Citrus Sinensis ID: 015884

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------40
MASALETLCGQAFGAGQVELLGVYMQRSILILFVTCIFLLPLYIFATPILKLLGQRDDIAEFAGTFAIQVIPQMFSLAFNFPSQKFLQAQSKVGVLAWIGLAAFVVHIGMLYFFIHMLNWGTAGAAAAYNISALGISIGQMIYVVRYCKDGWKGLSWLAFKDIWGFVRLSIASAIMLCLEIWYFMTIIVLTGHLEDPVIAVGSLSICMNINGWEGMLFLGINAAISVRVSNELGSSHPRAAKYSVIITTTQSLFIGIFCAIVILVTKDDFSIIFTDSEEMRKAVADLASLLGITMLLNSVQPVISGVAVGGGWQALVAYINLFCYYVVGLPFGFLLGYKLKFGVQGIWIGMICGTLLQTLILLYIVYKTNWNKEVEQASERMRKWGAGQDRRSDSDTT
cccccHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHccccccccccccc
cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHccccHcccccccHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEcHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHccHHHHcHHHccccHHHHHHHHEHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHcccccccccccccc
MASALETLCGQAFGAGQVELLGVYMQRSILILFVTCIFLLPLYIFATPILKLLGQRDDIAEFAGTFAIQVIPQMFSlafnfpsqkflQAQSKVGVLAWIGLAAFVVHIGMLYFFIHMLNWGTAGAAAAYNISALGISIGQMIYVVRYCKDGWKGLSWLAFKDIWGFVRLSIASAIMLCLEIWYFMTIIVLTghledpviaVGSLSICMNINGWEGMLFLGINAAISVRVsnelgsshpraakYSVIITTTQSLFIGIFCAIVILVtkddfsiiftDSEEMRKAVADLASLLGITMLLNSVQPVISGVAVGGGWQALVAYINLFCYYVVGLPFGFLLGYKLKFGVQGIWIGMICGTLLQTLILLYIVYKTNWNKEVEQASERMRKwgagqdrrsdsdtt
MASALETLCGQAFGAGQVELLGVYMQRSILILFVTCIFLLPLYIFATPILKLLGQRDDIAEFAGTFAIQVIPQMFSLAFNFPSQKFLQAQSKVGVLAWIGLAAFVVHIGMLYFFIHMLNWGTAGAAAAYNISALGISIGQMIYVVRYCKDGWKGLSWLAFKDIWGFVRLSIASAIMLCLEIWYFMTIIVLTGHLEDPVIAVGSLSICMNINGWEGMLFLGINAAISVRVSNELGSSHPRAAKYSVIITTTQSLFIGIFCAIVILVTKDDFSIIFTDSEEMRKAVADLASLLGITMLLNSVQPVISGVAVGGGWQALVAYINLFCYYVVGLPFGFLLGYKLKFGVQGIWIGMICGTLLQTLILLYIVYKTNWNKEVEQASErmrkwgagqdrrsdsdtt
MASALETLCGQAFGAGQVELLGVYMQRSILILFVTCIFLLPLYIFATPILKLLGQRDDIAEFAGTFAIQVIPQMFSLAFNFPSQKFLQAQSKVGVLAWIGLAAFVVHIGMLYFFIHMLNWGTAGAAAAYNISALGISIGQMIYVVRYCKDGWKGLSWLAFKDIWGFVRLSIASAIMLCLEIWYFMTIIVLTGHLEDPVIAVGSLSICMNINGWEGMLFLGINAAISVRVSNELGSSHPRAAKYSVIITTTQSLFIGIFCAIVILVTKDDFSIIFTDSEEMRKAVADLASLLGITMLLNSVQPVISGVAVGGGWQALVAYINLFCYYVVGLPFGFLLGYKLKFGVQGIWIGMICGTLLQTLILLYIVYKTNWNKEVEQASERMRKWGAGQDRRSDSDTT
*****ETLCGQAFGAGQVELLGVYMQRSILILFVTCIFLLPLYIFATPILKLLGQRDDIAEFAGTFAIQVIPQMFSLAFNFPSQKFLQAQSKVGVLAWIGLAAFVVHIGMLYFFIHMLNWGTAGAAAAYNISALGISIGQMIYVVRYCKDGWKGLSWLAFKDIWGFVRLSIASAIMLCLEIWYFMTIIVLTGHLEDPVIAVGSLSICMNINGWEGMLFLGINAAISVRVSNELGSSHPRAAKYSVIITTTQSLFIGIFCAIVILVTKDDFSIIFTDSEEMRKAVADLASLLGITMLLNSVQPVISGVAVGGGWQALVAYINLFCYYVVGLPFGFLLGYKLKFGVQGIWIGMICGTLLQTLILLYIVYKTNWNK*************************
MASALETLCGQAFGAGQVELLGVYMQRSILILFVTCIFLLPLYIFATPILKLLGQRDDIAEFAGTFAIQVIPQMFSLAFNFPSQKFLQAQSKVGVLAWIGLAAFVVHIGMLYFFIHMLNWGTAGAAAAYNISALGISIGQMIYVVRYCKDGWKGLSWLAFKDIWGFVRLSIASAIMLCLEIWYFMTIIVLTGHLEDPVIAVGSLSICMNINGWEGMLFLGINAAISVRVSNELGSSHPRAAKYSVIITTTQSLFIGIFCAIVILVTKDDFSIIFTDSEEMRKAVADLASLLGITMLLNSVQPVISGVAVGGGWQALVAYINLFCYYVVGLPFGFLLGYKLKFGVQGIWIGMICGTLLQTLILLYIVYKTNWNKEVEQA********************
MASALETLCGQAFGAGQVELLGVYMQRSILILFVTCIFLLPLYIFATPILKLLGQRDDIAEFAGTFAIQVIPQMFSLAFNFPSQKFLQAQSKVGVLAWIGLAAFVVHIGMLYFFIHMLNWGTAGAAAAYNISALGISIGQMIYVVRYCKDGWKGLSWLAFKDIWGFVRLSIASAIMLCLEIWYFMTIIVLTGHLEDPVIAVGSLSICMNINGWEGMLFLGINAAISVRVSNELGSSHPRAAKYSVIITTTQSLFIGIFCAIVILVTKDDFSIIFTDSEEMRKAVADLASLLGITMLLNSVQPVISGVAVGGGWQALVAYINLFCYYVVGLPFGFLLGYKLKFGVQGIWIGMICGTLLQTLILLYIVYKTNWNKEVEQASERM****************
**SALETLCGQAFGAGQVELLGVYMQRSILILFVTCIFLLPLYIFATPILKLLGQRDDIAEFAGTFAIQVIPQMFSLAFNFPSQKFLQAQSKVGVLAWIGLAAFVVHIGMLYFFIHMLNWGTAGAAAAYNISALGISIGQMIYVVRYCKDGWKGLSWLAFKDIWGFVRLSIASAIMLCLEIWYFMTIIVLTGHLEDPVIAVGSLSICMNINGWEGMLFLGINAAISVRVSNELGSSHPRAAKYSVIITTTQSLFIGIFCAIVILVTKDDFSIIFTDSEEMRKAVADLASLLGITMLLNSVQPVISGVAVGGGWQALVAYINLFCYYVVGLPFGFLLGYKLKFGVQGIWIGMICGTLLQTLILLYIVYKTNWNKEVEQASERMRKW*************
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooo
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MASALETLCGQAFGAGQVELLGVYMQRSILILFVTCIFLLPLYIFATPILKLLGQRDDIAEFAGTFAIQVIPQMFSLAFNFPSQKFLQAQSKVGVLAWIGLAAFVVHIGMLYFFIHMLNWGTAGAAAAYNISALGISIGQMIYVVRYCKDGWKGLSWLAFKDIWGFVRLSIASAIMLCLEIWYFMTIIVLTGHLEDPVIAVGSLSICMNINGWEGMLFLGINAAISVRVSNELGSSHPRAAKYSVIITTTQSLFIGIFCAIVILVTKDDFSIIFTDSEEMRKAVADLASLLGITMLLNSVQPVISGVAVGGGWQALVAYINLFCYYVVGLPFGFLLGYKLKFGVQGIWIGMICGTLLQTLILLYIVYKTNWNKEVEQASERMRKWGAGQDRRSDSDTT
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query398 2.2.26 [Sep-21-2011]
Q9LYT3507 Protein TRANSPARENT TESTA no no 0.992 0.779 0.423 8e-90
Q9LUH3469 MATE efflux family protei no no 0.937 0.795 0.346 1e-55
Q9LUH2477 MATE efflux family protei no no 0.937 0.781 0.346 6e-55
Q9SIA3476 MATE efflux family protei no no 0.959 0.802 0.320 4e-54
Q9SIA4476 MATE efflux family protei no no 0.957 0.800 0.332 2e-52
Q8GXM8476 MATE efflux family protei no no 0.959 0.802 0.307 6e-51
Q9SIA5476 MATE efflux family protei no no 0.957 0.800 0.316 1e-50
Q8RWF5483 MATE efflux family protei no no 0.937 0.772 0.307 2e-47
Q9SIA1477 MATE efflux family protei no no 0.937 0.781 0.305 3e-46
A1L1P9590 Multidrug and toxin extru yes no 0.942 0.635 0.309 1e-41
>sp|Q9LYT3|TT12_ARATH Protein TRANSPARENT TESTA 12 OS=Arabidopsis thaliana GN=TT12 PE=2 SV=1 Back     alignment and function desciption
 Score =  330 bits (847), Expect = 8e-90,   Method: Compositional matrix adjust.
 Identities = 168/397 (42%), Positives = 254/397 (63%), Gaps = 2/397 (0%)

