Citrus Sinensis ID: 015869

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------40
Protein Sequence
MPSQQGNINNDYLETLVASARPFLRGELEAIDKNLPSLIAVLRSVGAGECWHKHGSFLEHLVDIYRILKIWKAPDCVCLCGLFHSAYSNSYVNLAIFDPNTGRDVVRGHVGDAAEKLIHLFCIVPRQPLIHDDLLFEYSDQELVEHLKASDVSLINAKEKGLFNAEEAWRKKINELLPADGLTVKHIKTGEDVGVSRRVVATFVMLTIADFSDQLFGFQDFLFNNSDGKLEFAGNSFSALWPGDGKPGLWMNSLSRMGAIYSLIAREEEIFIQERKTSAAAVGVGVDKERDEDIELPVPPVFENCTRILDAKEQIEARDLYWEAVCGNSDGSKEKLEKAEELLLRCIEKNPFVGEPHVVLGQIYLAKGEFEEAEREAGKGLMLLLEWGSPWDKRMSWEG
Secondary Structure (PSIPRED)
cccccccccccHHHHHHHHHHHcHHHHHHHcccccHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHcccHHHHHHHccHHcccccccccccccccccHHHHHHHHcHHHHHHHHHHHccccccccccccccccccHHHHHHHHHccHHHHHHHHcccccccHHHHHHHHccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHccccccHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHcccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHccccccHcccccHHHHHHHHHHHHHHccccHHHHHHccEEEEEcccccccEEcccccHHHHHHHHHcHHHHHHHHHHHccccccHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHcccccccEEEEEEcccccEEccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccEEcccccHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHccccccccccccccccccccccHccccccccHHHHHHHHHHHHHHHHccccccHcHHHHHHHHHHHHHHHccccccHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcccccccEcccc
Coil and Loop (DISEMBL)
mpsqqgninndYLETLVASARPFLRGELEAIDKNLPSLIAVLRSVgagecwhkhgSFLEHLVDIYRILKiwkapdcvclcglfhsaysnsyvnlaifdpntgrdvvrghVGDAAEKLIHLFCivprqplihddllfeySDQELVEHLKASDVSLINAKEKGLFNAEEAWRKKINEllpadgltvkhiktgedvgvSRRVVATFVMLTIAdfsdqlfgfqdflfnnsdgklefagnsfsalwpgdgkpglwmNSLSRMGAIYSLIAREEEIFIQERKtsaaavgvgvdkerdedielpvppvfencTRILDAKEQIEARDLYWEavcgnsdgskEKLEKAEELLLRCIeknpfvgephVVLGQIYLAKGEFEEAEREAGKGLMLLLEwgspwdkrmsweg
Flexible Loop (DISEMBL)
mpsqqgninndYLETLVASARPFLRGELEAIDKNLPSLIAVLRSVGAGECWHKHGSFLEHLVDIYRILKIWKAPDCVCLCGLFHSAYSNSYVNLAIFDPNTGRDVVRGHVGDAAEKLIHLFCIVPRQPLIHDDLLFEYSDQELVEHLKASDVSLINAKEKGLFNAEEAWRKKINEllpadgltvkhiktgedvgvsRRVVATFVMLTIADFSDQLFGFQDFLFNNSDGKLEFAGNSFSALWPGDGKPGLWMNSLSRMGAIYSLIAREEEIFIQERKTSAAAVGVGVdkerdedielpvppvfenctRILDAKEQIEARDLYWEAVCGNSDGSKEKLEKAEELLLRCIEKNPFVGEPHVVLGQIYLAKGEFEEAEREAGKGLMLllewgspwdkrmsweg
Low Complexity Region (SEG)
MPSQQGNINNDYLETLVASARPFLRGELEAIDKNLPSLIAVLRSVGAGECWHKHGSFLEHLVDIYRILKIWKAPDCVCLCGLFHSAYSNSYVNLAIFDPNTGRDVVRGHVGDAAEKLIHLFCIVPRQPLIHDDLLFEYSDQELVEHLKASDVSLINAKEKGLFNAEEAWRKKINELLPADGLTVKHIKTGEDVGVSRRVVATFVMLTIADFSDQLFGFQDFLFNNSDGKLEFAGNSFSALWPGDGKPGLWMNSLSRMGAIYSLIAREEEIFIQERKTSAAAVGVGVDKERDEDIELPVPPVFENCTRILDAKEQIEARDLYWEAVCGNSDGSkeklekaeelllRCIEKNPFVGEPHVVLGQIYLAKGEFEEAEREAGKGLMLLLEWGSPWDKRMSWEG
Disordered region (IsUnstruct)
*********NDYLETLVASARPFLRGELEAIDKNLPSLIAVLRSVGAGECWHKHGSFLEHLVDIYRILKIWKAPDCVCLCGLFHSAYSNSYVNLAIFDPNTGRDVVRGHVGDAAEKLIHLFCIVPRQPLIHDDLLFEYSDQELVEHLKASDVSLINAKEKGLFNAEEAWRKKINELLPADGLTVKHIKTGEDVGVSRRVVATFVMLTIADFSDQLFGFQDFLFNNSDGKLEFAGNSFSALWPGDGKPGLWMNSLSRMGAIYSLIAREEEIFIQERKTSAAAVGVGVDKERDEDIELPVPPVFENCTRILDAKEQIEARDLYWEAVCGN**********AEELLLRCIEKNPFVGEPHVVLGQIYLAKGEFEEAEREAGKGLMLLLEWGSPW********
Disordered Region (DISOPRED)
***************LVASARPFLRGELEAIDKNLPSLIAVLRSVGAGECWHKHGSFLEHLVDIYRILKIWKAPDCVCLCGLFHSAYSNSYVNLAIFDPNTGRDVVRGHVGDAAEKLIHLFCIVPRQPLIHDDLLFEYSDQELVEHLKASDVSLINA**********AWRKKINELLPADGLTVKHIKTGEDVGVSRRVVATFVMLTIADFSDQLFGFQDFLFNNSDGKLEFAGNSFSALWPGDGKPGLWMNSLSRMGAIYSLIAREEEIF******************RDEDIELPVPPVFENCTRILDAKEQIEARDLYWEAVCGNSDGSKEKLEKAEELLLRCIEKNPFVGEPHVVLGQIYLAKGEFEEAEREAGKGLMLLLEWGSPWDKRMSWE*
Disordered Region (DISEMBL)
MPSQQGNINNDYLETLVASARPFLRGELEAIDKNLPSLIAVLRSVGAGECWHKHGSFLEHLVDIYRILKIWKAPDCVCLCGLFHSAYSNSYVNLAIFDPNTGRDVVRGHVGDAAEKLIHLFCIVPRQPLIHDDLLFEYSDQELVEHLKASDVSLINAKEKGLFNAEEAWRKKINELLPADGLTVKHIKTGEDVGVSRRVVATFVMLTIADFSDQLFGFQDFLFNNSDGKLEFAGNSFSALWPGDGKPGLWMNSLSRMGAIYSLIAREEEIFIQERKTSAAAVGVGVDKERDEDIELPVPPVFENCTRILDAKEQIEARDLYWEAVCGNSDGSKEKLEKAEELLLRCIEKNPFVGEPHVVLGQIYLAKGEFEEAEREAGKGLMLLLEWGSPWDKRMSWEG
Disordered Region (DISPRO)
********NNDYLETLVASARPFLRGELEAIDKNLPSLIAVLRSVGAGECWHKHGSFLEHLVDIYRILKIWKAPDCVCLCGLFHSAYSNSYVNLAIFDPNTGRDVVRGHVGDAAEKLIHLFCIVPRQPLIHDDLLFEYSDQELVEHLKASDVSLINAKEKGLFNAEEAWRKKINELLPADGLTVKHIKTGEDVGVSRRVVATFVMLTIADFSDQLFGFQDFLFNNSDGKLEFAGNSFSALWPGDGKPGLWMNSLSRMGAIYSLIAREEEIFIQERKTSAA********ERDEDIELPVPPVFENCTRILDAKEQIEARDLYWEAVCGNSDGSKEKLEKAEELLLRCIEKNPFVGEPHVVLGQIYLAKGEFEEAEREAGKGLMLLLEWGSPWDKRMS***
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MPSQQGNINNDYLETLVASARPFLRGELEAIDKNLPSLIAVLRSVGAGECWHKHGSFLEHLVDIYRILKIWKAPDCVCLCGLFHSAYSNSYVNLAIFDPNTGRDVVRGHVGDAAEKLIHLFCIVPRQPLIHDDLLFEYSDQELVEHLKASDVSLINAKEKGLFNAEEAWRKKINELLPADGLTVKHIKTGEDVGVSRRVVATFVMLTIADFSDQLFGFQDFLFNNSDGKLEFAGNSFSALWPGDGKPGLWMNSLSRMGAIYSLIAREEEIFIQERKTSAAAVGVGVDKERDEDIELPVPPVFENCTRILDAKEQIEARDLYWEAVCGNSDGSKEKLEKAEELLLRCIEKNPFVGEPHVVLGQIYLAKGEFEEAEREAGKGLMLLLEWGSPWDKRMSWEG
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	399
255544149	424	conserved hypothetical protein [Ricinus	0.984	0.926	0.769	1e-177
224095202	430	predicted protein [Populus trichocarpa]	0.962	0.893	0.789	1e-175
15231007	425	uncharacterized protein [Arabidopsis tha	0.959	0.901	0.744	1e-166
11994774	450	unnamed protein product [Arabidopsis tha	0.959	0.851	0.744	1e-166
110743422	412	hypothetical protein [Arabidopsis thalia	0.947	0.917	0.753	1e-166
297830676	425	binding protein [Arabidopsis lyrata subs	0.959	0.901	0.744	1e-165
225463770	426	PREDICTED: uncharacterized protein LOC10	0.957	0.896	0.762	1e-162
225463772	426	PREDICTED: uncharacterized protein LOC10	0.957	0.896	0.757	1e-161
449464960	423	PREDICTED: uncharacterized protein LOC10	0.944	0.891	0.720	1e-161
388504458	428	unknown [Medicago truncatula]	0.962	0.897	0.697	1e-160

>gi|255544149|ref|XP_002513137.1| conserved hypothetical protein [Ricinus communis] gi|223548148|gb|EEF49640.1| conserved hypothetical protein [Ricinus communis]

 Score =  627 bits (1616), Expect = e-177,   Method: Compositional matrix adjust.
 Identities = 307/399 (76%), Positives = 350/399 (87%), Gaps = 6/399 (1%)

Query: 1   MPSQQGNINNDYLETLVASARPFLRGELEAIDKNLPSLIAVLRSVGAGECWHKHGSFLEH 60
           MPS      ++YL+TL+AS RPFLRGELE++DKNLP+LI+VLRSVGAGECWHKHGSFL+H
Sbjct: 1   MPSSLHQETSNYLQTLLASTRPFLRGELESVDKNLPALISVLRSVGAGECWHKHGSFLDH 60

Query: 61  LVDIYRILKIWKAPDCVCLCGLFHSAYSNSYVNLAIFDPNTGRDVVRGHVGDAAEKLIHL 120
           LVDIYRILKIW A D VCLCGLFHSAYSNSYVNLAIFDPNTGRDVVRGHVG AAE+LIHL
Sbjct: 61  LVDIYRILKIWNASDSVCLCGLFHSAYSNSYVNLAIFDPNTGRDVVRGHVGPAAERLIHL 120

Query: 121 FCIVPRQPLIHDDLLFEYSDQELVEHLKASDVSLINAKEKGLFNAEEAWRKKINELLPAD 180
           FCIVPRQPLIHDDLLF YSD ELV+HL  S++SL NAKEKG+F+AE++WRKKIN LLPA 
Sbjct: 121 FCIVPRQPLIHDDLLFNYSDSELVQHLLLSEISLKNAKEKGVFDAEDSWRKKINSLLPAA 180

Query: 181 GLTVKHIKTGEDVGVSRRVVATFVMLTIADFSDQLFGFQDFLFNNSDGKLEFAGNSFSAL 240
           G+TVK IKTGEDV V+RR+VA FVM+T+ADFSDQLF FQD LF+NSDG+LEF+GN+ ++L
Sbjct: 181 GITVKRIKTGEDVLVTRRIVAVFVMMTMADFSDQLFSFQDLLFDNSDGRLEFSGNNLASL 240

Query: 241 WPGDGKPGLWMNSLSRMGAIYSLIAREEEIFIQERKTSAAAVGVGVDKERDEDIELPVPP 300
           WPGDGKPGLW+NS+SRMGAIY+LI REEEIF++ER     A G+ VD+ERDEDIEL VPP
Sbjct: 241 WPGDGKPGLWINSISRMGAIYTLIRREEEIFVEER---IRAGGIEVDEERDEDIELVVPP 297

Query: 301 VFENCTRILDAKEQIEARDLYWEAVCGNSDGSKEKLEKAEELLLRCIEKNPFVGEPHVVL 360
           VF+ CTRILDA++QIEARDLYWEAVC   D SK  L+K EELLL CIEKNP+VGEPHVVL
Sbjct: 298 VFDKCTRILDARQQIEARDLYWEAVC---DLSKRGLDKVEELLLSCIEKNPYVGEPHVVL 354

Query: 361 GQIYLAKGEFEEAEREAGKGLMLLLEWGSPWDKRMSWEG 399
            Q+YL K  FEEAEREA KG+ L+LEWGSPWDKR SWEG
Sbjct: 355 SQVYLTKDRFEEAEREAEKGVTLMLEWGSPWDKRTSWEG 393

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224095202|ref|XP_002310360.1| predicted protein [Populus trichocarpa] gi|222853263|gb|EEE90810.1| predicted protein [Populus trichocarpa]

 Score =  619 bits (1597), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 308/390 (78%), Positives = 347/390 (88%), Gaps = 6/390 (1%)

Query: 10  NDYLETLVASARPFLRGELEAIDKNLPSLIAVLRSVGAGECWHKHGSFLEHLVDIYRILK 69
            +YL+TL+ASARPFLRGELE+IDKNLPSLI+VLRSVGAGECWHKHGSFL+HLV+IYRILK
Sbjct: 16  TNYLQTLLASARPFLRGELESIDKNLPSLISVLRSVGAGECWHKHGSFLDHLVEIYRILK 75

Query: 70  IWKAPDCVCLCGLFHSAYSNSYVNLAIFDPNTGRDVVRGHVGDAAEKLIHLFCIVPRQPL 129
           IWKAPD VCLCGLFHSAYSNSYVNLAIFDPNTGRDVVR HVG+AAE+LIHLFCIVPRQ L
Sbjct: 76  IWKAPDSVCLCGLFHSAYSNSYVNLAIFDPNTGRDVVRNHVGEAAERLIHLFCIVPRQSL 135

Query: 130 IHDDLLFEYSDQELVEHLKASDVSLINAKEKGLFNAEEAWRKKINELLPADGLTVKHIKT 189
           IHDDLLF+YSD ELVEHLKAS++SL NA EKGLFN EE+WRKK+  LLPA G+TVKHIK+
Sbjct: 136 IHDDLLFKYSDIELVEHLKASELSLRNAGEKGLFNGEESWRKKLASLLPASGITVKHIKS 195

Query: 190 GEDVGVSRRVVATFVMLTIADFSDQLFGFQDFLFNNSDGKLEFAGNSFSALWPGDGKPGL 249
           GEDV V+RR+V  F+++T+ADFSDQLFGFQD LF N DG+LEF GN+F ALWPGDGKPGL
Sbjct: 196 GEDVLVTRRMVGVFLLMTMADFSDQLFGFQDLLFENFDGRLEFLGNNFGALWPGDGKPGL 255

Query: 250 WMNSLSRMGAIYSLIAREEEIFIQERKTSAAAVGVGVDKERDEDIELPVPPVFENCTRIL 309
           W+NS+SRMGAIYSLI REEEIFI+ERK +    G  VD+ERDEDIEL + PVFENCT++L
Sbjct: 256 WINSISRMGAIYSLIVREEEIFIEERKRAG---GFEVDRERDEDIELVLAPVFENCTQVL 312

Query: 310 DAKEQIEARDLYWEAVCGNSDGSKEKLEKAEELLLRCIEKNPFVGEPHVVLGQIYLAKGE 369
           DA+EQ+ ARDLYWEAVC   D SK  LE+AEELL+  IEKNPFVGEPHVVLGQ YL KG 
Sbjct: 313 DAREQVVARDLYWEAVC---DTSKGGLERAEELLVSSIEKNPFVGEPHVVLGQFYLTKGR 369

Query: 370 FEEAEREAGKGLMLLLEWGSPWDKRMSWEG 399
           FEEAE+EA +G+ LLLEWGSPWDKRMSWEG
Sbjct: 370 FEEAEKEAERGVTLLLEWGSPWDKRMSWEG 399

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15231007|ref|NP_188633.1| uncharacterized protein [Arabidopsis thaliana] gi|63003792|gb|AAY25425.1| At3g19990 [Arabidopsis thaliana] gi|111074436|gb|ABH04591.1| At3g19990 [Arabidopsis thaliana] gi|332642795|gb|AEE76316.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  592 bits (1525), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 288/387 (74%), Positives = 334/387 (86%), Gaps = 4/387 (1%)

Query: 14  ETLVASARPFLRGELEAIDKNLPSLIAVLRSVGAGECWHKHGSFLEHLVDIYRILKIWKA 73
           + ++ SARPFLRGELE ID  LPSLIAVL+SVGAGECWHKHGSFL+HL+DIY+ILK+WKA
Sbjct: 11  DAVLESARPFLRGELEKIDPKLPSLIAVLKSVGAGECWHKHGSFLDHLIDIYKILKLWKA 70

Query: 74  PDCVCLCGLFHSAYSNSYVNLAIFDPNTGRDVVRGHVGDAAEKLIHLFCIVPRQPLIHDD 133
           P+ VCLCGLFHSAYSNSYVNLAIFDP+TGRDVVR HVG+AAE LIHLFC+VPRQ LIHD+
Sbjct: 71  PESVCLCGLFHSAYSNSYVNLAIFDPSTGRDVVRDHVGEAAESLIHLFCVVPRQTLIHDE 130

Query: 134 LLFEYSDQELVEHLKASDVSLINAKEKGLFNAEEAWRKKINELLPADGLTVKHIKTGEDV 193
           LLF+YSD ELVEHL  S+VSL NAKEKG+F+ +E WRKKIN L+P +G+ VKHIKTGE++
Sbjct: 131 LLFKYSDCELVEHLDCSEVSLRNAKEKGIFDGDEEWRKKINALVPENGVVVKHIKTGEEI 190

Query: 194 GVSRRVVATFVMLTIADFSDQLFGFQDFLFNNSDGKLEFAGNSFSALWPGDGKPGLWMNS 253
            VSRRVV  F+++T+ADFSDQLFGFQD LF N DG+LEF GN+ +ALWPG+GKPGLWMNS
Sbjct: 191 VVSRRVVGVFLLMTMADFSDQLFGFQDELFCNHDGRLEFRGNNVTALWPGNGKPGLWMNS 250

Query: 254 LSRMGAIYSLIAREEEIFIQERKTSAAAVGVGVDKERDEDIELPVPPVFENCTRILDAKE 313
            SRMGAIYSLI REEEI ++ER+  A   G  V KERDEDI+L VPPVF  CT++LDAKE
Sbjct: 251 NSRMGAIYSLIVREEEILMEERRR-AFGSGFEVRKERDEDIDLVVPPVFSFCTKVLDAKE 309

Query: 314 QIEARDLYWEAVCGNSDGSKE-KLEKAEELLLRCIEKNPFVGEPHVVLGQIYLAKGEFEE 372
           QIEAR++YWE V  +SD SKE  LE+AEE LL CIEKNPFVGEPHV+L Q+YL K  F+E
Sbjct: 310 QIEAREMYWEVV--SSDTSKEGYLERAEERLLGCIEKNPFVGEPHVLLSQVYLGKKRFKE 367

Query: 373 AEREAGKGLMLLLEWGSPWDKRMSWEG 399
           AEREA KGL+LLL+WGSPWDKRMSWEG
Sbjct: 368 AEREAEKGLLLLLQWGSPWDKRMSWEG 394

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|11994774|dbj|BAB03164.1| unnamed protein product [Arabidopsis thaliana]

 Score =  592 bits (1525), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 288/387 (74%), Positives = 334/387 (86%), Gaps = 4/387 (1%)

Query: 14  ETLVASARPFLRGELEAIDKNLPSLIAVLRSVGAGECWHKHGSFLEHLVDIYRILKIWKA 73
           + ++ SARPFLRGELE ID  LPSLIAVL+SVGAGECWHKHGSFL+HL+DIY+ILK+WKA
Sbjct: 36  DAVLESARPFLRGELEKIDPKLPSLIAVLKSVGAGECWHKHGSFLDHLIDIYKILKLWKA 95

Query: 74  PDCVCLCGLFHSAYSNSYVNLAIFDPNTGRDVVRGHVGDAAEKLIHLFCIVPRQPLIHDD 133
           P+ VCLCGLFHSAYSNSYVNLAIFDP+TGRDVVR HVG+AAE LIHLFC+VPRQ LIHD+
Sbjct: 96  PESVCLCGLFHSAYSNSYVNLAIFDPSTGRDVVRDHVGEAAESLIHLFCVVPRQTLIHDE 155

Query: 134 LLFEYSDQELVEHLKASDVSLINAKEKGLFNAEEAWRKKINELLPADGLTVKHIKTGEDV 193
           LLF+YSD ELVEHL  S+VSL NAKEKG+F+ +E WRKKIN L+P +G+ VKHIKTGE++
Sbjct: 156 LLFKYSDCELVEHLDCSEVSLRNAKEKGIFDGDEEWRKKINALVPENGVVVKHIKTGEEI 215

Query: 194 GVSRRVVATFVMLTIADFSDQLFGFQDFLFNNSDGKLEFAGNSFSALWPGDGKPGLWMNS 253
            VSRRVV  F+++T+ADFSDQLFGFQD LF N DG+LEF GN+ +ALWPG+GKPGLWMNS
Sbjct: 216 VVSRRVVGVFLLMTMADFSDQLFGFQDELFCNHDGRLEFRGNNVTALWPGNGKPGLWMNS 275

Query: 254 LSRMGAIYSLIAREEEIFIQERKTSAAAVGVGVDKERDEDIELPVPPVFENCTRILDAKE 313
            SRMGAIYSLI REEEI ++ER+  A   G  V KERDEDI+L VPPVF  CT++LDAKE
Sbjct: 276 NSRMGAIYSLIVREEEILMEERRR-AFGSGFEVRKERDEDIDLVVPPVFSFCTKVLDAKE 334

Query: 314 QIEARDLYWEAVCGNSDGSKE-KLEKAEELLLRCIEKNPFVGEPHVVLGQIYLAKGEFEE 372
           QIEAR++YWE V  +SD SKE  LE+AEE LL CIEKNPFVGEPHV+L Q+YL K  F+E
Sbjct: 335 QIEAREMYWEVV--SSDTSKEGYLERAEERLLGCIEKNPFVGEPHVLLSQVYLGKKRFKE 392

Query: 373 AEREAGKGLMLLLEWGSPWDKRMSWEG 399
           AEREA KGL+LLL+WGSPWDKRMSWEG
Sbjct: 393 AEREAEKGLLLLLQWGSPWDKRMSWEG 419

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|110743422|dbj|BAE99597.1| hypothetical protein [Arabidopsis thaliana]

 Score =  591 bits (1523), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 288/382 (75%), Positives = 331/382 (86%), Gaps = 4/382 (1%)

Query: 19  SARPFLRGELEAIDKNLPSLIAVLRSVGAGECWHKHGSFLEHLVDIYRILKIWKAPDCVC 78
           SARPFLRGELE ID  LPSLIAVL+SVGAGECWHKHGSFL+HL+DIY+ILK+WKAP+ VC
Sbjct: 3   SARPFLRGELEKIDPKLPSLIAVLKSVGAGECWHKHGSFLDHLIDIYKILKLWKAPESVC 62

Query: 79  LCGLFHSAYSNSYVNLAIFDPNTGRDVVRGHVGDAAEKLIHLFCIVPRQPLIHDDLLFEY 138
           LCGLFHSAYSNSYVNLAIFDP+TGRDVVR HVG+AAE LIHLFC+VPRQ LIHD+LLF+Y
Sbjct: 63  LCGLFHSAYSNSYVNLAIFDPSTGRDVVRDHVGEAAESLIHLFCVVPRQTLIHDELLFKY 122

Query: 139 SDQELVEHLKASDVSLINAKEKGLFNAEEAWRKKINELLPADGLTVKHIKTGEDVGVSRR 198
           SD ELVEHL  S+VSL NAKEKG+F+ +E WRKKIN L+P +G+ VKHIKTGE++ VSRR
Sbjct: 123 SDCELVEHLDCSEVSLRNAKEKGIFDGDEEWRKKINALVPENGVVVKHIKTGEEIVVSRR 182

Query: 199 VVATFVMLTIADFSDQLFGFQDFLFNNSDGKLEFAGNSFSALWPGDGKPGLWMNSLSRMG 258
           VV  F+++T+ADFSDQLFGFQD LF N DG+LEF GN+ +ALWPG+GKPGLWMNS SRMG
Sbjct: 183 VVGVFLLMTMADFSDQLFGFQDELFCNHDGRLEFRGNNVTALWPGNGKPGLWMNSNSRMG 242

Query: 259 AIYSLIAREEEIFIQERKTSAAAVGVGVDKERDEDIELPVPPVFENCTRILDAKEQIEAR 318
           AIYSLI REEEI ++ER+  A   G  V KERDEDI+L VPPVF  CT++LDAKEQIEAR
Sbjct: 243 AIYSLIVREEEILMEERR-RAFGSGFEVRKERDEDIDLVVPPVFSFCTKVLDAKEQIEAR 301

Query: 319 DLYWEAVCGNSDGSKE-KLEKAEELLLRCIEKNPFVGEPHVVLGQIYLAKGEFEEAEREA 377
           ++YWE V  +SD SKE  LE+AEE LL CIEKNPFVGEPHV+L Q+YL K  F+EAEREA
Sbjct: 302 EMYWEVV--SSDTSKEGYLERAEERLLGCIEKNPFVGEPHVLLSQVYLGKKRFKEAEREA 359

Query: 378 GKGLMLLLEWGSPWDKRMSWEG 399
            KGL+LLL+WGSPWDKRMSWEG
Sbjct: 360 EKGLLLLLQWGSPWDKRMSWEG 381

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297830676|ref|XP_002883220.1| binding protein [Arabidopsis lyrata subsp. lyrata] gi|297329060|gb|EFH59479.1| binding protein [Arabidopsis lyrata subsp. lyrata]

 Score =  588 bits (1517), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 288/387 (74%), Positives = 331/387 (85%), Gaps = 4/387 (1%)

Query: 14  ETLVASARPFLRGELEAIDKNLPSLIAVLRSVGAGECWHKHGSFLEHLVDIYRILKIWKA 73
           + ++ SARPFLRGELE ID  LPSLIAVL+SVGAGECWHKHGSFL+HL+DIY+ILK+WKA
Sbjct: 11  DAVLESARPFLRGELEKIDPKLPSLIAVLKSVGAGECWHKHGSFLDHLIDIYKILKLWKA 70

Query: 74  PDCVCLCGLFHSAYSNSYVNLAIFDPNTGRDVVRGHVGDAAEKLIHLFCIVPRQPLIHDD 133
           P+ VCLCGLFHSAYSNSYVNLAIFDP+TGR+VVR HVG+AAE LIHLFC+VPRQ LIHDD
Sbjct: 71  PESVCLCGLFHSAYSNSYVNLAIFDPSTGREVVRDHVGEAAESLIHLFCVVPRQTLIHDD 130

Query: 134 LLFEYSDQELVEHLKASDVSLINAKEKGLFNAEEAWRKKINELLPADGLTVKHIKTGEDV 193
           LLF+YSD ELVEHL  S+VSL NAKEKG+F+ +E WRKKIN L+P +G  VKHIKTGE++
Sbjct: 131 LLFKYSDCELVEHLDCSEVSLRNAKEKGVFDGDEEWRKKINGLVPENGAVVKHIKTGEEI 190

Query: 194 GVSRRVVATFVMLTIADFSDQLFGFQDFLFNNSDGKLEFAGNSFSALWPGDGKPGLWMNS 253
            VSRRVV  F+ +T+ADFSDQLFGFQD LF N DG+LEF GN+ +ALWPG+GKPGLW+NS
Sbjct: 191 VVSRRVVGVFLFMTMADFSDQLFGFQDELFCNHDGRLEFRGNNVTALWPGNGKPGLWLNS 250

Query: 254 LSRMGAIYSLIAREEEIFIQERKTSAAAVGVGVDKERDEDIELPVPPVFENCTRILDAKE 313
            SRMGAIYSLI REEEI ++ER+  A   G  V KERDEDIEL VPPVF  CT++LDAKE
Sbjct: 251 NSRMGAIYSLIVREEEILMEERRR-AFGSGFEVRKERDEDIELVVPPVFSFCTKVLDAKE 309

Query: 314 QIEARDLYWEAVCGNSDGSKE-KLEKAEELLLRCIEKNPFVGEPHVVLGQIYLAKGEFEE 372
           QIEAR++YWE V  +SD SKE  LE+AEE LL CIEKNPFVGEPHV+L Q+YL K  F E
Sbjct: 310 QIEAREMYWEVV--SSDTSKEGYLERAEERLLGCIEKNPFVGEPHVLLSQVYLGKKRFNE 367

Query: 373 AEREAGKGLMLLLEWGSPWDKRMSWEG 399
           AEREA KGL+LLL+WGSPWDKRMSWEG
Sbjct: 368 AEREAEKGLLLLLQWGSPWDKRMSWEG 394

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225463770|ref|XP_002268202.1| PREDICTED: uncharacterized protein LOC100257837 [Vitis vinifera]

 Score =  578 bits (1491), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 296/388 (76%), Positives = 340/388 (87%), Gaps = 6/388 (1%)

Query: 12  YLETLVASARPFLRGELEAIDKNLPSLIAVLRSVGAGECWHKHGSFLEHLVDIYRILKIW 71
           +L+TL+ASARPFLRGELEA+   LPSLI+VLRSVGAGECWHKHGSFLEHL D+Y+ILK+W
Sbjct: 14  HLQTLLASARPFLRGELEAVHPKLPSLISVLRSVGAGECWHKHGSFLEHLFDMYKILKLW 73

Query: 72  KAPDCVCLCGLFHSAYSNSYVNLAIFDPNTGRDVVRGHVGDAAEKLIHLFCIVPRQPLIH 131
           KA + VCLCGLFHSAYSNSYVNLAIFDP+TGRD VR HVGDAAE+LI+LFC+VPRQPLIH
Sbjct: 74  KAQESVCLCGLFHSAYSNSYVNLAIFDPSTGRDTVRAHVGDAAEELIYLFCVVPRQPLIH 133

Query: 132 DDLLFEYSDQELVEHLKASDVSLINAKEKGLFNAEEAWRKKINELLPADGLTVKHIKTGE 191
           DDLLF YSD ELVEHLKAS+VS+ NAKE G+FN +EAWRKK+N L+P  G+TVKHIKTGE
Sbjct: 134 DDLLFRYSDDELVEHLKASEVSVRNAKEGGVFNGDEAWRKKVNSLVPPGGVTVKHIKTGE 193

Query: 192 DVGVSRRVVATFVMLTIADFSDQLFGFQDFLFNNSDGKLEFAGNSFSALWPGDGKPGLWM 251
           DV VSRRVVA FVM+T+ADFSDQL+GFQD LF+NS+G+LEF+GNSF ALWPGDGKPGLW+
Sbjct: 194 DVLVSRRVVAIFVMMTMADFSDQLYGFQDALFDNSNGQLEFSGNSFGALWPGDGKPGLWL 253

Query: 252 NSLSRMGAIYSLIAREEEIFIQERKTSAAAVGVGVDKERDEDIELPVPPVFENCTRILDA 311
           NS+SRMGA+YSL+ REEEIFI+ERK      G  V K RDE++EL +PPV ENCTR+L A
Sbjct: 254 NSISRMGAVYSLLVREEEIFIEERKRVG---GDQVVKGRDEELELVIPPVLENCTRVLGA 310

Query: 312 KEQIEARDLYWEAVCGNSDGSKEKLEKAEELLLRCIEKNPFVGEPHVVLGQIYLAKGEFE 371
           +EQIEA DLYWEAVC   +GSK  L+ AE+LL RC+EKNPFVGEPHVVL QIYL  G FE
Sbjct: 311 EEQIEATDLYWEAVC---EGSKRGLDWAEKLLGRCVEKNPFVGEPHVVLAQIYLTNGRFE 367

Query: 372 EAEREAGKGLMLLLEWGSPWDKRMSWEG 399
           EAEREA KGL L+LEWG+PWDKRM+WEG
Sbjct: 368 EAEREAEKGLKLMLEWGNPWDKRMTWEG 395

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225463772|ref|XP_002268460.1| PREDICTED: uncharacterized protein LOC100252690 [Vitis vinifera]

 Score =  575 bits (1481), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 294/388 (75%), Positives = 340/388 (87%), Gaps = 6/388 (1%)

Query: 12  YLETLVASARPFLRGELEAIDKNLPSLIAVLRSVGAGECWHKHGSFLEHLVDIYRILKIW 71
           +L+TL+ASARPFLRGELEA+   LPSLI+VLRSVGAGECWHKHGSFLEHLVD+Y+ILK+W
Sbjct: 14  HLQTLLASARPFLRGELEAVHPKLPSLISVLRSVGAGECWHKHGSFLEHLVDMYKILKLW 73

Query: 72  KAPDCVCLCGLFHSAYSNSYVNLAIFDPNTGRDVVRGHVGDAAEKLIHLFCIVPRQPLIH 131
           KA + VCLCGLFHSAYSNSYVNLAIF+P+TGRD VR HVGDAAE+LI+LFC+VPRQPLIH
Sbjct: 74  KAQESVCLCGLFHSAYSNSYVNLAIFEPSTGRDTVRAHVGDAAEELIYLFCVVPRQPLIH 133

Query: 132 DDLLFEYSDQELVEHLKASDVSLINAKEKGLFNAEEAWRKKINELLPADGLTVKHIKTGE 191
           DDLLF YSD ELVEHLKAS+VS+ NAKE G+FN +EAWRKK+N L+P  G+TVKHIKTGE
Sbjct: 134 DDLLFRYSDDELVEHLKASEVSVRNAKEGGVFNGDEAWRKKVNSLVPPGGVTVKHIKTGE 193

Query: 192 DVGVSRRVVATFVMLTIADFSDQLFGFQDFLFNNSDGKLEFAGNSFSALWPGDGKPGLWM 251
           DV VSRRVVA FVM+T+ADFSDQ +GFQD LF+NS+G+LEF+GNS+ ALWPGDGKPGLW+
Sbjct: 194 DVLVSRRVVAIFVMMTMADFSDQHYGFQDALFDNSNGRLEFSGNSYGALWPGDGKPGLWL 253

Query: 252 NSLSRMGAIYSLIAREEEIFIQERKTSAAAVGVGVDKERDEDIELPVPPVFENCTRILDA 311
           NS+SRMGA+YSL+ REEEIFI+ERK      G  V K RDE++EL +PPV ENCTR+L A
Sbjct: 254 NSISRMGAVYSLLVREEEIFIEERKRVG---GDQVVKGRDEELELVIPPVLENCTRVLGA 310

Query: 312 KEQIEARDLYWEAVCGNSDGSKEKLEKAEELLLRCIEKNPFVGEPHVVLGQIYLAKGEFE 371
           +EQIEA DLYWEAVC   +GSK  L+ AE+LL RC+EKNPFVGEPHVVL QIYL  G FE
Sbjct: 311 EEQIEATDLYWEAVC---EGSKRGLDWAEKLLGRCVEKNPFVGEPHVVLAQIYLTNGRFE 367

Query: 372 EAEREAGKGLMLLLEWGSPWDKRMSWEG 399
           EAEREA KGL L+LEWG+PWDKRM+WEG
Sbjct: 368 EAEREAEKGLKLMLEWGNPWDKRMTWEG 395

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449464960|ref|XP_004150197.1| PREDICTED: uncharacterized protein LOC101221411 [Cucumis sativus]

 Score =  573 bits (1478), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 279/387 (72%), Positives = 326/387 (84%), Gaps = 10/387 (2%)

Query: 13  LETLVASARPFLRGELEAIDKNLPSLIAVLRSVGAGECWHKHGSFLEHLVDIYRILKIWK 72
           LE L+ S RPFLRGELE ++  LPSLI+VLRSVGAGECWHKHG+FL+HLVDIYRILKIWK
Sbjct: 16  LEPLLGSIRPFLRGELEKVNPILPSLISVLRSVGAGECWHKHGTFLDHLVDIYRILKIWK 75

Query: 73  APDCVCLCGLFHSAYSNSYVNLAIFDPNTGRDVVRGHVGDAAEKLIHLFCIVPRQPLIHD 132
           A + VCLCGLFHSAYSNSYVNLAIFDP+TGRDVVRGHVG+AAE+LIHLFCIVPRQ LIHD
Sbjct: 76  AQEPVCLCGLFHSAYSNSYVNLAIFDPSTGRDVVRGHVGEAAERLIHLFCIVPRQSLIHD 135

Query: 133 DLLFEYSDQELVEHLKASDVSLINAKEKGLFNAEEAWRKKINELLPADGLTVKHIKTGED 192
           DLLF YSD ELV+HLK S+ SL NA E G FN +E WRKK+  +LPA+G+TVKHIKTGED
Sbjct: 136 DLLFHYSDSELVDHLKFSNTSLKNALENGHFNEDETWRKKLQSILPANGVTVKHIKTGED 195

Query: 193 VGVSRRVVATFVMLTIADFSDQLFGFQDFLFNNSDGKLEFAGNSFSALWPGDGKPGLWMN 252
           V VSRRVVA F+M+TIADFSDQLFGFQD LF N++G+LEF GN++ +LWPG+GKPGLWMN
Sbjct: 196 VTVSRRVVAIFLMMTIADFSDQLFGFQDSLFENTNGRLEFPGNNYKSLWPGNGKPGLWMN 255

Query: 253 SLSRMGAIYSLIAREEEIFIQERKTSAAAVGVGVDKERDEDIELPVPPVFENCTRILDAK 312
           S SRMGAIY+LIAREE I I +RK +     +GV  ERDED+EL +PP+FENCTR+LDA 
Sbjct: 256 SASRMGAIYTLIAREESILIAQRKRNNE---LGVKTERDEDLELVIPPIFENCTRVLDAD 312

Query: 313 EQIEARDLYWEAVCGNSDGSKEKLEKAEELLLRCIEKNPFVGEPHVVLGQIYLAKGEFEE 372
           +QI ARDLYWE VC       EK +++EELLL+C+ KNPF+GE HV LGQ+YL +G FEE
Sbjct: 313 DQITARDLYWEGVC-------EKSDRSEELLLKCVMKNPFIGEAHVALGQLYLGEGRFEE 365

Query: 373 AEREAGKGLMLLLEWGSPWDKRMSWEG 399
           AE+EA +G+ L+L WGS WDKRM WEG
Sbjct: 366 AEKEAEEGVRLMLTWGSAWDKRMPWEG 392

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388504458|gb|AFK40295.1| unknown [Medicago truncatula]

 Score =  572 bits (1473), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 272/390 (69%), Positives = 325/390 (83%), Gaps = 6/390 (1%)

Query: 11  DYLETLVASARPFLRGELEAIDKNLPSLIAVLRSVGAGECWHKHGSFLEHLVDIYRILKI 70
           +YLETL+ SA+PFLR EL +ID  LPSLI +LRSVGA ECWHKHG+FLEHL+DI+RIL +
Sbjct: 13  EYLETLLTSAKPFLRNELISIDPKLPSLITILRSVGASECWHKHGTFLEHLIDIFRILHL 72

Query: 71  WKAPDCVCLCGLFHSAYSNSYVNLAIFDPNTGRDVVRGHVGDAAEKLIHLFCIVPRQPLI 130
           WK+P  V LCGLFHSAYSNSYVNLAIFDP+T R+VVRGHVG  AE+LIHLFC+VPRQ LI
Sbjct: 73  WKSPYSVSLCGLFHSAYSNSYVNLAIFDPSTSREVVRGHVGVEAERLIHLFCVVPRQSLI 132

Query: 131 HDDLLFEYSDQELVEHLKASDVSLINAKEKGLFNAEEAWRKKINELLPADGLTVKHIKTG 190
           HDDLLF YSD+EL   L+ S++SL NAKEKG+FN +E+WRKK+  L+PADG+ VKHI+TG
Sbjct: 133 HDDLLFHYSDKELCHDLEKSELSLRNAKEKGIFNKDESWRKKLQGLVPADGIKVKHIRTG 192

Query: 191 EDVGVSRRVVATFVMLTIADFSDQLFGFQDFLFNNSDGKLEFAGNSFSALWPGDGKPGLW 250
           EDV +SRRVVA FVM+T+ADF DQLFGFQD LF N DG+LEF GN+F A+WPG+GKPGLW
Sbjct: 193 EDVKLSRRVVAVFVMMTMADFCDQLFGFQDMLFENFDGRLEFKGNNFGAVWPGNGKPGLW 252

Query: 251 MNSLSRMGAIYSLIAREEEIFIQERKTSAAAVGV-GVDKERDEDIELPVPPVFENCTRIL 309
           +NS+SRMGA+Y+LI REEEIF++E+K      GV GVD ERDE IEL +PPVF  CT++L
Sbjct: 253 LNSISRMGAVYNLILREEEIFLEEKKKMLGVKGVNGVDYERDEHIELVLPPVFAKCTKVL 312

Query: 310 DAKEQIEARDLYWEAVCGNSDGSKEKLEKAEELLLRCIEKNPFVGEPHVVLGQIYLAKGE 369
           DA++QI ARDLYWEA+       +E LEK EELL++ IEKNPFVGEP+VVL Q+YL KG 
Sbjct: 313 DARDQIVARDLYWEAMI-----CEEGLEKIEELLVKSIEKNPFVGEPYVVLSQVYLTKGR 367

Query: 370 FEEAEREAGKGLMLLLEWGSPWDKRMSWEG 399
           FEE E+EA +GL LLLEWG  WDKR+SWEG
Sbjct: 368 FEEGEKEAERGLTLLLEWGCHWDKRISWEG 397

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	399
TAIR|locus:2095350	425	AT3G19990 "AT3G19990" [Arabido	0.959	0.901	0.718	5.2e-152

TAIR|locus:2095350 AT3G19990 "AT3G19990" [Arabidopsis thaliana (taxid:3702)]

 Score = 1483 (527.1 bits), Expect = 5.2e-152, P = 5.2e-152
 Identities = 278/387 (71%), Positives = 325/387 (83%)

Query:    14 ETLVASARPFLRGELEAIDKNLPSLIAVLRSVGAGECWHKHGSFLEHLVDIYRILKIWKA 73
             + ++ SARPFLRGELE ID  LPSLIAVL+SVGAGECWHKHGSFL+HL+DIY+ILK+WKA
Sbjct:    11 DAVLESARPFLRGELEKIDPKLPSLIAVLKSVGAGECWHKHGSFLDHLIDIYKILKLWKA 70

Query:    74 PDCVCLCGLFHSAYSNSYVNLAIFDPNTGRDVVRGHVGDAAEKLIHLFCIVPRQPLIHDD 133
             P+ VCLCGLFHSAYSNSYVNLAIFDP+TGRDVVR HVG+AAE LIHLFC+VPRQ LIHD+
Sbjct:    71 PESVCLCGLFHSAYSNSYVNLAIFDPSTGRDVVRDHVGEAAESLIHLFCVVPRQTLIHDE 130

Query:   134 LLFEYSDQELVEHLKASDVSLINAKEKGLFNAEEAWRKKINELLPADGLTVKHIKTGEDV 193
             LLF+YSD ELVEHL  S+VSL NAKEKG+F+ +E WRKKIN L+P +G+ VKHIKTGE++
Sbjct:   131 LLFKYSDCELVEHLDCSEVSLRNAKEKGIFDGDEEWRKKINALVPENGVVVKHIKTGEEI 190

Query:   194 GVSRRVVATFVMLTIADFSDQLFGFQDFLFNNSDGKLEFAGNSFSALWPGDGKPGLWMNS 253
              VSRRVV  F+++T+ADFSDQLFGFQD LF N DG+LEF GN+ +ALWPG+GKPGLWMNS
Sbjct:   191 VVSRRVVGVFLLMTMADFSDQLFGFQDELFCNHDGRLEFRGNNVTALWPGNGKPGLWMNS 250

Query:   254 LSRMGAIYSLIAREEEIFIQERKTSAAAVGVGVDKERDEDIELPVPPVFENCTRILDAKE 313
              SRMGAIYSLI REEEI ++ER+ +  + G  V KERDEDI+L VPPVF  CT++LDAKE
Sbjct:   251 NSRMGAIYSLIVREEEILMEERRRAFGS-GFEVRKERDEDIDLVVPPVFSFCTKVLDAKE 309

Query:   314 QIEARDLYWEAVCGNSDGSXXXXXXXXXXXXR-CIEKNPFVGEPHVVLGQIYLAKGEFEE 372
             QIEAR++YWE V  +SD S              CIEKNPFVGEPHV+L Q+YL K  F+E
Sbjct:   310 QIEAREMYWEVV--SSDTSKEGYLERAEERLLGCIEKNPFVGEPHVLLSQVYLGKKRFKE 367

Query:   373 AEREAGKGLMLLLEWGSPWDKRMSWEG 399
             AEREA KGL+LLL+WGSPWDKRMSWEG
Sbjct:   368 AEREAEKGLLLLLQWGSPWDKRMSWEG 394


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.320   0.138   0.426    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      399       387   0.00093  117 3  11 22  0.40    34
                                                     34  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  622 (66 KB)
  Total size of DFA:  273 KB (2143 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:02
  No. of threads or processors used:  24
  Search cpu time:  31.12u 0.08s 31.20t   Elapsed:  00:00:10
  Total cpu time:  31.12u 0.08s 31.20t   Elapsed:  00:00:14
  Start:  Thu May  9 18:01:45 2013   End:  Thu May  9 18:01:59 2013

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: eugene3.00071331 hypothetical protein (431 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	399
cd00189	100	cd00189, TPR, Tetratricopeptide repeat domain; typ	0.002

>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here

 Score = 37.4 bits (87), Expect = 0.002
 Identities = 14/55 (25%), Positives = 24/55 (43%)

Query: 327 GNSDGSKEKLEKAEELLLRCIEKNPFVGEPHVVLGQIYLAKGEFEEAEREAGKGL 381
           GN        ++A E   + +E +P   + +  L   Y   G++EEA  +  K L
Sbjct: 7   GNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKAL 61

Length = 100

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	399
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	96.68
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	96.58
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	96.46
PF13431	34	TPR_17: Tetratricopeptide repeat	96.08
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	95.15
PF13371	73	TPR_9: Tetratricopeptide repeat	95.05
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	94.96
PF13328	153	HD_4: HD domain; PDB: 3NR1_B.	94.94
TIGR02552	135	LcrH_SycD type III secretion low calcium response	94.88
PRK12370	553	invasion protein regulator; Provisional	94.72
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	94.42
TIGR02552	135	LcrH_SycD type III secretion low calcium response	94.3
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	94.22
PRK11189	296	lipoprotein NlpI; Provisional	94.14
PRK15359	144	type III secretion system chaperone protein SscB;	94.1
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	94.05
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	93.91
PRK15359	144	type III secretion system chaperone protein SscB;	93.73
PRK12370	553	invasion protein regulator; Provisional	93.28
PRK10370	198	formate-dependent nitrite reductase complex subuni	93.27
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	93.06
PRK10370	198	formate-dependent nitrite reductase complex subuni	93.03
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	92.77
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	92.6
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	92.07
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	91.79
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	91.4
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	91.2
PRK11788	389	tetratricopeptide repeat protein; Provisional	90.75
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	90.69
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	90.45
PF03704	146	BTAD: Bacterial transcriptional activator domain;	90.25
PRK11788	389	tetratricopeptide repeat protein; Provisional	89.74
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	89.55
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	89.14
PF12688	120	TPR_5: Tetratrico peptide repeat	88.89
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	88.62
PF13428	44	TPR_14: Tetratricopeptide repeat	88.56
PF07721	26	TPR_4: Tetratricopeptide repeat; InterPro: IPR0117	88.36
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	88.21
PF13512	142	TPR_18: Tetratricopeptide repeat	87.68
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	87.33
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	86.99
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	86.76
PRK11189	296	lipoprotein NlpI; Provisional	86.7
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	86.59
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	86.59
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	86.17
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	86.13
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	85.67
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	85.11
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	84.05
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	83.9
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	83.38
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	83.22
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	83.12
PRK11906	458	transcriptional regulator; Provisional	83.01
TIGR03276	179	Phn-HD phosphonate degradation operons associated	82.74
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	82.32
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	82.16
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	81.65
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	81.07
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	80.93
smart00028	34	TPR Tetratricopeptide repeats. Repeats present in	80.56
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	80.5
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	80.13

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=96.68  E-value=0.0038  Score=45.86  Aligned_cols=50  Identities=22%  Similarity=0.351  Sum_probs=44.9

Q ss_pred             hhHHHHHHHHHHHHhhCCCcCchHHHHHHHHhccCCcHHHHHHHHHHHHH
Q 015869          334 EKLEKAEELLLRCIEKNPFVGEPHVVLGQIYLAKGEFEEAEREAGKGLML  383 (399)
Q Consensus       334 ~~~d~a~~lL~~~i~~NP~VgEP~~vLAQ~~l~~gr~~eA~~~A~~gL~l  383 (399)
                      ...+.|++.++++++.+|-..+=+..||++|...|++++|...-++++++
T Consensus        11 g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~   60 (65)
T PF13432_consen   11 GDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALEL   60 (65)
T ss_dssp             THHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            34889999999999999999999999999999999999999888877764

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=96.58  E-value=0.0051  Score=45.43  Aligned_cols=51  Identities=33%  Similarity=0.449  Sum_probs=47.7

Q ss_pred             chhHHHHHHHHHHHHhhCCCcCchHHHHHHHHhccC-CcHHHHHHHHHHHHH
Q 015869          333 KEKLEKAEELLLRCIEKNPFVGEPHVVLGQIYLAKG-EFEEAEREAGKGLML  383 (399)
Q Consensus       333 ~~~~d~a~~lL~~~i~~NP~VgEP~~vLAQ~~l~~g-r~~eA~~~A~~gL~l  383 (399)
                      ....+.|...+.++|++||--.++++-+|.+|...| ++++|....+++|++
T Consensus        16 ~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l   67 (69)
T PF13414_consen   16 QGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKL   67 (69)
T ss_dssp             TTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence            345889999999999999999999999999999999 899999999999986

...

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=96.46  E-value=0.0038  Score=45.84  Aligned_cols=47  Identities=34%  Similarity=0.547  Sum_probs=41.9

Q ss_pred             hHHHHHHHHHHHHhhCCCcCchHHHHHHHHhccCCcHHHHHHHHHHH
Q 015869          335 KLEKAEELLLRCIEKNPFVGEPHVVLGQIYLAKGEFEEAEREAGKGL  381 (399)
Q Consensus       335 ~~d~a~~lL~~~i~~NP~VgEP~~vLAQ~~l~~gr~~eA~~~A~~gL  381 (399)
                      ..+.|.+++++++..||--.+-++.||++|+..|++++|+..-++.+
T Consensus         6 ~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~   52 (68)
T PF14559_consen    6 DYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLL   52 (68)
T ss_dssp             HHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCH
T ss_pred             CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            47899999999999999999999999999999999999998766544

...

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=96.08  E-value=0.0037  Score=42.92  Aligned_cols=33  Identities=36%  Similarity=0.528  Sum_probs=31.0

Q ss_pred             HHHHHhhCCCcCchHHHHHHHHhccCCcHHHHH
Q 015869          343 LLRCIEKNPFVGEPHVVLGQIYLAKGEFEEAER  375 (399)
Q Consensus       343 L~~~i~~NP~VgEP~~vLAQ~~l~~gr~~eA~~  375 (399)
                      .++||++||--.+.+.-||.+|+..|++++|++
T Consensus         2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~   34 (34)
T PF13431_consen    2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA   34 (34)
T ss_pred             hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence            579999999999999999999999999999963

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=95.15  E-value=0.036  Score=46.40  Aligned_cols=50  Identities=32%  Similarity=0.347  Sum_probs=42.0

Q ss_pred             hhHHHHHHHHHHHHhhCCCcCchHHHHHHHHhccCCcHHHHHHHHHHHHH
Q 015869          334 EKLEKAEELLLRCIEKNPFVGEPHVVLGQIYLAKGEFEEAEREAGKGLML  383 (399)
Q Consensus       334 ~~~d~a~~lL~~~i~~NP~VgEP~~vLAQ~~l~~gr~~eA~~~A~~gL~l  383 (399)
                      ...+.|.+.++++++.+|-..+.+..+|.+|...|++++|....++++++
T Consensus        45 ~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~   94 (234)
T TIGR02521        45 GDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTL   94 (234)
T ss_pred             CCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            34778888888888888888888888899999899998888888887765

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=95.05  E-value=0.069  Score=39.67  Aligned_cols=50  Identities=30%  Similarity=0.360  Sum_probs=45.8

Q ss_pred             hhHHHHHHHHHHHHhhCCCcCchHHHHHHHHhccCCcHHHHHHHHHHHHH
Q 015869          334 EKLEKAEELLLRCIEKNPFVGEPHVVLGQIYLAKGEFEEAEREAGKGLML  383 (399)
Q Consensus       334 ~~~d~a~~lL~~~i~~NP~VgEP~~vLAQ~~l~~gr~~eA~~~A~~gL~l  383 (399)
                      ..++.|.+.++++++.||=--.++.-+|.+|...|+|++|.+.-+..|+.
T Consensus         9 ~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~   58 (73)
T PF13371_consen    9 EDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALEL   58 (73)
T ss_pred             CCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence            34789999999999999999999999999999999999999998888754

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=94.96  E-value=0.042  Score=52.05  Aligned_cols=79  Identities=14%  Similarity=0.133  Sum_probs=61.1

Q ss_pred             cccccccCChhhHHHHHHHHHHhhccCCCCCchhHHHHHHHHHHHHhhCCCcCchH---HHHHHHHhccCCcHHHHHHHH
Q 015869          302 FENCTRILDAKEQIEARDLYWEAVCGNSDGSKEKLEKAEELLLRCIEKNPFVGEPH---VVLGQIYLAKGEFEEAEREAG  378 (399)
Q Consensus       302 F~~CT~vL~~~dq~aArdlYWeav~~~~~~~~~~~d~a~~lL~~~i~~NP~VgEP~---~vLAQ~~l~~gr~~eA~~~A~  378 (399)
                      |.+|+.--+...+..+..+|+++..   .-.....+.|.+.+++.+...|.-..-.   +-||++|.+.|+|++|....+
T Consensus        17 lsgCs~~~~~~~~~~~~~~Y~~A~~---~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e   93 (243)
T PRK10866         17 LAGCSGSKEEVPDNPPSEIYATAQQ---KLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAID   93 (243)
T ss_pred             HhhcCCCCcCCCCCCHHHHHHHHHH---HHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence            6678542222223578889999986   3344568999999999999999775444   678999999999999999999


Q ss_pred             HHHHH
Q 015869          379 KGLML  383 (399)
Q Consensus       379 ~gL~l  383 (399)
                      +-+++
T Consensus        94 ~fi~~   98 (243)
T PRK10866         94 RFIRL   98 (243)
T ss_pred             HHHHh
Confidence            88775

>PF13328 HD_4: HD domain; PDB: 3NR1_B

Probab=94.94  E-value=0.042  Score=48.07  Aligned_cols=73  Identities=14%  Similarity=0.278  Sum_probs=51.1

Q ss_pred             CCccccCCCChHhhHHHHHHHHHhcCCchHHHHhccchhcccCccccccCCCCCcchHHHHHhhchhhhHHhhhhccccC
Q 015869           47 AGECWHKHGSFLEHLVDIYRILKIWKAPDCVCLCGLFHSAYSNSYVNLAIFDPNTGRDVVRGHVGDAAEKLIHLFCIVPR  126 (399)
Q Consensus        47 Age~~Hk~GTf~~HL~~V~~iL~~Wgap~~V~~AGLfHSaYGt~~f~laifdp~~~R~~vr~lIG~~AE~LVylfct~dR  126 (399)
                      .++....+.++..|+..|..+|..+|....+..|||+|-++-.     .    .+. .+|++.+|++...+|.-..-.++
T Consensus        10 ~~~~~~~g~py~~H~~~va~~l~~~~~d~~~i~aalLHD~ied-----~----~~~-~~i~~~fg~~V~~lV~~lt~~~~   79 (153)
T PF13328_consen   10 AGQRRKSGEPYISHPLEVAEILAELGLDEETIAAALLHDVIED-----T----ETT-EDIEERFGEDVADLVDALTKIKK   79 (153)
T ss_dssp             TT-B-ST--BTTHHHHHHHHHHHTS---HHHHHHHHHTTHHHH-----S----S---HHHHHHHHHHHHHHHHHT---TT
T ss_pred             hcccCCCCCcHHHHHHHHHHHHHHcCCCHHHHhhheeecHHHh-----c----CCH-HHHHHccChHHHHHHHHHHhccc
Confidence            3555555668999999999999999999999999999988873     1    234 88999999999999988776655


Q ss_pred             chh
Q 015869          127 QPL  129 (399)
Q Consensus       127 ~~l  129 (399)
                      ..-
T Consensus        80 ~~~   82 (153)
T PF13328_consen   80 LSK   82 (153)
T ss_dssp             S-H
T ss_pred             ccc
Confidence            544

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=94.88  E-value=0.046  Score=44.61  Aligned_cols=48  Identities=21%  Similarity=0.158  Sum_probs=32.5

Q ss_pred             HHHHHHHHHHHHhhCCCcCchHHHHHHHHhccCCcHHHHHHHHHHHHH
Q 015869          336 LEKAEELLLRCIEKNPFVGEPHVVLGQIYLAKGEFEEAEREAGKGLML  383 (399)
Q Consensus       336 ~d~a~~lL~~~i~~NP~VgEP~~vLAQ~~l~~gr~~eA~~~A~~gL~l  383 (399)
                      .+.|.+.++++++.+|-..+++..+|++|...|++++|...-++++++
T Consensus        67 ~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  114 (135)
T TIGR02552        67 YEEAIDAYALAAALDPDDPRPYFHAAECLLALGEPESALKALDLAIEI  114 (135)
T ss_pred             HHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            455666666777777777777777777777777777776666666654

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>PRK12370 invasion protein regulator; Provisional

Probab=94.72  E-value=0.11  Score=53.96  Aligned_cols=48  Identities=19%  Similarity=0.140  Sum_probs=27.3

Q ss_pred             HHHHHHHHHHHHhhCCCcCchHHHHHHHHhccCCcHHHHHHHHHHHHH
Q 015869          336 LEKAEELLLRCIEKNPFVGEPHVVLGQIYLAKGEFEEAEREAGKGLML  383 (399)
Q Consensus       336 ~d~a~~lL~~~i~~NP~VgEP~~vLAQ~~l~~gr~~eA~~~A~~gL~l  383 (399)
                      .++|.+.++++++.||--.+.|..||++|...|++++|+...+++|++
T Consensus       320 ~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l  367 (553)
T PRK12370        320 MIKAKEHAIKATELDHNNPQALGLLGLINTIHSEYIVGSLLFKQANLL  367 (553)
T ss_pred             HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence            345555555555555555555555555555555555555555555543

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=94.42  E-value=0.068  Score=53.09  Aligned_cols=51  Identities=20%  Similarity=0.240  Sum_probs=46.6

Q ss_pred             hhHHHHHHHHHHHHhhCCCcCchHHHHHHHHhccCCcHHHHHHHHHHHHHH
Q 015869          334 EKLEKAEELLLRCIEKNPFVGEPHVVLGQIYLAKGEFEEAEREAGKGLMLL  384 (399)
Q Consensus       334 ~~~d~a~~lL~~~i~~NP~VgEP~~vLAQ~~l~~gr~~eA~~~A~~gL~ll  384 (399)
                      ...+.|...++++|++||--.+.+.-|+++|...|+|++|....++++++-
T Consensus        50 g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~  100 (356)
T PLN03088         50 GNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQTAKAALEKGASLA  100 (356)
T ss_pred             CCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC
Confidence            347789999999999999999999999999999999999999999998763

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=94.30  E-value=0.12  Score=42.08  Aligned_cols=63  Identities=17%  Similarity=0.121  Sum_probs=51.7

Q ss_pred             HHHHHHhhccCCCCCchhHHHHHHHHHHHHhhCCCcCchHHHHHHHHhccCCcHHHHHHHHHHHHH
Q 015869          318 RDLYWEAVCGNSDGSKEKLEKAEELLLRCIEKNPFVGEPHVVLGQIYLAKGEFEEAEREAGKGLML  383 (399)
Q Consensus       318 rdlYWeav~~~~~~~~~~~d~a~~lL~~~i~~NP~VgEP~~vLAQ~~l~~gr~~eA~~~A~~gL~l  383 (399)
                      ..+|..+.+   -......+.|.+++++++..||...+.+..+|++|...|+|++|.....++++.
T Consensus        18 ~~~~~~a~~---~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~   80 (135)
T TIGR02552        18 EQIYALAYN---LYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAAL   80 (135)
T ss_pred             HHHHHHHHH---HHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            446666654   112234788999999999999999999999999999999999999988887765

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=94.22  E-value=0.11  Score=51.99  Aligned_cols=54  Identities=24%  Similarity=0.270  Sum_probs=48.5

Q ss_pred             CCchhHHHHHHHHHHHHhhCCCcCchHHHHHHHHhccCCcHHHHHHHHHHHHHH
Q 015869          331 GSKEKLEKAEELLLRCIEKNPFVGEPHVVLGQIYLAKGEFEEAEREAGKGLMLL  384 (399)
Q Consensus       331 ~~~~~~d~a~~lL~~~i~~NP~VgEP~~vLAQ~~l~~gr~~eA~~~A~~gL~ll  384 (399)
                      ....+++....-|+.-+.+||=-+|++++|+++|++.|++++|..+=..+++|.
T Consensus       133 ~~~~~~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~  186 (287)
T COG4235         133 PAEQEMEALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLA  186 (287)
T ss_pred             CCcccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhC
Confidence            344558888999999999999999999999999999999999999998888863

>PRK11189 lipoprotein NlpI; Provisional

Probab=94.14  E-value=0.084  Score=50.59  Aligned_cols=78  Identities=19%  Similarity=0.144  Sum_probs=48.5

Q ss_pred             ccccccCC---hhhHHHHHHHHHHhhccCCCCCchhHHHHHHHHHHHHhhCCCcCchHHHHHHHHhccCCcHHHHHHHHH
Q 015869          303 ENCTRILD---AKEQIEARDLYWEAVCGNSDGSKEKLEKAEELLLRCIEKNPFVGEPHVVLGQIYLAKGEFEEAEREAGK  379 (399)
Q Consensus       303 ~~CT~vL~---~~dq~aArdlYWeav~~~~~~~~~~~d~a~~lL~~~i~~NP~VgEP~~vLAQ~~l~~gr~~eA~~~A~~  379 (399)
                      .+-+++|.   -.+..-|.-.|..++.   -......+.|...+.+++++||=-.+-+..|+.+|...|+|++|...-.+
T Consensus        47 ~~~~~~l~~~~~~~~~~a~~~~~~g~~---~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~  123 (296)
T PRK11189         47 ARLNQILASRDLTDEERAQLHYERGVL---YDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDS  123 (296)
T ss_pred             HHHHHHHccccCCcHhhHHHHHHHHHH---HHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence            34455553   2223334445555544   11233366677777777777777777777777777777777777777777


Q ss_pred             HHHH
Q 015869          380 GLML  383 (399)
Q Consensus       380 gL~l  383 (399)
                      +|++
T Consensus       124 Al~l  127 (296)
T PRK11189        124 VLEL  127 (296)
T ss_pred             HHHh
Confidence            7765

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=94.10  E-value=0.14  Score=44.34  Aligned_cols=49  Identities=14%  Similarity=0.056  Sum_probs=41.8

Q ss_pred             hHHHHHHHHHHHHhhCCCcCchHHHHHHHHhccCCcHHHHHHHHHHHHH
Q 015869          335 KLEKAEELLLRCIEKNPFVGEPHVVLGQIYLAKGEFEEAEREAGKGLML  383 (399)
Q Consensus       335 ~~d~a~~lL~~~i~~NP~VgEP~~vLAQ~~l~~gr~~eA~~~A~~gL~l  383 (399)
                      ..+.|...++++++.||=-.+++.-|+++|...|++++|.....+++++
T Consensus        73 ~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~  121 (144)
T PRK15359         73 EYTTAINFYGHALMLDASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKM  121 (144)
T ss_pred             hHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            3677888888899889988888888999989899999988888888764

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=94.05  E-value=0.09  Score=47.13  Aligned_cols=80  Identities=20%  Similarity=0.284  Sum_probs=61.1

Q ss_pred             ccccccccCCh----hhHHHHHHHHHHhhccCCCCCchhHHHHHHHHHHHHhhCC---CcCchHHHHHHHHhccCCcHHH
Q 015869          301 VFENCTRILDA----KEQIEARDLYWEAVCGNSDGSKEKLEKAEELLLRCIEKNP---FVGEPHVVLGQIYLAKGEFEEA  373 (399)
Q Consensus       301 VF~~CT~vL~~----~dq~aArdlYWeav~~~~~~~~~~~d~a~~lL~~~i~~NP---~VgEP~~vLAQ~~l~~gr~~eA  373 (399)
                      .|..|+++=..    .+...+..+|=.+++   --.....+.|...+++++..||   +.-+.++-+|++|...|++++|
T Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~---~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A   89 (235)
T TIGR03302        13 LLAGCSSKKKKEADPVEEWPAEELYEEAKE---ALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEA   89 (235)
T ss_pred             HHhhccCCcccccCCcccCCHHHHHHHHHH---HHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHH
Confidence            35678877444    556666677766654   1133447889999999999987   4456789999999999999999


Q ss_pred             HHHHHHHHHH
Q 015869          374 EREAGKGLML  383 (399)
Q Consensus       374 ~~~A~~gL~l  383 (399)
                      ....++.++.
T Consensus        90 ~~~~~~~l~~   99 (235)
T TIGR03302        90 IAAADRFIRL   99 (235)
T ss_pred             HHHHHHHHHH
Confidence            9999988764

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=93.91  E-value=0.13  Score=35.65  Aligned_cols=50  Identities=32%  Similarity=0.341  Sum_probs=44.4

Q ss_pred             hhHHHHHHHHHHHHhhCCCcCchHHHHHHHHhccCCcHHHHHHHHHHHHH
Q 015869          334 EKLEKAEELLLRCIEKNPFVGEPHVVLGQIYLAKGEFEEAEREAGKGLML  383 (399)
Q Consensus       334 ~~~d~a~~lL~~~i~~NP~VgEP~~vLAQ~~l~~gr~~eA~~~A~~gL~l  383 (399)
                      ...++|...+.+++..+|--.+.+..+|++|+..|++++|.....++++.
T Consensus        48 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~   97 (100)
T cd00189          48 GKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLGKYEEALEAYEKALEL   97 (100)
T ss_pred             HHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHHhHHHHHHHHHHHHcc
Confidence            44788999999999999999899999999999999999999888777653

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=93.73  E-value=0.1  Score=45.12  Aligned_cols=54  Identities=19%  Similarity=0.219  Sum_probs=48.6

Q ss_pred             chhHHHHHHHHHHHHhhCCCcCchHHHHHHHHhccCCcHHHHHHHHHHHHHHHh
Q 015869          333 KEKLEKAEELLLRCIEKNPFVGEPHVVLGQIYLAKGEFEEAEREAGKGLMLLLE  386 (399)
Q Consensus       333 ~~~~d~a~~lL~~~i~~NP~VgEP~~vLAQ~~l~~gr~~eA~~~A~~gL~ll~~  386 (399)
                      +...+.|.+.+++++..||.-.+-+.-||.++...|+|++|...-.+++++--.
T Consensus        37 ~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~   90 (144)
T PRK15359         37 EGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDAS   90 (144)
T ss_pred             cCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC
Confidence            344788999999999999999999999999999999999999999999886433

>PRK12370 invasion protein regulator; Provisional

Probab=93.28  E-value=0.27  Score=51.21  Aligned_cols=73  Identities=16%  Similarity=0.162  Sum_probs=58.4

Q ss_pred             hhhHHHHHHHHHHhhccCCCCC------------chhHHHHHHHHHHHHhhCCCcCchHHHHHHHHhccCCcHHHHHHHH
Q 015869          311 AKEQIEARDLYWEAVCGNSDGS------------KEKLEKAEELLLRCIEKNPFVGEPHVVLGQIYLAKGEFEEAEREAG  378 (399)
Q Consensus       311 ~~dq~aArdlYWeav~~~~~~~------------~~~~d~a~~lL~~~i~~NP~VgEP~~vLAQ~~l~~gr~~eA~~~A~  378 (399)
                      ..+-..|.+.|-+++.-+.+.+            ....+.|+..+++++++||--.+-+..||++|...|++++|....+
T Consensus       317 ~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~  396 (553)
T PRK12370        317 QNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTIN  396 (553)
T ss_pred             chHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence            3445677888888876222221            1236789999999999999999999999999999999999999999


Q ss_pred             HHHHH
Q 015869          379 KGLML  383 (399)
Q Consensus       379 ~gL~l  383 (399)
                      +++++
T Consensus       397 ~Al~l  401 (553)
T PRK12370        397 ECLKL  401 (553)
T ss_pred             HHHhc
Confidence            98876

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=93.27  E-value=0.19  Score=46.06  Aligned_cols=49  Identities=12%  Similarity=0.083  Sum_probs=45.6

Q ss_pred             HHHHHHHHHHHHhhCCCcCchHHHHHHHHhccCCcHHHHHHHHHHHHHH
Q 015869          336 LEKAEELLLRCIEKNPFVGEPHVVLGQIYLAKGEFEEAEREAGKGLMLL  384 (399)
Q Consensus       336 ~d~a~~lL~~~i~~NP~VgEP~~vLAQ~~l~~gr~~eA~~~A~~gL~ll  384 (399)
                      .+.|.++|+++++++|=-.+.+..||..|...|+|++|...-++.|++.
T Consensus       126 ~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~  174 (198)
T PRK10370        126 TPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLN  174 (198)
T ss_pred             cHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence            3779999999999999999999999999999999999999988888764

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=93.06  E-value=0.26  Score=41.28  Aligned_cols=50  Identities=22%  Similarity=0.392  Sum_probs=45.0

Q ss_pred             hhHHHHHHHHHHHHhhCCCcCchHHHHHHHHhccCCcHHHHHHHHHHHHH
Q 015869          334 EKLEKAEELLLRCIEKNPFVGEPHVVLGQIYLAKGEFEEAEREAGKGLML  383 (399)
Q Consensus       334 ~~~d~a~~lL~~~i~~NP~VgEP~~vLAQ~~l~~gr~~eA~~~A~~gL~l  383 (399)
                      ...+.|...+.++++.+|-..+.+..+|++|...|++++|....++++++
T Consensus       149 g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~  198 (234)
T TIGR02521       149 GDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDARAYLERYQQT  198 (234)
T ss_pred             CCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            34788999999999999998889999999999999999999998888876

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=93.03  E-value=0.23  Score=45.51  Aligned_cols=47  Identities=26%  Similarity=0.333  Sum_probs=27.5

Q ss_pred             HHHHHHHHHHHHhhCCCcCchHHHHHHHHhccCCcHHHHHHHHHHHH
Q 015869          336 LEKAEELLLRCIEKNPFVGEPHVVLGQIYLAKGEFEEAEREAGKGLM  382 (399)
Q Consensus       336 ~d~a~~lL~~~i~~NP~VgEP~~vLAQ~~l~~gr~~eA~~~A~~gL~  382 (399)
                      .+.+...|+++++.||=-.+-++.|+++|+..|+|++|...-+++++
T Consensus        55 ~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~  101 (198)
T PRK10370         55 PEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQ  101 (198)
T ss_pred             HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            34455555666666666666666666666666666666555555554

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=92.77  E-value=0.21  Score=49.73  Aligned_cols=50  Identities=26%  Similarity=0.321  Sum_probs=46.9

Q ss_pred             hhHHHHHHHHHHHHhhCCCcCchHHHHHHHHhccCCcHHHHHHHHHHHHH
Q 015869          334 EKLEKAEELLLRCIEKNPFVGEPHVVLGQIYLAKGEFEEAEREAGKGLML  383 (399)
Q Consensus       334 ~~~d~a~~lL~~~i~~NP~VgEP~~vLAQ~~l~~gr~~eA~~~A~~gL~l  383 (399)
                      ...+.|.+++.++|+.||--.+.++.+|++|+..|+|++|...+.++|++
T Consensus        16 ~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l   65 (356)
T PLN03088         16 DDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIEL   65 (356)
T ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            34788999999999999999999999999999999999999999999886

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=92.60  E-value=0.29  Score=38.18  Aligned_cols=47  Identities=21%  Similarity=0.385  Sum_probs=27.5

Q ss_pred             HHHHHHHHHHHHhhCC---CcCchHHHHHHHHhccCCcHHHHHHHHHHHH
Q 015869          336 LEKAEELLLRCIEKNP---FVGEPHVVLGQIYLAKGEFEEAEREAGKGLM  382 (399)
Q Consensus       336 ~d~a~~lL~~~i~~NP---~VgEP~~vLAQ~~l~~gr~~eA~~~A~~gL~  382 (399)
                      .+.|.+.+.+++.+||   +..+.++.++.+|...|+|++|...-+.+++
T Consensus        18 ~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~   67 (119)
T TIGR02795        18 YADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVK   67 (119)
T ss_pred             HHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHH
Confidence            5556666666666553   3334555666666666666666666555554

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=92.07  E-value=0.29  Score=33.87  Aligned_cols=49  Identities=27%  Similarity=0.353  Sum_probs=43.7

Q ss_pred             hHHHHHHHHHHHHhhCCCcCchHHHHHHHHhccCCcHHHHHHHHHHHHH
Q 015869          335 KLEKAEELLLRCIEKNPFVGEPHVVLGQIYLAKGEFEEAEREAGKGLML  383 (399)
Q Consensus       335 ~~d~a~~lL~~~i~~NP~VgEP~~vLAQ~~l~~gr~~eA~~~A~~gL~l  383 (399)
                      ..+.|...++++++.+|-....+..+|++|...|++++|...-..++++
T Consensus        15 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~   63 (100)
T cd00189          15 DYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALEL   63 (100)
T ss_pred             cHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            3778999999999999988888999999999999999999988877764

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=91.79  E-value=0.25  Score=52.14  Aligned_cols=49  Identities=22%  Similarity=0.236  Sum_probs=44.0

Q ss_pred             hhHHHHHHHHHHHHhhCCCcCchHHHHHHHHhccCCcHHHHHHHHHHHHH
Q 015869          334 EKLEKAEELLLRCIEKNPFVGEPHVVLGQIYLAKGEFEEAEREAGKGLML  383 (399)
Q Consensus       334 ~~~d~a~~lL~~~i~~NP~VgEP~~vLAQ~~l~~gr~~eA~~~A~~gL~l  383 (399)
                      ...+.|+..+++|+++||. -+-|+.|+.+|...|++++|.+..++|++|
T Consensus       434 g~~~~A~~~l~rAl~L~ps-~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L  482 (517)
T PRK10153        434 GKTDEAYQAINKAIDLEMS-WLNYVLLGKVYELKGDNRLAADAYSTAFNL  482 (517)
T ss_pred             CCHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence            3488899999999999997 478999999999999999999999999875

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=91.40  E-value=0.33  Score=49.15  Aligned_cols=48  Identities=38%  Similarity=0.553  Sum_probs=44.0

Q ss_pred             hHHHHHHHHHHHHhhCCCcCchHHHHHHHHhccCCcHHHHHHHHHHHH
Q 015869          335 KLEKAEELLLRCIEKNPFVGEPHVVLGQIYLAKGEFEEAEREAGKGLM  382 (399)
Q Consensus       335 ~~d~a~~lL~~~i~~NP~VgEP~~vLAQ~~l~~gr~~eA~~~A~~gL~  382 (399)
                      ..+.|...++++++++|...+-+..||++|+..|+|++|...-+++++
T Consensus        37 ~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~   84 (899)
T TIGR02917        37 KYKAAIIQLKNALQKDPNDAEARFLLGKIYLALGDYAAAEKELRKALS   84 (899)
T ss_pred             ChHhHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            478899999999999999999999999999999999999998877765

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=91.20  E-value=0.3  Score=55.50  Aligned_cols=67  Identities=12%  Similarity=-0.071  Sum_probs=54.9

Q ss_pred             HHHHHHHHHHhhccCCCCCchhHHHHHHHHHHHHhhCCCcCchHHHHHHHHhccCCcHHHHHHHHHHHHH
Q 015869          314 QIEARDLYWEAVCGNSDGSKEKLEKAEELLLRCIEKNPFVGEPHVVLGQIYLAKGEFEEAEREAGKGLML  383 (399)
Q Consensus       314 q~aArdlYWeav~~~~~~~~~~~d~a~~lL~~~i~~NP~VgEP~~vLAQ~~l~~gr~~eA~~~A~~gL~l  383 (399)
                      +-...-+|=+++.   ...+.+.+.|..++++|++.+|=-.+-++.||++|+..|++++|+..+++++++
T Consensus        41 ~~~~~~~f~~a~~---~~~~Gd~~~A~~~l~~Al~~dP~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~l  107 (987)
T PRK09782         41 HFVIYPRLDKALK---AQKNNDEATAIREFEYIHQQVPDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKR  107 (987)
T ss_pred             HHHHHHHHHHHHH---HHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence            3344455556655   223344778999999999999999999999999999999999999999999875

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=90.75  E-value=0.53  Score=44.80  Aligned_cols=49  Identities=22%  Similarity=0.382  Sum_probs=41.3

Q ss_pred             hHHHHHHHHHHHHhhCCCcCchHHHHHHHHhccCCcHHHHHHHHHHHHH
Q 015869          335 KLEKAEELLLRCIEKNPFVGEPHVVLGQIYLAKGEFEEAEREAGKGLML  383 (399)
Q Consensus       335 ~~d~a~~lL~~~i~~NP~VgEP~~vLAQ~~l~~gr~~eA~~~A~~gL~l  383 (399)
                      ..+.|.+.++++++.+|-..+.++.|+++|+..|++++|....+++++.
T Consensus       195 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~  243 (389)
T PRK11788        195 DLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQ  243 (389)
T ss_pred             CHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence            4778888899999888888888889999999999999988887777653

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=90.69  E-value=0.57  Score=47.49  Aligned_cols=48  Identities=25%  Similarity=0.262  Sum_probs=31.8

Q ss_pred             hHHHHHHHHHHHHhhCCCcCchHHHHHHHHhccCCcHHHHHHHHHHHH
Q 015869          335 KLEKAEELLLRCIEKNPFVGEPHVVLGQIYLAKGEFEEAEREAGKGLM  382 (399)
Q Consensus       335 ~~d~a~~lL~~~i~~NP~VgEP~~vLAQ~~l~~gr~~eA~~~A~~gL~  382 (399)
                      ..++|...++++++.+|--.+..+.+|++|+..|+|++|....+++++
T Consensus       140 ~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~  187 (899)
T TIGR02917       140 QLELAQKSYEQALAIDPRSLYAKLGLAQLALAENRFDEARALIDEVLT  187 (899)
T ss_pred             CHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            356666677777766666666666667777777777666666665554

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=90.45  E-value=0.51  Score=44.46  Aligned_cols=47  Identities=21%  Similarity=0.162  Sum_probs=28.1

Q ss_pred             HHHHHHHHHHHHhhCCCcCchHHHHHHHHhccCCcHHHHHHHHHHHH
Q 015869          336 LEKAEELLLRCIEKNPFVGEPHVVLGQIYLAKGEFEEAEREAGKGLM  382 (399)
Q Consensus       336 ~d~a~~lL~~~i~~NP~VgEP~~vLAQ~~l~~gr~~eA~~~A~~gL~  382 (399)
                      .+.|++.+++++++||=....+..||++|...|++++|+...+++++
T Consensus       130 ~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~  176 (355)
T cd05804         130 YDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRD  176 (355)
T ss_pred             HHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhh
Confidence            45566666666666666555556666666666666666665555554

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=90.25  E-value=0.97  Score=38.11  Aligned_cols=56  Identities=29%  Similarity=0.255  Sum_probs=47.1

Q ss_pred             hHHHHHHHHHHHHhhCCCcCchHHHHHHHHhccCCcHHHHHHHHHHHHHHH-hhCCC
Q 015869          335 KLEKAEELLLRCIEKNPFVGEPHVVLGQIYLAKGEFEEAEREAGKGLMLLL-EWGSP  390 (399)
Q Consensus       335 ~~d~a~~lL~~~i~~NP~VgEP~~vLAQ~~l~~gr~~eA~~~A~~gL~ll~-~WG~~  390 (399)
                      ..+.|..+++++|..+|+--+.|..|-++|...|++.+|.+.=++--+.|. +.|..
T Consensus        77 ~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~  133 (146)
T PF03704_consen   77 DYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIE  133 (146)
T ss_dssp             -HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS--
T ss_pred             CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcC
Confidence            378899999999999999999999999999999999999999888888777 46653

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=89.74  E-value=0.53  Score=44.81  Aligned_cols=46  Identities=28%  Similarity=0.444  Sum_probs=32.8

Q ss_pred             HHHHHHHHHHHHhhCCCcCchHHHHHHHHhccCCcHHHHHHHHHHH
Q 015869          336 LEKAEELLLRCIEKNPFVGEPHVVLGQIYLAKGEFEEAEREAGKGL  381 (399)
Q Consensus       336 ~d~a~~lL~~~i~~NP~VgEP~~vLAQ~~l~~gr~~eA~~~A~~gL  381 (399)
                      .+.|.+.++++++.||-..+.+..|+.+|...|++++|....+.++
T Consensus        51 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l   96 (389)
T PRK11788         51 PDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLL   96 (389)
T ss_pred             hHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHh
Confidence            5667777777777777766777777777777777777776655544

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=89.55  E-value=0.97  Score=39.19  Aligned_cols=51  Identities=24%  Similarity=0.273  Sum_probs=43.8

Q ss_pred             hhHHHHHHHHHHHHhhCCCcCchHHHHHHHHh-------ccCCcHHHHHHHHHHHHHH
Q 015869          334 EKLEKAEELLLRCIEKNPFVGEPHVVLGQIYL-------AKGEFEEAEREAGKGLMLL  384 (399)
Q Consensus       334 ~~~d~a~~lL~~~i~~NP~VgEP~~vLAQ~~l-------~~gr~~eA~~~A~~gL~ll  384 (399)
                      ...+.|...++++++.+|..++.+..++.+|.       ..|++++|..-..+|+..+
T Consensus        86 g~~~eA~~~~~~Al~~~~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~  143 (168)
T CHL00033         86 GEHTKALEYYFQALERNPFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYW  143 (168)
T ss_pred             CCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHH
Confidence            34788999999999999999999999999999       7788888877777776653

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=89.14  E-value=0.63  Score=29.86  Aligned_cols=29  Identities=41%  Similarity=0.492  Sum_probs=24.8

Q ss_pred             chHHHHHHHHhccCCcHHHHHHHHHHHHH
Q 015869          355 EPHVVLGQIYLAKGEFEEAEREAGKGLML  383 (399)
Q Consensus       355 EP~~vLAQ~~l~~gr~~eA~~~A~~gL~l  383 (399)
                      |-+.-||++|...|+|++|.+.-++++++
T Consensus         2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l   30 (34)
T PF07719_consen    2 EAWYYLGQAYYQLGNYEEAIEYFEKALEL   30 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence            34667999999999999999999999876

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=88.89  E-value=2  Score=37.40  Aligned_cols=71  Identities=24%  Similarity=0.203  Sum_probs=55.1

Q ss_pred             hhhHHHHHHHHHHhhccCCCCC---------------chhHHHHHHHHHHHHhhCCC---cCchHHHHHHHHhccCCcHH
Q 015869          311 AKEQIEARDLYWEAVCGNSDGS---------------KEKLEKAEELLLRCIEKNPF---VGEPHVVLGQIYLAKGEFEE  372 (399)
Q Consensus       311 ~~dq~aArdlYWeav~~~~~~~---------------~~~~d~a~~lL~~~i~~NP~---VgEP~~vLAQ~~l~~gr~~e  372 (399)
                      .+++..|-.+|-+++....+.+               ....|.|..+|+++++..|=   .+.-++.+|-.+.+.||++|
T Consensus        14 ~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~~gr~~e   93 (120)
T PF12688_consen   14 LGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALYNLGRPKE   93 (120)
T ss_pred             cCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHHCCCHHH
Confidence            3567788888888887322221               12378899999999998554   99999999999999999999


Q ss_pred             HHHHHHHHH
Q 015869          373 AEREAGKGL  381 (399)
Q Consensus       373 A~~~A~~gL  381 (399)
                      |.......|
T Consensus        94 Al~~~l~~l  102 (120)
T PF12688_consen   94 ALEWLLEAL  102 (120)
T ss_pred             HHHHHHHHH
Confidence            988776554

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=88.62  E-value=0.65  Score=49.41  Aligned_cols=48  Identities=27%  Similarity=0.319  Sum_probs=44.4

Q ss_pred             HHHHHHHHHHHHhhCCCcCchHHHHHHHHhccCCcHHHHHHHHHHHHH
Q 015869          336 LEKAEELLLRCIEKNPFVGEPHVVLGQIYLAKGEFEEAEREAGKGLML  383 (399)
Q Consensus       336 ~d~a~~lL~~~i~~NP~VgEP~~vLAQ~~l~~gr~~eA~~~A~~gL~l  383 (399)
                      .++|-+.+.+||+|+|.+-|=+++-|.||-++|++++|.+..+.|-.|
T Consensus       210 ~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~L  257 (517)
T PF12569_consen  210 YEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEAREL  257 (517)
T ss_pred             HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhC
Confidence            678999999999999999999999999999999999999988877543

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=88.56  E-value=0.67  Score=32.58  Aligned_cols=28  Identities=32%  Similarity=0.436  Sum_probs=25.6

Q ss_pred             hHHHHHHHHhccCCcHHHHHHHHHHHHH
Q 015869          356 PHVVLGQIYLAKGEFEEAEREAGKGLML  383 (399)
Q Consensus       356 P~~vLAQ~~l~~gr~~eA~~~A~~gL~l  383 (399)
                      -++-||++|...|++++|++.-+++|++
T Consensus         3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~   30 (44)
T PF13428_consen    3 AWLALARAYRRLGQPDEAERLLRRALAL   30 (44)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            4678999999999999999999999875

>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models

Probab=88.36  E-value=0.44  Score=30.74  Aligned_cols=23  Identities=35%  Similarity=0.485  Sum_probs=20.6

Q ss_pred             hHHHHHHHHhccCCcHHHHHHHH
Q 015869          356 PHVVLGQIYLAKGEFEEAEREAG  378 (399)
Q Consensus       356 P~~vLAQ~~l~~gr~~eA~~~A~  378 (399)
                      .++.||++|+..|++++|++..+
T Consensus         3 a~~~la~~~~~~G~~~eA~~~l~   25 (26)
T PF07721_consen    3 ARLALARALLAQGDPDEAERLLR   25 (26)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHh
Confidence            46889999999999999998765

The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=88.21  E-value=1.2  Score=39.05  Aligned_cols=49  Identities=20%  Similarity=0.152  Sum_probs=32.8

Q ss_pred             hHHHHHHHHHHHHhhCCC---cCchHHHHHHHHhccCCcHHHHHHHHHHHHH
Q 015869          335 KLEKAEELLLRCIEKNPF---VGEPHVVLGQIYLAKGEFEEAEREAGKGLML  383 (399)
Q Consensus       335 ~~d~a~~lL~~~i~~NP~---VgEP~~vLAQ~~l~~gr~~eA~~~A~~gL~l  383 (399)
                      ..+.|...++++++.+|=   .+.-+..||++|...|+|++|.....++++.
T Consensus        50 ~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  101 (172)
T PRK02603         50 EYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALEL  101 (172)
T ss_pred             CHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            366677777777765442   2345667777777777777777777776664

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=87.68  E-value=1  Score=40.86  Aligned_cols=68  Identities=22%  Similarity=0.260  Sum_probs=56.2

Q ss_pred             hHHHHHHHHHHhhccCCCCCchhHHHHHHHHHHHHhh---CCCcCchHHHHHHHHhccCCcHHHHHHHHHHHHH
Q 015869          313 EQIEARDLYWEAVCGNSDGSKEKLEKAEELLLRCIEK---NPFVGEPHVVLGQIYLAKGEFEEAEREAGKGLML  383 (399)
Q Consensus       313 dq~aArdlYWeav~~~~~~~~~~~d~a~~lL~~~i~~---NP~VgEP~~vLAQ~~l~~gr~~eA~~~A~~gL~l  383 (399)
                      .+..+.+||+++..   .-.....+.|++.|+..-..   +|+.-.=++-|+-.|...|+|++|..++++=++|
T Consensus         6 ~~~~~~~ly~~a~~---~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirL   76 (142)
T PF13512_consen    6 PDKSPQELYQEAQE---ALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRL   76 (142)
T ss_pred             CCCCHHHHHHHHHH---HHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence            45678899999987   33445588999999999888   5566678889999999999999999999987665

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=87.33  E-value=0.4  Score=37.13  Aligned_cols=56  Identities=34%  Similarity=0.436  Sum_probs=40.4

Q ss_pred             HHHHhhccCCCCCchhHHHHHHHHHHHHhhCCCcCchHHHHHHHHhccCCcHHHHHHHHH
Q 015869          320 LYWEAVCGNSDGSKEKLEKAEELLLRCIEKNPFVGEPHVVLGQIYLAKGEFEEAEREAGK  379 (399)
Q Consensus       320 lYWeav~~~~~~~~~~~d~a~~lL~~~i~~NP~VgEP~~vLAQ~~l~~gr~~eA~~~A~~  379 (399)
                      +|+-+-|   =-.....++|.+++++ ...||=-.+-+.++||+|+..|+|+||...=++
T Consensus        28 ~~~la~~---~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~l~~   83 (84)
T PF12895_consen   28 LYNLAQC---YFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKALEK   83 (84)
T ss_dssp             HHHHHHH---HHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred             HHHHHHH---HHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHhc
Confidence            3444666   2233447889999988 777886677888889999999999999876544

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=86.99  E-value=1.2  Score=46.72  Aligned_cols=52  Identities=19%  Similarity=0.252  Sum_probs=45.6

Q ss_pred             hhHHHHHHHHHHHHhhCCCcCchHHHHHHHHhccCCcHHHHHHHHHHHHHHH
Q 015869          334 EKLEKAEELLLRCIEKNPFVGEPHVVLGQIYLAKGEFEEAEREAGKGLMLLL  385 (399)
Q Consensus       334 ~~~d~a~~lL~~~i~~NP~VgEP~~vLAQ~~l~~gr~~eA~~~A~~gL~ll~  385 (399)
                      ...+.|+.+++++++++|-...-+.-|||+|+..|++++|...-++++++.-
T Consensus       522 ~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~  573 (615)
T TIGR00990       522 QDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAELAR  573 (615)
T ss_pred             hhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhc
Confidence            3477899999999999997777788899999999999999999999887743

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=86.76  E-value=1.3  Score=40.44  Aligned_cols=67  Identities=24%  Similarity=0.379  Sum_probs=51.9

Q ss_pred             HHHHHHHHHHhhccCCCCCchhHHHHHHHHHHHHhhCC---CcCchHHHHHHHHhccCCcHHHHHHHHHHHHH
Q 015869          314 QIEARDLYWEAVCGNSDGSKEKLEKAEELLLRCIEKNP---FVGEPHVVLGQIYLAKGEFEEAEREAGKGLML  383 (399)
Q Consensus       314 q~aArdlYWeav~~~~~~~~~~~d~a~~lL~~~i~~NP---~VgEP~~vLAQ~~l~~gr~~eA~~~A~~gL~l  383 (399)
                      |.-+.++|..+..   .-...+.+.|.+++.+.+...|   ++.+=.+-||..|...|+|++|....++=++.
T Consensus         2 ~~~~~~lY~~a~~---~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~   71 (203)
T PF13525_consen    2 EDTAEALYQKALE---ALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL   71 (203)
T ss_dssp             ---HHHHHHHHHH---HHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHH---HHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            4567899999987   3344558899999999999855   78888999999999999999999988876553

>PRK11189 lipoprotein NlpI; Provisional

Probab=86.70  E-value=1.4  Score=42.24  Aligned_cols=50  Identities=16%  Similarity=0.082  Sum_probs=44.2

Q ss_pred             hhHHHHHHHHHHHHhhCCCcCchHHHHHHHHhccCCcHHHHHHHHHHHHH
Q 015869          334 EKLEKAEELLLRCIEKNPFVGEPHVVLGQIYLAKGEFEEAEREAGKGLML  383 (399)
Q Consensus       334 ~~~d~a~~lL~~~i~~NP~VgEP~~vLAQ~~l~~gr~~eA~~~A~~gL~l  383 (399)
                      ...+.|.+.+.+++++||=-..-+.-++.+|...|++++|....++++++
T Consensus       112 g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~  161 (296)
T PRK11189        112 GNFDAAYEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD  161 (296)
T ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence            34788999999999999998889999999999999999999888888775

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=86.59  E-value=1.1  Score=44.51  Aligned_cols=49  Identities=27%  Similarity=0.294  Sum_probs=46.2

Q ss_pred             HHHHHHHHHHHHhhCCCcCchHHHHHHHHhccCCcHHHHHHHHHHHHHH
Q 015869          336 LEKAEELLLRCIEKNPFVGEPHVVLGQIYLAKGEFEEAEREAGKGLMLL  384 (399)
Q Consensus       336 ~d~a~~lL~~~i~~NP~VgEP~~vLAQ~~l~~gr~~eA~~~A~~gL~ll  384 (399)
                      ...|+..++++.+++|=-+|++..|+-+|.+.||+++|+..=-.+++|.
T Consensus       116 ~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~  164 (257)
T COG5010         116 FGEAVSVLRKAARLAPTDWEAWNLLGAALDQLGRFDEARRAYRQALELA  164 (257)
T ss_pred             hHHHHHHHHHHhccCCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhc
Confidence            5569999999999999999999999999999999999999999999875

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=86.59  E-value=1.3  Score=46.28  Aligned_cols=48  Identities=27%  Similarity=0.284  Sum_probs=32.0

Q ss_pred             HHHHHHHHHHHHhhCCCcCchHHHHHHHHhccCCcHHHHHHHHHHHHH
Q 015869          336 LEKAEELLLRCIEKNPFVGEPHVVLGQIYLAKGEFEEAEREAGKGLML  383 (399)
Q Consensus       336 ~d~a~~lL~~~i~~NP~VgEP~~vLAQ~~l~~gr~~eA~~~A~~gL~l  383 (399)
                      .+.|...++++++.||-..+.++-+|++|+..|++++|...-+++|++
T Consensus       347 ~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~  394 (615)
T TIGR00990       347 HLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKL  394 (615)
T ss_pred             HHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence            556666666666666666666666666666666666666666666554

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=86.17  E-value=1.5  Score=49.88  Aligned_cols=59  Identities=17%  Similarity=0.124  Sum_probs=51.1

Q ss_pred             HHHHhhccCCCCCchhHHHHHHHHHHHHhhCCCcCchHHHHHHHHhccCCcHHHHHHHHHHHH
Q 015869          320 LYWEAVCGNSDGSKEKLEKAEELLLRCIEKNPFVGEPHVVLGQIYLAKGEFEEAEREAGKGLM  382 (399)
Q Consensus       320 lYWeav~~~~~~~~~~~d~a~~lL~~~i~~NP~VgEP~~vLAQ~~l~~gr~~eA~~~A~~gL~  382 (399)
                      .||..+.  .  .....+.|.+.|++.++.||-..+-++.||++|+..|+++||...-++.++
T Consensus       151 ~y~~~~~--~--~~g~~~~A~~~L~~ll~~~P~~~~~~~~LA~ll~~~g~~~eAl~~l~~~~~  209 (1157)
T PRK11447        151 EYWRLVA--K--LPAQRPEAINQLQRLNADYPGNTGLRNTLALLLFSSGRRDEGFAVLEQMAK  209 (1157)
T ss_pred             HHHHHHh--h--CCccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhh
Confidence            6999987  2  234478899999999999999999999999999999999999998777643

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=86.13  E-value=2.2  Score=48.60  Aligned_cols=50  Identities=22%  Similarity=0.303  Sum_probs=45.9

Q ss_pred             hhHHHHHHHHHHHHhhCCCcCchHHHHHHHHhccCCcHHHHHHHHHHHHH
Q 015869          334 EKLEKAEELLLRCIEKNPFVGEPHVVLGQIYLAKGEFEEAEREAGKGLML  383 (399)
Q Consensus       334 ~~~d~a~~lL~~~i~~NP~VgEP~~vLAQ~~l~~gr~~eA~~~A~~gL~l  383 (399)
                      ...+.|++.++++++.+|--.+.++.||++|...|++++|++.-+++|++
T Consensus       365 g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~  414 (1157)
T PRK11447        365 NNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRM  414 (1157)
T ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence            34788999999999999998889999999999999999999999888865

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=85.67  E-value=3  Score=32.47  Aligned_cols=65  Identities=18%  Similarity=0.239  Sum_probs=49.8

Q ss_pred             HHHHHHHHhhccCCCCCchhHHHHHHHHHHHHhhCC---CcCchHHHHHHHHhccCCcHHHHHHHHHHHHH
Q 015869          316 EARDLYWEAVCGNSDGSKEKLEKAEELLLRCIEKNP---FVGEPHVVLGQIYLAKGEFEEAEREAGKGLML  383 (399)
Q Consensus       316 aArdlYWeav~~~~~~~~~~~d~a~~lL~~~i~~NP---~VgEP~~vLAQ~~l~~gr~~eA~~~A~~gL~l  383 (399)
                      .+...|+-+.+   -......+.|..++++++..+|   +..+=+.-++++|...|++++|...-.+.++.
T Consensus        38 ~~~~~~~l~~~---~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~  105 (119)
T TIGR02795        38 APNAHYWLGEA---YYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMSLQELGDKEKAKATLQQVIKR  105 (119)
T ss_pred             cHHHHHHHHHH---HHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHHHHHhCChHHHHHHHHHHHHH
Confidence            34455666665   3344458889999999999854   45666888999999999999999988877765

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=85.11  E-value=1.8  Score=46.02  Aligned_cols=50  Identities=16%  Similarity=0.003  Sum_probs=46.4

Q ss_pred             hhHHHHHHHHHHHHhhCCCcCch---HHHHHHHHhccCCcHHHHHHHHHHHHH
Q 015869          334 EKLEKAEELLLRCIEKNPFVGEP---HVVLGQIYLAKGEFEEAEREAGKGLML  383 (399)
Q Consensus       334 ~~~d~a~~lL~~~i~~NP~VgEP---~~vLAQ~~l~~gr~~eA~~~A~~gL~l  383 (399)
                      ...+.|...++++|+.||--.|-   |.-||-+|...|+++||...-++++++
T Consensus        89 GryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel  141 (453)
T PLN03098         89 GRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD  141 (453)
T ss_pred             CCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            44889999999999999998865   999999999999999999999999987

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=84.05  E-value=1.3  Score=45.85  Aligned_cols=42  Identities=29%  Similarity=0.329  Sum_probs=37.9

Q ss_pred             HHHHHHHHHHHHhhCCCcCchHHHHHHHHhccCCcHHHHHHH
Q 015869          336 LEKAEELLLRCIEKNPFVGEPHVVLGQIYLAKGEFEEAEREA  377 (399)
Q Consensus       336 ~d~a~~lL~~~i~~NP~VgEP~~vLAQ~~l~~gr~~eA~~~A  377 (399)
                      .+.|.+++++|++..|--.+++.-||++|...|+|++|....
T Consensus       250 ~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaL  291 (395)
T PF09295_consen  250 YELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLAL  291 (395)
T ss_pred             HHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHH
Confidence            578999999999999999999999999999999999997543

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=83.90  E-value=1.5  Score=28.93  Aligned_cols=28  Identities=29%  Similarity=0.305  Sum_probs=23.2

Q ss_pred             HHHHHHHhccCCcHHHHHHHHHHHHHHH
Q 015869          358 VVLGQIYLAKGEFEEAEREAGKGLMLLL  385 (399)
Q Consensus       358 ~vLAQ~~l~~gr~~eA~~~A~~gL~ll~  385 (399)
                      .-||.+|...|+|++|+.-.++++....
T Consensus         6 ~~la~~~~~~g~~~~A~~~~~~al~~~~   33 (42)
T PF13374_consen    6 NNLANAYRAQGRYEEALELLEEALEIRE   33 (42)
T ss_dssp             HHHHHHHHHCT-HHHHHHHHHHHHHHH-
T ss_pred             HHHHHHHHhhhhcchhhHHHHHHHHHHH
Confidence            3589999999999999999999988654

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=83.38  E-value=1.8  Score=49.38  Aligned_cols=74  Identities=18%  Similarity=0.108  Sum_probs=54.7

Q ss_pred             CChhhHHHHHHHHHHhhccCCCC---------Cc---hhHHHHHHHHHHHHhhCCCcCchHHHHHHHHhccCCcHHHHHH
Q 015869          309 LDAKEQIEARDLYWEAVCGNSDG---------SK---EKLEKAEELLLRCIEKNPFVGEPHVVLGQIYLAKGEFEEAERE  376 (399)
Q Consensus       309 L~~~dq~aArdlYWeav~~~~~~---------~~---~~~d~a~~lL~~~i~~NP~VgEP~~vLAQ~~l~~gr~~eA~~~  376 (399)
                      +..++-.+|...|=+++..+.+.         ..   ...+.|...+++++++||- .+.+.-||++|...|++++|+..
T Consensus       553 l~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~P~-~~a~~~LA~~l~~lG~~deA~~~  631 (987)
T PRK09782        553 QAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLNIAPS-ANAYVARATIYRQRHNVPAAVSD  631 (987)
T ss_pred             HHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHCCCHHHHHHH
Confidence            34455566666665555421111         01   3377899999999999997 88999999999999999999999


Q ss_pred             HHHHHHH
Q 015869          377 AGKGLML  383 (399)
Q Consensus       377 A~~gL~l  383 (399)
                      .++++.+
T Consensus       632 l~~AL~l  638 (987)
T PRK09782        632 LRAALEL  638 (987)
T ss_pred             HHHHHHh
Confidence            9888875

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=83.22  E-value=2.9  Score=44.99  Aligned_cols=48  Identities=8%  Similarity=0.147  Sum_probs=33.5

Q ss_pred             HHHHHHHHHHHHhhCCCcCchHHHHHHHHhccCCcHHHHHHHHHHHHH
Q 015869          336 LEKAEELLLRCIEKNPFVGEPHVVLGQIYLAKGEFEEAEREAGKGLML  383 (399)
Q Consensus       336 ~d~a~~lL~~~i~~NP~VgEP~~vLAQ~~l~~gr~~eA~~~A~~gL~l  383 (399)
                      .+.|.+.++++++.||=-.+.+..||.+|...|++++|....++++++
T Consensus        92 ~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l  139 (656)
T PRK15174         92 PDAVLQVVNKLLAVNVCQPEDVLLVASVLLKSKQYATVADLAEQAWLA  139 (656)
T ss_pred             HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            566777777777777777777777777777777777777666666654

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=83.12  E-value=2.5  Score=31.86  Aligned_cols=50  Identities=22%  Similarity=0.357  Sum_probs=38.7

Q ss_pred             hHHHHHHHHHHHHhhC-------CCcCchHHHHHHHHhccCCcHHHHHHHHHHHHHH
Q 015869          335 KLEKAEELLLRCIEKN-------PFVGEPHVVLGQIYLAKGEFEEAEREAGKGLMLL  384 (399)
Q Consensus       335 ~~d~a~~lL~~~i~~N-------P~VgEP~~vLAQ~~l~~gr~~eA~~~A~~gL~ll  384 (399)
                      ..+.|.+.+++|+...       |.++.=..-||++|...|++++|+..-++++++.
T Consensus        20 ~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i~   76 (78)
T PF13424_consen   20 RYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDIF   76 (78)
T ss_dssp             -HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence            4777888888888662       3344444458899999999999999999999875

...

>PRK11906 transcriptional regulator; Provisional

Probab=83.01  E-value=3.4  Score=44.02  Aligned_cols=74  Identities=12%  Similarity=-0.038  Sum_probs=61.1

Q ss_pred             ChhhHHHHHHHHHHhhccCCCCC------------chhHHHHHHHHHHHHhhCCCcCchHHHHHHHHhccCCcHHHHHHH
Q 015869          310 DAKEQIEARDLYWEAVCGNSDGS------------KEKLEKAEELLLRCIEKNPFVGEPHVVLGQIYLAKGEFEEAEREA  377 (399)
Q Consensus       310 ~~~dq~aArdlYWeav~~~~~~~------------~~~~d~a~~lL~~~i~~NP~VgEP~~vLAQ~~l~~gr~~eA~~~A  377 (399)
                      .+.+..+|+.+=+.||--+.+.+            ..+.+.+..++++|+++||=-.-=+..+|.+++-+|+.++|.++.
T Consensus       316 ~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i  395 (458)
T PRK11906        316 LELAAQKALELLDYVSDITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICI  395 (458)
T ss_pred             chHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            46788889999999986222221            123678999999999999999999999999999999999999999


Q ss_pred             HHHHHH
Q 015869          378 GKGLML  383 (399)
Q Consensus       378 ~~gL~l  383 (399)
                      ++||+|
T Consensus       396 ~~alrL  401 (458)
T PRK11906        396 DKSLQL  401 (458)
T ss_pred             HHHhcc
Confidence            999875

>TIGR03276 Phn-HD phosphonate degradation operons associated HDIG domain protein

Probab=82.74  E-value=4.4  Score=38.16  Aligned_cols=94  Identities=18%  Similarity=0.177  Sum_probs=64.8

Q ss_pred             chhHHHHHHHhCCCccccCCCChHhhHHHHHHHHHhcCCchHHHHhccchhc---ccCcc-cc-ccCCCCCc---chHHH
Q 015869           35 LPSLIAVLRSVGAGECWHKHGSFLEHLVDIYRILKIWKAPDCVCLCGLFHSA---YSNSY-VN-LAIFDPNT---GRDVV  106 (399)
Q Consensus        35 Lp~ll~~Lr~~GAge~~Hk~GTf~~HL~~V~~iL~~Wgap~~V~~AGLfHSa---YGt~~-f~-laifdp~~---~R~~v  106 (399)
                      +..+..++...|+....=-.=|-+.|.+.|.-+-..-|+++++..|+|+|=+   ....+ -+ ...-+.+.   ..+.|
T Consensus         4 ~~~i~~l~~~~g~~~y~Ge~Vs~leH~LQ~A~lA~~~Gad~elvvAALLHDIGhll~~~~~~~~~~g~~~~He~iga~~L   83 (179)
T TIGR03276         4 LDEIFALFDEHGARQYGGEAVSQLEHALQCAQLAEAAGADDELIVAAFLHDIGHLLADEGATPMGRGGDDHHEELAADYL   83 (179)
T ss_pred             HHHHHHHHHhcCccccCCCCCcHHHHHHHHHHHHHHcCCCHHHHHHHHHHhcchhhhcccccccccCCCccHHHHHHHHH
Confidence            4567888999998864322228899999999999999999999999999987   21100 00 01112222   36889


Q ss_pred             HHhhchhhhHHhhhhccccCchh
Q 015869          107 RGHVGDAAEKLIHLFCIVPRQPL  129 (399)
Q Consensus       107 r~lIG~~AE~LVylfct~dR~~l  129 (399)
                      +..+|+..=.+|-+ ++..+..|
T Consensus        84 r~~F~~~V~~lV~~-Hv~aKryl  105 (179)
T TIGR03276        84 RELFSPSVTEPIRL-HVQAKRYL  105 (179)
T ss_pred             HHHcCHHHHHHHHH-HHHHHHHH
Confidence            99999999999863 33333333

This small clade of proteins are found adjacent to other genes implicated in the catabolism of phosphonates. They are members of the TIGR00277 domain family and contain a series of five invariant histidines (the domain in general has only four).

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=82.32  E-value=2.4  Score=27.40  Aligned_cols=29  Identities=41%  Similarity=0.492  Sum_probs=25.9

Q ss_pred             chHHHHHHHHhccCCcHHHHHHHHHHHHH
Q 015869          355 EPHVVLGQIYLAKGEFEEAEREAGKGLML  383 (399)
Q Consensus       355 EP~~vLAQ~~l~~gr~~eA~~~A~~gL~l  383 (399)
                      +-+..+|++|...|++++|...-++++++
T Consensus         2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~   30 (34)
T PF13181_consen    2 EAYYNLGKIYEQLGDYEEALEYFEKALEL   30 (34)
T ss_dssp             HHHHHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            45788999999999999999999998875

...

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=82.16  E-value=2.4  Score=45.54  Aligned_cols=48  Identities=19%  Similarity=0.159  Sum_probs=40.0

Q ss_pred             hHHHHHHHHHHHHhhCCCcCchHHHHHHHHhccCCcHHHHHHHHHHHH
Q 015869          335 KLEKAEELLLRCIEKNPFVGEPHVVLGQIYLAKGEFEEAEREAGKGLM  382 (399)
Q Consensus       335 ~~d~a~~lL~~~i~~NP~VgEP~~vLAQ~~l~~gr~~eA~~~A~~gL~  382 (399)
                      ..+.|...++++++.+|-..+-+..|+++|...|+|++|....++.++
T Consensus       299 ~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~  346 (656)
T PRK15174        299 QNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAR  346 (656)
T ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            367888888888888888888888888888888888888888776664

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=81.65  E-value=4.2  Score=35.27  Aligned_cols=51  Identities=14%  Similarity=0.049  Sum_probs=42.1

Q ss_pred             chhHHHHHHHHHHHHhhCC--C-cCchHHHHHHHHhccCCcHHHHHHHHHHHHH
Q 015869          333 KEKLEKAEELLLRCIEKNP--F-VGEPHVVLGQIYLAKGEFEEAEREAGKGLML  383 (399)
Q Consensus       333 ~~~~d~a~~lL~~~i~~NP--~-VgEP~~vLAQ~~l~~gr~~eA~~~A~~gL~l  383 (399)
                      ....+.|...+++++..+|  . ...=+.-||.+|...|++++|....++++++
T Consensus        48 ~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~  101 (168)
T CHL00033         48 EGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALER  101 (168)
T ss_pred             cCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            3448899999999998854  2 2334678999999999999999999999976

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=81.07  E-value=2.9  Score=45.62  Aligned_cols=48  Identities=15%  Similarity=0.140  Sum_probs=41.0

Q ss_pred             hHHHHHHHHHHHHhhCCCcCchHHHHHHHHhccCCcHHHHHHHHHHHHH
Q 015869          335 KLEKAEELLLRCIEKNPFVGEPHVVLGQIYLAKGEFEEAEREAGKGLML  383 (399)
Q Consensus       335 ~~d~a~~lL~~~i~~NP~VgEP~~vLAQ~~l~~gr~~eA~~~A~~gL~l  383 (399)
                      ..+.|...|+++++++|=-.+ +..||++|..+|++++|....++++++
T Consensus        98 ~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~  145 (765)
T PRK10049         98 QYDEALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALPR  145 (765)
T ss_pred             CHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence            367788889999999998888 889999999999999998888887764

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=80.93  E-value=2.3  Score=46.92  Aligned_cols=48  Identities=8%  Similarity=-0.033  Sum_probs=43.3

Q ss_pred             HHHHHHHHHHHHhhCCCcCchHHHHHHHHhccCCcHHHHHHHHHHHHH
Q 015869          336 LEKAEELLLRCIEKNPFVGEPHVVLGQIYLAKGEFEEAEREAGKGLML  383 (399)
Q Consensus       336 ~d~a~~lL~~~i~~NP~VgEP~~vLAQ~~l~~gr~~eA~~~A~~gL~l  383 (399)
                      .|.|+++|+++++..|---.=++.+|+++...+++|||..++++.|+.
T Consensus       102 ~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~  149 (694)
T PRK15179        102 SDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSG  149 (694)
T ss_pred             cHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhc
Confidence            678999999999999999999999999999999999999999988763

>smart00028 TPR Tetratricopeptide repeats

Probab=80.56  E-value=2.2  Score=24.38  Aligned_cols=29  Identities=38%  Similarity=0.497  Sum_probs=24.9

Q ss_pred             chHHHHHHHHhccCCcHHHHHHHHHHHHH
Q 015869          355 EPHVVLGQIYLAKGEFEEAEREAGKGLML  383 (399)
Q Consensus       355 EP~~vLAQ~~l~~gr~~eA~~~A~~gL~l  383 (399)
                      +.+..+|.+|...|++++|......++++
T Consensus         2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~   30 (34)
T smart00028        2 EALYNLGNAYLKLGDYDEALEYYEKALEL   30 (34)
T ss_pred             hHHHHHHHHHHHHhhHHHHHHHHHHHHcc
Confidence            34678999999999999999998888764

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=80.50  E-value=1.9  Score=36.77  Aligned_cols=46  Identities=30%  Similarity=0.501  Sum_probs=37.1

Q ss_pred             hhHHHHHHHHHHHHhhCCCcCchHHHHHHHHhccCCcHHHHHHHHHH
Q 015869          334 EKLEKAEELLLRCIEKNPFVGEPHVVLGQIYLAKGEFEEAEREAGKG  380 (399)
Q Consensus       334 ~~~d~a~~lL~~~i~~NP~VgEP~~vLAQ~~l~~gr~~eA~~~A~~g  380 (399)
                      ...|.|..+|.+ +..+||-+.=+.+++.||+..|++++|...=+.|
T Consensus        99 ~~~d~Al~~L~~-~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A  144 (145)
T PF09976_consen   99 GQYDEALATLQQ-IPDEAFKALAAELLGDIYLAQGDYDEARAAYQKA  144 (145)
T ss_pred             CCHHHHHHHHHh-ccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence            447788888855 7788888888889999999999999988765554

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=80.13  E-value=3.3  Score=41.49  Aligned_cols=47  Identities=26%  Similarity=0.288  Sum_probs=25.4

Q ss_pred             HHHHHHHHHHHHhhCCCcCchHHHHHHHHhccCCcHHHHHHHHHHHH
Q 015869          336 LEKAEELLLRCIEKNPFVGEPHVVLGQIYLAKGEFEEAEREAGKGLM  382 (399)
Q Consensus       336 ~d~a~~lL~~~i~~NP~VgEP~~vLAQ~~l~~gr~~eA~~~A~~gL~  382 (399)
                      .+++.+.+++..+++|=--+.++.+|++|+..|+|++|+++-+++++
T Consensus       310 ~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~  356 (398)
T PRK10747        310 PEQLEKVLRQQIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALK  356 (398)
T ss_pred             hHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence            34455555555555555555555555555555555555555555443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	399
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-06
4g1t_A	472	Interferon-induced protein with tetratricopeptide	3e-04
2gw1_A	514	Mitochondrial precursor proteins import receptor;	4e-04
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	7e-04
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	8e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 48.7 bits (115), Expect = 3e-06
 Identities = 67/398 (16%), Positives = 128/398 (32%), Gaps = 138/398 (34%)

Query: 11  DYLETLVASA---RPF-LRGELEAIDKNLPSLIAVLRSVGAGECWHKHGSFLEHLVDIYR 66
           D +++L+      RP  L  E+   +    S+IA     G    W       +H V+  +
Sbjct: 301 DEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLAT-W----DNWKH-VNCDK 354

Query: 67  ILKIWKAPDCVCLCGLFHSAYSNSYVNLAIFDPNTG----------RDVVRGHVGDAAEK 116
           +  I ++     L  L  + Y   +  L++F P+             DV++  V     K
Sbjct: 355 LTTIIES----SLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNK 410

Query: 117 LIHLFCIVPRQPL-----IHDDLLFEYSDQELVEHLKASDVSLINAKEKGLFNAEEAWRK 171
           L H + +V +QP      I   +  E   +  +E+  A   S+++      +N  + +  
Sbjct: 411 L-HKYSLVEKQPKESTISIP-SIYLELKVK--LENEYALHRSIVDH-----YNIPKTFDS 461

Query: 172 KINELLPADGLTVKHI-------KTGEDVGVSRRVVATFVMLTIADFSDQLFGFQDFLFN 224
                   D     HI       +  E + + R V                  F DF F 
Sbjct: 462 DDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMV------------------FLDFRF- 502

Query: 225 NSDGKLEFAGNSFSALWPGDGKPGLWMNSLSRMGAIYSLIAREEEIFIQERKTSAAAVGV 284
             + K+     +++A        G  +N+L ++   Y       + +I +          
Sbjct: 503 -LEQKIRHDSTAWNA-------SGSILNTLQQL-KFY-------KPYICDND-------- 538

Query: 285 GVDKERDEDIELPVPPVFENCTRILDAKEQIEARDLYWEAVCGNSDGSKEKLEKAEELLL 344
                          P +E   R+++         +             + L K EE L+
Sbjct: 539 ---------------PKYE---RLVN--------AI------------LDFLPKIEENLI 560

Query: 345 RCIEKNPFVGEPHVVLGQIYL---AKGEFEEAEREAGK 379
                       +  L +I L    +  FEEA ++  +
Sbjct: 561 CS---------KYTDLLRIALMAEDEAIFEEAHKQVQR 589

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 47.5 bits (112), Expect = 6e-06
 Identities = 55/378 (14%), Positives = 109/378 (28%), Gaps = 99/378 (26%)

Query: 48  GECWHKHGSFLEHLVDIYRILKIWKAPDCVCLCGLFHSAYSNSYVNLAIFDPNT------ 101
           GE  +++   L    D           DC  +  +  S  S   ++  I   +       
Sbjct: 12  GEHQYQYKDILSVFED-----AFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLR 66

Query: 102 --------GRDVVRGHVGDAAEK----LIHLFCIVPRQPLIHDDLLFEYSD--QELVEHL 147
                     ++V+  V +        L+       RQP +   +  E  D      +  
Sbjct: 67  LFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVF 126

Query: 148 KASDVSLINAKEKGLFNAEEAWRKKINELLPADGLTVKHIKTGEDVGVSRRVVATFVMLT 207
              +VS +    K L       R+ + EL PA  + +     G  +G  +  VA  V   
Sbjct: 127 AKYNVSRLQPYLK-L-------RQALLELRPAKNVLI-D---G-VLGSGKTWVALDVC-- 171

Query: 208 IADFSDQLFGFQDFLFNNSDGKLEFAGNSFSALWPGDGKPGLWMNSLSRMGAIYSLIARE 267
                        +       + +     F            W+N L    +  +++   
Sbjct: 172 -----------LSYKV-----QCKMDFKIF------------WLN-LKNCNSPETVLEML 202

Query: 268 EEIFIQ------ERKTSAAAVGVGVDKERDEDIELPVPPVFENCTRILD---AKEQIEA- 317
           +++  Q       R   ++ + + +   + E   L     +ENC  +L      +   A 
Sbjct: 203 QKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAF 262

Query: 318 ----------RDLYWEAVCGNSDGSKEKLE---------KAEELLLRCIEKNPFVGEPHV 358
                     R          +  +   L+         + + LLL+ ++  P    P  
Sbjct: 263 NLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQ-DLPRE 321

Query: 359 VLGQIYLAKGEFEEAERE 376
           VL           E+ R+
Sbjct: 322 VLTTNPRRLSIIAESIRD 339

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 41.8 bits (98), Expect = 3e-04
 Identities = 11/64 (17%), Positives = 22/64 (34%)

Query: 312 KEQIEARDLYWEAVCGNSDGSKEKLEKAEELLLRCIEKNPFVGEPHVVLGQIYLAKGEFE 371
           + ++       E          E +  A   L +  E N  +     +L  ++    ++E
Sbjct: 292 RAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYE 351

Query: 372 EAER 375
           EAE 
Sbjct: 352 EAEY 355

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 41.3 bits (97), Expect = 4e-04
 Identities = 12/54 (22%), Positives = 25/54 (46%)

Query: 320 LYWEAVCGNSDGSKEKLEKAEELLLRCIEKNPFVGEPHVVLGQIYLAKGEFEEA 373
           L  +A     + + E   +A  LL +  + +P   +  + L Q+ L + + +EA
Sbjct: 415 LVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEA 468

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score = 39.7 bits (93), Expect = 7e-04
 Identities = 6/41 (14%), Positives = 17/41 (41%)

Query: 333 KEKLEKAEELLLRCIEKNPFVGEPHVVLGQIYLAKGEFEEA 373
               +KA       ++K P   +      ++ + +G+ ++A
Sbjct: 67  NRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDA 107

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Length = 100

 Score = 37.6 bits (88), Expect = 8e-04
 Identities = 9/57 (15%), Positives = 21/57 (36%)

Query: 327 GNSDGSKEKLEKAEELLLRCIEKNPFVGEPHVVLGQIYLAKGEFEEAEREAGKGLML 383
                  +   +A  L    +E +P     +  LG++Y      ++A     +G+ +
Sbjct: 14  AQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEV 70

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	399
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	96.97
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	96.55
2l6j_A	111	TPR repeat-containing protein associated with HSP;	96.45
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	96.44
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	96.39
2kat_A	115	Uncharacterized protein; NESG, structure, structur	96.33
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	96.3
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	96.24
3k9i_A	117	BH0479 protein; putative protein binding protein,	96.24
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	96.15
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	96.14
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	96.14
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	96.13
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	96.12
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	96.09
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	96.07
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	96.05
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	96.04
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	96.0
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	95.98
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	95.95
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	95.95
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	95.82
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	95.81
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	95.74
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	95.73
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	95.72
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	95.72
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	95.68
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	95.67
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	95.64
2kat_A	115	Uncharacterized protein; NESG, structure, structur	95.62
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	95.61
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	95.6
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	95.56
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	95.53
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	95.52
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	95.52
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	95.48
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	95.46
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	95.41
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	95.33
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	95.27
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	95.26
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	95.16
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	95.14
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	95.1
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	95.09
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	95.07
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	95.05
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	94.96
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	94.9
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	94.84
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	94.8
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	94.76
3k9i_A	117	BH0479 protein; putative protein binding protein,	94.75
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	94.75
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	94.63
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	94.49
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	94.42
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	94.38
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	94.34
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	94.32
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	94.24
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	94.2
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	94.17
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	94.06
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	94.02
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	94.02
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	94.01
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	93.79
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	93.78
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	93.77
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	93.74
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	93.57
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	93.5
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	93.44
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	93.41
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	93.39
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	93.38
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	93.26
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	93.19
3u4t_A	272	TPR repeat-containing protein; structural genomics	93.13
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	93.04
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	93.02
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	92.98
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	92.88
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	92.73
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	92.66
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	92.65
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	92.65
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	92.63
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	92.62
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	92.6
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	92.59
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	92.56
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	92.54
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	92.43
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	92.32
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	92.28
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	92.14
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	92.11
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	92.09
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	92.04
3u4t_A	272	TPR repeat-containing protein; structural genomics	91.99
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	91.94
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	91.91
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	91.84
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	91.77
4g1t_A	472	Interferon-induced protein with tetratricopeptide	91.69
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	91.65
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	91.62
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	91.51
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	91.47
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	91.4
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	91.33
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	91.28
2gw1_A	514	Mitochondrial precursor proteins import receptor;	91.24
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	91.24
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	91.15
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	91.03
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	90.96
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	90.78
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	90.73
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	90.65
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	90.5
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	90.43
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	90.42
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	90.41
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	90.06
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	89.77
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	89.3
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	89.29
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	89.13
2gw1_A	514	Mitochondrial precursor proteins import receptor;	89.13
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	88.8
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	88.64
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	88.61
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	88.56
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	88.55
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	88.41
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	88.3
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	88.16
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	88.12
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	88.08
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	87.92
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	87.73
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	87.08
4g1t_A	472	Interferon-induced protein with tetratricopeptide	86.77
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	86.13
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	86.11
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	85.72
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	85.68
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	85.61
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	85.52
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	85.24
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	84.66
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	84.53
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	84.24
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	84.0
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	83.83
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	83.56
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	83.54
1vj7_A	393	Bifunctional RELA/SPOT; HD domain, alpha beta 2-la	81.91
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	81.78
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	81.55
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	80.38

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=96.97  E-value=0.0017  Score=49.23  Aligned_cols=57  Identities=19%  Similarity=0.245  Sum_probs=52.0

Q ss_pred             hhHHHHHHHHHHHHhhCCCcCchHHHHHHHHhccCCcHHHHHHHHHHHHHHHhhCCC
Q 015869          334 EKLEKAEELLLRCIEKNPFVGEPHVVLGQIYLAKGEFEEAEREAGKGLMLLLEWGSP  390 (399)
Q Consensus       334 ~~~d~a~~lL~~~i~~NP~VgEP~~vLAQ~~l~~gr~~eA~~~A~~gL~ll~~WG~~  390 (399)
                      ...+.|.+.++++++.||-..+.+..||++|...|++++|...-++++++--..|..
T Consensus        21 g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~~~   77 (100)
T 3ma5_A           21 DNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGTQ   77 (100)
T ss_dssp             TCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCH
T ss_pred             CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCCch
Confidence            348899999999999999999999999999999999999999999999987666554

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=96.55  E-value=0.005  Score=43.50  Aligned_cols=50  Identities=28%  Similarity=0.412  Sum_probs=46.6

Q ss_pred             hhHHHHHHHHHHHHhhCCCcCchHHHHHHHHhccCCcHHHHHHHHHHHHH
Q 015869          334 EKLEKAEELLLRCIEKNPFVGEPHVVLGQIYLAKGEFEEAEREAGKGLML  383 (399)
Q Consensus       334 ~~~d~a~~lL~~~i~~NP~VgEP~~vLAQ~~l~~gr~~eA~~~A~~gL~l  383 (399)
                      ...++|...++++++.+|-..+.+..||++|...|++++|....++++++
T Consensus        23 ~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~   72 (91)
T 1na3_A           23 GDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL   72 (91)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence            34889999999999999999999999999999999999999999998876

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=96.45  E-value=0.0039  Score=45.51  Aligned_cols=50  Identities=16%  Similarity=0.092  Sum_probs=46.4

Q ss_pred             hhHHHHHHHHHHHHhhCCCcCchHHHHHHHHhccCCcHHHHHHHHHHHHH
Q 015869          334 EKLEKAEELLLRCIEKNPFVGEPHVVLGQIYLAKGEFEEAEREAGKGLML  383 (399)
Q Consensus       334 ~~~d~a~~lL~~~i~~NP~VgEP~~vLAQ~~l~~gr~~eA~~~A~~gL~l  383 (399)
                      ...+.|.+.++++++.+|--.+.+.-+|++|...|+|++|....++++++
T Consensus        18 ~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~   67 (111)
T 2l6j_A           18 GLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRY   67 (111)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS
T ss_pred             CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence            44889999999999999999999999999999999999999999988865

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=96.44  E-value=0.004  Score=49.96  Aligned_cols=49  Identities=20%  Similarity=0.162  Sum_probs=29.2

Q ss_pred             HHHHHHHHHHHHhhCCCcCchHHHHHHHHhccCCcHHHHHHHHHHHHHH
Q 015869          336 LEKAEELLLRCIEKNPFVGEPHVVLGQIYLAKGEFEEAEREAGKGLMLL  384 (399)
Q Consensus       336 ~d~a~~lL~~~i~~NP~VgEP~~vLAQ~~l~~gr~~eA~~~A~~gL~ll  384 (399)
                      .+.|.+.++++++.||-..+.+..||++|...|+|++|...-++++++-
T Consensus        61 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~  109 (164)
T 3sz7_A           61 HEKAAEDAELATVVDPKYSKAWSRLGLARFDMADYKGAKEAYEKGIEAE  109 (164)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence            4555566666666666655566666666666666666666665555554

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=96.39  E-value=0.0058  Score=44.63  Aligned_cols=50  Identities=18%  Similarity=0.316  Sum_probs=46.5

Q ss_pred             hHHHHHHHHHHHHhhCCCcCc-hHHHHHHHHhccCCcHHHHHHHHHHHHHH
Q 015869          335 KLEKAEELLLRCIEKNPFVGE-PHVVLGQIYLAKGEFEEAEREAGKGLMLL  384 (399)
Q Consensus       335 ~~d~a~~lL~~~i~~NP~VgE-P~~vLAQ~~l~~gr~~eA~~~A~~gL~ll  384 (399)
                      ..+.|.+.++++++.+|--.+ .+..+|++|...|+|++|...-++++++-
T Consensus        15 ~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~   65 (99)
T 2kc7_A           15 DIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELN   65 (99)
T ss_dssp             CHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred             CHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence            378899999999999999988 99999999999999999999999998763

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=96.33  E-value=0.0084  Score=45.27  Aligned_cols=56  Identities=20%  Similarity=0.237  Sum_probs=50.9

Q ss_pred             hhHHHHHHHHHHHHhhCCCcCchHHHHHHHHhccCCcHHHHHHHHHHHHHHHhhCC
Q 015869          334 EKLEKAEELLLRCIEKNPFVGEPHVVLGQIYLAKGEFEEAEREAGKGLMLLLEWGS  389 (399)
Q Consensus       334 ~~~d~a~~lL~~~i~~NP~VgEP~~vLAQ~~l~~gr~~eA~~~A~~gL~ll~~WG~  389 (399)
                      ...+.|...++++++.+|-..+.+..||++|...|++++|...-++++++.-.-|.
T Consensus        33 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~   88 (115)
T 2kat_A           33 EQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAAAQSRGD   88 (115)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTC
T ss_pred             cCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccc
Confidence            34789999999999999999999999999999999999999999999988766554

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=96.30  E-value=0.0067  Score=47.75  Aligned_cols=85  Identities=15%  Similarity=-0.022  Sum_probs=54.4

Q ss_pred             ccccccccccCChhhHHHHHHHHHHhhccCCCCC------------chhHHHHHHHHHHHHhhCCCcCchHHHHHHHHhc
Q 015869          299 PPVFENCTRILDAKEQIEARDLYWEAVCGNSDGS------------KEKLEKAEELLLRCIEKNPFVGEPHVVLGQIYLA  366 (399)
Q Consensus       299 PPVF~~CT~vL~~~dq~aArdlYWeav~~~~~~~------------~~~~d~a~~lL~~~i~~NP~VgEP~~vLAQ~~l~  366 (399)
                      +..|......+..++-..|...|=+++..+.+..            ....+.|.+.++++++.||--.+.+..||.+|..
T Consensus        18 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~   97 (121)
T 1hxi_A           18 ENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTN   97 (121)
T ss_dssp             SCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            3344444455555666667777766665222221            1225667777778888888777777778888888


Q ss_pred             cCCcHHHHHHHHHHHHH
Q 015869          367 KGEFEEAEREAGKGLML  383 (399)
Q Consensus       367 ~gr~~eA~~~A~~gL~l  383 (399)
                      .|++++|...-++++++
T Consensus        98 ~g~~~~A~~~~~~al~~  114 (121)
T 1hxi_A           98 EHNANAALASLRAWLLS  114 (121)
T ss_dssp             HHHHHHHHHHHHHHHC-
T ss_pred             cCCHHHHHHHHHHHHHh
Confidence            88887777777776654

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=96.24  E-value=0.012  Score=43.50  Aligned_cols=63  Identities=17%  Similarity=0.042  Sum_probs=52.3

Q ss_pred             HHHHHhhccCCCCCchhHHHHHHHHHHHHhhCCCcCchHHHHHHHHhccCCcHHHHHHHHHHHHHH
Q 015869          319 DLYWEAVCGNSDGSKEKLEKAEELLLRCIEKNPFVGEPHVVLGQIYLAKGEFEEAEREAGKGLMLL  384 (399)
Q Consensus       319 dlYWeav~~~~~~~~~~~d~a~~lL~~~i~~NP~VgEP~~vLAQ~~l~~gr~~eA~~~A~~gL~ll  384 (399)
                      -+|.-+.+   -......+.|.+.++++++.+|--.+.+..+|++|...|++++|....++++++-
T Consensus        52 ~~~~la~~---~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~  114 (133)
T 2lni_A           52 LYSNRAAC---YTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLD  114 (133)
T ss_dssp             HHHHHHHH---HTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHH---HHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC
Confidence            34445544   2233458899999999999999999999999999999999999999999988763

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=96.24  E-value=0.0072  Score=46.25  Aligned_cols=50  Identities=18%  Similarity=0.169  Sum_probs=46.9

Q ss_pred             hhHHHHHHHHHHHHhhCCCcCchHHHHHHHHhccCCcHHHHHHHHHHHHH
Q 015869          334 EKLEKAEELLLRCIEKNPFVGEPHVVLGQIYLAKGEFEEAEREAGKGLML  383 (399)
Q Consensus       334 ~~~d~a~~lL~~~i~~NP~VgEP~~vLAQ~~l~~gr~~eA~~~A~~gL~l  383 (399)
                      ...+.|.+.++++++.+|-..+.+..||++|...|++++|....+++|++
T Consensus        41 ~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~   90 (117)
T 3k9i_A           41 GEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVELLLKIIAE   90 (117)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            34889999999999999999999999999999999999999999998876

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=96.15  E-value=0.0097  Score=45.33  Aligned_cols=50  Identities=16%  Similarity=0.058  Sum_probs=43.6

Q ss_pred             hHHHHHHHHHHHHhhCCCcCchHHHHHHHHhccCCcHHHHHHHHHHHHHH
Q 015869          335 KLEKAEELLLRCIEKNPFVGEPHVVLGQIYLAKGEFEEAEREAGKGLMLL  384 (399)
Q Consensus       335 ~~d~a~~lL~~~i~~NP~VgEP~~vLAQ~~l~~gr~~eA~~~A~~gL~ll  384 (399)
                      ..+.|.+.++++++.||-..+.+..+|.+|...|+|++|...-++++++-
T Consensus        53 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~  102 (126)
T 3upv_A           53 SFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKD  102 (126)
T ss_dssp             CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHHhC
Confidence            36788888999999999888889999999999999999998888888876

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=96.14  E-value=0.0099  Score=45.28  Aligned_cols=50  Identities=14%  Similarity=0.048  Sum_probs=47.1

Q ss_pred             hhHHHHHHHHHHHHhhCCCcCchHHHHHHHHhccCCcHHHHHHHHHHHHH
Q 015869          334 EKLEKAEELLLRCIEKNPFVGEPHVVLGQIYLAKGEFEEAEREAGKGLML  383 (399)
Q Consensus       334 ~~~d~a~~lL~~~i~~NP~VgEP~~vLAQ~~l~~gr~~eA~~~A~~gL~l  383 (399)
                      ...+.|.+.+.++|+.+|--.+.+.-+|.+|...|+|++|....++++++
T Consensus        18 ~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~   67 (126)
T 3upv_A           18 SDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEK   67 (126)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence            34889999999999999999999999999999999999999999999886

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=96.14  E-value=0.013  Score=42.76  Aligned_cols=48  Identities=21%  Similarity=0.061  Sum_probs=30.4

Q ss_pred             HHHHHHHHHHHHhhCCCcCchHHHHHHHHhccCCcHHHHHHHHHHHHH
Q 015869          336 LEKAEELLLRCIEKNPFVGEPHVVLGQIYLAKGEFEEAEREAGKGLML  383 (399)
Q Consensus       336 ~d~a~~lL~~~i~~NP~VgEP~~vLAQ~~l~~gr~~eA~~~A~~gL~l  383 (399)
                      .+.|.+.+.++++.+|--.+.+..+|++|...|++++|....++++++
T Consensus        62 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~  109 (131)
T 2vyi_A           62 YAGAVQDCERAICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALEL  109 (131)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHhcCccCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence            455666666666666666666666666666666666666666665554

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=96.13  E-value=0.0074  Score=48.49  Aligned_cols=50  Identities=26%  Similarity=0.176  Sum_probs=46.8

Q ss_pred             hhHHHHHHHHHHHHhhCCCcCchHHHHHHHHhccCCcHHHHHHHHHHHHH
Q 015869          334 EKLEKAEELLLRCIEKNPFVGEPHVVLGQIYLAKGEFEEAEREAGKGLML  383 (399)
Q Consensus       334 ~~~d~a~~lL~~~i~~NP~VgEP~~vLAQ~~l~~gr~~eA~~~A~~gL~l  383 (399)
                      ...++|.+.++++++.||-..+.+.-||.+|...|++++|...-+++|++
T Consensus       121 g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~  170 (184)
T 3vtx_A          121 GEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEAVKYFKKALEK  170 (184)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred             CCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHHHHHHHHHHhC
Confidence            34889999999999999999999999999999999999999999999875

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=96.12  E-value=0.0093  Score=42.68  Aligned_cols=46  Identities=15%  Similarity=-0.020  Sum_probs=28.5

Q ss_pred             HHHHHHHHHHHHhhCCC--cCchHHHHHHHHhcc-CCcHHHHHHHHHHH
Q 015869          336 LEKAEELLLRCIEKNPF--VGEPHVVLGQIYLAK-GEFEEAEREAGKGL  381 (399)
Q Consensus       336 ~d~a~~lL~~~i~~NP~--VgEP~~vLAQ~~l~~-gr~~eA~~~A~~gL  381 (399)
                      .+.|.+.++++++.+|-  ..+.+..||++|... |++++|...-.+++
T Consensus        56 ~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~  104 (112)
T 2kck_A           56 YEEAVDCYNYVINVIEDEYNKDVWAAKADALRYIEGKEVEAEIAEARAK  104 (112)
T ss_dssp             HHHHHHHHHHHHHTSCCTTCHHHHHHHHHHHTTCSSCSHHHHHHHHHHG
T ss_pred             HHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence            45566666666666666  556666666666666 66666665555444

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=96.09  E-value=0.013  Score=46.34  Aligned_cols=57  Identities=19%  Similarity=0.126  Sum_probs=51.2

Q ss_pred             hhHHHHHHHHHHHHhhCCCcCchHHHHHHHHhccCCcHHHHHHHHHHHHHHHhhCCC
Q 015869          334 EKLEKAEELLLRCIEKNPFVGEPHVVLGQIYLAKGEFEEAEREAGKGLMLLLEWGSP  390 (399)
Q Consensus       334 ~~~d~a~~lL~~~i~~NP~VgEP~~vLAQ~~l~~gr~~eA~~~A~~gL~ll~~WG~~  390 (399)
                      ...+.|.+...+||+.||--.+.+.-+|++|+..|+|++|.....++|++--.....
T Consensus        22 ~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~   78 (127)
T 4gcn_A           22 KDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRAD   78 (127)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCC
T ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchh
Confidence            348899999999999999999999999999999999999999999999987665443

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=96.07  E-value=0.0099  Score=48.17  Aligned_cols=48  Identities=17%  Similarity=0.193  Sum_probs=32.8

Q ss_pred             HHHHHHHHHHHHhhCCCcCchHHHHHHHHhccCCcHHHHHHHHHHHHH
Q 015869          336 LEKAEELLLRCIEKNPFVGEPHVVLGQIYLAKGEFEEAEREAGKGLML  383 (399)
Q Consensus       336 ~d~a~~lL~~~i~~NP~VgEP~~vLAQ~~l~~gr~~eA~~~A~~gL~l  383 (399)
                      .++|++.++++|+.||--.+-+..||++|...|++++|...-++++++
T Consensus        47 ~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~   94 (150)
T 4ga2_A           47 YDLAKKYICTYINVQERDPKAHRFLGLLYELEENTDKAVECYRRSVEL   94 (150)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCchHHHHHHHHHHHHh
Confidence            566677777777777766666777777777777777776666666654

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=96.05  E-value=0.0098  Score=47.24  Aligned_cols=50  Identities=16%  Similarity=0.165  Sum_probs=45.6

Q ss_pred             hhHHHHHHHHHHHHhhCCCcCchHHHHHHHHhccCCcHHHHHHHHHHHHH
Q 015869          334 EKLEKAEELLLRCIEKNPFVGEPHVVLGQIYLAKGEFEEAEREAGKGLML  383 (399)
Q Consensus       334 ~~~d~a~~lL~~~i~~NP~VgEP~~vLAQ~~l~~gr~~eA~~~A~~gL~l  383 (399)
                      ...+.|.+.+.++|+.||--.+.+.-||++|...|+|++|...-+++|++
T Consensus        61 ~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l  110 (126)
T 4gco_A           61 MEFQRALDDCDTCIRLDSKFIKGYIRKAACLVAMREWSKAQRAYEDALQV  110 (126)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence            44788999999999999999999999999999999999999999988876

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=96.04  E-value=0.012  Score=44.57  Aligned_cols=64  Identities=22%  Similarity=0.102  Sum_probs=51.7

Q ss_pred             HHHHHHHhhccCCCCCchhHHHHHHHHHHHHhhCCCcCchHHHHHHHHhccCCcHHHHHHHHHHHHH
Q 015869          317 ARDLYWEAVCGNSDGSKEKLEKAEELLLRCIEKNPFVGEPHVVLGQIYLAKGEFEEAEREAGKGLML  383 (399)
Q Consensus       317 ArdlYWeav~~~~~~~~~~~d~a~~lL~~~i~~NP~VgEP~~vLAQ~~l~~gr~~eA~~~A~~gL~l  383 (399)
                      +.-++.-+.+   -......+.|.+.++++++.+|-..+.+.-+|++|...|++++|...-++++++
T Consensus        65 ~~~~~~~a~~---~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~  128 (148)
T 2dba_A           65 AVLHRNRAAC---HLKLEDYDKAETEASKAIEKDGGDVKALYRRSQALEKLGRLDQAVLDLQRCVSL  128 (148)
T ss_dssp             HHHHHHHHHH---HHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHH---HHHHccHHHHHHHHHHHHhhCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence            4444445544   122334889999999999999999999999999999999999999999988876

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=96.00  E-value=0.0042  Score=48.94  Aligned_cols=49  Identities=20%  Similarity=0.077  Sum_probs=46.6

Q ss_pred             hHHHHHHHHHHHHhhCCCcCchHHHHHHHHhccCCcHHHHHHHHHHHHH
Q 015869          335 KLEKAEELLLRCIEKNPFVGEPHVVLGQIYLAKGEFEEAEREAGKGLML  383 (399)
Q Consensus       335 ~~d~a~~lL~~~i~~NP~VgEP~~vLAQ~~l~~gr~~eA~~~A~~gL~l  383 (399)
                      ..+.|...++++++.||--.+.+..||.+|...|++++|...-++++++
T Consensus        32 ~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l   80 (121)
T 1hxi_A           32 NLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARML   80 (121)
T ss_dssp             CHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            4789999999999999999999999999999999999999999999886

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=95.98  E-value=0.012  Score=46.47  Aligned_cols=76  Identities=13%  Similarity=-0.037  Sum_probs=53.0

Q ss_pred             CChhhHHHHHHHHHHhhccCCCC------------CchhHHHHHHHHHHHHhhCCCcCchHHHHHHHHhccCCcHHHHHH
Q 015869          309 LDAKEQIEARDLYWEAVCGNSDG------------SKEKLEKAEELLLRCIEKNPFVGEPHVVLGQIYLAKGEFEEAERE  376 (399)
Q Consensus       309 L~~~dq~aArdlYWeav~~~~~~------------~~~~~d~a~~lL~~~i~~NP~VgEP~~vLAQ~~l~~gr~~eA~~~  376 (399)
                      +..++-..|...|=+++..+.+.            .....+.|.+.++++++.||---+.+.-||++|...|++++|...
T Consensus        29 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~  108 (142)
T 2xcb_A           29 YQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHLQLGDLDGAESG  108 (142)
T ss_dssp             HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHH
Confidence            34455556666666666422221            112367788888888888888888888888888888888888888


Q ss_pred             HHHHHHHH
Q 015869          377 AGKGLMLL  384 (399)
Q Consensus       377 A~~gL~ll  384 (399)
                      -++++++-
T Consensus       109 ~~~al~~~  116 (142)
T 2xcb_A          109 FYSARALA  116 (142)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHhC
Confidence            88887764

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=95.95  E-value=0.013  Score=44.52  Aligned_cols=75  Identities=24%  Similarity=0.196  Sum_probs=53.9

Q ss_pred             hhHHHHHHHHHHhhccCCCC------------CchhHHHHHHHHHHHHhhCCCcCchHHHHHHHHhccCCcHHHHHHHHH
Q 015869          312 KEQIEARDLYWEAVCGNSDG------------SKEKLEKAEELLLRCIEKNPFVGEPHVVLGQIYLAKGEFEEAEREAGK  379 (399)
Q Consensus       312 ~dq~aArdlYWeav~~~~~~------------~~~~~d~a~~lL~~~i~~NP~VgEP~~vLAQ~~l~~gr~~eA~~~A~~  379 (399)
                      ++-..|...|-+++.-+.+.            .....+.|...++++++.+|-..+++..||.+|...|++++|...-.+
T Consensus        23 ~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~  102 (137)
T 3q49_B           23 RKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQR  102 (137)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence            44455666666666422221            122367788888888888888888888888888888888888888888


Q ss_pred             HHHHHHh
Q 015869          380 GLMLLLE  386 (399)
Q Consensus       380 gL~ll~~  386 (399)
                      ++++--.
T Consensus       103 a~~~~p~  109 (137)
T 3q49_B          103 AYSLAKE  109 (137)
T ss_dssp             HHHHHHH
T ss_pred             HHHHChh
Confidence            8887654

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=95.95  E-value=0.015  Score=45.91  Aligned_cols=50  Identities=16%  Similarity=0.223  Sum_probs=47.0

Q ss_pred             hhHHHHHHHHHHHHhhCCCcCchHHHHHHHHhccCCcHHHHHHHHHHHHH
Q 015869          334 EKLEKAEELLLRCIEKNPFVGEPHVVLGQIYLAKGEFEEAEREAGKGLML  383 (399)
Q Consensus       334 ~~~d~a~~lL~~~i~~NP~VgEP~~vLAQ~~l~~gr~~eA~~~A~~gL~l  383 (399)
                      ...+.|.+.++++++.||--.+.+..||.+|...|+|++|....++++++
T Consensus        32 g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~   81 (142)
T 2xcb_A           32 GKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALM   81 (142)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence            44889999999999999999999999999999999999999999999876

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=95.82  E-value=0.017  Score=43.80  Aligned_cols=50  Identities=26%  Similarity=0.260  Sum_probs=47.0

Q ss_pred             hhHHHHHHHHHHHHhhCCCcCchHHHHHHHHhccCCcHHHHHHHHHHHHH
Q 015869          334 EKLEKAEELLLRCIEKNPFVGEPHVVLGQIYLAKGEFEEAEREAGKGLML  383 (399)
Q Consensus       334 ~~~d~a~~lL~~~i~~NP~VgEP~~vLAQ~~l~~gr~~eA~~~A~~gL~l  383 (399)
                      ...+.|.+.+.++++.+|-..+.+..+|.+|...|+|++|....++++++
T Consensus        23 ~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~   72 (137)
T 3q49_B           23 RKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALEL   72 (137)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence            44889999999999999999999999999999999999999999999875

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=95.81  E-value=0.016  Score=46.07  Aligned_cols=50  Identities=12%  Similarity=0.036  Sum_probs=47.2

Q ss_pred             hhHHHHHHHHHHHHhhCCCcCchHHHHHHHHhccCCcHHHHHHHHHHHHH
Q 015869          334 EKLEKAEELLLRCIEKNPFVGEPHVVLGQIYLAKGEFEEAEREAGKGLML  383 (399)
Q Consensus       334 ~~~d~a~~lL~~~i~~NP~VgEP~~vLAQ~~l~~gr~~eA~~~A~~gL~l  383 (399)
                      ...+.|.+.+.++|++||--.+.+.-+|.+|...|+|++|....+++|++
T Consensus        27 g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~   76 (126)
T 4gco_A           27 GDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRL   76 (126)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHh
Confidence            34889999999999999999999999999999999999999999999986

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=95.74  E-value=0.019  Score=41.29  Aligned_cols=48  Identities=25%  Similarity=0.178  Sum_probs=34.6

Q ss_pred             HHHHHHHHHHHHhhCCCcCchHHHHHHHHhccCCcHHHHHHHHHHHHH
Q 015869          336 LEKAEELLLRCIEKNPFVGEPHVVLGQIYLAKGEFEEAEREAGKGLML  383 (399)
Q Consensus       336 ~d~a~~lL~~~i~~NP~VgEP~~vLAQ~~l~~gr~~eA~~~A~~gL~l  383 (399)
                      .+.|...++++++.+|-..+.+..+|.+|...|++++|....++++++
T Consensus        54 ~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~  101 (118)
T 1elw_A           54 YQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKH  101 (118)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHc
Confidence            566777777777777777777777777777777777777776666543

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=95.73  E-value=0.02  Score=46.58  Aligned_cols=51  Identities=16%  Similarity=-0.009  Sum_probs=47.1

Q ss_pred             hhHHHHHHHHHHHHhhCCCcCchHHHHHHHHhccCCcHHHHHHHHHHHHHH
Q 015869          334 EKLEKAEELLLRCIEKNPFVGEPHVVLGQIYLAKGEFEEAEREAGKGLMLL  384 (399)
Q Consensus       334 ~~~d~a~~lL~~~i~~NP~VgEP~~vLAQ~~l~~gr~~eA~~~A~~gL~ll  384 (399)
                      ...+.|.+.++++++.||--.+.+.-||++|...|++++|...-++++++-
T Consensus        69 g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~  119 (148)
T 2vgx_A           69 GQYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQXGELAEAESGLFLAQELI  119 (148)
T ss_dssp             TCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence            347899999999999999999999999999999999999999999998874

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=95.72  E-value=0.013  Score=42.06  Aligned_cols=50  Identities=18%  Similarity=0.230  Sum_probs=46.2

Q ss_pred             hhHHHHHHHHHHHHhhCCCcCchHHHHHHHHhccCCcHHHHHHHHHHHHH
Q 015869          334 EKLEKAEELLLRCIEKNPFVGEPHVVLGQIYLAKGEFEEAEREAGKGLML  383 (399)
Q Consensus       334 ~~~d~a~~lL~~~i~~NP~VgEP~~vLAQ~~l~~gr~~eA~~~A~~gL~l  383 (399)
                      ...+.|...+++++..+|--.+.+..+|++|...|+|++|....++++++
T Consensus        18 ~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~   67 (118)
T 1elw_A           18 GNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDL   67 (118)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence            34889999999999999998889999999999999999999999998876

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=95.72  E-value=0.014  Score=43.74  Aligned_cols=66  Identities=17%  Similarity=0.198  Sum_probs=52.1

Q ss_pred             HHHHHHHHHhhccCCCCCchhHHHHHHHHHHHHhhCCCc---CchHHHHHHHHhccCCcHHHHHHHHHHHHH
Q 015869          315 IEARDLYWEAVCGNSDGSKEKLEKAEELLLRCIEKNPFV---GEPHVVLGQIYLAKGEFEEAEREAGKGLML  383 (399)
Q Consensus       315 ~aArdlYWeav~~~~~~~~~~~d~a~~lL~~~i~~NP~V---gEP~~vLAQ~~l~~gr~~eA~~~A~~gL~l  383 (399)
                      .++..+|+-+.+   -......+.|...+++++..+|--   .+.+..||++|...|++++|...-++.++.
T Consensus        37 ~~~~~~~~lg~~---~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~  105 (129)
T 2xev_A           37 YTPNALYWLGES---YYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQYGEGKNTEAQQTLQQVATQ  105 (129)
T ss_dssp             THHHHHHHHHHH---HHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHH---HHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            334556666655   223344889999999999998876   788999999999999999999988887765

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=95.68  E-value=0.02  Score=47.94  Aligned_cols=50  Identities=16%  Similarity=0.012  Sum_probs=44.6

Q ss_pred             hhHHHHHHHHHHHHhhCCCcCchHHHHHHHHhccCCcHHHHHHHHHHHHH
Q 015869          334 EKLEKAEELLLRCIEKNPFVGEPHVVLGQIYLAKGEFEEAEREAGKGLML  383 (399)
Q Consensus       334 ~~~d~a~~lL~~~i~~NP~VgEP~~vLAQ~~l~~gr~~eA~~~A~~gL~l  383 (399)
                      ...+.|.+.++++++.||--.+++.-||.+|...|++++|...-++++++
T Consensus        84 g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l  133 (151)
T 3gyz_A           84 EQFQQAADLYAVAFALGKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQH  133 (151)
T ss_dssp             TCHHHHHHHHHHHHHHSSSCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            34788999999999999999999999999999999999999998888876

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=95.67  E-value=0.019  Score=46.02  Aligned_cols=67  Identities=19%  Similarity=0.169  Sum_probs=55.1

Q ss_pred             HHHHHHHHHHhhccCCCCCchhHHHHHHHHHHHHhhCCCcCchHHHHHHHHhccCCcHHHHHHHHHHHHH
Q 015869          314 QIEARDLYWEAVCGNSDGSKEKLEKAEELLLRCIEKNPFVGEPHVVLGQIYLAKGEFEEAEREAGKGLML  383 (399)
Q Consensus       314 q~aArdlYWeav~~~~~~~~~~~d~a~~lL~~~i~~NP~VgEP~~vLAQ~~l~~gr~~eA~~~A~~gL~l  383 (399)
                      ...|..+|-.+.+   -......+.|.+.+++++++||-..+.+.-||++|...|+|++|....++++++
T Consensus         8 ~~~a~~~~~~g~~---~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~   74 (164)
T 3sz7_A            8 TPESDKLKSEGNA---AMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVV   74 (164)
T ss_dssp             CHHHHHHHHHHHH---HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             hhhHHHHHHHHHH---HHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence            3445555555554   223344899999999999999999999999999999999999999999999876

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=95.64  E-value=0.018  Score=42.60  Aligned_cols=50  Identities=18%  Similarity=0.155  Sum_probs=46.3

Q ss_pred             hhHHHHHHHHHHHHhhCCCcCchHHHHHHHHhccCCcHHHHHHHHHHHHH
Q 015869          334 EKLEKAEELLLRCIEKNPFVGEPHVVLGQIYLAKGEFEEAEREAGKGLML  383 (399)
Q Consensus       334 ~~~d~a~~lL~~~i~~NP~VgEP~~vLAQ~~l~~gr~~eA~~~A~~gL~l  383 (399)
                      ...+.|.+.++++++.+|--.+.+..+|++|...|++++|....++++++
T Consensus        30 ~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~   79 (133)
T 2lni_A           30 GDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQL   79 (133)
T ss_dssp             TCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence            34788999999999999999999999999999999999999999998875

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=95.62  E-value=0.01  Score=44.84  Aligned_cols=47  Identities=17%  Similarity=0.111  Sum_probs=43.4

Q ss_pred             HHHHHHHHHHhhCCCcCchHHHHHHHHhccCCcHHHHHHHHHHHHHH
Q 015869          338 KAEELLLRCIEKNPFVGEPHVVLGQIYLAKGEFEEAEREAGKGLMLL  384 (399)
Q Consensus       338 ~a~~lL~~~i~~NP~VgEP~~vLAQ~~l~~gr~~eA~~~A~~gL~ll  384 (399)
                      .|.+.++++++.||--...+..||++|...|+|++|....++++++-
T Consensus         3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~   49 (115)
T 2kat_A            3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD   49 (115)
T ss_dssp             CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence            47889999999999999999999999999999999999999998863

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=95.61  E-value=0.019  Score=48.14  Aligned_cols=63  Identities=22%  Similarity=0.166  Sum_probs=53.0

Q ss_pred             HHHHHHhhccCCCCCchhHHHHHHHHHHHHhhCCCcCchHHHHHHHHhccCCcHHHHHHHHHHHHH
Q 015869          318 RDLYWEAVCGNSDGSKEKLEKAEELLLRCIEKNPFVGEPHVVLGQIYLAKGEFEEAEREAGKGLML  383 (399)
Q Consensus       318 rdlYWeav~~~~~~~~~~~d~a~~lL~~~i~~NP~VgEP~~vLAQ~~l~~gr~~eA~~~A~~gL~l  383 (399)
                      ..+|-.+++   -......+.|++.++++++.||--.+-+.-|+.+|...|+|++|...-++++++
T Consensus        37 ~~~~~lg~~---~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l   99 (151)
T 3gyz_A           37 DDIYSYAYD---FYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFAL   99 (151)
T ss_dssp             HHHHHHHHH---HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHH---HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhh
Confidence            345555554   123344899999999999999999999999999999999999999999999886

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=95.60  E-value=0.02  Score=46.52  Aligned_cols=50  Identities=16%  Similarity=0.177  Sum_probs=46.9

Q ss_pred             hhHHHHHHHHHHHHhhCCCcCchHHHHHHHHhccCCcHHHHHHHHHHHHH
Q 015869          334 EKLEKAEELLLRCIEKNPFVGEPHVVLGQIYLAKGEFEEAEREAGKGLML  383 (399)
Q Consensus       334 ~~~d~a~~lL~~~i~~NP~VgEP~~vLAQ~~l~~gr~~eA~~~A~~gL~l  383 (399)
                      ...+.|.+.++++++.||.-.+.+.-||.+|...|+|++|....++++++
T Consensus        35 g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l   84 (148)
T 2vgx_A           35 GXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVM   84 (148)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             CChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence            34889999999999999999999999999999999999999999999876

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=95.56  E-value=0.019  Score=43.07  Aligned_cols=50  Identities=26%  Similarity=0.268  Sum_probs=44.5

Q ss_pred             hhHHHHHHHHHHHHhhCCCcC---chHHHHHHHHhccCCcHHHHHHHHHHHHH
Q 015869          334 EKLEKAEELLLRCIEKNPFVG---EPHVVLGQIYLAKGEFEEAEREAGKGLML  383 (399)
Q Consensus       334 ~~~d~a~~lL~~~i~~NP~Vg---EP~~vLAQ~~l~~gr~~eA~~~A~~gL~l  383 (399)
                      ...+.|.+.++++++.+|--.   +.+..+|++|...|+|++|...-++++++
T Consensus        16 ~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~   68 (129)
T 2xev_A           16 GKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSR   68 (129)
T ss_dssp             TCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence            347899999999999988666   78999999999999999999999888775

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=95.53  E-value=0.0085  Score=48.56  Aligned_cols=52  Identities=12%  Similarity=0.098  Sum_probs=48.3

Q ss_pred             CchhHHHHHHHHHHHHhhCCCcCchHHHHHHHHhccCCcHHHHHHHHHHHHH
Q 015869          332 SKEKLEKAEELLLRCIEKNPFVGEPHVVLGQIYLAKGEFEEAEREAGKGLML  383 (399)
Q Consensus       332 ~~~~~d~a~~lL~~~i~~NP~VgEP~~vLAQ~~l~~gr~~eA~~~A~~gL~l  383 (399)
                      .+.+.|+|.+.+++++..+|---..++-||++|...|+|++|...-+++|++
T Consensus         9 ~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~   60 (150)
T 4ga2_A            9 SKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINV   60 (150)
T ss_dssp             CHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            4566899999999999999999999999999999999999999999999876

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=95.52  E-value=0.03  Score=40.58  Aligned_cols=50  Identities=28%  Similarity=0.419  Sum_probs=45.0

Q ss_pred             hhHHHHHHHHHHHHhhCCCcCchHHHHHHHHhccCCcHHHHHHHHHHHHH
Q 015869          334 EKLEKAEELLLRCIEKNPFVGEPHVVLGQIYLAKGEFEEAEREAGKGLML  383 (399)
Q Consensus       334 ~~~d~a~~lL~~~i~~NP~VgEP~~vLAQ~~l~~gr~~eA~~~A~~gL~l  383 (399)
                      ...++|...++++++.+|-..+.+..+|++|...|++++|...-++++++
T Consensus        83 ~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~  132 (136)
T 2fo7_A           83 GDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL  132 (136)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence            34788999999999999998899999999999999999999988888764

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=95.52  E-value=0.021  Score=48.60  Aligned_cols=47  Identities=28%  Similarity=0.332  Sum_probs=27.5

Q ss_pred             HHHHHHHHHHHHhhCCCcCchHHHHHHHHhccCCcHHHHHHHHHHHHH
Q 015869          336 LEKAEELLLRCIEKNPFVGEPHVVLGQIYLAKGEFEEAEREAGKGLML  383 (399)
Q Consensus       336 ~d~a~~lL~~~i~~NP~VgEP~~vLAQ~~l~~gr~~eA~~~A~~gL~l  383 (399)
                      .+.|.+.++++++.| --.+.+..||++|...|++++|...-+++|++
T Consensus       134 ~~~A~~~~~~al~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  180 (217)
T 2pl2_A          134 RDKAEASLKQALALE-DTPEIRSALAELYLSMGRLDEALAQYAKALEQ  180 (217)
T ss_dssp             HHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHhcc-cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            455666666666666 44444555666666666666666666655553

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=95.48  E-value=0.03  Score=40.82  Aligned_cols=67  Identities=21%  Similarity=0.201  Sum_probs=51.8

Q ss_pred             HHHHHHHHHHhhccCCCCCchhHHHHHHHHHHHHhhCCCcCchHHHHHHHHhccCCcHHHHHHHHHHHHH
Q 015869          314 QIEARDLYWEAVCGNSDGSKEKLEKAEELLLRCIEKNPFVGEPHVVLGQIYLAKGEFEEAEREAGKGLML  383 (399)
Q Consensus       314 q~aArdlYWeav~~~~~~~~~~~d~a~~lL~~~i~~NP~VgEP~~vLAQ~~l~~gr~~eA~~~A~~gL~l  383 (399)
                      ...+..++-.+.+   -......+.|.+.++++++.+|--.+.+..+|.+|...|++++|....++++++
T Consensus         9 ~~~~~~~~~~~~~---~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~   75 (131)
T 2vyi_A            9 SAEAERLKTEGNE---QMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICI   75 (131)
T ss_dssp             HHHHHHHHHHHHH---HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             hhhhHHHHHHHHH---HHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhc
Confidence            3344444444443   112334788999999999999988888999999999999999999999988875

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=95.46  E-value=0.031  Score=40.36  Aligned_cols=49  Identities=29%  Similarity=0.426  Sum_probs=45.1

Q ss_pred             hHHHHHHHHHHHHhhCCCcCchHHHHHHHHhccCCcHHHHHHHHHHHHH
Q 015869          335 KLEKAEELLLRCIEKNPFVGEPHVVLGQIYLAKGEFEEAEREAGKGLML  383 (399)
Q Consensus       335 ~~d~a~~lL~~~i~~NP~VgEP~~vLAQ~~l~~gr~~eA~~~A~~gL~l  383 (399)
                      ..+.|...++++++.+|-..+.+..||++|...|++++|....++++++
T Consensus        58 ~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~  106 (125)
T 1na0_A           58 DYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL  106 (125)
T ss_dssp             CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence            4788999999999999998889999999999999999999998888775

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=95.41  E-value=0.028  Score=41.13  Aligned_cols=53  Identities=15%  Similarity=0.167  Sum_probs=48.2

Q ss_pred             hHHHHHHHHHHHHhhCCCcCchHHHHHHHHhccCCcHHHHHHHHHHHHHHHhh
Q 015869          335 KLEKAEELLLRCIEKNPFVGEPHVVLGQIYLAKGEFEEAEREAGKGLMLLLEW  387 (399)
Q Consensus       335 ~~d~a~~lL~~~i~~NP~VgEP~~vLAQ~~l~~gr~~eA~~~A~~gL~ll~~W  387 (399)
                      ..+.|...+.++++.+|-..+-+.-+|.+|...|+|++|....++++++.-.-
T Consensus        19 ~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~   71 (131)
T 1elr_A           19 DFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGREN   71 (131)
T ss_dssp             CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHS
T ss_pred             CHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcccc
Confidence            47899999999999999988889999999999999999999999999876543

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=95.33  E-value=0.022  Score=48.19  Aligned_cols=50  Identities=20%  Similarity=0.168  Sum_probs=46.8

Q ss_pred             hhHHHHHHHHHHHHhhCCCcCchHHHHHHHHhccCCcHHHHHHHHHHHHH
Q 015869          334 EKLEKAEELLLRCIEKNPFVGEPHVVLGQIYLAKGEFEEAEREAGKGLML  383 (399)
Q Consensus       334 ~~~d~a~~lL~~~i~~NP~VgEP~~vLAQ~~l~~gr~~eA~~~A~~gL~l  383 (399)
                      ...++|...+++++++||--.+.+..||++|...|++++|...-+++|++
T Consensus        68 g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~  117 (208)
T 3urz_A           68 RNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQL  117 (208)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence            44889999999999999999999999999999999999999999998875

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=95.27  E-value=0.039  Score=39.85  Aligned_cols=50  Identities=28%  Similarity=0.412  Sum_probs=45.3

Q ss_pred             hhHHHHHHHHHHHHhhCCCcCchHHHHHHHHhccCCcHHHHHHHHHHHHH
Q 015869          334 EKLEKAEELLLRCIEKNPFVGEPHVVLGQIYLAKGEFEEAEREAGKGLML  383 (399)
Q Consensus       334 ~~~d~a~~lL~~~i~~NP~VgEP~~vLAQ~~l~~gr~~eA~~~A~~gL~l  383 (399)
                      ...+.|.+++.++++.+|-..+-+..+|++|...|++++|....++++++
T Consensus        23 ~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~   72 (125)
T 1na0_A           23 GDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL   72 (125)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence            34788999999999999988888899999999999999999998888775

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=95.26  E-value=0.043  Score=42.27  Aligned_cols=48  Identities=19%  Similarity=0.025  Sum_probs=28.9

Q ss_pred             HHHHHHHHHHHHhhCCCcCchHHHHHHHHhccCCcHHHHHHHHHHHHH
Q 015869          336 LEKAEELLLRCIEKNPFVGEPHVVLGQIYLAKGEFEEAEREAGKGLML  383 (399)
Q Consensus       336 ~d~a~~lL~~~i~~NP~VgEP~~vLAQ~~l~~gr~~eA~~~A~~gL~l  383 (399)
                      .+.|.+.+.++++.+|-..+.+.-+|++|...|++++|...-++++++
T Consensus        63 ~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~  110 (166)
T 1a17_A           63 YGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKV  110 (166)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence            455666666666666655556666666666666666666665555554

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=95.16  E-value=0.035  Score=44.31  Aligned_cols=64  Identities=16%  Similarity=0.032  Sum_probs=52.8

Q ss_pred             HHHHHHHhhccCCCCCchhHHHHHHHHHHHHhhCCCcCchHHHHHHHHhccCCcHHHHHHHHHHHHH
Q 015869          317 ARDLYWEAVCGNSDGSKEKLEKAEELLLRCIEKNPFVGEPHVVLGQIYLAKGEFEEAEREAGKGLML  383 (399)
Q Consensus       317 ArdlYWeav~~~~~~~~~~~d~a~~lL~~~i~~NP~VgEP~~vLAQ~~l~~gr~~eA~~~A~~gL~l  383 (399)
                      +.-++--+.|   -......+.|...+.++|+.+|--...+.-+|++|...|+|++|...-+++|++
T Consensus        63 ~~~~~nla~~---~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l  126 (162)
T 3rkv_A           63 IPLYANMSQC---YLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN  126 (162)
T ss_dssp             HHHHHHHHHH---HHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHH---HHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence            3344444555   223344889999999999999999999999999999999999999999998876

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=95.14  E-value=0.039  Score=42.52  Aligned_cols=53  Identities=9%  Similarity=0.026  Sum_probs=36.6

Q ss_pred             HHHHHHHHHHHHhhCCCcCchHH--HHHHHHhccCCcHHHHHHHHHHHHHHHhhC
Q 015869          336 LEKAEELLLRCIEKNPFVGEPHV--VLGQIYLAKGEFEEAEREAGKGLMLLLEWG  388 (399)
Q Consensus       336 ~d~a~~lL~~~i~~NP~VgEP~~--vLAQ~~l~~gr~~eA~~~A~~gL~ll~~WG  388 (399)
                      .+.|.+.++++++.||--.+.+.  -+++.++..|+|++|...-+....++-..+
T Consensus        97 ~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~  151 (166)
T 1a17_A           97 FRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVVDSLD  151 (166)
T ss_dssp             HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHhcccc
Confidence            56777888888888887666663  344447777888888777777766664433

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=95.10  E-value=0.036  Score=44.44  Aligned_cols=50  Identities=20%  Similarity=0.243  Sum_probs=44.0

Q ss_pred             hhHHHHHHHHHHHHhhCCCcCchHHHHHHHHhccCCcHHHHHHHHHHHHH
Q 015869          334 EKLEKAEELLLRCIEKNPFVGEPHVVLGQIYLAKGEFEEAEREAGKGLML  383 (399)
Q Consensus       334 ~~~d~a~~lL~~~i~~NP~VgEP~~vLAQ~~l~~gr~~eA~~~A~~gL~l  383 (399)
                      ...+.|.+.++++++.||--.+.+.-||++|...|++++|......++..
T Consensus        19 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~   68 (184)
T 3vtx_A           19 GDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVL   68 (184)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence            34888999999999999999999999999999999999999888777653

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=95.09  E-value=0.033  Score=39.76  Aligned_cols=50  Identities=14%  Similarity=0.165  Sum_probs=46.2

Q ss_pred             hhHHHHHHHHHHHHhhCCCcCchHHHHHHHHhccCCcHHHHHHHHHHHHH
Q 015869          334 EKLEKAEELLLRCIEKNPFVGEPHVVLGQIYLAKGEFEEAEREAGKGLML  383 (399)
Q Consensus       334 ~~~d~a~~lL~~~i~~NP~VgEP~~vLAQ~~l~~gr~~eA~~~A~~gL~l  383 (399)
                      ...+.|...++++++.+|-..+.+..+|++|...|+|++|....++++++
T Consensus        20 ~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~   69 (112)
T 2kck_A           20 GNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINV   69 (112)
T ss_dssp             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred             hhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence            34788999999999999999999999999999999999999999988875

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=95.07  E-value=0.038  Score=41.74  Aligned_cols=64  Identities=16%  Similarity=0.015  Sum_probs=51.3

Q ss_pred             HHHHHHHhhccCCCCCchhHHHHHHHHHHHHhhCCCc---CchHHHHHHHHhccCCcHHHHHHHHHHHHH
Q 015869          317 ARDLYWEAVCGNSDGSKEKLEKAEELLLRCIEKNPFV---GEPHVVLGQIYLAKGEFEEAEREAGKGLML  383 (399)
Q Consensus       317 ArdlYWeav~~~~~~~~~~~d~a~~lL~~~i~~NP~V---gEP~~vLAQ~~l~~gr~~eA~~~A~~gL~l  383 (399)
                      +..+|=.+.+   -......+.|.+.++++++.+|--   ..-+.-+|++|...|+|++|....++++++
T Consensus        28 ~~~~~~~a~~---~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~   94 (148)
T 2dba_A           28 VEQLRKEGNE---LFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEK   94 (148)
T ss_dssp             HHHHHHHHHH---HHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHH---HHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhh
Confidence            4455555544   223345889999999999999975   777889999999999999999999998876

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=95.05  E-value=0.029  Score=46.68  Aligned_cols=63  Identities=17%  Similarity=0.163  Sum_probs=53.9

Q ss_pred             HHHHHHhhccCCCCCchhHHHHHHHHHHHHhhCCCcCchHHHHHHHHhccCCcHHHHHHHHHHHHH
Q 015869          318 RDLYWEAVCGNSDGSKEKLEKAEELLLRCIEKNPFVGEPHVVLGQIYLAKGEFEEAEREAGKGLML  383 (399)
Q Consensus       318 rdlYWeav~~~~~~~~~~~d~a~~lL~~~i~~NP~VgEP~~vLAQ~~l~~gr~~eA~~~A~~gL~l  383 (399)
                      ...|+-+.|   -......+.|.+.++++++.||-..+.+..||.+|...|+|++|...-++++++
T Consensus        43 ~~~~~~~~~---~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~  105 (228)
T 4i17_A           43 VTAYNCGVC---ADNIKKYKEAADYFDIAIKKNYNLANAYIGKSAAYRDMKNNQEYIATLTEGIKA  105 (228)
T ss_dssp             HHHHHHHHH---HHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHH---HHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence            356666666   223445889999999999999999999999999999999999999999999876

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=94.96  E-value=0.057  Score=39.07  Aligned_cols=49  Identities=29%  Similarity=0.433  Sum_probs=44.9

Q ss_pred             hHHHHHHHHHHHHhhCCCcCchHHHHHHHHhccCCcHHHHHHHHHHHHH
Q 015869          335 KLEKAEELLLRCIEKNPFVGEPHVVLGQIYLAKGEFEEAEREAGKGLML  383 (399)
Q Consensus       335 ~~d~a~~lL~~~i~~NP~VgEP~~vLAQ~~l~~gr~~eA~~~A~~gL~l  383 (399)
                      ..+.|...+++++..+|-....+..+|++|...|++++|....+++++.
T Consensus        50 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~   98 (136)
T 2fo7_A           50 DYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL   98 (136)
T ss_dssp             CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence            4788999999999999998888999999999999999999998888765

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=94.90  E-value=0.037  Score=47.38  Aligned_cols=65  Identities=14%  Similarity=0.147  Sum_probs=54.8

Q ss_pred             HHHHHHHHhhccCCCCCchhHHHHHHHHHHHHhhCCCc---CchHHHHHHHHhccCCcHHHHHHHHHHHHH
Q 015869          316 EARDLYWEAVCGNSDGSKEKLEKAEELLLRCIEKNPFV---GEPHVVLGQIYLAKGEFEEAEREAGKGLML  383 (399)
Q Consensus       316 aArdlYWeav~~~~~~~~~~~d~a~~lL~~~i~~NP~V---gEP~~vLAQ~~l~~gr~~eA~~~A~~gL~l  383 (399)
                      .+..+|+.+.+   --.....+.|.+.++++++.+|--   .+-+.-||.+|...|+|++|...-++++++
T Consensus        14 ~~~~~~~~a~~---~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~   81 (261)
T 3qky_A           14 SPQEAFERAME---FYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQI   81 (261)
T ss_dssp             SHHHHHHHHHH---HHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHH---HHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHH
Confidence            35678888876   223345899999999999997765   888999999999999999999999998876

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=94.84  E-value=0.032  Score=44.69  Aligned_cols=58  Identities=12%  Similarity=0.047  Sum_probs=51.0

Q ss_pred             hhHHHHHHHHHHHHhhCCCcCchH------HHHHHHHhccCCcHHHHHHHHHHHHHHHhhCCCc
Q 015869          334 EKLEKAEELLLRCIEKNPFVGEPH------VVLGQIYLAKGEFEEAEREAGKGLMLLLEWGSPW  391 (399)
Q Consensus       334 ~~~d~a~~lL~~~i~~NP~VgEP~------~vLAQ~~l~~gr~~eA~~~A~~gL~ll~~WG~~W  391 (399)
                      ...+.|.+.++++++..+-.|.|.      ..||.+|...|++++|....++++++..+-|..+
T Consensus       121 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  184 (203)
T 3gw4_A          121 GDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARDIFAELEDSE  184 (203)
T ss_dssp             TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             CCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHH
Confidence            347889999999998877777777      6899999999999999999999999998888765

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=94.80  E-value=0.042  Score=46.68  Aligned_cols=50  Identities=20%  Similarity=0.164  Sum_probs=46.7

Q ss_pred             hhHHHHHHHHHHHHhhCCCcCchHHHHHHHHhccCCcHHHHHHHHHHHHH
Q 015869          334 EKLEKAEELLLRCIEKNPFVGEPHVVLGQIYLAKGEFEEAEREAGKGLML  383 (399)
Q Consensus       334 ~~~d~a~~lL~~~i~~NP~VgEP~~vLAQ~~l~~gr~~eA~~~A~~gL~l  383 (399)
                      ...+.|...++++|+.||--.+.+..||.+|...|++++|....++++++
T Consensus        19 g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~   68 (217)
T 2pl2_A           19 GRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVAR   68 (217)
T ss_dssp             TCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            34788999999999999999999999999999999999999999999876

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=94.76  E-value=0.021  Score=45.84  Aligned_cols=48  Identities=13%  Similarity=0.121  Sum_probs=28.0

Q ss_pred             HHHHHHHHHHHHhhCCCcCchHHHHHHH-HhccCCc--HHHHHHHHHHHHH
Q 015869          336 LEKAEELLLRCIEKNPFVGEPHVVLGQI-YLAKGEF--EEAEREAGKGLML  383 (399)
Q Consensus       336 ~d~a~~lL~~~i~~NP~VgEP~~vLAQ~-~l~~gr~--~eA~~~A~~gL~l  383 (399)
                      .+.|...++++++.+|--.+.+.-+|++ |...|++  ++|....++++++
T Consensus        60 ~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~A~~~~~~al~~  110 (177)
T 2e2e_A           60 YSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQTRAMIDKALAL  110 (177)
T ss_dssp             HHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHh
Confidence            4556666666666666555555556666 5556665  6666555555543

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=94.75  E-value=0.008  Score=45.99  Aligned_cols=48  Identities=21%  Similarity=0.245  Sum_probs=43.6

Q ss_pred             HHHHHHHHHHHHhh---CCCcCchHHHHHHHHhccCCcHHHHHHHHHHHHH
Q 015869          336 LEKAEELLLRCIEK---NPFVGEPHVVLGQIYLAKGEFEEAEREAGKGLML  383 (399)
Q Consensus       336 ~d~a~~lL~~~i~~---NP~VgEP~~vLAQ~~l~~gr~~eA~~~A~~gL~l  383 (399)
                      .++|++.++++++.   +|-..+.+.-||.+|...|+|++|...-++++++
T Consensus         6 ~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~   56 (117)
T 3k9i_A            6 EAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQ   56 (117)
T ss_dssp             -CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            56799999999999   4888899999999999999999999999999876

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=94.75  E-value=0.058  Score=41.55  Aligned_cols=51  Identities=22%  Similarity=0.197  Sum_probs=46.9

Q ss_pred             hhHHHHHHHHHHHHhhCCCcCchHHHHHHHHhccCCcHHHHHHHHHHHHHH
Q 015869          334 EKLEKAEELLLRCIEKNPFVGEPHVVLGQIYLAKGEFEEAEREAGKGLMLL  384 (399)
Q Consensus       334 ~~~d~a~~lL~~~i~~NP~VgEP~~vLAQ~~l~~gr~~eA~~~A~~gL~ll  384 (399)
                      ...+.|.+.++++++.+|--.+.+..||.+|...|++++|....++++++-
T Consensus       124 ~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~  174 (186)
T 3as5_A          124 GRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKKANELD  174 (186)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence            347899999999999999999999999999999999999999999998865

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=94.63  E-value=0.046  Score=43.85  Aligned_cols=47  Identities=9%  Similarity=0.065  Sum_probs=44.2

Q ss_pred             HHHHHHHHHHHhhCCCcCchHHHHHHHHhccCCcHHHHHHHHHHHHH
Q 015869          337 EKAEELLLRCIEKNPFVGEPHVVLGQIYLAKGEFEEAEREAGKGLML  383 (399)
Q Consensus       337 d~a~~lL~~~i~~NP~VgEP~~vLAQ~~l~~gr~~eA~~~A~~gL~l  383 (399)
                      +.|...++++++.||--.+.+..||++|...|+|++|...-.+++++
T Consensus        98 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  144 (177)
T 2e2e_A           98 AQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDL  144 (177)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence            78999999999999999999999999999999999999999888765

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=94.49  E-value=0.073  Score=40.98  Aligned_cols=50  Identities=30%  Similarity=0.305  Sum_probs=45.7

Q ss_pred             hhHHHHHHHHHHHHhhCCCcCchHHHHHHHHhccCCcHHHHHHHHHHHHH
Q 015869          334 EKLEKAEELLLRCIEKNPFVGEPHVVLGQIYLAKGEFEEAEREAGKGLML  383 (399)
Q Consensus       334 ~~~d~a~~lL~~~i~~NP~VgEP~~vLAQ~~l~~gr~~eA~~~A~~gL~l  383 (399)
                      ...+.|.+.++++++.+|-..+.+..+|++|...|++++|....+++++.
T Consensus        90 ~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~  139 (186)
T 3as5_A           90 QKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGL  139 (186)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhc
Confidence            34788999999999999999999999999999999999999999988875

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=94.42  E-value=0.066  Score=44.13  Aligned_cols=64  Identities=19%  Similarity=0.084  Sum_probs=52.9

Q ss_pred             HHHHHHHhhccCCCCCchhHHHHHHHHHHHHhhCCCcCchHHHHHHHHhccCCcHHHHHHHHHHHHH
Q 015869          317 ARDLYWEAVCGNSDGSKEKLEKAEELLLRCIEKNPFVGEPHVVLGQIYLAKGEFEEAEREAGKGLML  383 (399)
Q Consensus       317 ArdlYWeav~~~~~~~~~~~d~a~~lL~~~i~~NP~VgEP~~vLAQ~~l~~gr~~eA~~~A~~gL~l  383 (399)
                      +.-+|.-+.|   -......+.|...+.++++.+|-..+.+..+|++|...|+|++|...-.+++++
T Consensus        88 ~~~~~~la~~---~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~  151 (198)
T 2fbn_A           88 ISCNLNLATC---YNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASL  151 (198)
T ss_dssp             HHHHHHHHHH---HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHH---HHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence            3445555555   223344889999999999999999999999999999999999999999998876

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=94.38  E-value=0.024  Score=52.30  Aligned_cols=81  Identities=16%  Similarity=0.117  Sum_probs=54.7

Q ss_pred             cccccccccCChhhHHHHHHHHHHhhccCCCCCchhHHHHHHHHHHHHhhCCCcCchHHHHHHHHhccCCcHHHHHHHHH
Q 015869          300 PVFENCTRILDAKEQIEARDLYWEAVCGNSDGSKEKLEKAEELLLRCIEKNPFVGEPHVVLGQIYLAKGEFEEAEREAGK  379 (399)
Q Consensus       300 PVF~~CT~vL~~~dq~aArdlYWeav~~~~~~~~~~~d~a~~lL~~~i~~NP~VgEP~~vLAQ~~l~~gr~~eA~~~A~~  379 (399)
                      |.|+.+..+-.......|..+|=.+.+   -......+.|.+.++++++.+|-..+.+..+|.+|...|+|++|....++
T Consensus         8 ~~~~~~~~~~~~~~~~~a~~~~~~g~~---~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~   84 (537)
T 3fp2_A            8 PDIAQLKGLSPSQRQAYAVQLKNRGNH---FFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTK   84 (537)
T ss_dssp             CCHHHHTTSCHHHHHHHHHHHHHHHHH---HHHTTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             chHHhhcCCCcchhHHHHHHHHHHHHH---HHHhccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            445555554444444455666655554   11223366788888888888888888888888888888888888888887


Q ss_pred             HHHH
Q 015869          380 GLML  383 (399)
Q Consensus       380 gL~l  383 (399)
                      ++++
T Consensus        85 al~~   88 (537)
T 3fp2_A           85 ALEI   88 (537)
T ss_dssp             HHHH
T ss_pred             HHhc
Confidence            7765

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=94.34  E-value=0.06  Score=44.87  Aligned_cols=47  Identities=17%  Similarity=0.089  Sum_probs=24.2

Q ss_pred             HHHHHHHHHHHHhhCCCcCchHHHHHHHHhccCCcHHHHHHHHHHHH
Q 015869          336 LEKAEELLLRCIEKNPFVGEPHVVLGQIYLAKGEFEEAEREAGKGLM  382 (399)
Q Consensus       336 ~d~a~~lL~~~i~~NP~VgEP~~vLAQ~~l~~gr~~eA~~~A~~gL~  382 (399)
                      .+.|.+.++++++.+|--.+.+..||++|...|++++|....+++++
T Consensus        93 ~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~  139 (275)
T 1xnf_A           93 FDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQ  139 (275)
T ss_dssp             HHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence            34455555555555555455555555555555555555555554444

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=94.32  E-value=0.061  Score=43.83  Aligned_cols=50  Identities=16%  Similarity=0.350  Sum_probs=46.6

Q ss_pred             hhHHHHHHHHHHHHhhCCCcCchHHHHHHHHhccCCcHHHHHHHHHHHHH
Q 015869          334 EKLEKAEELLLRCIEKNPFVGEPHVVLGQIYLAKGEFEEAEREAGKGLML  383 (399)
Q Consensus       334 ~~~d~a~~lL~~~i~~NP~VgEP~~vLAQ~~l~~gr~~eA~~~A~~gL~l  383 (399)
                      ...+.|.+.+.++++.||-..+.+..+|.+|...|+|++|...-.+++++
T Consensus        51 g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~  100 (213)
T 1hh8_A           51 KNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQ  100 (213)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred             CCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcccHHHHHHHHHHHHHh
Confidence            44889999999999999999999999999999999999999999999874

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=94.24  E-value=0.023  Score=46.51  Aligned_cols=48  Identities=23%  Similarity=0.290  Sum_probs=39.7

Q ss_pred             HHHHHHHHHHHHhhCCCcCchHHHHHHHHhccCCcHHHHHHHHHHHHH
Q 015869          336 LEKAEELLLRCIEKNPFVGEPHVVLGQIYLAKGEFEEAEREAGKGLML  383 (399)
Q Consensus       336 ~d~a~~lL~~~i~~NP~VgEP~~vLAQ~~l~~gr~~eA~~~A~~gL~l  383 (399)
                      .+.|.+.++++++.+|--.+.+..+|++|...|++++|....++++++
T Consensus        73 ~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~  120 (243)
T 2q7f_A           73 LERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRA  120 (243)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence            677888888888888888888888888888888888888888877765

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=94.20  E-value=0.042  Score=46.37  Aligned_cols=50  Identities=16%  Similarity=-0.025  Sum_probs=46.2

Q ss_pred             hhHHHHHHHHHHHHhhCCCcCchHHH----------------HHHHHhccCCcHHHHHHHHHHHHH
Q 015869          334 EKLEKAEELLLRCIEKNPFVGEPHVV----------------LGQIYLAKGEFEEAEREAGKGLML  383 (399)
Q Consensus       334 ~~~d~a~~lL~~~i~~NP~VgEP~~v----------------LAQ~~l~~gr~~eA~~~A~~gL~l  383 (399)
                      ...+.|.+.++++++.||--.+.+..                ||.+|...|+|++|...-+++|++
T Consensus        18 g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~   83 (208)
T 3urz_A           18 GQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQK   83 (208)
T ss_dssp             TCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence            34889999999999999998888999                999999999999999999999876

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=94.17  E-value=0.095  Score=43.65  Aligned_cols=49  Identities=20%  Similarity=0.150  Sum_probs=33.4

Q ss_pred             hHHHHHHHHHHHHhhCCCcCchHHHHHHHHhccCCcHHHHHHHHHHHHH
Q 015869          335 KLEKAEELLLRCIEKNPFVGEPHVVLGQIYLAKGEFEEAEREAGKGLML  383 (399)
Q Consensus       335 ~~d~a~~lL~~~i~~NP~VgEP~~vLAQ~~l~~gr~~eA~~~A~~gL~l  383 (399)
                      ..+.|.+.++++++.+|-..+.+..||.+|...|+|++|...-++++++
T Consensus        58 ~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~  106 (275)
T 1xnf_A           58 LRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLEL  106 (275)
T ss_dssp             CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence            3566777777777777766666677777777777777777666666654

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=94.06  E-value=0.055  Score=45.62  Aligned_cols=81  Identities=16%  Similarity=0.101  Sum_probs=65.0

Q ss_pred             cccccCChhhHHHHHHHHHHhhccCCCCCchhHHHHHHHHHHHHhh--------CCCcCchHHHHHHHHhccCCcHHHHH
Q 015869          304 NCTRILDAKEQIEARDLYWEAVCGNSDGSKEKLEKAEELLLRCIEK--------NPFVGEPHVVLGQIYLAKGEFEEAER  375 (399)
Q Consensus       304 ~CT~vL~~~dq~aArdlYWeav~~~~~~~~~~~d~a~~lL~~~i~~--------NP~VgEP~~vLAQ~~l~~gr~~eA~~  375 (399)
                      .+.+...+.+...++.++.-+.+   -......+.|.++++++++.        +|....-+..||.+|...|++++|..
T Consensus        14 ~~~q~~~~~~~~~~~~~~~l~~~---~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~   90 (311)
T 3nf1_A           14 LYFQGGGYEIPARLRTLHNLVIQ---YASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAAN   90 (311)
T ss_dssp             GSCSSSCTTSCHHHHHHHHHHHH---HHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             ccccCCCCcchHHHHHHHHHHHH---HHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHH
Confidence            45566677777777777776665   22334488999999999994        88889999999999999999999999


Q ss_pred             HHHHHHHHHHhh
Q 015869          376 EAGKGLMLLLEW  387 (399)
Q Consensus       376 ~A~~gL~ll~~W  387 (399)
                      ..++++++...-
T Consensus        91 ~~~~al~~~~~~  102 (311)
T 3nf1_A           91 LLNDALAIREKT  102 (311)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            999999886544

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=94.02  E-value=0.052  Score=44.76  Aligned_cols=69  Identities=28%  Similarity=0.237  Sum_probs=54.5

Q ss_pred             HHHHHHHHhhccCCCCCchhHHHHHHHHHHHHhh--------CCCcCchHHHHHHHHhccCCcHHHHHHHHHHHHHHHhh
Q 015869          316 EARDLYWEAVCGNSDGSKEKLEKAEELLLRCIEK--------NPFVGEPHVVLGQIYLAKGEFEEAEREAGKGLMLLLEW  387 (399)
Q Consensus       316 aArdlYWeav~~~~~~~~~~~d~a~~lL~~~i~~--------NP~VgEP~~vLAQ~~l~~gr~~eA~~~A~~gL~ll~~W  387 (399)
                      .+..++.-+.+   -......+.|.+.++++++.        +|...+.+..||.+|...|++++|....++++++...-
T Consensus        84 ~~~~~~~l~~~---~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  160 (283)
T 3edt_B           84 VAATLNNLAVL---YGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATR  160 (283)
T ss_dssp             HHHHHHHHHHH---HHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHH---HHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Confidence            34444444443   12334488999999999988        79999999999999999999999999999999985443

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=94.02  E-value=0.054  Score=44.08  Aligned_cols=49  Identities=22%  Similarity=0.123  Sum_probs=30.7

Q ss_pred             HHHHHHHHHHHHhhCCCcC--chHHHHHHHHhccCCcHHHHHHHHHHHHHH
Q 015869          336 LEKAEELLLRCIEKNPFVG--EPHVVLGQIYLAKGEFEEAEREAGKGLMLL  384 (399)
Q Consensus       336 ~d~a~~lL~~~i~~NP~Vg--EP~~vLAQ~~l~~gr~~eA~~~A~~gL~ll  384 (399)
                      .+.|.+.++++++.||-..  +.+..|+++|...|++++|...-.++|..+
T Consensus       124 ~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~al~~~  174 (176)
T 2r5s_A          124 DEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYRRQLYSI  174 (176)
T ss_dssp             HHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHH
Confidence            5566666666666666543  355666666666666666666666665544

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=94.01  E-value=0.093  Score=42.95  Aligned_cols=55  Identities=16%  Similarity=0.042  Sum_probs=49.5

Q ss_pred             hhHHHHHHHHHHHHhhCCCcCchHHHHHHHHhccCCcHHHHHHHHHHHHHHHhhC
Q 015869          334 EKLEKAEELLLRCIEKNPFVGEPHVVLGQIYLAKGEFEEAEREAGKGLMLLLEWG  388 (399)
Q Consensus       334 ~~~d~a~~lL~~~i~~NP~VgEP~~vLAQ~~l~~gr~~eA~~~A~~gL~ll~~WG  388 (399)
                      ...+.|...+.++++.+|-..+-+..+|++|...|++++|...-++++++--+.+
T Consensus       187 ~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~  241 (258)
T 3uq3_A          187 MSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVN  241 (258)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhChhhc
Confidence            3478899999999999999999999999999999999999999999999875544

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=93.79  E-value=0.11  Score=41.52  Aligned_cols=47  Identities=19%  Similarity=0.145  Sum_probs=32.7

Q ss_pred             HHHHHHHHHHHHhhCCCcCchHHHHHHHHhcc-CCcHHHHHHHHHHHH
Q 015869          336 LEKAEELLLRCIEKNPFVGEPHVVLGQIYLAK-GEFEEAEREAGKGLM  382 (399)
Q Consensus       336 ~d~a~~lL~~~i~~NP~VgEP~~vLAQ~~l~~-gr~~eA~~~A~~gL~  382 (399)
                      .+.|.+.++++++.+|-..+.+..+|++|... |++++|....+++++
T Consensus        58 ~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~  105 (225)
T 2vq2_A           58 NDKAQESFRQALSIKPDSAEINNNYGWFLCGRLNRPAESMAYFDKALA  105 (225)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHT
T ss_pred             hHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHc
Confidence            56677777777777776666677777777777 777777766666654

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=93.78  E-value=0.062  Score=39.25  Aligned_cols=50  Identities=20%  Similarity=0.238  Sum_probs=44.4

Q ss_pred             hhHHHHHHHHHHHHhhCCCc-------CchHHHHHHHHhccCCcHHHHHHHHHHHHH
Q 015869          334 EKLEKAEELLLRCIEKNPFV-------GEPHVVLGQIYLAKGEFEEAEREAGKGLML  383 (399)
Q Consensus       334 ~~~d~a~~lL~~~i~~NP~V-------gEP~~vLAQ~~l~~gr~~eA~~~A~~gL~l  383 (399)
                      ...+.|...+.++++.+|-.       .+.+.-+|.+|...|++++|...-++++++
T Consensus        52 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~  108 (131)
T 1elr_A           52 GDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAE  108 (131)
T ss_dssp             TCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence            34788999999999998876       778889999999999999999999988875

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=93.77  E-value=0.061  Score=44.68  Aligned_cols=48  Identities=25%  Similarity=0.315  Sum_probs=37.6

Q ss_pred             HHHHHHHHHHHHhhCCCcCchHHHHHHHHhccCCcHHHHHHHHHHHHH
Q 015869          336 LEKAEELLLRCIEKNPFVGEPHVVLGQIYLAKGEFEEAEREAGKGLML  383 (399)
Q Consensus       336 ~d~a~~lL~~~i~~NP~VgEP~~vLAQ~~l~~gr~~eA~~~A~~gL~l  383 (399)
                      .+.|.+.++++++.+|-..+-+..||.+|...|++++|....++++++
T Consensus        53 ~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~  100 (252)
T 2ho1_A           53 TEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALAS  100 (252)
T ss_dssp             TGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            566778888888888877777788888888888888888877777665

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=93.74  E-value=0.053  Score=43.26  Aligned_cols=49  Identities=18%  Similarity=0.188  Sum_probs=44.5

Q ss_pred             hHHHHHHHHHHHHhh------------------CCCcCchHHHHHHHHhccCCcHHHHHHHHHHHHH
Q 015869          335 KLEKAEELLLRCIEK------------------NPFVGEPHVVLGQIYLAKGEFEEAEREAGKGLML  383 (399)
Q Consensus       335 ~~d~a~~lL~~~i~~------------------NP~VgEP~~vLAQ~~l~~gr~~eA~~~A~~gL~l  383 (399)
                      ..+.|.....++|+.                  +|.....+.-+|++|+..|+|++|...+.++|++
T Consensus        26 ~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~   92 (162)
T 3rkv_A           26 DYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKR   92 (162)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhc
Confidence            477888889999988                  8888889999999999999999999999999986

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=93.57  E-value=0.051  Score=44.85  Aligned_cols=53  Identities=28%  Similarity=0.343  Sum_probs=48.2

Q ss_pred             hhHHHHHHHHHHHHhh--------CCCcCchHHHHHHHHhccCCcHHHHHHHHHHHHHHHh
Q 015869          334 EKLEKAEELLLRCIEK--------NPFVGEPHVVLGQIYLAKGEFEEAEREAGKGLMLLLE  386 (399)
Q Consensus       334 ~~~d~a~~lL~~~i~~--------NP~VgEP~~vLAQ~~l~~gr~~eA~~~A~~gL~ll~~  386 (399)
                      ...+.|.+.++++++.        +|.....+..||++|...|++++|....++++++.-.
T Consensus       141 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~  201 (283)
T 3edt_B          141 GKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHE  201 (283)
T ss_dssp             TCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence            4488999999999999        8999999999999999999999999999999998543

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=93.50  E-value=0.13  Score=42.07  Aligned_cols=50  Identities=14%  Similarity=0.048  Sum_probs=46.3

Q ss_pred             hhHHHHHHHHHHHHhhCCCcCchHHHHHHHHhccCCcHHHHHHHHHHHHH
Q 015869          334 EKLEKAEELLLRCIEKNPFVGEPHVVLGQIYLAKGEFEEAEREAGKGLML  383 (399)
Q Consensus       334 ~~~d~a~~lL~~~i~~NP~VgEP~~vLAQ~~l~~gr~~eA~~~A~~gL~l  383 (399)
                      ...+.|.+.++++++.+|-..+.+..||.+|...|++++|.....+++++
T Consensus       153 ~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~  202 (258)
T 3uq3_A          153 SDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEK  202 (258)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence            34789999999999999999999999999999999999999999998875

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=93.44  E-value=0.12  Score=41.32  Aligned_cols=49  Identities=18%  Similarity=0.165  Sum_probs=42.2

Q ss_pred             hHHHHHHHHHHHHhhCCCcCchHHHHHHHHhccCCcHHHHHHHHHHHHH
Q 015869          335 KLEKAEELLLRCIEKNPFVGEPHVVLGQIYLAKGEFEEAEREAGKGLML  383 (399)
Q Consensus       335 ~~d~a~~lL~~~i~~NP~VgEP~~vLAQ~~l~~gr~~eA~~~A~~gL~l  383 (399)
                      ..+.|.+.++++++.+|-..+-+..||++|...|++++|....++++++
T Consensus       128 ~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~  176 (225)
T 2vq2_A          128 QFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGDADYYFKKYQSR  176 (225)
T ss_dssp             CHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            3778889999999999888888888999999999999998888887775

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=93.41  E-value=0.14  Score=41.83  Aligned_cols=72  Identities=18%  Similarity=0.178  Sum_probs=56.0

Q ss_pred             hhHHHHHHHHHHhhccCCCC------------CchhHHHHHHHHHHHHhhCCCcCchHHHHHHHHhccCCcHHHHHHHHH
Q 015869          312 KEQIEARDLYWEAVCGNSDG------------SKEKLEKAEELLLRCIEKNPFVGEPHVVLGQIYLAKGEFEEAEREAGK  379 (399)
Q Consensus       312 ~dq~aArdlYWeav~~~~~~------------~~~~~d~a~~lL~~~i~~NP~VgEP~~vLAQ~~l~~gr~~eA~~~A~~  379 (399)
                      ++-..|...|-+++.-+.+.            .....+.|.+.++++++.+|--.+.+..+|++|...|++++|....++
T Consensus        71 ~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~  150 (243)
T 2q7f_A           71 NELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQR  150 (243)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence            44455666666665421111            123378899999999999999999999999999999999999999999


Q ss_pred             HHHH
Q 015869          380 GLML  383 (399)
Q Consensus       380 gL~l  383 (399)
                      ++++
T Consensus       151 ~~~~  154 (243)
T 2q7f_A          151 AVEL  154 (243)
T ss_dssp             HHHH
T ss_pred             HHHh
Confidence            8876

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=93.39  E-value=0.12  Score=41.94  Aligned_cols=47  Identities=23%  Similarity=-0.003  Sum_probs=43.0

Q ss_pred             HHHHHHHHHHhhCCCcCchHHHHHHHHhccCCcHHHHHHHHHHHHHH
Q 015869          338 KAEELLLRCIEKNPFVGEPHVVLGQIYLAKGEFEEAEREAGKGLMLL  384 (399)
Q Consensus       338 ~a~~lL~~~i~~NP~VgEP~~vLAQ~~l~~gr~~eA~~~A~~gL~ll  384 (399)
                      .|.+.++++++.||--.+.+..||++|...|++++|...-++++++-
T Consensus        92 ~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~  138 (176)
T 2r5s_A           92 PELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVN  138 (176)
T ss_dssp             HHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred             hHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC
Confidence            37889999999999999999999999999999999999998887653

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=93.38  E-value=0.11  Score=45.86  Aligned_cols=53  Identities=25%  Similarity=0.238  Sum_probs=48.5

Q ss_pred             hhHHHHHHHHHHHHhhCCCcCchHHHHHHHHhccCCcHHHHHHHHHHHHHHHh
Q 015869          334 EKLEKAEELLLRCIEKNPFVGEPHVVLGQIYLAKGEFEEAEREAGKGLMLLLE  386 (399)
Q Consensus       334 ~~~d~a~~lL~~~i~~NP~VgEP~~vLAQ~~l~~gr~~eA~~~A~~gL~ll~~  386 (399)
                      ...+.|.+.++++++.+|-..+.+..||++|...|++++|...-++++++--.
T Consensus       261 g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~  313 (365)
T 4eqf_A          261 DRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRK  313 (365)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHC
T ss_pred             CCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc
Confidence            34789999999999999999999999999999999999999999999988644

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=93.26  E-value=0.12  Score=40.48  Aligned_cols=48  Identities=15%  Similarity=0.079  Sum_probs=43.6

Q ss_pred             HHHHHHHHHHHHhhCCCcCchHHHHHHHHhccCCcHHHHHHHHHHHHH
Q 015869          336 LEKAEELLLRCIEKNPFVGEPHVVLGQIYLAKGEFEEAEREAGKGLML  383 (399)
Q Consensus       336 ~d~a~~lL~~~i~~NP~VgEP~~vLAQ~~l~~gr~~eA~~~A~~gL~l  383 (399)
                      .+.|..+|+++++.+|--....+.|+.+|+..|+|++|...=++.|+.
T Consensus        25 ~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~   72 (93)
T 3bee_A           25 TDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDS   72 (93)
T ss_dssp             CHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred             CHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            478999999999999999999999999999999999999887766654

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=93.19  E-value=0.22  Score=40.99  Aligned_cols=65  Identities=17%  Similarity=0.063  Sum_probs=50.7

Q ss_pred             HHHHHHHHhhccCCCCCchhHHHHHHHHHHHHhhCCCcC----------------chHHHHHHHHhccCCcHHHHHHHHH
Q 015869          316 EARDLYWEAVCGNSDGSKEKLEKAEELLLRCIEKNPFVG----------------EPHVVLGQIYLAKGEFEEAEREAGK  379 (399)
Q Consensus       316 aArdlYWeav~~~~~~~~~~~d~a~~lL~~~i~~NP~Vg----------------EP~~vLAQ~~l~~gr~~eA~~~A~~  379 (399)
                      .+..++-.+.+   -......+.|.+.+.++++.+|--.                +-+.-+|.+|+..|+|++|.....+
T Consensus        37 ~~~~~~~~g~~---~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~  113 (198)
T 2fbn_A           37 SAFDIKEEGNE---FFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASK  113 (198)
T ss_dssp             HHHHHHHHHHH---HHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHH---HHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence            44444444433   1123448899999999999988766                6778899999999999999999999


Q ss_pred             HHHH
Q 015869          380 GLML  383 (399)
Q Consensus       380 gL~l  383 (399)
                      ++++
T Consensus       114 al~~  117 (198)
T 2fbn_A          114 VLKI  117 (198)
T ss_dssp             HHHH
T ss_pred             HHHh
Confidence            9886

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=93.13  E-value=0.16  Score=42.49  Aligned_cols=47  Identities=11%  Similarity=0.003  Sum_probs=32.8

Q ss_pred             HHHHHHHHHHHHhhCCCcCchHHHHHHHHhccCCcHHHHHHHHHHHH
Q 015869          336 LEKAEELLLRCIEKNPFVGEPHVVLGQIYLAKGEFEEAEREAGKGLM  382 (399)
Q Consensus       336 ~d~a~~lL~~~i~~NP~VgEP~~vLAQ~~l~~gr~~eA~~~A~~gL~  382 (399)
                      .+.|...++++++.+|--.+-+..||.+|...|+|++|.....++++
T Consensus        19 ~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~   65 (272)
T 3u4t_A           19 YAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFS   65 (272)
T ss_dssp             HHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence            56677777777777777666777777777777777777766666655

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=93.04  E-value=0.12  Score=46.26  Aligned_cols=54  Identities=24%  Similarity=0.211  Sum_probs=49.3

Q ss_pred             hhHHHHHHHHHHHHhhCCCcCchHHHHHHHHhccCCcHHHHHHHHHHHHHHHhh
Q 015869          334 EKLEKAEELLLRCIEKNPFVGEPHVVLGQIYLAKGEFEEAEREAGKGLMLLLEW  387 (399)
Q Consensus       334 ~~~d~a~~lL~~~i~~NP~VgEP~~vLAQ~~l~~gr~~eA~~~A~~gL~ll~~W  387 (399)
                      ...+.|.+.++++++.+|--...+..||++|...|+|++|...-.+++++--+-
T Consensus        52 ~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~  105 (281)
T 2c2l_A           52 QQPEQALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQ  105 (281)
T ss_dssp             TCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred             cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc
Confidence            348899999999999999999999999999999999999999999999886543

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=93.02  E-value=0.11  Score=46.33  Aligned_cols=45  Identities=20%  Similarity=0.019  Sum_probs=28.6

Q ss_pred             HHHHHHHHHhhCCCcCchHHHHHHHHhccCCcHHHHHHHHHHHHH
Q 015869          339 AEELLLRCIEKNPFVGEPHVVLGQIYLAKGEFEEAEREAGKGLML  383 (399)
Q Consensus       339 a~~lL~~~i~~NP~VgEP~~vLAQ~~l~~gr~~eA~~~A~~gL~l  383 (399)
                      |.+.+++++++||=-.+.++-||.+|...|++++|...-.++|++
T Consensus       204 a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~  248 (287)
T 3qou_A          204 EIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRX  248 (287)
T ss_dssp             HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhc
Confidence            555666666666666666666666666666666666666665554

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=92.98  E-value=0.14  Score=44.78  Aligned_cols=54  Identities=20%  Similarity=0.123  Sum_probs=48.8

Q ss_pred             hhHHHHHHHHHHHHhhCCCcCchHHHHHHHHhccCCcHHHHHHHHHHHHHHHhh
Q 015869          334 EKLEKAEELLLRCIEKNPFVGEPHVVLGQIYLAKGEFEEAEREAGKGLMLLLEW  387 (399)
Q Consensus       334 ~~~d~a~~lL~~~i~~NP~VgEP~~vLAQ~~l~~gr~~eA~~~A~~gL~ll~~W  387 (399)
                      ...+.|.+.++++++.+|-..+.+..||++|...|++++|...-++++++--.-
T Consensus       265 g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~  318 (368)
T 1fch_A          265 NQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKS  318 (368)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC
T ss_pred             CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence            347889999999999999999999999999999999999999999999876554

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=92.88  E-value=0.16  Score=44.93  Aligned_cols=58  Identities=17%  Similarity=0.109  Sum_probs=50.3

Q ss_pred             hhHHHHHHHHHHHHhhCCCcCchHHHHHHHHhccCCcHHHHHHHHHHHHHHHhhCCCc
Q 015869          334 EKLEKAEELLLRCIEKNPFVGEPHVVLGQIYLAKGEFEEAEREAGKGLMLLLEWGSPW  391 (399)
Q Consensus       334 ~~~d~a~~lL~~~i~~NP~VgEP~~vLAQ~~l~~gr~~eA~~~A~~gL~ll~~WG~~W  391 (399)
                      ...+.|.+.++++++.+|-..+.+..||++|...|+|++|...-++++++--.-...|
T Consensus       113 g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~  170 (365)
T 4eqf_A          113 ENEQAAIVALQRCLELQPNNLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLV  170 (365)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC-
T ss_pred             CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHhCccchHHH
Confidence            3478999999999999999999999999999999999999999999998755544443

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=92.73  E-value=0.2  Score=42.79  Aligned_cols=68  Identities=16%  Similarity=0.115  Sum_probs=50.7

Q ss_pred             HHHHHHHHhhccCC-----CCCchhHHHHHHHHHHHHhhCCCcCchH-----------------HHHHHHHhccCCcHHH
Q 015869          316 EARDLYWEAVCGNS-----DGSKEKLEKAEELLLRCIEKNPFVGEPH-----------------VVLGQIYLAKGEFEEA  373 (399)
Q Consensus       316 aArdlYWeav~~~~-----~~~~~~~d~a~~lL~~~i~~NP~VgEP~-----------------~vLAQ~~l~~gr~~eA  373 (399)
                      .+..+|.-+.|--.     .......+.|.+.++++++++|---...                 +-+|.+|...|+|++|
T Consensus        88 ~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A  167 (261)
T 3qky_A           88 VPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAA  167 (261)
T ss_dssp             HHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             hHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHH
Confidence            34556666665100     0014558899999999999998665555                 7789999999999999


Q ss_pred             HHHHHHHHHH
Q 015869          374 EREAGKGLML  383 (399)
Q Consensus       374 ~~~A~~gL~l  383 (399)
                      ...-+++++.
T Consensus       168 ~~~~~~~l~~  177 (261)
T 3qky_A          168 AVTYEAVFDA  177 (261)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9998888764

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=92.66  E-value=0.15  Score=45.55  Aligned_cols=48  Identities=21%  Similarity=0.201  Sum_probs=33.2

Q ss_pred             HHHHHHHHHHHHhhCCCcCchHHHHHHHHhccCCcHHHHHHHHHHHHH
Q 015869          336 LEKAEELLLRCIEKNPFVGEPHVVLGQIYLAKGEFEEAEREAGKGLML  383 (399)
Q Consensus       336 ~d~a~~lL~~~i~~NP~VgEP~~vLAQ~~l~~gr~~eA~~~A~~gL~l  383 (399)
                      .+.|.+.++++++.+|-..+.+.-|+.+|...|++++|...-++++++
T Consensus        83 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~  130 (388)
T 1w3b_A           83 LQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQY  130 (388)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            466777777777777766666777777777777777777666666654

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=92.65  E-value=0.094  Score=41.89  Aligned_cols=69  Identities=10%  Similarity=0.053  Sum_probs=54.4

Q ss_pred             HHHHHHHhhccCCCCCchhHHHHHHHHHHHHh------hCCCcCchHHHHHHHHhccCCcHHHHHHHHHHHHHHHhhC
Q 015869          317 ARDLYWEAVCGNSDGSKEKLEKAEELLLRCIE------KNPFVGEPHVVLGQIYLAKGEFEEAEREAGKGLMLLLEWG  388 (399)
Q Consensus       317 ArdlYWeav~~~~~~~~~~~d~a~~lL~~~i~------~NP~VgEP~~vLAQ~~l~~gr~~eA~~~A~~gL~ll~~WG  388 (399)
                      ++-++.-+.+   -......+.|.+.++++++      .+|....-+..||.+|...|+|++|.....+++++.-.-|
T Consensus        26 ~~~~~~l~~~---~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~  100 (203)
T 3gw4_A           26 SGARFMLGYV---YAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLP  100 (203)
T ss_dssp             HHHHHHHHHH---HHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC
T ss_pred             HHHHHHHHHH---HHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcC
Confidence            4444444443   1122347889999999999      6777778888999999999999999999999999987776

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=92.65  E-value=0.13  Score=53.92  Aligned_cols=48  Identities=13%  Similarity=0.137  Sum_probs=32.6

Q ss_pred             HHHHHHHHHHHHhhCCCcCchHHHHHHHHhccCCcHHHHHHHHHHHHH
Q 015869          336 LEKAEELLLRCIEKNPFVGEPHVVLGQIYLAKGEFEEAEREAGKGLML  383 (399)
Q Consensus       336 ~d~a~~lL~~~i~~NP~VgEP~~vLAQ~~l~~gr~~eA~~~A~~gL~l  383 (399)
                      .+.|.+.++++|++||=-.+-+.-|+.+|...|++++|...-+++|++
T Consensus        59 ~~eA~~~~~~Al~l~P~~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l  106 (723)
T 4gyw_A           59 LQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQI  106 (723)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            556666666677766666666666677776677777666666666654

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=92.63  E-value=0.17  Score=43.25  Aligned_cols=47  Identities=23%  Similarity=0.231  Sum_probs=29.9

Q ss_pred             HHHHHHHHHHHHhhCCCcCchHHHHHHHHhccCCcHHHHHHHHHHHH
Q 015869          336 LEKAEELLLRCIEKNPFVGEPHVVLGQIYLAKGEFEEAEREAGKGLM  382 (399)
Q Consensus       336 ~d~a~~lL~~~i~~NP~VgEP~~vLAQ~~l~~gr~~eA~~~A~~gL~  382 (399)
                      .+.|.+.++++++.+|--.+-+..+|++|...|++++|...-+++++
T Consensus        53 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~   99 (359)
T 3ieg_A           53 SKAALPDLTKVIALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLK   99 (359)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHhCCCcchHHHHHHHHHHHcCChHHHHHHHHHHHh
Confidence            45566666666666666666666666666666666666666655554

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=92.62  E-value=0.19  Score=42.66  Aligned_cols=48  Identities=17%  Similarity=0.099  Sum_probs=38.7

Q ss_pred             HHHHHHHHHHHHhhCCCcCchHHHHHHHHhccCCcHHHHHHHHHHHHH
Q 015869          336 LEKAEELLLRCIEKNPFVGEPHVVLGQIYLAKGEFEEAEREAGKGLML  383 (399)
Q Consensus       336 ~d~a~~lL~~~i~~NP~VgEP~~vLAQ~~l~~gr~~eA~~~A~~gL~l  383 (399)
                      .+.|.+.++++++.+|-..+++..+|.+|...|++++|.....+++++
T Consensus       141 ~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~  188 (330)
T 3hym_B          141 HDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSI  188 (330)
T ss_dssp             HHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence            567888888888888888888888888888888888888877777654

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=92.60  E-value=0.15  Score=49.84  Aligned_cols=76  Identities=21%  Similarity=0.101  Sum_probs=59.3

Q ss_pred             cCChhhHHHHHHHHHHhhccCCCC------------CchhHHHHHHHHHHHHhhCCCcCchHHHHHHHHhccCCcHHHHH
Q 015869          308 ILDAKEQIEARDLYWEAVCGNSDG------------SKEKLEKAEELLLRCIEKNPFVGEPHVVLGQIYLAKGEFEEAER  375 (399)
Q Consensus       308 vL~~~dq~aArdlYWeav~~~~~~------------~~~~~d~a~~lL~~~i~~NP~VgEP~~vLAQ~~l~~gr~~eA~~  375 (399)
                      -+..++-..|...|=+++.-+.+.            .....+.|.+.++++++.+|-..+.+.-||.+|...|+|++|..
T Consensus        16 ~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~   95 (477)
T 1wao_1           16 YFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALR   95 (477)
T ss_dssp             TTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred             HHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence            345566677777887777622221            12336789999999999999999999999999999999999999


Q ss_pred             HHHHHHHH
Q 015869          376 EAGKGLML  383 (399)
Q Consensus       376 ~A~~gL~l  383 (399)
                      .-++++++
T Consensus        96 ~~~~al~~  103 (477)
T 1wao_1           96 DYETVVKV  103 (477)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHh
Confidence            99998886

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=92.59  E-value=0.2  Score=42.53  Aligned_cols=51  Identities=12%  Similarity=0.162  Sum_probs=40.5

Q ss_pred             HHHHHHHHHHHHhhCCCcCchHHHHHHHHhccCCcHHHHHHHHHHHHHHHh
Q 015869          336 LEKAEELLLRCIEKNPFVGEPHVVLGQIYLAKGEFEEAEREAGKGLMLLLE  386 (399)
Q Consensus       336 ~d~a~~lL~~~i~~NP~VgEP~~vLAQ~~l~~gr~~eA~~~A~~gL~ll~~  386 (399)
                      .+.|.+.++++++.+|--.+.+..||++|+..|++++|....++++++.-.
T Consensus       222 ~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~  272 (327)
T 3cv0_A          222 PQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVG  272 (327)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCc
Confidence            677888888888888877778888888888888888888888887776543

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=92.56  E-value=0.2  Score=42.51  Aligned_cols=49  Identities=14%  Similarity=-0.130  Sum_probs=36.7

Q ss_pred             HHHHHHHHHHHHhhCCCcCchHHHHHHHHhccCCcHHHHHHHHHHHHHH
Q 015869          336 LEKAEELLLRCIEKNPFVGEPHVVLGQIYLAKGEFEEAEREAGKGLMLL  384 (399)
Q Consensus       336 ~d~a~~lL~~~i~~NP~VgEP~~vLAQ~~l~~gr~~eA~~~A~~gL~ll  384 (399)
                      .+.|.+.++++++.+|-..+.+..+|.+|...|++++|....++++++-
T Consensus        71 ~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~  119 (327)
T 3cv0_A           71 DGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQ  119 (327)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS
T ss_pred             HHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence            5667777777777777777777777777777777777777777776653

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=92.54  E-value=0.11  Score=50.13  Aligned_cols=64  Identities=23%  Similarity=0.287  Sum_probs=51.9

Q ss_pred             HHHHHHHhhccCCCCCchhH-HHHHHHHHHHHhhCCCcCchHHHHHHHHhccCCcHHHHHHHHHHHHH
Q 015869          317 ARDLYWEAVCGNSDGSKEKL-EKAEELLLRCIEKNPFVGEPHVVLGQIYLAKGEFEEAEREAGKGLML  383 (399)
Q Consensus       317 ArdlYWeav~~~~~~~~~~~-d~a~~lL~~~i~~NP~VgEP~~vLAQ~~l~~gr~~eA~~~A~~gL~l  383 (399)
                      +.-+|-.+.+   -...... +.|++.+++++++||--.+.+..||.+|...|+|++|....+++|++
T Consensus       102 a~~~~~lg~~---~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~  166 (474)
T 4abn_A          102 AQALMLKGKA---LNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTH  166 (474)
T ss_dssp             HHHHHHHHHH---HTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHH---HHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            3445555544   1123446 88999999999999999999999999999999999999999988864

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=92.43  E-value=0.1  Score=46.53  Aligned_cols=49  Identities=27%  Similarity=0.262  Sum_probs=45.7

Q ss_pred             hHHHHHHHHHHHHhhCCCcCchHHHHHHHHhccCCcHHHHHHHHHHHHH
Q 015869          335 KLEKAEELLLRCIEKNPFVGEPHVVLGQIYLAKGEFEEAEREAGKGLML  383 (399)
Q Consensus       335 ~~d~a~~lL~~~i~~NP~VgEP~~vLAQ~~l~~gr~~eA~~~A~~gL~l  383 (399)
                      ..+.|.+.+.++++.+|-..+-+.-+|++|...|+|++|....++++++
T Consensus        19 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~   67 (281)
T 2c2l_A           19 KYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALEL   67 (281)
T ss_dssp             CHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS
T ss_pred             CHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence            4788999999999999999999999999999999999999999988764

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=92.32  E-value=0.21  Score=42.42  Aligned_cols=54  Identities=19%  Similarity=0.165  Sum_probs=49.3

Q ss_pred             hHHHHHHHHHHHHhhCCCcCchHHHHHHHHhccCCcHHHHHHHHHHHHHHHhhC
Q 015869          335 KLEKAEELLLRCIEKNPFVGEPHVVLGQIYLAKGEFEEAEREAGKGLMLLLEWG  388 (399)
Q Consensus       335 ~~d~a~~lL~~~i~~NP~VgEP~~vLAQ~~l~~gr~~eA~~~A~~gL~ll~~WG  388 (399)
                      ..+.|.+.++++++.+|--.+.+..+|.+|...|++++|....++++++.-.-+
T Consensus       174 ~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~  227 (330)
T 3hym_B          174 NSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIG  227 (330)
T ss_dssp             CHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTS
T ss_pred             hHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhcc
Confidence            478899999999999999999999999999999999999999999999874444

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=92.28  E-value=0.27  Score=47.39  Aligned_cols=52  Identities=10%  Similarity=-0.027  Sum_probs=47.3

Q ss_pred             hhHHHHHHHHHHHHhhCC---CcCchHHHHHHHHhccCCcHHHHHHHHHHHHHHH
Q 015869          334 EKLEKAEELLLRCIEKNP---FVGEPHVVLGQIYLAKGEFEEAEREAGKGLMLLL  385 (399)
Q Consensus       334 ~~~d~a~~lL~~~i~~NP---~VgEP~~vLAQ~~l~~gr~~eA~~~A~~gL~ll~  385 (399)
                      ...+.|.+.++++++.||   -..+.+.-||.+|...|+|++|....++++++--
T Consensus       235 g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p  289 (474)
T 4abn_A          235 KISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDP  289 (474)
T ss_dssp             HHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred             chHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence            448899999999999999   8999999999999999999999999999988643

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=92.14  E-value=0.22  Score=43.44  Aligned_cols=84  Identities=21%  Similarity=0.126  Sum_probs=58.4

Q ss_pred             ccccccccCChhhHHHHHHHHHHhhccCCCCC------------chhHHHHHHHHHHHHhhCCCcCchHHHHHHHHhccC
Q 015869          301 VFENCTRILDAKEQIEARDLYWEAVCGNSDGS------------KEKLEKAEELLLRCIEKNPFVGEPHVVLGQIYLAKG  368 (399)
Q Consensus       301 VF~~CT~vL~~~dq~aArdlYWeav~~~~~~~------------~~~~d~a~~lL~~~i~~NP~VgEP~~vLAQ~~l~~g  368 (399)
                      .|......+..++-..|...|=+++.-+.+..            ....+.|.+.++++++.+|-..+.+..||.+|...|
T Consensus        67 ~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g  146 (368)
T 1fch_A           67 PFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNES  146 (368)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC
Confidence            34444444455566677777777765221111            122577888888888888888888888888888888


Q ss_pred             CcHHHHHHHHHHHHHH
Q 015869          369 EFEEAEREAGKGLMLL  384 (399)
Q Consensus       369 r~~eA~~~A~~gL~ll  384 (399)
                      ++++|....++++++.
T Consensus       147 ~~~~A~~~~~~~~~~~  162 (368)
T 1fch_A          147 LQRQACEILRDWLRYT  162 (368)
T ss_dssp             CHHHHHHHHHHHHHTS
T ss_pred             CHHHHHHHHHHHHHhC
Confidence            8888888888877754

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=92.11  E-value=0.17  Score=43.32  Aligned_cols=49  Identities=14%  Similarity=0.082  Sum_probs=44.8

Q ss_pred             hHHHHHHHHHHHHhhCCCcCchHHHHHHHHhccCCcHHHHHHHHHHHHH
Q 015869          335 KLEKAEELLLRCIEKNPFVGEPHVVLGQIYLAKGEFEEAEREAGKGLML  383 (399)
Q Consensus       335 ~~d~a~~lL~~~i~~NP~VgEP~~vLAQ~~l~~gr~~eA~~~A~~gL~l  383 (399)
                      ..+.|.+.++++++.+|--.+.+..+|.+|...|++++|...-++++++
T Consensus       287 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~  335 (359)
T 3ieg_A          287 KPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEH  335 (359)
T ss_dssp             CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred             CHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence            4788999999999999999999999999999999999999998888865

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=92.09  E-value=0.26  Score=41.75  Aligned_cols=63  Identities=16%  Similarity=0.133  Sum_probs=49.2

Q ss_pred             HHHHHHhhccCCCCCchhHHHHHHHHHHHHhhCCCc---CchHHHHHHHHhccCCcHHHHHHHHHHHHH
Q 015869          318 RDLYWEAVCGNSDGSKEKLEKAEELLLRCIEKNPFV---GEPHVVLGQIYLAKGEFEEAEREAGKGLML  383 (399)
Q Consensus       318 rdlYWeav~~~~~~~~~~~d~a~~lL~~~i~~NP~V---gEP~~vLAQ~~l~~gr~~eA~~~A~~gL~l  383 (399)
                      ..+|-.++.   --.....+.|.+.++++++.+|.-   -+-+.-||++|...|+|++|...-++.+++
T Consensus         5 ~~~~~~a~~---~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~   70 (225)
T 2yhc_A            5 NEIYATAQQ---KLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL   70 (225)
T ss_dssp             HHHHHHHHH---HHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHH---HHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence            445666554   223344889999999999987754   467899999999999999999998888764

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=92.04  E-value=0.24  Score=45.55  Aligned_cols=50  Identities=24%  Similarity=0.173  Sum_probs=45.1

Q ss_pred             hhHHHHHHHHHHHHhhCCCcCchHHHHHHHHhccCCcHHHHHHHHHHHHH
Q 015869          334 EKLEKAEELLLRCIEKNPFVGEPHVVLGQIYLAKGEFEEAEREAGKGLML  383 (399)
Q Consensus       334 ~~~d~a~~lL~~~i~~NP~VgEP~~vLAQ~~l~~gr~~eA~~~A~~gL~l  383 (399)
                      ...+.|.+.+.++++.||--...+.-+|++|...|+|++|...-+++|++
T Consensus       210 g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l  259 (336)
T 1p5q_A          210 QAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQL  259 (336)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence            44788999999999999999999999999999999999999998888876

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=91.99  E-value=0.047  Score=45.73  Aligned_cols=50  Identities=14%  Similarity=0.099  Sum_probs=43.4

Q ss_pred             hhHHHHHHHHHHHHhhCCCcCchHHHHHHHHhccCCcHHHHHHHHHHHHH
Q 015869          334 EKLEKAEELLLRCIEKNPFVGEPHVVLGQIYLAKGEFEEAEREAGKGLML  383 (399)
Q Consensus       334 ~~~d~a~~lL~~~i~~NP~VgEP~~vLAQ~~l~~gr~~eA~~~A~~gL~l  383 (399)
                      ...+.|.+.++++++.+|-..+.+..||.+|...|+|++|...-++++++
T Consensus        88 ~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~  137 (272)
T 3u4t_A           88 GQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRP  137 (272)
T ss_dssp             TCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCS
T ss_pred             ccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhc
Confidence            34788999999999999999999999999999999999998887776643

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=91.94  E-value=0.22  Score=44.62  Aligned_cols=47  Identities=26%  Similarity=0.246  Sum_probs=25.8

Q ss_pred             HHHHHHHHHHHHhhCCCcCchHHHHHHHHhccCCcHHHHHHHHHHHH
Q 015869          336 LEKAEELLLRCIEKNPFVGEPHVVLGQIYLAKGEFEEAEREAGKGLM  382 (399)
Q Consensus       336 ~d~a~~lL~~~i~~NP~VgEP~~vLAQ~~l~~gr~~eA~~~A~~gL~  382 (399)
                      .+.|.+.++++++.+|--.+.+..|+.+|...|++++|....+++++
T Consensus       287 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~  333 (388)
T 1w3b_A          287 VAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALE  333 (388)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            44555555555555555555555555555555555555555555443

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=91.91  E-value=0.11  Score=38.72  Aligned_cols=55  Identities=29%  Similarity=0.279  Sum_probs=44.0

Q ss_pred             hhHHHHHHHHHHHHhhC------CCcCchHHHHHHHHhccCCcHHHHHHHHHHHHHHHhhC
Q 015869          334 EKLEKAEELLLRCIEKN------PFVGEPHVVLGQIYLAKGEFEEAEREAGKGLMLLLEWG  388 (399)
Q Consensus       334 ~~~d~a~~lL~~~i~~N------P~VgEP~~vLAQ~~l~~gr~~eA~~~A~~gL~ll~~WG  388 (399)
                      ...+.|.+.++++++..      |....-+..||++|...|++++|....++++++.-+-|
T Consensus       103 ~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~  163 (164)
T 3ro3_A          103 QDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVG  163 (164)
T ss_dssp             TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTC-
T ss_pred             hhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhC
Confidence            34788999999988763      34445578899999999999999999999999875543

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=91.84  E-value=0.2  Score=48.51  Aligned_cols=72  Identities=14%  Similarity=0.112  Sum_probs=50.8

Q ss_pred             hhHHHHHHHHHHhhccCCCC------------CchhHHHHHHHHHHHHhhCCCcCchHHHHHHHHhccCCcHHHHHHHHH
Q 015869          312 KEQIEARDLYWEAVCGNSDG------------SKEKLEKAEELLLRCIEKNPFVGEPHVVLGQIYLAKGEFEEAEREAGK  379 (399)
Q Consensus       312 ~dq~aArdlYWeav~~~~~~------------~~~~~d~a~~lL~~~i~~NP~VgEP~~vLAQ~~l~~gr~~eA~~~A~~  379 (399)
                      ++-..|...|=+++.-+.+.            .....+.|.+.++++++.||--.+.+.-||++|...|++++|...-++
T Consensus        37 g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~  116 (568)
T 2vsy_A           37 GDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTR  116 (568)
T ss_dssp             TCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            34456666666666522221            112367788888888888888888888888888888888888888888


Q ss_pred             HHHH
Q 015869          380 GLML  383 (399)
Q Consensus       380 gL~l  383 (399)
                      ++++
T Consensus       117 al~~  120 (568)
T 2vsy_A          117 AHQL  120 (568)
T ss_dssp             HHHH
T ss_pred             HHHh
Confidence            7776

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=91.77  E-value=0.27  Score=44.32  Aligned_cols=49  Identities=20%  Similarity=0.070  Sum_probs=34.9

Q ss_pred             hHHHHHHHHHHHHhhCCCcCchHHHHHHHHhccCCcHHHHHHHHHHHHH
Q 015869          335 KLEKAEELLLRCIEKNPFVGEPHVVLGQIYLAKGEFEEAEREAGKGLML  383 (399)
Q Consensus       335 ~~d~a~~lL~~~i~~NP~VgEP~~vLAQ~~l~~gr~~eA~~~A~~gL~l  383 (399)
                      ..+.|..+++++++++|--..-+.-||.+|...|+|++|+..-+++|++
T Consensus       181 ~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~  229 (291)
T 3mkr_A          181 KLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDK  229 (291)
T ss_dssp             HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            3666777777777777766666666777777777777777777776653

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=91.69  E-value=0.14  Score=46.81  Aligned_cols=75  Identities=19%  Similarity=0.130  Sum_probs=45.2

Q ss_pred             hhHHHHHHHHHHhhccCCCCCch--hHHHHHHHHHHHHhhCCCcCchHHHHHHHHhccCCcHHHHHHHHHHHHHHHh
Q 015869          312 KEQIEARDLYWEAVCGNSDGSKE--KLEKAEELLLRCIEKNPFVGEPHVVLGQIYLAKGEFEEAEREAGKGLMLLLE  386 (399)
Q Consensus       312 ~dq~aArdlYWeav~~~~~~~~~--~~d~a~~lL~~~i~~NP~VgEP~~vLAQ~~l~~gr~~eA~~~A~~gL~ll~~  386 (399)
                      ++...|...|=+++.-+.+....  ..+.++.+++++++.||-..+-+..|+.+|...|++++|...-+++|++=-.
T Consensus       386 ~~~~~Ai~~y~kal~i~~~~~~~~~~~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~  462 (472)
T 4g1t_A          386 KCEDKAIHHFIEGVKINQKSREKEKMKDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSL  462 (472)
T ss_dssp             SCHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC---------------
T ss_pred             CCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Confidence            34456778888887622222111  1566888899999999999999999999999999999999999999986443

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=91.65  E-value=0.22  Score=41.26  Aligned_cols=47  Identities=11%  Similarity=0.051  Sum_probs=34.7

Q ss_pred             HHHHHHHHHHHHhhCCCcCchHHHHHHHHhccCCcHHHHHHHHHHHH
Q 015869          336 LEKAEELLLRCIEKNPFVGEPHVVLGQIYLAKGEFEEAEREAGKGLM  382 (399)
Q Consensus       336 ~d~a~~lL~~~i~~NP~VgEP~~vLAQ~~l~~gr~~eA~~~A~~gL~  382 (399)
                      .+.|.+.++++++.+|-..+-+..||++|...|++++|....+++++
T Consensus       157 ~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~  203 (252)
T 2ho1_A          157 PAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPARQYYDLFAQ  203 (252)
T ss_dssp             HHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            56677777777777777777777777777777777777777666654

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=91.62  E-value=0.19  Score=42.38  Aligned_cols=53  Identities=30%  Similarity=0.357  Sum_probs=47.7

Q ss_pred             hhHHHHHHHHHHHHhh--------CCCcCchHHHHHHHHhccCCcHHHHHHHHHHHHHHHh
Q 015869          334 EKLEKAEELLLRCIEK--------NPFVGEPHVVLGQIYLAKGEFEEAEREAGKGLMLLLE  386 (399)
Q Consensus       334 ~~~d~a~~lL~~~i~~--------NP~VgEP~~vLAQ~~l~~gr~~eA~~~A~~gL~ll~~  386 (399)
                      ...+.|.+.++++++.        +|....-+..||++|...|++++|....++++++.-+
T Consensus       167 ~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  227 (311)
T 3nf1_A          167 GKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHE  227 (311)
T ss_dssp             TCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence            3478899999999998        8999999999999999999999999999999987543

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=91.51  E-value=0.2  Score=49.00  Aligned_cols=51  Identities=22%  Similarity=0.152  Sum_probs=41.2

Q ss_pred             chhHHHHHHHHHHHHhhCCCcCchHHHHHHHHhccCCcHHHHHHHHHHHHH
Q 015869          333 KEKLEKAEELLLRCIEKNPFVGEPHVVLGQIYLAKGEFEEAEREAGKGLML  383 (399)
Q Consensus       333 ~~~~d~a~~lL~~~i~~NP~VgEP~~vLAQ~~l~~gr~~eA~~~A~~gL~l  383 (399)
                      ....++|.+.++++++.||-..+-+.-||++|...|+|++|....++++++
T Consensus        19 ~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l   69 (477)
T 1wao_1           19 AKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIEL   69 (477)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS
T ss_pred             hCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence            344778888888888888888888888888888888888888888887764

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=91.47  E-value=0.27  Score=44.39  Aligned_cols=48  Identities=19%  Similarity=0.150  Sum_probs=31.5

Q ss_pred             HHHHHHHHHHHHhhCCCcCchHHHHHHHHhccCCcHHHHHHHHHHHHH
Q 015869          336 LEKAEELLLRCIEKNPFVGEPHVVLGQIYLAKGEFEEAEREAGKGLML  383 (399)
Q Consensus       336 ~d~a~~lL~~~i~~NP~VgEP~~vLAQ~~l~~gr~~eA~~~A~~gL~l  383 (399)
                      .+.|..+++++++.+|-..+-+..+|.+|...|++++|....++++++
T Consensus        42 ~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~   89 (450)
T 2y4t_A           42 LADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQL   89 (450)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence            566666666666666666666666666666666666666666665553

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=91.40  E-value=0.27  Score=46.35  Aligned_cols=49  Identities=16%  Similarity=0.097  Sum_probs=45.9

Q ss_pred             hHHHHHHHHHHHHhhCCCcCchHHHHHHHHhccCCcHHHHHHHHHHHHH
Q 015869          335 KLEKAEELLLRCIEKNPFVGEPHVVLGQIYLAKGEFEEAEREAGKGLML  383 (399)
Q Consensus       335 ~~d~a~~lL~~~i~~NP~VgEP~~vLAQ~~l~~gr~~eA~~~A~~gL~l  383 (399)
                      ..+.|.+.++++++.+|-..+.+..|+.+|...|++++|....++++++
T Consensus       531 ~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~  579 (597)
T 2xpi_A          531 MYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAI  579 (597)
T ss_dssp             CHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence            3788999999999999998899999999999999999999999998876

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=91.33  E-value=0.33  Score=44.63  Aligned_cols=50  Identities=20%  Similarity=0.165  Sum_probs=46.2

Q ss_pred             hhHHHHHHHHHHHHhhCCCcC---------------chHHHHHHHHhccCCcHHHHHHHHHHHHH
Q 015869          334 EKLEKAEELLLRCIEKNPFVG---------------EPHVVLGQIYLAKGEFEEAEREAGKGLML  383 (399)
Q Consensus       334 ~~~d~a~~lL~~~i~~NP~Vg---------------EP~~vLAQ~~l~~gr~~eA~~~A~~gL~l  383 (399)
                      ...+.|.+.++++++.||-..               ..+.-||++|+..|+|++|.....++|++
T Consensus       161 g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~  225 (336)
T 1p5q_A          161 GKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALEL  225 (336)
T ss_dssp             TCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            448899999999999999984               88999999999999999999999999886

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=91.28  E-value=0.34  Score=47.26  Aligned_cols=79  Identities=24%  Similarity=0.326  Sum_probs=60.9

Q ss_pred             cccccccccccCChhhHHHHHHHHHHhhcc-----C-CCC--CchhHHHHHHHHHHHHhhCCC--cCchHHHHHHHHhc-
Q 015869          298 VPPVFENCTRILDAKEQIEARDLYWEAVCG-----N-SDG--SKEKLEKAEELLLRCIEKNPF--VGEPHVVLGQIYLA-  366 (399)
Q Consensus       298 iPPVF~~CT~vL~~~dq~aArdlYWeav~~-----~-~~~--~~~~~d~a~~lL~~~i~~NP~--VgEP~~vLAQ~~l~-  366 (399)
                      ++..+.+|.       ..-+-.|||.+|.-     . ..+  -......|+.+++++|+++|-  -|..|.+|+-+|.. 
T Consensus       140 ~~~~l~~~~-------~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~v  212 (301)
T 3u64_A          140 LHKVLSRCT-------RVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAA  212 (301)
T ss_dssp             HHHHHTTCC-------GGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHcC-------ccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhC
Confidence            455555554       33577899999842     1 111  122267899999999999999  68899999999999 


Q ss_pred             ----cCCcHHHHHHHHHHHHH
Q 015869          367 ----KGEFEEAEREAGKGLML  383 (399)
Q Consensus       367 ----~gr~~eA~~~A~~gL~l  383 (399)
                          -|..+.|+++=++||++
T Consensus       213 Pp~~gGd~ekA~~~ferAL~L  233 (301)
T 3u64_A          213 PESFGGGMEKAHTAFEHLTRY  233 (301)
T ss_dssp             CTTTTCCHHHHHHHHHHHHHH
T ss_pred             CCccCCCHHHHHHHHHHHHHh
Confidence                49999999999999986

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=91.24  E-value=0.32  Score=44.26  Aligned_cols=52  Identities=21%  Similarity=0.227  Sum_probs=47.6

Q ss_pred             chhHHHHHHHHHHHHhhCCCcCchHHHHHHHHhccCCcHHHHHHHHHHHHHH
Q 015869          333 KEKLEKAEELLLRCIEKNPFVGEPHVVLGQIYLAKGEFEEAEREAGKGLMLL  384 (399)
Q Consensus       333 ~~~~d~a~~lL~~~i~~NP~VgEP~~vLAQ~~l~~gr~~eA~~~A~~gL~ll  384 (399)
                      ....+.|.+.++++++.+|-..+.+..||++|...|++++|...-++++++-
T Consensus       428 ~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~  479 (514)
T 2gw1_A          428 VENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLA  479 (514)
T ss_dssp             TTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             cCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhc
Confidence            3458899999999999999999999999999999999999999999988863

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=91.24  E-value=0.3  Score=36.37  Aligned_cols=51  Identities=25%  Similarity=0.244  Sum_probs=30.2

Q ss_pred             HHHHHHHHHHHHhhCCCcCc------hHHHHHHHHhccCCcHHHHHHHHHHHHHHHh
Q 015869          336 LEKAEELLLRCIEKNPFVGE------PHVVLGQIYLAKGEFEEAEREAGKGLMLLLE  386 (399)
Q Consensus       336 ~d~a~~lL~~~i~~NP~VgE------P~~vLAQ~~l~~gr~~eA~~~A~~gL~ll~~  386 (399)
                      .+.|.+.++++++..|-.+.      -+..+|.+|...|+|++|....++++++.-.
T Consensus        25 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~   81 (164)
T 3ro3_A           25 FRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQ   81 (164)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence            55566666666665554443      3445666666666666666666666665544

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=91.15  E-value=0.33  Score=44.80  Aligned_cols=50  Identities=26%  Similarity=0.309  Sum_probs=46.6

Q ss_pred             hhHHHHHHHHHHHHhhCCCcCchHHHHHHHHhccCCcHHHHHHHHHHHHH
Q 015869          334 EKLEKAEELLLRCIEKNPFVGEPHVVLGQIYLAKGEFEEAEREAGKGLML  383 (399)
Q Consensus       334 ~~~d~a~~lL~~~i~~NP~VgEP~~vLAQ~~l~~gr~~eA~~~A~~gL~l  383 (399)
                      ...+.|.+.++++++.+|-..+-+.-||++|...|++++|...-++++++
T Consensus       442 ~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~  491 (537)
T 3fp2_A          442 EKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAIL  491 (537)
T ss_dssp             HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence            44789999999999999999999999999999999999999999988876

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=91.03  E-value=0.32  Score=39.47  Aligned_cols=50  Identities=20%  Similarity=0.137  Sum_probs=43.8

Q ss_pred             hhHHHHHHHHHHHHhhCCCcC----------------chHHHHHHHHhccCCcHHHHHHHHHHHHH
Q 015869          334 EKLEKAEELLLRCIEKNPFVG----------------EPHVVLGQIYLAKGEFEEAEREAGKGLML  383 (399)
Q Consensus       334 ~~~d~a~~lL~~~i~~NP~Vg----------------EP~~vLAQ~~l~~gr~~eA~~~A~~gL~l  383 (399)
                      ...+.|.+.++++++.+|-..                +.+.-||.+|...|++++|...-++++++
T Consensus        85 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~  150 (213)
T 1hh8_A           85 EKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM  150 (213)
T ss_dssp             TCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred             ccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHc
Confidence            347889999999999777655                89999999999999999999998888765

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=90.96  E-value=0.33  Score=45.93  Aligned_cols=65  Identities=14%  Similarity=0.100  Sum_probs=53.4

Q ss_pred             HHHHHHHHhhccCCCCCchhHHHHHHHHHHHHhhCCCcCchHHHHHHHHhccCCcHHHHHHHHHHHHH
Q 015869          316 EARDLYWEAVCGNSDGSKEKLEKAEELLLRCIEKNPFVGEPHVVLGQIYLAKGEFEEAEREAGKGLML  383 (399)
Q Consensus       316 aArdlYWeav~~~~~~~~~~~d~a~~lL~~~i~~NP~VgEP~~vLAQ~~l~~gr~~eA~~~A~~gL~l  383 (399)
                      -+.-++--+.|   -......+.|.+.++++++.+|--.+.+.-+|++|...|+|++|...-++++++
T Consensus       272 ~~~~~~nla~~---~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l  336 (370)
T 1ihg_A          272 ALSCVLNIGAC---KLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEI  336 (370)
T ss_dssp             HHHHHHHHHHH---HHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHH---HHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence            34445555555   223344889999999999999999999999999999999999999999999876

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=90.78  E-value=0.32  Score=47.12  Aligned_cols=74  Identities=12%  Similarity=-0.037  Sum_probs=58.3

Q ss_pred             hhhHHHHHHHHHHhhccCCCCC------------chhHHHHHHHHHHHHhhCCCcCchHHHHHHHHhcc---CCcHHHHH
Q 015869          311 AKEQIEARDLYWEAVCGNSDGS------------KEKLEKAEELLLRCIEKNPFVGEPHVVLGQIYLAK---GEFEEAER  375 (399)
Q Consensus       311 ~~dq~aArdlYWeav~~~~~~~------------~~~~d~a~~lL~~~i~~NP~VgEP~~vLAQ~~l~~---gr~~eA~~  375 (399)
                      .++-..|...|=+++.-+.+..            ....+.|.+.++++++.||--.+.+.-||++|...   |++++|..
T Consensus        70 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~  149 (568)
T 2vsy_A           70 QQRHAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSA  149 (568)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHH
T ss_pred             CCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHH
Confidence            3556677777777776322221            22368899999999999998889999999999999   99999999


Q ss_pred             HHHHHHHHH
Q 015869          376 EAGKGLMLL  384 (399)
Q Consensus       376 ~A~~gL~ll  384 (399)
                      ..++++++-
T Consensus       150 ~~~~al~~~  158 (568)
T 2vsy_A          150 QVRAAVAQG  158 (568)
T ss_dssp             HHHHHHHHT
T ss_pred             HHHHHHhcC
Confidence            988888764

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=90.73  E-value=0.37  Score=43.01  Aligned_cols=51  Identities=24%  Similarity=0.282  Sum_probs=47.3

Q ss_pred             hHHHHHHHHHHHHhhCCCc--CchHHHHHHHHhccCCcHHHHHHHHHHHHHHH
Q 015869          335 KLEKAEELLLRCIEKNPFV--GEPHVVLGQIYLAKGEFEEAEREAGKGLMLLL  385 (399)
Q Consensus       335 ~~d~a~~lL~~~i~~NP~V--gEP~~vLAQ~~l~~gr~~eA~~~A~~gL~ll~  385 (399)
                      ..+.|.+.+++++++||--  ++.+.-|+++|...|+.++|.....++|..++
T Consensus       234 ~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~a~~~~r~al~~~l  286 (287)
T 3qou_A          234 RNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDALASXYRRQLYALL  286 (287)
T ss_dssp             CHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCcHHHHHHHHHHHhh
Confidence            3788999999999999988  77899999999999999999999999998775

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=90.65  E-value=0.29  Score=51.35  Aligned_cols=51  Identities=8%  Similarity=0.096  Sum_probs=33.4

Q ss_pred             HHHHHHHHHHHHhhCCCcCchHHHHHHHHhccCCcHHHHHHHHHHHHHHHh
Q 015869          336 LEKAEELLLRCIEKNPFVGEPHVVLGQIYLAKGEFEEAEREAGKGLMLLLE  386 (399)
Q Consensus       336 ~d~a~~lL~~~i~~NP~VgEP~~vLAQ~~l~~gr~~eA~~~A~~gL~ll~~  386 (399)
                      .++|.+.+++++++||--.+.+.-|+++|...|+|++|++.-++++++.-.
T Consensus       127 ~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~A~~~~~kal~l~~~  177 (723)
T 4gyw_A          127 IPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIVAD  177 (723)
T ss_dssp             HHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHHHHHHHHHHHHhChh
Confidence            456666666666666666666666666666666666666666666666543

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=90.50  E-value=0.38  Score=39.92  Aligned_cols=50  Identities=10%  Similarity=-0.081  Sum_probs=44.8

Q ss_pred             hhHHHHHHHHHHHHhhCC-CcCchHHHHHHHHhccCCcHHHHHHHHHHHHH
Q 015869          334 EKLEKAEELLLRCIEKNP-FVGEPHVVLGQIYLAKGEFEEAEREAGKGLML  383 (399)
Q Consensus       334 ~~~d~a~~lL~~~i~~NP-~VgEP~~vLAQ~~l~~gr~~eA~~~A~~gL~l  383 (399)
                      ...+.|.+.+.++++.+| --...+.-+|.+|...|+|++|....++++++
T Consensus        21 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~   71 (228)
T 4i17_A           21 KNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKK   71 (228)
T ss_dssp             TCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred             cCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHh
Confidence            448899999999999998 66678888999999999999999999988864

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=90.43  E-value=0.66  Score=38.79  Aligned_cols=69  Identities=13%  Similarity=0.062  Sum_probs=44.0

Q ss_pred             HHHHHHHhhccCCCCCchhHHHHHHHHHHHHhhCCCc----CchHHHHHHHHhccCCcHHHHHHHHHHHHHHHhhC
Q 015869          317 ARDLYWEAVCGNSDGSKEKLEKAEELLLRCIEKNPFV----GEPHVVLGQIYLAKGEFEEAEREAGKGLMLLLEWG  388 (399)
Q Consensus       317 ArdlYWeav~~~~~~~~~~~d~a~~lL~~~i~~NP~V----gEP~~vLAQ~~l~~gr~~eA~~~A~~gL~ll~~WG  388 (399)
                      +-+++..+.+   -......+.|...++++++.+|--    +.-+..||.+|...|+|++|....++++++...-+
T Consensus         5 ~~~l~~~g~~---~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~   77 (338)
T 3ro2_A            5 CLELALEGER---LCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIG   77 (338)
T ss_dssp             HHHHHHHHHH---HHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHH---HHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccc
Confidence            3445555543   112233677888888888877653    23345677888888888888888777777654433

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=90.42  E-value=0.29  Score=44.20  Aligned_cols=49  Identities=14%  Similarity=0.078  Sum_probs=45.2

Q ss_pred             hHHHHHHHHHHHHhhCCCcCchHHHHHHHHhccCCcHHHHHHHHHHHHH
Q 015869          335 KLEKAEELLLRCIEKNPFVGEPHVVLGQIYLAKGEFEEAEREAGKGLML  383 (399)
Q Consensus       335 ~~d~a~~lL~~~i~~NP~VgEP~~vLAQ~~l~~gr~~eA~~~A~~gL~l  383 (399)
                      ..+.|.+.++++++.+|-..+-+..||.+|...|++++|....++++++
T Consensus       310 ~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~  358 (450)
T 2y4t_A          310 KPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEH  358 (450)
T ss_dssp             CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred             CHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence            4788999999999999998999999999999999999999999988764

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=90.41  E-value=0.19  Score=44.93  Aligned_cols=53  Identities=25%  Similarity=0.147  Sum_probs=37.3

Q ss_pred             HHHHHHHHHHHHhhCCCcCch-----HHHHHHHHhccCCcHHHHHHHHHHHHHHHhhC
Q 015869          336 LEKAEELLLRCIEKNPFVGEP-----HVVLGQIYLAKGEFEEAEREAGKGLMLLLEWG  388 (399)
Q Consensus       336 ~d~a~~lL~~~i~~NP~VgEP-----~~vLAQ~~l~~gr~~eA~~~A~~gL~ll~~WG  388 (399)
                      .+.|++.++++++..|-.|.|     +..||.+|...|++++|....++++++.-..+
T Consensus       151 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~  208 (373)
T 1hz4_A          151 LDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGK  208 (373)
T ss_dssp             HHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSC
T ss_pred             HHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccC
Confidence            567777777777777766654     34577777777888888777777777654443

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=90.06  E-value=0.41  Score=42.66  Aligned_cols=56  Identities=16%  Similarity=0.100  Sum_probs=49.1

Q ss_pred             hHHHHHHHHHHHHhhCCCcCch------HHHHHHHHhccCCcHHHHHHHHHHHHHHHhhCCC
Q 015869          335 KLEKAEELLLRCIEKNPFVGEP------HVVLGQIYLAKGEFEEAEREAGKGLMLLLEWGSP  390 (399)
Q Consensus       335 ~~d~a~~lL~~~i~~NP~VgEP------~~vLAQ~~l~~gr~~eA~~~A~~gL~ll~~WG~~  390 (399)
                      ..+.|++.++++++..|=.|.|      +..|+.+|...|+|++|....++++++.-+-|..
T Consensus        68 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~  129 (373)
T 1hz4_A           68 ELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLE  129 (373)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCT
T ss_pred             cHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccc
Confidence            4788999999999998888888      4568999999999999999999999988766543

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=89.77  E-value=0.34  Score=47.99  Aligned_cols=79  Identities=13%  Similarity=0.118  Sum_probs=61.9

Q ss_pred             ccccCChhhHHHHHHHHHHhhccCCCCCchhHHHHHHHHHHHHhh--------CCCcCchHHHHHHHHhccCCcHHHHHH
Q 015869          305 CTRILDAKEQIEARDLYWEAVCGNSDGSKEKLEKAEELLLRCIEK--------NPFVGEPHVVLGQIYLAKGEFEEAERE  376 (399)
Q Consensus       305 CT~vL~~~dq~aArdlYWeav~~~~~~~~~~~d~a~~lL~~~i~~--------NP~VgEP~~vLAQ~~l~~gr~~eA~~~  376 (399)
                      ..++|.+..--.|+-+.==+..   -.....+++|+++.+++++.        +|-||--..-||.+|.+.|+|+||+.-
T Consensus       328 ~~~~lg~~Hp~~a~~~~nLa~~---y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~  404 (433)
T 3qww_A          328 MSSVFEDSNVYMLHMMYQAMGV---CLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKA  404 (433)
T ss_dssp             HTTTBCTTSHHHHHHHHHHHHH---HHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             hhCccChhchHHHHHHHHHHHH---HHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHH
Confidence            3567777777777666544332   11234589999999999854        888999999999999999999999999


Q ss_pred             HHHHHHHHHh
Q 015869          377 AGKGLMLLLE  386 (399)
Q Consensus       377 A~~gL~ll~~  386 (399)
                      -+++|+.+..
T Consensus       405 ~~~Al~i~~~  414 (433)
T 3qww_A          405 LKKAIAIMEV  414 (433)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999998764

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=89.30  E-value=0.39  Score=46.32  Aligned_cols=64  Identities=20%  Similarity=0.118  Sum_probs=53.2

Q ss_pred             HHHHHHHhhccCCCCCchhHHHHHHHHHHHHhhCCCcCchHHHHHHHHhccCCcHHHHHHHHHHHHH
Q 015869          317 ARDLYWEAVCGNSDGSKEKLEKAEELLLRCIEKNPFVGEPHVVLGQIYLAKGEFEEAEREAGKGLML  383 (399)
Q Consensus       317 ArdlYWeav~~~~~~~~~~~d~a~~lL~~~i~~NP~VgEP~~vLAQ~~l~~gr~~eA~~~A~~gL~l  383 (399)
                      +.-+|.-+.|   -......+.|...+.++++.||---..+.-+|++|+..|+|++|...-.++|++
T Consensus       317 ~~~~~nla~~---~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l  380 (457)
T 1kt0_A          317 LAAFLNLAMC---YLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV  380 (457)
T ss_dssp             HHHHHHHHHH---HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHH---HHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence            4455556665   223445889999999999999999999999999999999999999999888865

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=89.29  E-value=0.32  Score=47.71  Aligned_cols=80  Identities=18%  Similarity=0.132  Sum_probs=61.8

Q ss_pred             cccccCChhhHHHHHHHHHHhhccCCCCCchhHHHHHHHHHHHHh--------hCCCcCchHHHHHHHHhccCCcHHHHH
Q 015869          304 NCTRILDAKEQIEARDLYWEAVCGNSDGSKEKLEKAEELLLRCIE--------KNPFVGEPHVVLGQIYLAKGEFEEAER  375 (399)
Q Consensus       304 ~CT~vL~~~dq~aArdlYWeav~~~~~~~~~~~d~a~~lL~~~i~--------~NP~VgEP~~vLAQ~~l~~gr~~eA~~  375 (399)
                      ...++|.+...-.|+-+.==+..   -.....+++|+++.+++++        .+|-||--..-||.+|.+.|+|+||+.
T Consensus       316 ~~~~~lg~~h~~~~~~~~~L~~~---y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~  392 (429)
T 3qwp_A          316 SNSERLPDINIYQLKVLDCAMDA---CINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMK  392 (429)
T ss_dssp             CSSCCCCTTSHHHHHHHHHHHHH---HHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             hccCcCCccchHHHHHHHHHHHH---HHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHH
Confidence            34577887777777665544332   1123458999999999884        478889999999999999999999999


Q ss_pred             HHHHHHHHHHh
Q 015869          376 EAGKGLMLLLE  386 (399)
Q Consensus       376 ~A~~gL~ll~~  386 (399)
                      --+++|+.+..
T Consensus       393 ~~~~Al~i~~~  403 (429)
T 3qwp_A          393 NLRLAFDIMRV  403 (429)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99999998764

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=89.13  E-value=0.24  Score=44.27  Aligned_cols=56  Identities=20%  Similarity=0.150  Sum_probs=49.8

Q ss_pred             hhHHHHHHHHHHHHhh------CCCcCchHHHHHHHHhccCCcHHHHHHHHHHHHHHHhhCC
Q 015869          334 EKLEKAEELLLRCIEK------NPFVGEPHVVLGQIYLAKGEFEEAEREAGKGLMLLLEWGS  389 (399)
Q Consensus       334 ~~~d~a~~lL~~~i~~------NP~VgEP~~vLAQ~~l~~gr~~eA~~~A~~gL~ll~~WG~  389 (399)
                      ...+.|.+.++++++.      +|....-+..||++|...|+|++|....++++++.-.-+.
T Consensus       100 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~  161 (411)
T 4a1s_A          100 GDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGD  161 (411)
T ss_dssp             TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC
T ss_pred             CCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhc
Confidence            3478899999999998      7888899999999999999999999999999998766553

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=89.13  E-value=0.69  Score=42.11  Aligned_cols=55  Identities=20%  Similarity=0.250  Sum_probs=49.4

Q ss_pred             hhHHHHHHHHHHHHhhCCCcCchHHHHHHHHhccCCcHHHHHHHHHHHHHHHhhC
Q 015869          334 EKLEKAEELLLRCIEKNPFVGEPHVVLGQIYLAKGEFEEAEREAGKGLMLLLEWG  388 (399)
Q Consensus       334 ~~~d~a~~lL~~~i~~NP~VgEP~~vLAQ~~l~~gr~~eA~~~A~~gL~ll~~WG  388 (399)
                      ...+.|...+.++++.+|-..+.+..+|.+|...|++++|....++++++.-...
T Consensus       352 ~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~  406 (514)
T 2gw1_A          352 NKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLD  406 (514)
T ss_dssp             TCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSS
T ss_pred             CCHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccc
Confidence            4488999999999999999999999999999999999999999999988765543

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=88.80  E-value=0.57  Score=42.31  Aligned_cols=56  Identities=21%  Similarity=0.288  Sum_probs=49.7

Q ss_pred             hhHHHHHHHHHHHHh-----hC-CCcCchHHHHHHHHhccCCcHHHHHHHHHHHHHHHhhCC
Q 015869          334 EKLEKAEELLLRCIE-----KN-PFVGEPHVVLGQIYLAKGEFEEAEREAGKGLMLLLEWGS  389 (399)
Q Consensus       334 ~~~d~a~~lL~~~i~-----~N-P~VgEP~~vLAQ~~l~~gr~~eA~~~A~~gL~ll~~WG~  389 (399)
                      ...++|.+.++++++     .+ |....-...||.+|...|++++|....++++++.-.-|.
T Consensus       238 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~  299 (383)
T 3ulq_A          238 SQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGD  299 (383)
T ss_dssp             TCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC
T ss_pred             CCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCC
Confidence            448899999999999     67 888888999999999999999999999999998766554

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=88.64  E-value=1.2  Score=37.62  Aligned_cols=50  Identities=10%  Similarity=0.067  Sum_probs=40.9

Q ss_pred             hhHHHHHHHHHHHHhhCCCcCch-----------------HHHHHHHHhccCCcHHHHHHHHHHHHH
Q 015869          334 EKLEKAEELLLRCIEKNPFVGEP-----------------HVVLGQIYLAKGEFEEAEREAGKGLML  383 (399)
Q Consensus       334 ~~~d~a~~lL~~~i~~NP~VgEP-----------------~~vLAQ~~l~~gr~~eA~~~A~~gL~l  383 (399)
                      ...++|...++++|+++|---..                 ++.+|++|...|+|++|...-++.++.
T Consensus       110 ~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~  176 (225)
T 2yhc_A          110 QQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRD  176 (225)
T ss_dssp             HHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHH
Confidence            44788888999999888865443                 367899999999999999998888765

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=88.61  E-value=0.3  Score=40.87  Aligned_cols=55  Identities=20%  Similarity=0.093  Sum_probs=47.4

Q ss_pred             hHHHHHHHHHHHHhh------CCCcCchHHHHHHHHhccCCcHHHHHHHHHHHHHHHhhCC
Q 015869          335 KLEKAEELLLRCIEK------NPFVGEPHVVLGQIYLAKGEFEEAEREAGKGLMLLLEWGS  389 (399)
Q Consensus       335 ~~d~a~~lL~~~i~~------NP~VgEP~~vLAQ~~l~~gr~~eA~~~A~~gL~ll~~WG~  389 (399)
                      ..+.|.+.++++++.      +|....-+..||++|...|+|++|....++++++.-.-+.
T Consensus        58 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~  118 (338)
T 3ro2_A           58 DYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELND  118 (338)
T ss_dssp             CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred             CHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcC
Confidence            478899999998887      6667777889999999999999999999999998876554

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=88.56  E-value=0.47  Score=45.75  Aligned_cols=46  Identities=15%  Similarity=0.089  Sum_probs=41.8

Q ss_pred             hHHHHHHHHHHHHhhCC--CcCchHHHHHHHHhccCCcHHHHHHHHHH
Q 015869          335 KLEKAEELLLRCIEKNP--FVGEPHVVLGQIYLAKGEFEEAEREAGKG  380 (399)
Q Consensus       335 ~~d~a~~lL~~~i~~NP--~VgEP~~vLAQ~~l~~gr~~eA~~~A~~g  380 (399)
                      ..+.|.++|.+.|..||  -.=|+.++++|+|+.+||.+.|++..++.
T Consensus       115 ~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~  162 (310)
T 3mv2_B          115 DLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNY  162 (310)
T ss_dssp             CHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            37889999999999998  78899999999999999999999988654

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=88.55  E-value=0.89  Score=41.92  Aligned_cols=67  Identities=16%  Similarity=-0.042  Sum_probs=53.5

Q ss_pred             HHHHHHHHHHhhccCCCCCchhHHHHHHHHHHHHhhCCCcC-----------------chHHHHHHHHhccCCcHHHHHH
Q 015869          314 QIEARDLYWEAVCGNSDGSKEKLEKAEELLLRCIEKNPFVG-----------------EPHVVLGQIYLAKGEFEEAERE  376 (399)
Q Consensus       314 q~aArdlYWeav~~~~~~~~~~~d~a~~lL~~~i~~NP~Vg-----------------EP~~vLAQ~~l~~gr~~eA~~~  376 (399)
                      ...|..++-.+.+   -......+.|...++++++.+|--.                 .-+.-||++|+..|+|++|...
T Consensus       176 ~~~a~~~~~~g~~---~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~  252 (338)
T 2if4_A          176 IGAADRRKMDGNS---LFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGH  252 (338)
T ss_dssp             HHHHHHHHHHHHH---TCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHH
T ss_pred             HHHHHHHHHHHHH---HHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence            3456666666655   3344558899999999999998644                 3678899999999999999999


Q ss_pred             HHHHHHH
Q 015869          377 AGKGLML  383 (399)
Q Consensus       377 A~~gL~l  383 (399)
                      ..++|++
T Consensus       253 ~~~al~~  259 (338)
T 2if4_A          253 CNIVLTE  259 (338)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHh
Confidence            9999876

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=88.41  E-value=0.46  Score=42.44  Aligned_cols=56  Identities=23%  Similarity=0.294  Sum_probs=42.8

Q ss_pred             hHHHHHHHHHHHHhhCCCcCc------hHHHHHHHHhccCCcHHHHHHHHHHHHHHHhhCCC
Q 015869          335 KLEKAEELLLRCIEKNPFVGE------PHVVLGQIYLAKGEFEEAEREAGKGLMLLLEWGSP  390 (399)
Q Consensus       335 ~~d~a~~lL~~~i~~NP~VgE------P~~vLAQ~~l~~gr~~eA~~~A~~gL~ll~~WG~~  390 (399)
                      ..+.|.+.++++++.+|-.+.      -+..||.+|...|++++|....++++++.-.-|..
T Consensus       238 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  299 (411)
T 4a1s_A          238 DFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGER  299 (411)
T ss_dssp             CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred             ChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCH
Confidence            367788888888887776666      66778888888888888888888888877665543

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=88.30  E-value=0.36  Score=44.59  Aligned_cols=53  Identities=9%  Similarity=0.032  Sum_probs=46.4

Q ss_pred             CchhHHHHHHHHHHHHhhCCCcCchHHHHHHHHhccCCcHHHHHHHHHHHHHH
Q 015869          332 SKEKLEKAEELLLRCIEKNPFVGEPHVVLGQIYLAKGEFEEAEREAGKGLMLL  384 (399)
Q Consensus       332 ~~~~~d~a~~lL~~~i~~NP~VgEP~~vLAQ~~l~~gr~~eA~~~A~~gL~ll  384 (399)
                      .....+.|...+.++++.+|--...+.-+|++|...|+|++|...-++++++-
T Consensus       242 ~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~  294 (338)
T 2if4_A          242 KLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYA  294 (338)
T ss_dssp             TTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--
T ss_pred             HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence            33447899999999999999999999999999999999999999998887653

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=88.16  E-value=0.44  Score=48.51  Aligned_cols=48  Identities=17%  Similarity=0.062  Sum_probs=45.2

Q ss_pred             HHHHHHHHHHHHhhCCCcCchHHHHHHHHhccCCcHHHHHHHHHHHHH
Q 015869          336 LEKAEELLLRCIEKNPFVGEPHVVLGQIYLAKGEFEEAEREAGKGLML  383 (399)
Q Consensus       336 ~d~a~~lL~~~i~~NP~VgEP~~vLAQ~~l~~gr~~eA~~~A~~gL~l  383 (399)
                      .+.|.+.++++++.||--.+.+..+|.+|+..|+|++|...-+++|++
T Consensus       449 ~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l  496 (681)
T 2pzi_A          449 VAKATRKLDDLAERVGWRWRLVWYRAVAELLTGDYDSATKHFTEVLDT  496 (681)
T ss_dssp             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhccCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            678999999999999999999999999999999999999999999876

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=88.12  E-value=0.62  Score=46.37  Aligned_cols=48  Identities=23%  Similarity=0.192  Sum_probs=42.4

Q ss_pred             hHHHHHHHHHHHHhhCCCcCchHHHHHHHHhccCCcHHHHHHHHHHHHH
Q 015869          335 KLEKAEELLLRCIEKNPFVGEPHVVLGQIYLAKGEFEEAEREAGKGLML  383 (399)
Q Consensus       335 ~~d~a~~lL~~~i~~NP~VgEP~~vLAQ~~l~~gr~~eA~~~A~~gL~l  383 (399)
                      ..+.|...+++++++||-+ --+++|+.+|.-.|++++|.++.++|++|
T Consensus       292 d~d~A~~~l~rAl~Ln~s~-~a~~llG~~~~~~G~~~eA~e~~~~AlrL  339 (372)
T 3ly7_A          292 KTDESYQAINTGIDLEMSW-LNYVLLGKVYEMKGMNREAADAYLTAFNL  339 (372)
T ss_dssp             CHHHHHHHHHHHHHHCCCH-HHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence            4788999999999999974 34578899999999999999999999987

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=88.08  E-value=0.72  Score=40.39  Aligned_cols=70  Identities=13%  Similarity=0.062  Sum_probs=48.4

Q ss_pred             HHHHHHHHhhccCCCCCchhHHHHHHHHHHHHhhCCCc----CchHHHHHHHHhccCCcHHHHHHHHHHHHHHHhhC
Q 015869          316 EARDLYWEAVCGNSDGSKEKLEKAEELLLRCIEKNPFV----GEPHVVLGQIYLAKGEFEEAEREAGKGLMLLLEWG  388 (399)
Q Consensus       316 aArdlYWeav~~~~~~~~~~~d~a~~lL~~~i~~NP~V----gEP~~vLAQ~~l~~gr~~eA~~~A~~gL~ll~~WG  388 (399)
                      .+..++..+.+   -......+.|...++++++.+|--    .+-+..||.+|...|+|++|....++++++.-.-+
T Consensus         8 ~~~~l~~~g~~---~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~   81 (406)
T 3sf4_A            8 SCLELALEGER---LCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIG   81 (406)
T ss_dssp             CHHHHHHHHHH---HHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHH---HHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcc
Confidence            34455555554   112334778888888888888753    23456788888888888888888888887755433

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=87.92  E-value=0.69  Score=45.14  Aligned_cols=49  Identities=10%  Similarity=0.077  Sum_probs=44.2

Q ss_pred             hHHHHHHHHHHHHhhCCC-cCchHHHHHHHHhc-cCCcHHHHHHHHHHHHH
Q 015869          335 KLEKAEELLLRCIEKNPF-VGEPHVVLGQIYLA-KGEFEEAEREAGKGLML  383 (399)
Q Consensus       335 ~~d~a~~lL~~~i~~NP~-VgEP~~vLAQ~~l~-~gr~~eA~~~A~~gL~l  383 (399)
                      +.++|++++++++++||= --.|++-.|+.|+. .|++++|.+.-+++|++
T Consensus       219 d~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a  269 (301)
T 3u64_A          219 GMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAI  269 (301)
T ss_dssp             CHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHC
T ss_pred             CHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcC
Confidence            378999999999999994 58999999999999 59999999999998863

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=87.73  E-value=0.45  Score=43.19  Aligned_cols=56  Identities=13%  Similarity=0.030  Sum_probs=49.8

Q ss_pred             hhHHHHHHHHHHHHh-----hCCCcCchHHHHHHHHhccCCcHHHHHHHHHHHHHHHhhCC
Q 015869          334 EKLEKAEELLLRCIE-----KNPFVGEPHVVLGQIYLAKGEFEEAEREAGKGLMLLLEWGS  389 (399)
Q Consensus       334 ~~~d~a~~lL~~~i~-----~NP~VgEP~~vLAQ~~l~~gr~~eA~~~A~~gL~ll~~WG~  389 (399)
                      ...++|.+.+.++++     .+|........||.+|...|++++|....++++++.-.-|+
T Consensus       236 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  296 (378)
T 3q15_A          236 GDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSH  296 (378)
T ss_dssp             TCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCC
T ss_pred             CCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCC
Confidence            347899999999999     89999888999999999999999999999999998655444

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=87.08  E-value=0.55  Score=46.44  Aligned_cols=52  Identities=15%  Similarity=0.002  Sum_probs=44.3

Q ss_pred             hHHHHHHHHHHHHhh--------CCCcCchHHHHHHHHhccCCcHHHHHHHHHHHHHHHh
Q 015869          335 KLEKAEELLLRCIEK--------NPFVGEPHVVLGQIYLAKGEFEEAEREAGKGLMLLLE  386 (399)
Q Consensus       335 ~~d~a~~lL~~~i~~--------NP~VgEP~~vLAQ~~l~~gr~~eA~~~A~~gL~ll~~  386 (399)
                      ..+.|+++++++++.        ||.|..-.--||++|.+.|+|++|+...+++|.....
T Consensus       313 ~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~  372 (433)
T 3qww_A          313 SPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSK  372 (433)
T ss_dssp             CHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHH
Confidence            368899999999875        6777777777999999999999999999999987653

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=86.77  E-value=1.2  Score=40.77  Aligned_cols=47  Identities=21%  Similarity=0.140  Sum_probs=42.7

Q ss_pred             HHHHHHHHHHHHhhCCCcCchHHHHHHHHhccCCcHHHHHHHHHHHH
Q 015869          336 LEKAEELLLRCIEKNPFVGEPHVVLGQIYLAKGEFEEAEREAGKGLM  382 (399)
Q Consensus       336 ~d~a~~lL~~~i~~NP~VgEP~~vLAQ~~l~~gr~~eA~~~A~~gL~  382 (399)
                      .+.|...++++++.||-..+.+..||.+|...|+|++|+..-+++|+
T Consensus       316 ~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~  362 (472)
T 4g1t_A          316 IGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFS  362 (472)
T ss_dssp             HHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccHHHHHHHHHHHHh
Confidence            56788899999999999999999999999999999999988888775

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=86.13  E-value=0.82  Score=40.03  Aligned_cols=52  Identities=25%  Similarity=0.235  Sum_probs=29.9

Q ss_pred             HHHHHHHHHHHHhhCCCcCc------hHHHHHHHHhccCCcHHHHHHHHHHHHHHHhh
Q 015869          336 LEKAEELLLRCIEKNPFVGE------PHVVLGQIYLAKGEFEEAEREAGKGLMLLLEW  387 (399)
Q Consensus       336 ~d~a~~lL~~~i~~NP~VgE------P~~vLAQ~~l~~gr~~eA~~~A~~gL~ll~~W  387 (399)
                      .+.|.+.++++++..|=.+.      -+..||.+|...|++++|.....+++++.-.-
T Consensus       203 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  260 (406)
T 3sf4_A          203 FRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQL  260 (406)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhC
Confidence            55566666666655544444      44555666666666666666666666555443

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=86.11  E-value=0.57  Score=47.07  Aligned_cols=81  Identities=17%  Similarity=0.135  Sum_probs=61.3

Q ss_pred             ccccccCChhhHHHHHHHHHHhhccCCCCCchhHHHHHHHHHHHHh--------hCCCcCchHHHHHHHHhccCCcHHHH
Q 015869          303 ENCTRILDAKEQIEARDLYWEAVCGNSDGSKEKLEKAEELLLRCIE--------KNPFVGEPHVVLGQIYLAKGEFEEAE  374 (399)
Q Consensus       303 ~~CT~vL~~~dq~aArdlYWeav~~~~~~~~~~~d~a~~lL~~~i~--------~NP~VgEP~~vLAQ~~l~~gr~~eA~  374 (399)
                      +...++|.+..-..|+.+.==+..   -.....++.|+.+.+++++        .+|-|+--..=||.+|.+.|+|+||+
T Consensus       337 ~~~~~~lg~~Hp~~a~~~~nLa~~---y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~  413 (490)
T 3n71_A          337 EKQEPVFADTNLYVLRLLSIASEV---LSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGH  413 (490)
T ss_dssp             HHHTTTBCTTSHHHHHHHHHHHHH---HHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHhcCCCCHHHHHHHHHHHHH---HHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHH
Confidence            445677777776666665544432   1122448899999999885        37888888899999999999999999


Q ss_pred             HHHHHHHHHHHh
Q 015869          375 REAGKGLMLLLE  386 (399)
Q Consensus       375 ~~A~~gL~ll~~  386 (399)
                      ..-+++|+.+..
T Consensus       414 ~~~~~Al~i~~~  425 (490)
T 3n71_A          414 GMICKAYAILLV  425 (490)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            999999988754

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=85.72  E-value=0.79  Score=43.90  Aligned_cols=47  Identities=11%  Similarity=-0.093  Sum_probs=24.3

Q ss_pred             HHHHHHHHHHHHhhCCCcCchHHHHHHHHhccCCcHHHHHHHHHHHH
Q 015869          336 LEKAEELLLRCIEKNPFVGEPHVVLGQIYLAKGEFEEAEREAGKGLM  382 (399)
Q Consensus       336 ~d~a~~lL~~~i~~NP~VgEP~~vLAQ~~l~~gr~~eA~~~A~~gL~  382 (399)
                      .+.|.+.++++|++||--.+-+.-++.+|...|+|++|...-.++|+
T Consensus       148 ~~eAl~~~~~al~l~P~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~  194 (382)
T 2h6f_A          148 LHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILN  194 (382)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence            44455555555555555555555555555555555555555544444

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=85.68  E-value=1  Score=43.40  Aligned_cols=65  Identities=17%  Similarity=0.011  Sum_probs=51.8

Q ss_pred             HHHHHHHHhhccCCCCCchhHHHHHHHHHHHHhhCCCc---------------CchHHHHHHHHhccCCcHHHHHHHHHH
Q 015869          316 EARDLYWEAVCGNSDGSKEKLEKAEELLLRCIEKNPFV---------------GEPHVVLGQIYLAKGEFEEAEREAGKG  380 (399)
Q Consensus       316 aArdlYWeav~~~~~~~~~~~d~a~~lL~~~i~~NP~V---------------gEP~~vLAQ~~l~~gr~~eA~~~A~~g  380 (399)
                      .|..++-.+.+   -......+.|...+.++++.||-.               ..-+.-||++|+..|+|++|.....++
T Consensus       267 ~a~~~~~~G~~---~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~a  343 (457)
T 1kt0_A          267 QAAIVKEKGTV---YFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKA  343 (457)
T ss_dssp             HHHHHHHHHHH---HHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHH---HHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence            34455555543   123344889999999999999988               477889999999999999999999999


Q ss_pred             HHH
Q 015869          381 LML  383 (399)
Q Consensus       381 L~l  383 (399)
                      |++
T Consensus       344 l~~  346 (457)
T 1kt0_A          344 LGL  346 (457)
T ss_dssp             HHH
T ss_pred             Hhc
Confidence            886

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=85.61  E-value=1.1  Score=43.00  Aligned_cols=49  Identities=14%  Similarity=-0.053  Sum_probs=46.0

Q ss_pred             hHHHHHHHHHHHHhhCCCcCchHHHHHHHHhccCC-cHHHHHHHHHHHHH
Q 015869          335 KLEKAEELLLRCIEKNPFVGEPHVVLGQIYLAKGE-FEEAEREAGKGLML  383 (399)
Q Consensus       335 ~~d~a~~lL~~~i~~NP~VgEP~~vLAQ~~l~~gr-~~eA~~~A~~gL~l  383 (399)
                      ..+.|.+.++++|++||=-.+-+.-++.+|...|+ |++|....+++|++
T Consensus       112 ~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l  161 (382)
T 2h6f_A          112 RSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEE  161 (382)
T ss_dssp             CCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred             ChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHH
Confidence            37889999999999999999999999999999998 99999999999875

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=85.52  E-value=2  Score=38.09  Aligned_cols=48  Identities=10%  Similarity=-0.109  Sum_probs=41.2

Q ss_pred             hHHHHHHHHHHHHhhCCCcCchHHHHHHHHhccCCcHHHHHHHHHHHH
Q 015869          335 KLEKAEELLLRCIEKNPFVGEPHVVLGQIYLAKGEFEEAEREAGKGLM  382 (399)
Q Consensus       335 ~~d~a~~lL~~~i~~NP~VgEP~~vLAQ~~l~~gr~~eA~~~A~~gL~  382 (399)
                      ..+.|.++++++++++|--.+-++-+++++...|++++|...-+++++
T Consensus       184 ~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~  231 (308)
T 2ond_A          184 DKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLT  231 (308)
T ss_dssp             CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence            367888999999999998888888888999999999999888888876

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=85.24  E-value=0.7  Score=34.62  Aligned_cols=36  Identities=14%  Similarity=-0.103  Sum_probs=30.3

Q ss_pred             hCCCcCchHHHHHHHHhccCCcHHHHHHHHHHHHHH
Q 015869          349 KNPFVGEPHVVLGQIYLAKGEFEEAEREAGKGLMLL  384 (399)
Q Consensus       349 ~NP~VgEP~~vLAQ~~l~~gr~~eA~~~A~~gL~ll  384 (399)
                      +||--.+.+..||.+|...|+|++|...-++++++-
T Consensus         2 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~   37 (100)
T 3ma5_A            2 EDPEDPFTRYALAQEHLKHDNASRALALFEELVETD   37 (100)
T ss_dssp             ---CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred             CCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence            577778889999999999999999999999998863

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=84.66  E-value=0.55  Score=44.44  Aligned_cols=64  Identities=14%  Similarity=0.070  Sum_probs=50.4

Q ss_pred             HHHHHHHhhccCCCCCchhHHHHHHHHHHHHh----------------hCCCcCchHHHHHHHHhccCCcHHHHHHHHHH
Q 015869          317 ARDLYWEAVCGNSDGSKEKLEKAEELLLRCIE----------------KNPFVGEPHVVLGQIYLAKGEFEEAEREAGKG  380 (399)
Q Consensus       317 ArdlYWeav~~~~~~~~~~~d~a~~lL~~~i~----------------~NP~VgEP~~vLAQ~~l~~gr~~eA~~~A~~g  380 (399)
                      |..++-.+..   -......+.|.+.++++++                .+|....-+.-||++|+..|+|++|....+++
T Consensus       223 a~~~~~~g~~---~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~a  299 (370)
T 1ihg_A          223 SEDLKNIGNT---FFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEA  299 (370)
T ss_dssp             HHHHHHHHHH---HHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHH---HHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence            4444544443   1123348889999999998                77888888899999999999999999999999


Q ss_pred             HHH
Q 015869          381 LML  383 (399)
Q Consensus       381 L~l  383 (399)
                      |++
T Consensus       300 l~~  302 (370)
T 1ihg_A          300 LEI  302 (370)
T ss_dssp             HTT
T ss_pred             HHh
Confidence            875

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=84.53  E-value=0.94  Score=39.86  Aligned_cols=48  Identities=15%  Similarity=0.154  Sum_probs=43.2

Q ss_pred             HHHHHHHHHHHHhhCCCcCchHHHHHHHHhccC-----------CcHHHHHHHHHHHHH
Q 015869          336 LEKAEELLLRCIEKNPFVGEPHVVLGQIYLAKG-----------EFEEAEREAGKGLML  383 (399)
Q Consensus       336 ~d~a~~lL~~~i~~NP~VgEP~~vLAQ~~l~~g-----------r~~eA~~~A~~gL~l  383 (399)
                      .+.|...+++||+.||=-.+-+.-|+.+|.+.|           +|++|...=.++|++
T Consensus        62 ~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l  120 (158)
T 1zu2_A           62 IQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDE  120 (158)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHh
Confidence            468999999999999999999999999999875           899999988888875

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=84.24  E-value=1.2  Score=45.20  Aligned_cols=49  Identities=12%  Similarity=-0.049  Sum_probs=45.1

Q ss_pred             hHHHHHHHHHHHH--------hhCCCcCchHHHHHHHHhccCCcHHHHHHHHHHHHH
Q 015869          335 KLEKAEELLLRCI--------EKNPFVGEPHVVLGQIYLAKGEFEEAEREAGKGLML  383 (399)
Q Consensus       335 ~~d~a~~lL~~~i--------~~NP~VgEP~~vLAQ~~l~~gr~~eA~~~A~~gL~l  383 (399)
                      ..+.|.+.+++++        +.||--.+.++.+|.+|+..|+|++|....++++++
T Consensus       406 ~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~  462 (681)
T 2pzi_A          406 QPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAER  462 (681)
T ss_dssp             CHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhcc
Confidence            3788999999999        999999999999999999999999999999999876

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=84.00  E-value=1.5  Score=41.19  Aligned_cols=49  Identities=18%  Similarity=0.156  Sum_probs=35.1

Q ss_pred             HHHHHHHHHHHHhhCCCcCchHHHHHHHHhccCCcHHHHHHHHHHHHHH
Q 015869          336 LEKAEELLLRCIEKNPFVGEPHVVLGQIYLAKGEFEEAEREAGKGLMLL  384 (399)
Q Consensus       336 ~d~a~~lL~~~i~~NP~VgEP~~vLAQ~~l~~gr~~eA~~~A~~gL~ll  384 (399)
                      .+.|.++++++++.+|-..+-+..|+.+|...|++++|...-++++++.
T Consensus       457 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  505 (597)
T 2xpi_A          457 ILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLV  505 (597)
T ss_dssp             HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhh
Confidence            5667777777777777666667777777777777777777777776653

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=83.83  E-value=1.4  Score=39.05  Aligned_cols=77  Identities=17%  Similarity=0.172  Sum_probs=57.3

Q ss_pred             hhhHHHHHHHHHHhhccCCCCCchhHHHHHHHHHHHHhhCCCcCchH------HHHHHHHhccCCcHHHHHHHHHHHHHH
Q 015869          311 AKEQIEARDLYWEAVCGNSDGSKEKLEKAEELLLRCIEKNPFVGEPH------VVLGQIYLAKGEFEEAEREAGKGLMLL  384 (399)
Q Consensus       311 ~~dq~aArdlYWeav~~~~~~~~~~~d~a~~lL~~~i~~NP~VgEP~------~vLAQ~~l~~gr~~eA~~~A~~gL~ll  384 (399)
                      +.+-..|.+.|=++..  .-......+.|.+.++++++.+|=.|.|.      .-|+.+|...|+|++|...-++++++.
T Consensus        30 ~~~~~~A~~~~~~a~~--~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~  107 (292)
T 1qqe_A           30 SYKFEEAADLCVQAAT--IYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIF  107 (292)
T ss_dssp             HHHHHHHHHHHHHHHH--HHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             CccHHHHHHHHHHHHH--HHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence            4445666777776642  11122337889999999999877666654      458999999999999999999999988


Q ss_pred             HhhCC
Q 015869          385 LEWGS  389 (399)
Q Consensus       385 ~~WG~  389 (399)
                      .+-|.
T Consensus       108 ~~~g~  112 (292)
T 1qqe_A          108 THRGQ  112 (292)
T ss_dssp             HHTTC
T ss_pred             HHcCC
Confidence            66553

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=83.56  E-value=1  Score=45.21  Aligned_cols=51  Identities=20%  Similarity=0.210  Sum_probs=43.7

Q ss_pred             hHHHHHHHHHHHHhh--------CCCcCchHHHHHHHHhccCCcHHHHHHHHHHHHHHH
Q 015869          335 KLEKAEELLLRCIEK--------NPFVGEPHVVLGQIYLAKGEFEEAEREAGKGLMLLL  385 (399)
Q Consensus       335 ~~d~a~~lL~~~i~~--------NP~VgEP~~vLAQ~~l~~gr~~eA~~~A~~gL~ll~  385 (399)
                      ..+.|+++++++++.        ||.|..-.--||.+|...|+|++|+...+++|+...
T Consensus       324 ~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~  382 (490)
T 3n71_A          324 LYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYM  382 (490)
T ss_dssp             CHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence            478899999999875        666777777799999999999999999999998754

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=83.54  E-value=0.86  Score=44.72  Aligned_cols=52  Identities=15%  Similarity=-0.005  Sum_probs=43.5

Q ss_pred             hHHHHHHHHHHHHhh--------CCCcCchHHHHHHHHhccCCcHHHHHHHHHHHHHHHh
Q 015869          335 KLEKAEELLLRCIEK--------NPFVGEPHVVLGQIYLAKGEFEEAEREAGKGLMLLLE  386 (399)
Q Consensus       335 ~~d~a~~lL~~~i~~--------NP~VgEP~~vLAQ~~l~~gr~~eA~~~A~~gL~ll~~  386 (399)
                      ..+.|+++.++++++        ||.+..-.--||++|.+.|+|++|+...+++|+....
T Consensus       302 ~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~  361 (429)
T 3qwp_A          302 KWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRI  361 (429)
T ss_dssp             CHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHH
Confidence            368899999999975        6666666667899999999999999999999987653

>1vj7_A Bifunctional RELA/SPOT; HD domain, alpha beta 2-layer sandwich, helix bundle, mangan PPG2':3'P, (P)PPGPP, PPGPP; HET: GDP GPX; 2.10A {Streptococcus dysgalactiae subsp} SCOP: a.211.1.1 d.218.1.8

Probab=81.91  E-value=3.5  Score=41.27  Aligned_cols=102  Identities=13%  Similarity=0.158  Sum_probs=70.6

Q ss_pred             chHHHHHHhcccchhhhHhhcCCCchhHHHHHHHhCCCccccCCCChHhhHHHHHHHHHhcCCchHHHHhccchhcccCc
Q 015869           11 DYLETLVASARPFLRGELEAIDKNLPSLIAVLRSVGAGECWHKHGSFLEHLVDIYRILKIWKAPDCVCLCGLFHSAYSNS   90 (399)
Q Consensus        11 ~~~~~l~~~arpfLr~e~~~~D~~Lp~ll~~Lr~~GAge~~Hk~GTf~~HL~~V~~iL~~Wgap~~V~~AGLfHSaYGt~   90 (399)
                      -.+..++..++.++-.+-..   .+-.-+.+-...-+|+.-..+.....|.++|..||+.+|...+...|||+|-+.=. 
T Consensus         7 ~~~~~l~~~~~~~~~~~~~~---~l~~A~~~A~~aH~gQ~rksGePYi~Hpl~VA~iLa~l~~D~~~i~AALLHDvvED-   82 (393)
T 1vj7_A            7 LTGEEVVALAAKYMNETDAA---FVKKALDYATAAHFYQVRKSGEPYIVHPIQVAGILADLHLDAVTVACGFLHDVVED-   82 (393)
T ss_dssp             CCHHHHHHHHHHHSCHHHHH---HHHHHHHHHHHHTTTCBCTTSCBTTHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHH-
T ss_pred             CCHHHHHHHHHHhCCHHHHH---HHHHHHHHHHHHhccCcCCCCCcHHHHHHHHHHHHHHhcCCHHHHHHHHhhhHHhc-
Confidence            34567777777666443111   12333445555566666544446899999999999999999999999999976532 


Q ss_pred             cccccCCCCCcchHHHHHhhchhhhHHhhhhccc
Q 015869           91 YVNLAIFDPNTGRDVVRGHVGDAAEKLIHLFCIV  124 (399)
Q Consensus        91 ~f~laifdp~~~R~~vr~lIG~~AE~LVylfct~  124 (399)
                              .....++|++..|++.-.||---.-+
T Consensus        83 --------t~~t~e~I~~~FG~~Va~lV~gvTk~  108 (393)
T 1vj7_A           83 --------TDITLDNIEFDFGKDVRDIVDGVTKL  108 (393)
T ss_dssp             --------SSCCHHHHHHHHCHHHHHHHHHHHHH
T ss_pred             --------CCCCHHHHHHHhCHHHHHHHHHHHhc
Confidence                    12457789999999988888654433

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=81.78  E-value=2  Score=36.59  Aligned_cols=49  Identities=18%  Similarity=0.169  Sum_probs=43.0

Q ss_pred             chhHHHHHHHHHHHHhhCCCcCchHHHHHHHHhc----cCCcHHHHHHHHHHHHH
Q 015869          333 KEKLEKAEELLLRCIEKNPFVGEPHVVLGQIYLA----KGEFEEAEREAGKGLML  383 (399)
Q Consensus       333 ~~~~d~a~~lL~~~i~~NP~VgEP~~vLAQ~~l~----~gr~~eA~~~A~~gL~l  383 (399)
                      ....++|.+.++++++.+|  .+.+.-|+.+|.+    .|++++|...-++++++
T Consensus       199 ~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~  251 (273)
T 1ouv_A          199 TKNFKEALARYSKACELEN--GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKL  251 (273)
T ss_dssp             CCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHH
T ss_pred             CccHHHHHHHHHHHHhCCC--HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHc
Confidence            4458899999999999998  6778899999999    99999999988888765

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=81.55  E-value=1.5  Score=38.96  Aligned_cols=69  Identities=13%  Similarity=0.021  Sum_probs=51.0

Q ss_pred             HHHHHHHHHhhcc-CCCCC------------chhHHHHHHHHHHHHhhCCCcCc-hHHHHHHHHhccCCcHHHHHHHHHH
Q 015869          315 IEARDLYWEAVCG-NSDGS------------KEKLEKAEELLLRCIEKNPFVGE-PHVVLGQIYLAKGEFEEAEREAGKG  380 (399)
Q Consensus       315 ~aArdlYWeav~~-~~~~~------------~~~~d~a~~lL~~~i~~NP~VgE-P~~vLAQ~~l~~gr~~eA~~~A~~g  380 (399)
                      ..|++.|=+||.. +.+..            ....+.|.++++++++.+|--.+ -++-+++++...|++++|...-.++
T Consensus        81 ~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a  160 (308)
T 2ond_A           81 DEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKA  160 (308)
T ss_dssp             HHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence            5677888888751 22221            12367888999999999887666 6888899999999999988888887


Q ss_pred             HHH
Q 015869          381 LML  383 (399)
Q Consensus       381 L~l  383 (399)
                      +++
T Consensus       161 ~~~  163 (308)
T 2ond_A          161 RED  163 (308)
T ss_dssp             HTS
T ss_pred             Hhc
Confidence            764

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=80.38  E-value=2.2  Score=33.33  Aligned_cols=51  Identities=10%  Similarity=0.093  Sum_probs=40.2

Q ss_pred             chhHHHHHHHHHHHHhhCCCcCch-------HHHHHHHHhccCCcHHHHHHHHHHHHH
Q 015869          333 KEKLEKAEELLLRCIEKNPFVGEP-------HVVLGQIYLAKGEFEEAEREAGKGLML  383 (399)
Q Consensus       333 ~~~~d~a~~lL~~~i~~NP~VgEP-------~~vLAQ~~l~~gr~~eA~~~A~~gL~l  383 (399)
                      ....+.|.+.+.++|+.+|-....       +.-|+.+|...|+|++|...-+++|+.
T Consensus        55 ~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~  112 (127)
T 4gcn_A           55 EKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSE  112 (127)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             hhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            344889999999999998865543       445677788889999999988888763

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	399
d1zbpa1	264	e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V	3e-04
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	4e-04
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	5e-04

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

 Score = 40.0 bits (93), Expect = 3e-04
 Identities = 13/52 (25%), Positives = 27/52 (51%)

Query: 332 SKEKLEKAEELLLRCIEKNPFVGEPHVVLGQIYLAKGEFEEAEREAGKGLML 383
           S+ +L++A ELL+  I+ +P          ++    G+FE A+ +  + + L
Sbjct: 8   SEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKL 59

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.0 bits (92), Expect = 4e-04
 Identities = 11/63 (17%), Positives = 23/63 (36%)

Query: 321 YWEAVCGNSDGSKEKLEKAEELLLRCIEKNPFVGEPHVVLGQIYLAKGEFEEAEREAGKG 380
                  N    +  +E+A  L  + +E  P     H  L  +   +G+ +EA     + 
Sbjct: 306 DSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEA 365

Query: 381 LML 383
           + +
Sbjct: 366 IRI 368

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.7 bits (91), Expect = 5e-04
 Identities = 6/57 (10%), Positives = 18/57 (31%)

Query: 327 GNSDGSKEKLEKAEELLLRCIEKNPFVGEPHVVLGQIYLAKGEFEEAEREAGKGLML 383
            + +      E AE   ++   + P      ++L  I+      + +   +   +  
Sbjct: 6   AHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQ 62

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	399
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	96.12
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	95.87
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	95.86
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	95.59
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	95.47
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	95.4
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	95.38
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	95.21
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	95.02
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	94.7
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	94.53
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	94.5
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	94.43
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	94.35
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	94.32
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	94.28
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	94.12
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	94.07
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	93.84
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	92.6
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	92.09
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	91.55
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	91.3
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	91.29
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	90.62
d1vj7a1	192	Stringent response-like protein RelA N-terminal do	89.8
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	88.3
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	87.64
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	86.98
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	86.41
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	85.94
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	82.96
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	82.5
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	81.43
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	81.42

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.12  E-value=0.0039  Score=47.64  Aligned_cols=48  Identities=19%  Similarity=0.240  Sum_probs=24.4

Q ss_pred             HHHHHHHHHHHHhhCCCcCchHHHHHHHHhccCCcHHHHHHHHHHHHH
Q 015869          336 LEKAEELLLRCIEKNPFVGEPHVVLGQIYLAKGEFEEAEREAGKGLML  383 (399)
Q Consensus       336 ~d~a~~lL~~~i~~NP~VgEP~~vLAQ~~l~~gr~~eA~~~A~~gL~l  383 (399)
                      .+.|...+.++|++||--.+-+.-+|++|+..|+|++|.....+++++
T Consensus        19 ~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~   66 (117)
T d1elwa_          19 IDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDL   66 (117)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCcchhhhhcccccccccccccccchhhhhHHHh
Confidence            444555555555555555555555555555555555555555544443

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=95.87  E-value=0.0046  Score=55.00  Aligned_cols=50  Identities=24%  Similarity=0.383  Sum_probs=47.1

Q ss_pred             hhHHHHHHHHHHHHhhCCCcCchHHHHHHHHhccCCcHHHHHHHHHHHHH
Q 015869          334 EKLEKAEELLLRCIEKNPFVGEPHVVLGQIYLAKGEFEEAEREAGKGLML  383 (399)
Q Consensus       334 ~~~d~a~~lL~~~i~~NP~VgEP~~vLAQ~~l~~gr~~eA~~~A~~gL~l  383 (399)
                      ..++.|.+.++++|+.||=-.+.+..|+|+|+..|++++|..+-+.++++
T Consensus        10 G~l~eAl~~l~~al~~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l   59 (264)
T d1zbpa1          10 GQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKL   59 (264)
T ss_dssp             TCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence            34889999999999999999999999999999999999999999998876

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.86  E-value=0.0063  Score=47.97  Aligned_cols=50  Identities=20%  Similarity=0.030  Sum_probs=44.8

Q ss_pred             hhHHHHHHHHHHHHhhCCCcCchHHHHHHHHhccCCcHHHHHHHHHHHHH
Q 015869          334 EKLEKAEELLLRCIEKNPFVGEPHVVLGQIYLAKGEFEEAEREAGKGLML  383 (399)
Q Consensus       334 ~~~d~a~~lL~~~i~~NP~VgEP~~vLAQ~~l~~gr~~eA~~~A~~gL~l  383 (399)
                      ..++.|...+.++|+.||--.+.+..+|++|...|+|++|....++++++
T Consensus        58 ~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~~g~~~eA~~~~~~a~~~  107 (159)
T d1a17a_          58 ECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKV  107 (159)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             cccchHHHHHHHHHHHcccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence            34788999999999999999999999999999999999999999888876

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.59  E-value=0.01  Score=45.81  Aligned_cols=58  Identities=14%  Similarity=0.166  Sum_probs=52.7

Q ss_pred             hHHHHHHHHHHHHhhCCCcCchHHHHHHHHhccCCcHHHHHHHHHHHHHHHhhCCCcc
Q 015869          335 KLEKAEELLLRCIEKNPFVGEPHVVLGQIYLAKGEFEEAEREAGKGLMLLLEWGSPWD  392 (399)
Q Consensus       335 ~~d~a~~lL~~~i~~NP~VgEP~~vLAQ~~l~~gr~~eA~~~A~~gL~ll~~WG~~WD  392 (399)
                      ..++|.....++|+.||-..+.+.-+|++|...|+|++|....+++|++--.+...|-
T Consensus        19 ~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~   76 (128)
T d1elra_          19 DFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYR   76 (128)
T ss_dssp             CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHH
T ss_pred             CHHHHHHHHHHHHHhCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHH
Confidence            4789999999999999999999999999999999999999999999998877766553

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=95.47  E-value=0.012  Score=44.64  Aligned_cols=49  Identities=20%  Similarity=0.077  Sum_probs=39.0

Q ss_pred             hHHHHHHHHHHHHhhCCCcCchHHHHHHHHhccCCcHHHHHHHHHHHHH
Q 015869          335 KLEKAEELLLRCIEKNPFVGEPHVVLGQIYLAKGEFEEAEREAGKGLML  383 (399)
Q Consensus       335 ~~d~a~~lL~~~i~~NP~VgEP~~vLAQ~~l~~gr~~eA~~~A~~gL~l  383 (399)
                      ..+.|...++++|++||---+-+.-||++|...|++++|...-++++++
T Consensus        31 ~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~   79 (112)
T d1hxia_          31 NLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARML   79 (112)
T ss_dssp             CHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHhhhcccccccchhhhhhhhhhhhhhhHHHhhccccccccc
Confidence            3677888888888888877778888888888888888888877777765

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.40  E-value=0.0062  Score=47.82  Aligned_cols=54  Identities=24%  Similarity=0.195  Sum_probs=45.6

Q ss_pred             hHHHHHHHHHHHHhhCCCcCchHHHHHHHHhccCCcHHHHHHHHHHHHHHHhhC
Q 015869          335 KLEKAEELLLRCIEKNPFVGEPHVVLGQIYLAKGEFEEAEREAGKGLMLLLEWG  388 (399)
Q Consensus       335 ~~d~a~~lL~~~i~~NP~VgEP~~vLAQ~~l~~gr~~eA~~~A~~gL~ll~~WG  388 (399)
                      ..+.|...+.+||+.||--.+++.-||++|...|+|++|...-.++|++--.-.
T Consensus        53 ~~~~Ai~~~~~al~l~p~~~~a~~~lg~~~~~l~~~~~A~~~~~~al~l~p~~~  106 (201)
T d2c2la1          53 QPEQALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQR  106 (201)
T ss_dssp             CHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred             hhhhhhHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccH
Confidence            377888999999999998888899999999999999999988888888765433

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.38  E-value=0.012  Score=46.30  Aligned_cols=51  Identities=22%  Similarity=0.152  Sum_probs=47.7

Q ss_pred             chhHHHHHHHHHHHHhhCCCcCchHHHHHHHHhccCCcHHHHHHHHHHHHH
Q 015869          333 KEKLEKAEELLLRCIEKNPFVGEPHVVLGQIYLAKGEFEEAEREAGKGLML  383 (399)
Q Consensus       333 ~~~~d~a~~lL~~~i~~NP~VgEP~~vLAQ~~l~~gr~~eA~~~A~~gL~l  383 (399)
                      ....+.|.+.+.++++.||--.+-+.-||++|+..|++++|...-+++|++
T Consensus        23 ~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~   73 (159)
T d1a17a_          23 AKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIEL   73 (159)
T ss_dssp             TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHhhhccccchhhhhhhhhhHHHHHhccccchHHHHHHHHHHH
Confidence            344889999999999999999999999999999999999999999999886

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.21  E-value=0.0085  Score=49.34  Aligned_cols=49  Identities=20%  Similarity=0.318  Sum_probs=45.5

Q ss_pred             hHHHHHHHHHHHHhhCCCcCchHHHHHHHHhccCCcHHHHHHHHHHHHH
Q 015869          335 KLEKAEELLLRCIEKNPFVGEPHVVLGQIYLAKGEFEEAEREAGKGLML  383 (399)
Q Consensus       335 ~~d~a~~lL~~~i~~NP~VgEP~~vLAQ~~l~~gr~~eA~~~A~~gL~l  383 (399)
                      ..+.|.+.++++++.||=..+-+.-||++|...|++++|...-+++|++
T Consensus       320 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l  368 (388)
T d1w3ba_         320 NIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI  368 (388)
T ss_dssp             CHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT
T ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            4788999999999999999999999999999999999999999998865

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.02  E-value=0.015  Score=45.56  Aligned_cols=50  Identities=26%  Similarity=0.260  Sum_probs=46.6

Q ss_pred             hhHHHHHHHHHHHHhhCCCcCchHHHHHHHHhccCCcHHHHHHHHHHHHH
Q 015869          334 EKLEKAEELLLRCIEKNPFVGEPHVVLGQIYLAKGEFEEAEREAGKGLML  383 (399)
Q Consensus       334 ~~~d~a~~lL~~~i~~NP~VgEP~~vLAQ~~l~~gr~~eA~~~A~~gL~l  383 (399)
                      ...+.|...+.++|++||-...-+.-+|++|+..|+|++|.....++|++
T Consensus        18 g~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l   67 (201)
T d2c2la1          18 RKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALEL   67 (201)
T ss_dssp             TCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS
T ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHh
Confidence            34889999999999999999999999999999999999999999999875

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.70  E-value=0.023  Score=46.67  Aligned_cols=47  Identities=26%  Similarity=0.482  Sum_probs=34.4

Q ss_pred             HHHHHHHHHHHHhhCCCcCchHHHHHHHHhccCCcHHHHHHHHHHHH
Q 015869          336 LEKAEELLLRCIEKNPFVGEPHVVLGQIYLAKGEFEEAEREAGKGLM  382 (399)
Q Consensus       336 ~d~a~~lL~~~i~~NP~VgEP~~vLAQ~~l~~gr~~eA~~~A~~gL~  382 (399)
                      .+.|...++++++.||-..+-+.-||++|...|++++|...-..+++
T Consensus        49 ~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~g~~~~A~~~~~~~~~   95 (388)
T d1w3ba_          49 LDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALR   95 (388)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHhhhhccccccccccccccc
Confidence            56777777777777777777777777777777777777766665554

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.53  E-value=0.018  Score=47.54  Aligned_cols=64  Identities=16%  Similarity=0.243  Sum_probs=55.4

Q ss_pred             HHHHHHhhccCCCCCchhHHHHHHHHHHHHhhCCCcCchHHHHHHHHhccCCcHHHHHHHHHHHHHH
Q 015869          318 RDLYWEAVCGNSDGSKEKLEKAEELLLRCIEKNPFVGEPHVVLGQIYLAKGEFEEAEREAGKGLMLL  384 (399)
Q Consensus       318 rdlYWeav~~~~~~~~~~~d~a~~lL~~~i~~NP~VgEP~~vLAQ~~l~~gr~~eA~~~A~~gL~ll  384 (399)
                      +-+|.-..|   -......++|++.+.+||+.||--...+.-++.+|...|+|++|...-+++|.++
T Consensus        37 ~~~~nlG~~---~~~~g~~~~A~~~~~kAl~ldp~~~~a~~~~g~~~~~~g~~~~A~~~~~kAl~~~  100 (192)
T d1hh8a_          37 RICFNIGCM---YTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQL  100 (192)
T ss_dssp             HHHHHHHHH---HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHH---HHHcCCchhHHHHHHHHHHHhhhhhhhHHHHHHHHHhhccHHHHHHHHHHHHHhC
Confidence            347777766   3344559999999999999999999999999999999999999999999998754

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=94.50  E-value=0.032  Score=45.05  Aligned_cols=65  Identities=23%  Similarity=0.150  Sum_probs=34.9

Q ss_pred             HHHHHHHHhhccCCCCCchhHHHHHHHHHHHHhhCCCcCchHHHHHHHHhccCCcHHHHHHHHHHHHH
Q 015869          316 EARDLYWEAVCGNSDGSKEKLEKAEELLLRCIEKNPFVGEPHVVLGQIYLAKGEFEEAEREAGKGLML  383 (399)
Q Consensus       316 aArdlYWeav~~~~~~~~~~~d~a~~lL~~~i~~NP~VgEP~~vLAQ~~l~~gr~~eA~~~A~~gL~l  383 (399)
                      -|+-+|-..++   -......+.|.+.+.++|+.||=-.+-+.-||.+|...|++++|...-.+++++
T Consensus        36 ~a~~~~~~G~~---y~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~  100 (259)
T d1xnfa_          36 RAQLLYERGVL---YDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLEL  100 (259)
T ss_dssp             HHHHHHHHHHH---HHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHH---HHHCCCHHHHHHHHHHhhccCCCCHHHHhhhchHHHHHHHHHHhhhhhhHHHHH
Confidence            34445544444   112223555666666666666655555555666666666666666555555554

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=94.43  E-value=0.015  Score=43.97  Aligned_cols=62  Identities=15%  Similarity=-0.084  Sum_probs=51.5

Q ss_pred             HHHHHHHhhccCCCCCchhHHHHHHHHHHHHhhCCCcCchHHHHHHHHhccCCcHHHHHHHHHHH
Q 015869          317 ARDLYWEAVCGNSDGSKEKLEKAEELLLRCIEKNPFVGEPHVVLGQIYLAKGEFEEAEREAGKGL  381 (399)
Q Consensus       317 ArdlYWeav~~~~~~~~~~~d~a~~lL~~~i~~NP~VgEP~~vLAQ~~l~~gr~~eA~~~A~~gL  381 (399)
                      +..+++-+.+   -......+.|+..+++||+.||--.+-+.-||.+|.+.|++++|.+.-++.|
T Consensus        50 ~~a~~~lg~~---~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~~~g~~~~A~~~l~~~l  111 (112)
T d1hxia_          50 EEAWRSLGLT---QAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWL  111 (112)
T ss_dssp             HHHHHHHHHH---HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chhhhhhhhh---hhhhhhHHHhhcccccccccccccccchHHHHHHHHHCCCHHHHHHHHHHHh
Confidence            4556676666   2233458899999999999999999999999999999999999988777654

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=94.35  E-value=0.035  Score=44.82  Aligned_cols=62  Identities=13%  Similarity=0.029  Sum_probs=52.5

Q ss_pred             HHHHHhhccCCCCCchhHHHHHHHHHHHHhhCCCcCchHHHHHHHHhccCCcHHHHHHHHHHHHH
Q 015869          319 DLYWEAVCGNSDGSKEKLEKAEELLLRCIEKNPFVGEPHVVLGQIYLAKGEFEEAEREAGKGLML  383 (399)
Q Consensus       319 dlYWeav~~~~~~~~~~~d~a~~lL~~~i~~NP~VgEP~~vLAQ~~l~~gr~~eA~~~A~~gL~l  383 (399)
                      .+|--+++   -......+.|.+.++++++.||--.+.+.-|+.+|...|++++|....+++++.
T Consensus        73 a~~~lg~~---~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~  134 (259)
T d1xnfa_          73 VFNYLGIY---LTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD  134 (259)
T ss_dssp             HHHHHHHH---HHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHhhhchH---HHHHHHHHHhhhhhhHHHHHHhhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence            35555555   223344889999999999999999999999999999999999999999999875

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.32  E-value=0.027  Score=47.05  Aligned_cols=52  Identities=21%  Similarity=0.141  Sum_probs=47.8

Q ss_pred             hhHHHHHHHHHHHHhhCCCcCchHHHHHHHHhccCCcHHHHHHHHHHHHHHH
Q 015869          334 EKLEKAEELLLRCIEKNPFVGEPHVVLGQIYLAKGEFEEAEREAGKGLMLLL  385 (399)
Q Consensus       334 ~~~d~a~~lL~~~i~~NP~VgEP~~vLAQ~~l~~gr~~eA~~~A~~gL~ll~  385 (399)
                      ...+.|.+.++++++.||--.+.+.-||.+|.+.|+|++|...-+++|++--
T Consensus       220 g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p  271 (323)
T d1fcha_         220 NQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQR  271 (323)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred             ccchhHHHHHHHHHHHhhccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence            3478999999999999999999999999999999999999999999998743

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.28  E-value=0.03  Score=46.73  Aligned_cols=85  Identities=22%  Similarity=0.157  Sum_probs=48.0

Q ss_pred             cccccccccccCChhhHHHHHHHHHHhhccCCCC------------CchhHHHHHHHHHHHHhhCCCcCchHHHHHHHHh
Q 015869          298 VPPVFENCTRILDAKEQIEARDLYWEAVCGNSDG------------SKEKLEKAEELLLRCIEKNPFVGEPHVVLGQIYL  365 (399)
Q Consensus       298 iPPVF~~CT~vL~~~dq~aArdlYWeav~~~~~~------------~~~~~d~a~~lL~~~i~~NP~VgEP~~vLAQ~~l  365 (399)
                      .|-.|+.--..+..++-..|.+.|=+++..+.+.            .....+.|...+.++++.||--.+++.-||.+|.
T Consensus        19 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~   98 (323)
T d1fcha_          19 HPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFT   98 (323)
T ss_dssp             CSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhcccccccccccccccccc
Confidence            3334555545555555555555555555422221            1122455666666666666666666666677776


Q ss_pred             ccCCcHHHHHHHHHHHH
Q 015869          366 AKGEFEEAEREAGKGLM  382 (399)
Q Consensus       366 ~~gr~~eA~~~A~~gL~  382 (399)
                      ..|++++|...-..+++
T Consensus        99 ~~~~~~~A~~~~~~~~~  115 (323)
T d1fcha_          99 NESLQRQACEILRDWLR  115 (323)
T ss_dssp             HTTCHHHHHHHHHHHHH
T ss_pred             ccccccccccchhhHHH
Confidence            77776666665555544

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.12  E-value=0.029  Score=42.56  Aligned_cols=62  Identities=21%  Similarity=0.103  Sum_probs=51.4

Q ss_pred             HHHHHhhccCCCCCchhHHHHHHHHHHHHhhCCCcCchHHHHHHHHhccCCcHHHHHHHHHHHHH
Q 015869          319 DLYWEAVCGNSDGSKEKLEKAEELLLRCIEKNPFVGEPHVVLGQIYLAKGEFEEAEREAGKGLML  383 (399)
Q Consensus       319 dlYWeav~~~~~~~~~~~d~a~~lL~~~i~~NP~VgEP~~vLAQ~~l~~gr~~eA~~~A~~gL~l  383 (399)
                      -.|.-+.|   -......+.|...+.++|+.||=-.+++.-++++|...|+|++|...-++++++
T Consensus        39 ~~~~~a~~---~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~a~~~  100 (117)
T d1elwa_          39 LYSNRSAA---YAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKH  100 (117)
T ss_dssp             HHHHHHHH---HHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred             hhhccccc---ccccccccccchhhhhHHHhccchhhHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence            34444444   223344788999999999999999999999999999999999999999988864

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.07  E-value=0.033  Score=43.64  Aligned_cols=78  Identities=13%  Similarity=0.075  Sum_probs=57.5

Q ss_pred             cccCChhhHHHHHHHHHHhhccCCCC---------------CchhHHHHHHHHHHHHhhCCCcCc--hHHHHHHHHhccC
Q 015869          306 TRILDAKEQIEARDLYWEAVCGNSDG---------------SKEKLEKAEELLLRCIEKNPFVGE--PHVVLGQIYLAKG  368 (399)
Q Consensus       306 T~vL~~~dq~aArdlYWeav~~~~~~---------------~~~~~d~a~~lL~~~i~~NP~VgE--P~~vLAQ~~l~~g  368 (399)
                      ...++.+|=..|...|=.++.-+.+.               ...+.++|.++|+++++++|--.-  -..-||.+|...|
T Consensus         7 n~~~~~~~l~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y~~~g   86 (122)
T d1nzna_           7 NELVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLK   86 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTT
T ss_pred             HHhcCHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHh
Confidence            44556666677777777766533322               123356799999999999875432  3557999999999


Q ss_pred             CcHHHHHHHHHHHHH
Q 015869          369 EFEEAEREAGKGLML  383 (399)
Q Consensus       369 r~~eA~~~A~~gL~l  383 (399)
                      +|++|.+.-+++|++
T Consensus        87 ~~~~A~~~~~~aL~~  101 (122)
T d1nzna_          87 EYEKALKYVRGLLQT  101 (122)
T ss_dssp             CHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHh
Confidence            999999999999875

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.84  E-value=0.044  Score=44.12  Aligned_cols=60  Identities=23%  Similarity=0.162  Sum_probs=50.8

Q ss_pred             HHHhhccCCCCCchhHHHHHHHHHHHHhhCCCcCchHHHHHHHHhccCCcHHHHHHHHHHHHH
Q 015869          321 YWEAVCGNSDGSKEKLEKAEELLLRCIEKNPFVGEPHVVLGQIYLAKGEFEEAEREAGKGLML  383 (399)
Q Consensus       321 YWeav~~~~~~~~~~~d~a~~lL~~~i~~NP~VgEP~~vLAQ~~l~~gr~~eA~~~A~~gL~l  383 (399)
                      +--++|   -......+.|...++++|++||=--..+.-+|++|...|+|++|...-++++++
T Consensus        66 ~nla~~---y~k~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l  125 (170)
T d1p5qa1          66 LNLAMC---HLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQL  125 (170)
T ss_dssp             HHHHHH---HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHH---HHhhhhcccccchhhhhhhccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence            345555   223445899999999999999998899999999999999999999999988875

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=92.60  E-value=0.09  Score=41.55  Aligned_cols=51  Identities=16%  Similarity=0.132  Sum_probs=47.3

Q ss_pred             chhHHHHHHHHHHHHhhCCCcCchHHHHHHHHhccCCcHHHHHHHHHHHHH
Q 015869          333 KEKLEKAEELLLRCIEKNPFVGEPHVVLGQIYLAKGEFEEAEREAGKGLML  383 (399)
Q Consensus       333 ~~~~d~a~~lL~~~i~~NP~VgEP~~vLAQ~~l~~gr~~eA~~~A~~gL~l  383 (399)
                      ....+.|.....++|++||--.+.++-+|.+|.+.|+|++|...-.++|++
T Consensus        90 ~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l  140 (169)
T d1ihga1          90 MSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEI  140 (169)
T ss_dssp             TTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             hcccchhhhhhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHh
Confidence            344889999999999999999999999999999999999999999999886

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=92.09  E-value=0.11  Score=41.04  Aligned_cols=50  Identities=20%  Similarity=0.115  Sum_probs=46.5

Q ss_pred             hhHHHHHHHHHHHHhhCCCcCchHHHHHHHHhccCCcHHHHHHHHHHHHH
Q 015869          334 EKLEKAEELLLRCIEKNPFVGEPHVVLGQIYLAKGEFEEAEREAGKGLML  383 (399)
Q Consensus       334 ~~~d~a~~lL~~~i~~NP~VgEP~~vLAQ~~l~~gr~~eA~~~A~~gL~l  383 (399)
                      ...+.|.+...++|++||--..-+.-+|++|...|+|++|...-+.++++
T Consensus        81 ~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l  130 (153)
T d2fbna1          81 KDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASL  130 (153)
T ss_dssp             TCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             cccchhhhhhhccccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHh
Confidence            34788999999999999999999999999999999999999999998876

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=91.55  E-value=0.17  Score=41.82  Aligned_cols=51  Identities=12%  Similarity=-0.014  Sum_probs=46.7

Q ss_pred             hHHHHHHHHHHHHhhCCCcCchHHHHHHHHhccCCcHHHHHHHHHHHHHHH
Q 015869          335 KLEKAEELLLRCIEKNPFVGEPHVVLGQIYLAKGEFEEAEREAGKGLMLLL  385 (399)
Q Consensus       335 ~~d~a~~lL~~~i~~NP~VgEP~~vLAQ~~l~~gr~~eA~~~A~~gL~ll~  385 (399)
                      ..+.|...++++|+.||+--.-|..|.++|...||+++|.+.=++..+.|.
T Consensus        82 ~~~~Al~~~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~  132 (179)
T d2ff4a2          82 RASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLA  132 (179)
T ss_dssp             CHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHH
T ss_pred             CchHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence            478899999999999999999999999999999999999988888777663

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=91.30  E-value=0.23  Score=39.62  Aligned_cols=56  Identities=20%  Similarity=0.134  Sum_probs=46.0

Q ss_pred             hhHHHHHHHHHHHHhhCCCcCch-----HHHHHHHHhccCCcHHHHHHHHHHHHHHHhhCC
Q 015869          334 EKLEKAEELLLRCIEKNPFVGEP-----HVVLGQIYLAKGEFEEAEREAGKGLMLLLEWGS  389 (399)
Q Consensus       334 ~~~d~a~~lL~~~i~~NP~VgEP-----~~vLAQ~~l~~gr~~eA~~~A~~gL~ll~~WG~  389 (399)
                      .+.++|.++++++++.+|=...+     +..|+.+|...|+|++|...-++++++.-..+.
T Consensus        26 g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~   86 (366)
T d1hz4a_          26 GNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDV   86 (366)
T ss_dssp             TCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTC
T ss_pred             CCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcc
Confidence            34788999999999999875443     445789999999999999999999988766554

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=91.29  E-value=0.071  Score=42.76  Aligned_cols=53  Identities=26%  Similarity=0.236  Sum_probs=44.6

Q ss_pred             HHHHHHHHHHHHh------hCCCcCchHHHHHHHHhccCCcHHHHHHHHHHHHHHHhhC
Q 015869          336 LEKAEELLLRCIE------KNPFVGEPHVVLGQIYLAKGEFEEAEREAGKGLMLLLEWG  388 (399)
Q Consensus       336 ~d~a~~lL~~~i~------~NP~VgEP~~vLAQ~~l~~gr~~eA~~~A~~gL~ll~~WG  388 (399)
                      .+.|.+.+++++.      ..|...+-++.||++|...|++++|.+.-+++|++.-.=|
T Consensus       267 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~l~~~~~  325 (366)
T d1hz4a_         267 FEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTG  325 (366)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhhcC
Confidence            6778888888874      4577777889999999999999999999999999865544

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=90.62  E-value=0.16  Score=40.35  Aligned_cols=52  Identities=21%  Similarity=0.134  Sum_probs=47.5

Q ss_pred             CchhHHHHHHHHHHHHhhCCCcCchHHHHHHHHhccCCcHHHHHHHHHHHHH
Q 015869          332 SKEKLEKAEELLLRCIEKNPFVGEPHVVLGQIYLAKGEFEEAEREAGKGLML  383 (399)
Q Consensus       332 ~~~~~d~a~~lL~~~i~~NP~VgEP~~vLAQ~~l~~gr~~eA~~~A~~gL~l  383 (399)
                      .....+.|.+...+++..||=-..++.-+|++|...|+|++|...-.++|++
T Consensus        76 ~l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l  127 (168)
T d1kt1a1          76 KLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV  127 (168)
T ss_dssp             HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS
T ss_pred             HhhhcccchhhhhhhhhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            3445889999999999999999999999999999999999999999998865

>d1vj7a1 a.211.1.1 (A:5-196) Stringent response-like protein RelA N-terminal domain {Streptococcus equisimilis [TaxId: 119602]}

class: All alpha proteins
fold: HD-domain/PDEase-like
superfamily: HD-domain/PDEase-like
family: HD domain
domain: Stringent response-like protein RelA N-terminal domain
species: Streptococcus equisimilis [TaxId: 119602]

Probab=89.80  E-value=0.29  Score=41.46  Aligned_cols=98  Identities=13%  Similarity=0.208  Sum_probs=70.3

Q ss_pred             HHHHHHhcccchhhhHhhcCCC-chhHHHHHHHhCCCccccCCCChHhhHHHHHHHHHhcCCchHHHHhccchhcccCcc
Q 015869           13 LETLVASARPFLRGELEAIDKN-LPSLIAVLRSVGAGECWHKHGSFLEHLVDIYRILKIWKAPDCVCLCGLFHSAYSNSY   91 (399)
Q Consensus        13 ~~~l~~~arpfLr~e~~~~D~~-Lp~ll~~Lr~~GAge~~Hk~GTf~~HL~~V~~iL~~Wgap~~V~~AGLfHSaYGt~~   91 (399)
                      .+.++..++-+|-.+    |.+ +-.-+.+-...-.|+.-.-|-.+..|.+.|..+|..+|...+...|||+|-++--  
T Consensus         5 ~e~~l~~~~~yl~~~----d~~~i~~A~~~A~~~H~gq~r~sG~py~~H~~~VA~iL~~~~~d~~~i~AalLhd~~ed--   78 (192)
T d1vj7a1           5 GEEVVALAAKYMNET----DAAFVKKALDYATAAHFYQVRKSGEPYIVHPIQVAGILADLHLDAVTVACGFLHDVVED--   78 (192)
T ss_dssp             HHHHHHHHHHHSCHH----HHHHHHHHHHHHHHHTTTCBCTTSCBTTHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHH--
T ss_pred             HHHHHHHHHHhCCHH----HHHHHHHHHHHHHHHHcCCcccChHHHHHHHHHHHHHHHHhcCChHHhhhhheechhhh--
Confidence            455666666665332    221 2344566666777776543338999999999999999999999999999976642  


Q ss_pred             ccccCCCCCcchHHHHHhhchhhhHHhhhhcc
Q 015869           92 VNLAIFDPNTGRDVVRGHVGDAAEKLIHLFCI  123 (399)
Q Consensus        92 f~laifdp~~~R~~vr~lIG~~AE~LVylfct  123 (399)
                             ....-.+|+..+|.+.-.||.--..
T Consensus        79 -------t~~t~e~I~~~FG~~Va~lV~~ltk  103 (192)
T d1vj7a1          79 -------TDITLDNIEFDFGKDVRDIVDGVTK  103 (192)
T ss_dssp             -------SSCCHHHHHHHHCHHHHHHHHHHHH
T ss_pred             -------chhHHHHHHHhcchhHHHHHHHHHh
Confidence                   1245679999999999998865443

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.30  E-value=0.31  Score=45.38  Aligned_cols=49  Identities=16%  Similarity=0.150  Sum_probs=45.4

Q ss_pred             hhHHHHHHHHHHHHhhCCCcCchHHHHHHHHhccCCcHHHHHHHHHHHH
Q 015869          334 EKLEKAEELLLRCIEKNPFVGEPHVVLGQIYLAKGEFEEAEREAGKGLM  382 (399)
Q Consensus       334 ~~~d~a~~lL~~~i~~NP~VgEP~~vLAQ~~l~~gr~~eA~~~A~~gL~  382 (399)
                      ...++|..-..+|+++||-.|.||--||.+|...|++.+|...=.++|.
T Consensus       166 ~~~~~A~~~y~~A~~l~P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~  214 (497)
T d1ya0a1         166 NQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIA  214 (497)
T ss_dssp             TCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHS
T ss_pred             ccHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            3488999999999999999999999999999999999999998888774

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=87.64  E-value=0.33  Score=37.82  Aligned_cols=59  Identities=15%  Similarity=-0.019  Sum_probs=43.2

Q ss_pred             HHHHHHHHHHHHhhCCCcCc-----------hHHHHHHHHhccCCcHHHHHHHHHHHHHHHhhCCCcccc
Q 015869          336 LEKAEELLLRCIEKNPFVGE-----------PHVVLGQIYLAKGEFEEAEREAGKGLMLLLEWGSPWDKR  394 (399)
Q Consensus       336 ~d~a~~lL~~~i~~NP~VgE-----------P~~vLAQ~~l~~gr~~eA~~~A~~gL~ll~~WG~~WDKR  394 (399)
                      ++.|.+-..++++.+|-.++           -+.-++++|...|++++|...-.++|++.-+.+..+.++
T Consensus        71 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~~~~~~~~~~  140 (156)
T d2hr2a1          71 FDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGK  140 (156)
T ss_dssp             HHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTH
T ss_pred             cchhhHhhhhhhhcccccccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhHHhhchHHHH
Confidence            45555555555554432222           356789999999999999999999999998888776543

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.98  E-value=0.24  Score=36.21  Aligned_cols=50  Identities=14%  Similarity=0.017  Sum_probs=40.7

Q ss_pred             hhHHHHHHHHHHHHhhCCCcCch-------HHHHHHHHhccCCcHHHHHHHHHHHHH
Q 015869          334 EKLEKAEELLLRCIEKNPFVGEP-------HVVLGQIYLAKGEFEEAEREAGKGLML  383 (399)
Q Consensus       334 ~~~d~a~~lL~~~i~~NP~VgEP-------~~vLAQ~~l~~gr~~eA~~~A~~gL~l  383 (399)
                      .+.+.|...+++|++.+|--.++       +--||.+|...|+|++|...-+++|++
T Consensus        19 g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l   75 (95)
T d1tjca_          19 ADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL   75 (95)
T ss_dssp             TCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHh
Confidence            34778888899998887655444       345899999999999999999999986

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.41  E-value=1.3  Score=35.06  Aligned_cols=73  Identities=19%  Similarity=0.201  Sum_probs=50.2

Q ss_pred             CChhhHHHHHHHHHHhhccCCCCCchhHHHHHHHHHHHHhhCCCcCc---------------hHHHHHHHHhccCCcHHH
Q 015869          309 LDAKEQIEARDLYWEAVCGNSDGSKEKLEKAEELLLRCIEKNPFVGE---------------PHVVLGQIYLAKGEFEEA  373 (399)
Q Consensus       309 L~~~dq~aArdlYWeav~~~~~~~~~~~d~a~~lL~~~i~~NP~VgE---------------P~~vLAQ~~l~~gr~~eA  373 (399)
                      |++.+.+.+-..|.+-  |+.--.....+.|....++||...|-...               .+.-+|++|+..|+|++|
T Consensus         4 ~~~~ek~~~a~~l~~~--G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~~A   81 (170)
T d1p5qa1           4 MNSEEKLEQSTIVKER--GTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAA   81 (170)
T ss_dssp             CCHHHHHHHHHHHHHH--HHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             CCHHHHHHHHHHHHHH--HHHHHHcCCHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHHhhhhcccc
Confidence            5566666655555542  00011223477788888888888765443               234589999999999999


Q ss_pred             HHHHHHHHHH
Q 015869          374 EREAGKGLML  383 (399)
Q Consensus       374 ~~~A~~gL~l  383 (399)
                      ....+++|++
T Consensus        82 ~~~~~~al~~   91 (170)
T d1p5qa1          82 IESCNKALEL   91 (170)
T ss_dssp             HHHHHHHHHH
T ss_pred             cchhhhhhhc
Confidence            9999999986

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=85.94  E-value=0.69  Score=37.92  Aligned_cols=48  Identities=15%  Similarity=0.035  Sum_probs=37.3

Q ss_pred             HHHHHHHHHHHHhhCC--C-c---Cc----------------hHHHHHHHHhccCCcHHHHHHHHHHHHH
Q 015869          336 LEKAEELLLRCIEKNP--F-V---GE----------------PHVVLGQIYLAKGEFEEAEREAGKGLML  383 (399)
Q Consensus       336 ~d~a~~lL~~~i~~NP--~-V---gE----------------P~~vLAQ~~l~~gr~~eA~~~A~~gL~l  383 (399)
                      ++.|.+.+.++++.+|  + .   .+                =+.-++++|+..|+|++|...++++|++
T Consensus        27 ~e~A~~~~~~AL~l~rG~~l~~~~~~~w~~~~r~~l~~~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~   96 (179)
T d2ff4a2          27 FEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELEALTFE   96 (179)
T ss_dssp             HHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhCcccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHh
Confidence            6678888888888754  1 1   11                1467899999999999999999999874

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=82.96  E-value=0.61  Score=36.51  Aligned_cols=48  Identities=17%  Similarity=0.223  Sum_probs=41.7

Q ss_pred             HHHHHHHHHHHHhhCCCcCchHHHHHHHHhcc----------CCcHHHHHHHHHHHHH
Q 015869          336 LEKAEELLLRCIEKNPFVGEPHVVLGQIYLAK----------GEFEEAEREAGKGLML  383 (399)
Q Consensus       336 ~d~a~~lL~~~i~~NP~VgEP~~vLAQ~~l~~----------gr~~eA~~~A~~gL~l  383 (399)
                      .+.|...++++++.||=..+-+.-++.+|+..          +++++|...-+++|++
T Consensus        13 fe~A~~~~e~al~~~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l   70 (145)
T d1zu2a1          13 FEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLI   70 (145)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhCCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHh
Confidence            78899999999999999999999999999854          5557788888888765

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=82.50  E-value=1.2  Score=34.37  Aligned_cols=52  Identities=21%  Similarity=0.215  Sum_probs=43.8

Q ss_pred             hHHHHHHHHHHHHhhCCCcCch------------HHHHHHHHhccCCcHHHHHHHHHHHHHHHh
Q 015869          335 KLEKAEELLLRCIEKNPFVGEP------------HVVLGQIYLAKGEFEEAEREAGKGLMLLLE  386 (399)
Q Consensus       335 ~~d~a~~lL~~~i~~NP~VgEP------------~~vLAQ~~l~~gr~~eA~~~A~~gL~ll~~  386 (399)
                      ..+.|.+...++|+.+|=.++.            +.-+|-+|...|+|++|.....++|++.-.
T Consensus        24 ~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~   87 (156)
T d2hr2a1          24 EYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNR   87 (156)
T ss_dssp             CHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccc
Confidence            3788999999999998877652            334788999999999999999999998654

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=81.43  E-value=0.43  Score=40.54  Aligned_cols=49  Identities=8%  Similarity=-0.184  Sum_probs=44.9

Q ss_pred             hHHHHHHHHHHHHhhCCCcCchHHHHHHHHhccCCcHHHHHHHHHHHHH
Q 015869          335 KLEKAEELLLRCIEKNPFVGEPHVVLGQIYLAKGEFEEAEREAGKGLML  383 (399)
Q Consensus       335 ~~d~a~~lL~~~i~~NP~VgEP~~vLAQ~~l~~gr~~eA~~~A~~gL~l  383 (399)
                      ..+.|...+.+++..||..-+.+.-||.+|.+.|++++|...-.+++++
T Consensus       257 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~l  305 (334)
T d1dcea1         257 SELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAV  305 (334)
T ss_dssp             HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence            3667888999999999999999999999999999999999999888875

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=81.42  E-value=1.3  Score=35.96  Aligned_cols=61  Identities=15%  Similarity=0.052  Sum_probs=49.6

Q ss_pred             HHHHhhccCCCCCchhHHHHHHHHHHHHhhCCCc-CchHHHHHHHHhccCCcHHHHHHHHHHHHH
Q 015869          320 LYWEAVCGNSDGSKEKLEKAEELLLRCIEKNPFV-GEPHVVLGQIYLAKGEFEEAEREAGKGLML  383 (399)
Q Consensus       320 lYWeav~~~~~~~~~~~d~a~~lL~~~i~~NP~V-gEP~~vLAQ~~l~~gr~~eA~~~A~~gL~l  383 (399)
                      .=|--|.  | ....+.+++..+|++++..||-- -+=.--||-.|.+.|+|++|.+..+.+|+.
T Consensus        41 YAw~Lv~--S-~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~i  102 (124)
T d2pqrb1          41 YAWGLIK--S-TDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH  102 (124)
T ss_dssp             HHHHHHH--S-SCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHc--C-CcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcc
Confidence            3477777  4 35566899999999999999853 244478999999999999999999988864