Citrus Sinensis ID: 015853

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------40
Protein Sequence
MPESMSISVNGQSQVPPGFRFHPTEEELLHYYLRKKVSSEKIDLDVIRDVDLNKLEPWDIQEKCKIGSTPQSDWYFFSHKDKKYPTGTRTNRATAAGFWKATGRDKVIHSNCRRIGMRKTLVFYKGRAPHGQKSDWIMHEYRLDDNPNEITNVSNVMGDATQEESWVVCRIFKKKDHHKTLGSPTSSSINGNRMFNSCNEGSLEQILQHMGGTCKEESDEPNNNLRLYRAILGTGTGGFDHNDPFLKLPSLRSPNSSGSQNNYHHYPMPMVTEIEGSVSNQVSSSNLNNSVYHTETESSSGLTSWAALDRLVASQLNGQTETSRQLACFNEPTMAPYCNPTDDDHQHDFQLPPLRSSSILSSNSSYHGSEDYNNEIDIWNYTRSSSSSDPLCHASNNRL
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccHHHHHHHHHHHHcccccccccEEcccccccccccccccccccccccccEEcccccccccccccccccccccccccccccccccccccEEEEEEEEcEEcccccccccccccEEEEcccccccccccccccccccccccccEEEEEEEEcccccccccccccccccccccccccccccHHHHHHcccccccccccccccHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccccccHHHHHHHHHHHHHccccccccEEHHcccccccccccHHHccccccccccEEEEccccccccccccccHHHHcccEEcccccccEcccccEEEEEEEEEEEcccccccccccEEEEEEEcccccccccccccccccccccccEEEEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHccccccccccccHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHcccccccccccccccccccccccccccHHHHcccccHHHcccccccccccccccccccccccHHHccccccccccccccccccc
Coil and Loop (DISEMBL)
mpesmsisvngqsqvppgfrfhptEEELLHYYLRKKvssekidldvirdvdlnklepwdiqekckigstpqsdwyffshkdkkyptgtrtnrataagfwkatgrdkvihsncrrigmrktlvfykgraphgqksdwimheyrlddnpneitnvsnvmgdatqEESWVVCRIFkkkdhhktlgsptsssingnrmfnscneGSLEQILQHMggtckeesdepnnNLRLYRAILgtgtggfdhndpflklpslrspnssgsqnnyhhypmpmvteiegsvsnqvsssnlnnsvyhtetesssgltSWAALDRLVASQLngqtetsrqlacfneptmapycnptdddhqhdfqlpplrsssilssnssyhgsedynneidiwnytrsssssdplchasnnrl
Flexible Loop (DISEMBL)
mpesmsisvngqsqvppgfRFHPTEEELLHYYLRKkvssekidldvirdvdlnklepwdiqekckigstpqsdwyffshkdkkyptgtrtnrataagfwkatgrdkvihsncrrigmrktlvfykgraphgqksDWIMHEYRLDDNPNEITNVSNVMGDATQEESWVVCRIFkkkdhhktlgsptsssingnRMFNSCNEGSLEQILQHMGGTCKEESDEPNNNLRLYRAILGTGTGGFDHNDPFLKLPSLRSPNSSGSQNNYHHYPMPMVTEIEGSVSNQVSSSNLNNSVYHTETESSSGLTSWAALDRLVASQLNGQTETSRQLACFNEPTMAPYCNPTDDDHQHDFQLPPLRSSSILSSNSSYHGSEDYNNEIDIWNYtrsssssdplchasnnrl
Low Complexity Region (SEG)
MPESMSISVNGQSQVPPGFRFHPTEEELLHYYLRKKVSSEKIDLDVIRDVDLNKLEPWDIQEKCKIGSTPQSDWYFFSHKDKKYPtgtrtnrataagFWKATGRDKVIHSNCRRIGMRKTLVFYKGRAPHGQKSDWIMHEYRLDDNPNEITNVSNVMGDATQEESWVVCRIFKKKDHHKTLGSPTSSSINGNRMFNSCNEGSLEQILQHMGGTCKEESDEPNNNLRLYRAILGTGTGGFDHNDPFLKLPSLRSPNSSGSQNNYHHYPMPMVTEIEGsvsnqvsssnlnnsvYHTETESSSGLTSWAALDRLVASQLNGQTETSRQLACFNEPTMAPYCNPTDDDHQHDFQLPPLRsssilssnssyhgsEDYNNEIDIWNYTRSSSSSDPLCHASNNRL
Disordered region (IsUnstruct)
********************FHPTEEELLHYYLRKKVSSEKIDLDVIRDVDLNKLEPWDIQEKCKIGSTPQSDWYFFSHKDKKYPTGTRTNRATAAGFWKATGRDKVIHSNCRRIGMRKTLVFYKGRAPHGQKSDWIMHEYRLDDNPNEITNVSNVMGDATQEESWVVCRIFKK**************************************************LRLYRAILGTGTGGFDHN*************************************************************SWAALDRLVA************LACFN********************************************EIDIWNY******************
Disordered Region (DISOPRED)
****************PGFRFHPTEEELLHYYLRKKVSSEKIDLDVIRDVDLNKLEPWDIQEKCKIGSTPQSDWYFFSHKDKKYPTGTRTNRATAAGFWKATGRDKVIHSNCRRIGMRKTLVFYKGRAPHGQKSDWIMHEYRLDDN*****************ESWVVCRIFK***********************************************************************************************************************************WAALDRLV***************************************************************IDIW********************
Disordered Region (DISEMBL)
*************QVPPGFRFHPTEEELLHYYLRKKVSSEKIDLDVIRDVDLNKLEPWDIQEKCKIGSTPQSDWYFFSHKDKKYPTGTRTNRATAAGFWKATGRDKVIHSNCRRIGMRKTLVFYKGRAPHGQKSDWIMHEYRLDDNPNEITNVSNVMGDATQEESWVVCRIFKKK***********SSINGNRMFNSCNEGSLEQILQHMG*********PNNNLRLYRAILGTGTGGFDHNDPFLKLPSLRSPNSSGSQNNYHHYPMPMVTEIEGSVSNQVSSSNLNNSV***********TSWAALDRLVASQLNGQTETSRQLACFNEPTMAPYCNPTDDDHQHDFQLPPLRSSSILSSNSSYHGSEDYNNEIDIWNYTR****************
Disordered Region (DISPRO)
**************VPPGFRFHPTEEELLHYYLRKKVSSEKIDLDVIRDVDLNKLEPWDIQEKCKIGSTPQSDWYFFSHKDKKYPTGTRTNRATAAGFWKATGRDKVIHSNCRRIGMRKTLVFYKGRAPHGQKSDWIMHEYRLDD*****************EESWVVCRIFKKKD******************************************DEPNNNLRLYRAILGTGTGGFDHNDPFLKLPSLRSPNS********************************************GLTSWAALDRLVASQLN********************************************************NEID*W*YTRSSSSSDPLC*******
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MPESMSISVNGQSQVPPGFRFHPTEEELLHYYLRKKVSSEKIDLDVIRDVDLNKLEPWDIQEKCKIGSTPQSDWYFFSHKDKKYPTGTRTNRATAAGFWKATGRDKVIHSNCRRIGMRKTLVFYKGRAPHGQKSDWIMHEYRLDDNPNEITNVSNVMGDATQEESWVVCRIFKKKDHHKTLGSPTSSSINGNRMFNSCNEGSLEQILQHMGGTCKEESDEPNNNLRLYRAILGTGTGGFDHNDPFLKLPSLRSPNSSGSQNNYHHYPMPMVTEIEGSVSNQVSSSNLNNSVYHTETESSSGLTSWAALDRLVASQLNGQTETSRQLACFNEPTMAPYCNPTDDDHQHDFQLPPLRSSSILSSNSSYHGSEDYNNEIDIWNYTRSSSSSDPLCHASNNRL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	399	2.2.26 [Sep-21-2011]
Q84WP6	365	NAC domain-containing pro	yes	no	0.854	0.934	0.567	1e-113
Q9M274	334	NAC domain-containing pro	no	no	0.714	0.853	0.542	2e-90
Q9LPI7	358	NAC domain-containing pro	no	no	0.709	0.790	0.536	7e-86
Q9MA17	371	Protein SOMBRERO OS=Arabi	no	no	0.413	0.444	0.723	9e-74
Q9SV87	341	Protein BEARSKIN1 OS=Arab	no	no	0.701	0.821	0.468	1e-72
Q9C878	305	Protein BEARSKIN1 OS=Arab	no	no	0.421	0.550	0.655	3e-69
Q9FWX2	395	NAC domain-containing pro	no	no	0.862	0.870	0.394	6e-68
Q5Z6B6	276	NAC domain-containing pro	no	no	0.403	0.583	0.687	6e-68
O49255	268	NAC transcription factor	no	no	0.421	0.626	0.491	2e-46
Q9FLJ2	336	NAC domain-containing pro	no	no	0.418	0.497	0.511	3e-46

>sp|Q84WP6|NAC43_ARATH NAC domain-containing protein 43 OS=Arabidopsis thaliana GN=NAC043 PE=2 SV=2

 Score =  407 bits (1047), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 236/416 (56%), Positives = 285/416 (68%), Gaps = 75/416 (18%)

Query: 1   MPESMSISVNGQSQVPPGFRFHPTEEELLHYYLRKKVSSEKIDLDVIRDVDLNKLEPWDI 60
           M +SMSISVNGQSQVPPGFRFHPTEEELL YYLRKKV+S +IDLDVIRDVDLNKLEPWDI
Sbjct: 2   MSKSMSISVNGQSQVPPGFRFHPTEEELLQYYLRKKVNSIEIDLDVIRDVDLNKLEPWDI 61

Query: 61  QEKCKIGSTPQSDWYFFSHKDKKYPTGTRTNRATAAGFWKATGRDKVIHSNCRRIGMRKT 120
           QE CKIG+TPQ+DWYFFSHKDKKYPTGTRTNRATAAGFWKATGRDK+I+SN RRIGMRKT
Sbjct: 62  QEMCKIGTTPQNDWYFFSHKDKKYPTGTRTNRATAAGFWKATGRDKIIYSNGRRIGMRKT 121

Query: 121 LVFYKGRAPHGQKSDWIMHEYRLDDN---PNEIT--NVSNVMGDATQEESWVVCRIFKKK 175
           LVFYKGRAPHGQKSDWIMHEYRLDDN   P ++T   V +++G+A+Q+E WVVCRIFKKK
Sbjct: 122 LVFYKGRAPHGQKSDWIMHEYRLDDNIISPEDVTVHEVVSIIGEASQDEGWVVCRIFKKK 181

Query: 176 DHHKTLGSPT-SSSING---------NRMFNSCNEGSLEQILQHMGGTCKEESDEPNNNL 225
           + HKTL SP   +S++G         +++F   NE +L+Q L+ MG +CKEE       L
Sbjct: 182 NLHKTLNSPVGGASLSGGGDTPKTTSSQIF---NEDTLDQFLELMGRSCKEE-------L 231

Query: 226 RLYRAILGTGTGGFDHNDPFLKLPSLRSPNSSGSQNNYHHYPMPMVTEIEGSVSNQVSSS 285
            L               DPF+KLP+L SPNS  + NN H                 VSS 
Sbjct: 232 NL---------------DPFMKLPNLESPNSQ-AINNCH-----------------VSSP 258

Query: 286 NLNNSVYHTETESSSGLTSWAALDRLVASQLNGQTETSRQLACFNEPTMAPYCNPTDDDH 345
           + N++++ +    +S +TSWAALDRLVASQLNG   TS  +   NE  +          H
Sbjct: 259 DTNHNIHVSNVVDTSFVTSWAALDRLVASQLNG--PTSYSITAVNESHVG---------H 307

Query: 346 QHDFQLPPLRSS-SILSSNSSYHG--SEDYNNEIDIWNYTRSSSSSD--PLCHASN 396
            H   LP +RS    L+ ++SYH   +++Y  E+++WN T SS SS   P CH SN
Sbjct: 308 DH-LALPSVRSPYPSLNRSASYHAGLTQEYTPEMELWNTTTSSLSSSPGPFCHVSN 362

Transcription activator of genes involved in biosynthesis of secondary walls. Together with NST2 and NST3, required for the secondary cell wall thickening of sclerenchymatous fibers, secondary xylem (tracheary elements), and of the anther endocethium, which is necessary for anther dehiscence. May also regulates the secondary cell wall lignification of other tissues.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9M274|NAC66_ARATH NAC domain-containing protein 66 OS=Arabidopsis thaliana GN=NAC066 PE=2 SV=1

 Score =  333 bits (853), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 185/341 (54%), Positives = 226/341 (66%), Gaps = 56/341 (16%)

Query: 5   MSISVNGQSQVPPGFRFHPTEEELLHYYLRKKVSSEKIDLDVIRDVDLNKLEPWDIQEKC 64
           M+ISVNGQSQVPPGFRFHPTEEELL YYLRKK+S+ KIDLDVI D+DLNKLEPWDIQE C
Sbjct: 1   MNISVNGQSQVPPGFRFHPTEEELLKYYLRKKISNIKIDLDVIPDIDLNKLEPWDIQEMC 60

Query: 65  KIGSTPQSDWYFFSHKDKKYPTGTRTNRATAAGFWKATGRDKVIHSNCRRIGMRKTLVFY 124
           KIG+TPQ+DWYF+SHKDKKYPTGTRTNRAT  GFWKATGRDK I++N  RIGMRKTLVFY
Sbjct: 61  KIGTTPQNDWYFYSHKDKKYPTGTRTNRATTVGFWKATGRDKTIYTNGDRIGMRKTLVFY 120

Query: 125 KGRAPHGQKSDWIMHEYRLDDNP------NEITNV--SNVMGDATQEESWVVCRIFKKKD 176
           KGRAPHGQKSDWIMHEYRLD++       +   NV   +V+G    +E WVVCR+FKK +
Sbjct: 121 KGRAPHGQKSDWIMHEYRLDESVLISSCGDHDVNVETCDVIG---SDEGWVVCRVFKKNN 177

Query: 177 HHKTLGSPTSSSINGNRMFNSCNEGSLEQILQHMGGTCKEESDEPNNNLRLYRAILGTGT 236
             K + S + +S      F   NE ++EQ+L+ MG +CK E             +L    
Sbjct: 178 LCKNMISSSPASSVKTPSF---NEETIEQLLEVMGQSCKGE------------IVL---- 218

Query: 237 GGFDHNDPFLKLPSLRSPNSSGSQNNYHHYPMPMVTEIEGSVSNQVSSSNLNNSVYHTET 296
                 DPFLKLP+L   N++             +T  +  + +QV      N+ + ++ 
Sbjct: 219 ------DPFLKLPNLECHNNT------------TITSYQWLIDDQV------NNCHVSKV 254

Query: 297 ESSSGLTSWAALDRLVASQLNGQTETSRQLACFNEPTMAPY 337
              S +TSWAALDRLVASQLNG    S  +   NE + +PY
Sbjct: 255 MDPSFITSWAALDRLVASQLNG--PNSYSIPAVNETSQSPY 293

Transcription activator of genes involved in biosynthesis of secondary walls. Together with NST1, required for the secondary cell wall thickening of the anther endocethium, which is necessary for anther dehiscence. May also regulates the secondary cell wall lignification of other tissues such as tracheary elements.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LPI7|NAC12_ARATH NAC domain-containing protein 12 OS=Arabidopsis thaliana GN=NAC012 PE=2 SV=1

 Score =  318 bits (814), Expect = 7e-86,   Method: Compositional matrix adjust.
 Identities = 175/326 (53%), Positives = 212/326 (65%), Gaps = 43/326 (13%)

Query: 5   MSISVNGQSQVPPGFRFHPTEEELLHYYLRKKVSSEKIDLDVIRDVDLNKLEPWDIQEKC 64
           +++S+NGQS+VPPGFRFHPTEEELLHYYLRKKV+S+KIDLDVIR+VDLNKLEPWDIQE+C
Sbjct: 6   VNLSINGQSKVPPGFRFHPTEEELLHYYLRKKVNSQKIDLDVIREVDLNKLEPWDIQEEC 65

Query: 65  KIGSTPQSDWYFFSHKDKKYPTGTRTNRATAAGFWKATGRDKVIHSNCRRIGMRKTLVFY 124
           +IGSTPQ+DWYFFSHKDKKYPTGTRTNRAT AGFWKATGRDK+I S  RRIG+RKTLVFY
Sbjct: 66  RIGSTPQNDWYFFSHKDKKYPTGTRTNRATVAGFWKATGRDKIICSCVRRIGLRKTLVFY 125

Query: 125 KGRAPHGQKSDWIMHEYRLDDNP--NEITNVSNVMGDATQEESWVVCRIFKKKDHHKTLG 182
           KGRAPHGQKSDWIMHEYRLDD P  N   +V      +  EE WVVCR+F+KK++ K   
Sbjct: 126 KGRAPHGQKSDWIMHEYRLDDTPMSNGYADVVTEDPMSYNEEGWVVCRVFRKKNYQKIDD 185

Query: 183 SP--TSSSI-------NGNRMFNSCNEGSLEQILQHMGGTCKEESDEPNNNLRLYRAILG 233
            P  T SS+        G    N+ N   L+ +L +M        D   +N+ +  +   
Sbjct: 186 CPKITLSSLPDDTEEEKGPTFHNTQNVTGLDHVLLYM--------DRTGSNICMPESQTT 237

Query: 234 TGTGGFDHNDP--FLKLPSLRSPNSSGSQNNYHHYPMPMVTEIEGSVSNQVSSSNLNNSV 291
           T      H D   F++LPSL +P S    +     P                 S L+ S 
Sbjct: 238 T-----QHQDDVLFMQLPSLETPKSESPVDQSFLTP-----------------SKLDFSP 275

Query: 292 YHTETESSSGLTSWAALDRLVASQLN 317
              +       ++WA+LDRLVA QLN
Sbjct: 276 VQEKITERPVCSNWASLDRLVAWQLN 301

Transcription activator of genes involved in biosynthesis of secondary walls. Together with NST1, required for the secondary cell wall thickening and lignification of sclerenchymatous fibers and secondary xylem vessels (tracheary elements). Seems to repress the secondary cell wall thickening of xylary fibers. May also regulates the secondary cell wall lignification of other tissues. Binds to and activates the promoter of MYB46.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9MA17|SMB_ARATH Protein SOMBRERO OS=Arabidopsis thaliana GN=SMB PE=1 SV=1

 Score =  277 bits (709), Expect = 9e-74,   Method: Compositional matrix adjust.
 Identities = 128/177 (72%), Positives = 150/177 (84%), Gaps = 12/177 (6%)

Query: 4   SMSISVNGQSQVPPGFRFHPTEEELLHYYLRKKVSSEKIDLDVIRDVDLNKLEPWDIQEK 63
           S +++  GQ  VPPGFRFHPTEEELL+YYL+KKVS E IDLDVIR+VDLNKLEPW+++EK
Sbjct: 6   SSTVAGGGQLSVPPGFRFHPTEEELLYYYLKKKVSYEPIDLDVIREVDLNKLEPWELKEK 65

Query: 64  CKIGSTPQSDWYFFSHKDKKYPTGTRTNRATAAGFWKATGRDKVIHSN-CRRIGMRKTLV 122
           C+IGS PQ++WYFFSHKDKKYPTGTRTNRATAAGFWKATGRDK IH N  ++IG+RKTLV
Sbjct: 66  CRIGSGPQNEWYFFSHKDKKYPTGTRTNRATAAGFWKATGRDKSIHLNSSKKIGLRKTLV 125

Query: 123 FYKGRAPHGQKSDWIMHEYRLDDNPNEITNVSNVMGDATQEESWVVCRIFKKKDHHK 179
           FY GRAPHGQK++WIMHEYRLDD+ NEI           QE+ WVVCR+FKKK+H +
Sbjct: 126 FYTGRAPHGQKTEWIMHEYRLDDSENEI-----------QEDGWVVCRVFKKKNHFR 171

Transcription regulator. Together with BRN1 and BRN2, regulates cellular maturation of root cap. Represses stem cell-like divisions in the root cap daughter cells, and thus promotes daughter cell fate. Inhibits expression of its positive regulator FEZ in a feedback loop for controlled switches in cell division plane. Promotes the expression of genes involved in secondary cell walls (SCW) biosynthesis.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SV87|BRN2_ARATH Protein BEARSKIN1 OS=Arabidopsis thaliana GN=BRN2 PE=2 SV=1

 Score =  274 bits (700), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 163/348 (46%), Positives = 203/348 (58%), Gaps = 68/348 (19%)

Query: 5   MSISVNGQSQVPPGFRFHPTEEELLHYYLRKKVSSEKIDLDVIRDVDLNKLEPWDIQEKC 64
           M  S NG   VPPGFRFHPT+EELLHYYL+KK+S +K +++VIR+VDLNKLEPWD+QE+C
Sbjct: 1   MGSSSNGG--VPPGFRFHPTDEELLHYYLKKKISYQKFEMEVIREVDLNKLEPWDLQERC 58

Query: 65  KIGSTPQSDWYFFSHKDKKYPTGTRTNRATAAGFWKATGRDKVIHSNCRRIGMRKTLVFY 124
           KIGSTPQ++WYFFSHKD+KYPTG+RTNRAT AGFWKATGRDK I ++ ++IGMRKTLVFY
Sbjct: 59  KIGSTPQNEWYFFSHKDRKYPTGSRTNRATHAGFWKATGRDKCIRNSYKKIGMRKTLVFY 118

Query: 125 KGRAPHGQKSDWIMHEYRLDDNPNEITNVSNVMGDATQEESWVVCRIFKKKDHHKTLGSP 184
           KGRAPHGQK+DWIMHEYRL+D  +   N S        E+ WVVCR+F KK+        
Sbjct: 119 KGRAPHGQKTDWIMHEYRLEDADDPQANPS--------EDGWVVCRVFMKKN-------- 162

Query: 185 TSSSINGNRMFNSCNEG--SLEQILQHMGGTCKEESDEPNNNLRL-----------YRAI 231
                    +F   NEG  S+  + QH         D  NNN  L           Y+ +
Sbjct: 163 ---------LFKVVNEGSSSINSLDQH-------NHDASNNNHALQARSFMHRDSPYQLV 206

Query: 232 LGTGTGGFDHNDPFLKL----PSLRSPNSSGSQNNYHHYPMPMVTEIEGSVS-----NQV 282
              G   F+ N P L L    P    P S G       Y   +  + E + S      Q 
Sbjct: 207 RNHGAMTFELNKPDLALHQYPPIFHKPPSLGFD-----YSSGLARDSESAASEGLQYQQA 261

Query: 283 SSSNLNNSVYHTETESS----SGLTSWAALDRLVASQLNGQTETSRQL 326
               L+  V   ET +S     GL  WA +DRLV   + G  ++SR +
Sbjct: 262 CEPGLD--VGTCETVASHNHQQGLGEWAMMDRLVTCHM-GNEDSSRGI 306

Transcription activator. Together with BRN1 and SMB, regulates cellular maturation of root cap. Promotes the expression of genes involved in secondary cell walls (SCW) biosynthesis.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C878|BRN1_ARATH Protein BEARSKIN1 OS=Arabidopsis thaliana GN=BRN1 PE=2 SV=1

 Score =  262 bits (669), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 118/180 (65%), Positives = 150/180 (83%), Gaps = 12/180 (6%)

Query: 15  VPPGFRFHPTEEELLHYYLRKKVSSEKIDLDVIRDVDLNKLEPWDIQEKCKIGSTPQSDW 74
           VPPGFRFHPT+EELLHYYL+KK+S EK +++VI++VDLNK+EPWD+Q++CKIGSTPQ++W
Sbjct: 8   VPPGFRFHPTDEELLHYYLKKKISYEKFEMEVIKEVDLNKIEPWDLQDRCKIGSTPQNEW 67

Query: 75  YFFSHKDKKYPTGTRTNRATAAGFWKATGRDKVIHSNCRRIGMRKTLVFYKGRAPHGQKS 134
           YFFSHKD+KYPTG+RTNRAT +GFWKATGRDK I ++ ++IGMRKTLVFYKGRAPHGQK+
Sbjct: 68  YFFSHKDRKYPTGSRTNRATHSGFWKATGRDKCIRNSYKKIGMRKTLVFYKGRAPHGQKT 127

Query: 135 DWIMHEYRLDDNPNEITNVSNVMGDATQEESWVVCRIFKKKDHHKTLGSPTSSSINGNRM 194
           DWIMHEYR++D             D   E+ WVVCR+FKKK+  K +G+   S+I+ NR+
Sbjct: 128 DWIMHEYRIEDTE-----------DDPCEDGWVVCRVFKKKNLFK-VGNDVGSNISNNRL 175

Transcription activator. Together with SMB and BRN2, regulates cellular maturation of root cap. Promotes the expression of genes involved in secondary cell walls (SCW) biosynthesis.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FWX2|NAC7_ARATH NAC domain-containing protein 7 OS=Arabidopsis thaliana GN=NAC007 PE=2 SV=2

 Score =  258 bits (659), Expect = 6e-68,   Method: Compositional matrix adjust.
 Identities = 166/421 (39%), Positives = 223/421 (52%), Gaps = 77/421 (18%)

Query: 9   VNGQSQVPPGFRFHPTEEELLHYYLRKKVSSEKIDLDVIRDVDLNKLEPWDIQEKCKIGS 68
           +N  S VPPGFRFHPT+EEL+ YYLRKKV+S++I++D I+D+DL K+EPWD+QE CKIG 
Sbjct: 1   MNSFSHVPPGFRFHPTDEELVDYYLRKKVASKRIEIDFIKDIDLYKIEPWDLQELCKIGH 60

Query: 69  TPQSDWYFFSHKDKKYPTGTRTNRATAAGFWKATGRDKVIHSNCRRIGMRKTLVFYKGRA 128
             QSDWYFFSHKDKKYPTGTRTNRAT AGFWKATGRDK I+     IGMRKTLVFYKGRA
Sbjct: 61  EEQSDWYFFSHKDKKYPTGTRTNRATKAGFWKATGRDKAIYLRHSLIGMRKTLVFYKGRA 120

Query: 129 PHGQKSDWIMHEYRLDDNPNEITNVSNVMGDATQEESWVVCRIFKKK-DHHKTLGSPTSS 187
           P+GQKSDWIMHEYRL+ + N             QEE WVVCR+FKK+    + +G   SS
Sbjct: 121 PNGQKSDWIMHEYRLETDEN----------GTPQEEGWVVCRVFKKRLAAVRRMGDYDSS 170

Query: 188 ----------------SINGNR-----------------MFNSCNEGSLEQILQHMGGTC 214
                             NG R                 M    N  +    L +    C
Sbjct: 171 PSHWYDDQLSFMASELETNGQRRILPNHHQQQQHEHQQHMPYGLNASAY--ALNNPNLQC 228

Query: 215 KEESDEPNNNLRLYRAILGTGTGGFDHNDPFLKLPSLRSPNSSGSQNNYHHYPMPMVTEI 274
           K+E +   N+L     +L       + +  FL+LP L SP      +N +  P    + I
Sbjct: 229 KQELELHYNHLVQRNHLLD------ESHLSFLQLPQLESPKIQQDNSNCNSLPYG-TSNI 281

Query: 275 EGSVSN-------------QVSSSNLNNSVYHTET---ESSSGLTSWAALDRLVASQLNG 318
           + + S+             Q++  N N S  +  +   +    +T W  LD+ VASQL+ 
Sbjct: 282 DNNSSHNANLQQSNIAHEEQLNQGNQNFSSLYMNSGNEQVMDQVTDWRVLDKFVASQLSN 341

Query: 319 QTETSRQLACFNEPTMAPYCNPTDDDHQHDFQLPPLRSSSILSSNSSYHGSEDYNNEIDI 378
           +   +   +  N        + ++ ++Q D +  P R+S +      Y  S   + +ID+
Sbjct: 342 EEAATASASIQNNAK-----DTSNAEYQVDEEKDPKRASDM---GEEYTASTSSSCQIDL 393

Query: 379 W 379
           W
Sbjct: 394 W 394

Transcription factor probably involved in xylem formation.

Arabidopsis thaliana (taxid: 3702)

>sp|Q5Z6B6|NAC76_ORYSJ NAC domain-containing protein 76 OS=Oryza sativa subsp. japonica GN=NAC76 PE=2 SV=2

 Score =  258 bits (659), Expect = 6e-68,   Method: Compositional matrix adjust.
 Identities = 119/173 (68%), Positives = 140/173 (80%), Gaps = 12/173 (6%)

Query: 10  NGQSQVPPGFRFHPTEEELLHYYLRKKVSSEKIDLDVIRDVDLNKLEPWDIQEKCKIGST 69
            G   VPPGFRFHPT+EELL+YYLRKKV+ E IDLDVIR++DLNKLEPWD++++C+IG+ 
Sbjct: 5   GGALSVPPGFRFHPTDEELLYYYLRKKVAYEAIDLDVIREIDLNKLEPWDLKDRCRIGTG 64

Query: 70  PQSDWYFFSHKDKKYPTGTRTNRATAAGFWKATGRDKVIH-SNCRRIGMRKTLVFYKGRA 128
           PQ++WYFFSHKDKKYPTGTRTNRAT AGFWKATGRDK I  +N  RIGMRKTLVFY GRA
Sbjct: 65  PQNEWYFFSHKDKKYPTGTRTNRATTAGFWKATGRDKAIFLANACRIGMRKTLVFYVGRA 124

Query: 129 PHGQKSDWIMHEYRLDDNPNEITNVSNVMGDATQEESWVVCRIFKKKDHHKTL 181
           PHG+K+DWIMHEYRLD +     NV        QE+ WVVCR+F KK + + L
Sbjct: 125 PHGKKTDWIMHEYRLDQD-----NVD------VQEDGWVVCRVFMKKSYQRGL 166

Oryza sativa subsp. japonica (taxid: 39947)

>sp|O49255|NAC29_ARATH NAC transcription factor 29 OS=Arabidopsis thaliana GN=NAC029 PE=2 SV=1

 Score =  186 bits (473), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 86/175 (49%), Positives = 118/175 (67%), Gaps = 7/175 (4%)

Query: 7   ISVNGQSQVPPGFRFHPTEEELLHYYLRKKVSSEKIDLDVIRDVDLNKLEPWDIQEKCKI 66
           + V  QS +PPGFRFHPT+EEL+ YYLR +  S+   + +I +VD+ K +PW + EK + 
Sbjct: 1   MEVTSQSTLPPGFRFHPTDEELIVYYLRNQTMSKPCPVSIIPEVDIYKFDPWQLPEKTEF 60

Query: 67  GSTPQSDWYFFSHKDKKYPTGTRTNRATAAGFWKATGRDKVIHSNCRRIGMRKTLVFYKG 126
           G   +++WYFFS +++KYP G R NRA  +G+WKATG DK IHS    +G++K LVFYKG
Sbjct: 61  G---ENEWYFFSPRERKYPNGVRPNRAAVSGYWKATGTDKAIHSGSSNVGVKKALVFYKG 117

Query: 127 RAPHGQKSDWIMHEYRLDDNPNEITNVSNVMGDATQEESWVVCRIFKKKDHHKTL 181
           R P G K+DWIMHEYRL D+    T  +  M    + + WV+CRI+KK+   K L
Sbjct: 118 RPPKGIKTDWIMHEYRLHDSRKASTKRNGSM----RLDEWVLCRIYKKRGASKLL 168

May function in the transition between active cell division and cell expansion.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FLJ2|NC100_ARATH NAC domain-containing protein 100 OS=Arabidopsis thaliana GN=NAC100 PE=2 SV=1

 Score =  186 bits (472), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 91/178 (51%), Positives = 119/178 (66%), Gaps = 11/178 (6%)

Query: 12  QSQVPPGFRFHPTEEELLHYYLRKKVSSEKIDLDVIRDVDLNKLEPWDIQEKCKIGSTPQ 71
           Q  +PPGFRFHPT+EEL+ +YL KKV         I +VDLNK EPW++    K+G   +
Sbjct: 13  QMDLPPGFRFHPTDEELITHYLHKKVLDTSFSAKAIGEVDLNKSEPWELPWMAKMG---E 69

Query: 72  SDWYFFSHKDKKYPTGTRTNRATAAGFWKATGRDKVIHSNCRRIGMRKTLVFYKGRAPHG 131
            +WYFF  +D+KYPTG RTNRAT AG+WKATG+DK I+     +GM+KTLVFY+GRAP G
Sbjct: 70  KEWYFFCVRDRKYPTGLRTNRATEAGYWKATGKDKEIYRGKSLVGMKKTLVFYRGRAPKG 129

Query: 132 QKSDWIMHEYRLDDNPNEITNVSNVMGDATQEESWVVCRIFKKKDHHKTLGSPTSSSI 189
           QK++W+MHEYRL+       +  N+   A  E  WV+CR+F+K    K +  P SS I
Sbjct: 130 QKTNWVMHEYRLEGK----FSAHNLPKTAKNE--WVICRVFQKSAGGKKI--PISSLI 179

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	399
224130664	379	NAC domain protein, IPR003441 [Populus t	0.937	0.986	0.665	1e-141
327397100	381	transcription factor [Populus trichocarp	0.934	0.979	0.663	1e-140
312618424	378	wood-associated NAC domain transcription	0.927	0.978	0.667	1e-140
225453610	390	PREDICTED: NAC domain-containing protein	0.949	0.971	0.655	1e-139
224068147	371	NAC domain protein, IPR003441 [Populus t	0.909	0.978	0.653	1e-138
255578226	348	NAC domain-containing protein, putative	0.849	0.974	0.742	1e-138
356559776	443	PREDICTED: NAC domain-containing protein	0.984	0.887	0.619	1e-134
356522480	400	PREDICTED: NAC domain-containing protein	0.899	0.897	0.639	1e-128
296089002	352	unnamed protein product [Vitis vinifera]	0.852	0.965	0.614	1e-118
225426558	405	PREDICTED: NAC domain-containing protein	0.937	0.923	0.567	1e-115

>gi|224130664|ref|XP_002320897.1| NAC domain protein, IPR003441 [Populus trichocarpa] gi|222861670|gb|EEE99212.1| NAC domain protein, IPR003441 [Populus trichocarpa]

 Score =  506 bits (1304), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 267/401 (66%), Positives = 308/401 (76%), Gaps = 27/401 (6%)

Query: 1   MPESMSISVNGQSQVPPGFRFHPTEEELLHYYLRKKVSSEKIDLDVIRDVDLNKLEPWDI 60
           M E+MSISVNGQSQVPPGFRFHPTEEELLHYYLRKKVS EKIDLDVIRDVDLNKLEPWDI
Sbjct: 1   MTENMSISVNGQSQVPPGFRFHPTEEELLHYYLRKKVSYEKIDLDVIRDVDLNKLEPWDI 60

Query: 61  QEKCKIGSTPQSDWYFFSHKDKKYPTGTRTNRATAAGFWKATGRDKVIHSNCRRIGMRKT 120
           QE+CKIG+TPQ+DWYFFSHKDKKYPTGTRTNRATAAGFWKATGRDKVI+S  +RIGMRKT
Sbjct: 61  QERCKIGTTPQNDWYFFSHKDKKYPTGTRTNRATAAGFWKATGRDKVIYSTGKRIGMRKT 120

Query: 121 LVFYKGRAPHGQKSDWIMHEYRLDDNPNEITNVSNVM-GDATQEESWVVCRIFKKKDHHK 179
           LVFYKGRAPHGQKSDWIMHEYRLDD+ ++ TNVSNVM  +A QEE WVVCRIFKKK+ +K
Sbjct: 121 LVFYKGRAPHGQKSDWIMHEYRLDDSTSD-TNVSNVMEEEAAQEEGWVVCRIFKKKNLNK 179

Query: 180 TLGSPTSSS-ING---NRMFNSCNEGSLEQILQHMGGTCKEESDEPNNNLRLYRAILGTG 235
           TL  P SSS I+    N+M +SC+EG+++Q   +MG TCKEE+   N+    Y   + T 
Sbjct: 180 TLDKPFSSSPISADTRNQMLSSCDEGTIDQTFHYMGRTCKEENVADNSATARYLRPVDTA 239

Query: 236 TGGFDHNDPFLKLPSLRSPNSSGSQNNYHHYPMPMVTEIEGSVSNQVSSSNLNNSVYHTE 295
              + H+D F+KLPSL SPNS  SQN Y     PM+T+ EGS++NQ+S            
Sbjct: 240 I-NYVHHDGFMKLPSLESPNSISSQNCYQ----PMITDNEGSITNQMSYP---------- 284

Query: 296 TESSSGLTSWAALDRLVASQLNGQTETSRQLACFNEPTMAPYCNPTDDDHQHDFQLPPLR 355
                GL +WA LDRL A QLNGQTETSRQL C  +PT+  YC P+ D H HD +LP LR
Sbjct: 285 --LDPGLDNWATLDRLFAYQLNGQTETSRQLPCI-DPTIT-YCTPSTDLH-HDLRLPTLR 339

Query: 356 SSSILSSNSSYHGSEDYNNEIDIWNYTRSSSSSDPLCHASN 396
           SS  L SN SYHG++DYNNEID+WN+T + SS D LC  SN
Sbjct: 340 SSFPLPSNRSYHGTQDYNNEIDLWNFT-TRSSPDTLCQLSN 379

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|327397100|dbj|BAK14367.1| transcription factor [Populus trichocarpa]

 Score =  505 bits (1301), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 266/401 (66%), Positives = 306/401 (76%), Gaps = 28/401 (6%)

Query: 1   MPESMSISVNGQSQVPPGFRFHPTEEELLHYYLRKKVSSEKIDLDVIRDVDLNKLEPWDI 60
           M E+MSISVNGQSQVPPGFRFHPTEEELL YYLRKKVS EKIDL+VIRDVDLNKLEPWDI
Sbjct: 1   MTENMSISVNGQSQVPPGFRFHPTEEELLDYYLRKKVSYEKIDLEVIRDVDLNKLEPWDI 60

Query: 61  QEKCKIGSTPQSDWYFFSHKDKKYPTGTRTNRATAAGFWKATGRDKVIHSNCRRIGMRKT 120
           QE+CKIG+ PQ+DWYFFSHKDKKYP GTRTNRATAAGFWKATGRDKVI+   +R+GMRKT
Sbjct: 61  QERCKIGTAPQNDWYFFSHKDKKYPAGTRTNRATAAGFWKATGRDKVIYGTGKRVGMRKT 120

Query: 121 LVFYKGRAPHGQKSDWIMHEYRLDDNPNEITNVSNVMGDATQEESWVVCRIFKKKDHHKT 180
           LVFYKGRAPHGQKSDWIMHEYRLDDNP+E TNVSNVMG+A QE+ WVVCRIFKKK+ +KT
Sbjct: 121 LVFYKGRAPHGQKSDWIMHEYRLDDNPSE-TNVSNVMGEAAQEDGWVVCRIFKKKNLNKT 179

Query: 181 LGSPTSSSI----NGNRMFNSCNEGSLEQILQHMGGTCKEESDEPNNNLRLYRAILGTGT 236
           L    SSS       N+  +SCNEGSL+Q+L +MG TCKEE +E +N+ R Y   + T  
Sbjct: 180 LDRAMSSSPITADTRNQTLSSCNEGSLDQMLHYMGSTCKEE-NEADNSAR-YLWPIDTAI 237

Query: 237 GGFDHNDPFLKLPSLRSPNSSGSQNNYHHYPMPMVTEIEGSVSNQVSSSNLNNSVYHTET 296
               H++ F++LPSL SPNS+ S N Y      M+TE EGS++NQVS        Y  + 
Sbjct: 238 NHVHHDNRFMELPSLESPNSTSSLNFYQS----MITENEGSITNQVS--------YPLD- 284

Query: 297 ESSSGLTSWAALDRLVASQLNGQTETSRQLACF-NEPTMAPYCNPTDDDHQHDFQLPPLR 355
              SGL +W ALD LVASQ+NGQ ETSRQ ACF N+PTM  YC PT  D  HD Q P LR
Sbjct: 285 ---SGLNNWVALDSLVASQINGQAETSRQSACFPNDPTMT-YCTPT--DLHHDLQFPTLR 338

Query: 356 SSSILSSNSSYHGSEDYNNEIDIWNYTRSSSSSDPLCHASN 396
           SS    SN SYH ++DYN+EID+WN++ S SSSDP  H  N
Sbjct: 339 SSFSFPSNRSYHETQDYNSEIDLWNFS-SRSSSDPQWHLPN 378

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|312618424|gb|ADR00332.1| wood-associated NAC domain transcription factor 2A [Populus trichocarpa] gi|327397098|dbj|BAK14366.1| transcription factor [Populus trichocarpa]

 Score =  503 bits (1295), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 265/397 (66%), Positives = 305/397 (76%), Gaps = 27/397 (6%)

Query: 5   MSISVNGQSQVPPGFRFHPTEEELLHYYLRKKVSSEKIDLDVIRDVDLNKLEPWDIQEKC 64
           MSISVNGQSQVPPGFRFHPTEEELLHYYLRKKVS EKIDLDVIRDVDLNKLEPWDIQE+C
Sbjct: 1   MSISVNGQSQVPPGFRFHPTEEELLHYYLRKKVSYEKIDLDVIRDVDLNKLEPWDIQERC 60

Query: 65  KIGSTPQSDWYFFSHKDKKYPTGTRTNRATAAGFWKATGRDKVIHSNCRRIGMRKTLVFY 124
           KIG+TPQ+DWYFFSHKDKKYPTGTRTNRATAAGFWKATGRDKVI+S  +RIGMRKTLVFY
Sbjct: 61  KIGTTPQNDWYFFSHKDKKYPTGTRTNRATAAGFWKATGRDKVIYSTGKRIGMRKTLVFY 120

Query: 125 KGRAPHGQKSDWIMHEYRLDDNPNEITNVSNVM-GDATQEESWVVCRIFKKKDHHKTLGS 183
           KGRAPHGQKSDWIMHEYRLDD+ ++ TNVSNVM  +A QEE WVVCRIFKKK+ +KTL  
Sbjct: 121 KGRAPHGQKSDWIMHEYRLDDSTSD-TNVSNVMEEEAAQEEGWVVCRIFKKKNLNKTLDK 179

Query: 184 PTSSS-ING---NRMFNSCNEGSLEQILQHMGGTCKEESDEPNNNLRLYRAILGTGTGGF 239
           P SSS I+    N+M +SC+EG+++Q   +MG TCKEE+   N+    Y   + T    +
Sbjct: 180 PFSSSPISADTRNQMLSSCDEGTIDQTFHYMGRTCKEENVADNSATARYLRPVDTAI-NY 238

Query: 240 DHNDPFLKLPSLRSPNSSGSQNNYHHYPMPMVTEIEGSVSNQVSSSNLNNSVYHTETESS 299
            H+D F+KLPSL SPNS  SQN Y     PM+T+ EGS++NQ+S                
Sbjct: 239 VHHDGFMKLPSLESPNSISSQNCYQ----PMITDNEGSITNQMSYP------------LD 282

Query: 300 SGLTSWAALDRLVASQLNGQTETSRQLACFNEPTMAPYCNPTDDDHQHDFQLPPLRSSSI 359
            GL +WA LDRL A QLNGQTETSRQL C  +PT+  YC P+ D H HD +LP LRSS  
Sbjct: 283 PGLDNWATLDRLFAYQLNGQTETSRQLPCI-DPTIT-YCTPSTDLH-HDLRLPTLRSSFP 339

Query: 360 LSSNSSYHGSEDYNNEIDIWNYTRSSSSSDPLCHASN 396
           L SN SYHG++DYNNEID+WN+T + SS D LC  SN
Sbjct: 340 LPSNRSYHGTQDYNNEIDLWNFT-TRSSPDTLCQLSN 375

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225453610|ref|XP_002267383.1| PREDICTED: NAC domain-containing protein 43-like [Vitis vinifera]

 Score =  500 bits (1288), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 265/404 (65%), Positives = 311/404 (76%), Gaps = 25/404 (6%)

Query: 1   MPESMSISVNGQSQVPPGFRFHPTEEELLHYYLRKKVSSEKIDLDVIRDVDLNKLEPWDI 60
           MPESMSISVNGQSQVPPGFRFHPTEEELL+YYLRKKV  EKIDLDVIRDVDLNKLEPWDI
Sbjct: 1   MPESMSISVNGQSQVPPGFRFHPTEEELLNYYLRKKVLYEKIDLDVIRDVDLNKLEPWDI 60

Query: 61  QEKCKIGSTPQSDWYFFSHKDKKYPTGTRTNRATAAGFWKATGRDKVIHSNCRRIGMRKT 120
           QEKC+IGSTPQ+DWYFFSHKDKKYPTGTRTNRATAAGFWKATGRDKVI+S+ +RIGMRKT
Sbjct: 61  QEKCRIGSTPQNDWYFFSHKDKKYPTGTRTNRATAAGFWKATGRDKVIYSSFKRIGMRKT 120

Query: 121 LVFYKGRAPHGQKSDWIMHEYRLDDNPNEITNVSNVMGDATQEESWVVCRIFKKKDHHKT 180
           LVFYKGRAPHGQKSDWIMHEYRLDDN N+ T VSN + +A QEE WVVCRIFKKK+HHKT
Sbjct: 121 LVFYKGRAPHGQKSDWIMHEYRLDDNTND-TQVSNAVAEA-QEEGWVVCRIFKKKNHHKT 178

Query: 181 LGSPTS------SSINGNRMFNSCNEGSLEQILQHMGGTCKEESDEPNNNLRLYRAILGT 234
           + S +       ++    ++ NS +EG+LEQI QHMG TCKE+++E NN+ R  R+I   
Sbjct: 179 VESSSPMSSSSITAETRTQLLNSSDEGALEQIFQHMGRTCKEDNNEANNSRRFLRSIDTV 238

Query: 235 GTGGFDHNDPFLKLPSLRSPNSSGSQNNYHHYPMPMVTEIEGSVSNQVSSSNLNNSVYHT 294
              G   +D F+KLP+L SPNS+ SQN Y    + M+ E E +           + VYH 
Sbjct: 239 INNGSTLHDRFMKLPTLESPNSTSSQNCYQPIHVQMIPENEAAPITP-------HPVYHL 291

Query: 295 ETESSSGLT-SWAALDRLVASQLNGQTETSRQLACFNEPTMAPYCNPTDDDHQHDFQLPP 353
           +T    GL   WAALDRLVAS LNGQT+TS+QLACFN+P+M P+ +PTD +  HD QL  
Sbjct: 292 DT----GLNDDWAALDRLVASHLNGQTDTSKQLACFNDPSM-PFSSPTDHN-DHDSQL-- 343

Query: 354 LRSSSILSSNSSYHGSEDYNNEIDIWNYTRSS-SSSDPLCHASN 396
           L+  S  S+  SYH ++DYN EID+W++TRS   SSDPLCH SN
Sbjct: 344 LQPRSSSSTTRSYHPTQDYNTEIDLWSFTRSCLQSSDPLCHISN 387

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224068147|ref|XP_002302672.1| NAC domain protein, IPR003441 [Populus trichocarpa] gi|222844398|gb|EEE81945.1| NAC domain protein, IPR003441 [Populus trichocarpa] gi|312618426|gb|ADR00333.1| wood-associated NAC domain transcription factor 2B [Populus trichocarpa]

 Score =  499 bits (1284), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 262/401 (65%), Positives = 302/401 (75%), Gaps = 38/401 (9%)

Query: 1   MPESMSISVNGQSQVPPGFRFHPTEEELLHYYLRKKVSSEKIDLDVIRDVDLNKLEPWDI 60
           M E+MSISVNGQSQVPPGFRFHPTEEELL YYLRKKVS EKIDL+VIRDVDLNKLEPWDI
Sbjct: 1   MTENMSISVNGQSQVPPGFRFHPTEEELLDYYLRKKVSYEKIDLEVIRDVDLNKLEPWDI 60

Query: 61  QEKCKIGSTPQSDWYFFSHKDKKYPTGTRTNRATAAGFWKATGRDKVIHSNCRRIGMRKT 120
           QE+CKIG+ PQ+DWYFFSHKDKKYP GTRTNRATAAGFWKATGRDKVI+   +R+GMRKT
Sbjct: 61  QERCKIGTAPQNDWYFFSHKDKKYPAGTRTNRATAAGFWKATGRDKVIYGTGKRVGMRKT 120

Query: 121 LVFYKGRAPHGQKSDWIMHEYRLDDNPNEITNVSNVMGDATQEESWVVCRIFKKKDHHKT 180
           LVFYKGRAPHGQKSDWIMHEYRLDDNP+E TNVSNVMG+A QE+ WVVCRIFKKK+ +KT
Sbjct: 121 LVFYKGRAPHGQKSDWIMHEYRLDDNPSE-TNVSNVMGEAAQEDGWVVCRIFKKKNLNKT 179

Query: 181 LGSPTSSSI----NGNRMFNSCNEGSLEQILQHMGGTCKEESDEPNNNLRLYRAILGTGT 236
           L    SSS       N+  +SCNEGSL+Q+L +MG TCKEE++  N    ++        
Sbjct: 180 LDRAMSSSPITADTRNQTLSSCNEGSLDQMLHYMGSTCKEENEADNTINHVH-------- 231

Query: 237 GGFDHNDPFLKLPSLRSPNSSGSQNNYHHYPMPMVTEIEGSVSNQVSSSNLNNSVYHTET 296
               H++ F++LPSL SPNS+ S N Y      M+TE EGS++NQVS        Y  + 
Sbjct: 232 ----HDNRFMELPSLESPNSTSSLNFYQ----SMITENEGSITNQVS--------YPLD- 274

Query: 297 ESSSGLTSWAALDRLVASQLNGQTETSRQLACF-NEPTMAPYCNPTDDDHQHDFQLPPLR 355
              SGL +W ALD LVASQ+NGQ ETSRQ ACF N+PTM  YC PT  D  HD Q P LR
Sbjct: 275 ---SGLNNWVALDSLVASQINGQAETSRQSACFPNDPTMT-YCTPT--DLHHDLQFPTLR 328

Query: 356 SSSILSSNSSYHGSEDYNNEIDIWNYTRSSSSSDPLCHASN 396
           SS    SN SYH ++DYN+EID+WN++ S SSSDP  H  N
Sbjct: 329 SSFSFPSNRSYHETQDYNSEIDLWNFS-SRSSSDPQWHLPN 368

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255578226|ref|XP_002529981.1| NAC domain-containing protein, putative [Ricinus communis] gi|223530543|gb|EEF32424.1| NAC domain-containing protein, putative [Ricinus communis]

 Score =  496 bits (1277), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 265/357 (74%), Positives = 294/357 (82%), Gaps = 18/357 (5%)

Query: 1   MPESMSISVNGQSQVPPGFRFHPTEEELLHYYLRKKVSSEKIDLDVIRDVDLNKLEPWDI 60
           MPE+MSISVNGQSQVPPGFRFHPTEEELL+YYL+KKVS EKIDLDVIRDVDLNKLEPWDI
Sbjct: 1   MPENMSISVNGQSQVPPGFRFHPTEEELLYYYLKKKVSYEKIDLDVIRDVDLNKLEPWDI 60

Query: 61  QEKCKIGSTPQSDWYFFSHKDKKYPTGTRTNRATAAGFWKATGRDKVIHSNCRRIGMRKT 120
           QEKCKIG+TPQ+DWYFFSHKDKKYPTGTRTNRATAAGFWKATGRDKVI+SN RRIGMRKT
Sbjct: 61  QEKCKIGTTPQNDWYFFSHKDKKYPTGTRTNRATAAGFWKATGRDKVIYSNGRRIGMRKT 120

Query: 121 LVFYKGRAPHGQKSDWIMHEYRLDDNPNEITNVSNVMGDATQEESWVVCRIFKKKDHHKT 180
           LVFYKGRAPHGQKSDWIMHEYRLDDN  + TNVSNVMG+A QEE WVVCRIFKKK+HHKT
Sbjct: 121 LVFYKGRAPHGQKSDWIMHEYRLDDNIVD-TNVSNVMGEAAQEEGWVVCRIFKKKNHHKT 179

Query: 181 LGSPTSSSI----NGNRMFNSCNEGSLEQIL-QHMGGTCKEESDEPNNNLRLYRAILGTG 235
           L SP SSS        ++FNSCNEG+L QIL ++MG TCKEE +E NN +R  R I  T 
Sbjct: 180 LDSPLSSSSFFTEARTQIFNSCNEGALGQILEEYMGRTCKEE-NEANNCVRFLRPIDTTI 238

Query: 236 TGGFDHNDPFLKLPSLRSPNSSGSQNNYHHYPMPMVTEIEGSVSNQVSSSNLNN-SVYHT 294
             G  ++D F+KLPSL SPNSS SQN Y     PM+   E SVSNQ++S + NN S+Y  
Sbjct: 239 NSGSSYHDKFMKLPSLESPNSSSSQNAYP----PMINNNESSVSNQLNSMDANNSSLYPL 294

Query: 295 ETESSSGLTSWAALDRLVASQLNGQTETSRQLACFNEPTMAPYCNPTDDDHQHDFQL 351
           E    SG+T+WAALDRLVASQLNGQTE SRQLACF++PTM  YCNP +  H HD QL
Sbjct: 295 E----SGITNWAALDRLVASQLNGQTEASRQLACFSDPTMV-YCNPINQPH-HDLQL 345

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356559776|ref|XP_003548173.1| PREDICTED: NAC domain-containing protein 43-like [Glycine max]

 Score =  483 bits (1244), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 278/449 (61%), Positives = 319/449 (71%), Gaps = 56/449 (12%)

Query: 1   MPESMSISVNGQSQVPPGFRFHPTEEELLHYYLRKKVSSEKIDLDVIRDVDLNKLEPWDI 60
           MPE+MSISVNGQSQVPPGFRFHPTEEELL YYLRKKVS EKIDLDVIRDVDLNKLEPWDI
Sbjct: 1   MPENMSISVNGQSQVPPGFRFHPTEEELLQYYLRKKVSYEKIDLDVIRDVDLNKLEPWDI 60

Query: 61  QEKCKIGSTPQSDWYFFSHKDKKYPTGTRTNRATAAGFWKATGRDKVIHSNCRRIGMRKT 120
           QEKCKIG+TPQ+DWYFFSHKDKKYPTGTRTNRATAAGFWKATGRDKVI+SN +RIGMRKT
Sbjct: 61  QEKCKIGTTPQNDWYFFSHKDKKYPTGTRTNRATAAGFWKATGRDKVIYSNGKRIGMRKT 120

Query: 121 LVFYKGRAPHGQKSDWIMHEYRLDD-NPNEITNVSNVMGDATQEESWVVCRIFKKKDHHK 179
           LVFYKGRAPHGQKSDWIMHEYRLDD N ++I  VSNVMGDA QEE WVVCRIFKKK+H K
Sbjct: 121 LVFYKGRAPHGQKSDWIMHEYRLDDNNTSDINIVSNVMGDAAQEEGWVVCRIFKKKNHLK 180

Query: 180 TLGSPTSSSINGNR--MFNSCNEGSLEQILQHMGGTCKEESD-EPNNNLRLYRAILGTGT 236
           TL SP +S   G R  MF+SC+EG+LEQILQ MG  CKEES  E N N     A+     
Sbjct: 181 TLDSPLASG-EGRRSHMFDSCDEGALEQILQQMGRGCKEESSYEGNYNSYGRFAMGLNNG 239

Query: 237 GGFDHNDPFLKLPSLRSPNSSGSQ-----------------------NNYHH-YPMPMVT 272
           GG  +ND F+KLPSL SP S+  +                       N YH   P+ M T
Sbjct: 240 GGGGYNDRFMKLPSLESPKSASMENHHNTNNNCNNNMKSNNNNNNNNNGYHPIIPVEMGT 299

Query: 273 EIEGS-VSNQVSSSN------LNNSVYHTETES-SSGLTSWAALDRLVASQLNGQTETSR 324
           + EG+  ++QVS  +       +N V+  E  S   GLT+WAALDRLVASQLNGQT+ SR
Sbjct: 300 DNEGTFTTHQVSGGDPNNNNNNSNIVHPLEVGSGGGGLTNWAALDRLVASQLNGQTDASR 359

Query: 325 QLAC-FNEPTMAPYCNPTDDDHQHDF--QLPPLRSSSILSSNSSYHG-------SEDYNN 374
           QL C FN+PTM  YC   D    HD   Q+P LRSSS  ++             ++D+ +
Sbjct: 360 QLGCAFNDPTM--YCTSVD---HHDLHHQIPTLRSSSTSANTRPSPAPAFINPPTQDFTS 414

Query: 375 EIDIWNYTRSSS----SSDPLCHASNNRL 399
           EID+WN++RS+S    SS+PLCH SN  +
Sbjct: 415 EIDLWNFSRSTSSLLASSEPLCHVSNTSV 443

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356522480|ref|XP_003529874.1| PREDICTED: NAC domain-containing protein 43-like [Glycine max]

 Score =  464 bits (1193), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 259/405 (63%), Positives = 294/405 (72%), Gaps = 46/405 (11%)

Query: 1   MPESMSISVNGQSQVPPGFRFHPTEEELLHYYLRKKVSSEKIDLDVIRDVDLNKLEPWDI 60
           MPE+MSISVNGQSQVPPGFRFHPTEEELL YYLRKKVS EKIDLDVIRDVDLNKLEPWDI
Sbjct: 1   MPENMSISVNGQSQVPPGFRFHPTEEELLQYYLRKKVSYEKIDLDVIRDVDLNKLEPWDI 60

Query: 61  QEKCKIGSTPQSDWYFFSHKDKKYPTGTRTNRATAAGFWKATGRDKVIHSNCRRIGMRKT 120
           QEKCKIG+TPQ+DWYFFSHKDKKYPTGTRTNRATAAGFWKATGRDKVI+SN +RIGMRKT
Sbjct: 61  QEKCKIGTTPQNDWYFFSHKDKKYPTGTRTNRATAAGFWKATGRDKVIYSNGKRIGMRKT 120

Query: 121 LVFYKGRAPHGQKSDWIMHEYRLDDNPNEITN-VSNVMGDATQEESWVVCRIFKKKDHHK 179
           LVFYKGRAPHGQKSDWIMHEYRLDDN    TN VSNVMGDA QEE WVVCRIFKKK+H K
Sbjct: 121 LVFYKGRAPHGQKSDWIMHEYRLDDNNTADTNIVSNVMGDAAQEEGWVVCRIFKKKNHLK 180

Query: 180 TLGSPTSSSIN-GNRMFNSCNEGSLEQILQHMGGTCKEESDEPNNNL---RLYRAILGTG 235
           TL SP +S  +  + +F+SC+EG+LEQIL+ MG +CKEES    N     R  R    TG
Sbjct: 181 TLDSPLASGEDRRSHLFDSCDEGALEQILEQMGRSCKEESSYEGNYRNYGRFTRPYETTG 240

Query: 236 -TGGFDHNDPFLKLPSLRSPNSSGSQNN---------------------------YH-HY 266
              G  +ND F+KLPSL SP S+  +++                           YH   
Sbjct: 241 LNNGGGYNDRFMKLPSLESPKSASMESHHNTNNNNNMNSNNNNNGDNNENNNNNGYHPMI 300

Query: 267 PMPMVTEIEGS-VSNQVSSSN----LNNSVYHTETES-SSGLTSWAALDRLVASQLNGQT 320
           P+ M T+ EGS  ++QVS  +     NN V+  E  S   GLT+WAALDRLVASQLNGQT
Sbjct: 301 PVEMGTDNEGSFTTHQVSGGDPNNNNNNMVHPLEVGSGGGGLTNWAALDRLVASQLNGQT 360

Query: 321 ETSRQLAC-FNEPTMAPYCNPTDDDHQHDFQLPPLRSSSILSSNS 364
           + SRQLAC FN+PTM  YC     DH    Q+P LRSSS  ++++
Sbjct: 361 DASRQLACAFNDPTM--YCT---SDHHDLHQIPTLRSSSTSAAHT 400

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296089002|emb|CBI38705.3| unnamed protein product [Vitis vinifera]

 Score =  430 bits (1105), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 236/384 (61%), Positives = 274/384 (71%), Gaps = 44/384 (11%)

Query: 5   MSISVNGQSQVPPGFRFHPTEEELLHYYLRKKVSSEKIDLDVIRDVDLNKLEPWDIQEKC 64
           MSISVNGQSQVPPGFRFHPTEEELL+YYLRKKV  EKIDLDVIRDVDLNKLEPWDIQEKC
Sbjct: 1   MSISVNGQSQVPPGFRFHPTEEELLNYYLRKKVLYEKIDLDVIRDVDLNKLEPWDIQEKC 60

Query: 65  KIGSTPQSDWYFFSHKDKKYPTGTRTNRATAAGFWKATGRDKVIHSNCRRIGMRKTLVFY 124
           +IGSTPQ+DWYFFSHKDKKYPTGTRTNRATAAGFWKATGRDKVI+S+ +RIGMRKTLVFY
Sbjct: 61  RIGSTPQNDWYFFSHKDKKYPTGTRTNRATAAGFWKATGRDKVIYSSFKRIGMRKTLVFY 120

Query: 125 KGRAPHGQKSDWIMHEYRLDDNPNEITNVSNVMGDATQEESWVVCRIFKKKDHHKTLGSP 184
           KGRAPHGQKSDWIMHEYRLDDN N+ T VSN + +A QEE WVVCRIFKKK+HHKT+   
Sbjct: 121 KGRAPHGQKSDWIMHEYRLDDNTND-TQVSNAVAEA-QEEGWVVCRIFKKKNHHKTV--- 175

Query: 185 TSSSINGNRMFNSCNEGSLEQILQHMGGTCKEESDEPNNNLRLYRAILGTGTGGFDHNDP 244
                          E S       +    + +        R  R+I      G   +D 
Sbjct: 176 ---------------ESSSPMSSSSITAETRTQ--------RFLRSIDTVINNGSTLHDR 212

Query: 245 FLKLPSLRSPNSSGSQNNYHHYPMPMVTEIEGSVSNQVSSSNLNNSVYHTETESSSGLT- 303
           F+KLP+L SPNS+ SQN Y    + M+ E E +           + VYH +T    GL  
Sbjct: 213 FMKLPTLESPNSTSSQNCYQPIHVQMIPENEAAPITP-------HPVYHLDT----GLND 261

Query: 304 SWAALDRLVASQLNGQTETSRQLACFNEPTMAPYCNPTDDDHQHDFQLPPLRSSSILSSN 363
            WAALDRLVAS LNGQT+TS+QLACFN+P+M P+ +PTD +  HD QL  L+  S  S+ 
Sbjct: 262 DWAALDRLVASHLNGQTDTSKQLACFNDPSM-PFSSPTDHN-DHDSQL--LQPRSSSSTT 317

Query: 364 SSYHGSEDYNNEIDIWNYTRSSSS 387
            SYH ++DYN EID+W++TRSS S
Sbjct: 318 RSYHPTQDYNTEIDLWSFTRSSPS 341

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225426558|ref|XP_002279545.1| PREDICTED: NAC domain-containing protein 43-like [Vitis vinifera]

 Score =  420 bits (1080), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 241/425 (56%), Positives = 289/425 (68%), Gaps = 51/425 (12%)

Query: 1   MPESMSISVNGQSQVPPGFRFHPTEEELLHYYLRKKVSSEKIDLDVIRDVDLNKLEPWDI 60
           M E M++SVNGQSQVPPGFRFHPTEEELLHYYLRKKV+ EKIDLDVIRDVDLNKLEPWDI
Sbjct: 1   MSEDMNLSVNGQSQVPPGFRFHPTEEELLHYYLRKKVAYEKIDLDVIRDVDLNKLEPWDI 60

Query: 61  QEKCKIGSTPQSDWYFFSHKDKKYPTGTRTNRATAAGFWKATGRDKVIHSNCRRIGMRKT 120
           QEKCKIGSTPQ+DWYFFSHKDKKYPTGTRTNRATAAGFWKATGRDKVI+S+ RRIGMRKT
Sbjct: 61  QEKCKIGSTPQNDWYFFSHKDKKYPTGTRTNRATAAGFWKATGRDKVIYSSFRRIGMRKT 120

Query: 121 LVFYKGRAPHGQKSDWIMHEYRLDDN-PNEITNVSNVMGDATQEESWVVCRIFKKKDHHK 179
           LVFYKGRAPHGQKSDWIMHEYRL++N P   T  SN +G++  E+ WVVCR+F+KK++ K
Sbjct: 121 LVFYKGRAPHGQKSDWIMHEYRLEENTPVHDTMASNSLGESMPEDGWVVCRVFRKKNYQK 180

Query: 180 TLGSPTSSSINGN---RMFNSCNEGSLEQILQHMGGTCKEESD--------EPNNNLRLY 228
           TL SP S+S + +   +M NS N+G L+QIL +MG TCK+E++        + NN +R  
Sbjct: 181 TLESPKSTSNSMDSRTQMLNSSNDGVLDQILSYMGRTCKQENEAISNVNFSDSNNTMRF- 239

Query: 229 RAILGTGTGGFDH--NDPFLKLPSLRSPNSSGSQNNYHHYPM-------------PMVTE 273
              L     G      + F+ LP L SP      NN  H+                M+  
Sbjct: 240 ---LNQNNTGISEGLQERFMHLPRLESPTLPSLPNNSSHFDQERCFNIACLQSIDEMLRG 296

Query: 274 IEGSVSNQVSSSNLNNSVYHTETESSSGLTSWAALDRLVASQLNGQTETSRQLACFN-EP 332
            E S  NQ   S  N +  H   +  +GL  W A DRLVASQLNGQ +T +QL+CF+ +P
Sbjct: 297 SEPSSENQ--GSGCNTTPVH---DPKAGLNDWVAFDRLVASQLNGQVDT-KQLSCFSTDP 350

Query: 333 TMAPYCNPTDDDHQHDFQLPPLRSSSILSSNSSYHGSEDYNNEIDIWNYTR--SSSSSDP 390
            M  +C   D    HD +L  LRSS            ++YN+E+D+WN+TR  SSSSSDP
Sbjct: 351 NMG-FCLSPD----HDVELSHLRSS------RPNPNPQNYNSEMDLWNFTRSSSSSSSDP 399

Query: 391 LCHAS 395
           L H S
Sbjct: 400 LGHLS 404

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	399
TAIR|locus:2044360	365	NST1 "NAC SECONDARY WALL THICK	0.604	0.660	0.634	6e-97
TAIR|locus:2079562	334	NAC066 "NAC domain protein 66"	0.518	0.619	0.633	7e-85
TAIR|locus:2035604	358	NAC012 "NAC domain containing	0.598	0.667	0.562	4e-81
TAIR|locus:2019833	371	SMB "SOMBRERO" [Arabidopsis th	0.766	0.824	0.422	1.8e-62
TAIR|locus:2122804	341	NAC070 "NAC domain containing	0.746	0.873	0.447	1.6e-61
TAIR|locus:2026232	394	ANAC026 "Arabidopsis NAC domai	0.393	0.398	0.634	6.9e-61
TAIR|locus:2122219	377	NAC076 "NAC domain containing	0.746	0.790	0.409	1.9e-60
TAIR|locus:2196641	305	NAC015 "NAC domain containing	0.433	0.567	0.598	3.1e-60
TAIR|locus:2202028	395	NAC007 "NAC 007" [Arabidopsis	0.393	0.397	0.628	2.6e-59
TAIR|locus:2060979	365	VND1 "vascular related NAC-dom	0.719	0.786	0.416	9.3e-59

TAIR|locus:2044360 NST1 "NAC SECONDARY WALL THICKENING PROMOTING FACTOR1" [Arabidopsis thaliana (taxid:3702)]

 Score = 843 (301.8 bits), Expect = 6.0e-97, Sum P(2) = 6.0e-97
 Identities = 175/276 (63%), Positives = 202/276 (73%)

Query:     1 MPESMSISVNGQSQVPPGFRFHPTEEELLHYYLRKKVSSEKIDLDVIRDVDLNKLEPWDI 60
             M +SMSISVNGQSQVPPGFRFHPTEEELL YYLRKKV+S +IDLDVIRDVDLNKLEPWDI
Sbjct:     2 MSKSMSISVNGQSQVPPGFRFHPTEEELLQYYLRKKVNSIEIDLDVIRDVDLNKLEPWDI 61

Query:    61 QEKCKIGSTPQSDWYFFSHKDKKYPXXXXXXXXXXXXFWKATGRDKVIHSNCRRIGMRKT 120
             QE CKIG+TPQ+DWYFFSHKDKKYP            FWKATGRDK+I+SN RRIGMRKT
Sbjct:    62 QEMCKIGTTPQNDWYFFSHKDKKYPTGTRTNRATAAGFWKATGRDKIIYSNGRRIGMRKT 121

Query:   121 LVFYKGRAPHGQKSDWIMHEYRLDDN---PNEIT--NVSNVMGDATQEESWVVCRIFKKK 175
             LVFYKGRAPHGQKSDWIMHEYRLDDN   P ++T   V +++G+A+Q+E WVVCRIFKKK
Sbjct:   122 LVFYKGRAPHGQKSDWIMHEYRLDDNIISPEDVTVHEVVSIIGEASQDEGWVVCRIFKKK 181

Query:   176 DHHKTLGSPTS-SSINGN----RMFNS--CNEGSLEQILQHMGGTCKEESDEPNNNLRLY 228
             + HKTL SP   +S++G     +  +S   NE +L+Q L+ MG +CKEE      NL   
Sbjct:   182 NLHKTLNSPVGGASLSGGGDTPKTTSSQIFNEDTLDQFLELMGRSCKEEL-----NL--- 233

Query:   229 RAILGTGTGGFDHNDPFLKLPSLRSPNSSGSQNNYH 264
                           DPF+KLP+L SPNS    NN H
Sbjct:   234 --------------DPFMKLPNLESPNSQAI-NNCH 254

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0009793 "embryo development ending in seed dormancy" evidence=NAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009834 "secondary cell wall biogenesis" evidence=IGI;IMP

GO:0009901 "anther dehiscence" evidence=IGI

GO:0009809 "lignin biosynthetic process" evidence=IGI

GO:0010047 "fruit dehiscence" evidence=IMP

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IDA

TAIR|locus:2079562 NAC066 "NAC domain protein 66" [Arabidopsis thaliana (taxid:3702)]

 Score = 703 (252.5 bits), Expect = 7.0e-85, Sum P(4) = 7.0e-85
 Identities = 140/221 (63%), Positives = 164/221 (74%)

Query:     5 MSISVNGQSQVPPGFRFHPTEEELLHYYLRKKVSSEKIDLDVIRDVDLNKLEPWDIQEKC 64
             M+ISVNGQSQVPPGFRFHPTEEELL YYLRKK+S+ KIDLDVI D+DLNKLEPWDIQE C
Sbjct:     1 MNISVNGQSQVPPGFRFHPTEEELLKYYLRKKISNIKIDLDVIPDIDLNKLEPWDIQEMC 60

Query:    65 KIGSTPQSDWYFFSHKDKKYPXXXXXXXXXXXXFWKATGRDKVIHSNCRRIGMRKTLVFY 124
             KIG+TPQ+DWYF+SHKDKKYP            FWKATGRDK I++N  RIGMRKTLVFY
Sbjct:    61 KIGTTPQNDWYFYSHKDKKYPTGTRTNRATTVGFWKATGRDKTIYTNGDRIGMRKTLVFY 120

Query:   125 KGRAPHGQKSDWIMHEYRLDDNP------NEITNVS--NVMGDATQEESWVVCRIFKKKD 176
             KGRAPHGQKSDWIMHEYRLD++       +   NV   +V+G    +E WVVCR+FKK +
Sbjct:   121 KGRAPHGQKSDWIMHEYRLDESVLISSCGDHDVNVETCDVIGS---DEGWVVCRVFKKNN 177

Query:   177 HHKTLGSPTSSSINGNRMFNSCNEGSLEQILQHMGGTCKEE 217
               K +    SSS   +    S NE ++EQ+L+ MG +CK E
Sbjct:   178 LCKNM---ISSSPASSVKTPSFNEETIEQLLEVMGQSCKGE 215

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009834 "secondary cell wall biogenesis" evidence=IMP

GO:0009901 "anther dehiscence" evidence=IGI

GO:0016020 "membrane" evidence=IDA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IDA

TAIR|locus:2035604 NAC012 "NAC domain containing protein 12" [Arabidopsis thaliana (taxid:3702)]

 Score = 721 (258.9 bits), Expect = 4.0e-81, Sum P(3) = 4.0e-81
 Identities = 149/265 (56%), Positives = 180/265 (67%)

Query:     5 MSISVNGQSQVPPGFRFHPTEEELLHYYLRKKVSSEKIDLDVIRDVDLNKLEPWDIQEKC 64
             +++S+NGQS+VPPGFRFHPTEEELLHYYLRKKV+S+KIDLDVIR+VDLNKLEPWDIQE+C
Sbjct:     6 VNLSINGQSKVPPGFRFHPTEEELLHYYLRKKVNSQKIDLDVIREVDLNKLEPWDIQEEC 65

Query:    65 KIGSTPQSDWYFFSHKDKKYPXXXXXXXXXXXXFWKATGRDKVIHSNCRRIGMRKTLVFY 124
             +IGSTPQ+DWYFFSHKDKKYP            FWKATGRDK+I S  RRIG+RKTLVFY
Sbjct:    66 RIGSTPQNDWYFFSHKDKKYPTGTRTNRATVAGFWKATGRDKIICSCVRRIGLRKTLVFY 125

Query:   125 KGRAPHGQKSDWIMHEYRLDDNP--NEITNVSNVMGDATQEESWVVCRIFKKKDHHKTLG 182
             KGRAPHGQKSDWIMHEYRLDD P  N   +V      +  EE WVVCR+F+KK++ K   
Sbjct:   126 KGRAPHGQKSDWIMHEYRLDDTPMSNGYADVVTEDPMSYNEEGWVVCRVFRKKNYQKIDD 185

Query:   183 SP--TSSSI-------NGNRMFNSCNEGSLEQILQHMGGTCKEESDEPNNNLRLYRAILG 233
              P  T SS+        G    N+ N   L+ +L +M        D   +N+ +  +   
Sbjct:   186 CPKITLSSLPDDTEEEKGPTFHNTQNVTGLDHVLLYM--------DRTGSNICMPESQTT 237

Query:   234 TGTGGFDHNDP--FLKLPSLRSPNS 256
             T      H D   F++LPSL +P S
Sbjct:   238 T-----QHQDDVLFMQLPSLETPKS 257

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009834 "secondary cell wall biogenesis" evidence=IGI;IMP

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IDA

GO:0009809 "lignin biosynthetic process" evidence=IGI

GO:0010047 "fruit dehiscence" evidence=IMP

GO:0043565 "sequence-specific DNA binding" evidence=IDA

GO:0010413 "glucuronoxylan metabolic process" evidence=RCA

GO:0045492 "xylan biosynthetic process" evidence=RCA

TAIR|locus:2019833 SMB "SOMBRERO" [Arabidopsis thaliana (taxid:3702)]

 Score = 638 (229.6 bits), Expect = 1.8e-62, P = 1.8e-62
 Identities = 145/343 (42%), Positives = 189/343 (55%)

Query:     4 SMSISVNGQSQVPPGFRFHPTEEELLHYYLRKKVSSEKIDLDVIRDVDLNKLEPWDIQEK 63
             S +++  GQ  VPPGFRFHPTEEELL+YYL+KKVS E IDLDVIR+VDLNKLEPW+++EK
Sbjct:     6 SSTVAGGGQLSVPPGFRFHPTEEELLYYYLKKKVSYEPIDLDVIREVDLNKLEPWELKEK 65

Query:    64 CKIGSTPQSDWYFFSHKDKKYPXXXXXXXXXXXXFWKATGRDKVIHSNC-RRIGMRKTLV 122
             C+IGS PQ++WYFFSHKDKKYP            FWKATGRDK IH N  ++IG+RKTLV
Sbjct:    66 CRIGSGPQNEWYFFSHKDKKYPTGTRTNRATAAGFWKATGRDKSIHLNSSKKIGLRKTLV 125

Query:   123 FYKGRAPHGQKSDWIMHEYRLDDNPNEITNVSNVMGDATQEESWVVCRIFKKKDHHKTLG 182
             FY GRAPHGQK++WIMHEYRLDD+ NEI           QE+ WVVCR+FKKK+H +   
Sbjct:   126 FYTGRAPHGQKTEWIMHEYRLDDSENEI-----------QEDGWVVCRVFKKKNHFRGFH 174

Query:   183 SPTSSSINGNRMFNSCNEGSLEQILQHMGGTCKEES-------DEPNNNLRLYRAI---L 232
                    + +  + S N         H+       S       D  +++  + R I   L
Sbjct:   175 QEQEQDHHHHHQYISTNNDHDHH--HHIDSNSNNHSPLILHPLDHHHHHHHIGRQIHMPL 232

Query:   233 GTGTGGFDHNDPFLKLPSLRSPNSSGSQNNYHHYPMPMVTEIEGXXXXXXXXXXXXXXXY 292
                     H    + LP L SP+S+ +         P V+ I                  
Sbjct:   233 HEFANTLSHGS--MHLPQLFSPDSAAAAAAAAASAQPFVSPINTTDIECSQNLLRL---- 286

Query:   293 HTETESSSGLTSWAALDRLVAS-QLNGQTET---SRQLACFNE 331
              T   +  G   W+ LD+L+ +  +N Q +    + Q  CF +
Sbjct:   287 -TSNNNYGG--DWSFLDKLLTTGNMNQQQQQQVQNHQAKCFGD 326

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0010455 "positive regulation of cell fate commitment" evidence=IMP

GO:0048829 "root cap development" evidence=IMP

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IMP

GO:0009834 "secondary cell wall biogenesis" evidence=IMP

GO:0003002 "regionalization" evidence=IMP

TAIR|locus:2122804 NAC070 "NAC domain containing protein 70" [Arabidopsis thaliana (taxid:3702)]

 Score = 629 (226.5 bits), Expect = 1.6e-61, P = 1.6e-61
 Identities = 146/326 (44%), Positives = 183/326 (56%)

Query:     5 MSISVNGQSQVPPGFRFHPTEEELLHYYLRKKVSSEKIDLDVIRDVDLNKLEPWDIQEKC 64
             M  S NG   VPPGFRFHPT+EELLHYYL+KK+S +K +++VIR+VDLNKLEPWD+QE+C
Sbjct:     1 MGSSSNGG--VPPGFRFHPTDEELLHYYLKKKISYQKFEMEVIREVDLNKLEPWDLQERC 58

Query:    65 KIGSTPQSDWYFFSHKDKKYPXXXXXXXXXXXXFWKATGRDKVIHSNCRRIGMRKTLVFY 124
             KIGSTPQ++WYFFSHKD+KYP            FWKATGRDK I ++ ++IGMRKTLVFY
Sbjct:    59 KIGSTPQNEWYFFSHKDRKYPTGSRTNRATHAGFWKATGRDKCIRNSYKKIGMRKTLVFY 118

Query:   125 KGRAPHGQKSDWIMHEYRLDDNPNEITNVSNVMGDATQEESWVVCRIFKKKDHHKTLGSP 184
             KGRAPHGQK+DWIMHEYRL+D  +   N S        E+ WVVCR+F KK+  K +   
Sbjct:   119 KGRAPHGQKTDWIMHEYRLEDADDPQANPS--------EDGWVVCRVFMKKNLFKVVNEG 170

Query:   185 TSSSINGNRMFN--SCNEGSLEQILQHMGGTCKEESDEPNNNLRLYRAI---LGTGTGGF 239
              SSSIN     N  + N     Q    M        D P   +R + A+   L       
Sbjct:   171 -SSSINSLDQHNHDASNNNHALQARSFM------HRDSPYQLVRNHGAMTFELNKPDLAL 223

Query:   240 DHNDP-FLKLPSLRSPNSSGSQNNYHHYPMPMVTEIEGXXXXXXXXXXXXXXXYHTETES 298
                 P F K PSL    SSG   +        + + +                 H   + 
Sbjct:   224 HQYPPIFHKPPSLGFDYSSGLARDSESAASEGL-QYQQACEPGLDVGTCETVASHNHQQ- 281

Query:   299 SSGLTSWAALDRLVASQLNGQTETSR 324
               GL  WA +DRLV   + G  ++SR
Sbjct:   282 --GLGEWAMMDRLVTCHM-GNEDSSR 304

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009834 "secondary cell wall biogenesis" evidence=IMP

GO:0010628 "positive regulation of gene expression" evidence=IEP

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IMP

GO:0048829 "root cap development" evidence=IMP

TAIR|locus:2026232 ANAC026 "Arabidopsis NAC domain containing protein 26" [Arabidopsis thaliana (taxid:3702)]

 Score = 569 (205.4 bits), Expect = 6.9e-61, Sum P(2) = 6.9e-61
 Identities = 106/167 (63%), Positives = 125/167 (74%)

Query:     9 VNGQSQVPPGFRFHPTEEELLHYYLRKKVSSEKIDLDVIRDVDLNKLEPWDIQEKCKIGS 68
             +N  SQVPPGFRFHPT+EEL+ YYLRKKV+S++I++D+I+DVDL K+EP D+QE CKIG+
Sbjct:     1 MNSFSQVPPGFRFHPTDEELVDYYLRKKVASKRIEIDIIKDVDLYKIEPCDLQELCKIGN 60

Query:    69 TPQSDWYFFSHKDKKYPXXXXXXXXXXXXFWKATGRDKVIHSNCRRIGMRKTLVFYKGRA 128
               QS+WYFFSHKDKKYP            FWKATGRDK I+     IGMRKTLVFYKGRA
Sbjct:    61 EEQSEWYFFSHKDKKYPTGTRTNRATKAGFWKATGRDKAIYIRHSLIGMRKTLVFYKGRA 120

Query:   129 PHGQKSDWIMHEYRLDDNPNEITNVSNVMGDATQEESWVVCRIFKKK 175
             P+GQKSDWIMHEYRL+ + N             QEE WVVCR+FKKK
Sbjct:   121 PNGQKSDWIMHEYRLETSEN----------GTPQEEGWVVCRVFKKK 157

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;TAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

TAIR|locus:2122219 NAC076 "NAC domain containing protein 76" [Arabidopsis thaliana (taxid:3702)]

 Score = 619 (223.0 bits), Expect = 1.9e-60, P = 1.9e-60
 Identities = 133/325 (40%), Positives = 186/325 (57%)

Query:     8 SVNGQSQVPPGFRFHPTEEELLHYYLRKKVSSEKIDLDVIRDVDLNKLEPWDIQEKCKIG 67
             SV+    VPPGFRFHPT+EEL+ YYLRKKV+S+KIDLDVIRD+DL ++EPWD+QE C+IG
Sbjct:     3 SVDQSCSVPPGFRFHPTDEELVGYYLRKKVASQKIDLDVIRDIDLYRIEPWDLQESCRIG 62

Query:    68 STPQSDWYFFSHKDKKYPXXXXXXXXXXXXFWKATGRDKVIHSNCRRIGMRKTLVFYKGR 127
                +++WYFFSHKDKKYP            FWKATGRDK ++   + IGMRKTLVFYKGR
Sbjct:    63 YEERNEWYFFSHKDKKYPTGTRTNRATMAGFWKATGRDKAVYDKSKLIGMRKTLVFYKGR 122

Query:   128 APHGQKSDWIMHEYRLDDNPNEITNVSNVMGDATQEESWVVCRIFKKKDHHKTLGSPTSS 187
             AP+GQK+DWIMHEYRL+ + N             QEE WVVCR FKKK    T  +  + 
Sbjct:   123 APNGQKTDWIMHEYRLESDENA----------PPQEEGWVVCRAFKKKP--MTGQAKNTE 170

Query:   188 SINGNRMFNSCNEGSLEQILQHMGGTCKEESDEPNNNLRLYRAILGTGTG-GFDHNDPFL 246
             + + +  ++    G +  + + +    K++ +    +L   + + G+  G  F H D F+
Sbjct:   171 TWSSSYFYDELPSG-VRSVTEPLNYVSKQKQNVFAQDLMFKQELEGSDIGLNFIHCDQFI 229

Query:   247 KLPSLRSPNSSGSQNNYHHYPMPMVTEIEGXXXXXXXXXXXXXXXYHT----------ET 296
             +LP L SP+   ++       +  +T +E                ++           + 
Sbjct:   230 QLPQLESPSLPLTKRPVS---LTSITSLEKNKNIYKRHLIEEDVSFNALISSGNKDKKKK 286

Query:   297 ESSSGLTSWAALDRLVASQLNGQTE 321
             ++S   T W ALD+ VASQL  Q +
Sbjct:   287 KTSVMTTDWRALDKFVASQLMSQED 311

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;TAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009741 "response to brassinosteroid stimulus" evidence=RCA

GO:0010089 "xylem development" evidence=RCA

TAIR|locus:2196641 NAC015 "NAC domain containing protein 15" [Arabidopsis thaliana (taxid:3702)]

 Score = 617 (222.3 bits), Expect = 3.1e-60, P = 3.1e-60
 Identities = 112/187 (59%), Positives = 142/187 (75%)

Query:     8 SVNGQSQVPPGFRFHPTEEELLHYYLRKKVSSEKIDLDVIRDVDLNKLEPWDIQEKCKIG 67
             S NG   VPPGFRFHPT+EELLHYYL+KK+S EK +++VI++VDLNK+EPWD+Q++CKIG
Sbjct:     3 SSNGG--VPPGFRFHPTDEELLHYYLKKKISYEKFEMEVIKEVDLNKIEPWDLQDRCKIG 60

Query:    68 STPQSDWYFFSHKDKKYPXXXXXXXXXXXXFWKATGRDKVIHSNCRRIGMRKTLVFYKGR 127
             STPQ++WYFFSHKD+KYP            FWKATGRDK I ++ ++IGMRKTLVFYKGR
Sbjct:    61 STPQNEWYFFSHKDRKYPTGSRTNRATHSGFWKATGRDKCIRNSYKKIGMRKTLVFYKGR 120

Query:   128 APHGQKSDWIMHEYRLDDNPNEITNVSNVMGDATQEESWVVCRIFKKKDHHKTLGSPTSS 187
             APHGQK+DWIMHEYR++D             D   E+ WVVCR+FKKK+  K +G+   S
Sbjct:   121 APHGQKTDWIMHEYRIEDTE-----------DDPCEDGWVVCRVFKKKNLFK-VGNDVGS 168

Query:   188 SINGNRM 194
             +I+ NR+
Sbjct:   169 NISNNRL 175

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009834 "secondary cell wall biogenesis" evidence=IMP

GO:0010628 "positive regulation of gene expression" evidence=IEP

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IMP

GO:0048829 "root cap development" evidence=IMP

TAIR|locus:2202028 NAC007 "NAC 007" [Arabidopsis thaliana (taxid:3702)]

 Score = 571 (206.1 bits), Expect = 2.6e-59, Sum P(2) = 2.6e-59
 Identities = 105/167 (62%), Positives = 123/167 (73%)

Query:     9 VNGQSQVPPGFRFHPTEEELLHYYLRKKVSSEKIDLDVIRDVDLNKLEPWDIQEKCKIGS 68
             +N  S VPPGFRFHPT+EEL+ YYLRKKV+S++I++D I+D+DL K+EPWD+QE CKIG 
Sbjct:     1 MNSFSHVPPGFRFHPTDEELVDYYLRKKVASKRIEIDFIKDIDLYKIEPWDLQELCKIGH 60

Query:    69 TPQSDWYFFSHKDKKYPXXXXXXXXXXXXFWKATGRDKVIHSNCRRIGMRKTLVFYKGRA 128
               QSDWYFFSHKDKKYP            FWKATGRDK I+     IGMRKTLVFYKGRA
Sbjct:    61 EEQSDWYFFSHKDKKYPTGTRTNRATKAGFWKATGRDKAIYLRHSLIGMRKTLVFYKGRA 120

Query:   129 PHGQKSDWIMHEYRLDDNPNEITNVSNVMGDATQEESWVVCRIFKKK 175
             P+GQKSDWIMHEYRL+ + N             QEE WVVCR+FKK+
Sbjct:   121 PNGQKSDWIMHEYRLETDEN----------GTPQEEGWVVCRVFKKR 157

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;TAS

GO:0009793 "embryo development ending in seed dormancy" evidence=NAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0042546 "cell wall biogenesis" evidence=RCA

GO:0044036 "cell wall macromolecule metabolic process" evidence=RCA

TAIR|locus:2060979 VND1 "vascular related NAC-domain protein 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 603 (217.3 bits), Expect = 9.3e-59, P = 9.3e-59
 Identities = 133/319 (41%), Positives = 183/319 (57%)

Query:    15 VPPGFRFHPTEEELLHYYLRKKVSSEKIDLDVIRDVDLNKLEPWDIQEKCKIGSTPQSDW 74
             VPPGFRFHPT+EEL+ YYLRKK++S+KIDLDVIRD+DL ++EPWD+QE+C+IG   Q++W
Sbjct:     9 VPPGFRFHPTDEELVGYYLRKKIASQKIDLDVIRDIDLYRIEPWDLQEQCRIGYEEQNEW 68

Query:    75 YFFSHKDKKYPXXXXXXXXXXXXFWKATGRDKVIHSNCRRIGMRKTLVFYKGRAPHGQKS 134
             YFFSHKDKKYP            FWKATGRDK ++   + IGMRKTLVFYKGRAP+G+KS
Sbjct:    69 YFFSHKDKKYPTGTRTNRATMAGFWKATGRDKAVYDKTKLIGMRKTLVFYKGRAPNGKKS 128

Query:   135 DWIMHEYRLDDNPNEITNVSNVMGDATQEESWVVCRIFKKKDHHKTLGSPTSSSINGNRM 194
             DWIMHEYRL+ + N             QEE WVVCR FKK+   +   + T SS   +  
Sbjct:   129 DWIMHEYRLESDENA----------PPQEEGWVVCRAFKKRATGQAKNTETWSS---SYF 175

Query:   195 FNSCNEGSLEQILQHMGGTCKEESDEPNNNLRLYRAILGTGTG-GFDHNDPFLKLPSLRS 253
             ++      +  ++  +    K++ +     L   + + G   G  +  ++ F++LP L+S
Sbjct:   176 YDEVAPNGVNSVMDPIDYISKQQHNIFGKGLMCKQELEGMVDGINYIQSNQFIQLPQLQS 235

Query:   254 PN-------SSG----SQNNYHHYPMPMVTEIEGXXXXXXXXXXXXXXXYHTETESSSGL 302
             P+       SS     S +N ++Y +P+  E E                    T    G 
Sbjct:   236 PSLPLMKRPSSSMSITSMDNNYNYKLPLADE-ESFESFIRGEDRRKKKKQVMMT----G- 289

Query:   303 TSWAALDRLVASQLNGQTE 321
              +W  LD+ VASQL  Q +
Sbjct:   290 -NWRELDKFVASQLMSQED 307

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;TAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0010200 "response to chitin" evidence=IEP

GO:0009741 "response to brassinosteroid stimulus" evidence=RCA

GO:0010089 "xylem development" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q84WP6	NAC43_ARATH	No assigned EC number	0.5673	0.8546	0.9342	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: NAC065 NAC domain protein, IPR003441 (379 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	399
pfam02365	130	pfam02365, NAM, No apical meristem (NAM) protein	2e-73

>gnl|CDD|216997 pfam02365, NAM, No apical meristem (NAM) protein

 Score =  224 bits (574), Expect = 2e-73
 Identities = 77/131 (58%), Positives = 101/131 (77%), Gaps = 4/131 (3%)

Query: 16  PPGFRFHPTEEELLHYYLRKKVSSEKIDL-DVIRDVDLNKLEPWDIQEKCKIGSTPQSDW 74
           PPGFRFHPT+EEL+ YYL++KV  + + L DVI +VD+ K EPWD+ +    G   +  W
Sbjct: 2   PPGFRFHPTDEELVVYYLKRKVLGKPLPLLDVIPEVDIYKFEPWDLPDGKAKGGDRE--W 59

Query: 75  YFFSHKDKKYPTGTRTNRATAAGFWKATGRDKVIHSNCRR-IGMRKTLVFYKGRAPHGQK 133
           YFFS +D+KYP G+RTNRAT +G+WKATG+DK + S     +GM+KTLVFYKGRAP G+K
Sbjct: 60  YFFSPRDRKYPNGSRTNRATGSGYWKATGKDKPVLSKGGEVVGMKKTLVFYKGRAPKGEK 119

Query: 134 SDWIMHEYRLD 144
           +DW+MHEYRL+
Sbjct: 120 TDWVMHEYRLE 130

This is a family of no apical meristem (NAM) proteins these are plant development proteins. Mutations in NAM result in the failure to develop a shoot apical meristem in petunia embryos. NAM is indicated as having a role in determining positions of meristems and primordial. One member of this family NAP (NAC-like, activated by AP3/PI) is encoded by the target genes of the AP3/PI transcriptional activators and functions in the transition between growth by cell division and cell expansion in stamens and petals. Length = 130

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	399
PF02365	129	NAM: No apical meristem (NAM) protein; InterPro: I	100.0

>PF02365 NAM: No apical meristem (NAM) protein; InterPro: IPR003441 The NAC domain (for Petunia hybrida (Petunia) NAM and for Arabidopsis ATAF1, ATAF2, and CUC2) is an N-terminal module of ~160 amino acids, which is found in proteins of the NAC family of plant-specific transcriptional regulators (no apical meristem (NAM) proteins) []

Probab=100.00  E-value=6.2e-43  Score=302.84  Aligned_cols=127  Identities=51%  Similarity=1.071  Sum_probs=97.2

Q ss_pred             CCCCceeCCChHHHHHHHHHHHhcCCCCCC-CceecCCCCCCCCcchhhhhccCCCCCCeEEEEecCCCCCCCCCccccc
Q 015853           15 VPPGFRFHPTEEELLHYYLRKKVSSEKIDL-DVIRDVDLNKLEPWDIQEKCKIGSTPQSDWYFFSHKDKKYPTGTRTNRA   93 (399)
Q Consensus        15 LPPGFRF~PTDEELV~~YLr~Kv~g~pl~~-~vI~evDVY~~ePWeL~~~~~~G~~~e~eWYFFspr~kKyp~G~R~nRa   93 (399)
                      |||||||+|||+|||.+||++|+.|++++. ++|+++|||.++||+|++...   ..+++||||+++++++.+|.|++|+
T Consensus         1 LP~G~rF~PtD~ELi~~yL~~k~~g~~~~~~~~i~~~Diy~~~P~~L~~~~~---~~~~~~yFF~~~~~~~~~~~r~~R~   77 (129)
T PF02365_consen    1 LPPGFRFRPTDEELINHYLRPKILGEPLPCEDVIHDVDIYSAHPWELPAKFK---GGDEEWYFFSPRKKKYPNGGRPNRV   77 (129)
T ss_dssp             --TTEEE---HHHHHHCTHHHHHTT-HHCS-CHSEE--GGGS-GGGCHHHSS---S-SSEEEEEEE----------S-EE
T ss_pred             CCCceEecCChHHHHHHHHHHHhcCCCCCcccceeecccCccChHHhhhhcc---CCCceEEEEEecccccCCccccccc
Confidence            899999999999999999999999999887 799999999999999995332   2467999999999999999999999


Q ss_pred             CCCceeeeCCCCeEEec-CCeEeeEEEEEEeecCCCCCCCCcCeEEEEEEeC
Q 015853           94 TAAGFWKATGRDKVIHS-NCRRIGMRKTLVFYKGRAPHGQKSDWIMHEYRLD  144 (399)
Q Consensus        94 tg~G~WKatG~dK~I~s-~g~~IG~KKtLvFYkgrap~g~KT~WiMhEYrL~  144 (399)
                      +++|+||++|+++.|.+ ++++||+||+|+||.++.+++.||+|+||||+|.
T Consensus        78 ~~~G~Wk~~g~~~~i~~~~g~~iG~k~~l~f~~~~~~~~~kt~W~M~EY~L~  129 (129)
T PF02365_consen   78 TGGGYWKSTGKEKPIKDPGGKVIGFKKTLVFYSGKSPNGKKTGWVMHEYSLE  129 (129)
T ss_dssp             ETTEEEEEECEEEEEEE-TTCEEEEEEEEEEEESSTTS-EEEEEEEEEEEE-
T ss_pred             ccceEEeecccccccccccceeeeeEEEEEEEeccCCCCCcCCeEEEEEEeC
Confidence            99999999999999987 8999999999999999888999999999999984

NAC proteins are involved in developmental processes, including formation of the shoot apical meristem, floral organs and lateral shoots, as well as in plant hormonal control and defence. The NAC domain is accompanied by diverse C-terminal transcriptional activation domains. The NAC domain has been shown to be a DNA-binding domain (DBD) and a dimerization domain [,]. The NAC domain can be subdivided into five subdomains (A-E). Each subdomain is distinguishable by blocks of heterogeneous amino acids or gaps. While the NAC domains were rich in basic amino acids (R, K and H) as a whole, the distribution of positive and negative amino acids in each subdomain were unequal. Subdomains C and D are rich in basic amino acids but poor in acidic amino acids, while subdomain B contains a high proportion of acidic amino acids. Putative nuclear localization signals (NLS) have been detected in subdomains C and D []. The DBD is contained within a 60 amino acid region located within subdomains D and E []. The overall structure of the NAC domain monomer consists of a very twisted antiparallel beta-sheet, which packs against an N-terminal alpha-helix on one side and one shorter helix on the other side surrounded by a few helical elements. The structure suggests that the NAC domain mediates dimerization through conserved interactions including a salt bridge, and DNA binding through the NAC dimer face rich in positive charges [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1UT4_A 3SWM_B 4DUL_B 3SWP_D 1UT7_B 3ULX_A.

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	399
1ut4_A	171	Structure Of The Conserved Domain Of Anac, A Member		1e-35
3swm_A	174	The Nac Domain Of Anac019 In Complex With Dna, Gold		1e-35
3ulx_A	174	Crystal Structural Of The Conserved Domain Of Rice		1e-35

>pdb|1UT4|A Chain A, Structure Of The Conserved Domain Of Anac, A Member Of The Nac Family Of Transcription Factors Length = 171

Iteration: 1
 Score =  147 bits (371), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 69/164 (42%), Positives = 101/164 (61%), Gaps = 11/164 (6%)
Query: 12  QSQVPPGFRFHPTEEELLHYYLRKKVSSEKIDLDVIRDVDLNKLEPWDIQEKCKIGSTPQ 71
           Q  +PPGFRF+PT+EEL+  YL +K +     L +I ++DL K +PW +  K   G   +
Sbjct: 14  QLSLPPGFRFYPTDEELMVQYLCRKAAGYDFSLQLIAEIDLYKFDPWVLPNKALFG---E 70
Query: 72  SDWYFFSHKDKKYPXXXXXXXXXXXXFWKATGRDKVIHSNCRRIGMRKTLVFYKGRAPHG 131
            +WYFFS +D+KYP            +WKATG DK+I +  +R+G++K LVFY G+AP G
Sbjct: 71  KEWYFFSPRDRKYPNGSRPNRVAGSGYWKATGTDKIISTEGQRVGIKKALVFYIGKAPKG 130
Query: 132 QKSDWIMHEYRLDDNPNEITNVSNVMGDATQEESWVVCRIFKKK 175
            K++WIMHEYRL +              +T+ + WV+CRI+KK+
Sbjct: 131 TKTNWIMHEYRLIEPSRR--------NGSTKLDDWVLCRIYKKQ 166

>pdb|3SWM|A Chain A, The Nac Domain Of Anac019 In Complex With Dna, Gold Derivative Length = 174

Iteration: 1
 Score =  147 bits (370), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 69/164 (42%), Positives = 101/164 (61%), Gaps = 11/164 (6%)
Query: 12  QSQVPPGFRFHPTEEELLHYYLRKKVSSEKIDLDVIRDVDLNKLEPWDIQEKCKIGSTPQ 71
           Q  +PPGFRF+PT+EEL+  YL +K +     L +I ++DL K +PW +  K   G   +
Sbjct: 17  QLSLPPGFRFYPTDEELMVQYLCRKAAGYDFSLQLIAEIDLYKFDPWVLPNKALFG---E 73
Query: 72  SDWYFFSHKDKKYPXXXXXXXXXXXXFWKATGRDKVIHSNCRRIGMRKTLVFYKGRAPHG 131
            +WYFFS +D+KYP            +WKATG DK+I +  +R+G++K LVFY G+AP G
Sbjct: 74  KEWYFFSPRDRKYPNGSRPNRVAGSGYWKATGTDKIISTEGQRVGIKKALVFYIGKAPKG 133
Query: 132 QKSDWIMHEYRLDDNPNEITNVSNVMGDATQEESWVVCRIFKKK 175
            K++WIMHEYRL +              +T+ + WV+CRI+KK+
Sbjct: 134 TKTNWIMHEYRLIEPSRR--------NGSTKLDDWVLCRIYKKQ 169

>pdb|3ULX|A Chain A, Crystal Structural Of The Conserved Domain Of Rice Stress-Responsive Nac1 Length = 174

Iteration: 1
 Score =  147 bits (370), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 66/168 (39%), Positives = 104/168 (61%), Gaps = 6/168 (3%)
Query: 9   VNGQSQVPPGFRFHPTEEELLHYYLRKKVSSEKIDLDVIRDVDLNKLEPWDIQEKCKIGS 68
              +  +PPGFRFHPT++EL+ +YL +K + +++ + +I +VDL K +PWD+ E+   G+
Sbjct: 9   AEAELNLPPGFRFHPTDDELVEHYLCRKAAGQRLPVPIIAEVDLYKFDPWDLPERALFGA 68
Query: 69  TPQSDWYFFSHKDKKYPXXXXXXXXXXXXFWKATGRDKVIHSNCRRIGMRKTLVFYKGRA 128
               +WYFF+ +D+KYP            +WKATG DK +    R +G++K LVFY G+A
Sbjct: 69  ---REWYFFTPRDRKYPNGSRPNRAAGNGYWKATGADKPVAPRGRTLGIKKALVFYAGKA 125
Query: 129 PHGQKSDWIMHEYRLDDNPNEITNVSNVMGDATQEESWVVCRIFKKKD 176
           P G K+DWIMHEYRL    +     +     + + + WV+CR++ KK+
Sbjct: 126 PRGVKTDWIMHEYRLA---DAGRAAAGAKKGSLRLDDWVLCRLYNKKN 170

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	399
3ulx_A	174	Stress-induced transcription factor NAC1; NAC fami	1e-101
1ut7_A	171	No apical meristem protein; transcription regulati	4e-98

>3ulx_A Stress-induced transcription factor NAC1; NAC family, stress-responsive, DNA binding protein; 2.60A {Oryza sativa subsp} Length = 174

 Score =  296 bits (759), Expect = e-101
 Identities = 74/179 (41%), Positives = 113/179 (63%), Gaps = 6/179 (3%)

Query: 1   MPESMSISVNGQSQVPPGFRFHPTEEELLHYYLRKKVSSEKIDLDVIRDVDLNKLEPWDI 60
           M          +  +PPGFRFHPT++EL+ +YL +K + +++ + +I +VDL K +PWD+
Sbjct: 1   MGMRRERDAEAELNLPPGFRFHPTDDELVEHYLCRKAAGQRLPVPIIAEVDLYKFDPWDL 60

Query: 61  QEKCKIGSTPQSDWYFFSHKDKKYPTGTRTNRATAAGFWKATGRDKVIHSNCRRIGMRKT 120
            E+   G+    +WYFF+ +D+KYP G+R NRA   G+WKATG DK +    R +G++K 
Sbjct: 61  PERALFGAR---EWYFFTPRDRKYPNGSRPNRAAGNGYWKATGADKPVAPRGRTLGIKKA 117

Query: 121 LVFYKGRAPHGQKSDWIMHEYRLDDNPNEITNVSNVMGDATQEESWVVCRIFKKKDHHK 179
           LVFY G+AP G K+DWIMHEYRL D        +     + + + WV+CR++ KK+  +
Sbjct: 118 LVFYAGKAPRGVKTDWIMHEYRLADAG---RAAAGAKKGSLRLDDWVLCRLYNKKNEWE 173

>1ut7_A No apical meristem protein; transcription regulation, transcription, transcription factor, DNA binding, abscisic acid response, NAC domain; 1.9A {Arabidopsis thaliana} SCOP: b.143.1.1 PDB: 1ut4_A 4dul_A 3swp_A 3swm_A Length = 171

 Score =  288 bits (740), Expect = 4e-98
 Identities = 74/170 (43%), Positives = 108/170 (63%), Gaps = 11/170 (6%)

Query: 10  NGQSQVPPGFRFHPTEEELLHYYLRKKVSSEKIDLDVIRDVDLNKLEPWDIQEKCKIGST 69
             Q  +PPGFRF+PT+EEL+  YL +K +     L +I ++DL K +PW +  K   G  
Sbjct: 12  LTQLSLPPGFRFYPTDEELMVQYLCRKAAGYDFSLQLIAEIDLYKFDPWVLPNKALFGE- 70

Query: 70  PQSDWYFFSHKDKKYPTGTRTNRATAAGFWKATGRDKVIHSNCRRIGMRKTLVFYKGRAP 129
              +WYFFS +D+KYP G+R NR   +G+WKATG DK+I +  +R+G++K LVFY G+AP
Sbjct: 71  --KEWYFFSPRDRKYPNGSRPNRVAGSGYWKATGTDKIISTEGQRVGIKKALVFYIGKAP 128

Query: 130 HGQKSDWIMHEYRLDDNPNEITNVSNVMGDATQEESWVVCRIFKKKDHHK 179
            G K++WIMHEYRL +      +        T+ + WV+CRI+KK+   +
Sbjct: 129 KGTKTNWIMHEYRLIEPSRRNGS--------TKLDDWVLCRIYKKQSSAQ 170

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	399
3ulx_A	174	Stress-induced transcription factor NAC1; NAC fami	100.0
1ut7_A	171	No apical meristem protein; transcription regulati	100.0

>3ulx_A Stress-induced transcription factor NAC1; NAC family, stress-responsive, DNA binding protein; 2.60A {Oryza sativa subsp} SCOP: b.143.1.1

Probab=100.00  E-value=3.4e-57  Score=413.39  Aligned_cols=163  Identities=45%  Similarity=1.001  Sum_probs=137.7

Q ss_pred             cCCCCCCCCCceeCCChHHHHHHHHHHHhcCCCCCCCceecCCCCCCCCcchhhhhccCCCCCCeEEEEecCCCCCCCCC
Q 015853            9 VNGQSQVPPGFRFHPTEEELLHYYLRKKVSSEKIDLDVIRDVDLNKLEPWDIQEKCKIGSTPQSDWYFFSHKDKKYPTGT   88 (399)
Q Consensus         9 ~n~~s~LPPGFRF~PTDEELV~~YLr~Kv~g~pl~~~vI~evDVY~~ePWeL~~~~~~G~~~e~eWYFFspr~kKyp~G~   88 (399)
                      +.++..|||||||||||||||.|||++|+.|.+++.++|+++|||++|||+|++.+..|   +++||||+++++||++|.
T Consensus         9 ~~~~~~LPpGfRF~PTDeELV~~YL~~K~~g~~~~~~~I~evDvy~~~Pw~Lp~~~~~g---~~ewYFFs~r~~ky~~g~   85 (174)
T 3ulx_A            9 AEAELNLPPGFRFHPTDDELVEHYLCRKAAGQRLPVPIIAEVDLYKFDPWDLPERALFG---AREWYFFTPRDRKYPNGS   85 (174)
T ss_dssp             CCSTTTCCTTCCCCCCHHHHHHHTHHHHHHTCCCSSSCCEECCGGGSCGGGSGGGCSSC---SSEEEEEEECCC-----C
T ss_pred             cccccCCCCcceeCCCHHHHHHHHHHHHhcCCCCCcCeeeecccccCCchhhhhhhccC---CceEEEEeccccccCCCC
Confidence            34567999999999999999999999999999999999999999999999999987654   689999999999999999


Q ss_pred             cccccCCCceeeeCCCCeEEecCCeEeeEEEEEEeecCCCCCCCCcCeEEEEEEeCCCCCccccccccCCCCCCCCCeEE
Q 015853           89 RTNRATAAGFWKATGRDKVIHSNCRRIGMRKTLVFYKGRAPHGQKSDWIMHEYRLDDNPNEITNVSNVMGDATQEESWVV  168 (399)
Q Consensus        89 R~nRatg~G~WKatG~dK~I~s~g~~IG~KKtLvFYkgrap~g~KT~WiMhEYrL~~~~~~~~~~s~~~~~~~~~d~~VL  168 (399)
                      |+||+|++||||+||+++.|.+++++||+||+|+||+|++|++.||+|+||||+|.+......   .........++|||
T Consensus        86 R~nR~t~~G~WkatG~dk~I~~~g~~vG~KktLvFy~g~~p~g~kT~WvMhEY~L~~~~~~~~---~~~~~~~~~~~wVl  162 (174)
T 3ulx_A           86 RPNRAAGNGYWKATGADKPVAPRGRTLGIKKALVFYAGKAPRGVKTDWIMHEYRLADAGRAAA---GAKKGSLRLDDWVL  162 (174)
T ss_dssp             CSCEEETTEEEEECSCCEEECCSSSCCEEEEEEEEEESSTTSCEEEEEEEEEEEECSCC--------------CCSSEEE
T ss_pred             CceeecCCceEccCCCCcEEeeCCcEEEEEEEEEEecCCCCCCCcCCeEEEEEEeCCCCCccc---ccccCCCCCCCEEE
Confidence            999999999999999999999889999999999999999999999999999999998754310   00111245789999


Q ss_pred             EEEEEeCCC
Q 015853          169 CRIFKKKDH  177 (399)
Q Consensus       169 CRIykK~~~  177 (399)
                      ||||+|++.
T Consensus       163 Crvf~K~~~  171 (174)
T 3ulx_A          163 CRLYNKKNE  171 (174)
T ss_dssp             EEEEESCC-
T ss_pred             EEEEEcCCC
Confidence            999999863

>1ut7_A No apical meristem protein; transcription regulation, transcription, transcription factor, DNA binding, abscisic acid response, NAC domain; 1.9A {Arabidopsis thaliana} SCOP: b.143.1.1 PDB: 1ut4_A 4dul_A 3swp_A 3swm_A

Probab=100.00  E-value=2.9e-56  Score=406.15  Aligned_cols=157  Identities=47%  Similarity=1.006  Sum_probs=133.1

Q ss_pred             CCCCCCCCCceeCCChHHHHHHHHHHHhcCCCCCCCceecCCCCCCCCcchhhhhccCCCCCCeEEEEecCCCCCCCCCc
Q 015853           10 NGQSQVPPGFRFHPTEEELLHYYLRKKVSSEKIDLDVIRDVDLNKLEPWDIQEKCKIGSTPQSDWYFFSHKDKKYPTGTR   89 (399)
Q Consensus        10 n~~s~LPPGFRF~PTDEELV~~YLr~Kv~g~pl~~~vI~evDVY~~ePWeL~~~~~~G~~~e~eWYFFspr~kKyp~G~R   89 (399)
                      ..+..|||||||||||||||.|||++|+.|.+++.++|+++|||++|||+|++.+..|   +++||||+++++||++|.|
T Consensus        12 ~~~~~lPpGfRF~PTDeELv~~YL~~K~~g~~~~~~~I~e~Diy~~~Pw~Lp~~~~~g---~~ewyFFs~r~~k~~~g~R   88 (171)
T 1ut7_A           12 LTQLSLPPGFRFYPTDEELMVQYLCRKAAGYDFSLQLIAEIDLYKFDPWVLPNKALFG---EKEWYFFSPRDRKYPNGSR   88 (171)
T ss_dssp             CCSSCCCTTEEECCCHHHHHHHTHHHHHTTCCCSSCCSEECCGGGSCGGGHHHHSSSC---SSEEEEEEECCC-------
T ss_pred             ccccCCCCcceeCCChHHHHHHHHHHHhcCCCCCCCeEeecccccCChhHhhchhhcC---CccEEEEeccccccCCCCc
Confidence            3567899999999999999999999999999999999999999999999999987544   7899999999999999999


Q ss_pred             ccccCCCceeeeCCCCeEEecCCeEeeEEEEEEeecCCCCCCCCcCeEEEEEEeCCCCCccccccccCCCCCCCCCeEEE
Q 015853           90 TNRATAAGFWKATGRDKVIHSNCRRIGMRKTLVFYKGRAPHGQKSDWIMHEYRLDDNPNEITNVSNVMGDATQEESWVVC  169 (399)
Q Consensus        90 ~nRatg~G~WKatG~dK~I~s~g~~IG~KKtLvFYkgrap~g~KT~WiMhEYrL~~~~~~~~~~s~~~~~~~~~d~~VLC  169 (399)
                      +||+|++||||+||+++.|+.++.+||+||+|+||+|++|++.||+|+||||+|......        ......++||||
T Consensus        89 ~~R~t~~G~Wk~tG~~k~I~~~~~~vG~KktLvFy~g~~p~g~kT~WvMhEY~l~~~~~~--------~~~~~~~~~VlC  160 (171)
T 1ut7_A           89 PNRVAGSGYWKATGTDKIISTEGQRVGIKKALVFYIGKAPKGTKTNWIMHEYRLIEPSRR--------NGSTKLDDWVLC  160 (171)
T ss_dssp             CCEEETTEEEEEEEEEEEEEETTEEEEEEEEEEEEESSTTSCEEEEEEEEEEEECCCC----------------CCEEEE
T ss_pred             ccccCCCCEEeccCCCceEEecCcEEEEEEEEEEEcCcCCCCCcCCeEEEEEEcCCCccc--------cCcccCCCEEEE
Confidence            999999999999999999998889999999999999999999999999999999987532        012456899999


Q ss_pred             EEEEeCCC
Q 015853          170 RIFKKKDH  177 (399)
Q Consensus       170 RIykK~~~  177 (399)
                      |||+|+..
T Consensus       161 rv~~k~~~  168 (171)
T 1ut7_A          161 RIYKKQSS  168 (171)
T ss_dssp             EEEECC--
T ss_pred             EEEEcCCC
Confidence            99999864

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	399
d1ut7a_	166	b.143.1.1 (A:) No apical meristem (NAM, ANAC) {Mou	1e-66

>d1ut7a_ b.143.1.1 (A:) No apical meristem (NAM, ANAC) {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 166

class: All beta proteins
fold: NAC domain
superfamily: NAC domain
family: NAC domain
domain: No apical meristem (NAM, ANAC)
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

 Score =  207 bits (527), Expect = 1e-66
 Identities = 74/164 (45%), Positives = 108/164 (65%), Gaps = 11/164 (6%)

Query: 12  QSQVPPGFRFHPTEEELLHYYLRKKVSSEKIDLDVIRDVDLNKLEPWDIQEKCKIGSTPQ 71
           Q  +PPGFRF+PT+EEL+  YL +K +     L +I ++DL K +PW +  K   G   +
Sbjct: 14  QLSLPPGFRFYPTDEELMVQYLCRKAAGYDFSLQLIAEIDLYKFDPWVLPNKALFG---E 70

Query: 72  SDWYFFSHKDKKYPTGTRTNRATAAGFWKATGRDKVIHSNCRRIGMRKTLVFYKGRAPHG 131
            +WYFFS +D+KYP G+R NR   +G+WKATG DK+I +  +R+G++K LVFY G+AP G
Sbjct: 71  KEWYFFSPRDRKYPNGSRPNRVAGSGYWKATGTDKIISTEGQRVGIKKALVFYIGKAPKG 130

Query: 132 QKSDWIMHEYRLDDNPNEITNVSNVMGDATQEESWVVCRIFKKK 175
            K++WIMHEYRL +              +T+ + WV+CRI+KK+
Sbjct: 131 TKTNWIMHEYRLIEPSRR--------NGSTKLDDWVLCRIYKKQ 166

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	399
d1ut7a_	166	No apical meristem (NAM, ANAC) {Mouse-ear cress (A	100.0

>d1ut7a_ b.143.1.1 (A:) No apical meristem (NAM, ANAC) {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All beta proteins
fold: NAC domain
superfamily: NAC domain
family: NAC domain
domain: No apical meristem (NAM, ANAC)
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=100.00  E-value=1.8e-53  Score=382.24  Aligned_cols=156  Identities=47%  Similarity=1.001  Sum_probs=131.9

Q ss_pred             cCCCCCCCCCceeCCChHHHHHHHHHHHhcCCCCCCCceecCCCCCCCCcchhhhhccCCCCCCeEEEEecCCCCCCCCC
Q 015853            9 VNGQSQVPPGFRFHPTEEELLHYYLRKKVSSEKIDLDVIRDVDLNKLEPWDIQEKCKIGSTPQSDWYFFSHKDKKYPTGT   88 (399)
Q Consensus         9 ~n~~s~LPPGFRF~PTDEELV~~YLr~Kv~g~pl~~~vI~evDVY~~ePWeL~~~~~~G~~~e~eWYFFspr~kKyp~G~   88 (399)
                      ...+..|||||||+|||||||.+||++|+.|.+++.++|+++|||++|||+|++....+   +++||||+++.+++++|.
T Consensus        11 ~~~~l~LPpG~RF~PTDeELv~~YL~~Ki~g~~l~~~~I~~~Dvy~~~Pw~Lp~~~~~~---~~~wyFft~~~~k~~~g~   87 (166)
T d1ut7a_          11 PLTQLSLPPGFRFYPTDEELMVQYLCRKAAGYDFSLQLIAEIDLYKFDPWVLPNKALFG---EKEWYFFSPRDRKYPNGS   87 (166)
T ss_dssp             -CCSSCCCTTEEECCCHHHHHHHTHHHHHTTCCCSSCCSEECCGGGSCGGGHHHHSSSC---SSEEEEEEECCC------
T ss_pred             ccccccCCCccccCCCcHHHHHHHHHHHHcCCCCCcccceeccCCcCChhhccchhccC---cceEEEEeeeccccCCCC
Confidence            44567899999999999999999999999999999999999999999999999876433   779999999999999999


Q ss_pred             cccccCCCceeeeCCCCeEEecCCeEeeEEEEEEeecCCCCCCCCcCeEEEEEEeCCCCCccccccccCCCCCCCCCeEE
Q 015853           89 RTNRATAAGFWKATGRDKVIHSNCRRIGMRKTLVFYKGRAPHGQKSDWIMHEYRLDDNPNEITNVSNVMGDATQEESWVV  168 (399)
Q Consensus        89 R~nRatg~G~WKatG~dK~I~s~g~~IG~KKtLvFYkgrap~g~KT~WiMhEYrL~~~~~~~~~~s~~~~~~~~~d~~VL  168 (399)
                      |.+|+|++|+||++|++++|.+++.+||+||+|+||+++.+++.||+|+||||+|.+.....        .....++|||
T Consensus        88 r~~R~~g~G~Wk~~g~~~~i~~~g~~vG~kk~l~fy~~~~~~~~~t~W~M~EY~l~~~~~~~--------~~~~~~~~VL  159 (166)
T d1ut7a_          88 RPNRVAGSGYWKATGTDKIISTEGQRVGIKKALVFYIGKAPKGTKTNWIMHEYRLIEPSRRN--------GSTKLDDWVL  159 (166)
T ss_dssp             -CCEEETTEEEEEEEEEEEEEETTEEEEEEEEEEEEESSTTSCEEEEEEEEEEEECCCC----------------CCEEE
T ss_pred             ccccccCCCEecccCCCceEecCCcEEEEEEEEEEEecCCCCCCccCeEEEEEecCCccccc--------CccccCCEEE
Confidence            99999999999999999999999999999999999999999999999999999998875431        1245678999


Q ss_pred             EEEEEeC
Q 015853          169 CRIFKKK  175 (399)
Q Consensus       169 CRIykK~  175 (399)
                      ||||+|+
T Consensus       160 CrI~~Kk  166 (166)
T d1ut7a_         160 CRIYKKQ  166 (166)
T ss_dssp             EEEEECC
T ss_pred             EEEEecC
Confidence            9999985