Query: 1   MASALETLCGQAFGAGQVELLGVYMQRSILILFVTCIFLLPLYIFATPILKLLGQRDDIA 60
           MASA++T+CGQA+GA Q   +G+  QR++++     +FL  LY ++ PILK +GQ   IA
Sbjct: 109 MASAVQTVCGQAYGARQYSSMGIICQRAMVLHLAAAVFLTFLYWYSGPILKTMGQSVAIA 168

Query: 61  EFAGTFAIQVIPQMFSLAFNFPSQKFLQAQSKVGVLAWIGLAAFVVHIGMLYFFIHMLNW 120
                FA  +IPQ+++ A   P Q+FLQAQ+ V  LA++ L  F++H  + +   ++L++
Sbjct: 169 HEGQIFARGMIPQIYAFALACPMQRFLQAQNIVNPLAYMSLGVFLLHTLLTWLVTNVLDF 228

Query: 121 GTAGAAAAYNIS--ALGISIGQMIYVVRYCKDGWKGLSWLAFKDIWGFVRLSIASAIMLC 178
           G  GAA   + S   L    G  I +   CK+ W G S  AF+ IW + +L++ASA+MLC
Sbjct: 229 GLLGAALILSFSWWLLVAVNGMYILMSPNCKETWTGFSTRAFRGIWPYFKLTVASAVMLC 288

Query: 179 LEIWYFMTIIVLTGHLEDPVIAVGSLSICMNINGWEGMLFLGINAAISVRVSNELGSSHP 238
           LEIWY   +++++G L +P I++ ++SICM    W+    LG++AAISVRVSNELG+ +P
Sbjct: 289 LEIWYNQGLVIISGLLSNPTISLDAISICMYYLNWDMQFMLGLSAAISVRVSNELGAGNP 348

Query: 239 RAAKYSVIITTTQSLFIGIFCAIVILVTKDDFSIIFTDSEEMRKAVADLASLLGITMLLN 298
           R A  SV++    ++ I     +++LV +   S  FT   E+  AV+DL  LL +++ LN
Sbjct: 349 RVAMLSVVVVNITTVLISSVLCVIVLVFRVGLSKAFTSDAEVIAAVSDLFPLLAVSIFLN 408

Query: 299 SVQPVISGVAVGGGWQALVAYINLFCYYVVGLPFGFLLGYKLKFGVQGIWIGMICGTLLQ 358
            +QP++SGVA+G GWQA+VAY+NL  YYV+GLP G +LG+K   GV GIW GMI G +LQ
Sbjct: 409 GIQPILSGVAIGSGWQAVVAYVNLVTYYVIGLPIGCVLGFKTSLGVAGIWWGMIAGVILQ 468

Query: 359 TLILLYIVYKTNWNKEVEQASERMRKWGAGQDRRSDS 395
           TL L+ +  KTNW  EVE A++R++         +++
Sbjct: 469 TLTLIVLTLKTNWTSEVENAAQRVKTSATENQEMANA 505
May be involved in vacuolar transport of flavonoids.
Arabidopsis thaliana (taxid: 3702)
>sp|Q9LUH3|LAL5_ARATH MATE efflux family protein LAL5 OS=Arabidopsis thaliana GN=LAL5 PE=2 SV=1 Back     alignment and function description
>sp|Q9LUH2|ALF5_ARATH MATE efflux family protein ALF5 OS=Arabidopsis thaliana GN=ALF5 PE=2 SV=1 Back     alignment and function description
>sp|Q9SIA3|MATE6_ARATH MATE efflux family protein 6 OS=Arabidopsis thaliana GN=DTXL2 PE=3 SV=2 Back     alignment and function description
>sp|Q9SIA4|MATE5_ARATH MATE efflux family protein 5 OS=Arabidopsis thaliana GN=DTXL1 PE=3 SV=1 Back     alignment and function description
>sp|Q8GXM8|MATE7_ARATH MATE efflux family protein 7 OS=Arabidopsis thaliana GN=DTXL3 PE=2 SV=1 Back     alignment and function description
>sp|Q9SIA5|DTX1_ARATH MATE efflux family protein DTX1 OS=Arabidopsis thaliana GN=DTX1 PE=2 SV=1 Back     alignment and function description
>sp|Q8RWF5|MATE9_ARATH MATE efflux family protein 9 OS=Arabidopsis thaliana GN=DTXL5 PE=2 SV=1 Back     alignment and function description
>sp|Q9SIA1|MATE8_ARATH MATE efflux family protein 8 OS=Arabidopsis thaliana GN=DTXL4 PE=3 SV=2 Back     alignment and function description
>sp|A1L1P9|S47A1_DANRE Multidrug and toxin extrusion protein 1 OS=Danio rerio GN=slc47a1 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query398
224067910 525 predicted protein [Populus trichocarpa] 0.969 0.735 0.821 0.0
255583905 551 multidrug resistance pump, putative [Ric 0.972 0.702 0.795 0.0
42566185 542 mate efflux domain-containing protein [A 0.982 0.721 0.767 1e-178
28393585 514 unknown protein [Arabidopsis thaliana] 0.982 0.760 0.764 1e-177
297814299 542 mate efflux family protein [Arabidopsis 0.982 0.721 0.762 1e-177
297745360 950 unnamed protein product [Vitis vinifera] 0.947 0.396 0.771 1e-174
449441448491 PREDICTED: protein TRANSPARENT TESTA 12- 0.997 0.808 0.751 1e-173
449522622491 PREDICTED: protein TRANSPARENT TESTA 12- 0.997 0.808 0.748 1e-172
356530062465 PREDICTED: protein TRANSPARENT TESTA 12- 0.977 0.836 0.733 1e-165
356566908 584 PREDICTED: protein TRANSPARENT TESTA 12- 0.972 0.662 0.733 1e-163
>gi|224067910|ref|XP_002302594.1| predicted protein [Populus trichocarpa] gi|222844320|gb|EEE81867.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  657 bits (1694), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 317/386 (82%), Positives = 351/386 (90%)

