Citrus Sinensis ID: 015917

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------40
MYGTQSKRDLALELQAQIPFLRPSIHARRANITVKFQDLYGFTVEGNVDDVNVLNEVREKVREQGRVWWALEASKGANWYLQPQIASISEGIALKSSLKLSSLANAITLKKLIRKGIPPVLRPKVWFSLSGAAKKKSTVPESYYNDLTKAVEGKVTPATKQIDHDLPRTFPGHPWLDTPDGHATLRRVLVGYSFRDSDVGYCQGLNYVAALLLLVMKTEEDAFWMLAVLLENVLVNDCYTNNLSGCHVEQRVFKDLLVKQCPRIASHLEALDFDVSLVATEWFLCLFSKSLPSETTLRVWDVLFYEGAKVLFHVALAIFKMREDELLVTHHVGDVINILQRTTHHLFDPDELLTVAFDKIGSMTTNTISKQRKKQEPAVMAELDQRLRRLNSLKMDDK
ccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHccccccccHHHHHHHHHcccccccHHHHHHHHHccHHHHHHccccHHHHHHHHHcccccccHHHHHHHccccccccccccccccHHHHHHHHHHHHccccccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHccHHHHHHHHcccccHHHHHHHHHHHHcccccccHHHHHHHHHHHcccHHHHHHHHHHHHHcHHHHHccccHHHHHHHHHHHccccccHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccc
ccccccHHHHEEEccccccccccccHHHHHHHEEHHHHHcccEcccccccHHHHHcHHHHcccccccHHHHHccccccHHHHHHHcHHHHHHHHHHccccccccccHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHcccccHHHHHHHHHHccccccccccccHcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccEEEEEEHHHHHHHHHHcccHHEEEEEHHHHHHcHHHHHHHHHHHHHHHcHHHHHccccHHHHHHHHHHHHHccccHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHcccEEEEcccc
MYGTQSKRDLALELQAqipflrpsiharrANITVKFqdlygftvegnvddvnVLNEVREKVREQGRVWWALEAskganwylqpqiaSISEGIALKSSLKLSSLANAITLKKLIrkgippvlrpkvwfslsgaakkkstvpesyyndltkavegkvtpatkqidhdlprtfpghpwldtpdghaTLRRVLVGYsfrdsdvgycQGLNYVAALLLLVMKTEEDAFWMLAVLLENVLVndcytnnlsgchvEQRVFKDLLVKQCPRIASHLEALDFDVSLVATEWFLCLfskslpsettlRVWDVLFYEGAKVLFHVALAIFKMREDELLVTHHVGDVINILQrtthhlfdpdelLTVAFDKIgsmttntiskqrkkqePAVMAELDQRLRRLNSLKMDDK
mygtqskrdLALELQAQipflrpsihaRRANITVKFQDLYGFtvegnvddvnvLNEVREKVREQGRVWWALEASKGANWYLQPQIASISEGIALKSSLKLSSLANAITLKklirkgippvlrPKVWFslsgaakkkstvpesyynDLTKAVEGKVTPATKQIDHDLPRTFPGHPWLDTPDGHATLRRVLVGYSFRDSDVGYCQGLNYVAALLLLVMKTEEDAFWMLAVLLENVLVNDCYTNNLSGCHVEQRVFKDLLVKQCPRIASHLEALDFDVSLVATEWFLCLFSKSLPSETTLRVWDVLFYEGAKVLFHVALAIFKMREDELLVTHHVGDVINILQRtthhlfdpDELLTVAFDKIGSMTTntiskqrkkqepavmAELDQRlrrlnslkmddk
MYGTQSKRDLALELQAQIPFLRPSIHARRANITVKFQDLYGFTVEGNVDDVNVLNEVREKVREQGRVWWALEASKGANWYLQPQIASISEGIAlksslklsslANAITLKKLIRKGIPPVLRPKVWFSLSGAAKKKSTVPESYYNDLTKAVEGKVTPATKQIDHDLPRTFPGHPWLDTPDGHATLRRVLVGYSFRDSDVGYCQGLNYVAALLLLVMKTEEDAFWMLAVLLENVLVNDCYTNNLSGCHVEQRVFKDLLVKQCPRIASHLEALDFDVSLVATEWFLCLFSKSLPSETTLRVWDVLFYEGAKVLFHVALAIFKMREDELLVTHHVGDVINILQRTTHHLFDPDELLTVAFDKIGSMTTNTISKQRKKQEPAVMAELDQRLRRLNSLKMDDK
***********LELQAQIPFLRPSIHARRANITVKFQDLYGFTVEGNVDDVNVLNEVREKVREQGRVWWALEASKGANWYLQPQIASISEGIALKSSLKLSSLANAITLKKLIRKGIPPVLRPKVWFSLSGAAK****VPESYYNDLTKAVEGKVTPATKQIDHDLPRTFPGHPWLDTPDGHATLRRVLVGYSFRDSDVGYCQGLNYVAALLLLVMKTEEDAFWMLAVLLENVLVNDCYTNNLSGCHVEQRVFKDLLVKQCPRIASHLEALDFDVSLVATEWFLCLFSKSLPSETTLRVWDVLFYEGAKVLFHVALAIFKMREDELLVTHHVGDVINILQRTTHHLFDPDELLTVAFDKIGS************************************
*************************************DLYGFTVEGNVDD***************************NWYLQPQIASISEGIALKSSLKLSSLANAITLKKLIRKGIPPVLRPKVWFSLSGAAKKKSTVPESYYNDLTK********ATKQIDHDLPRTFPGHPWLDTPDGHATLRRVLVGYSFRDSDVGYCQGLNYVAALLLLVMKTEEDAFWMLAVLLENVLVNDCYTNNLSGCHVEQRVFKDLLVKQCPRIASHLEALDFDVSLVATEWFLCLFSKSLPSETTLRVWDVLFYEGAKVLFHVALAIFKMREDELLVTHHVGDVINILQRTTHHLFDPDELLTVAFDKIGSMTTNTISKQRKKQ***********************
********DLALELQAQIPFLRPSIHARRANITVKFQDLYGFTVEGNVDDVNVLNEVREKVREQGRVWWALEASKGANWYLQPQIASISEGIALKSSLKLSSLANAITLKKLIRKGIPPVLRPKVWFSLSGAAKKKSTVPESYYNDLTKAVEGKVTPATKQIDHDLPRTFPGHPWLDTPDGHATLRRVLVGYSFRDSDVGYCQGLNYVAALLLLVMKTEEDAFWMLAVLLENVLVNDCYTNNLSGCHVEQRVFKDLLVKQCPRIASHLEALDFDVSLVATEWFLCLFSKSLPSETTLRVWDVLFYEGAKVLFHVALAIFKMREDELLVTHHVGDVINILQRTTHHLFDPDELLTVAFDKIGSMTTN***********AVMAELDQRLRRLNSLKMDDK
***TQSKRDLALELQAQIPFLRPSIHARRANITVKFQDLYGFTVEGNVDDVNVLNEVREKVREQGRVWWALEASKGANWYLQPQIASISEGIALKSSLKLSSLANAITLKKLIRKGIPPVLRPKVWFSLSGAAKKKSTVPESYYNDLTKAVEGKVTPATKQIDHDLPRTFPGHPWLDTPDGHATLRRVLVGYSFRDSDVGYCQGLNYVAALLLLVMKTEEDAFWMLAVLLENVLVNDCYTNNLSGCHVEQRVFKDLLVKQCPRIASHLEALDFDVSLVATEWFLCLFSKSLPSETTLRVWDVLFYEGAKVLFHVALAIFKMREDELLVTHHVGDVINILQRTTHHLFDPDELLTVAFDKIGSMTTNTISKQRKKQEPAVMAELDQRLRRLNSLK****
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MYGTQSKRDLALELQAQIPFLRPSIHARRANITVKFQDLYGFTVEGNVDDVNVLNEVREKVREQGRVWWALEASKGANWYLQPQIASISEGIALKSSLKLSSLANAITLKKLIRKGIPPVLRPKVWFSLSGAAKKKSTVPESYYNDLTKAVEGKVTPATKQIDHDLPRTFPGHPWLDTPDGHATLRRVLVGYSFRDSDVGYCQGLNYVAALLLLVMKTEEDAFWMLAVLLENVLVNDCYTNNLSGCHVEQRVFKDLLVKQCPRIASHLEALDFDVSLVATEWFLCLFSKSLPSETTLRVWDVLFYEGAKVLFHVALAIFKMREDELLVTHHVGDVINILQRTTHHLFDPDELLTVAFDKIGSMTTNTISKQRKKQEPAVMAELDQRLRRLNSLKMDDK
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query398 2.2.26 [Sep-21-2011]
Q9BYX2928 TBC1 domain family member yes no 0.733 0.314 0.371 4e-49
B1AVH7922 TBC1 domain family member yes no 0.683 0.295 0.370 3e-47
A6QP29925 TBC1 domain family member yes no 0.716 0.308 0.364 4e-47
Q7T2D0 755 Small G protein signaling no no 0.708 0.373 0.370 2e-46
Q96HU1 749 Small G protein signaling yes no 0.713 0.379 0.357 5e-46
B5DFA1924 TBC1 domain family member no no 0.683 0.294 0.367 6e-46
A6H8I2 753 Small G protein signaling N/A no 0.713 0.377 0.361 1e-45
Q2KI13 747 Small G protein signaling no no 0.713 0.380 0.357 3e-45
Q6P6R7 749 Small G protein signaling no no 0.701 0.372 0.353 2e-44
Q28CB1943 TBC1 domain family member no no 0.708 0.299 0.365 2e-44
>sp|Q9BYX2|TBD2A_HUMAN TBC1 domain family member 2A OS=Homo sapiens GN=TBC1D2 PE=1 SV=3 Back     alignment and function desciption
 Score =  196 bits (497), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 111/299 (37%), Positives = 165/299 (55%), Gaps = 7/299 (2%)

