Citrus Sinensis ID: 015878

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------40
MKSSPSTTSLGANRNYHSLLGKIPLSSNQNNTLNVNSNSTDIDICNKIEDTHSAFSRLELKQTNELANHAAQNIARRDKVVNAPSLEPESCASGKSNRKLKGLKSTKSGTQGSNADAPNGLNLSNGCRYDSSLGLLTRKFINLIQEAKDGTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKTSKNHIRWKGSDSLGTSKLDDQVARLKAEIESLHAEECRIDDSIREKQELIRTLEENENHQKYMFLTEEDIASLPCFQNQTLIAIKAPQASYIEVPDPDEDISFLKRQYKMIIRSTTGPIDVYLLSKYQSEGKDITLQQANSANPSTWNYEPCGVPNFRLSLEHEDNQKRSSDTFSLMSSEAASGIQKIVPSDCDIDDDYWFRSDPEVSITDLWNN
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHccHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHcHHHHHHHHHccccHHHccccEEEEEccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHccccccccEEEEEccccccEEEccccccHHHcccccEEEEEEcccccEEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
cccccccccccccccccccccccccccccccccccccccccccHHHHcccccccccccHccccccHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHcccccEcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccEEEEccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccEEEEEHHHHHccccccccEEEEEEcccccEEEcccccccccccccEEEEEEEcccccEEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEccccccccccccc
mksspsttslganrnyHSLLgkiplssnqnntlnvnsnstdidICNKIEDTHSAFSRLELKQTNELANHAAQNIarrdkvvnapslepescasgksnrklkglkstksgtqgsnadapnglnlsngcrydsslgLLTRKFINLIQEAKDGTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKtsknhirwkgsdslgtskLDDQVARLKAEIESLHAEECRIDDSIREKQELIRTLEENENhqkymflteediaslpcfqnqtliaikapqasyievpdpdedisFLKRQYKMIIRSTTGPIDVYLLSKYqsegkditlqqansanpstwnyepcgvpnfrlslehednqkrssdtfSLMSSEAASGiqkivpsdcdidddywfrsdpevsitdlwnn
mksspsttslganrNYHSLLGKIPLSSNQNNTLNVNSNSTDIDICNKIEDTHSAFSRLELKQTNELANHAAQNIARRDKVVNApslepescasgksnrklkglkstksgtqgsnadapnglnlsnGCRYDSSLGLLTRKFINLIQeakdgtldlnrtaevlevqkrriyditnvlegigliektsknhirwkgsdslgtsklDDQVARLKAEIeslhaeecriddsiREKQELIRTLEENENHQKYMFLTEEDIASLPCFQNQTLIAIKAPQASYIEVPDPDEDISFLKRQYKMIIRSTTGPIDVYLLSKYQSEGKDITLQQANSANPSTWNYEPCGVPNFRLSLEHEDNQKRSSDTFSLMSSEAASGIQKIVPSDCDIDDDYwfrsdpevsitdlwnn
MKSSPSTTSLGANRNYHSLLGKIPlssnqnntlnvnsnstDIDICNKIEDTHSAFSRLELKQTNELANHAAQNIARRDKVVNAPSLEPESCASGKSNRKLKGLKSTKSGTQGSNADAPNGLNLSNGCRYDSSLGLLTRKFINLIQEAKDGTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKTSKNHIRWKGSDSLGTSKLDDQVARLKAEIESLHAEECRIDDSIREKQELIRTLEENENHQKYMFLTEEDIASLPCFQNQTLIAIKAPQASYIEVPDPDEDISFLKRQYKMIIRSTTGPIDVYLLSKYQSEGKDITLQQANSANPSTWNYEPCGVPNFRLSLEHEDNQKRSSDTFSLMSSEAASGIQKIVPSDCDIDDDYWFRSDPEVSITDLWNN
*****************************************IDICNKIE**************************************************************************SNGCRYDSSLGLLTRKFINLIQEAKDGTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKTSKNHIRWK****************************CRI*********LIRT*****NHQKYMFLTEEDIASLPCFQNQTLIAIKAPQASYIEVPDPDEDISFLKRQYKMIIRSTTGPIDVYLLSKYQSE***I***********TWNYEPCGVPNFR***************************QKIVPSDCDIDDDYWFRSDPEVSIT*****
*************************************************************************************************************************************GLLTRKFINLIQEAKDGTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKTSKNHIRWKGSDSL**********************ECRIDDSIREKQELIRTLEENENHQKYMFLTEEDIASLPCFQNQTLIAIKAPQASYIEVPDPDEDISFLKRQYKMIIRSTTGPIDVYL*****************************************************************VPSDCDIDDDYWFRSDPEVSITDLWNN
**********GANRNYHSLLGKIPLSSNQNNTLNVNSNSTDIDICNKIEDTHSAFSRLELKQTNELANHAAQNIARRDKVVNAPSLEPESCASGKSNRKLKGLKSTKSGTQGSNADAPNGLNLSNGCRYDSSLGLLTRKFINLIQEAKDGTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKTSKNHIRWKGSDSLGTSKLDDQVARLKAEIESLHAEECRIDDSIREKQELIRTLEENENHQKYMFLTEEDIASLPCFQNQTLIAIKAPQASYIEVPDPDEDISFLKRQYKMIIRSTTGPIDVYLLSKYQSEGKDITLQQANSANPSTWNYEPCGVPNFRLSLEHEDNQKRSSDTFSLMSSEAASGIQKIVPSDCDIDDDYWFRSDPEVSITDLWNN
*************RNYHSLLGKIPLSSNQNNTLNVNSNSTDIDICNKIEDTHSAF*R*********************************************************************CRYDSSLGLLTRKFINLIQEAKDGTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKTSKNHIRWKGSDSLGTSKLDDQVARLKAEIESLHAEECRIDDSIREKQELIRTLEENENHQKYMFLTEEDIASLPCFQNQTLIAIKAPQASYIEVPDPDEDISFLKRQYKMIIRSTTGPIDVYLLSKY*******************************************************SGIQKIVPSDCDIDDDYWFRSDPEVSITDLWNN
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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MKSSPSTTSLGANRNYHSLLGKIPLSSNQNNTLNVNSNSTDIDICNKIEDTHSAFSRLELKQTNELANHAAQNIARRDKVVNAPSLEPESCASGKSNRKLKGLKSTKSGTQGSNADAPNGLNLSNGCRYDSSLGLLTRKFINLIQEAKDGTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKTSKNHIRWKGSDSLGxxxxxxxxxxxxxxxxxxxxxECRxxxxxxxxxxxxxxxxxxxxxQKYMFLTEEDIASLPCFQNQTLIAIKAPQASYIEVPDPDEDISFLKRQYKMIIRSTTGPIDVYLLSKYQSEGKDITLQQANSANPSTWNYEPCGVPNFRLSLEHEDNQKRSSDTFSLMSSEAASGIQKIVPSDCDIDDDYWFRSDPEVSITDLWNN
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query399 2.2.26 [Sep-21-2011]
Q9FV70396 Transcription factor E2FC yes no 0.676 0.681 0.577 3e-89
Q9FV71469 Transcription factor E2FB no no 0.756 0.643 0.491 7e-81
Q9FNY0485 Transcription factor E2FA no no 0.796 0.655 0.481 4e-75
Q16254 413 Transcription factor E2F4 yes no 0.448 0.433 0.481 7e-38
Q8R0K9 410 Transcription factor E2F4 yes no 0.448 0.436 0.481 2e-37
Q61502335 Transcription factor E2F5 no no 0.508 0.605 0.432 5e-37
Q15329346 Transcription factor E2F5 no no 0.671 0.774 0.370 5e-37
O35261457 Transcription factor E2F3 no no 0.443 0.387 0.440 3e-36
O00716465 Transcription factor E2F3 no no 0.443 0.380 0.440 4e-36
Q62814300 Transcription factor E2F5 no no 0.451 0.6 0.470 5e-36
>sp|Q9FV70|E2FC_ARATH Transcription factor E2FC OS=Arabidopsis thaliana GN=E2FC PE=1 SV=1 Back     alignment and function desciption
 Score =  328 bits (842), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 176/305 (57%), Positives = 217/305 (71%), Gaps = 35/305 (11%)

Query: 97  NRKLKGLKSTKSGTQGSNADAPNG-LN-LSNGCRYDSSLGLLTRKFINLIQEAKDGTLDL 154
           N+   G K  K+G + +N +  NG LN  S  CRYDSSLGLLT+KF+ LIQEA+DGTLDL
Sbjct: 122 NKSKGGTKLLKAGKRMANGEVQNGGLNGASINCRYDSSLGLLTKKFVKLIQEAEDGTLDL 181

Query: 155 NRTAEVLEVQKRRIYDITNVLEGIGLIEKTSKNHIRWKGSDSLGTSKLDDQVARLKAEIE 214
           N  A VLEVQKRRIYDITNVLEGIGLIEKT+KNHIRWKG+D+LG   L DQ++RLK+E+E
Sbjct: 182 NYCAVVLEVQKRRIYDITNVLEGIGLIEKTTKNHIRWKGADNLGQKDLGDQISRLKSEVE 241

Query: 215 SLHAEECRIDDSIREKQELIRTLEENENHQKYMFLTEEDIASLPCFQNQTLIAIKAPQAS 274
           S+ +EE R+DD IRE+QE +R+LEE++  ++YMF+TEEDI SLP FQNQTL+AIKAP AS
Sbjct: 242 SMQSEESRLDDLIRERQEALRSLEEDDYCRRYMFMTEEDITSLPRFQNQTLLAIKAPTAS 301

Query: 275 YIEVPDPDEDISFLKRQYKMIIRSTTGPIDVYLLSKYQSEGKDITLQQANSANPSTWNYE 334
           YIEVPDPDE +SF  +QY+M+IRS  GPIDVYLLSKY+ +  + + +  N ++       
Sbjct: 302 YIEVPDPDE-MSF-PQQYRMVIRSRMGPIDVYLLSKYKGDSAETSDKLGNESDQKA---- 355

Query: 335 PCGVPNFRLSLEHEDNQKRSSDTFSLMSSEAASGIQKIVPSDCDIDDDYWFRSDPEVSIT 394
           P GV                 DT SL          KIV SD D+  DYWF SD EVS+T
Sbjct: 356 PVGV-----------------DTPSL----------KIVTSDTDLKADYWFESDAEVSLT 388

Query: 395 DLWNN 399
           DLW+N
Sbjct: 389 DLWSN 393
Involved in transcriptional repression. May act by repressing E2F-regulated genes in mature differentiated cells, but is not an antagonist of E2FA. Restricts cell division and is involved in the coordination between cell proliferation and endoreduplication during development. May play a role during the transition from skotomorphogenesis to photomorphogenesis. Regulated by phosphorylation-dependent proteolysis via the protein-ubiquitin ligase SCF(SKP2A) complex.
Arabidopsis thaliana (taxid: 3702)
>sp|Q9FV71|E2FB_ARATH Transcription factor E2FB OS=Arabidopsis thaliana GN=E2FB PE=1 SV=1 Back     alignment and function description
>sp|Q9FNY0|E2FA_ARATH Transcription factor E2FA OS=Arabidopsis thaliana GN=E2FA PE=1 SV=1 Back     alignment and function description
>sp|Q16254|E2F4_HUMAN Transcription factor E2F4 OS=Homo sapiens GN=E2F4 PE=1 SV=2 Back     alignment and function description
>sp|Q8R0K9|E2F4_MOUSE Transcription factor E2F4 OS=Mus musculus GN=E2f4 PE=2 SV=1 Back     alignment and function description
>sp|Q61502|E2F5_MOUSE Transcription factor E2F5 OS=Mus musculus GN=E2f5 PE=2 SV=2 Back     alignment and function description
>sp|Q15329|E2F5_HUMAN Transcription factor E2F5 OS=Homo sapiens GN=E2F5 PE=1 SV=1 Back     alignment and function description
>sp|O35261|E2F3_MOUSE Transcription factor E2F3 OS=Mus musculus GN=E2f3 PE=1 SV=2 Back     alignment and function description
>sp|O00716|E2F3_HUMAN Transcription factor E2F3 OS=Homo sapiens GN=E2F3 PE=1 SV=1 Back     alignment and function description
>sp|Q62814|E2F5_RAT Transcription factor E2F5 (Fragment) OS=Rattus norvegicus GN=E2f5 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query399
255538912386 E2F4,5, putative [Ricinus communis] gi|2 0.847 0.875 0.604 1e-115
359492228437 PREDICTED: transcription factor E2FC-lik 0.809 0.739 0.606 1e-111
302142646436 unnamed protein product [Vitis vinifera] 0.807 0.738 0.600 1e-111
356517978473 PREDICTED: transcription factor E2FC-lik 0.771 0.651 0.582 4e-98
356509584355 PREDICTED: transcription factor E2FC-lik 0.761 0.856 0.566 4e-97
224062015476 transcription factor E2F [Populus tricho 0.894 0.75 0.527 2e-95
297847022415 T2E6.2 [Arabidopsis lyrata subsp. lyrata 0.802 0.771 0.555 3e-90
147839835389 hypothetical protein VITISV_039339 [Viti 0.691 0.709 0.529 1e-89
22086272386 E2F-related transcription factor 2 [Nocc 0.689 0.712 0.560 4e-89
449470106410 PREDICTED: transcription factor E2FC-lik 0.817 0.795 0.505 2e-87
>gi|255538912|ref|XP_002510521.1| E2F4,5, putative [Ricinus communis] gi|223551222|gb|EEF52708.1| E2F4,5, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  420 bits (1080), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 223/369 (60%), Positives = 268/369 (72%), Gaps = 31/369 (8%)

Query: 30  NNTLNVNSNSTDIDICNKIEDTHSAFSRLELKQTNELANHAAQ-NIARRDKVVNAPSLEP 88
           NN  N N N   + +  +  DT SAF RL LKQ NE  N  A+  I   +KVV   +L+P
Sbjct: 42  NNHFNFNCN-LPLGLQLQAADTPSAFRRLALKQNNEKDNQEAKVTIPTCNKVVADRTLDP 100

Query: 89  ESCASGKSNRKLKGLKSTKSGTQGSNADAPNGLNLSNGCRYDSSLGLLTRKFINLIQEAK 148
           +    GK N + K  K+ +SG+Q SNAD  NGLN + GCRYDSSLGLLT+KF+ LIQEAK
Sbjct: 101 QCVTGGKRNSRSKVPKNVRSGSQKSNADL-NGLNPATGCRYDSSLGLLTKKFVKLIQEAK 159

Query: 149 DGTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKTSKNHIRWKGSDSLGTSKLDDQVAR 208
           DGTLDLNRTA+VLEVQKRRIYDITNVLEGI LIEKTSKNHIRWKG D  G+ +L+D V  
Sbjct: 160 DGTLDLNRTADVLEVQKRRIYDITNVLEGIELIEKTSKNHIRWKGYDDCGSKELEDHVTE 219

Query: 209 LKAEIESLHAEECRIDDSIREKQELIRTLEENENHQKYMFLTEEDIASLPCFQNQTLIAI 268
           LK E+ESLHAE+ R+D+SIREKQEL+R LEE+EN ++Y+F+TEEDI SL C+QN+TL+AI
Sbjct: 220 LKTEVESLHAEDHRLDESIREKQELLRALEEDENKKRYLFMTEEDITSLACYQNRTLLAI 279

Query: 269 KAPQASYIEVPDPDEDISFLKRQYKMIIRSTTGPIDVYLLSKYQSEGKDITLQQANSANP 328
           KAPQASY+EVPDPDEDI     QYKMI+RSTTGPIDVYLLS  + E +            
Sbjct: 280 KAPQASYLEVPDPDEDIG--SPQYKMIVRSTTGPIDVYLLSPRRVELEG----------- 326

Query: 329 STWNYEPCGVPNFRLSLEHEDNQKRSSDTFSLMSSEAASGIQKIVPSDCDIDDDYWFRSD 388
                         LSLEH+ NQ ++ + +S M SE +SG+QKI PSDCDIDDDYWFRSD
Sbjct: 327 --------------LSLEHQQNQSKNPEVYSSMHSE-SSGVQKITPSDCDIDDDYWFRSD 371

Query: 389 PEVSITDLW 397
           PEVSI++LW
Sbjct: 372 PEVSISELW 380

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|359492228|ref|XP_002280139.2| PREDICTED: transcription factor E2FC-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|302142646|emb|CBI19849.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|356517978|ref|XP_003527661.1| PREDICTED: transcription factor E2FC-like [Glycine max] Back     alignment and taxonomy information
>gi|356509584|ref|XP_003523527.1| PREDICTED: transcription factor E2FC-like [Glycine max] Back     alignment and taxonomy information
>gi|224062015|ref|XP_002300712.1| transcription factor E2F [Populus trichocarpa] gi|222842438|gb|EEE79985.1| transcription factor E2F [Populus trichocarpa] Back     alignment and taxonomy information
>gi|297847022|ref|XP_002891392.1| T2E6.2 [Arabidopsis lyrata subsp. lyrata] gi|297337234|gb|EFH67651.1| T2E6.2 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|147839835|emb|CAN61698.1| hypothetical protein VITISV_039339 [Vitis vinifera] Back     alignment and taxonomy information
>gi|22086272|gb|AAM90621.1|AF400001_1 E2F-related transcription factor 2 [Noccaea caerulescens] Back     alignment and taxonomy information
>gi|449470106|ref|XP_004152759.1| PREDICTED: transcription factor E2FC-like [Cucumis sativus] gi|449521766|ref|XP_004167900.1| PREDICTED: transcription factor E2FC-like [Cucumis sativus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query399
TAIR|locus:2202390396 ATE2F2 [Arabidopsis thaliana ( 0.726 0.732 0.538 2.5e-74
TAIR|locus:3685148469 E2F1 "E2F transcription factor 0.736 0.626 0.486 1.2e-67
TAIR|locus:2039220514 E2F3 "E2F transcription factor 0.807 0.626 0.423 9.9e-55
ZFIN|ZDB-GENE-040426-2773 393 e2f4 "E2F transcription factor 0.476 0.483 0.435 6.6e-41
MGI|MGI:105091335 E2f5 "E2F transcription factor 0.511 0.608 0.430 1.4e-40
UNIPROTKB|C9JYE9347 E2F5 "Transcription factor E2F 0.629 0.723 0.383 2.8e-40
UNIPROTKB|Q15329346 E2F5 "Transcription factor E2F 0.629 0.725 0.380 2.8e-40
UNIPROTKB|F1RXB8345 E2F5 "Uncharacterized protein" 0.496 0.573 0.446 4.6e-40
UNIPROTKB|D4ADJ4341 E2f5 "Transcription factor E2F 0.689 0.806 0.367 4.6e-40
UNIPROTKB|F1LRB5339 E2f5 "Transcription factor E2F 0.689 0.811 0.366 4.6e-40
TAIR|locus:2202390 ATE2F2 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 750 (269.1 bits), Expect = 2.5e-74, P = 2.5e-74
 Identities = 161/299 (53%), Positives = 207/299 (69%)

Query:    62 QTNELANHAAQNIARRDKVVNAPSLEPESCASGKSNRKLKGLKSTKSGTQGSNADAPNG- 120
             Q   +AN +        KV+      P++      N+   G K  K+G + +N +  NG 
Sbjct:    88 QLGSIANMSGGESIDIAKVIVKQESSPQN-VKRVYNKSKGGTKLLKAGKRMANGEVQNGG 146

Query:   121 LN-LSNGCRYDSSLGLLTRKFINLIQEAKDGTLDLNRTAEVLEVQKRRIYDITNVLEGIG 179
             LN  S  CRYDSSLGLLT+KF+ LIQEA+DGTLDLN  A VLEVQKRRIYDITNVLEGIG
Sbjct:   147 LNGASINCRYDSSLGLLTKKFVKLIQEAEDGTLDLNYCAVVLEVQKRRIYDITNVLEGIG 206

Query:   180 LIEKTSKNHIRWKGSDSLGTSKLDDQVARLKAEIESLHAEECRIDDSIREKQELIRTLEE 239
             LIEKT+KNHIRWKG+D+LG   L DQ++RLK+E+ES+ +EE R+DD IRE+QE +R+LEE
Sbjct:   207 LIEKTTKNHIRWKGADNLGQKDLGDQISRLKSEVESMQSEESRLDDLIRERQEALRSLEE 266

Query:   240 NENHQKYMFLTEEDIASLPCFQNQTLIAIKAPQASYIEVPDPDEDISFLKRQYKMIIRST 299
             ++  ++YMF+TEEDI SLP FQNQTL+AIKAP ASYIEVPDPDE +SF  +QY+M+IRS 
Sbjct:   267 DDYCRRYMFMTEEDITSLPRFQNQTLLAIKAPTASYIEVPDPDE-MSF-PQQYRMVIRSR 324

Query:   300 TGPIDVYLLSKYQSEGKDITLQQANSANPSTWNYEPCGVPNFRLSLEHEDNQKRSSDTF 358
              GPIDVYLLSKY+ +  + + +  N ++       P GV    L +   D   ++   F
Sbjct:   325 MGPIDVYLLSKYKGDSAETSDKLGNESDQKA----PVGVDTPSLKIVTSDTDLKADYWF 379
GO:0005634 "nucleus" evidence=ISM;IDA
GO:0005667 "transcription factor complex" evidence=IEA
GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA
GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS;IDA
GO:0003677 "DNA binding" evidence=IDA
GO:0000902 "cell morphogenesis" evidence=IMP
GO:0005515 "protein binding" evidence=IPI
GO:0051301 "cell division" evidence=IMP
GO:0005730 "nucleolus" evidence=IDA
GO:0042023 "DNA endoreduplication" evidence=RCA;IMP
GO:0046982 "protein heterodimerization activity" evidence=IPI
GO:0051782 "negative regulation of cell division" evidence=IMP
GO:0006302 "double-strand break repair" evidence=RCA
GO:0010090 "trichome morphogenesis" evidence=RCA
GO:0010332 "response to gamma radiation" evidence=RCA
GO:0051302 "regulation of cell division" evidence=RCA
TAIR|locus:3685148 E2F1 "E2F transcription factor 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2039220 E2F3 "E2F transcription factor 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-040426-2773 e2f4 "E2F transcription factor 4" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
MGI|MGI:105091 E2f5 "E2F transcription factor 5" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|C9JYE9 E2F5 "Transcription factor E2F5" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|Q15329 E2F5 "Transcription factor E2F5" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F1RXB8 E2F5 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|D4ADJ4 E2f5 "Transcription factor E2F5" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|F1LRB5 E2f5 "Transcription factor E2F5" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9FV70E2FC_ARATHNo assigned EC number0.57700.67660.6818yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
E2Fc
transcription factor E2F (476 aa)
(Populus trichocarpa)
Predicted Functional Partners:
DPb
transcription factor DP, E2 dimerization partner protein (300 aa)
    ••• 0.745
DPa
transcription factor DP, E2 dimerization partner protein (301 aa)
    ••• 0.734
gw1.II.1126.1
tetrahydrofolate dehydrogenase/cyclohydrolase (EC-6.3.4.3) (290 aa)
      • 0.702
CDKD
hypothetical protein (416 aa)
      • 0.687
CKS2
SubName- Full=Putative uncharacterized protein; (83 aa)
      • 0.687
RBL901
SubName- Full=Putative uncharacterized protein;; Regulator of biological processes that recruit [...] (965 aa)
    • • 0.547
CYCD7
SubName- Full=D7-type cyclin; (356 aa)
      • 0.504

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query399
pfam0231967 pfam02319, E2F_TDP, E2F/DP family winged-helix DNA 7e-31
>gnl|CDD|202203 pfam02319, E2F_TDP, E2F/DP family winged-helix DNA-binding domain Back     alignment and domain information 
 Score =  112 bits (282), Expect = 7e-31
 Identities = 45/67 (67%), Positives = 53/67 (79%), Gaps = 1/67 (1%)

Query: 128 RYDSSLGLLTRKFINLIQEAKDGTLDLNRTAEVLEV-QKRRIYDITNVLEGIGLIEKTSK 186
           R + SLGLLT+KF+ L +++ DG  DLN  A+ L+V QKRRIYDITNVLEGIGLIEK SK
Sbjct: 1   RKEKSLGLLTQKFLKLCEKSPDGITDLNEAAKELDVKQKRRIYDITNVLEGIGLIEKKSK 60

Query: 187 NHIRWKG 193
           N IRW G
Sbjct: 61  NEIRWIG 67

This family contains the transcription factor E2F and its dimerisation partners TDP1 and TDP2, which stimulate E2F-dependent transcription. E2F binds to DNA as a homodimer or as a heterodimer in association with TDP1/2, the heterodimer having increased binding efficiency. The crystal structure of an E2F4-DP2-DNA complex shows that the DNA-binding domains of the E2F and DP proteins both have a fold related to the winged-helix DNA-binding motif. Recognition of the central c/gGCGCg/c sequence of the consensus DNA-binding site is symmetric, and amino acids that contact these bases are conserved among all known E2F and DP proteins. Length = 67

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 399
KOG2577354 consensus Transcription factor E2F/dimerization pa 100.0
PF0231971 E2F_TDP: E2F/DP family winged-helix DNA-binding do 99.87
KOG2578 388 consensus Transcription factor E2F/dimerization pa 99.79
KOG2578388 consensus Transcription factor E2F/dimerization pa 99.03
KOG2829326 consensus E2F-like protein [Transcription] 98.95
PF0197868 TrmB: Sugar-specific transcriptional regulator Trm 94.9
COG1378247 Predicted transcriptional regulators [Transcriptio 92.96
PF0827955 HTH_11: HTH domain; InterPro: IPR013196 Winged hel 92.93
smart0034691 HTH_ICLR helix_turn_helix isocitrate lyase regulat 92.36
smart0042053 HTH_DEOR helix_turn_helix, Deoxyribose operon repr 91.79
cd0009267 HTH_CRP helix_turn_helix, cAMP Regulatory protein 91.55
smart0055068 Zalpha Z-DNA-binding domain in adenosine deaminase 90.53
PF0933952 HTH_IclR: IclR helix-turn-helix domain; InterPro: 89.32
COG3355126 Predicted transcriptional regulator [Transcription 88.61
PF1341248 HTH_24: Winged helix-turn-helix DNA-binding; PDB: 87.44
PF1280262 MarR_2: MarR family; PDB: 3ECO_B 2QWW_B 3KP6_B 3KP 87.24
smart0041866 HTH_ARSR helix_turn_helix, Arsenical Resistance Op 86.66
PF14394171 DUF4423: Domain of unknown function (DUF4423) 85.38
PF1346368 HTH_27: Winged helix DNA-binding domain; PDB: 3GFL 83.6
PF0208283 Rrf2: Transcriptional regulator; InterPro: IPR0009 82.81
PF0104759 MarR: MarR family; InterPro: IPR000835 The MarR-ty 81.88
TIGR02944130 suf_reg_Xantho FeS assembly SUF system regulator, 81.3
PF0907985 Cdc6_C: CDC6, C terminal ; InterPro: IPR015163 The 80.49
PF1373055 HTH_36: Helix-turn-helix domain 80.36
>KOG2577 consensus Transcription factor E2F/dimerization partner (TDP) [Transcription] Back     alignment and domain information 
Probab=100.00  E-value=5.2e-66  Score=510.42  Aligned_cols=187  Identities=52%  Similarity=0.827  Sum_probs=179.6

Q ss_pred             CCCCCCCCCCCcHHHHHHHHHHHHHhCCCCcccHHHHHHHhcceeeehhhhHHhhhhccceecccCCeeEEecCCCCCCc
Q 015878          121 LNLSNGCRYDSSLGLLTRKFINLIQEAKDGTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKTSKNHIRWKGSDSLGTS  200 (399)
Q Consensus       121 ~tp~~~~R~dkSLglLTkkFI~Ll~~ap~g~ldLn~aA~~L~VqKRRIYDItNVLEgIgLIeK~sKN~i~W~G~~~s~~~  200 (399)
                      .+|...+|+++|||+||+|||.|++++|+|++|||+||++|+|+|||||||||||||||||+|++||+|+|+|.+.+..+
T Consensus        61 ~s~~~~~R~d~SLglLTkKFv~Llq~s~dGvldLn~aA~~L~VqKRRIYDITNVLEGI~LIeKksKN~IqW~G~~~~~~~  140 (354)
T KOG2577|consen   61 SSPSESTRSDTSLGLLTKKFVDLLQESPDGVLDLNKAAEVLNVQKRRIYDITNVLEGIGLIEKKSKNNIQWIGGDFNSTG  140 (354)
T ss_pred             cCCCCcccchhhHHHHHHHHHHHHHhCCCceeeHHHHHHHhccccceeeehhhhhhcccceeeccccceeeecCCCcccc
Confidence            55678999999999999999999999999999999999999999999999999999999999999999999999987667


Q ss_pred             chHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhhcccccccccHhhhccCCCCCCceEEEEeCCCCceEEecC
Q 015878          201 KLDDQVARLKAEIESLHAEECRIDDSIREKQELIRTLEENENHQKYMFLTEEDIASLPCFQNQTLIAIKAPQASYIEVPD  280 (399)
Q Consensus       201 ~~~~~~~~Lk~El~~L~~~E~~LD~lI~~~~q~Lr~Lted~~n~~~aYVT~eDI~~l~~f~~qTvIAIKAP~gT~LEVPd  280 (399)
                      +..++.+.|++|++.|.++|+.||++|++|+++|+.|++|..|++|+|||++||++|+.|++|||||||||++|+||||+
T Consensus       141 ~~~e~~~~l~~e~~~L~~~E~~LD~~i~~~q~~L~~lted~~n~~laYVT~eDI~~i~~f~~q~vi~vkap~et~levp~  220 (354)
T KOG2577|consen  141 GVPERLNGLEAEVEDLSQEEDDLDQLIRDCQQNLRLLTEDVENRRLAYVTYEDIRSIPGFDEQTVIAVKAPPETRLEVPD  220 (354)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhcccceeeeHHHHhhccccCCceEEEEecCCcceEeccc
Confidence            78888899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CcchhhcccceEEEEEecCCCCeEEEEecCCCC
Q 015878          281 PDEDISFLKRQYKMIIRSTTGPIDVYLLSKYQS  313 (399)
Q Consensus       281 P~e~~~~~~~~yqI~LkS~~GPIdVyL~~~~~~  313 (399)
                      |++      .+|+|+|+|++||||||||+.++.
T Consensus       221 ~~~------~~~~i~L~s~~GpI~v~l~~~e~~  247 (354)
T KOG2577|consen  221 PDE------DRYQIRLKSNQGPIDVYLCSEEEG  247 (354)
T ss_pred             CCC------CceEEEeccCCCceeEEecccccc
Confidence            984      459999999999999999998885

>PF02319 E2F_TDP: E2F/DP family winged-helix DNA-binding domain; InterPro: IPR003316 The mammalian transcription factor E2F plays an important role in regulating the expression of genes that are required for passage through the cell cycle Back     alignment and domain information
>KOG2578 consensus Transcription factor E2F/dimerization partner (TDP)-like proteins [Transcription] Back     alignment and domain information
>KOG2578 consensus Transcription factor E2F/dimerization partner (TDP)-like proteins [Transcription] Back     alignment and domain information
>KOG2829 consensus E2F-like protein [Transcription] Back     alignment and domain information
>PF01978 TrmB: Sugar-specific transcriptional regulator TrmB; InterPro: IPR002831 TrmB, is a protein of 38,800 apparent molecular weight, that is involved in the maltose-specific regulation of the trehalose/maltose ABC transport operon in Thermococcus litoralis Back     alignment and domain information
>COG1378 Predicted transcriptional regulators [Transcription] Back     alignment and domain information
>PF08279 HTH_11: HTH domain; InterPro: IPR013196 Winged helix DNA-binding proteins share a related winged helix-turn-helix DNA-binding motif, where the "wings", or loops, are small beta-sheets Back     alignment and domain information
>smart00346 HTH_ICLR helix_turn_helix isocitrate lyase regulation Back     alignment and domain information
>smart00420 HTH_DEOR helix_turn_helix, Deoxyribose operon repressor Back     alignment and domain information
>cd00092 HTH_CRP helix_turn_helix, cAMP Regulatory protein C-terminus; DNA binding domain of prokaryotic regulatory proteins belonging to the catabolite activator protein family Back     alignment and domain information
>smart00550 Zalpha Z-DNA-binding domain in adenosine deaminases Back     alignment and domain information
>PF09339 HTH_IclR: IclR helix-turn-helix domain; InterPro: IPR005471 The many bacterial transcription regulation proteins which bind DNA through a 'helix-turn-helix' motif can be classified into subfamilies on the basis of sequence similarities Back     alignment and domain information
>COG3355 Predicted transcriptional regulator [Transcription] Back     alignment and domain information
>PF13412 HTH_24: Winged helix-turn-helix DNA-binding; PDB: 1I1G_B 2IA0_B 3I4P_A 2GQQ_A 2L4A_A 2CFX_B 2DBB_B 2EFO_A 2EFQ_A 2PN6_A Back     alignment and domain information
>PF12802 MarR_2: MarR family; PDB: 3ECO_B 2QWW_B 3KP6_B 3KP4_B 3KP2_A 3KP5_A 3KP3_B 3KP7_A 3NQO_B 3K0L_B Back     alignment and domain information
>smart00418 HTH_ARSR helix_turn_helix, Arsenical Resistance Operon Repressor Back     alignment and domain information
>PF14394 DUF4423: Domain of unknown function (DUF4423) Back     alignment and domain information
>PF13463 HTH_27: Winged helix DNA-binding domain; PDB: 3GFL_A 2YR2_B 3GFM_A 3GFJ_A 3GF2_A 3GEZ_A 2GXG_A 3GFI_A 2EB7_A Back     alignment and domain information
>PF02082 Rrf2: Transcriptional regulator; InterPro: IPR000944 The following uncharacterised bacterial proteins have been shown to be evolutionary related, Desulfovibrio vulgaris protein Rrf2; Escherichia coli hypothetical proteins yfhP and yjeB; Bacillus subtilis hypothetical proteins yhdE, yrzC and ywgB; Mycobacterium tuberculosis hypothetical protein Rv1287; and Synechocystis sp Back     alignment and domain information
>PF01047 MarR: MarR family; InterPro: IPR000835 The MarR-type HTH domain is a DNA-binding, winged helix-turn-helix (wHTH) domain of about 135 amino acids present in transcription regulators of the MarR/SlyA family, involved in the development of antibiotic resistance Back     alignment and domain information
>TIGR02944 suf_reg_Xantho FeS assembly SUF system regulator, gammaproteobacterial Back     alignment and domain information
>PF09079 Cdc6_C: CDC6, C terminal ; InterPro: IPR015163 The C-terminal domain of CDC6 assumes a winged helix fold, with a five alpha-helical bundle (alpha15-alpha19) structure, backed on one side by three beta strands (beta6-beta8) Back     alignment and domain information
>PF13730 HTH_36: Helix-turn-helix domain Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query399
1cf7_A76 Structural Basis Of Dna Recognition By The Heterodi 5e-21
>pdb|1CF7|A Chain A, Structural Basis Of Dna Recognition By The Heterodimeric Cell Cycle Transcription Factor E2f-Dp Length = 76 Back     alignment and structure 
Iteration: 1

 Score = 98.6 bits (244), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 49/67 (73%), Positives = 56/67 (83%), Gaps = 1/67 (1%)
Query: 128 RYDSSLGLLTRKFINLIQEAKDGTLDLNRTAEVLEV-QKRRIYDITNVLEGIGLIEKTSK 186
           R++ SLGLLT KF++L+QEAKDG LDL   A+ L V QKRRIYDITNVLEGIGLIEK SK
Sbjct: 7   RHEKSLGLLTTKFVSLLQEAKDGVLDLKLAADTLAVRQKRRIYDITNVLEGIGLIEKKSK 66
Query: 187 NHIRWKG 193
           N I+WKG
Sbjct: 67  NSIQWKG 73

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query399
2aze_B106 Transcription factor E2F1; coiled coil, beta sandw 2e-34
1cf7_A76 Protein (transcription factor E2F-4); E2F, winged- 5e-29
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-07
1cf7_B95 Protein (transcription factor DP-2); E2F, winged-h 8e-04
>2aze_B Transcription factor E2F1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.2 Length = 106 Back     alignment and structure
 Score =  122 bits (308), Expect = 2e-34
 Identities = 26/111 (23%), Positives = 55/111 (49%), Gaps = 7/111 (6%)

Query: 200 SKLDDQVARLKAEIESLHAEECRIDDSIREKQELIRTLEENENHQKYMFLTEEDIASLPC 259
           S +  ++  L  ++  L   E ++D  +      +R L E+ + Q+  ++T +D+ S+  
Sbjct: 2   SHMGGRLEGLTQDLRQLQESEQQLDHLMNICTTQLRLLSEDTDSQRLAYVTCQDLRSIAD 61

Query: 260 FQNQTLIAIKAPQASYIEVPDPDEDISFLKRQYKMIIRSTTGPIDVYLLSK 310
              Q ++ IKAP  + ++  D  E        +++ ++S  GPIDV+L  +
Sbjct: 62  PAEQMVMVIKAPPETQLQAVDSSE-------NFQISLKSKQGPIDVFLCPE 105
>1cf7_A Protein (transcription factor E2F-4); E2F, winged-helix, DNA-binding domain, cell cycle, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: a.4.5.17 Length = 76 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1cf7_B Protein (transcription factor DP-2); E2F, winged-helix, DNA-binding domain, cell cycle, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: a.4.5.17 Length = 95 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query399
2aze_B106 Transcription factor E2F1; coiled coil, beta sandw 100.0
1cf7_A76 Protein (transcription factor E2F-4); E2F, winged- 99.95
1cf7_B95 Protein (transcription factor DP-2); E2F, winged-h 99.34
1qgp_A77 Protein (double stranded RNA adenosine deaminase); 92.53
2xvc_A59 ESCRT-III, SSO0910; cell cycle, cell division, cyt 92.43
1oyi_A82 Double-stranded RNA-binding protein; (alpha+beta) 92.11
1qbj_A81 Protein (double-stranded RNA specific adenosine D 92.03
2heo_A67 Z-DNA binding protein 1; protein DLM1-Z-DNA comple 91.54
1r7j_A95 Conserved hypothetical protein SSO10A; winged heli 91.29
3r0a_A123 Putative transcriptional regulator; structural gen 90.19
3deu_A166 Transcriptional regulator SLYA; MARR, WING-helix, 90.18
3eco_A139 MEPR; mutlidrug efflux pump regulator winged helix 89.96
3jw4_A148 Transcriptional regulator, MARR/EMRR family; DNA-b 89.83
3qph_A342 TRMB, A global transcription regulator; transcript 89.47
2oqg_A114 Possible transcriptional regulator, ARSR family P; 89.23
3bro_A141 Transcriptional regulator; helix_TURN_helix, multi 87.81
2htj_A81 P fimbrial regulatory protein KS71A; winged helix- 87.74
2a61_A145 Transcriptional regulator TM0710; APC4350, MCSG, m 87.69
1ku9_A152 Hypothetical protein MJ223; putative transcription 86.86
2gxg_A146 146AA long hypothetical transcriptional regulator; 86.37
1sfx_A109 Conserved hypothetical protein AF2008; structural 84.64
2fa5_A162 Transcriptional regulator MARR/EMRR family; multip 84.29
3cuo_A99 Uncharacterized HTH-type transcriptional regulato; 83.72
2fbh_A146 Transcriptional regulator PA3341; MARR, transcript 83.6
2kko_A108 Possible transcriptional regulatory protein (possi 83.35
3s2w_A159 Transcriptional regulator, MARR family; structural 82.96
1y0u_A96 Arsenical resistance operon repressor, putative; s 82.87
2y75_A129 HTH-type transcriptional regulator CYMR; DNA bindi 82.71
2hr3_A147 Probable transcriptional regulator; MCSG, structur 82.61
2qww_A154 Transcriptional regulator, MARR family; YP_013417. 82.53
1on2_A142 Transcriptional regulator MNTR; helix-turn-helix, 82.38
3g3z_A145 NMB1585, transcriptional regulator, MARR family; t 82.04
3u2r_A168 Regulatory protein MARR; structural genomics, PSI- 81.84
3nrv_A148 Putative transcriptional regulator (MARR/EMRR FAM; 81.8
2d1h_A109 ST1889, 109AA long hypothetical transcriptional re 81.65
3oop_A143 LIN2960 protein; protein structure initiative, PSI 81.59
3jth_A98 Transcription activator HLYU; transcription factor 81.35
3cjn_A162 Transcriptional regulator, MARR family; silicibact 80.67
2frh_A127 SARA, staphylococcal accessory regulator A; winged 80.61
2eth_A154 Transcriptional regulator, putative, MAR family; M 80.55
3bja_A139 Transcriptional regulator, MARR family, putative; 80.43
2x4h_A139 Hypothetical protein SSO2273; transcription; 2.30A 80.25
1lj9_A144 Transcriptional regulator SLYA; HTH DNA binding pr 80.03
3bpv_A138 Transcriptional regulator; MARR, DNA binding, tran 80.02
>2aze_B Transcription factor E2F1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.2 Back     alignment and structure
Probab=100.00  E-value=6.3e-37  Score=259.10  Aligned_cols=102  Identities=25%  Similarity=0.485  Sum_probs=96.7

Q ss_pred             hHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhhcccccccccHhhhccCCCCCCceEEEEeCCCCceEEecCC
Q 015878          202 LDDQVARLKAEIESLHAEECRIDDSIREKQELIRTLEENENHQKYMFLTEEDIASLPCFQNQTLIAIKAPQASYIEVPDP  281 (399)
Q Consensus       202 ~~~~~~~Lk~El~~L~~~E~~LD~lI~~~~q~Lr~Lted~~n~~~aYVT~eDI~~l~~f~~qTvIAIKAP~gT~LEVPdP  281 (399)
                      +..++..||+|+++|..+|+.||++|++|+++|++|++|+.|.+|+|||++||++|+||++|||||||||+||+||||+|
T Consensus         4 ~~~~~~~Lk~El~~L~~~E~~LD~~i~~~~~~l~~lted~~n~~~aYVT~~Di~~i~~f~~qtviaIkAP~gT~LeVpdp   83 (106)
T 2aze_B            4 MGGRLEGLTQDLRQLQESEQQLDHLMNICTTQLRLLSEDTDSQRLAYVTCQDLRSIADPAEQMVMVIKAPPETQLQAVDS   83 (106)
T ss_dssp             --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHCEEEHHHHHTTSCTTTEEEEEEECCTTCEEEEEEC
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccceecHHHHhcCcCCCcCeEEEEECCCCCeeeeCCC
Confidence            34567899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cchhhcccceEEEEEecCCCCeEEEEecC
Q 015878          282 DEDISFLKRQYKMIIRSTTGPIDVYLLSK  310 (399)
Q Consensus       282 ~e~~~~~~~~yqI~LkS~~GPIdVyL~~~  310 (399)
                      ++       +|||||||++||||||||++
T Consensus        84 ~~-------~yqi~LkS~~GPIdV~L~~~  105 (106)
T 2aze_B           84 SE-------NFQISLKSKQGPIDVFLCPE  105 (106)
T ss_dssp             SS-------CEEEEEECSSSCCEEECCTT
T ss_pred             Cc-------ceEEEEECCCCCEEEEEeCC
Confidence            74       59999999999999999996
>1cf7_A Protein (transcription factor E2F-4); E2F, winged-helix, DNA-binding domain, cell cycle, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: a.4.5.17 Back     alignment and structure
>1cf7_B Protein (transcription factor DP-2); E2F, winged-helix, DNA-binding domain, cell cycle, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: a.4.5.17 Back     alignment and structure
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19 Back     alignment and structure
>2xvc_A ESCRT-III, SSO0910; cell cycle, cell division, cytokinesis, winged-helix; 2.15A {Sulfolobus solfataricus} Back     alignment and structure
>1oyi_A Double-stranded RNA-binding protein; (alpha+beta) helix-turn-helix, viral protein; NMR {Vaccinia virus} SCOP: a.4.5.19 Back     alignment and structure
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A Back     alignment and structure
>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A Back     alignment and structure
>1r7j_A Conserved hypothetical protein SSO10A; winged helix-turn-helix, two-stranded antiparallel coiled CO structural genomics, PSI; 1.47A {Sulfolobus solfataricus} SCOP: a.4.5.49 PDB: 1xsx_A Back     alignment and structure
>3r0a_A Putative transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.31A {Methanosarcina mazei} Back     alignment and structure
>3deu_A Transcriptional regulator SLYA; MARR, WING-helix, transcription regulator, activator, DNA-binding, repressor; HET: SAL; 2.30A {Salmonella typhimurium} SCOP: a.4.5.28 Back     alignment and structure
>3eco_A MEPR; mutlidrug efflux pump regulator winged helix-turn-helix motif, DNA-binding, transcription, transcription regulation; 2.40A {Staphylococcus aureus} SCOP: a.4.5.0 Back     alignment and structure
>3jw4_A Transcriptional regulator, MARR/EMRR family; DNA-binding protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Clostridium acetobutylicum} SCOP: a.4.5.0 Back     alignment and structure
>3qph_A TRMB, A global transcription regulator; transcriptional regulator; HET: SUC; 2.99A {Pyrococcus furiosus} Back     alignment and structure
>2oqg_A Possible transcriptional regulator, ARSR family P; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 1.54A {Rhodococcus SP} Back     alignment and structure
>3bro_A Transcriptional regulator; helix_TURN_helix, multiple antibiotic resistance protein (MA structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.04A {Oenococcus oeni} SCOP: a.4.5.28 Back     alignment and structure
>2htj_A P fimbrial regulatory protein KS71A; winged helix-turn-helix, PAP PILI, transcription activator; NMR {Escherichia coli} SCOP: a.4.5.73 Back     alignment and structure
>2a61_A Transcriptional regulator TM0710; APC4350, MCSG, midwest center for structural genomics, PSI, protein structure initiative, MARR; 1.80A {Thermotoga maritima} SCOP: a.4.5.28 Back     alignment and structure
>1ku9_A Hypothetical protein MJ223; putative transcription factor, homodimeric winged-helix fold, structural genomics, PSI; 2.80A {Methanocaldococcus jannaschii} SCOP: a.4.5.36 Back     alignment and structure
>2gxg_A 146AA long hypothetical transcriptional regulator; winged helix; 1.45A {Sulfolobus tokodaii} PDB: 2eb7_A 2yr2_A 3gez_A 3gf2_A* 3gfi_A 3gfm_A 3gfj_A 3gfl_A Back     alignment and structure
>1sfx_A Conserved hypothetical protein AF2008; structural genomics, HTH MOT protein structure initiative, midwest center for structural genomics; 1.55A {Archaeoglobus fulgidus} SCOP: a.4.5.50 Back     alignment and structure
>2fa5_A Transcriptional regulator MARR/EMRR family; multiple antibiotics resistance repressor, XCC structural genomics, X-RAY diffraction; 1.80A {Xanthomonas campestris} Back     alignment and structure
>3cuo_A Uncharacterized HTH-type transcriptional regulato; DNA-binding transcriptional regulator, structural genomics, MCSG; 2.00A {Escherichia coli K12} Back     alignment and structure
>2fbh_A Transcriptional regulator PA3341; MARR, transcription regulator, APC5857, structural genomics, protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28 Back     alignment and structure
>2kko_A Possible transcriptional regulatory protein (possibly ARSR-family); NESG, DNA-binding, transcription regulation, WHTH, homodimer; NMR {Mycobacterium bovis} PDB: 3gw2_A Back     alignment and structure
>3s2w_A Transcriptional regulator, MARR family; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 2.45A {Methanosarcina mazei} Back     alignment and structure
>1y0u_A Arsenical resistance operon repressor, putative; structural genomics, protein structure initiative, PSI; HET: MSE; 1.60A {Archaeoglobus fulgidus} SCOP: a.4.5.5 Back     alignment and structure
>2y75_A HTH-type transcriptional regulator CYMR; DNA binding protein; 2.00A {Bacillus subtilis} Back     alignment and structure
>2hr3_A Probable transcriptional regulator; MCSG, structural genomics, PSI-2, protein structure initiati midwest center for structural genomics; 2.40A {Pseudomonas aeruginosa} SCOP: a.4.5.28 Back     alignment and structure
>2qww_A Transcriptional regulator, MARR family; YP_013417.1, multiple antibiotic-resistance repressor (MARR) structural genomics; HET: MSE; 2.07A {Listeria monocytogenes str} Back     alignment and structure
>1on2_A Transcriptional regulator MNTR; helix-turn-helix, DNA-binding protein, metalloregulatory protein; 1.61A {Bacillus subtilis} SCOP: a.4.5.24 a.76.1.1 PDB: 2ev0_A 1on1_A 2ev5_A 2ev6_A* 2f5c_A 2f5d_A 2f5e_A 2f5f_A 2hyf_A* 2hyg_D 3r60_A* 3r61_A* Back     alignment and structure
>3g3z_A NMB1585, transcriptional regulator, MARR family; transcription factor, structur genomics, oxford protein production facility; 2.10A {Neisseria meningitidis serogroup B} Back     alignment and structure
>3u2r_A Regulatory protein MARR; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, helix-turn-helix; 2.20A {Planctomyces limnophilus} Back     alignment and structure
>3nrv_A Putative transcriptional regulator (MARR/EMRR FAM; PSI-2, protein structure initiati structural genomics; HET: MSE; 2.00A {Acinetobacter SP} Back     alignment and structure
>2d1h_A ST1889, 109AA long hypothetical transcriptional regulator; helix-turn-helix, intermolecular and intramolecular S-S bond structural genomics; 2.05A {Sulfolobus tokodaii} SCOP: a.4.5.50 Back     alignment and structure
>3oop_A LIN2960 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; 1.78A {Listeria innocua} Back     alignment and structure
>3jth_A Transcription activator HLYU; transcription factor, RTXA, DNA-binding, transcription regulation; 2.00A {Vibrio vulnificus} Back     alignment and structure
>3cjn_A Transcriptional regulator, MARR family; silicibacter pomeroy structural genomics, PSI-2, protein structure initiative; 1.95A {Silicibacter pomeroyi dss-3} Back     alignment and structure
>2frh_A SARA, staphylococcal accessory regulator A; winged-helix protein, divalent metal binding, transcription; 2.50A {Staphylococcus aureus} SCOP: a.4.5.28 PDB: 2fnp_A 1fzp_D Back     alignment and structure
>2eth_A Transcriptional regulator, putative, MAR family; MARR family, structural genomics, joint center for structura genomics, JCSG; 2.30A {Thermotoga maritima} SCOP: a.4.5.28 Back     alignment and structure
>3bja_A Transcriptional regulator, MARR family, putative; NP_978771.1, putative MARR-like transcription regulator, MAR structural genomics; 2.38A {Bacillus cereus} Back     alignment and structure
>2x4h_A Hypothetical protein SSO2273; transcription; 2.30A {Sulfolobus solfataricus} Back     alignment and structure
>1lj9_A Transcriptional regulator SLYA; HTH DNA binding protein, structural genomics, PSI, protein structure initiative; 1.60A {Enterococcus faecalis} SCOP: a.4.5.28 Back     alignment and structure
>3bpv_A Transcriptional regulator; MARR, DNA binding, transcription factor, winged helix motif, DNA-binding; 1.40A {Methanobacterium thermoautotrophicum} PDB: 3bpx_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 399
d2azeb1101 e.63.1.2 (B:201-301) Transcription factor E2F1 {Hu 2e-33
d1cf7a_67 a.4.5.17 (A:) Cell cycle transcription factor E2F- 3e-30
d1cf7b_82 a.4.5.17 (B:) Cell cycle transcription factor DP-2 4e-05
>d2azeb1 e.63.1.2 (B:201-301) Transcription factor E2F1 {Human (Homo sapiens) [TaxId: 9606]} Length = 101 Back     information, alignment and structure

class: Multi-domain proteins (alpha and beta)
fold: E2F-DP heterodimerization region
superfamily: E2F-DP heterodimerization region
family: E2F dimerization segment
domain: Transcription factor E2F1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  118 bits (297), Expect = 2e-33
 Identities = 25/106 (23%), Positives = 53/106 (50%), Gaps = 7/106 (6%)

Query: 205 QVARLKAEIESLHAEECRIDDSIREKQELIRTLEENENHQKYMFLTEEDIASLPCFQNQT 264
           ++  L  ++  L   E ++D  +      +R L E+ + Q+  ++T +D+ S+     Q 
Sbjct: 2   RLEGLTQDLRQLQESEQQLDHLMNICTTQLRLLSEDTDSQRLAYVTCQDLRSIADPAEQM 61

Query: 265 LIAIKAPQASYIEVPDPDEDISFLKRQYKMIIRSTTGPIDVYLLSK 310
           ++ IKAP  + ++  D  E        +++ ++S  GPIDV+L  +
Sbjct: 62  VMVIKAPPETQLQAVDSSE-------NFQISLKSKQGPIDVFLCPE 100
>d1cf7a_ a.4.5.17 (A:) Cell cycle transcription factor E2F-4 {Human (Homo sapiens) [TaxId: 9606]} Length = 67 Back     information, alignment and structure
>d1cf7b_ a.4.5.17 (B:) Cell cycle transcription factor DP-2 {Human (Homo sapiens) [TaxId: 9606]} Length = 82 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query399
d2azeb1101 Transcription factor E2F1 {Human (Homo sapiens) [T 100.0
d1cf7a_67 Cell cycle transcription factor E2F-4 {Human (Homo 99.95
d1cf7b_82 Cell cycle transcription factor DP-2 {Human (Homo 98.76
d1sfxa_109 Hypothetical protein AF2008 {Archaeoglobus fulgidu 93.41
d1j5ya165 Putative transcriptional regulator TM1602, N-termi 91.95
d1ku9a_151 DNA-binding protein Mj223 {Archaeon Methanococcus 88.92
d1mkma175 Transcriptional regulator IclR, N-terminal domain 88.22
d2a61a1139 Transcriptional regulator TM0710 {Thermotoga marit 87.53
d1biaa163 Biotin repressor, N-terminal domain {Escherichia c 87.17
d2d1ha1109 Hypothetical transcriptional regulator ST1889 {Sul 84.48
d1tw3a185 Carminomycin 4-O-methyltransferase {Streptomyces p 82.9
d2fbha1137 Transcriptional regulator PA3341 {Pseudomonas aeru 81.9
d1p4xa1125 Staphylococcal accessory regulator A homolog, SarS 81.7
d3broa1135 Transcriptional regulator OEOE1854 {Oenococcus oen 80.66
>d2azeb1 e.63.1.2 (B:201-301) Transcription factor E2F1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: Multi-domain proteins (alpha and beta)
fold: E2F-DP heterodimerization region
superfamily: E2F-DP heterodimerization region
family: E2F dimerization segment
domain: Transcription factor E2F1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6.9e-38  Score=261.27  Aligned_cols=100  Identities=25%  Similarity=0.476  Sum_probs=96.1

Q ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhhcccccccccHhhhccCCCCCCceEEEEeCCCCceEEecCCcch
Q 015878          205 QVARLKAEIESLHAEECRIDDSIREKQELIRTLEENENHQKYMFLTEEDIASLPCFQNQTLIAIKAPQASYIEVPDPDED  284 (399)
Q Consensus       205 ~~~~Lk~El~~L~~~E~~LD~lI~~~~q~Lr~Lted~~n~~~aYVT~eDI~~l~~f~~qTvIAIKAP~gT~LEVPdP~e~  284 (399)
                      +++.|++|+++|.++|+.||++|++|+++|++|++|++|++|+|||++||++|++|+++||||||||+||+||||+|++ 
T Consensus         2 r~~~L~~El~~L~~~E~~LD~li~~~~~~L~~lted~~n~k~ayVT~~Di~~i~~f~~~tviaIkAP~gT~LeVPdp~~-   80 (101)
T d2azeb1           2 RLEGLTQDLRQLQESEQQLDHLMNICTTQLRLLSEDTDSQRLAYVTCQDLRSIADPAEQMVMVIKAPPETQLQAVDSSE-   80 (101)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHCEEEHHHHHTTSCTTTEEEEEEECCTTCEEEEEECSS-
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhccCCccCHHHHhhCCCcccceEEEEECCCCCEEeecCCCc-
Confidence            4678999999999999999999999999999999999999999999999999999999999999999999999999975 


Q ss_pred             hhcccceEEEEEecCCCCeEEEEecCC
Q 015878          285 ISFLKRQYKMIIRSTTGPIDVYLLSKY  311 (399)
Q Consensus       285 ~~~~~~~yqI~LkS~~GPIdVyL~~~~  311 (399)
                            +|+|||||++||||||||++.
T Consensus        81 ------~yqi~lkS~~GpI~V~Lc~~e  101 (101)
T d2azeb1          81 ------NFQISLKSKQGPIDVFLCPEE  101 (101)
T ss_dssp             ------CEEEEEECSSSCCEEECCTTC
T ss_pred             ------cEEEEEecCCCCEEEEEeCCC
Confidence                  599999999999999999863
>d1cf7a_ a.4.5.17 (A:) Cell cycle transcription factor E2F-4 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1cf7b_ a.4.5.17 (B:) Cell cycle transcription factor DP-2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1sfxa_ a.4.5.50 (A:) Hypothetical protein AF2008 {Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1j5ya1 a.4.5.1 (A:3-67) Putative transcriptional regulator TM1602, N-terminal domain {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1ku9a_ a.4.5.36 (A:) DNA-binding protein Mj223 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
>d1mkma1 a.4.5.33 (A:1-75) Transcriptional regulator IclR, N-terminal domain {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d2a61a1 a.4.5.28 (A:5-143) Transcriptional regulator TM0710 {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1biaa1 a.4.5.1 (A:1-63) Biotin repressor, N-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2d1ha1 a.4.5.50 (A:1-109) Hypothetical transcriptional regulator ST1889 {Sulfolobus tokodaii [TaxId: 111955]} Back     information, alignment and structure
>d1tw3a1 a.4.5.29 (A:14-98) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]} Back     information, alignment and structure
>d2fbha1 a.4.5.28 (A:8-144) Transcriptional regulator PA3341 {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure
>d1p4xa1 a.4.5.28 (A:1-125) Staphylococcal accessory regulator A homolog, SarS {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure
>d3broa1 a.4.5.28 (A:3-137) Transcriptional regulator OEOE1854 {Oenococcus oeni [TaxId: 1247]} Back     information, alignment and structure