Query: 1   MASALETLCGQAFGAGQVELLGVYMQRSILILFVTCIFLLPLYIFATPILKLLGQRDDIA 60
           M SALETLCGQAFGAGQV LLGVYMQRS +ILFV C+FLLPLY+FATP+LKLLGQR DIA
Sbjct: 140 MGSALETLCGQAFGAGQVNLLGVYMQRSWIILFVACLFLLPLYVFATPVLKLLGQRKDIA 199

Query: 61  EFAGTFAIQVIPQMFSLAFNFPSQKFLQAQSKVGVLAWIGLAAFVVHIGMLYFFIHMLNW 120
           E AG F IQVIPQMFSLA NFP+QKFLQAQSKVGVLAWIGLAA ++HIG+LY FI++  W
Sbjct: 200 ELAGKFTIQVIPQMFSLAINFPTQKFLQAQSKVGVLAWIGLAALIIHIGVLYLFINVFKW 259

Query: 121 GTAGAAAAYNISALGISIGQMIYVVRYCKDGWKGLSWLAFKDIWGFVRLSIASAIMLCLE 180
           G AGAA AY+IS+ GI++ Q+ YVV +CKDGWKGLSWLAFKDIW FVRLSIASA+MLCLE
Sbjct: 260 GLAGAAIAYDISSWGIALAQLAYVVGWCKDGWKGLSWLAFKDIWAFVRLSIASAVMLCLE 319

Query: 181 IWYFMTIIVLTGHLEDPVIAVGSLSICMNINGWEGMLFLGINAAISVRVSNELGSSHPRA 240
           IWYFMTIIVLTGHLEDP+IAVGSLSICMNINGWEGMLF+GINAAISVRVSNELGS HPRA
Sbjct: 320 IWYFMTIIVLTGHLEDPIIAVGSLSICMNINGWEGMLFIGINAAISVRVSNELGSGHPRA 379

Query: 241 AKYSVIITTTQSLFIGIFCAIVILVTKDDFSIIFTDSEEMRKAVADLASLLGITMLLNSV 300
           AKY+VI+T  +SL +GI CA++IL T++ F+IIFT SEEMRKAVA+LA LLGITM+LNS+
Sbjct: 380 AKYAVIVTCIESLLVGILCAVIILATRNHFAIIFTASEEMRKAVANLAYLLGITMILNSI 439

Query: 301 QPVISGVAVGGGWQALVAYINLFCYYVVGLPFGFLLGYKLKFGVQGIWIGMICGTLLQTL 360
           QPVISGVAVGGGWQALVAYINLFCYYVVGLP GFLLGYK K  V+GIWIGMI GT LQTL
Sbjct: 440 QPVISGVAVGGGWQALVAYINLFCYYVVGLPLGFLLGYKTKLHVKGIWIGMIIGTCLQTL 499

Query: 361 ILLYIVYKTNWNKEVEQASERMRKWG 386
           IL++IVYKTNWNKEVEQASERMRKWG
Sbjct: 500 ILVFIVYKTNWNKEVEQASERMRKWG 525

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255583905|ref|XP_002532702.1| multidrug resistance pump, putative [Ricinus communis] gi|223527569|gb|EEF29687.1| multidrug resistance pump, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|42566185|ref|NP_567173.3| mate efflux domain-containing protein [Arabidopsis thaliana] gi|332656464|gb|AEE81864.1| mate efflux domain-containing protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|28393585|gb|AAO42212.1| unknown protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297814299|ref|XP_002875033.1| mate efflux family protein [Arabidopsis lyrata subsp. lyrata] gi|297320870|gb|EFH51292.1| mate efflux family protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|297745360|emb|CBI40440.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|449441448|ref|XP_004138494.1| PREDICTED: protein TRANSPARENT TESTA 12-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449522622|ref|XP_004168325.1| PREDICTED: protein TRANSPARENT TESTA 12-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|356530062|ref|XP_003533603.1| PREDICTED: protein TRANSPARENT TESTA 12-like [Glycine max] Back     alignment and taxonomy information
>gi|356566908|ref|XP_003551667.1| PREDICTED: protein TRANSPARENT TESTA 12-like [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query398
TAIR|locus:2126036542 AT4G00350 "AT4G00350" [Arabido 0.982 0.721 0.767 3.3e-166
TAIR|locus:2015368484 AT1G47530 "AT1G47530" [Arabido 0.969 0.797 0.565 4.2e-118
TAIR|locus:2144421498 AT5G38030 "AT5G38030" [Arabido 0.969 0.775 0.519 1.8e-112
TAIR|locus:2088822500 AT3G26590 "AT3G26590" [Arabido 0.969 0.772 0.514 3.6e-112
TAIR|locus:2010401522 RSH2 "AT1G12950" [Arabidopsis 0.969 0.739 0.509 4.2e-111
TAIR|locus:2028115515 AT1G23300 "AT1G23300" [Arabido 0.992 0.766 0.494 5.5e-109
TAIR|locus:2089955506 AT3G21690 "AT3G21690" [Arabido 0.967 0.760 0.488 1.7e-100
TAIR|locus:2036848501 AT1G61890 "AT1G61890" [Arabido 0.967 0.768 0.480 1.7e-98
TAIR|locus:2027322503 AT1G11670 "AT1G11670" [Arabido 0.967 0.765 0.480 7.4e-98
TAIR|locus:2172477491 AT5G44050 "AT5G44050" [Arabido 0.984 0.798 0.494 1.2e-97
TAIR|locus:2126036 AT4G00350 "AT4G00350" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1617 (574.3 bits), Expect = 3.3e-166, P = 3.3e-166
 Identities = 300/391 (76%), Positives = 347/391 (88%)

Query:     1 MASALETLCGQAFGAGQVELLGVYMQRSILILFVTCIFLLPLYIFATPILKLLGQRDDIA 60
             MASALETLCGQAFGAGQ+++LGVYMQRS LIL  T + LLPLYI+ATP+L LLGQ  +IA
Sbjct:   146 MASALETLCGQAFGAGQMDMLGVYMQRSWLILLGTSVCLLPLYIYATPLLILLGQEPEIA 205

Query:    61 EFAGTFAIQVIPQMFSLAFNFPSQKFLQAQSKVGVLAWIGLAAFVVHIGMLYFFIHMLNW 120
             E +G F  Q+IPQMF+LA NFP+QKFLQ+QSKVG++AWIG  A  +HI +LY FI++  W
Sbjct:   206 EISGKFTTQIIPQMFALAINFPTQKFLQSQSKVGIMAWIGFFALTLHIFILYLFINVFKW 265

Query:   121 GTAGAAAAYNISALGISIGQMIYVVRYCKDGWKGLSWLAFKDIWGFVRLSIASAIMLCLE 180
             G  GAAAA+++SA GI+I Q++YVV +CKDGWKGLSWLAF+D+W F++LS ASA+MLCLE
Sbjct:   266 GLNGAAAAFDVSAWGIAIAQVVYVVGWCKDGWKGLSWLAFQDVWPFLKLSFASAVMLCLE 325