Query: 100 LSSLANAITLKKLIRKGIPPVLRPKVWFSLSGAAKKKSTVPESYYNDLTKAVEGKVTPAT 159
           L  L  +  LK+L+R G+P   RP+VW  L     +    P  Y   L++  + +  PA 
Sbjct: 609 LGDLVPSAELKQLLRAGVPREHRPRVWRWLVHLRVQHLHTPGCYQELLSRG-QAREHPAA 667

Query: 160 KQIDHDLPRTFPGHPWLDTPDGH--ATLRRVLVGYSFRDSDVGYCQGLNYVAALLLLVMK 217
           +QI+ DL RTFP +     P       LRRVL+ +S+++  +GYCQGLN +AA+ LLV++
Sbjct: 668 RQIELDLNRTFPNNKHFTCPTSSFPDKLRRVLLAFSWQNPTIGYCQGLNRLAAIALLVLE 727

Query: 218 TEEDAFWMLAVLLENVLVNDCYTNNLSGCHVEQRVFKDLLVKQCPRIASHLEALDFDVSL 277
            EE AFW L  ++E ++  D Y N L+   V+QRV +DLL ++ PR+ +HL     D+SL
Sbjct: 728 EEESAFWCLVAIVETIMPADYYCNTLTASQVDQRVLQDLLSEKLPRLMAHLGQHHVDLSL 787

Query: 278 VATEWFLCLFSKSLPSETTLRVWDVLFYEGAKVLFHVALAIFKMREDELLVTHHVGDVIN 337
           V   WFL +F+ SL S   LRVWD   YEG KV+F  ALAIFK  E E+L   +  ++  
Sbjct: 788 VTFNWFLVVFADSLISNILLRVWDAFLYEGTKVVFRYALAIFKYNEKEILRLQNGLEIYQ 847

Query: 338 ILQRTTHHLFDPDELLTVAFDKIGSMTTNTISKQRKKQEPAVMAELDQRLRRLNSLKMD 396
            L+  T  + +  +L+ +AF+ +       + + R      + AE    LR L  LK +
Sbjct: 848 YLRFFTKTISNSRKLMNIAFNDMNPFRMKQLRQLRMVHRERLEAE----LRELEQLKAE 902
Acts as GTPase-activating protein for RAB7A. Signal effector acting as a linker between RAC1 and RAB7A, leading to RAB7A inactivation and subsequent inhibition of cadherin degradation and reduced cell-cell adhesion.
Homo sapiens (taxid: 9606)
>sp|B1AVH7|TBD2A_MOUSE TBC1 domain family member 2A OS=Mus musculus GN=Tbc1d2 PE=2 SV=1 Back     alignment and function description
>sp|A6QP29|TBD2A_BOVIN TBC1 domain family member 2A OS=Bos taurus GN=TBC1D2 PE=2 SV=1 Back     alignment and function description
>sp|Q7T2D0|SGSM3_DANRE Small G protein signaling modulator 3 OS=Danio rerio GN=sgsm3 PE=2 SV=1 Back     alignment and function description
>sp|Q96HU1|SGSM3_HUMAN Small G protein signaling modulator 3 OS=Homo sapiens GN=SGSM3 PE=1 SV=1 Back     alignment and function description
>sp|B5DFA1|TBD2A_RAT TBC1 domain family member 2A OS=Rattus norvegicus GN=Tbc1d2 PE=2 SV=1 Back     alignment and function description
>sp|A6H8I2|SGSM3_XENLA Small G protein signaling modulator 3 homolog OS=Xenopus laevis GN=sgsm3 PE=2 SV=1 Back     alignment and function description
>sp|Q2KI13|SGSM3_BOVIN Small G protein signaling modulator 3 OS=Bos taurus GN=SGSM3 PE=2 SV=1 Back     alignment and function description
>sp|Q6P6R7|SGSM3_RAT Small G protein signaling modulator 3 OS=Rattus norvegicus GN=Sgsm3 PE=1 SV=1 Back     alignment and function description
>sp|Q28CB1|TBD2B_XENTR TBC1 domain family member 2B OS=Xenopus tropicalis GN=tbc1d2b PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query398
449441672395 PREDICTED: TBC1 domain family member 2A- 0.992 1.0 0.932 0.0
255583042398 conserved hypothetical protein [Ricinus 1.0 1.0 0.914 0.0
224131770399 predicted protein [Populus trichocarpa] 1.0 0.997 0.904 0.0
225446987398 PREDICTED: TBC1 domain family member 2A 1.0 1.0 0.904 0.0
224068867399 predicted protein [Populus trichocarpa] 0.997 0.994 0.896 0.0
224113351399 predicted protein [Populus trichocarpa] 0.997 0.994 0.891 0.0
297833578400 RabGAP/TBC domain-containing protein [Ar 1.0 0.995 0.884 0.0
18398086400 RabGAP/TBC domain-containing protein [Ar 1.0 0.995 0.886 0.0
356554560395 PREDICTED: TBC1 domain family member 2A- 0.992 1.0 0.876 0.0
356499495395 PREDICTED: TBC1 domain family member 2A- 0.992 1.0 0.871 0.0
>gi|449441672|ref|XP_004138606.1| PREDICTED: TBC1 domain family member 2A-like [Cucumis sativus] gi|449490052|ref|XP_004158494.1| PREDICTED: TBC1 domain family member 2A-like [Cucumis sativus] Back     alignment and taxonomy information
 Score =  775 bits (2000), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 371/398 (93%), Positives = 388/398 (97%), Gaps = 3/398 (0%)

Query: 1   MYGTQSKRDLALELQAQIPFLRPSIHARRANITVKFQDLYGFTVEGNVDDVNVLNEVREK 60
           M+GTQSKRD+ALELQAQIP LRPSIHARRANITVKFQDLYGFTVEGNVDDVNVLNEVREK
Sbjct: 1   MFGTQSKRDIALELQAQIPILRPSIHARRANITVKFQDLYGFTVEGNVDDVNVLNEVREK 60

