Citrus Sinensis ID: 015865

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------40
MASALETLCGQAYGAEQFQKLGIYKHCSIISLIIVCFPISLLWIFTDKLLILVGQDPSISRVAKKYAIFLIPNLFSYAVLQSFIRFFQVQSLILPMLYSSVLTLCFHIPLCWALVFKIKLGSNGAALAVGLSYWFNVLLLGFYIKYSSECEKTRASFSIDVFSSIKEFIRFSVPSAVMVCFEWWSYEVLILLSGLLPNPKLEASVFSLCFTITYLHYFIPYGFGSTVSTRVSNELGAGNPKAAKMAVCAIIILAAAEMVTVSIVLLFCRHILGYALSSSENIVHRLADMVPFICLSIIMDSLQAVLSGVARGSGWQKIGAFVNLGAYYLVGIPIAAVLAFVFQLKGKGLLIGLATGSFVQAALLALKIVFTDWGKQASKARERIFEGDSQQRQSQEIDS
cccccHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHEEccccccccccccHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHEEHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccccHHcccc
cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHcccccHccccccHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHcccccccccHcccc
MASALETLCGQAYGAEQFQKLGIYKHCSIISLIIVCFPISLLWIFTDKLLIlvgqdpsiSRVAKKYAIFLIPNLFSYAVLQSFIRFFQVQSLILPMLYSSVLTLCFHIPLCWALVFKIKLGSNGAALAVGLSYWFNVLLLGFYIKYSSECEKTRASFSIDVFSSIKEFIRFSVPSAVMVCFEWWSYEVLILLsgllpnpkleasVFSLCFTITYLHyfipygfgstvstrvsnelgagnpkAAKMAVCAIIILAAAEMVTVSIVLLFCRHILGYALSSSENIVHRLADMVPFICLSIIMDSLQAVLSGVARGSGWQKIGAFVNLGAYYLVGIPIAAVLAFVFQLKGKGLLIGLATGSFVQAALLALKIVFTDWGKQASKARERIFEGDSQQRQSQEIDS
MASALETLCGQAYGAEQFQKLGIYKHCSIISLIIVCFPISLLWIFTDKLLILVGQDPSISRVAKKYAIFLIPNLFSYAVLQSFIRFFQVQSLILPMLYSSVLTLCFHIPLCWALVFKIKLGSNGAALAVGLSYWFNVLLLGFYIKYSSECEKTRASFSIDVFSSIKEFIRFSVPSAVMVCFEWWSYEVLILLSGLLPNPKLEASVFSLCFTITYLHYFIPYGFGSTVSTRVSNELGAGNPKAAKMAVCAIIILAAAEMVTVSIVLLFCRHILGYALSSSENIVHRLADMVPFICLSIIMDSLQAVLSGVARGSGWQKIGAFVNLGAYYLVGIPIAAVLAFVFQLKGKGLLIGLATGSFVQAALLALKIVFTDWGKQASKARErifegdsqqrqsqeids
MASALETLCGQAYGAEQFQKLGIYKHCSIISLIIVCFPISLLWIFTDKLLILVGQDPSISRVAKKYAIFLIPNLFSYAVLQSFIRFFQVQSLILPMLYSSVLTLCFHIPLCWALVFKIKLGSNGAALAVGLSYWFNVLLLGFYIKYSSECEKTRASFSIDVFSSIKEFIRFSVPSAVMVCFEWWSYEVLILLSGLLPNPKLEASVFSLCFTITYLHYFIPYGFGSTVSTRVSNELGAGNPKAAKMAVCAIIILAAAEMVTVSIVLLFCRHILGYALSSSENIVHRLADMVPFICLSIIMDSLQAVLSGVARGSGWQKIGAFVNLGAYYLVGIPIAAVLAFVFQLKGKGLLIGLATGSFVQAALLALKIVFTDWGKQASKARERIFEGDSQQRQSQEIDS
******TLCGQAYGAEQFQKLGIYKHCSIISLIIVCFPISLLWIFTDKLLILVGQDPSISRVAKKYAIFLIPNLFSYAVLQSFIRFFQVQSLILPMLYSSVLTLCFHIPLCWALVFKIKLGSNGAALAVGLSYWFNVLLLGFYIKYSSECEKTRASFSIDVFSSIKEFIRFSVPSAVMVCFEWWSYEVLILLSGLLPNPKLEASVFSLCFTITYLHYFIPYGFGSTVSTRVSNELGAGNPKAAKMAVCAIIILAAAEMVTVSIVLLFCRHILGYALSSSENIVHRLADMVPFICLSIIMDSLQAVLSGVARGSGWQKIGAFVNLGAYYLVGIPIAAVLAFVFQLKGKGLLIGLATGSFVQAALLALKIVFTDWGK************************
MASALETLCGQAYGAEQFQKLGIYKHCSIISLIIVCFPISLLWIFTDKLLILVGQDPSISRVAKKYAIFLIPNLFSYAVLQSFIRFFQVQSLILPMLYSSVLTLCFHIPLCWALVFKIKLGSNGAALAVGLSYWFNVLLLGFYIKYSSECEKTRASFSIDVFSSIKEFIRFSVPSAVMVCFEWWSYEVLILLSGLLPNPKLEASVFSLCFTITYLHYFIPYGFGSTVSTRVSNELGAGNPKAAKMAVCAIIILAAAEMVTVSIVLLFCRHILGYALSSSENIVHRLADMVPFICLSIIMDSLQAVLSGVARGSGWQKIGAFVNLGAYYLVGIPIAAVLAFVFQLKGKGLLIGLATGSFVQAALLALKIVFTDWGKQASK********************
MASALETLCGQAYGAEQFQKLGIYKHCSIISLIIVCFPISLLWIFTDKLLILVGQDPSISRVAKKYAIFLIPNLFSYAVLQSFIRFFQVQSLILPMLYSSVLTLCFHIPLCWALVFKIKLGSNGAALAVGLSYWFNVLLLGFYIKYSSECEKTRASFSIDVFSSIKEFIRFSVPSAVMVCFEWWSYEVLILLSGLLPNPKLEASVFSLCFTITYLHYFIPYGFGSTVSTRVSNELGAGNPKAAKMAVCAIIILAAAEMVTVSIVLLFCRHILGYALSSSENIVHRLADMVPFICLSIIMDSLQAVLSGVARGSGWQKIGAFVNLGAYYLVGIPIAAVLAFVFQLKGKGLLIGLATGSFVQAALLALKIVFTDWGKQASKARE*****************
**SALETLCGQAYGAEQFQKLGIYKHCSIISLIIVCFPISLLWIFTDKLLILVGQDPSISRVAKKYAIFLIPNLFSYAVLQSFIRFFQVQSLILPMLYSSVLTLCFHIPLCWALVFKIKLGSNGAALAVGLSYWFNVLLLGFYIKYSSECEKTRASFSIDVFSSIKEFIRFSVPSAVMVCFEWWSYEVLILLSGLLPNPKLEASVFSLCFTITYLHYFIPYGFGSTVSTRVSNELGAGNPKAAKMAVCAIIILAAAEMVTVSIVLLFCRHILGYALSSSENIVHRLADMVPFICLSIIMDSLQAVLSGVARGSGWQKIGAFVNLGAYYLVGIPIAAVLAFVFQLKGKGLLIGLATGSFVQAALLALKIVFTDWGKQASKARERIFE*************
iiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiHHHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiii
ooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooo
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MASALETLCGQAYGAEQFQKLGIYKHCSIISLIIVCFPISLLWIFTDKLLILVGQDPSISRVAKKYAIFLIPNLFSYAVLQSFIRFFQVQSLILPMLYSSVLTLCFHIPLCWALVFKIKLGSNGAALAVGLSYWFNVLLLGFYIKYSSECEKTRASFSIDVFSSIKEFIRFSVPSAVMVCFEWWSYEVLILLSGLLPNPKLEASVFSLCFTITYLHYFIPYGFGSTVSTRVSNELGAGNPKAAKMAVCAIIILAAAEMVTVSIVLLFCRHILGYALSSSENIVHRLADMVPFICLSIIMDSLQAVLSGVARGSGWQKIGAFVNLGAYYLVGIPIAAVLAFVFQLKGKGLLIGLATGSFVQAALLALKIVFTDWGKQASKARERIFEGDSQQRQSQEIDS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query399 2.2.26 [Sep-21-2011]
Q8GXM8476 MATE efflux family protei no no 0.974 0.817 0.521 1e-117
Q9SIA5476 MATE efflux family protei no no 0.977 0.819 0.515 1e-116
Q8RWF5483 MATE efflux family protei no no 0.962 0.795 0.526 1e-114
Q9SIA4476 MATE efflux family protei no no 0.977 0.819 0.533 1e-113
Q9SIA3476 MATE efflux family protei no no 0.974 0.817 0.519 1e-113
Q9SIA1477 MATE efflux family protei no no 0.962 0.805 0.518 1e-112
Q9LUH3469 MATE efflux family protei no no 0.939 0.799 0.397 4e-74
Q9LUH2477 MATE efflux family protei no no 0.939 0.786 0.394 3e-72
Q9LYT3507 Protein TRANSPARENT TESTA no no 0.979 0.771 0.326 5e-62
Q5RFD2570 Multidrug and toxin extru yes no 0.949 0.664 0.314 3e-50
>sp|Q8GXM8|MATE7_ARATH MATE efflux family protein 7 OS=Arabidopsis thaliana GN=DTXL3 PE=2 SV=1 Back     alignment and function desciption
 Score =  422 bits (1086), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 203/389 (52%), Positives = 277/389 (71%)

Query: 1   MASALETLCGQAYGAEQFQKLGIYKHCSIISLIIVCFPISLLWIFTDKLLILVGQDPSIS 60
           +  ALETLCGQAYGAEQ++K+G Y + ++ S I +CF IS+LWI+ +KLLI +GQ+P IS
Sbjct: 85  LVGALETLCGQAYGAEQYEKIGTYTYSAMASNIPICFIISILWIYIEKLLITLGQEPDIS 144

Query: 61  RVAKKYAIFLIPNLFSYAVLQSFIRFFQVQSLILPMLYSSVLTLCFHIPLCWALVFKIKL 120
           RVA  Y+++L+P LF++A+     RF   Q L++ +LYS++ TL FHI +CW LVF + L
Sbjct: 145 RVAGSYSLWLVPALFAHAIFLPLTRFLLAQGLVISLLYSAMTTLLFHIAVCWTLVFALGL 204

Query: 121 GSNGAALAVGLSYWFNVLLLGFYIKYSSECEKTRASFSIDVFSSIKEFIRFSVPSAVMVC 180
           GSNGAA+A+ LS+WF  ++L  ++++ S CEKTR   S D  SSIK++ ++ VPSA ++C
Sbjct: 205 GSNGAAIAISLSFWFYAVILSCHVRFFSSCEKTRGFVSNDFMSSIKQYFQYGVPSAGLIC 264

Query: 181 FEWWSYEVLILLSGLLPNPKLEASVFSLCFTITYLHYFIPYGFGSTVSTRVSNELGAGNP 240
            EWW +E+LIL SGLLPNPKLE SV S+C TI  LHY IP G  + VSTRVSN+LGAGNP
Sbjct: 265 LEWWLFELLILCSGLLPNPKLETSVLSICLTIGTLHYVIPSGVAAAVSTRVSNKLGAGNP 324

Query: 241 KAAKMAVCAIIILAAAEMVTVSIVLLFCRHILGYALSSSENIVHRLADMVPFICLSIIMD 300
           + A+++V A + L   E    S +L  CR+I+GY  S+S+ +V  +AD+ P +CLS I+D
Sbjct: 325 QVARVSVLAGLCLWLVESAFFSTLLFTCRNIIGYTFSNSKEVVDYVADISPLLCLSFILD 384

Query: 301 SLQAVLSGVARGSGWQKIGAFVNLGAYYLVGIPIAAVLAFVFQLKGKGLLIGLATGSFVQ 360
            L AVL+GVARG GWQ IGA +N+ AYYLVG P+   LAF  +  GKGL  G+  GS VQ
Sbjct: 385 GLTAVLNGVARGCGWQHIGALINVVAYYLVGAPVGVYLAFSREWNGKGLWCGVMVGSAVQ 444

Query: 361 AALLALKIVFTDWGKQASKARERIFEGDS 389
           A LLA+     +W +QA KAR+RI   ++
Sbjct: 445 ATLLAIVTASMNWKEQAEKARKRIISTEN 473

Arabidopsis thaliana (taxid: 3702)
>sp|Q9SIA5|DTX1_ARATH MATE efflux family protein DTX1 OS=Arabidopsis thaliana GN=DTX1 PE=2 SV=1 Back     alignment and function description
>sp|Q8RWF5|MATE9_ARATH MATE efflux family protein 9 OS=Arabidopsis thaliana GN=DTXL5 PE=2 SV=1 Back     alignment and function description
>sp|Q9SIA4|MATE5_ARATH MATE efflux family protein 5 OS=Arabidopsis thaliana GN=DTXL1 PE=3 SV=1 Back     alignment and function description
>sp|Q9SIA3|MATE6_ARATH MATE efflux family protein 6 OS=Arabidopsis thaliana GN=DTXL2 PE=3 SV=2 Back     alignment and function description
>sp|Q9SIA1|MATE8_ARATH MATE efflux family protein 8 OS=Arabidopsis thaliana GN=DTXL4 PE=3 SV=2 Back     alignment and function description
>sp|Q9LUH3|LAL5_ARATH MATE efflux family protein LAL5 OS=Arabidopsis thaliana GN=LAL5 PE=2 SV=1 Back     alignment and function description
>sp|Q9LUH2|ALF5_ARATH MATE efflux family protein ALF5 OS=Arabidopsis thaliana GN=ALF5 PE=2 SV=1 Back     alignment and function description
>sp|Q9LYT3|TT12_ARATH Protein TRANSPARENT TESTA 12 OS=Arabidopsis thaliana GN=TT12 PE=2 SV=1 Back     alignment and function description
>sp|Q5RFD2|S47A1_PONAB Multidrug and toxin extrusion protein 1 OS=Pongo abelii GN=SLC47A1 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query399
449481521459 PREDICTED: MATE efflux family protein 9- 0.974 0.847 0.634 1e-139
449447587459 PREDICTED: MATE efflux family protein DT 0.974 0.847 0.634 1e-139
224077218475 predicted protein [Populus trichocarpa] 0.992 0.833 0.601 1e-135
356499620475 PREDICTED: MATE efflux family protein DT 0.972 0.816 0.587 1e-134
356567250462 PREDICTED: MATE efflux family protein DT 1.0 0.863 0.572 1e-133
359488145494 PREDICTED: MATE efflux family protein 5- 1.0 0.807 0.604 1e-133
356573950498 PREDICTED: MATE efflux family protein 8- 0.972 0.779 0.556 1e-133
359488147483 PREDICTED: LOW QUALITY PROTEIN: MATE eff 0.987 0.815 0.598 1e-133
296087229 501 unnamed protein product [Vitis vinifera] 1.0 0.796 0.604 1e-133
356515374480 PREDICTED: MATE efflux family protein DT 1.0 0.831 0.572 1e-133
>gi|449481521|ref|XP_004156207.1| PREDICTED: MATE efflux family protein 9-like [Cucumis sativus] Back     alignment and taxonomy information
 Score =  502 bits (1293), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 247/389 (63%), Positives = 300/389 (77%)

Query: 1   MASALETLCGQAYGAEQFQKLGIYKHCSIISLIIVCFPISLLWIFTDKLLILVGQDPSIS 60
           MA ALETLCGQAYGAEQ+ KLGIY +  IISL++VC PIS+LW FTDKLLIL GQDPSIS
Sbjct: 70  MAGALETLCGQAYGAEQYHKLGIYTYSCIISLLLVCLPISILWFFTDKLLILTGQDPSIS 129

Query: 61  RVAKKYAIFLIPNLFSYAVLQSFIRFFQVQSLILPMLYSSVLTLCFHIPLCWALVFKIKL 120
            VA+ Y+IFLIPNLF+YA+LQS +R+   QSLILP+L+ S +TL  HIP+CW LV     
Sbjct: 130 SVARSYSIFLIPNLFAYAILQSLMRYLLTQSLILPLLFFSFVTLSLHIPICWLLVVHFNF 189

Query: 121 GSNGAALAVGLSYWFNVLLLGFYIKYSSECEKTRASFSIDVFSSIKEFIRFSVPSAVMVC 180
              GAALA+G+SYW N L L  YI +S  C KTRA FS +  SSI +FIR ++PSA+MVC
Sbjct: 190 KVIGAALALGISYWLNALFLCLYIFFSPSCNKTRAPFSSEAISSIPKFIRLALPSALMVC 249

Query: 181 FEWWSYEVLILLSGLLPNPKLEASVFSLCFTITYLHYFIPYGFGSTVSTRVSNELGAGNP 240
            EWWSYEV++LLSGLLPNPK+EASV S+CF+ITYLHYFIPYG G+TVSTRVSNELGAGNP
Sbjct: 250 LEWWSYEVILLLSGLLPNPKVEASVLSICFSITYLHYFIPYGLGATVSTRVSNELGAGNP 309

Query: 241 KAAKMAVCAIIILAAAEMVTVSIVLLFCRHILGYALSSSENIVHRLADMVPFICLSIIMD 300
           + AK+AV  + +L   E + VS+ L  C   LGYA +S   I + +A M P ICLSI++D
Sbjct: 310 EGAKVAVKVVGVLGIIESIVVSLTLFGCHKFLGYAFTSDTEIANNIASMWPLICLSILID 369

Query: 301 SLQAVLSGVARGSGWQKIGAFVNLGAYYLVGIPIAAVLAFVFQLKGKGLLIGLATGSFVQ 360
           S   VLSGVARGSGWQ +GA+VNLG+YY+VGIP+AAVLAFV  L+ KGL IGL +G+ +Q
Sbjct: 370 SFLGVLSGVARGSGWQNLGAYVNLGSYYIVGIPLAAVLAFVVHLRVKGLWIGLVSGATLQ 429

Query: 361 AALLALKIVFTDWGKQASKARERIFEGDS 389
             L AL   FT+W +QA KARER+ EG +
Sbjct: 430 TFLFALITTFTNWHQQALKARERVLEGGN 458

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|449447587|ref|XP_004141549.1| PREDICTED: MATE efflux family protein DTX1-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|224077218|ref|XP_002305184.1| predicted protein [Populus trichocarpa] gi|222848148|gb|EEE85695.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356499620|ref|XP_003518635.1| PREDICTED: MATE efflux family protein DTX1-like isoform 1 [Glycine max] gi|356499622|ref|XP_003518636.1| PREDICTED: MATE efflux family protein DTX1-like isoform 2 [Glycine max] Back     alignment and taxonomy information
>gi|356567250|ref|XP_003551834.1| PREDICTED: MATE efflux family protein DTX1-like [Glycine max] Back     alignment and taxonomy information
>gi|359488145|ref|XP_002265933.2| PREDICTED: MATE efflux family protein 5-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|356573950|ref|XP_003555117.1| PREDICTED: MATE efflux family protein 8-like [Glycine max] Back     alignment and taxonomy information
>gi|359488147|ref|XP_003633708.1| PREDICTED: LOW QUALITY PROTEIN: MATE efflux family protein 5-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|296087229|emb|CBI33603.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|356515374|ref|XP_003526375.1| PREDICTED: MATE efflux family protein DTX1-like [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query399
TAIR|locus:2026311485 AT1G71140 "AT1G71140" [Arabido 0.992 0.816 0.537 6.2e-117
TAIR|locus:2050180476 AT2G04050 "AT2G04050" [Arabido 0.977 0.819 0.533 1.8e-110
TAIR|locus:2050185476 AT2G04080 "AT2G04080" [Arabido 0.974 0.817 0.521 4.8e-110
TAIR|locus:2050190476 DTX1 "AT2G04040" [Arabidopsis 0.977 0.819 0.515 3.4e-109
TAIR|locus:2033334482 AT1G66760 "AT1G66760" [Arabido 0.972 0.804 0.507 4.4e-107
TAIR|locus:2050230483 AT2G04100 "AT2G04100" [Arabido 0.962 0.795 0.526 4.4e-107
TAIR|locus:2037723487 AT1G15150 "AT1G15150" [Arabido 0.994 0.815 0.501 9.2e-107
TAIR|locus:2050225476 AT2G04070 "AT2G04070" [Arabido 0.974 0.817 0.519 1.5e-106
TAIR|locus:2033309485 AT1G66780 "AT1G66780" [Arabido 0.967 0.795 0.515 2.2e-105
TAIR|locus:2037858481 AT1G15170 "AT1G15170" [Arabido 0.962 0.798 0.507 1.6e-104
TAIR|locus:2026311 AT1G71140 "AT1G71140" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1152 (410.6 bits), Expect = 6.2e-117, P = 6.2e-117
 Identities = 213/396 (53%), Positives = 287/396 (72%)

Query:     1 MASALETLCGQAYGAEQFQKLGIYKHCSIISLIIVCFPISLLWIFTDKLLILVGQDPSIS 60
             +ASALETLCGQA GA+Q++KLG++ +  I+SL +VC P+SLLW +   +L L+GQD  ++
Sbjct:    84 LASALETLCGQANGAKQYEKLGVHTYTGIVSLFLVCIPLSLLWTYIGDILSLIGQDAMVA 143

Query:    61 RVAKKYAIFLIPNLFSYAVLQSFIRFFQVQSLILPMLYSSVLTLCFHIPLCWALVFKIKL 120
             + A K+A +LIP LF YA LQ  +RFFQ QSLILP++ SSV +LC HI LCW+LVFK  L
Sbjct:   144 QEAGKFATWLIPALFGYATLQPLVRFFQAQSLILPLVMSSVSSLCIHIVLCWSLVFKFGL 203

Query:   121 GSNGAALAVGLSYWFNVLLLGFYIKYSSECEKTRASFSIDVFSSIKEFIRFSVPSAVMVC 180
             GS GAA+A+G+SYW NV +LG Y+ +SS C K+RA+ S+ +F  + EF RF +PSA M+C
Sbjct:   204 GSLGAAIAIGVSYWLNVTVLGLYMTFSSSCSKSRATISMSLFEGMGEFFRFGIPSASMIC 263

Query:   181 FEWWSYEVLILLSGLLPNPKLEASVFSLCFTITYLHYFIPYGFGSTVSTRVSNELGAGNP 240
              EWWS+E L+LLSG+LPNPKLEASV S+C +     Y IP   G+  STRV+NELGAGNP
Sbjct:   264 LEWWSFEFLVLLSGILPNPKLEASVLSVCLSTQSSLYQIPESLGAAASTRVANELGAGNP 323

Query:   241 KAAKMAVCAIIILAAAEMVTVSIVLLFCRHILGYALSSSENIVHRLADMVPFICLSIIMD 300
             K A+MAV   +++   E + V  ++   R++ GY  SS   +V  +  M P + LS+I D
Sbjct:   324 KQARMAVYTAMVITGVESIMVGAIVFGARNVFGYLFSSETEVVDYVKSMAPLLSLSVIFD 383

Query:   301 SLQAVLSGVARGSGWQKIGAFVNLGAYYLVGIPIAAVLAFVFQLKGKGLLIGLATGSFVQ 360
             +L A LSGVARGSG Q IGA+VNL AYYL GIP A +LAF F+++G+GL IG+  GS VQ
Sbjct:   384 ALHAALSGVARGSGRQDIGAYVNLAAYYLFGIPTAILLAFGFKMRGRGLWIGITVGSCVQ 443

Query:   361 AALLALKIVFTDWGKQASKARERIFEGDSQQRQSQE 396
             A LL L ++ T+W KQA KARER+   + ++++S+E
Sbjct:   444 AVLLGLIVILTNWKKQARKARERVMGDEYEEKESEE 479
GO:0005215 "transporter activity" evidence=ISS
GO:0005886 "plasma membrane" evidence=ISM
GO:0006855 "drug transmembrane transport" evidence=IEA
GO:0015238 "drug transmembrane transporter activity" evidence=IEA
GO:0015297 "antiporter activity" evidence=IEA;ISS
GO:0016020 "membrane" evidence=IEA;ISS
GO:0055085 "transmembrane transport" evidence=IEA
GO:0005774 "vacuolar membrane" evidence=IDA
TAIR|locus:2050180 AT2G04050 "AT2G04050" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2050185 AT2G04080 "AT2G04080" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2050190 DTX1 "AT2G04040" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2033334 AT1G66760 "AT1G66760" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2050230 AT2G04100 "AT2G04100" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2037723 AT1G15150 "AT1G15150" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2050225 AT2G04070 "AT2G04070" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2033309 AT1G66780 "AT1G66780" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2037858 AT1G15170 "AT1G15170" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q10085YAO6_SCHPONo assigned EC number0.33580.94980.8329yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
fgenesh4_pm.C_LG_IV000232
hypothetical protein (475 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query399
cd13132436 cd13132, MATE_eukaryotic, Eukaryotic members of th 1e-145
TIGR00797342 TIGR00797, matE, putative efflux protein, MATE fam 2e-47
COG0534455 COG0534, NorM, Na+-driven multidrug efflux pump [D 1e-42
cd13131435 cd13131, MATE_NorM_like, Subfamily of the multidru 2e-41
cd13137432 cd13137, MATE_NorM_like, Subfamily of the multidru 9e-29
cd12082420 cd12082, MATE_like, Multidrug and toxic compound e 4e-23
cd13133438 cd13133, MATE_like_7, Uncharacterized subfamily of 7e-23
pfam01554161 pfam01554, MatE, MatE 9e-22
PRK01766456 PRK01766, PRK01766, multidrug efflux protein; Revi 7e-20
cd13138431 cd13138, MATE_yoeA_like, Subfamily of the multidru 3e-17
pfam01554161 pfam01554, MatE, MatE 9e-15
cd13142444 cd13142, MATE_like_12, Uncharacterized subfamily o 1e-14
cd13143426 cd13143, MATE_MepA_like, Subfamily of the multidru 4e-13
cd13135429 cd13135, MATE_like_9, Uncharacterized subfamily of 1e-12
cd13134438 cd13134, MATE_like_8, Uncharacterized subfamily of 3e-12
cd13146433 cd13146, MATE_like_6, Uncharacterized subfamily of 1e-11
cd13139448 cd13139, MATE_like_14, Uncharacterized subfamily o 7e-08
cd12082420 cd12082, MATE_like, Multidrug and toxic compound e 2e-07
PRK00187464 PRK00187, PRK00187, multidrug efflux protein NorA; 2e-06
cd13149 434 cd13149, MATE_like_2, Uncharacterized subfamily of 8e-04
cd13140435 cd13140, MATE_like_1, Uncharacterized subfamily of 0.002
cd13136424 cd13136, MATE_DinF_like, DinF and similar proteins 0.004
>gnl|CDD|240537 cd13132, MATE_eukaryotic, Eukaryotic members of the multidrug and toxic compound extrusion (MATE) family Back     alignment and domain information 
 Score =  419 bits (1080), Expect = e-145
 Identities = 178/379 (46%), Positives = 255/379 (67%), Gaps = 1/379 (0%)

Query: 1   MASALETLCGQAYGAEQFQKLGIYKHCSIISLIIVCFPISLLWIFTDKLLILVGQDPSIS 60
           +ASAL+TLCGQA+GA+ ++ +G+Y   +++ L++ C PISLLW+ T+ +L+L+GQDP I+
Sbjct: 59  LASALDTLCGQAFGAKNYKLVGVYLQRALVILLLCCVPISLLWLNTEPILLLLGQDPEIA 118

Query: 61  RVAKKYAIFLIPNLFSYAVLQSFIRFFQVQSLILPMLYSSVLTLCFHIPLCWALVFKIKL 120
           R+A +Y  +LIP LF+YA+ +   R+ Q Q ++LP++Y S++ L  +I L + LVF + L
Sbjct: 119 RLAGEYLRWLIPGLFAYALFEPLKRYLQAQGIVLPLVYISLVALLLNILLNYLLVFVLGL 178

Query: 121 GSNGAALAVGLSYWFNVLLLGFYIKYSSECEKTRASFSIDVFSSIKEFIRFSVPSAVMVC 180
           G  GAALA  +SYW  V+LL  YI +S   + T   FS + F     F++ ++PSA+M+C
Sbjct: 179 GFIGAALATSISYWLIVVLLLLYIFFSKGHKATWGGFSREAFRGWGPFLKLAIPSALMLC 238

Query: 181 FEWWSYEVLILLSGLLPNPKLEASVFSLCFTITYLHYFIPYGFGSTVSTRVSNELGAGNP 240
            EWW++E+L+LL+GLLP   +  +  S+C T T L Y IP G     S RV NELGAGNP
Sbjct: 239 LEWWAFEILVLLAGLLP-GTVALAAQSICLTTTSLLYMIPLGISIAASVRVGNELGAGNP 297

Query: 241 KAAKMAVCAIIILAAAEMVTVSIVLLFCRHILGYALSSSENIVHRLADMVPFICLSIIMD 300
           K AK+A    +IL+    V V+I+LL  R +  Y  +S E ++  +AD++P + L  I D
Sbjct: 298 KRAKLAAIVALILSLVIGVVVAILLLVLRDVWAYLFTSDEEVIALVADLLPILALFQIFD 357

Query: 301 SLQAVLSGVARGSGWQKIGAFVNLGAYYLVGIPIAAVLAFVFQLKGKGLLIGLATGSFVQ 360
            LQAVLSGV RG G QK+GA+VNL AYYL+G+P+  +LAFV  L  KGL IGL  G  +Q
Sbjct: 358 GLQAVLSGVLRGCGRQKLGAYVNLVAYYLIGLPVGLLLAFVLGLGLKGLWIGLIAGLILQ 417

Query: 361 AALLALKIVFTDWGKQASK 379
           A +L L I+ TDW K+A K
Sbjct: 418 AVILLLIILRTDWDKEAEK 436

The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. MATE has also been identified as a large multigene family in plants, where the proteins are linked to disease resistance. A number of family members are involved in the synthesis of peptidoglycan components in bacteria. This subfamily, which is restricted to eukaryotes, contains vertebrate solute transporters responsible for secretion of cationic drugs across the brush border membranes, yeast proteins located in the vacuole membrane, and plant proteins involved in disease resistance and iron homeostatis under osmotic stress. Length = 436
>gnl|CDD|233130 TIGR00797, matE, putative efflux protein, MATE family Back     alignment and domain information
>gnl|CDD|223608 COG0534, NorM, Na+-driven multidrug efflux pump [Defense mechanisms] Back     alignment and domain information
>gnl|CDD|240536 cd13131, MATE_NorM_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Vibrio cholerae NorM Back     alignment and domain information
>gnl|CDD|240542 cd13137, MATE_NorM_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Thermotoga marina NorM Back     alignment and domain information
>gnl|CDD|240527 cd12082, MATE_like, Multidrug and toxic compound extrusion family and similar proteins Back     alignment and domain information
>gnl|CDD|240538 cd13133, MATE_like_7, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|190033 pfam01554, MatE, MatE Back     alignment and domain information
>gnl|CDD|234981 PRK01766, PRK01766, multidrug efflux protein; Reviewed Back     alignment and domain information
>gnl|CDD|240543 cd13138, MATE_yoeA_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Bacillus subtilis yoeA Back     alignment and domain information
>gnl|CDD|190033 pfam01554, MatE, MatE Back     alignment and domain information
>gnl|CDD|240547 cd13142, MATE_like_12, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|240548 cd13143, MATE_MepA_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Streptococcus aureus MepA Back     alignment and domain information
>gnl|CDD|240540 cd13135, MATE_like_9, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|240539 cd13134, MATE_like_8, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|240551 cd13146, MATE_like_6, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|240544 cd13139, MATE_like_14, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|240527 cd12082, MATE_like, Multidrug and toxic compound extrusion family and similar proteins Back     alignment and domain information
>gnl|CDD|166843 PRK00187, PRK00187, multidrug efflux protein NorA; Provisional Back     alignment and domain information
>gnl|CDD|240554 cd13149, MATE_like_2, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|240545 cd13140, MATE_like_1, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|240541 cd13136, MATE_DinF_like, DinF and similar proteins, a subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 399
COG0534455 NorM Na+-driven multidrug efflux pump [Defense mec 100.0
PRK10189478 MATE family multidrug exporter; Provisional 100.0
PRK00187464 multidrug efflux protein NorA; Provisional 100.0
PRK01766456 multidrug efflux protein; Reviewed 100.0
PRK09575453 vmrA multidrug efflux pump VmrA; Reviewed 100.0
PRK10367441 DNA-damage-inducible SOS response protein; Provisi 100.0
TIGR01695502 mviN integral membrane protein MviN. This model re 100.0
TIGR02900488 spore_V_B stage V sporulation protein B. SpoVB is 100.0
TIGR00797342 matE putative efflux protein, MATE family. The MAT 100.0
PRK15099416 O-antigen translocase; Provisional 100.0
KOG1347473 consensus Uncharacterized membrane protein, predic 100.0
PF03023451 MVIN: MviN-like protein; InterPro: IPR004268 This 100.0
COG0728518 MviN Uncharacterized membrane protein, putative vi 99.97
COG0534 455 NorM Na+-driven multidrug efflux pump [Defense mec 99.95
PRK10459492 colanic acid exporter; Provisional 99.95
PRK00187 464 multidrug efflux protein NorA; Provisional 99.94
PRK10367 441 DNA-damage-inducible SOS response protein; Provisi 99.94
PRK10189 478 MATE family multidrug exporter; Provisional 99.93
PRK09575 453 vmrA multidrug efflux pump VmrA; Reviewed 99.93
PRK01766 456 multidrug efflux protein; Reviewed 99.92
COG2244480 RfbX Membrane protein involved in the export of O- 99.92
TIGR00797 342 matE putative efflux protein, MATE family. The MAT 99.85
PF01554162 MatE: MatE; InterPro: IPR002528 Characterised memb 99.83
KOG1347 473 consensus Uncharacterized membrane protein, predic 99.57
PF01943273 Polysacc_synt: Polysaccharide biosynthesis protein 99.54
TIGR02900 488 spore_V_B stage V sporulation protein B. SpoVB is 99.54
TIGR01695 502 mviN integral membrane protein MviN. This model re 99.43
PF13440251 Polysacc_synt_3: Polysaccharide biosynthesis prote 99.36
PF03023451 MVIN: MviN-like protein; InterPro: IPR004268 This 99.35
PRK15099 416 O-antigen translocase; Provisional 99.34
PF01554162 MatE: MatE; InterPro: IPR002528 Characterised memb 99.31
COG0728518 MviN Uncharacterized membrane protein, putative vi 99.31
PF04506549 Rft-1: Rft protein; InterPro: IPR007594 Asymmetric 98.96
PRK10459492 colanic acid exporter; Provisional 98.8
KOG2864530 consensus Nuclear division RFT1 protein [Cell cycl 98.8
COG2244480 RfbX Membrane protein involved in the export of O- 98.65
PF14667146 Polysacc_synt_C: Polysaccharide biosynthesis C-ter 98.61
PF14667146 Polysacc_synt_C: Polysaccharide biosynthesis C-ter 98.32
PF01943273 Polysacc_synt: Polysaccharide biosynthesis protein 98.27
PF07260345 ANKH: Progressive ankylosis protein (ANKH); InterP 98.11
PF13440251 Polysacc_synt_3: Polysaccharide biosynthesis prote 98.09
PF07260 345 ANKH: Progressive ankylosis protein (ANKH); InterP 97.93
PF04506549 Rft-1: Rft protein; InterPro: IPR007594 Asymmetric 97.14
COG4267467 Predicted membrane protein [Function unknown] 96.02
KOG2864530 consensus Nuclear division RFT1 protein [Cell cycl 95.99
TIGR00822265 EII-Sor PTS system, mannose/fructose/sorbose famil 91.94
COG4267 467 Predicted membrane protein [Function unknown] 80.88
>COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms] Back     alignment and domain information 
Probab=100.00  E-value=4.7e-53  Score=398.48  Aligned_cols=375  Identities=23%  Similarity=0.348  Sum_probs=356.2

Q ss_pred             ChhhhHHHHHhhhcccchhcHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhCCChHHHHHHHHHHHHHhhhHHHHHH
Q 015865            1 MASALETLCGQAYGAEQFQKLGIYKHCSIISLIIVCFPISLL-WIFTDKLLILVGQDPSISRVAKKYAIFLIPNLFSYAV   79 (399)
Q Consensus         1 i~~a~~~~is~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~-~~~~~~~~~~~~~~~~~~~~a~~yl~i~~~~~~~~~~   79 (399)
                      ++.|.++++||++|+||++++++..++++.++++++++.+++ +.+.++++.+++.++|+.+.+.+|+++..++.|+..+
T Consensus        72 l~~g~~~liaq~~Ga~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ll~~l~~~~~v~~~a~~Yl~i~~~~~~~~~~  151 (455)
T COG0534          72 LGTGTTVLVAQAIGAGDRKKAKRVLGQGLLLALLLGLLLAILLLFFAEPLLRLLGAPAEVLELAAEYLRIILLGAPFALL  151 (455)
T ss_pred             HHHhHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHhHHHHHHHHHHHHHHHHHHHHH
Confidence            368999999999999999999999999999999999888887 9999999999999899999999999999999999999


Q ss_pred             HHHHHHHHHHcCChhhHHHHHHHHHHHHHHHHHHHHhh-hc-CCcchhHHHHHHHHHHHHHHHHHHHhhccc-cccccCC
Q 015865           80 LQSFIRFFQVQSLILPMLYSSVLTLCFHIPLCWALVFK-IK-LGSNGAALAVGLSYWFNVLLLGFYIKYSSE-CEKTRAS  156 (399)
Q Consensus        80 ~~~~~~~l~~~~~~~~~~~~~i~~~~~~i~l~~~li~~-~~-~g~~g~a~a~~i~~~~~~~~~~~~~~~~~~-~~~~~~~  156 (399)
                      +..+++.+|+.||+|.+++.+++++++|+++|++|+++ ++ +|+.|+++||++++.+.++.+.++++++++ ......+
T Consensus       152 ~~~~~~~lr~~G~~~~~m~~~~~~~~lNivln~llI~g~~g~lGv~GAA~AT~ia~~~~~~~~~~~~~~~~~~~~~~~~~  231 (455)
T COG0534         152 SFVLSGILRGLGDTKTPMYILLLGNLLNIVLNYLLIFGLFGGLGVAGAALATVIARWIGALLLLIYLLRKKRLLSLFKKK  231 (455)
T ss_pred             HHHHHHHHHhcCCCchhHHHHHHHHHHHHHhhHHHHHhccccccchhHHHHHHHHHHHHHHHHHHHHHhcchhhhhhhhh
Confidence            99999999999999999999999999999999999999 57 999999999999999999999999998775 2223233


Q ss_pred             CcHHhHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHhccCCChhhhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhc
Q 015865          157 FSIDVFSSIKEFIRFSVPSAVMVCFEWWSYEVLILLSGLLPNPKLEASVFSLCFTITYLHYFIPYGFGSTVSTRVSNELG  236 (399)
Q Consensus       157 ~~~~~~~~~k~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~i~~~i~~~~~~~~~~~~~~~~~~~s~~~g  236 (399)
                      ..++|++.+|+++++|+|.++++..........+.+++++|  ++++|+|+++.++.++..++..|++++.++++++++|
T Consensus       232 ~~~~~~~~~~~i~~lG~p~~~~~~~~~~~~~~~~~~~~~~G--~~~lAa~~i~~~i~~~~~~~~~gi~~a~~~lvG~~~G  309 (455)
T COG0534         232 LLKPDRKLLKEILRLGLPIFLESLSESLGFLLLTLFVARLG--TVALAAYGIALRIASFIFMPPFGIAQAVTILVGQNLG  309 (455)
T ss_pred             ccCCCHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhcC--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            33567899999999999999999999999999999999999  8899999999999999999999999999999999999


Q ss_pred             CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCchHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccCcc
Q 015865          237 AGNPKAAKMAVCAIIILAAAEMVTVSIVLLFCRHILGYALSSSENIVHRLADMVPFICLSIIMDSLQAVLSGVARGSGWQ  316 (399)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~  316 (399)
                      +||+|++++..+.+..++..++...+++++++++++..+|++|+|+.+.+..++++.+...++++.+.+..+.+||.||+
T Consensus       310 a~~~~~a~~~~~~~~~~~~~~~~~~~~i~~~f~~~i~~lF~~~~~v~~~~~~~l~i~~~~~~~~~~~~v~~g~lrg~g~~  389 (455)
T COG0534         310 AGNYKRARRAARLALKLSLLIALLIALLLLLFREPIISLFTTDPEVIALAVILLLIAALFQPFDGIQFVLSGVLRGAGDA  389 (455)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             chhHHHHHHHHHHHhHHHHHHHHHHhcCCccchhHHHHHHHHHHHHHHHHHHHhCCHHHHHH
Q 015865          317 KIGAFVNLGAYYLVGIPIAAVLAFVFQLKGKGLLIGLATGSFVQAALLALKIVFTDWGKQAS  378 (399)
Q Consensus       317 ~~~~~~~~~~~~~~~i~~~~~l~~~~~~g~~G~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~  378 (399)
                      |.++..++++.|.+.+|..|++.+.+ +|..|+|++...++.+..+...++++|.+|+++..
T Consensus       390 ~~~~~~~~~~~~~~~lp~~~~l~~~~-~g~~Gvw~~~~~~~~~~~~~~~~~~~~~~~~~~~~  450 (455)
T COG0534         390 KIPFIISLLSYWGFRLPLAYLLGFFF-LGLAGVWIGFPLSLILRAILLLLRLRRGRWRRKAV  450 (455)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHhhhc-ccchHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Confidence            99999999999999999999998776 89999999999999999999999999998876654

>PRK10189 MATE family multidrug exporter; Provisional Back     alignment and domain information
>PRK00187 multidrug efflux protein NorA; Provisional Back     alignment and domain information
>PRK01766 multidrug efflux protein; Reviewed Back     alignment and domain information
>PRK09575 vmrA multidrug efflux pump VmrA; Reviewed Back     alignment and domain information
>PRK10367 DNA-damage-inducible SOS response protein; Provisional Back     alignment and domain information
>TIGR01695 mviN integral membrane protein MviN Back     alignment and domain information
>TIGR02900 spore_V_B stage V sporulation protein B Back     alignment and domain information
>TIGR00797 matE putative efflux protein, MATE family Back     alignment and domain information
>PRK15099 O-antigen translocase; Provisional Back     alignment and domain information
>KOG1347 consensus Uncharacterized membrane protein, predicted efflux pump [General function prediction only] Back     alignment and domain information
>PF03023 MVIN: MviN-like protein; InterPro: IPR004268 This entry represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions Back     alignment and domain information
>COG0728 MviN Uncharacterized membrane protein, putative virulence factor [General function prediction only] Back     alignment and domain information
>COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms] Back     alignment and domain information
>PRK10459 colanic acid exporter; Provisional Back     alignment and domain information
>PRK00187 multidrug efflux protein NorA; Provisional Back     alignment and domain information
>PRK10367 DNA-damage-inducible SOS response protein; Provisional Back     alignment and domain information
>PRK10189 MATE family multidrug exporter; Provisional Back     alignment and domain information
>PRK09575 vmrA multidrug efflux pump VmrA; Reviewed Back     alignment and domain information
>PRK01766 multidrug efflux protein; Reviewed Back     alignment and domain information
>COG2244 RfbX Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only] Back     alignment and domain information
>TIGR00797 matE putative efflux protein, MATE family Back     alignment and domain information
>PF01554 MatE: MatE; InterPro: IPR002528 Characterised members of the Multi Antimicrobial Extrusion (MATE) family function as drug/sodium antiporters Back     alignment and domain information
>KOG1347 consensus Uncharacterized membrane protein, predicted efflux pump [General function prediction only] Back     alignment and domain information
>PF01943 Polysacc_synt: Polysaccharide biosynthesis protein; InterPro: IPR002797 Members of this family are integral membrane proteins [], and many are implicated in the production of polysaccharide Back     alignment and domain information
>TIGR02900 spore_V_B stage V sporulation protein B Back     alignment and domain information
>TIGR01695 mviN integral membrane protein MviN Back     alignment and domain information
>PF13440 Polysacc_synt_3: Polysaccharide biosynthesis protein Back     alignment and domain information
>PF03023 MVIN: MviN-like protein; InterPro: IPR004268 This entry represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions Back     alignment and domain information
>PRK15099 O-antigen translocase; Provisional Back     alignment and domain information
>PF01554 MatE: MatE; InterPro: IPR002528 Characterised members of the Multi Antimicrobial Extrusion (MATE) family function as drug/sodium antiporters Back     alignment and domain information
>COG0728 MviN Uncharacterized membrane protein, putative virulence factor [General function prediction only] Back     alignment and domain information
>PF04506 Rft-1: Rft protein; InterPro: IPR007594 Asymmetric lipid distribution is a fundamental characteristic of biological lipid bilayers, one such axample is the translocation of the Man5GlcNAc2-PP-Dol intermediate from the cytosolic side of the ER membrane to the lumen before the completion of the biosynthesis of Glc3Man9GlcNAc2-PP-Dol [] Back     alignment and domain information
>PRK10459 colanic acid exporter; Provisional Back     alignment and domain information
>KOG2864 consensus Nuclear division RFT1 protein [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>COG2244 RfbX Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only] Back     alignment and domain information
>PF14667 Polysacc_synt_C: Polysaccharide biosynthesis C-terminal domain Back     alignment and domain information
>PF14667 Polysacc_synt_C: Polysaccharide biosynthesis C-terminal domain Back     alignment and domain information
>PF01943 Polysacc_synt: Polysaccharide biosynthesis protein; InterPro: IPR002797 Members of this family are integral membrane proteins [], and many are implicated in the production of polysaccharide Back     alignment and domain information
>PF07260 ANKH: Progressive ankylosis protein (ANKH); InterPro: IPR009887 This family consists of several progressive ankylosis protein (ANK or ANKH) sequences Back     alignment and domain information
>PF13440 Polysacc_synt_3: Polysaccharide biosynthesis protein Back     alignment and domain information
>PF07260 ANKH: Progressive ankylosis protein (ANKH); InterPro: IPR009887 This family consists of several progressive ankylosis protein (ANK or ANKH) sequences Back     alignment and domain information
>PF04506 Rft-1: Rft protein; InterPro: IPR007594 Asymmetric lipid distribution is a fundamental characteristic of biological lipid bilayers, one such axample is the translocation of the Man5GlcNAc2-PP-Dol intermediate from the cytosolic side of the ER membrane to the lumen before the completion of the biosynthesis of Glc3Man9GlcNAc2-PP-Dol [] Back     alignment and domain information
>COG4267 Predicted membrane protein [Function unknown] Back     alignment and domain information
>KOG2864 consensus Nuclear division RFT1 protein [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>TIGR00822 EII-Sor PTS system, mannose/fructose/sorbose family, IIC component Back     alignment and domain information
>COG4267 Predicted membrane protein [Function unknown] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query399
3mkt_A460 Structure Of A Cation-Bound Multidrug And Toxin Com 5e-15
>pdb|3MKT|A Chain A, Structure Of A Cation-Bound Multidrug And Toxin Compound Extrusion (Mate) Transporter Length = 460 Back     alignment and structure 
Iteration: 1

 Score = 79.0 bits (193), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 89/381 (23%), Positives = 162/381 (42%), Gaps = 23/381 (6%)
Query: 4   ALETLCGQAYGAEQFQKLGIYKHCSIISLIIVCFPISLLWIFTDKLLILVGQDPSISRVA 63
           AL  +  Q  GA +  K+    H  +I  ++V  PI  +   T  ++  +  + +++   
Sbjct: 70  ALVPVVAQLNGAGRQHKIPFEVHQGLILALLVSVPIIAVLFQTQFIIRFMDVEEAMATKT 129
Query: 64  KKY---AIFLIPNLFSYAVLQSFIRFFQVQSLILPMLYSSVLTLCFHIPLCWALVF---- 116
             Y    IF +P   +Y + Q+   F    SL  P +    + L  +IPL W  V+    
Sbjct: 130 VGYMHAVIFAVP---AYLLFQALRSFTDGMSLTKPAMVIGFIGLLLNIPLNWIFVYGKFG 186
Query: 117 KIKLGSNGAALAVGLSYWFNVLLLGFYIKYSSECEKTRA--SFSIDVFSSIKEFIRFSVP 174
             +LG  G  +A  + YW  +LLL FYI  S      +   +F       +    R   P
Sbjct: 187 APELGGVGCGVATAIVYWIMLLLLLFYIVTSKRLAHVKVFETFHKPQPKELIRLFRLGFP 246
Query: 175 SAVMVCFEWWSYEVLILLSGLLPNPKLEASVFSLCFTITYLHYFIPYGFGSTVSTRVSNE 234
            A  + FE   + V+ LL   L +  + A   +L F  + L +  P   G+ VS RV ++
Sbjct: 247 VAAALFFEVTLFAVVALLVAPLGSTVVAAHQVALNF--SSLVFMFPMSIGAAVSIRVGHK 304
Query: 235 LGAGNPKAAKMAVCAIIILAAAEMVTVSIVLLFCRHILGYALSSSENIVHRLADMVPFIC 294
           LG  + K A +A    ++   A     +++ +  R  +    + ++ +V     ++ F  
Sbjct: 305 LGEQDTKGAAIAANVGLMTGLATACITALLTVLFREQIALLYTENQVVVALAMQLLLFAA 364
Query: 295 LSIIMDSLQAVLSGVARGSGWQKIGAFVNLG--AYYLVGIPIAAVLAFVF-----QLKGK 347
           +   MD++Q V +G  R  G++ + A  +    +Y+++G+P   +L          L  K
Sbjct: 365 IYQCMDAVQVVAAGSLR--GYKDMTAIFHRTFISYWVLGLPTGYILGMTNWLTEQPLGAK 422
Query: 348 GLLIGLATGSFVQAALLALKI 368
           G  +G   G    A +L  ++
Sbjct: 423 GFWLGFIIGLSAAALMLGQRL 443

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query399
3mkt_A460 Multi antimicrobial extrusion protein (Na(+)/drug 4e-76
>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A Length = 460 Back     alignment and structure
 Score =  242 bits (619), Expect = 4e-76
 Identities = 84/377 (22%), Positives = 153/377 (40%), Gaps = 13/377 (3%)

Query: 1   MASALETLCGQAYGAEQFQKLGIYKHCSIISLIIVCFPISLLWIFTDKLLILVGQDPSIS 60
           +  AL  +  Q  GA +  K+    H  +I  ++V  PI  +   T  ++  +  + +++
Sbjct: 67  LLMALVPVVAQLNGAGRQHKIPFEVHQGLILALLVSVPIIAVLFQTQFIIRFMDVEEAMA 126

Query: 61  RVAKKYAIFLIPNLFSYAVLQSFIRFFQVQSLILPMLYSSVLTLCFHIPLCWALVFKI-- 118
                Y   +I  + +Y + Q+   F    SL  P +    + L  +IPL W  V+    
Sbjct: 127 TKTVGYMHAVIFAVPAYLLFQALRSFTDGMSLTKPAMVIGFIGLLLNIPLNWIFVYGKFG 186

Query: 119 --KLGSNGAALAVGLSYWFNVLLLGFYIKYSSECEKTR--ASFSIDVFSSIKEFIRFSVP 174
             +LG  G  +A  + YW  +LLL FYI  S      +   +F       +    R   P
Sbjct: 187 APELGGVGCGVATAIVYWIMLLLLLFYIVTSKRLAHVKVFETFHKPQPKELIRLFRLGFP 246

Query: 175 SAVMVCFEWWSYEVLILLSGLLPNPKLEASVFSLCFTITYLHYFIPYGFGSTVSTRVSNE 234
            A  + FE   + V+ LL   L +  + A    +    + L +  P   G+ VS RV ++
Sbjct: 247 VAAALFFEVTLFAVVALLVAPLGSTVVAA--HQVALNFSSLVFMFPMSIGAAVSIRVGHK 304

Query: 235 LGAGNPKAAKMAVCAIIILAAAEMVTVSIVLLFCRHILGYALSSSENIVHRLADMVPFIC 294
           LG  + K A +A    ++   A     +++ +  R  +    + ++ +V     ++ F  
Sbjct: 305 LGEQDTKGAAIAANVGLMTGLATACITALLTVLFREQIALLYTENQVVVALAMQLLLFAA 364

Query: 295 LSIIMDSLQAVLSGVARGSGWQKIGAFVNLGAYYLVGIPIAAVLAFV-----FQLKGKGL 349
           +   MD++Q V +G  RG             +Y+++G+P   +L          L  KG 
Sbjct: 365 IYQCMDAVQVVAAGSLRGYKDMTAIFHRTFISYWVLGLPTGYILGMTNWLTEQPLGAKGF 424

Query: 350 LIGLATGSFVQAALLAL 366
            +G   G    A +L  
Sbjct: 425 WLGFIIGLSAAALMLGQ 441

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query399
3mkt_A460 Multi antimicrobial extrusion protein (Na(+)/drug 100.0
3mkt_A 460 Multi antimicrobial extrusion protein (Na(+)/drug 99.85
>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A Back     alignment and structure
Probab=100.00  E-value=6.2e-45  Score=347.68  Aligned_cols=368  Identities=23%  Similarity=0.372  Sum_probs=339.8

Q ss_pred             hhhhHHHHHhhhcccchhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHhhhHHHHHHHH
Q 015865            2 ASALETLCGQAYGAEQFQKLGIYKHCSIISLIIVCFPISLLWIFTDKLLILVGQDPSISRVAKKYAIFLIPNLFSYAVLQ   81 (399)
Q Consensus         2 ~~a~~~~is~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~a~~yl~i~~~~~~~~~~~~   81 (399)
                      ++|..+.++|++|++|+++.++.+++++.+..++++++.+++.+.++++.+++.+++..+.+.+|++++.++.++..+..
T Consensus        68 ~~~~~~~is~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~  147 (460)
T 3mkt_A           68 LMALVPVVAQLNGAGRQHKIPFEVHQGLILALLVSVPIIAVLFQTQFIIRFMDVEEAMATKTVGYMHAVIFAVPAYLLFQ  147 (460)
T ss_dssp             HHHHGGGCTTTTSSSSTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCSSTTHHHHHHHHHHTTGGGHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            56889999999999999999999999999999999998777778888888888899999999999999999999999999


Q ss_pred             HHHHHHHHcCChhhHHHHHHHHHHHHHHHHHHHHhh----hcCCcchhHHHHHHHHHHHHHHHHHHHhhccccccc--cC
Q 015865           82 SFIRFFQVQSLILPMLYSSVLTLCFHIPLCWALVFK----IKLGSNGAALAVGLSYWFNVLLLGFYIKYSSECEKT--RA  155 (399)
Q Consensus        82 ~~~~~l~~~~~~~~~~~~~i~~~~~~i~l~~~li~~----~~~g~~g~a~a~~i~~~~~~~~~~~~~~~~~~~~~~--~~  155 (399)
                      .+++.+|+.||++.+++.++++.++|+++++++++.    +++|+.|+++|+.+++.+..++..++.+++++.++.  ++
T Consensus       148 ~~~~~l~~~~~~~~~~~~~~~~~~~~i~l~~~li~~~~~~p~~g~~g~a~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~  227 (460)
T 3mkt_A          148 ALRSFTDGMSLTKPAMVIGFIGLLLNIPLNWIFVYGKFGAPELGGVGCGVATAIVYWIMLLLLLFYIVTSKRLAHVKVFE  227 (460)
T ss_dssp             HHTTTTCTTSCCTTTHHHHHHHHHHHHHHHHHHHSCCTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCCCCSC
T ss_pred             HHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHcCCCCCcccchhhHHHHHHHHHHHHHHHHHHHHHhCcchhhhhhhh
Confidence            999999999999999999999999999999999985    379999999999999999999998888766543221  12


Q ss_pred             CCcHHhHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHhccCCChhhhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhh
Q 015865          156 SFSIDVFSSIKEFIRFSVPSAVMVCFEWWSYEVLILLSGLLPNPKLEASVFSLCFTITYLHYFIPYGFGSTVSTRVSNEL  235 (399)
Q Consensus       156 ~~~~~~~~~~k~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~i~~~i~~~~~~~~~~~~~~~~~~~s~~~  235 (399)
                      ++.+.+++..|+++++++|..++.....+...+++.+++++|  ++++|+|++++++.++...+..+++++..|.+++++
T Consensus       228 ~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~g--~~~va~~~i~~~i~~~~~~~~~~~~~a~~p~i~~~~  305 (460)
T 3mkt_A          228 TFHKPQPKELIRLFRLGFPVAAALFFEVTLFAVVALLVAPLG--STVVAAHQVALNFSSLVFMFPMSIGAAVSIRVGHKL  305 (460)
T ss_dssp             CCCSSTTSSTTTSHHHHHHHHHHHHHHHHHHHHHHHHTCTTS--SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccccCHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcC--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333456788999999999999999999999999999999997  789999999999999999999999999999999999


Q ss_pred             cCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCchHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccCc
Q 015865          236 GAGNPKAAKMAVCAIIILAAAEMVTVSIVLLFCRHILGYALSSSENIVHRLADMVPFICLSIIMDSLQAVLSGVARGSGW  315 (399)
Q Consensus       236 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~  315 (399)
                      |++|.++.++..+++.++...++++.++.++++++++..+|.+|+++.+.+..++++++++.++.+++.+..+++++.||
T Consensus       306 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~  385 (460)
T 3mkt_A          306 GEQDTKGAAIAANVGLMTGLATACITALLTVLFREQIALLYTENQVVVALAMQLLLFAAIYQCMDAVQVVAAGSLRGYKD  385 (460)
T ss_dssp             HSSCCCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGST
T ss_pred             cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence            99999999999999999999999999999999999999999998888999999999999999999999999999999999


Q ss_pred             cchhHHHHHHHHHHHhHHHHHHHHHH----hc-CCccchhHHHHHHHHHHHHHHHHHHHhC
Q 015865          316 QKIGAFVNLGAYYLVGIPIAAVLAFV----FQ-LKGKGLLIGLATGSFVQAALLALKIVFT  371 (399)
Q Consensus       316 ~~~~~~~~~~~~~~~~i~~~~~l~~~----~~-~g~~G~~~a~~~~~~~~~~~~~~~~~~~  371 (399)
                      +|.++..++++.|++++|+++++.+.    ++ +|..|+|+|+.+++.+..++..++++|.
T Consensus       386 ~~~~~~~~~~~~~~~~i~l~~~l~~~~~~~~~~~G~~G~~~a~~~~~~~~~~~~~~~~~~~  446 (460)
T 3mkt_A          386 MTAIFHRTFISYWVLGLPTGYILGMTNWLTEQPLGAKGFWLGFIIGLSAAALMLGQRLYWL  446 (460)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSSHHHHHHHHHHHHHHHHHHHHHSSSSSS
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccCchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999889999999999876    56 9999999999999999988877666554
>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00