Query:   181 IWYFMTIIVLTGHLEDPVIAVGSLSICMNINGWEGMLFLGINAAISVRVSNELGSSHPRA 240
             IWYFMTIIVLTGHLEDPVIAVGSLSICMNINGWEGMLF+GINAAISVRVSNELGS HPRA
Sbjct:   326 IWYFMTIIVLTGHLEDPVIAVGSLSICMNINGWEGMLFIGINAAISVRVSNELGSGHPRA 385

Query:   241 AKYSVIITTTQSLFIGIFCAIVILVTKDDFSIIFTDSEEMRKAVADLASLLGITMLLNSV 300
             AKYSVI+T  +SL IG+ CAIVIL+T+DDF++IFT+SEEMRKAVADLA LLGITM+LNS+
Sbjct:   386 AKYSVIVTVIESLVIGVVCAIVILITRDDFAVIFTESEEMRKAVADLAYLLGITMILNSL 445

Query:   301 QPVISGVAVGGGWQALVAYINLFCYYVVGLPFGFLLGYKLKFGVQGIWIGMICGTLLQTL 360
             QPVISGVAVGGGWQA VAYINLFCYY  GLP GFLLGYK   GVQGIWIGMICGT LQTL
Sbjct:   446 QPVISGVAVGGGWQAPVAYINLFCYYAFGLPLGFLLGYKTSLGVQGIWIGMICGTSLQTL 505

Query:   361 ILLYIVYKTNWNKEVEQASERMRKWGAGQDR 391
             ILLY++Y TNWNKEVEQASERM++WGAG ++
Sbjct:   506 ILLYMIYITNWNKEVEQASERMKQWGAGYEK 536
GO:0005215 "transporter activity" evidence=ISS
GO:0005886 "plasma membrane" evidence=ISM
GO:0006855 "drug transmembrane transport" evidence=IEA
GO:0015238 "drug transmembrane transporter activity" evidence=IEA
GO:0015297 "antiporter activity" evidence=IEA;ISS
GO:0016020 "membrane" evidence=IEA;ISS
GO:0055085 "transmembrane transport" evidence=IEA
GO:0009860 "pollen tube growth" evidence=RCA
GO:0030048 "actin filament-based movement" evidence=RCA
TAIR|locus:2015368 AT1G47530 "AT1G47530" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2144421 AT5G38030 "AT5G38030" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2088822 AT3G26590 "AT3G26590" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2010401 RSH2 "AT1G12950" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2028115 AT1G23300 "AT1G23300" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2089955 AT3G21690 "AT3G21690" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2036848 AT1G61890 "AT1G61890" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2027322 AT1G11670 "AT1G11670" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2172477 AT5G44050 "AT5G44050" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
gw1.II.1185.1
hypothetical protein (525 aa)
(Populus trichocarpa)
Predicted Functional Partners:
estExt_Genewise1_v1.C_LG_IX1583
hypothetical protein (460 aa)
  •     0.455
estExt_fgenesh4_pg.C_LG_IX0426
hypothetical protein (553 aa)
  •     0.416

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query398
cd13132436 cd13132, MATE_eukaryotic, Eukaryotic members of th 1e-141
COG0534455 COG0534, NorM, Na+-driven multidrug efflux pump [D 6e-40
TIGR00797342 TIGR00797, matE, putative efflux protein, MATE fam 2e-37
cd13131435 cd13131, MATE_NorM_like, Subfamily of the multidru 2e-33
cd13137432 cd13137, MATE_NorM_like, Subfamily of the multidru 5e-28
cd12082420 cd12082, MATE_like, Multidrug and toxic compound e 3e-25
pfam01554161 pfam01554, MatE, MatE 2e-24
cd13138431 cd13138, MATE_yoeA_like, Subfamily of the multidru 3e-20
cd13134438 cd13134, MATE_like_8, Uncharacterized subfamily of 4e-19
PRK01766456 PRK01766, PRK01766, multidrug efflux protein; Revi 2e-18
cd13133438 cd13133, MATE_like_7, Uncharacterized subfamily of 1e-16
cd13143426 cd13143, MATE_MepA_like, Subfamily of the multidru 3e-16
pfam01554161 pfam01554, MatE, MatE 2e-15
cd13142444 cd13142, MATE_like_12, Uncharacterized subfamily o 6e-15
cd13136424 cd13136, MATE_DinF_like, DinF and similar proteins 1e-09
cd13139448 cd13139, MATE_like_14, Uncharacterized subfamily o 6e-08
cd13147441 cd13147, MATE_MJ0709_like, Uncharacterized subfami 2e-07
cd13146433 cd13146, MATE_like_6, Uncharacterized subfamily of 3e-07
cd13135429 cd13135, MATE_like_9, Uncharacterized subfamily of 1e-06
cd13124434 cd13124, MATE_SpoVB_like, Stage V sporulation prot 3e-05
cd13140435 cd13140, MATE_like_1, Uncharacterized subfamily of 6e-05
PRK00187464 PRK00187, PRK00187, multidrug efflux protein NorA; 2e-04
cd13134 438 cd13134, MATE_like_8, Uncharacterized subfamily of 4e-04
cd12082420 cd12082, MATE_like, Multidrug and toxic compound e 5e-04
COG0534 455 COG0534, NorM, Na+-driven multidrug efflux pump [D 0.004
>gnl|CDD|240537 cd13132, MATE_eukaryotic, Eukaryotic members of the multidrug and toxic compound extrusion (MATE) family Back     alignment and domain information 
 Score =  407 bits (1049), Expect = e-141
 Identities = 160/379 (42%), Positives = 242/379 (63%), Gaps = 3/379 (0%)

Query: 1   MASALETLCGQAFGAGQVELLGVYMQRSILILFVTCIFLLPLYIFATPILKLLGQRDDIA 60
           +ASAL+TLCGQAFGA   +L+GVY+QR+++IL + C+ +  L++   PIL LLGQ  +IA
Sbjct: 59  LASALDTLCGQAFGAKNYKLVGVYLQRALVILLLCCVPISLLWLNTEPILLLLGQDPEIA 118

Query: 61  EFAGTFAIQVIPQMFSLAFNFPSQKFLQAQSKVGVLAWIGLAAFVVHIGMLYFFIHMLNW 120
             AG +   +IP +F+ A   P +++LQAQ  V  L +I L A +++I + Y  + +L  
Sbjct: 119 RLAGEYLRWLIPGLFAYALFEPLKRYLQAQGIVLPLVYISLVALLLNILLNYLLVFVLGL 178

Query: 121 GTAGAAAAYNISALGISIGQMIYV--VRYCKDGWKGLSWLAFKDIWGFVRLSIASAIMLC 178
           G  GAA A +IS   I +  ++Y+   +  K  W G S  AF+    F++L+I SA+MLC
Sbjct: 179 GFIGAALATSISYWLIVVLLLLYIFFSKGHKATWGGFSREAFRGWGPFLKLAIPSALMLC 238

Query: 179 LEIWYFMTIIVLTGHLEDPVIAVGSLSICMNINGWEGMLFLGINAAISVRVSNELGSSHP 238
           LE W F  +++L G L    +A+ + SIC+       M+ LGI+ A SVRV NELG+ +P
Sbjct: 239 LEWWAFEILVLLAGLLP-GTVALAAQSICLTTTSLLYMIPLGISIAASVRVGNELGAGNP 297

