHHHHHHHHHHHHHH--
T ss_pred             HHHHHHhccccccchHHHHHHHHHHHHHhcCC-CHHHH----H-HHHHHHHHHHhCCCCchHHHHHHHHHHHHhhCHH--
Confidence            5555542      2346889999999998764 33221    1 3567888889989999999999999999854332  


Q ss_pred             HHHHHCCCcHHHHHhhcCCChHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhccC
Q 015851          285 KEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQVI  364 (399)
Q Consensus       285 ~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~  364 (399)
                        ++ ......++..+.+++..++..|+.+|..++.  +.+...+     ++.|...+.+.+.+++..++.+|+.++...
T Consensus       347 --~~-~~~~~~i~~~l~d~d~~Ir~~alelL~~l~~--~~nv~~i-----v~eL~~~l~~~d~e~r~~~v~~I~~la~k~  416 (618)
T 1w63_A          347 --AV-QRHRSTIVDCLKDLDVSIKRRAMELSFALVN--GNNIRGM-----MKELLYFLDSCEPEFKADCASGIFLAAEKY  416 (618)
T ss_dssp             --HH-GGGHHHHHHGGGSSCHHHHHHHHHHHHHHCC--SSSTHHH-----HHHHHHHHHHCCHHHHHHHHHHHHHHHHSS
T ss_pred             --HH-HHHHHHHHHHccCCChhHHHHHHHHHHHHcc--cccHHHH-----HHHHHHHHHhCCHHHHHHHHHHHHHHHHHh
Confidence              22 2356788889999999999999999999974  3333333     466777887789999999999999999875


Q ss_pred             CCC---cchhHHHHH
Q 015851          365 TVS---VLPAILIFI  376 (399)
Q Consensus       365 ~~~---~~~~~~~~~  376 (399)
                      +..   +++.++..+
T Consensus       417 ~~~~~~~v~~ll~lL  431 (618)
T 1w63_A          417 APSKRWHIDTIMRVL  431 (618)
T ss_dssp             CCCHHHHHHHHHHHH
T ss_pred             CccHHHHHHHHHHHH
Confidence            443   455555444

>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B

Probab=99.22  E-value=2.8e-10  Score=111.73  Aligned_cols=253  Identities=17%  Similarity=0.136  Sum_probs=182.2

Q ss_pred             hhhhHHHHHHHHHHHHHHcC-ChhHHHHHHhCCChHHHHhcccCCCCcccccCCCcchHHHHHHHHHHHHHhcCChhhHH
Q 015851           73 LEADRAAAKRATHVLAELAK-NEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQ  151 (399)
Q Consensus        73 ~~~~~~~~~~a~~~L~~l~~-~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~  151 (399)
                      ++.+...|.-+...+..++. +++..     .-+++.+.+-|.++++            .+|..|+.+|+++. .++..+
T Consensus        59 ~s~~~~~Krl~yl~l~~~~~~~~e~~-----~l~~n~l~kdL~~~n~------------~ir~~AL~~L~~i~-~~~~~~  120 (591)
T 2vgl_B           59 QTDNLELKKLVYLYLMNYAKSQPDMA-----IMAVNSFVKDCEDPNP------------LIRALAVRTMGCIR-VDKITE  120 (591)
T ss_dssp             SSSCHHHHHHHHHHHHHHHHHSHHHH-----HTTHHHHGGGSSSSSH------------HHHHHHHHHHHTCC-SGGGHH
T ss_pred             CCCCHHHHHHHHHHHHHHcccCchHH-----HHHHHHHHHHcCCCCH------------HHHHHHHHHHHcCC-hHHHHH
Confidence            45667777777777777766 35542     2346777777877655            78889999999987 444433


Q ss_pred             HHHhcCcHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHH
Q 015851          152 LIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGAL  231 (399)
Q Consensus       152 ~i~~~~~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L  231 (399)
                      .     .++.+.+++.+.+.        .++..|+.++..+...++..   +...++++.+..+|.++++.++..|+.+|
T Consensus       121 ~-----l~~~l~~~L~d~~~--------~VRk~A~~al~~i~~~~p~~---~~~~~~~~~l~~lL~d~d~~V~~~A~~aL  184 (591)
T 2vgl_B          121 Y-----LCEPLRKCLKDEDP--------YVRKTAAVCVAKLHDINAQM---VEDQGFLDSLRDLIADSNPMVVANAVAAL  184 (591)
T ss_dssp             H-----HHHHHHHHSSCSCH--------HHHHHHHHHHHHHHHSSCCC---HHHHHHHHHHHHTTSCSCHHHHHHHHHHH
T ss_pred             H-----HHHHHHHHcCCCCh--------HHHHHHHHHHHHHHhhChhh---cccccHHHHHHHHhCCCChhHHHHHHHHH
Confidence            3     35678888876554        89999999999999866642   23356789999999999999999999999


Q ss_pred             HHhhcCChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHHCCCcHHHHHhhcCCChHHHHHH
Q 015851          232 RTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREA  311 (399)
Q Consensus       232 ~~L~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a  311 (399)
                      ..++...++........+.++.|+..+.+.++-.+...+.+++.++..++...     ..+++.+..++++.++.++.+|
T Consensus       185 ~~i~~~~~~~~~~~l~~~~~~~Ll~~l~~~~~~~q~~il~~l~~l~~~~~~~~-----~~~l~~l~~~l~~~~~~V~~ea  259 (591)
T 2vgl_B          185 SEISESHPNSNLLDLNPQNINKLLTALNECTEWGQIFILDCLSNYNPKDDREA-----QSICERVTPRLSHANSAVVLSA  259 (591)
T ss_dssp             HHHTTSCCSCCSCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHTSCCCSHHHH-----HHHHHHHTTCSCSSTTHHHHHH
T ss_pred             HHHHhhCCCccchhccHHHHHHHHHcCCCCCchHHHHHHHHHHHhCCCChHHH-----HHHHHHHHHHHcCCChHHHHHH
Confidence            99997544321000112346667777777888888888999988875433322     2357788888999999999999


Q ss_pred             HHHHHHhhcc---ChhhHHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhccCCC
Q 015851          312 ALLLGQFAAT---DSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQVITV  366 (399)
Q Consensus       312 ~~~L~~l~~~---~~~~~~~l~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~  366 (399)
                      ++++..+...   +++..+.+. ..+.+.|+.++. +++.+|..|+.+|..++...+.
T Consensus       260 ~~~i~~l~~~~~~~~~~~~~~~-~~~~~~L~~L~~-~d~~vr~~aL~~l~~i~~~~p~  315 (591)
T 2vgl_B          260 VKVLMKFLELLPKDSDYYNMLL-KKLAPPLVTLLS-GEPEVQYVALRNINLIVQKRPE  315 (591)
T ss_dssp             HHHHHHSCCSCCBTTBSHHHHH-HHTHHHHHHHTT-SCHHHHHHHHHHHHHHHHHCCS
T ss_pred             HHHHHHHhhccCCCHHHHHHHH-HHHHHHHHHHhc-CCccHHHHHHHHHHHHHHhChH
Confidence            9999998642   334433332 335677776664 7889999999999999876654

>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A

Probab=99.22  E-value=3.7e-10  Score=116.15  Aligned_cols=278  Identities=17%  Similarity=0.159  Sum_probs=186.0

Q ss_pred             hhhhHHHHhhhhhcchhhhHHHHHHHHHHHHHHcCC-hhHH-HHHHhCCChHHHHhcccCCCCcccccCCCcchHHHHHH
Q 015851           58 EVSAQVNVLNTTFSWLEADRAAAKRATHVLAELAKN-EEVV-NWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKG  135 (399)
Q Consensus        58 ~~~~~~~~L~~~l~~~~~~~~~~~~a~~~L~~l~~~-~~~~-~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~~~~~  135 (399)
                      ..+.+++.+...+...+.+..+|..|+.+|..+... .... .......+++.+..++.+.+.            ++|..
T Consensus       169 ~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~------------~vr~~  236 (876)
T 1qgr_A          169 KSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDT------------RVRVA  236 (876)
T ss_dssp             GHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHTTCSSH------------HHHHH
T ss_pred             HHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHcCCCCH------------HHHHH
Confidence            445666666666643222577899999999998763 2211 111111256677777655443            89999


Q ss_pred             HHHHHHHhc-CChhhHHHHHhcCcHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhhcCchh---------------
Q 015851          136 SAFALGLLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSI---------------  199 (399)
Q Consensus       136 a~~~L~~l~-~~~~~~~~i~~~~~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~---------------  199 (399)
                      ++.+|..++ ..+..-...+....++.++..+.+.++        +++..++..+..++......               
T Consensus       237 a~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~--------~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~  308 (876)
T 1qgr_A          237 ALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDID--------EVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPE  308 (876)
T ss_dssp             HHHHHHHHHHHSGGGCHHHHTTTHHHHHHHHHTCSSH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCS
T ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcCCch--------HHHHHHHHHHHHHHHHHHhHhhhhccccccCCCcc
Confidence            999999998 444432223333577777777765444        78888998888887532100               


Q ss_pred             ---HHHH--HhcCChHHHHHhhc-------CCCHHHHHHHHHHHHHhhcCChhhHHHHHhcCCHHHHHHhhcCCCHHHHH
Q 015851          200 ---KTRV--RMEGGIPPLVELLE-------FTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHY  267 (399)
Q Consensus       200 ---~~~~--~~~~~i~~L~~ll~-------~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~  267 (399)
                         ....  .....++.++..+.       ++++.+|..+..+|..++...++   .+.. .+++.+...+.+++..+|.
T Consensus       309 ~~~~~~~~~~~~~ll~~ll~~l~~~~~d~~~~~~~~r~~a~~~l~~l~~~~~~---~~~~-~~l~~l~~~l~~~~~~~r~  384 (876)
T 1qgr_A          309 HTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCED---DIVP-HVLPFIKEHIKNPDWRYRD  384 (876)
T ss_dssp             SCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHGG---GGHH-HHHHHHHHHTTCSSHHHHH
T ss_pred             chhHHHHHHHHHHHhHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHCcH---hhHH-HHHHHHHHHccCCChHHHH
Confidence               0000  11234667777774       23467999999999999863222   1222 3567777788888999999


Q ss_pred             HHHHHHHHhhcCCh-hHHHHHHHCCCcHHHHHhhcCCChHHHHHHHHHHHHhhccChhh---HHHHHhcCCHHHHHHhhC
Q 015851          268 EAVGVIGNLVHSSP-NIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDC---KVHIVQRGAVRPLIEMLQ  343 (399)
Q Consensus       268 ~a~~~L~~l~~~~~-~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~---~~~l~~~g~v~~L~~ll~  343 (399)
                      .|+++++.++.+.. ..... .-..+++.++..+.++++.++..|+++|++++...+..   ...+  ..+++.|+..+.
T Consensus       385 ~a~~~l~~i~~~~~~~~~~~-~~~~~l~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~l--~~~l~~l~~~l~  461 (876)
T 1qgr_A          385 AAVMAFGCILEGPEPSQLKP-LVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYL--APLLQCLIEGLS  461 (876)
T ss_dssp             HHHHHHHHTSSSSCHHHHHH-HHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTSSTTTH--HHHHHHHHHHTT
T ss_pred             HHHHHHHHHHcCCCHHHHHH-HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCchhcccHHHH--HHHHHHHHHHHc
Confidence            99999999986543 22222 22457889999999999999999999999998653321   1111  245778888887


Q ss_pred             CCCHHHHHHHHHHHHHhhcc
Q 015851          344 SPDVQLREMSAFALGRLAQV  363 (399)
Q Consensus       344 ~~~~~v~~~a~~~L~~l~~~  363 (399)
                      ++ +.++..++++|.+++..
T Consensus       462 ~~-~~v~~~a~~al~~l~~~  480 (876)
T 1qgr_A          462 AE-PRVASNVCWAFSSLAEA  480 (876)
T ss_dssp             SC-HHHHHHHHHHHHHHHHH
T ss_pred             CC-HHHHHHHHHHHHHHHHH
Confidence            74 89999999999999976

>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A

Probab=99.20  E-value=8.2e-11  Score=120.84  Aligned_cols=278  Identities=14%  Similarity=0.144  Sum_probs=187.1

Q ss_pred             hhhHHHHhhhhhcchhhhHHHHHHHHHHHHHHcCCh--hHHHHHHhCCChHHHHhcccCCCCcccccCCCcchHHHHHHH
Q 015851           59 VSAQVNVLNTTFSWLEADRAAAKRATHVLAELAKNE--EVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGS  136 (399)
Q Consensus        59 ~~~~~~~L~~~l~~~~~~~~~~~~a~~~L~~l~~~~--~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~~~~~a  136 (399)
                      .+.+++.+...+  .+.+...|..|+++++.++.+.  +....... .+++.++..+.+++.            .+|..+
T Consensus       367 ~~~l~~~l~~~l--~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~-~il~~l~~~l~d~~~------------~vr~~a  431 (861)
T 2bpt_A          367 LEPVLEFVEQNI--TADNWRNREAAVMAFGSIMDGPDKVQRTYYVH-QALPSILNLMNDQSL------------QVKETT  431 (861)
T ss_dssp             HHHHHHHHHHHT--TCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHH-HHHHHHHHGGGCSCH------------HHHHHH
T ss_pred             HHHHHHHHHHHc--CCCChhHHHHHHHHHHHHHcCCCHHHHHHHHH-HHHHHHHHHcCCCcH------------HHHHHH
Confidence            344555555555  3456778999999999999852  33322222 478888898887654            789999


Q ss_pred             HHHHHHhcCC--hhh--HHHHHhcCcHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhhcC-----chhHHHHHhcC
Q 015851          137 AFALGLLAVK--PEH--QQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHEN-----SSIKTRVRMEG  207 (399)
Q Consensus       137 ~~~L~~l~~~--~~~--~~~i~~~~~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~-----~~~~~~~~~~~  207 (399)
                      +++|+.++..  +..  ...+  ...++.++..+.+. .        .++..++++|.+++...     ......+  ..
T Consensus       432 ~~~l~~l~~~~~~~~~~~~~~--~~~l~~l~~~l~~~-~--------~v~~~a~~al~~l~~~~~~~~~~~l~~~~--~~  498 (861)
T 2bpt_A          432 AWCIGRIADSVAESIDPQQHL--PGVVQACLIGLQDH-P--------KVATNCSWTIINLVEQLAEATPSPIYNFY--PA  498 (861)
T ss_dssp             HHHHHHHHHHHGGGSCTTTTH--HHHHHHHHHHHTSC-H--------HHHHHHHHHHHHHHHHHSSSSSCGGGGGH--HH
T ss_pred             HHHHHHHHHHhhhhcCCHHHH--HHHHHHHHHHhccC-h--------HHHHHHHHHHHHHHHhcccccchhhHHHH--HH
Confidence            9999999832  110  1111  12567777777653 2        89999999999998632     1121111  34


Q ss_pred             ChHHHHHhhcCCC--HHHHHHHHHHHHHhhcCChhhHHHHHhcCCHHHHHHhhcC---------------CCHHHHHHHH
Q 015851          208 GIPPLVELLEFTD--TKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRS---------------EDSAIHYEAV  270 (399)
Q Consensus       208 ~i~~L~~ll~~~~--~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~L~~ll~~---------------~~~~v~~~a~  270 (399)
                      .++.++..+.+.+  +.++..++.+++.++...+........ ..+|.++..+..               ....++..++
T Consensus       499 il~~L~~~l~~~d~~~~vr~~a~~al~~l~~~~~~~~~~~~~-~l~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~  577 (861)
T 2bpt_A          499 LVDGLIGAANRIDNEFNARASAFSALTTMVEYATDTVAETSA-SISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNIL  577 (861)
T ss_dssp             HHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHCCGGGHHHHH-HHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCcCcchHHHHHHHHHHHHHHHHcchhhHHHHH-HHHHHHHHHHHHHHhhhcccCChhhHHHHHHHHHHHH
Confidence            5677888887544  789999999999999754443333333 256666666542               1346788999


Q ss_pred             HHHHHhhcCChhHHHHHHHCCCcHHHHHhhcCCCh-HHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHhhCCCCHHH
Q 015851          271 GVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCS-ESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQL  349 (399)
Q Consensus       271 ~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~-~v~~~a~~~L~~l~~~~~~~~~~l~~~g~v~~L~~ll~~~~~~v  349 (399)
                      .+|++++...+...... -..+++.++..++..+. .++..++.+++.++.........+.. .++|.+...+.++++.+
T Consensus       578 ~~l~~l~~~~~~~~~~~-~~~l~~~l~~~l~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~l~-~i~~~l~~~l~~~~~~v  655 (861)
T 2bpt_A          578 TVLAAVIRKSPSSVEPV-ADMLMGLFFRLLEKKDSAFIEDDVFYAISALAASLGKGFEKYLE-TFSPYLLKALNQVDSPV  655 (861)
T ss_dssp             HHHHHHHHHCGGGTGGG-HHHHHHHHHHHHHSTTGGGTHHHHHHHHHHHHHHHGGGGHHHHH-HHHHHHHHHHHCTTSHH
T ss_pred             HHHHHHHHHhhhhhHHH-HHHHHHHHHHHHccCCCCcHHHHHHHHHHHHHHHHhhhHHHHHH-HHHHHHHHHhccccHHH
Confidence            99999986443321111 12457777888887766 88999999999988543333222222 36888999998888999


Q ss_pred             HHHHHHHHHHhhccCCCC
Q 015851          350 REMSAFALGRLAQVITVS  367 (399)
Q Consensus       350 ~~~a~~~L~~l~~~~~~~  367 (399)
                      +..+..++..++...+..
T Consensus       656 r~~a~~~l~~l~~~~~~~  673 (861)
T 2bpt_A          656 SITAVGFIADISNSLEED  673 (861)
T ss_dssp             HHHHHHHHHHHHHHTGGG
T ss_pred             HHHHHHHHHHHHHHhchh
Confidence            999999999999877654

>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A

Probab=99.19  E-value=5.5e-09  Score=107.20  Aligned_cols=280  Identities=11%  Similarity=0.108  Sum_probs=185.1

Q ss_pred             hhhhHHHHhhhhhcchhh-hHHHHHHHHHHHHHHcCC--hhHH--HHHHhCCChHHHHhcccCCCCcccccCCCcchHHH
Q 015851           58 EVSAQVNVLNTTFSWLEA-DRAAAKRATHVLAELAKN--EEVV--NWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEV  132 (399)
Q Consensus        58 ~~~~~~~~L~~~l~~~~~-~~~~~~~a~~~L~~l~~~--~~~~--~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~~  132 (399)
                      .++.+++.|...+.  +. ++..+..++.++..++..  ++.+  .. ....+++.+...+.++..          ++++
T Consensus       131 ~w~~ll~~L~~~l~--~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~-~~~~ll~~l~~~l~~~~~----------~~~v  197 (861)
T 2bpt_A          131 AWPELMKIMVDNTG--AEQPENVKRASLLALGYMCESADPQSQALVS-SSNNILIAIVQGAQSTET----------SKAV  197 (861)
T ss_dssp             CCHHHHHHHHHHTS--TTSCHHHHHHHHHHHHHHHHTSSTTSSTTGG-GHHHHHHHHHHHHSTTCC----------CHHH
T ss_pred             ccHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHHHcCChhhhHHHH-HHHHHHHHHHHhhcCCCC----------CHHH
Confidence            45678888887773  34 677899999999999874  2211  00 012346667777776521          1389


Q ss_pred             HHHHHHHHHHhcC-ChhhH-HHHHhcCcHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhhcCchhHHHHHhcCChH
Q 015851          133 EKGSAFALGLLAV-KPEHQ-QLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIP  210 (399)
Q Consensus       133 ~~~a~~~L~~l~~-~~~~~-~~i~~~~~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~  210 (399)
                      |..++.+|..+.. -...- ........++.+...+.+.+.        +++..++.+|..++...+..-........++
T Consensus       198 r~~al~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~--------~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~  269 (861)
T 2bpt_A          198 RLAALNALADSLIFIKNNMEREGERNYLMQVVCEATQAEDI--------EVQAAAFGCLCKIMSKYYTFMKPYMEQALYA  269 (861)
T ss_dssp             HHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHHTCSCH--------HHHHHHHHHHHHHHHHHGGGCHHHHHHTHHH
T ss_pred             HHHHHHHHHHHHHHHHHHccChhHHHHHHHHHHHHhcCCCH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999998752 11110 000011245555555544433        8899999999999864432211122225677


Q ss_pred             HHHHhhcCCCHHHHHHHHHHHHHhhcCChh-----------------hHHHHHhcCCHHHHHHhhcCC-------CHHHH
Q 015851          211 PLVELLEFTDTKVQRAAAGALRTLAFKNDE-----------------NKNQIVECNALPTLILMLRSE-------DSAIH  266 (399)
Q Consensus       211 ~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~-----------------~~~~~~~~~~~~~L~~ll~~~-------~~~v~  266 (399)
                      .+...+.+.++.++..++.++..++.....                 ...... ..++|.++..+...       +..++
T Consensus       270 ~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~il~~ll~~l~~~~~d~~d~~~~~r  348 (861)
T 2bpt_A          270 LTIATMKSPNDKVASMTVEFWSTICEEEIDIAYELAQFPQSPLQSYNFALSSI-KDVVPNLLNLLTRQNEDPEDDDWNVS  348 (861)
T ss_dssp             HHHHHTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCSCCCCCHHHHHH-HHHHHHHHHHTTCCCCC-CCCCCHHH
T ss_pred             HHHHHHcCCcHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhhHHHHHHHH-HHHHHHHHHHHHhcccccccccCcHH
Confidence            778888888999999999999998863111                 111112 34677888877642       34799


Q ss_pred             HHHHHHHHHhhcCChhHHHHHHHCCCcHHHHHhhcCCChHHHHHHHHHHHHhhccCh-hhHHHHHhcCCHHHHHHhhCCC
Q 015851          267 YEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDS-DCKVHIVQRGAVRPLIEMLQSP  345 (399)
Q Consensus       267 ~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~-~~~~~l~~~g~v~~L~~ll~~~  345 (399)
                      ..+..+|..++...+....    ..+++.+...+.+.++.++..|+++++.++.+.. +....... .+++.|+..+.++
T Consensus       349 ~~a~~~L~~l~~~~~~~~~----~~l~~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~-~il~~l~~~l~d~  423 (861)
T 2bpt_A          349 MSAGACLQLFAQNCGNHIL----EPVLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYVH-QALPSILNLMNDQ  423 (861)
T ss_dssp             HHHHHHHHHHHHHHGGGGH----HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHH-HHHHHHHHGGGCS
T ss_pred             HHHHHHHHHHHHHccHhHH----HHHHHHHHHHcCCCChhHHHHHHHHHHHHHcCCCHHHHHHHHH-HHHHHHHHHcCCC
Confidence            9999999999853221111    1246677777788889999999999999986532 33333332 4788999999999


Q ss_pred             CHHHHHHHHHHHHHhhccC
Q 015851          346 DVQLREMSAFALGRLAQVI  364 (399)
Q Consensus       346 ~~~v~~~a~~~L~~l~~~~  364 (399)
                      ++.+|..++++++.++...
T Consensus       424 ~~~vr~~a~~~l~~l~~~~  442 (861)
T 2bpt_A          424 SLQVKETTAWCIGRIADSV  442 (861)
T ss_dssp             CHHHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHHh
Confidence            9999999999999999763

>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A

Probab=99.18  E-value=1.6e-10  Score=115.06  Aligned_cols=194  Identities=13%  Similarity=0.117  Sum_probs=150.5

Q ss_pred             hHHHHhcccCCCCcccccCCCcchHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHH-HhccccCccccccHHHHHH
Q 015851          106 VPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNL-LKRHMDSNCSRAVNSVIRR  184 (399)
Q Consensus       106 l~~L~~lL~~~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~~~i~~L~~~-L~~~~~~~~~~~~~~~~~~  184 (399)
                      +.++++.|++++.            +.|..|+++|++|+.++..+..+...+++..++.- |.+.+.        +++..
T Consensus        36 i~Pll~~L~S~~~------------~~r~~A~~al~~l~~~~~~~~l~~~~~~v~~ll~~lL~D~~~--------~Vr~~   95 (684)
T 4gmo_A           36 ILPVLKDLKSPDA------------KSRTTAAGAIANIVQDAKCRKLLLREQVVHIVLTETLTDNNI--------DSRAA   95 (684)
T ss_dssp             THHHHHHHSSSCC------------SHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHTTTTCSCH--------HHHHH
T ss_pred             HHHHHHHcCCCCH------------HHHHHHHHHHHHHHcCcHHHHHHHHcCCHHHHHHHHcCCCCH--------HHHHH
Confidence            4456677888777            67889999999999999999999999999887664 555544        99999


Q ss_pred             HHHHHHHHhhc-CchhHHHHHhcCChHHHHHhhcCCC---------------------HHHHHHHHHHHHHhhcCChhhH
Q 015851          185 AADAITNLAHE-NSSIKTRVRMEGGIPPLVELLEFTD---------------------TKVQRAAAGALRTLAFKNDENK  242 (399)
Q Consensus       185 a~~~L~~l~~~-~~~~~~~~~~~~~i~~L~~ll~~~~---------------------~~v~~~a~~~L~~L~~~~~~~~  242 (399)
                      ++++|.||+.+ .+.+...+...|+++.|..++....                     ..+...++.+|++|+.++.+..
T Consensus        96 A~gaLrnL~~~~g~d~~~~l~~~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~  175 (684)
T 4gmo_A           96 GWEILKVLAQEEEADFCVHLYRLDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIH  175 (684)
T ss_dssp             HHHHHHHHHHHSCHHHHHHHHHTTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHH
T ss_pred             HHHHHHHHHhhcCchHHHHHHHcChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHH
Confidence            99999999965 4566777888899999998875311                     2345678899999998778888


Q ss_pred             HHHHhcCCHHHHHHhhcC---CCHHHHHHHHHHHHHhhcCChhHHHHHHHCCCcHHHHHh--hcCCChHHHHHHHHHHHH
Q 015851          243 NQIVECNALPTLILMLRS---EDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGL--LSSCCSESQREAALLLGQ  317 (399)
Q Consensus       243 ~~~~~~~~~~~L~~ll~~---~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~l--L~~~~~~v~~~a~~~L~~  317 (399)
                      ..+...+.++.|+..|.+   ...+++..|+.+|.+++..++.....+.+.+....+..+  +...+...+..++++|.|
T Consensus       176 ~~v~~~~~l~~l~~~L~~~~~~~~~v~~~a~~~L~~ls~dn~~~~~~i~~~~~~~~~~~ll~~~~~~~~~~~la~giL~N  255 (684)
T 4gmo_A          176 EAVATKQTILRLLFRLISADIAPQDIYEEAISCLTTLSEDNLKVGQAITDDQETHVYDVLLKLATGTDPRAVMACGVLHN  255 (684)
T ss_dssp             HHHHTCHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHTTCHHHHHHHHTCCSSCHHHHHHHHHHSSCTTHHHHHHHHHH
T ss_pred             HHHHhcccHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhccCHHHHHHHHhcchHHHHHHHHHHhcCCcHHHHHHHHHHHh
Confidence            888888999999988853   246899999999999998888887777776654332222  223333456778899988


Q ss_pred             hh
Q 015851          318 FA  319 (399)
Q Consensus       318 l~  319 (399)
                      +.
T Consensus       256 i~  257 (684)
T 4gmo_A          256 VF  257 (684)
T ss_dssp             HH
T ss_pred             Hh
Confidence            74

>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A

Probab=99.18  E-value=3.1e-10  Score=107.84  Aligned_cols=310  Identities=11%  Similarity=0.061  Sum_probs=197.5

Q ss_pred             hhHHHHhhhhhcchhhhHHHHHHHHHHHHHHcCCh--hHHHH----------HHhCCChHHHHhcccCCCCcccccCCCc
Q 015851           60 SAQVNVLNTTFSWLEADRAAAKRATHVLAELAKNE--EVVNW----------IVEGGAVPALVKHLQAPPTSEADRNLKP  127 (399)
Q Consensus        60 ~~~~~~L~~~l~~~~~~~~~~~~a~~~L~~l~~~~--~~~~~----------~~~~g~l~~L~~lL~~~~~~~~~~~~~~  127 (399)
                      +.+...|..++...+.+..+|..|+..|.++....  .....          -....+-..++..|.+++..        
T Consensus        34 ~~~~~~L~~il~~~~~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~~~~~~l~~~~~~~ik~~ll~~l~~~~~~--------  105 (462)
T 1ibr_B           34 PTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQRWLAIDANARREVKNYVLQTLGTETYR--------  105 (462)
T ss_dssp             HHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHTSCHHHHHHHHHHHHHHTTCCCSS--------
T ss_pred             HHHHHHHHHHHHcCCCChHHHHHHHHHHHHhccccchHHHHHHHhhhhcCCHHHHHHHHHHHHHHhCCCCch--------
Confidence            44455555555434456789999999999987531  10000          00112344567777776653        


Q ss_pred             chHHHHHHHHHHHHHhcCC--hhhHHHHHhcCcHHHHHHHHhcc--ccCccccccHHHHHHHHHHHHHHhhcC-chhHHH
Q 015851          128 FEHEVEKGSAFALGLLAVK--PEHQQLIVDNGALSHLVNLLKRH--MDSNCSRAVNSVIRRAADAITNLAHEN-SSIKTR  202 (399)
Q Consensus       128 ~~~~~~~~a~~~L~~l~~~--~~~~~~i~~~~~i~~L~~~L~~~--~~~~~~~~~~~~~~~a~~~L~~l~~~~-~~~~~~  202 (399)
                          + ..++.+++.++..  |..    .-.+.++.|+..+.+.  +.        .++..++.+|..++... +..-..
T Consensus       106 ----v-~~~~~~i~~ia~~~~~~~----~w~~ll~~L~~~l~~~~~~~--------~~r~~al~~l~~l~~~~~~~~~~~  168 (462)
T 1ibr_B          106 ----P-SSASQCVAGIACAEIPVN----QWPELIPQLVANVTNPNSTE--------HMKESTLEAIGYICQDIDPEQLQD  168 (462)
T ss_dssp             ----S-CSHHHHHHHHHHHHGGGT----CCTTHHHHHHHHHHCTTCCH--------HHHHHHHHHHHHHHHHSCGGGTGG
T ss_pred             ----h-hHHHHHHHHHHHHhcccc----ccHHHHHHHHHHhccCCCCH--------HHHHHHHHHHHHHHHhCCchhhHh
Confidence                3 4788899988832  321    1256889999999876  33        78899999999999643 211111


Q ss_pred             HHhcCChHHHHHhhcCC--CHHHHHHHHHHHHHhhcCChhhHH-HHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcC
Q 015851          203 VRMEGGIPPLVELLEFT--DTKVQRAAAGALRTLAFKNDENKN-QIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHS  279 (399)
Q Consensus       203 ~~~~~~i~~L~~ll~~~--~~~v~~~a~~~L~~L~~~~~~~~~-~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~  279 (399)
                      . ...+++.++..+.++  ++.+|..|++++.++.....+... .....-+++.+...+.+++++++..++.+|..++..
T Consensus       169 ~-~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vr~~~~~~l~~l~~~  247 (462)
T 1ibr_B          169 K-SNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSL  247 (462)
T ss_dssp             G-HHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHH
T ss_pred             H-HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHH
Confidence            1 124678888889887  799999999999998753222110 011111466667777888999999999999999864


Q ss_pred             ChhHHHHHHHCCCcHHHHHhhcCCChHHHHHHHHHHHHhhccChhh-----------------HHHHHh---cCCHHHHH
Q 015851          280 SPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDC-----------------KVHIVQ---RGAVRPLI  339 (399)
Q Consensus       280 ~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~-----------------~~~l~~---~g~v~~L~  339 (399)
                      .+......+..++++.++..+.+.++.++..|+..+..++......                 ...+..   ..++|.++
T Consensus       248 ~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~l~  327 (462)
T 1ibr_B          248 YYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILT  327 (462)
T ss_dssp             CGGGCTTTTTTTHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhHHHHHHHhhhccHHHH
Confidence            4332111111156777777788888999999999999887531000                 000111   33567777


Q ss_pred             HhhCC-------CCHHHHHHHHHHHHHhhccCCCCcchhHHHHH--hhccccHHHHHHHHhhhHh
Q 015851          340 EMLQS-------PDVQLREMSAFALGRLAQVITVSVLPAILIFI--IINECQLEVLAFVLSEMVL  395 (399)
Q Consensus       340 ~ll~~-------~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~  395 (399)
                      +.+..       .+..+|..|..+|..++...+..+++.++..+  .+.+...+++..++..+..
T Consensus       328 ~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~r~aal~~l~~  392 (462)
T 1ibr_B          328 QTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGC  392 (462)
T ss_dssp             HHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHH
T ss_pred             HHHHhcccccccccchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHH
Confidence            77743       24578999999999999987766666555444  3455566666666655543

>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1

Probab=99.17  E-value=1.2e-09  Score=107.63  Aligned_cols=270  Identities=18%  Similarity=0.178  Sum_probs=188.7

Q ss_pred             hhhhHHHHHHHHHHHHHHcCChhHHHHHHhCCChHHHHhcccCCCCcccccCCCcchHHHHHHHHHHHHHhc-CChhhHH
Q 015851           73 LEADRAAAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA-VKPEHQQ  151 (399)
Q Consensus        73 ~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~~~~~a~~~L~~l~-~~~~~~~  151 (399)
                      .+.++.+|..|+++|+++.. ++..     ..+++.+..+|.+.++            .+|..|+.++.++. .+|+..+
T Consensus       117 ~~~n~~vr~lAL~~L~~i~~-~~~~-----~~l~~~l~~~L~~~~~------------~VRk~A~~al~~l~~~~p~~v~  178 (618)
T 1w63_A          117 NHSTQFVQGLALCTLGCMGS-SEMC-----RDLAGEVEKLLKTSNS------------YLRKKAALCAVHVIRKVPELME  178 (618)
T ss_dssp             SCSSSHHHHHHHHHHHHHCC-HHHH-----HHHHHHHHHHHHSCCH------------HHHHHHHHHHHHHHHHCGGGGG
T ss_pred             CCCCHhHHHHHHHHHHhcCC-HHHH-----HHHHHHHHHHHcCCCH------------HHHHHHHHHHHHHHHHChHHHH
Confidence            45677788899999999874 3332     2457888889988765            89999999999999 6665432


Q ss_pred             HHHhcCcHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhhcC-------------
Q 015851          152 LIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEF-------------  218 (399)
Q Consensus       152 ~i~~~~~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~-------------  218 (399)
                           ++++.+..++.+.+.        .++..++.+|..++..++.....+  ...+|.++.+|.+             
T Consensus       179 -----~~~~~l~~lL~D~d~--------~V~~~Al~~L~~i~~~~~~~~~~~--~~~v~~l~~~L~~~~~~~~~~~~~~~  243 (618)
T 1w63_A          179 -----MFLPATKNLLNEKNH--------GVLHTSVVLLTEMCERSPDMLAHF--RKLVPQLVRILKNLIMSGYSPEHDVS  243 (618)
T ss_dssp             -----GGGGGTTTSTTCCCH--------HHHHHHHHHHHHHCCSHHHHHHHH--HTTHHHHHHHHHHHHHSCCCTTTCSS
T ss_pred             -----HHHHHHHHHhCCCCH--------hHHHHHHHHHHHHHHhChHHHHHH--HHHHHHHHHHHHHHHcCCCCcccccc
Confidence                 567777777776554        889999999999996554432222  3678888877653             


Q ss_pred             --CCHHHHHHHHHHHHHhhcCChhhHHHHHhcCCHHHHHHhhc------CCCHHHHHHHHHHHHHhhcCChhHHHHHHHC
Q 015851          219 --TDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLR------SEDSAIHYEAVGVIGNLVHSSPNIKKEVLAA  290 (399)
Q Consensus       219 --~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~L~~ll~------~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~  290 (399)
                        .++-.+..++.+|+.++..+++..     ....+.|..++.      +.+..+...|++++..+.. .+....     
T Consensus       244 ~~~~~~~q~~il~~L~~l~~~~~~~~-----~~~~~~L~~l~~~~~~~~~~~~aV~~ea~~~i~~l~~-~~~l~~-----  312 (618)
T 1w63_A          244 GISDPFLQVRILRLLRILGRNDDDSS-----EAMNDILAQVATNTETSKNVGNAILYETVLTIMDIKS-ESGLRV-----  312 (618)
T ss_dssp             SSSCHHHHHHHHHHHHHHTTTCHHHH-----HTTHHHHHHHHHTSCCSSTHHHHHHHHHHHHHHHSCC-CHHHHH-----
T ss_pred             CCCCChHHHHHHHHHHHhCCCCHHHH-----HHHHHHHHHHHhccccccchHHHHHHHHHHHHHhcCC-CHHHHH-----
Confidence              478889999999999997554432     234555555553      2345899999999999853 232211     


Q ss_pred             CCcHHHHHhhcCCChHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhccCCCC-cc
Q 015851          291 GALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQVITVS-VL  369 (399)
Q Consensus       291 ~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~-~~  369 (399)
                      .+++.|..++.++++.++..|+.+|..++...+.   .+.  ...+.++.++.+++..++..|..+|..++....-. ++
T Consensus       313 ~a~~~L~~~L~~~d~~vr~~aL~~L~~i~~~~p~---~~~--~~~~~i~~~l~d~d~~Ir~~alelL~~l~~~~nv~~iv  387 (618)
T 1w63_A          313 LAINILGRFLLNNDKNIRYVALTSLLKTVQTDHN---AVQ--RHRSTIVDCLKDLDVSIKRRAMELSFALVNGNNIRGMM  387 (618)
T ss_dssp             HHHHHHHHHHTCSSTTTHHHHHHHHHHHHHHHHH---HHG--GGHHHHHHGGGSSCHHHHHHHHHHHHHHCCSSSTHHHH
T ss_pred             HHHHHHHHHHhCCCCchHHHHHHHHHHHHhhCHH---HHH--HHHHHHHHHccCCChhHHHHHHHHHHHHcccccHHHHH
Confidence            3567888889988999999999999999854332   222  24678899999999999999999999999865421 23


Q ss_pred             hhHHHHHhhccccHHHHHHHHhhh
Q 015851          370 PAILIFIIINECQLEVLAFVLSEM  393 (399)
Q Consensus       370 ~~~~~~~~~~~~~~~~~~~~l~~~  393 (399)
                      +.+...  +.+...++...+...+
T Consensus       388 ~eL~~~--l~~~d~e~r~~~v~~I  409 (618)
T 1w63_A          388 KELLYF--LDSCEPEFKADCASGI  409 (618)
T ss_dssp             HHHHHH--HHHCCHHHHHHHHHHH
T ss_pred             HHHHHH--HHhCCHHHHHHHHHHH
Confidence            333322  2334445554444443

>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}

Probab=99.08  E-value=5.8e-08  Score=76.61  Aligned_cols=217  Identities=19%  Similarity=0.196  Sum_probs=171.1

Q ss_pred             HhCCChHHHHhcccCCCCcccccCCCcchHHHHHHHHHHHHHhc-CChhhHHHHHhcCcHHHHHHHHhccccCccccccH
Q 015851          101 VEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVN  179 (399)
Q Consensus       101 ~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~~~~~a~~~L~~l~-~~~~~~~~i~~~~~i~~L~~~L~~~~~~~~~~~~~  179 (399)
                      .+..++..++.+|.++-.            .++.+|..++..++ ..|+..+.     .+..|+-+++.+...       
T Consensus        29 ~d~~~l~~lI~~LDDDlw------------tV~kNAl~vi~~i~~~~~el~ep-----l~~kL~vm~~ksEaI-------   84 (253)
T 2db0_A           29 YDESVLKKLIELLDDDLW------------TVVKNAISIIMVIAKTREDLYEP-----MLKKLFSLLKKSEAI-------   84 (253)
T ss_dssp             HCHHHHHHHHHHTTCSCH------------HHHHHHHHHHHHHHTTCGGGHHH-----HHHHHHHHHHHCCSH-------
T ss_pred             hhHHHHHHHHHHhccHHH------------HHHHhHHHHHHHHHHHhHHHHHH-----HHHHHHHHHhhcccC-------
Confidence            345678888999987654            78999999999999 77777664     456777777766553       


Q ss_pred             HHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhhHHHHHhcCCHHHHHHhhc
Q 015851          180 SVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLR  259 (399)
Q Consensus       180 ~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~L~~ll~  259 (399)
                      .+......+++.++...|..-     .+.+|.+..-..-+++.++....++|..+...+|.....+     +.-+..++.
T Consensus        85 pltqeIa~a~G~la~i~Pe~v-----~~vVp~lfanyrigd~kikIn~~yaLeeIaranP~l~~~v-----~rdi~smlt  154 (253)
T 2db0_A           85 PLTQEIAKAFGQMAKEKPELV-----KSMIPVLFANYRIGDEKTKINVSYALEEIAKANPMLMASI-----VRDFMSMLS  154 (253)
T ss_dssp             HHHHHHHHHHHHHHHHCHHHH-----HHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHCHHHHHHH-----HHHHHHHTS
T ss_pred             chHHHHHHHHhHHHHhCHHHH-----HhhHHHHHHHHhcCCccceecHHHHHHHHHHhChHHHHHH-----HHHHHHHhc
Confidence            676778899999998777532     3568888888888999999999999999998888765543     455888999


Q ss_pred             CCCHHHHHHHHHHHHHhhcCChhHHHHHHHCCCcHHHHHhhcCCChHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHH
Q 015851          260 SEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLI  339 (399)
Q Consensus       260 ~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~v~~L~  339 (399)
                      +++..=+..|+..++.+..+...+     -..++|.|+.+|...+.-+|..|..+|.+++..++..++.+.      .-+
T Consensus       155 skd~~Dkl~aLnFi~alGen~~~y-----v~PfLprL~aLL~D~deiVRaSaVEtL~~lA~~npklRkii~------~kl  223 (253)
T 2db0_A          155 SKNREDKLTALNFIEAMGENSFKY-----VNPFLPRIINLLHDGDEIVRASAVEALVHLATLNDKLRKVVI------KRL  223 (253)
T ss_dssp             CSSHHHHHHHHHHHHTCCTTTHHH-----HGGGHHHHHGGGGCSSHHHHHHHHHHHHHHHTSCHHHHHHHH------HHH
T ss_pred             CCChHHHHHHHHHHHHHhccCccc-----cCcchHHHHHHHcCcchhhhHHHHHHHHHHHHcCHHHHHHHH------HHH
Confidence            999888888888888886443332     245799999999999999999999999999988887665433      345


Q ss_pred             HhhCCCCHHHHHHHHHHHHHhhc
Q 015851          340 EMLQSPDVQLREMSAFALGRLAQ  362 (399)
Q Consensus       340 ~ll~~~~~~v~~~a~~~L~~l~~  362 (399)
                      .-+.+.+..+.+....+|..+.-
T Consensus       224 ~e~~D~S~lv~~~V~egL~rl~l  246 (253)
T 2db0_A          224 EELNDTSSLVNKTVKEGISRLLL  246 (253)
T ss_dssp             HHCCCSCHHHHHHHHHHHHHHHH
T ss_pred             HHhcCcHHHHHHHHHHHHHHHHH
Confidence            56678899999999999988763

>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A

Probab=98.91  E-value=1.9e-08  Score=107.32  Aligned_cols=265  Identities=15%  Similarity=0.113  Sum_probs=179.5

Q ss_pred             hhhhHHHHHHHHHHHHHHcCChhH-HHHHHhCCChHHHHhcccCCCCcccccCCCcchHHHHHHHHHHHHHhcC-ChhhH
Q 015851           73 LEADRAAAKRATHVLAELAKNEEV-VNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAV-KPEHQ  150 (399)
Q Consensus        73 ~~~~~~~~~~a~~~L~~l~~~~~~-~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~-~~~~~  150 (399)
                      .+.|..+|..|...|.+....+.. ...-....+++.+++.|.+.+.            .+|..|+.+|+.++. .++  
T Consensus        16 ~s~d~~~R~~A~~~L~~~l~~~~~~~~~~~~~~il~~Ll~~L~d~~~------------~vR~~A~~~L~~l~~~~~~--   81 (1230)
T 1u6g_C           16 TSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNG------------EVQNLAVKCLGPLVSKVKE--   81 (1230)
T ss_dssp             TCSSHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTTCSSH------------HHHHHHHHHHHHHHTTSCH--
T ss_pred             CCCCHhHHHHHHHHHHHHHcccccCCChhHHHHHHHHHHHHhcCCCH------------HHHHHHHHHHHHHHHhCCH--
Confidence            456788899999988887653211 0000111347778888875544            899999999999983 222  


Q ss_pred             HHHHhcCcHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhhcCchhH-----HHHHhcCChHHHHHhhc-CCCHHHH
Q 015851          151 QLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIK-----TRVRMEGGIPPLVELLE-FTDTKVQ  224 (399)
Q Consensus       151 ~~i~~~~~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~-----~~~~~~~~i~~L~~ll~-~~~~~v~  224 (399)
                      ..+  ..+++.++..+.+.+.        .++..++.+|..++.......     ..-.....+|.|...+. ++++.++
T Consensus        82 ~~~--~~i~~~Ll~~l~d~~~--------~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~~~~~~~~  151 (1230)
T 1u6g_C           82 YQV--ETIVDTLCTNMLSDKE--------QLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQ  151 (1230)
T ss_dssp             HHH--HHHHHHHHHHTTCSSS--------HHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHH
T ss_pred             HHH--HHHHHHHHHHhcCCcH--------HHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHcCCCchHHH
Confidence            111  1256677777766554        788889999999886443210     11123467899999998 5789999


Q ss_pred             HHHHHHHHHhhcCChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHHCCCcHHHHHhhcCCC
Q 015851          225 RAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCC  304 (399)
Q Consensus       225 ~~a~~~L~~L~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~  304 (399)
                      ..|+.+|..++...+....... ...++.+...+.++++.+|..|+.+++.++...+..   + -...++.++..|...+
T Consensus       152 ~~al~~l~~~~~~~~~~l~~~~-~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~~~~---~-~~~~l~~l~~~L~~~~  226 (1230)
T 1u6g_C          152 LEALDIMADMLSRQGGLLVNFH-PSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNI---V-FVDLIEHLLSELSKND  226 (1230)
T ss_dssp             HHHHHHHHHHHHHTCSSCTTTH-HHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC--------CTTHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHHhHhHHHHHH-HHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcCHH---H-HHHHHHHHHHHhccCC
Confidence            9999999999853222111111 235677788888889999999999999998653321   1 2345778888776443


Q ss_pred             -hHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhccCCCC
Q 015851          305 -SESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQVITVS  367 (399)
Q Consensus       305 -~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~  367 (399)
                       ..++..++.+++.++...+...... -..+++.++..+.+.++.+|..+..++..++...+..
T Consensus       227 ~~~~r~~a~~~l~~l~~~~~~~~~~~-l~~l~~~ll~~l~d~~~~vR~~a~~~l~~l~~~~~~~  289 (1230)
T 1u6g_C          227 SMSTTRTYIQCIAAISRQAGHRIGEY-LEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPKE  289 (1230)
T ss_dssp             SSCSCTTHHHHHHHHHHHSSGGGTTS-CTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHCTTCC
T ss_pred             chhHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHChHH
Confidence             4567778888888875433321111 1467899999999889999999999999999877765

>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}

Probab=98.87  E-value=2.3e-08  Score=86.44  Aligned_cols=189  Identities=14%  Similarity=0.227  Sum_probs=139.7

Q ss_pred             HHHHHHhccccCccccccHHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhhc-CCCHHHHHHHHHHHHHhhcCCh
Q 015851          161 HLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLE-FTDTKVQRAAAGALRTLAFKND  239 (399)
Q Consensus       161 ~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~-~~~~~v~~~a~~~L~~L~~~~~  239 (399)
                      .+.+.+.+.+.        ..+..++..|..+....+.....- -..+++.|...+. +.+..++..|+.+++.|+..-.
T Consensus        19 ~l~~~l~s~~w--------~~R~~a~~~L~~l~~~~~~~~~~~-~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~   89 (242)
T 2qk2_A           19 DFYDKLEEKKW--------TLRKESLEVLEKLLTDHPKLENGE-YGALVSALKKVITKDSNVVLVAMAGKCLALLAKGLA   89 (242)
T ss_dssp             THHHHHTCSSH--------HHHHHHHHHHHHHHHHCSSBCCCC-CHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHG
T ss_pred             HHHhhhccCCH--------HHHHHHHHHHHHHHccCCCCCCCC-HHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHh
Confidence            35566655444        888999999999986533211000 0234677888884 8899999999999999996432


Q ss_pred             hhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHHCCCcHHHHHhhcCCChHHHHHHHHHHHHhh
Q 015851          240 ENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFA  319 (399)
Q Consensus       240 ~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~  319 (399)
                      ........ .++|.++..+.+.++.+|..|..+|.+++...+ . .     .+++.+...+++.++.++..++..|..+.
T Consensus        90 ~~~~~~~~-~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~-~-~-----~ll~~l~~~l~~~~~~vr~~~l~~l~~~l  161 (242)
T 2qk2_A           90 KRFSNYAS-ACVPSLLEKFKEKKPNVVTALREAIDAIYASTS-L-E-----AQQESIVESLSNKNPSVKSETALFIARAL  161 (242)
T ss_dssp             GGGHHHHH-HHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSC-H-H-----HHHHHHHHHTTCSCHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHH-HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCC-H-H-----HHHHHHHHHHcCCChHHHHHHHHHHHHHH
Confidence            22223333 378999999999999999999999999986432 1 1     25788889999999999999999999965


Q ss_pred             cc-Chhh-HHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhccCCCC
Q 015851          320 AT-DSDC-KVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQVITVS  367 (399)
Q Consensus       320 ~~-~~~~-~~~l~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~  367 (399)
                      .. +++. ...... .++|.|..++.++++++|..|..+++.++..-++.
T Consensus       162 ~~~~~~~~~~~~l~-~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~~vg~~  210 (242)
T 2qk2_A          162 TRTQPTALNKKLLK-LLTTSLVKTLNEPDPTVRDSSAEALGTLIKLMGDK  210 (242)
T ss_dssp             TTCCGGGCCHHHHH-HHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHCHH
T ss_pred             HHcCCCCccHHHHH-HHHHHHHHHhcCCChHHHHHHHHHHHHHHHHcCHH
Confidence            44 2331 122222 57899999999999999999999999999877754

>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}

Probab=98.82  E-value=2.9e-06  Score=67.02  Aligned_cols=225  Identities=15%  Similarity=0.149  Sum_probs=165.6

Q ss_pred             chHHHhHhhhhhhHHHHhhhhhcchhhhHHHHHHHHHHHHHHcCC-hhHHHHHHhCCChHHHHhcccCCCCcccccCCCc
Q 015851           49 SDARQALLSEVSAQVNVLNTTFSWLEADRAAAKRATHVLAELAKN-EEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKP  127 (399)
Q Consensus        49 ~d~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~~a~~~L~~l~~~-~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~  127 (399)
                      .|+......+-.++++.+.+.+  +++-..+|..|+..+..++.. |+....+     +..|+.+++.+..-        
T Consensus        20 ~~eii~~a~~d~~~l~~lI~~L--DDDlwtV~kNAl~vi~~i~~~~~el~epl-----~~kL~vm~~ksEaI--------   84 (253)
T 2db0_A           20 LEKILIMAKYDESVLKKLIELL--DDDLWTVVKNAISIIMVIAKTREDLYEPM-----LKKLFSLLKKSEAI--------   84 (253)
T ss_dssp             HHHHHHHHHHCHHHHHHHHHHT--TCSCHHHHHHHHHHHHHHHTTCGGGHHHH-----HHHHHHHHHHCCSH--------
T ss_pred             HHHHHHHHHhhHHHHHHHHHHh--ccHHHHHHHhHHHHHHHHHHHhHHHHHHH-----HHHHHHHHhhcccC--------
Confidence            3444444556777787777776  444457899999999999996 7776655     56677777765542        


Q ss_pred             chHHHHHHHHHHHHHhc-CChhhHHHHHhcCcHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhhcCchhHHHHHhc
Q 015851          128 FEHEVEKGSAFALGLLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRME  206 (399)
Q Consensus       128 ~~~~~~~~a~~~L~~l~-~~~~~~~~i~~~~~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~  206 (399)
                         .+-+...++++.++ .+|+....     .+|.+..-..-.++        .++....++|..++..+|..-     .
T Consensus        85 ---pltqeIa~a~G~la~i~Pe~v~~-----vVp~lfanyrigd~--------kikIn~~yaLeeIaranP~l~-----~  143 (253)
T 2db0_A           85 ---PLTQEIAKAFGQMAKEKPELVKS-----MIPVLFANYRIGDE--------KTKINVSYALEEIAKANPMLM-----A  143 (253)
T ss_dssp             ---HHHHHHHHHHHHHHHHCHHHHHH-----HHHHHHHHSCCCSH--------HHHHHHHHHHHHHHHHCHHHH-----H
T ss_pred             ---chHHHHHHHHhHHHHhCHHHHHh-----hHHHHHHHHhcCCc--------cceecHHHHHHHHHHhChHHH-----H
Confidence               45457889999999 77766543     35566555555543        889999999999999888643     3


Q ss_pred             CChHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHH
Q 015851          207 GGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKE  286 (399)
Q Consensus       207 ~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~  286 (399)
                      +++.-+..++.++|..=+..|+..+..+......+    +. .++|.|..+|.+.+.-||..|..+|.+++..++..+..
T Consensus       144 ~v~rdi~smltskd~~Dkl~aLnFi~alGen~~~y----v~-PfLprL~aLL~D~deiVRaSaVEtL~~lA~~npklRki  218 (253)
T 2db0_A          144 SIVRDFMSMLSSKNREDKLTALNFIEAMGENSFKY----VN-PFLPRIINLLHDGDEIVRASAVEALVHLATLNDKLRKV  218 (253)
T ss_dssp             HHHHHHHHHTSCSSHHHHHHHHHHHHTCCTTTHHH----HG-GGHHHHHGGGGCSSHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred             HHHHHHHHHhcCCChHHHHHHHHHHHHHhccCccc----cC-cchHHHHHHHcCcchhhhHHHHHHHHHHHHcCHHHHHH
Confidence            45667889999999888888888888777633322    22 37999999999999999999999999999887775543


Q ss_pred             HHHCCCcHHHHHhhcCCChHHHHHHHHHHHHhhc
Q 015851          287 VLAAGALQPVIGLLSSCCSESQREAALLLGQFAA  320 (399)
Q Consensus       287 ~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~  320 (399)
                            +..-+.-++.++..++...-..|+.++.
T Consensus       219 ------i~~kl~e~~D~S~lv~~~V~egL~rl~l  246 (253)
T 2db0_A          219 ------VIKRLEELNDTSSLVNKTVKEGISRLLL  246 (253)
T ss_dssp             ------HHHHHHHCCCSCHHHHHHHHHHHHHHHH
T ss_pred             ------HHHHHHHhcCcHHHHHHHHHHHHHHHHH
Confidence                  3344555777777888777777777764

>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A

Probab=98.80  E-value=1e-06  Score=86.69  Aligned_cols=248  Identities=17%  Similarity=0.178  Sum_probs=163.0

Q ss_pred             hhhhHHHHHHHHHHHHHHcCChhHHHHHHhCCChHHHHhcc--cCCCCcccccCCCcchHHHHHHHHHHHHHhc-CChhh
Q 015851           73 LEADRAAAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHL--QAPPTSEADRNLKPFEHEVEKGSAFALGLLA-VKPEH  149 (399)
Q Consensus        73 ~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~l~~L~~lL--~~~~~~~~~~~~~~~~~~~~~~a~~~L~~l~-~~~~~  149 (399)
                      .+.++.+|--|+.+|+++.. ++...     .+++.+.+++  .+.++            .+|..|+.++.++. .+|+.
T Consensus       121 ~~~n~~ir~lALr~L~~i~~-~e~~~-----~l~~~v~~~l~~~d~~~------------~VRK~A~~al~kl~~~~p~~  182 (621)
T 2vgl_A          121 ASRNPTFMGLALHCIANVGS-REMAE-----AFAGEIPKILVAGDTMD------------SVKQSAALCLLRLYRTSPDL  182 (621)
T ss_dssp             HSCCHHHHHHHHHHHHHHCC-HHHHH-----HHTTHHHHHHHCSSSCH------------HHHHHHHHHHHHHHHHCGGG
T ss_pred             CCCCHHHHHHHHHHhhccCC-HHHHH-----HHHHHHHHHHhCCCCCH------------HHHHHHHHHHHHHHHhChhh
Confidence            45678889999999999954 44433     3478888888  55554            89999999999999 56654


Q ss_pred             HHHHHhcCcHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHH----hhcCC------
Q 015851          150 QQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVE----LLEFT------  219 (399)
Q Consensus       150 ~~~i~~~~~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~----ll~~~------  219 (399)
                      ..   ..++++.+.++|.+.+.        .++..++.++..++..++...     ...+|.++.    ++..+      
T Consensus       183 ~~---~~~~~~~l~~lL~d~d~--------~V~~~a~~~l~~i~~~~~~~~-----~~~~~~~~~~L~~ll~~~~~~~~~  246 (621)
T 2vgl_A          183 VP---MGDWTSRVVHLLNDQHL--------GVVTAATSLITTLAQKNPEEF-----KTSVSLAVSRLSRIVTSASTDLQD  246 (621)
T ss_dssp             CC---CCSCHHHHHHHTTCSCH--------HHHHHHHHHHHHHHHHCHHHH-----TTHHHHHHHHHHHHHHCCSSSCST
T ss_pred             cC---chhHHHHHHHHhCCCCc--------cHHHHHHHHHHHHHHhChHHH-----HHHHHHHHHHHHHHHhCCCCCccc
Confidence            32   24789999999976554        889999999999997665421     123333333    33221      


Q ss_pred             -------CHHHHHHHHHHHHHhhcC-ChhhHHHHHhcCCHHHHHHhhc---------CCCH--HHHHHHHHHHHHhhcCC
Q 015851          220 -------DTKVQRAAAGALRTLAFK-NDENKNQIVECNALPTLILMLR---------SEDS--AIHYEAVGVIGNLVHSS  280 (399)
Q Consensus       220 -------~~~v~~~a~~~L~~L~~~-~~~~~~~~~~~~~~~~L~~ll~---------~~~~--~v~~~a~~~L~~l~~~~  280 (399)
                             ++-.+...+..|..+... +++....+.+  .++.++..+.         +.+.  .+..+++.++..+.. .
T Consensus       247 ~~~~~~~~~w~qi~il~ll~~~~~~~d~~~~~~l~~--~L~~il~~~~~~~ks~~l~~~n~~~aVl~ea~~~i~~l~~-~  323 (621)
T 2vgl_A          247 YTYYFVPAPWLSVKLLRLLQCYPPPEDPAVRGRLTE--CLETILNKAQEPPKSKKVQHSNAKNAVLFEAISLIIHHDS-E  323 (621)
T ss_dssp             TEETTEESHHHHHHHHHHGGGSSSCSSHHHHHHHHH--HHHHHHHHHHSCCSCSSHHHHHHHHHHHHHHHHHHHHHCC-C
T ss_pred             hhhcCCCCchHHHHHHHHHHHhCCCCCHHHHHHHHH--HHHHHHHhhccCcccccccccchHHHHHHHHHHHHHhcCC-c
Confidence                   567888888888887752 2333333333  2333333221         1122  777788888887752 2


Q ss_pred             hhHHHHHHHCCCcHHHHHhhcCCChHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHhhC-CCCHHHHHHHHHHHHH
Q 015851          281 PNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQ-SPDVQLREMSAFALGR  359 (399)
Q Consensus       281 ~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~v~~L~~ll~-~~~~~v~~~a~~~L~~  359 (399)
                      +....     .++..|..+|.++++.++-.|+.+|..++...+. ...+.  ...+.++..+. ++|..++..+...|..
T Consensus       324 ~~~~~-----~~~~~L~~~L~~~~~niry~aL~~l~~l~~~~~~-~~~~~--~~~~~i~~~L~~d~d~~Ir~~aL~lL~~  395 (621)
T 2vgl_A          324 PNLLV-----RACNQLGQFLQHRETNLRYLALESMCTLASSEFS-HEAVK--THIETVINALKTERDVSVRQRAVDLLYA  395 (621)
T ss_dssp             HHHHH-----HHHHHHHHHSSCSCHHHHHHHHHHHHHHTTCTTT-HHHHH--TTHHHHHHHHTTCCCHHHHHHHHHHHHH
T ss_pred             HHHHH-----HHHHHHHHHhcCCCcchHHHHHHHHHHHHhccCc-HHHHH--HHHHHHHHHhccCCCHhHHHHHHHHHHH
Confidence            32222     2456777788778888888888888888765432 12222  24667777777 7888888888888888


Q ss_pred             hhccCC
Q 015851          360 LAQVIT  365 (399)
Q Consensus       360 l~~~~~  365 (399)
                      ++....
T Consensus       396 l~~~~N  401 (621)
T 2vgl_A          396 MCDRSN  401 (621)
T ss_dssp             HCCHHH
T ss_pred             HcChhh
Confidence            885543

>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A

Probab=98.79  E-value=4.3e-07  Score=96.90  Aligned_cols=281  Identities=16%  Similarity=0.095  Sum_probs=176.7

Q ss_pred             hhHHHHhhhhhcchhhhHHHHHHHHHHHHHHcCC--h---------------hHHH--HHHhCCChHHHHhcccCCCCcc
Q 015851           60 SAQVNVLNTTFSWLEADRAAAKRATHVLAELAKN--E---------------EVVN--WIVEGGAVPALVKHLQAPPTSE  120 (399)
Q Consensus        60 ~~~~~~L~~~l~~~~~~~~~~~~a~~~L~~l~~~--~---------------~~~~--~~~~~g~l~~L~~lL~~~~~~~  120 (399)
                      +.+++.+...+  .+.+..+|..++.++..+...  .               ....  .-.-..+++.+.+.+.+++.  
T Consensus       373 ~~l~~~l~~~l--~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~~~l~~~~~--  448 (1230)
T 1u6g_C          373 KTVSPALISRF--KEREENVKADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKALHKQMKEKSV--  448 (1230)
T ss_dssp             TTTHHHHHSTT--SCSSSHHHHHHHHHHHHHHHHHCCC------------CCCHHHHHHHHTTHHHHHHHHHTTCSCH--
T ss_pred             HHHHHHHHHHc--CCCchHHHHHHHHHHHHHHHHhccccccccCccccccccchHHHHHHHhhHHHHHHHHHhccCCH--
Confidence            33445444443  344567888888888776541  0               0011  11122355666666776554  