Query: 61  VREQGRVWWALEASKGANWYLQPQIASISEGIALKSSLKLSSLANAITLKKLIRKGIPPV 120
           VR+QGRVWWALEASKGANWYLQP   S+SEGIALKSSLKLS+LANAITLKKLI KGIPPV
Sbjct: 61  VRQQGRVWWALEASKGANWYLQP---SVSEGIALKSSLKLSTLANAITLKKLISKGIPPV 117

Query: 121 LRPKVWFSLSGAAKKKSTVPESYYNDLTKAVEGKVTPATKQIDHDLPRTFPGHPWLDTPD 180
           LRPKVWFSLSGAAKKKSTVP+SYYNDLTKAVEGKVTPAT+QIDHDLPRTFPGHPWLDTP+
Sbjct: 118 LRPKVWFSLSGAAKKKSTVPDSYYNDLTKAVEGKVTPATRQIDHDLPRTFPGHPWLDTPE 177

Query: 181 GHATLRRVLVGYSFRDSDVGYCQGLNYVAALLLLVMKTEEDAFWMLAVLLENVLVNDCYT 240
           GHA LRRVLVGYSFRDSDVGYCQGLNYVAALLLLVMKTEEDAFWMLAVLLENVLV+DCYT
Sbjct: 178 GHAALRRVLVGYSFRDSDVGYCQGLNYVAALLLLVMKTEEDAFWMLAVLLENVLVSDCYT 237

Query: 241 NNLSGCHVEQRVFKDLLVKQCPRIASHLEALDFDVSLVATEWFLCLFSKSLPSETTLRVW 300
            NLSGCHVEQRVFKDLL K+CPRIA+HLEALDFDVSLVATEWFLCLFSKSLPSETTLRVW
Sbjct: 238 TNLSGCHVEQRVFKDLLTKKCPRIAAHLEALDFDVSLVATEWFLCLFSKSLPSETTLRVW 297

Query: 301 DVLFYEGAKVLFHVALAIFKMREDELLVTHHVGDVINILQRTTHHLFDPDELLTVAFDKI 360
           DVLFYEGAKVLFHVALAIFKM+E ELL+THHVGDVINILQ+TTH+LFDPD+LLTVA+DKI
Sbjct: 298 DVLFYEGAKVLFHVALAIFKMKEGELLITHHVGDVINILQKTTHYLFDPDDLLTVAYDKI 357

Query: 361 GSMTTNTISKQRKKQEPAVMAELDQRLRRLNSLKMDDK 398
           GSMTTNTISKQRKKQEPAVMAELDQRLRRLNSLK DDK
Sbjct: 358 GSMTTNTISKQRKKQEPAVMAELDQRLRRLNSLKADDK 395

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255583042|ref|XP_002532289.1| conserved hypothetical protein [Ricinus communis] gi|223528023|gb|EEF30104.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
>gi|224131770|ref|XP_002321174.1| predicted protein [Populus trichocarpa] gi|222861947|gb|EEE99489.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|225446987|ref|XP_002266264.1| PREDICTED: TBC1 domain family member 2A [Vitis vinifera] gi|297739137|emb|CBI28788.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|224068867|ref|XP_002302845.1| predicted protein [Populus trichocarpa] gi|222844571|gb|EEE82118.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224113351|ref|XP_002332603.1| predicted protein [Populus trichocarpa] gi|222834457|gb|EEE72934.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|297833578|ref|XP_002884671.1| RabGAP/TBC domain-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297330511|gb|EFH60930.1| RabGAP/TBC domain-containing protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|18398086|ref|NP_566323.1| RabGAP/TBC domain-containing protein [Arabidopsis thaliana] gi|145332002|ref|NP_001078123.1| RabGAP/TBC domain-containing protein [Arabidopsis thaliana] gi|98960973|gb|ABF58970.1| At3g07890 [Arabidopsis thaliana] gi|110737642|dbj|BAF00761.1| putative GTPase activator protein [Arabidopsis thaliana] gi|332641094|gb|AEE74615.1| RabGAP/TBC domain-containing protein [Arabidopsis thaliana] gi|332641095|gb|AEE74616.1| RabGAP/TBC domain-containing protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|356554560|ref|XP_003545613.1| PREDICTED: TBC1 domain family member 2A-like [Glycine max] Back     alignment and taxonomy information
>gi|356499495|ref|XP_003518575.1| PREDICTED: TBC1 domain family member 2A-like [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query398
TAIR|locus:2077472400 AT3G07890 [Arabidopsis thalian 1.0 0.995 0.866 9.1e-187
DICTYBASE|DDB_G0275345702 DDB_G0275345 "Rab GTPase-activ 0.706 0.400 0.404 4.3e-54
ZFIN|ZDB-GENE-100922-148946 tbc1d2b "TBC1 domain family, m 0.693 0.291 0.384 4.8e-47
TAIR|locus:2097213 777 AT3G55020 [Arabidopsis thalian 0.582 0.298 0.414 2.6e-46
UNIPROTKB|F1NUZ2964 Gga.54340 "Uncharacterized pro 0.690 0.285 0.390 4.8e-46
UNIPROTKB|F1PRT6834 TBC1D2B "Uncharacterized prote 0.839 0.400 0.350 7.4e-46
UNIPROTKB|F1MC26844 TBC1D2B "Uncharacterized prote 0.914 0.431 0.335 2.1e-45
WB|WBGene00022880908 tbc-2 [Caenorhabditis elegans 0.663 0.290 0.386 2.6e-45
MGI|MGI:1914266965 Tbc1d2b "TBC1 domain family, m 0.690 0.284 0.379 4.5e-45
UNIPROTKB|F6Y8N2927 TBC1D2 "Uncharacterized protei 0.716 0.307 0.368 5.1e-45
TAIR|locus:2077472 AT3G07890 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1811 (642.6 bits), Expect = 9.1e-187, P = 9.1e-187
 Identities = 345/398 (86%), Positives = 365/398 (91%)

Query:     1 MYGTQSKRDLALELQAQIPFLRPSIHARRANITVKFQDLYGFTVEGNVDDVNVLNEVREK 60
             M+G QS+RDL +ELQ+QIP LRPSIHARRANI VKFQDLYGFTVEGNVDDVNVLNEVREK
Sbjct:     1 MFGIQSRRDLTMELQSQIPILRPSIHARRANIVVKFQDLYGFTVEGNVDDVNVLNEVREK 60

Query:    61 VREQGRVWWALEASKGANWYLQPQIASISEGIAXXXXXXXXXXANAITLKKLIRKGIPPV 120
             VR QGRVWWALEASKGANWYLQP+I  I +GIA           NAITLK+LIRKGIPPV
Sbjct:    61 VRNQGRVWWALEASKGANWYLQPEILLIGDGIALKTSLKLSTLTNAITLKRLIRKGIPPV 120

Query:   121 LRPKVWFSLSGAAKKKSTVPESYYNDLTKAVEGKVTPATKQIDHDLPRTFPGHPWLDTPD 180
             LRPKVWFSLSGAAKKKSTVPESYY+DLTKAVEG VTPAT+QIDHDLPRTFPGHPWLDTP+
Sbjct:   121 LRPKVWFSLSGAAKKKSTVPESYYSDLTKAVEGMVTPATRQIDHDLPRTFPGHPWLDTPE 180

Query:   181 GHATLRRVLVGYSFRDSDVGYCQGLNYVAALLLLVMKTEEDAFWMLAVLLENVLVNDCYT 240
             GHA LRRVLVGYSFRDSDVGYCQGLNYVAALLLLVMKTEEDAFWMLAVLLENVLV DCYT
Sbjct:   181 GHAALRRVLVGYSFRDSDVGYCQGLNYVAALLLLVMKTEEDAFWMLAVLLENVLVRDCYT 240