Query: 239 RAAKYSVIITTTQSLFIGIFCAIVILVTKDDFSIIFTDSEEMRKAVADLASLLGITMLLN 298
           + AK + I+    SL IG+  AI++LV +D ++ +FT  EE+   VADL  +L +  + +
Sbjct: 298 KRAKLAAIVALILSLVIGVVVAILLLVLRDVWAYLFTSDEEVIALVADLLPILALFQIFD 357

Query: 299 SVQPVISGVAVGGGWQALVAYINLFCYYVVGLPFGFLLGYKLKFGVQGIWIGMICGTLLQ 358
            +Q V+SGV  G G Q L AY+NL  YY++GLP G LL + L  G++G+WIG+I G +LQ
Sbjct: 358 GLQAVLSGVLRGCGRQKLGAYVNLVAYYLIGLPVGLLLAFVLGLGLKGLWIGLIAGLILQ 417

Query: 359 TLILLYIVYKTNWNKEVEQ 377
            +ILL I+ +T+W+KE E+
Sbjct: 418 AVILLLIILRTDWDKEAEK 436

The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. MATE has also been identified as a large multigene family in plants, where the proteins are linked to disease resistance. A number of family members are involved in the synthesis of peptidoglycan components in bacteria. This subfamily, which is restricted to eukaryotes, contains vertebrate solute transporters responsible for secretion of cationic drugs across the brush border membranes, yeast proteins located in the vacuole membrane, and plant proteins involved in disease resistance and iron homeostatis under osmotic stress. Length = 436
>gnl|CDD|223608 COG0534, NorM, Na+-driven multidrug efflux pump [Defense mechanisms] Back     alignment and domain information
>gnl|CDD|233130 TIGR00797, matE, putative efflux protein, MATE family Back     alignment and domain information
>gnl|CDD|240536 cd13131, MATE_NorM_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Vibrio cholerae NorM Back     alignment and domain information
>gnl|CDD|240542 cd13137, MATE_NorM_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Thermotoga marina NorM Back     alignment and domain information
>gnl|CDD|240527 cd12082, MATE_like, Multidrug and toxic compound extrusion family and similar proteins Back     alignment and domain information
>gnl|CDD|190033 pfam01554, MatE, MatE Back     alignment and domain information
>gnl|CDD|240543 cd13138, MATE_yoeA_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Bacillus subtilis yoeA Back     alignment and domain information
>gnl|CDD|240539 cd13134, MATE_like_8, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|234981 PRK01766, PRK01766, multidrug efflux protein; Reviewed Back     alignment and domain information
>gnl|CDD|240538 cd13133, MATE_like_7, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|240548 cd13143, MATE_MepA_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Streptococcus aureus MepA Back     alignment and domain information
>gnl|CDD|190033 pfam01554, MatE, MatE Back     alignment and domain information
>gnl|CDD|240547 cd13142, MATE_like_12, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|240541 cd13136, MATE_DinF_like, DinF and similar proteins, a subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins Back     alignment and domain information
>gnl|CDD|240544 cd13139, MATE_like_14, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|240552 cd13147, MATE_MJ0709_like, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins, similar to Methanocaldococcus jannaschii MJ0709 Back     alignment and domain information
>gnl|CDD|240551 cd13146, MATE_like_6, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|240540 cd13135, MATE_like_9, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|240529 cd13124, MATE_SpoVB_like, Stage V sporulation protein B, also known as Stage III sporulation protein F, and related proteins Back     alignment and domain information
>gnl|CDD|240545 cd13140, MATE_like_1, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|166843 PRK00187, PRK00187, multidrug efflux protein NorA; Provisional Back     alignment and domain information
>gnl|CDD|240539 cd13134, MATE_like_8, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|240527 cd12082, MATE_like, Multidrug and toxic compound extrusion family and similar proteins Back     alignment and domain information
>gnl|CDD|223608 COG0534, NorM, Na+-driven multidrug efflux pump [Defense mechanisms] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 398
COG0534455 NorM Na+-driven multidrug efflux pump [Defense mec 100.0
PRK10189478 MATE family multidrug exporter; Provisional 100.0
PRK00187464 multidrug efflux protein NorA; Provisional 100.0
PRK01766456 multidrug efflux protein; Reviewed 100.0
PRK09575453 vmrA multidrug efflux pump VmrA; Reviewed 100.0
PRK10367441 DNA-damage-inducible SOS response protein; Provisi 100.0
TIGR01695502 mviN integral membrane protein MviN. This model re 100.0
TIGR02900488 spore_V_B stage V sporulation protein B. SpoVB is 100.0
PRK15099416 O-antigen translocase; Provisional 100.0
TIGR00797342 matE putative efflux protein, MATE family. The MAT 100.0
PF03023451 MVIN: MviN-like protein; InterPro: IPR004268 This 100.0
KOG1347473 consensus Uncharacterized membrane protein, predic 100.0
COG0728518 MviN Uncharacterized membrane protein, putative vi 99.97
PRK10459492 colanic acid exporter; Provisional 99.94
COG0534 455 NorM Na+-driven multidrug efflux pump [Defense mec 99.94
PRK00187 464 multidrug efflux protein NorA; Provisional 99.93
PRK10367 441 DNA-damage-inducible SOS response protein; Provisi 99.93
PRK10189 478 MATE family multidrug exporter; Provisional 99.93
PRK09575 453 vmrA multidrug efflux pump VmrA; Reviewed 99.93
PRK01766 456 multidrug efflux protein; Reviewed 99.92
COG2244480 RfbX Membrane protein involved in the export of O- 99.92
TIGR00797 342 matE putative efflux protein, MATE family. The MAT 99.85
PF01554162 MatE: MatE; InterPro: IPR002528 Characterised memb 99.84
TIGR02900 488 spore_V_B stage V sporulation protein B. SpoVB is 99.53
PF01943273 Polysacc_synt: Polysaccharide biosynthesis protein 99.52
KOG1347 473 consensus Uncharacterized membrane protein, predic 99.51
TIGR01695 502 mviN integral membrane protein MviN. This model re 99.45
PF13440251 Polysacc_synt_3: Polysaccharide biosynthesis prote 99.39
PRK15099 416 O-antigen translocase; Provisional 99.39
PF03023451 MVIN: MviN-like protein; InterPro: IPR004268 This 99.31
PF01554162 MatE: MatE; InterPro: IPR002528 Characterised memb 99.28
COG0728518 MviN Uncharacterized membrane protein, putative vi 99.26
PF04506549 Rft-1: Rft protein; InterPro: IPR007594 Asymmetric 99.02
KOG2864530 consensus Nuclear division RFT1 protein [Cell cycl 98.92
PRK10459492 colanic acid exporter; Provisional 98.85
COG2244480 RfbX Membrane protein involved in the export of O- 98.61
PF14667146 Polysacc_synt_C: Polysaccharide biosynthesis C-ter 98.54
PF01943273 Polysacc_synt: Polysaccharide biosynthesis protein 98.39
PF14667146 Polysacc_synt_C: Polysaccharide biosynthesis C-ter 98.33
PF13440251 Polysacc_synt_3: Polysaccharide biosynthesis prote 98.19
PF07260345 ANKH: Progressive ankylosis protein (ANKH); InterP 98.04
PF07260 345 ANKH: Progressive ankylosis protein (ANKH); InterP 98.0
PF04506549 Rft-1: Rft protein; InterPro: IPR007594 Asymmetric 97.4
COG4267467 Predicted membrane protein [Function unknown] 97.18
KOG2864530 consensus Nuclear division RFT1 protein [Cell cycl 97.01
COG4267 467 Predicted membrane protein [Function unknown] 91.11
>COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms] Back     alignment and domain information 
Probab=100.00  E-value=1e-51  Score=387.19  Aligned_cols=374  Identities=23%  Similarity=0.370  Sum_probs=352.6

Q ss_pred             CchhhhHHHHhhhCCCCcchHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHcCCCHHHHHHHHHHHHHHHhhHHHHHH
Q 015884            1 MASALETLCGQAFGAGQVELLGVYMQRSILILFVTCIFLLPL-YIFATPILKLLGQRDDIAEFAGTFAIQVIPQMFSLAF   79 (398)
Q Consensus         1 i~~g~~~~~s~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~   79 (398)
                      ++.|.++++||++|++|+++.++..+++++++++++++..++ +.+.+|++.+++.++|..+.+..|+++..++.|+..+
T Consensus        72 l~~g~~~liaq~~Ga~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ll~~l~~~~~v~~~a~~Yl~i~~~~~~~~~~  151 (455)
T COG0534          72 LGTGTTVLVAQAIGAGDRKKAKRVLGQGLLLALLLGLLLAILLLFFAEPLLRLLGAPAEVLELAAEYLRIILLGAPFALL  151 (455)
T ss_pred             HHHhHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHhHHHHHHHHHHHHHHHHHHHHH
Confidence            367999999999999999999999999999999999777754 8999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHhh-cc-cccchhhHHHHHHHHHHHHHHHHHHhhhhc---cccCC
Q 015884           80 NFPSQKFLQAQSKVGVLAWIGLAAFVVHIGMLYFFIHM-LN-WGTAGAAAAYNISALGISIGQMIYVVRYCK---DGWKG  154 (398)
Q Consensus        80 ~~~~~~~l~~~~~~~~~~~~~i~~~~~~i~~~~~li~~-~~-~g~~g~a~a~~i~~~~~~~~~~~~~~~~~~---~~~~~  154 (398)
                      +..+++.+|+.|++|.+++.+++++++|+++|++|+++ ++ +|+.|+++||++++.+..++..+++.|+++   ....+
T Consensus       152 ~~~~~~~lr~~G~~~~~m~~~~~~~~lNivln~llI~g~~g~lGv~GAA~AT~ia~~~~~~~~~~~~~~~~~~~~~~~~~  231 (455)
T COG0534         152 SFVLSGILRGLGDTKTPMYILLLGNLLNIVLNYLLIFGLFGGLGVAGAALATVIARWIGALLLLIYLLRKKRLLSLFKKK  231 (455)
T ss_pred             HHHHHHHHHhcCCCchhHHHHHHHHHHHHHhhHHHHHhccccccchhHHHHHHHHHHHHHHHHHHHHHhcchhhhhhhhh
Confidence            99999999999999999999999999999999999998 57 999999999999999999999999886553   22223


Q ss_pred             CCHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 015884          155 LSWLAFKDIWGFVRLSIASAIMLCLEIWYFMTIIVLTGHLEDPVIAVGSLSICMNINGWEGMLFLGINAAISVRVSNELG  234 (398)
Q Consensus       155 ~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~i~~~i~~~~~~~~~~i~~~~~p~~s~~~g  234 (398)
                      ..+.+++..|++++.|+|.++++..+.......+.+.+++|  ++++|+|+++.++.++.+++..|++++.+|+++|++|
T Consensus       232 ~~~~~~~~~~~i~~lG~p~~~~~~~~~~~~~~~~~~~~~~G--~~~lAa~~i~~~i~~~~~~~~~gi~~a~~~lvG~~~G  309 (455)
T COG0534         232 LLKPDRKLLKEILRLGLPIFLESLSESLGFLLLTLFVARLG--TVALAAYGIALRIASFIFMPPFGIAQAVTILVGQNLG  309 (455)
T ss_pred             ccCCCHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhcC--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            33566789999999999999999999999999999999999  8899999999999999999999999999999999999


Q ss_pred             CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHchhhhhhccCCcHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccCcc
Q 015884          235 SSHPRAAKYSVIITTTQSLFIGIFCAIVILVTKDDFSIIFTDSEEMRKAVADLASLLGITMLLNSVQPVISGVAVGGGWQ  314 (398)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~  314 (398)
                      +||++++++..+.++..++.++...+++++++++++.++|++|+|+.+.+..++++..+..++++.+....+.+|+.||+
T Consensus       310 a~~~~~a~~~~~~~~~~~~~~~~~~~~i~~~f~~~i~~lF~~~~~v~~~~~~~l~i~~~~~~~~~~~~v~~g~lrg~g~~  389 (455)
T COG0534         310 AGNYKRARRAARLALKLSLLIALLIALLLLLFREPIISLFTTDPEVIALAVILLLIAALFQPFDGIQFVLSGVLRGAGDA  389 (455)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhHHHHHHHHHhhhhhHHHHHHHhhCCCcchhhHHHHHHHHHHHHHHHHHHhhcChHHHHHH
Q 015884          315 ALVAYINLFCYYVVGLPFGFLLGYKLKFGVQGIWIGMICGTLLQTLILLYIVYKTNWNKEVEQ  377 (398)
Q Consensus       315 ~~~~~~~~~~~~~~~i~~~~~l~~~~~~g~~G~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~  377 (398)
                      |.++..++.+.|.+.+|+.+++.... +|..|+|++...++.+..+...+++++++|+++..+
T Consensus       390 ~~~~~~~~~~~~~~~lp~~~~l~~~~-~g~~Gvw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  451 (455)
T COG0534         390 KIPFIISLLSYWGFRLPLAYLLGFFF-LGLAGVWIGFPLSLILRAILLLLRLRRGRWRRKAVA  451 (455)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHhhhc-ccchHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhh
Confidence            99999999999999999999998766 899999999999999999999999999888776544