Q ss_pred             cccCCCcchHHHHHHHHHHHHHhc-CChhh-HHHHHhcCcHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhhcCch
Q 015851          121 ADRNLKPFEHEVEKGSAFALGLLA-VKPEH-QQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSS  198 (399)
Q Consensus       121 ~~~~~~~~~~~~~~~a~~~L~~l~-~~~~~-~~~i~~~~~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~  198 (399)
                                .+|..++.+|+.++ ..+.. ...+  ...++.++..|.+.....      +++..++..+..+......
T Consensus       449 ----------~vr~~~~~~L~~l~~~~~~~l~~~l--~~ll~~l~~~L~d~~~~~------~v~~~a~~~l~~~~~~~~~  510 (1230)
T 1u6g_C          449 ----------KTRQCCFNMLTELVNVLPGALTQHI--PVLVPGIIFSLNDKSSSS------NLKIDALSCLYVILCNHSP  510 (1230)
T ss_dssp             ----------HHHHHHHHHHHHHHHHSTTTTGGGH--HHHHHHHHHHTTCSSSCH------HHHHHHHHHHHHHHHSSCG
T ss_pred             ----------HHHHHHHHHHHHHHHHchhhhHHHH--HHHHHHHHHHHcCCCCcc------hHHHHHHHHHHHHHHhCCH
Confidence                      67888999999887 32221 1111  235677778887654311      7888899999888753222


Q ss_pred             hHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhhcCChh-------hHHHHHhcCCHHHHHHhh--cCCCHHHHHHH
Q 015851          199 IKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDE-------NKNQIVECNALPTLILML--RSEDSAIHYEA  269 (399)
Q Consensus       199 ~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~-------~~~~~~~~~~~~~L~~ll--~~~~~~v~~~a  269 (399)
                      ......-...+|.++..+.+.+..++..+++++..++.....       ....+.+ .+++.++..+  .+.+.++|..|
T Consensus       511 ~~~~~~l~~llp~L~~~l~d~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~-~ll~~ll~~l~~~d~~~~vr~~a  589 (1230)
T 1u6g_C          511 QVFHPHVQALVPPVVACVGDPFYKITSEALLVTQQLVKVIRPLDQPSSFDATPYIK-DLFTCTIKRLKAADIDQEVKERA  589 (1230)
T ss_dssp             GGGHHHHTTTHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCCSSSCCCCCCHHHHH-HHHHHHHHHHSCSSSCHHHHHHH
T ss_pred             HHHHhHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHhcCcccccccchHHHHH-HHHHHHHHHHhccCCCHHHHHHH
Confidence            111123357899999999998899998999999988842111       1112222 3677788888  56788999999


Q ss_pred             HHHHHHhhcCChhHHHHHHHCCCcHHHHHhhcCCChHHHHHHHHHHHHhhccCh-hhHHHHHhcCCHHHHHHhhCCCCHH
Q 015851          270 VGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDS-DCKVHIVQRGAVRPLIEMLQSPDVQ  348 (399)
Q Consensus       270 ~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~-~~~~~l~~~g~v~~L~~ll~~~~~~  348 (399)
                      +.+++.++.......... -..+++.|...+.+.  ..+..++.++..++.... .... -+-..+++.|...+.+.+..
T Consensus       590 ~~~lg~L~~~~g~~~~~~-~~~~l~~L~~~l~~e--~~r~~~~~al~~i~~~~~~~~~~-~~~~~i~~~L~~~l~~~~~~  665 (1230)
T 1u6g_C          590 ISCMGQIICNLGDNLGSD-LPNTLQIFLERLKNE--ITRLTTVKALTLIAGSPLKIDLR-PVLGEGVPILASFLRKNQRA  665 (1230)
T ss_dssp             HHHHHHHHHHTGGGCCTH-HHHHHHHHHHHTTSS--SHHHHHHHHHHHHTTCSSCCCCH-HHHHHHHHHHHHHTTSCCHH
T ss_pred             HHHHHHHHHHhCchhhhh-HHHHHHHHHHHhccc--hhHHHHHHHHHHHHhCccccchH-HHHHHHHHHHHHHHHhCCHH
Confidence            999999985432211100 012344455555433  467788889988874311 1111 22244688899999999999


Q ss_pred             HHHHHHHHHHHhhccCCCC
Q 015851          349 LREMSAFALGRLAQVITVS  367 (399)
Q Consensus       349 v~~~a~~~L~~l~~~~~~~  367 (399)
                      +|.+++.++..++...+..
T Consensus       666 ~r~~a~~al~~l~~~~~~~  684 (1230)
T 1u6g_C          666 LKLGTLSALDILIKNYSDS  684 (1230)
T ss_dssp             HHHHHHHHHHHHHHHCCTT
T ss_pred             HHHHHHHHHHHHHhccccc
Confidence            9999999999999888754

>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}

Probab=98.79  E-value=5.9e-07  Score=74.01  Aligned_cols=198  Identities=17%  Similarity=0.104  Sum_probs=153.7

Q ss_pred             CcHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhhc
Q 015851          157 GALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAF  236 (399)
Q Consensus       157 ~~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~  236 (399)
                      +.+..|..+|...++        .++..++.+|..+...-+..-....-..+++.++.++.+.|..+.-.|+++|..|..
T Consensus        33 ~~l~~L~~LL~dkD~--------~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe  104 (265)
T 3b2a_A           33 RALFLILELAGEDDE--------TTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQENEKVTIKALRALGYLVK  104 (265)
T ss_dssp             HHHHHHHHHTTSSCH--------HHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHT
T ss_pred             hHHHHHHHHHhccch--------HHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHc
Confidence            367888888876665        899999999999997655544445556789999999999999999999999999998


Q ss_pred             CChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHHCCCcHHHHHhhcCCChHHHHHHHHHHH
Q 015851          237 KNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLG  316 (399)
Q Consensus       237 ~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~  316 (399)
                      +.|-....+..  ....|..++.++++-++.+|+..++.+-..+...       +++..+.+++.+.+..++..|..++.
T Consensus       105 ~vpL~~~~y~K--l~~aL~dlik~~~~il~~eaae~Lgklkv~~~~~-------~V~~~l~sLl~Skd~~vK~agl~~L~  175 (265)
T 3b2a_A          105 DVPMGSKTFLK--AAKTLVSLLESPDDMMRIETIDVLSKLQPLEDSK-------LVRTYINELVVSPDLYTKVAGFCLFL  175 (265)
T ss_dssp             TCCBCHHHHHH--HHHHHHHHTTSCCHHHHHHHHHHHHHCCBSCCCH-------HHHHHHHHHHTCSSHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHH--HHHHHHHHhcCCCchHHHHHHHHhCcCCcccchH-------HHHHHHHHHHhCCChhHHHHHHHHHH
Confidence            76655555554  3677889999999999999999999994332221       24677888889999999999999999


Q ss_pred             HhhccCh--hhHHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhccCC-CCcchhHHHHH
Q 015851          317 QFAATDS--DCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQVIT-VSVLPAILIFI  376 (399)
Q Consensus       317 ~l~~~~~--~~~~~l~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~-~~~~~~~~~~~  376 (399)
                      +++....  +..     .+++.-+-.++++.|+.+++.|..++-.+....- ..+++.+...+
T Consensus       176 eia~~S~D~~i~-----~~I~~eI~elL~~eD~~l~e~aLd~Le~ils~pi~~~~~~~~~~~~  233 (265)
T 3b2a_A          176 NMLNSSADSGHL-----TLILDEIPSLLQNDNEFIVELALDVLEKALSFPLLENVKIELLKIS  233 (265)
T ss_dssp             HHGGGCSSCCCG-----GGTTTTHHHHHTCSCHHHHHHHHHHHHHHTTSCCCSCCHHHHHHHH
T ss_pred             HhhcccCCHHHH-----HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCcccHhHHHHHHHHH
Confidence            9997542  222     2345567788999999999999999998886543 33455444433

>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A

Probab=98.77  E-value=5.5e-07  Score=88.55  Aligned_cols=278  Identities=16%  Similarity=0.156  Sum_probs=182.0

Q ss_pred             hHHHHhhhhhcchhhhHHHHHHHHHHHHHHcC-ChhHHHHHHhCCChHHHHhcccCCCCcccccCCCcchHHHHHHHHHH
Q 015851           61 AQVNVLNTTFSWLEADRAAAKRATHVLAELAK-NEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFA  139 (399)
Q Consensus        61 ~~~~~L~~~l~~~~~~~~~~~~a~~~L~~l~~-~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~~~~~a~~~  139 (399)
                      .+++.+.+.+...+.++.+|..|+.++.++.. +|+...   ..+.++.+.++|.+.++            .++..|+.+
T Consensus       146 ~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p~~~~---~~~~~~~l~~lL~d~d~------------~V~~~a~~~  210 (621)
T 2vgl_A          146 AFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTSPDLVP---MGDWTSRVVHLLNDQHL------------GVVTAATSL  210 (621)
T ss_dssp             HHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHCGGGCC---CCSCHHHHHHHTTCSCH------------HHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhChhhcC---chhHHHHHHHHhCCCCc------------cHHHHHHHH
Confidence            34444444442246788999999999999988 465432   24889999999987665            788999999


Q ss_pred             HHHhc-CChhhHHHHHhcCcHHHHHHHHh----ccccC-cc----ccccHHHHHHHHHHHHHHhhc-CchhHHHHHhcCC
Q 015851          140 LGLLA-VKPEHQQLIVDNGALSHLVNLLK----RHMDS-NC----SRAVNSVIRRAADAITNLAHE-NSSIKTRVRMEGG  208 (399)
Q Consensus       140 L~~l~-~~~~~~~~i~~~~~i~~L~~~L~----~~~~~-~~----~~~~~~~~~~a~~~L~~l~~~-~~~~~~~~~~~~~  208 (399)
                      |..++ .++..-     ...++.+++.|.    ....+ ..    .-+..-.+...+..|..++.. ++.....+.+  .
T Consensus       211 l~~i~~~~~~~~-----~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~~~~~~d~~~~~~l~~--~  283 (621)
T 2vgl_A          211 ITTLAQKNPEEF-----KTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYPPPEDPAVRGRLTE--C  283 (621)
T ss_dssp             HHHHHHHCHHHH-----TTHHHHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHGGGSSSCSSHHHHHHHHH--H
T ss_pred             HHHHHHhChHHH-----HHHHHHHHHHHHHHHhCCCCCccchhhcCCCCchHHHHHHHHHHHhCCCCCHHHHHHHHH--H
Confidence            99998 555421     124455554443    21110 00    000014666777777777753 3333332322  2


Q ss_pred             hHHHHHhh---------cCCCH--HHHHHHHHHHHHhhcCChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhh
Q 015851          209 IPPLVELL---------EFTDT--KVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLV  277 (399)
Q Consensus       209 i~~L~~ll---------~~~~~--~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~  277 (399)
                      +..++..+         .+.+.  .+...+..++..+.. .++...     .++..|..++.+++++++..++.+|..++
T Consensus       284 L~~il~~~~~~~ks~~l~~~n~~~aVl~ea~~~i~~l~~-~~~~~~-----~~~~~L~~~L~~~~~niry~aL~~l~~l~  357 (621)
T 2vgl_A          284 LETILNKAQEPPKSKKVQHSNAKNAVLFEAISLIIHHDS-EPNLLV-----RACNQLGQFLQHRETNLRYLALESMCTLA  357 (621)
T ss_dssp             HHHHHHHHHSCCSCSSHHHHHHHHHHHHHHHHHHHHHCC-CHHHHH-----HHHHHHHHHSSCSCHHHHHHHHHHHHHHT
T ss_pred             HHHHHHhhccCcccccccccchHHHHHHHHHHHHHhcCC-cHHHHH-----HHHHHHHHHhcCCCcchHHHHHHHHHHHH
Confidence            33344322         22233  788888999988864 333222     24667888888899999999999999998


Q ss_pred             cCChhHHHHHHHCCCcHHHHHhhc-CCChHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHhhCCCCHHHHHHHHHH
Q 015851          278 HSSPNIKKEVLAAGALQPVIGLLS-SCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFA  356 (399)
Q Consensus       278 ~~~~~~~~~~~~~~~l~~L~~lL~-~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~v~~L~~ll~~~~~~v~~~a~~~  356 (399)
                      ...+.. . ++ ......++..|. +++..++..++..|..++  ++.+...+     +..|...+.+.+.+.+..++.+
T Consensus       358 ~~~~~~-~-~~-~~~~~~i~~~L~~d~d~~Ir~~aL~lL~~l~--~~~Nv~~I-----v~eL~~yl~~~d~~~~~~~v~~  427 (621)
T 2vgl_A          358 SSEFSH-E-AV-KTHIETVINALKTERDVSVRQRAVDLLYAMC--DRSNAQQI-----VAEMLSYLETADYSIREEIVLK  427 (621)
T ss_dssp             TCTTTH-H-HH-HTTHHHHHHHHTTCCCHHHHHHHHHHHHHHC--CHHHHHHH-----HHHHHHHHHHCCHHHHHHHHHH
T ss_pred             hccCcH-H-HH-HHHHHHHHHHhccCCCHhHHHHHHHHHHHHc--ChhhHHHH-----HHHHHHHHHhcCHHHHHHHHHH
Confidence            654321 1 22 345778888888 889999999999999997  35554444     4457777777899999999999


Q ss_pred             HHHhhccCCCC---cchhHHHHH
Q 015851          357 LGRLAQVITVS---VLPAILIFI  376 (399)
Q Consensus       357 L~~l~~~~~~~---~~~~~~~~~  376 (399)
                      ++.++...+..   ++..++..+
T Consensus       428 I~~la~k~~~~~~~~v~~Ll~ll  450 (621)
T 2vgl_A          428 VAILAEKYAVDYTWYVDTILNLI  450 (621)
T ss_dssp             HHHHHHHHCSSTHHHHHHHHHHH
T ss_pred             HHHHHHhcCCcHHHHHHHHHHHH
Confidence            99999765443   344444444

>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16

Probab=98.72  E-value=8.8e-10  Score=85.62  Aligned_cols=122  Identities=22%  Similarity=0.218  Sum_probs=93.3

Q ss_pred             hcCChHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHH
Q 015851          205 MEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIK  284 (399)
Q Consensus       205 ~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~  284 (399)
                      ....++.+..+|+++++.+|..|+++|+.+..            ..++.|+.+|.++++.+|..|+++|+++.  ++.  
T Consensus        10 ~~~~~~~l~~~L~~~~~~vR~~A~~~L~~~~~------------~~~~~L~~~L~d~~~~vR~~A~~aL~~~~--~~~--   73 (131)
T 1te4_A           10 HSSGLVPRGSHMADENKWVRRDVSTALSRMGD------------EAFEPLLESLSNEDWRIRGAAAWIIGNFQ--DER--   73 (131)
T ss_dssp             -----------CCSSCCCSSSSCCSSTTSCSS------------TTHHHHHHGGGCSCHHHHHHHHHHHGGGC--SHH--
T ss_pred             ccccHHHHHHHhcCCCHHHHHHHHHHHHHhCc------------hHHHHHHHHHcCCCHHHHHHHHHHHHhcC--CHH--
Confidence            34678889999999999999999998886643            13688999999999999999999999985  222  


Q ss_pred             HHHHHCCCcHHHHHhhcCCChHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHh
Q 015851          285 KEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRL  360 (399)
Q Consensus       285 ~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l  360 (399)
                             .++.|+..+.++++.++..|+++|+++.  ++         ..++.|..+++++++.|+..|..+|..|
T Consensus        74 -------a~~~L~~~L~d~~~~VR~~A~~aL~~~~--~~---------~a~~~L~~~l~d~~~~vr~~A~~aL~~i  131 (131)
T 1te4_A           74 -------AVEPLIKLLEDDSGFVRSGAARSLEQIG--GE---------RVRAAMEKLAETGTGFARKVAVNYLETH  131 (131)
T ss_dssp             -------HHHHHHHHHHHCCTHHHHHHHHHHHHHC--SH---------HHHHHHHHHTTSCCTHHHHHHHHHGGGC
T ss_pred             -------HHHHHHHHHcCCCHHHHHHHHHHHHHhC--cH---------HHHHHHHHHHhCCCHHHHHHHHHHHHhC
Confidence                   3788899999999999999999999984  22         2478899999999999999999998653

>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}

Probab=98.72  E-value=1.4e-07  Score=81.53  Aligned_cols=189  Identities=8%  Similarity=0.085  Sum_probs=134.8

Q ss_pred             HHHHHHHHHHHH-HhhcCchhHHHHHh-cCChHHHHHhh-cCCCHHHHHHHHHHHHHhhcCCh-hhHH-HHHhcCCHHHH
Q 015851          180 SVIRRAADAITN-LAHENSSIKTRVRM-EGGIPPLVELL-EFTDTKVQRAAAGALRTLAFKND-ENKN-QIVECNALPTL  254 (399)
Q Consensus       180 ~~~~~a~~~L~~-l~~~~~~~~~~~~~-~~~i~~L~~ll-~~~~~~v~~~a~~~L~~L~~~~~-~~~~-~~~~~~~~~~L  254 (399)
                      .-+..++..|.. ++...+........ ...+..|...+ .+.+..++..|+.+|+.|+.+-. .... .... .++|.+
T Consensus        31 ~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~~y~~-~llp~l  109 (249)
T 2qk1_A           31 KDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSKDYVS-LVFTPL  109 (249)
T ss_dssp             HHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCHHHHH-HHHHHH
T ss_pred             HHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccHHHHH-HHHHHH
Confidence            777888888888 87543332100000 13466777788 68899999999999999996432 2222 2222 268899


Q ss_pred             HHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHHCCCcHHHHHhhcCCChHHHHHHHHHHHHhhccChh---hHHHHHh
Q 015851          255 ILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSD---CKVHIVQ  331 (399)
Q Consensus       255 ~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~---~~~~l~~  331 (399)
                      +..+.+..+.|+..+..++..++...+.......-..+++.|+..|++.++.++..++.+|..++...+.   .....+.
T Consensus       110 l~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~~~~~~~~l~~~l~  189 (249)
T 2qk1_A          110 LDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKEEKDGYSTLQRYLK  189 (249)
T ss_dssp             HHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCCSCSHHHHHHHT
T ss_pred             HHHHcCCCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCcchhHHHHHH
Confidence            9999999999999999999988854311000000012577888889999999999999999999865432   2223333


Q ss_pred             cCCHHHHHHhhCCCCHHHHHHHHHHHHHhhccCCCCcc
Q 015851          332 RGAVRPLIEMLQSPDVQLREMSAFALGRLAQVITVSVL  369 (399)
Q Consensus       332 ~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~  369 (399)
                      ..++|.|.+++.++++.||..|..++..++..-+++.+
T Consensus       190 ~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~~vG~~~~  227 (249)
T 2qk1_A          190 DEVVPIVIQIVNDTQPAIRTIGFESFAILIKIFGMNTF  227 (249)
T ss_dssp             TTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCSGGG
T ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCHHHH
Confidence            57899999999999999999999999999988887633

>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N

Probab=98.65  E-value=2.2e-05  Score=78.90  Aligned_cols=243  Identities=14%  Similarity=0.118  Sum_probs=165.1

Q ss_pred             HHHHhhhhhcchh------hhHHHHHHHHHHHHHHcCChhHHHHHHhCCChHHHHhcccCCCCcccccCCCcchHHHHHH
Q 015851           62 QVNVLNTTFSWLE------ADRAAAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKG  135 (399)
Q Consensus        62 ~~~~L~~~l~~~~------~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~~~~~  135 (399)
                      .+..|...+...+      ....+|..|+..|+-+..+....      .+++.|...+.+++.            .++..
T Consensus       430 ~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~GS~~e------ev~e~L~~~L~dd~~------------~~~~~  491 (963)
T 4ady_A          430 TTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAMGSANI------EVYEALKEVLYNDSA------------TSGEA  491 (963)
T ss_dssp             HHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTTCCCH------HHHHHHHHHHHTCCH------------HHHHH
T ss_pred             HHHHHHHHHcCccccccccccHHHHHHHHHHHHHHhcCCCCH------HHHHHHHHHHhcCCH------------HHHHH
Confidence            5666666663221      13568888888988875432111      125567777776554            45668


Q ss_pred             HHHHHHHhcCChhhHHHHHhcCcHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHh
Q 015851          136 SAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVEL  215 (399)
Q Consensus       136 a~~~L~~l~~~~~~~~~i~~~~~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~l  215 (399)
                      |+.+|+.+.....+.+      ++..|++.+.+...+       .+++.++..|+.+....+.         .++.+++.
T Consensus       492 AalALGli~vGTgn~~------ai~~LL~~~~e~~~e-------~vrR~aalgLGll~~g~~e---------~~~~li~~  549 (963)
T 4ady_A          492 AALGMGLCMLGTGKPE------AIHDMFTYSQETQHG-------NITRGLAVGLALINYGRQE---------LADDLITK  549 (963)
T ss_dssp             HHHHHHHHHTTCCCHH------HHHHHHHHHHHCSCH-------HHHHHHHHHHHHHTTTCGG---------GGHHHHHH
T ss_pred             HHHHHhhhhcccCCHH------HHHHHHHHHhccCcH-------HHHHHHHHHHHhhhCCChH---------HHHHHHHH
Confidence            8899998753222222      456666666544332       8889899999988755543         35566666


Q ss_pred             hc-CCCHHHHHHHHHHHHHhhcCChhhHHHHHhcCCHHHHHHhh-cCCCHHHHHHHHHHHHHhhcCChhHHHHHHHCCCc
Q 015851          216 LE-FTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILML-RSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGAL  293 (399)
Q Consensus       216 l~-~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~L~~ll-~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l  293 (399)
                      |. +.++-+|..++.+++--..+....       ..++.|+..+ .+.+..+|..|+.+|+.+..+.+         ..+
T Consensus       550 L~~~~dp~vRygaa~alglAyaGTGn~-------~aIq~LL~~~~~d~~d~VRraAViaLGlI~~g~~---------e~v  613 (963)
T 4ady_A          550 MLASDESLLRYGGAFTIALAYAGTGNN-------SAVKRLLHVAVSDSNDDVRRAAVIALGFVLLRDY---------TTV  613 (963)
T ss_dssp             HHHCSCHHHHHHHHHHHHHHTTTSCCH-------HHHHHHHHHHHHCSCHHHHHHHHHHHHHHTSSSC---------SSH
T ss_pred             HHhCCCHHHHHHHHHHHHHHhcCCCCH-------HHHHHHHHHhccCCcHHHHHHHHHHHHhhccCCH---------HHH
Confidence            65 467888888887776444321111       1355455444 45678999999999999886654         246


Q ss_pred             HHHHHhh-cCCChHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhccCCCC
Q 015851          294 QPVIGLL-SSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQVITVS  367 (399)
Q Consensus       294 ~~L~~lL-~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~  367 (399)
                      +.++.+| ++.++.+|..|+++|+.++.+++..       .+++.|..++++.+..||+.|+.+|+.+.....+.
T Consensus       614 ~rlv~~L~~~~d~~VR~gAalALGli~aGn~~~-------~aid~L~~L~~D~d~~Vrq~Ai~ALG~Ig~gtnna  681 (963)
T 4ady_A          614 PRIVQLLSKSHNAHVRCGTAFALGIACAGKGLQ-------SAIDVLDPLTKDPVDFVRQAAMIALSMILIQQTEK  681 (963)
T ss_dssp             HHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCCH-------HHHHHHHHHHTCSSHHHHHHHHHHHHHHSTTCCTT
T ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHhccCCCcH-------HHHHHHHHHccCCCHHHHHHHHHHHHHHhcCCccc
Confidence            6666654 5788999999999999998765432       13667888899999999999999999999887776

>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9

Probab=98.63  E-value=5.8e-06  Score=76.29  Aligned_cols=232  Identities=17%  Similarity=0.107  Sum_probs=155.0

Q ss_pred             HHHHHHHHHHHHhcCChhhHHHHHhcC--cHHHHHHHHhccccCc---------cccccHHHHHHHHHHHHHHhhcCchh
Q 015851          131 EVEKGSAFALGLLAVKPEHQQLIVDNG--ALSHLVNLLKRHMDSN---------CSRAVNSVIRRAADAITNLAHENSSI  199 (399)
Q Consensus       131 ~~~~~a~~~L~~l~~~~~~~~~i~~~~--~i~~L~~~L~~~~~~~---------~~~~~~~~~~~a~~~L~~l~~~~~~~  199 (399)
                      +.+.-++.+|..|...+++|..+.+.+  .++.++.++...-+..         .......++..++.++|-|+. ++..
T Consensus       183 ~~~~i~v~~L~~Ll~~~~~R~~f~~~~~~~~~~l~~il~~~~~~~~~~~~~~~~~~~~~~Ql~Y~~ll~iWlLSF-~~~~  261 (480)
T 1ho8_A          183 DTCYVCIRLLQELAVIPEYRDVIWLHEKKFMPTLFKILQRATDSQLATRIVATNSNHLGIQLQYHSLLLIWLLTF-NPVF  261 (480)
T ss_dssp             HHHHHHHHHHHHHHTSHHHHHHHHTTHHHHHHHHHHHHHHHHC-------------CCHHHHHHHHHHHHHHHTT-SHHH
T ss_pred             chHHHHHHHHHHHhcchhHHHHHHHcccchhHHHHHHHHHhhccccccccccccCCCccHHHHHHHHHHHHHHHc-CHHH
Confidence            345578999999999999999998654  4677776655431100         111134789999999999995 4445


Q ss_pred             HHHHHhcCCh--HHHHHhhcCC-CHHHHHHHHHHHHHhhcCChh----hHH-HHHhcCCHHHHHHhhcC---CCHHHHHH
Q 015851          200 KTRVRMEGGI--PPLVELLEFT-DTKVQRAAAGALRTLAFKNDE----NKN-QIVECNALPTLILMLRS---EDSAIHYE  268 (399)
Q Consensus       200 ~~~~~~~~~i--~~L~~ll~~~-~~~v~~~a~~~L~~L~~~~~~----~~~-~~~~~~~~~~L~~ll~~---~~~~v~~~  268 (399)
                      ...+...+..  +.|+..++.. .+++.+.++.+|.|+....++    ... .++..++++ ++..|..   .|+++...
T Consensus       262 ~~~l~~~~i~~~~~L~~i~k~s~KEKvvRv~la~l~Nll~~~~~~~~~~~~~~~~~~~~l~-~l~~L~~rk~~Dedl~ed  340 (480)
T 1ho8_A          262 ANELVQKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRVKQHKKVIKQLLLLGNALP-TVQSLSERKYSDEELRQD  340 (480)
T ss_dssp             HHHHHTTSHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSSSTTHHHHHHHHHHHHCHHH-HHHHHHSSCCSSHHHHHH
T ss_pred             HHHHHhcchHHHHHHHHHHHhhccchhHHHHHHHHHHHhcccchhhhhHHHHHHHHccchH-HHHHHhhCCCCcHHHHHH
Confidence            5555544433  5666667654 489999999999999985421    122 233344444 5555543   46655543


Q ss_pred             HHHHHHHhhc------CChhHHHH----------------HHH----------CCCcHHHHHhhcC----------CChH
Q 015851          269 AVGVIGNLVH------SSPNIKKE----------------VLA----------AGALQPVIGLLSS----------CCSE  306 (399)
Q Consensus       269 a~~~L~~l~~------~~~~~~~~----------------~~~----------~~~l~~L~~lL~~----------~~~~  306 (399)
                      .-.....|-.      +.+++..+                +..          ..++..|+++|.+          .++.
T Consensus       341 l~~L~e~L~~~~~~ltsfDeY~~El~sG~L~WSP~H~se~FW~ENa~kf~e~~~~llk~L~~iL~~~~~~~~~~~s~d~~  420 (480)
T 1ho8_A          341 ISNLKEILENEYQELTSFDEYVAELDSKLLCWSPPHVDNGFWSDNIDEFKKDNYKIFRQLIELLQAKVRNGDVNAKQEKI  420 (480)
T ss_dssp             HHHHHHHHHHHHHTCCHHHHHHHHHHHTCCCCCGGGGCHHHHHHHSGGGSSGGGHHHHHHHHHHHHHHHTTCCCSHHHHH
T ss_pred             HHHHHHHHHHHHHhcccHHHHHHHHhcCCcccCCCccchhHHHHHHHHHHhcchHHHHHHHHHHhhhccccccccCCCcc
Confidence            3322221110      01122222                221          1257888999973          3567


Q ss_pred             HHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhccC
Q 015851          307 SQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQVI  364 (399)
Q Consensus       307 v~~~a~~~L~~l~~~~~~~~~~l~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~  364 (399)
                      +..-||.=|+.++...|.++..+-+.|+-..+.+++.++|++|+..|..|+..+..+.
T Consensus       421 ~laVAc~Digefvr~~P~gr~i~~~lg~K~~VM~Lm~h~d~~Vr~~AL~avQklm~~~  478 (480)
T 1ho8_A          421 IIQVALNDITHVVELLPESIDVLDKTGGKADIMELLNHSDSRVKYEALKATQAIIGYT  478 (480)
T ss_dssp             HHHHHHHHHHHHHHHCTTHHHHHHHHSHHHHHHHHTSCSSHHHHHHHHHHHHHHHHHS
T ss_pred             eEEeecccHHHHHHHCcchhHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHHhc
Confidence            7888999999999999999999999999999999999999999999999999876543

>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9

Probab=98.58  E-value=2e-06  Score=79.34  Aligned_cols=233  Identities=19%  Similarity=0.178  Sum_probs=157.6

Q ss_pred             HHHHHHHHHHHcCChhHHHHHHhCC--ChHHHHhcccCC----CCc-ccccCCCcchHHHHHHHHHHHHHhcCChhhHHH
Q 015851           80 AKRATHVLAELAKNEEVVNWIVEGG--AVPALVKHLQAP----PTS-EADRNLKPFEHEVEKGSAFALGLLAVKPEHQQL  152 (399)
Q Consensus        80 ~~~a~~~L~~l~~~~~~~~~~~~~g--~l~~L~~lL~~~----~~~-~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~  152 (399)
                      +.-++.+|..+...+++|..+.+.+  .++.++.++...    ... .....+......++.+++.+++-|+.+++..+.
T Consensus       185 ~~i~v~~L~~Ll~~~~~R~~f~~~~~~~~~~l~~il~~~~~~~~~~~~~~~~~~~~~~Ql~Y~~ll~iWlLSF~~~~~~~  264 (480)
T 1ho8_A          185 CYVCIRLLQELAVIPEYRDVIWLHEKKFMPTLFKILQRATDSQLATRIVATNSNHLGIQLQYHSLLLIWLLTFNPVFANE  264 (480)
T ss_dssp             HHHHHHHHHHHHTSHHHHHHHHTTHHHHHHHHHHHHHHHHC-------------CCHHHHHHHHHHHHHHHTTSHHHHHH
T ss_pred             HHHHHHHHHHHhcchhHHHHHHHcccchhHHHHHHHHHhhccccccccccccCCCccHHHHHHHHHHHHHHHcCHHHHHH
Confidence            5578999999999999999998764  366676544421    100 000001122457899999999999999888888


Q ss_pred             HHhcCcH--HHHHHHHhccccCccccccHHHHHHHHHHHHHHhhcCch-----hHHHHHhcCChHHHHHhhcC---CCHH
Q 015851          153 IVDNGAL--SHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSS-----IKTRVRMEGGIPPLVELLEF---TDTK  222 (399)
Q Consensus       153 i~~~~~i--~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~-----~~~~~~~~~~i~~L~~ll~~---~~~~  222 (399)
                      +...+..  +.|+..++....+       .+.+.++.+|.|+....+.     ..+.+...++ +.++..|..   .|++
T Consensus       265 l~~~~i~~~~~L~~i~k~s~KE-------KvvRv~la~l~Nll~~~~~~~~~~~~~~~~~~~~-l~~l~~L~~rk~~Ded  336 (480)
T 1ho8_A          265 LVQKYLSDFLDLLKLVKITIKE-------KVSRLCISIILQCCSTRVKQHKKVIKQLLLLGNA-LPTVQSLSERKYSDEE  336 (480)
T ss_dssp             HHTTSHHHHHHHHHHHHHCCSH-------HHHHHHHHHHHHTTSSSSTTHHHHHHHHHHHHCH-HHHHHHHHSSCCSSHH
T ss_pred             HHhcchHHHHHHHHHHHhhccc-------hhHHHHHHHHHHHhcccchhhhhHHHHHHHHccc-hHHHHHHhhCCCCcHH
Confidence            8877643  5677777776655       8999999999999965521     2223333344 445555543   4555


Q ss_pred             HHHHHHHH-------HHHhhc--------------CChhhHH-H--------HHh--cCCHHHHHHhhcC----------
Q 015851          223 VQRAAAGA-------LRTLAF--------------KNDENKN-Q--------IVE--CNALPTLILMLRS----------  260 (399)
Q Consensus       223 v~~~a~~~-------L~~L~~--------------~~~~~~~-~--------~~~--~~~~~~L~~ll~~----------  260 (399)
                      +....-..       +..+++              ..|..+. .        +-+  ...+..|+++|.+          
T Consensus       337 l~edl~~L~e~L~~~~~~ltsfDeY~~El~sG~L~WSP~H~se~FW~ENa~kf~e~~~~llk~L~~iL~~~~~~~~~~~s  416 (480)
T 1ho8_A          337 LRQDISNLKEILENEYQELTSFDEYVAELDSKLLCWSPPHVDNGFWSDNIDEFKKDNYKIFRQLIELLQAKVRNGDVNAK  416 (480)
T ss_dssp             HHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHTCCCCCGGGGCHHHHHHHSGGGSSGGGHHHHHHHHHHHHHHHTTCCCSH
T ss_pred             HHHHHHHHHHHHHHHHHhcccHHHHHHHHhcCCcccCCCccchhHHHHHHHHHHhcchHHHHHHHHHHhhhccccccccC
Confidence            54433222       222221              1121111 1        211  1246778888873          


Q ss_pred             CCHHHHHHHHHHHHHhhcCChhHHHHHHHCCCcHHHHHhhcCCChHHHHHHHHHHHHhhc
Q 015851          261 EDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAA  320 (399)
Q Consensus       261 ~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~  320 (399)
                      .++.+..-||.=++.++...|..+..+-+-|+=..+++++.+++++++.+|+.++..+..
T Consensus       417 ~d~~~laVAc~Digefvr~~P~gr~i~~~lg~K~~VM~Lm~h~d~~Vr~~AL~avQklm~  476 (480)
T 1ho8_A          417 QEKIIIQVALNDITHVVELLPESIDVLDKTGGKADIMELLNHSDSRVKYEALKATQAIIG  476 (480)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCTTHHHHHHHHSHHHHHHHHTSCSSHHHHHHHHHHHHHHHH
T ss_pred             CCcceEEeecccHHHHHHHCcchhHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence            367899999999999999889998888888999999999999999999999999988764

>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}

Probab=98.55  E-value=5.6e-06  Score=68.29  Aligned_cols=151  Identities=20%  Similarity=0.190  Sum_probs=119.8

Q ss_pred             CChHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHH
Q 015851          207 GGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKE  286 (399)
Q Consensus       207 ~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~  286 (399)
                      +.+..+..+|.+.|+.++..++.+|..+....++......-..+++.++.++.++++.+.-.|+.+|..+..+.+-....
T Consensus        33 ~~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL~~~~  112 (265)
T 3b2a_A           33 RALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQENEKVTIKALRALGYLVKDVPMGSKT  112 (265)
T ss_dssp             HHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCBCHHH
T ss_pred             hHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCCCCHHH
Confidence            45778999999999999999999999999854444444433458999999999999999999999999998664432222


Q ss_pred             HHHCCCcHHHHHhhcCCChHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhccCCC
Q 015851          287 VLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQVITV  366 (399)
Q Consensus       287 ~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~  366 (399)
                      +.  .+...+..++.++++-.+.+|+..++.+--.+ ..      .+++..+.+++.|.+.+++.++..++.+++..+.+
T Consensus       113 y~--Kl~~aL~dlik~~~~il~~eaae~Lgklkv~~-~~------~~V~~~l~sLl~Skd~~vK~agl~~L~eia~~S~D  183 (265)
T 3b2a_A          113 FL--KAAKTLVSLLESPDDMMRIETIDVLSKLQPLE-DS------KLVRTYINELVVSPDLYTKVAGFCLFLNMLNSSAD  183 (265)
T ss_dssp             HH--HHHHHHHHHTTSCCHHHHHHHHHHHHHCCBSC-CC------HHHHHHHHHHHTCSSHHHHHHHHHHHHHHGGGCSS
T ss_pred             HH--HHHHHHHHHhcCCCchHHHHHHHHhCcCCccc-ch------HHHHHHHHHHHhCCChhHHHHHHHHHHHhhcccCC
Confidence            21  24778888899999999999999999983211 11      22466788899999999999999999999997764

>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}

Probab=98.50  E-value=2.9e-07  Score=79.41  Aligned_cols=172  Identities=15%  Similarity=0.134  Sum_probs=123.6

Q ss_pred             HHHHHHHHHHHHhc-CChhhHHHHHhcCcHHHHHHHHh-ccccCccccccHHHHHHHHHHHHHHhhcCchhHHHHHhcCC
Q 015851          131 EVEKGSAFALGLLA-VKPEHQQLIVDNGALSHLVNLLK-RHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGG  208 (399)
Q Consensus       131 ~~~~~a~~~L~~l~-~~~~~~~~i~~~~~i~~L~~~L~-~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~  208 (399)
                      ..|..|+..|..+. ..+...... -...++.|...+. +.+.        .++..++.++..|+..-...- .-....+
T Consensus        30 ~~R~~a~~~L~~l~~~~~~~~~~~-~~~i~~~L~~~l~kd~~~--------~V~~~a~~~l~~la~~l~~~~-~~~~~~i   99 (242)
T 2qk2_A           30 TLRKESLEVLEKLLTDHPKLENGE-YGALVSALKKVITKDSNV--------VLVAMAGKCLALLAKGLAKRF-SNYASAC   99 (242)
T ss_dssp             HHHHHHHHHHHHHHHHCSSBCCCC-CHHHHHHHHHHHHHCSCH--------HHHHHHHHHHHHHHHHHGGGG-HHHHHHH
T ss_pred             HHHHHHHHHHHHHHccCCCCCCCC-HHHHHHHHHHHhccCCCH--------HHHHHHHHHHHHHHHHHhhhH-HHHHHHH
Confidence            78889999999887 323211000 0124666777774 5443        889999999999995322111 1122457


Q ss_pred             hHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCC-hhH-HHH
Q 015851          209 IPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSS-PNI-KKE  286 (399)
Q Consensus       209 i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~-~~~-~~~  286 (399)
                      +|.++..+.+.++.+|..+..+|.++.... ..      ..+++.+...+++.++.++..++..|+.+.... +.. ...
T Consensus       100 lp~ll~~l~d~~~~vr~~a~~aL~~~~~~~-~~------~~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~~~~~~~  172 (242)
T 2qk2_A          100 VPSLLEKFKEKKPNVVTALREAIDAIYAST-SL------EAQQESIVESLSNKNPSVKSETALFIARALTRTQPTALNKK  172 (242)
T ss_dssp             HHHHHHGGGCCCHHHHHHHHHHHHHHHTTS-CH------HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCCGGGCCHH
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHHHHcC-CH------HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCCCccHH
Confidence            899999999999999999999999998732 11      125778888999999999999999999965432 221 111


Q ss_pred             HHHCCCcHHHHHhhcCCChHHHHHHHHHHHHhhc
Q 015851          287 VLAAGALQPVIGLLSSCCSESQREAALLLGQFAA  320 (399)
Q Consensus       287 ~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~  320 (399)
                      .+ ..+++.+..++.+.++++|..|..+++.++.
T Consensus       173 ~l-~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~  205 (242)
T 2qk2_A          173 LL-KLLTTSLVKTLNEPDPTVRDSSAEALGTLIK  205 (242)
T ss_dssp             HH-HHHHHHHHHHHTSSCHHHHHHHHHHHHHHHH
T ss_pred             HH-HHHHHHHHHHhcCCChHHHHHHHHHHHHHHH
Confidence            12 2578999999999999999999999999874

>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}

Probab=98.44  E-value=1.6e-05  Score=69.79  Aligned_cols=183  Identities=17%  Similarity=0.158  Sum_probs=136.5

Q ss_pred             HHHHHHHhccccCccccccHHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhhcCCh
Q 015851          160 SHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKND  239 (399)
Q Consensus       160 ~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~  239 (399)
                      ..+++.|.+.+.        ..++.++.-|..+.+.+......|...+|+..|+......+...+..++.+|.+|.. +.
T Consensus       121 ~~iiekL~~~~~--------~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~~~gN~q~Y~L~AL~~LM~-~v  191 (339)
T 3dad_A          121 NAILEKLYSSSG--------PELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAAADHNYQSYILRALGQLML-FV  191 (339)
T ss_dssp             HHHHHHHHHCCH--------HHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTTSCHHHHHHHHHHHHHHTT-SH
T ss_pred             HHHHHHHhcCCc--------HHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHhcChHHHHHHHHHHHHHHh-cc
Confidence            445566665544        567778888888555677777778899999999999999999999999999999998 56


Q ss_pred             hhHHHHH-hcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHHC----------CCcHHHHHhhc---CCCh
Q 015851          240 ENKNQIV-ECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAA----------GALQPVIGLLS---SCCS  305 (399)
Q Consensus       240 ~~~~~~~-~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~----------~~l~~L~~lL~---~~~~  305 (399)
                      ++...++ ...++..+..++.+.+..|...|+.+|-.++..++.+...+..+          ..++.++.+|+   +.+.
T Consensus       192 ~Gm~gvvs~~~fI~~lyslv~s~~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~  271 (339)
T 3dad_A          192 DGMLGVVAHSDTIQWLYTLCASLSRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADP  271 (339)
T ss_dssp             HHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCH
T ss_pred             ccccchhCCHHHHHHHHHHHcCccHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCH
Confidence            6665665 46789999999998889999999999999997765444333221          24889999997   7788


Q ss_pred             HHHHHHHHHHHHhhccCh--hhHH----HHHhcCCHHHHHHhhCCC--CHHHHH
Q 015851          306 ESQREAALLLGQFAATDS--DCKV----HIVQRGAVRPLIEMLQSP--DVQLRE  351 (399)
Q Consensus       306 ~v~~~a~~~L~~l~~~~~--~~~~----~l~~~g~v~~L~~ll~~~--~~~v~~  351 (399)
                      +++.+|...|..+....+  +.+.    .+.+.|+-..+...+...  ++++++
T Consensus       272 elq~~amtLIN~lL~~apd~d~~~di~d~Le~~gi~~~i~r~l~~~~~~~~l~~  325 (339)
T 3dad_A          272 ELLVYTVTLINKTLAALPDQDSFYDVTDALEQQGMEALVQRHLGTAGTDVDLRT  325 (339)
T ss_dssp             HHHHHHHHHHHHHHHHCSSHHHHHHHHHHHHHTTHHHHHHHHHSCTTSCHHHHH
T ss_pred             HHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHccHHHHHHHHHhccCCCHHHHH
Confidence            999998887777665544  2122    234466666777777653  555543

>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N

Probab=98.43  E-value=9.9e-05  Score=74.21  Aligned_cols=276  Identities=15%  Similarity=0.133  Sum_probs=174.6

Q ss_pred             HHHHhhhhhcch-hhhHHHHHHHHHHHHHHcCChhHHHHHHhCCChHHHHhcccCCCCcccccCCCcchHHHHHHHHHHH
Q 015851           62 QVNVLNTTFSWL-EADRAAAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFAL  140 (399)
Q Consensus        62 ~~~~L~~~l~~~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~~~~~a~~~L  140 (399)
                      .+..|...+... +.++.++..|+..|+-+..+... .      ++..|...|.+.+....    ....+.++..|+..|
T Consensus       393 gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~-~------~~~lL~~~L~~~~~~~~----~~~~~~ir~gAaLGL  461 (963)
T 4ady_A          393 GKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGR-D------TTDYLKNIIVENSGTSG----DEDVDVLLHGASLGI  461 (963)
T ss_dssp             HHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTH-H------HHHHHHHHHHHHSSCCS----CHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcH-H------HHHHHHHHHcCcccccc----ccccHHHHHHHHHHH
Confidence            455566655311 45677888999999988775332 1      36677777765441000    000136788899999


Q ss_pred             HHhcCChhhHHHHHhcCcHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhh-cCC
Q 015851          141 GLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELL-EFT  219 (399)
Q Consensus       141 ~~l~~~~~~~~~i~~~~~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll-~~~  219 (399)
                      +.........+      +++.|...+.+.+.        .+.+.++.+|+.+..+..+.       .++..|+..+ .+.
T Consensus       462 Gla~~GS~~ee------v~e~L~~~L~dd~~--------~~~~~AalALGli~vGTgn~-------~ai~~LL~~~~e~~  520 (963)
T 4ady_A          462 GLAAMGSANIE------VYEALKEVLYNDSA--------TSGEAAALGMGLCMLGTGKP-------EAIHDMFTYSQETQ  520 (963)
T ss_dssp             HHHSTTCCCHH------HHHHHHHHHHTCCH--------HHHHHHHHHHHHHHTTCCCH-------HHHHHHHHHHHHCS
T ss_pred             HHHhcCCCCHH------HHHHHHHHHhcCCH--------HHHHHHHHHHhhhhcccCCH-------HHHHHHHHHHhccC
Confidence            99763222221      46677777775543        45567777887764332221       1133344433 455


Q ss_pred             CHHHHHHHHHHHHHhhcCChhhHHHHHhcCCHHHHHHhhc-CCCHHHHHHHHHHHHHhhcCChhHHHHHHHCCCcHHHHH
Q 015851          220 DTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLR-SEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIG  298 (399)
Q Consensus       220 ~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~L~~ll~-~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~  298 (399)
                      +..+++.++.+|+.+..+.++         .++.++..|. +.++-+|..++.+++--..+..+.       ..++.|++
T Consensus       521 ~e~vrR~aalgLGll~~g~~e---------~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn~-------~aIq~LL~  584 (963)
T 4ady_A          521 HGNITRGLAVGLALINYGRQE---------LADDLITKMLASDESLLRYGGAFTIALAYAGTGNN-------SAVKRLLH  584 (963)
T ss_dssp             CHHHHHHHHHHHHHHTTTCGG---------GGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCH-------HHHHHHHH
T ss_pred             cHHHHHHHHHHHHhhhCCChH---------HHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCH-------HHHHHHHH
Confidence            788999999999999876655         3566666665 578899999998887655443332       13565666


Q ss_pred             hhc-CCChHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHh-hCCCCHHHHHHHHHHHHHhhccCCC-CcchhHHHH
Q 015851          299 LLS-SCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEM-LQSPDVQLREMSAFALGRLAQVITV-SVLPAILIF  375 (399)
Q Consensus       299 lL~-~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~v~~L~~l-l~~~~~~v~~~a~~~L~~l~~~~~~-~~~~~~~~~  375 (399)
                      .+. +.+..+|..|+.+|+.+..++++         .++.++.+ +++.++.+|..|..+|+.++...++ .++..+.. 
T Consensus       585 ~~~~d~~d~VRraAViaLGlI~~g~~e---------~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~~~aid~L~~-  654 (963)
T 4ady_A          585 VAVSDSNDDVRRAAVIALGFVLLRDYT---------TVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGLQSAIDVLDP-  654 (963)
T ss_dssp             HHHHCSCHHHHHHHHHHHHHHTSSSCS---------SHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCCHHHHHHHHH-
T ss_pred             HhccCCcHHHHHHHHHHHHhhccCCHH---------HHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCcHHHHHHHHH-
Confidence            654 56678999999999998766542         35556664 4678999999999999999977764 22332222 


Q ss_pred             HhhccccHHHHHHHHhhhHhh
Q 015851          376 IIINECQLEVLAFVLSEMVLL  396 (399)
Q Consensus       376 ~~~~~~~~~~~~~~l~~~~~~  396 (399)
                       +..+....|....+.++..+
T Consensus       655 -L~~D~d~~Vrq~Ai~ALG~I  674 (963)
T 4ady_A          655 -LTKDPVDFVRQAAMIALSMI  674 (963)
T ss_dssp             -HHTCSSHHHHHHHHHHHHHH
T ss_pred             -HccCCCHHHHHHHHHHHHHH
Confidence             34555566666655555443

>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16

Probab=98.33  E-value=4.6e-08  Score=75.78  Aligned_cols=122  Identities=19%  Similarity=0.171  Sum_probs=88.6

Q ss_pred             hCCChHHHHhcccCCCCcccccCCCcchHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHHHhccccCccccccHHH
Q 015851          102 EGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSV  181 (399)
Q Consensus       102 ~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~~~i~~L~~~L~~~~~~~~~~~~~~~  181 (399)
                      ....++.+..+|++++..            +|..|+++|+.+...           .++.|+..|++.+.        .+
T Consensus        10 ~~~~~~~l~~~L~~~~~~------------vR~~A~~~L~~~~~~-----------~~~~L~~~L~d~~~--------~v   58 (131)
T 1te4_A           10 HSSGLVPRGSHMADENKW------------VRRDVSTALSRMGDE-----------AFEPLLESLSNEDW--------RI   58 (131)
T ss_dssp             -----------CCSSCCC------------SSSSCCSSTTSCSST-----------THHHHHHGGGCSCH--------HH
T ss_pred             ccccHHHHHHHhcCCCHH------------HHHHHHHHHHHhCch-----------HHHHHHHHHcCCCH--------HH
Confidence            345678889999988774            445788888776532           26888899986554        89


Q ss_pred             HHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhhHHHHHhcCCHHHHHHhhcCC
Q 015851          182 IRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSE  261 (399)
Q Consensus       182 ~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~L~~ll~~~  261 (399)
                      +..++++|+++..           ...++.|+.++.++++.++..|+++|+++..  +         ..++.|+.+++++
T Consensus        59 R~~A~~aL~~~~~-----------~~a~~~L~~~L~d~~~~VR~~A~~aL~~~~~--~---------~a~~~L~~~l~d~  116 (131)
T 1te4_A           59 RGAAAWIIGNFQD-----------ERAVEPLIKLLEDDSGFVRSGAARSLEQIGG--E---------RVRAAMEKLAETG  116 (131)
T ss_dssp             HHHHHHHHGGGCS-----------HHHHHHHHHHHHHCCTHHHHHHHHHHHHHCS--H---------HHHHHHHHHTTSC
T ss_pred             HHHHHHHHHhcCC-----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc--H---------HHHHHHHHHHhCC
Confidence            9999999988762           1237889999999999999999999999863  2         3578899999999


Q ss_pred             CHHHHHHHHHHHHHh
Q 015851          262 DSAIHYEAVGVIGNL  276 (399)
Q Consensus       262 ~~~v~~~a~~~L~~l  276 (399)
                      ++.++..|+++|+.|
T Consensus       117 ~~~vr~~A~~aL~~i  131 (131)
T 1te4_A          117 TGFARKVAVNYLETH  131 (131)
T ss_dssp             CTHHHHHHHHHGGGC
T ss_pred             CHHHHHHHHHHHHhC
Confidence            999999999998754

>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}

Probab=98.32  E-value=1.1e-06  Score=76.01  Aligned_cols=183  Identities=10%  Similarity=0.141  Sum_probs=126.2

Q ss_pred             hhhHHHHHHHHHHHHH-HcCC-hhHHHHHHh-CCChHHHHhcc-cCCCCcccccCCCcchHHHHHHHHHHHHHhcC--C-
Q 015851           74 EADRAAAKRATHVLAE-LAKN-EEVVNWIVE-GGAVPALVKHL-QAPPTSEADRNLKPFEHEVEKGSAFALGLLAV--K-  146 (399)
Q Consensus        74 ~~~~~~~~~a~~~L~~-l~~~-~~~~~~~~~-~g~l~~L~~lL-~~~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~--~-  146 (399)
                      +.+...|..|+..|.. +..+ +.......+ ..++..|...+ .+.+.            .++..|+.+|+.++.  . 
T Consensus        27 s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~------------~v~~~A~~al~~la~~l~~   94 (249)
T 2qk1_A           27 SSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANI------------QAVALAAQSVELICDKLKT   94 (249)
T ss_dssp             CSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCH------------HHHHHHHHHHHHHHHHHCT
T ss_pred             cCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCH------------HHHHHHHHHHHHHHHhccc
Confidence            3466778899999999 8643 322100001 13466777788 55555            788899999999992  2 


Q ss_pred             hhhH-HHHHhcCcHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhhcCCCHHHHH
Q 015851          147 PEHQ-QLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQR  225 (399)
Q Consensus       147 ~~~~-~~i~~~~~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~  225 (399)
                      +... .....  .++.++..+++...        .++..+..++..++...+.......-...++.|...|.+.++.++.
T Consensus        95 ~~f~~~y~~~--llp~ll~~l~dkk~--------~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k~~~vk~  164 (249)
T 2qk1_A           95 PGFSKDYVSL--VFTPLLDRTKEKKP--------SVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHKTPQIRM  164 (249)
T ss_dssp             TTSCHHHHHH--HHHHHHHGGGCCCH--------HHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCSSHHHHH
T ss_pred             ccccHHHHHH--HHHHHHHHHcCCCH--------HHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCCChHHHH
Confidence            3333 33222  67888888876655        7888888888888864321110000123567788899999999999


Q ss_pred             HHHHHHHHhhcCChh---hHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhc
Q 015851          226 AAAGALRTLAFKNDE---NKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVH  278 (399)
Q Consensus       226 ~a~~~L~~L~~~~~~---~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~  278 (399)
                      .++.+|..+....+.   .....+...++|.+.+++.+.++++|..|..+++.++.
T Consensus       165 ~al~~l~~~~~~~~~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~  220 (249)
T 2qk1_A          165 ECTQLFNASMKEEKDGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIK  220 (249)
T ss_dssp             HHHHHHHHHHHHCCSCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence            999999999974432   12223325689999999999999999999999999873

>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}

Probab=98.31  E-value=2.6e-05  Score=70.30  Aligned_cols=219  Identities=14%  Similarity=0.070  Sum_probs=104.6

Q ss_pred             HHHHhcccCCCCcccccCCCcchHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHHHhccccCccccccHHHHHHHH
Q 015851          107 PALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAA  186 (399)
Q Consensus       107 ~~L~~lL~~~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~~~i~~L~~~L~~~~~~~~~~~~~~~~~~a~  186 (399)
                      ..+++++.+.+.            .+|+-.--.+.+++..++-  .+   =++..+.+=+++.++        -++-.|+
T Consensus        71 ~~v~kl~~s~d~------------~lKrLvYLyl~~~~~~~~e--~i---Lv~Nsl~kDl~~~N~--------~iR~lAL  125 (355)
T 3tjz_B           71 FAMTKLFQSNDP------------TLRRMCYLTIKEMSCIAED--VI---IVTSSLTKDMTGKED--------SYRGPAV  125 (355)
T ss_dssp             HHHHGGGGCCCH------------HHHHHHHHHHHHHTTTSSC--GG---GGHHHHHHHHHSSCH--------HHHHHHH
T ss_pred             HHHHHHhcCCCH------------HHHHHHHHHHHHhCCCHHH--HH---HHHHHHHhhcCCCcH--------hHHHHHH
Confidence            344556665554            5555555555555533211  11   123344444444333        5555666


Q ss_pred             HHHHHHhhcCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhhHHHHHhcCCHHHHHHhhcCCCHHHH
Q 015851          187 DAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIH  266 (399)
Q Consensus       187 ~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~  266 (399)
                      ++|+++.. .+- -     ....+.+...+.+.++.|+..|+-+...|....++..    + ++++.+-.++.+.++.+.
T Consensus       126 RtL~~I~~-~~m-~-----~~l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~pe~v----~-~~~~~l~~ll~d~n~~V~  193 (355)
T 3tjz_B          126 RALCQITD-STM-L-----QAIERYMKQAIVDKVPSVSSSALVSSLHLLKCSFDVV----K-RWVNEAQEAASSDNIMVQ  193 (355)
T ss_dssp             HHHHHHCC-TTT-H-----HHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTTCHHHH----H-TTHHHHHHHTTCSSHHHH
T ss_pred             HHHhcCCC-HHH-H-----HHHHHHHHHHcCCCCHHHHHHHHHHHHHHhccCHHHH----H-HHHHHHHHHhcCCCccHH
Confidence            66666652 111 1     1123445556666666666666666666665444422    1 355666666666666666


Q ss_pred             HHHHHHHHHhhcCChhHHHHH--------------------------------HHCCCcHHHHHhhcCCChHHHHHHHHH
Q 015851          267 YEAVGVIGNLVHSSPNIKKEV--------------------------------LAAGALQPVIGLLSSCCSESQREAALL  314 (399)
Q Consensus       267 ~~a~~~L~~l~~~~~~~~~~~--------------------------------~~~~~l~~L~~lL~~~~~~v~~~a~~~  314 (399)
                      .+|+.+|..+...+......+                                .....++.+..+|++.++.|.-+|+.+
T Consensus       194 ~~Al~lL~ei~~~d~~a~~kLv~~l~~~~l~~~~~q~~llr~l~~~~~~d~~~~~~~~~~~l~~~L~~~~~aVvyEa~k~  273 (355)
T 3tjz_B          194 YHALGLLYHVRKNDRLAVSKMISKFTRHGLKSPFAYCMMIRVASRQLEDEDGSRDSPLFDFIESCLRNKHEMVVYEAASA  273 (355)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHSSCCSCHHHHHHHHHHHTCC-----------------CCCCCSSHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhchHHHHHHHHHHhcCCCcChHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHcCCChHHHHHHHHH
Confidence            666666666654322110000                                112345556666667777788888888


Q ss_pred             HHHhhccChhhHHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhccCCCC
Q 015851          315 LGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQVITVS  367 (399)
Q Consensus       315 L~~l~~~~~~~~~~l~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~  367 (399)
                      |..+......    .. ..++..|..++.++++.+|-.|...|..++...|..
T Consensus       274 I~~l~~~~~~----~~-~~a~~~L~~fLss~d~niryvaLr~L~~l~~~~P~~  321 (355)
T 3tjz_B          274 IVNLPGCSAK----EL-APAVSVLQLFCSSPKAALRYAAVRTLNKVAMKHPSA  321 (355)
T ss_dssp             HTC----------------CCCTHHHHHHSSSSSSHHHHHHCC----------
T ss_pred             HHhccCCCHH----HH-HHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHCcHH
Confidence            8777532111    11 233556666777778888888888888888776653

>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}

Probab=98.17  E-value=1.3e-05  Score=72.30  Aligned_cols=230  Identities=11%  Similarity=0.032  Sum_probs=91.8

Q ss_pred             hhHHHHHHHHHHHHHHcCChhHHHHHHhCCChHHHHhcccCCCCcccccCCCcchHHHHHHHHHHHHHhc-CChhhHHHH
Q 015851           75 ADRAAAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA-VKPEHQQLI  153 (399)
Q Consensus        75 ~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~~~~~a~~~L~~l~-~~~~~~~~i  153 (399)
                      .++.+|-.|+++|+++...+-. ..     +.+.+.+.|.+.++            .+|..|+.+..++. ..|+..+  
T Consensus       116 ~N~~iR~lALRtL~~I~~~~m~-~~-----l~~~lk~~L~d~~p------------yVRk~A~l~~~kL~~~~pe~v~--  175 (355)
T 3tjz_B          116 KEDSYRGPAVRALCQITDSTML-QA-----IERYMKQAIVDKVP------------SVSSSALVSSLHLLKCSFDVVK--  175 (355)
T ss_dssp             SCHHHHHHHHHHHHHHCCTTTH-HH-----HHHHHHHHHTCSSH------------HHHHHHHHHHHHHTTTCHHHHH--
T ss_pred             CcHhHHHHHHHHHhcCCCHHHH-HH-----HHHHHHHHcCCCCH------------HHHHHHHHHHHHHhccCHHHHH--
Confidence            4455566666666665442211 11     23344455555444            55556666666665 4444322  


Q ss_pred             HhcCcHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhhcCC---CHHHHHHHHHH
Q 015851          154 VDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFT---DTKVQRAAAGA  230 (399)
Q Consensus       154 ~~~~~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~---~~~v~~~a~~~  230 (399)
                         +++..+-+++.+.+.        -++..++.+|..+...+..         .+..++..+...   ++-.+...++.
T Consensus       176 ---~~~~~l~~ll~d~n~--------~V~~~Al~lL~ei~~~d~~---------a~~kLv~~l~~~~l~~~~~q~~llr~  235 (355)
T 3tjz_B          176 ---RWVNEAQEAASSDNI--------MVQYHALGLLYHVRKNDRL---------AVSKMISKFTRHGLKSPFAYCMMIRV  235 (355)
T ss_dssp             ---TTHHHHHHHTTCSSH--------HHHHHHHHHHHHHHTTCHH---------HHHHHHHHHHSSCCSCHHHHHHHHHH
T ss_pred             ---HHHHHHHHHhcCCCc--------cHHHHHHHHHHHHHhhchH---------HHHHHHHHHhcCCCcChHHHHHHHHH
Confidence               355555555554443        4555555556555543321         111122222221   23333333333


Q ss_pred             HHHhhcCChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHHCCCcHHHHHhhcCCChHHHHH
Q 015851          231 LRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQRE  310 (399)
Q Consensus       231 L~~L~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~  310 (399)
                      +..+...++    .-.....++.+..+|++.++.|..+|+.++..+......    . -..++..+..++.++++.++-.
T Consensus       236 l~~~~~~d~----~~~~~~~~~~l~~~L~~~~~aVvyEa~k~I~~l~~~~~~----~-~~~a~~~L~~fLss~d~niryv  306 (355)
T 3tjz_B          236 ASRQLEDED----GSRDSPLFDFIESCLRNKHEMVVYEAASAIVNLPGCSAK----E-LAPAVSVLQLFCSSPKAALRYA  306 (355)
T ss_dssp             HTCC---------------------CCCCCSSHHHHHHHHHHHTC----------------CCCTHHHHHHSSSSSSHHH
T ss_pred             HHHhccccc----hhhHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCHH----H-HHHHHHHHHHHHcCCCchHHHH
Confidence            333332110    001234556677777788899999999999988542111    1 1345677778888888899999


Q ss_pred             HHHHHHHhhccChhhHHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHH
Q 015851          311 AALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALG  358 (399)
Q Consensus       311 a~~~L~~l~~~~~~~~~~l~~~g~v~~L~~ll~~~~~~v~~~a~~~L~  358 (399)
                      |+..|..+....|.....     +-..+.+++.+++..+...|..+|.
T Consensus       307 aLr~L~~l~~~~P~~v~~-----~n~~ie~li~d~n~sI~t~Aittll  349 (355)
T 3tjz_B          307 AVRTLNKVAMKHPSAVTA-----CNLDLENLVTDANRSIATLAITTLL  349 (355)
T ss_dssp             HHHCC-------------------------------------------
T ss_pred             HHHHHHHHHHHCcHHHHH-----HHHHHHHHccCCcHhHHHHHHHHhh
Confidence            999998888655533221     3446778888888888777766554

>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}

Probab=98.16  E-value=4.9e-05  Score=66.78  Aligned_cols=156  Identities=15%  Similarity=0.125  Sum_probs=125.6

Q ss_pred             HHHHHhhcCCCHHHHHHHHHHHHHhhcCChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHH-
Q 015851          210 PPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVL-  288 (399)
Q Consensus       210 ~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~-  288 (399)
                      ..+++.|.+.+.+.++.++.-|..+...+.+...+++..+++..|+++....+...+..++.++.++..+ ......++ 
T Consensus       121 ~~iiekL~~~~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~~~gN~q~Y~L~AL~~LM~~-v~Gm~gvvs  199 (339)
T 3dad_A          121 NAILEKLYSSSGPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAAADHNYQSYILRALGQLMLF-VDGMLGVVA  199 (339)
T ss_dssp             HHHHHHHHHCCHHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTTSCHHHHHHHHHHHHHHTTS-HHHHHHHHH
T ss_pred             HHHHHHHhcCCcHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHhcChHHHHHHHHHHHHHHhc-cccccchhC
Confidence            3456677788888899999999995555789999999999999999999999999999999999999864 44554555 


Q ss_pred             HCCCcHHHHHhhcCCChHHHHHHHHHHHHhhccChhhHHHHHhc----------CCHHHHHHhhC---CCCHHHHHHHHH
Q 015851          289 AAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQR----------GAVRPLIEMLQ---SPDVQLREMSAF  355 (399)
Q Consensus       289 ~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~----------g~v~~L~~ll~---~~~~~v~~~a~~  355 (399)
                      ...++..+..++.+....+.+.|+..|..++..++.+...+.+.          .-++.|+.+|+   +.+.+++..|..
T Consensus       200 ~~~fI~~lyslv~s~~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~elq~~amt  279 (339)
T 3dad_A          200 HSDTIQWLYTLCASLSRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADPELLVYTVT  279 (339)
T ss_dssp             CHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHHHHHHHH
T ss_pred             CHHHHHHHHHHHcCccHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHHHHHHHHH
Confidence            44578899999998888999999999999988766554444331          13678999997   689999999998


Q ss_pred             HHHHhhccCCC
Q 015851          356 ALGRLAQVITV  366 (399)
Q Consensus       356 ~L~~l~~~~~~  366 (399)
                      .|-.+-...+.
T Consensus       280 LIN~lL~~apd  290 (339)
T 3dad_A          280 LINKTLAALPD  290 (339)
T ss_dssp             HHHHHHHHCSS
T ss_pred             HHHHHHhcCCC
Confidence            88877776664

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=98.11  E-value=0.0021  Score=65.47  Aligned_cols=259  Identities=19%  Similarity=0.193  Sum_probs=177.7

Q ss_pred             hHHHHhhhhhcchhhhHHHHHHHHHHHHHHcCC----hhHHHHHHhCCChHHHHhcccCCCCcccccCCCcchHHHHHHH
Q 015851           61 AQVNVLNTTFSWLEADRAAAKRATHVLAELAKN----EEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGS  136 (399)
Q Consensus        61 ~~~~~L~~~l~~~~~~~~~~~~a~~~L~~l~~~----~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~~~~~a  136 (399)
                      .+++.|.+.+..+.+.    +.|+..+..++..    +..-..++  +.++.++..+.+...            .+|..|
T Consensus        54 ~~~~~~~~~~~~k~~~----~~a~~~~~~~~~~~~~~~~~e~~~~--~~~~~~~~~~~dk~~------------~v~~aa  115 (986)
T 2iw3_A           54 HFFGELAKGIKDKKTA----ANAMQAVAHIANQSNLSPSVEPYIV--QLVPAICTNAGNKDK------------EIQSVA  115 (986)
T ss_dssp             HHHHHHHHHHTSHHHH----HHHHHHHHHHTCTTTCCTTTHHHHH--TTHHHHHHHTTCSSH------------HHHHHH
T ss_pred             hHHHHHHHHHhccCCH----HHHHHHHHHHHHhcCCCCCcccchH--HHHHHHHHHhcCCch------------HHHHHH
Confidence            4566666655433222    6899999999853    12212222  678888888877665            688888


Q ss_pred             HHHHHHhc--CChhhHHHHHhcCcHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHH
Q 015851          137 AFALGLLA--VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVE  214 (399)
Q Consensus       137 ~~~L~~l~--~~~~~~~~i~~~~~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~  214 (399)
                      ..+...+.  .+|....     ..+|.|+..|.....       |.....++.++..|+...+ .+....-...+|.+.+
T Consensus       116 ~~~~~~~~~~~~~~a~~-----~~~~~~~~~~~~~~k-------w~~k~~~l~~~~~~~~~~~-~~~~~~~~~~~p~~~~  182 (986)
T 2iw3_A          116 SETLISIVNAVNPVAIK-----ALLPHLTNAIVETNK-------WQEKIAILAAFSAMVDAAK-DQVALRMPELIPVLSE  182 (986)
T ss_dssp             HHHHHHHHHHSCGGGHH-----HHHHHHHHHHHHCCC-------HHHHHHHHHHHHHHHHHSH-HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCHHHHH-----HHHHHHHHHhccccc-------hHHHHHHHHHHHHHHHHhH-HHHHHhccchhcchHh
Confidence            88888877  4554432     258999999976543       3788889999999996553 2222334578999999


Q ss_pred             hhcCCCHHHHHHHHHHHHHhhc--CChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCC--hhHHHHHHHC
Q 015851          215 LLEFTDTKVQRAAAGALRTLAF--KNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSS--PNIKKEVLAA  290 (399)
Q Consensus       215 ll~~~~~~v~~~a~~~L~~L~~--~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~--~~~~~~~~~~  290 (399)
                      .+.+..+++...|..++-.++.  +|.+.      ...+|.|++.+.+++.  ...+...|+..+.-.  +.-.-.+   
T Consensus       183 ~~~d~k~~v~~~~~~~~~~~~~~~~n~d~------~~~~~~~~~~~~~p~~--~~~~~~~l~~~tfv~~v~~~~l~~---  251 (986)
T 2iw3_A          183 TMWDTKKEVKAAATAAMTKATETVDNKDI------ERFIPSLIQCIADPTE--VPETVHLLGATTFVAEVTPATLSI---  251 (986)
T ss_dssp             HTTCSSHHHHHHHHHHHHHHGGGCCCTTT------GGGHHHHHHHHHCTTH--HHHHHHHHTTCCCCSCCCHHHHHH---
T ss_pred             hcccCcHHHHHHHHHHHHHHHhcCCCcch------hhhHHHHHHHhcChhh--hHHHHHHhhcCeeEeeecchhHHH---
Confidence            9999999999999999988886  22222      2479999999998744  444555555544321  1221222   


Q ss_pred             CCcHHHHHhhcCCChHHHHHHHHHHHHhhcc--ChhhHHHHHhcCCHHHHHHhhC-CCCHHHHHHHHHHHHHhhcc
Q 015851          291 GALQPVIGLLSSCCSESQREAALLLGQFAAT--DSDCKVHIVQRGAVRPLIEMLQ-SPDVQLREMSAFALGRLAQV  363 (399)
Q Consensus       291 ~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~--~~~~~~~l~~~g~v~~L~~ll~-~~~~~v~~~a~~~L~~l~~~  363 (399)
                       .+|.|.+-|......+++.++.++.|||.-  +|.....++ ..++|-|.+... -.+|++|+.|..++..|-+.
T Consensus       252 -~~p~l~r~l~~~~~~~~r~~~~~~~n~~~lv~~~~~~~~f~-~~l~p~~~~~~~~~~~pe~r~~~~~a~~~l~~~  325 (986)
T 2iw3_A          252 -MVPLLSRGLNERETGIKRKSAVIIDNMCKLVEDPQVIAPFL-GKLLPGLKSNFATIADPEAREVTLRALKTLRRV  325 (986)
T ss_dssp             -HHHHHHHHHTSSSHHHHHHHHHHHHHHHTTCCCHHHHHHHH-TTTHHHHHHHTTTCCSHHHHHHHHHHHHHHHHH
T ss_pred             -HHHHHHhhhccCcchhheeeEEEEcchhhhcCCHHHHhhhh-hhhhhHHHHHhhccCCHHHHHHHHHHHHHHHHh
Confidence             367777888888889999999999999964  333333333 346777777664 47999999999888888543

>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}

Probab=97.95  E-value=0.0022  Score=53.80  Aligned_cols=206  Identities=12%  Similarity=0.112  Sum_probs=141.1

Q ss_pred             HHHHHHHHHHHHHHcCC-hhHHHHHHhC-CChHHHHhcccCCCCcccccCCCcchH-HHHHHHHHHHHHhcCChhhHHHH
Q 015851           77 RAAAKRATHVLAELAKN-EEVVNWIVEG-GAVPALVKHLQAPPTSEADRNLKPFEH-EVEKGSAFALGLLAVKPEHQQLI  153 (399)
Q Consensus        77 ~~~~~~a~~~L~~l~~~-~~~~~~~~~~-g~l~~L~~lL~~~~~~~~~~~~~~~~~-~~~~~a~~~L~~l~~~~~~~~~i  153 (399)
                      ++.|+.|+..|+.--.. ++....+... |.+..|++=+-+..+..... ..+... .-..+|...|..+|.+|+.|..+
T Consensus        15 p~~Re~AL~eLsk~Re~~~~La~~LW~S~Gtia~LLQEIisiYp~lspp-~Lt~~~SnRVcnaLaLlQcvAshpetr~~F   93 (268)
T 2fv2_A           15 PETRENALLELSKKRESVPDLAPMLWHSFGTIAALLQEIVNIYPSINPP-TLTAHQSNRVCNALALLQCVASHPETRSAF   93 (268)
T ss_dssp             TTTHHHHHHHHHHHTTTCTTHHHHHHHSTTHHHHHHHHHHHTGGGBTTB-CCCHHHHHHHHHHHHHHHHHHHCTTTHHHH
T ss_pred             chhHHHHHHHHHHhhhccccHHHHHHhccCHHHHHHHHHHHHcccCCCc-ccCHHHHhHHHHHHHHHHHHHcCcchhhHH
Confidence            34578888888876654 6655566655 66666654222211111000 000111 22356777778888999999999


Q ss_pred             HhcCcHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhh-cCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHH
Q 015851          154 VDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAH-ENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALR  232 (399)
Q Consensus       154 ~~~~~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~-~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~  232 (399)
                      .++.+.-.|.-+|+..+.....+   -++-.++++++.+.. +++++-..+...+.+|.+++.++.+++-.+..|...+.
T Consensus        94 l~a~iplyLyPfL~t~sk~r~fE---~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiiplCLrime~GselSKtvAtfIlq  170 (268)
T 2fv2_A           94 LAAHIPLFLYPFLHTVSKTRPFE---YLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCLRIMESGSELSKTVATFILQ  170 (268)
T ss_dssp             HHTTGGGGTHHHHHCCCCSHHHH---HHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred             HHccchHHhhhhhccccCCCcch---hhhhhHHHHHHHHhccCcHHHHHHHHhhhHHHHHHHHHhhccHHHHHHHHHHHH
Confidence            99998888888888776554332   678889999999996 44556666778899999999999999999999999999


Q ss_pred             HhhcCChhhHHHHHhc--------CCHHHHH-HhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHH
Q 015851          233 TLAFKNDENKNQIVEC--------NALPTLI-LMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVL  288 (399)
Q Consensus       233 ~L~~~~~~~~~~~~~~--------~~~~~L~-~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~  288 (399)
                      .+.. ++.+-..++..        .++..++ .+.+++++.+.++.+++-..++.+ +..+..+.
T Consensus       171 KIL~-dd~GL~YiC~t~eRF~av~~vL~~mV~~l~~~ps~RLLKhiircYlRLsdn-~rar~aL~  233 (268)
T 2fv2_A          171 KILL-DDTGLAYICQTYERFSHVAMILGKMVLQLSKEPSARLLKHVVRCYLRLSDN-PRAREALR  233 (268)
T ss_dssp             HHHH-SHHHHHHHTSSHHHHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTS-HHHHHHHH
T ss_pred             HHhc-cchhHHHHHccHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcC-HHHHHHHH
Confidence            9997 56666655541        1222222 334567889999999999999853 55555443

>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}

Probab=97.59  E-value=0.0012  Score=55.47  Aligned_cols=177  Identities=13%  Similarity=0.174  Sum_probs=126.5

Q ss_pred             HHHHHHHHHHHcCChhHHHHHHhCCChHHHHhcccCCCCcccccCCCcchHHHHHHHHHHHHHhc--CChhhHHHHHhcC
Q 015851           80 AKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA--VKPEHQQLIVDNG  157 (399)
Q Consensus        80 ~~~a~~~L~~l~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~~~~~a~~~L~~l~--~~~~~~~~i~~~~  157 (399)
                      ...|+..|-.+++||+.|..|.+..+.-.|..+|+..+..      .+|+ -+|..++.+++.+.  ++++....+.+.+
T Consensus        73 VcnaLaLlQcvAshpetr~~Fl~a~iplyLyPfL~t~sk~------r~fE-~LRLtsLGVIgaLvK~dd~eVi~fLL~tE  145 (268)
T 2fv2_A           73 VCNALALLQCVASHPETRSAFLAAHIPLFLYPFLHTVSKT------RPFE-YLRLTSLGVIGALVKTDEQEVINFLLTTE  145 (268)
T ss_dssp             HHHHHHHHHHHHHCTTTHHHHHHTTGGGGTHHHHHCCCCS------HHHH-HHHHHHHHHHHHHGGGCCHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHcCcchhhHHHHccchHHhhhhhccccCC------Ccch-hhhhhHHHHHHHHhccCcHHHHHHHHhhh
Confidence            4577777888899999999999999999999999876542      2222 78999999999999  7788888889999


Q ss_pred             cHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhhcCchhHH------HHHh-cCChHH-HHHhhcCCCHHHHHHHHH
Q 015851          158 ALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKT------RVRM-EGGIPP-LVELLEFTDTKVQRAAAG  229 (399)
Q Consensus       158 ~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~------~~~~-~~~i~~-L~~ll~~~~~~v~~~a~~  229 (399)
                      ++|..++.++.+++        --+..|..++..+..++.....      .+.. ..++.. +..+.+++++.+..+..+
T Consensus       146 iiplCLrime~Gse--------lSKtvAtfIlqKIL~dd~GL~YiC~t~eRF~av~~vL~~mV~~l~~~ps~RLLKhiir  217 (268)
T 2fv2_A          146 IIPLCLRIMESGSE--------LSKTVATFILQKILLDDTGLAYICQTYERFSHVAMILGKMVLQLSKEPSARLLKHVVR  217 (268)
T ss_dssp             HHHHHHHHHHHSCH--------HHHHHHHHHHHHHHHSHHHHHHHTSSHHHHHHHHHHHHHHHHHTTTSCCHHHHHHHHH
T ss_pred             HHHHHHHHHhhccH--------HHHHHHHHHHHHHhccchhHHHHHccHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHH
Confidence            99999999998876        4445566666666644432221      1111 122322 334456788999999999


Q ss_pred             HHHHhhcCChhhHHHHHhc-------CCHHHHHHhhcCCCHHHHHHHHHHHHHh
Q 015851          230 ALRTLAFKNDENKNQIVEC-------NALPTLILMLRSEDSAIHYEAVGVIGNL  276 (399)
Q Consensus       230 ~L~~L~~~~~~~~~~~~~~-------~~~~~L~~ll~~~~~~v~~~a~~~L~~l  276 (399)
                      +-..|+. ++..++.+...       |.+.   .++ .+|+.++.+-...+.|+
T Consensus       218 cYlRLsd-n~rar~aL~~~LP~~Lrd~tf~---~~l-~~D~~~k~~l~qLl~n~  266 (268)
T 2fv2_A          218 CYLRLSD-NPRAREALRQCLPDQLKDTTFA---QVL-KDDTTTKRWLAQLVKNL  266 (268)
T ss_dssp             HHHHHTT-SHHHHHHHHHHSCGGGTSSTTH---HHH-TSCHHHHHHHHHHHHHS
T ss_pred             HHHHHhc-CHHHHHHHHHhCcHHhhChHHH---HHH-hcCHHHHHHHHHHHHhc
Confidence            9999998 78777766542       2222   222 35778887777777766

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=97.59  E-value=0.0029  Score=64.40  Aligned_cols=259  Identities=13%  Similarity=0.131  Sum_probs=168.2

Q ss_pred             HHHHHHHHHHHcCChhHHHHHHhCCChHHHHhcccCCCCcccccCCCcchHHHHHHHHHHHHHhcCC----hhhHHHHHh
Q 015851           80 AKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVK----PEHQQLIVD  155 (399)
Q Consensus        80 ~~~a~~~L~~l~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~~----~~~~~~i~~  155 (399)
                      +..|...+.++..+.... .....+++..+...+.+...            .  +.|+.++..++..    +..-..++ 
T Consensus        31 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~k~~------------~--~~a~~~~~~~~~~~~~~~~~e~~~~-   94 (986)
T 2iw3_A           31 RHEIASEVASFLNGNIIE-HDVPEHFFGELAKGIKDKKT------------A--ANAMQAVAHIANQSNLSPSVEPYIV-   94 (986)
T ss_dssp             HHHHHHHHHHHHTSSCSS-SSCCHHHHHHHHHHHTSHHH------------H--HHHHHHHHHHTCTTTCCTTTHHHHH-
T ss_pred             HHHHHHHHHHHHhccccc-cccchhHHHHHHHHHhccCC------------H--HHHHHHHHHHHHhcCCCCCcccchH-
Confidence            346666777765431100 01112566777777765322            1  5889999999822    22323333 


Q ss_pred             cCcHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhhcCC-CHHHHHHHHHHHHHh
Q 015851          156 NGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFT-DTKVQRAAAGALRTL  234 (399)
Q Consensus       156 ~~~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~-~~~v~~~a~~~L~~L  234 (399)
                       +.++.++....+...        .++..+-.++..+...-+....    ..++|.|+..|.+. .+..+..|+.++..|
T Consensus        95 -~~~~~~~~~~~dk~~--------~v~~aa~~~~~~~~~~~~~~a~----~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~  161 (986)
T 2iw3_A           95 -QLVPAICTNAGNKDK--------EIQSVASETLISIVNAVNPVAI----KALLPHLTNAIVETNKWQEKIAILAAFSAM  161 (986)
T ss_dssp             -TTHHHHHHHTTCSSH--------HHHHHHHHHHHHHHHHSCGGGH----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred             -HHHHHHHHHhcCCch--------HHHHHHHHHHHHHHHhCCHHHH----HHHHHHHHHHhccccchHHHHHHHHHHHHH
Confidence             467777777765554        6777777777777753332111    34588899988765 589999999999999


Q ss_pred             hcCChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHHCCCcHHHHHhhcCCChHHHHHHHHH
Q 015851          235 AFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALL  314 (399)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~  314 (399)
                      +...++.... .-..++|.+...+.+..++|...|..++..+|..-.+ ..   -..++|.|++.+..++.  ..++...
T Consensus       162 ~~~~~~~~~~-~~~~~~p~~~~~~~d~k~~v~~~~~~~~~~~~~~~~n-~d---~~~~~~~~~~~~~~p~~--~~~~~~~  234 (986)
T 2iw3_A          162 VDAAKDQVAL-RMPELIPVLSETMWDTKKEVKAAATAAMTKATETVDN-KD---IERFIPSLIQCIADPTE--VPETVHL  234 (986)
T ss_dssp             HHHSHHHHHH-HHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHGGGCCC-TT---TGGGHHHHHHHHHCTTH--HHHHHHH
T ss_pred             HHHhHHHHHH-hccchhcchHhhcccCcHHHHHHHHHHHHHHHhcCCC-cc---hhhhHHHHHHHhcChhh--hHHHHHH
Confidence            9744332222 2245899999999999999999999999999853211 11   13578999999988743  4455555


Q ss_pred             HHHhhccChhhHHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhccCCCC-----cchhHHHHH
Q 015851          315 LGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQVITVS-----VLPAILIFI  376 (399)
Q Consensus       315 L~~l~~~~~~~~~~l~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~-----~~~~~~~~~  376 (399)
                      |+.-+-........+.-  ++|.|.+-|......+.+.++-++.|+|+--++-     ++|+++--+
T Consensus       235 l~~~tfv~~v~~~~l~~--~~p~l~r~l~~~~~~~~r~~~~~~~n~~~lv~~~~~~~~f~~~l~p~~  299 (986)
T 2iw3_A          235 LGATTFVAEVTPATLSI--MVPLLSRGLNERETGIKRKSAVIIDNMCKLVEDPQVIAPFLGKLLPGL  299 (986)
T ss_dssp             HTTCCCCSCCCHHHHHH--HHHHHHHHHTSSSHHHHHHHHHHHHHHHTTCCCHHHHHHHHTTTHHHH
T ss_pred             hhcCeeEeeecchhHHH--HHHHHHhhhccCcchhheeeEEEEcchhhhcCCHHHHhhhhhhhhhHH
Confidence            55544333333333332  3788888888889999999999999999866542     566655444

>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5

Probab=97.43  E-value=0.00041  Score=59.14  Aligned_cols=14  Identities=7%  Similarity=-0.149  Sum_probs=9.1

Q ss_pred             hhhhHHHHHHHHHH
Q 015851           73 LEADRAAAKRATHV   86 (399)
Q Consensus        73 ~~~~~~~~~~a~~~   86 (399)
                      .++++.+|..++..
T Consensus        60 ~d~~~~VR~~AA~~   73 (244)
T 1lrv_A           60 ADPFWERRAIAVRY   73 (244)
T ss_dssp             TCSSHHHHHHHHTT
T ss_pred             cCCCHHHHHHHHHh
Confidence            45567777777763

>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A

Probab=97.33  E-value=0.0032  Score=65.30  Aligned_cols=276  Identities=13%  Similarity=0.081  Sum_probs=149.5

Q ss_pred             HHHHHHHHHHHHHcC-ChhHHHHHHhCCChHHHHhcccCCCCcccccCCCcchHHHHHHHHHHHHHhcCChhhHHHHHhc
Q 015851           78 AAAKRATHVLAELAK-NEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIVDN  156 (399)
Q Consensus        78 ~~~~~a~~~L~~l~~-~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~  156 (399)
                      .++..++.+|..+.. .++..... -..+++..++++.+....       .....++..++..+..++..+..+..+...
T Consensus       261 ~vk~~~~~~l~~l~~~~~~~f~~~-~~~~~~~~~~~l~~~~~~-------~~~~~~~~~al~fl~~~~~~~~~~~~~~~~  332 (960)
T 1wa5_C          261 KVKSSIQELVQLYTTRYEDVFGPM-INEFIQITWNLLTSISNQ-------PKYDILVSKSLSFLTAVTRIPKYFEIFNNE  332 (960)
T ss_dssp             HHHHHHHHHHHHHHHHCHHHHHHH-HHHHHHHHHHHHHHCCSC-------TTSHHHHHHHHHHHHHHHTSHHHHGGGCSH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhcCCC-------cCcHHHHHHHHHHHHHHhCcHhHHHHHcCc
Confidence            467788888888775 33322211 123455556665432110       112378889999999888655544332111


Q ss_pred             CcHHHHH-----HHHhcc-ccCc----c----------ccccHHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhh
Q 015851          157 GALSHLV-----NLLKRH-MDSN----C----------SRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELL  216 (399)
Q Consensus       157 ~~i~~L~-----~~L~~~-~~~~----~----------~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll  216 (399)
                      +.++.++     ..+.-. ++..    +          .......+..+..+|..++...+.   .+. ..+++.+...+
T Consensus       333 ~~l~~li~~~i~~~m~~~~~d~e~w~~dp~e~i~~d~e~~d~~s~R~aa~~~L~~l~~~~~~---~v~-~~~l~~i~~~l  408 (960)
T 1wa5_C          333 SAMNNITEQIILPNVTLREEDVELFEDDPIEYIRRDLEGSDTDTRRRACTDFLKELKEKNEV---LVT-NIFLAHMKGFV  408 (960)
T ss_dssp             HHHHHHHHHTHHHHHSCCGGGTTTTTTCHHHHHHHHHHC----CHHHHHHHHHHHHHHHCHH---HHH-HHHHHHHHHHH
T ss_pred             hHHHHHHHHHhHHhcCCCHHHHHHHhcCHHHHHHhccCcccccCcHHHHHHHHHHHHHHcch---hHH-HHHHHHHHHHH
Confidence            2334333     233210 0100    0          011124667778888888864431   111 12334444445


Q ss_pred             c------CCCHHHHHHHHHHHHHhhcCChhhHHHHHhc-----CCHHH----HHHhhcCC---CHHHHHHHHHHHHHhhc
Q 015851          217 E------FTDTKVQRAAAGALRTLAFKNDENKNQIVEC-----NALPT----LILMLRSE---DSAIHYEAVGVIGNLVH  278 (399)
Q Consensus       217 ~------~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~-----~~~~~----L~~ll~~~---~~~v~~~a~~~L~~l~~  278 (399)
                      .      ++++..+..|+.+++.++.+.... ......     ...+.    ++..+.++   ++-+|..|+|+++.++.
T Consensus       409 ~~~~~~~~~~w~~reaal~algaia~~~~~~-~~~~~~~~~~~~l~~~l~~~v~p~l~~~~~~~p~vr~~a~~~lg~~~~  487 (960)
T 1wa5_C          409 DQYMSDPSKNWKFKDLYIYLFTALAINGNIT-NAGVSSTNNLLNVVDFFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRN  487 (960)
T ss_dssp             HHHHC----CHHHHHHHHHHHHHHHBSSCCB-TTBCCCBCTTCCHHHHHHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGG
T ss_pred             HHhccCcchhHHHHHHHHHHHHHHHHHhccc-cCCcccccccccHHHHHHHHhHHHhcCCCCCCceehHHHHHHHHHHHh
Confidence            4      567889999999999998631100 000000     12222    23334555   88999999999999985


Q ss_pred             CChhHHHHHHHCCCcHHHHHhhcCCChHHHHHHHHHHHHhhccCh-------h-hHHHHHh--cCCHHHHHHhhCCCC--
Q 015851          279 SSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDS-------D-CKVHIVQ--RGAVRPLIEMLQSPD--  346 (399)
Q Consensus       279 ~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~-------~-~~~~l~~--~g~v~~L~~ll~~~~--  346 (399)
                      .-+.  .  .-..+++.++..|.++++.++..|+++|.+++....       + .+..+..  ..+++.|..++....  
T Consensus       488 ~~~~--~--~l~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~~~~~~~~~~~~~~~~l~p~l~~ll~~L~~ll~~~~~~  563 (960)
T 1wa5_C          488 QLTK--A--QLIELMPILATFLQTDEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNSTEILLKNLIALILKHGSS  563 (960)
T ss_dssp             GSCH--H--HHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTTTHHHHHHHHHHHHHTTCCC
T ss_pred             hCCH--H--HHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHhcccccccccccccHHHhhhhHHHHHHHHHHHHHhccCC
Confidence            4221  1  123457788888888889999999999999986311       1 1222211  234566666665531  


Q ss_pred             -HH--HHHHHHHHHHHhhccCCCCcch
Q 015851          347 -VQ--LREMSAFALGRLAQVITVSVLP  370 (399)
Q Consensus       347 -~~--v~~~a~~~L~~l~~~~~~~~~~  370 (399)
                       ..  ....+..+|..++....+.+.|
T Consensus       564 ~~~~~~~e~l~~al~~vv~~~~~~~~p  590 (960)
T 1wa5_C          564 PEKLAENEFLMRSIFRVLQTSEDSIQP  590 (960)
T ss_dssp             HHHHTSCHHHHHHHHHHHHHHTTTTGG
T ss_pred             CCcccccHHHHHHHHHHHHHHHHhhhh
Confidence             11  2345667777766655554443

>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}

Probab=97.32  E-value=0.0066  Score=52.08  Aligned_cols=141  Identities=10%  Similarity=0.066  Sum_probs=101.9

Q ss_pred             hcCCCHHHHHHHHHHHHHhhcCCh----hhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHHCC
Q 015851          216 LEFTDTKVQRAAAGALRTLAFKND----ENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAG  291 (399)
Q Consensus       216 l~~~~~~v~~~a~~~L~~L~~~~~----~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~  291 (399)
                      +.+.++.+...++.+|..+...-.    .....-. .-++|.|+.-+.+..+.+|..+-.++..+..-.+..       .
T Consensus        96 ~~d~N~~v~~~~L~~L~~l~~~l~~~~y~~~~~ea-~~~lP~LveKlGd~k~~vR~~~r~il~~l~~v~~~~-------~  167 (266)
T 2of3_A           96 FFETNPAALIKVLELCKVIVELIRDTETPMSQEEV-SAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDVVGPL-------K  167 (266)
T ss_dssp             TTSCCHHHHHHHHHHHHHHHHHHHHTTCCCCHHHH-HHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCHH-------H
T ss_pred             HhCCCHHHHHHHHHHHHHHHHHHHhccccchHHHH-HHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHCCHH-------H
Confidence            346788888888888877753110    1111111 236899999998889999998888887775321211       1


Q ss_pred             CcHHHHHhhcCCChHHHHHHHHHHHHhhccChhhHHHHHhcCCH---HHHHHhhCCCCHHHHHHHHHHHHHhhccCCCCc
Q 015851          292 ALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAV---RPLIEMLQSPDVQLREMSAFALGRLAQVITVSV  368 (399)
Q Consensus       292 ~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~v---~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~  368 (399)
                      +++.++.-+.+.+...+.+++..+..+...  .+..   ....+   +.+.+++.+.|..||.+|..++..+-...++++
T Consensus       168 v~~~l~~g~ksKN~R~R~e~l~~l~~li~~--~G~~---~~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y~~~Gd~v  242 (266)
T 2of3_A          168 MTPMLLDALKSKNARQRSECLLVIEYYITN--AGIS---PLKSLSVEKTVAPFVGDKDVNVRNAAINVLVACFKFEGDQM  242 (266)
T ss_dssp             HHHHHHHGGGCSCHHHHHHHHHHHHHHHHH--HCSG---GGGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHHHHHTTHH
T ss_pred             HHHHHHHHHccCCHHHHHHHHHHHHHHHHh--cCCC---ccccccchHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHH
Confidence            466778888899999999999988888643  1211   24468   999999999999999999999999998887753


Q ss_pred             c
Q 015851          369 L  369 (399)
Q Consensus       369 ~  369 (399)
                      .
T Consensus       243 ~  243 (266)
T 2of3_A          243 W  243 (266)
T ss_dssp             H
T ss_pred             H
Confidence            3

>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A

Probab=97.26  E-value=0.031  Score=57.93  Aligned_cols=216  Identities=13%  Similarity=0.079  Sum_probs=123.1

Q ss_pred             HHHHHHHHHHHHHhc-CChh-hHHHHHhcCcHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhhcCchhHHHHHhcC
Q 015851          130 HEVEKGSAFALGLLA-VKPE-HQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEG  207 (399)
Q Consensus       130 ~~~~~~a~~~L~~l~-~~~~-~~~~i~~~~~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~  207 (399)
                      ..++.+++.+|..+. ..++ ....+.  ..++..++.+.........   ..+...++..+..++. .+..+..+....
T Consensus       260 ~~vk~~~~~~l~~l~~~~~~~f~~~~~--~~~~~~~~~l~~~~~~~~~---~~~~~~al~fl~~~~~-~~~~~~~~~~~~  333 (960)
T 1wa5_C          260 IKVKSSIQELVQLYTTRYEDVFGPMIN--EFIQITWNLLTSISNQPKY---DILVSKSLSFLTAVTR-IPKYFEIFNNES  333 (960)
T ss_dssp             HHHHHHHHHHHHHHHHHCHHHHHHHHH--HHHHHHHHHHHHCCSCTTS---HHHHHHHHHHHHHHHT-SHHHHGGGCSHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHhcCCCcCc---HHHHHHHHHHHHHHhC-cHhHHHHHcCch
Confidence            357788888888887 4433 222211  2455566666532111111   1777888888888774 222221111011


Q ss_pred             ChHH-----HHHhhc----C-----CC--------------HHHHHHHHHHHHHhhcCChhhHHHHHhcCCHHHHHHhhc
Q 015851          208 GIPP-----LVELLE----F-----TD--------------TKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLR  259 (399)
Q Consensus       208 ~i~~-----L~~ll~----~-----~~--------------~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~L~~ll~  259 (399)
                      .++.     ++..+.    +     ++              ...|..|..+|..++...+   ..+... +++.+...+.
T Consensus       334 ~l~~li~~~i~~~m~~~~~d~e~w~~dp~e~i~~d~e~~d~~s~R~aa~~~L~~l~~~~~---~~v~~~-~l~~i~~~l~  409 (960)
T 1wa5_C          334 AMNNITEQIILPNVTLREEDVELFEDDPIEYIRRDLEGSDTDTRRRACTDFLKELKEKNE---VLVTNI-FLAHMKGFVD  409 (960)
T ss_dssp             HHHHHHHHTHHHHHSCCGGGTTTTTTCHHHHHHHHHHC----CHHHHHHHHHHHHHHHCH---HHHHHH-HHHHHHHHHH
T ss_pred             HHHHHHHHHhHHhcCCCHHHHHHHhcCHHHHHHhccCcccccCcHHHHHHHHHHHHHHcc---hhHHHH-HHHHHHHHHH
Confidence            2222     222221    0     11              2467788888888886433   222221 3344444454


Q ss_pred             ------CCCHHHHHHHHHHHHHhhcCChh------------HHHHHHHCCCcHHHHHhhcCC---ChHHHHHHHHHHHHh
Q 015851          260 ------SEDSAIHYEAVGVIGNLVHSSPN------------IKKEVLAAGALQPVIGLLSSC---CSESQREAALLLGQF  318 (399)
Q Consensus       260 ------~~~~~v~~~a~~~L~~l~~~~~~------------~~~~~~~~~~l~~L~~lL~~~---~~~v~~~a~~~L~~l  318 (399)
                            +++...+..|+.+++.++.+...            ....++    ...++..|.++   ++.+|..|+|+|+.+
T Consensus       410 ~~~~~~~~~w~~reaal~algaia~~~~~~~~~~~~~~~~~~l~~~l----~~~v~p~l~~~~~~~p~vr~~a~~~lg~~  485 (960)
T 1wa5_C          410 QYMSDPSKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFF----TKEIAPDLTSNNIPHIILRVDAIKYIYTF  485 (960)
T ss_dssp             HHHC----CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHHH----HHHTHHHHHCSSCSCHHHHHHHHHHHHHT
T ss_pred             HhccCcchhHHHHHHHHHHHHHHHHHhccccCCcccccccccHHHHH----HHHhHHHhcCCCCCCceehHHHHHHHHHH
Confidence                  45567889999999999753110            111111    12233445555   789999999999999


Q ss_pred             hccChhhHHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhcc
Q 015851          319 AATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQV  363 (399)
Q Consensus       319 ~~~~~~~~~~l~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~  363 (399)
                      +..-  ....  -..+++.+++.+.++++.|+..|+.+|.++++.
T Consensus       486 ~~~~--~~~~--l~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~  526 (960)
T 1wa5_C          486 RNQL--TKAQ--LIELMPILATFLQTDEYVVYTYAAITIEKILTI  526 (960)
T ss_dssp             GGGS--CHHH--HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTC
T ss_pred             HhhC--CHHH--HHHHHHHHHHHhCCCChhHHHHHHHHHHHHHhc
Confidence            8642  1222  223577888888888899999999999999974

>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}

Probab=97.25  E-value=0.015  Score=50.64  Aligned_cols=181  Identities=13%  Similarity=0.044  Sum_probs=117.1

Q ss_pred             HHHHHHHHHHHHHHhhcCchhH--HHHH--hcCChHHHHHhhcCCCHHHHHHHHHHHHHhhcCChh-----hHHHHHhcC
Q 015851          179 NSVIRRAADAITNLAHENSSIK--TRVR--MEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDE-----NKNQIVECN  249 (399)
Q Consensus       179 ~~~~~~a~~~L~~l~~~~~~~~--~~~~--~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~-----~~~~~~~~~  249 (399)
                      |..+..++..|..+....+...  ....  -....+.+-..+.+.|..++..++.++..++.....     ......-..
T Consensus        23 WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~  102 (278)
T 4ffb_C           23 WKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNSLIDAFASSSLKNAHNITLIST  102 (278)
T ss_dssp             HHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC---CCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhcccchhHHHHHH
Confidence            4788888888877775433211  1111  113456667788899999999999999988753211     111112234


Q ss_pred             CHHHHHH-hhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHHCCCcHHHHHhhcCCChHHHHHHHHHHHHhhcc-Chh--h
Q 015851          250 ALPTLIL-MLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAAT-DSD--C  325 (399)
Q Consensus       250 ~~~~L~~-ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~-~~~--~  325 (399)
                      ++|.|+. .+.+..+.++..+..++..++...... ..     +++.+...+.+.++.++.+++..|..+... +..  .
T Consensus       103 ~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~-~~-----~~e~l~~~l~~Knpkv~~~~l~~l~~~l~~fg~~~~~  176 (278)
T 4ffb_C          103 WTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTSI-TQ-----SVELVIPFFEKKLPKLIAAAANCVYELMAAFGLTNVN  176 (278)
T ss_dssp             HHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSSS-HH-----HHHHHGGGGGCSCHHHHHHHHHHHHHHHHHHTTTTCC
T ss_pred             HHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCcH-HH-----HHHHHHHHHhccCHHHHHHHHHHHHHHHHHhCCCcCC
Confidence            6777774 577888999999998888776432111 11     256677788899999999999888887642 111  1


Q ss_pred             HHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhccCCC
Q 015851          326 KVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQVITV  366 (399)
Q Consensus       326 ~~~l~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~  366 (399)
                      ....+ ..+++.+..++.+.++.||..|..++..+...-++
T Consensus       177 ~k~~l-~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~~~G~  216 (278)
T 4ffb_C          177 VQTFL-PELLKHVPQLAGHGDRNVRSQTMNLIVEIYKVTGN  216 (278)
T ss_dssp             HHHHH-HHHGGGHHHHHTCSSHHHHHHHHHHHHHHHTC---
T ss_pred             chhHH-HHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCc
Confidence            11111 12456788889999999999999999999876553

>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*

Probab=97.23  E-value=0.048  Score=47.91  Aligned_cols=204  Identities=13%  Similarity=0.094  Sum_probs=148.2

Q ss_pred             HHHHhcCcHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhhcCchhH----HHHHh-cCChHHHHHhhcCCCHHHHH
Q 015851          151 QLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIK----TRVRM-EGGIPPLVELLEFTDTKVQR  225 (399)
Q Consensus       151 ~~i~~~~~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~----~~~~~-~~~i~~L~~ll~~~~~~v~~  225 (399)
                      +.+...+.+..|+..|..-+-        +.+..+..+..++.......+    ..+.. ...+..|+.--  +++++.-
T Consensus        72 ~ei~~~dll~~Li~~l~~L~f--------E~RKd~~~if~~llr~~~~~~~p~v~Yl~~~peil~~L~~gY--e~~diAl  141 (341)
T 1upk_A           72 QELYNSGLLSTLVADLQLIDF--------EGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGY--ESPEIAL  141 (341)
T ss_dssp             HHHHHHSHHHHHHHTGGGSCH--------HHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGG--GSTTTHH
T ss_pred             HHHHHhCHHHHHHHhcccCCc--------hhhccHHHHHHHHHhcccCCCCchhHHHHcCHHHHHHHHHhh--ccchhHh
Confidence            345566788888888887765        888889999999886543322    12221 12222233222  2355555


Q ss_pred             HHHHHHHHhhcCChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHHCC---CcHHHHHhhcC
Q 015851          226 AAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAG---ALQPVIGLLSS  302 (399)
Q Consensus       226 ~a~~~L~~L~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~---~l~~L~~lL~~  302 (399)
                      .+-..|+.... ++.....+...+.+-.+...++.++-++...|..++..+-..........+..+   ++...-.+|.+
T Consensus       142 ~~G~mLRecir-~e~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll~S  220 (341)
T 1upk_A          142 NCGIMLRECIR-HEPLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHS  220 (341)
T ss_dssp             HHHHHHHHHHT-SHHHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHH-hHHHHHHHhccHHHHHHHHHhcCCCchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHhcC
Confidence            66666777776 678888888877788888899999999999999999988765555555555543   56777788999


Q ss_pred             CChHHHHHHHHHHHHhhccChhhH----HHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhccCCC
Q 015851          303 CCSESQREAALLLGQFAATDSDCK----VHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQVITV  366 (399)
Q Consensus       303 ~~~~v~~~a~~~L~~l~~~~~~~~----~~l~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~  366 (399)
                      ++.-++..++..|+.+... ..+.    +.+.+..-+..+..+|++++..++-.|-.+...+..++..
T Consensus       221 ~NYVTkRQSlKLLgelLld-r~N~~vM~~Yis~~~nLkl~M~LL~d~sk~Iq~EAFhVFKvFVANP~K  287 (341)
T 1upk_A          221 ENYVTKRQSLKLLGELLLD-RHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVANPNK  287 (341)
T ss_dssp             SSHHHHHHHHHHHHHHHHS-GGGHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHCSSC
T ss_pred             CcchhHHHHHHHHHHHHhC-chHHHHHHHHhCCHHHHHHHHHHhcCchhchhhhhhhheeeeeeCCCC
Confidence            9999999999999999853 4332    3333456688999999999999999999999999876554

>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B

Probab=97.19  E-value=0.044  Score=56.75  Aligned_cols=221  Identities=13%  Similarity=0.103  Sum_probs=127.7

Q ss_pred             HHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhhcCchhHHHHHhcCCh
Q 015851          130 HEVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGI  209 (399)
Q Consensus       130 ~~~~~~a~~~L~~l~~~~~~~~~i~~~~~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i  209 (399)
                      +..++.++++++.++......    ....++.++..+..-..+.     ..++..++++++.++..-.....  .-..++
T Consensus       463 w~~~eaal~al~~i~~~~~~~----~~~~l~~l~~~l~~l~~~~-----~~vr~~~~~~l~~~~~~l~~~~~--~l~~vl  531 (963)
T 2x19_B          463 WQHTEALLYGFQSIAETIDVN----YSDVVPGLIGLIPRISISN-----VQLADTVMFTIGALSEWLADHPV--MINSVL  531 (963)
T ss_dssp             HHHHHHHHHHHHHHTTSCCSS----CCSHHHHHHHHGGGSCCCS-----HHHHHHHHHHHHHTHHHHHHCHH--HHTTTH
T ss_pred             hHHHHHHHHHHHHHHhhcCch----hhHHHHHHHHHHHhCCCCc-----HHHHHHHHHHHHHHHHHHHhCHH--HHHHHH
Confidence            467889999999999432210    1234555665553322111     17889999999999853221111  235788


Q ss_pred             HHHHHhhcCCCHHHHHHHHHHHHHhhcCChhhHHHHHh--cCCHHHHHHhhcC--CCHHHHHHHHHHHHHhhcCCh-hHH
Q 015851          210 PPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVE--CNALPTLILMLRS--EDSAIHYEAVGVIGNLVHSSP-NIK  284 (399)
Q Consensus       210 ~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~--~~~~~~L~~ll~~--~~~~v~~~a~~~L~~l~~~~~-~~~  284 (399)
                      +.++..|.+  +.++..|+.+|.+++.....   .+..  ..++..+..++..  -+...+..+..+++.++...+ +..
T Consensus       532 ~~l~~~l~~--~~V~~~A~~al~~l~~~~~~---~l~p~~~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~~~~~~~~  606 (963)
T 2x19_B          532 PLVLHALGN--PELSVSSVSTLKKICRECKY---DLPPYAANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSALQVEEI  606 (963)
T ss_dssp             HHHHHHTTC--GGGHHHHHHHHHHHHHHTGG---GCTTTHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTSCHHHH
T ss_pred             HHHHHHhCC--chHHHHHHHHHHHHHHHHHH---HHHhhHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhcCCHHHH
Confidence            888888865  88999999999999963222   1211  1234444555554  256888889999999875433 222


Q ss_pred             HHHHHCCCcHHHHHhhc----C-CChHHHHH---HHHHHHHhhcc-C---h------------------hhHHHHHhcCC
Q 015851          285 KEVLAAGALQPVIGLLS----S-CCSESQRE---AALLLGQFAAT-D---S------------------DCKVHIVQRGA  334 (399)
Q Consensus       285 ~~~~~~~~l~~L~~lL~----~-~~~~v~~~---a~~~L~~l~~~-~---~------------------~~~~~l~~~g~  334 (399)
                      ... -..+++.+...+.    . .+++.+..   ...+|+.+... .   +                  ..... ....+
T Consensus       607 ~~~-~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~  684 (963)
T 2x19_B          607 LKN-LHSLISPYIQQLEKLAEEIPNPSNKLAIVHILGLLSNLFTTLDISHHEDDHEGPELRKLPVPQGPNPVVV-VLQQV  684 (963)
T ss_dssp             HHH-HHHHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHHHHHCCSSCCC---------------CCCHHHH-HHHHH
T ss_pred             HHH-HHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHcCCCcccccccccccccCCCCCCCCchHH-HHHHH
Confidence            222 2334444444432    2 24444443   33344333321 0   0                  00111 22335


Q ss_pred             HHHHHHhhC--CCCHHHHHHHHHHHHHhhccCCCCc
Q 015851          335 VRPLIEMLQ--SPDVQLREMSAFALGRLAQVITVSV  368 (399)
Q Consensus       335 v~~L~~ll~--~~~~~v~~~a~~~L~~l~~~~~~~~  368 (399)
                      ++.+..++.  ..+..+.+.++.++..++...+..+
T Consensus       685 ~~~~~~~l~~~~~~~~v~e~~~~~l~~~~~~~~~~~  720 (963)
T 2x19_B          685 FQLIQKVLSKWLNDAQVVEAVCAIFEKSVKTLLDDF  720 (963)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSSTT
T ss_pred             HHHHHHHHHhccCchHHHHHHHHHHHHHHHhhcccc
Confidence            666666663  3578899999999999887666543

>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}

Probab=97.08  E-value=0.026  Score=58.48  Aligned_cols=221  Identities=10%  Similarity=0.048  Sum_probs=122.4

Q ss_pred             HHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhhcCchhHHHHHhcCChH
Q 015851          131 EVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIP  210 (399)
Q Consensus       131 ~~~~~a~~~L~~l~~~~~~~~~i~~~~~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~  210 (399)
                      .-++.++.+++.++.......    ...++.++.++..-....   ....++..++++++.++..-.....  .-..+++
T Consensus       479 ~~~eaal~~l~~iae~~~~~~----~~~l~~l~~~l~~l~~~d---~~~~vr~~a~~~l~~~~~~l~~~~~--~l~~vl~  549 (971)
T 2x1g_F          479 TKLEACIYSFQSVAEHFGGEE----KRQIPRLMRVLAEIPYEK---LNVKLLGTALETMGSYCNWLMENPA--YIPPAIN  549 (971)
T ss_dssp             HHHHHHHHHHHHTTTC----------CHHHHHHHHHHHSCTTT---SCHHHHHHHHHHHHHTHHHHC------CHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhcChhh----hHHHHHHHHHHHhcCccc---cCHHHHHHHHHHHHHHHHHHhcCHH--HHHHHHH
Confidence            678899999999984432211    234555555543222100   0017899999999999853221111  1123456


Q ss_pred             HHHHhhcCCCHHHHHHHHHHHHHhhcCChhhHHHHHhcCCHHHHHHhhcC--CCHHHHHHHHHHHHHhhcCCh-hHHHHH
Q 015851          211 PLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRS--EDSAIHYEAVGVIGNLVHSSP-NIKKEV  287 (399)
Q Consensus       211 ~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~L~~ll~~--~~~~v~~~a~~~L~~l~~~~~-~~~~~~  287 (399)
                      .++..| +  +.++..|++++.+++........... ..++..+..++..  -+...+..+..+++.++...+ ......
T Consensus       550 ~l~~~l-~--~~v~~~A~~al~~l~~~~~~~l~p~~-~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~~~~~~~~~~  625 (971)
T 2x1g_F          550 LLVRGL-N--SSMSAQATLGLKELCRDCQLQLKPYA-DPLLNACHASLNTGRMKNSDSVRLMFSIGKLMSLLRPEEIPKY  625 (971)
T ss_dssp             HHHHHH-H--SSCHHHHHHHHHHHHHHCHHHHHHHH-HHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHTSCTTHHHHH
T ss_pred             HHHHHh-C--hHHHHHHHHHHHHHHHHHHHhccccH-HHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence            677667 3  77999999999999964332221122 2355666677776  357888889999999875322 222221


Q ss_pred             HHCCCcHHHHHh----hcCC--ChHHHHHHHHHHHHhhcc----Ch------------hhHHHHHhcCCHHHHHHhhC--
Q 015851          288 LAAGALQPVIGL----LSSC--CSESQREAALLLGQFAAT----DS------------DCKVHIVQRGAVRPLIEMLQ--  343 (399)
Q Consensus       288 ~~~~~l~~L~~l----L~~~--~~~v~~~a~~~L~~l~~~----~~------------~~~~~l~~~g~v~~L~~ll~--  343 (399)
                      + ...+++++..    ++..  +.+.+.....++..++..    .+            +.... ....+++.+..++.  
T Consensus       626 ~-~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~i~~~l~~~l~~~  703 (971)
T 2x1g_F          626 L-DIIVSPCFEELQAICQADSKTPAARIRTIFRLNMISTLFSSLNTDVDEQATDQPIVQPVLL-VMQRTMPIFKRIAEMW  703 (971)
T ss_dssp             H-HHHHHHHHHHHHHHHTC---CHHHHHHHHHHHHHHHHHHHHHTC-------------CCHH-HHHTTHHHHHHHHHHT
T ss_pred             H-HHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHhhcCCCcCcccccccCCCchHH-HHHHHHHHHHHHHHhc
Confidence            1 2234444433    3332  333334444444443311    00            00011 12456777777774  


Q ss_pred             CCCHHHHHHHHHHHHHhhccCCC
Q 015851          344 SPDVQLREMSAFALGRLAQVITV  366 (399)
Q Consensus       344 ~~~~~v~~~a~~~L~~l~~~~~~  366 (399)
                      ..+..+.+.++.+++.++..-..
T Consensus       704 ~~~~~v~e~~~~~~~~~~~~~~~  726 (971)
T 2x1g_F          704 VEEIDVLEAACSAMKHAITNLRS  726 (971)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHHHC
T ss_pred             cccHHHHHHHHHHHHHHHHhhhh
Confidence            24789999999999998765443

>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*

Probab=97.05  E-value=0.083  Score=46.43  Aligned_cols=242  Identities=13%  Similarity=0.150  Sum_probs=162.8

Q ss_pred             HHHHhCCChHHHHhcccCCCCcccccCCCcchHHHHHHHHHHHHHhc-CChh----hHHHHHhcCcHHHHHHHHhccccC
Q 015851           98 NWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA-VKPE----HQQLIVDNGALSHLVNLLKRHMDS  172 (399)
Q Consensus        98 ~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~~~~~a~~~L~~l~-~~~~----~~~~i~~~~~i~~L~~~L~~~~~~  172 (399)
                      ..+...+.+..|+..|..-+-            +.|..+..++.++. ....    ..+.+..  - +.++..|-.+.+.
T Consensus        72 ~ei~~~dll~~Li~~l~~L~f------------E~RKd~~~if~~llr~~~~~~~p~v~Yl~~--~-peil~~L~~gYe~  136 (341)
T 1upk_A           72 QELYNSGLLSTLVADLQLIDF------------EGKKDVAQIFNNILRRQIGTRTPTVEYICT--Q-QNILFMLLKGYES  136 (341)
T ss_dssp             HHHHHHSHHHHHHHTGGGSCH------------HHHHHHHHHHHHHHTCCBTTBCHHHHHHHT--C-THHHHHHHHGGGS
T ss_pred             HHHHHhCHHHHHHHhcccCCc------------hhhccHHHHHHHHHhcccCCCCchhHHHHc--C-HHHHHHHHHhhcc
Confidence            455667888888888876544            88889999999988 3332    2334443  1 4444444444433


Q ss_pred             ccccccHHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhhHHHHHhc---C
Q 015851          173 NCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVEC---N  249 (399)
Q Consensus       173 ~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~---~  249 (399)
                      .      ++...+-..|..+. ..+.....+...+.+-.+.+.+..++-++...|..++..|...+......++..   .
T Consensus       137 ~------diAl~~G~mLReci-r~e~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~  209 (341)
T 1upk_A          137 P------EIALNCGIMLRECI-RHEPLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDR  209 (341)
T ss_dssp             T------TTHHHHHHHHHHHH-TSHHHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHH
T ss_pred             c------hhHhHHHHHHHHHH-HhHHHHHHHhccHHHHHHHHHhcCCCchHHHHHHHHHHHHHhccHHHHHHHHHHhHHH
Confidence            2      45555556666666 455555556677778888899999999999999999999988777777777663   3


Q ss_pred             CHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHH----HHCCCcHHHHHhhcCCChHHHHHHHHHHHHhhccC---
Q 015851          250 ALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEV----LAAGALQPVIGLLSSCCSESQREAALLLGQFAATD---  322 (399)
Q Consensus       250 ~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~----~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~---  322 (399)
                      ++..+-++|.+++--++..++..|+.+... ..+...+    -+..-+..++.+|++.+..++-+|..+.--+.+..   
T Consensus       210 Ff~~y~~Ll~S~NYVTkRQSlKLLgelLld-r~N~~vM~~Yis~~~nLkl~M~LL~d~sk~Iq~EAFhVFKvFVANP~K~  288 (341)
T 1upk_A          210 FFSEYEKLLHSENYVTKRQSLKLLGELLLD-RHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVANPNKT  288 (341)
T ss_dssp             HHHHHHHHTTCSSHHHHHHHHHHHHHHHHS-GGGHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHCSSCC
T ss_pred             HHHHHHHHhcCCcchhHHHHHHHHHHHHhC-chHHHHHHHHhCCHHHHHHHHHHhcCchhchhhhhhhheeeeeeCCCCC
Confidence            577788899999999999999999999854 3332222    23356888999999999999999998888777642   


Q ss_pred             hhhHHHHHh--cCCHHHHHHhhCC--CCHHHHHHHHHHHHHhhc
Q 015851          323 SDCKVHIVQ--RGAVRPLIEMLQS--PDVQLREMSAFALGRLAQ  362 (399)
Q Consensus       323 ~~~~~~l~~--~g~v~~L~~ll~~--~~~~v~~~a~~~L~~l~~  362 (399)
                      +.....+..  ..++..|-++..+  .|..-...=...+..|..
T Consensus       289 ~~I~~IL~~Nr~kLl~fl~~f~~d~~eDeqF~dEK~~lI~~I~~  332 (341)
T 1upk_A          289 QPILDILLKNQAKLIEFLSKFQNDRTEDEQFNDEKTYLVKQIRD  332 (341)
T ss_dssp             HHHHHHHHHTHHHHHHHHHHTTTTC-CCSHHHHHHHHHHHHHHT
T ss_pred             hHHHHHHHHHHHHHHHHHHhCCCCCcchhhHHHHHHHHHHHHHh
Confidence            233344443  2333444444433  345555554444444443

>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}

Probab=96.94  E-value=0.032  Score=57.82  Aligned_cols=260  Identities=8%  Similarity=0.010  Sum_probs=133.5

Q ss_pred             hhHHHHHHHHHHHHHHcCChh--HHHHHHhCCChHHHHhcc-------cCCCCcccccCCCcchHHHHHHHHHHHHHhc-
Q 015851           75 ADRAAAKRATHVLAELAKNEE--VVNWIVEGGAVPALVKHL-------QAPPTSEADRNLKPFEHEVEKGSAFALGLLA-  144 (399)
Q Consensus        75 ~~~~~~~~a~~~L~~l~~~~~--~~~~~~~~g~l~~L~~lL-------~~~~~~~~~~~~~~~~~~~~~~a~~~L~~l~-  144 (399)
                      .++..+..|+.+|..+...+.  .+...+. ..++.++.+.       .+.+..         ..+.....++.+..++ 
T Consensus       256 ~~~~~~~~a~~~l~~i~~~~~~~~~~~~~~-~l~~~~~~~~~~~~~~~~~~d~~---------~~~~~~~l~~l~~~~~~  325 (971)
T 2x1g_F          256 DENELAESCLKTMVNIIIQPDCHNYPKTAF-VLIKMFLDSLSEITKTEWKREND---------NEDIIVHIYMLFVSSVE  325 (971)
T ss_dssp             HHHHHHHHHHHHHHHHHHCSGGGGCHHHHH-HHHHHHHHHHHHHHHHHSSSSCS---------CSHHHHHHHHHHHHHHH
T ss_pred             CCcHHHHHHHHHHHHHHcCccccccHHHHH-HHHHHHHHhHHHHHHHHhccccc---------chHHHHHHHHHHHHHHH
Confidence            466789999999999987422  1111111 1233333321       221210         0145556677776666 


Q ss_pred             CChhh-H-----------HHHHhcCcHHHHHHHHhc----cccCccccccHHHHHHHHHHHHHHhhc---------Cchh
Q 015851          145 VKPEH-Q-----------QLIVDNGALSHLVNLLKR----HMDSNCSRAVNSVIRRAADAITNLAHE---------NSSI  199 (399)
Q Consensus       145 ~~~~~-~-----------~~i~~~~~i~~L~~~L~~----~~~~~~~~~~~~~~~~a~~~L~~l~~~---------~~~~  199 (399)
                      ..+.. .           ..+.  ..++.++.+...    ..++       ++...+++.+..++..         .+..
T Consensus       326 ~~~~~~~~~~~~~~~~~~~~l~--~~l~~ll~~~~~~~~~~~~~-------~v~~~~l~fw~~l~~~~~~~~~~~~~~~~  396 (971)
T 2x1g_F          326 RHSTLLLSGITSADPELSILVH--RIVQEILHCTDKPGIYPVEE-------SCSTMALAFWYMLQDEVFAMSNDEQKHKC  396 (971)
T ss_dssp             HTHHHHHHHHHTCCHHHHHHHH--HHHHHHHHHHHCSSCTTTTC-------TTHHHHHHHHHHHHHHHHC-------CHH
T ss_pred             HHHHHHHHHhccCcccccHHHH--HHHHHHHHHHcCCCCCCcch-------hhhHHHHHHHHHHHHHHHhcccccchHHH
Confidence            22221 1           1111  244555554433    1121       6778888888777641         1111


Q ss_pred             HHHHH--hcCChHHHHHhhcCC--------C-------HHHHHHHHHHHHHhhcCChhhHHHHHhcCCHHHHHHhhcC--
Q 015851          200 KTRVR--MEGGIPPLVELLEFT--------D-------TKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRS--  260 (399)
Q Consensus       200 ~~~~~--~~~~i~~L~~ll~~~--------~-------~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~L~~ll~~--  260 (399)
                      ...+.  -...++.++..+..+        +       ...|..+..+|..++...++   .+... +++.+-..+..  
T Consensus       397 ~~~~~~~~~~ll~~l~~~~~~p~~~~~~~~d~~e~~~f~~~R~~~~~~l~~~~~~~~~---~~l~~-~~~~l~~~l~~~~  472 (971)
T 2x1g_F          397 WEYIKPLYAHLTRILVRKSEQPDEKSLAKWSSDDLECFRCYRQDISDTFMYCYDVLND---YILEI-LAAMLDEAIADLQ  472 (971)
T ss_dssp             HHHHHHHHHHHHHHHHHHTSCCCTTTTSCSCHHHHHHHHHHHHHHHHHHHHHHTTCTT---HHHHH-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCCcccccccCHhHHHHHHHHHHHHHHHHHHHHHHHhH---HHHHH-HHHHHHHHHHhcc
Confidence            11111  113445555555322        1       13566677777777653221   11111 12222233322  


Q ss_pred             ---CCHHHHHHHHHHHHHhhcCChhHHHHHHHCCCcHHHHHhh---c--CCChHHHHHHHHHHHHhhccChhhHHHHHhc
Q 015851          261 ---EDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLL---S--SCCSESQREAALLLGQFAATDSDCKVHIVQR  332 (399)
Q Consensus       261 ---~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL---~--~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~  332 (399)
                         .+...++.++.+++.++.+.....     ...++.++.++   .  ..++.++..++++++.++..-....+.+  .
T Consensus       473 ~~~~~w~~~eaal~~l~~iae~~~~~~-----~~~l~~l~~~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~~~~l--~  545 (971)
T 2x1g_F          473 RHPTHWTKLEACIYSFQSVAEHFGGEE-----KRQIPRLMRVLAEIPYEKLNVKLLGTALETMGSYCNWLMENPAYI--P  545 (971)
T ss_dssp             HCTTCCHHHHHHHHHHHHTTTC-----------CHHHHHHHHHHHSCTTTSCHHHHHHHHHHHHHTHHHHC----CH--H
T ss_pred             CCCCcHHHHHHHHHHHHHHHhhcChhh-----hHHHHHHHHHHHhcCccccCHHHHHHHHHHHHHHHHHHhcCHHHH--H
Confidence               455789999999999986533221     12344444433   3  2478999999999999885311211111  1


Q ss_pred             CCHHHHHHhhCCCCHHHHHHHHHHHHHhhccCCCC
Q 015851          333 GAVRPLIEMLQSPDVQLREMSAFALGRLAQVITVS  367 (399)
Q Consensus       333 g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~  367 (399)
                      .+++.|+..+ +  +.++..|+.++.++++.....
T Consensus       546 ~vl~~l~~~l-~--~~v~~~A~~al~~l~~~~~~~  577 (971)
T 2x1g_F          546 PAINLLVRGL-N--SSMSAQATLGLKELCRDCQLQ  577 (971)
T ss_dssp             HHHHHHHHHH-H--SSCHHHHHHHHHHHHHHCHHH
T ss_pred             HHHHHHHHHh-C--hHHHHHHHHHHHHHHHHHHHh
Confidence            2456666666 2  779999999999999876543

>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B

Probab=96.85  E-value=0.092  Score=54.31  Aligned_cols=102  Identities=10%  Similarity=0.079  Sum_probs=70.4

Q ss_pred             cCCCHHHHHHHHHHHHHhhcCChhHHHHHHHCCCcHHHHHhh---cCCChHHHHHHHHHHHHhhccChhhHHHHHhcCCH
Q 015851          259 RSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLL---SSCCSESQREAALLLGQFAATDSDCKVHIVQRGAV  335 (399)
Q Consensus       259 ~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL---~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~v  335 (399)
                      .+.+...++.++++++.++.+.....     ...++.++..+   ..+++.++..++++++.++..-.... .+. ..++
T Consensus       459 ~~~~w~~~eaal~al~~i~~~~~~~~-----~~~l~~l~~~l~~l~~~~~~vr~~~~~~l~~~~~~l~~~~-~~l-~~vl  531 (963)
T 2x19_B          459 EPYSWQHTEALLYGFQSIAETIDVNY-----SDVVPGLIGLIPRISISNVQLADTVMFTIGALSEWLADHP-VMI-NSVL  531 (963)
T ss_dssp             CSCCHHHHHHHHHHHHHHTTSCCSSC-----CSHHHHHHHHGGGSCCCSHHHHHHHHHHHHHTHHHHHHCH-HHH-TTTH
T ss_pred             CCCchHHHHHHHHHHHHHHhhcCchh-----hHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHhCH-HHH-HHHH
Confidence            45577889999999999986533211     12344444443   33577899999999999985322222 222 3578


Q ss_pred             HHHHHhhCCCCHHHHHHHHHHHHHhhccCCCCcc
Q 015851          336 RPLIEMLQSPDVQLREMSAFALGRLAQVITVSVL  369 (399)
Q Consensus       336 ~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~  369 (399)
                      +.++..+++  +.|+..|+.++.++++.....+.
T Consensus       532 ~~l~~~l~~--~~V~~~A~~al~~l~~~~~~~l~  563 (963)
T 2x19_B          532 PLVLHALGN--PELSVSSVSTLKKICRECKYDLP  563 (963)
T ss_dssp             HHHHHHTTC--GGGHHHHHHHHHHHHHHTGGGCT
T ss_pred             HHHHHHhCC--chHHHHHHHHHHHHHHHHHHHHH
Confidence            888888854  88999999999999987665433

>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*

Probab=96.71  E-value=0.084  Score=54.58  Aligned_cols=280  Identities=12%  Similarity=0.096  Sum_probs=148.8

Q ss_pred             hhHHHHHHHHHHHHHHcCChhHHHHHHhCCChHHHHhcccCCCCcccccCCCcchHHHHHHHHHHHHHhc---CChhhHH
Q 015851           75 ADRAAAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA---VKPEHQQ  151 (399)
Q Consensus        75 ~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~~~~~a~~~L~~l~---~~~~~~~  151 (399)
                      .++.++..++.+|......-.. ..++..+.++.+.++|.+  +            +++..|+.+|..+.   .+++.+.
T Consensus       205 ~~~~l~~~~L~~l~s~i~wi~~-~~i~~~~ll~~l~~~L~~--~------------~~r~~A~ecL~ei~~k~~~~~~k~  269 (980)
T 3ibv_A          205 KNYGTVGLCLQVYAQWVSWINI-NLIVNEPCMNLLYSFLQI--E------------ELRCAACETMTEIVNKKMKPLEKL  269 (980)
T ss_dssp             TCHHHHHHHHHHHHHHTTTSCH-HHHHCHHHHHHHHHHTTS--H------------HHHHHHHHHHHHHHHSCCCHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHhhcCH-HhhhcchHHHHHHHHcCC--h------------HHHHHHHHHHHHHHHcCCChhhHH
Confidence            4567888999999998884221 344566788888888874  2            78999999999988   3344444


Q ss_pred             HHHhcCcHHHHHHHHhc-cccCccccccHHHHHHHHHHHHHHhh------cCc-----hhHHH--HHhcCChHHHHHhhc
Q 015851          152 LIVDNGALSHLVNLLKR-HMDSNCSRAVNSVIRRAADAITNLAH------ENS-----SIKTR--VRMEGGIPPLVELLE  217 (399)
Q Consensus       152 ~i~~~~~i~~L~~~L~~-~~~~~~~~~~~~~~~~a~~~L~~l~~------~~~-----~~~~~--~~~~~~i~~L~~ll~  217 (399)
                      .++..=.+...+..+.. ..+.       ++.+..+..+..++.      ..+     ..+..  -.-.+.++.++.++.
T Consensus       270 ~li~~l~L~~~~~~l~~~~~D~-------d~~~~la~L~~~~ge~l~~~~~~~~~~~~~~~~~~~~~l~~ll~~lL~~~~  342 (980)
T 3ibv_A          270 NLLNILNLNLFFSKSQEQSTDP-------NFDEHVAKLINAQGVELVAIKSDPSELSPELKENCSFQLYNLFPYLIRYLS  342 (980)
T ss_dssp             HHHHHHHHHHHHCC-----CCH-------HHHHHHHHHHHHHHHHHHHHHTSCC--CHHHHHHHHHHHHHTHHHHHHHHT
T ss_pred             HHHHHHhHHHHHHHHhcccccH-------HHHHHHHHHHHHHHHHHHHHccCccccchhhhhhHHHHHHHHHHHHHHHhC
Confidence            33332111222222221 1111       555444444433321      121     11111  112367899999999


Q ss_pred             CCCHHHHHHHHHHHHHhhcCCh---------hhHHHHHhcCCHHHHHHhhcCC------C----------HHHHHHHHHH
Q 015851          218 FTDTKVQRAAAGALRTLAFKND---------ENKNQIVECNALPTLILMLRSE------D----------SAIHYEAVGV  272 (399)
Q Consensus       218 ~~~~~v~~~a~~~L~~L~~~~~---------~~~~~~~~~~~~~~L~~ll~~~------~----------~~v~~~a~~~  272 (399)
                      +++.++...++..+..+.....         .....+.. ..++.++.-+..+      +          .+.|......
T Consensus       343 ~~~deVs~~t~~Fw~~~l~~~~~~~~~~~~~~~~~~~l~-~Ll~~li~k~~yp~d~~~~~~~d~ed~~~F~e~Rk~l~~l  421 (980)
T 3ibv_A          343 DDYDETSTAVFPFLSDLLVSLRKESSSKELSASLKEFLK-SLLEAIIKKMKYDESQEWDDDPDSEEEAEFQEMRKKLKIF  421 (980)
T ss_dssp             CSSHHHHHTTHHHHHHHHHHHHHHTTSCCCCHHHHHHHH-HHHHHHHHTTSCCTTCCCCCCSSSSTHHHHHHHHHHHHHH
T ss_pred             CCchhHHHHHHHHHHHHHHHHHhccccccccHHHHHHHH-HHHHHHHHHccCCCccccccccchhHHHHHHHHHHHHHHH
Confidence            9988888777777666553110         11111111 1344444444321      1          1455555533


Q ss_pred             HHHhhcCChhHHHHHHHCCCcHHHHHhhc---CCChHHHHHHHHHHHHhhccChhhHHHHH-h----cCCHHHHHHhhC-
Q 015851          273 IGNLVHSSPNIKKEVLAAGALQPVIGLLS---SCCSESQREAALLLGQFAATDSDCKVHIV-Q----RGAVRPLIEMLQ-  343 (399)
Q Consensus       273 L~~l~~~~~~~~~~~~~~~~l~~L~~lL~---~~~~~v~~~a~~~L~~l~~~~~~~~~~l~-~----~g~v~~L~~ll~-  343 (399)
                      +..++.-.+...-...-.-+.+.+.+.+.   +.++...+.++.+|+.++++-........ .    ..+++.+..++. 
T Consensus       422 ~d~~~~l~~~~~l~~~~~~i~~~l~~~l~~~~~~~W~~~EaaL~~l~~iaE~i~~~~~~~~~~~~~lp~l~~ll~~ll~s  501 (980)
T 3ibv_A          422 QDTINSIDSSLFSSYMYSAITSSLSTAATLSPENSWQLIEFALYETYIFGEGLRGPDAFFNEVDKSPTVLSQILALVTTS  501 (980)
T ss_dssp             HHHHHHHCHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTTTTCCSGGGTBCSSSCCBCHHHHHHHHHHHS
T ss_pred             HHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHhhccccccccCcccchhHHHHHHHHHHHhC
Confidence            33333222222111000011122223332   34568889999999999875332111110 0    123455666654 


Q ss_pred             ----CCCHHHHHHHHHHHHHhhccCC--CCcchhHHHHHh
Q 015851          344 ----SPDVQLREMSAFALGRLAQVIT--VSVLPAILIFII  377 (399)
Q Consensus       344 ----~~~~~v~~~a~~~L~~l~~~~~--~~~~~~~~~~~~  377 (399)
                          .+++.|+..++++++..+..-.  ..+++.++..+.
T Consensus       502 ~i~~~~hp~V~~~~~~~l~rys~~~~~~~~~l~~~L~~ll  541 (980)
T 3ibv_A          502 QVCRHPHPLVQLLYMEILVRYASFFDYESAAIPALIEYFV  541 (980)
T ss_dssp             STTTCCCHHHHHHHHHHHHHTGGGGGTCCTTHHHHHHHHT
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHh
Confidence                6789999999999999998654  346676666543

>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}

Probab=96.53  E-value=0.09  Score=46.17  Aligned_cols=161  Identities=11%  Similarity=0.044  Sum_probs=93.1

Q ss_pred             HHHHHHHHhcCChhhHHHHHhcCcHHHHHHHH-hccccCccccccHHHHHHHHHHHHHHhhcCchhHHHHHhc--CChHH
Q 015851          135 GSAFALGLLAVKPEHQQLIVDNGALSHLVNLL-KRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRME--GGIPP  211 (399)
Q Consensus       135 ~a~~~L~~l~~~~~~~~~i~~~~~i~~L~~~L-~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~--~~i~~  211 (399)
                      -++-.|.-+..+|.....+.+.+.-..++..+ ....+... .   ..+..+++++.|+.. ++..+..+...  .+++.
T Consensus       121 PvLDLlRl~~l~p~~~~~~~~~~~~~~l~~~l~~~~~~~~~-p---~n~ml~lR~l~NlF~-~~~g~~~l~~~~~~il~~  195 (304)
T 3ebb_A          121 PALDILRLSIKHPSVNENFCNEKEGAQFSSHLINLLNPKGK-P---ANQLLALRTFCNCFV-GQAGQKLMMSQRESLMSH  195 (304)
T ss_dssp             HHHHHHHHHTTSHHHHHHHHSTTTHHHHHHHHHHTTCTTSC-H---HHHHHHHHHHHHGGG-SHHHHHHHHHTHHHHHHH
T ss_pred             HHHHHHHHHHcCccHHHHhhccccchHHHHHHHHhcCCCCC-h---HHHHHHHHHHHHccC-CchhHHHHHHHHHHHHHH
Confidence            44555555556676666665443333444222 22111111 1   457889999999995 44444444432  34555


Q ss_pred             HHHhhcCCCHHHHHHHHHHHHHhhcCChhh--HHHHHhcCCHHHHHHhhc-CCCHHHHHHHHHHHHHhhcCChhHHHHHH
Q 015851          212 LVELLEFTDTKVQRAAAGALRTLAFKNDEN--KNQIVECNALPTLILMLR-SEDSAIHYEAVGVIGNLVHSSPNIKKEVL  288 (399)
Q Consensus       212 L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~--~~~~~~~~~~~~L~~ll~-~~~~~v~~~a~~~L~~l~~~~~~~~~~~~  288 (399)
                      +...+.+.+..++..++..+.|++...-..  .+..  ...+..+..+++ ..+.+....++.+|+++...+.+..+...
T Consensus       196 ~~~~~~~~nknl~iA~ATl~~NlAv~~~~~~~~~~~--~~ll~~l~~il~~~~d~EalyR~LvALGtL~~~~~~~~~lak  273 (304)
T 3ebb_A          196 AIELKSGSNKNIHIALATLALNYSVCFHKDHNIEGK--AQCLSLISTILEVVQDLEATFRLLVALGTLISDDSNAVQLAK  273 (304)
T ss_dssp             HHGGGSSCCHHHHHHHHHHHHHHHHHHHHSCCHHHH--HHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHhcCCChhHHHHHHHHHHHHHHHHhhcCCchHH--HHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhCChhHHHHHH
Confidence            666666778999999999999999731110  0110  113344445554 35889999999999999976555444444


Q ss_pred             HCCCcHHHHHhhcC
Q 015851          289 AAGALQPVIGLLSS  302 (399)
Q Consensus       289 ~~~~l~~L~~lL~~  302 (399)
                      .-|+-..+-++...
T Consensus       274 ~l~~~~~v~~~~~~  287 (304)
T 3ebb_A          274 SLGVDSQIKKYSSV  287 (304)
T ss_dssp             HTTHHHHGGGGGGC
T ss_pred             HcCHHHHHHHHHhC
Confidence            44444444444444

>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}

Probab=96.49  E-value=0.1  Score=45.24  Aligned_cols=182  Identities=13%  Similarity=0.164  Sum_probs=115.0

Q ss_pred             hHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhhH--HHHHh--cCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCCh---
Q 015851          209 IPPLVELLEFTDTKVQRAAAGALRTLAFKNDENK--NQIVE--CNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSP---  281 (399)
Q Consensus       209 i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~--~~~~~--~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~---  281 (399)
                      +| +-+-|.+.++..|..|+..|..+....+...  .....  ....+.+.+.+.+.+..+...++.++..++....   
T Consensus        12 lp-l~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~   90 (278)
T 4ffb_C           12 LP-LEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNSLIDAFASSS   90 (278)
T ss_dssp             CC-HHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC---
T ss_pred             CC-HHHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhh
Confidence            45 5678899999999999999988876433221  11111  2346677788889999999999999998874221   


Q ss_pred             --hHHHHHHHCCCcHHHHH-hhcCCChHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHH
Q 015851          282 --NIKKEVLAAGALQPVIG-LLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALG  358 (399)
Q Consensus       282 --~~~~~~~~~~~l~~L~~-lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~v~~L~~ll~~~~~~v~~~a~~~L~  358 (399)
                        .......-..+++.|+. .+.+....++..+..++..++...... ..     +++.+...+.+.++.++..++..|.
T Consensus        91 ~~~~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~-~~-----~~e~l~~~l~~Knpkv~~~~l~~l~  164 (278)
T 4ffb_C           91 LKNAHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTSI-TQ-----SVELVIPFFEKKLPKLIAAAANCVY  164 (278)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSSS-HH-----HHHHHGGGGGCSCHHHHHHHHHHHH
T ss_pred             cccchhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCcH-HH-----HHHHHHHHHhccCHHHHHHHHHHHH
Confidence              11111222345666665 477778889888888887776432111 11     2355667788899999999999999


Q ss_pred             HhhccCCCCcc------hhHHHHH--hhccccHHHHHHHHhhhHhhh
Q 015851          359 RLAQVITVSVL------PAILIFI--IINECQLEVLAFVLSEMVLLF  397 (399)
Q Consensus       359 ~l~~~~~~~~~------~~~~~~~--~~~~~~~~~~~~~l~~~~~~~  397 (399)
                      .+....+...+      +.++..+  .+.+..-.|+......++.++
T Consensus       165 ~~l~~fg~~~~~~k~~l~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly  211 (278)
T 4ffb_C          165 ELMAAFGLTNVNVQTFLPELLKHVPQLAGHGDRNVRSQTMNLIVEIY  211 (278)
T ss_dssp             HHHHHHTTTTCCHHHHHHHHGGGHHHHHTCSSHHHHHHHHHHHHHHH
T ss_pred             HHHHHhCCCcCCchhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHH
Confidence            88776443322      1122111  344555566666666655544

>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5

Probab=96.48  E-value=0.0057  Score=52.06  Aligned_cols=155  Identities=20%  Similarity=0.152  Sum_probs=95.0

Q ss_pred             hhHHHHHHhCCChHHHHhcccCCCCcccccCCCcchHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHHHhccccCc
Q 015851           94 EEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSN  173 (399)
Q Consensus        94 ~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~~~i~~L~~~L~~~~~~~  173 (399)
                      +..|......-....+..++++++.            .||..++..|   .              .+.+..++++.+.  
T Consensus        64 ~~VR~~AA~~l~~~~l~~L~~D~~~------------~VR~~aA~~L---~--------------~~~L~~ll~D~d~--  112 (244)
T 1lrv_A           64 WERRAIAVRYSPVEALTPLIRDSDE------------VVRRAVAYRL---P--------------REQLSALMFDEDR--  112 (244)
T ss_dssp             HHHHHHHHTTSCGGGGGGGTTCSSH------------HHHHHHHTTS---C--------------SGGGGGTTTCSCH--
T ss_pred             HHHHHHHHHhCCHHHHHHHccCcCH------------HHHHHHHHHC---C--------------HHHHHHHHcCCCH--
Confidence            6677766665445566667676665            6777777542   1              1234445554444  


Q ss_pred             cccccHHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhhHHHHHhcCCHHH
Q 015851          174 CSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPT  253 (399)
Q Consensus       174 ~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~  253 (399)
                            .++..++..+   .               .+.+..+++++++.+|..++..   +.               .+.
T Consensus       113 ------~VR~~aA~~l---~---------------~~~L~~L~~D~d~~VR~~aA~~---l~---------------~~~  150 (244)
T 1lrv_A          113 ------EVRITVADRL---P---------------LEQLEQMAADRDYLVRAYVVQR---IP---------------PGR  150 (244)
T ss_dssp             ------HHHHHHHHHS---C---------------TGGGGGGTTCSSHHHHHHHHHH---SC---------------GGG
T ss_pred             ------HHHHHHHHhC---C---------------HHHHHHHHcCCCHHHHHHHHHh---cC---------------HHH
Confidence                  6776666532   1               1245566778888888888762   11               123


Q ss_pred             HHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHHCCCcHHHHHhhcCCChHHHHHHHHHHHHhhccChhhHHHHHhcC
Q 015851          254 LILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRG  333 (399)
Q Consensus       254 L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g  333 (399)
                      +..+++++++.||..++..   +.               .+.+..++.++++.|+..++..+                  
T Consensus       151 l~~l~~D~d~~VR~~aa~~---l~---------------~~ll~~ll~D~d~~VR~aaa~~l------------------  194 (244)
T 1lrv_A          151 LFRFMRDEDRQVRKLVAKR---LP---------------EESLGLMTQDPEPEVRRIVASRL------------------  194 (244)
T ss_dssp             GGGTTTCSCHHHHHHHHHH---SC---------------GGGGGGSTTCSSHHHHHHHHHHC------------------
T ss_pred             HHHHHcCCCHHHHHHHHHc---CC---------------HHHHHHHHcCCCHHHHHHHHHhC------------------
Confidence            4456677888888877774   11               12344566777888888777642                  


Q ss_pred             CHHHHHHhhCCCCHHHHHHHHHHH
Q 015851          334 AVRPLIEMLQSPDVQLREMSAFAL  357 (399)
Q Consensus       334 ~v~~L~~ll~~~~~~v~~~a~~~L  357 (399)
                      ..+.|..++.++++.||..++..+
T Consensus       195 ~~~~L~~Ll~D~d~~VR~~aa~~l  218 (244)
T 1lrv_A          195 RGDDLLELLHDPDWTVRLAAVEHA  218 (244)
T ss_dssp             CGGGGGGGGGCSSHHHHHHHHHHS
T ss_pred             CHHHHHHHHcCCCHHHHHHHHHcC
Confidence            124566677777888887777764

>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}

Probab=96.42  E-value=0.062  Score=46.05  Aligned_cols=127  Identities=11%  Similarity=0.100  Sum_probs=89.9

Q ss_pred             HHHHHHHHHHHHHhh----cCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhhHHHHHhcCCHHHHH
Q 015851          180 SVIRRAADAITNLAH----ENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLI  255 (399)
Q Consensus       180 ~~~~~a~~~L~~l~~----~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~L~  255 (399)
                      .+...++.+|..+..    .+..... ....-++|.|++-+.++...+|..+-.++..+..-.+.       ..+++.++
T Consensus       102 ~v~~~~L~~L~~l~~~l~~~~y~~~~-~ea~~~lP~LveKlGd~k~~vR~~~r~il~~l~~v~~~-------~~v~~~l~  173 (266)
T 2of3_A          102 AALIKVLELCKVIVELIRDTETPMSQ-EEVSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDVVGP-------LKMTPMLL  173 (266)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCCCCH-HHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCH-------HHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhccccchH-HHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHCCH-------HHHHHHHH
Confidence            666667777666642    1111111 11134679999999999999999988888776641111       23567788


Q ss_pred             HhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHHCCCc---HHHHHhhcCCChHHHHHHHHHHHHhh
Q 015851          256 LMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGAL---QPVIGLLSSCCSESQREAALLLGQFA  319 (399)
Q Consensus       256 ~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l---~~L~~lL~~~~~~v~~~a~~~L~~l~  319 (399)
                      .-+.+.+..+|..++..+..+......  .   ....+   +.+..++.+++..+|..|..++..+-
T Consensus       174 ~g~ksKN~R~R~e~l~~l~~li~~~G~--~---~~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y  235 (266)
T 2of3_A          174 DALKSKNARQRSECLLVIEYYITNAGI--S---PLKSLSVEKTVAPFVGDKDVNVRNAAINVLVACF  235 (266)
T ss_dssp             HGGGCSCHHHHHHHHHHHHHHHHHHCS--G---GGGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHH
T ss_pred             HHHccCCHHHHHHHHHHHHHHHHhcCC--C---ccccccchHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence            888899999999999999998742111  1   23478   99999999999999999999888664

>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B

Probab=96.36  E-value=0.016  Score=60.10  Aligned_cols=144  Identities=10%  Similarity=0.049  Sum_probs=94.1

Q ss_pred             CCHHHHHHHHHHHHHhhcCChhhHHHHHhcCCHHHHHHhhcC-----CCHHHHHHHHHHHHHhhcCChhHHHHHHHCCCc
Q 015851          219 TDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRS-----EDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGAL  293 (399)
Q Consensus       219 ~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~L~~ll~~-----~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l  293 (399)
                      .++..++.++++++.++.+..+....-.-..+++.|+.++.+     +...++..++|+++..+..-..... . =..++
T Consensus       465 ~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lGry~~wl~~~~~-~-L~~vl  542 (1023)
T 4hat_C          465 WSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLCVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWN-F-LRTVI  542 (1023)
T ss_dssp             CCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCHHHHHHCHH-H-HHHHH
T ss_pred             CCHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhhhccccCcchHHHHHHHHHHHHHHHHHHhccHH-H-HHHHH
Confidence            568999999999999997544332222222367788888763     2334666788999887642111111 1 12345


Q ss_pred             HHHHHhhcCCChHHHHHHHHHHHHhhccChhhHHHHHh----------cCCHHHHHHhhCCCCHHHHHHHHHHHHHhhcc
Q 015851          294 QPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQ----------RGAVRPLIEMLQSPDVQLREMSAFALGRLAQV  363 (399)
Q Consensus       294 ~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~----------~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~  363 (399)
                      ..+++.+..+++.++..||+++.++|.   +++..+..          ..++..+......-++.-+..+..+++.+...
T Consensus       543 ~~L~~~l~~~~~~v~~~A~~al~~l~~---~c~~~l~~~~~~e~~p~~~~il~~l~~~~~~l~~~~~~~lyeai~~vi~~  619 (1023)
T 4hat_C          543 LKLFEFMHETHEGVQDMACDTFIKIVQ---KCKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGIIISE  619 (1023)
T ss_dssp             HHHHHHTTCSCHHHHHHHHHHHHHHHH---HHTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHhhcCCHHHHHHHHHHHHHHHH---HHHHHhhccCCCCCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHh
Confidence            556666767778999999999999984   45555532          12233344444445777778999999999998


Q ss_pred             CCCC
Q 015851          364 ITVS  367 (399)
Q Consensus       364 ~~~~  367 (399)
                      .++.
T Consensus       620 ~~~~  623 (1023)
T 4hat_C          620 ERSV  623 (1023)
T ss_dssp             CCSH
T ss_pred             CCCH
Confidence            8753

>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}

Probab=96.21  E-value=0.14  Score=44.96  Aligned_cols=135  Identities=13%  Similarity=0.084  Sum_probs=87.5

Q ss_pred             CHHHHHHHHHHHHHhhcCChhhHHHHHhc--CCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChh--HHHHHHHCCCcHH
Q 015851          220 DTKVQRAAAGALRTLAFKNDENKNQIVEC--NALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPN--IKKEVLAAGALQP  295 (399)
Q Consensus       220 ~~~v~~~a~~~L~~L~~~~~~~~~~~~~~--~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~--~~~~~~~~~~l~~  295 (399)
                      .+..+-.++++++|+-. ++.++..+...  .+++.+...+.+++..++..++.++.|++.....  ....  ...++..
T Consensus       161 ~p~n~ml~lR~l~NlF~-~~~g~~~l~~~~~~il~~~~~~~~~~nknl~iA~ATl~~NlAv~~~~~~~~~~--~~~ll~~  237 (304)
T 3ebb_A          161 KPANQLLALRTFCNCFV-GQAGQKLMMSQRESLMSHAIELKSGSNKNIHIALATLALNYSVCFHKDHNIEG--KAQCLSL  237 (304)
T ss_dssp             CHHHHHHHHHHHHHGGG-SHHHHHHHHHTHHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHHHSCCHHH--HHHHHHH
T ss_pred             ChHHHHHHHHHHHHccC-CchhHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhhcCCchH--HHHHHHH
Confidence            46678999999999998 67777766652  3455555555667889999999999999853110  0011  0113444


Q ss_pred             HHHhhc-CCChHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHhhCC-CCHHHHHHHHHHH
Q 015851          296 VIGLLS-SCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQS-PDVQLREMSAFAL  357 (399)
Q Consensus       296 L~~lL~-~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~v~~L~~ll~~-~~~~v~~~a~~~L  357 (399)
                      +..++. ..+.+..-.++.+|+++...+.+..+.....|+-..+-++... ..++|.+.+...+
T Consensus       238 l~~il~~~~d~EalyR~LvALGtL~~~~~~~~~lak~l~~~~~v~~~~~~~~~~kv~~~~~~~~  301 (304)
T 3ebb_A          238 ISTILEVVQDLEATFRLLVALGTLISDDSNAVQLAKSLGVDSQIKKYSSVSEPAKVSECCRFIL  301 (304)
T ss_dssp             HHHHHTTCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHGGGGGGCCSSHHHHHHHHHHH
T ss_pred             HHHHHhccCCHHHHHHHHHHHHHHHhCChhHHHHHHHcCHHHHHHHHHhCCCchhHHHHHHHHH
Confidence            445554 3577888889999999997655555544455666666666654 4566666554443

>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}

Probab=96.19  E-value=0.0054  Score=57.45  Aligned_cols=176  Identities=17%  Similarity=0.103  Sum_probs=117.1

Q ss_pred             HHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhhHHHHHhcCCHHHHHHhhc
Q 015851          180 SVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLR  259 (399)
Q Consensus       180 ~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~L~~ll~  259 (399)
                      .+++.++.+|+.+ .+-+.-      ..++..++..+..+.++++..++-.|..+..    ....  -.++++.++..|.
T Consensus       243 PVRETaAQtLGaL-~hLp~e------~~IL~qLV~~l~~~~WEVRHGGLLGLKYL~D----LL~~--Ld~Vv~aVL~GL~  309 (800)
T 3oc3_A          243 PVRDAAAYLLSRI-YPLIGP------NDIIEQLVGFLDSGDWQVQFSGLIALGYLKE----FVED--KDGLCRKLVSLLS  309 (800)
T ss_dssp             HHHHHHHHHHHHH-TTTSCS------CCHHHHHTTGGGCSCHHHHHHHHHHHHHTGG----GCCC--HHHHHHHHHHHTT
T ss_pred             ehHHHHHHHHHHH-HhCChh------HHHHHHHHhhcCCCCeeehhhhHHHHHHHHH----HHHH--HHHHHHHHHhhcC
Confidence            7999999999998 544432      3344555555577889999999999998821    1111  1346788888999


Q ss_pred             CCCHHHHHHHHHHHHHhhcCChhHHHHHHHCCCcHHHHHhhcCCCh--HHHHHHHHHHHHhhccChhhHHHHHhcCCHHH
Q 015851          260 SEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCS--ESQREAALLLGQFAATDSDCKVHIVQRGAVRP  337 (399)
Q Consensus       260 ~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~--~v~~~a~~~L~~l~~~~~~~~~~l~~~g~v~~  337 (399)
                      +.+++|+..|+.+|.-++  .+.....     ++..+...|.+-+.  .........|+.++...+.   .-.....+|.
T Consensus       310 D~DDDVRAVAAetLiPIA--~p~~l~~-----LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~~---a~~dp~LVPR  379 (800)
T 3oc3_A          310 SPDEDIKLLSAELLCHFP--ITDSLDL-----VLEKCWKNIESEELISVSKTSNLSLLTKIYRENPE---LSIPPERLKD  379 (800)
T ss_dssp             CSSHHHHHHHHHHHTTSC--CSSTHHH-----HHHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCTT---CCCCSGGGGG
T ss_pred             CcccHHHHHHHHHhhhhc--chhhHHH-----HHHHHHHHhhhhcccchhhHHHHHHHHHHHcCCcc---cccChHHHHH
Confidence            999999999999999998  2332222     24555555543211  2223344566666654321   1112478999


Q ss_pred             HHHhhCCCCHHHHHHHHHHHHHhhccCCCCcchhHHHHHhhccc
Q 015851          338 LIEMLQSPDVQLREMSAFALGRLAQVITVSVLPAILIFIIINEC  381 (399)
Q Consensus       338 L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~  381 (399)
                      |..++.++-+.||.++..+|..+.   ..+++..+-+-+++++.
T Consensus       380 L~PFLRHtITSVR~AVL~TL~tfL---~~~~LRLIFQNILLE~n  420 (800)
T 3oc3_A          380 IFPCFTSPVPEVRTSILNMVKNLS---EESIDFLVAEVVLIEEK  420 (800)
T ss_dssp             TGGGGTCSSHHHHHHHHHHTTTCC---CHHHHHHHHHHHHHCSC
T ss_pred             HHhhhcCCcHHHHHHHHHHHHHHH---hhhHHHHHHHHHHhCCc
Confidence            999999999999999999998887   33345555555555555

>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*

Probab=96.17  E-value=0.092  Score=54.27  Aligned_cols=102  Identities=13%  Similarity=-0.021  Sum_probs=66.2

Q ss_pred             CHHHHHHHHHHHHHhhcCChhHHHHH-HHCCCc----HHHHHhhc-----CCChHHHHHHHHHHHHhhccChhhHHHHHh
Q 015851          262 DSAIHYEAVGVIGNLVHSSPNIKKEV-LAAGAL----QPVIGLLS-----SCCSESQREAALLLGQFAATDSDCKVHIVQ  331 (399)
Q Consensus       262 ~~~v~~~a~~~L~~l~~~~~~~~~~~-~~~~~l----~~L~~lL~-----~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~  331 (399)
                      +-..++.++.+|+.++.+-....... -....+    +.+..+++     .+++.++..++++++..+..-..+      
T Consensus       456 ~W~~~EaaL~~l~~iaE~i~~~~~~~~~~~~~lp~l~~ll~~ll~s~i~~~~hp~V~~~~~~~l~rys~~~~~~------  529 (980)
T 3ibv_A          456 SWQLIEFALYETYIFGEGLRGPDAFFNEVDKSPTVLSQILALVTTSQVCRHPHPLVQLLYMEILVRYASFFDYE------  529 (980)
T ss_dssp             HHHHHHHHHHHHHHTTTTCCSGGGTBCSSSCCBCHHHHHHHHHHHSSTTTCCCHHHHHHHHHHHHHTGGGGGTC------
T ss_pred             CHHHHHHHHHHHHHHHhhccccccccCcccchhHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHhcC------
Confidence            34678889999999886533211110 011223    44444444     567899999999999988643221      


Q ss_pred             cCCHHHHHHhh------CCCCHHHHHHHHHHHHHhhccCCCCcc
Q 015851          332 RGAVRPLIEML------QSPDVQLREMSAFALGRLAQVITVSVL  369 (399)
Q Consensus       332 ~g~v~~L~~ll------~~~~~~v~~~a~~~L~~l~~~~~~~~~  369 (399)
                      ...++.++..+      .++++.|+..|+.++.++++.......
T Consensus       530 ~~~l~~~L~~ll~~~gl~~~~~~V~~~a~~af~~f~~~~~~~L~  573 (980)
T 3ibv_A          530 SAAIPALIEYFVGPRGIHNTNERVRPRAWYLFYRFVKSIKKQVV  573 (980)
T ss_dssp             CTTHHHHHHHHTSTTTTTCCCTTTHHHHHHHHHHHHHHTTTTCS
T ss_pred             chhHHHHHHHHhccccccCCChhHHHHHHHHHHHHHHHhhHHhh
Confidence            23445544444      356788999999999999998887533

>3c2g_A SYS-1 protein; beta-catenin, phylogeny, SYS-1, developmental protein, DNA-binding, nucleus; 2.50A {Caenorhabditis elegans} PDB: 3c2h_A*

Probab=96.09  E-value=0.074  Score=46.73  Aligned_cols=131  Identities=10%  Similarity=0.116  Sum_probs=99.4

Q ss_pred             HHHhhcCChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHHCCCcHHHHHhhc-CCChHHHH
Q 015851          231 LRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLS-SCCSESQR  309 (399)
Q Consensus       231 L~~L~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~-~~~~~v~~  309 (399)
                      |.+|..+..+...-+++..++..+....+.++.++....+..|-..+.. ... ...--.+.+|.++..+. +++.++.-
T Consensus       266 LL~LLmHdSnAIDGFVk~DGv~~I~TvinYpN~~l~RaG~KLLLQVSDa-ksL-~~t~L~e~LPFi~~~i~~h~eDdvvY  343 (619)
T 3c2g_A          266 LLGLLLHDSDAIDGFVRSDGVGAITTVVQYPNNDLIRAGCKLLLQVSDA-KAL-AKTPLENILPFLLRLIEIHPDDEVIY  343 (619)
T ss_dssp             HHHHHCCSHHHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHTTC-GGG-GTSCCTTHHHHHHHHHHHCCCHHHHH
T ss_pred             HHHHHhcccccccceeecccceeEEEEeecCCcHHHHhhhheeeeecch-HHH-hhccccccchHHHHHhccCCCcceEE
Confidence            4566666777888899999999999999999999999999999888632 111 11111346777787776 67778888


Q ss_pred             HHHHHHHHhhccChhhHHHHHhcCCHHHHHHhhC-C------CCHHHHHHHHHHHHHhhcc
Q 015851          310 EAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQ-S------PDVQLREMSAFALGRLAQV  363 (399)
Q Consensus       310 ~a~~~L~~l~~~~~~~~~~l~~~g~v~~L~~ll~-~------~~~~v~~~a~~~L~~l~~~  363 (399)
                      ...+.|+|..++....++..+..|+++.|...+. .      .+..-++.|+.+++|.-+.
T Consensus       344 SGTGFLSNVVAHKq~VKelAI~~nAI~LLh~~I~ky~~Lsdf~ea~Kkk~aC~IicN~LRa  404 (619)
T 3c2g_A          344 SGTGFLSNVVAHKQHVKDIAIRSNAIFLLHTIISKYPRLDELTDAPKRNRVCEIICNCLRT  404 (619)
T ss_dssp             HHHHHHHHHSTTCHHHHHHHHHTTHHHHHHHHHHTSCCGGGCCSHHHHHHHHHHHHHHHHH
T ss_pred             ecchHHHHHHhcccchHHHHhccCcHHHHHHHHhhCCChhhhhhhhhhcchHHHHHHHHHH
Confidence            9999999999887777788888999999998873 1      3555667777777766543

>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}

Probab=96.03  E-value=0.011  Score=55.41  Aligned_cols=238  Identities=14%  Similarity=0.129  Sum_probs=138.6

Q ss_pred             hhhhHHHHHHHHHHHHHHcCC-hhHHHHHHhC--CChHHHHhccc-C-----CCCcccccCCCcchHHHHHHHHHHHHHh
Q 015851           73 LEADRAAAKRATHVLAELAKN-EEVVNWIVEG--GAVPALVKHLQ-A-----PPTSEADRNLKPFEHEVEKGSAFALGLL  143 (399)
Q Consensus        73 ~~~~~~~~~~a~~~L~~l~~~-~~~~~~~~~~--g~l~~L~~lL~-~-----~~~~~~~~~~~~~~~~~~~~a~~~L~~l  143 (399)
                      -++.-++|.-|+-.|+.+.+. ..........  ++.-.|+.++. +     .++.+..        .||+.|+.+|+.+
T Consensus       184 Fdp~WEiRHGAALGLREILR~hG~GAGR~~~~N~DLAvRLLCVLALDRFGDYVSDqVVA--------PVRETaAQtLGaL  255 (800)
T 3oc3_A          184 LSYEWYKRHGAFLAFAAMFSEIDNGGDIQIRVDSKLFSKIYEILVTDKFNDFVDDRTVA--------PVRDAAAYLLSRI  255 (800)
T ss_dssp             TCSSHHHHHHHHHHHHHHHHHCC----CCCCCCTTHHHHHHHHHHHBCCBBCSSSSCBC--------HHHHHHHHHHHHH
T ss_pred             cCcchhhhhHHHHHHHHHHHHhccCCceeccccHHHHHHHHHHHHhccccccccCeeee--------ehHHHHHHHHHHH
Confidence            355678999999999998762 2110000001  11222222221 1     1112222        7899999999998


Q ss_pred             cCChhhHHHHHhcCcHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhhcCCCHHH
Q 015851          144 AVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKV  223 (399)
Q Consensus       144 ~~~~~~~~~i~~~~~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v  223 (399)
                      - .-+..     ..++..++..+..        ..|+++.-++-.|.++...-.   .   -.++++.++.-|.+.+.+|
T Consensus       256 ~-hLp~e-----~~IL~qLV~~l~~--------~~WEVRHGGLLGLKYL~DLL~---~---Ld~Vv~aVL~GL~D~DDDV  315 (800)
T 3oc3_A          256 Y-PLIGP-----NDIIEQLVGFLDS--------GDWQVQFSGLIALGYLKEFVE---D---KDGLCRKLVSLLSSPDEDI  315 (800)
T ss_dssp             T-TTSCS-----CCHHHHHTTGGGC--------SCHHHHHHHHHHHHHTGGGCC---C---HHHHHHHHHHHTTCSSHHH
T ss_pred             H-hCChh-----HHHHHHHHhhcCC--------CCeeehhhhHHHHHHHHHHHH---H---HHHHHHHHHhhcCCcccHH
Confidence            3 22111     2334444432222        346999999999999821111   1   2456788888899999999


Q ss_pred             HHHHHHHHHHhhcCChhhHHHHHhcCCHHHHHHhhcCC-CH-HHHHHHHHHHHHhhcCChhHHHHHHHCCCcHHHHHhhc
Q 015851          224 QRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSE-DS-AIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLS  301 (399)
Q Consensus       224 ~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~L~~ll~~~-~~-~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~  301 (399)
                      +..|+.+|.-++.  ++....+     +..+...|.+- |- .........|+.|+.....   ...+...+|.|..++.
T Consensus       316 RAVAAetLiPIA~--p~~l~~L-----L~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~~---a~~dp~LVPRL~PFLR  385 (800)
T 3oc3_A          316 KLLSAELLCHFPI--TDSLDLV-----LEKCWKNIESEELISVSKTSNLSLLTKIYRENPE---LSIPPERLKDIFPCFT  385 (800)
T ss_dssp             HHHHHHHHTTSCC--SSTHHHH-----HHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCTT---CCCCSGGGGGTGGGGT
T ss_pred             HHHHHHHhhhhcc--hhhHHHH-----HHHHHHHhhhhcccchhhHHHHHHHHHHHcCCcc---cccChHHHHHHHhhhc
Confidence            9999999998882  3322222     33344444332 11 2233344455555543221   1112367899999999


Q ss_pred             CCChHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHH
Q 015851          302 SCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALG  358 (399)
Q Consensus       302 ~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~v~~L~~ll~~~~~~v~~~a~~~L~  358 (399)
                      ++-+.||..++.+|..+.  +....+.+.        .+++-..+++++..+..+-.
T Consensus       386 HtITSVR~AVL~TL~tfL--~~~~LRLIF--------QNILLE~neeIl~lS~~VWk  432 (800)
T 3oc3_A          386 SPVPEVRTSILNMVKNLS--EESIDFLVA--------EVVLIEEKDEIREMAIKLLK  432 (800)
T ss_dssp             CSSHHHHHHHHHHTTTCC--CHHHHHHHH--------HHHHHCSCHHHHHHHHHHHH
T ss_pred             CCcHHHHHHHHHHHHHHH--hhhHHHHHH--------HHHHhCCcHHHHHHHHHHHH
Confidence            999999999999998886  233333222        23555678888888777664

>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B

Probab=96.02  E-value=0.32  Score=50.87  Aligned_cols=177  Identities=12%  Similarity=0.074  Sum_probs=100.7

Q ss_pred             HHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhhc--CCCHHHHHHHHHHHHHhhcCChhhHHHHHhcCCHHHHHHh
Q 015851          180 SVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLE--FTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILM  257 (399)
Q Consensus       180 ~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~--~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~L~~l  257 (399)
                      +....+..+|..++...+.   .+. .-+.+.+-..+.  +.++..++.++++++.++.........-.-..+++.+..+
T Consensus       428 ~~~~~~~~~L~~l~~~~~~---~~l-~~v~~~l~~~l~~~~~~W~~~eaal~algsia~~~~~~~e~~~l~~v~~~l~~l  503 (1049)
T 3m1i_C          428 QLYKSEREVLVYLTHLNVI---DTE-EIMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDL  503 (1049)
T ss_dssp             HHHHHHHHHHHHHHHHCHH---HHH-HHHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHccCHH---HHH-HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhcccCchhhHHHHHHHHHHHHHH
Confidence            3444566677777643321   111 112234444444  3568899999999999986433221111111244445554


Q ss_pred             hcC-----CCHHHHHHHHHHHHHhhcCChhHHHHHHHCCCcHHHHHhhcCCChHHHHHHHHHHHHhhccChhhHHHHH--
Q 015851          258 LRS-----EDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIV--  330 (399)
Q Consensus       258 l~~-----~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~--  330 (399)
                      ...     +.+-++..++++++..+..-......  -..+++.++..|.++++.++..|++++.+++..   +...+.  
T Consensus       504 ~~~~~~~~~~~~v~~~~~~~lgry~~~~~~~~~~--l~~vl~~ll~~l~~~~~~V~~~A~~al~~l~~~---~~~~l~~~  578 (1049)
T 3m1i_C          504 TVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNF--LRTVILKLFEFMHETHEGVQDMACDTFIKIVQK---CKYHFVIQ  578 (1049)
T ss_dssp             TTSSCSHHHHHHHHHHHHHHHHHCHHHHHHCHHH--HHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHH---HTHHHHSC
T ss_pred             HhhhccccchHHHHHHHHHHHHHHHHHHHhHHHH--HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH---HHHHhhcc
Confidence            332     23345556889999876321111111  123567777788888899999999999999853   333433  


Q ss_pred             --------hcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhccCC
Q 015851          331 --------QRGAVRPLIEMLQSPDVQLREMSAFALGRLAQVIT  365 (399)
Q Consensus       331 --------~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~  365 (399)
                              -..++..+..++..-+.+-......+++.++...+
T Consensus       579 ~~~~~~p~~~~il~~l~~~~~~~~~~~~~~~~eai~~ii~~~~  621 (1049)
T 3m1i_C          579 QPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGIIISEER  621 (1049)
T ss_dssp             CTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHHHTCC
T ss_pred             cCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHcCC
Confidence                    12234444455555555556677788888876655

>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A

Probab=95.90  E-value=1.1  Score=46.48  Aligned_cols=104  Identities=12%  Similarity=0.114  Sum_probs=62.7

Q ss_pred             CHHHHHHHHHHHHHhhcCChhHHHHHHHCCCcHHHHHhhcCCC-----hHHHHHHHHHHHHhhccChhhHHHHHhcCCHH
Q 015851          262 DSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCC-----SESQREAALLLGQFAATDSDCKVHIVQRGAVR  336 (399)
Q Consensus       262 ~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~-----~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~v~  336 (399)
                      +-.....++|+++.++..-......-.-..+++.|+.+...+.     ..++...+++++..+..-..+-+.+..  .+.
T Consensus       492 sW~~lea~~~aigaIag~~~~~~E~~~Lp~vi~~Ll~L~e~~~~kd~k~~vas~i~~vlgrY~~wl~~h~~~L~~--vl~  569 (1073)
T 3gjx_A          492 SWKNLNTLCWAIGSISGAMHEEDEKRFLVTVIKDLLGLCEQKRGKDNKAIIASNIMYIVGQYPRFLRAHWKFLKT--VVN  569 (1073)
T ss_dssp             CHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHCHHHHHHCHHHHHH--HHH
T ss_pred             CHHHHhHHHHHHHHHHCcCCcccccchHHHHHHHHhcccccccccchhHHHHHHHHHHHhhhHHHHHhCHHHHHH--HHH
Confidence            3566777888888886432211111111234555555554331     234555667888776542233232222  467


Q ss_pred             HHHHhhCCCCHHHHHHHHHHHHHhhccCCCC
Q 015851          337 PLIEMLQSPDVQLREMSAFALGRLAQVITVS  367 (399)
Q Consensus       337 ~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~  367 (399)
                      .|++.+.++++.|+.+|+.++..++..-...
T Consensus       570 ~L~~~m~~~~~~vq~aA~~af~~i~~~C~~~  600 (1073)
T 3gjx_A          570 KLFEFMHETHDGVQDMACDTFIKIAQKCRRH  600 (1073)
T ss_dssp             HHHHHTTCCSTTHHHHHHHHHHHHHHHTGGG
T ss_pred             HHHHHHhcCCHHHHHHHHHHHHHHHHHHHHH
Confidence            7778888889999999999999999876643

>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B

Probab=95.83  E-value=0.032  Score=57.83  Aligned_cols=141  Identities=11%  Similarity=0.020  Sum_probs=86.4

Q ss_pred             cHHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhhcC-----CCHHHHHHHHHHHHHhhcCChhhHHHHHhcCCHH
Q 015851          178 VNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEF-----TDTKVQRAAAGALRTLAFKNDENKNQIVECNALP  252 (399)
Q Consensus       178 ~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~-----~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~~  252 (399)
                      .|..++.++++++.++.........-.-..+++.|+.++.+     +...++..++++++..+..-... ..+.. ..+.
T Consensus       466 ~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lGry~~wl~~~-~~~L~-~vl~  543 (1023)
T 4hat_C          466 SWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLCVKKRGKDNKAVVASDIMYVVGQYPRFLKAH-WNFLR-TVIL  543 (1023)
T ss_dssp             CHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCHHHHHHC-HHHHH-HHHH
T ss_pred             CHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhhhccccCcchHHHHHHHHHHHHHHHHHHhcc-HHHHH-HHHH
Confidence            46888999999999995444322323334667888888764     22345566778888776521111 11222 1445


Q ss_pred             HHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHH------CCCcHHHHHh----hcCCChHHHHHHHHHHHHhhccC
Q 015851          253 TLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLA------AGALQPVIGL----LSSCCSESQREAALLLGQFAATD  322 (399)
Q Consensus       253 ~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~------~~~l~~L~~l----L~~~~~~v~~~a~~~L~~l~~~~  322 (399)
                      .|+..+.++++.++..|++++.+++..   ++..+..      ...++.++..    +..-++.-...+..+++.+....
T Consensus       544 ~L~~~l~~~~~~v~~~A~~al~~l~~~---c~~~l~~~~~~e~~p~~~~il~~l~~~~~~l~~~~~~~lyeai~~vi~~~  620 (1023)
T 4hat_C          544 KLFEFMHETHEGVQDMACDTFIKIVQK---CKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGIIISEE  620 (1023)
T ss_dssp             HHHHHTTCSCHHHHHHHHHHHHHHHHH---HTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHhhcCCHHHHHHHHHHHHHHHHH---HHHHhhccCCCCCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhC
Confidence            566666667889999999999999853   3333432      1234444433    33345566677778888887653


Q ss_pred             h
Q 015851          323 S  323 (399)
Q Consensus       323 ~  323 (399)
                      +
T Consensus       621 ~  621 (1023)
T 4hat_C          621 R  621 (1023)
T ss_dssp             C
T ss_pred             C
Confidence            3

>3c2g_A SYS-1 protein; beta-catenin, phylogeny, SYS-1, developmental protein, DNA-binding, nucleus; 2.50A {Caenorhabditis elegans} PDB: 3c2h_A*

Probab=95.64  E-value=0.28  Score=43.16  Aligned_cols=134  Identities=15%  Similarity=0.245  Sum_probs=98.0

Q ss_pred             HHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhhHHHHHhcCCHHHHHHhhc-CC
Q 015851          183 RRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLR-SE  261 (399)
Q Consensus       183 ~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~L~~ll~-~~  261 (399)
                      ..+...|.-|. ++...-+-++...++..+......++.++.+..+..|...+. ....+..-. ...+|.++..+. ++
T Consensus       261 tR~FDLL~LLm-HdSnAIDGFVk~DGv~~I~TvinYpN~~l~RaG~KLLLQVSD-aksL~~t~L-~e~LPFi~~~i~~h~  337 (619)
T 3c2g_A          261 IRTFDLLGLLL-HDSDAIDGFVRSDGVGAITTVVQYPNNDLIRAGCKLLLQVSD-AKALAKTPL-ENILPFLLRLIEIHP  337 (619)
T ss_dssp             HHHHHHHHHHC-CSHHHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHTT-CGGGGTSCC-TTHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHh-cccccccceeecccceeEEEEeecCCcHHHHhhhheeeeecc-hHHHhhccc-cccchHHHHHhccCC
Confidence            33444444444 677777778889999999999999999999999999999886 232221111 346888887776 67


Q ss_pred             CHHHHHHHHHHHHHhhcCChhHHHHHHHCCCcHHHHHhhcCC-------ChHHHHHHHHHHHHhh
Q 015851          262 DSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSC-------CSESQREAALLLGQFA  319 (399)
Q Consensus       262 ~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~-------~~~v~~~a~~~L~~l~  319 (399)
                      +.++.....+.|+|...+....+...+..|++..|-..+...       +..-+..||..++|..
T Consensus       338 eDdvvYSGTGFLSNVVAHKq~VKelAI~~nAI~LLh~~I~ky~~Lsdf~ea~Kkk~aC~IicN~L  402 (619)
T 3c2g_A          338 DDEVIYSGTGFLSNVVAHKQHVKDIAIRSNAIFLLHTIISKYPRLDELTDAPKRNRVCEIICNCL  402 (619)
T ss_dssp             CHHHHHHHHHHHHHHSTTCHHHHHHHHHTTHHHHHHHHHHTSCCGGGCCSHHHHHHHHHHHHHHH
T ss_pred             CcceEEecchHHHHHHhcccchHHHHhccCcHHHHHHHHhhCCChhhhhhhhhhcchHHHHHHHH
Confidence            889999999999999988777778888999999888876421       2234455666665544

>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B

Probab=95.37  E-value=0.63  Score=48.64  Aligned_cols=137  Identities=10%  Similarity=0.081  Sum_probs=79.0

Q ss_pred             HHHHHHHHHHHhhcCChhhHHHHHhcCCHHHHHHhhcC--CCHHHHHHHHHHHHHhhcCChhHHHHHHHCCCcHHHHHhh
Q 015851          223 VQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRS--EDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLL  300 (399)
Q Consensus       223 v~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~L~~ll~~--~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL  300 (399)
                      .+..+..+|..++.-.+.   .+... +.+.+-..+.+  .+...+..++++++.++.........-.-..+++.+..+.
T Consensus       429 ~~~~~~~~L~~l~~~~~~---~~l~~-v~~~l~~~l~~~~~~W~~~eaal~algsia~~~~~~~e~~~l~~v~~~l~~l~  504 (1049)
T 3m1i_C          429 LYKSEREVLVYLTHLNVI---DTEEI-MISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLT  504 (1049)
T ss_dssp             HHHHHHHHHHHHHHHCHH---HHHHH-HHHHHHHHHTSSSCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHccCHH---HHHHH-HHHHHHHHhCCCCCCHHHHHHHHHHHHHHhcccCchhhHHHHHHHHHHHHHHH
Confidence            344566677776642221   11111 23344444442  4668899999999999754322211111112344444432


Q ss_pred             cC-----CChHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhccCC
Q 015851          301 SS-----CCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQVIT  365 (399)
Q Consensus       301 ~~-----~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~  365 (399)
                      ..     +.+.++..++++++.++..-..+...+.  .+++.++..+.++++.|+..|+.++.++++..+
T Consensus       505 ~~~~~~~~~~~v~~~~~~~lgry~~~~~~~~~~l~--~vl~~ll~~l~~~~~~V~~~A~~al~~l~~~~~  572 (1049)
T 3m1i_C          505 VKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNFLR--TVILKLFEFMHETHEGVQDMACDTFIKIVQKCK  572 (1049)
T ss_dssp             TSSCSHHHHHHHHHHHHHHHHHCHHHHHHCHHHHH--HHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHT
T ss_pred             hhhccccchHHHHHHHHHHHHHHHHHHHhHHHHHH--HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHH
Confidence            21     2334555688999988743222222222  346778888888899999999999999998755

>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}

Probab=95.00  E-value=0.29  Score=40.78  Aligned_cols=131  Identities=15%  Similarity=0.091  Sum_probs=91.2

Q ss_pred             HHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHH-hhcCCCHHHHHHHHHHHHHhhc-CChhhHHHHHhcCCHHHHHHh
Q 015851          180 SVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVE-LLEFTDTKVQRAAAGALRTLAF-KNDENKNQIVECNALPTLILM  257 (399)
Q Consensus       180 ~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~-ll~~~~~~v~~~a~~~L~~L~~-~~~~~~~~~~~~~~~~~L~~l  257 (399)
                      +++..++..|+.+ ...         ...++.+.. +..+++..|+..++.++..++. ..++        ..++.+...
T Consensus        86 eVR~~Av~lLg~~-~~~---------~~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe--------~~l~~~~~W  147 (240)
T 3l9t_A           86 QVRMYAVFLFGYL-SKD---------KEILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYK--------KALPIIDEW  147 (240)
T ss_dssp             HHHHHHHHHHHHT-TTS---------HHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTT--------TTHHHHHHH
T ss_pred             HHHHHHHHHHHhc-cCc---------HHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHH--------HHHHHHHHH
Confidence            8888898888777 211         123555665 5567789999999999999985 3333        267888899


Q ss_pred             hcCCCHHHHHHHHHHHHHhhcCChhHHHHHHHCCCcHHHHHhhcCCChHHHHHHHHHHHHhhccChhhHHHHHh
Q 015851          258 LRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQ  331 (399)
Q Consensus       258 l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~  331 (399)
                      ..+++..+|..|...+.--+.. +..+..  -.-+++.+-.+..+++.-|++..++.|..++..+|+-...+++
T Consensus       148 ~~d~n~~VRR~Ase~~rpW~~~-~~~k~d--p~~ll~iL~~L~~D~s~yVrKSVan~LrD~SK~~Pd~V~~~~~  218 (240)
T 3l9t_A          148 LKSSNLHTRRAATEGLRIWTNR-PYFKEN--PNEAIRRIADLKEDVSEYVRKSVGNALRDISKKFPDLVKIELK  218 (240)
T ss_dssp             HHCSSHHHHHHHHHHTCSGGGS-TTTTTC--HHHHHHHHHTTTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             hcCCCHHHHHHHHHhhHHHhcc-chhhcC--HHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhhCHHHHHHHHH
Confidence            9999999999988876432211 110000  0013555556666788899999999999999888877666555

>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}

Probab=94.92  E-value=0.36  Score=40.19  Aligned_cols=138  Identities=13%  Similarity=0.017  Sum_probs=97.5

Q ss_pred             hHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhhHHHHHhcCCHHHHHH-hhcCCCHHHHHHHHHHHHHhhc-CChhHHHH
Q 015851          209 IPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLIL-MLRSEDSAIHYEAVGVIGNLVH-SSPNIKKE  286 (399)
Q Consensus       209 i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~L~~-ll~~~~~~v~~~a~~~L~~l~~-~~~~~~~~  286 (399)
                      ++....+..++..++|..|+..|+.+ ...         ...++.+.. +-.+++=.|+..++.++..++. ..++.   
T Consensus        73 ~~la~~L~~~~~deVR~~Av~lLg~~-~~~---------~~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe~---  139 (240)
T 3l9t_A           73 KKLAFLAYQSDVYQVRMYAVFLFGYL-SKD---------KEILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYKK---  139 (240)
T ss_dssp             HHHHHHHHTCSSHHHHHHHHHHHHHT-TTS---------HHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTTT---
T ss_pred             HHHHHHHHhCcchHHHHHHHHHHHhc-cCc---------HHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHHH---
Confidence            34455566777789999999988877 311         124566666 4446677999999999999884 33332   


Q ss_pred             HHHCCCcHHHHHhhcCCChHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhccCCC
Q 015851          287 VLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQVITV  366 (399)
Q Consensus       287 ~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~  366 (399)
                           .++.+..+..+++..+|..|...+.-.+.. +..+  ....-+++.|-.+..+++.-||+...+.|..+++..|+
T Consensus       140 -----~l~~~~~W~~d~n~~VRR~Ase~~rpW~~~-~~~k--~dp~~ll~iL~~L~~D~s~yVrKSVan~LrD~SK~~Pd  211 (240)
T 3l9t_A          140 -----ALPIIDEWLKSSNLHTRRAATEGLRIWTNR-PYFK--ENPNEAIRRIADLKEDVSEYVRKSVGNALRDISKKFPD  211 (240)
T ss_dssp             -----THHHHHHHHHCSSHHHHHHHHHHTCSGGGS-TTTT--TCHHHHHHHHHTTTTCSCHHHHHHHHHHHHHHHTTCHH
T ss_pred             -----HHHHHHHHhcCCCHHHHHHHHHhhHHHhcc-chhh--cCHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhhCHH
Confidence                 577888999999999999988876543322 1100  00112456666677789999999999999999999886


Q ss_pred             C
Q 015851          367 S  367 (399)
Q Consensus       367 ~  367 (399)
                      -
T Consensus       212 ~  212 (240)
T 3l9t_A          212 L  212 (240)
T ss_dssp             H
T ss_pred             H
Confidence            3

>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}

Probab=94.70  E-value=1.6  Score=36.50  Aligned_cols=146  Identities=14%  Similarity=0.220  Sum_probs=96.7

Q ss_pred             hcCChHHHHHhhcC-----------CCHHHHHHHHHHHHHhhcCChhhHHHHHh-cCCHHHHHHhhcCCCHHHHHHHHHH
Q 015851          205 MEGGIPPLVELLEF-----------TDTKVQRAAAGALRTLAFKNDENKNQIVE-CNALPTLILMLRSEDSAIHYEAVGV  272 (399)
Q Consensus       205 ~~~~i~~L~~ll~~-----------~~~~v~~~a~~~L~~L~~~~~~~~~~~~~-~~~~~~L~~ll~~~~~~v~~~a~~~  272 (399)
                      ..+|+..|+..|..           .+...+..++.||..+.. +..+...+.. .+.+..++..|.++++.++..++..
T Consensus        41 ~~~Gl~~L~~~L~~~~~~~~~~~~~~~~~~~~~~l~CLkalmn-~~~G~~~vl~~~~~i~~l~~~L~s~~~~~r~~~leL  119 (233)
T 2f31_A           41 GAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMN-NKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKL  119 (233)
T ss_dssp             HHHHHHHHHHHHHHHHTCC-----CCHHHHHHHHHHHHHHHTS-SHHHHHHHHTSSSHHHHHHTTCCTTSHHHHHHHHHH
T ss_pred             HHhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHhC-ChHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHH
Confidence            35677777766642           135678889999999997 6667766666 5678999999999999999999999


Q ss_pred             HHHhhcCCh-hH-HHHHH----------HCCCcHHHHHhhcC-CChHHHHHHHHHHHHhhccChh------hHHHHHhcC
Q 015851          273 IGNLVHSSP-NI-KKEVL----------AAGALQPVIGLLSS-CCSESQREAALLLGQFAATDSD------CKVHIVQRG  333 (399)
Q Consensus       273 L~~l~~~~~-~~-~~~~~----------~~~~l~~L~~lL~~-~~~~v~~~a~~~L~~l~~~~~~------~~~~l~~~g  333 (399)
                      |..+|..+. .+ ...++          +..-+..+++.+.. .+.+.+..+...+..+....++      .+..+...|
T Consensus       120 L~~lc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~~~~e~~~~~m~lIN~li~~~~dl~~R~~lR~ef~~~G  199 (233)
T 2f31_A          120 LSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVHIRSELMRLG  199 (233)
T ss_dssp             HHHHHTCSSSSCHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHTT
T ss_pred             HHHHHhCCCCCChHHHHHHHHHHHHHhCCcchHHHHHHHHhcCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCC
Confidence            998886543 22 22222          23356778888874 4456666666666666544332      233455677


Q ss_pred             CHHHHHHhhCCCCHHHHH
Q 015851          334 AVRPLIEMLQSPDVQLRE  351 (399)
Q Consensus       334 ~v~~L~~ll~~~~~~v~~  351 (399)
                      +.+.+-++-..+++.+..
T Consensus       200 l~~il~~l~~~~~~~L~~  217 (233)
T 2f31_A          200 LHQVLQELREIENEDMKV  217 (233)
T ss_dssp             HHHHHHHHHHCCCHHHHH
T ss_pred             hHHHHHHHhccCCHHHHH
Confidence            777776665555655543

>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*

Probab=94.68  E-value=2.5  Score=38.41  Aligned_cols=143  Identities=15%  Similarity=0.231  Sum_probs=97.1

Q ss_pred             cCChHHHHHhhc-----------CCCHHHHHHHHHHHHHhhcCChhhHHHHHh-cCCHHHHHHhhcCCCHHHHHHHHHHH
Q 015851          206 EGGIPPLVELLE-----------FTDTKVQRAAAGALRTLAFKNDENKNQIVE-CNALPTLILMLRSEDSAIHYEAVGVI  273 (399)
Q Consensus       206 ~~~i~~L~~ll~-----------~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~-~~~~~~L~~ll~~~~~~v~~~a~~~L  273 (399)
                      .+|+..|+..|.           ..+...+..+++||..+.. +..+...+.. ...+..++..+.++.+.++..++..|
T Consensus       108 ~~Gl~~Ll~iL~~~~~~~~~~~~~~d~~~q~~~l~CLkalmN-~~~G~~~vl~~~~~i~~l~~~L~s~~~~~~~~aleLL  186 (383)
T 3eg5_B          108 AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMN-NKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLL  186 (383)
T ss_dssp             HHHHHHHHHHHHHHHTCC-------CHHHHHHHHHHHHHHTS-SHHHHHHHHTCSSHHHHHHHTCCTTSHHHHHHHHHHH
T ss_pred             HccHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHhc-chhhHHHHHcChHHHHHHHHHhCCCchHHHHHHHHHH
Confidence            566777777763           1245788899999999997 5667666666 57799999999999999999999999


Q ss_pred             HHhhcCCh-hH-HHHHH----------HCCCcHHHHHhhcC-CChHHHHHHHHHHHHhhccChh------hHHHHHhcCC
Q 015851          274 GNLVHSSP-NI-KKEVL----------AAGALQPVIGLLSS-CCSESQREAALLLGQFAATDSD------CKVHIVQRGA  334 (399)
Q Consensus       274 ~~l~~~~~-~~-~~~~~----------~~~~l~~L~~lL~~-~~~~v~~~a~~~L~~l~~~~~~------~~~~l~~~g~  334 (399)
                      ..+|.... .+ ...++          +..-+..++..|.. .+.+.+..+...|..+....++      .+..+...|+
T Consensus       187 ~~lc~~~~~~gG~~~VL~Al~~~~~~~e~~RF~~lv~~L~~~~~~e~~~~~m~lIN~li~~~~dl~~R~~lR~ef~~~Gl  266 (383)
T 3eg5_B          187 SALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVHIRSELMRLGL  266 (383)
T ss_dssp             HHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHTTH
T ss_pred             HHHHhCcCcCCcHHHHHHHHHHHHHhCCCCcHHHHHHHHHccCcHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCh
Confidence            99986543 22 22222          23457888888886 4556666666666666654332      2334556777