Query:   241 NNLSGCHVEQRVFKDLLVKQCPRIASHLEALDFDVSLVATEWFLCLFSKSLPSETTLRVW 300
              NLSGCHVEQRVFKDLL ++C RIA+HLE + FDVSLVATEWFLCLFSKSLPSETTLRVW
Sbjct:   241 TNLSGCHVEQRVFKDLLAQKCSRIATHLEDMGFDVSLVATEWFLCLFSKSLPSETTLRVW 300

Query:   301 DVLFYEGAKVLFHVALAIFKMREDELLVTHHVGDVINILQRTTHHLFDPDELLTVAFDKI 360
             DVLFYEGAKVLFH ALAIFKM+E+ELL+TH VGDVINILQ+T+H LFDPDELLTVAF+KI
Sbjct:   301 DVLFYEGAKVLFHAALAIFKMKENELLMTHQVGDVINILQKTSHQLFDPDELLTVAFEKI 360

Query:   361 GSMTTNTISKQRKKQEPAVMAELDQRLRRLNSLKMDDK 398
             GSMTTNTISKQRKKQEPAVMAELDQRLRRLNSLK   K
Sbjct:   361 GSMTTNTISKQRKKQEPAVMAELDQRLRRLNSLKESGK 398
GO:0005097 "Rab GTPase activator activity" evidence=IEA
GO:0005622 "intracellular" evidence=IEA
GO:0005737 "cytoplasm" evidence=ISM
GO:0032313 "regulation of Rab GTPase activity" evidence=IEA
GO:0030048 "actin filament-based movement" evidence=RCA
GO:0051645 "Golgi localization" evidence=RCA
GO:0051646 "mitochondrion localization" evidence=RCA
GO:0060151 "peroxisome localization" evidence=RCA
DICTYBASE|DDB_G0275345 DDB_G0275345 "Rab GTPase-activating protein 1-like" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-100922-148 tbc1d2b "TBC1 domain family, member 2B" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
TAIR|locus:2097213 AT3G55020 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|F1NUZ2 Gga.54340 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|F1PRT6 TBC1D2B "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|F1MC26 TBC1D2B "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
WB|WBGene00022880 tbc-2 [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms
MGI|MGI:1914266 Tbc1d2b "TBC1 domain family, member 2B" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|F6Y8N2 TBC1D2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query398
smart00164216 smart00164, TBC, Domain in Tre-2, BUB2p, and Cdc16 1e-63
pfam00566206 pfam00566, RabGAP-TBC, Rab-GTPase-TBC domain 3e-63
COG5210496 COG5210, COG5210, GTPase-activating protein [Gener 1e-58
>gnl|CDD|214540 smart00164, TBC, Domain in Tre-2, BUB2p, and Cdc16p Back     alignment and domain information 
 Score =  202 bits (517), Expect = 1e-63
 Identities = 92/217 (42%), Positives = 124/217 (57%), Gaps = 3/217 (1%)

Query: 113 IRKGIPPVLRPKVWFSLSGAAKKKSTVPESYYNDLTKAVEGKVTPATKQIDHDLPRTFPG 172
           +RKG+PP LR  VW  L  A    ++  +  Y+ L K           QI+ DL RTFP 
Sbjct: 1   VRKGVPPSLRGVVWKLLLNAQPMDTSADKDLYSRLLKETAPDDKSIVHQIEKDLRRTFPE 60

Query: 173 HPWLDTPDG--HATLRRVLVGYSFRDSDVGYCQGLNYVAALLLLVMKTEEDAFWMLAVLL 230
           H +    +G    +LRRVL  Y+  + +VGYCQG+N++AA LLLVM+ EEDAFW L  L+
Sbjct: 61  HSFFQDKEGPGQESLRRVLKAYALYNPEVGYCQGMNFLAAPLLLVMEDEEDAFWCLVKLM 120

Query: 231 ENVLVNDCYTNNLSGCHVEQRVFKDLLVKQCPRIASHLEALDFDVSLVATEWFLCLFSKS 290
           E    N  Y  ++SG  ++      L+ +  P +  HL+ L    SL A  WFL LF++ 
Sbjct: 121 ERYGPN-FYLPDMSGLQLDLLQLDRLVKEYDPDLYKHLKDLGITPSLYALRWFLTLFARE 179

Query: 291 LPSETTLRVWDVLFYEGAKVLFHVALAIFKMREDELL 327
           LP E  LR+WDVLF EG+  LF VALA+ K+  D LL
Sbjct: 180 LPLEIVLRIWDVLFAEGSDFLFRVALALLKLHRDVLL 216

Probable Rab-GAPs. Widespread domain present in Gyp6 and Gyp7, thereby giving rise to the notion that it performs a GTP-activator activity on Rab-like GTPases. Length = 216
>gnl|CDD|215997 pfam00566, RabGAP-TBC, Rab-GTPase-TBC domain Back     alignment and domain information
>gnl|CDD|227535 COG5210, COG5210, GTPase-activating protein [General function prediction only] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 398
KOG2058436 consensus Ypt/Rab GTPase activating protein [Intra 100.0
KOG2222 848 consensus Uncharacterized conserved protein, conta 100.0
KOG4347 671 consensus GTPase-activating protein VRP [General f 100.0
KOG2223586 consensus Uncharacterized conserved protein, conta 100.0
smart00164199 TBC Domain in Tre-2, BUB2p, and Cdc16p. Probable R 100.0
COG5210496 GTPase-activating protein [General function predic 100.0
PF00566214 RabGAP-TBC: Rab-GTPase-TBC domain; InterPro: IPR00 100.0
KOG1092484 consensus Ypt/Rab-specific GTPase-activating prote 100.0
KOG4567370 consensus GTPase-activating protein [General funct 100.0
KOG2221267 consensus PDZ-domain interacting protein EPI64, co 100.0
KOG4436948 consensus Predicted GTPase activator NB4S/EVI5 (co 100.0
KOG1093725 consensus Predicted protein kinase (contains TBC a 99.98
KOG1102397 consensus Rab6 GTPase activator GAPCenA and relate 99.97
KOG2224781 consensus Uncharacterized conserved protein, conta 99.91
KOG2595395 consensus Predicted GTPase activator protein [Sign 99.9
KOG1091 625 consensus Ypt/Rab-specific GTPase-activating prote 99.89
KOG2197488 consensus Ypt/Rab-specific GTPase-activating prote 99.85
KOG4436 948 consensus Predicted GTPase activator NB4S/EVI5 (co 99.83
KOG3636 669 consensus Uncharacterized conserved protein, conta 99.72
KOG2801 559 consensus Probable Rab-GAPs [Intracellular traffic 99.61
PF149611296 BROMI: Broad-minded protein 97.94
KOG1648813 consensus Uncharacterized conserved protein, conta 97.32
>KOG2058 consensus Ypt/Rab GTPase activating protein [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information 
Probab=100.00  E-value=6.5e-59  Score=453.74  Aligned_cols=335  Identities=42%  Similarity=0.668  Sum_probs=279.6

Q ss_pred             cccccCCCcccCCcchh----hhHHHHHHHHHHHHHHHHHHHhhhcCCcccccchhcchhhhhhhhhcccccCCChHHHH
Q 015917           35 KFQDLYGFTVEGNVDDV----NVLNEVREKVREQGRVWWALEASKGANWYLQPQIASISEGIALKSSLKLSSLANAITLK  110 (398)
Q Consensus        35 ~~~D~ygf~~~~~~~~~----~~~~~~~~~~~~~~~~w~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~klk  110 (398)
                      ..+|+|||.........    ..+........++..+|.....++ .+|..                 .-.....+.+||
T Consensus        89 ~~~~~~~~~~~~~~~~~~~~~k~~s~~~~~~~r~~~~~~l~~~~~-~~~~~-----------------~~~~~~~s~elk  150 (436)
T KOG2058|consen   89 NGFDQYSLQKLIGLPPSDGYLKWLSSYLAYEERRQLRWELELQSN-IKLHS-----------------PNDFPPRSDELK  150 (436)
T ss_pred             CcccccchhhcccCCcchhhhHHHHHhhhhhhhHHHHHHHHhhhh-hcccc-----------------cccccCCcHHHH
Confidence            46788888753322221    222222223334445677666555 55532                 011235689999