>PRK10189 MATE family multidrug exporter; Provisional Back     alignment and domain information
>PRK00187 multidrug efflux protein NorA; Provisional Back     alignment and domain information
>PRK01766 multidrug efflux protein; Reviewed Back     alignment and domain information
>PRK09575 vmrA multidrug efflux pump VmrA; Reviewed Back     alignment and domain information
>PRK10367 DNA-damage-inducible SOS response protein; Provisional Back     alignment and domain information
>TIGR01695 mviN integral membrane protein MviN Back     alignment and domain information
>TIGR02900 spore_V_B stage V sporulation protein B Back     alignment and domain information
>PRK15099 O-antigen translocase; Provisional Back     alignment and domain information
>TIGR00797 matE putative efflux protein, MATE family Back     alignment and domain information
>PF03023 MVIN: MviN-like protein; InterPro: IPR004268 This entry represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions Back     alignment and domain information
>KOG1347 consensus Uncharacterized membrane protein, predicted efflux pump [General function prediction only] Back     alignment and domain information
>COG0728 MviN Uncharacterized membrane protein, putative virulence factor [General function prediction only] Back     alignment and domain information
>PRK10459 colanic acid exporter; Provisional Back     alignment and domain information
>COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms] Back     alignment and domain information
>PRK00187 multidrug efflux protein NorA; Provisional Back     alignment and domain information
>PRK10367 DNA-damage-inducible SOS response protein; Provisional Back     alignment and domain information
>PRK10189 MATE family multidrug exporter; Provisional Back     alignment and domain information
>PRK09575 vmrA multidrug efflux pump VmrA; Reviewed Back     alignment and domain information
>PRK01766 multidrug efflux protein; Reviewed Back     alignment and domain information
>COG2244 RfbX Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only] Back     alignment and domain information
>TIGR00797 matE putative efflux protein, MATE family Back     alignment and domain information
>PF01554 MatE: MatE; InterPro: IPR002528 Characterised members of the Multi Antimicrobial Extrusion (MATE) family function as drug/sodium antiporters Back     alignment and domain information
>TIGR02900 spore_V_B stage V sporulation protein B Back     alignment and domain information
>PF01943 Polysacc_synt: Polysaccharide biosynthesis protein; InterPro: IPR002797 Members of this family are integral membrane proteins [], and many are implicated in the production of polysaccharide Back     alignment and domain information
>KOG1347 consensus Uncharacterized membrane protein, predicted efflux pump [General function prediction only] Back     alignment and domain information
>TIGR01695 mviN integral membrane protein MviN Back     alignment and domain information
>PF13440 Polysacc_synt_3: Polysaccharide biosynthesis protein Back     alignment and domain information
>PRK15099 O-antigen translocase; Provisional Back     alignment and domain information
>PF03023 MVIN: MviN-like protein; InterPro: IPR004268 This entry represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions Back     alignment and domain information
>PF01554 MatE: MatE; InterPro: IPR002528 Characterised members of the Multi Antimicrobial Extrusion (MATE) family function as drug/sodium antiporters Back     alignment and domain information
>COG0728 MviN Uncharacterized membrane protein, putative virulence factor [General function prediction only] Back     alignment and domain information
>PF04506 Rft-1: Rft protein; InterPro: IPR007594 Asymmetric lipid distribution is a fundamental characteristic of biological lipid bilayers, one such axample is the translocation of the Man5GlcNAc2-PP-Dol intermediate from the cytosolic side of the ER membrane to the lumen before the completion of the biosynthesis of Glc3Man9GlcNAc2-PP-Dol [] Back     alignment and domain information
>KOG2864 consensus Nuclear division RFT1 protein [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PRK10459 colanic acid exporter; Provisional Back     alignment and domain information
>COG2244 RfbX Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only] Back     alignment and domain information
>PF14667 Polysacc_synt_C: Polysaccharide biosynthesis C-terminal domain Back     alignment and domain information
>PF01943 Polysacc_synt: Polysaccharide biosynthesis protein; InterPro: IPR002797 Members of this family are integral membrane proteins [], and many are implicated in the production of polysaccharide Back     alignment and domain information
>PF14667 Polysacc_synt_C: Polysaccharide biosynthesis C-terminal domain Back     alignment and domain information
>PF13440 Polysacc_synt_3: Polysaccharide biosynthesis protein Back     alignment and domain information
>PF07260 ANKH: Progressive ankylosis protein (ANKH); InterPro: IPR009887 This family consists of several progressive ankylosis protein (ANK or ANKH) sequences Back     alignment and domain information
>PF07260 ANKH: Progressive ankylosis protein (ANKH); InterPro: IPR009887 This family consists of several progressive ankylosis protein (ANK or ANKH) sequences Back     alignment and domain information
>PF04506 Rft-1: Rft protein; InterPro: IPR007594 Asymmetric lipid distribution is a fundamental characteristic of biological lipid bilayers, one such axample is the translocation of the Man5GlcNAc2-PP-Dol intermediate from the cytosolic side of the ER membrane to the lumen before the completion of the biosynthesis of Glc3Man9GlcNAc2-PP-Dol [] Back     alignment and domain information
>COG4267 Predicted membrane protein [Function unknown] Back     alignment and domain information
>KOG2864 consensus Nuclear division RFT1 protein [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>COG4267 Predicted membrane protein [Function unknown] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query398
3mkt_A460 Structure Of A Cation-Bound Multidrug And Toxin Com 2e-10
4huk_A459 Mate Transporter Norm-ng In Complex With Tpp And Mo 9e-05
>pdb|3MKT|A Chain A, Structure Of A Cation-Bound Multidrug And Toxin Compound Extrusion (Mate) Transporter Length = 460 Back     alignment and structure 
Iteration: 1

 Score = 63.5 bits (153), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 52/228 (22%), Positives = 105/228 (46%), Gaps = 10/228 (4%)
Query: 161 KDIWGFVRLSIASAIMLCLEIWYFMTIIVLTGHLEDPVIAVGSLSICMNINGWEGMLFLG 220
           K++    RL    A  L  E+  F  + +L   L   V+A  +  + +N +    M  + 
Sbjct: 235 KELIRLFRLGFPVAAALFFEVTLFAVVALLVAPLGSTVVA--AHQVALNFSSLVFMFPMS 292
Query: 221 INAAISVRVSNELGSSHPRAAKYSVIITTTQSLFIGIFCAIVILVTKDDFSIIFTDSEEM 280
           I AA+S+RV ++LG    + A  +  +     L      A++ ++ ++  ++++T+++ +
Sbjct: 293 IGAAVSIRVGHKLGEQDTKGAAIAANVGLMTGLATACITALLTVLFREQIALLYTENQVV 352
Query: 281 RKAVADLASLLGITMLLNSVQPVISGVAVGGGWQALVAYINLFCYYVVGLPFGFLLGY-- 338
                 L     I   +++VQ V +G   G      + +     Y+V+GLP G++LG   
Sbjct: 353 VALAMQLLLFAAIYQCMDAVQVVAAGSLRGYKDMTAIFHRTFISYWVLGLPTGYILGMTN 412
Query: 339 ---KLKFGVQGIWIGMICGTLLQTLIL---LYIVYKTNWNKEVEQASE 380
              +   G +G W+G I G     L+L   LY + K + + ++  A++
Sbjct: 413 WLTEQPLGAKGFWLGFIIGLSAAALMLGQRLYWLQKQSDDVQLHLAAK 460
>pdb|4HUK|A Chain A, Mate Transporter Norm-ng In Complex With Tpp And Monobody Length = 459 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query398
3mkt_A460 Multi antimicrobial extrusion protein (Na(+)/drug 2e-58
>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A Length = 460 Back     alignment and structure
 Score =  196 bits (500), Expect = 2e-58
 Identities = 71/396 (17%), Positives = 155/396 (39%), Gaps = 15/396 (3%)

Query: 1   MASALETLCGQAFGAGQVELLGVYMQRSILILFVTCIFLLPLYIFATPILKLLGQRDDIA 60
           +  AL  +  Q  GAG+   +   + + +++  +  + ++ +      I++ +   + +A
Sbjct: 67  LLMALVPVVAQLNGAGRQHKIPFEVHQGLILALLVSVPIIAVLFQTQFIIRFMDVEEAMA 126

Query: 61  EFAGTFAIQVIPQMFSLAFNFPSQKFLQAQSKVGVLAWIGLAAFVVHIGMLYFFIH---- 116
                +   VI  + +       + F    S       IG    +++I + + F++    
Sbjct: 127 TKTVGYMHAVIFAVPAYLLFQALRSFTDGMSLTKPAMVIGFIGLLLNIPLNWIFVYGKFG 186

Query: 117 MLNWGTAGAAAAYNISALGISIGQMIYVVRY----CKDGWKGLSWLAFKDIWGFVRLSIA 172
               G  G   A  I    + +  + Y+V          ++       K++    RL   
Sbjct: 187 APELGGVGCGVATAIVYWIMLLLLLFYIVTSKRLAHVKVFETFHKPQPKELIRLFRLGFP 246

Query: 173 SAIMLCLEIWYFMTIIVLTGHLEDPVIAVGSLSICMNINGWEGMLFLGINAAISVRVSNE 232
            A  L  E+  F  + +L   L      V +  + +N +    M  + I AA+S+RV ++
Sbjct: 247 VAAALFFEVTLFAVVALLVAPL--GSTVVAAHQVALNFSSLVFMFPMSIGAAVSIRVGHK 304

Query: 233 LGSSHPRAAKYSVIITTTQSLFIGIFCAIVILVTKDDFSIIFTDSEEMRKAVADLASLLG 292
           LG    + A  +  +     L      A++ ++ ++  ++++T+++ +      L     
Sbjct: 305 LGEQDTKGAAIAANVGLMTGLATACITALLTVLFREQIALLYTENQVVVALAMQLLLFAA 364

Query: 293 ITMLLNSVQPVISGVAVGGGWQALVAYINLFCYYVVGLPFGFLLGY-----KLKFGVQGI 347
           I   +++VQ V +G   G      + +     Y+V+GLP G++LG      +   G +G 
Sbjct: 365 IYQCMDAVQVVAAGSLRGYKDMTAIFHRTFISYWVLGLPTGYILGMTNWLTEQPLGAKGF 424

Query: 348 WIGMICGTLLQTLILLYIVYKTNWNKEVEQASERMR 383
           W+G I G     L+L   +Y      +  Q     +
Sbjct: 425 WLGFIIGLSAAALMLGQRLYWLQKQSDDVQLHLAAK 460

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query398
3mkt_A460 Multi antimicrobial extrusion protein (Na(+)/drug 100.0
3mkt_A 460 Multi antimicrobial extrusion protein (Na(+)/drug 99.85
>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A Back     alignment and structure
Probab=100.00  E-value=6.3e-44  Score=339.02  Aligned_cols=367  Identities=19%  Similarity=0.314  Sum_probs=337.1

Q ss_pred             chhhhHHHHhhhCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCCHHHHHHHHHHHHHHHhhHHHHHHHH
Q 015884            2 ASALETLCGQAFGAGQVELLGVYMQRSILILFVTCIFLLPLYIFATPILKLLGQRDDIAEFAGTFAIQVIPQMFSLAFNF   81 (398)
Q Consensus         2 ~~g~~~~~s~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~   81 (398)
                      ++|..+.++|++|++|+++.++.+++++.+.++.+++..++..+.+|++.+++.+++..+.+..|+++..++.++..+..
T Consensus        68 ~~~~~~~is~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~  147 (460)
T 3mkt_A           68 LMALVPVVAQLNGAGRQHKIPFEVHQGLILALLVSVPIIAVLFQTQFIIRFMDVEEAMATKTVGYMHAVIFAVPAYLLFQ  147 (460)
T ss_dssp             HHHHGGGCTTTTSSSSTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCSSTTHHHHHHHHHHTTGGGHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            46789999999999999999999999999999999988776788899999899999999999999999999999999999


Q ss_pred             HHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHhh-c---ccccchhhHHHHHHHHHHHHHHHHHHhhhhcccc----C
Q 015884           82 PSQKFLQAQSKVGVLAWIGLAAFVVHIGMLYFFIHM-L---NWGTAGAAAAYNISALGISIGQMIYVVRYCKDGW----K  153 (398)
Q Consensus        82 ~~~~~l~~~~~~~~~~~~~i~~~~~~i~~~~~li~~-~---~~g~~g~a~a~~i~~~~~~~~~~~~~~~~~~~~~----~  153 (398)
                      .+.+++|++||++.++..+++++++|+++++++++. +   ++|+.|+++|+.+++.+..++..++++|+.+...    .
T Consensus       148 ~~~~~l~~~~~~~~~~~~~~~~~~~~i~l~~~li~~~~~~p~~g~~g~a~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~  227 (460)
T 3mkt_A          148 ALRSFTDGMSLTKPAMVIGFIGLLLNIPLNWIFVYGKFGAPELGGVGCGVATAIVYWIMLLLLLFYIVTSKRLAHVKVFE  227 (460)
T ss_dssp             HHTTTTCTTSCCTTTHHHHHHHHHHHHHHHHHHHSCCTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCCCCSC
T ss_pred             HHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHcCCCCCcccchhhHHHHHHHHHHHHHHHHHHHHHhCcchhhhhhhh
Confidence            999999999999999999999999999999999975 3   7999999999999999999988877775433221    1


Q ss_pred             CCCHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 015884          154 GLSWLAFKDIWGFVRLSIASAIMLCLEIWYFMTIIVLTGHLEDPVIAVGSLSICMNINGWEGMLFLGINAAISVRVSNEL  233 (398)
Q Consensus       154 ~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~i~~~i~~~~~~~~~~i~~~~~p~~s~~~  233 (398)
                      ++...+.+..|+++++++|..++++...+...++..+++.+|  ++++|+|++++++.++...+..+++++..|.+++++
T Consensus       228 ~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~g--~~~va~~~i~~~i~~~~~~~~~~~~~a~~p~i~~~~  305 (460)
T 3mkt_A          228 TFHKPQPKELIRLFRLGFPVAAALFFEVTLFAVVALLVAPLG--STVVAAHQVALNFSSLVFMFPMSIGAAVSIRVGHKL  305 (460)
T ss_dssp             CCCSSTTSSTTTSHHHHHHHHHHHHHHHHHHHHHHHHTCTTS--SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccccCHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcC--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            222345678888999999999999999999999999999997  789999999999999999999999999999999999


Q ss_pred             cCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHchhhhhhccCCcHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccCc
Q 015884          234 GSSHPRAAKYSVIITTTQSLFIGIFCAIVILVTKDDFSIIFTDSEEMRKAVADLASLLGITMLLNSVQPVISGVAVGGGW  313 (398)
Q Consensus       234 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~  313 (398)
                      |+||.+++++..+++.+....++++.+++++++++++.++|.+|+++.+.+.+++++++++.++.+++....+++++.||
T Consensus       306 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~  385 (460)
T 3mkt_A          306 GEQDTKGAAIAANVGLMTGLATACITALLTVLFREQIALLYTENQVVVALAMQLLLFAAIYQCMDAVQVVAAGSLRGYKD  385 (460)
T ss_dssp             HSSCCCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGST
T ss_pred             cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence            99999999999999999999999999999999999999999999888999999999999999999999999999999999


Q ss_pred             chhhHHHHHHHHHhhhhhHHHHHHHh----hC-CCcchhhHHHHHHHHHHHHHHHHHHhhcC
Q 015884          314 QALVAYINLFCYYVVGLPFGFLLGYK----LK-FGVQGIWIGMICGTLLQTLILLYIVYKTN  370 (398)
Q Consensus       314 ~~~~~~~~~~~~~~~~i~~~~~l~~~----~~-~g~~G~~~a~~~~~~~~~~~~~~~~~~~~  370 (398)
                      +|.+++.++++.|++++|+++++.+.    ++ +|..|+|+++.+++++..++..++++|..
T Consensus       386 ~~~~~~~~~~~~~~~~i~l~~~l~~~~~~~~~~~G~~G~~~a~~~~~~~~~~~~~~~~~~~~  447 (460)
T 3mkt_A          386 MTAIFHRTFISYWVLGLPTGYILGMTNWLTEQPLGAKGFWLGFIIGLSAAALMLGQRLYWLQ  447 (460)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSSHHHHHHHHHHHHHHHHHHHHHSSSSSSC
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccCchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999886    66 99999999999999998888876666554
>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00