Q ss_pred             HHHHHHhhCCCCHHH
Q 015851          335 VRPLIEMLQSPDVQL  349 (399)
Q Consensus       335 v~~L~~ll~~~~~~v  349 (399)
                      .+.+-++=..+++.+
T Consensus       267 ~~il~~lr~~~~~~L  281 (383)
T 3eg5_B          267 HQVLQELREIENEDM  281 (383)
T ss_dssp             HHHHHHHTTSCCHHH
T ss_pred             HHHHHHHhcCCChhH
Confidence            777766444344433

>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1

Probab=94.33  E-value=3.1  Score=43.38  Aligned_cols=164  Identities=20%  Similarity=0.206  Sum_probs=95.3

Q ss_pred             hHHHHHhhcC----CCHHHHHHHHHHHHHhhcCChhhHHHHHhcCCHHH----HHHhhcCCCHHHHHHHHHHHHHhhcCC
Q 015851          209 IPPLVELLEF----TDTKVQRAAAGALRTLAFKNDENKNQIVECNALPT----LILMLRSEDSAIHYEAVGVIGNLVHSS  280 (399)
Q Consensus       209 i~~L~~ll~~----~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~----L~~ll~~~~~~v~~~a~~~L~~l~~~~  280 (399)
                      +..+..++.+    .++.++..++-+++.|....-... ..+....++.    +...+...+.+-+..++.+|+|+..  
T Consensus       393 l~~~~~l~~~~~~~~~~~l~~ta~La~gslV~k~c~~~-~~c~~~~v~~i~~~l~~~~~~~~~~~~~~~LkaLGN~g~--  469 (1056)
T 1lsh_A          393 LSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANT-VSCPDELLQPLHDLLSQSSDRAKEEEIVLALKALGNAGQ--  469 (1056)
T ss_dssp             HHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTC-SSCCGGGTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTC--
T ss_pred             HHHHHHHHhCcccccCHHHHHHHHHHHHHHHHHHhccC-CCCCHHHHHHHHHHHHHHHhcCChHHHHHHHHHhhccCC--
Confidence            4445566654    457788888888887775110000 0111122333    4444556778888899999999963  


Q ss_pred             hhHHHHHHHCCCcHHHHHhhcC-------CChHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHhh--CCCCHHHHH
Q 015851          281 PNIKKEVLAAGALQPVIGLLSS-------CCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEML--QSPDVQLRE  351 (399)
Q Consensus       281 ~~~~~~~~~~~~l~~L~~lL~~-------~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~v~~L~~ll--~~~~~~v~~  351 (399)
                      +.         .++.|..++..       ....++..|+++|.+++...+...        -+.++++.  ...++++|.
T Consensus       470 p~---------~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~~p~~v--------~~il~~i~~n~~e~~EvRi  532 (1056)
T 1lsh_A          470 PN---------SIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRDPRKV--------QEIVLPIFLNVAIKSELRI  532 (1056)
T ss_dssp             GG---------GHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTCHHHH--------HHHHHHHHHCTTSCHHHHH
T ss_pred             hh---------HHHHHHHhhcCccccccccchHHHHHHHHHHHHhhhhchHHH--------HHHHHHHhcCCCCChHHHH
Confidence            43         35666666632       234788899999999975443322        23455555  456888888


Q ss_pred             HHHHHHHHhhccCCCCcchhHHHHHhhccccHHHHHHHHhhhHh
Q 015851          352 MSAFALGRLAQVITVSVLPAILIFIIINECQLEVLAFVLSEMVL  395 (399)
Q Consensus       352 ~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  395 (399)
                      +|...|...  +++...+..+...+ ..|...+|..++.+.|-.
T Consensus       533 aA~~~Lm~t--~P~~~~l~~ia~~l-~~E~~~QV~sfv~S~l~s  573 (1056)
T 1lsh_A          533 RSCIVFFES--KPSVALVSMVAVRL-RREPNLQVASFVYSQMRS  573 (1056)
T ss_dssp             HHHHHHHHT--CCCHHHHHHHHHHH-TTCSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHH--CcCHHHHHHHHHHH-hhCchHHHHHHHHHHHHH
Confidence            887777432  23322333333222 344566777777766543

>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A

Probab=94.23  E-value=1.2  Score=41.22  Aligned_cols=131  Identities=15%  Similarity=0.056  Sum_probs=91.9

Q ss_pred             cCCCHHHHHHHHHHHHHhhcCChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHHCCCcHHH
Q 015851          217 EFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPV  296 (399)
Q Consensus       217 ~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L  296 (399)
                      ..+++..++.|+..|.....+.|+.....     +..++.++.+++..+|..|+..|..+|..  +....     +.+.|
T Consensus        38 ~kg~~k~K~LaaQ~I~kffk~FP~l~~~A-----i~a~lDLcEDed~~IR~qaik~Lp~~ck~--~~i~k-----iaDvL  105 (507)
T 3u0r_A           38 VKGGTKEKRLAAQFIPKFFKHFPELADSA-----INAQLDLCEDEDVSIRRQAIKELPQFATG--ENLPR-----VADIL  105 (507)
T ss_dssp             GGSCHHHHHHHHHHHHHHGGGCGGGHHHH-----HHHHHHHHTCSSHHHHHHHHHHGGGGCCT--TCHHH-----HHHHH
T ss_pred             cCCCHHHHHHHHHHHHHHHhhChhhHHHH-----HHHHHHHHhcccHHHHHHHHHhhHHHhhh--hhhhh-----HHHHH
Confidence            34579999999999999988888876654     55699999999999999999999999975  33333     46788


Q ss_pred             HHhhcCCChHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhccCCCC
Q 015851          297 IGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQVITVS  367 (399)
Q Consensus       297 ~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~  367 (399)
                      .++|++.++......-.+|..+...++..        .+..+..-+..+++.+|+.+...|..=...-+..
T Consensus       106 ~QlLqtdd~~E~~~V~~sL~sllk~Dpk~--------tl~~lf~~i~~~~e~~Rer~lkFi~~kl~~l~~~  168 (507)
T 3u0r_A          106 TQLLQTDDSAEFNLVNNALLSIFKMDAKG--------TLGGLFSQILQGEDIVRERAIKFLSTKLKTLPDE  168 (507)
T ss_dssp             HHHTTCCCHHHHHHHHHHHHHHHHHCHHH--------HHHHHHHHHHHSCHHHHHHHHHHHHHHGGGSCTT
T ss_pred             HHHHhccchHHHHHHHHHHHHHHhcChHH--------HHHHHHHHHcccchHHHHHHHHHHHHHHhhcchh
Confidence            99999888766555556666665444322        1222333333346778888887776655554443

>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}

Probab=93.96  E-value=2.2  Score=35.77  Aligned_cols=163  Identities=20%  Similarity=0.234  Sum_probs=96.6

Q ss_pred             ChhhHHHHHhcCcHHHHHHHHhccccCccc---cccHHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhhcCCCHH
Q 015851          146 KPEHQQLIVDNGALSHLVNLLKRHMDSNCS---RAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTK  222 (399)
Q Consensus       146 ~~~~~~~i~~~~~i~~L~~~L~~~~~~~~~---~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~  222 (399)
                      .....+.+ ..+|+..|+.+|.........   +...+.+..++.+|..+..........+.....+..+...|.++++.
T Consensus        33 ~~~Wv~~F-~~~Gl~~L~~~L~~~~~~~~~~~~~~~~~~~~~~l~CLkalmn~~~G~~~vl~~~~~i~~l~~~L~s~~~~  111 (233)
T 2f31_A           33 PVSWVQTF-GAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPN  111 (233)
T ss_dssp             CHHHHHHH-HHHHHHHHHHHHHHHHTCC-----CCHHHHHHHHHHHHHHHTSSHHHHHHHHTSSSHHHHHHTTCCTTSHH
T ss_pred             CcHHHHHH-HHhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHhCChHHHHHHHcCcHHHHHHHHHhCCCCch
Confidence            34455555 467888888888764321110   11236778899999999844444444444457789999999999999


Q ss_pred             HHHHHHHHHHHhhcCCh-hh-HHHHH----------hcCCHHHHHHhhcC-CCHHHHHHHHHHHHHhhcCChh------H
Q 015851          223 VQRAAAGALRTLAFKND-EN-KNQIV----------ECNALPTLILMLRS-EDSAIHYEAVGVIGNLVHSSPN------I  283 (399)
Q Consensus       223 v~~~a~~~L~~L~~~~~-~~-~~~~~----------~~~~~~~L~~ll~~-~~~~v~~~a~~~L~~l~~~~~~------~  283 (399)
                      ++..++..|..++.... ++ ...+.          +..-+..++..+.. .+.+.+..+...+-.+..+.++      .
T Consensus       112 ~r~~~leLL~~lc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~~~~e~~~~~m~lIN~li~~~~dl~~R~~l  191 (233)
T 2f31_A          112 MMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVHI  191 (233)
T ss_dssp             HHHHHHHHHHHHHTCSSSSCHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHTTCCCHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHHhCCcchHHHHHHHHhcCChHHHHHHHHHHHHHHHCCCCCHHHHHHH
Confidence            99999999998887433 24 33332          22345567777764 4456665555555555544332      2


Q ss_pred             HHHHHHCCCcHHHHHhhcCCChHHHH
Q 015851          284 KKEVLAAGALQPVIGLLSSCCSESQR  309 (399)
Q Consensus       284 ~~~~~~~~~l~~L~~lL~~~~~~v~~  309 (399)
                      +..+...|+.+.+-.+=...++.+..
T Consensus       192 R~ef~~~Gl~~il~~l~~~~~~~L~~  217 (233)
T 2f31_A          192 RSELMRLGLHQVLQELREIENEDMKV  217 (233)
T ss_dssp             HHHHHHTTHHHHHHHHHHCCCHHHHH
T ss_pred             HHHHHHCChHHHHHHHhccCCHHHHH
Confidence            33444555554444333334444433

>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A

Probab=93.26  E-value=1.4  Score=40.75  Aligned_cols=117  Identities=19%  Similarity=0.157  Sum_probs=83.6

Q ss_pred             HHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhhHHHHHhcCCHHHHHHhhc
Q 015851          180 SVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLR  259 (399)
Q Consensus       180 ~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~L~~ll~  259 (399)
                      ...+.++..|.....+-|..++.     ++..+++++.+++..||..|.+.|..+|.+  +...     .+..+|+++|+
T Consensus        43 k~K~LaaQ~I~kffk~FP~l~~~-----Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~--~~i~-----kiaDvL~QlLq  110 (507)
T 3u0r_A           43 KEKRLAAQFIPKFFKHFPELADS-----AINAQLDLCEDEDVSIRRQAIKELPQFATG--ENLP-----RVADILTQLLQ  110 (507)
T ss_dssp             HHHHHHHHHHHHHGGGCGGGHHH-----HHHHHHHHHTCSSHHHHHHHHHHGGGGCCT--TCHH-----HHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHhhChhhHHH-----HHHHHHHHHhcccHHHHHHHHHhhHHHhhh--hhhh-----hHHHHHHHHHh
Confidence            78888999999999888876653     467799999999999999999999999974  4433     24667999999


Q ss_pred             CCCHHHHHHHHHHHHHhhcCChhHHHHHHHCCCcHHHHHhhcCCChHHHHHHHHHHH
Q 015851          260 SEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLG  316 (399)
Q Consensus       260 ~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~  316 (399)
                      .+++.-....-.+|..+...++..        .+..+...+.+++..+|+.+...|.
T Consensus       111 tdd~~E~~~V~~sL~sllk~Dpk~--------tl~~lf~~i~~~~e~~Rer~lkFi~  159 (507)
T 3u0r_A          111 TDDSAEFNLVNNALLSIFKMDAKG--------TLGGLFSQILQGEDIVRERAIKFLS  159 (507)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHCHHH--------HHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred             ccchHHHHHHHHHHHHHHhcChHH--------HHHHHHHHHcccchHHHHHHHHHHH
Confidence            888766666666666665444433        2333444444445666666665553

>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*

Probab=92.81  E-value=3.7  Score=37.25  Aligned_cols=162  Identities=20%  Similarity=0.236  Sum_probs=99.7

Q ss_pred             ChhhHHHHHhcCcHHHHHHHHhccccCccc---cccHHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhhcCCCHH
Q 015851          146 KPEHQQLIVDNGALSHLVNLLKRHMDSNCS---RAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTK  222 (399)
Q Consensus       146 ~~~~~~~i~~~~~i~~L~~~L~~~~~~~~~---~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~  222 (399)
                      .....+.|. .+|+..|+.+|.........   .........++.+|..+..........+.....+..+...+.+.++.
T Consensus        99 ~~sWV~~F~-~~Gl~~Ll~iL~~~~~~~~~~~~~~d~~~q~~~l~CLkalmN~~~G~~~vl~~~~~i~~l~~~L~s~~~~  177 (383)
T 3eg5_B           99 PVSWVQTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPN  177 (383)
T ss_dssp             CHHHHHHHH-HHHHHHHHHHHHHHHTCC-------CHHHHHHHHHHHHHHTSSHHHHHHHHTCSSHHHHHHHTCCTTSHH
T ss_pred             ccHHHHHHH-HccHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHhcchhhHHHHHcChHHHHHHHHHhCCCchH
Confidence            344555665 67899999998753211100   11126778888999998844444444444457889999999999999


Q ss_pred             HHHHHHHHHHHhhcCCh-hh-HHHHH----------hcCCHHHHHHhhcC-CCHHHHHHHHHHHHHhhcCChh------H
Q 015851          223 VQRAAAGALRTLAFKND-EN-KNQIV----------ECNALPTLILMLRS-EDSAIHYEAVGVIGNLVHSSPN------I  283 (399)
Q Consensus       223 v~~~a~~~L~~L~~~~~-~~-~~~~~----------~~~~~~~L~~ll~~-~~~~v~~~a~~~L~~l~~~~~~------~  283 (399)
                      ++..++..|..+|.... .+ ...++          +..-+..++..|.. .+.+.+..+...+-.+..+.++      .
T Consensus       178 ~~~~aleLL~~lc~~~~~~gG~~~VL~Al~~~~~~~e~~RF~~lv~~L~~~~~~e~~~~~m~lIN~li~~~~dl~~R~~l  257 (383)
T 3eg5_B          178 MMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVHI  257 (383)
T ss_dssp             HHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHTTCCCHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCcCcCCcHHHHHHHHHHHHHhCCCCcHHHHHHHHHccCcHHHHHHHHHHHHHHHcCCCCHHHHHHH
Confidence            99999999999997543 33 33332          23446778888876 4566666555555555544332      2


Q ss_pred             HHHHHHCCCcHHHHHhhcC-CChHHHH
Q 015851          284 KKEVLAAGALQPVIGLLSS-CCSESQR  309 (399)
Q Consensus       284 ~~~~~~~~~l~~L~~lL~~-~~~~v~~  309 (399)
                      +..+...|+.+.+-. |+. .++.+..
T Consensus       258 R~ef~~~Gl~~il~~-lr~~~~~~L~~  283 (383)
T 3eg5_B          258 RSELMRLGLHQVLQE-LREIENEDMKV  283 (383)
T ss_dssp             HHHHHHTTHHHHHHH-HTTSCCHHHHH
T ss_pred             HHHHHHCChHHHHHH-HhcCCChhHHH
Confidence            344445665555554 553 4444443

>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B

Probab=92.06  E-value=6.8  Score=35.52  Aligned_cols=144  Identities=14%  Similarity=0.231  Sum_probs=95.5

Q ss_pred             cCChHHHHHhhcC-----------CCHHHHHHHHHHHHHhhcCChhhHHHHHh-cCCHHHHHHhhcCCCHHHHHHHHHHH
Q 015851          206 EGGIPPLVELLEF-----------TDTKVQRAAAGALRTLAFKNDENKNQIVE-CNALPTLILMLRSEDSAIHYEAVGVI  273 (399)
Q Consensus       206 ~~~i~~L~~ll~~-----------~~~~v~~~a~~~L~~L~~~~~~~~~~~~~-~~~~~~L~~ll~~~~~~v~~~a~~~L  273 (399)
                      .+|+..|+..|..           .+......+++||..+.. +..+...+.. .+++..+...+.++++.++..++..|
T Consensus        46 ~~Gl~~Ll~~L~~~~~~~~~~~~~~d~~~~~~~l~CLkalmN-~~~Gl~~vl~~~~~i~~l~~sL~s~~~~~r~~vleLL  124 (386)
T 2bnx_A           46 AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMN-NKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLL  124 (386)
T ss_dssp             HHHHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHHHHTS-SHHHHHHHHHSSSHHHHHHHTCCTTSHHHHHHHHHHH
T ss_pred             HhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhC-CHHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHH
Confidence            4566666666531           135778899999999997 5666666665 57789999999999999999999999


Q ss_pred             HHhhcCCh-hH-HHHHH----------HCCCcHHHHHhhc-CCChHHHHHHHHHHHHhhccChh------hHHHHHhcCC
Q 015851          274 GNLVHSSP-NI-KKEVL----------AAGALQPVIGLLS-SCCSESQREAALLLGQFAATDSD------CKVHIVQRGA  334 (399)
Q Consensus       274 ~~l~~~~~-~~-~~~~~----------~~~~l~~L~~lL~-~~~~~v~~~a~~~L~~l~~~~~~------~~~~l~~~g~  334 (399)
                      ..+|..+. .+ ...++          +..-+..++..+. +.+.+.+..++..+..+....++      .+..+...|+
T Consensus       125 ~alc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~~~~e~~~a~m~lIN~lv~~~~dl~~R~~LR~Ef~~~GL  204 (386)
T 2bnx_A          125 SALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVHIRSELMRLGL  204 (386)
T ss_dssp             HHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHHTSTTSCHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTH
T ss_pred             HHHHcCCCCCChHHHHHHHHHHHHHhCchhhHHHHHHHHHcCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCh
Confidence            88886543 22 22222          2345677888886 44556666666666666654332      3345566777


Q ss_pred             HHHHHHhhCCCCHHHH
Q 015851          335 VRPLIEMLQSPDVQLR  350 (399)
Q Consensus       335 v~~L~~ll~~~~~~v~  350 (399)
                      .+.+-++-...++.+.
T Consensus       205 ~~il~~Lr~~~~~~L~  220 (386)
T 2bnx_A          205 HQVLQELREIENEDMK  220 (386)
T ss_dssp             HHHHHHHTTCCCHHHH
T ss_pred             HHHHHHHhccCChhHH
Confidence            7776655554555443

>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A

Probab=91.93  E-value=9.5  Score=39.67  Aligned_cols=205  Identities=10%  Similarity=0.021  Sum_probs=123.7

Q ss_pred             HHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhhcC-----chhHHHHHh
Q 015851          131 EVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHEN-----SSIKTRVRM  205 (399)
Q Consensus       131 ~~~~~a~~~L~~l~~~~~~~~~i~~~~~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~-----~~~~~~~~~  205 (399)
                      +.|.+|-..|..+-.+|+...         .+..+|....+.       .++..++.+|.+.....     +..+. ...
T Consensus        43 ~~r~qA~~~L~q~q~sp~aw~---------~~~~iL~~s~~~-------~vR~fAa~~L~~~I~~~W~~L~~e~~~-~LR  105 (1073)
T 3gjx_A           43 AQQRMAQEVLTHLKEHPDAWT---------RVDTILEFSQNM-------NTKYYGLQILENVIKTRWKILPRNQCE-GIK  105 (1073)
T ss_dssp             HHHHHHHHHHHTSSCCSCHHH---------HHTCC---CCSH-------HHHHHHHHHHHHHHHHTGGGSCHHHHH-HHH
T ss_pred             HHHHHHHHHHHHHHcCchHHH---------HHHHHhcCCCCH-------HHHHHHHHHHHHHHHhhhhhCCHHHHH-HHH
Confidence            567788888877776665433         333444443222       88888999999988532     12222 222


Q ss_pred             cCChHHHHHhhcC-----CCHHHHHHHHHHHHHhhcCC-hhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcC
Q 015851          206 EGGIPPLVELLEF-----TDTKVQRAAAGALRTLAFKN-DENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHS  279 (399)
Q Consensus       206 ~~~i~~L~~ll~~-----~~~~v~~~a~~~L~~L~~~~-~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~  279 (399)
                      ...+..+......     .++.++...+.++..++... ++     .....++-++..+.. ++......+.+|..+...
T Consensus       106 ~~Ll~~l~~~~~~~~~~e~~~~vinKLa~~La~I~k~~~P~-----~Wp~fi~dLv~~~~~-~~~~~~~~L~IL~~L~EE  179 (1073)
T 3gjx_A          106 KYVVGLIIKTSSDPTCVEKEKVYIGKLNMILVQILKQEWPK-----HWPTFISDIVGASRT-SESLCQNNMVILKLLSEE  179 (1073)
T ss_dssp             HHHHHHHHHHHTCGGGGTSCHHHHHHHHHHHHHHHHHHTTT-----TCTTHHHHHHHHHHH-CHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHccCccccccchHHHHHHHHHHHHHHHHhChh-----hccHHHHHHHHHhCC-CHHHHHHHHHHHHHHHHH
Confidence            3344444443322     24677888888888888631 11     134567777777654 345556677777776532


Q ss_pred             ---C------hh----HHHHHHHCCCcHHHHHh----hc-CCChHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHH-HH
Q 015851          280 ---S------PN----IKKEVLAAGALQPVIGL----LS-SCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPL-IE  340 (399)
Q Consensus       280 ---~------~~----~~~~~~~~~~l~~L~~l----L~-~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~v~~L-~~  340 (399)
                         .      ..    .+..+..  -++.++.+    |. ..++.+...+..+|..+.+.-  ....+.+.++++.+ ..
T Consensus       180 V~d~~~~~l~~~r~~~lk~~L~~--~~~~Il~ll~~iL~~~~~~~lv~~~L~~L~~~~sWI--~i~~i~~~~ll~~L~~~  255 (1073)
T 3gjx_A          180 VFDFSSGQITQVKAKHLKDSMCN--EFSQIFQLCQFVMENSQNAPLVHATLETLLRFLNWI--PLGYIFETKLISTLIYK  255 (1073)
T ss_dssp             HTTSHHHHBCHHHHHHHHHHHHH--TCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTS--CTHHHHSSSHHHHHHHH
T ss_pred             HHhcccccccHHHHHHHHHHHHH--HHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHhc--CHHHhccchHHHHHHHH
Confidence               0      00    1112222  24555544    33 456677788888888887543  33467788888888 46


Q ss_pred             hhCCCCHHHHHHHHHHHHHhhccC
Q 015851          341 MLQSPDVQLREMSAFALGRLAQVI  364 (399)
Q Consensus       341 ll~~~~~~v~~~a~~~L~~l~~~~  364 (399)
                      ++  +++.++..|+.+|..+....
T Consensus       256 ~L--~~~~~r~aA~dcL~eIv~k~  277 (1073)
T 3gjx_A          256 FL--NVPMFRNVSLKCLTEIAGVS  277 (1073)
T ss_dssp             TS--SSHHHHHHHHHHHHHHHHSC
T ss_pred             hc--CChHHHHHHHHHHHHHHhcc
Confidence            66  47889999999999988753

>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B

Probab=91.86  E-value=7.2  Score=35.37  Aligned_cols=162  Identities=20%  Similarity=0.229  Sum_probs=97.7

Q ss_pred             hhhHHHHHhcCcHHHHHHHHhccccCccc---cccHHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhhcCCCHHH
Q 015851          147 PEHQQLIVDNGALSHLVNLLKRHMDSNCS---RAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKV  223 (399)
Q Consensus       147 ~~~~~~i~~~~~i~~L~~~L~~~~~~~~~---~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v  223 (399)
                      ....+.|. .+|+..|+.+|.........   +........++.+|..+..........+....++..+...+.+.++.+
T Consensus        38 ~~Wv~~F~-~~Gl~~Ll~~L~~~~~~~~~~~~~~d~~~~~~~l~CLkalmN~~~Gl~~vl~~~~~i~~l~~sL~s~~~~~  116 (386)
T 2bnx_A           38 VSWVQTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNM  116 (386)
T ss_dssp             HHHHHHHH-HHHHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHHHHTSSHHHHHHHHHSSSHHHHHHHTCCTTSHHH
T ss_pred             cHHHHHHH-HhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCCHHHHHHHHcCcHHHHHHHHHhCCCCchH
Confidence            34444554 56788888888654221110   112377788999999998544444444445578899999999999999


Q ss_pred             HHHHHHHHHHhhcCCh-hh-HHHHH----------hcCCHHHHHHhhcC-CCHHHHHHHHHHHHHhhcCChh------HH
Q 015851          224 QRAAAGALRTLAFKND-EN-KNQIV----------ECNALPTLILMLRS-EDSAIHYEAVGVIGNLVHSSPN------IK  284 (399)
Q Consensus       224 ~~~a~~~L~~L~~~~~-~~-~~~~~----------~~~~~~~L~~ll~~-~~~~v~~~a~~~L~~l~~~~~~------~~  284 (399)
                      +..++..|..+|.... .+ ...+.          +..-+..++..+.. .+.+.+..+...+-.+..+.++      .+
T Consensus       117 r~~vleLL~alc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~~~~e~~~a~m~lIN~lv~~~~dl~~R~~LR  196 (386)
T 2bnx_A          117 MIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVHIR  196 (386)
T ss_dssp             HHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHHTSTTSCHHHHHHHHHHHHHHHTTCSCHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCCCCChHHHHHHHHHHHHHhCchhhHHHHHHHHHcCChHHHHHHHHHHHHHHHCCCCCHHHHHHHH
Confidence            9999999998887443 23 33322          22345567777763 4556666555555555544332      23


Q ss_pred             HHHHHCCCcHHHHHhhcCCChHHHH
Q 015851          285 KEVLAAGALQPVIGLLSSCCSESQR  309 (399)
Q Consensus       285 ~~~~~~~~l~~L~~lL~~~~~~v~~  309 (399)
                      ..+...|+.+.+-.+=...++.+..
T Consensus       197 ~Ef~~~GL~~il~~Lr~~~~~~L~~  221 (386)
T 2bnx_A          197 SELMRLGLHQVLQELREIENEDMKV  221 (386)
T ss_dssp             HHHHHTTHHHHHHHHTTCCCHHHHH
T ss_pred             HHHHHCChHHHHHHHhccCChhHHH
Confidence            4455566555554443344544443

>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1

Probab=91.49  E-value=1.9  Score=45.04  Aligned_cols=175  Identities=15%  Similarity=0.109  Sum_probs=107.3

Q ss_pred             cHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhh----cCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHH
Q 015851          158 ALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAH----ENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRT  233 (399)
Q Consensus       158 ~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~----~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~  233 (399)
                      .+..+..+++.......    ..+...++-+++.|..    .++.+..... ..+...+.+.+...+..-+..++++|+|
T Consensus       392 ~l~~~~~l~~~~~~~~~----~~l~~ta~La~gslV~k~c~~~~~c~~~~v-~~i~~~l~~~~~~~~~~~~~~~LkaLGN  466 (1056)
T 1lsh_A          392 SLSYARELLNTSFIRNR----PILRKTAVLGYGSLVFRYCANTVSCPDELL-QPLHDLLSQSSDRAKEEEIVLALKALGN  466 (1056)
T ss_dssp             HHHHHHHHHTCHHHHTC----HHHHHHHHHHHHHHHHHHHTTCSSCCGGGT-HHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCcccccC----HHHHHHHHHHHHHHHHHHhccCCCCCHHHH-HHHHHHHHHHHhcCChHHHHHHHHHhhc
Confidence            45556666655431110    0455666666666653    2221111000 1122334445566778888999999999


Q ss_pred             hhcCChhhHHHHHhcCCHHHHHHhhcC-------CCHHHHHHHHHHHHHhhcCChhHHHHHHHCCCcHHHHHhh--cCCC
Q 015851          234 LAFKNDENKNQIVECNALPTLILMLRS-------EDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLL--SSCC  304 (399)
Q Consensus       234 L~~~~~~~~~~~~~~~~~~~L~~ll~~-------~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL--~~~~  304 (399)
                      +-.  +         ..++.|.+++..       ....++..|+++|.+++...+...        -+.++++.  ...+
T Consensus       467 ~g~--p---------~~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~~p~~v--------~~il~~i~~n~~e~  527 (1056)
T 1lsh_A          467 AGQ--P---------NSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRDPRKV--------QEIVLPIFLNVAIK  527 (1056)
T ss_dssp             HTC--G---------GGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTCHHHH--------HHHHHHHHHCTTSC
T ss_pred             cCC--h---------hHHHHHHHhhcCccccccccchHHHHHHHHHHHHhhhhchHHH--------HHHHHHHhcCCCCC
Confidence            996  3         246667777642       245788999999999986544332        34466666  3567


Q ss_pred             hHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHhhC-CCCHHHHHHHHHHHHHhhccCCC
Q 015851          305 SESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQ-SPDVQLREMSAFALGRLAQVITV  366 (399)
Q Consensus       305 ~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~v~~L~~ll~-~~~~~v~~~a~~~L~~l~~~~~~  366 (399)
                      +++|..|+..|.... .+...         +..+...+. +++.+|.......|.++++....
T Consensus       528 ~EvRiaA~~~Lm~t~-P~~~~---------l~~ia~~l~~E~~~QV~sfv~S~l~sla~s~~P  580 (1056)
T 1lsh_A          528 SELRIRSCIVFFESK-PSVAL---------VSMVAVRLRREPNLQVASFVYSQMRSLSRSSNP  580 (1056)
T ss_dssp             HHHHHHHHHHHHHTC-CCHHH---------HHHHHHHHTTCSCHHHHHHHHHHHHHHTTCCSG
T ss_pred             hHHHHHHHHHHHHHC-cCHHH---------HHHHHHHHhhCchHHHHHHHHHHHHHHHhcCCc
Confidence            799999999887643 11222         334444453 57899999999999999987765

>3qml_C Protein SLS1, nucleotide exchange factor SIL1; armadillo like repeats, chaperone-protein transport complex; 2.31A {Saccharomyces cerevisiae}

Probab=89.66  E-value=6.1  Score=34.20  Aligned_cols=178  Identities=13%  Similarity=0.084  Sum_probs=106.0

Q ss_pred             HHHHHHHHHHHHHhhcCchhHHHHHhc--CChHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhhHHHHHh--cCCHHHHH
Q 015851          180 SVIRRAADAITNLAHENSSIKTRVRME--GGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVE--CNALPTLI  255 (399)
Q Consensus       180 ~~~~~a~~~L~~l~~~~~~~~~~~~~~--~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~--~~~~~~L~  255 (399)
                      +-...++..|.-++. +-..-..+..+  ..+..|+ +.....+.+++.++++|+.....+|.....+.+  ..++..+.
T Consensus        43 ~~le~aLD~L~ElSH-Di~~G~KI~~~ef~lL~nL~-~~~~~~~~~rE~aarII~ssLRNNP~Al~~V~~~~p~fv~~lf  120 (315)
T 3qml_C           43 ARLEDSFDRIMEFAH-DYKHGYKIITHEFALLANLS-LNENLPLTLRELSTRVITSCLRNNPPVVEFINESFPNFKSKIM  120 (315)
T ss_dssp             HHHHHHHHHHGGGTT-SHHHHHHHHHHHHHHHHHHH-HCTTSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHCTTHHHHHH
T ss_pred             HHHHHHHHHHHHhhh-hHHhhhHHHhCcHHHHHHHH-hhccCChhHHHHHHHHHHHHHccCHHHHHHHHHhChhHHHHHH
Confidence            467788888888884 44333344432  3333444 233456789999999999999988888777766  34444433


Q ss_pred             Hhhc----C---CCHHHHHHHHHHHHHhhcCChhHHHHHHHCCCcHHHHHhhcCC--ChHHHHHHHHHHHHhhcc---Ch
Q 015851          256 LMLR----S---EDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSC--CSESQREAALLLGQFAAT---DS  323 (399)
Q Consensus       256 ~ll~----~---~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~--~~~v~~~a~~~L~~l~~~---~~  323 (399)
                      .-|.    .   ....+...-+++|.-|...+...     ....+..|.+++...  ++.++..++..+..+-..   ..
T Consensus       121 ~~L~~~~~~~~~~~~~l~KR~LsII~~L~~~~~~F-----~~~~m~~L~~ly~~~~~d~~~k~Kvl~li~d~f~~~~~~~  195 (315)
T 3qml_C          121 AALSNLNDSNHRSSNILIKRYLSILNELPVTSEDL-----PIYSTVVLQNVYERNNKDKQLQIKVLELISKILKADMYEN  195 (315)
T ss_dssp             HHHHHHHCC--CCCHHHHHHHHHHHHHSCCCSTTC-------CCHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHTTC-
T ss_pred             HHHHHHhhcccchhHHHHHHHHHHHHHHhcChHhh-----hhccHHHHHHHHccCCCCHHHHHHHHHHHHHHcccccccc
Confidence            3332    2   24467788888999888653222     245678888887766  788999888877766521   00


Q ss_pred             ------hhHHHHHh--c---CCHHHHHHhhCC--CCHHHHHHHHHHHHHhhccC
Q 015851          324 ------DCKVHIVQ--R---GAVRPLIEMLQS--PDVQLREMSAFALGRLAQVI  364 (399)
Q Consensus       324 ------~~~~~l~~--~---g~v~~L~~ll~~--~~~~v~~~a~~~L~~l~~~~  364 (399)
                            ..++.+-+  .   +....+-+++++  .+..-.+.--..|.+|-+..
T Consensus       196 ~~~~~~~~kR~~e~~~~~~q~w~~~~q~~iq~k~~dE~~~r~fF~~L~~ik~~~  249 (315)
T 3qml_C          196 DDTNLILFKRNAENWSSNLQEWANEFQEMVQNKSIDELHTRTFFDTLYNLKKIF  249 (315)
T ss_dssp             ------------------CHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHHHHH
T ss_pred             cccccchhhhcccccCchHHHHHHHHHHHHhccccCHHHHHHHHHHHHHHHHhc
Confidence                  11111110  1   123445566653  34444555667777777655

>3qml_C Protein SLS1, nucleotide exchange factor SIL1; armadillo like repeats, chaperone-protein transport complex; 2.31A {Saccharomyces cerevisiae}

Probab=89.24  E-value=5.4  Score=34.52  Aligned_cols=145  Identities=11%  Similarity=0.126  Sum_probs=94.1

Q ss_pred             HHHHhhcCC------CHHHHHHHHHHHHHhhcCChhhHHHHHhcCCHHHHHHhh--cCCCHHHHHHHHHHHHHhhcCChh
Q 015851          211 PLVELLEFT------DTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILML--RSEDSAIHYEAVGVIGNLVHSSPN  282 (399)
Q Consensus       211 ~L~~ll~~~------~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~L~~ll--~~~~~~v~~~a~~~L~~l~~~~~~  282 (399)
                      .+..+++++      +......|+..|..++. .-..-..+.+.. .+.|-.++  ....+.+++.|.++|+...+++|.
T Consensus        26 ~~r~ll~sg~~~~~~D~~~le~aLD~L~ElSH-Di~~G~KI~~~e-f~lL~nL~~~~~~~~~~rE~aarII~ssLRNNP~  103 (315)
T 3qml_C           26 EMRNIIDSNPTLSSQDIARLEDSFDRIMEFAH-DYKHGYKIITHE-FALLANLSLNENLPLTLRELSTRVITSCLRNNPP  103 (315)
T ss_dssp             HHHHHHHHCSSCCHHHHHHHHHHHHHHGGGTT-SHHHHHHHHHHH-HHHHHHHHHCTTSCHHHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHcCCCCCcccHHHHHHHHHHHHHhhh-hHHhhhHHHhCc-HHHHHHHHhhccCChhHHHHHHHHHHHHHccCHH
Confidence            345555555      34567888889999987 344444455422 34444433  345678999999999999999998


Q ss_pred             HHHHHHHC--CCcHHHHHhhcC-------CChHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHhhCCC--CHHHHH
Q 015851          283 IKKEVLAA--GALQPVIGLLSS-------CCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSP--DVQLRE  351 (399)
Q Consensus       283 ~~~~~~~~--~~l~~L~~lL~~-------~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~v~~L~~ll~~~--~~~v~~  351 (399)
                      ....+...  .++..+..-|..       ....+.+.-+.+|..|... +..   + ....+..|.+++...  ++.++.
T Consensus       104 Al~~V~~~~p~fv~~lf~~L~~~~~~~~~~~~~l~KR~LsII~~L~~~-~~~---F-~~~~m~~L~~ly~~~~~d~~~k~  178 (315)
T 3qml_C          104 VVEFINESFPNFKSKIMAALSNLNDSNHRSSNILIKRYLSILNELPVT-SED---L-PIYSTVVLQNVYERNNKDKQLQI  178 (315)
T ss_dssp             HHHHHHHHCTTHHHHHHHHHHHHHCC--CCCHHHHHHHHHHHHHSCCC-STT---C---CCHHHHHHHHHHTTTCHHHHH
T ss_pred             HHHHHHHhChhHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHhcC-hHh---h-hhccHHHHHHHHccCCCCHHHHH
Confidence            87777653  445555544432       2336667777888888754 321   1 234567777777655  899999


Q ss_pred             HHHHHHHHhhc
Q 015851          352 MSAFALGRLAQ  362 (399)
Q Consensus       352 ~a~~~L~~l~~  362 (399)
                      .+...+..+-.
T Consensus       179 Kvl~li~d~f~  189 (315)
T 3qml_C          179 KVLELISKILK  189 (315)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHcc
Confidence            88888877663

>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}

Probab=86.13  E-value=5.9  Score=41.99  Aligned_cols=226  Identities=11%  Similarity=0.031  Sum_probs=122.1

Q ss_pred             HHHHhhhhhcchhhhHHHHHHHHHHHHHHcCChhHHHHHHhCCChHHHHhcccCCCCcccccCCCcchHHHHHHHHHHHH
Q 015851           62 QVNVLNTTFSWLEADRAAAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALG  141 (399)
Q Consensus        62 ~~~~L~~~l~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~~~~~a~~~L~  141 (399)
                      +...+...++ ++.+...|..|-..|.++-.+|+         +...+...|.+...          ++.+|..|+.+|.
T Consensus        13 l~~~l~~~~~-p~~~~~~r~~Ae~~L~~~~~~p~---------~~~~~~~~L~~~s~----------~~~vR~~A~~~Lk   72 (1204)
T 3a6p_A           13 LVKAVTVMMD-PNSTQRYRLEALKFCEEFKEKCP---------ICVPCGLRLAEKTQ----------VAIVRHFGLQILE   72 (1204)
T ss_dssp             HHHHHHHHHC-TTCCHHHHHHHHHHHHHHHHHCT---------THHHHHHHHTSTTS----------CHHHHHHHHHHHH
T ss_pred             HHHHHHHHhC-CCCChHHHHHHHHHHHHHHhCch---------HHHHHHHHHHccCC----------CHHHHHHHHHHHH
Confidence            3444444432 22355678888888877655432         23333333332111          2378999999999


Q ss_pred             Hhc-C-----ChhhHHHHHhcCcHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHh
Q 015851          142 LLA-V-----KPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVEL  215 (399)
Q Consensus       142 ~l~-~-----~~~~~~~i~~~~~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~l  215 (399)
                      +.. .     .++.+..+.     ..++..+....... .+....++...+.++..++..+-.  .  .-.++++.++.+
T Consensus        73 ~~I~~~W~~l~~e~k~~Ir-----~~ll~~l~~~~~~~-~~~~~~vr~kla~~la~Ia~~d~p--~--~Wp~ll~~L~~~  142 (1204)
T 3a6p_A           73 HVVKFRWNGMSRLEKVYLK-----NSVMELIANGTLNI-LEEENHIKDALSRIVVEMIKREWP--Q--HWPDMLIELDTL  142 (1204)
T ss_dssp             HHHHHSGGGSCHHHHHHHH-----HHHHHHHHHSSCCT-TSSCHHHHHHHHHHHHHHHHHHST--T--TCTTHHHHHHHH
T ss_pred             HHHHHhcccCCHHHHHHHH-----HHHHHHHHhhcccc-ccccHHHHHHHHHHHHHHHHHhCc--c--cchHHHHHHHHH
Confidence            875 2     233333332     23444444321100 000017788888899888854211  0  124667888888


Q ss_pred             hcCCCHHHHHHHHHHHHHhhcC---C---hhhH-----HHHHhc--CCHHHHHHhhcC-------------------CCH
Q 015851          216 LEFTDTKVQRAAAGALRTLAFK---N---DENK-----NQIVEC--NALPTLILMLRS-------------------EDS  263 (399)
Q Consensus       216 l~~~~~~v~~~a~~~L~~L~~~---~---~~~~-----~~~~~~--~~~~~L~~ll~~-------------------~~~  263 (399)
                      +.+ ++.....++.+|..|+..   .   ...+     ..+.+.  .+++.+..++..                   .+.
T Consensus       143 ~~~-~~~~~e~~L~iL~~L~Eev~~~~~~~~~r~~~l~~~l~~~~~~I~~~~~~iL~~~~~~~~~~~~~~~~~~~~~~~~  221 (1204)
T 3a6p_A          143 SKQ-GETQTELVMFILLRLAEDVVTFQTLPPQRRRDIQQTLTQNMERIFSFLLNTLQENVNKYQQVKTDTSQESKAQANC  221 (1204)
T ss_dssp             HHT-CHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTTCSTTHHHHHHHH
T ss_pred             hcC-CHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchhhhhhhH
Confidence            866 566678888888888742   0   0111     112221  123333333432                   123


Q ss_pred             HHHHHHHHHHHHhhcCChhHHHHHHHCC--CcHHHHHhhcCCChHHHHHHHHHHHHhhccC
Q 015851          264 AIHYEAVGVIGNLVHSSPNIKKEVLAAG--ALQPVIGLLSSCCSESQREAALLLGQFAATD  322 (399)
Q Consensus       264 ~v~~~a~~~L~~l~~~~~~~~~~~~~~~--~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~  322 (399)
                      .+...++.++.+....-+.  ..+.+..  .++.+..++.  ++.++..|+.+|..+....
T Consensus       222 ~l~~~aL~~l~~~l~Wi~~--~~i~~~~~~ll~~l~~~l~--~~~lr~~A~ecL~~i~s~~  278 (1204)
T 3a6p_A          222 RVGVAALNTLAGYIDWVSM--SHITAENCKLLEILCLLLN--EQELQLGAAECLLIAVSRK  278 (1204)
T ss_dssp             HHHHHHHHHHHTTTTTSCH--HHHHTTTSHHHHHHHHGGG--CTTTHHHHHHHHHHHHTCC
T ss_pred             HHHHHHHHHHHHHHhccCH--HHHHhccchHHHHHHHHcC--CHHHHHHHHHHHHHHHhCC
Confidence            4666777777765543222  2333332  6677776665  4578899999999998653

>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}

Probab=86.10  E-value=22  Score=37.58  Aligned_cols=261  Identities=13%  Similarity=0.078  Sum_probs=140.3

Q ss_pred             hhhhHHHHHHHHHHHHHHcC------ChhHHHHHHhCCChHHHHhcccCCCCcccccCCCcchHHHHHHHHHHHHHhc--
Q 015851           73 LEADRAAAKRATHVLAELAK------NEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA--  144 (399)
Q Consensus        73 ~~~~~~~~~~a~~~L~~l~~------~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~~~~~a~~~L~~l~--  144 (399)
                      .+.+..+|..|+..|.+...      +++.+.. +...++..+.+.-.....         ..+.++...+.++..++  
T Consensus        57 ~s~~~~vR~~A~~~Lk~~I~~~W~~l~~e~k~~-Ir~~ll~~l~~~~~~~~~---------~~~~vr~kla~~la~Ia~~  126 (1204)
T 3a6p_A           57 KTQVAIVRHFGLQILEHVVKFRWNGMSRLEKVY-LKNSVMELIANGTLNILE---------EENHIKDALSRIVVEMIKR  126 (1204)
T ss_dssp             TTSCHHHHHHHHHHHHHHHHHSGGGSCHHHHHH-HHHHHHHHHHHSSCCTTS---------SCHHHHHHHHHHHHHHHHH
T ss_pred             cCCCHHHHHHHHHHHHHHHHHhcccCCHHHHHH-HHHHHHHHHHhhcccccc---------ccHHHHHHHHHHHHHHHHH
Confidence            34567889999999988753      2333333 333445544433211100         01378889999999988  


Q ss_pred             CChhhHHHHHhcCcHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhhc---C---chhH-----HHHHhc--CChHH
Q 015851          145 VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHE---N---SSIK-----TRVRME--GGIPP  211 (399)
Q Consensus       145 ~~~~~~~~i~~~~~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~---~---~~~~-----~~~~~~--~~i~~  211 (399)
                      ..|+.     -.+.++.+++++... .        ...+.++.+|..++.+   .   ...+     ..+...  .+++.
T Consensus       127 d~p~~-----Wp~ll~~L~~~~~~~-~--------~~~e~~L~iL~~L~Eev~~~~~~~~~r~~~l~~~l~~~~~~I~~~  192 (1204)
T 3a6p_A          127 EWPQH-----WPDMLIELDTLSKQG-E--------TQTELVMFILLRLAEDVVTFQTLPPQRRRDIQQTLTQNMERIFSF  192 (1204)
T ss_dssp             HSTTT-----CTTHHHHHHHHHHTC-H--------HHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHTHHHHHHH
T ss_pred             hCccc-----chHHHHHHHHHhcCC-H--------HHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHHHHHHHHHHH
Confidence            33422     246788888888652 1        4466678888888742   0   1111     111111  12223


Q ss_pred             HHHhhcC-------------------CCHHHHHHHHHHHHHhhcCChhhHHHHHhcC--CHHHHHHhhcCCCHHHHHHHH
Q 015851          212 LVELLEF-------------------TDTKVQRAAAGALRTLAFKNDENKNQIVECN--ALPTLILMLRSEDSAIHYEAV  270 (399)
Q Consensus       212 L~~ll~~-------------------~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~--~~~~L~~ll~~~~~~v~~~a~  270 (399)
                      +..++.+                   .+..+...++.++.+....-+  ...+.+..  .++.+..++.  +++++..|+
T Consensus       193 ~~~iL~~~~~~~~~~~~~~~~~~~~~~~~~l~~~aL~~l~~~l~Wi~--~~~i~~~~~~ll~~l~~~l~--~~~lr~~A~  268 (1204)
T 3a6p_A          193 LLNTLQENVNKYQQVKTDTSQESKAQANCRVGVAALNTLAGYIDWVS--MSHITAENCKLLEILCLLLN--EQELQLGAA  268 (1204)
T ss_dssp             HHHHHHHHHHHHHHHTTCSTTHHHHHHHHHHHHHHHHHHHTTTTTSC--HHHHHTTTSHHHHHHHHGGG--CTTTHHHHH
T ss_pred             HHHHHHHHHHHHhcccccccchhhhhhhHHHHHHHHHHHHHHHhccC--HHHHHhccchHHHHHHHHcC--CHHHHHHHH
Confidence            3333322                   123466777777776554222  22333332  6666666655  478899999


Q ss_pred             HHHHHhhcCC--hhHHHHHHHC---CCcHHHHHhhc--------CCChHHHHHHHHHHHHhhccChhhHHHHH-------
Q 015851          271 GVIGNLVHSS--PNIKKEVLAA---GALQPVIGLLS--------SCCSESQREAALLLGQFAATDSDCKVHIV-------  330 (399)
Q Consensus       271 ~~L~~l~~~~--~~~~~~~~~~---~~l~~L~~lL~--------~~~~~v~~~a~~~L~~l~~~~~~~~~~l~-------  330 (399)
                      .+|..++...  +..+..++..   ..+..++..+.        ..+.++.+..+..+..+..   .....+.       
T Consensus       269 ecL~~i~s~~~~~~~~~~li~~l~~~~l~~l~~~~~~~~~~~~~e~d~e~~k~l~~ll~~lg~---~l~~l~~~~~~~~~  345 (1204)
T 3a6p_A          269 ECLLIAVSRKGKLEDRKPLMVLFGDVAMHYILSAAQTADGGGLVEKHYVFLKRLCQVLCALGN---QLCALLGADSDVET  345 (1204)
T ss_dssp             HHHHHHHTCCSCHHHHGGGGGGGSHHHHHHHHHHHHTCCCCSCCHHHHHHHHHHHHHHHHHHH---HHHHHHHTCSSCCC
T ss_pred             HHHHHHHhCCCChhhHHHHHHHHhhHHHHHHHHHhhcCCCCCCccHHHHHHHHHHHHHHHHHH---HHHHHHhccccccC
Confidence            9999998533  2222222210   11234444432        1123556666666666652   1111111       


Q ss_pred             ---hcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhccC
Q 015851          331 ---QRGAVRPLIEMLQSPDVQLREMSAFALGRLAQVI  364 (399)
Q Consensus       331 ---~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~  364 (399)
                         -.++++.++.+..+++..+...+...-..+.++.
T Consensus       346 ~~~l~~~l~~lL~~t~~~~~~vs~~~l~fW~~ll~~~  382 (1204)
T 3a6p_A          346 PSNFGKYLESFLAFTTHPSQFLRSSTQMTWGALFRHE  382 (1204)
T ss_dssp             CTTHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHSCT
T ss_pred             hhHHHHHHHHHHHHHhCccHHhHHHHHHHHHHHHhcc
Confidence               0245777888887888888777776666566553

>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*

Probab=83.18  E-value=26  Score=31.59  Aligned_cols=153  Identities=12%  Similarity=0.110  Sum_probs=103.6

Q ss_pred             cCChHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHH
Q 015851          206 EGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKK  285 (399)
Q Consensus       206 ~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~  285 (399)
                      .++++.++.+-.+.+.++|...+..|...+....+..     ...++.|..++.++++.+.+.++.+.+++-   +...+
T Consensus        62 ~~fl~~il~f~~d~~~~vRk~~a~FieEa~~~~~el~-----~~~l~~L~~LL~d~d~~V~K~~I~~~tslY---pl~f~  133 (386)
T 3o2t_A           62 DNFLDEIIAFQADKSIEVRKFVIGFIEEACKRDIELL-----LKLIANLNMLLRDENVNVVKKAILTMTQLY---KVALQ  133 (386)
T ss_dssp             GGGHHHHHGGGGCSCHHHHHHHHHHHHHHHHHCGGGH-----HHHHHHHHHHHTCSSHHHHHHHHHHHHHHH---HHHHH
T ss_pred             HHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHcCCCHHHHHHHHHHHHHHH---HHHHH
Confidence            5778889999888899999999999988886433332     234667888888889999998888887773   22223


Q ss_pred             HHHHCCC---------------cHHHHHhhcCCChHHHHHHHHHHHHhhc----cChh----------------------
Q 015851          286 EVLAAGA---------------LQPVIGLLSSCCSESQREAALLLGQFAA----TDSD----------------------  324 (399)
Q Consensus       286 ~~~~~~~---------------l~~L~~lL~~~~~~v~~~a~~~L~~l~~----~~~~----------------------  324 (399)
                      .+...+.               -..++.++.+.+..++..+...+..+.-    ...+                      
T Consensus       134 ~i~~~~~~~~~~e~~W~~m~~lK~~Il~~~ds~n~GVrl~aiKFle~VIl~qS~~~~d~~~p~~~~~d~SL~~VP~nHp~  213 (386)
T 3o2t_A          134 WMVKSRVISELQEACWDMVSAMAGDIILLLDSDNDGIRTHAIKFVEGLIVTLSPRMADSEIPRRQEHDISLDRIPRDHPY  213 (386)
T ss_dssp             HHHHC-CCCHHHHHHHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHTSCCCTTCCCCGGGTTSCCGGGSCTTCSS
T ss_pred             HHhcCCCcchhHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHhCCCCCCcccccccCCCCCHhhCCCCCCc
Confidence            3333322               2345566677888999999887776541    1101                      


Q ss_pred             -hHHHHHh--cCCHHHHHHhhCC--CCHHHHHHHHHHHHHhhccCCC
Q 015851          325 -CKVHIVQ--RGAVRPLIEMLQS--PDVQLREMSAFALGRLAQVITV  366 (399)
Q Consensus       325 -~~~~l~~--~g~v~~L~~ll~~--~~~~v~~~a~~~L~~l~~~~~~  366 (399)
                       ....+..  .+.+..|++.+.+  .++-....+..+|..|++.-|.
T Consensus       214 L~~~~Le~EA~~lLd~LL~~l~~~~iss~~l~a~lnsLa~Iak~RP~  260 (386)
T 3o2t_A          214 IQYNVLWEEGKAALEQLLKFMVHPAISSINLTTALGSLANIARQRPM  260 (386)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHTTC--CCHHHHHHHHHHHHHHHHHSGG
T ss_pred             CCHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHhcHH
Confidence             0112221  4677888888875  3455667788999999988875

>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*

Probab=80.60  E-value=22  Score=32.01  Aligned_cols=129  Identities=12%  Similarity=0.103  Sum_probs=84.4

Q ss_pred             HHHHHHHHHHHhhcC-ChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHHCCCcHHHHHhhc
Q 015851          223 VQRAAAGALRTLAFK-NDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLS  301 (399)
Q Consensus       223 v~~~a~~~L~~L~~~-~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~  301 (399)
                      .+...+.-+..|..+ ++.     .-..+++.++.+-.+.+.++|...+..|...+....+...     .+++.|..+|.
T Consensus        41 ~Kl~~L~q~~EL~l~~dps-----Ll~~fl~~il~f~~d~~~~vRk~~a~FieEa~~~~~el~~-----~~l~~L~~LL~  110 (386)
T 3o2t_A           41 SKITVLKQVQELIINKDPT-----LLDNFLDEIIAFQADKSIEVRKFVIGFIEEACKRDIELLL-----KLIANLNMLLR  110 (386)
T ss_dssp             HHHHHHHHHHHHHHTTCGG-----GGGGGHHHHHGGGGCSCHHHHHHHHHHHHHHHHHCGGGHH-----HHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHhccCHH-----HHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHc
Confidence            344555555555442 221     2235788888888888999999999999988865444422     35778888888


Q ss_pred             CCChHHHHHHHHHHHHhhc-------cCh---hhHHHHHh--cCCHHHHHHhhCCCCHHHHHHHHHHHHHhh
Q 015851          302 SCCSESQREAALLLGQFAA-------TDS---DCKVHIVQ--RGAVRPLIEMLQSPDVQLREMSAFALGRLA  361 (399)
Q Consensus       302 ~~~~~v~~~a~~~L~~l~~-------~~~---~~~~~l~~--~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~  361 (399)
                      +.++.+.+.+..+.+++-.       .++   +.....++  ..+-..++.++.+.+..++-.+.+.+-.+.
T Consensus       111 d~d~~V~K~~I~~~tslYpl~f~~i~~~~~~~~~~e~~W~~m~~lK~~Il~~~ds~n~GVrl~aiKFle~VI  182 (386)
T 3o2t_A          111 DENVNVVKKAILTMTQLYKVALQWMVKSRVISELQEACWDMVSAMAGDIILLLDSDNDGIRTHAIKFVEGLI  182 (386)
T ss_dssp             CSSHHHHHHHHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHH
Confidence            8888888887776665520       011   11223332  223456777778889999999998887655

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	399
d1jdha_	529	a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens)	2e-20
d1jdha_	529	a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens)	6e-17
d1jdha_	529	a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens)	2e-15
d1jdha_	529	a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens)	1e-08
d1jdha_	529	a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens)	1e-06
d1jdha_	529	a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens)	1e-06
d1jdha_	529	a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens)	7e-06
d1xm9a1	457	a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo	4e-20
d1xm9a1	457	a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo	1e-17
d1xm9a1	457	a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo	6e-14
d1xm9a1	457	a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo	1e-13
d1xm9a1	457	a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo	4e-11
d1q1sc_	434	a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus	1e-15
d1q1sc_	434	a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus	2e-15
d1q1sc_	434	a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus	2e-13
d1q1sc_	434	a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus	3e-13
d1q1sc_	434	a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus	2e-04
d1xqra1	264	a.118.1.21 (A:87-350) Hsp70-binding protein 1 (Hsp	6e-15
d1xqra1	264	a.118.1.21 (A:87-350) Hsp70-binding protein 1 (Hsp	1e-05
d1xqra1	264	a.118.1.21 (A:87-350) Hsp70-binding protein 1 (Hsp	3e-05
d1wa5b_	503	a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (S	1e-14
d1wa5b_	503	a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (S	2e-12
d1qbkb_	888	a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapi	6e-07
d1qbkb_	888	a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapi	0.001
d1u6gc_	1207	a.118.1.2 (C:) Cullin-associated NEDD8-dissociated	4e-06
d1lrva_	233	a.118.1.5 (A:) Leucine-rich repeat variant {Azotob	3e-04
d1b3ua_	588	a.118.1.2 (A:) Constant regulatory domain of prote	5e-04
d1b3ua_	588	a.118.1.2 (A:) Constant regulatory domain of prote	8e-04
d1ibrb_	458	a.118.1.1 (B:) Importin beta {Human (Homo sapiens)	6e-04

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 90.7 bits (223), Expect = 2e-20
 Identities = 42/206 (20%), Positives = 85/206 (41%), Gaps = 10/206 (4%)

Query: 156 NGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVEL 215
             A+  L  LL              V+ +AA  +  L+ + +S    +R    +  +V  
Sbjct: 16  TRAIPELTKLLNDE--------DQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRT 67

Query: 216 LEFT-DTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIG 274
           ++ T D +  R  AG L  L+  + E    I +   +P L+ ML S   ++ + A+  + 
Sbjct: 68  MQNTNDVETARCTAGTLHNLS-HHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLH 126

Query: 275 NLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGA 334
           NL+      K  V  AG LQ ++ LL+    +        L   A  + + K+ I+  G 
Sbjct: 127 NLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGG 186

Query: 335 VRPLIEMLQSPDVQLREMSAFALGRL 360
            + L+ ++++   +    +   + ++
Sbjct: 187 PQALVNIMRTYTYEKLLWTTSRVLKV 212

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 80.3 bits (196), Expect = 6e-17
 Identities = 47/213 (22%), Positives = 72/213 (33%), Gaps = 30/213 (14%)

Query: 149 HQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGG 208
            Q  +  +  L  +V LL               I+     I NLA   +     +R +G 
Sbjct: 347 AQNAVRLHYGLPVVVKLLHPPSHWPL-------IKATVGLIRNLALCPA-NHAPLREQGA 398

Query: 209 IPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYE 268
           IP LV+LL       QR  +       F       +IVE                     
Sbjct: 399 IPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEG-------------------- 438

Query: 269 AVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVH 328
             G +  L     + +  +     +   + LL S     QR AA +L + A  D +    
Sbjct: 439 CTGALHILA-RDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELA-QDKEAAEA 496

Query: 329 IVQRGAVRPLIEMLQSPDVQLREMSAFALGRLA 361
           I   GA  PL E+L S +  +   +A  L R++
Sbjct: 497 IEAEGATAPLTELLHSRNEGVATYAAAVLFRMS 529

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 75.3 bits (183), Expect = 2e-15
 Identities = 52/280 (18%), Positives = 99/280 (35%), Gaps = 21/280 (7%)

Query: 104 GAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIVDN-GALSHL 162
            A+P L K L               +  V   +A  +  L+ K   +  I+ +   +S +
Sbjct: 17  RAIPELTKLLNDE------------DQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAI 64

Query: 163 VNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTK 222
           V  ++   D           R  A  + NL+H +      +   GGIP LV++L      
Sbjct: 65  VRTMQNTNDVE-------TARCTAGTLHNLSH-HREGLLAIFKSGGIPALVKMLGSPVDS 116

Query: 223 VQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPN 282
           V   A   L  L    +  K  +     L  ++ +L   +          +  L + +  
Sbjct: 117 VLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQE 176

Query: 283 IKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEML 342
            K  +LA+G  Q ++ ++ +   E        + +  +  S  K  IV+ G ++ L   L
Sbjct: 177 SKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHL 236

Query: 343 QSPDVQLREMSAFALGRLAQVITVSVLPAILIFIIINECQ 382
             P  +L +   + L  L+   T       L+  ++    
Sbjct: 237 TDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLG 276

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.5 bits (129), Expect = 1e-08
 Identities = 37/236 (15%), Positives = 69/236 (29%), Gaps = 24/236 (10%)

Query: 127 PFEHEVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAA 186
              + V   +     L     +++ ++   G +  LV  + R         +      A 
Sbjct: 278 DDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRA---GDREDITEPAICAL 334

Query: 187 DAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIV 246
             +T+   E    +  VR+  G+P +V+LL          A   L         N   + 
Sbjct: 335 RHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLR 394

Query: 247 ECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSE 306
           E  A+P L+ +L                                         +     E
Sbjct: 395 EQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQ---------------------FVEGVRME 433

Query: 307 SQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQ 362
              E         A D   ++ I     +   +++L SP   ++ ++A  L  LAQ
Sbjct: 434 EIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQ 489

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.0 bits (112), Expect = 1e-06
 Identities = 15/76 (19%), Positives = 33/76 (43%), Gaps = 1/76 (1%)

Query: 288 LAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSP-D 346
           LA  A+  +  LL+        +AA+++ Q +  ++     +     V  ++  +Q+  D
Sbjct: 14  LATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTND 73

Query: 347 VQLREMSAFALGRLAQ 362
           V+    +A  L  L+ 
Sbjct: 74  VETARCTAGTLHNLSH 89

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.0 bits (112), Expect = 1e-06
 Identities = 65/323 (20%), Positives = 109/323 (33%), Gaps = 32/323 (9%)

Query: 27  IGDEQQQMQQREISSSSAGTSSSDARQALLSE---VSAQVNVLNTTFSWLEADRAAAKRA 83
           + DE Q +  +        +    +R A++     VSA V  +         D   A+  
Sbjct: 26  LNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQN-----TNDVETARCT 80

Query: 84  THVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLL 143
              L  L+ + E +  I + G +PALVK L +P               V   +   L  L
Sbjct: 81  AGTLHNLSHHREGLLAIFKSGGIPALVKMLGSP------------VDSVLFYAITTLHNL 128

Query: 144 AVKPE-HQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTR 202
            +  E  +  +   G L  +V LL +             +    D +  LA+ N   K  
Sbjct: 129 LLHQEGAKMAVRLAGGLQKMVALLNKTNV--------KFLAITTDCLQILAYGNQESKLI 180

Query: 203 VRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSED 262
           +   GG   LV ++     +        +  +      NK  IVE   +  L L L    
Sbjct: 181 ILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPS 240

Query: 263 SAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATD 322
             +    +  + NL   S    K+    G L  ++ LL S        AA +L      +
Sbjct: 241 QRLVQNCLWTLRNL---SDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNN 297

Query: 323 SDCKVHIVQRGAVRPLIEMLQSP 345
              K+ + Q G +  L+  +   
Sbjct: 298 YKNKMMVCQVGGIEALVRTVLRA 320

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.7 bits (106), Expect = 7e-06
 Identities = 24/115 (20%), Positives = 39/115 (33%), Gaps = 20/115 (17%)

Query: 79  AAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAF 138
             +  T  L  LA++      I     +P  V+ L +P               +++ +A 
Sbjct: 435 IVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSP------------IENIQRVAAG 482

Query: 139 ALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLA 193
            L  LA   E  + I   GA + L  LL      N       V   AA  +  ++
Sbjct: 483 VLCELAQDKEAAEAIEAEGATAPLTELLH---SRN-----EGVATYAAAVLFRMS 529

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 89.5 bits (220), Expect = 4e-20
 Identities = 31/172 (18%), Positives = 65/172 (37%), Gaps = 1/172 (0%)

Query: 209 IPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYE 268
           IP  V+ L   D K Q   A  ++   F+++  K Q+ +   +  L+ +LRS +  +   
Sbjct: 4   IPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQA 63

Query: 269 AVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVH 328
           A G + NLV  S   K E      ++  + LL    +   ++    L    ++  + K  
Sbjct: 64  AAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEE 123

Query: 329 IVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQVITVSVLPAILIFIIINE 380
           ++   A+  L + +  P     + ++     +            L  +   +
Sbjct: 124 LI-ADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSAD 174

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 82.2 bits (201), Expect = 1e-17
 Identities = 41/222 (18%), Positives = 79/222 (35%), Gaps = 15/222 (6%)

Query: 180 SVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKND 239
                 A  I +   ++ S K +V   GGI  LV+LL   +  VQ+AAAGALR L F++ 
Sbjct: 17  KYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRST 76

Query: 240 ENKNQIVECNALPTLI-LMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEV----------- 287
            NK +    N +   + L+ R+ ++ I  +  G++ NL  +    ++ +           
Sbjct: 77  TNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELIADALPVLADRV 136

Query: 288 ---LAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQS 344
               +                E    A   L   ++ D+  +      G +  L+  +Q+
Sbjct: 137 IIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQN 196

Query: 345 PDVQLREMSAFALGRLAQVITVSVLPAILIFIIINECQLEVL 386
                R         +  +  +S      +     + +    
Sbjct: 197 CVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNAR 238

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 70.6 bits (171), Expect = 6e-14
 Identities = 40/283 (14%), Positives = 88/283 (31%), Gaps = 12/283 (4%)

Query: 39  ISSSSAGTSSSDARQALLSEVSAQVNVLNTTFSWLEADRAAAKRATHVLAELAKNEEVVN 98
           + + S+  +     +     + + +  +    +    D  + +    VL  L+   +   
Sbjct: 167 LRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEV 226

Query: 99  WIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIVDNGA 158
                              ++    N    +  +       L      P+    +  + A
Sbjct: 227 PTRYRQLEYNARNAYTEKSSTGCFSNKS--DKMMNNNYDCPLPEEETNPKGSGWLYHSDA 284

Query: 159 LSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEF 218
           +   +NL+        +              +     +   +     E G+P +  LL+ 
Sbjct: 285 IRTYLNLM--GKSKKDATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQS 342

Query: 219 TDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSA------IHYEAVGV 272
            ++ V R+ A  L  ++ ++      +      P +  +L S          I   A   
Sbjct: 343 GNSDVVRSGASLLSNMS-RHPLLHRVMGN-QVFPEVTRLLTSHTGNTSNSEDILSSACYT 400

Query: 273 IGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLL 315
           + NL+ S P + K+  ++  L  +I L  S  S    EAA LL
Sbjct: 401 VRNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAEAARLL 443

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 69.9 bits (169), Expect = 1e-13
 Identities = 33/301 (10%), Positives = 78/301 (25%), Gaps = 21/301 (6%)

Query: 76  DRAAAKRATHVLAELAKNEEVVNWIVEG-GAVPALVKHLQAPPTSEADRNLKPFEHEVEK 134
           D      AT  L  L+  +     +    G + +L+ ++Q           +  +  VE 
Sbjct: 156 DPEVFFNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQ-----NCVAASRCDDKSVEN 210

Query: 135 GSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAH 194
                  L                 +      ++      S   + ++    D       
Sbjct: 211 CMCVLHNLSYRLDAEVPTRYRQLEYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEE 270

Query: 195 ENSSIKTRVRMEGGIPPLVELLEFTDTKVQRA------AAGALRTLAFKNDENKNQIVEC 248
            N      +     I   + L+  +                        +  ++   ++ 
Sbjct: 271 TNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSGMSQLIGLKE 330

Query: 249 NALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCS--- 305
             LP +  +L+S +S +      ++ N+          V+       V  LL+S      
Sbjct: 331 KGLPQIARLLQSGNSDVVRSGASLLSNMSRHPLL--HRVMGNQVFPEVTRLLTSHTGNTS 388

Query: 306 ---ESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPD-VQLREMSAFALGRLA 361
              +    A   +    A+             +  +I + +S    +  E +   L  + 
Sbjct: 389 NSEDILSSACYTVRNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDMW 448

Query: 362 Q 362
            
Sbjct: 449 S 449

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.2 bits (149), Expect = 4e-11
 Identities = 37/327 (11%), Positives = 95/327 (29%), Gaps = 35/327 (10%)

Query: 83  ATHVLAELAK-NEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALG 141
             + +      +E     + + G +  LV  L++P               V++ +A AL 
Sbjct: 22  GAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSP------------NQNVQQAAAGALR 69

Query: 142 LLAVK-PEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIK 200
            L  +   ++        +   V+LL+R  ++   + +  ++   +          +   
Sbjct: 70  NLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELIADAL 129

Query: 201 TRVRMEGGIP-------PLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPT 253
             +     IP             E  D +V   A G LR L+  +   +        + +
Sbjct: 130 PVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQTMRNYSGLIDS 189

Query: 254 LILMLRSEDSA--------------IHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGL 299
           L+  +++  +A              +H  +  +   +      ++     A   +   G 
Sbjct: 190 LMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYTEKSSTGC 249

Query: 300 LSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGR 359
            S+   +              T+      +    A+R  + ++          +     +
Sbjct: 250 FSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQ 309

Query: 360 LAQVITVSVLPAILIFIIINECQLEVL 386
                   +   +   I + E  L  +
Sbjct: 310 NLTASKGLMSSGMSQLIGLKEKGLPQI 336

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 434

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 76.0 bits (185), Expect = 1e-15
 Identities = 32/152 (21%), Positives = 67/152 (44%), Gaps = 2/152 (1%)

Query: 205 MEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENK-NQIVECNALPTLI-LMLRSED 262
           +   +  +V+ +   + + Q  A  A R L  +  +   + I+    +P  +  + +++ 
Sbjct: 11  VNWSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDC 70

Query: 263 SAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATD 322
           S I +E+   + N+   +    K V+  GA+   I LL+S  +    +A   LG  A   
Sbjct: 71  SPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDG 130

Query: 323 SDCKVHIVQRGAVRPLIEMLQSPDVQLREMSA 354
           S  +  +++ GA+ PL+ +L  PD+       
Sbjct: 131 SAFRDLVIKHGAIDPLLALLAVPDLSTLACGY 162

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 434

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 74.8 bits (182), Expect = 2e-15
 Identities = 44/198 (22%), Positives = 72/198 (36%), Gaps = 15/198 (7%)

Query: 156 NGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLA-HENSSIKTRVRMEGGIPPLVE 214
           N ++  +V  +     SN          +A  A   L   E       +   G IP  V 
Sbjct: 12  NWSVEDIVKGIN----SNNL----ESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVS 63

Query: 215 LLEFTD-TKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVI 273
            L  TD + +Q  +A AL  +A    E    +V+  A+P  I +L S  + I  +AV  +
Sbjct: 64  FLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWAL 123

Query: 274 GNLVHSSPNIKKEVLAAGALQPVIGLL-----SSCCSESQREAALLLGQFAATDSDCKVH 328
           GN+       +  V+  GA+ P++ LL     S+      R     L       +     
Sbjct: 124 GNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPL 183

Query: 329 IVQRGAVRPLIEMLQSPD 346
                 +  L+ +L   D
Sbjct: 184 DAVEQILPTLVRLLHHND 201

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 434

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 69.4 bits (168), Expect = 2e-13
 Identities = 60/348 (17%), Positives = 128/348 (36%), Gaps = 58/348 (16%)

Query: 83  ATHVLAELAK-NEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALG 141
           +   L  +A    E    +V+GGA+PA +  L +P    +++ +    +           
Sbjct: 77  SAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGN----------- 125

Query: 142 LLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKT 201
           +       + L++ +GA+  L+ LL     S  +      +R     ++NL    +    
Sbjct: 126 IAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLA---CGYLRNLTWTLSNLCRNKNPAPP 182

Query: 202 RVRMEGGIPPLVELLEFTDT---------------------------------------- 221
              +E  +P LV LL   D                                         
Sbjct: 183 LDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGAT 242

Query: 222 --KVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHS 279
              +   A  A+  +    DE   ++++  AL     +L +  + I  EA   + N+   
Sbjct: 243 ELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAG 302

Query: 280 SPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAA-TDSDCKVHIVQRGAVRPL 338
             +  ++V+  G +  ++G+LS    ++Q+EAA  +  + +    +  V++V  G + PL
Sbjct: 303 RQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPL 362

Query: 339 IEMLQSPDVQLREMSAFALGRLAQVITVSVLPAILIFIIINECQLEVL 386
           + +L + D ++ ++   A+  + Q          L  +I     L+ +
Sbjct: 363 MNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKI 410

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 434

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 68.7 bits (166), Expect = 3e-13
 Identities = 49/283 (17%), Positives = 102/283 (36%), Gaps = 31/283 (10%)

Query: 87  LAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVK 146
           +A++  N+  VNW     +V  +VK + +               E +  +  A   L  +
Sbjct: 1   MADIGSNQGTVNW-----SVEDIVKGINSN------------NLESQLQATQAARKLLSR 43

Query: 147 PEHQ--QLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVR 204
            +      I+  G +   V+ L +   S        +   +A A+TN+A   S     V 
Sbjct: 44  EKQPPIDNIIRAGLIPKFVSFLGKTDCSP-------IQFESAWALTNIASGTSEQTKAVV 96

Query: 205 MEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSED-- 262
             G IP  + LL      +   A  AL  +A      ++ +++  A+  L+ +L   D  
Sbjct: 97  DGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLS 156

Query: 263 ---SAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFA 319
                        + NL  +             L  ++ LL     E   ++   +    
Sbjct: 157 TLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLT 216

Query: 320 ATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQ 362
              ++    +V++G V  L+++L + ++ +   +  A+G +  
Sbjct: 217 DGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVT 259

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 434

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 40.9 bits (94), Expect = 2e-04
 Identities = 22/114 (19%), Positives = 44/114 (38%), Gaps = 16/114 (14%)

Query: 128 FEHEVEKGSAFALGLLAVK--PEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRA 185
            + + +K +A+A+         E    +V  G +  L+NLL    D+        +I+  
Sbjct: 326 ADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLS-AKDTK-------IIQVI 377

Query: 186 ADAITNLA------HENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRT 233
            DAI+N+        E   +   +   GG+  +  L    +  V +A+   +  
Sbjct: 378 LDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEK 431

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 264

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HspBP1 domain
domain: Hsp70-binding protein 1 (HspBP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 72.0 bits (175), Expect = 6e-15
 Identities = 36/204 (17%), Positives = 71/204 (34%), Gaps = 7/204 (3%)

Query: 165 LLKRHMDSNCSRAVNS----VIRRAADAITNLAHENSSIKTRVRMEGGIPPLVE-LLEFT 219
           +L + M      A  +        A + + +L  EN           G+  LV   LE  
Sbjct: 13  VLSQPMPPTAGEAEQAADQQEREGALELLADLC-ENMDNAADFCQLSGMHLLVGRYLEAG 71

Query: 220 DTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRS-EDSAIHYEAVGVIGNLVH 278
              ++  AA  + T +      + Q++   AL  L+ +L       +  +A+  I  LV 
Sbjct: 72  AAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVR 131

Query: 279 SSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPL 338
                  + L       ++  +     + + ++A LL        + K  +   G V+ L
Sbjct: 132 EQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQL 191

Query: 339 IEMLQSPDVQLREMSAFALGRLAQ 362
           + ++++      E    AL  L  
Sbjct: 192 VALVRTEHSPFHEHVLGALCSLVT 215

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 264

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HspBP1 domain
domain: Hsp70-binding protein 1 (HspBP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.3 bits (103), Expect = 1e-05
 Identities = 35/223 (15%), Positives = 66/223 (29%), Gaps = 30/223 (13%)

Query: 74  EADRAAAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSE----ADRNLKPFE 129
            AD+   + A  +LA+L +N +      +   +  LV        +     A + +    
Sbjct: 28  AADQQEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCS 87

Query: 130 HEVEKGSAFALGLLAVKPEHQQLIVDN------GALSHLVNLLKRHMDSNCSRAVNSVI- 182
             V       LGL A++   + L  D        AL  +  L++                
Sbjct: 88  QNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFS 147

Query: 183 --------------RRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAA 228
                          ++A  + NL   +   K  +   G +  LV L+    +       
Sbjct: 148 VLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVALVRTEHSPFHEHVL 207

Query: 229 GALRTLAFKNDENKNQIVEC-----NALPTLILMLRSEDSAIH 266
           GAL +L     +   +  E        L     +L+  +    
Sbjct: 208 GALCSLVTDFPQGVRECREPELGLEELLRHRCQLLQQHEEYQE 250

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 264

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HspBP1 domain
domain: Hsp70-binding protein 1 (HspBP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.7 bits (99), Expect = 3e-05
 Identities = 21/121 (17%), Positives = 51/121 (42%), Gaps = 3/121 (2%)

Query: 244 QIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIG-LLSS 302
           +++     PT     ++ D      A+ ++ +L  +  N   +      +  ++G  L +
Sbjct: 12  RVLSQPMPPTAGEAEQAADQQEREGALELLADLCENMDN-AADFCQLSGMHLLVGRYLEA 70

Query: 303 CCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQS-PDVQLREMSAFALGRLA 361
             +  +  AA L+G  +   +  +  ++  GA+R L+ +L       +R  + FA+  L 
Sbjct: 71  GAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLV 130

Query: 362 Q 362
           +
Sbjct: 131 R 131

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 503

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin alpha
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 72.8 bits (177), Expect = 1e-14
 Identities = 37/201 (18%), Positives = 80/201 (39%), Gaps = 9/201 (4%)

Query: 164 NLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKV 223
            L KR       R        A     + +  ++  +   +++  +P + + L   D + 
Sbjct: 40  ALAKR-------RNFIPPTDGADSDEEDESSVSADQQFYSQLQQELPQMTQQLNSDDMQE 92

Query: 224 QRAAAGALRTLAFKNDENKNQ-IVECNALPTLI-LMLRSEDSAIHYEAVGVIGNLVHSSP 281
           Q +A    R +  +        +++   +P L+  M  ++   +  EA   + N+   + 
Sbjct: 93  QLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTS 152

Query: 282 NIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEM 341
              K V+ A A+   I LL +   E + +A   LG  A   +D + +++Q  A+ P++ +
Sbjct: 153 AQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGL 212

Query: 342 LQSPDVQLREMSAFALGRLAQ 362
             S    L   + + L  L +
Sbjct: 213 FNSNKPSLIRTATWTLSNLCR 233

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 503

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin alpha
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 65.9 bits (159), Expect = 2e-12
 Identities = 59/329 (17%), Positives = 113/329 (34%), Gaps = 65/329 (19%)

Query: 81  KRATHVLAELAKNEEVVNW-IVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFA 139
             A   L  +A         +V+  AVP  ++ L                 EV++ + +A
Sbjct: 138 LEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTG------------SVEVKEQAIWA 185

Query: 140 LGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSI 199
           LG +A      +  V        +  L             S+IR A   ++NL       
Sbjct: 186 LGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKP-------SLIRTATWTLSNLCRGKKPQ 238

Query: 200 KTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDEN------------------ 241
                +   +P L +L+   DT+    A  A+  L+    E                   
Sbjct: 239 PDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLS 298

Query: 242 ------------------------KNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLV 277
                                      ++    LP L L+L S    I  EA   I N+ 
Sbjct: 299 HESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNIT 358

Query: 278 HSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAAT---DSDCKVHIVQRGA 334
             +    + V+ A  + P++ LL     ++++EA   +   ++      D   ++V +G 
Sbjct: 359 AGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGC 418

Query: 335 VRPLIEMLQSPDVQLREMSAFALGRLAQV 363
           ++PL ++L+  D ++ E++  AL  + ++
Sbjct: 419 IKPLCDLLEIADNRIIEVTLDALENILKM 447

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} Length = 888

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin beta2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.3 bits (116), Expect = 6e-07
 Identities = 31/169 (18%), Positives = 62/169 (36%), Gaps = 7/169 (4%)

Query: 212 LVELLEFTDTKVQRAAAGALRTLAFKNDEN-KNQIVECNALPTLILMLRSEDSAIHYEAV 270
             +  E  D      A   L  LA     N +  +   N L  +   ++ +   +   + 
Sbjct: 627 QPDQYEAPDKDFMIVALDLLSGLAEGLGGNIEQLVARSNILTLMYQCMQDKMPEVRQSSF 686

Query: 271 GVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFA-ATDSDCKVHI 329
            ++G+L  +     K  +A   +  +   L+         A   +G+ +     + + +I
Sbjct: 687 ALLGDLTKACFQHVKPCIAD-FMPILGTNLNPEFISVCNNATWAIGEISIQMGIEMQPYI 745

Query: 330 VQRGAVRPLIEMLQSPDVQ--LREMSAFALGRLAQVITVSVLPAILIFI 376
                +  L+E++  P+    L E +A  +GRL  V    V P +  FI
Sbjct: 746 PM--VLHQLVEIINRPNTPKTLLENTAITIGRLGYVCPQEVAPMLQQFI 792

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} Length = 888

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin beta2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.9 bits (89), Expect = 0.001
 Identities = 28/175 (16%), Positives = 58/175 (33%), Gaps = 14/175 (8%)

Query: 206 EGGIPPLVELLEFT---DTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSED 262
           E G+  +++LL+ +   DT +QR     L  L              N L  ++  L+SED
Sbjct: 7   EQGLQQILQLLKESQSPDTTIQRTVQQKLEQL-------NQYPDFNNYLIFVLTKLKSED 59

Query: 263 SAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATD 322
                 +  ++ N V +        +        +  +       +    +L+   A+  
Sbjct: 60  EPTRSLSGLILKNNVKAHFQNFPNGVTDFIKSECLNNIGDSSPLIRATVGILITTIASKG 119

Query: 323 SDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQVITVSVLPAILIFII 377
                       +  L  +L S D    E +  AL ++ +     +   +L   +
Sbjct: 120 ELQNWP----DLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDVLDRPL 170

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.7 bits (109), Expect = 4e-06
 Identities = 33/175 (18%), Positives = 68/175 (38%), Gaps = 11/175 (6%)

Query: 209 IPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYE 268
           +  +++LLE  + +VQ  A   L  L  K  E + +      + TL   + S+   +   
Sbjct: 47  VKMILKLLEDKNGEVQNLAVKCLGPLVSKVKEYQVE----TIVDTLCTNMLSDKEQLRDI 102

Query: 269 AVGVIGNLVHSSPN-IKKEVLAAGALQPVIGLLSSCCSES-----QREAALLLGQFAATD 322
           +   +  ++   P       LAA   + + G L+S  ++      Q EA  ++    +  
Sbjct: 103 SSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQ 162

Query: 323 SDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQVITVSVLPAILIFII 377
               +       +  L+  L SP + +R+ +  ALG L       V   ++  ++
Sbjct: 163 GG-LLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNIVFVDLIEHLL 216

>d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]} Length = 233

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Leucine-rich repeat variant
domain: Leucine-rich repeat variant
species: Azotobacter vinelandii [TaxId: 354]

 Score = 39.7 bits (92), Expect = 3e-04
 Identities = 34/183 (18%), Positives = 55/183 (30%), Gaps = 17/183 (9%)

Query: 192 LAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGAL---RTLAFKNDENKNQIVEC 248
           LA      +        +  L  L+  +D  V+RA A  L   +  A   DE++   +  
Sbjct: 51  LADPFWERRAIAVRYSPVEALTPLIRDSDEVVRRAVAYRLPREQLSALMFDEDREVRITV 110

Query: 249 N---ALPTLILMLRSEDSAIHYEAVG------VIGNLVHSSPNIKKEVLAAGALQPVIGL 299
                L  L  M    D  +    V       +   +      ++K V      + +  +
Sbjct: 111 ADRLPLEQLEQMAADRDYLVRAYVVQRIPPGRLFRFMRDEDRQVRKLVAKRLPEESLGLM 170

Query: 300 LSSCCSESQREAALLLGQ----FAATDSDCKV-HIVQRGAVRPLIEMLQSPDVQLREMSA 354
                 E +R  A  L          D D  V       A    +  L  PD ++R   A
Sbjct: 171 TQDPEPEVRRIVASRLRGDDLLELLHDPDWTVRLAAVEHASLEALRELDEPDPEVRLAIA 230

Query: 355 FAL 357
             L
Sbjct: 231 GRL 233

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 588

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.8 bits (91), Expect = 5e-04
 Identities = 40/256 (15%), Positives = 88/256 (34%), Gaps = 28/256 (10%)

Query: 129 EHEVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADA 188
           + ++   S   L  +A        +      S L+  L   +        + V+   A+ 
Sbjct: 23  DVQLRLNSIKKLSTIA------LALGVERTRSELLPFLTDTIYDE-----DEVLLALAEQ 71

Query: 189 ITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVEC 248
           +          +    +   +PPL  L    +T V+  A  +LR ++ ++  +  +    
Sbjct: 72  LGTFTTLVGGPEYVHCL---LPPLESLATVEETVVRDKAVESLRAISHEHSPSDLE---- 124

Query: 249 NALPTLILMLRSEDSAIHYEAVGVIGNLV--HSSPNIKKEVLAAGALQPVIGLLSSCCSE 306
                L+  L   D      +   + ++     S  +K E+      Q    L S     
Sbjct: 125 AHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVKAEL-----RQYFRNLCSDDTPM 179

Query: 307 SQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQVITV 366
            +R AA  LG+FA      ++  V+   +     +       +R ++  A   +AQ++  
Sbjct: 180 VRRAAASKLGEFA---KVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQ 236

Query: 367 SVLPAILIFIIINECQ 382
             L A+++  +    +
Sbjct: 237 EDLEALVMPTLRQAAE 252

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 588

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.4 bits (90), Expect = 8e-04
 Identities = 23/154 (14%), Positives = 50/154 (32%), Gaps = 11/154 (7%)

Query: 209 IPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYE 268
               +  L      ++ AA   L+ L  K  +          +P ++ M    +      
Sbjct: 443 NSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEW---AHATIIPKVLAMSGDPNYLHRMT 499

Query: 269 AVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVH 328
            +  I  L        +++     L  V+ +     +  +   A  L +      +  + 
Sbjct: 500 TLFCINVLSEVCG---QDITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNSTLQ 556

Query: 329 IVQRGAVRPLIEMLQS-PDVQLREMSAFALGRLA 361
                 V+P++E L    DV ++  +  AL  L+
Sbjct: 557 ----SEVKPILEKLTQDQDVDVKYFAQEALTVLS 586

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Length = 458

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.4 bits (90), Expect = 6e-04
 Identities = 16/133 (12%), Positives = 49/133 (36%)

Query: 248 CNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSES 307
              L   +      D    +      G  +       ++ +    L  +   + +     
Sbjct: 322 VPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNPDWRY 381

Query: 308 QREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQVITVS 367
           +  A +  G         ++  +   A+  LIE+++ P V +R+ +A+ +GR+ +++  +
Sbjct: 382 RDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEA 441

Query: 368 VLPAILIFIIINE 380
            +  + +  ++  
Sbjct: 442 AINDVYLAPLLQC 454

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	399
d1wa5b_	503	Karyopherin alpha {Baker's yeast (Saccharomyces ce	99.98
d1q1sc_	434	Importin alpha {Mouse (Mus musculus) [TaxId: 10090	99.97
d1wa5b_	503	Karyopherin alpha {Baker's yeast (Saccharomyces ce	99.96
d1q1sc_	434	Importin alpha {Mouse (Mus musculus) [TaxId: 10090	99.95
d1jdha_	529	beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}	99.95
d1jdha_	529	beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}	99.94
d1xm9a1	457	Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}	99.9
d1xqra1	264	Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi	99.89
d1xqra1	264	Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi	99.88
d1xm9a1	457	Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}	99.82
d1b3ua_	588	Constant regulatory domain of protein phosphatase	99.31
d1b3ua_	588	Constant regulatory domain of protein phosphatase	99.26
d2vglb_	579	Adaptin beta subunit N-terminal fragment {Human (H	99.19
d1ibrb_	458	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	99.15
d1oyza_	276	Hypothetical protein YibA {Escherichia coli [TaxId	99.13
d2vglb_	579	Adaptin beta subunit N-terminal fragment {Human (H	99.03
d1qbkb_	888	Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96	98.95
d1qbkb_	888	Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96	98.9
d1ho8a_	477	Regulatory subunit H of the V-type ATPase {Baker's	98.78
d1oyza_	276	Hypothetical protein YibA {Escherichia coli [TaxId	98.72
d2vgla_	584	Adaptin alpha C subunit N-terminal fragment {Mouse	98.69
d1qgra_	876	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	98.68
d1ibrb_	458	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	98.64
d1te4a_	111	MTH187 {Archaeon Methanobacterium thermoautotrophi	98.55
d1u6gc_	1207	Cullin-associated NEDD8-dissociated protein 1 (Tip	98.54
d2bpta1	861	Importin beta {Baker's yeast (Saccharomyces cerevi	98.54
d1u6gc_	1207	Cullin-associated NEDD8-dissociated protein 1 (Tip	98.52
d1ho8a_	477	Regulatory subunit H of the V-type ATPase {Baker's	98.51
d2vgla_	584	Adaptin alpha C subunit N-terminal fragment {Mouse	98.33
d1qgra_	876	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	98.19
d1te4a_	111	MTH187 {Archaeon Methanobacterium thermoautotrophi	98.17
d2bpta1	861	Importin beta {Baker's yeast (Saccharomyces cerevi	98.17
d1upka_	330	Mo25 protein {Human (Homo sapiens) [TaxId: 9606]}	97.47
d1lrva_	233	Leucine-rich repeat variant {Azotobacter vinelandi	97.35
d1upka_	330	Mo25 protein {Human (Homo sapiens) [TaxId: 9606]}	96.99
d1lsha1	336	Lipovitellin-phosvitin complex, superhelical domai	96.47
d1lrva_	233	Leucine-rich repeat variant {Azotobacter vinelandi	96.46
d1lsha1	336	Lipovitellin-phosvitin complex, superhelical domai	95.88
d2bnxa1	343	Diaphanous protein homolog 1, Diap1 (Dia1, DRF1) {	93.06
d2bnxa1	343	Diaphanous protein homolog 1, Diap1 (Dia1, DRF1) {	91.57
d1wa5c_	959	Exportin Cse1p {Baker's yeast (Saccharomyces cerev	91.22
d1wa5c_	959	Exportin Cse1p {Baker's yeast (Saccharomyces cerev	88.47

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin alpha
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.98  E-value=5.5e-30  Score=245.74  Aligned_cols=286  Identities=19%  Similarity=0.273  Sum_probs=255.8

Q ss_pred             hhHHHHhhhhhcchhhhHHHHHHHHHHHHHHcCC-hhHHHHHHhCCChHHHHhcccCCCCcccccCCCcchHHHHHHHHH
Q 015851           60 SAQVNVLNTTFSWLEADRAAAKRATHVLAELAKN-EEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAF  138 (399)
Q Consensus        60 ~~~~~~L~~~l~~~~~~~~~~~~a~~~L~~l~~~-~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~~~~~a~~  138 (399)
                      .+.++.|..++.. +.+..++..|+|+|.+++.+ +.....+...|+++.++.+|.+++.            +++..|+|
T Consensus       118 ~g~i~~Lv~~l~~-~~~~~iq~~a~~~L~ni~~~~~~~~~~~~~~g~i~~l~~lL~s~~~------------~i~~~a~~  184 (503)
T d1wa5b_         118 AGVVPRLVEFMRE-NQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSV------------EVKEQAIW  184 (503)
T ss_dssp             TTCHHHHHHTTST-TSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHCCH------------HHHHHHHH
T ss_pred             CCChHHHHHHHcC-CCCHHHHHHHHHHHHHHHcCCHHHHHHHHhCCChHHHHHHhcCCCh------------hHHHHHHH
Confidence            4456777776642 34677899999999999985 7777888999999999999998766            89999999


Q ss_pred             HHHHhc-CChhhHHHHHhcCcHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhhc
Q 015851          139 ALGLLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLE  217 (399)
Q Consensus       139 ~L~~l~-~~~~~~~~i~~~~~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~  217 (399)
                      +|+|++ .+++++..+.+.|+++.++.++.....        +++..++|+|.+++.............++++.++.++.
T Consensus       185 ~L~nia~~~~~~r~~l~~~~~~~~L~~ll~~~~~--------~~~~~~~~~l~nl~~~~~~~~~~~~~~~~l~~l~~~l~  256 (503)
T d1wa5b_         185 ALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKP--------SLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIY  256 (503)
T ss_dssp             HHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSCCH--------HHHHHHHHHHHHHHCCSSSCCCHHHHGGGHHHHHHHTT
T ss_pred             HHHHHhhhhHHHHHHHHhhcccccchhhcccCCH--------HHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHHHhc
Confidence            999999 789999999999999999999987665        88999999999999765544444556789999999999


Q ss_pred             CCCHHHHHHHHHHHHHhhcCChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHHCCCcHHHH
Q 015851          218 FTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVI  297 (399)
Q Consensus       218 ~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~  297 (399)
                      +++++++..++++|.+++.+.++....+.+.|+++.++.++.+++..++..++.++++++.+.+.....+.+.|+++.+.
T Consensus       257 ~~d~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~l~nl~~~~~~~~~~~~~~~~l~~l~  336 (503)
T d1wa5b_         257 SMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALR  336 (503)
T ss_dssp             CCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHH
T ss_pred             cccHHHHHHHHHHHHhhccCCchhhhhhhhhhhhhhhhhcccCCchhhhhhHHHHHHHHHHHHHHHHHhhhccchHHHHH
Confidence            99999999999999999987778888899999999999999999999999999999999988788888889999999999


Q ss_pred             HhhcCCChHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhccCCC
Q 015851          298 GLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQVITV  366 (399)
Q Consensus       298 ~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~  366 (399)
                      .+++++++.++..++|+|+|++.+++.....+.+.|+++.++.++.+++.+++..|+++|.|++....+
T Consensus       337 ~ll~~~~~~i~~~~~~~l~nl~~~~~~~~~~i~~~~~l~~li~~l~~~~~~v~~~a~~~l~nl~~~~~~  405 (503)
T d1wa5b_         337 LLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQ  405 (503)
T ss_dssp             HHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTT
T ss_pred             HHhcCCCHHHHHHHHHHHHHHhhccHHHHHHHHHccccchhHHhcccCChhHHHHHHHHHHHHHhcccc
Confidence            999999999999999999999988888889999999999999999999999999999999999976543

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.97  E-value=3e-28  Score=228.75  Aligned_cols=315  Identities=22%  Similarity=0.333  Sum_probs=266.1

Q ss_pred             hhHHHHhhhhhcchhhhHHHHHHHHHHHHHHcCC-hhHHHHHHhCCChHHHHhcccCCCCcccccCCCcchHHHHHHHHH
Q 015851           60 SAQVNVLNTTFSWLEADRAAAKRATHVLAELAKN-EEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAF  138 (399)
Q Consensus        60 ~~~~~~L~~~l~~~~~~~~~~~~a~~~L~~l~~~-~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~~~~~a~~  138 (399)
                      .+.+|.|.+++. .++++.+|..|+++|.+++.+ ++.+..+++.|+++.|+++|.+++.            ++++.|++
T Consensus        55 ~g~i~~Lv~lL~-~~~~~~v~~~a~~~L~~la~~~~~~~~~i~~~~~i~~l~~~L~~~~~------------~~~~~a~~  121 (434)
T d1q1sc_          55 AGLIPKFVSFLG-KTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHA------------HISEQAVW  121 (434)
T ss_dssp             TTCHHHHHHHTT-CGGGHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCH------------HHHHHHHH
T ss_pred             CCCHHHHHHHHc-cCCCHHHHHHHHHHHHHHhcCChhhhhHhhhccchhhhhhccccCCH------------HHHHHHHH
Confidence            356777777774 235677999999999999885 7888899999999999999988765            89999999


Q ss_pred             HHHHhc-CChhhHHHHHhcCcHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhhc
Q 015851          139 ALGLLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLE  217 (399)
Q Consensus       139 ~L~~l~-~~~~~~~~i~~~~~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~  217 (399)
                      +|++++ .++..+..+.+.|+++.++.++.........   ......+++++.+++.............++++.+..++.
T Consensus       122 ~L~nl~~~~~~~~~~i~~~~~~~~l~~~l~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~l~~ll~  198 (434)
T d1q1sc_         122 ALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLA---CGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLH  198 (434)
T ss_dssp             HHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSC---HHHHHHHHHHHHHHTCCCTTCCCHHHHHHHHHHHHHHTT
T ss_pred             HHHHHhccchHHHHHHHHhhhhhHHHHHHHhcccccch---HHHHHHHHHHHHHHhhcccccchhhhhhhHHHHHHHHHh
Confidence            999999 7788999999999999999999876543211   156677899999999766555554556678999999999


Q ss_pred             CCCHHHHHHHHHHHHHhhcCChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHHCCCcHHHH
Q 015851          218 FTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVI  297 (399)
Q Consensus       218 ~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~  297 (399)
                      +++++++..++++|.+++.+.+.....+...|+++.++.++.+++++++..++++|.+++.+++..+..+++.|+++.++
T Consensus       199 ~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~Lv~ll~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~~~~~~l~  278 (434)
T d1q1sc_         199 HNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFP  278 (434)
T ss_dssp             CSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHH
T ss_pred             ccccchhhhHHhhhcccchhhhhhHHHHhhcccchhcccccccchhhhhhchhhhhhhHHhhhhHHHHHHHhccccchHH
Confidence            99999999999999999987777777788899999999999999999999999999999988788888999999999999


Q ss_pred             HhhcCCChHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhccCCC---------Cc
Q 015851          298 GLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQVITV---------SV  368 (399)
Q Consensus       298 ~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~---------~~  368 (399)
                      .++++++++++..|+++|.+++...++....+.+.|+++.+++++.+++++++..|+++|.+++...++         ++
T Consensus       279 ~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~li~~l~~~~~~v~~~a~~~l~nl~~~~~~~~~~~l~~~~~  358 (434)
T d1q1sc_         279 SLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGI  358 (434)
T ss_dssp             HHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTC
T ss_pred             HhhcccchhhhHHHHHHHhhhccccchhHHHHhhhhhHHHHHHHHhccChHHHHHHHHHHHHHHhcCCHHHHHHHHHCCc
Confidence            999999999999999999999987788888899999999999999999999999999999999987654         24


Q ss_pred             chhHHHHHhhccccHHHHHHHHhh
Q 015851          369 LPAILIFIIINECQLEVLAFVLSE  392 (399)
Q Consensus       369 ~~~~~~~~~~~~~~~~~~~~~l~~  392 (399)
                      ++.++..+  .+...++....+..
T Consensus       359 i~~L~~ll--~~~d~~~~~~~l~~  380 (434)
T d1q1sc_         359 IEPLMNLL--SAKDTKIIQVILDA  380 (434)
T ss_dssp             HHHHHHHT--TSSCHHHHHHHHHH
T ss_pred             HHHHHHHh--cCCCHHHHHHHHHH
Confidence            55555444  34444444444433

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin alpha
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.96  E-value=1.5e-27  Score=228.51  Aligned_cols=299  Identities=18%  Similarity=0.265  Sum_probs=256.8

Q ss_pred             HHHHhhhhhcchhhhHHHHHHHHHHHHHHcCC--hhHHHHHHhCCChHHHHhcccCCCCcccccCCCcchHHHHHHHHHH
Q 015851           62 QVNVLNTTFSWLEADRAAAKRATHVLAELAKN--EEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFA  139 (399)
Q Consensus        62 ~~~~L~~~l~~~~~~~~~~~~a~~~L~~l~~~--~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~~~~~a~~~  139 (399)
                      .++.+...+  .++|...+..|+..+.++...  ....+.+++.|++|.|++++..+.+           ++++..|+++
T Consensus        77 ~l~~~~~~~--~s~~~~~~~~a~~~~r~~ls~~~~~~i~~ii~~g~i~~Lv~~l~~~~~-----------~~iq~~a~~~  143 (503)
T d1wa5b_          77 ELPQMTQQL--NSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQP-----------EMLQLEAAWA  143 (503)
T ss_dssp             CHHHHHHHH--SCSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSC-----------HHHHHHHHHH
T ss_pred             HHHHHHHHh--cCCCHHHHHHHHHHHHHHHhcCCCchHHHHHHCCChHHHHHHHcCCCC-----------HHHHHHHHHH
Confidence            344444444  456777888999999998763  4456788999999999999986544           2789999999


Q ss_pred             HHHhc-CChhhHHHHHhcCcHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhhcC
Q 015851          140 LGLLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEF  218 (399)
Q Consensus       140 L~~l~-~~~~~~~~i~~~~~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~  218 (399)
                      |++++ .++.....+.+.|+++.++.+|.+.+.        +++..++|+|+|++..++..+..+...|+++.++.++.+
T Consensus       144 L~ni~~~~~~~~~~~~~~g~i~~l~~lL~s~~~--------~i~~~a~~~L~nia~~~~~~r~~l~~~~~~~~L~~ll~~  215 (503)
T d1wa5b_         144 LTNIASGTSAQTKVVVDADAVPLFIQLLYTGSV--------EVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNS  215 (503)
T ss_dssp             HHHHTTSCHHHHHHHHHTTCHHHHHHHHHHCCH--------HHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGS
T ss_pred             HHHHHcCCHHHHHHHHhCCChHHHHHHhcCCCh--------hHHHHHHHHHHHHhhhhHHHHHHHHhhcccccchhhccc
Confidence            99999 677788889999999999999998766        899999999999998888889989999999999999999


Q ss_pred             CCHHHHHHHHHHHHHhhcCChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHHCCCcHHHHH
Q 015851          219 TDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIG  298 (399)
Q Consensus       219 ~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~  298 (399)
                      .++.++..++++|.+++.+.+.........+++|.++.++.+++++++..++++|.+++...++....+.+.|+++.++.
T Consensus       216 ~~~~~~~~~~~~l~nl~~~~~~~~~~~~~~~~l~~l~~~l~~~d~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~  295 (503)
T d1wa5b_         216 NKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVE  295 (503)
T ss_dssp             CCHHHHHHHHHHHHHHHCCSSSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhccCCchhhhhhhhhhhhhhhhh
Confidence            99999999999999999854444444455678999999999999999999999999999877777888999999999999


Q ss_pred             hhcCCChHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhccCCC--------Ccch
Q 015851          299 LLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQVITV--------SVLP  370 (399)
Q Consensus       299 lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~--------~~~~  370 (399)
                      ++.+++..++..++.+|+|++...+.....+.+.|+++.|..++.++++.++..++++|.|++...++        ++++
T Consensus       296 ll~~~~~~v~~~al~~l~nl~~~~~~~~~~~~~~~~l~~l~~ll~~~~~~i~~~~~~~l~nl~~~~~~~~~~i~~~~~l~  375 (503)
T d1wa5b_         296 LLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIP  375 (503)
T ss_dssp             GGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHH
T ss_pred             cccCCchhhhhhHHHHHHHHHHHHHHHHHhhhccchHHHHHHHhcCCCHHHHHHHHHHHHHHhhccHHHHHHHHHccccc
Confidence            99999999999999999999987777788888999999999999999999999999999999986653        4666


Q ss_pred             hHHHHHhhccc
Q 015851          371 AILIFIIINEC  381 (399)
Q Consensus       371 ~~~~~~~~~~~  381 (399)
                      .++..+.-.+.
T Consensus       376 ~li~~l~~~~~  386 (503)
T d1wa5b_         376 PLVKLLEVAEY  386 (503)
T ss_dssp             HHHHHHHHSCH
T ss_pred             hhHHhcccCCh
Confidence            66665544443

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.95  E-value=5.5e-26  Score=213.11  Aligned_cols=290  Identities=20%  Similarity=0.288  Sum_probs=249.3

Q ss_pred             hhhhHHHHhhhhhcchhhhHHHHHHHHHHHHHHcCC-hhHHHHHHhCCChHHHHhcccCCCCcccccCCCcchHHHHHHH
Q 015851           58 EVSAQVNVLNTTFSWLEADRAAAKRATHVLAELAKN-EEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGS  136 (399)
Q Consensus        58 ~~~~~~~~L~~~l~~~~~~~~~~~~a~~~L~~l~~~-~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~~~~~a  136 (399)
                      ...+.++.|..++  .+++..++..|+++|.+++.+ +..+..+.+.|+++.++.++........       .......+
T Consensus        96 ~~~~~i~~l~~~L--~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~~~~l~~~l~~~~~~~~-------~~~~~~~~  166 (434)
T d1q1sc_          96 VDGGAIPAFISLL--ASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTL-------ACGYLRNL  166 (434)
T ss_dssp             HHTTHHHHHHHHT--TCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGS-------CHHHHHHH
T ss_pred             hhccchhhhhhcc--ccCCHHHHHHHHHHHHHHhccchHHHHHHHHhhhhhHHHHHHHhcccccc-------hHHHHHHH
Confidence            3456677777777  455778999999999999985 8888899999999999999987654211       12456678


Q ss_pred             HHHHHHhcC-ChhhHHHHHhcCcHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHh
Q 015851          137 AFALGLLAV-KPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVEL  215 (399)
Q Consensus       137 ~~~L~~l~~-~~~~~~~i~~~~~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~l  215 (399)
                      .+++.+++. .+.........++++.+..++...+.        +++..++++|.+++..++.....+...|+++.++.+
T Consensus       167 ~~~l~~~~~~~~~~~~~~~~~~~l~~l~~ll~~~~~--------~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~Lv~l  238 (434)
T d1q1sc_         167 TWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDP--------EVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKL  238 (434)
T ss_dssp             HHHHHHHTCCCTTCCCHHHHHHHHHHHHHHTTCSCH--------HHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHH
T ss_pred             HHHHHHHhhcccccchhhhhhhHHHHHHHHHhcccc--------chhhhHHhhhcccchhhhhhHHHHhhcccchhcccc
Confidence            899999994 44444444556688999998887665        899999999999998777777777788999999999


Q ss_pred             hcCCCHHHHHHHHHHHHHhhcCChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHHCCCcHH
Q 015851          216 LEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQP  295 (399)
Q Consensus       216 l~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~  295 (399)
                      +.++++.++..++++|.+++.+++.....+.+.|+++.++.++++++++++..++++|++++...+.....+.+.|+++.
T Consensus       239 l~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~  318 (434)
T d1q1sc_         239 LGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPF  318 (434)
T ss_dssp             HTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHH
T ss_pred             cccchhhhhhchhhhhhhHHhhhhHHHHHHHhccccchHHHhhcccchhhhHHHHHHHhhhccccchhHHHHhhhhhHHH
Confidence            99999999999999999999988888889999999999999999999999999999999999887888888999999999


Q ss_pred             HHHhhcCCChHHHHHHHHHHHHhhccC-hhhHHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhccC
Q 015851          296 VIGLLSSCCSESQREAALLLGQFAATD-SDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQVI  364 (399)
Q Consensus       296 L~~lL~~~~~~v~~~a~~~L~~l~~~~-~~~~~~l~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~  364 (399)
                      ++.++.++++.++..|+++|+|++... ++....+.+.|+++.|++++.+++++++..+.++|.++....
T Consensus       319 li~~l~~~~~~v~~~a~~~l~nl~~~~~~~~~~~l~~~~~i~~L~~ll~~~d~~~~~~~l~~l~~ll~~~  388 (434)
T d1q1sc_         319 LVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAA  388 (434)
T ss_dssp             HHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHHTTSSCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhccChHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhcCCCHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999998753 466778889999999999999999999999999999998643

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=1.5e-26  Score=223.04  Aligned_cols=281  Identities=22%  Similarity=0.282  Sum_probs=246.8

Q ss_pred             hhHHHHhhhhhcchhhhHHHHHHHHHHHHHHcCChhHHHHHHhC-CChHHHHhcccCCCCcccccCCCcchHHHHHHHHH
Q 015851           60 SAQVNVLNTTFSWLEADRAAAKRATHVLAELAKNEEVVNWIVEG-GAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAF  138 (399)
Q Consensus        60 ~~~~~~L~~~l~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~-g~l~~L~~lL~~~~~~~~~~~~~~~~~~~~~~a~~  138 (399)
                      .+.+|.|.+++  .++|..++..|+..+.+++.+...+..+... |+++.|+.+|.+.+.           +++++.+++
T Consensus        16 ~~aip~L~~lL--~~~~~~v~~~A~~~l~~l~~~~~~~~~~~~~~~~v~~l~~~L~~~~~-----------~~~~~~a~~   82 (529)
T d1jdha_          16 TRAIPELTKLL--NDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTND-----------VETARCTAG   82 (529)
T ss_dssp             -CHHHHHHHHH--TCSCHHHHHHHHHHHHHHHTSHHHHHHHHTCHHHHHHHHHHHHHCCC-----------HHHHHHHHH
T ss_pred             HHHHHHHHHHH--cCCCHHHHHHHHHHHHHHHhccHHHHHHHHhhhHHHHHHHHHcCCCC-----------HHHHHHHHH
Confidence            45577777777  4567889999999999999988888877765 789999999986543           278999999


Q ss_pred             HHHHhcCChhhHHHHHhcCcHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhhcC
Q 015851          139 ALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEF  218 (399)
Q Consensus       139 ~L~~l~~~~~~~~~i~~~~~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~  218 (399)
                      +|.+++.+++.+..+++.|+++.|+.+|++++.        +++..++++|.+++.+++..+..+...|+++.|+.+|++
T Consensus        83 ~L~~l~~~~~~~~~i~~~g~i~~Li~lL~~~~~--------~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~  154 (529)
T d1jdha_          83 TLHNLSHHREGLLAIFKSGGIPALVKMLGSPVD--------SVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNK  154 (529)
T ss_dssp             HHHHHTTSHHHHHHHHHTTHHHHHHHHTTCSCH--------HHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGC
T ss_pred             HHHHHhCCchhHHHHHHCCCHHHHHHHhCCCCH--------HHHHHHHHHHHHhhcccchhhhHHHhcCCchHHHHHHHc
Confidence            999999999999999999999999999987665        899999999999999888888888899999999999999


Q ss_pred             CCHHHHHHHHHHHHHhhcCChhhHHHHHhcCCHHHHHHhhcC-CCHHHHHHHHHHHHHhhcCChhHHHHHHHCCCcHHHH
Q 015851          219 TDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRS-EDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVI  297 (399)
Q Consensus       219 ~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~L~~ll~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~  297 (399)
                      +++.++..++++|.+++..+++.+..+...|+++.++.++.+ +++.++..+++++.+++.. ++.+..+.+.|+++.|+
T Consensus       155 ~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~l~~ls~~-~~~~~~~~~~g~~~~L~  233 (529)
T d1jdha_         155 TNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVC-SSNKPAIVEAGGMQALG  233 (529)
T ss_dssp             CCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTS-TTHHHHHHHTTHHHHHH
T ss_pred             cChHHHHHHHHHHHHHhhhhhHHHHHHHhcccchHHHHHHHhhhhHHHHHHHHHHHhhhhcc-ccccchhhhhhhhhhHH
Confidence            999999999999999998778888889999999999999965 5678999999999999864 67788899999999999


Q ss_pred             HhhcCCChHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhccCC
Q 015851          298 GLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQVIT  365 (399)
Q Consensus       298 ~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~  365 (399)
                      .++.+++..++..+++++.+++....   ......|+++.|++++.+++..++..|+++|++++.+++
T Consensus       234 ~ll~~~~~~~~~~a~~~l~~ls~~~~---~~~~~~~~i~~Lv~ll~~~~~~~~~~a~~~L~~l~~~~~  298 (529)
T d1jdha_         234 LHLTDPSQRLVQNCLWTLRNLSDAAT---KQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNY  298 (529)
T ss_dssp             TTTTSSCHHHHHHHHHHHHHHHTTCT---TCSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCH
T ss_pred             HHhcccchhhhhhhhhHHHhcccccc---chhhhhhcchhhhhhcccccHHHHHHHHHHHHhhccchh
Confidence            99999999999999999999974322   122335789999999999999999999999999997654

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=6.3e-26  Score=218.55  Aligned_cols=292  Identities=22%  Similarity=0.243  Sum_probs=251.4

Q ss_pred             hHHHhHhhhhhhHHHHhhhhhcchhhhHHHHHHHHHHHHHHcCChhHHHHHHhCCChHHHHhcccCCCCcccccCCCcch
Q 015851           50 DARQALLSEVSAQVNVLNTTFSWLEADRAAAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFE  129 (399)
Q Consensus        50 d~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~  129 (399)
                      ++.........+.++.|...+.. ..+..++..|+++|.+++.+++.+..+++.|+++.|+.+|++++.           
T Consensus        48 ~~~~~~~~~~~~~v~~l~~~L~~-~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~Li~lL~~~~~-----------  115 (529)
T d1jdha_          48 EASRHAIMRSPQMVSAIVRTMQN-TNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVD-----------  115 (529)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHHTTCSCH-----------
T ss_pred             cHHHHHHHHhhhHHHHHHHHHcC-CCCHHHHHHHHHHHHHHhCCchhHHHHHHCCCHHHHHHHhCCCCH-----------
Confidence            33333334456678888777742 345678999999999999999999999999999999999987665           


Q ss_pred             HHHHHHHHHHHHHhc-CChhhHHHHHhcCcHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhhcCchhHHHHHhcCC
Q 015851          130 HEVEKGSAFALGLLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGG  208 (399)
Q Consensus       130 ~~~~~~a~~~L~~l~-~~~~~~~~i~~~~~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~  208 (399)
                       +++..|+++|++++ .++..+..+.+.|+++.|+.+|++.+.        +++..++++|.+++..++..+..+...|+
T Consensus       116 -~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~--------~~~~~a~~~L~~l~~~~~~~~~~~~~~~~  186 (529)
T d1jdha_         116 -SVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNV--------KFLAITTDCLQILAYGNQESKLIILASGG  186 (529)
T ss_dssp             -HHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCCCH--------HHHHHHHHHHHHHHTTCHHHHHHHHHTTH
T ss_pred             -HHHHHHHHHHHHhhcccchhhhHHHhcCCchHHHHHHHccCh--------HHHHHHHHHHHHHhhhhhHHHHHHHhccc
Confidence             89999999999999 777888889999999999999987765        89999999999999888888888888999


Q ss_pred             hHHHHHhhcCCC-HHHHHHHHHHHHHhhcCChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHH
Q 015851          209 IPPLVELLEFTD-TKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEV  287 (399)
Q Consensus       209 i~~L~~ll~~~~-~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~  287 (399)
                      ++.++.++.+.+ +.++..+++++.+++. +++++..+.+.|+++.|+.++.+++.+++..+++++.+++.....   ..
T Consensus       187 ~~~L~~ll~~~~~~~~~~~~~~~l~~ls~-~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~l~~ls~~~~~---~~  262 (529)
T d1jdha_         187 PQALVNIMRTYTYEKLLWTTSRVLKVLSV-CSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATK---QE  262 (529)
T ss_dssp             HHHHHHHHHHCCCHHHHHHHHHHHHHHTT-STTHHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHHHTTCTT---CS
T ss_pred             chHHHHHHHhhhhHHHHHHHHHHHhhhhc-cccccchhhhhhhhhhHHHHhcccchhhhhhhhhHHHhccccccc---hh
Confidence            999999997654 7899999999999997 688899999999999999999999999999999999999743222   12


Q ss_pred             HHCCCcHHHHHhhcCCChHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHhhC--CCCHHHHHHHHHHHHHhhccCC
Q 015851          288 LAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQ--SPDVQLREMSAFALGRLAQVIT  365 (399)
Q Consensus       288 ~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~v~~L~~ll~--~~~~~v~~~a~~~L~~l~~~~~  365 (399)
                      ...|+++.|++++.+++..++..|+++|++++..+++.+..+.+.|+++.|+.++.  ++.++++..++.+|++++....
T Consensus       263 ~~~~~i~~Lv~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~Li~~l~~~~~~~~~~~~a~~aL~~l~~~~~  342 (529)
T d1jdha_         263 GMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQ  342 (529)
T ss_dssp             CCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSST
T ss_pred             hhhhcchhhhhhcccccHHHHHHHHHHHHhhccchhHHHHHHHHhhhHHHHHHHHHhhhcchhHHHHHHHHhhcccchhh
Confidence            22467899999999999999999999999999877888889999999999999884  5678899999999999997665


Q ss_pred             C
Q 015851          366 V  366 (399)
Q Consensus       366 ~  366 (399)
                      .
T Consensus       343 ~  343 (529)
T d1jdha_         343 E  343 (529)
T ss_dssp             T
T ss_pred             c
Confidence            3

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=2e-22  Score=188.18  Aligned_cols=279  Identities=15%  Similarity=0.182  Sum_probs=214.8

Q ss_pred             HHHhhhhhcchhhhHHHHHHHHHHHHHHcC-ChhHHHHHHhCCChHHHHhcccCCCCcccccCCCcchHHHHHHHHHHHH
Q 015851           63 VNVLNTTFSWLEADRAAAKRATHVLAELAK-NEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALG  141 (399)
Q Consensus        63 ~~~L~~~l~~~~~~~~~~~~a~~~L~~l~~-~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~~~~~a~~~L~  141 (399)
                      +|.|.+++  .+.++++|..|+++|.+++. +++++..+.+.|++|.|+++|++++.            ++|..|+++|.
T Consensus         4 ip~lv~~L--~~~~~~~~~~a~~~l~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~------------~v~~~a~~aL~   69 (457)
T d1xm9a1           4 IPKAVQYL--SSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQ------------NVQQAAAGALR   69 (457)
T ss_dssp             HHHHHHHH--HSSCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCH------------HHHHHHHHHHH
T ss_pred             HHHHHHHh--CCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCcHHHHHHHHCCCCH------------HHHHHHHHHHH
Confidence            56677777  45678899999999999997 58999999999999999999987766            89999999999


Q ss_pred             Hhc-CChhhHHHHHhcCcHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhh----
Q 015851          142 LLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELL----  216 (399)
Q Consensus       142 ~l~-~~~~~~~~i~~~~~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll----  216 (399)
                      +|+ .+++++..+.+.|+++.++.++....+.       +++..++++|.+++...... ......++.+.+..++    
T Consensus        70 ~L~~~~~~~~~~i~~~g~v~~li~~l~~~~~~-------~~~~~a~~~l~~l~~~~~~~-~~~~~~~~~~l~~~~~~~~~  141 (457)
T d1xm9a1          70 NLVFRSTTNKLETRRQNGIREAVSLLRRTGNA-------EIQKQLTGLLWNLSSTDELK-EELIADALPVLADRVIIPFS  141 (457)
T ss_dssp             HHHSSCHHHHHHHHHTTCHHHHHHHHTTCCCH-------HHHHHHHHHHHHHHTSSSTH-HHHHHHHHHHHHHHTTHHHH
T ss_pred             HHHcCCHHHHHHHHHCCChHHHHHHHhccCcH-------HHHHHHHHHHHHHHhhhhhH-HHHHhcccHHHHHHHHhhhh
Confidence            999 8899999999999999999999876554       88999999999999644322 2222111111110000    


Q ss_pred             -----------cCC------------------------------------------------------------------
Q 015851          217 -----------EFT------------------------------------------------------------------  219 (399)
Q Consensus       217 -----------~~~------------------------------------------------------------------  219 (399)
                                 ...                                                                  
T Consensus       142 ~~~~~~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~~~~~~~~~~~~~~~l~~~~~~  221 (457)
T d1xm9a1         142 GWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYR  221 (457)
T ss_dssp             TCC---------CCCHHHHHHHHHHHHHHTTSHHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTT
T ss_pred             hhhcchhhhhcccccHHHHHHHHHHHHHHhcCchHHHHHHHHhccHHHHHHHHhcchhhhhhHHHHHHHHHHHHhhhhhh
Confidence                       000                                                                  


Q ss_pred             ---------------------------------------------------------------------------CHHHH
Q 015851          220 ---------------------------------------------------------------------------DTKVQ  224 (399)
Q Consensus       220 ---------------------------------------------------------------------------~~~v~  224 (399)
                                                                                                 ++.++
T Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~l~~~~~~~~~~  301 (457)
T d1xm9a1         222 LDAEVPTRYRQLEYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATL  301 (457)
T ss_dssp             HHHHSCCHHHHHHHTC----------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHH
T ss_pred             hHHHHHHHHHHHHhhhhhhhhHHHhhhhhhhhhHHHHHHHHhhhhHHhhhhhHHHHHHHhhcHHHHHHHHHhcccchHHH
Confidence                                                                                       23334


Q ss_pred             HHHHHHHHHhhcCChh-----hHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHHCCCcHHHHHh
Q 015851          225 RAAAGALRTLAFKNDE-----NKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGL  299 (399)
Q Consensus       225 ~~a~~~L~~L~~~~~~-----~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~l  299 (399)
                      ..+.+++.+++.....     ....+.+.|+++.|+.++.+++++++..+++++++++.+ +..+..+ ..++++.++.+
T Consensus       302 ~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~l~~La~~-~~~~~~i-~~~~i~~li~~  379 (457)
T d1xm9a1         302 EACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRH-PLLHRVM-GNQVFPEVTRL  379 (457)
T ss_dssp             HHHHHHHHHHTTCSSSHHHHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTS-GGGHHHH-HHHTHHHHHHT
T ss_pred             HHHHHHHHHHhhccccchHHHHHHHHHHcCChHHHHhhhcCccHHHHHHHHHHHHHHhhC-hhHHHHH-HHhhHHHHHHH
Confidence            4445555555542221     223344578889999999999999999999999999965 5554544 45789999999


Q ss_pred             hcC------CChHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHhhCC-CCHHHHHHHHHHHHHhhccCC
Q 015851          300 LSS------CCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQS-PDVQLREMSAFALGRLAQVIT  365 (399)
Q Consensus       300 L~~------~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~v~~L~~ll~~-~~~~v~~~a~~~L~~l~~~~~  365 (399)
                      |..      .+.+++..++++|.|++..+++.++.+.+.|+++.|+.++.+ +++.+++.|+.+|.+|+.+.+
T Consensus       380 L~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~i~~L~~l~~~~~~~~~~~aA~~~L~~L~~~~~  452 (457)
T d1xm9a1         380 LTSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDMWSSKE  452 (457)
T ss_dssp             TTSCCSCSTTHHHHHHHHHHHHHHHHTTCTHHHHHHCCHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTSSSTT
T ss_pred             HhccccCcCCcHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHhCCCCHHHHHHHHHHHHHHHcCHh
Confidence            863      234789999999999998888999999999999999999975 578899999999999987765

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HspBP1 domain
domain: Hsp70-binding protein 1 (HspBP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=1e-21  Score=171.47  Aligned_cols=197  Identities=23%  Similarity=0.255  Sum_probs=177.9

Q ss_pred             hhhHHHHHHHHHHHHHHcCChhHHHHHHhCCChHHHHh-cccCCCCcccccCCCcchHHHHHHHHHHHHHhc-CChhhHH
Q 015851           74 EADRAAAKRATHVLAELAKNEEVVNWIVEGGAVPALVK-HLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA-VKPEHQQ  151 (399)
Q Consensus        74 ~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~l~~L~~-lL~~~~~~~~~~~~~~~~~~~~~~a~~~L~~l~-~~~~~~~  151 (399)
                      +.+.+.+..|+..|.+++.+.+++..+...|++++++. ++++++.            ++|..|+++|++++ .++..+.
T Consensus        28 ~~~~~~~~~Al~~L~~L~~~~d~a~~l~~~gg~~~ll~~ll~s~~~------------~vr~~A~~~L~~l~~~~~~~~~   95 (264)
T d1xqra1          28 AADQQEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGAA------------GLRWRAAQLIGTCSQNVAAIQE   95 (264)
T ss_dssp             HHHHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHTTTTCSSH------------HHHHHHHHHHHHHHTTCHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHcCHHHHHHHHHcCCHHHHHHHHhCCCCH------------HHHHHHHHHHHHHHHHHHHHHH
Confidence            45667899999999999999999999999999999886 5666554            89999999999999 6788999


Q ss_pred             HHHhcCcHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHH
Q 015851          152 LIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGAL  231 (399)
Q Consensus       152 ~i~~~~~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L  231 (399)
                      .+.+.|+++.|+.++.+..+.       +++..++++|.+++.+++..+..+...|+++.|+.++.++++.++..++++|
T Consensus        96 ~~~~~~~i~~Lv~lL~~~~~~-------~v~~~a~~aL~~l~~~~~~~~~~~~~~~gi~~L~~lL~~~~~~~~~~a~~~L  168 (264)
T d1xqra1          96 QVLGLGALRKLLRLLDRDACD-------TVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLL  168 (264)
T ss_dssp             HHHHTTHHHHHHHHHHHCSCH-------HHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHH
T ss_pred             HHHHcCchHHHHHHhhcCCCH-------HHHHHHHHHHHHHhccchhhHHHHHHhhhhhHHHHHHhcCchHHHHHHHHHH
Confidence            999999999999999865543       8999999999999998988888899999999999999999999999999999


Q ss_pred             HHhhcCChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHH
Q 015851          232 RTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLA  289 (399)
Q Consensus       232 ~~L~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~  289 (399)
                      ++++.++++.+..+.+.|+++.|+.++.+++++++..|+++|++|+..++.....+..
T Consensus       169 ~~l~~~~~~~~~~~~~~~~v~~L~~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~  226 (264)
T d1xqra1         169 QNLLVGHPEHKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTDFPQGVRECRE  226 (264)
T ss_dssp             HHHHHHCGGGHHHHHHTTHHHHHHHHHTSCCSTHHHHHHHHHHHHHTTCHHHHHHHHC
T ss_pred             HHHHhccHHHHHHHHHhhhHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence            9999888999999999999999999999999999999999999999877776655543

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HspBP1 domain
domain: Hsp70-binding protein 1 (HspBP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=2.9e-21  Score=168.49  Aligned_cols=195  Identities=16%  Similarity=0.168  Sum_probs=176.9