Q ss_pred             HHHHhCCCCchhHHHHHHhhcChhhcccCchHHHHHHHHHhcCCCCchhhhHhhhcCCcCCCC-CCCCCch--hHHHHHH
Q 015917          111 KLIRKGIPPVLRPKVWFSLSGAAKKKSTVPESYYNDLTKAVEGKVTPATKQIDHDLPRTFPGH-PWLDTPD--GHATLRR  187 (398)
Q Consensus       111 ~l~~~GIP~~~R~~vW~~llg~~~~~~~~~~~~y~~l~~~~~~~~~~~~~qI~~Dl~RT~~~~-~~f~~~~--~~~~L~r  187 (398)
                      ++||+|||+++|+.||..++|.......  .++|++++.....+.+++.+||+.|++||||++ +.|.++.  ++.+|+|
T Consensus       151 ~liRkGiP~~~R~~VW~~~~g~~~~~~~--~~~yq~ll~~~~~~~~~~~~qI~~DL~RTfP~n~~~~~~~~~~~~~~LrR  228 (436)
T KOG2058|consen  151 RLIRKGIPPELRGEVWWVLSGARRQLNY--PGYYQELLRKGDEKKSPVVKQIKLDLPRTFPDNFKGFDSEDSDGRQTLRR  228 (436)
T ss_pred             HHHHcCCChhhhhHHHHHHhcchhhccC--chhHHHHHhcCCCccchHHHHHHhccccccCCCcccCCCCCchHHHHHHH
Confidence            9999999999999999999994443322  478999988766666689999999999999999 7888764  4899999


Q ss_pred             HHHHhhhcCCCCCcccchhHHHHHHHHhhccHHHHHHHHHHHHHhhcccccCCCCCccchhHHHHHHHHHHHhcHHHHHH
Q 015917          188 VLVGYSFRDSDVGYCQGLNYVAALLLLVMKTEEDAFWMLAVLLENVLVNDCYTNNLSGCHVEQRVFKDLLVKQCPRIASH  267 (398)
Q Consensus       188 IL~ays~~~p~igY~QGm~~Iaa~lL~~~~~Ee~aF~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~P~L~~h  267 (398)
                      ||.||++|||.||||||||++||++|++|++||+|||+|+.++++++|. ||++++.|.++++.+|+.+++..+|+|+.|
T Consensus       229 vL~Aya~hNp~vGYCQGmNflAallLL~~~~EE~AFW~Lv~iie~~lp~-Yyt~nL~g~qvDQ~VL~~llre~lPkl~~~  307 (436)
T KOG2058|consen  229 VLLAYARHNPSVGYCQGMNFLAALLLLLMPSEEDAFWMLVALIENYLPR-YYTPNLIGSQVDQKVLRELLREKLPKLSLH  307 (436)
T ss_pred             HHHHHHhhCCCCcchhhHHHHHHHHHHhcCChHHHHHHHHHHHHHhchh-hcCchhhhhhccHHHHHHHHHHHCHHHHHh
Confidence            9999999999999999999999999999977999999999999999865 999999999999999999999999999999


Q ss_pred             HHhCCCcchhhhHHHHHhhccCCCCchhHHHHHHHHHhcCcHHHHHHHHHHHHHcHHHHhCCCCHHHHHHHHHhcCCCCC
Q 015917          268 LEALDFDVSLVATEWFLCLFSKSLPSETTLRVWDVLFYEGAKVLFHVALAIFKMREDELLVTHHVGDVINILQRTTHHLF  347 (398)
Q Consensus       268 L~~~~i~~~~~~~~WfltlF~~~lp~~~~lriWD~~l~eG~~~l~~valail~~~~~~Ll~~~~~~e~~~~L~~~~~~~~  347 (398)
                      |..++++..+++.+||+|+|++++|.++++||||++|+||.+++|++|+|+++.++++|+++.+..++++++..++...+
T Consensus       308 l~~~~~~~~l~t~~wfLt~f~d~lP~~t~LrIwD~~f~eGskvlfr~Alai~k~~ee~il~~~~~~~i~~~~~~~~~~~~  387 (436)
T KOG2058|consen  308 LEGNGVDASLETLPWFLTLFVDILPSETVLRIWDCLFYEGSKVLFRVALAILKKHEEEILKEDSSKEILRVLPDLTKRSI  387 (436)
T ss_pred             hhhcCCCeeeeehhhhHHHhcccccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHhh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999988888


Q ss_pred             ChhhHHHHHHhhcCCCCHHHHHHHHHHhHHHHHHHHHHHHHHhhcCC
Q 015917          348 DPDELLTVAFDKIGSMTTNTISKQRKKQEPAVMAELDQRLRRLNSLK  394 (398)
Q Consensus       348 d~~~li~~A~~~~~~l~~~~i~~~r~~~~~~~~~e~~~~~~~~~~~~  394 (398)
                      +.+   +.||.....+....+...+..+ +.+.+.+-.+.+..+...
T Consensus       388 ~~~---~~~f~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~  430 (436)
T KOG2058|consen  388 DPD---QDAFGLANKLTISKIPIQQVLQ-PELKDSLADRLRDSARLS  430 (436)
T ss_pred             hhh---hhhhhcccccccccCchhhhhH-HHhhhhhhhhcccccccc
Confidence            888   8899988888888888777766 666666666555554433

>KOG2222 consensus Uncharacterized conserved protein, contains TBC, SH3 and RUN domains [Signal transduction mechanisms; General function prediction only] Back     alignment and domain information
>KOG4347 consensus GTPase-activating protein VRP [General function prediction only] Back     alignment and domain information
>KOG2223 consensus Uncharacterized conserved protein, contains TBC domain [Signal transduction mechanisms; General function prediction only] Back     alignment and domain information
>smart00164 TBC Domain in Tre-2, BUB2p, and Cdc16p Back     alignment and domain information
>COG5210 GTPase-activating protein [General function prediction only] Back     alignment and domain information
>PF00566 RabGAP-TBC: Rab-GTPase-TBC domain; InterPro: IPR000195 Identification of a TBC domain in GYP6_YEAST and GYP7_YEAST, which are GTPase activator proteins of yeast Ypt6 and Ypt7, imply that these domains are GTPase activator proteins of Rab-like small GTPases [] Back     alignment and domain information
>KOG1092 consensus Ypt/Rab-specific GTPase-activating protein GYP1 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG4567 consensus GTPase-activating protein [General function prediction only] Back     alignment and domain information
>KOG2221 consensus PDZ-domain interacting protein EPI64, contains TBC domain [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG4436 consensus Predicted GTPase activator NB4S/EVI5 (contains TBC domain)/Calmodulin-binding protein Pollux (contains PTB and TBC domains) [General function prediction only] Back     alignment and domain information
>KOG1093 consensus Predicted protein kinase (contains TBC and RHOD domains) [General function prediction only] Back     alignment and domain information
>KOG1102 consensus Rab6 GTPase activator GAPCenA and related TBC domain proteins [General function prediction only] Back     alignment and domain information
>KOG2224 consensus Uncharacterized conserved protein, contains TBC domain [Signal transduction mechanisms; General function prediction only] Back     alignment and domain information
>KOG2595 consensus Predicted GTPase activator protein [Signal transduction mechanisms] Back     alignment and domain information
>KOG1091 consensus Ypt/Rab-specific GTPase-activating protein GYP6 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG2197 consensus Ypt/Rab-specific GTPase-activating protein GYP7 and related proteins [Signal transduction mechanisms] Back     alignment and domain information
>KOG4436 consensus Predicted GTPase activator NB4S/EVI5 (contains TBC domain)/Calmodulin-binding protein Pollux (contains PTB and TBC domains) [General function prediction only] Back     alignment and domain information
>KOG3636 consensus Uncharacterized conserved protein, contains TBC and Rhodanese domains [General function prediction only] Back     alignment and domain information
>KOG2801 consensus Probable Rab-GAPs [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF14961 BROMI: Broad-minded protein Back     alignment and domain information
>KOG1648 consensus Uncharacterized conserved protein, contains RUN, BRK and TBC domains [General function prediction only] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query398
3hzj_A310 Crystal Structure Of The Rabgap Domain Of The Rabga 2e-30
3qyb_A301 X-Ray Crystal Structure Of Human Tbc1d4 (As160) Rab 1e-26
3qye_A331 Crystal Structure Of Human Tbc1d1 Rabgap Domain Len 2e-25
2qq8_A334 Crystal Structure Of The Putative Rabgap Domain Of 5e-17
3dzx_A346 Crystal Structure Of The Rabgap Domain Of Human Tbc 1e-11
2g77_A410 Crystal Structure Of Gyp1 Tbc Domain In Complex Wit 3e-10
1fkm_A396 Crystal Structure Of The YptRAB-Gap Domain Of Gyp1p 6e-10
2qfz_A345 Crystal Structure Of Human Tbc1 Domain Family Membe 8e-09
>pdb|3HZJ|A Chain A, Crystal Structure Of The Rabgap Domain Of The Rabgap1l Protein Length = 310 Back     alignment and structure 
Iteration: 1

 Score =  130 bits (326), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 74/221 (33%), Positives = 116/221 (52%), Gaps = 9/221 (4%)
Query: 109 LKKLIRKGIPPVLRPKVWFSLSGAAKKKSTVPESYYNDLTKAVEGKVTPATKQIDHDLPR 168
           L  L++ G+P  LR +VW  L+G    ++ +      D  + +  K +     I  D+ R
Sbjct: 26  LSTLVKSGVPEALRAEVWQLLAGCHDNQAXL------DRYRILITKDSAQESVITRDIHR 79
Query: 169 TFPGHPWL-DTP-DGHATLRRVLVGYSFRDSDVGYCQGLNYVAALLLLVMKTEEDAFWML 226
           TFP H +  DT  DG  +L ++   YS  D D+GYCQG +++AA+LLL    EE AF +L
Sbjct: 80  TFPAHDYFKDTGGDGQESLYKICKAYSVYDEDIGYCQGQSFLAAVLLL-HXPEEQAFCVL 138
Query: 227 AVLLENVLVNDCYTNNLSGCHVEQRVFKDLLVKQCPRIASHLEALDFDVSLVATEWFLCL 286
             +  +  + D Y NN    H +    + L  +Q P + SH   L+ +    A++WFL L
Sbjct: 139 VKIXYDYGLRDLYRNNFEDLHCKFYQLERLXQEQLPDLHSHFSDLNLEAHXYASQWFLTL 198
Query: 287 FSKSLPSETTLRVWDVLFYEGAKVLFHVALAIFKMREDELL 327
           F+   P      + D+L  EG  ++FHVALA+ K  +++LL
Sbjct: 199 FTAKFPLCXVFHIIDLLLCEGLNIIFHVALALLKTSKEDLL 239
>pdb|3QYB|A Chain A, X-Ray Crystal Structure Of Human Tbc1d4 (As160) Rabgap Domain Length = 301 Back     alignment and structure
>pdb|3QYE|A Chain A, Crystal Structure Of Human Tbc1d1 Rabgap Domain Length = 331 Back     alignment and structure
>pdb|2QQ8|A Chain A, Crystal Structure Of The Putative Rabgap Domain Of Human Tbc1 Domain Family Member 14 Length = 334 Back     alignment and structure
>pdb|3DZX|A Chain A, Crystal Structure Of The Rabgap Domain Of Human Tbc1d22b Length = 346 Back     alignment and structure
>pdb|2G77|A Chain A, Crystal Structure Of Gyp1 Tbc Domain In Complex With Rab33 Gtpase Bound To Gdp And Alf3 Length = 410 Back     alignment and structure
>pdb|1FKM|A Chain A, Crystal Structure Of The YptRAB-Gap Domain Of Gyp1p Length = 396 Back     alignment and structure
>pdb|2QFZ|A Chain A, Crystal Structure Of Human Tbc1 Domain Family Member 22a Length = 345 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query398
3qye_A331 TBC1 domain family member 1; rabgap, RAB, myocytes 1e-103
3hzj_A310 Rabgap1L, RAB GTPase-activating protein 1-like; st 1e-100
2qq8_A334 TBC1 domain family member 14; structural genomics 5e-94
2qfz_A345 TBC1 domain family member 22A; RAB-GAP, GTPase act 4e-62
1fkm_A396 Protein (GYP1P), ORF YOR070C; GAP, YPT/RAB protein 2e-61
3qwl_A294 TBC1 domain family member 7; RAB GTPase activation 5e-48
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 7e-05
>3qye_A TBC1 domain family member 1; rabgap, RAB, myocytes, hydrolase activator; 2.20A {Homo sapiens} PDB: 3qyb_A Length = 331 Back     alignment and structure
 Score =  307 bits (787), Expect = e-103
 Identities = 79/293 (26%), Positives = 139/293 (47%), Gaps = 22/293 (7%)

Query: 94  LKSSLKLSSLANAITLKKLIRKGIPPVLRPKVWFSLSGAAKKKSTVP------ESYYNDL 147
           L +  +     +   +   + +G+P   R ++W  L+     K   P      +  Y +L
Sbjct: 37  LSTPGRSKIKFDMEKMHSAVGQGVPRHHRGEIWKFLAEQFHLKHQFPSKQQPKDVPYKEL 96

Query: 148 TKAVEGKVTPATKQIDHDLPRTFPGHPWLDTPDGH--ATLRRVLVGYSFRDSDVGYCQGL 205
            K    ++T     I  DL RTFP HP+     G    +L  +L  YS  D +VGYCQGL
Sbjct: 97  LK----QLTSQQHAILIDLGRTFPTHPYFSAQLGAGQLSLYNILKAYSLLDQEVGYCQGL 152

Query: 206 NYVAALLLLVMKTEEDAFWMLAVLLENVLVNDCYTNNLSGCHVEQRVFKDLLVKQCPRIA 265
           ++VA +LLL M +EE+AF ML  L+ ++ +   Y  ++    ++      LL      + 
Sbjct: 153 SFVAGILLLHM-SEEEAFKMLKFLMFDMGLRKQYRPDMIILQIQMYQLSRLLHDYHRDLY 211

Query: 266 SHLEALDFDVSLVATEWFLCLFSKSLPSETTLRVWDVLFYEGAKVLFHVALAIFKMREDE 325
           +HLE  +   SL A  WFL +F+   P     RV+D++F +G +V+F VAL++    +  
Sbjct: 212 NHLEEHEIGPSLYAAPWFLTMFASQFPLGFVARVFDMIFLQGTEVIFKVALSLLGSHKPL 271

Query: 326 LLVTHHVGDVINILQRTTHHLF--DPDELLTVAFDKIGSMTTNTISKQRKKQE 376
           +L   ++  +++ ++ T  +L     ++ +   F+         I+KQ +  E
Sbjct: 272 ILQHENLETIVDFIKSTLPNLGLVQMEKTINQVFEM-------DIAKQLQAYE 317
>3hzj_A Rabgap1L, RAB GTPase-activating protein 1-like; structural genomics consortium, SGC, alternative splicing, GTPase activation, phosphoprotein; 2.30A {Homo sapiens} Length = 310 Back     alignment and structure
>2qq8_A TBC1 domain family member 14; structural genomics consortium, RAB-GAP, SGC, GTPase activation, hydrolase activator; 2.00A {Homo sapiens} Length = 334 Back     alignment and structure
>2qfz_A TBC1 domain family member 22A; RAB-GAP, GTPase activator, structural genomics, structural genomics consortium, SGC, hydrolase activator; 2.10A {Homo sapiens} PDB: 3dzx_A Length = 345 Back     alignment and structure
>1fkm_A Protein (GYP1P), ORF YOR070C; GAP, YPT/RAB protein, vesicular trafficking, endocytosis, hydrolase, GTPase activation; 1.90A {Saccharomyces cerevisiae} SCOP: a.69.2.1 a.69.2.1 PDB: 2g77_A* Length = 396 Back     alignment and structure
>3qwl_A TBC1 domain family member 7; RAB GTPase activation, structural genomics consortium, TBC D SGC, hydrolase activator; 1.90A {Homo sapiens} Length = 294 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query398
3hzj_A310 Rabgap1L, RAB GTPase-activating protein 1-like; st 100.0
2qq8_A334 TBC1 domain family member 14; structural genomics 100.0
3qye_A331 TBC1 domain family member 1; rabgap, RAB, myocytes 100.0
2qfz_A345 TBC1 domain family member 22A; RAB-GAP, GTPase act 100.0
1fkm_A396 Protein (GYP1P), ORF YOR070C; GAP, YPT/RAB protein 100.0
4hl4_A292 TBC1 domain family member 20; rabgap, RAB1B, hydro 100.0
3qwl_A294 TBC1 domain family member 7; RAB GTPase activation 100.0
>3hzj_A Rabgap1L, RAB GTPase-activating protein 1-like; structural genomics consortium, SGC, alternative splicing, GTPase activation, phosphoprotein; 2.30A {Homo sapiens} Back     alignment and structure
Probab=100.00  E-value=5.2e-55  Score=421.54  Aligned_cols=269  Identities=30%  Similarity=0.564  Sum_probs=241.0

Q ss_pred             CChHHHHHHHHhCCCCchhHHHHHHhhcChhhcccCchHHHHHHHHHhcCCCCchhhhHhhhcCCcCCCCCCCCCc--hh
Q 015917          104 ANAITLKKLIRKGIPPVLRPKVWFSLSGAAKKKSTVPESYYNDLTKAVEGKVTPATKQIDHDLPRTFPGHPWLDTP--DG  181 (398)
Q Consensus       104 ~~~~klk~l~~~GIP~~~R~~vW~~llg~~~~~~~~~~~~y~~l~~~~~~~~~~~~~qI~~Dl~RT~~~~~~f~~~--~~  181 (398)
                      .++++|++++++|||+++|+.||+.++|+......  .+.|.++++    ..++..++|++|++||+|++++|..+  .+
T Consensus        21 ~~~~~l~~l~~~GIP~~lR~~vW~~llg~~~~~~~--~~~Y~~l~~----~~~~~~~~I~~Dv~Rt~p~~~~f~~~~~~~   94 (310)
T 3hzj_A           21 ARPKGLSTLVKSGVPEALRAEVWQLLAGCHDNQAM--LDRYRILIT----KDSAQESVITRDIHRTFPAHDYFKDTGGDG   94 (310)
T ss_dssp             SCCTTHHHHHHHCCCGGGHHHHHHHHTTCCCCHHH--HHHHHHHTT----SCCTTHHHHHHHHTTSSTTSTTTSSTTSHH
T ss_pred             cCHHHHHHHHHCCCCHHHHHHHHHHHHCCCcchhH--HHHHHHHHh----ccCCcHHHHHHHHHhhCCCchhhcCCCchh
Confidence            36789999999999999999999999998653221  245766643    34677899999999999999999876  57


Q ss_pred             HHHHHHHHHHhhhcCCCCCcccchhHHHHHHHHhhccHHHHHHHHHHHHHhhcccccCCCCCccchhHHHHHHHHHHHhc
Q 015917          182 HATLRRVLVGYSFRDSDVGYCQGLNYVAALLLLVMKTEEDAFWMLAVLLENVLVNDCYTNNLSGCHVEQRVFKDLLVKQC  261 (398)
Q Consensus       182 ~~~L~rIL~ays~~~p~igY~QGm~~Iaa~lL~~~~~Ee~aF~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~  261 (398)
                      ++.|+|||.||+.+||++|||||||+|||+||+++ +|++|||||+++++++.++++|.+++++++..+.+++.+++.++
T Consensus        95 ~~~L~~IL~ay~~~~p~igY~QGm~~iaa~lL~~~-~e~~aF~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~  173 (310)
T 3hzj_A           95 QESLYKICKAYSVYDEDIGYCQGQSFLAAVLLLHM-PEEQAFCVLVKIMYDYGLRDLYRNNFEDLHCKFYQLERLMQEQL  173 (310)
T ss_dssp             HHHHHHHHHHHHHHCTTTCSCTTHHHHHHHHHHHS-CHHHHHHHHHHHHHTSCGGGGTHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHCCCCCccCCHHHHHHHHHHhC-CHHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHHHHHHhC
Confidence            99999999999999999999999999999999999 89999999999999887789999999999999999999999999


Q ss_pred             HHHHHHHHhCCCcchhhhHHHHHhhccCCCCchhHHHHHHHHHhcCcHHHHHHHHHHHHHcHHHHhCCCCHHHHHHHHH-
Q 015917          262 PRIASHLEALDFDVSLVATEWFLCLFSKSLPSETTLRVWDVLFYEGAKVLFHVALAIFKMREDELLVTHHVGDVINILQ-  340 (398)
Q Consensus       262 P~L~~hL~~~~i~~~~~~~~WfltlF~~~lp~~~~lriWD~~l~eG~~~l~~valail~~~~~~Ll~~~~~~e~~~~L~-  340 (398)
                      |+||+||.+.|+++..|+.+||+|+|++.+|++.++||||+|+++|.++++++|+|++..++++|+++ +.++++++++ 
T Consensus       174 p~L~~hL~~~~i~~~~~~~~W~ltlF~~~lp~~~~~riwD~~l~~g~~~l~~v~lail~~~~~~Ll~~-d~~~~l~~l~~  252 (310)
T 3hzj_A          174 PDLHSHFSDLNLEAHMYASQWFLTLFTAKFPLCMVFHIIDLLLCEGLNIIFHVALALLKTSKEDLLQA-DFEGALKFFRV  252 (310)
T ss_dssp             HHHHHHHHHHTCCGGGTSHHHHHHTTTTTSCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHTHHHHHTC-CHHHHHHHHHT
T ss_pred             hHHHHHHHHcCCChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHHHcC-CHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999998 7999999997 


Q ss_pred             hcCCC---CCChhhHHHHHHhhcCCCCHHHHHHHHHHhHHHHHHH
Q 015917          341 RTTHH---LFDPDELLTVAFDKIGSMTTNTISKQRKKQEPAVMAE  382 (398)
Q Consensus       341 ~~~~~---~~d~~~li~~A~~~~~~l~~~~i~~~r~~~~~~~~~e  382 (398)
                      ++|..   ..|++.+++.|+..  .++...+.+.+++......+|
T Consensus       253 ~lp~~~~~~~d~~~ll~~A~~l--~~~~~~l~~~~~ey~~~~~~~  295 (310)
T 3hzj_A          253 QLPKRYRAEENARRLMEQACNI--KVPTKKLKKYEKEYQTMRESQ  295 (310)
T ss_dssp             HHHHTTCSHHHHHHHHHHHHHS--CCCHHHHHHHHHHHHHHC---
T ss_pred             hCcccccccccHHHHHHHHHhc--CCCHHHHHHHHHHHHHHHHHH
Confidence            44433   24789999999987  599999999999887744443
>2qq8_A TBC1 domain family member 14; structural genomics consortium, RAB-GAP, SGC, GTPase activation, hydrolase activator; 2.00A {Homo sapiens} Back     alignment and structure
>3qye_A TBC1 domain family member 1; rabgap, RAB, myocytes, hydrolase activator; 2.20A {Homo sapiens} PDB: 3qyb_A Back     alignment and structure
>2qfz_A TBC1 domain family member 22A; RAB-GAP, GTPase activator, structural genomics, structural genomics consortium, SGC, hydrolase activator; 2.10A {Homo sapiens} PDB: 3dzx_A Back     alignment and structure
>1fkm_A Protein (GYP1P), ORF YOR070C; GAP, YPT/RAB protein, vesicular trafficking, endocytosis, hydrolase, GTPase activation; 1.90A {Saccharomyces cerevisiae} SCOP: a.69.2.1 a.69.2.1 PDB: 2g77_A* Back     alignment and structure
>4hl4_A TBC1 domain family member 20; rabgap, RAB1B, hydrolase activator, catalytic domain, F GTPase-activating proteins, RAB GTP-binding protein, GTP HY; 2.20A {Homo sapiens} PDB: 4hlq_A* Back     alignment and structure
>3qwl_A TBC1 domain family member 7; RAB GTPase activation, structural genomics consortium, TBC D SGC, hydrolase activator; 1.90A {Homo sapiens} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 398
d1fkma1194 a.69.2.1 (A:249-442) Ypt/Rab-GAP domain of gyp1p { 5e-30
d1fkma2188 a.69.2.1 (A:443-630) Ypt/Rab-GAP domain of gyp1p { 6e-17
>d1fkma1 a.69.2.1 (A:249-442) Ypt/Rab-GAP domain of gyp1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 194 Back     information, alignment and structure

class: All alpha proteins
fold: Left-handed superhelix
superfamily: Ypt/Rab-GAP domain of gyp1p
family: Ypt/Rab-GAP domain of gyp1p
domain: Ypt/Rab-GAP domain of gyp1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  112 bits (281), Expect = 5e-30
 Identities = 43/181 (23%), Positives = 63/181 (34%), Gaps = 39/181 (21%)

Query: 95  KSSLKLSSLANAITLKKLIRKGIPPVLRPKVWFSLSGAAKKKSTVPESYYNDLTKAVEGK 154
            + LK  ++ N   L+++   GIP + RP VW  L G     +   E +     K     
Sbjct: 11  DNILKDKTIINQQDLRQISWNGIPKIHRPVVWKLLIGYLPVNTKRQEGFLQRKRKEYRDS 70

Query: 155 V-----------TPATKQIDHDLPRTFPGHPWLDTPDGHATLRRVLVGYSFRDSDVGYCQ 203
           +            P   QI+ D+PRT P  P         +L+R+L  ++ R    GY Q
Sbjct: 71  LKHTFSDQHSRDIPTWHQIEIDIPRTNPHIPLYQFKSVQNSLQRILYLWAIRHPASGYVQ 130

Query: 204 GLNYVAALLLLVMKT----------------------------EEDAFWMLAVLLENVLV 235
           G+N +         T                            E D FW L  LLE +  
Sbjct: 131 GINDLVTPFFETFLTEYLPPSQIDDVEIKDPSTYMVDEQITDLEADTFWCLTKLLEQITD 190

Query: 236 N 236
           N
Sbjct: 191 N 191
>d1fkma2 a.69.2.1 (A:443-630) Ypt/Rab-GAP domain of gyp1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 188 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query398
d1fkma1194 Ypt/Rab-GAP domain of gyp1p {Baker's yeast (Saccha 99.96
d1fkma2188 Ypt/Rab-GAP domain of gyp1p {Baker's yeast (Saccha 99.78
>d1fkma1 a.69.2.1 (A:249-442) Ypt/Rab-GAP domain of gyp1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
class: All alpha proteins
fold: Left-handed superhelix
superfamily: Ypt/Rab-GAP domain of gyp1p
family: Ypt/Rab-GAP domain of gyp1p
domain: Ypt/Rab-GAP domain of gyp1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.96  E-value=4e-30  Score=228.98  Aligned_cols=136  Identities=32%  Similarity=0.523  Sum_probs=109.9

Q ss_pred             CCChHHHHHHHHhCCCCchhHHHHHHhhcChhhcccCch-------HHHHHHHHHhcC----CCCchhhhHhhhcCCcCC
Q 015917          103 LANAITLKKLIRKGIPPVLRPKVWFSLSGAAKKKSTVPE-------SYYNDLTKAVEG----KVTPATKQIDHDLPRTFP  171 (398)
Q Consensus       103 ~~~~~klk~l~~~GIP~~~R~~vW~~llg~~~~~~~~~~-------~~y~~l~~~~~~----~~~~~~~qI~~Dl~RT~~  171 (398)
                      +.+.++||+++++|||+++|+.||+.++|+.+...+...       ..|....+....    .+.+..+||++||+||+|
T Consensus        19 ~i~~~~lr~l~~~Gip~~lR~~vW~~llg~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~I~~Dv~RT~~   98 (194)
T d1fkma1          19 IINQQDLRQISWNGIPKIHRPVVWKLLIGYLPVNTKRQEGFLQRKRKEYRDSLKHTFSDQHSRDIPTWHQIEIDIPRTNP   98 (194)
T ss_dssp             BCCHHHHHHHHTTCCCGGGHHHHHHHHTTCSCSBGGGHHHHHHHHHHHHHHHHHHTSSSSCSTHHHHHHHHHHHGGGSST
T ss_pred             CCCHHHHHHHHHcCCChHHHHHHHHHHHhhcCCchhhHHHHHHHHhhhhhhhhhhhhhcccccchHHHHHHHHHHHhcCC
Confidence            358899999999999999999999999998654433222       123333333221    122456899999999999


Q ss_pred             CCCCCCCchhHHHHHHHHHHhhhcCCCCCcccchhHHHHHHHHhhc----------------------------cHHHHH
Q 015917          172 GHPWLDTPDGHATLRRVLVGYSFRDSDVGYCQGLNYVAALLLLVMK----------------------------TEEDAF  223 (398)
Q Consensus       172 ~~~~f~~~~~~~~L~rIL~ays~~~p~igY~QGm~~Iaa~lL~~~~----------------------------~Ee~aF  223 (398)
                      ++++|.++.+++.|+|||.||+.+||++|||||||+|||+|++++.                            .|++||
T Consensus        99 ~~~~f~~~~~~~~L~rIL~~ya~~np~~gY~QGmn~i~a~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ead~F  178 (194)
T d1fkma1          99 HIPLYQFKSVQNSLQRILYLWAIRHPASGYVQGINDLVTPFFETFLTEYLPPSQIDDVEIKDPSTYMVDEQITDLEADTF  178 (194)
T ss_dssp             TSGGGGSHHHHHHHHHHHHHHHHHCTTTCSCTTHHHHHHHHHHHHHGGGSCGGGGGGTTTSCGGGTCCHHHHHHHHHHHH
T ss_pred             cccccccchhHHHHHHHHHHHHHHCCCCCeeecchHHHHHHHHHHhhhhhhhhhhhhhhhcchhhhhhhhhhhhHHHHHH
Confidence            9999999999999999999999999999999999999999998762                            289999


Q ss_pred             HHHHHHHHhhcccccCC
Q 015917          224 WMLAVLLENVLVNDCYT  240 (398)
Q Consensus       224 ~~l~~l~~~~~~~~~~~  240 (398)
                      |||+++|++.  +++|.
T Consensus       179 ~~f~~lm~~i--~d~y~  193 (194)
T d1fkma1         179 WCLTKLLEQI--TDNYI  193 (194)
T ss_dssp             HHHHHHHGGG--GGGSS
T ss_pred             HHHHHHHHhh--hccCC
Confidence            9999999985  45553
>d1fkma2 a.69.2.1 (A:443-630) Ypt/Rab-GAP domain of gyp1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure