Citrus Sinensis ID: 015873

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------40
MDLLDKMETFLFTSESVNEGHPDKLCDQISDAVLDACLEQDPESKVACETCTKTNMVMVFGEITTKAKVDYEKIVRDTCRSIGFVSDDVGLDADHCKVLVNIEQQSPDIAQGVHGHFTKRPEDIGAGDQGHMFGYATDETSEFMPLSHVLATKLGARLTEVRKNSTCSWLRPDGKTQVTVEYYNDNGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDPTKVDRSGAYIVRQAAKSIVANGLARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKWEKPQA
ccHHHHcccccEEcccccccccccccHHHHHHHHHHHHHHcccccEEEEEEccccEEEEEEEEcccEEEcHHHHHHHHHcccccccccccccccccEEEEccccccHHHHcccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHcccccccccccccccEEEEEEEccccccccEEEEEEEEcccccccccHHHHHHHHHHccccccccccccccccEEEEcccccEEEccccccccccccEEEEEcccccccccccccccccccccHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHcccccEEEEEEccccccccHHHHHHHHHHHccccHHHHHHHcccccccccccHHcccccccccccccccccccccccHHcccc
ccHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHcccccEEEEEEEEcccEEEEEEEEEcccEEcHHHHHHHHHHHHcccccccccccccHHHHHHHHcccHHHHHHHHHHHHHcHHHccccccccEEEEcccccHcHcccHHHHHHHHHHHHHHHHHcccccccccccccEEEEEEEcccccEEEEEEEEEEEEccccccccHHHHHHHHHHHHccccccHHHHccccEEEEcccccEEEccccccccccccEEEEEccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHcEEEEEEEEcccccEEEEEEccccccccHHHHHHHHHHHccccHHHHHHHHcHcccccccHHHHEHccccccccccccccccHHHHHHHHcc
MDLLDKMETFLftsesvneghpdklcDQISDAVLDAcleqdpeskvacetctktnMVMVFGEITTKAKVDYEKIVRDTCRsigfvsddvgldadhCKVLVNIeqqspdiaqgvhghftkrpedigagdqghmfgyatdetsefmplSHVLATKLGARLTEvrknstcswlrpdgktqVTVEYYNDNGAMVPVRVHTVLIStqhdetvtndEIAADLkehvikpvipekyldektifhlnpsgrfviggphgdagltgRKIIIDtyggwgahgggafsgkdptkvdrsgaYIVRQAAKSIVANGLARRCIVQVSYaigvpeplsvfvdsygtgkipdkEILKIVKESfdfrpgmmtinldlkrggngrflktaayghfgrddpdftwevvkplkwekpqa
MDLLDKMETFLFTsesvneghpdKLCDQISDAVLDACLEQDPEskvacetctktnmvMVFGEITTKAKVDYEKIVRDTCRSIGFVSDDVGLDADHCKVLVNIEQQSPDIAQGVHGHFTKRPEDIGAGDQGHMFGYATDETSEFMPLSHVLATKLGARLTevrknstcswlrpdgktQVTVEYYNDNGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDPTKVDRSGAYIVRQAAKSIVANGLARRCIVQVSYAIGVPEPLSVFVDSYgtgkipdkeILKIVKESFDFRPGMMTInldlkrggngRFLKTAAYghfgrddpdfTWEVVKPlkwekpqa
MDLLDKMETFLFTSESVNEGHPDKLCDQISDAVLDACLEQDPESKVACETCTKTNMVMVFGEITTKAKVDYEKIVRDTCRSIGFVSDDVGLDADHCKVLVNIEQQSPDIAQGVHGHFTKRPEDIGAGDQGHMFGYATDETSEFMPLSHVLATKLGARLTEVRKNSTCSWLRPDGKTQVTVEYYNDNGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYggwgahgggafsgKDPTKVDRSGAYIVRQAAKSIVANGLARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKWEKPQA
***********************KLCDQISDAVLDACLEQDPESKVACETCTKTNMVMVFGEITTKAKVDYEKIVRDTCRSIGFVSDDVGLDADHCKVLVNIEQQSPDIAQGVHGHFTK****IGAGDQGHMFGYATDETSEFMPLSHVLATKLGARLTEVRKNSTCSWLRPDGKTQVTVEYYNDNGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDPTKVDRSGAYIVRQAAKSIVANGLARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKW*****
***********FTSESVNEGHPDKLCDQISDAVLDACLEQDPESKVACETCTKTNMVMVFGEITTKAKVDYEKIVRDTCRSIGFVSDDVGLDADHCKVLVNIEQQSPDIAQGVHGHFTKRPEDIGAGDQGHMFGYATDETSEFMPLSHVLATKLGARLTEVRKNSTCSWLRPDGKTQVTVEYYNDNGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDPTKVDRSGAYIVRQAAKSIVANGLARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKWEKP**
MDLLDKMETFLFTSESVNEGHPDKLCDQISDAVLDACLEQDPESKVACETCTKTNMVMVFGEITTKAKVDYEKIVRDTCRSIGFVSDDVGLDADHCKVLVNIEQQSPDIAQGVHGHFTKRPEDIGAGDQGHMFGYATDETSEFMPLSHVLATKLGARLTEVRKNSTCSWLRPDGKTQVTVEYYNDNGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDPTKVDRSGAYIVRQAAKSIVANGLARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKWEKPQA
****************VNEGHPDKLCDQISDAVLDACLEQDPESKVACETCTKTNMVMVFGEITTKAKVDYEKIVRDTCRSIGFVSDDVGLDADHCKVLVNIEQQSPDIAQGVHGHFTKRPEDIGAGDQGHMFGYATDETSEFMPLSHVLATKLGARLTEVRKNSTCSWLRPDGKTQVTVEYYNDNGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDPTKVDRSGAYIVRQAAKSIVANGLARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKWEKPQ*
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MDLLDKMETFLFTSESVNEGHPDKLCDQISDAVLDACLEQDPESKVACETCTKTNMVMVFGEITTKAKVDYEKIVRDTCRSIGFVSDDVGLDADHCKVLVNIEQQSPDIAQGVHGHFTKRPEDIGAGDQGHMFGYATDETSEFMPLSHVLATKLGARLTEVRKNSTCSWLRPDGKTQVTVEYYNDNGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDPTKVDRSGAYIVRQAAKSIVANGLARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKWEKPQA
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query399 2.2.26 [Sep-21-2011]
A9P822392 S-adenosylmethionine synt yes no 0.982 1.0 0.964 0.0
Q9AT56393 S-adenosylmethionine synt N/A no 0.984 1.0 0.949 0.0
Q5DNB1393 S-adenosylmethionine synt N/A no 0.984 1.0 0.949 0.0
Q94FA4393 S-adenosylmethionine synt N/A no 0.984 1.0 0.949 0.0
A4PU48394 S-adenosylmethionine synt N/A no 0.982 0.994 0.941 0.0
Q9AT55393 S-adenosylmethionine synt N/A no 0.984 1.0 0.949 0.0
Q96551393 S-adenosylmethionine synt N/A no 0.977 0.992 0.956 0.0
P17562393 S-adenosylmethionine synt yes no 0.984 1.0 0.944 0.0
A7Q0V4391 S-adenosylmethionine synt yes no 0.977 0.997 0.956 0.0
Q94FA6393 S-adenosylmethionine synt N/A no 0.984 1.0 0.944 0.0
>sp|A9P822|METK1_POPTR S-adenosylmethionine synthase 1 OS=Populus trichocarpa GN=METK1 PE=2 SV=1 Back     alignment and function desciption
 Score =  761 bits (1965), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 379/393 (96%), Positives = 387/393 (98%), Gaps = 1/393 (0%)

Query: 7   METFLFTSESVNEGHPDKLCDQISDAVLDACLEQDPESKVACETCTKTNMVMVFGEITTK 66
           METFLFTSESVNEGHPDKLCDQISDAVLDACLEQDP+SKVACETCTKTNMVMVFGEITTK
Sbjct: 1   METFLFTSESVNEGHPDKLCDQISDAVLDACLEQDPDSKVACETCTKTNMVMVFGEITTK 60

Query: 67  AKVDYEKIVRDTCRSIGFVSDDVGLDADHCKVLVNIEQQSPDIAQGVHGHFTKRPEDIGA 126
            K+DYEKIVRDTCR+IGF+SDDVGLDAD CKVLVNIEQQSPDIAQGVHGHFTKRPE+IGA
Sbjct: 61  GKIDYEKIVRDTCRNIGFISDDVGLDADKCKVLVNIEQQSPDIAQGVHGHFTKRPEEIGA 120

Query: 127 GDQGHMFGYATDETSEFMPLSHVLATKLGARLTEVRKNSTCSWLRPDGKTQVTVEYYNDN 186
           GDQGHMFGYATDET E+MPLSHVLATKLGARLTEVRKN TC WLRPDGKTQVTVEYYNDN
Sbjct: 121 GDQGHMFGYATDETPEYMPLSHVLATKLGARLTEVRKNGTCPWLRPDGKTQVTVEYYNDN 180

Query: 187 GAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIFHLNPSGRFVI 246
           GAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIFHLNPSGRFVI
Sbjct: 181 GAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIFHLNPSGRFVI 240