Q ss_pred             hHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHH-HhccccCccccccHHHHHHHHHHHHHHhhcCchhHHHHHhcC
Q 015851          129 EHEVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNL-LKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEG  207 (399)
Q Consensus       129 ~~~~~~~a~~~L~~l~~~~~~~~~i~~~~~i~~L~~~-L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~  207 (399)
                      +.+.+..|+.+|.+++.+.+++..+...|+++.++.. +.+.+.        +++..++++|++++.+++..+..+...|
T Consensus        30 ~~~~~~~Al~~L~~L~~~~d~a~~l~~~gg~~~ll~~ll~s~~~--------~vr~~A~~~L~~l~~~~~~~~~~~~~~~  101 (264)
T d1xqra1          30 DQQEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGAA--------GLRWRAAQLIGTCSQNVAAIQEQVLGLG  101 (264)
T ss_dssp             HHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHTTTTCSSH--------HHHHHHHHHHHHHHTTCHHHHHHHHHTT
T ss_pred             CHHHHHHHHHHHHHHHcCHHHHHHHHHcCCHHHHHHHHhCCCCH--------HHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            4478899999999999999999999999999999875 544443        8999999999999998899998899999


Q ss_pred             ChHHHHHhhcC-CCHHHHHHHHHHHHHhhcCChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHH
Q 015851          208 GIPPLVELLEF-TDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKE  286 (399)
Q Consensus       208 ~i~~L~~ll~~-~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~  286 (399)
                      ++|.|+.++.+ .++.++..++++|++++.+++.+...+...|+++.|+.++.++++.++..++++|++++..++..+..
T Consensus       102 ~i~~Lv~lL~~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~gi~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~  181 (264)
T d1xqra1         102 ALRKLLRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGT  181 (264)
T ss_dssp             HHHHHHHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHH
T ss_pred             chHHHHHHhhcCCCHHHHHHHHHHHHHHhccchhhHHHHHHhhhhhHHHHHHhcCchHHHHHHHHHHHHHHhccHHHHHH
Confidence            99999999965 56899999999999999988889999999999999999999999999999999999999888888899


Q ss_pred             HHHCCCcHHHHHhhcCCChHHHHHHHHHHHHhhccChhhHHHHHh
Q 015851          287 VLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQ  331 (399)
Q Consensus       287 ~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~  331 (399)
                      +.+.|+++.|+.+|.++++.++..|+++|.+++...+.....+..
T Consensus       182 ~~~~~~v~~L~~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~  226 (264)
T d1xqra1         182 LCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTDFPQGVRECRE  226 (264)
T ss_dssp             HHHTTHHHHHHHHHTSCCSTHHHHHHHHHHHHHTTCHHHHHHHHC
T ss_pred             HHHhhhHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence            999999999999999999999999999999999877766665554

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.82  E-value=7.9e-19  Score=163.46  Aligned_cols=242  Identities=19%  Similarity=0.242  Sum_probs=187.6

Q ss_pred             CChHHHHhcccCCCCcccccCCCcchHHHHHHHHHHHHHhc-CChhhHHHHHhcCcHHHHHHHHhccccCccccccHHHH
Q 015851          104 GAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVI  182 (399)
Q Consensus       104 g~l~~L~~lL~~~~~~~~~~~~~~~~~~~~~~a~~~L~~l~-~~~~~~~~i~~~~~i~~L~~~L~~~~~~~~~~~~~~~~  182 (399)
                      +.||.|+++|+++++            +++..|+++|+++| .+++++..+.+.|+++.|+++|++++.        +++
T Consensus         2 ~~ip~lv~~L~~~~~------------~~~~~a~~~l~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~--------~v~   61 (457)
T d1xm9a1           2 LTIPKAVQYLSSQDE------------KYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQ--------NVQ   61 (457)
T ss_dssp             CCHHHHHHHHHSSCT------------HHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCH--------HHH
T ss_pred             CCHHHHHHHhCCCCH------------HHHHHHHHHHHHHHcCCHHHHHHHHHCCcHHHHHHHHCCCCH--------HHH
Confidence            468999999999887            89999999999999 789999999999999999999987766        899


Q ss_pred             HHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhhcC-CCHHHHHHHHHHHHHhhcCChhhHHHHHhcCCHHHHHHhh---
Q 015851          183 RRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEF-TDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILML---  258 (399)
Q Consensus       183 ~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~-~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~L~~ll---  258 (399)
                      ..++++|.+|+.+++..+..+...|+++.++.++.+ .++.++..++++|++++. .+.........++.+.+..++   
T Consensus        62 ~~a~~aL~~L~~~~~~~~~~i~~~g~v~~li~~l~~~~~~~~~~~a~~~l~~l~~-~~~~~~~~~~~~~~~l~~~~~~~~  140 (457)
T d1xm9a1          62 QAAAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSS-TDELKEELIADALPVLADRVIIPF  140 (457)
T ss_dssp             HHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHT-SSSTHHHHHHHHHHHHHHHTTHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHCCChHHHHHHHhccCcHHHHHHHHHHHHHHHh-hhhhHHHHHhcccHHHHHHHHhhh
Confidence            999999999998888888889999999999998865 568999999999999998 455555555544333333322   


Q ss_pred             ------------cCCCHHHHHHHHHHHHHhhcCChhHHHHHHHCCCcHHHHHhhc-------------------------
Q 015851          259 ------------RSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLS-------------------------  301 (399)
Q Consensus       259 ------------~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~-------------------------  301 (399)
                                  ...++.++..+++++.+++...+.........|+++.++.+++                         
T Consensus       141 ~~~~~~~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~~~~~~~~~~~~~~~l~~~~~  220 (457)
T d1xm9a1         141 SGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSY  220 (457)
T ss_dssp             HTCC---------CCCHHHHHHHHHHHHHHTTSHHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTT
T ss_pred             hhhhcchhhhhcccccHHHHHHHHHHHHHHhcCchHHHHHHHHhccHHHHHHHHhcchhhhhhHHHHHHHHHHHHhhhhh
Confidence                        2356789999999998887553332222223344455444432                         


Q ss_pred             --------------------------------------------------------------------------CCChHH
Q 015851          302 --------------------------------------------------------------------------SCCSES  307 (399)
Q Consensus       302 --------------------------------------------------------------------------~~~~~v  307 (399)
                                                                                                ..++.+
T Consensus       221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~l~~~~~~~~~  300 (457)
T d1xm9a1         221 RLDAEVPTRYRQLEYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDAT  300 (457)
T ss_dssp             THHHHSCCHHHHHHHTC----------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHH
T ss_pred             hhHHHHHHHHHHHHhhhhhhhhHHHhhhhhhhhhHHHHHHHHhhhhHHhhhhhHHHHHHHhhcHHHHHHHHHhcccchHH
Confidence                                                                                      112455


Q ss_pred             HHHHHHHHHHhhccChh-----hHHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhccCCC
Q 015851          308 QREAALLLGQFAATDSD-----CKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQVITV  366 (399)
Q Consensus       308 ~~~a~~~L~~l~~~~~~-----~~~~l~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~  366 (399)
                      +..+.+++.+++.....     .+..+.+.|+++.|++++.++++.++..+++++++++.+..+
T Consensus       301 ~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~l~~La~~~~~  364 (457)
T d1xm9a1         301 LEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHPLL  364 (457)
T ss_dssp             HHHHHHHHHHHTTCSSSHHHHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSGGG
T ss_pred             HHHHHHHHHHHhhccccchHHHHHHHHHHcCChHHHHhhhcCccHHHHHHHHHHHHHHhhChhH
Confidence            66778888888754322     334556789999999999999999999999999999987765

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.31  E-value=5e-11  Score=114.67  Aligned_cols=295  Identities=15%  Similarity=0.133  Sum_probs=200.4

Q ss_pred             HHHHhhhhhcchhhhHHHHHHHHHHHHHHcCC--hhHHHHHHhCCChHHHHhcccCCCCcccccCCCcchHHHHHHHHHH
Q 015851           62 QVNVLNTTFSWLEADRAAAKRATHVLAELAKN--EEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFA  139 (399)
Q Consensus        62 ~~~~L~~~l~~~~~~~~~~~~a~~~L~~l~~~--~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~~~~~a~~~  139 (399)
                      +++.+...+  .+.+.++|..|+..+..++..  ........-..+++.+...+.+.+.            .+|..++.+
T Consensus       282 l~~~l~~ll--~d~~~~vr~~a~~~l~~~~~~l~~~~~~~~~~~~i~~~l~~~~~d~~~------------~vr~~~~~~  347 (588)
T d1b3ua_         282 LVPAFQNLM--KDCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDANQ------------HVKSALASV  347 (588)
T ss_dssp             HHHHHHHHH--TCSSHHHHHHHHHHHHHHHHTSCTTTHHHHHHHTHHHHHHHHHTCSCH------------HHHHHHHTT
T ss_pred             hhHHHHHHH--hccchHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHhhcCCCh------------HHHHHHHHH
Confidence            455555555  455677888888888887763  3333333445667778888776655            788888888


Q ss_pred             HHHhcCChhhHHHHHhcCcHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhhcCC
Q 015851          140 LGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFT  219 (399)
Q Consensus       140 L~~l~~~~~~~~~i~~~~~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~  219 (399)
                      +..++..-....  .....++.+...+.+.+.        +++..++..+..+...... .  ......++.+..++.+.
T Consensus       348 l~~~~~~~~~~~--~~~~l~p~l~~~l~d~~~--------~v~~~~~~~l~~~~~~~~~-~--~~~~~ll~~l~~~~~d~  414 (588)
T d1b3ua_         348 IMGLSPILGKDN--TIEHLLPLFLAQLKDECP--------EVRLNIISNLDCVNEVIGI-R--QLSQSLLPAIVELAEDA  414 (588)
T ss_dssp             GGGGHHHHCHHH--HHHHTHHHHHHHHTCSCH--------HHHHHHHTTCHHHHHHSCH-H--HHHHHHHHHHHHHHTCS
T ss_pred             HhhhhhccchhH--HHHHHHHHHHHHHHhhhh--------hhhhHHHHHHHHHHhhcch-h--hhhhHHHHHHHHHHhcc
Confidence            887762111111  112367888888876655        7888888877777643221 1  12234678889999999


Q ss_pred             CHHHHHHHHHHHHHhhcCChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHHCCCcHHHHHh
Q 015851          220 DTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGL  299 (399)
Q Consensus       220 ~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~l  299 (399)
                      ++.+|..++.++..++....   .........+.+..++.++...+|..|+++|+.++....   .......+++.+..+
T Consensus       415 ~~~~r~~~~~~l~~l~~~~~---~~~~~~~l~~~l~~~l~D~~~~VR~~A~~~L~~l~~~~~---~~~~~~~i~~~l~~~  488 (588)
T d1b3ua_         415 KWRVRLAIIEYMPLLAGQLG---VEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFG---KEWAHATIIPKVLAM  488 (588)
T ss_dssp             SHHHHHHHHHHHHHHHHHHC---GGGCCHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHC---HHHHHHHTHHHHHHT
T ss_pred             cHHHHHHHHHHHHHHHHHcC---hHhHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHhC---cHHHHHHHHHHHHHH
Confidence            99999999999998875211   111222356778888999999999999999999974311   112234478899999


Q ss_pred             hcCCChHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhccCCCCc----chhHHHH
Q 015851          300 LSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQVITVSV----LPAILIF  375 (399)
Q Consensus       300 L~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~----~~~~~~~  375 (399)
                      +.+++...|..++.++..+....+   .......++|.+++++.++.+.||..++++|..+....++..    +.+++..
T Consensus       489 ~~~~~~~~R~~~~~~l~~l~~~~~---~~~~~~~ilp~ll~~~~D~v~nVR~~a~~~l~~i~~~~~~~~~~~~i~~~l~~  565 (588)
T d1b3ua_         489 SGDPNYLHRMTTLFCINVLSEVCG---QDITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNSTLQSEVKPILEK  565 (588)
T ss_dssp             TTCSCHHHHHHHHHHHHHHHHHHH---HHHHHHHTHHHHHHGGGCSCHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHH
T ss_pred             hcCCCHHHHHHHHHHHHHHHHHcC---hHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHcCcHhHHHHHHHHHHH
Confidence            999999999999999998864211   233445589999999999999999999999999987666431    1222222


Q ss_pred             HhhccccHHHHHHHHhhh
Q 015851          376 IIINECQLEVLAFVLSEM  393 (399)
Q Consensus       376 ~~~~~~~~~~~~~~l~~~  393 (399)
                       +..+...+|..++..++
T Consensus       566 -L~~D~d~dVr~~A~~al  582 (588)
T d1b3ua_         566 -LTQDQDVDVKYFAQEAL  582 (588)
T ss_dssp             -HTTCSSHHHHHHHHHHH
T ss_pred             -HcCCCCHHHHHHHHHHH
Confidence             33455556665555443

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.26  E-value=2.6e-10  Score=109.60  Aligned_cols=264  Identities=14%  Similarity=0.139  Sum_probs=188.3

Q ss_pred             hHHHHhhhhhcchhhhHHHHHHHHHHHHHHcCC--hhHHHHHHhCCChHHHHhcccCCCCcccccCCCcchHHHHHHHHH
Q 015851           61 AQVNVLNTTFSWLEADRAAAKRATHVLAELAKN--EEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAF  138 (399)
Q Consensus        61 ~~~~~L~~~l~~~~~~~~~~~~a~~~L~~l~~~--~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~~~~~a~~  138 (399)
                      .+++.+..++  .+++..+|..|+.+|..++..  ++.    +...++|.+..+..++..            ..|..|+.
T Consensus        87 ~ll~~l~~l~--~~~~~~Vr~~a~~~l~~i~~~~~~~~----~~~~l~p~i~~L~~~~~~------------~~r~~a~~  148 (588)
T d1b3ua_          87 CLLPPLESLA--TVEETVVRDKAVESLRAISHEHSPSD----LEAHFVPLVKRLAGGDWF------------TSRTSACG  148 (588)
T ss_dssp             GGHHHHHHHT--TSSCHHHHHHHHHHHHHHHTTSCHHH----HHHTHHHHHHHHHTCSSH------------HHHHHHGG
T ss_pred             HHHHHHHHHc--cCCCHHHHHHHHHHHHHHHHhCCHHH----HHHHHHHHHHHHhcccch------------HHHHHHHH
Confidence            3445554544  455778999999999999874  222    223345555555554333            56777888


Q ss_pred             HHHHhcC--ChhhHHHHHhcCcHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhh
Q 015851          139 ALGLLAV--KPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELL  216 (399)
Q Consensus       139 ~L~~l~~--~~~~~~~i~~~~~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll  216 (399)
                      .+..+..  ++..+..     .++.+.+++++.+.        .++..++.++..++.....   .......++.+..++
T Consensus       149 ll~~~~~~~~~~~~~~-----l~~~~~~l~~D~~~--------~VR~~a~~~l~~~~~~~~~---~~~~~~l~~~l~~l~  212 (588)
T d1b3ua_         149 LFSVCYPRVSSAVKAE-----LRQYFRNLCSDDTP--------MVRRAAASKLGEFAKVLEL---DNVKSEIIPMFSNLA  212 (588)
T ss_dssp             GHHHHTTTSCHHHHHH-----HHHHHHHHHTCSCH--------HHHHHHHHHHHHHHHTSCH---HHHHHTHHHHHHHHH
T ss_pred             HHHHHHHHhhHHHHHH-----HHHHHHHHhccCCH--------HHHHHHHHHHHHHHHHhcH---HHHHHHHHHHHHHHh
Confidence            8888872  3333332     45667777776655        8999999999999964332   233456778889999


Q ss_pred             cCCCHHHHHHHHHHHHHhhcCChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHHCCCcHHH
Q 015851          217 EFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPV  296 (399)
Q Consensus       217 ~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L  296 (399)
                      .++++.+|..++.++..++...+.   .......+|.+..++.+++..+|..++.+|++++....   .......+++.+
T Consensus       213 ~d~~~~vr~~a~~~l~~i~~~~~~---~~~~~~i~~~l~~~~~D~~~~Vr~~~~~~l~~l~~~~~---~~~~~~~l~~~l  286 (588)
T d1b3ua_         213 SDEQDSVRLLAVEACVNIAQLLPQ---EDLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVG---PEITKTDLVPAF  286 (588)
T ss_dssp             TCSCHHHHTTHHHHHHHHHHHSCH---HHHHHHTHHHHHHHHTCSSHHHHHHHHHTHHHHHHHHC---HHHHHHTHHHHH
T ss_pred             cCCchhhHHHHHHHHHHhhccCCH---HHHHHHHHHHHHHhcccccHHHHHHHHHhHHHHHHHhh---hhhhhhhhhHHH
Confidence            999999999999999999863222   11223368889999999999999999999999974321   223345678999


Q ss_pred             HHhhcCCChHHHHHHHHHHHHhhccC-hhhHHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhccC
Q 015851          297 IGLLSSCCSESQREAALLLGQFAATD-SDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQVI  364 (399)
Q Consensus       297 ~~lL~~~~~~v~~~a~~~L~~l~~~~-~~~~~~l~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~  364 (399)
                      ..++.+++++++..++..+..++..- ........-..+++.+...+.+.++.++..++.++..++..-
T Consensus       287 ~~ll~d~~~~vr~~a~~~l~~~~~~l~~~~~~~~~~~~i~~~l~~~~~d~~~~vr~~~~~~l~~~~~~~  355 (588)
T d1b3ua_         287 QNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPIL  355 (588)
T ss_dssp             HHHHTCSSHHHHHHHHHHHHHHHHTSCTTTHHHHHHHTHHHHHHHHHTCSCHHHHHHHHTTGGGGHHHH
T ss_pred             HHHHhccchHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHhhcCCChHHHHHHHHHHhhhhhcc
Confidence            99999999999999999999988642 233344444567888888888889999998888888776543

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.15  E-value=3.3e-10  Score=104.61  Aligned_cols=285  Identities=10%  Similarity=0.027  Sum_probs=178.6

Q ss_pred             hhhhHHHHhhhhhcchhhhHHHHHHHHHHHHHHcCC-hhHHHHHHhCCChHHHHhcccCCCCcccccCCCcchHHHHHHH
Q 015851           58 EVSAQVNVLNTTFSWLEADRAAAKRATHVLAELAKN-EEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGS  136 (399)
Q Consensus        58 ~~~~~~~~L~~~l~~~~~~~~~~~~a~~~L~~l~~~-~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~~~~~a  136 (399)
                      .++.+++.+...+.....+...+..++.++..++.. ......-....+++.++..+.+.+.          ..+++..+
T Consensus       124 ~~~~~~~~l~~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~il~~~~~~l~~~~~----------~~~v~~~a  193 (458)
T d1ibrb_         124 QWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEP----------SNNVKLAA  193 (458)
T ss_dssp             CCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGGHHHHHHHHHHHHSTTCC----------CHHHHHHH
T ss_pred             cCcchhHHHHHHHHhhcchHHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHhccccc----------CHHHHHHH
Confidence            456677777777654555666777888888877652 1111111112346777777776544          23789999


Q ss_pred             HHHHHHhcC-ChhhHH-HHHhcCcHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHH
Q 015851          137 AFALGLLAV-KPEHQQ-LIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVE  214 (399)
Q Consensus       137 ~~~L~~l~~-~~~~~~-~i~~~~~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~  214 (399)
                      ..++..+.. .+.... ........+.+...+.+.+.        +++..++.+|..++...+..-.........+.+..
T Consensus       194 ~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--------~~~~~~~~~l~~i~~~~~~~~~~~l~~~~~~~~~~  265 (458)
T d1ibrb_         194 TNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDT--------RVRVAALQNLVKIMSLYYQYMETYMGPALFAITIE  265 (458)
T ss_dssp             HHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTCSSH--------HHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHH
T ss_pred             HHHHHHHHHhhhhhhhhHHHHHHhHhhHHHHhcCCCH--------HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence            999999883 322211 11122244555555555443        88899999999998655432111111222344556


Q ss_pred             hhcCCCHHHHHHHHHHHHHhhcCChhhH--------------------HHHHhcCCHHHHHHhhcC-------CCHHHHH
Q 015851          215 LLEFTDTKVQRAAAGALRTLAFKNDENK--------------------NQIVECNALPTLILMLRS-------EDSAIHY  267 (399)
Q Consensus       215 ll~~~~~~v~~~a~~~L~~L~~~~~~~~--------------------~~~~~~~~~~~L~~ll~~-------~~~~v~~  267 (399)
                      .+.+.++.++..++..+..++.......                    ........++.+...+.+       .+..++.
T Consensus       266 ~~~~~~~~~~~~a~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~  345 (458)
T d1ibrb_         266 AMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCK  345 (458)
T ss_dssp             HHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHH
T ss_pred             HhccccHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHhhhHHHHHHHHHHHHHHHHHhhhHHhhhhcchhhhccccccHHH
Confidence            6678889999999999888874211110                    001111234445555432       2235888


Q ss_pred             HHHHHHHHhhcCChhHHHHHHHCCCcHHHHHhhcCCChHHHHHHHHHHHHhhccC-hhhHHHHHhcCCHHHHHHhhCCCC
Q 015851          268 EAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATD-SDCKVHIVQRGAVRPLIEMLQSPD  346 (399)
Q Consensus       268 ~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~-~~~~~~l~~~g~v~~L~~ll~~~~  346 (399)
                      .+..++..++...+.....    .+++.+...++++++.+|..|+.+|+.++.+. ++....+ -..+++.++..+++++
T Consensus       346 ~a~~~l~~l~~~~~~~~~~----~l~~~i~~~l~s~~~~~r~aal~~l~~i~~~~~~~~~~~~-l~~i~~~l~~~l~d~~  420 (458)
T d1ibrb_         346 AAGVCLMLLATCCEDDIVP----HVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPL-VIQAMPTLIELMKDPS  420 (458)
T ss_dssp             HHHHHHHHHHHHTTTTHHH----HHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCTT-TTTHHHHHHHGGGCSC
T ss_pred             HHHHHHHHHHHhccHhhhh----HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcCHhHHHHH-HHHHHHHHHHHhCCCC
Confidence            8888888887543322211    24677778888999999999999999998642 2221211 2457899999999999


Q ss_pred             HHHHHHHHHHHHHhhccCC
Q 015851          347 VQLREMSAFALGRLAQVIT  365 (399)
Q Consensus       347 ~~v~~~a~~~L~~l~~~~~  365 (399)
                      +.||.+|+++|+.++...+
T Consensus       421 ~~VR~~a~~~l~~i~~~~~  439 (458)
T d1ibrb_         421 VVVRDTAAWTVGRICELLP  439 (458)
T ss_dssp             HHHHHHHHHHHHHHHHHGG
T ss_pred             HHHHHHHHHHHHHHHHHhh
Confidence            9999999999999987654

>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: Hypothetical protein YibA
species: Escherichia coli [TaxId: 562]

Probab=99.13  E-value=9.5e-09  Score=88.17  Aligned_cols=250  Identities=16%  Similarity=0.122  Sum_probs=175.2

Q ss_pred             HhhhhhcchhhhHHHHHHHHHHHHHHcCChhHHHHHHhCCChHHHHhcccCCCCcccccCCCcchHHHHHHHHHHHHHhc
Q 015851           65 VLNTTFSWLEADRAAAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA  144 (399)
Q Consensus        65 ~L~~~l~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~~~~~a~~~L~~l~  144 (399)
                      .|.+++  .+.++.+|..|+..|..+.. +         ..++.|+.++++++.            .+|..|+.+|+.+.
T Consensus        23 ~L~~~L--~d~~~~vR~~A~~~L~~~~~-~---------~~~~~l~~~l~d~~~------------~vr~~a~~aL~~l~   78 (276)
T d1oyza_          23 ELFRLL--DDHNSLKRISSARVLQLRGG-Q---------DAVRLAIEFCSDKNY------------IRRDIGAFILGQIK   78 (276)
T ss_dssp             HHHHHT--TCSSHHHHHHHHHHHHHHCC-H---------HHHHHHHHHHTCSSH------------HHHHHHHHHHHHSC
T ss_pred             HHHHHh--cCCCHHHHHHHHHHHHhhCC-H---------hHHHHHHHHHcCCCH------------HHHHHHHHHHHHhc
Confidence            445555  46788999999999988753 2         247889999988766            89999999999998


Q ss_pred             CChhhHHHHHhcCcHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhhcCCCHHHH
Q 015851          145 VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQ  224 (399)
Q Consensus       145 ~~~~~~~~i~~~~~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~  224 (399)
                      ........     .++.+...+.+..+.       .++..++.+|+.++...+....     ..++.+...+.+.++.++
T Consensus        79 ~~~~~~~~-----~~~~l~~~~l~d~~~-------~vr~~a~~aL~~~~~~~~~~~~-----~~~~~l~~~~~d~~~~vr  141 (276)
T d1oyza_          79 ICKKCEDN-----VFNILNNMALNDKSA-------CVRATAIESTAQRCKKNPIYSP-----KIVEQSQITAFDKSTNVR  141 (276)
T ss_dssp             CCTTTHHH-----HHHHHHHHHHHCSCH-------HHHHHHHHHHHHHHHHCGGGHH-----HHHHHHHHHTTCSCHHHH
T ss_pred             cccccccc-----hHHHHHHHHhcCCCh-------hHHHHHHHHHHHHccccchhhH-----HHHHHHHHHhcCcchHHH
Confidence            44333322     234444544333332       8999999999999865543222     346678888888999999


Q ss_pred             HHHHHHHHHhhcCChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHHCCCcHHHHHhhcCCC
Q 015851          225 RAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCC  304 (399)
Q Consensus       225 ~~a~~~L~~L~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~  304 (399)
                      ..++.+++.+..           ...++.+..++...+..++..+..+++.+......         ..+.++..+...+
T Consensus       142 ~~a~~~l~~~~~-----------~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~  201 (276)
T d1oyza_         142 RATAFAISVIND-----------KATIPLLINLLKDPNGDVRNWAAFAININKYDNSD---------IRDCFVEMLQDKN  201 (276)
T ss_dssp             HHHHHHHHTC--------------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCCHH---------HHHHHHHHTTCSC
T ss_pred             HHHHHHHhhcch-----------HHHHHHHHHhcccccchhhhhHHHHHHhhhccccc---------cchhhhhhhhhhh
Confidence            988888776542           34678889999999999999999999888654333         2445677778888


Q ss_pred             hHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhccCCCCcchhHHHHHhhccccHH
Q 015851          305 SESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQVITVSVLPAILIFIIINECQLE  384 (399)
Q Consensus       305 ~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~  384 (399)
                      ..++..+..++..+-  .         ...++.|++.+.+  +.++..++++|+.+..   ...+|.+...+...+ ..+
T Consensus       202 ~~~~~~~~~al~~~~--~---------~~~~~~L~~~l~d--~~vr~~a~~aL~~ig~---~~~~~~L~~~l~~~~-d~~  264 (276)
T d1oyza_         202 EEVRIEAIIGLSYRK--D---------KRVLSVLCDELKK--NTVYDDIIEAAGELGD---KTLLPVLDTMLYKFD-DNE  264 (276)
T ss_dssp             HHHHHHHHHHHHHTT--C---------GGGHHHHHHHHTS--SSCCHHHHHHHHHHCC---GGGHHHHHHHHTTSS-CCH
T ss_pred             hhhhhhhccccchhh--h---------hhhHHHHHHHhCC--hHHHHHHHHHHHHcCC---HHHHHHHHHHHccCC-CHH
Confidence            899999999888763  2         2357788888864  4588899999998863   345676666553322 334


Q ss_pred             HHHHHHhh
Q 015851          385 VLAFVLSE  392 (399)
Q Consensus       385 ~~~~~l~~  392 (399)
                      ++..++..
T Consensus       265 vr~~A~~~  272 (276)
T d1oyza_         265 IITSAIDK  272 (276)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            55555443

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin beta2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.95  E-value=6.7e-09  Score=104.60  Aligned_cols=282  Identities=14%  Similarity=0.139  Sum_probs=170.3

Q ss_pred             hhhHHHHhhhhhcchhhhHHHHHHHHHHHHHHcCC-hhHHHHHHhCCChHHHHhcccCCCCcccccCCCcchHHHHHHHH
Q 015851           59 VSAQVNVLNTTFSWLEADRAAAKRATHVLAELAKN-EEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSA  137 (399)
Q Consensus        59 ~~~~~~~L~~~l~~~~~~~~~~~~a~~~L~~l~~~-~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~~~~~a~  137 (399)
                      .+.+++.+.+.+  .+++...|..|+.+|+.++.+ .+.....+ ..+++.++..++++++            .+|..++
T Consensus       393 l~~~l~~l~~~l--~s~~~~~reaa~~alg~i~eg~~~~~~~~l-~~li~~l~~~l~d~~~------------~Vr~~a~  457 (888)
T d1qbkb_         393 LPHILPLLKELL--FHHEWVVKESGILVLGAIAEGCMQGMIPYL-PELIPHLIQCLSDKKA------------LVRSITC  457 (888)
T ss_dssp             HHHHHHHHHHTT--TSSSHHHHHHHHHHHHHHTTTSHHHHTTTH-HHHHHHHHHHTTSSCH------------HHHHHHH
T ss_pred             HHHHHHHHHHhh--ccchhHHHHHHHHHhhhhhhhHHHHhcccc-hhhhHHHHHhccCCCH------------HHHHHHH
Confidence            344566666655  456778899999999999875 32221111 2357788888877665            8899999


Q ss_pred             HHHHHhcC--ChhhHHHHHhcCcHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhhcCc-hhHHHHHhcCChHHHHH
Q 015851          138 FALGLLAV--KPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENS-SIKTRVRMEGGIPPLVE  214 (399)
Q Consensus       138 ~~L~~l~~--~~~~~~~i~~~~~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~-~~~~~~~~~~~i~~L~~  214 (399)
                      |+|+.++.  .+...... -...++.++..+.+.+.        .++..++++|.+++.... .....  -...++.++.
T Consensus       458 ~~l~~~~~~~~~~~~~~~-~~~~l~~ll~~l~d~~~--------~V~~~a~~al~~l~~~~~~~l~p~--~~~il~~l~~  526 (888)
T d1qbkb_         458 WTLSRYAHWVVSQPPDTY-LKPLMTELLKRILDSNK--------RVQEAACSAFATLEEEACTELVPY--LAYILDTLVF  526 (888)
T ss_dssp             HHHHHTHHHHHSSCHHHH-TTTHHHHHHHHHSSSCH--------HHHHHHHHHHHHHHHHHTTSSGGG--HHHHHHHHHH
T ss_pred             HHHHHHHHHhhhhhhhhh-hhhhHHHHHHHhcCCCH--------HHHHHHHHHHHHHHHHhhhhhhhH--HHHHHHHHHH
Confidence            99999882  12222222 23477778887776655        899999999999985221 11111  1234566777


Q ss_pred             hhcCCCHHHHHHHHHHHHHhhcC------ChhhHHHHH-------------------------------hcCCHH-----
Q 015851          215 LLEFTDTKVQRAAAGALRTLAFK------NDENKNQIV-------------------------------ECNALP-----  252 (399)
Q Consensus       215 ll~~~~~~v~~~a~~~L~~L~~~------~~~~~~~~~-------------------------------~~~~~~-----  252 (399)
                      .+.......+..+..++..++..      .+.....+.                               ..++.|     
T Consensus       527 ~l~~~~~~~~~~~~~al~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~le~l~~i~~~~~~~~~~~~~~~  606 (888)
T d1qbkb_         527 AFSKYQHKNLLILYDAIGTLADSVGHHLNKPEYIQMLMPPLIQKWNMLKDEDKDLFPLLECLSSVATALQSGFLPYCEPV  606 (888)
T ss_dssp             HTTTCCHHHHHHHHHHHHHHHHHHGGGGCSHHHHHHHHHHHHHHHTTSCTTCTTHHHHHHHHHHHHHHSTTTTHHHHHHH
T ss_pred             HHhhhhHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhHHHHhhhHHHH
Confidence            77776666665555555555421      011111000                               011111     


Q ss_pred             --HHHHhhc-----------------CCCHHHHHHHHHHHHHhhcCChhHHHH-HHHCCCcHHHHHhhcCCChHHHHHHH
Q 015851          253 --TLILMLR-----------------SEDSAIHYEAVGVIGNLVHSSPNIKKE-VLAAGALQPVIGLLSSCCSESQREAA  312 (399)
Q Consensus       253 --~L~~ll~-----------------~~~~~v~~~a~~~L~~l~~~~~~~~~~-~~~~~~l~~L~~lL~~~~~~v~~~a~  312 (399)
                        .++.++.                 ..+.++...++.+++.++......... +.....++.+...+++.++.++..|.
T Consensus       607 ~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~vr~~a~  686 (888)
T d1qbkb_         607 YQRCVNLVQKTLAQAMLNNAQPDQYEAPDKDFMIVALDLLSGLAEGLGGNIEQLVARSNILTLMYQCMQDKMPEVRQSSF  686 (888)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHCTTTSCCCCTHHHHHHHHHHHHHHHHHTTTTHHHHHTSCHHHHHHHHHTCSSHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHHHHhhhhhhhhhhHhhHHHHHHHHhCCCChHHHHHHH
Confidence              0111110                 112344444555555554321111122 22345677778888889999999999


Q ss_pred             HHHHHhhccChhhHHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhccCCCC
Q 015851          313 LLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQVITVS  367 (399)
Q Consensus       313 ~~L~~l~~~~~~~~~~l~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~  367 (399)
                      .+++.++...........+ .+++.+..-+.++...++.+|+++++.++...+..
T Consensus       687 ~llgdl~~~~~~~~~~~l~-~~~~~l~~~L~~~~~~v~~~a~~~ig~ia~~~~~~  740 (888)
T d1qbkb_         687 ALLGDLTKACFQHVKPCIA-DFMPILGTNLNPEFISVCNNATWAIGEISIQMGIE  740 (888)
T ss_dssp             HHHHHHHHHCGGGTGGGHH-HHHHHHHHTCCGGGHHHHHHHHHHHHHHHHHTGGG
T ss_pred             HHHHHHHHhhhHHHHHHHH-HHHHHHHHHhCcCCHHHHHHHHHHHHHHHHHHHHH
Confidence            9999888654443322222 25778888888888999999999999999887655

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin beta2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.90  E-value=4.7e-09  Score=105.74  Aligned_cols=284  Identities=17%  Similarity=0.142  Sum_probs=165.8

Q ss_pred             hhhhHHHHhhhhhcchhhhHHHHHHHHHHHHHHcCC-hhHHHHHHhCCChHHHHhcccCCCCcccccCCCcchHHHHHHH
Q 015851           58 EVSAQVNVLNTTFSWLEADRAAAKRATHVLAELAKN-EEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGS  136 (399)
Q Consensus        58 ~~~~~~~~L~~~l~~~~~~~~~~~~a~~~L~~l~~~-~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~~~~~a  136 (399)
                      ..+.+++.|...+  .++++.+|..|+|+|+.++.. ......-.-...++.++..+.+++.            .++..|
T Consensus       433 ~l~~li~~l~~~l--~d~~~~Vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~ll~~l~d~~~------------~V~~~a  498 (888)
T d1qbkb_         433 YLPELIPHLIQCL--SDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNK------------RVQEAA  498 (888)
T ss_dssp             THHHHHHHHHHHT--TSSCHHHHHHHHHHHHHTHHHHHSSCHHHHTTTHHHHHHHHHSSSCH------------HHHHHH
T ss_pred             cchhhhHHHHHhc--cCCCHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHhcCCCH------------HHHHHH
Confidence            3455666666666  567888999999999998763 1111111234677888887776655            788999


Q ss_pred             HHHHHHhcC--ChhhHHHHHhcCcHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhhc------CchhHHHH-----
Q 015851          137 AFALGLLAV--KPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHE------NSSIKTRV-----  203 (399)
Q Consensus       137 ~~~L~~l~~--~~~~~~~i~~~~~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~------~~~~~~~~-----  203 (399)
                      +++|.+++.  .+.....+  ...++.++..+.....        .....+..++..++..      .+.....+     
T Consensus       499 ~~al~~l~~~~~~~l~p~~--~~il~~l~~~l~~~~~--------~~~~~~~~al~~l~~~~~~~~~~~~~~~~l~~~l~  568 (888)
T d1qbkb_         499 CSAFATLEEEACTELVPYL--AYILDTLVFAFSKYQH--------KNLLILYDAIGTLADSVGHHLNKPEYIQMLMPPLI  568 (888)
T ss_dssp             HHHHHHHHHHHTTSSGGGH--HHHHHHHHHHTTTCCH--------HHHHHHHHHHHHHHHHHGGGGCSHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhhhhhhHH--HHHHHHHHHHHhhhhH--------HHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHH
Confidence            999999882  22211111  1133444444443332        2222223333333210      00000000     


Q ss_pred             -----------------------H---hcCChH-------HHHHhh-----------------cCCCHHHHHHHHHHHHH
Q 015851          204 -----------------------R---MEGGIP-------PLVELL-----------------EFTDTKVQRAAAGALRT  233 (399)
Q Consensus       204 -----------------------~---~~~~i~-------~L~~ll-----------------~~~~~~v~~~a~~~L~~  233 (399)
                                             .   ..+..+       .++..+                 ...+..+...++.++..
T Consensus       569 ~~~~~~~~~~~~~~~~le~l~~i~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~  648 (888)
T d1qbkb_         569 QKWNMLKDEDKDLFPLLECLSSVATALQSGFLPYCEPVYQRCVNLVQKTLAQAMLNNAQPDQYEAPDKDFMIVALDLLSG  648 (888)
T ss_dssp             HHHTTSCTTCTTHHHHHHHHHHHHHHSTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTSCCCCTHHHHHHHHHHHH
T ss_pred             HHHHhcccchHHHHHHHHHHHHHHHHhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHH
Confidence                                   0   001111       111111                 11233445555555555


Q ss_pred             hhcCChhhHHHH-HhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHHCCCcHHHHHhhcCCChHHHHHHH
Q 015851          234 LAFKNDENKNQI-VECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAA  312 (399)
Q Consensus       234 L~~~~~~~~~~~-~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~  312 (399)
                      +..........+ .....++.+...+++.+++++..|..+++.++........... ..+++.++..|.++...++.+|+
T Consensus       649 l~~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~vr~~a~~llgdl~~~~~~~~~~~l-~~~~~~l~~~L~~~~~~v~~~a~  727 (888)
T d1qbkb_         649 LAEGLGGNIEQLVARSNILTLMYQCMQDKMPEVRQSSFALLGDLTKACFQHVKPCI-ADFMPILGTNLNPEFISVCNNAT  727 (888)
T ss_dssp             HHHHHTTTTHHHHHTSCHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTGGGH-HHHHHHHHHTCCGGGHHHHHHHH
T ss_pred             HHHHhhhhhhhhhhHhhHHHHHHHHhCCCChHHHHHHHHHHHHHHHhhhHHHHHHH-HHHHHHHHHHhCcCCHHHHHHHH
Confidence            554322222333 3345678888899999999999999999999864433321111 23567777888888889999999


Q ss_pred             HHHHHhhccChhhHHHHHhcCCHHHHHHhhCCC--CHHHHHHHHHHHHHhhccCCCC
Q 015851          313 LLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSP--DVQLREMSAFALGRLAQVITVS  367 (399)
Q Consensus       313 ~~L~~l~~~~~~~~~~l~~~g~v~~L~~ll~~~--~~~v~~~a~~~L~~l~~~~~~~  367 (399)
                      |+++.++....+....++ ..+++.|+.+++++  +..++++++.+|+.++...++.
T Consensus       728 ~~ig~ia~~~~~~~~py~-~~il~~L~~il~~~~~~~~v~~n~~~~lgrl~~~~p~~  783 (888)
T d1qbkb_         728 WAIGEISIQMGIEMQPYI-PMVLHQLVEIINRPNTPKTLLENTAITIGRLGYVCPQE  783 (888)
T ss_dssp             HHHHHHHHHTGGGGGGGS-HHHHHHHHHHHTCTTCCHHHHHHHHHHHHHHHHHCHHH
T ss_pred             HHHHHHHHHHHHHhhhhH-HHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHHHCHHH
Confidence            999999865443333222 24678888999753  4668999999999999877653

>d1ho8a_ a.118.1.9 (A:) Regulatory subunit H of the V-type ATPase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Regulatory subunit H of the V-type ATPase
domain: Regulatory subunit H of the V-type ATPase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.78  E-value=6.7e-07  Score=80.26  Aligned_cols=275  Identities=16%  Similarity=0.106  Sum_probs=179.5

Q ss_pred             hhHHHHHHHHHHHHHHcCC-hhHHH---HHHhCCChHHHHhcccCCCCcccccCCCcchHHHHHHHHHHHHHhcCChhhH
Q 015851           75 ADRAAAKRATHVLAELAKN-EEVVN---WIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQ  150 (399)
Q Consensus        75 ~~~~~~~~a~~~L~~l~~~-~~~~~---~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~  150 (399)
                      ++......+...+..++.. .....   .+..  ....+-.+....+.            +.+..++.++..+...+++|
T Consensus       134 ~d~~~~~~s~~i~~ll~~~~~~~~~~~e~l~~--~~~~l~~l~~~~~~------------~~~~i~v~~lq~llr~~~~R  199 (477)
T d1ho8a_         134 DFQTVLISGFNVVSLLVQNGLHNVKLVEKLLK--NNNLINILQNIEQM------------DTCYVCIRLLQELAVIPEYR  199 (477)
T ss_dssp             SHHHHHHHHHHHHHHHTSTTTCCHHHHHHHHH--CHHHHHHHHCTTCH------------HHHHHHHHHHHHHHTSHHHH
T ss_pred             chhHHHHHHHHHHHHHHhccccccchHHHHHH--hhHHHHHhhccccc------------chHHHHHHHHHHHhcCccHH
Confidence            4566677777777777763 22222   2211  22222233233333            66778889999999999999


Q ss_pred             HHHHh--cCcHHHHHHHHhccccCc---------cccccHHHHHHHHHHHHHHhhcCchhHHHHHhc--CChHHHHHhhc
Q 015851          151 QLIVD--NGALSHLVNLLKRHMDSN---------CSRAVNSVIRRAADAITNLAHENSSIKTRVRME--GGIPPLVELLE  217 (399)
Q Consensus       151 ~~i~~--~~~i~~L~~~L~~~~~~~---------~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~--~~i~~L~~ll~  217 (399)
                      ..+..  ...++.+++.|.......         .....+.++..++.++|-|+. ++.....+...  +.++.++.+++
T Consensus       200 ~~fw~~~~~~~~~l~~il~~a~~~~~~~~~~~~~~~~~~~Ql~Y~~ll~lWlLSF-~~~~~~~l~~~~~~~i~~l~~i~~  278 (477)
T d1ho8a_         200 DVIWLHEKKFMPTLFKILQRATDSQLATRIVATNSNHLGIQLQYHSLLLIWLLTF-NPVFANELVQKYLSDFLDLLKLVK  278 (477)
T ss_dssp             HHHHTTHHHHHHHHHHHHHHHHC-------------CCHHHHHHHHHHHHHHHTT-SHHHHHHHHTTSHHHHHHHHHHHH
T ss_pred             HHHHHcccchHHHHHHHHHHHhcccccchhhcccCCCccHHHHHHHHHHHHHHHc-CHHHHHHHHHhhhHHHHHHHHHHH
Confidence            98853  446788888886532211         111235889999999999995 55444445444  34788888886


Q ss_pred             C-CCHHHHHHHHHHHHHhhcCChh-----hHHHHHhcCCHHHHHHhhcC--CCHHHHHHHHHHH-------HHhh-----
Q 015851          218 F-TDTKVQRAAAGALRTLAFKNDE-----NKNQIVECNALPTLILMLRS--EDSAIHYEAVGVI-------GNLV-----  277 (399)
Q Consensus       218 ~-~~~~v~~~a~~~L~~L~~~~~~-----~~~~~~~~~~~~~L~~ll~~--~~~~v~~~a~~~L-------~~l~-----  277 (399)
                      . ..+++.+.++.+|.|++.....     ....++..++++.+-.+...  .|+++....-..-       ..++     
T Consensus       279 ~s~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~v~~~~l~~l~~L~~r~~~Dedl~edl~~L~~~L~~~~k~lTsfd~Y  358 (477)
T d1ho8a_         279 ITIKEKVSRLCISIILQCCSTRVKQHKKVIKQLLLLGNALPTVQSLSERKYSDEELRQDISNLKEILENEYQELTSFDEY  358 (477)
T ss_dssp             HCCSHHHHHHHHHHHHHTTSSSSTTHHHHHHHHHHHHCHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHHHHHTCCHHHHH
T ss_pred             hhhHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHcchhHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhcCcHHHH
Confidence            5 4589999999999999963221     23345566666655444433  4665544322211       1111     


Q ss_pred             ---------cCChhHH-HHHHHC----------CCcHHHHHhhc----------CCChHHHHHHHHHHHHhhccChhhHH
Q 015851          278 ---------HSSPNIK-KEVLAA----------GALQPVIGLLS----------SCCSESQREAALLLGQFAATDSDCKV  327 (399)
Q Consensus       278 ---------~~~~~~~-~~~~~~----------~~l~~L~~lL~----------~~~~~v~~~a~~~L~~l~~~~~~~~~  327 (399)
                               ..+|..+ ..+...          ..+..|+++|.          +.++.+..-||.=|+.++...|.++.
T Consensus       359 ~~Ev~Sg~L~WSP~H~se~FW~EN~~kf~e~~~~llk~L~~lL~~~~~~~~~~~s~D~~~lAVAc~DiGefvr~~P~gr~  438 (477)
T d1ho8a_         359 VAELDSKLLCWSPPHVDNGFWSDNIDEFKKDNYKIFRQLIELLQAKVRNGDVNAKQEKIIIQVALNDITHVVELLPESID  438 (477)
T ss_dssp             HHHHHHTCCCCCGGGGCHHHHHHHSGGGSSGGGHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHHCTTHHH
T ss_pred             HHHHhcCCCCCCCCcCChhHHHHHHHhhcccchHHHHHHHHHHhhcccccccccCCCcceeehhhhhHHHHHHHCcchhH
Confidence                     1112221 122211          25788899986          23556777899999999999999999


Q ss_pred             HHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhccC
Q 015851          328 HIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQVI  364 (399)
Q Consensus       328 ~l~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~  364 (399)
                      .+-+.|+=..+.+++.++|++|+..|..|+..+..+.
T Consensus       439 il~~lg~K~~vM~Lm~h~d~~Vr~eAL~avQklm~~n  475 (477)
T d1ho8a_         439 VLDKTGGKADIMELLNHSDSRVKYEALKATQAIIGYT  475 (477)
T ss_dssp             HHHHHSHHHHHHHHTSCSSHHHHHHHHHHHHHHHHHS
T ss_pred             HHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHHhc
Confidence            9999999999999999999999999999999887543

>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: Hypothetical protein YibA
species: Escherichia coli [TaxId: 562]

Probab=98.72  E-value=3e-06  Score=71.91  Aligned_cols=211  Identities=14%  Similarity=0.039  Sum_probs=153.2

Q ss_pred             hCCChHHHHhcccCCCCcccccCCCcchHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHHHhccccCccccccHHH
Q 015851          102 EGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSV  181 (399)
Q Consensus       102 ~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~~~i~~L~~~L~~~~~~~~~~~~~~~  181 (399)
                      +....+.|+++|+++++            .+|..|+.+|+.+..          ...++.++.++++.+.        .+
T Consensus        17 ~~~~~~~L~~~L~d~~~------------~vR~~A~~~L~~~~~----------~~~~~~l~~~l~d~~~--------~v   66 (276)
T d1oyza_          17 KKLNDDELFRLLDDHNS------------LKRISSARVLQLRGG----------QDAVRLAIEFCSDKNY--------IR   66 (276)
T ss_dssp             HTSCHHHHHHHTTCSSH------------HHHHHHHHHHHHHCC----------HHHHHHHHHHHTCSSH--------HH
T ss_pred             ccCCHHHHHHHhcCCCH------------HHHHHHHHHHHhhCC----------HhHHHHHHHHHcCCCH--------HH
Confidence            34556778899998776            899999999998863          1257899999987665        89


Q ss_pred             HHHHHHHHHHHhhcCchhHHHHHhcCChHHH-HHhhcCCCHHHHHHHHHHHHHhhcCChhhHHHHHhcCCHHHHHHhhcC
Q 015851          182 IRRAADAITNLAHENSSIKTRVRMEGGIPPL-VELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRS  260 (399)
Q Consensus       182 ~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L-~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~L~~ll~~  260 (399)
                      +..++.+|..+.........      .++.+ ..+++++++.++..++.+|+++....+....     ..++.+...+.+
T Consensus        67 r~~a~~aL~~l~~~~~~~~~------~~~~l~~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~~-----~~~~~l~~~~~d  135 (276)
T d1oyza_          67 RDIGAFILGQIKICKKCEDN------VFNILNNMALNDKSACVRATAIESTAQRCKKNPIYSP-----KIVEQSQITAFD  135 (276)
T ss_dssp             HHHHHHHHHHSCCCTTTHHH------HHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGGGHH-----HHHHHHHHHTTC
T ss_pred             HHHHHHHHHHhccccccccc------hHHHHHHHHhcCCChhHHHHHHHHHHHHccccchhhH-----HHHHHHHHHhcC
Confidence            99999999998743322111      12223 3346788899999999999999864433222     346778888888


Q ss_pred             CCHHHHHHHHHHHHHhhcCChhHHHHHHHCCCcHHHHHhhcCCChHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHH
Q 015851          261 EDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIE  340 (399)
Q Consensus       261 ~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~v~~L~~  340 (399)
                      +++.++..++.+++.+..           ...++.+..++...+..++..+..++.+.......         ..+.+..
T Consensus       136 ~~~~vr~~a~~~l~~~~~-----------~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~  195 (276)
T d1oyza_         136 KSTNVRRATAFAISVIND-----------KATIPLLINLLKDPNGDVRNWAAFAININKYDNSD---------IRDCFVE  195 (276)
T ss_dssp             SCHHHHHHHHHHHHTC--------------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCCHH---------HHHHHHH
T ss_pred             cchHHHHHHHHHHhhcch-----------HHHHHHHHHhcccccchhhhhHHHHHHhhhccccc---------cchhhhh
Confidence            999999999988876631           24577888888888889998888888887644322         2455777


Q ss_pred             hhCCCCHHHHHHHHHHHHHhhccCCCCcchhHHHHH
Q 015851          341 MLQSPDVQLREMSAFALGRLAQVITVSVLPAILIFI  376 (399)
Q Consensus       341 ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~  376 (399)
                      .+.+.+..++..+..++..+...   ..+|.+...+
T Consensus       196 ~~~~~~~~~~~~~~~al~~~~~~---~~~~~L~~~l  228 (276)
T d1oyza_         196 MLQDKNEEVRIEAIIGLSYRKDK---RVLSVLCDEL  228 (276)
T ss_dssp             HTTCSCHHHHHHHHHHHHHTTCG---GGHHHHHHHH
T ss_pred             hhhhhhhhhhhhhccccchhhhh---hhHHHHHHHh
Confidence            78888999999999998877532   3456655544

>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.68  E-value=8.5e-07  Score=88.12  Aligned_cols=286  Identities=10%  Similarity=0.043  Sum_probs=176.9

Q ss_pred             hhhhHHHHhhhhhcchhhhHHHHHHHHHHHHHHcCC--hhHHHHHHhCCChHHHHhcccCCCCcccccCCCcchHHHHHH
Q 015851           58 EVSAQVNVLNTTFSWLEADRAAAKRATHVLAELAKN--EEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKG  135 (399)
Q Consensus        58 ~~~~~~~~L~~~l~~~~~~~~~~~~a~~~L~~l~~~--~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~~~~~  135 (399)
                      .|+.+++.|.+.+..++.....+..++.+|..++.+  ++.... ....+++.+++.+.+.+.          ..+++..
T Consensus       125 ~Wpeli~~L~~~l~~~~~~~~~~~~~l~~l~~i~~~~~~~~~~~-~~~~il~~i~~~l~~~~~----------~~~v~~~  193 (876)
T d1qgra_         125 QWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQD-KSNEILTAIIQGMRKEEP----------SNNVKLA  193 (876)
T ss_dssp             CCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCHHHHGG-GHHHHHHHHHHHHSTTCS----------CHHHHHH
T ss_pred             ccHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHCCHHHHHH-HHHHHHHHHHHHHcCcCc----------cHHHHHH
Confidence            467888888887765555567788899999988753  222111 112457778887776544          2378889


Q ss_pred             HHHHHHHhc-CChhhHH-HHHhcCcHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHH
Q 015851          136 SAFALGLLA-VKPEHQQ-LIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLV  213 (399)
Q Consensus       136 a~~~L~~l~-~~~~~~~-~i~~~~~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~  213 (399)
                      +..++.+.. ....... .....-.++.+...+...+.        +++..++.+|..++...+..-.........+.+.
T Consensus       194 a~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~--------~v~~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~  265 (876)
T d1qgra_         194 ATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDT--------RVRVAALQNLVKIMSLYYQYMETYMGPALFAITI  265 (876)
T ss_dssp             HHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHTTCSSH--------HHHHHHHHHHHHHHHHSGGGCHHHHTTTHHHHHH
T ss_pred             HHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhcCCCH--------HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence            999998876 2222111 11111134445555554433        8889999999999865554322233334455666


Q ss_pred             HhhcCCCHHHHHHHHHHHHHhhcCChhhHH--------------------HHHhcCCHHHHHHhhcC-------CCHHHH
Q 015851          214 ELLEFTDTKVQRAAAGALRTLAFKNDENKN--------------------QIVECNALPTLILMLRS-------EDSAIH  266 (399)
Q Consensus       214 ~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~--------------------~~~~~~~~~~L~~ll~~-------~~~~v~  266 (399)
                      ..+.+.++.++..++..+..++........                    .......++.+...+..       ++..++
T Consensus       266 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~  345 (876)
T d1qgra_         266 EAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPC  345 (876)
T ss_dssp             HHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCCHH
T ss_pred             HHhccccHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhhHHHHHHHHHHHHHHHHHHhhHHHHHhcccccccccchHH
Confidence            677788888988888887777642111100                    01111233444444432       122477


Q ss_pred             HHHHHHHHHhhcCChhHHHHHHHCCCcHHHHHhhcCCChHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHhhCCCC
Q 015851          267 YEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPD  346 (399)
Q Consensus       267 ~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~v~~L~~ll~~~~  346 (399)
                      ..|..++..++.........    .+++.+...+.++++..+..++.+++.+..+.......-....+++.+...+.+++
T Consensus       346 ~~a~~~l~~l~~~~~~~~~~----~~~~~i~~~l~~~~~~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~d~~  421 (876)
T d1qgra_         346 KAAGVCLMLLATCCEDDIVP----HVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPS  421 (876)
T ss_dssp             HHHHHHHHHHHHHHGGGGHH----HHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHHHTCSS
T ss_pred             HHHHHHHHHHHHHhhhhhhh----hhHHHHHHhhccchHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhhcCCc
Confidence            77888887776432221111    13455666677888899999999999987643222222222346889999999999


Q ss_pred             HHHHHHHHHHHHHhhccCCC
Q 015851          347 VQLREMSAFALGRLAQVITV  366 (399)
Q Consensus       347 ~~v~~~a~~~L~~l~~~~~~  366 (399)
                      +.++..+.++++.++...++
T Consensus       422 ~~vr~~a~~~l~~~~~~~~~  441 (876)
T d1qgra_         422 VVVRDTAAWTVGRICELLPE  441 (876)
T ss_dssp             HHHHHHHHHHHHHHHHHCGG
T ss_pred             cHHHHHHHHHHHHHHHHcch
Confidence            99999999999999986553

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.64  E-value=1.8e-07  Score=85.71  Aligned_cols=238  Identities=16%  Similarity=0.146  Sum_probs=146.7

Q ss_pred             hhHHHHhhhhhcchhhhHHHHHHHHHHHHHHcCC-hhHHH-HHHhCCChHHHHhcccCCCCcccccCCCcchHHHHHHHH
Q 015851           60 SAQVNVLNTTFSWLEADRAAAKRATHVLAELAKN-EEVVN-WIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSA  137 (399)
Q Consensus        60 ~~~~~~L~~~l~~~~~~~~~~~~a~~~L~~l~~~-~~~~~-~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~~~~~a~  137 (399)
                      ..+++.+...+...+.+..++..|+.++..+... +.... ........+.+..++.+++.            +++..+.
T Consensus       170 ~~il~~~~~~l~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~------------~~~~~~~  237 (458)
T d1ibrb_         170 NEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDT------------RVRVAAL  237 (458)
T ss_dssp             HHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTCSSH------------HHHHHHH
T ss_pred             HHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhHhhHHHHhcCCCH------------HHHHHHH
Confidence            3445555555543445667899999999998874 22211 22233456667777766554            8899999


Q ss_pred             HHHHHhc-CChhhHHHHHhcCcHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhhcCchhH----------------
Q 015851          138 FALGLLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIK----------------  200 (399)
Q Consensus       138 ~~L~~l~-~~~~~~~~i~~~~~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~----------------  200 (399)
                      .+|..++ ..+..-...........+...+.+..+        +++..++..+..++.......                
T Consensus       238 ~~l~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~--------~~~~~a~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~  309 (458)
T d1ibrb_         238 QNLVKIMSLYYQYMETYMGPALFAITIEAMKSDID--------EVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHT  309 (458)
T ss_dssp             HHHHHHHHHCGGGCTTTTTTTHHHHHHHHHHCSSH--------HHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCC
T ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHHHHHHhccccH--------HHHHHHHHHHHHHHHHHHHHHHhhhhHHHhhhHHHHH
Confidence            9999998 444322111112222333444444433        777888888888763211100                


Q ss_pred             ----HHHHhcCChHHHHHhhcC-------CCHHHHHHHHHHHHHhhcCChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHH
Q 015851          201 ----TRVRMEGGIPPLVELLEF-------TDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEA  269 (399)
Q Consensus       201 ----~~~~~~~~i~~L~~ll~~-------~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a  269 (399)
                          ........++.+...+.+       .+..++..+..++..++...++.   +.. .+++.+...+++++..+|..|
T Consensus       310 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~---~~~-~l~~~i~~~l~s~~~~~r~aa  385 (458)
T d1ibrb_         310 SKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDD---IVP-HVLPFIKEHIKNPDWRYRDAA  385 (458)
T ss_dssp             CCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTTT---HHH-HHHHHHHHHTTCSSHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhHHhhhhcchhhhccccccHHHHHHHHHHHHHHhccHh---hhh-HHHHHHHHHhcCCCHHHHHHH
Confidence                001111223444444432       23457888888888888633321   122 256777788889999999999


Q ss_pred             HHHHHHhhcCChhHHHHHHHCCCcHHHHHhhcCCChHHHHHHHHHHHHhhcc
Q 015851          270 VGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAAT  321 (399)
Q Consensus       270 ~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~  321 (399)
                      +.+|+.++.+.......-.-..+++.++..++++++.+|..|+++|+.++..
T Consensus       386 l~~l~~i~~~~~~~~~~~~l~~i~~~l~~~l~d~~~~VR~~a~~~l~~i~~~  437 (458)
T d1ibrb_         386 VMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICEL  437 (458)
T ss_dssp             HHHHHHTSSSSCTTTTCTTTTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCHhHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHH
Confidence            9999999854221111112245788999999999999999999999999754

>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: MTH187
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=98.55  E-value=1.7e-08  Score=73.87  Aligned_cols=109  Identities=23%  Similarity=0.228  Sum_probs=87.7

Q ss_pred             hcCCCHHHHHHHHHHHHHhhcCChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHHCCCcHH
Q 015851          216 LEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQP  295 (399)
Q Consensus       216 l~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~  295 (399)
                      |+++++.+|..|+++|+.+..            ..++.|+..|.++++.+|..|+++|+++.  .+.         .++.
T Consensus         1 L~D~~~~VR~~A~~aL~~~~~------------~~~~~L~~~l~d~~~~vR~~a~~~L~~~~--~~~---------~~~~   57 (111)
T d1te4a_           1 MADENKWVRRDVSTALSRMGD------------EAFEPLLESLSNEDWRIRGAAAWIIGNFQ--DER---------AVEP   57 (111)
T ss_dssp             CCSSCCCSSSSCCSSTTSCSS------------TTHHHHHHGGGCSCHHHHHHHHHHHGGGC--SHH---------HHHH
T ss_pred             CCCcCHHHHHHHHHHHHHhCH------------HHHHHHHHHHcCCCHHHHHHHHHHHHhcc--hhh---------hHHH
Confidence            456677778777777765432            35788999999999999999999999874  222         3688


Q ss_pred             HHHhhcCCChHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHH
Q 015851          296 VIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALG  358 (399)
Q Consensus       296 L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~v~~L~~ll~~~~~~v~~~a~~~L~  358 (399)
                      |+.+|.++++.++..|+++|+.+.  ++         +.++.|..++.++++.+|..|..+|.
T Consensus        58 L~~~l~d~~~~VR~~a~~aL~~i~--~~---------~~~~~L~~ll~d~~~~vr~~A~~aL~  109 (111)
T d1te4a_          58 LIKLLEDDSGFVRSGAARSLEQIG--GE---------RVRAAMEKLAETGTGFARKVAVNYLE  109 (111)
T ss_dssp             HHHHHHHCCTHHHHHHHHHHHHHC--SH---------HHHHHHHHHTTSCCTHHHHHHHHHGG
T ss_pred             HHhhhccchhHHHHHHHHHHHHhC--cc---------chHHHHHHHHcCCCHHHHHHHHHHHH
Confidence            999999999999999999999883  22         24778888999999999999998874

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.54  E-value=6.1e-07  Score=92.81  Aligned_cols=248  Identities=14%  Similarity=0.123  Sum_probs=164.6

Q ss_pred             hHHHHHHHHHHHHHHcCC--hhHHHHHHhCCChHHHHhcccCCCCcccccCCCcchHHHHHHHHHHHHHhc-CChhhHHH
Q 015851           76 DRAAAKRATHVLAELAKN--EEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA-VKPEHQQL  152 (399)
Q Consensus        76 ~~~~~~~a~~~L~~l~~~--~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~~~~~a~~~L~~l~-~~~~~~~~  152 (399)
                      ....+..|+.+|+.+...  ....     ....+.+++.+.+++.            ++|..|..+|++++ .+..    
T Consensus       828 ~~~~~~~al~~Lge~~~~~~~~~~-----~~l~~~l~~~l~~~~~------------~vr~aAa~aLg~l~~~~~~----  886 (1207)
T d1u6gc_         828 TDSIRLLALLSLGEVGHHIDLSGQ-----LELKSVILEAFSSPSE------------EVKSAASYALGSISVGNLP----  886 (1207)
T ss_dssp             CHHHHHHHHHHHHHHHHHSCCCSC-----THHHHHHHHGGGCSCH------------HHHHHHHHHHHHHHHHTHH----
T ss_pred             hHHHHHHHHHHHHHHHHhccccch-----HHHHHHHHHHhCCCCH------------HHHHHHHHHHHHHHHhhHH----
Confidence            345677777777776542  1111     1234566777777655            89999999999998 4332    


Q ss_pred             HHhcCcHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHH
Q 015851          153 IVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALR  232 (399)
Q Consensus       153 i~~~~~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~  232 (399)
                          ..+|.+++.+.....         .+...+..+..+..........-.....++.|...+.+.++.+|..+..+|+
T Consensus       887 ----~~lp~il~~l~~~~~---------~~~~ll~al~ei~~~~~~~~~~~~~~~i~~~L~~~~~~~~~~vr~~~a~~lg  953 (1207)
T d1u6gc_         887 ----EYLPFVLQEITSQPK---------RQYLLLHSLKEIISSASVVGLKPYVENIWALLLKHCECAEEGTRNVVAECLG  953 (1207)
T ss_dssp             ----HHHHHHHHHHHSCGG---------GHHHHHHHHHHHHHSSCSTTTHHHHHHHHHHHTTCCCCSSTTHHHHHHHHHH
T ss_pred             ----HHhHHHHHHHhcCch---------HHHHHHHHHHHHHHhcchhhhHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence                246777777765443         2333445555444322111111112234455666677778899999999999


Q ss_pred             HhhcCChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHHCCCcHHHHHhhcCCChHHHHHHH
Q 015851          233 TLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAA  312 (399)
Q Consensus       233 ~L~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~  312 (399)
                      .|+..++.        ..+|.|...+.++++.+|..++.++..+....+......+ ...++.++..|.+++..+|..|+
T Consensus       954 ~L~~~~~~--------~~lp~L~~~l~~~~~~~r~~ai~~l~~~~~~~~~~~~~~l-~~li~~ll~~l~d~~~~vR~~al 1024 (1207)
T d1u6gc_         954 KLTLIDPE--------TLLPRLKGYLISGSSYARSSVVTAVKFTISDHPQPIDPLL-KNCIGDFLKTLEDPDLNVRRVAL 1024 (1207)
T ss_dssp             HHHHSSGG--------GTHHHHTTTSSSSCHHHHHHHHHHTGGGCCSSCCTHHHHH-HHHSTTTHHHHSSSSTHHHHHHH
T ss_pred             HHHhcCHH--------HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcchhhHHHH-HHHHHHHHHHhCCCCHHHHHHHH
Confidence            99875543        3689999999999999999999999988765444333322 34577778889999999999999


Q ss_pred             HHHHHhhccChhhHHHHHhcCCHHHHHHhhCC------------------CCHHHHHHHHHHHHHhhccCCCC
Q 015851          313 LLLGQFAATDSDCKVHIVQRGAVRPLIEMLQS------------------PDVQLREMSAFALGRLAQVITVS  367 (399)
Q Consensus       313 ~~L~~l~~~~~~~~~~l~~~g~v~~L~~ll~~------------------~~~~v~~~a~~~L~~l~~~~~~~  367 (399)
                      .+|..++...+........ .++|.|+....-                  ...++|+.|..++..+.....++
T Consensus      1025 ~~l~~~~~~~p~li~~~l~-~llp~l~~~t~~~~e~ir~v~~gp~kh~~d~gl~~rk~a~e~~~~~l~~~~~~ 1096 (1207)
T d1u6gc_        1025 VTFNSAAHNKPSLIRDLLD-TVLPHLYNETKVRKELIREVEMGPFKHTVDDGLDIRKAAFECMYTLLDSCLDR 1096 (1207)
T ss_dssp             HHHHHHHHHCGGGTGGGHH-HHHHHHHHTTSCCGGGEEEEEETTEEEEEETHHHHHHHHHHHHHHHHHSSCSS
T ss_pred             HHHHHHHHhChHHHHHHHH-HHHHHHHHHhccchhheeeeecCCceeecCCcHHHHHHHHHHHHHHHHHhhhh
Confidence            9999998765544333332 256666654321                  34569999999999999776654

>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.54  E-value=3.4e-06  Score=83.36  Aligned_cols=285  Identities=12%  Similarity=0.126  Sum_probs=167.6

Q ss_pred             hhhhHHHHhhhhhcchhhhHHHHHHHHHHHHHHcCC-hhHHHHHHh--CCChHHHHhcccCCCCcccccCCCcchHHHHH
Q 015851           58 EVSAQVNVLNTTFSWLEADRAAAKRATHVLAELAKN-EEVVNWIVE--GGAVPALVKHLQAPPTSEADRNLKPFEHEVEK  134 (399)
Q Consensus        58 ~~~~~~~~L~~~l~~~~~~~~~~~~a~~~L~~l~~~-~~~~~~~~~--~g~l~~L~~lL~~~~~~~~~~~~~~~~~~~~~  134 (399)
                      .||.+++.|...+.. +.+...+..|+.+|..++.+ ......+..  ...+..+++.+.+.+.          +..++.
T Consensus       131 ~wpeli~~L~~~~~s-~~~~~~~~~al~~l~~i~e~~~~~~~~~~~~~~~il~~i~~~~~~~~~----------~~~v~~  199 (861)
T d2bpta1         131 AWPELMKIMVDNTGA-EQPENVKRASLLALGYMCESADPQSQALVSSSNNILIAIVQGAQSTET----------SKAVRL  199 (861)
T ss_dssp             CCHHHHHHHHHHTST-TSCHHHHHHHHHHHHHHHHTSSTTSSTTGGGHHHHHHHHHHHHSTTCC----------CHHHHH
T ss_pred             chHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhcccC----------CHHHHH
Confidence            356777777666532 23345677888888888753 111111110  1123334443433332          237899


Q ss_pred             HHHHHHHHhc-CChhhHH-HHHhcCcHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHH
Q 015851          135 GSAFALGLLA-VKPEHQQ-LIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPL  212 (399)
Q Consensus       135 ~a~~~L~~l~-~~~~~~~-~i~~~~~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L  212 (399)
                      .+..++.++. ..+..-. .......++.+...++..+.        +++..++.++..++...+..-......-....+
T Consensus       200 ~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--------~~~~~~~~~l~~i~~~~~~~~~~~l~~~l~~l~  271 (861)
T d2bpta1         200 AALNALADSLIFIKNNMEREGERNYLMQVVCEATQAEDI--------EVQAAAFGCLCKIMSKYYTFMKPYMEQALYALT  271 (861)
T ss_dssp             HHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHHTCSCH--------HHHHHHHHHHHHHHHHHGGGCHHHHHHTHHHHH
T ss_pred             HHHHHHHHHHHHHhHhHHhhhhhhHHHHhHHHHhcCCCH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999987 3332211 11112245566666665554        888999999999986443321111212222334


Q ss_pred             HHhhcCCCHHHHHHHHHHHHHhhcCChhhHHHHHh----------------cCCHHHHHHhhcC-------CCHHHHHHH
Q 015851          213 VELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVE----------------CNALPTLILMLRS-------EDSAIHYEA  269 (399)
Q Consensus       213 ~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~----------------~~~~~~L~~ll~~-------~~~~v~~~a  269 (399)
                      ....++.++.++..++..+..++............                ...++.+...+..       .+...+..+
T Consensus       272 ~~~~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~l~~~l~~~~~~~~~~~~~~~~~~  351 (861)
T d2bpta1         272 IATMKSPNDKVASMTVEFWSTICEEEIDIAYELAQFPQSPLQSYNFALSSIKDVVPNLLNLLTRQNEDPEDDDWNVSMSA  351 (861)
T ss_dssp             HHHTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCSCCCCCHHHHHHHHHHHHHHHHTTCCCCC-CCCCCHHHHHH
T ss_pred             HHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchhHHHHHHH
Confidence            45566778999999999888887521111111111                1234555555543       223577777


Q ss_pred             HHHHHHhhcCChhHHHHHHHCCCcHHHHHhhcCCChHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHhhCCCCHHH
Q 015851          270 VGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQL  349 (399)
Q Consensus       270 ~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~v~~L~~ll~~~~~~v  349 (399)
                      ..++..++...+......    ..+.+...+.+.++..+..++.+++.++.........-.-..+++.++..+.++++.+
T Consensus       352 ~~~l~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~a~~~l~~i~~~~~~~~~~~~l~~~l~~l~~~l~d~~~~v  427 (861)
T d2bpta1         352 GACLQLFAQNCGNHILEP----VLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYVHQALPSILNLMNDQSLQV  427 (861)
T ss_dssp             HHHHHHHHHHHGGGGHHH----HHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHGGGCSCHHH
T ss_pred             HHHHHHHHhhcchhhhhh----hcchhhhhhhhHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhcCcchhh
Confidence            777777764322221111    2344555567788899999999999998653322222222346889999999999999


Q ss_pred             HHHHHHHHHHhhccCC
Q 015851          350 REMSAFALGRLAQVIT  365 (399)
Q Consensus       350 ~~~a~~~L~~l~~~~~  365 (399)
                      |..+.++++.++...+
T Consensus       428 r~~a~~~l~~l~~~~~  443 (861)
T d2bpta1         428 KETTAWCIGRIADSVA  443 (861)
T ss_dssp             HHHHHHHHHHHHHHHG
T ss_pred             hhHHHHHHHHHHHHhc
Confidence            9999999999987644

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.52  E-value=1.7e-07  Score=97.12  Aligned_cols=269  Identities=16%  Similarity=0.117  Sum_probs=171.2

Q ss_pred             hhhhHHHHHHHHHHHHHHcCChh-HHHHHHhCCChHHHHhcccCCCCcccccCCCcchHHHHHHHHHHHHHhc-CChhhH
Q 015851           73 LEADRAAAKRATHVLAELAKNEE-VVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA-VKPEHQ  150 (399)
Q Consensus        73 ~~~~~~~~~~a~~~L~~l~~~~~-~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~~~~~a~~~L~~l~-~~~~~~  150 (399)
                      .+.|+.+|.-|+.-|.+....+. ..+.-....+++.|+++|++.++            +||..|+++|+.+. ..++..
T Consensus        13 ~~~D~d~R~ma~~dl~~~l~~~~~~~~~~~~~~i~~~ll~~L~D~~~------------~Vq~~A~k~l~~l~~~~~~~~   80 (1207)
T d1u6gc_          13 TSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNG------------EVQNLAVKCLGPLVSKVKEYQ   80 (1207)
T ss_dssp             TCSSHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTTCSSH------------HHHHHHHHHHHHHHTTSCHHH
T ss_pred             CCCCHhHHHHHHHHHHHHHhhcccccChHHHHHHHHHHHHHhCCCCH------------HHHHHHHHHHHHHHHhCcHhh
Confidence            46788899999988887654211 00000112357889999987766            89999999999998 333221


Q ss_pred             HHHHhcCcHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhhcCchhH-----HHHHhcCChHHHHHhhcC-CCHHHH
Q 015851          151 QLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIK-----TRVRMEGGIPPLVELLEF-TDTKVQ  224 (399)
Q Consensus       151 ~~i~~~~~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~-----~~~~~~~~i~~L~~ll~~-~~~~v~  224 (399)
                      .    ...++.|+..+.+...        ..+..+..+|..+...-+...     ........++.+...+.. .++.++
T Consensus        81 ~----~~l~~~L~~~l~~~~~--------~~r~~~~~~L~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~v~  148 (1207)
T d1u6gc_          81 V----ETIVDTLCTNMLSDKE--------QLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQ  148 (1207)
T ss_dssp             H----HHHHHHHHHHTTCSSS--------HHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHH
T ss_pred             H----HHHHHHHHHHhcCCch--------hhhHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhhcCCCCHHHH
Confidence            1    2256677777765544        666777777766653222100     011112234445554444 568899


Q ss_pred             HHHHHHHHHhhcCChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHHCCCcHHHHHhhc-CC
Q 015851          225 RAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLS-SC  303 (399)
Q Consensus       225 ~~a~~~L~~L~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~-~~  303 (399)
                      ..++.+|..+....+....... ..+++.++..+.+++..+|..|+.+|+.++...+..    .-...++.++..+. +.
T Consensus       149 ~~al~~l~~l~~~~g~~l~~~~-~~il~~l~~~l~~~~~~vR~~A~~~l~~l~~~~~~~----~~~~~~~~ll~~l~~~~  223 (1207)
T d1u6gc_         149 LEALDIMADMLSRQGGLLVNFH-PSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNI----VFVDLIEHLLSELSKND  223 (1207)
T ss_dssp             HHHHHHHHHHHHHTCSSCTTTH-HHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC--------CTTHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHHhhHhhHHHH-HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHCCHH----HHHHHHHHHHHHHccCC
Confidence            9999999988763332111111 235677888888999999999999999998643321    11235666666664 44


Q ss_pred             ChHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhccCCCCcchh
Q 015851          304 CSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQVITVSVLPA  371 (399)
Q Consensus       304 ~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~  371 (399)
                      +...+..++.+++.++...+...... -..+++.+.+.+.+.++++++.+..++..+....+..+.|.
T Consensus       224 ~~~~~~~~~~~l~~l~~~~~~~~~~~-l~~i~~~l~~~l~~~~~~~r~~al~~l~~l~~~~~~~~~~~  290 (1207)
T d1u6gc_         224 SMSTTRTYIQCIAAISRQAGHRIGEY-LEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPKEVYPH  290 (1207)
T ss_dssp             SSCSCTTHHHHHHHHHHHSSGGGTTS-CTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHCTTCCCHHH
T ss_pred             CHHHHHHHHHHHHHHHHHcchhhHHH-HHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhChhhhhhh
Confidence            45566677788888875433221111 14578999999999999999999999999998887764443

>d1ho8a_ a.118.1.9 (A:) Regulatory subunit H of the V-type ATPase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Regulatory subunit H of the V-type ATPase
domain: Regulatory subunit H of the V-type ATPase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.51  E-value=7.3e-06  Score=73.42  Aligned_cols=238  Identities=19%  Similarity=0.191  Sum_probs=162.9

Q ss_pred             hhHHHHHHHHHHHHHHcCChhHHHHHHhC--CChHHHHhcccCCCCc-----ccccCCCcchHHHHHHHHHHHHHhcCCh
Q 015851           75 ADRAAAKRATHVLAELAKNEEVVNWIVEG--GAVPALVKHLQAPPTS-----EADRNLKPFEHEVEKGSAFALGLLAVKP  147 (399)
Q Consensus        75 ~~~~~~~~a~~~L~~l~~~~~~~~~~~~~--g~l~~L~~lL~~~~~~-----~~~~~~~~~~~~~~~~a~~~L~~l~~~~  147 (399)
                      .+...+.-++.++..+...+.+|..+...  ..+++++..|......     .....+...+..++.+++-+++-|+.++
T Consensus       177 ~~~~~~~i~v~~lq~llr~~~~R~~fw~~~~~~~~~l~~il~~a~~~~~~~~~~~~~~~~~~~Ql~Y~~ll~lWlLSF~~  256 (477)
T d1ho8a_         177 EQMDTCYVCIRLLQELAVIPEYRDVIWLHEKKFMPTLFKILQRATDSQLATRIVATNSNHLGIQLQYHSLLLIWLLTFNP  256 (477)
T ss_dssp             TCHHHHHHHHHHHHHHHTSHHHHHHHHTTHHHHHHHHHHHHHHHHC-------------CCHHHHHHHHHHHHHHHTTSH
T ss_pred             cccchHHHHHHHHHHHhcCccHHHHHHHcccchHHHHHHHHHHHhcccccchhhcccCCCccHHHHHHHHHHHHHHHcCH
Confidence            34456778899999999999999988643  4567777766531110     0000122335688999999999999999


Q ss_pred             hhHHHHHhcC--cHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhhcCch-----hHHHHHhcCChHHHHHhhcC--
Q 015851          148 EHQQLIVDNG--ALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSS-----IKTRVRMEGGIPPLVELLEF--  218 (399)
Q Consensus       148 ~~~~~i~~~~--~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~-----~~~~~~~~~~i~~L~~ll~~--  218 (399)
                      +....+.+..  .++.++++++....+       .+.+.++.+|.|++.....     ....+...++++. +..|..  
T Consensus       257 ~~~~~l~~~~~~~i~~l~~i~~~s~KE-------KvvRv~l~~l~Nll~~~~~~~~~~~~~~~v~~~~l~~-l~~L~~r~  328 (477)
T d1ho8a_         257 VFANELVQKYLSDFLDLLKLVKITIKE-------KVSRLCISIILQCCSTRVKQHKKVIKQLLLLGNALPT-VQSLSERK  328 (477)
T ss_dssp             HHHHHHHTTSHHHHHHHHHHHHHCCSH-------HHHHHHHHHHHHTTSSSSTTHHHHHHHHHHHHCHHHH-HHHHHSSC
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHhhhHH-------HHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHcchhHH-HHHHhcCC
Confidence            9888887764  588999999877765       8889999999999954221     1222333444544 444543  


Q ss_pred             -CCHHHHHHHHHH-------HHHhhc--------------CChhhH-HHHHh----------cCCHHHHHHhhc------
Q 015851          219 -TDTKVQRAAAGA-------LRTLAF--------------KNDENK-NQIVE----------CNALPTLILMLR------  259 (399)
Q Consensus       219 -~~~~v~~~a~~~-------L~~L~~--------------~~~~~~-~~~~~----------~~~~~~L~~ll~------  259 (399)
                       .|+++....-..       +..+++              ..|..+ +.|..          ...+..|+.+|.      
T Consensus       329 ~~Dedl~edl~~L~~~L~~~~k~lTsfd~Y~~Ev~Sg~L~WSP~H~se~FW~EN~~kf~e~~~~llk~L~~lL~~~~~~~  408 (477)
T d1ho8a_         329 YSDEELRQDISNLKEILENEYQELTSFDEYVAELDSKLLCWSPPHVDNGFWSDNIDEFKKDNYKIFRQLIELLQAKVRNG  408 (477)
T ss_dssp             CSSHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHTCCCCCGGGGCHHHHHHHSGGGSSGGGHHHHHHHHHHHHHHHTT
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHhcCCCCCCCCcCChhHHHHHHHhhcccchHHHHHHHHHHhhccccc
Confidence             355554333221       122221              112221 12221          124677888885      


Q ss_pred             ----CCCHHHHHHHHHHHHHhhcCChhHHHHHHHCCCcHHHHHhhcCCChHHHHHHHHHHHHhhc
Q 015851          260 ----SEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAA  320 (399)
Q Consensus       260 ----~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~  320 (399)
                          +.|+.+..-||.=++.++...|..+..+-+-|+=..+++++.+++++|+.+|+.++..+..
T Consensus       409 ~~~~s~D~~~lAVAc~DiGefvr~~P~gr~il~~lg~K~~vM~Lm~h~d~~Vr~eAL~avQklm~  473 (477)
T d1ho8a_         409 DVNAKQEKIIIQVALNDITHVVELLPESIDVLDKTGGKADIMELLNHSDSRVKYEALKATQAIIG  473 (477)
T ss_dssp             CCCSHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHSHHHHHHHHTSCSSHHHHHHHHHHHHHHHH
T ss_pred             ccccCCCcceeehhhhhHHHHHHHCcchhHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence                2467889999999999999999998888888999999999999999999999999998764

>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.19  E-value=5e-05  Score=74.90  Aligned_cols=281  Identities=16%  Similarity=0.152  Sum_probs=165.7

Q ss_pred             hhhhHHHHhhhhhcchhhhHHHHHHHHHHHHHHcCC-hhHHH-HHHhCCChHHHHhcccCCCCcccccCCCcchHHHHHH
Q 015851           58 EVSAQVNVLNTTFSWLEADRAAAKRATHVLAELAKN-EEVVN-WIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKG  135 (399)
Q Consensus        58 ~~~~~~~~L~~~l~~~~~~~~~~~~a~~~L~~l~~~-~~~~~-~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~~~~~  135 (399)
                      ....+++.+...+...+.+..++..|+.++.+.... ..... .....-+++.+...+.+++.            +++..
T Consensus       169 ~~~~il~~i~~~l~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~------------~v~~~  236 (876)
T d1qgra_         169 KSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDT------------RVRVA  236 (876)
T ss_dssp             GHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHTTCSSH------------HHHHH
T ss_pred             HHHHHHHHHHHHHcCcCccHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhcCCCH------------HHHHH
Confidence            334455555555543445567888999998887653 22111 11112235666666666554            78999


Q ss_pred             HHHHHHHhc-CChhhHHHHHhcCcHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhhcCchhHH-------------
Q 015851          136 SAFALGLLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKT-------------  201 (399)
Q Consensus       136 a~~~L~~l~-~~~~~~~~i~~~~~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~-------------  201 (399)
                      ++.+|..+. ..++.-.........+.+...+....+        ++...++..+..++........             
T Consensus       237 ~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~--------~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~  308 (876)
T d1qgra_         237 ALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDID--------EVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPE  308 (876)
T ss_dssp             HHHHHHHHHHHSGGGCHHHHTTTHHHHHHHHHTCSSH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCS
T ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhccccH--------HHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhhHH
Confidence            999999998 455443333333344445555554443        6667777766666632111100             


Q ss_pred             -------HHHhcCChHHHHHhhcC-------CCHHHHHHHHHHHHHhhcCChhhHHHHHhcCCHHHHHHhhcCCCHHHHH
Q 015851          202 -------RVRMEGGIPPLVELLEF-------TDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHY  267 (399)
Q Consensus       202 -------~~~~~~~i~~L~~ll~~-------~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~  267 (399)
                             .......++.+...+..       ++..++..+..++..++......   +.. ..++.+...+.+++...+.
T Consensus       309 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~---~~~-~~~~~i~~~l~~~~~~~r~  384 (876)
T d1qgra_         309 HTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDD---IVP-HVLPFIKEHIKNPDWRYRD  384 (876)
T ss_dssp             SCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHGGG---GHH-HHHHHHHHHTTCSSHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhhHHHHHhcccccccccchHHHHHHHHHHHHHHHhhhh---hhh-hhHHHHHHhhccchHHHHH
Confidence                   00111223444444332       12347777888887777532211   111 1345566667788889999


Q ss_pred             HHHHHHHHhhcCChhHHHHHHHCCCcHHHHHhhcCCChHHHHHHHHHHHHhhccChhhH-HHHHhcCCHHHHHHhhCCCC
Q 015851          268 EAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCK-VHIVQRGAVRPLIEMLQSPD  346 (399)
Q Consensus       268 ~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~-~~l~~~g~v~~L~~ll~~~~  346 (399)
                      .++.+++.+..+.......-.....++.+...+.++++.++..++++++.++...+... ....-...++.+...+. .+
T Consensus       385 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~-~~  463 (876)
T d1qgra_         385 AAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIEGLS-AE  463 (876)
T ss_dssp             HHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTSSTTTHHHHHHHHHHHTT-SC
T ss_pred             HHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHHHHcchhhhhHHHhhhHHHHHHHHhc-CC
Confidence            99999999875433222223334568888899999999999999999999986433211 00001123455555554 47


Q ss_pred             HHHHHHHHHHHHHhhcc
Q 015851          347 VQLREMSAFALGRLAQV  363 (399)
Q Consensus       347 ~~v~~~a~~~L~~l~~~  363 (399)
                      +.++..+++++.++...
T Consensus       464 ~~v~~~~~~~l~~l~~~  480 (876)
T d1qgra_         464 PRVASNVCWAFSSLAEA  480 (876)
T ss_dssp             HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            88999999999998753

>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: MTH187
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=98.17  E-value=2.7e-06  Score=61.70  Aligned_cols=88  Identities=18%  Similarity=0.197  Sum_probs=73.9

Q ss_pred             CChHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHH
Q 015851          207 GGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKE  286 (399)
Q Consensus       207 ~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~  286 (399)
                      ..++.|+..|.++++.+|..|+++|+++..  +         +.++.|+.+|.++++.||..|+++|+.+.  ++.    
T Consensus        22 ~~~~~L~~~l~d~~~~vR~~a~~~L~~~~~--~---------~~~~~L~~~l~d~~~~VR~~a~~aL~~i~--~~~----   84 (111)
T d1te4a_          22 EAFEPLLESLSNEDWRIRGAAAWIIGNFQD--E---------RAVEPLIKLLEDDSGFVRSGAARSLEQIG--GER----   84 (111)
T ss_dssp             TTHHHHHHGGGCSCHHHHHHHHHHHGGGCS--H---------HHHHHHHHHHHHCCTHHHHHHHHHHHHHC--SHH----
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHhcch--h---------hhHHHHHhhhccchhHHHHHHHHHHHHhC--ccc----
Confidence            457789999999999999999999987653  2         25788999999999999999999999984  232    


Q ss_pred             HHHCCCcHHHHHhhcCCChHHHHHHHHHHH
Q 015851          287 VLAAGALQPVIGLLSSCCSESQREAALLLG  316 (399)
Q Consensus       287 ~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~  316 (399)
                           .++.|..+++++++.++..|+.+|.
T Consensus        85 -----~~~~L~~ll~d~~~~vr~~A~~aL~  109 (111)
T d1te4a_          85 -----VRAAMEKLAETGTGFARKVAVNYLE  109 (111)
T ss_dssp             -----HHHHHHHHTTSCCTHHHHHHHHHGG
T ss_pred             -----hHHHHHHHHcCCCHHHHHHHHHHHH
Confidence                 4677888999999999999988764

>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.17  E-value=9.7e-05  Score=72.53  Aligned_cols=264  Identities=15%  Similarity=0.157  Sum_probs=155.0

Q ss_pred             hhhhHHHHHHHHHHHHHHcCC-hhHHH-HHHhCCChHHHHhcccCCCCcccccCCCcchHHHHHHHHHHHHHhc-CChhh
Q 015851           73 LEADRAAAKRATHVLAELAKN-EEVVN-WIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA-VKPEH  149 (399)
Q Consensus        73 ~~~~~~~~~~a~~~L~~l~~~-~~~~~-~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~~~~~a~~~L~~l~-~~~~~  149 (399)
                      .+.+..++..|+.++.++... +.... .......++.+...+.+++.            +++..+..++..++ ..++.
T Consensus       191 ~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~------------~~~~~~~~~l~~i~~~~~~~  258 (861)
T d2bpta1         191 TETSKAVRLAALNALADSLIFIKNNMEREGERNYLMQVVCEATQAEDI------------EVQAAAFGCLCKIMSKYYTF  258 (861)
T ss_dssp             TCCCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHHTCSCH------------HHHHHHHHHHHHHHHHHGGG
T ss_pred             ccCCHHHHHHHHHHHHHHHHHHhHhHHhhhhhhHHHHhHHHHhcCCCH------------HHHHHHHHHHHHHHHHHHHH
Confidence            345567899999999988764 22211 12223356677777776655            88999999999998 33332


Q ss_pred             -HHHHHhcCcHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhhcCchhHHHHH----------------hcCChHHH
Q 015851          150 -QQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVR----------------MEGGIPPL  212 (399)
Q Consensus       150 -~~~i~~~~~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~----------------~~~~i~~L  212 (399)
                       ...+..  .+..+........++       +++..++..+..++...........                -...++.+
T Consensus       259 ~~~~l~~--~l~~l~~~~~~~~~~-------~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~l  329 (861)
T d2bpta1         259 MKPYMEQ--ALYALTIATMKSPND-------KVASMTVEFWSTICEEEIDIAYELAQFPQSPLQSYNFALSSIKDVVPNL  329 (861)
T ss_dssp             CHHHHHH--THHHHHHHHTTCSSH-------HHHHHHHHHHHHHHHHHHHHHHHHHHCTTCSCCCCCHHHHHHHHHHHHH
T ss_pred             HHHHHHH--HHHHHHHHHhcCccH-------HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH
Confidence             222221  233333222222222       7777788777777642211111111                11234445


Q ss_pred             HHhhcC-------CCHHHHHHHHHHHHHhhcCChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHH
Q 015851          213 VELLEF-------TDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKK  285 (399)
Q Consensus       213 ~~ll~~-------~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~  285 (399)
                      ...+..       .+...+..+..++..++...++..   .. -..+.+...+.+.+...+..++.+++.++........
T Consensus       330 ~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~---~~-~~~~~~~~~~~~~~~~~~~~a~~~l~~i~~~~~~~~~  405 (861)
T d2bpta1         330 LNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCGNHI---LE-PVLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQR  405 (861)
T ss_dssp             HHHTTCCCCC-CCCCCHHHHHHHHHHHHHHHHHGGGG---HH-HHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHH
T ss_pred             HHHHHHhhccccchhHHHHHHHHHHHHHHHhhcchhh---hh-hhcchhhhhhhhHHHHHHHHHHHHHHHHHhhcchhhH
Confidence            555432       224577777777777765322211   11 1233445566678889999999999999865433322


Q ss_pred             HHHHCCCcHHHHHhhcCCChHHHHHHHHHHHHhhccChhhHHHHHhcCCHH----HHHHhhCCCCHHHHHHHHHHHHHhh
Q 015851          286 EVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVR----PLIEMLQSPDVQLREMSAFALGRLA  361 (399)
Q Consensus       286 ~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~v~----~L~~ll~~~~~~v~~~a~~~L~~l~  361 (399)
                      ...-..+++.++..+.++++.++..++++++.++...+.   .+.....++    .+.... ..++.++..+++++..+.
T Consensus       406 ~~~l~~~l~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~---~~~~~~~~~~ll~~l~~~~-~~~~~~~~~~~~~~~~l~  481 (861)
T d2bpta1         406 TYYVHQALPSILNLMNDQSLQVKETTAWCIGRIADSVAE---SIDPQQHLPGVVQACLIGL-QDHPKVATNCSWTIINLV  481 (861)
T ss_dssp             HHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHGG---GSCTTTTHHHHHHHHHHHH-TSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhcCcchhhhhHHHHHHHHHHHHhch---hhhhHHhhhhhhHHHHhcc-ccChHHHHHHHHHHHHHH
Confidence            223345788899999999999999999999998753211   111122233    333333 357888888888888887


Q ss_pred             ccCC
Q 015851          362 QVIT  365 (399)
Q Consensus       362 ~~~~  365 (399)
                      ....
T Consensus       482 ~~~~  485 (861)
T d2bpta1         482 EQLA  485 (861)
T ss_dssp             HHHS
T ss_pred             HHhh
Confidence            6433

>d1upka_ a.118.1.15 (A:) Mo25 protein {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Mo25 protein
domain: Mo25 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.47  E-value=0.0087  Score=49.98  Aligned_cols=204  Identities=14%  Similarity=0.105  Sum_probs=152.1

Q ss_pred             HHHHhcCcHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhhcCchhH----HHHHhc-CChHHHHHhhcCCCHHHHH
Q 015851          151 QLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIK----TRVRME-GGIPPLVELLEFTDTKVQR  225 (399)
Q Consensus       151 ~~i~~~~~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~----~~~~~~-~~i~~L~~ll~~~~~~v~~  225 (399)
                      ..+...+.+..|+..|..-+-        +.+..+..+..++.......+    +.+... ..+..|+.--  +++++.-
T Consensus        63 ~e~~~~d~l~~Li~~L~~L~f--------E~RKD~~~if~~llR~~~~~~~p~v~Yl~~~~eil~~L~~gy--e~~eiAl  132 (330)
T d1upka_          63 QELYNSGLLSTLVADLQLIDF--------EGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGY--ESPEIAL  132 (330)
T ss_dssp             HHHHHHSHHHHHHHTGGGSCH--------HHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGG--GSTTTHH
T ss_pred             HHHHHhChHHHHHHhCCCCCC--------chhhhHHHHHHHHhhcCCCCCCccHHHHHcCHHHHHHHHhhc--CCcchhh
Confidence            345556788888888887665        888999999999986443322    222222 2333333333  3455666


Q ss_pred             HHHHHHHHhhcCChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHHHHCC---CcHHHHHhhcC
Q 015851          226 AAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAG---ALQPVIGLLSS  302 (399)
Q Consensus       226 ~a~~~L~~L~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~---~l~~L~~lL~~  302 (399)
                      .+-..|+.... ++.....+.....+..+...++.++-++...|..++..+....+......+..+   ++...-.+|.+
T Consensus       133 ~~G~mLREcik-~e~lak~iL~s~~f~~fF~yv~~~~FdiasDAf~TfkelLt~hk~~~aefl~~Nyd~Ff~~~~~LL~s  211 (330)
T d1upka_         133 NCGIMLRECIR-HEPLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHS  211 (330)
T ss_dssp             HHHHHHHHHHT-SHHHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTC
T ss_pred             hhhHHHHHHHh-hHHHHHHHHccHHHHHHHHHHcCCchHHHHHHHHHHHHHHHhCHHHHHHHHHHhHHHHHHHHHHHhcC
Confidence            66667777776 688888888888888888999999999999999999998876666666666554   56677788999


Q ss_pred             CChHHHHHHHHHHHHhhccChhhHH----HHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhccCCC
Q 015851          303 CCSESQREAALLLGQFAATDSDCKV----HIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQVITV  366 (399)
Q Consensus       303 ~~~~v~~~a~~~L~~l~~~~~~~~~----~l~~~g~v~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~  366 (399)
                      ++.-++..++..|+.+.. +..+..    .+.+..-+..+..+|++.+..++-.|-.+...+..++..
T Consensus       212 ~NYVtrRqSlKLLgelLl-dr~N~~vm~~Yvs~~~nLkl~M~LLrd~sk~Iq~EAFhVFKvFVANpnK  278 (330)
T d1upka_         212 ENYVTKRQSLKLLGELLL-DRHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVANPNK  278 (330)
T ss_dssp             SSHHHHHHHHHHHHHHHH-SGGGHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHCSSC
T ss_pred             CchHHHHHHHHHHHHHHh-hhhHHHHHHHHhCCHHHHHHHHHHhcCchhhHHHHhhhHhhhhhcCCCC
Confidence            999999999999999985 344333    333456688999999999999999999999999987774

>d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Leucine-rich repeat variant
domain: Leucine-rich repeat variant
species: Azotobacter vinelandii [TaxId: 354]

Probab=97.35  E-value=4.8e-05  Score=62.38  Aligned_cols=32  Identities=19%  Similarity=0.158  Sum_probs=21.2

Q ss_pred             HHHHHHhCCChHHHHhcccCCCCcccccCCCcchHHHHHHHHHH
Q 015851           96 VVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFA  139 (399)
Q Consensus        96 ~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~~~~~a~~~  139 (399)
                      .|.....+-.+..|..+++++++            +||..+++.
T Consensus        58 ~Ra~Aa~~a~~~~L~~Ll~D~d~------------~VR~~AA~~   89 (233)
T d1lrva_          58 RRAIAVRYSPVEALTPLIRDSDE------------VVRRAVAYR   89 (233)
T ss_dssp             HHHHHHTTSCGGGGGGGTTCSSH------------HHHHHHHTT
T ss_pred             HHHHHHhcCCHHHHHHHhcCCCH------------HHHHHHHHH
Confidence            33333445567788888888776            777777654

>d1upka_ a.118.1.15 (A:) Mo25 protein {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Mo25 protein
domain: Mo25 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.99  E-value=0.073  Score=44.27  Aligned_cols=242  Identities=13%  Similarity=0.151  Sum_probs=161.9

Q ss_pred             HHHHhCCChHHHHhcccCCCCcccccCCCcchHHHHHHHHHHHHHhc-CChhh----HHHHHhcCcHHHHHHHHhccccC
Q 015851           98 NWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA-VKPEH----QQLIVDNGALSHLVNLLKRHMDS  172 (399)
Q Consensus        98 ~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~~~~~a~~~L~~l~-~~~~~----~~~i~~~~~i~~L~~~L~~~~~~  172 (399)
                      ..+...+.+..|+..|..-+-            +.|..++.++.++- ..+..    .+.+...   +.++..|-.+.+.
T Consensus        63 ~e~~~~d~l~~Li~~L~~L~f------------E~RKD~~~if~~llR~~~~~~~p~v~Yl~~~---~eil~~L~~gye~  127 (330)
T d1upka_          63 QELYNSGLLSTLVADLQLIDF------------EGKKDVAQIFNNILRRQIGTRTPTVEYICTQ---QNILFMLLKGYES  127 (330)
T ss_dssp             HHHHHHSHHHHHHHTGGGSCH------------HHHHHHHHHHHHHHTCCBTTBCHHHHHHHTC---THHHHHHHHGGGS
T ss_pred             HHHHHhChHHHHHHhCCCCCC------------chhhhHHHHHHHHhhcCCCCCCccHHHHHcC---HHHHHHHHhhcCC
Confidence            345566788888888876554            88889999999988 33322    2444432   2333333333322


Q ss_pred             ccccccHHHHHHHHHHHHHHhhcCchhHHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhhHHHHHhc---C
Q 015851          173 NCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVEC---N  249 (399)
Q Consensus       173 ~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~---~  249 (399)
                      .      ++...+-..|..+. ..+.....+.....+..+.+.+..++-++...|..++..+...++.....+...   .
T Consensus       128 ~------eiAl~~G~mLREci-k~e~lak~iL~s~~f~~fF~yv~~~~FdiasDAf~TfkelLt~hk~~~aefl~~Nyd~  200 (330)
T d1upka_         128 P------EIALNCGIMLRECI-RHEPLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDR  200 (330)
T ss_dssp             T------TTHHHHHHHHHHHH-TSHHHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHH
T ss_pred             c------chhhhhhHHHHHHH-hhHHHHHHHHccHHHHHHHHHHcCCchHHHHHHHHHHHHHHHhCHHHHHHHHHHhHHH
Confidence            2      55555566666666 455566667777888889999999999999999999999998788777777763   3


Q ss_pred             CHHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhHHHHH----HHCCCcHHHHHhhcCCChHHHHHHHHHHHHhhccC---
Q 015851          250 ALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEV----LAAGALQPVIGLLSSCCSESQREAALLLGQFAATD---  322 (399)
Q Consensus       250 ~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~----~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~---  322 (399)
                      ++..+.++|.+++--++..++..|+.+... ..+...+    -+..-+..++.+|++.+..++-+|..+.--+.+..   
T Consensus       201 Ff~~~~~LL~s~NYVtrRqSlKLLgelLld-r~N~~vm~~Yvs~~~nLkl~M~LLrd~sk~Iq~EAFhVFKvFVANpnKp  279 (330)
T d1upka_         201 FFSEYEKLLHSENYVTKRQSLKLLGELLLD-RHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVANPNKT  279 (330)
T ss_dssp             HHHHHHHHTTCSSHHHHHHHHHHHHHHHHS-GGGHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHCSSCC
T ss_pred             HHHHHHHHhcCCchHHHHHHHHHHHHHHhh-hhHHHHHHHHhCCHHHHHHHHHHhcCchhhHHHHhhhHhhhhhcCCCCC
Confidence            567788899999999999999999999854 3332222    23346888999999999999999999888777642   


Q ss_pred             hhhHHHHHh--cCCHHHHHHhhCC--CCHHHHHHHHHHHHHhhc
Q 015851          323 SDCKVHIVQ--RGAVRPLIEMLQS--PDVQLREMSAFALGRLAQ  362 (399)
Q Consensus       323 ~~~~~~l~~--~g~v~~L~~ll~~--~~~~v~~~a~~~L~~l~~  362 (399)
                      +.....+..  ..++..|-++..+  .|......=...+..|..
T Consensus       280 ~~I~~IL~~Nr~kLl~fl~~f~~d~~~DeqF~~EK~~lI~~I~~  323 (330)
T d1upka_         280 QPILDILLKNQAKLIEFLSKFQNDRTEDEQFNDEKTYLVKQIRD  323 (330)
T ss_dssp             HHHHHHHHHTHHHHHHHHHHTTTTC-CCSHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHhHHHHHHHHHhCCCCCCchhhHHHHHHHHHHHHHh
Confidence            233333333  2333444444332  355555554445554443

>d1lsha1 a.118.4.1 (A:285-620) Lipovitellin-phosvitin complex, superhelical domain {Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Lipovitellin-phosvitin complex, superhelical domain
family: Lipovitellin-phosvitin complex, superhelical domain
domain: Lipovitellin-phosvitin complex, superhelical domain
species: Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]

Probab=96.47  E-value=0.2  Score=42.64  Aligned_cols=164  Identities=20%  Similarity=0.203  Sum_probs=98.3

Q ss_pred             hHHHHHhhcC----CCHHHHHHHHHHHHHhhcCChhhHHHHHhcCCHHHHH----HhhcCCCHHHHHHHHHHHHHhhcCC
Q 015851          209 IPPLVELLEF----TDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLI----LMLRSEDSAIHYEAVGVIGNLVHSS  280 (399)
Q Consensus       209 i~~L~~ll~~----~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~L~----~ll~~~~~~v~~~a~~~L~~l~~~~  280 (399)
                      +..+..++.+    .++.++..+.-+++++....-... .-+....++.+.    +..+..+.+-...++.+|+|+.  .
T Consensus       125 l~~~~~l~~~~~~~~~~~l~~~a~La~gslv~~~c~~~-~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~g--~  201 (336)
T d1lsha1         125 LSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANT-VSCPDELLQPLHDLLSQSSDRAKEEEIVLALKALGNAG--Q  201 (336)
T ss_dssp             HHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTC-SSCCGGGTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT--C
T ss_pred             HHHHHHHHcCcccccchhHHHHHHHHHHHHHHHHhcCC-CCCcHHHHHHHHHHHHHhhcccchHHHHHHHHHHhccC--C
Confidence            4445666654    468888888888888875210000 001112233333    3445667777788899999995  3


Q ss_pred             hhHHHHHHHCCCcHHHHHhhcC-------CChHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHhh--CCCCHHHHH
Q 015851          281 PNIKKEVLAAGALQPVIGLLSS-------CCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEML--QSPDVQLRE  351 (399)
Q Consensus       281 ~~~~~~~~~~~~l~~L~~lL~~-------~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~v~~L~~ll--~~~~~~v~~  351 (399)
                      +.         .++.+..++..       .+..+|..|+++|.+++...+...+        +.+..+.  ...++++|.
T Consensus       202 p~---------~i~~l~~~l~~~~~~~~~~~~~vR~aAi~Alr~~~~~~p~~v~--------~~l~~i~~n~~e~~EvRi  264 (336)
T d1lsha1         202 PN---------SIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRDPRKVQ--------EIVLPIFLNVAIKSELRI  264 (336)
T ss_dssp             GG---------GHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTCHHHHH--------HHHHHHHHCTTSCHHHHH
T ss_pred             Hh---------HHHHHHHHhcccccccccccHHHHHHHHHHHHHhhhcCcHHHH--------HHHHHHHcCCCCChHHHH
Confidence            43         35666666643       2468999999999999865443221        2344444  346788988


Q ss_pred             HHHHHHHHhhccCCCCcchhHHHHHhhccccHHHHHHHHhhhHh
Q 015851          352 MSAFALGRLAQVITVSVLPAILIFIIINECQLEVLAFVLSEMVL  395 (399)
Q Consensus       352 ~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  395 (399)
                      .|..+|...  +++...+..+... +..|...+|..++.+.+-.
T Consensus       265 aA~~~lm~t--~P~~~~l~~i~~~-l~~E~~~QV~sfv~S~l~~  305 (336)
T d1lsha1         265 RSCIVFFES--KPSVALVSMVAVR-LRREPNLQVASFVYSQMRS  305 (336)
T ss_dssp             HHHHHHHHT--CCCHHHHHHHHHH-HTTCSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHhc--CCCHHHHHHHHHH-HHhCcHHHHHHHHHHHHHH
Confidence            888777553  3333233443333 3456677888888776643

>d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Leucine-rich repeat variant
domain: Leucine-rich repeat variant
species: Azotobacter vinelandii [TaxId: 354]

Probab=96.46  E-value=0.0048  Score=50.04  Aligned_cols=20  Identities=15%  Similarity=0.220  Sum_probs=14.7

Q ss_pred             HHHHHhhcCCCHHHHHHHHH
Q 015851          252 PTLILMLRSEDSAIHYEAVG  271 (399)
Q Consensus       252 ~~L~~ll~~~~~~v~~~a~~  271 (399)
                      +.++..|.+++++|+..++.
T Consensus       212 ~~ll~~L~D~d~~VR~aA~~  231 (233)
T d1lrva_         212 LEALRELDEPDPEVRLAIAG  231 (233)
T ss_dssp             HHHHHHCCCCCHHHHHHHHC
T ss_pred             HHHHHHhCCCCHHHHHHHHH
Confidence            45667778888888887753

>d1lsha1 a.118.4.1 (A:285-620) Lipovitellin-phosvitin complex, superhelical domain {Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Lipovitellin-phosvitin complex, superhelical domain
family: Lipovitellin-phosvitin complex, superhelical domain
domain: Lipovitellin-phosvitin complex, superhelical domain
species: Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]

Probab=95.88  E-value=0.35  Score=41.08  Aligned_cols=205  Identities=14%  Similarity=0.122  Sum_probs=122.9

Q ss_pred             ChHHHHhcccCCCCcccccCCCcchHHHHHHHHHHHHHhc-CChhhHHHHHhcCcHHHHHHHHhccccCccccccHHHHH
Q 015851          105 AVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIR  183 (399)
Q Consensus       105 ~l~~L~~lL~~~~~~~~~~~~~~~~~~~~~~a~~~L~~l~-~~~~~~~~i~~~~~i~~L~~~L~~~~~~~~~~~~~~~~~  183 (399)
                      .+..+.+++.+.....             ..+...|..++ ......+      .+..+..+++.......    ..+..
T Consensus        89 a~~~i~~~I~~~~ls~-------------~ea~~~l~~l~~~~~Pt~~------~l~~~~~l~~~~~~~~~----~~l~~  145 (336)
T d1lsha1          89 ALLFLKRTLASEQLTS-------------AEATQIVASTLSNQQATRE------SLSYARELLNTSFIRNR----PILRK  145 (336)
T ss_dssp             HHHHHHHHHHTTCSCH-------------HHHHHHHHHHHHTCCCCHH------HHHHHHHHHTCHHHHTC----HHHHH
T ss_pred             HHHHHHHHHHcCCCCH-------------HHHHHHHHHHhccCCCCHH------HHHHHHHHHcCcccccc----hhHHH
Confidence            4555677776655421             13445555555 1112222      35666666664321100    05666


Q ss_pred             HHHHHHHHHhh----cCchhHHHHHhcCChHHHH----HhhcCCCHHHHHHHHHHHHHhhcCChhhHHHHHhcCCHHHHH
Q 015851          184 RAADAITNLAH----ENSSIKTRVRMEGGIPPLV----ELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLI  255 (399)
Q Consensus       184 ~a~~~L~~l~~----~~~~~~~~~~~~~~i~~L~----~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~L~  255 (399)
                      .+.-+++++..    ..+.+.     ...++.+.    +.....+.+-...++.+|+|+-.  +.         .++.+.
T Consensus       146 ~a~La~gslv~~~c~~~~~~~-----~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~g~--p~---------~i~~l~  209 (336)
T d1lsha1         146 TAVLGYGSLVFRYCANTVSCP-----DELLQPLHDLLSQSSDRAKEEEIVLALKALGNAGQ--PN---------SIKKIQ  209 (336)
T ss_dssp             HHHHHHHHHHHHHHTTCSSCC-----GGGTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTC--GG---------GHHHHH
T ss_pred             HHHHHHHHHHHHHhcCCCCCc-----HHHHHHHHHHHHHhhcccchHHHHHHHHHHhccCC--Hh---------HHHHHH
Confidence            67777777663    222111     12233333    34456677778889999999974  32         467777


Q ss_pred             HhhcC-------CCHHHHHHHHHHHHHhhcCChhHHHHHHHCCCcHHHHHhhc--CCChHHHHHHHHHHHHhhccChhhH
Q 015851          256 LMLRS-------EDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLS--SCCSESQREAALLLGQFAATDSDCK  326 (399)
Q Consensus       256 ~ll~~-------~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~--~~~~~v~~~a~~~L~~l~~~~~~~~  326 (399)
                      .++.+       .+..+|..|+++|.+++...+...        .+.+..++.  ..++++|..|..+|...- .+... 
T Consensus       210 ~~l~~~~~~~~~~~~~vR~aAi~Alr~~~~~~p~~v--------~~~l~~i~~n~~e~~EvRiaA~~~lm~t~-P~~~~-  279 (336)
T d1lsha1         210 RFLPGQGKSLDEYSTRVQAEAIMALRNIAKRDPRKV--------QEIVLPIFLNVAIKSELRIRSCIVFFESK-PSVAL-  279 (336)
T ss_dssp             TTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTCHHHH--------HHHHHHHHHCTTSCHHHHHHHHHHHHHTC-CCHHH-
T ss_pred             HHhcccccccccccHHHHHHHHHHHHHhhhcCcHHH--------HHHHHHHHcCCCCChHHHHHHHHHHHhcC-CCHHH-
Confidence            77753       246899999999999986554432        334445543  456799999998887642 11122 


Q ss_pred             HHHHhcCCHHHHHHhh-CCCCHHHHHHHHHHHHHhhccCCC
Q 015851          327 VHIVQRGAVRPLIEML-QSPDVQLREMSAFALGRLAQVITV  366 (399)
Q Consensus       327 ~~l~~~g~v~~L~~ll-~~~~~~v~~~a~~~L~~l~~~~~~  366 (399)
                              +..+...+ .+++.+|.......|.++++...+
T Consensus       280 --------l~~i~~~l~~E~~~QV~sfv~S~l~~la~s~~P  312 (336)
T d1lsha1         280 --------VSMVAVRLRREPNLQVASFVYSQMRSLSRSSNP  312 (336)
T ss_dssp             --------HHHHHHHHTTCSCHHHHHHHHHHHHHHTTCCSG
T ss_pred             --------HHHHHHHHHhCcHHHHHHHHHHHHHHHHhCCCc
Confidence                    33444545 468999999999999999987664

>d2bnxa1 a.118.1.23 (A:133-475) Diaphanous protein homolog 1, Diap1 (Dia1, DRF1) {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Diap1 N-terninal region-like
domain: Diaphanous protein homolog 1, Diap1 (Dia1, DRF1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.06  E-value=0.86  Score=38.62  Aligned_cols=163  Identities=10%  Similarity=0.112  Sum_probs=103.9

Q ss_pred             hhHHHHHHhCCChHHHHhcccCCCCcccccCCCcchHHHHHHHHHHHHHhcCChhhHHHHH-hcCcHHHHHHHHhccccC
Q 015851           94 EEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIV-DNGALSHLVNLLKRHMDS  172 (399)
Q Consensus        94 ~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~i~-~~~~i~~L~~~L~~~~~~  172 (399)
                      ..|...| ..+|+..|+.+|..-..... ......+...+..+++||..+..+..+...+. ..+++..++..+.+... 
T Consensus        36 ~sWv~~F-~~~G~~~L~~~L~~l~~~~~-~~~~~~d~~~e~e~l~CLkalmn~~~G~~~vl~~~~~i~~l~~~L~s~~~-  112 (343)
T d2bnxa1          36 VSWVQTF-GAEGLASLLDILKRLHDEKE-ETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVP-  112 (343)
T ss_dssp             HHHHHHH-HHHHHHHHHHHHHHHHTCCT-TTCCTTHHHHHHHHHHHHHHHTSSHHHHHHHHHSSSHHHHHHHTCCTTSH-
T ss_pred             chHHHHH-HhccHHHHHHHHHHHHhhcc-cccccccHHHHHHHHHHHHHHhccHHHHHHHHcChHHHHHHHHccCCCch-
Confidence            5566666 56677778877742110000 01123345788899999999997666665554 56788888888876654 


Q ss_pred             ccccccHHHHHHHHHHHHHHhhcC--chhHH----------HHHhcCChHHHHHhhcCC-CHHHHHHHHHHHHHhhcCCh
Q 015851          173 NCSRAVNSVIRRAADAITNLAHEN--SSIKT----------RVRMEGGIPPLVELLEFT-DTKVQRAAAGALRTLAFKND  239 (399)
Q Consensus       173 ~~~~~~~~~~~~a~~~L~~l~~~~--~~~~~----------~~~~~~~i~~L~~ll~~~-~~~v~~~a~~~L~~L~~~~~  239 (399)
                             .++..+..+|..+|...  +....          ...+.+-+..++..+.+. +.+.+..++..+..+..+.+
T Consensus       113 -------~tr~~a~elL~~lc~~~~~~~g~~~vL~Al~~~~~~~e~~RF~~lv~~l~~~~~~ey~~a~m~lIN~li~~~~  185 (343)
T d2bnxa1         113 -------NMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAE  185 (343)
T ss_dssp             -------HHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHHTSTTSCHHHHHHHHHHHHHHHTTCS
T ss_pred             -------HHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHhcCCCcHHHHHHHHhccccHHHHHHHHHHHHHHHcCcc
Confidence                   78888999999888532  11111          122335567888877765 47888888888888887555


Q ss_pred             h------hHHHHHhcCCHHHHHHhhcCCCHHHH
Q 015851          240 E------NKNQIVECNALPTLILMLRSEDSAIH  266 (399)
Q Consensus       240 ~------~~~~~~~~~~~~~L~~ll~~~~~~v~  266 (399)
                      +      .+.++...|+.+.+-++=..+++.+.
T Consensus       186 dl~~R~~lR~E~~~~Gl~~il~~l~~~~~~~L~  218 (343)
T d2bnxa1         186 ELDFRVHIRSELMRLGLHQVLQELREIENEDMK  218 (343)
T ss_dssp             CHHHHHHHHHHHHHTTHHHHHHHHTTCCCHHHH
T ss_pred             cHHHHHHHHHHHHHCChHHHHHHHHccCChHHH
Confidence            4      23446667766665555444555444

>d2bnxa1 a.118.1.23 (A:133-475) Diaphanous protein homolog 1, Diap1 (Dia1, DRF1) {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Diap1 N-terninal region-like
domain: Diaphanous protein homolog 1, Diap1 (Dia1, DRF1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=91.57  E-value=3.3  Score=34.75  Aligned_cols=145  Identities=14%  Similarity=0.221  Sum_probs=98.2

Q ss_pred             hcCChHHHHHhhcC-----------CCHHHHHHHHHHHHHhhcCChhhHHHHHh-cCCHHHHHHhhcCCCHHHHHHHHHH
Q 015851          205 MEGGIPPLVELLEF-----------TDTKVQRAAAGALRTLAFKNDENKNQIVE-CNALPTLILMLRSEDSAIHYEAVGV  272 (399)
Q Consensus       205 ~~~~i~~L~~ll~~-----------~~~~v~~~a~~~L~~L~~~~~~~~~~~~~-~~~~~~L~~ll~~~~~~v~~~a~~~  272 (399)
                      ..+|+..|+.+|..           .+......+++||..+.. +..+...+.. .+++..++..+.++.+.++..|...
T Consensus        43 ~~~G~~~L~~~L~~l~~~~~~~~~~~d~~~e~e~l~CLkalmn-~~~G~~~vl~~~~~i~~l~~~L~s~~~~tr~~a~el  121 (343)
T d2bnxa1          43 GAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMN-NKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKL  121 (343)
T ss_dssp             HHHHHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHHHHTS-SHHHHHHHHHSSSHHHHHHHTCCTTSHHHHHHHHHH
T ss_pred             HhccHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHhc-cHHHHHHHHcChHHHHHHHHccCCCchHHHHHHHHH
Confidence            34566666666521           125678889999999997 5666666555 6789999999999999999999999


Q ss_pred             HHHhhcCC--hhHHHHH----------HHCCCcHHHHHhhcCC-ChHHHHHHHHHHHHhhccChh------hHHHHHhcC
Q 015851          273 IGNLVHSS--PNIKKEV----------LAAGALQPVIGLLSSC-CSESQREAALLLGQFAATDSD------CKVHIVQRG  333 (399)
Q Consensus       273 L~~l~~~~--~~~~~~~----------~~~~~l~~L~~lL~~~-~~~v~~~a~~~L~~l~~~~~~------~~~~l~~~g  333 (399)
                      |..+|...  +.+...+          .+.+-+..++..+... +.+.+..++..+..+..+.++      .+..+...|
T Consensus       122 L~~lc~~~~~~~g~~~vL~Al~~~~~~~e~~RF~~lv~~l~~~~~~ey~~a~m~lIN~li~~~~dl~~R~~lR~E~~~~G  201 (343)
T d2bnxa1         122 LSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVHIRSELMRLG  201 (343)
T ss_dssp             HHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHHTSTTSCHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHTT
T ss_pred             HHHHHhccCCCchHHHHHHHHHHHHHhcCCCcHHHHHHHHhccccHHHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHCC
Confidence            99998532  1222222          2345678888888754 457777777777777755443      344566678


Q ss_pred             CHHHHHHhhCCCCHHHH
Q 015851          334 AVRPLIEMLQSPDVQLR  350 (399)
Q Consensus       334 ~v~~L~~ll~~~~~~v~  350 (399)
                      +.+.+-++-...++.+.
T Consensus       202 l~~il~~l~~~~~~~L~  218 (343)
T d2bnxa1         202 LHQVLQELREIENEDMK  218 (343)
T ss_dssp             HHHHHHHHTTCCCHHHH
T ss_pred             hHHHHHHHHccCChHHH
Confidence            77766665555555543

>d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Exportin Cse1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=91.22  E-value=2.5  Score=40.67  Aligned_cols=181  Identities=13%  Similarity=0.134  Sum_probs=97.1

Q ss_pred             hhHHHHHHHHHHHHHHcCC--hhHHHHHHhCCChHHHHhcccCCCCcccccCCCcchHHHHHHHHHHHHHhcCChhh---
Q 015851           75 ADRAAAKRATHVLAELAKN--EEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEH---  149 (399)
Q Consensus        75 ~~~~~~~~a~~~L~~l~~~--~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~---  149 (399)
                      ..+.+|..++|.++..+..  ++...     .+++.++.+|.+++.            .++..|++++..++.....   
T Consensus       470 ~~~~lr~~~~~~i~~~~~~~~~~~~~-----~~~~~l~~~L~~~~~------------~V~~~a~~al~~~~~~~~~~~~  532 (959)
T d1wa5c_         470 PHIILRVDAIKYIYTFRNQLTKAQLI-----ELMPILATFLQTDEY------------VVYTYAAITIEKILTIRESNTS  532 (959)
T ss_dssp             SCHHHHHHHHHHHHHTGGGSCHHHHH-----HHHHHHHHHTTCSCH------------HHHHHHHHHHHHHTTCBSCSSS
T ss_pred             chHHHHHHHHHHHHHHHhhccHHHHH-----HHHHHHHHHhCCCch------------hHHHHHHHHHHHHHHhhccccc
Confidence            4567899999999998874  33322     358889999987655            7888999999998832110   


Q ss_pred             ------HHHHHh--cCcHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhhc-CchhHHHHHhcCChHHHHHhh----
Q 015851          150 ------QQLIVD--NGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHE-NSSIKTRVRMEGGIPPLVELL----  216 (399)
Q Consensus       150 ------~~~i~~--~~~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~-~~~~~~~~~~~~~i~~L~~ll----  216 (399)
                            .+.+..  ...+..++..+..........   .....++.++..+... .+......  ...++.+...+    
T Consensus       533 ~~~~~~~~~l~p~l~~ll~~L~~~l~~~~~~~~~~---~~~~~ll~~l~~ii~~~~~~~~~~~--~~i~~~l~~~~~~~~  607 (959)
T d1wa5c_         533 PAFIFHKEDISNSTEILLKNLIALILKHGSSPEKL---AENEFLMRSIFRVLQTSEDSIQPLF--PQLLAQFIEIVTIMA  607 (959)
T ss_dssp             CCBSSCGGGTTTTHHHHHHHHHHHHHTTCCCHHHH---TSCHHHHHHHHHHHHHHTTTTGGGH--HHHHHHHHHHHHHHT
T ss_pred             chhhccHHHHHhhHHHHHHHHHHHHHhhcchhhhH---HHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHh
Confidence                  000000  013344555554333211000   0112344455444421 11111100  11223333332    


Q ss_pred             cC-CCHHHHHHHHHHHHHhhcCC-hhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhc
Q 015851          217 EF-TDTKVQRAAAGALRTLAFKN-DENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVH  278 (399)
Q Consensus       217 ~~-~~~~v~~~a~~~L~~L~~~~-~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~  278 (399)
                      ++ .++........++..+.... ++....+. ...+|.+...+..........+...+..+..
T Consensus       608 ~~~~~~~~~~~~~e~l~~l~~~~~~~~~~~l~-~~l~p~i~~~~~~~~~~~~~~~~~l~~~~~~  670 (959)
T d1wa5c_         608 KNPSNPRFTHYTFESIGAILNYTQRQNLPLLV-DSMMPTFLTVFSEDIQEFIPYVFQIIAFVVE  670 (959)
T ss_dssp             TSCCCHHHHHHHHHHHHHHHHTSCGGGHHHHH-HHHHHHHHHHHHTTCTTTHHHHHHHHHHHHH
T ss_pred             cCccchHHHHHHHHHHHHHHHhcCchhHHHHH-HHHHHHHHHHHhccchhHHHHHHHHHHHHHH
Confidence            33 24667777777888776532 33333333 3467888888877666666667766666553

>d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Exportin Cse1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=88.47  E-value=0.92  Score=43.97  Aligned_cols=124  Identities=15%  Similarity=0.077  Sum_probs=87.5

Q ss_pred             HHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHHHhccccCccccccHHHHHHHHHHHHHHhhcC-----------chh
Q 015851          131 EVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHEN-----------SSI  199 (399)
Q Consensus       131 ~~~~~a~~~L~~l~~~~~~~~~i~~~~~i~~L~~~L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~-----------~~~  199 (399)
                      +.+++|-.-|..+..+|         |+...|++++.+.+.+.      .++..|+-.|.|.....           +..
T Consensus        18 ~~~k~Ae~~L~~~~~~p---------~f~~~L~~i~~~~~~~~------~iR~~A~i~lKn~i~~~W~~~~~~~~i~~e~   82 (959)
T d1wa5c_          18 STAKTSERNLRQLETQD---------GFGLTLLHVIASTNLPL------STRLAGALFFKNFIKRKWVDENGNHLLPANN   82 (959)
T ss_dssp             GGHHHHHHHHHHHHTST---------THHHHHHHHHHCTTSCH------HHHHHHHHHHHHHHHHHSBCSSSCBSSCHHH
T ss_pred             HHHHHHHHHHHHHHcCC---------CHHHHHHHHHhcCCCCH------HHHHHHHHHHHHHHHHhcccccccCCCCHHH
Confidence            56778888888887655         56777888887655432      78888888888887421           111


Q ss_pred             HHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHhhcCChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhhc
Q 015851          200 KTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVH  278 (399)
Q Consensus       200 ~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~  278 (399)
                      +..+     -..++..+.+++..++...+.+++.++..  +.-.  ...+.++.+++.++++++.....++.++..++.
T Consensus        83 k~~I-----k~~ll~~l~~~~~~ir~~l~~~i~~I~~~--d~p~--~Wp~ll~~l~~~l~s~~~~~~~~~L~~l~~i~k  152 (959)
T d1wa5c_          83 VELI-----KKEIVPLMISLPNNLQVQIGEAISSIADS--DFPD--RWPTLLSDLASRLSNDDMVTNKGVLTVAHSIFK  152 (959)
T ss_dssp             HHHH-----HHHHHHHHHHSCHHHHHHHHHHHHHHHHH--HSTT--TCTTHHHHHHTTCCSSCTTHHHHHHHHHHHHHG
T ss_pred             HHHH-----HHHHHHHHhCCcHHHHHHHHHHHHHHHHH--hCcc--ccHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence            2212     23456666677888999999999999862  1100  135678889999998888888889999988873