Query: 247 GGPHGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDPTKVDRSGAYIVRQAAKSIVANGLAR 306
           GGPHGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDPTKVDRSGAYIVRQAAKSIVANGLAR
Sbjct: 241 GGPHGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDPTKVDRSGAYIVRQAAKSIVANGLAR 300

Query: 307 RCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNG 366
           RCIVQVSYAIGVPEPLSVFVD+YGTGKIPDKEILKIVKE+FDFRPGMMTINLDLKRGGN 
Sbjct: 301 RCIVQVSYAIGVPEPLSVFVDTYGTGKIPDKEILKIVKENFDFRPGMMTINLDLKRGGN- 359

Query: 367 RFLKTAAYGHFGRDDPDFTWEVVKPLKWEKPQA 399
           RFLKTAAYGHFGRDDPDFTWEVVKPLKWEKPQA
Sbjct: 360 RFLKTAAYGHFGRDDPDFTWEVVKPLKWEKPQA 392
Catalyzes the formation of S-adenosylmethionine from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme.
Populus trichocarpa (taxid: 3694)
EC: 2EC: .EC: 5EC: .EC: 1EC: .EC: 6
>sp|Q9AT56|METK1_ELAUM S-adenosylmethionine synthase 1 OS=Elaeagnus umbellata GN=SAMS1 PE=2 SV=1 Back     alignment and function description
>sp|Q5DNB1|METK_BRARP S-adenosylmethionine synthase OS=Brassica rapa subsp. pekinensis GN=SAMS PE=2 SV=1 Back     alignment and function description
>sp|Q94FA4|METK5_BRAJU S-adenosylmethionine synthase 5 OS=Brassica juncea GN=MSAMS5 PE=2 SV=1 Back     alignment and function description
>sp|A4PU48|METK_MEDTR S-adenosylmethionine synthase OS=Medicago truncatula GN=METK PE=3 SV=1 Back     alignment and function description
>sp|Q9AT55|METK2_ELAUM S-adenosylmethionine synthase 2 OS=Elaeagnus umbellata GN=SAMS2 PE=2 SV=1 Back     alignment and function description
>sp|Q96551|METK1_CATRO S-adenosylmethionine synthase 1 OS=Catharanthus roseus GN=SAMS1 PE=1 SV=1 Back     alignment and function description
>sp|P17562|METK2_ARATH S-adenosylmethionine synthase 2 OS=Arabidopsis thaliana GN=SAM2 PE=1 SV=1 Back     alignment and function description
>sp|A7Q0V4|METK5_VITVI S-adenosylmethionine synthase 5 OS=Vitis vinifera GN=METK5 PE=3 SV=1 Back     alignment and function description
>sp|Q94FA6|METK3_BRAJU S-adenosylmethionine synthase 3 OS=Brassica juncea GN=MSAMS3 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query399
255548295393 s-adenosylmethionine synthetase, putativ 0.984 1.0 0.974 0.0
255543014403 s-adenosylmethionine synthetase, putativ 0.984 0.975 0.959 0.0
224130888392 s-adenosylmethionine synthetase 4 [Popul 0.982 1.0 0.964 0.0
224064730392 s-adenosylmethionine synthetase 5 [Popul 0.982 1.0 0.964 0.0
75308026393 RecName: Full=S-adenosylmethionine synth 0.984 1.0 0.949 0.0
374095594394 S-adenosylmethionine synthetase [Cajanus 0.972 0.984 0.940 0.0
145049666393 S-adenosyl-L-methionine synthetase [Ipom 0.984 1.0 0.949 0.0
75284101393 RecName: Full=S-adenosylmethionine synth 0.984 1.0 0.949 0.0
357511493394 S-adenosylmethionine synthetase [Medicag 0.982 0.994 0.941 0.0
307948774393 S-adenosylmethionine synthetase [Gossypi 0.984 1.0 0.951 0.0
>gi|255548295|ref|XP_002515204.1| s-adenosylmethionine synthetase, putative [Ricinus communis] gi|223545684|gb|EEF47188.1| s-adenosylmethionine synthetase, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  768 bits (1983), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 383/393 (97%), Positives = 387/393 (98%)

Query: 7   METFLFTSESVNEGHPDKLCDQISDAVLDACLEQDPESKVACETCTKTNMVMVFGEITTK 66
           METFLFTSESVNEGHPDKLCDQISDAVLDACLEQDP+SKVACETCTKTNMVMVFGEITTK
Sbjct: 1   METFLFTSESVNEGHPDKLCDQISDAVLDACLEQDPDSKVACETCTKTNMVMVFGEITTK 60

Query: 67  AKVDYEKIVRDTCRSIGFVSDDVGLDADHCKVLVNIEQQSPDIAQGVHGHFTKRPEDIGA 126
           AKVDYEKIVRDTCR+IGFVSDDVGLDAD CKVLVNIEQQSPDIAQGVHGHFTKRPE+IGA
Sbjct: 61  AKVDYEKIVRDTCRNIGFVSDDVGLDADKCKVLVNIEQQSPDIAQGVHGHFTKRPEEIGA 120

Query: 127 GDQGHMFGYATDETSEFMPLSHVLATKLGARLTEVRKNSTCSWLRPDGKTQVTVEYYNDN 186
           GDQGHMFGYATDET EFMPLSHVLATKLGARLTEVRKN TC WLRPDGKTQVTVEYYNDN
Sbjct: 121 GDQGHMFGYATDETPEFMPLSHVLATKLGARLTEVRKNGTCPWLRPDGKTQVTVEYYNDN 180

Query: 187 GAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIFHLNPSGRFVI 246
           GAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIFHLNPSGRFVI
Sbjct: 181 GAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIFHLNPSGRFVI 240

Query: 247 GGPHGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDPTKVDRSGAYIVRQAAKSIVANGLAR 306
           GGPHGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDPTKVDRSGAYIVRQAAKSIVANGLAR
Sbjct: 241 GGPHGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDPTKVDRSGAYIVRQAAKSIVANGLAR 300

Query: 307 RCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNG 366
           RCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKE+FDFRPGMMTINLDLKRGGN 
Sbjct: 301 RCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKENFDFRPGMMTINLDLKRGGNS 360

Query: 367 RFLKTAAYGHFGRDDPDFTWEVVKPLKWEKPQA 399
           RFLKTAAYGHFGRDDPDFTWEVVKPLKWEK QA
Sbjct: 361 RFLKTAAYGHFGRDDPDFTWEVVKPLKWEKDQA 393

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255543014|ref|XP_002512570.1| s-adenosylmethionine synthetase, putative [Ricinus communis] gi|223548531|gb|EEF50022.1| s-adenosylmethionine synthetase, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|224130888|ref|XP_002320949.1| s-adenosylmethionine synthetase 4 [Populus trichocarpa] gi|223635313|sp|A9P822.1|METK1_POPTR RecName: Full=S-adenosylmethionine synthase 1; Short=AdoMet synthase 1; AltName: Full=Methionine adenosyltransferase 1; Short=MAT 1 gi|118481145|gb|ABK92525.1| unknown [Populus trichocarpa] gi|222861722|gb|EEE99264.1| s-adenosylmethionine synthetase 4 [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224064730|ref|XP_002301543.1| s-adenosylmethionine synthetase 5 [Populus trichocarpa] gi|222843269|gb|EEE80816.1| s-adenosylmethionine synthetase 5 [Populus trichocarpa] Back     alignment and taxonomy information
>gi|75308026|sp|Q9AT56.1|METK1_ELAUM RecName: Full=S-adenosylmethionine synthase 1; Short=AdoMet synthase 1; AltName: Full=Methionine adenosyltransferase 1; Short=MAT 1 gi|13540316|gb|AAK29409.1|AF346305_1 S-adenosyl-L-methionine synthetase [Elaeagnus umbellata] Back     alignment and taxonomy information
>gi|374095594|gb|AEY85025.1| S-adenosylmethionine synthetase [Cajanus cajan] Back     alignment and taxonomy information
>gi|145049666|gb|ABP35525.1| S-adenosyl-L-methionine synthetase [Ipomoea batatas] Back     alignment and taxonomy information
>gi|75284101|sp|Q5DNB1.1|METK_BRARP RecName: Full=S-adenosylmethionine synthase; Short=AdoMet synthase; AltName: Full=Methionine adenosyltransferase; Short=MAT gi|75306462|sp|Q94FA4.1|METK5_BRAJU RecName: Full=S-adenosylmethionine synthase 5; Short=AdoMet synthase 5; AltName: Full=Methionine adenosyltransferase 5; Short=MAT 5 gi|14600072|gb|AAK71235.1| S-adenosylmethionine synthetase [Brassica juncea] gi|56130947|gb|AAV80205.1| S-adenosyl-L-methionine synthetase [Brassica rapa subsp. pekinensis] Back     alignment and taxonomy information
>gi|357511493|ref|XP_003626035.1| S-adenosylmethionine synthetase [Medicago truncatula] gi|223635320|sp|A4PU48.1|METK_MEDTR RecName: Full=S-adenosylmethionine synthase; Short=AdoMet synthase; AltName: Full=Methionine adenosyltransferase; Short=MAT gi|140055593|gb|ABO80948.1| S-adenosylmethionine synthetase [Medicago truncatula] gi|355501050|gb|AES82253.1| S-adenosylmethionine synthetase [Medicago truncatula] Back     alignment and taxonomy information
>gi|307948774|gb|ADN96174.1| S-adenosylmethionine synthetase [Gossypium hirsutum] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query399
TAIR|locus:2141385393 SAM-2 "S-adenosylmethionine sy 0.984 1.0 0.910 2.9e-197
TAIR|locus:2196160393 SAM1 "S-adenosylmethionine syn 0.984 1.0 0.913 4.3e-196
TAIR|locus:2089070393 MTO3 "METHIONINE OVER-ACCUMULA 0.984 1.0 0.888 2e-189
TAIR|locus:2058011390 MAT3 "methionine adenosyltrans 0.969 0.992 0.873 9.4e-185
DICTYBASE|DDB_G0291179384 metK "S-adenosylmethionine syn 0.957 0.994 0.654 1.5e-131
UNIPROTKB|A7E3T7395 MAT2A "S-adenosylmethionine sy 0.949 0.959 0.619 3.5e-123
UNIPROTKB|D0G777395 MATA2 "S-adenosylmethionine sy 0.949 0.959 0.619 3.5e-123
UNIPROTKB|E2R431395 MAT2A "Uncharacterized protein 0.949 0.959 0.616 1.2e-122
UNIPROTKB|P31153395 MAT2A "S-adenosylmethionine sy 0.949 0.959 0.616 1.2e-122
MGI|MGI:2443731395 Mat2a "methionine adenosyltran 0.949 0.959 0.613 1.5e-122
TAIR|locus:2141385 SAM-2 "S-adenosylmethionine synthetase 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1910 (677.4 bits), Expect = 2.9e-197, P = 2.9e-197
 Identities = 358/393 (91%), Positives = 370/393 (94%)

Query:     7 METFLFTSESVNEGHPDKLCDQISDAVLDACLEQDPESKVACETCTKTNMVMVFGEITTK 66
             METFLFTSESVNEGHPDKLCDQISDAVLDACLEQDP+SKVACETCTKTNMVMVFGEITTK
Sbjct:     1 METFLFTSESVNEGHPDKLCDQISDAVLDACLEQDPDSKVACETCTKTNMVMVFGEITTK 60

Query:    67 AKVDYEKIVRDTCRSIGFVSDDVGLDADHCKVLVNIEQQSPDIAQGVHGHFTKRPEDIGA 126
             A +DYEKIVRDTCRSIGF+SDDVGLDAD CKVLVNIEQQSPDIAQGVHGHFTKRPEDIGA
Sbjct:    61 ATIDYEKIVRDTCRSIGFISDDVGLDADKCKVLVNIEQQSPDIAQGVHGHFTKRPEDIGA 120

Query:   127 GDQGHMFGYATDETSEFMPLSHVLATKLGARLTEVRKNSTCSWLRPDGKTQVTVEYYNDN 186
             GDQGHMFGYATDET E MPLSHVLATK+GARLTEVRKN TC WLRPDGKTQVTVEYYNDN
Sbjct:   121 GDQGHMFGYATDETPELMPLSHVLATKIGARLTEVRKNGTCRWLRPDGKTQVTVEYYNDN 180

Query:   187 GAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIFHLNPSGRFVI 246
             GAMVPVRVHTVLISTQHDETVTNDEIA DLKEHVIKP+IPEKYLD+KTIFHLNPSGRFVI
Sbjct:   181 GAMVPVRVHTVLISTQHDETVTNDEIARDLKEHVIKPIIPEKYLDDKTIFHLNPSGRFVI 240

Query:   247 GGPHGDAGLTGRKIIIDTYXXXXXXXXXXXXXKDPTKVDRSGAYIVRQAAKSIVANGLAR 306
             GGPHGDAGLTGRKIIIDTY             KDPTKVDRSGAYIVRQAAKS+VANG+AR
Sbjct:   241 GGPHGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDPTKVDRSGAYIVRQAAKSVVANGMAR 300

Query:   307 RCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNG 366
             R +VQVSYAIGVPEPLSVFVD+YGTG IPDKEILKIVKE+FDFRPGMMTINLDLKRGGNG
Sbjct:   301 RALVQVSYAIGVPEPLSVFVDTYGTGLIPDKEILKIVKETFDFRPGMMTINLDLKRGGNG 360

Query:   367 RFLKTAAYGHFGRDDPDFTWEVVKPLKWEKPQA 399
             RF KTAAYGHFGRDDPDFTWEVVKPLKW+KPQA
Sbjct:   361 RFQKTAAYGHFGRDDPDFTWEVVKPLKWDKPQA 393
GO:0004478 "methionine adenosyltransferase activity" evidence=IEA;ISS
GO:0005524 "ATP binding" evidence=IEA
GO:0005737 "cytoplasm" evidence=ISM
GO:0006556 "S-adenosylmethionine biosynthetic process" evidence=IEA;ISS
GO:0005730 "nucleolus" evidence=IDA
GO:0005618 "cell wall" evidence=IDA
GO:0005507 "copper ion binding" evidence=IDA
GO:0071281 "cellular response to iron ion" evidence=IEP
GO:0005829 "cytosol" evidence=IDA;RCA
GO:0070062 "extracellular vesicular exosome" evidence=IDA
GO:0009506 "plasmodesma" evidence=IDA
GO:0006970 "response to osmotic stress" evidence=RCA
GO:0046686 "response to cadmium ion" evidence=RCA
TAIR|locus:2196160 SAM1 "S-adenosylmethionine synthetase 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2089070 MTO3 "METHIONINE OVER-ACCUMULATOR 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2058011 MAT3 "methionine adenosyltransferase 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0291179 metK "S-adenosylmethionine synthetase" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
UNIPROTKB|A7E3T7 MAT2A "S-adenosylmethionine synthase" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|D0G777 MATA2 "S-adenosylmethionine synthase" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|E2R431 MAT2A "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|P31153 MAT2A "S-adenosylmethionine synthase isoform type-2" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
MGI|MGI:2443731 Mat2a "methionine adenosyltransferase II, alpha" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q96551METK1_CATRO2, ., 5, ., 1, ., 60.95640.97740.9923N/Ano
Q96552METK2_CATRO2, ., 5, ., 1, ., 60.94400.98491.0N/Ano
Q9LUT2METK4_ARATH2, ., 5, ., 1, ., 60.92110.98491.0nono
A9PHE9METK5_POPTR2, ., 5, ., 1, ., 60.94070.97240.9822nono
P43281METK2_SOLLC2, ., 5, ., 1, ., 60.93380.98491.0N/Ano
Q8GTL5METK_CARPA2, ., 5, ., 1, ., 60.96100.96490.8974N/Ano
A7Q0V4METK5_VITVI2, ., 5, ., 1, ., 60.95640.97740.9974yesno
Q4LB21METK4_HORVU2, ., 5, ., 1, ., 60.92170.99241.0N/Ano
Q56TU3METK2_DAUCA2, ., 5, ., 1, ., 60.93120.98491.0N/Ano
A9PDZ7METK2_POPTR2, ., 5, ., 1, ., 60.93870.98240.9974nono
A7NVX9METK2_VITVI2, ., 5, ., 1, ., 60.94650.98491.0yesno
A9PEK8METK3_POPTR2, ., 5, ., 1, ., 60.94580.97240.9822yesno
Q6F3F0METK3_ATRNU2, ., 5, ., 1, ., 60.92110.98240.9898N/Ano
Q9LGU6METK3_ORYSJ2, ., 5, ., 1, ., 60.91660.99241.0yesno
Q9LDQ7METK_CAMSI2, ., 5, ., 1, ., 60.94750.95480.9694N/Ano
Q84MM2METK_LITCN2, ., 5, ., 1, ., 60.93380.98491.0N/Ano
P49611METK1_BRAJU2, ., 5, ., 1, ., 60.93890.98491.0N/Ano
A7PRJ6METK4_VITVI2, ., 5, ., 1, ., 60.92600.98240.9974nono
P93254METK_MESCR2, ., 5, ., 1, ., 60.92090.97990.9974N/Ano
P43280METK1_SOLLC2, ., 5, ., 1, ., 60.94640.98240.9974N/Ano
P50300METK_PINBN2, ., 5, ., 1, ., 60.91600.98491.0N/Ano
P47916METK_POPDE2, ., 5, ., 1, ., 60.93810.97240.9822N/Ano
Q7XZR1METK1_ATRNU2, ., 5, ., 1, ., 60.91340.98240.9898N/Ano
A4PU48METK_MEDTR2, ., 5, ., 1, ., 60.94130.98240.9949N/Ano
A9NYY0METK2_PICSI2, ., 5, ., 1, ., 60.91340.98491.0N/Ano
Q9SBQ7METK3_PETHY2, ., 5, ., 1, ., 60.94130.98240.9974N/Ano
Q5DNB1METK_BRARP2, ., 5, ., 1, ., 60.94910.98491.0N/Ano
B0LXM0METK_WHEAT2, ., 5, ., 1, ., 60.92110.98490.9924N/Ano
A2Y053METK1_ORYSI2, ., 5, ., 1, ., 60.92110.98490.9924N/Ano
Q94FA4METK5_BRAJU2, ., 5, ., 1, ., 60.94910.98491.0N/Ano
Q94FA6METK3_BRAJU2, ., 5, ., 1, ., 60.94400.98491.0N/Ano
Q8W3Y4METK_PHALU2, ., 5, ., 1, ., 60.94850.97490.9923N/Ano
Q6F3F1METK4_ATRNU2, ., 5, ., 1, ., 60.91600.98240.9898N/Ano
Q9FUZ1METK2_BRAJU2, ., 5, ., 1, ., 60.93630.98491.0N/Ano
P17562METK2_ARATH2, ., 5, ., 1, ., 60.94400.98491.0yesno
Q9AT55METK2_ELAUM2, ., 5, ., 1, ., 60.94910.98491.0N/Ano
A6XMY9METK1_TRIMO2, ., 5, ., 1, ., 60.91830.97990.9923N/Ano
A4ULF8METK_MEDFA2, ., 5, ., 1, ., 60.93050.97490.9823N/Ano
P93438METK2_ORYSJ2, ., 5, ., 1, ., 60.93870.97990.9923nono
A7L2Z6METK_GOSHI2, ., 5, ., 1, ., 60.93120.98491.0N/Ano
Q0DKY4METK1_ORYSJ2, ., 5, ., 1, ., 60.92110.98490.9924nono
Q6GV10METK_SOLBR2, ., 5, ., 1, ., 60.93870.98240.9974N/Ano
A9P822METK1_POPTR2, ., 5, ., 1, ., 60.96430.98241.0yesno
Q4H1G3METK2_BETVU2, ., 5, ., 1, ., 60.95380.97740.9923N/Ano
Q4H1G4METK1_BETVU2, ., 5, ., 1, ., 60.91600.98240.9898N/Ano
Q944U4METK_DENCR2, ., 5, ., 1, ., 60.92420.98991.0N/Ano
P23686METK1_ARATH2, ., 5, ., 1, ., 60.94650.98491.0yesno
Q9AT56METK1_ELAUM2, ., 5, ., 1, ., 60.94910.98491.0N/Ano
Q307Y9METK1_SOLTU2, ., 5, ., 1, ., 60.94890.98240.9974N/Ano
Q9FPL6METK2_SUASA2, ., 5, ., 1, ., 60.92360.98490.9949N/Ano

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
4th Layer2.5.1.60.993
3rd Layer2.5.10.998

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
METK1
RecName- Full=S-adenosylmethionine synthetase; EC=2.5.1.6;; Catalyzes the formation of S-adenosylmethionine from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme (By similarity) (393 aa)
(Populus trichocarpa)
Predicted Functional Partners:
HMT2
homocysteine s-methyltransferase (EC-2.1.1.10) (338 aa)
     •• 0.926
HMT3
homocysteine s-methyltransferase (EC-2.1.1.10) (327 aa)
     •• 0.926
HMT1
homocysteine s-methyltransferase (EC-2.1.1.10) (332 aa)
     •• 0.926
HMT5
homocysteine s-methyltransferase (EC-2.1.1.10) (341 aa)
     •• 0.926
HMT4
homocysteine s-methyltransferase (EC-2.1.1.10) (330 aa)
     •• 0.926
MS1
SubName- Full=Putative uncharacterized protein; (766 aa)
   • •• 0.917
MS2
SubName- Full=Putative uncharacterized protein; (766 aa)
   • •• 0.917
MS3
SubName- Full=Putative uncharacterized protein; (766 aa)
   • •• 0.917
eugene3.00031777
methionine gamma-lyase (EC-4.4.1.11) (417 aa)
     •• 0.903
fgenesh4_pg.C_LG_III001784
methionine gamma-lyase (EC-4.4.1.11) (417 aa)
     •• 0.902

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query399
PLN02243386 PLN02243, PLN02243, S-adenosylmethionine synthase 0.0
PTZ00104398 PTZ00104, PTZ00104, S-adenosylmethionine synthase; 0.0
PRK05250384 PRK05250, PRK05250, S-adenosylmethionine synthetas 0.0
COG0192388 COG0192, MetK, S-adenosylmethionine synthetase [Co 0.0
TIGR01034377 TIGR01034, metK, S-adenosylmethionine synthetase 0.0
PRK12459386 PRK12459, PRK12459, S-adenosylmethionine synthetas 0.0
pfam02773138 pfam02773, S-AdoMet_synt_C, S-adenosylmethionine s 2e-84
pfam02772119 pfam02772, S-AdoMet_synt_M, S-adenosylmethionine s 1e-73
pfam00438100 pfam00438, S-AdoMet_synt_N, S-adenosylmethionine s 2e-62
>gnl|CDD|177886 PLN02243, PLN02243, S-adenosylmethionine synthase Back     alignment and domain information 
 Score =  845 bits (2185), Expect = 0.0
 Identities = 363/386 (94%), Positives = 373/386 (96%)

Query: 7   METFLFTSESVNEGHPDKLCDQISDAVLDACLEQDPESKVACETCTKTNMVMVFGEITTK 66
           METFLFTSESVNEGHPDKLCDQISDAVLDACL QDP+SKVACETCTKTNMVMVFGEITTK
Sbjct: 1   METFLFTSESVNEGHPDKLCDQISDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTK 60

Query: 67  AKVDYEKIVRDTCRSIGFVSDDVGLDADHCKVLVNIEQQSPDIAQGVHGHFTKRPEDIGA 126
           AKVDYEKIVRDTCR IGFVSDDVGLDAD CKVLVNIEQQSPDIAQGVHGH TK+PE+IGA
Sbjct: 61  AKVDYEKIVRDTCREIGFVSDDVGLDADKCKVLVNIEQQSPDIAQGVHGHLTKKPEEIGA 120

Query: 127 GDQGHMFGYATDETSEFMPLSHVLATKLGARLTEVRKNSTCSWLRPDGKTQVTVEYYNDN 186
           GDQGHMFGYATDET E MPL+HVLATKLGARLTEVRKN TC WLRPDGKTQVTVEY N+ 
Sbjct: 121 GDQGHMFGYATDETPELMPLTHVLATKLGARLTEVRKNGTCPWLRPDGKTQVTVEYKNEG 180

Query: 187 GAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIFHLNPSGRFVI 246
           GAMVP+RVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIFHLNPSGRFVI
Sbjct: 181 GAMVPIRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIFHLNPSGRFVI 240

Query: 247 GGPHGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDPTKVDRSGAYIVRQAAKSIVANGLAR 306
           GGPHGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDPTKVDRSGAYIVRQAAKS+VA GLAR
Sbjct: 241 GGPHGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDPTKVDRSGAYIVRQAAKSVVAAGLAR 300

Query: 307 RCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNG 366
           RCIVQVSYAIGVPEPLSVFVD+YGTGKIPDKEILKIVKE+FDFRPGM+ INLDLKRGGNG
Sbjct: 301 RCIVQVSYAIGVPEPLSVFVDTYGTGKIPDKEILKIVKENFDFRPGMIAINLDLKRGGNG 360

Query: 367 RFLKTAAYGHFGRDDPDFTWEVVKPL 392
           RF KTAAYGHFGRDDPDFTWEVVKPL
Sbjct: 361 RFQKTAAYGHFGRDDPDFTWEVVKPL 386

Length = 386
>gnl|CDD|240268 PTZ00104, PTZ00104, S-adenosylmethionine synthase; Provisional Back     alignment and domain information
>gnl|CDD|235374 PRK05250, PRK05250, S-adenosylmethionine synthetase; Validated Back     alignment and domain information
>gnl|CDD|223270 COG0192, MetK, S-adenosylmethionine synthetase [Coenzyme metabolism] Back     alignment and domain information
>gnl|CDD|233241 TIGR01034, metK, S-adenosylmethionine synthetase Back     alignment and domain information
>gnl|CDD|237106 PRK12459, PRK12459, S-adenosylmethionine synthetase; Provisional Back     alignment and domain information
>gnl|CDD|111646 pfam02773, S-AdoMet_synt_C, S-adenosylmethionine synthetase, C-terminal domain Back     alignment and domain information
>gnl|CDD|217221 pfam02772, S-AdoMet_synt_M, S-adenosylmethionine synthetase, central domain Back     alignment and domain information
>gnl|CDD|201226 pfam00438, S-AdoMet_synt_N, S-adenosylmethionine synthetase, N-terminal domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 399
COG0192388 MetK S-adenosylmethionine synthetase [Coenzyme met 100.0
PLN02243386 S-adenosylmethionine synthase 100.0
PTZ00104398 S-adenosylmethionine synthase; Provisional 100.0
PRK05250384 S-adenosylmethionine synthetase; Validated 100.0
PRK12459386 S-adenosylmethionine synthetase; Provisional 100.0
TIGR01034377 metK S-adenosylmethionine synthetase. Tandem isozy 100.0
KOG1506383 consensus S-adenosylmethionine synthetase [Coenzym 100.0
PF02773138 S-AdoMet_synt_C: S-adenosylmethionine synthetase, 100.0
PF02772120 S-AdoMet_synt_M: S-adenosylmethionine synthetase, 100.0
PF00438100 S-AdoMet_synt_N: S-adenosylmethionine synthetase, 100.0
PRK04439399 S-adenosylmethionine synthetase; Provisional 98.87
PF01941396 AdoMet_Synthase: S-adenosylmethionine synthetase ( 98.86
COG1812400 MetK Archaeal S-adenosylmethionine synthetase [Ami 98.05
>COG0192 MetK S-adenosylmethionine synthetase [Coenzyme metabolism] Back     alignment and domain information 
Probab=100.00  E-value=7.4e-190  Score=1386.43  Aligned_cols=381  Identities=60%  Similarity=0.986  Sum_probs=371.9

Q ss_pred             cceeEeecccCCCCChhhhhhhHHHHHHHHhhcCCCCeEEEEEEeeeCeEEEEEEeeeeeeccHHHHHHHHHHhhCCCCC
Q 015873            8 ETFLFTSESVNEGHPDKLCDQISDAVLDACLEQDPESKVACETCTKTNMVMVFGEITTKAKVDYEKIVRDTCRSIGFVSD   87 (399)
Q Consensus         8 ~~~lfTSESV~eGHPDKicDqISDaILDa~L~~Dp~arVA~E~~v~~~~v~i~GEitt~a~vd~~~ivR~~i~~IGY~~~   87 (399)
                      +.+|||||||+|||||||||||||||||+||+|||+|||||||+++||+|+|+|||+|+++||++++||++|++|||+++
T Consensus         3 ~~~lFTSESVseGHPDKi~DqISDaILD~~L~~Dp~srVAcEt~v~tg~v~i~GEitt~~~vd~~~~~r~~I~~IGY~~~   82 (388)
T COG0192           3 KYFLFTSESVSEGHPDKICDQISDAILDAILKQDPNSRVACETLVTTGLVVIAGEITTSAYVDIVNIARKTIKEIGYTES   82 (388)
T ss_pred             ccceeeeccccCCCChHHHHHHhHHHHHHHHhcCCCceEEEEEEEecCeEEEEEEEecCccccHHHHHHHHHHHhCCCcc
Confidence            45799999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCceEEEEeecCCChhhhcccCCCCCCCCCCCCCCcceeeEeeecCCCCCCCCchHHHHHHHHHHHHHHHHcCCC
Q 015873           88 DVGLDADHCKVLVNIEQQSPDIAQGVHGHFTKRPEDIGAGDQGHMFGYATDETSEFMPLSHVLATKLGARLTEVRKNSTC  167 (399)
Q Consensus        88 ~~gfd~~t~~v~~~i~~QS~dIa~gV~~~~~~~~~~~GAGDQGimfGYA~~ET~~~MPl~i~lAh~L~~rl~~~Rk~~~~  167 (399)
                      ++|||++||.|+++|++|||||+|||++..+ ..+++|||||||||||||||||+||||||+|||+|++||+++||+|.+
T Consensus        83 ~~Gfd~~t~~vl~~i~~QSpDIaqgVd~~~~-~~~~~GAGDQGimFGyA~~ET~~lMPlpI~lAH~l~~r~a~~Rk~g~l  161 (388)
T COG0192          83 DYGFDAKTCAVLVAIGEQSPDIAQGVDEADE-ELDEIGAGDQGIMFGYACNETPELMPLPISLAHRLLRRLAEVRKNGEL  161 (388)
T ss_pred             ccCcCccceEEEeecccCChhHHHhhhhccc-chhhcCCCcceeEeeeecCCcccccChHHHHHHHHHHHHHHHHhcCCC
Confidence            9999999999999999999999999997432 356799999999999999999999999999999999999999999999


Q ss_pred             CcccCCcceeEEEEEecCCCceeeeEEeEEEEeeecCCCCChHHHHHHHHHhhcccccCCCCCCCCcEEEEcCCCCeEEc
Q 015873          168 SWLRPDGKTQVTVEYYNDNGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIFHLNPSGRFVIG  247 (399)
Q Consensus       168 ~~l~PD~KsQVtv~Y~~~~g~~~p~rv~tiviS~QH~~~v~~~~l~~~i~e~Vi~~v~~~~~~~~~t~~~INPtG~FviG  247 (399)
                      ||||||+||||||+|++ ++  +|+||++||+||||++++++++||+.++|+||+|++|+++++++|+||||||||||||
T Consensus       162 ~~LrpD~KsQVtv~Y~~-~~--~p~~idtIvvStQH~~~i~~~~l~~~v~e~iI~pv~~~~~l~~~tk~~INPtGrFViG  238 (388)
T COG0192         162 PWLRPDAKSQVTVEYED-NG--KPVRIDTIVVSTQHDPDISQEQLREDVIEEIIKPVLPEELLDDKTKYFINPTGRFVIG  238 (388)
T ss_pred             cccCCCcceeEEEEEcC-CC--CceeEEEEEEEeccCcccCHHHHHHHHHHHHHhhhccHhhcCcCceEEECCCCCeeeC
Confidence            99999999999999986 35  8999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCcCCCCceEEEecCCCccccccccCcCCCCCccchhhhHHHHHHHHHHHhhccccccEEEEEEEeccccceeEEEE
Q 015873          248 GPHGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDPTKVDRSGAYIVRQAAKSIVANGLARRCIVQVSYAIGVPEPLSVFVD  327 (399)
Q Consensus       248 GP~~DtGLTGRKiiVDTYGG~a~HGGGAfSGKDptKVDRSaAY~AR~iAKniVaaGla~~ceVQlsYAIGva~Pvsi~V~  327 (399)
                      ||+||||||||||||||||||+||||||||||||||||||||||||||||||||||||+|||||||||||+|+|+||+||
T Consensus       239 GP~gD~GLTGRKIIVDTYGG~a~HGGGAFSGKDptKVDRSaAYaARyvAKNiVAAglA~~ceVQlsYAIGva~PvSi~Vd  318 (388)
T COG0192         239 GPQGDAGLTGRKIIVDTYGGYARHGGGAFSGKDPTKVDRSAAYAARYVAKNIVAAGLADRCEVQLSYAIGVAEPVSISVD  318 (388)
T ss_pred             CCCccccCccceEEEEcCCCccCCCCccCCCCCCcccchHHHHHHHHHHHHHHHhhhhhheEEEEEeEecccCceEEEEE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ecCCCCCChHHHHHHHHHhCCCChHhHhhhcccccccccccccccccccCCCCCCCCCccccccccccC
Q 015873          328 SYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKWEK  396 (399)
Q Consensus       328 tfgt~~~~~~~i~~~v~~~Fdl~p~~Ii~~L~L~~p~~~iY~~ta~yGHFGr~~~~fpWE~~d~~~~~~  396 (399)
                      ||||+++++++|.++|+++|||||++||++|+|++|   ||++||+||||||++ +|||||+|+++.|+
T Consensus       319 tfgT~kvse~~i~~~v~~~FdlrP~gIi~~LdL~~p---iY~~tAaYGHFGr~~-~~pWEk~dkv~~lk  383 (388)
T COG0192         319 TFGTGKVSEEKIEEAVRKVFDLRPAGIIKMLDLLRP---IYRKTAAYGHFGRED-DFPWEKLDKVDELK  383 (388)
T ss_pred             ccCCcccCHHHHHHHHHHhcCCCHHHHHHHhccCCc---cchhcccccccCCCC-CCCccchhhHHHHH
Confidence            999999999999999999999999999999999999   999999999999987 89999999998876

>PLN02243 S-adenosylmethionine synthase Back     alignment and domain information
>PTZ00104 S-adenosylmethionine synthase; Provisional Back     alignment and domain information
>PRK05250 S-adenosylmethionine synthetase; Validated Back     alignment and domain information
>PRK12459 S-adenosylmethionine synthetase; Provisional Back     alignment and domain information
>TIGR01034 metK S-adenosylmethionine synthetase Back     alignment and domain information
>KOG1506 consensus S-adenosylmethionine synthetase [Coenzyme transport and metabolism] Back     alignment and domain information
>PF02773 S-AdoMet_synt_C: S-adenosylmethionine synthetase, C-terminal domain; InterPro: IPR022630 The three domains of S-adenosylmethionine synthetase have the same alpha+beta fold Back     alignment and domain information
>PF02772 S-AdoMet_synt_M: S-adenosylmethionine synthetase, central domain; InterPro: IPR022629 The three domains of S-adenosylmethionine synthetase have the same alpha+beta fold Back     alignment and domain information
>PF00438 S-AdoMet_synt_N: S-adenosylmethionine synthetase, N-terminal domain; InterPro: IPR022628 The three domains of S-adenosylmethionine synthetase have the same alpha+beta fold Back     alignment and domain information
>PRK04439 S-adenosylmethionine synthetase; Provisional Back     alignment and domain information
>PF01941 AdoMet_Synthase: S-adenosylmethionine synthetase (AdoMet synthetase); InterPro: IPR002795 A highly diverged class of S-adenosylmethionine synthetases have been identified in the archaea Back     alignment and domain information
>COG1812 MetK Archaeal S-adenosylmethionine synthetase [Amino acid transport and metabolism] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query399
2p02_A396 Crystal Structure Of The Alpha Subunit Of Human S- 1e-134
2obv_A384 Crystal Structure Of The Human S-adenosylmethionine 1e-128
1qm4_A396 Methionine Adenosyltransferase Complexed With A L-M 1e-128
3so4_A415 Methionine-Adenosyltransferase From Entamoeba Histo 1e-122
1fug_A383 S-adenosylmethionine Synthetase Length = 383 1e-108
1xrb_A383 S-adenosylmethionine Synthetase (mat, Atp: L-methio 1e-105
3iml_A399 Crystal Structure Of S-Adenosylmethionine Synthetas 1e-103
3s82_A407 Structure Of A S-Adenosylmethionine Synthetase From 2e-97
3rv2_A407 Crystal Structure Of S-Adenosylmethionine Synthetas 8e-95
3tde_A408 Crystal Structure Of S-Adenosylmethionine Synthetas 3e-93
>pdb|2P02|A Chain A, Crystal Structure Of The Alpha Subunit Of Human S- Adenosylmethionine Synthetase 2 Length = 396 Back     alignment and structure 
Iteration: 1

 Score =  476 bits (1224), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 238/386 (61%), Positives = 286/386 (74%), Gaps = 7/386 (1%)
Query: 9   TFLFTSESVNEGHPDKLCDQISDAVLDACLEQDPESKVACETCTKTNMVMVFGEITTKAK 68
           TFLFTSESV EGHPDK+CDQISDAVLDA L+QDP++KVACET  KT M+++ GEIT++A 
Sbjct: 18  TFLFTSESVGEGHPDKICDQISDAVLDAHLQQDPDAKVACETVAKTGMILLAGEITSRAA 77
Query: 69  VDYEKIVRDTCRSIGFVSDDVGLDADHCKVLVNIEQQSPDIAQGVHGHFTKRPEDIGAGD 128
           VDY+K+VR+  + IG+     G D   C VLV +EQQSPDIAQGVH    +  EDIGAGD
Sbjct: 78  VDYQKVVREAVKHIGYDDSSKGFDYKTCNVLVALEQQSPDIAQGVH--LDRNEEDIGAGD 135
Query: 129 QGHMFGYATDETSEFMPLSHVLATKLGARLTEVRKNSTCSWLRPDGKTQVTVEYYNDNGA 188
           QG MFGYATDET E MPL+ VLA KL A+L E+R+N T  WLRPD KTQVTV+Y  D GA
Sbjct: 136 QGLMFGYATDETEECMPLTIVLAHKLNAKLAELRRNGTLPWLRPDSKTQVTVQYMQDRGA 195
Query: 189 MVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIFHLNPSGRFVIGG 248
           ++P+RVHT++IS QHDE V  DE+   LKE VIK V+P KYLDE TI+HL PSGRFVIGG
Sbjct: 196 VLPIRVHTIVISVQHDEEVCLDEMRDALKEKVIKAVVPAKYLDEDTIYHLQPSGRFVIGG 255
Query: 249 PHGDAGLTGRKIIIDTYXXXXXXXXXXXXXKDPTKVDRSGAYIVRQAAKSIVANGLARRC 308
           P GDAGLTGRKII+DTY             KD TKVDRS AY  R  AKS+V  GL RR 
Sbjct: 256 PQGDAGLTGRKIIVDTYGGWGAHGGGAFSGKDYTKVDRSAAYAARWVAKSLVKGGLCRRV 315
Query: 309 IVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRF 368
           +VQVSYAIGV  PLS+ +  YGT +  ++E+L+IVK++FD RPG++  +LDLK+     +
Sbjct: 316 LVQVSYAIGVSHPLSISIFHYGTSQKSERELLEIVKKNFDLRPGVIVRDLDLKK---PIY 372
Query: 369 LKTAAYGHFGRDDPDFTWEVVKPLKW 394
            +TAAYGHFGRD   F WEV K LK+
Sbjct: 373 QRTAAYGHFGRD--SFPWEVPKKLKY 396
>pdb|2OBV|A Chain A, Crystal Structure Of The Human S-adenosylmethionine Synthetase 1 In Complex With The Product Length = 384 Back     alignment and structure
>pdb|1QM4|A Chain A, Methionine Adenosyltransferase Complexed With A L-Methionine Analogous Length = 396 Back     alignment and structure
>pdb|3SO4|A Chain A, Methionine-Adenosyltransferase From Entamoeba Histolytica Length = 415 Back     alignment and structure
>pdb|1FUG|A Chain A, S-adenosylmethionine Synthetase Length = 383 Back     alignment and structure
>pdb|1XRB|A Chain A, S-adenosylmethionine Synthetase (mat, Atp: L-methionine S- Adenosyltransferase, E.c.2.5.1.6) In Which Met Residues Are Replaced With Selenomethionine Residues (mse) Length = 383 Back     alignment and structure
>pdb|3IML|A Chain A, Crystal Structure Of S-Adenosylmethionine Synthetase From Burkholderia Pseudomallei Length = 399 Back     alignment and structure
>pdb|3S82|A Chain A, Structure Of A S-Adenosylmethionine Synthetase From Mycobacterium Avium Length = 407 Back     alignment and structure
>pdb|3RV2|A Chain A, Crystal Structure Of S-Adenosylmethionine Synthetase From Mycobacterium Marinum Length = 407 Back     alignment and structure
>pdb|3TDE|A Chain A, Crystal Structure Of S-Adenosylmethionine Synthetase Rv1392 From Mycobacterium Tuberculosis Length = 408 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query399
3so4_A415 Methionine-adenosyltransferase; structural genomic 0.0
2p02_A396 S-adenosylmethionine synthetase isoform type-2; st 0.0
3iml_A399 S-adenosylmethionine synthetase; structural genomi 0.0
3s82_A407 S-adenosylmethionine synthase; seattle structural 0.0
1p7l_A383 S-adenosylmethionine synthetase; AMPPNP, SAM, tran 0.0
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-04
>3so4_A Methionine-adenosyltransferase; structural genomics, medical structural genomics of pathogen protozoa, MSGPP; 3.18A {Entamoeba histolytica} Length = 415 Back     alignment and structure
 Score =  748 bits (1935), Expect = 0.0
 Identities = 233/388 (60%), Positives = 284/388 (73%), Gaps = 5/388 (1%)

Query: 6   KMETFLFTSESVNEGHPDKLCDQISDAVLDACLEQDPESKVACETCTKTNMVMVFGEITT 65
               F FTSESV+ GHPDK+CDQISDA+LDACL QDP+S VACET TKT +++V GEITT
Sbjct: 19  PGSRFFFTSESVSGGHPDKMCDQISDAILDACLAQDPKSHVACETATKTGLILVLGEITT 78

Query: 66  KAKVDYEKIVRDTCRSIGFVSDDVGLDADHCKVLVNIEQQSPDIAQGVHGHFTKRPEDIG 125
            A +D  KIVR   +SIG+   + G D   C VL  +EQQS DIA+GVH    K+ EDIG
Sbjct: 79  NAVIDIPKIVRGVVKSIGYDDTNKGFDYQTCSVLSCVEQQSQDIAKGVHVE--KKEEDIG 136

Query: 126 AGDQGHMFGYATDETSEFMPLSHVLATKLGARLTEVRKNSTCSWLRPDGKTQVTVEYYND 185
           AGDQG MFGYATDE+ E MPL+HVL+TKL  RL E R+     WLRPD K+QVT+EY   
Sbjct: 137 AGDQGIMFGYATDESKEMMPLTHVLSTKLILRLQECREKGILPWLRPDSKSQVTLEYEEV 196

Query: 186 NGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIFHLNPSGRFV 245
            G + P+RVHT++ISTQH + V+N+EIA  L+E V + VIP++ +D+K + + NPSGRFV
Sbjct: 197 EGHLKPIRVHTIVISTQHADNVSNEEIAKGLEEEVTQKVIPKELMDDKMLRYYNPSGRFV 256

Query: 246 IGGPHGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDPTKVDRSGAYIVRQAAKSIVANGLA 305
           IGGP GDAGLTGRKII+DTYGGWGAHGGGAFSGKD +KVDRSGAY  R  AKS+V  GL 
Sbjct: 257 IGGPMGDAGLTGRKIIVDTYGGWGAHGGGAFSGKDSSKVDRSGAYCARWIAKSLVHAGLC 316

Query: 306 RRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGN 365
            R +VQ+SYAIGV  PLS+ V++YGTG   +  ++ IV ++FD RPGM+   L L R   
Sbjct: 317 HRVLVQLSYAIGVSHPLSINVNTYGTGICDESILVDIVNKNFDMRPGMIIKELGLTR--- 373

Query: 366 GRFLKTAAYGHFGRDDPDFTWEVVKPLK 393
             F KTA  GHFGR+DPDF WE  K L+
Sbjct: 374 PIFQKTAVGGHFGRNDPDFKWEFPKELE 401
>2p02_A S-adenosylmethionine synthetase isoform type-2; structural genomics, structural genomics consortium, SGC, transferase; HET: SAM; 1.21A {Homo sapiens} SCOP: d.130.1.1 d.130.1.1 d.130.1.1 PDB: 1qm4_A 1o92_A* 1o93_A* 1o90_A* 1o9t_A 2obv_A* Length = 396 Back     alignment and structure
>3iml_A S-adenosylmethionine synthetase; structural genomics, ATP-BI cobalt, magnesium, metal-binding, nucleotide-binding, one-C metabolism; 2.35A {Burkholderia pseudomallei} Length = 399 Back     alignment and structure
>3s82_A S-adenosylmethionine synthase; seattle structural genomics center for infectious disease, S adenosylmethionine synthetase, transferase; 1.73A {Mycobacterium avium} PDB: 3tde_A 3rv2_A Length = 407 Back     alignment and structure
>1p7l_A S-adenosylmethionine synthetase; AMPPNP, SAM, transferase; HET: SAM ANP PPK; 2.50A {Escherichia coli} SCOP: d.130.1.1 d.130.1.1 d.130.1.1 PDB: 1fug_A 1mxb_A* 1mxc_A* 1mxa_A* 1rg9_A* 1xra_A 1xrb_A 1xrc_A Length = 383 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query399
3so4_A415 Methionine-adenosyltransferase; structural genomic 100.0
3iml_A399 S-adenosylmethionine synthetase; structural genomi 100.0
3s82_A407 S-adenosylmethionine synthase; seattle structural 100.0
2p02_A396 S-adenosylmethionine synthetase isoform type-2; st 100.0
1p7l_A383 S-adenosylmethionine synthetase; AMPPNP, SAM, tran 100.0
4hpv_A407 S-adenosylmethionine synthase; structural genomics 98.32
>3so4_A Methionine-adenosyltransferase; structural genomics, medical structural genomics of pathogen protozoa, MSGPP; 3.18A {Entamoeba histolytica} Back     alignment and structure
Probab=100.00  E-value=2.5e-193  Score=1428.13  Aligned_cols=386  Identities=60%  Similarity=0.989  Sum_probs=365.9

Q ss_pred             ccccceeEeecccCCCCChhhhhhhHHHHHHHHhhcCCCCeEEEEEEeeeCeEEEEEEeeeeeeccHHHHHHHHHHhhCC
Q 015873            5 DKMETFLFTSESVNEGHPDKLCDQISDAVLDACLEQDPESKVACETCTKTNMVMVFGEITTKAKVDYEKIVRDTCRSIGF   84 (399)
Q Consensus         5 ~~~~~~lfTSESV~eGHPDKicDqISDaILDa~L~~Dp~arVA~E~~v~~~~v~i~GEitt~a~vd~~~ivR~~i~~IGY   84 (399)
                      -+|++||||||||+|||||||||||||||||+||+|||+|||||||++++|+|+|+|||||+++||+++|||++|++|||
T Consensus        18 ~~~~~~lFTSESVseGHPDKicDqISDAILDa~L~qDp~arVAcEt~vttg~V~v~GEItt~a~vD~~~ivR~~ik~IGY   97 (415)
T 3so4_A           18 GPGSRFFFTSESVSGGHPDKMCDQISDAILDACLAQDPKSHVACETATKTGLILVLGEITTNAVIDIPKIVRGVVKSIGY   97 (415)
T ss_dssp             ----CEEEEEEEECTTSHHHHHHHHHHHHHHHHHHHCTTCEEEEEEEECSSEEEEEEEEECSCCCCHHHHHHHHHHHHTC
T ss_pred             hcccceeEeeccccCCCChHHHhhHhHHHHHHHHhcCCCCcEEEEEEeecCeEEEEEEEecccccCHHHHHHHHHhccCC
Confidence            45567999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCCceEEEEeecCCChhhhcccCCCCCCCCCCCCCCcceeeEeeecCCCCCCCCchHHHHHHHHHHHHHHHHc
Q 015873           85 VSDDVGLDADHCKVLVNIEQQSPDIAQGVHGHFTKRPEDIGAGDQGHMFGYATDETSEFMPLSHVLATKLGARLTEVRKN  164 (399)
Q Consensus        85 ~~~~~gfd~~t~~v~~~i~~QS~dIa~gV~~~~~~~~~~~GAGDQGimfGYA~~ET~~~MPl~i~lAh~L~~rl~~~Rk~  164 (399)
                      +++++|||++||+|+++|++|||||+|||+.+  +..+++||||||||||||||||||||||||+|||+|++||+++||+
T Consensus        98 ~~~~~gFd~~tc~Vl~~i~~QSpDIaqGVd~~--~~~~~~GAGDQGiMFGYAtdET~elMPlpi~lAH~L~~rla~~Rk~  175 (415)
T 3so4_A           98 DDTNKGFDYQTCSVLSCVEQQSQDIAKGVHVE--KKEEDIGAGDQGIMFGYATDESKEMMPLTHVLSTKLILRLQECREK  175 (415)
T ss_dssp             EEGGGTEETTTCEEEEEEEEECCC-------------CCCCCSSCEEEEEEEETTSTTSSCHHHHHHHHHHHHHHHHHHH
T ss_pred             CCcccCccCCceEEEEecccCChhhhhccccc--cchhhcCCCcceeEEEEecCCCcccCCcHHHHHHHHHHHHHHHHHc
Confidence            99999999999999999999999999999963  2235799999999999999999999999999999999999999999


Q ss_pred             CCCCcccCCcceeEEEEEecCCCceeeeEEeEEEEeeecCCCCChHHHHHHHHHhhcccccCCCCCCCCcEEEEcCCCCe
Q 015873          165 STCSWLRPDGKTQVTVEYYNDNGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIFHLNPSGRF  244 (399)
Q Consensus       165 ~~~~~l~PD~KsQVtv~Y~~~~g~~~p~rv~tiviS~QH~~~v~~~~l~~~i~e~Vi~~v~~~~~~~~~t~~~INPtG~F  244 (399)
                      |++||||||+||||||+|++++|.++|+||+||||||||++++++++|+++|+|+||++|+|++|++++|+|||||||||
T Consensus       176 g~l~~LrPD~KtQVTveY~~~~g~~~P~rv~tvViStQH~~~v~~~~l~~~i~e~VI~~vip~~~ld~~t~~~INPtGrF  255 (415)
T 3so4_A          176 GILPWLRPDSKSQVTLEYEEVEGHLKPIRVHTIVISTQHADNVSNEEIAKGLEEEVTQKVIPKELMDDKMLRYYNPSGRF  255 (415)
T ss_dssp             SSSTTEEEEEEEEEEEEEEEETTEEEEEEEEEEEEEEEECTTSCHHHHHHHHHHHTHHHHSCTTTCCSSCEEEESTTCCC
T ss_pred             CCCCeeccCcceEEEEEEEcCCCCceeeEEEEEEEEEecCCCCCHHHHHHHHHHHHHHHhcCcccCCCCeEEEECCCCCe
Confidence            99999999999999999987667789999999999999999999999999999999999999999999999999999999


Q ss_pred             EEccCCCCcCCCCceEEEecCCCccccccccCcCCCCCccchhhhHHHHHHHHHHHhhccccccEEEEEEEeccccceeE
Q 015873          245 VIGGPHGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDPTKVDRSGAYIVRQAAKSIVANGLARRCIVQVSYAIGVPEPLSV  324 (399)
Q Consensus       245 viGGP~~DtGLTGRKiiVDTYGG~a~HGGGAfSGKDptKVDRSaAY~AR~iAKniVaaGla~~ceVQlsYAIGva~Pvsi  324 (399)
                      |||||+||+|||||||||||||||++|||||||||||||||||||||||||||||||||||+|||||||||||+++|+||
T Consensus       256 ViGGP~gDaGLTGRKIIVDTYGG~~~HGGGAFSGKDptKVDRSaAYaAR~vAKniVAAGLA~rc~VQlsYAIGva~PvSi  335 (415)
T 3so4_A          256 VIGGPMGDAGLTGRKIIVDTYGGWGAHGGGAFSGKDSSKVDRSGAYCARWIAKSLVHAGLCHRVLVQLSYAIGVSHPLSI  335 (415)
T ss_dssp             CSCTTTTSCEETTSCTTTTTTTTSSCCCSCCCTTBCTTSHHHHHHHHHHHHHHHHHHTTSCSEEEEEEEECTTCSSCSEE
T ss_pred             EECCCcccccccCceEEEEccCCcccCCCccccCCCccccccchhHHHHHHHHHHHHcCCcCeEEEEEEEeeccccceEE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEecCCCCCChHHHHHHHHHhCCCChHhHhhhcccccccccccccccccccCCCCCCCCCcccccccccc
Q 015873          325 FVDSYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKWE  395 (399)
Q Consensus       325 ~V~tfgt~~~~~~~i~~~v~~~Fdl~p~~Ii~~L~L~~p~~~iY~~ta~yGHFGr~~~~fpWE~~d~~~~~  395 (399)
                      +||||||+++++++|.++|+++|||||++||++|+|+||   ||++||+||||||++++||||++|+|++-
T Consensus       336 ~V~TfGT~~~~~~~i~~~v~~~FdlrP~~Ii~~L~L~~P---iY~~tAaYGHFGR~~~~f~WE~~d~l~~~  403 (415)
T 3so4_A          336 NVNTYGTGICDESILVDIVNKNFDMRPGMIIKELGLTRP---IFQKTAVGGHFGRNDPDFKWEFPKELEIP  403 (415)
T ss_dssp             EEEECSCCSSCHHHHHHHHHHHCCCCHHHHHHHHTTTSS---CCTGGGSSCSSSCCCTTCTTSSCCCCCCC
T ss_pred             EEEeCCCCcCCHHHHHHHHHHhcCCCHHHHHHHcCCCCC---cchhhcccccCCCCCCCCCCcCCcccCCC
Confidence            999999999999999999999999999999999999999   99999999999999989999999999864
>3iml_A S-adenosylmethionine synthetase; structural genomics, ATP-BI cobalt, magnesium, metal-binding, nucleotide-binding, one-C metabolism; 2.35A {Burkholderia pseudomallei} Back     alignment and structure
>3s82_A S-adenosylmethionine synthase; seattle structural genomics center for infectious disease, S adenosylmethionine synthetase, transferase; 1.73A {Mycobacterium avium} PDB: 3tde_A 3rv2_A Back     alignment and structure
>2p02_A S-adenosylmethionine synthetase isoform type-2; structural genomics, structural genomics consortium, SGC, transferase; HET: SAM; 1.21A {Homo sapiens} SCOP: d.130.1.1 d.130.1.1 d.130.1.1 PDB: 1qm4_A 1o92_A* 1o93_A* 1o90_A* 1o9t_A 2obv_A* Back     alignment and structure
>1p7l_A S-adenosylmethionine synthetase; AMPPNP, SAM, transferase; HET: SAM ANP PPK; 2.50A {Escherichia coli} SCOP: d.130.1.1 d.130.1.1 d.130.1.1 PDB: 1fug_A 1mxb_A* 1mxc_A* 1mxa_A* 1rg9_A* 1xra_A 1xrb_A 1xrc_A Back     alignment and structure
>4hpv_A S-adenosylmethionine synthase; structural genomics, PSI-biology; 2.21A {Sulfolobus solfataricus P2} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 399
d2p02a3144 d.130.1.1 (A:274-417) S-adenosylmethionine synthet 7e-68
d1mxaa3152 d.130.1.1 (A:232-383) S-adenosylmethionine synthet 8e-64
d2p02a2126 d.130.1.1 (A:148-273) S-adenosylmethionine synthet 7e-56
d1mxaa2124 d.130.1.1 (A:108-231) S-adenosylmethionine synthet 9e-54
d2p02a1110 d.130.1.1 (A:38-147) S-adenosylmethionine syntheta 7e-51
d1mxaa1102 d.130.1.1 (A:1-102) S-adenosylmethionine synthetas 6e-46
>d2p02a3 d.130.1.1 (A:274-417) S-adenosylmethionine synthetase {Human (Homo sapiens), isoform type-2 [TaxId: 9606]} Length = 144 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: S-adenosylmethionine synthetase
superfamily: S-adenosylmethionine synthetase
family: S-adenosylmethionine synthetase
domain: S-adenosylmethionine synthetase
species: Human (Homo sapiens), isoform type-2 [TaxId: 9606]

 Score =  209 bits (533), Expect = 7e-68
 Identities = 96/149 (64%), Positives = 115/149 (77%), Gaps = 5/149 (3%)

Query: 246 IGGPHGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDPTKVDRSGAYIVRQAAKSIVANGLA 305
           IGGP GDAGLTGRKII+DTYGGWGAHGGGAFSGKD TKVDRS AY  R  AKS+V  GL 
Sbjct: 1   IGGPQGDAGLTGRKIIVDTYGGWGAHGGGAFSGKDYTKVDRSAAYAARWVAKSLVKGGLC 60

Query: 306 RRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGN 365
           RR +VQVSYAIGV  PLS+ +  YGT +  ++E+L+IVK++FD RPG++  +LDLK+   
Sbjct: 61  RRVLVQVSYAIGVSHPLSISIFHYGTSQKSERELLEIVKKNFDLRPGVIVRDLDLKK--- 117

Query: 366 GRFLKTAAYGHFGRDDPDFTWEVVKPLKW 394
             + +TAAYGHFGRD   F WEV K LK+
Sbjct: 118 PIYQRTAAYGHFGRD--SFPWEVPKKLKY 144
>d1mxaa3 d.130.1.1 (A:232-383) S-adenosylmethionine synthetase {Escherichia coli [TaxId: 562]} Length = 152 Back     information, alignment and structure
>d2p02a2 d.130.1.1 (A:148-273) S-adenosylmethionine synthetase {Human (Homo sapiens), isoform type-2 [TaxId: 9606]} Length = 126 Back     information, alignment and structure
>d1mxaa2 d.130.1.1 (A:108-231) S-adenosylmethionine synthetase {Escherichia coli [TaxId: 562]} Length = 124 Back     information, alignment and structure
>d2p02a1 d.130.1.1 (A:38-147) S-adenosylmethionine synthetase {Human (Homo sapiens), isoform type-2 [TaxId: 9606]} Length = 110 Back     information, alignment and structure
>d1mxaa1 d.130.1.1 (A:1-102) S-adenosylmethionine synthetase {Escherichia coli [TaxId: 562]} Length = 102 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query399
d2p02a3144 S-adenosylmethionine synthetase {Human (Homo sapie 100.0
d1mxaa3152 S-adenosylmethionine synthetase {Escherichia coli 100.0
d2p02a2126 S-adenosylmethionine synthetase {Human (Homo sapie 100.0
d1mxaa2124 S-adenosylmethionine synthetase {Escherichia coli 100.0
d2p02a1110 S-adenosylmethionine synthetase {Human (Homo sapie 100.0
d1mxaa1102 S-adenosylmethionine synthetase {Escherichia coli 100.0
>d2p02a3 d.130.1.1 (A:274-417) S-adenosylmethionine synthetase {Human (Homo sapiens), isoform type-2 [TaxId: 9606]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: S-adenosylmethionine synthetase
superfamily: S-adenosylmethionine synthetase
family: S-adenosylmethionine synthetase
domain: S-adenosylmethionine synthetase
species: Human (Homo sapiens), isoform type-2 [TaxId: 9606]

Probab=100.00  E-value=1.2e-84  Score=574.86  Aligned_cols=144  Identities=67%  Similarity=1.141  Sum_probs=141.8

Q ss_pred             EccCCCCcCCCCceEEEecCCCccccccccCcCCCCCccchhhhHHHHHHHHHHHhhccccccEEEEEEEeccccceeEE
Q 015873          246 IGGPHGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDPTKVDRSGAYIVRQAAKSIVANGLARRCIVQVSYAIGVPEPLSVF  325 (399)
Q Consensus       246 iGGP~~DtGLTGRKiiVDTYGG~a~HGGGAfSGKDptKVDRSaAY~AR~iAKniVaaGla~~ceVQlsYAIGva~Pvsi~  325 (399)
                      ||||+||||||||||||||||||++|||||||||||||||||||||||||||||||||||+|||||||||||+++|+||+
T Consensus         1 iGGp~~d~GlTGRKiivDtYGg~~~hGGGafsgKD~tKvDRSaAY~AR~iAKniVaaglA~~c~VQlsYAIGva~Pvsi~   80 (144)
T d2p02a3           1 IGGPQGDAGLTGRKIIVDTYGGWGAHGGGAFSGKDYTKVDRSAAYAARWVAKSLVKGGLCRRVLVQVSYAIGVSHPLSIS   80 (144)
T ss_dssp             SCGGGTSCEETTSCTTTTTTTTSSCCCSCCCTTBCTTCHHHHHHHHHHHHHHHHHHTTSCSEEEEEEEECBTCCSCSEEE
T ss_pred             CCCCccccCCccceEEEEcCCCccccCCcCCCCCceehhHHHHHHHHHHHHHHHHHhCCCCeeEEEEEeecCccccceEE
Confidence            69999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEecCCCCCChHHHHHHHHHhCCCChHhHhhhcccccccccccccccccccCCCCCCCCCccccccccc
Q 015873          326 VDSYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKW  394 (399)
Q Consensus       326 V~tfgt~~~~~~~i~~~v~~~Fdl~p~~Ii~~L~L~~p~~~iY~~ta~yGHFGr~~~~fpWE~~d~~~~  394 (399)
                      ||||||+++++++|.++|+++|||||++||++|+|++|   ||++||+||||||+  +||||++|++++
T Consensus        81 VdtfGT~~~~~~~i~~~I~~~FDl~P~~II~~L~L~~P---iY~~TAaYGHFGR~--~f~WEk~dkve~  144 (144)
T d2p02a3          81 IFHYGTSQKSERELLEIVKKNFDLRPGVIVRDLDLKKP---IYQRTAAYGHFGRD--SFPWEVPKKLKY  144 (144)
T ss_dssp             EECTTCCSSCHHHHHHHHHHHCCCCHHHHHHHHTTTSS---CGGGGSSSCSSSST--TCGGGSCCCCCC
T ss_pred             EEeCCCcccCHHHHHHHHHhccCCCHHHHHHHhCCCCC---cchhccCccCCCCC--CCCeeccccccC
Confidence            99999999999999999999999999999999999999   99999999999997  599999999975
>d1mxaa3 d.130.1.1 (A:232-383) S-adenosylmethionine synthetase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2p02a2 d.130.1.1 (A:148-273) S-adenosylmethionine synthetase {Human (Homo sapiens), isoform type-2 [TaxId: 9606]} Back     information, alignment and structure
>d1mxaa2 d.130.1.1 (A:108-231) S-adenosylmethionine synthetase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2p02a1 d.130.1.1 (A:38-147) S-adenosylmethionine synthetase {Human (Homo sapiens), isoform type-2 [TaxId: 9606]} Back     information, alignment and structure
>d1mxaa1 d.130.1.1 (A:1-102) S-adenosylmethionine synthetase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure