Citrus Sinensis ID: 015923

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------40
Protein Sequence
MSSSSAANGNSLPPFLSKIYDMVEDPSTNDIVSWSSSNNSFIVWKVAEFSRDLLPKYFKHSNFSSFVRQLNTYGFRKVDPDRYEFANEGFLRGQKHLLKSISRRKPAQVHGQQQPKLQNSSVGACVEVGKYGLEEEVEILKRDKNVLMQELVRLRQQQQATDRQLHTVGQRVQVMEQRQQQMMSFLAKAMHSPSFLSQLVQQQNDSNRHISGSNKKRRLPRQDEENTVGAYDSSIPNGQIVKFQPSMNEAAKAMLHQIMKMNSPSRLEPTMSNLSTFLIDNIPSANALENGHSSSQISGVTLSEVPPNSGQSNMSTESRFHVPSSAISEIQCSPCVSDSVKVNPTQEKSKHNSGNDTVLPNFPQLQGIASESTISIPDVNFVLKFGSNSFGWNNVHRR
Secondary Structure (PSIPRED)
cccccccccccccHHHHHHHHHHccccccccEEEccccccEEEEccccHHHHHHHcccccccHHHHHHHHccccEEEccccccEEcccccccccHHHHHHHccccccccccccccccccccccccHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccHHHHHHHHHHccHHHccccEEccccccEEEccHHHHHHHcHHHHcccccHHHHHHHHHHccEEEccccccEEccHHHHccHHHHHHHHHccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHcHHHHHcccccccccccccccccccccccccccEEEcccccccHHcccHHHHcccccccccccccccccHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHcccccccccccccccccccccccccccccccccccccccccEEEcccccEEEcccccc
Coil and Loop (DISEMBL)
mssssaangnslppflskiydmvedpstndivswsssnnsFIVWKVAEfsrdllpkyfkhsnfsSFVRQLNtygfrkvdpdryefaneGFLRGQKHLLKSIsrrkpaqvhgqqqpklqnssvgacvevgkygLEEEVEILKRDKNVLMQELVRLRQQQQATDRQLHTVGQRVQVMEQRQQQMMSFLAKAMHSPSFLSQLVQQqndsnrhisgsnkkrrlprqdeentvgaydssipngqivkfqpSMNEAAKAMLHQIMkmnspsrleptmsnLSTFlidnipsanalenghsssqisgvtlsevppnsgqsnmstesrfhvpssaiseiqcspcvsdsvkvnptqekskhnsgndtvlpnfpqlqgiasestisipdvnFVLKFgsnsfgwnnvhrr
Flexible Loop (DISEMBL)
mssssaangnslppFLSKIYDMVEDPSTNDIVSWSSSNNSFIVWKVAEFSRDLLPKYFKHSNFSSFVRQLNTYGFRKVDPDRYEFANEGFLRGQKHLLKSISRRKPaqvhgqqqpklqnssvgaCVEVGKYGLEEEVEILKRDKNVLMQELVRLRqqqqatdrqlHTVGQRVQVMEQRQQQMMSFLAKAMHSPSFLSQLVQQQndsnrhisgsnkkrrlprqdeentvgaydssipngQIVKFQPSMNEAAKAMLHQIMKMNSPSRLEPTMSNLSTFLIDNIPSANALENGHSSSQISGVTLSEVPPNSGQSNMSTESRFHVPSSAISEIQCSPCVSDSVKVNPTQEkskhnsgndtvlpnFPQLQGIASESTISIPDVNFVLKFgsnsfgwnnvhrr
Low Complexity Region (SEG)
MSSSSAANGNSLPPFLSKIYDMVEDPSTNDIVSWSSSNNSFIVWKVAEFSRDLLPKYFKHSNFSSFVRQLNTYGFRKVDPDRYEFANEGFLRGQKHLLKSISRRKPAQVHGQQQPKLQNSSVGACVEVGKYGLEEEVEILKRDKNVLMQELVRLRQQQQATDRQLHTVGqrvqvmeqrqqqmmSFLAKAMHSPSFLSQLVQQQNDSNRHISGSNKKRRLPRQDEENTVGAYDSSIPNGQIVKFQPSMNEAAKAMLHQIMKMNSPSRLEPTMSNLSTFLIDNIPSANALENGHSSSQISGVTLSEVPPNSGQSNMSTESRFHVPSSAISEIQCSPCVSDSVKVNPTQEKSKHNSGNDTVLPNFPQLQGIASESTISIPDVNFVLKFGSNSFGWNNVHRR
Disordered region (IsUnstruct)
***************LSKIYDMVE***TNDIVSWSSSNNSFIVWKVAEFSRDLLPKYFKHSNFSSFVRQLNTYGFRKVDPDRYEFANEGFLRGQKHL************************VGACVEVGKYGLEEEVEILKRDKNVLMQELVRL***************************************************************************************************************************L**************************************************************************************LQGIASESTISIPDVNFVLKFGSNSFGWN*****
Disordered Region (DISOPRED)
****************SKIYDMVEDPSTNDIVSWSSSNNSFIVWKVAEFSRDLLPKYFKHSNFSSFVRQLNTYGFRKVDPDRYEFANEGFLRGQKHLL****************************************************LVRLRQQQQATDRQLHTVGQRVQVMEQRQQQMMSFLA*******************************************************************************************************************************************************************************************************************
Disordered Region (DISEMBL)
*********NSLPPFLSKIYDMVEDPSTNDIVSWSSSNNSFIVWKVAEFSRDLLPKYFKHSNFSSFVRQLNTYGFRKVDPDRYEFANEGFLRGQKHLLKSIS*****************SSVGACVEVGKYGLEEEVEILKRDKNVLMQELVRLRQQQQATDRQLHTVGQRVQVMEQRQQQMMSFLAKAMHSPSFLSQLVQQQNDSNR*******************VGAYDSSIPNGQIVKFQPSMNEAAKAMLHQIMKMNSPSRLEPTMSNLSTFLIDNIPSANALENGHSSSQISGVTLS**********************AISEIQCSPCVSDSV**************NDTVLPNFPQLQGIASESTISIPDVNFVLKFGSNSFGWNNVHRR
Disordered Region (DISPRO)
*********NSLPPFLSKIYDMVEDPSTNDIVSWSSSNNSFIVWKVAEFSRDLLPKYFKHSNFSSFVRQLNTYGFRKVDPDRYEFANEGFLRGQKHLLKSISRR**************************YGLEEEVEILKRDKNVLMQELVRLRQQQQATDRQLHTVGQRVQVMEQRQQQMMSFLAKAMHSPSFLSQLVQQQNDSN******************************GQIVK***SMNEAAKAMLHQIMKMNSPSRLEPTMSNLSTFLIDNI****************************************************************************************ESTISIPDVNFVLKFGSNSFGWNNVH**
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSSSSAANGNSLPPFLSKIYDMVEDPSTNDIVSWSSSNNSFIVWKVAEFSRDLLPKYFKHSNFSSFVRQLNTYGFRKVDPDRYEFANEGFLRGQKHLLKSISRRKPAQVHGQQQPKLQNSSVGACVEVGxxxxxxxxxxxxxxxxxxxxxxxxxxxxQQATDRQLHTVGQRVQVMEQRQQQMMSFLAKAMHSPSFLSQLVQQQNDSNRHISGSNKKRRLPRQDEENTVGAYDSSIPNGQIVKFQPSMNEAAKAMLHQIMKMNSPSRLEPTMSNLSTFLIDNIPSANALENGHSSSQISGVTLSEVPPNSGQSNMSTESRFHVPSSAISEIQCSPCVSDSVKVNPTQEKSKHNSGNDTVLPNFPQLQGIASESTISIPDVNFVLKFGSNSFGWNNVHRR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	398	2.2.26 [Sep-21-2011]
Q84T61	506	Heat stress transcription	yes	no	0.932	0.733	0.571	1e-118
O81821	481	Heat stress transcription	yes	no	0.849	0.702	0.604	1e-109
Q40152	527	Heat shock factor protein	N/A	no	0.884	0.667	0.564	1e-109
P41153	527	Heat shock factor protein	N/A	no	0.884	0.667	0.569	1e-107
Q9SCW5	468	Heat stress transcription	no	no	0.758	0.645	0.655	1e-103
Q9LQM7	485	Heat stress transcription	no	no	0.723	0.593	0.647	1e-102
P41151	495	Heat stress transcription	no	no	0.841	0.676	0.513	7e-95
P41152	351	Heat shock factor protein	N/A	no	0.5	0.566	0.590	6e-67
Q6F388	357	Heat stress transcription	no	no	0.502	0.560	0.577	4e-65
Q9LUH8	406	Heat stress transcription	no	no	0.522	0.512	0.578	3e-64

>sp|Q84T61|HSFA1_ORYSJ Heat stress transcription factor A-1 OS=Oryza sativa subsp. japonica GN=HSFA1 PE=2 SV=1

 Score =  424 bits (1089), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 225/394 (57%), Positives = 283/394 (71%), Gaps = 23/394 (5%)

Query: 3   SSSAANG--NSLPPFLSKIYDMVEDPSTNDIVSWSSSNNSFIVWKVAEFSRDLLPKYFKH 60
            ++ +NG   + PPFL K Y+MV+DP+T+ +VSW   NNSF+VW   EF+RDLLPKYFKH
Sbjct: 24  GAAVSNGVATAPPPFLMKTYEMVDDPATDAVVSWGPGNNSFVVWNTPEFARDLLPKYFKH 83

Query: 61  SNFSSFVRQLNTYGFRKVDPDRYEFANEGFLRGQKHLLKSISRRKPAQVHGQ-QQPKLQN 119
           SNFSSFVRQLNTYGFRKVDPDR+EFANEGFLRGQKHLLK+I+RRKP   + Q QQP+L  
Sbjct: 84  SNFSSFVRQLNTYGFRKVDPDRWEFANEGFLRGQKHLLKTINRRKPTHGNNQVQQPQLPA 143

Query: 120 SSVGACVEVGKYGLEEEVEILKRDKNVLMQELVRLRQQQQATDRQLHTVGQRVQVMEQRQ 179
           + V ACVEVGK+G+EEE+E+LKRDKNVLMQELVRLRQQQQ TD QL T+G+R+Q MEQRQ
Sbjct: 144 APVPACVEVGKFGMEEEIEMLKRDKNVLMQELVRLRQQQQTTDHQLQTLGKRLQGMEQRQ 203

Query: 180 QQMMSFLAKAMHSPSFLSQLVQQQNDSNRHISGSNKKRRLPRQDEENTVGAYDSSIP--N 237
           QQMMSFLAKAMHSP FL+Q VQQ  +S R I  SNKKRRLP+QD     G+ DS     +
Sbjct: 204 QQMMSFLAKAMHSPGFLAQFVQQNENSRRRIVASNKKRRLPKQD-----GSLDSESASLD 258

Query: 238 GQIVKFQPSMNEAAKAMLHQIMKMNSPSRLEPTMSNLSTFLIDN-IPSANALENGHSSSQ 296
           GQIVK+QP +NEAAKAML +I+K++S  R E +M N   FL++N +P+   L++  SS++
Sbjct: 259 GQIVKYQPMINEAAKAMLRKILKLDSSHRFE-SMGNSDNFLLENYMPNGQGLDS-SSSTR 316

Query: 297 ISGVTLSEVPPNSGQSNMSTESRF-HVPSSAISEIQCSPCVSD--------SVKVNPTQE 347
            SGVTL+EVP NSG   ++T S    + S++  +IQC P V D        ++   P+  
Sbjct: 317 NSGVTLAEVPANSGLPYVATSSGLSAICSTSTPQIQC-PVVLDNGIPKEVPNMSAVPSVP 375

Query: 348 KSKHNSGNDTVLPNFPQLQGIASESTISIPDVNF 381
           K+      D  +  FP LQ I +E  + IP   F
Sbjct: 376 KAVAPGPTDINILEFPDLQDIVAEENVDIPGGGF 409

Transcriptional regulator that specifically binds DNA of heat shock promoter elements (HSE).
Oryza sativa subsp. japonica (taxid: 39947)

>sp|O81821|HFA1B_ARATH Heat stress transcription factor A-1b OS=Arabidopsis thaliana GN=HSFA1B PE=2 SV=2

 Score =  395 bits (1016), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 209/346 (60%), Positives = 261/346 (75%), Gaps = 8/346 (2%)

Query: 10  NSLPPFLSKIYDMVEDPSTNDIVSWSSSNNSFIVWKVAEFSRDLLPKYFKHSNFSSFVRQ 69
           NS+PPFLSK YDMV+DP TN++VSWSS NNSF+VW   EFS+ LLPKYFKH+NFSSFVRQ
Sbjct: 23  NSVPPFLSKTYDMVDDPLTNEVVSWSSGNNSFVVWSAPEFSKVLLPKYFKHNNFSSFVRQ 82

Query: 70  LNTYGFRKVDPDRYEFANEGFLRGQKHLLKSISRRKPAQVHGQQQPKLQNSSV-GACVEV 128
           LNTYGFRKVDPDR+EFANEGFLRG+K LLKSI RRKP+ V   QQ     SS  GACVEV
Sbjct: 83  LNTYGFRKVDPDRWEFANEGFLRGRKQLLKSIVRRKPSHVQQNQQQTQVQSSSVGACVEV 142

Query: 129 GKYGLEEEVEILKRDKNVLMQELVRLRQQQQATDRQLHTVGQRVQVMEQRQQQMMSFLAK 188
           GK+G+EEEVE LKRDKNVLMQELVRLRQQQQAT+ QL  VGQ+VQVMEQRQQQMMSFLAK
Sbjct: 143 GKFGIEEEVERLKRDKNVLMQELVRLRQQQQATENQLQNVGQKVQVMEQRQQQMMSFLAK 202

Query: 189 AMHSPSFLSQLVQQ-QNDSNRHISGSNKKRRLPRQDEENTVGAYDSSIPNGQIVKFQPSM 247
           A+ SP FL+QLVQQ  ND NR I GSNKKRRLP  ++EN      + + N QIV++QPS+
Sbjct: 203 AVQSPGFLNQLVQQNNNDGNRQIPGSNKKRRLPVDEQENRGDNVANGL-NRQIVRYQPSI 261

Query: 248 NEAAKAMLHQIMKMNSPSRLEPTMSNLSTFLIDNIPSANALENGHSSSQISGVTLSEVPP 307
           NEAA+ ML Q +  ++  R E   +N  +FL+ ++PS+ +++NG+ SS++SGVTL+E  P
Sbjct: 262 NEAAQNMLRQFLNTSTSPRYESVSNNPDSFLLGDVPSSTSVDNGNPSSRVSGVTLAEFSP 321

Query: 308 NSGQSNMSTESRFHVPSSAISEIQCSPCVSDSVKVNPTQEKSKHNS 353
           N+ QS  +      VP ++++    +  V  ++  +P Q  +  +S
Sbjct: 322 NTVQSATN-----QVPEASLAHHPQAGLVQPNIGQSPAQGAAPADS 362

Transcriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).

Arabidopsis thaliana (taxid: 3702)

>sp|Q40152|HSF8_SOLLC Heat shock factor protein HSF8 OS=Solanum lycopersicum GN=HSF8 PE=3 SV=1

 Score =  394 bits (1011), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 220/390 (56%), Positives = 271/390 (69%), Gaps = 38/390 (9%)

Query: 15  FLSKIYDMVEDPSTNDIVSWSSSNNSFIVWKVAEFSRDLLPKYFKHSNFSSFVRQLNTYG 74
           FL K YDMV+DPST+ IVSWS +NNSF+VW   EF++DLLPKYFKH+NFSSFVRQLNTYG
Sbjct: 40  FLVKTYDMVDDPSTDKIVSWSPTNNSFVVWDPPEFAKDLLPKYFKHNNFSSFVRQLNTYG 99

Query: 75  FRKVDPDRYEFANEGFLRGQKHLLKSISRRKPAQVHG------------QQQPKLQNSSV 122
           FRKVDPDR+EFANEGFLRGQKHLLKSISRRKPA  H             Q QP   ++SV
Sbjct: 100 FRKVDPDRWEFANEGFLRGQKHLLKSISRRKPAHGHAQQQQQPHGNAQQQMQPPGHSASV 159

Query: 123 GACVEVGKYGLEEEVEILKRDKNVLMQELVRLRQQQQATDRQLHTVGQRVQVMEQRQQQM 182
           GACVEVGK+GLEEEVE LKRDKNVLMQELVRLRQQQQATD QL  + QR+Q ME RQQQM
Sbjct: 160 GACVEVGKFGLEEEVERLKRDKNVLMQELVRLRQQQQATDNQLQGMVQRLQGMELRQQQM 219

Query: 183 MSFLAKAMHSPSFLSQLVQQQNDSNRHISGSNKKRRLPRQDEENTVGAYDSSI--PNGQI 240
           MSFLAKA++ P FL+Q VQQQN+SN+ I+  +KKRR+ +QD E    + D S+   +GQI
Sbjct: 220 MSFLAKAVNRPGFLAQFVQQQNESNKRIAEGSKKRRI-KQDIE----SQDPSVTPADGQI 274

Query: 241 VKFQPSMNEAAKAMLHQIMKMNSPSRLEPTMSNLSTFLI-DNIPSANALENGHSSSQISG 299
           VK+QP +NEAAKAML ++ K++S  RL+   ++  +FLI D  P +NA     SS ++SG
Sbjct: 275 VKYQPGINEAAKAMLRELSKLDSSPRLDNFSNSPESFLIGDGSPQSNA-----SSGRVSG 329

Query: 300 VTLSEVPPNSGQSNMSTESRFHVPS--SAISEIQ------CSPCVSDSVK-----VNPTQ 346
           VTL EVPP SG+  ++T S     S   A SE+Q      CS  +++ +      V    
Sbjct: 330 VTLQEVPPTSGKPLLNTASAIAGQSLLPATSEMQSSHLGTCSEIINNQLSNIIPLVGGED 389

Query: 347 EKSKHNSGNDTVLPNFPQLQGIASESTISI 376
                 S +D ++P   QLQGI  E+   +
Sbjct: 390 LHPGSLSASDMIMPELSQLQGILPENNTDV 419

DNA-binding protein that specifically binds heat shock promoter elements (HSE) and activates transcription.

Solanum lycopersicum (taxid: 4081)

>sp|P41153|HSF8_SOLPE Heat shock factor protein HSF8 OS=Solanum peruvianum GN=HSF8 PE=2 SV=1

 Score =  387 bits (995), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 222/390 (56%), Positives = 273/390 (70%), Gaps = 38/390 (9%)

Query: 15  FLSKIYDMVEDPSTNDIVSWSSSNNSFIVWKVAEFSRDLLPKYFKHSNFSSFVRQLNTYG 74
           FL K YDMV+DPST+ IVSWS +NNSF+VW   EF++DLLPKYFKH+NFSSFVRQLNTYG
Sbjct: 42  FLVKTYDMVDDPSTDKIVSWSPTNNSFVVWDPPEFAKDLLPKYFKHNNFSSFVRQLNTYG 101

Query: 75  FRKVDPDRYEFANEGFLRGQKHLLKSISRRKPAQVHGQQ------------QPKLQNSSV 122
           FRKVDPDR+EFANEGFLRGQKHLLKSISRRKPA  H QQ            QP   ++SV
Sbjct: 102 FRKVDPDRWEFANEGFLRGQKHLLKSISRRKPAHGHAQQQQQPHGHAQQQMQPPGHSASV 161

Query: 123 GACVEVGKYGLEEEVEILKRDKNVLMQELVRLRQQQQATDRQLHTVGQRVQVMEQRQQQM 182
           GACVEVGK+GLEEEVE LKRDKNVLMQELVRLRQQQQ+TD QL  + QR+Q ME RQQQM
Sbjct: 162 GACVEVGKFGLEEEVERLKRDKNVLMQELVRLRQQQQSTDNQLQGMVQRLQGMELRQQQM 221

Query: 183 MSFLAKAMHSPSFLSQLVQQQNDSNRHISGSNKKRRLPRQDEENTVGAYDSSI--PNGQI 240
           MSFLAKA++SP FL+Q VQQQN+SN+ I+  +KKRR+ +QD E    + D S+   +GQI
Sbjct: 222 MSFLAKAVNSPGFLAQFVQQQNESNKRIAEGSKKRRI-KQDIE----SQDPSVTPADGQI 276

Query: 241 VKFQPSMNEAAKAMLHQIMKMNSPSRLEPTMSNLSTFLI-DNIPSANALENGHSSSQISG 299
           VK+QP +NEAAKAML ++ K++S  RLE   ++  +FLI D  P +NA     SS ++SG
Sbjct: 277 VKYQPGINEAAKAMLRELSKLDSSPRLENFSNSPESFLIGDGSPQSNA-----SSGRVSG 331

Query: 300 VTLSEVPPNSGQSNMSTESRFHVPS--SAISEIQ------CSPCVSDSVK-----VNPTQ 346
           VTL EVPP SG+  ++T S     S   A SE+Q      CS  +++ +      V    
Sbjct: 332 VTLQEVPPTSGKPLLNTASAIAGQSLLPATSEMQSSHLGTCSEIINNQLSNIIPLVGGED 391

Query: 347 EKSKHNSGNDTVLPNFPQLQGIASESTISI 376
                 S +D ++P   QLQGI  E+   +
Sbjct: 392 LHPGSLSASDMIMPELSQLQGILPENNTDV 421

DNA-binding protein that specifically binds heat shock promoter elements (HSE) and activates transcription.

Solanum peruvianum (taxid: 4082)

>sp|Q9SCW5|HFA1E_ARATH Heat stress transcription factor A-1e OS=Arabidopsis thaliana GN=HSFA1E PE=2 SV=2

 Score =  375 bits (963), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 200/305 (65%), Positives = 246/305 (80%), Gaps = 3/305 (0%)

Query: 2   SSSSAANGNSLPPFLSKIYDMVEDPSTNDIVSWSSSNNSFIVWKVAEFSRDLLPKYFKHS 61
           + SS A  +S+PPFLSK YDMV+DP T+D+VSWSS NNSF+VW V EF++  LPKYFKH+
Sbjct: 11  AKSSTAVMSSIPPFLSKTYDMVDDPLTDDVVSWSSGNNSFVVWNVPEFAKQFLPKYFKHN 70

Query: 62  NFSSFVRQLNTYGFRKVDPDRYEFANEGFLRGQKHLLKSISRRKPAQVHGQQQPKLQNSS 121
           NFSSFVRQLNTYGFRKVDPDR+EFANEGFLRGQK +LKSI RRKPAQV   QQP++Q+SS
Sbjct: 71  NFSSFVRQLNTYGFRKVDPDRWEFANEGFLRGQKQILKSIVRRKPAQVQPPQQPQVQHSS 130

Query: 122 VGACVEVGKYGLEEEVEILKRDKNVLMQELVRLRQQQQATDRQLHTVGQRVQVMEQRQQQ 181
           VGACVEVGK+GLEEEVE L+RDKNVLMQELVRLRQQQQ T+  L  VGQ+V VMEQRQQQ
Sbjct: 131 VGACVEVGKFGLEEEVERLQRDKNVLMQELVRLRQQQQVTEHHLQNVGQKVHVMEQRQQQ 190

Query: 182 MMSFLAKAMHSPSFLSQLVQQQNDSNRHISGSNKKRRLPRQDEENTVGAYDSSIPNGQIV 241
           MMSFLAKA+ SP FL+Q  QQ N++N+HIS SNKKRRLP +D+ N+ G++  +  + QIV
Sbjct: 191 MMSFLAKAVQSPGFLNQFSQQSNEANQHISESNKKRRLPVEDQMNS-GSHGVNGLSRQIV 249

Query: 242 KFQPSMNEAAKAMLHQIMKM-NSPSRLEPTMSNLSTFLIDNIPSANALENGHSSSQISGV 300
           ++Q SMN+A   ML QI +M N+PS  E   SN  +FL+ ++P++N  +NG SS+    V
Sbjct: 250 RYQSSMNDATNTMLQQIQQMSNAPSH-ESLSSNNGSFLLGDVPNSNISDNGSSSNGSPEV 308

Query: 301 TLSEV 305
           TL++V
Sbjct: 309 TLADV 313

Transcriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LQM7|HFA1D_ARATH Heat stress transcription factor A-1d OS=Arabidopsis thaliana GN=HSFA1D PE=2 SV=2

 Score =  371 bits (953), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 198/306 (64%), Positives = 232/306 (75%), Gaps = 18/306 (5%)

Query: 10  NSLPPFLSKIYDMVEDPSTNDIVSWSSSNNSFIVWKVAEFSRDLLPKYFKHSNFSSFVRQ 69
           N+ PPFLSK YDMV+D +T+ IVSWS++NNSFIVWK  EF+RDLLPK FKH+NFSSFVRQ
Sbjct: 33  NAPPPFLSKTYDMVDDHNTDSIVSWSANNNSFIVWKPPEFARDLLPKNFKHNNFSSFVRQ 92

Query: 70  LNTYGFRKVDPDRYEFANEGFLRGQKHLLKSISRRKPAQVHGQ-----QQPKLQNSSVGA 124
           LNTYGFRKVDPDR+EFANEGFLRGQKHLL+SI+RRKPA   GQ     Q    QNSSV A
Sbjct: 93  LNTYGFRKVDPDRWEFANEGFLRGQKHLLQSITRRKPAHGQGQGHQRSQHSNGQNSSVSA 152

Query: 125 CVEVGKYGLEEEVEILKRDKNVLMQELVRLRQQQQATDRQLHTVGQRVQVMEQRQQQMMS 184
           CVEVGK+GLEEEVE LKRDKNVLMQELVRLRQQQQ+TD QL T+ QR+Q ME RQQQ+MS
Sbjct: 153 CVEVGKFGLEEEVERLKRDKNVLMQELVRLRQQQQSTDNQLQTMVQRLQGMENRQQQLMS 212

Query: 185 FLAKAMHSPSFLSQLV---QQQNDSNRHISGSNKKRRLPRQDEENTVGAYDSSIPNGQIV 241
           FLAKA+ SP FLSQ +    QQN+SNR IS ++KKRR  R   +  V   DS+ P+GQIV
Sbjct: 213 FLAKAVQSPHFLSQFLQQQNQQNESNRRISDTSKKRRFKR---DGIVRNNDSATPDGQIV 269

Query: 242 KFQPSMNEAAKAMLHQIMKMNSPSRLEPTMSNLSTFLIDN-IPSANALENGHSSSQISGV 300
           K+QP M+E AKAM  Q+MKM      EP  +    FL+ N   +    E   SS+Q+SG+
Sbjct: 270 KYQPPMHEQAKAMFKQLMKM------EPYKTGDDGFLLGNGTSTTEGTEMETSSNQVSGI 323

Query: 301 TLSEVP 306
           TL E+P
Sbjct: 324 TLKEMP 329

Transcriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).

Arabidopsis thaliana (taxid: 3702)

>sp|P41151|HFA1A_ARATH Heat stress transcription factor A-1a OS=Arabidopsis thaliana GN=HSFA1A PE=1 SV=2

 Score =  347 bits (891), Expect = 7e-95,   Method: Compositional matrix adjust.
 Identities = 203/395 (51%), Positives = 253/395 (64%), Gaps = 60/395 (15%)

Query: 4   SSAANGNSLPP-FLSKIYDMVEDPSTNDIVSWSSSNNSFIVWKVAEFSRDLLPKYFKHSN 62
           ++  N NSLPP FLSK YDMVEDP+T+ IVSWS +NNSFIVW   EFSRDLLPKYFKH+N
Sbjct: 41  ATLLNANSLPPPFLSKTYDMVEDPATDAIVSWSPTNNSFIVWDPPEFSRDLLPKYFKHNN 100

Query: 63  FSSFVRQLNTYGFRKVDPDRYEFANEGFLRGQKHLLKSISRRKPAQVHGQQQPKLQN--- 119
           FSSFVRQLNTYGFRKVDPDR+EFANEGFLRGQKHLLK ISRRK  Q HG      Q+   
Sbjct: 101 FSSFVRQLNTYGFRKVDPDRWEFANEGFLRGQKHLLKKISRRKSVQGHGSSSSNPQSQQL 160

Query: 120 -------SSVGACVEVGKYGLEEEVEILKRDKNVLMQELVRLRQQQQATDRQLHTVGQRV 172
                  +++ +CVEVGK+GLEEEVE LKRDKNVLMQELV+LRQQQQ TD +L  + + +
Sbjct: 161 SQGQGSMAALSSCVEVGKFGLEEEVEQLKRDKNVLMQELVKLRQQQQTTDNKLQVLVKHL 220

Query: 173 QVMEQRQQQMMSFLAKAMHSPSFLSQLVQQQNDSNRHISGSNKKRRLPRQDE----ENTV 228
           QVMEQRQQQ+MSFLAKA+ +P+FLSQ +Q+Q DSN H++ +NKKRRL R+D     E+  
Sbjct: 221 QVMEQRQQQIMSFLAKAVQNPTFLSQFIQKQTDSNMHVTEANKKRRL-REDSTAATESNS 279

Query: 229 GAYDSSIPNGQIVKFQPSMNEAAKAMLHQIMKMNSPSRLEPTMSNLSTFLIDNIPSANAL 288
            ++     +GQIVK+QP  N+   +M+  +MK +                 D  P    L
Sbjct: 280 HSHSLEASDGQIVKYQPLRND---SMMWNMMKTD-----------------DKYP---FL 316

Query: 289 ENGHSSSQISGVTLSEV-PPNSGQSNMSTESRFHVPSSAISEIQCSPCVSDSVKVNPTQE 347
           +   S +Q+SGVTL EV P  SGQS    ++   VPS     +   P  S S+       
Sbjct: 317 DGFSSPNQVSGVTLQEVLPITSGQS----QAYASVPSG--QPLSYLPSTSTSLP------ 364

Query: 348 KSKHNSGNDTVLPNFPQLQGIASESTISIPDVNFV 382
                   DT++P   Q+  +  ES    P  NF+
Sbjct: 365 --------DTIMPETSQIPQLTRESINDFPTENFM 391

Transcriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).

Arabidopsis thaliana (taxid: 3702)

>sp|P41152|HSF30_SOLPE Heat shock factor protein HSF30 OS=Solanum peruvianum GN=HSF30 PE=2 SV=1

 Score =  254 bits (650), Expect = 6e-67,   Method: Compositional matrix adjust.
 Identities = 124/210 (59%), Positives = 158/210 (75%), Gaps = 11/210 (5%)

Query: 13  PPFLSKIYDMVEDPSTNDIVSWSSSNNSFIVWKVAEFSRDLLPKYFKHSNFSSFVRQLNT 72
           PPFLSK Y+MVED ST+ ++SWS++ NSFIVW   +FS  LLP++FKHSNFSSF+RQLNT
Sbjct: 30  PPFLSKTYEMVEDSSTDQVISWSTTRNSFIVWDSHKFSTTLLPRFFKHSNFSSFIRQLNT 89

Query: 73  YGFRKVDPDRYEFANEGFLRGQKHLLKSISRRKPAQVHGQQQPKLQNSSVGACVEVGKYG 132
           YGFRKVDPDR+EFANEGFL GQKHLLK+I RR+     GQ    +     GAC+E+G YG
Sbjct: 90  YGFRKVDPDRWEFANEGFLGGQKHLLKTIKRRRNV---GQ---SMNQQGSGACIEIGYYG 143

Query: 133 LEEEVEILKRDKNVLMQELVRLRQQQQATDRQLHTVGQRVQVMEQRQQQMMSFLAKAMHS 192
           +EEE+E LKRDKNVLM E+V+LRQQQQ+T  Q+  +G++++  E++Q QMMSFLAK   +
Sbjct: 144 MEEELERLKRDKNVLMTEIVKLRQQQQSTRNQIIAMGEKIETQERKQVQMMSFLAKIFSN 203

Query: 193 PSFLSQLVQQQ---NDSNRHISGSNKKRRL 219
           P+FL Q + +Q    D  R   G  +KRRL
Sbjct: 204 PTFLQQYLDKQVHRKDKQRIEVG--QKRRL 231

DNA-binding protein that specifically binds heat shock promoter elements (HSE) and activates transcription.

Solanum peruvianum (taxid: 4082)

>sp|Q6F388|HFA2E_ORYSJ Heat stress transcription factor A-2e OS=Oryza sativa subsp. japonica GN=HSFA2E PE=2 SV=1

 Score =  248 bits (634), Expect = 4e-65,   Method: Compositional matrix adjust.
 Identities = 119/206 (57%), Positives = 152/206 (73%), Gaps = 6/206 (2%)

Query: 13  PPFLSKIYDMVEDPSTNDIVSWSSSNNSFIVWKVAEFSRDLLPKYFKHSNFSSFVRQLNT 72
           PPFL+K YDMV+DP+T+ +VSWS++NNSF+VW    F   LLP+YFKH+NFSSFVRQLNT
Sbjct: 37  PPFLTKTYDMVDDPTTDAVVSWSATNNSFVVWDPHLFGNVLLPRYFKHNNFSSFVRQLNT 96

Query: 73  YGFRKVDPDRYEFANEGFLRGQKHLLKSISRRKPAQVHGQQQPKLQNSSVGACVEVGKYG 132
           YGFRKVDPD++EFANEGFLRGQKHLLKSI RRKP      QQ      S+G+ +EVG +G
Sbjct: 97  YGFRKVDPDKWEFANEGFLRGQKHLLKSIKRRKPPNSSPSQQ------SLGSFLEVGHFG 150

Query: 133 LEEEVEILKRDKNVLMQELVRLRQQQQATDRQLHTVGQRVQVMEQRQQQMMSFLAKAMHS 192
            E E++ LKRDK++LM E+V+LRQ+QQ T   L  + Q++Q  EQ+QQ MM+FL++ MH+
Sbjct: 151 YEGEIDQLKRDKHLLMAEVVKLRQEQQNTKSDLQAMEQKLQGTEQKQQHMMAFLSRVMHN 210

Query: 193 PSFLSQLVQQQNDSNRHISGSNKKRR 218
           P F+ QL  Q           +KKRR
Sbjct: 211 PEFIRQLFSQSEMRKELEEFVSKKRR 236

Transcriptional activator expressed upon environmental stress that specifically binds DNA of heat shock promoter elements (HSE). Involved in heat stress response.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q9LUH8|HFA6B_ARATH Heat stress transcription factor A-6b OS=Arabidopsis thaliana GN=HSFA6b PE=2 SV=1

 Score =  246 bits (627), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 122/211 (57%), Positives = 154/211 (72%), Gaps = 3/211 (1%)

Query: 13  PPFLSKIYDMVEDPSTNDIVSWSSSNNSFIVWKVAEFSRDLLPKYFKHSNFSSFVRQLNT 72
           PPFL+K YD+VED  TN +VSWS SNNSFIVW    FS  LLP++FKH+NFSSFVRQLNT
Sbjct: 60  PPFLTKTYDLVEDSRTNHVVSWSKSNNSFIVWDPQAFSVTLLPRFFKHNNFSSFVRQLNT 119

Query: 73  YGFRKVDPDRYEFANEGFLRGQKHLLKSISRRKPAQVHGQQQPKLQNSSVGA---CVEVG 129
           YGFRKV+PDR+EFANEGFLRGQKHLLK+I RRK +    Q Q    +        C+EVG
Sbjct: 120 YGFRKVNPDRWEFANEGFLRGQKHLLKNIRRRKTSNNSNQMQQPQSSEQQSLDNFCIEVG 179

Query: 130 KYGLEEEVEILKRDKNVLMQELVRLRQQQQATDRQLHTVGQRVQVMEQRQQQMMSFLAKA 189
           +YGL+ E++ L+RDK VLM ELVRLRQQQQ+T   L  + ++++  E +Q+QMMSFLA+A
Sbjct: 180 RYGLDGEMDSLRRDKQVLMMELVRLRQQQQSTKMYLTLIEEKLKKTESKQKQMMSFLARA 239

Query: 190 MHSPSFLSQLVQQQNDSNRHISGSNKKRRLP 220
           M +P F+ QLV+Q+          +KKR+ P
Sbjct: 240 MQNPDFIQQLVEQKEKRKEIEEAISKKRQRP 270

Transcriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	398
224126227	472	predicted protein [Populus trichocarpa]	0.876	0.739	0.661	1e-130
225454755	512	PREDICTED: heat stress transcription fac	0.924	0.718	0.661	1e-129
224138180	484	predicted protein [Populus trichocarpa]	0.886	0.729	0.630	1e-120
255573449	510	Heat shock factor protein HSF8, putative	0.886	0.692	0.615	1e-120
357474297	493	Heat stress transcription factor A-1 [Me	0.937	0.756	0.586	1e-119
357485115	502	Heat stress transcription factor A-1d [M	0.949	0.752	0.592	1e-116
115456675	506	Os03g0854500 [Oryza sativa Japonica Grou	0.932	0.733	0.571	1e-116
359474544	496	PREDICTED: heat shock factor protein HSF	0.917	0.735	0.602	1e-115
147767343	495	hypothetical protein VITISV_017888 [Viti	0.917	0.737	0.602	1e-115
115521209	502	heat shock transcription factor 1 [Medic	0.949	0.752	0.6	1e-115

>gi|224126227|ref|XP_002319787.1| predicted protein [Populus trichocarpa] gi|222858163|gb|EEE95710.1| predicted protein [Populus trichocarpa]

 Score =  469 bits (1208), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 248/375 (66%), Positives = 287/375 (76%), Gaps = 26/375 (6%)

Query: 8   NGNSLPPFLSKIYDMVEDPSTNDIVSWSSSNNSFIVWKVAEFSRDLLPKYFKHSNFSSFV 67
           N N++PPFLSK YDMV+DPST+ +VSWSSSNNSF+VW V EF  DLLPKYFKHSNFSSFV
Sbjct: 10  NTNTVPPFLSKTYDMVDDPSTDSVVSWSSSNNSFVVWNVPEFQTDLLPKYFKHSNFSSFV 69

Query: 68  RQLNTYGFRKVDPDRYEFANEGFLRGQKHLLKSISRRKPAQVHGQQQPKLQNSSVGACVE 127
           RQLNTYGFRKVDPDR+EFANEGFLRGQKHLL+SISR+KP  VHG   P++Q+SSV  CVE
Sbjct: 70  RQLNTYGFRKVDPDRFEFANEGFLRGQKHLLRSISRKKP--VHGNLPPQVQSSSVTTCVE 127

Query: 128 VGKYGLEEEVEILKRDKNVLMQELVRLRQQQQATDRQLHTVGQRVQVMEQRQQQMMSFLA 187
           VGK+GLEEEVE LKRDKNVLMQELVRLRQQQQATD QLHTVGQRVQ MEQRQQQMMSFLA
Sbjct: 128 VGKFGLEEEVERLKRDKNVLMQELVRLRQQQQATDHQLHTVGQRVQGMEQRQQQMMSFLA 187

Query: 188 KAMHSPSFLSQLVQQQNDSNRHISGSNKKRRLPRQDEENTVGAYDSSIPNGQIVKFQPSM 247
           KAM +P FLSQLVQQQN+SNR I+G++KKRRLPRQ+EEN  G    + PNGQI+KF  SM
Sbjct: 188 KAMQNPGFLSQLVQQQNESNRRIAGASKKRRLPRQEEENLAGVQCKTSPNGQIIKFHSSM 247

Query: 248 NEAAKAMLHQIMKMNSPSRLEPTMSNLSTFLIDNIPSANALENGHSSSQISGVTLSEVPP 307
           NEAAKAMLHQI+KMNS  RLEP+M+N    LI N PS+N L++G SS+++SGV LSEV  
Sbjct: 248 NEAAKAMLHQILKMNSSPRLEPSMNNSGPLLIGNHPSSNGLDSGSSSTRMSGVMLSEV-- 305

Query: 308 NSGQSNMSTESRFHVPSSAISEIQCSPCVSDSVKVNPTQEKSKHNSGNDTVLPNFPQLQG 367
                          P+S           +D VK + T E   HNSG +T+LPNF  + G
Sbjct: 306 -------------QSPAS---------VATDYVKTDYTAEMGMHNSGQNTILPNFTAMTG 343

Query: 368 IASESTISIPDVNFV 382
           I    +   P++N  
Sbjct: 344 IVPGGSAGGPNMNIA 358

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225454755|ref|XP_002273949.1| PREDICTED: heat stress transcription factor A-1-like [Vitis vinifera]

 Score =  469 bits (1207), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 254/384 (66%), Positives = 297/384 (77%), Gaps = 16/384 (4%)

Query: 13  PPFLSKIYDMVEDPSTNDIVSWSSSNNSFIVWKVAEFSRDLLPKYFKHSNFSSFVRQLNT 72
           PPFLSK YDMV+D +T+ +VSWSS NNSF+VW V EFSRDLLPKYFKH+NFSSFVRQLNT
Sbjct: 18  PPFLSKTYDMVDDRATDSVVSWSSGNNSFVVWNVPEFSRDLLPKYFKHNNFSSFVRQLNT 77

Query: 73  YGFRKVDPDRYEFANEGFLRGQKHLLKSISRRKPAQVHGQ----------QQPKLQNSSV 122
           YGFRKVDPDR+EFANEGFLRGQKHLLKSISRRK   VH            QQ     SS 
Sbjct: 78  YGFRKVDPDRWEFANEGFLRGQKHLLKSISRRKSTHVHTHNQQLQQQQQQQQQTQVQSSS 137

Query: 123 GACVEVGKYGLEEEVEILKRDKNVLMQELVRLRQQQQATDRQLHTVGQRVQVMEQRQQQM 182
           GACVEVGK+GLEEEVE LKRDKNVLMQELVRLRQQQQ TD QL TVGQRVQ MEQRQQQM
Sbjct: 138 GACVEVGKFGLEEEVERLKRDKNVLMQELVRLRQQQQTTDHQLQTVGQRVQDMEQRQQQM 197

Query: 183 MSFLAKAMHSPSFLSQLVQQQNDSNRHISGSNKKRRLPRQDEENTVGAYDSSIPNGQIVK 242
           MSFLAKA+ SP FL+QLVQQQNDS R I+G NKKRRLP+Q+EE     + ++ P+G++VK
Sbjct: 198 MSFLAKAVQSPGFLAQLVQQQNDSKRRITGVNKKRRLPKQEEEIHSAKHATTAPDGRVVK 257

Query: 243 FQPSMNEAAKAMLHQIMKMNSPSRLEPTMSNLSTFLIDNIPSANALENGHSSSQISGVTL 302
           +QP MNEAAKAML QI+KMN+  R EP++ N   FLID++PS+NAL++  SSS++SGVTL
Sbjct: 258 YQPLMNEAAKAMLRQILKMNATPRREPSI-NPDAFLIDDVPSSNALDSLSSSSRVSGVTL 316

Query: 303 SEVPPNSGQSNMSTESRF---HVPSSAISEIQCSPCV-SDSVKVNPTQEKSKHNSGNDTV 358
           +EVP  SGQS +  ES +   H+ S+ ISE Q SP V +DSVK     E +  NS  DTV
Sbjct: 317 AEVPLTSGQSYLPVESAYSSNHL-SAGISETQSSPTVMTDSVKAAQFPEVNVPNSQEDTV 375

Query: 359 LPNFPQLQGIASESTISIPDVNFV 382
           L +F Q++GI  EST+ IP+V  V
Sbjct: 376 LTDFTQMEGIIPESTVEIPNVGMV 399

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224138180|ref|XP_002326538.1| predicted protein [Populus trichocarpa] gi|222833860|gb|EEE72337.1| predicted protein [Populus trichocarpa]

 Score =  439 bits (1128), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 242/384 (63%), Positives = 286/384 (74%), Gaps = 31/384 (8%)

Query: 6   AANGNSLPPFLSKIYDMVEDPSTNDIVSWSSSNNSFIVWKVAEFSRDLLPKYFKHSNFSS 65
           A+  NS PPFLSK YDMV+DP T+ +VSWSS+NNSF+VW   EF+RDLLPKYFKH+NFSS
Sbjct: 2   ASQSNSPPPFLSKTYDMVDDPETDAVVSWSSTNNSFVVWNPPEFARDLLPKYFKHNNFSS 61

Query: 66  FVRQLNTYGFRKVDPDRYEFANEGFLRGQKHLLKSISRRKPAQVHGQQQP---KLQNSSV 122
           FVRQLNTYGFRKVDPDR+EFANEGFLRGQKHLL++ISRRKPA  H  QQP   + QNS+V
Sbjct: 62  FVRQLNTYGFRKVDPDRWEFANEGFLRGQKHLLRTISRRKPAHGHTNQQPQQARGQNSTV 121

Query: 123 GACVEVGKYGLEEEVEILKRDKNVLMQELVRLRQQQQATDRQLHTVGQRVQVMEQRQQQM 182
           GACVEVGK+GLEEEVE LKRDKNVLMQELVRLRQQQQ+TD QL T+ QR+Q MEQRQQQM
Sbjct: 122 GACVEVGKFGLEEEVERLKRDKNVLMQELVRLRQQQQSTDSQLQTMVQRLQGMEQRQQQM 181

Query: 183 MSFLAKAMHSPSFLSQLVQQQNDSNRHISGSNKKRRLPRQDEENTVGAYDSSIPNGQIVK 242
           MSFLAKAM SP FL+Q VQQQN+S+R I+ +NKKRRL  +D     G   SS P+GQIVK
Sbjct: 182 MSFLAKAMQSPGFLAQFVQQQNESSRRITEANKKRRLKPEDVSENEG---SSAPDGQIVK 238

Query: 243 FQPSMNEAAKAMLHQIMKMNSPSRLEPTMSNLSTFLIDN-IPSANALENGHSSSQISGVT 301
           +QP MNEAAKAML Q+MKM++PSRLE   +NL  FLI N  PS++A ++G SSS++SGVT
Sbjct: 239 YQPQMNEAAKAMLRQVMKMDAPSRLESYDTNLDGFLIGNGSPSSSAKDSGSSSSRMSGVT 298

Query: 302 LSEVPPNSGQSNMSTESRFHVPSSAISEIQCSPCVSDSVKVNPTQEKSKHNSGNDTVLPN 361
           L EVP  SG S        H P +AISEIQ SP ++ S K   +Q               
Sbjct: 299 LQEVPAASGISG-------HGPMAAISEIQSSPHIASSEKATASQ--------------- 336

Query: 362 FPQ--LQGIASESTISIPDVNFVL 383
           FP+  L G     +I IP  + ++
Sbjct: 337 FPESILVGGQGAPSIPIPQADIIM 360

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255573449|ref|XP_002527650.1| Heat shock factor protein HSF8, putative [Ricinus communis] gi|223532955|gb|EEF34721.1| Heat shock factor protein HSF8, putative [Ricinus communis]

 Score =  438 bits (1126), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 237/385 (61%), Positives = 284/385 (73%), Gaps = 32/385 (8%)

Query: 10  NSLPPFLSKIYDMVEDPSTNDIVSWSSSNNSFIVWKVAEFSRDLLPKYFKHSNFSSFVRQ 69
           N+ PPFLSK YDMV+DP+T+ +VSWS +NNSF+VW   EF+RDLLPKYFKH+NFSSFVRQ
Sbjct: 37  NAPPPFLSKTYDMVDDPATDAVVSWSPTNNSFVVWNPPEFARDLLPKYFKHNNFSSFVRQ 96

Query: 70  LNTYGFRKVDPDRYEFANEGFLRGQKHLLKSISRRKPAQVHGQ---QQPKLQNSSVGACV 126
           LNTYGFRKVDPDR+EFANEGFLRGQKHLLKSISRRKPA  HG    QQP  Q+SSVGACV
Sbjct: 97  LNTYGFRKVDPDRWEFANEGFLRGQKHLLKSISRRKPAHGHGHQQAQQPHGQSSSVGACV 156

Query: 127 EVGKYGLEEEVEILKRDKNVLMQELVRLRQQQQATDRQLHTVGQRVQVMEQRQQQMMSFL 186
           EVGK+GLEEEVE LKRDKNVLMQELVRLRQQQQ TD QL T+ QR+Q MEQRQQQMMSFL
Sbjct: 157 EVGKFGLEEEVERLKRDKNVLMQELVRLRQQQQTTDSQLQTMVQRLQGMEQRQQQMMSFL 216

Query: 187 AKAMHSPSFLSQLVQQQNDSNRHISGSNKKRRLPRQD--EENTVGAYDSSIPNGQIVKFQ 244
           AKAM SP F +Q VQQQN+SNR I+ +NKKRRL +QD   EN      S+ P+GQIVK+Q
Sbjct: 217 AKAMQSPGFFAQFVQQQNESNRRITEANKKRRL-KQDGIPENE----SSTSPDGQIVKYQ 271

Query: 245 PSMNEAAKAMLHQIMKMNSPSRLEPTMSN--LSTFLI-DNIPSANALENGHSSSQISGVT 301
           P +NEAAKA+L QIMK N+    E T  N  L  FLI  + P+++ +E+G SS++ISGVT
Sbjct: 272 PLVNEAAKAILRQIMKSNA----EATSYNNGLEGFLIGSDSPTSSRMESGGSSNRISGVT 327

Query: 302 LSEVPPNSGQSNM---STESRFHVPSSAISEIQCSPCVSDSVKVNPTQEKSKHNSGNDTV 358
           L EVPP SGQS     ++    H P+++ISE++ S C+  S K+  +Q            
Sbjct: 328 LQEVPPTSGQSTYLPAASGQTAHGPTTSISEMKSSLCIDGSKKLTASQ------------ 375

Query: 359 LPNFPQLQGIASESTISIPDVNFVL 383
            P+   L G     +ISIP  + V+
Sbjct: 376 FPDISALVGSEEAPSISIPQSDVVM 400

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357474297|ref|XP_003607433.1| Heat stress transcription factor A-1 [Medicago truncatula] gi|357474315|ref|XP_003607442.1| Heat stress transcription factor A-1 [Medicago truncatula] gi|355508488|gb|AES89630.1| Heat stress transcription factor A-1 [Medicago truncatula] gi|355508497|gb|AES89639.1| Heat stress transcription factor A-1 [Medicago truncatula] gi|388511307|gb|AFK43715.1| unknown [Medicago truncatula]

 Score =  434 bits (1116), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 224/382 (58%), Positives = 294/382 (76%), Gaps = 9/382 (2%)

Query: 12  LPPFLSKIYDMVEDPSTNDIVSWSSSNNSFIVWKVAEFSRDLLPKYFKHSNFSSFVRQLN 71
           LPPFLSK YDMV+D ST  IVSW  +NN+F+V    +FS+ +LPKYFKH+NFSSFVRQLN
Sbjct: 10  LPPFLSKTYDMVDDSSTESIVSWGKNNNTFVVLNSTDFSKHILPKYFKHNNFSSFVRQLN 69

Query: 72  TYGFRKVDPDRYEFANEGFLRGQKHLLKSISRRKPAQVHG--QQQPKLQNSSVGACVEVG 129
           TYGFRKVDPDR+EFA+EGFLRGQKHLLK+I+RRK    +G  QQ  K QN  VG+CVEVG
Sbjct: 70  TYGFRKVDPDRWEFAHEGFLRGQKHLLKNINRRKSTHANGNNQQLSKPQNPPVGSCVEVG 129

Query: 130 KYGLEEEVEILKRDKNVLMQELVRLRQQQQATDRQLHTVGQRVQVMEQRQQQMMSFLAKA 189
           K+GL+EEVE LKRDKNVLMQELV+LRQQQQ+TD QL  VGQRVQVMEQRQQQMMSFLAKA
Sbjct: 130 KFGLDEEVERLKRDKNVLMQELVKLRQQQQSTDNQLVNVGQRVQVMEQRQQQMMSFLAKA 189

Query: 190 MHSPSFLSQLVQQQNDSNRHISGSNKKRRLPRQDEENTVGAYDSSIPNGQIVKFQPSMNE 249
           M+SP F++Q  QQQN+SNRH++ + KKRRL  Q+E++       +  +G++VK+QPS+NE
Sbjct: 190 MNSPGFMAQFSQQQNESNRHVT-AGKKRRLQGQEEDSLATKNPHNPLDGRVVKYQPSINE 248

Query: 250 AAKAMLHQIMKMNSPSRLEPTMSNLSTFLIDNIPSANALENGHSSSQISGVTLSEVPPNS 309
           AAK + +Q+++MNS +R++ ++ NL  FLID++PSA  L++  SS+Q+SGVTLS+V P S
Sbjct: 249 AAKTLFNQMLQMNSSARVDSSIKNLDAFLIDDVPSAIPLDSSSSSTQVSGVTLSDVSPIS 308

Query: 310 GQSNMSTESRFHVP--SSAISEIQCSPCV-SDSVKVNPTQEKSKHNSGNDTVLPNFPQLQ 366
           GQS ++ ES+F V   ++++SE+Q SP V +D VK   T E  +  + +   + +F ++ 
Sbjct: 309 GQSCIAVESQFPVSCMTNSMSEVQSSPAVLTDCVK---TAEFPEFTTAHQDNILDFGEVH 365

Query: 367 GIASESTISIPDVNFVLKFGSN 388
           G+A+ES+   PD NFV   G N
Sbjct: 366 GLATESSFMNPDQNFVGSVGEN 387

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357485115|ref|XP_003612845.1| Heat stress transcription factor A-1d [Medicago truncatula] gi|355514180|gb|AES95803.1| Heat stress transcription factor A-1d [Medicago truncatula]

 Score =  424 bits (1091), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 234/395 (59%), Positives = 286/395 (72%), Gaps = 17/395 (4%)

Query: 8   NGNSLPPFLSKIYDMVEDPSTNDIVSWSSSNNSFIVWKVAEFSRDLLPKYFKHSNFSSFV 67
           N N+ PPFLSK YDMV+DPST+ IVSWS++NNSF+VW   EF+RDLLPK+FKH+NFSSFV
Sbjct: 26  NANAPPPFLSKTYDMVDDPSTDAIVSWSATNNSFVVWDPPEFARDLLPKFFKHNNFSSFV 85

Query: 68  RQLNTYGFRKVDPDRYEFANEGFLRGQKHLLKSISRRKPAQVHG---QQQPKLQNSSVGA 124
           RQLNTYGFRKVDPDR+EFANEGFLRGQK LLKSISRRKPA  H     QQP  Q+SSVGA
Sbjct: 86  RQLNTYGFRKVDPDRWEFANEGFLRGQKQLLKSISRRKPAHGHTQQQAQQPHGQSSSVGA 145

Query: 125 CVEVGKYGLEEEVEILKRDKNVLMQELVRLRQQQQATDRQLHTVGQRVQVMEQRQQQMMS 184
           CVEVGK+GLEEEVE LKRDKNVLMQELVRLRQQQQ TD QL T+ QR+Q MEQRQQQMMS
Sbjct: 146 CVEVGKFGLEEEVERLKRDKNVLMQELVRLRQQQQTTDSQLQTMVQRLQGMEQRQQQMMS 205

Query: 185 FLAKAMHSPSFLSQLVQQQNDSNRHISGSNKKRRLPRQD--EENTVGAYDSSIPNGQIVK 242
           FLAKA+ SP F +Q VQQQNDSNR I+  NKKRRL +QD   E T  A   + P+GQIVK
Sbjct: 206 FLAKAVQSPGFFAQFVQQQNDSNRRITEVNKKRRL-KQDGIAETTEQA---TPPDGQIVK 261

Query: 243 FQPSMNEAAKAMLHQIMKMNSPSRLEPTMSNLSTFLI-DNIPSANALENGHSSSQISGVT 301
           +QP MN+ AKAML +IMK ++P R+E    N   +LI D    ++A+++  S+S  SGVT
Sbjct: 262 YQPMMNDTAKAMLRKIMKWDTP-RVESFNKNPDNYLIGDGTSPSSAMDSNSSTSWNSGVT 320

Query: 302 LSEVPPNSGQSN---MSTESRFHVPSSAISEIQCSPCVSDSVKV--NPTQEKSK-HNSGN 355
           L EVPP+S QS    ++T ++ H+PSS   EI   P  + S  V  + T   S    S  
Sbjct: 321 LQEVPPSSVQSTQFPVATGTQGHIPSSEKPEILSVPQAAASANVMKDGTHAASTIPTSQA 380

Query: 356 DTVLPNFPQLQGIASESTISIPDVNFVLKFGSNSF 390
           D ++P+ P +  I  +S + IP+ +++     + F
Sbjct: 381 DVIMPDIPSVPEIVPKSILDIPENDYMAPETDDGF 415

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|115456675|ref|NP_001051938.1| Os03g0854500 [Oryza sativa Japonica Group] gi|75298093|sp|Q84T61.1|HSFA1_ORYSJ RecName: Full=Heat stress transcription factor A-1; AltName: Full=Heat stress transcription factor 13; Short=OsHsf-13; AltName: Full=Heat stress transcription factor 3; Short=rHsf3 gi|29126355|gb|AAO66547.1| putative heat shock transcription factor [Oryza sativa Japonica Group] gi|33591100|gb|AAQ23057.1| heat shock factor RHSF3 [Oryza sativa Japonica Group] gi|108712168|gb|ABF99963.1| Heat shock factor protein HSF8, putative, expressed [Oryza sativa Japonica Group] gi|113550409|dbj|BAF13852.1| Os03g0854500 [Oryza sativa Japonica Group] gi|213959105|gb|ACJ54887.1| heat shock factor [Oryza sativa Japonica Group] gi|215713464|dbj|BAG94601.1| unnamed protein product [Oryza sativa Japonica Group] gi|215741087|dbj|BAG97582.1| unnamed protein product [Oryza sativa Japonica Group]

 Score =  424 bits (1089), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 225/394 (57%), Positives = 283/394 (71%), Gaps = 23/394 (5%)

Query: 3   SSSAANG--NSLPPFLSKIYDMVEDPSTNDIVSWSSSNNSFIVWKVAEFSRDLLPKYFKH 60
            ++ +NG   + PPFL K Y+MV+DP+T+ +VSW   NNSF+VW   EF+RDLLPKYFKH
Sbjct: 24  GAAVSNGVATAPPPFLMKTYEMVDDPATDAVVSWGPGNNSFVVWNTPEFARDLLPKYFKH 83

Query: 61  SNFSSFVRQLNTYGFRKVDPDRYEFANEGFLRGQKHLLKSISRRKPAQVHGQ-QQPKLQN 119
           SNFSSFVRQLNTYGFRKVDPDR+EFANEGFLRGQKHLLK+I+RRKP   + Q QQP+L  
Sbjct: 84  SNFSSFVRQLNTYGFRKVDPDRWEFANEGFLRGQKHLLKTINRRKPTHGNNQVQQPQLPA 143

Query: 120 SSVGACVEVGKYGLEEEVEILKRDKNVLMQELVRLRQQQQATDRQLHTVGQRVQVMEQRQ 179
           + V ACVEVGK+G+EEE+E+LKRDKNVLMQELVRLRQQQQ TD QL T+G+R+Q MEQRQ
Sbjct: 144 APVPACVEVGKFGMEEEIEMLKRDKNVLMQELVRLRQQQQTTDHQLQTLGKRLQGMEQRQ 203

Query: 180 QQMMSFLAKAMHSPSFLSQLVQQQNDSNRHISGSNKKRRLPRQDEENTVGAYDSSIP--N 237
           QQMMSFLAKAMHSP FL+Q VQQ  +S R I  SNKKRRLP+QD     G+ DS     +
Sbjct: 204 QQMMSFLAKAMHSPGFLAQFVQQNENSRRRIVASNKKRRLPKQD-----GSLDSESASLD 258

Query: 238 GQIVKFQPSMNEAAKAMLHQIMKMNSPSRLEPTMSNLSTFLIDN-IPSANALENGHSSSQ 296
           GQIVK+QP +NEAAKAML +I+K++S  R E +M N   FL++N +P+   L++  SS++
Sbjct: 259 GQIVKYQPMINEAAKAMLRKILKLDSSHRFE-SMGNSDNFLLENYMPNGQGLDS-SSSTR 316

Query: 297 ISGVTLSEVPPNSGQSNMSTESRF-HVPSSAISEIQCSPCVSD--------SVKVNPTQE 347
            SGVTL+EVP NSG   ++T S    + S++  +IQC P V D        ++   P+  
Sbjct: 317 NSGVTLAEVPANSGLPYVATSSGLSAICSTSTPQIQC-PVVLDNGIPKEVPNMSAVPSVP 375

Query: 348 KSKHNSGNDTVLPNFPQLQGIASESTISIPDVNF 381
           K+      D  +  FP LQ I +E  + IP   F
Sbjct: 376 KAVAPGPTDINILEFPDLQDIVAEENVDIPGGGF 409

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359474544|ref|XP_003631489.1| PREDICTED: heat shock factor protein HSF8-like [Vitis vinifera]

 Score =  422 bits (1085), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 229/380 (60%), Positives = 275/380 (72%), Gaps = 15/380 (3%)

Query: 8   NGNSLPPFLSKIYDMVEDPSTNDIVSWSSSNNSFIVWKVAEFSRDLLPKYFKHSNFSSFV 67
           N N+ PPFLSK YDMV+DP+TN IVSWS +NNSF+VW   EF+RDLLPKYFKH+NFSSFV
Sbjct: 28  NSNAPPPFLSKTYDMVDDPATNSIVSWSPTNNSFVVWNPPEFARDLLPKYFKHNNFSSFV 87

Query: 68  RQLNTYGFRKVDPDRYEFANEGFLRGQKHLLKSISRRKPAQVHGQQQPKL---QNSSVGA 124
           RQLNTYGFRKVDPDR+EFANEGFLRGQKHLL+SI+RRKPA  H  QQP+    Q SSVGA
Sbjct: 88  RQLNTYGFRKVDPDRWEFANEGFLRGQKHLLRSINRRKPAHGHNLQQPQQSHSQGSSVGA 147

Query: 125 CVEVGKYGLEEEVEILKRDKNVLMQELVRLRQQQQATDRQLHTVGQRVQVMEQRQQQMMS 184
           CVEVGK+GLEEEVE LKRDKNVLMQELVRLRQQQQ TD QL T+ QR+Q MEQRQQQMMS
Sbjct: 148 CVEVGKFGLEEEVERLKRDKNVLMQELVRLRQQQQTTDNQLQTMVQRLQGMEQRQQQMMS 207

Query: 185 FLAKAMHSPSFLSQLVQQQNDSNRHISGSNKKRRLPRQDEENTVGAYDSSIPNGQIVKFQ 244
           FLAKA+ SP FL+Q VQQQN+SNR I+ +NKKRRL R+D     G + ++  +GQIVK+Q
Sbjct: 208 FLAKAVQSPGFLAQFVQQQNESNRRITEANKKRRLKRED--TAEGEHSAAPSDGQIVKYQ 265

Query: 245 PSMNEAAKAMLHQIMKMNSPSRLEPTMSNLS-TFLIDNI-PSANALENGHSSSQISGVTL 302
           P MNEA KAML Q++KM++ +      SN S  FLI ++  S+N +E G SS+ +SGVTL
Sbjct: 266 PLMNEATKAMLRQMVKMDTSA-----FSNDSDNFLIGDVSSSSNGVEKGGSSTCVSGVTL 320

Query: 303 SEVPPNSGQSNMSTESRFHVPSSAISEIQCSPCVSDSVKVNPTQEKSKHNSGNDTVLPNF 362
            EVPP S        S    PS+ ISEIQ  P +   V        S   +  D +LP  
Sbjct: 321 QEVPPTSLPVASGVPSH-DPPSAPISEIQSPPDICALVGAQEAVPISI--ALPDVILPEL 377

Query: 363 PQLQGIASESTISIPDVNFV 382
            Q+  +  +S + I   ++V
Sbjct: 378 SQIPEMLPKSIVDIHKDDYV 397

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147767343|emb|CAN71266.1| hypothetical protein VITISV_017888 [Vitis vinifera]

 Score =  421 bits (1083), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 229/380 (60%), Positives = 275/380 (72%), Gaps = 15/380 (3%)

Query: 8   NGNSLPPFLSKIYDMVEDPSTNDIVSWSSSNNSFIVWKVAEFSRDLLPKYFKHSNFSSFV 67
           N N+ PPFLSK YDMV+DP+TN IVSWS +NNSF+VW   EF+RDLLPKYFKH+NFSSFV
Sbjct: 27  NSNAPPPFLSKTYDMVDDPATNSIVSWSPTNNSFVVWNPPEFARDLLPKYFKHNNFSSFV 86

Query: 68  RQLNTYGFRKVDPDRYEFANEGFLRGQKHLLKSISRRKPAQVHGQQQPKL---QNSSVGA 124
           RQLNTYGFRKVDPDR+EFANEGFLRGQKHLL+SI+RRKPA  H  QQP+    Q SSVGA
Sbjct: 87  RQLNTYGFRKVDPDRWEFANEGFLRGQKHLLRSINRRKPAHGHNLQQPQQSHSQGSSVGA 146

Query: 125 CVEVGKYGLEEEVEILKRDKNVLMQELVRLRQQQQATDRQLHTVGQRVQVMEQRQQQMMS 184
           CVEVGK+GLEEEVE LKRDKNVLMQELVRLRQQQQ TD QL T+ QR+Q MEQRQQQMMS
Sbjct: 147 CVEVGKFGLEEEVERLKRDKNVLMQELVRLRQQQQTTDNQLQTMVQRLQGMEQRQQQMMS 206

Query: 185 FLAKAMHSPSFLSQLVQQQNDSNRHISGSNKKRRLPRQDEENTVGAYDSSIPNGQIVKFQ 244
           FLAKA+ SP FL+Q VQQQN+SNR I+ +NKKRRL R+D     G + ++  +GQIVK+Q
Sbjct: 207 FLAKAVQSPGFLAQFVQQQNESNRRITEANKKRRLKREDIAE--GEHSAAPSDGQIVKYQ 264

Query: 245 PSMNEAAKAMLHQIMKMNSPSRLEPTMSNLS-TFLIDNI-PSANALENGHSSSQISGVTL 302
           P MNEA KAML Q++KM++ +      SN S  FLI ++  S+N +E G SS+ +SGVTL
Sbjct: 265 PLMNEATKAMLRQMVKMDTSA-----FSNDSDNFLIGDVSSSSNGVEKGGSSTCVSGVTL 319

Query: 303 SEVPPNSGQSNMSTESRFHVPSSAISEIQCSPCVSDSVKVNPTQEKSKHNSGNDTVLPNF 362
            EVPP S        S    PS+ ISEIQ  P +   V        S   +  D +LP  
Sbjct: 320 QEVPPTSLPVASGVPSH-DPPSAPISEIQSPPDICALVGAQEAVPISI--ALPDVILPEL 376

Query: 363 PQLQGIASESTISIPDVNFV 382
            Q+  +  +S + I   ++V
Sbjct: 377 SQIPEMLPKSIVDIHKDDYV 396

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|115521209|gb|ABJ09070.1| heat shock transcription factor 1 [Medicago sativa]

 Score =  419 bits (1078), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 237/395 (60%), Positives = 286/395 (72%), Gaps = 17/395 (4%)

Query: 8   NGNSLPPFLSKIYDMVEDPSTNDIVSWSSSNNSFIVWKVAEFSRDLLPKYFKHSNFSSFV 67
           N N+ PPFLSK YDMV+DPST+ IVSWS++NNSF+VW   EF+RDLLPK+FKH+NFSSFV
Sbjct: 26  NANAPPPFLSKTYDMVDDPSTDAIVSWSATNNSFVVWDPPEFARDLLPKFFKHNNFSSFV 85

Query: 68  RQLNTYGFRKVDPDRYEFANEGFLRGQKHLLKSISRRKPAQVHG---QQQPKLQNSSVGA 124
           RQLNTYGFRKVDPDR+EFANEGFLRGQK LLKSISRRKPA  H     QQP  Q+SSVGA
Sbjct: 86  RQLNTYGFRKVDPDRWEFANEGFLRGQKQLLKSISRRKPAHGHTQQQAQQPHGQSSSVGA 145

Query: 125 CVEVGKYGLEEEVEILKRDKNVLMQELVRLRQQQQATDRQLHTVGQRVQVMEQRQQQMMS 184
           CVEVGK+GLEEEVE LKRDKNVLMQELVRLRQQQQ TD QL T+ QR+Q MEQRQQQMMS
Sbjct: 146 CVEVGKFGLEEEVERLKRDKNVLMQELVRLRQQQQTTDGQLQTMVQRLQGMEQRQQQMMS 205

Query: 185 FLAKAMHSPSFLSQLVQQQNDSNRHISGSNKKRRLPRQD--EENTVGAYDSSIPNGQIVK 242
           FLAKA+ SP F +Q VQQQNDSNR I+  NKKRRL +QD   E T  A   + P+GQIVK
Sbjct: 206 FLAKAVQSPGFFAQFVQQQNDSNRRITEVNKKRRL-KQDGIAETTEQA---TPPDGQIVK 261

Query: 243 FQPSMNEAAKAMLHQIMKMNSPSRLEPTMSNLSTFLI-DNIPSANALENGHSSSQISGVT 301
           +QP MNE AKAML +IMK ++P R+E    N   +LI D    ++A+++  S+S  SGVT
Sbjct: 262 YQPMMNETAKAMLRKIMKWDTP-RVESFNKNPDNYLIGDGTSPSSAMDSSSSTSWNSGVT 320

Query: 302 LSEVPPNSGQSN---MSTESRFHVPSSAISEIQCSPCVSDSVKV--NPTQEKSK-HNSGN 355
           L EVPP+S QS    MST ++ H+PS+   EI   P  + S  V  + T   S    S  
Sbjct: 321 LQEVPPSSVQSTQIPMSTGTQGHIPSAEKPEILSVPQAAASANVMKDGTHAASTIPTSQA 380

Query: 356 DTVLPNFPQLQGIASESTISIPDVNFVLKFGSNSF 390
           D ++P+ P +  I  +S + IP+ N++     + F
Sbjct: 381 DVIMPDIPSVPEIVPKSILDIPEDNYMAPETDDGF 415

Source: Medicago sativa

Species: Medicago sativa

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	398
TAIR|locus:2149050	481	HSF3 "AT5G16820" [Arabidopsis	0.884	0.731	0.561	2.2e-98
TAIR|locus:2075447	468	HSFA1E "AT3G02990" [Arabidopsi	0.886	0.754	0.551	2.6e-95
TAIR|locus:2028326	485	HSFA1D "AT1G32330" [Arabidopsi	0.846	0.694	0.565	1.2e-88
TAIR|locus:2005495	495	HSF1 "AT4G17750" [Arabidopsis	0.859	0.690	0.503	4.2e-79
TAIR|locus:2094339	406	HSFA6B "AT3G22830" [Arabidopsi	0.557	0.546	0.553	2.5e-58
TAIR|locus:2057371	345	HSFA2 "AT2G26150" [Arabidopsis	0.680	0.785	0.423	3e-53
TAIR|locus:2200171	374	HSFA8 "AT1G67970" [Arabidopsis	0.552	0.588	0.458	1e-45
TAIR|locus:2144603	412	HSFA3 "AT5G03720" [Arabidopsis	0.567	0.548	0.415	1.2e-45
TAIR|locus:2129276	466	AT-HSFA5 "AT4G13980" [Arabidop	0.648	0.553	0.393	3.1e-44
TAIR|locus:2117139	401	HSF A4A "AT4G18880" [Arabidops	0.781	0.775	0.335	8.1e-44

TAIR|locus:2149050 HSF3 "AT5G16820" [Arabidopsis thaliana (taxid:3702)]

 Score = 977 (349.0 bits), Expect = 2.2e-98, P = 2.2e-98
 Identities = 205/365 (56%), Positives = 262/365 (71%)

Query:    10 NSLPPFLSKIYDMVEDPSTNDIVSWSSSNNSFIVWKVAEFSRDLLPKYFKHSNFSSFVRQ 69
             NS+PPFLSK YDMV+DP TN++VSWSS NNSF+VW   EFS+ LLPKYFKH+NFSSFVRQ
Sbjct:    23 NSVPPFLSKTYDMVDDPLTNEVVSWSSGNNSFVVWSAPEFSKVLLPKYFKHNNFSSFVRQ 82

Query:    70 LNTYGFRKVDPDRYEFANEGFLRGQKHLLKSISRRKPAQVH-GQQQPKLQNSSVGACVEV 128
             LNTYGFRKVDPDR+EFANEGFLRG+K LLKSI RRKP+ V   QQQ ++Q+SSVGACVEV
Sbjct:    83 LNTYGFRKVDPDRWEFANEGFLRGRKQLLKSIVRRKPSHVQQNQQQTQVQSSSVGACVEV 142

Query:   129 GKYGLEEEVEILKRDKNVLMQELVRLRQQQQATDRQLHTVGXXXXXXXXXXXXXXSFLAK 188
             GK+G+EEEVE LKRDKNVLMQELVRLRQQQQAT+ QL  VG              SFLAK
Sbjct:   143 GKFGIEEEVERLKRDKNVLMQELVRLRQQQQATENQLQNVGQKVQVMEQRQQQMMSFLAK 202

Query:   189 AMHSPSFLSQLVQQQN-DSNRHISGSNKKRRLPRQDEENTVGAYDSSIPNGQIVKFQPSM 247
             A+ SP FL+QLVQQ N D NR I GSNKKRRLP  ++EN      + + N QIV++QPS+
Sbjct:   203 AVQSPGFLNQLVQQNNNDGNRQIPGSNKKRRLPVDEQENRGDNVANGL-NRQIVRYQPSI 261

Query:   248 NEAAKAMLHQIMKMNSPSRLEPTMSNLSTFLIDNIPSANALENGHSSSQISGVTLSEVPP 307
             NEAA+ ML Q +  ++  R E   +N  +FL+ ++PS+ +++NG+ SS++SGVTL+E  P
Sbjct:   262 NEAAQNMLRQFLNTSTSPRYESVSNNPDSFLLGDVPSSTSVDNGNPSSRVSGVTLAEFSP 321

Query:   308 NSGQSNMSTESRFHVPSSAISEIQCSPCVSDSVKVNPTQEKSKHNSGNDTVLPNFPQLQG 367
             N+ QS  +T     VP ++++    +  V  ++  +P Q  +  +S +    P F  L G
Sbjct:   322 NTVQS--ATNQ---VPEASLAHHPQAGLVQPNIGQSPAQGAAPADSWS----PEF-DLVG 371

Query:   368 IASES 372
               ++S
Sbjct:   372 CETDS 376

GO:0003677 "DNA binding" evidence=ISS;IDA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;IMP

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0009408 "response to heat" evidence=IEP;IMP;RCA

TAIR|locus:2075447 HSFA1E "AT3G02990" [Arabidopsis thaliana (taxid:3702)]

 Score = 948 (338.8 bits), Expect = 2.6e-95, P = 2.6e-95
 Identities = 198/359 (55%), Positives = 254/359 (70%)

Query:     2 SSSSAANGNSLPPFLSKIYDMVEDPSTNDIVSWSSSNNSFIVWKVAEFSRDLLPKYFKHS 61
             + SS A  +S+PPFLSK YDMV+DP T+D+VSWSS NNSF+VW V EF++  LPKYFKH+
Sbjct:    11 AKSSTAVMSSIPPFLSKTYDMVDDPLTDDVVSWSSGNNSFVVWNVPEFAKQFLPKYFKHN 70

Query:    62 NFSSFVRQLNTYGFRKVDPDRYEFANEGFLRGQKHLLKSISRRKPAQVHGQQQPKLQNSS 121
             NFSSFVRQLNTYGFRKVDPDR+EFANEGFLRGQK +LKSI RRKPAQV   QQP++Q+SS
Sbjct:    71 NFSSFVRQLNTYGFRKVDPDRWEFANEGFLRGQKQILKSIVRRKPAQVQPPQQPQVQHSS 130

Query:   122 VGACVEVGKYGLEEEVEILKRDKNVLMQELVRLRQQQQATDRQLHTVGXXXXXXXXXXXX 181
             VGACVEVGK+GLEEEVE L+RDKNVLMQELVRLRQQQQ T+  L  VG            
Sbjct:   131 VGACVEVGKFGLEEEVERLQRDKNVLMQELVRLRQQQQVTEHHLQNVGQKVHVMEQRQQQ 190

Query:   182 XXSFLAKAMHSPSFLSQLVQQQNDSNRHISGSNKKRRLPRQDEENTVGAYDSSIPNGQIV 241
               SFLAKA+ SP FL+Q  QQ N++N+HIS SNKKRRLP +D+ N+ G++  +  + QIV
Sbjct:   191 MMSFLAKAVQSPGFLNQFSQQSNEANQHISESNKKRRLPVEDQMNS-GSHGVNGLSRQIV 249

Query:   242 KFQPSMNEAAKAMLHQIMKM-NSPSRLEPTMSNLSTFLIDNIPSANALENGHSSSQISGV 300
             ++Q SMN+A   ML QI +M N+PS  E   SN  +FL+ ++P++N  +NG SS+    V
Sbjct:   250 RYQSSMNDATNTMLQQIQQMSNAPSH-ESLSSNNGSFLLGDVPNSNISDNGSSSNGSPEV 308

Query:   301 TLSEVPPNSGQSNMSTESRFHVPSSAISEIQCSPCVSDSVKVNPTQ-EKSKHNSGNDTV 358
             TL++V  +S  +      ++H P      ++ +   S    + PTQ   +  +S +D V
Sbjct:   309 TLADV--SSIPAGFYPAMKYHEPCETNQVMETNLPFSQGDLLPPTQGAAASGSSSSDLV 365

GO:0003677 "DNA binding" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0009408 "response to heat" evidence=RCA

GO:0010162 "seed dormancy process" evidence=RCA

TAIR|locus:2028326 HSFA1D "AT1G32330" [Arabidopsis thaliana (taxid:3702)]

 Score = 885 (316.6 bits), Expect = 1.2e-88, P = 1.2e-88
 Identities = 202/357 (56%), Positives = 241/357 (67%)

Query:     8 NGNSLPPFLSKIYDMVEDPSTNDIVSWSSSNNSFIVWKVAEFSRDLLPKYFKHSNFSSFV 67
             + N+ PPFLSK YDMV+D +T+ IVSWS++NNSFIVWK  EF+RDLLPK FKH+NFSSFV
Sbjct:    31 SSNAPPPFLSKTYDMVDDHNTDSIVSWSANNNSFIVWKPPEFARDLLPKNFKHNNFSSFV 90

Query:    68 RQLNTYGFRKVDPDRYEFANEGFLRGQKHLLKSISRRKPAQVHGQ-----QQPKLQNSSV 122
             RQLNTYGFRKVDPDR+EFANEGFLRGQKHLL+SI+RRKPA   GQ     Q    QNSSV
Sbjct:    91 RQLNTYGFRKVDPDRWEFANEGFLRGQKHLLQSITRRKPAHGQGQGHQRSQHSNGQNSSV 150

Query:   123 GACVEVGKYGLEEEVEILKRDKNVLMQELVRLRQQQQATDRQLHTVGXXXXXXXXXXXXX 182
              ACVEVGK+GLEEEVE LKRDKNVLMQELVRLRQQQQ+TD QL T+              
Sbjct:   151 SACVEVGKFGLEEEVERLKRDKNVLMQELVRLRQQQQSTDNQLQTMVQRLQGMENRQQQL 210

Query:   183 XSFLAKAMHSPSFLSQLVQQQN---DSNRHISGSNKKRRLPRQDEENTVGAYDSSIPNGQ 239
              SFLAKA+ SP FLSQ +QQQN   +SNR IS ++KKRR  R   +  V   DS+ P+GQ
Sbjct:   211 MSFLAKAVQSPHFLSQFLQQQNQQNESNRRISDTSKKRRFKR---DGIVRNNDSATPDGQ 267

Query:   240 IVKFQPSMNEAAKAMLHQIMKMNSPSRLEPTMSNLSTFLIDNIPSAN-ALENGHSSSQIS 298
             IVK+QP M+E AKAM  Q+MKM      EP  +    FL+ N  S     E   SS+Q+S
Sbjct:   268 IVKYQPPMHEQAKAMFKQLMKM------EPYKTGDDGFLLGNGTSTTEGTEMETSSNQVS 321

Query:   299 GVTLSEVPPNSG-QSNMSTESRFHVPSSAISEIQ-CSPCVSDSVKVNPTQEKSKHNS 353
             G+TL E+P  S  QS+   E+     S+A    + C P   D    + T    ++NS
Sbjct:   322 GITLKEMPTASEIQSSSPIETTPENVSAASEATENCIPSPDDLTLPDFTHMLPENNS 378

GO:0003677 "DNA binding" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0009408 "response to heat" evidence=IEP

GO:0009407 "toxin catabolic process" evidence=RCA

TAIR|locus:2005495 HSF1 "AT4G17750" [Arabidopsis thaliana (taxid:3702)]

 Score = 795 (284.9 bits), Expect = 4.2e-79, P = 4.2e-79
 Identities = 194/385 (50%), Positives = 235/385 (61%)

Query:     8 NGNSLPP-FLSKIYDMVEDPSTNDIVSWSSSNNSFIVWKVAEFSRDLLPKYFKHSNFSSF 66
             N NSLPP FLSK YDMVEDP+T+ IVSWS +NNSFIVW   EFSRDLLPKYFKH+NFSSF
Sbjct:    45 NANSLPPPFLSKTYDMVEDPATDAIVSWSPTNNSFIVWDPPEFSRDLLPKYFKHNNFSSF 104

Query:    67 VRQLNTYGFRKVDPDRYEFANEGFLRGQKHLLKSISRRKPAQVHGQQQ--PKLQNSSVG- 123
             VRQLNTYGFRKVDPDR+EFANEGFLRGQKHLLK ISRRK  Q HG     P+ Q  S G 
Sbjct:   105 VRQLNTYGFRKVDPDRWEFANEGFLRGQKHLLKKISRRKSVQGHGSSSSNPQSQQLSQGQ 164

Query:   124 -------ACVEVGKYGLEEEVEILKRDKNVLMQELVRLRQQQQATDRQLHTVGXXXXXXX 176
                    +CVEVGK+GLEEEVE LKRDKNVLMQELV+LRQQQQ TD +L  +        
Sbjct:   165 GSMAALSSCVEVGKFGLEEEVEQLKRDKNVLMQELVKLRQQQQTTDNKLQVLVKHLQVME 224

Query:   177 XXXXXXXSFLAKAMHSPSFLSQLVQQQNDSNRHISGSNKKRRLPRQDE----ENTVGAYD 232
                    SFLAKA+ +P+FLSQ +Q+Q DSN H++ +NKKRRL R+D     E+   ++ 
Sbjct:   225 QRQQQIMSFLAKAVQNPTFLSQFIQKQTDSNMHVTEANKKRRL-REDSTAATESNSHSHS 283

Query:   233 SSIPNGQIVKFQPSMNEAAKAMLHQIMKMNSPSRLEPTMSNLSTFLIDNIPSANALENGH 292
                 +GQIVK+QP  N++   M+  +MK +                 D  P    L+   
Sbjct:   284 LEASDGQIVKYQPLRNDS---MMWNMMKTD-----------------DKYPF---LDGFS 320

Query:   293 SSSQISGVTLSEVPP-NSGQSNMSTESRFHVPSSAISEIQCSPCVSDSVKVNPTQ-EKSK 350
             S +Q+SGVTL EV P  SGQS          P S +     S  + D++    +Q  +  
Sbjct:   321 SPNQVSGVTLQEVLPITSGQSQAYASVPSGQPLSYLPSTSTS--LPDTIMPETSQIPQLT 378

Query:   351 HNSGNDTVLPNFPQLQGIASESTIS 375
               S ND    NF   +    E+ IS
Sbjct:   379 RESINDFPTENFMDTEKNVPEAFIS 403

GO:0003677 "DNA binding" evidence=ISS;IDA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0009408 "response to heat" evidence=IEP;RCA

TAIR|locus:2094339 HSFA6B "AT3G22830" [Arabidopsis thaliana (taxid:3702)]

 Score = 599 (215.9 bits), Expect = 2.5e-58, P = 2.5e-58
 Identities = 125/226 (55%), Positives = 152/226 (67%)

Query:    13 PPFLSKIYDMVEDPSTNDIVSWSSSNNSFIVWKVAEFSRDLLPKYFKHSNFSSFVRQLNT 72
             PPFL+K YD+VED  TN +VSWS SNNSFIVW    FS  LLP++FKH+NFSSFVRQLNT
Sbjct:    60 PPFLTKTYDLVEDSRTNHVVSWSKSNNSFIVWDPQAFSVTLLPRFFKHNNFSSFVRQLNT 119

Query:    73 YGFRKVDPDRYEFANEGFLRGQKHLLKSISRRKPAQVHGQ-QQPKL--QNSSVGACVEVG 129
             YGFRKV+PDR+EFANEGFLRGQKHLLK+I RRK +    Q QQP+   Q S    C+EVG
Sbjct:   120 YGFRKVNPDRWEFANEGFLRGQKHLLKNIRRRKTSNNSNQMQQPQSSEQQSLDNFCIEVG 179

Query:   130 KYGLEEEVEILKRDKNVLMQELVRLRQQQQATDRQLHTVGXXXXXXXXXXXXXXSFLAKA 189
             +YGL+ E++ L+RDK VLM ELVRLRQQQQ+T   L  +               SFLA+A
Sbjct:   180 RYGLDGEMDSLRRDKQVLMMELVRLRQQQQSTKMYLTLIEEKLKKTESKQKQMMSFLARA 239

Query:   190 MHSPSFLSQLVQQQNDSNRHISGSNKKRRLPRQDEENTVGAY-DSS 234
             M +P F+ QLV+Q+          +KKR+ P    +  V  Y D S
Sbjct:   240 MQNPDFIQQLVEQKEKRKEIEEAISKKRQRPIDQGKRNVEDYGDES 285

GO:0003677 "DNA binding" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0009407 "toxin catabolic process" evidence=RCA

TAIR|locus:2057371 HSFA2 "AT2G26150" [Arabidopsis thaliana (taxid:3702)]

 Score = 551 (199.0 bits), Expect = 3.0e-53, P = 3.0e-53
 Identities = 119/281 (42%), Positives = 172/281 (61%)

Query:     8 NGNSLPPFLSKIYDMVEDPSTNDIVSWSSSNNSFIVWKVAEFSRDLLPKYFKHSNFSSFV 67
             N    PPFL+K Y+MVEDP+T+ +VSWS+  NSF+VW   +FS  LLP+YFKHSNFSSF+
Sbjct:    38 NETGPPPFLTKTYEMVEDPATDTVVSWSNGRNSFVVWDSHKFSTTLLPRYFKHSNFSSFI 97

Query:    68 RQLNTYGFRKVDPDRYEFANEGFLRGQKHLLKSISRRKPAQVHGQQQPKLQNSSVGACVE 127
             RQLNTYGFRK+DPDR+EFANEGFL GQKHLLK+I RR+     G Q    Q S + +CVE
Sbjct:    98 RQLNTYGFRKIDPDRWEFANEGFLAGQKHLLKNIKRRRNM---GLQNVNQQGSGM-SCVE 153

Query:   128 VGKYGLEEEVEILKRDKNVLMQELVRLRQQQQATDRQLHTVGXXXXXXXXXXXXXXSFLA 187
             VG+YG + EVE LKRD  VL+ E+VRLRQQQ ++  Q+  +               +FLA
Sbjct:   154 VGQYGFDGEVERLKRDHGVLVAEVVRLRQQQHSSKSQVAAMEQRLLVTEKRQQQMMTFLA 213

Query:   188 KAMHSPSFLSQLVQQQNDSNRHISGSN--KKRRLPRQDEENTVGAYDSSIPNGQIVKFQP 245
             KA+++P+F+ Q      +  + + G +  +KRRL       T+   ++ + + +  + + 
Sbjct:   214 KALNNPNFVQQFAVMSKEK-KSLFGLDVGRKRRLTSTPSLGTME--ENLLHDQEFDRMKD 270

Query:   246 SMNEAAKAMLHQIMKMNSPSRLEPTMSNLSTFLID-NIPSA 285
              M     A +      + P++ E  +  ++  + D N+ +A
Sbjct:   271 DMEMLFAAAIDDEANNSMPTKEEQCLEAMNVMMRDGNLEAA 311

GO:0003677 "DNA binding" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0009408 "response to heat" evidence=IEP;RCA

GO:0009644 "response to high light intensity" evidence=IEP;RCA

GO:0042542 "response to hydrogen peroxide" evidence=IEP;RCA

GO:0010200 "response to chitin" evidence=IEP

GO:0034620 "cellular response to unfolded protein" evidence=IEP;IMP

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IDA

GO:0001666 "response to hypoxia" evidence=IMP

GO:0034605 "cellular response to heat" evidence=IEP

GO:0005515 "protein binding" evidence=IPI

GO:0010286 "heat acclimation" evidence=RCA;IMP

GO:0071456 "cellular response to hypoxia" evidence=IEP

GO:0006457 "protein folding" evidence=RCA

GO:0009407 "toxin catabolic process" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

TAIR|locus:2200171 HSFA8 "AT1G67970" [Arabidopsis thaliana (taxid:3702)]

 Score = 480 (174.0 bits), Expect = 1.0e-45, P = 1.0e-45
 Identities = 104/227 (45%), Positives = 144/227 (63%)

Query:     6 AANGNSLPPFLSKIYDMVEDPSTNDIVSWS-SSNNSFIVWKVAEFSRDLLPKYFKHSNFS 64
             +++ +S+ PFL K YDMV+D +T+ I+SWS S++NSF++     FS  LLPKYFKHSNFS
Sbjct:    11 SSSSSSVAPFLRKCYDMVDDSTTDSIISWSPSADNSFVILDTTVFSVQLLPKYFKHSNFS 70

Query:    65 SFVRQLNTYGFRKVDPDRYEFANEGFLRGQKHLLKSISRRKPAQVHGQQQPKLQNSSVGA 124
             SF+RQLN YGFRKVD DR+EFAN+GF+RGQK LLK++ RRK   V   +Q K +++S   
Sbjct:    71 SFIRQLNIYGFRKVDADRWEFANDGFVRGQKDLLKNVIRRK--NVQSSEQSKHESTSTTY 128

Query:   125 CVEVGKYGLEEEVEILKRDKNVLMQELVRLRQQQQATDRQLHTVGXXXXXXXXXXXXXXS 184
               E  K GL +EV+ILK DK VL QEL+++RQ Q+ TD ++  +               S
Sbjct:   129 AQE--KSGLWKEVDILKGDKQVLAQELIKVRQYQEVTDTKMLHLEDRVQGMEESQQEMLS 186

Query:   185 FLAKAMHSPSFLSQLVQQQNDSNRHISGSNKK--RRLPRQDEENTVG 229
             FL   M +PS L QL+Q +  +    +G   K    +  + E N+ G
Sbjct:   187 FLVMVMKNPSLLVQLLQPKEKNTWRKAGEGAKIVEEVTDEGESNSYG 233

GO:0003677 "DNA binding" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

TAIR|locus:2144603 HSFA3 "AT5G03720" [Arabidopsis thaliana (taxid:3702)]

 Score = 454 (164.9 bits), Expect = 1.2e-45, Sum P(2) = 1.2e-45
 Identities = 98/236 (41%), Positives = 141/236 (59%)

Query:     9 GNSLPPFLSKIYDMVEDPSTNDIVSWSSSNNSFIVWKVAEFSRDLLPKYFKHSNFSSFVR 68
             GN +PPFLSK +D+V+DP+ + ++SW  +  SF+VW   EF+R +LP+ FKH+NFSSFVR
Sbjct:    50 GNPIPPFLSKTFDLVDDPTLDPVISWGLTGASFVVWDPLEFARIILPRNFKHNNFSSFVR 109

Query:    69 QLNTYGFRKVDPDRYEFANEGFLRGQKHLLKSISRRKPAQVHGQQQPKLQNSSVGACVEV 128
             QLNTYGFRK+D D++EFANE FLRG+KHLLK+I RR+  Q + Q      + S G+  EV
Sbjct:   110 QLNTYGFRKIDTDKWEFANEAFLRGKKHLLKNIHRRRSPQSN-QTCCSSTSQSQGSPTEV 168

Query:   129 GKYGLEEEVEILKRDKNVLMQELVRLRQQQQATDRQLHTVGXXXXXXXXXXXXXXSFLAK 188
             G  G   E+E L++++  LM+E+V L+QQ + T R + TV               SFLAK
Sbjct:   169 G--G---EIEKLRKERRALMEEMVELQQQSRGTARHVDTVNQRLKAAEQRQKQLLSFLAK 223

Query:   189 AMHSPSFLSQLVQQQNDSNRHISGSNKKRRLPRQDEENTVGAYDSSIPNGQIVKFQ 244
                +  FL +L   +        G  K R+   +  +        S   G++VK++
Sbjct:   224 LFQNRGFLERLKNFKGKEKGGALGLEKARKKFIKHHQQP----QDSPTGGEVVKYE 275

GO:0003677 "DNA binding" evidence=ISS;IDA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;IDA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0010200 "response to chitin" evidence=IEP

GO:0009408 "response to heat" evidence=IEP;RCA

TAIR|locus:2129276 AT-HSFA5 "AT4G13980" [Arabidopsis thaliana (taxid:3702)]

 Score = 466 (169.1 bits), Expect = 3.1e-44, P = 3.1e-44
 Identities = 109/277 (39%), Positives = 158/277 (57%)

Query:     2 SSSSAANGNSL--P-PFLSKIYDMVEDPSTNDIVSWSSSNNSFIVWKVAEFSRDLLPKYF 58
             SS+S + G     P PFL K Y+MV+D ST+ IVSWS++NNSFIVW  AEFSR LLP YF
Sbjct:     8 SSASVSGGEGAGGPAPFLVKTYEMVDDSSTDQIVSWSANNNSFIVWNHAEFSRLLLPTYF 67

Query:    59 KHSNFSSFVRQLNTYGFRKVDPDRYEFANEGFLRGQKHLLKSISRRKPAQVHGQQQPKLQ 118
             KH+NFSSF+RQLNTYGFRK+DP+R+EF N+ F++ QKHLLK+I RRKP  +H    P   
Sbjct:    68 KHNNFSSFIRQLNTYGFRKIDPERWEFLNDDFIKDQKHLLKNIHRRKP--IHSHSHPPAS 125

Query:   119 NSSVGACVEVGKYGLEEEVEILKRDKNVLMQELVRLRQQQQATDRQLHTVGXXXXXXXXX 178
             ++     V      L+E+++ L R+K  +  +L++ +QQ+     Q   +          
Sbjct:   126 STDQERAV------LQEQMDKLSREKAAIEAKLLKFKQQKVVAKHQFEEMTEHVDDMENR 179

Query:   179 XXXXXSFLAKAMHSPSFLSQLVQQQNDSNRHISGSNKKRRLPRQDEENTVGAYDSSIPNG 238
                  +FL  A+ +P+F+    ++    +  IS  NKKRRLP + E++   + DS + N 
Sbjct:   180 QKKLLNFLETAIRNPTFVKNFGKKVEQLD--ISAYNKKRRLP-EVEQSKPPSEDSHLDNS 236

Query:   239 QIVKFQPSMNEAAKAMLHQIMKMNSPSRLEPTMSNLS 275
                    S  E+   + HQ         L P  S+++
Sbjct:   237 S----GSSRRESGN-IFHQNFSNKLRLELSPADSDMN 268

GO:0003677 "DNA binding" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0000956 "nuclear-transcribed mRNA catabolic process" evidence=RCA

TAIR|locus:2117139 HSF A4A "AT4G18880" [Arabidopsis thaliana (taxid:3702)]

 Score = 462 (167.7 bits), Expect = 8.1e-44, P = 8.1e-44
 Identities = 113/337 (33%), Positives = 186/337 (55%)

Query:     3 SSSAANGNSLPPFLSKIYDMVEDPSTNDIVSWSSSNNSFIVWKVAEFSRDLLPKYFKHSN 62
             ++   + +SLPPFL+K Y+MV+D S++ IVSWS SN SFIVW   EFSRDLLP++FKH+N
Sbjct:     4 NNHGVSSSSLPPFLTKTYEMVDDSSSDSIVSWSQSNKSFIVWNPPEFSRDLLPRFFKHNN 63

Query:    63 FSSFVRQLNTYGFRKVDPDRYEFANEGFLRGQKHLLKSISRRKPAQVHGQQQPKLQNSSV 122
             FSSF+RQLNTYGFRK DP+++EFAN+ F+RGQ HL+K+I RRKP  VH    P LQ + +
Sbjct:    64 FSSFIRQLNTYGFRKADPEQWEFANDDFVRGQPHLMKNIHRRKP--VHSHSLPNLQ-AQL 120

Query:   123 GACVEVGKYGLEEEVEILKRDKNVLMQELVRLRQQQQATDRQLHTVGXXXXXXXXXXXXX 182
                 +  +  +  ++E L ++K  L++EL +  ++++  + Q+  +              
Sbjct:   121 NPLTDSERVRMNNQIERLTKEKEGLLEELHKQDEEREVFEMQVKELKERLQHMEKRQKTM 180

Query:   183 XSFLAKAMHSPSFLSQLVQQQNDSNRHISGSNKKRRLPRQD---EENTVGAYDSSIPNGQ 239
              SF+++ +  P     L     ++N       +KRR PR +   +E  +    + +    
Sbjct:   181 VSFVSQVLEKPGLALNLSPCVPETNE------RKRRFPRIEFFPDEPMLEENKTCV---- 230

Query:   240 IVKFQPSMNEAAKAMLHQIMKMNSPSRL-EPTMSNLSTFLIDNIPSANALENGHSSSQIS 298
             +V+ + S + ++    HQ+ ++ S   + E  +S+    ++ +  S   L+   SS    
Sbjct:   231 VVREEGSTSPSSHTREHQVEQLESSIAIWENLVSDSCESMLQS-RSMMTLDVDESS---- 285

Query:   299 GVTLSEVPPNSG-QSNMSTESRFHVPSSAISEIQCSP 334
               T  E PP S  Q ++ +  +   PS  I ++ C P
Sbjct:   286 --TFPESPPLSCIQLSVDSRLK-SPPSPRIIDMNCEP 319

GO:0003677 "DNA binding" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0010200 "response to chitin" evidence=IEP;RCA

GO:0002679 "respiratory burst involved in defense response" evidence=RCA

GO:0009408 "response to heat" evidence=RCA

GO:0035556 "intracellular signal transduction" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q84T61	HSFA1_ORYSJ	No assigned EC number	0.5710	0.9321	0.7332	yes	no
O81821	HFA1B_ARATH	No assigned EC number	0.6040	0.8492	0.7027	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	398
pfam00447	96	pfam00447, HSF_DNA-bind, HSF-type DNA-binding	3e-50
smart00415	105	smart00415, HSF, heat shock factor	5e-48
COG5169	282	COG5169, HSF1, Heat shock transcription factor [Tr	1e-24

>gnl|CDD|215924 pfam00447, HSF_DNA-bind, HSF-type DNA-binding

 Score =  163 bits (416), Expect = 3e-50
 Identities = 59/95 (62%), Positives = 72/95 (75%), Gaps = 2/95 (2%)

Query: 14  PFLSKIYDMVEDPSTNDIVSWSSSNNSFIVWKVAEFSRDLLPKYFKHSNFSSFVRQLNTY 73
           PFL K+Y+++EDPS +DI+SWS   NSFI+W   EF++ +LPKYFKH+NFSSFVRQLN Y
Sbjct: 1   PFLHKLYEILEDPSYDDIISWSEDGNSFIIWDPEEFAKQVLPKYFKHNNFSSFVRQLNMY 60

Query: 74  GFRKVDPDR--YEFANEGFLRGQKHLLKSISRRKP 106
           GF KV  DR  +EFA+  F RGQK LL  I RRK 
Sbjct: 61  GFHKVKDDRNGWEFAHPNFKRGQKELLSKIKRRKS 95

Length = 96

>gnl|CDD|214654 smart00415, HSF, heat shock factor

 Score =  158 bits (402), Expect = 5e-48
 Identities = 60/105 (57%), Positives = 78/105 (74%), Gaps = 11/105 (10%)

Query: 11  SLPPFLSKIYDMVEDPSTNDIVSWSSSNNSFIVWKVAEFSRDLLPKYFKHSNFSSFVRQL 70
             PPFL+K+Y +VEDPST+ I+SWS S  SF++W   EF+++LLP+YFKH+NFSSFVRQL
Sbjct: 1   QPPPFLTKLYLLVEDPSTDKIISWSPSGKSFVIWDPEEFAKNLLPRYFKHNNFSSFVRQL 60

Query: 71  NTYGFRKVDP-----------DRYEFANEGFLRGQKHLLKSISRR 104
           N YGFRKVDP           D++EFAN  F+RGQ  LL++I R+
Sbjct: 61  NMYGFRKVDPEFQGILYNFTSDQWEFANPDFVRGQPELLRNIKRK 105

Length = 105

>gnl|CDD|227497 COG5169, HSF1, Heat shock transcription factor [Transcription]

 Score =  101 bits (254), Expect = 1e-24
 Identities = 44/120 (36%), Positives = 67/120 (55%), Gaps = 11/120 (9%)

Query: 3   SSSAANGNSLPPFLSKIYDMVEDPSTNDIVSWSSSNNSFIVWKVAEFSRDLLPKYFKHSN 62
            S ++  +    F+ K+Y ++E+P    ++ WS    SF++    EF++ +LP+YFKH N
Sbjct: 1   MSMSSRWSQPKEFVHKLYQILEEPEYYKLIQWSPDGRSFVILDPEEFTKVILPRYFKHGN 60

Query: 63  FSSFVRQLNTYGFRKV----------DPDRYEFANEGFLRGQKHLLKSISRRK-PAQVHG 111
           F+SFVRQLN YGF KV          + + +EF N+ F  G   LLK I R+K P+    
Sbjct: 61  FASFVRQLNKYGFHKVSHKSGQRSYYNENVWEFGNKNFQLGMIELLKKIKRKKAPSNRVD 120

Length = 282

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	398
KOG0627	304	consensus Heat shock transcription factor [Transcr	100.0
PF00447	103	HSF_DNA-bind: HSF-type DNA-binding; InterPro: IPR0	100.0
smart00415	105	HSF heat shock factor.	100.0
COG5169	282	HSF1 Heat shock transcription factor [Transcriptio	99.98
PF00178	85	Ets: Ets-domain; InterPro: IPR000418 Transcription	95.58
PF03310	121	Cauli_DNA-bind: Caulimovirus DNA-binding protein;	93.93
smart00413	87	ETS erythroblast transformation specific domain. v	93.06
KOG3806	177	consensus Predicted transcription factor [Transcri	89.38
TIGR02894	161	DNA_bind_RsfA transcription factor, RsfA family. I	85.77
PF12325	120	TMF_TATA_bd: TATA element modulatory factor 1 TATA	85.26
COG3074	79	Uncharacterized protein conserved in bacteria [Fun	85.24
PF11932	251	DUF3450: Protein of unknown function (DUF3450); In	84.77
PF04340	225	DUF484: Protein of unknown function, DUF484; Inter	84.47
TIGR02449	65	conserved hypothetical protein TIGR02449. Members	84.3
TIGR03752	472	conj_TIGR03752 integrating conjugative element pro	84.3
PF06005	72	DUF904: Protein of unknown function (DUF904); Inte	82.94
PF02183	45	HALZ: Homeobox associated leucine zipper; InterPro	82.84
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	80.94
PF06005	72	DUF904: Protein of unknown function (DUF904); Inte	80.86
PRK15422	79	septal ring assembly protein ZapB; Provisional	80.48

>KOG0627 consensus Heat shock transcription factor [Transcription]

Probab=100.00  E-value=1.1e-47  Score=376.31  Aligned_cols=198  Identities=50%  Similarity=0.813  Sum_probs=177.7

Q ss_pred             CCCCCCCCcHHHHHHHhccCCCCCCceEEcCCCCeEEEecccchhhhhcccccCCCChhhHhhhhcccCccccc--CCce
Q 015923            6 AANGNSLPPFLSKIYDMVEDPSTNDIVSWSSSNNSFIVWKVAEFSRDLLPKYFKHSNFSSFVRQLNTYGFRKVD--PDRY   83 (398)
Q Consensus         6 ~~~~~~~~~Fl~KLy~mled~~~~~iIsWs~~G~sFvI~d~~~F~~~vLP~yFkh~nfsSFvRQLN~YGFrKv~--~d~~   83 (398)
                      ......+++|+.|||+||+||+++++|+|+++|++|||||+.+|++.+||+||||+||+|||||||+||||||+  +++|
T Consensus         6 ~~~~~~~~~Fl~K~y~~v~Dps~~~iisWs~~g~sFvv~d~~~F~~~~Lp~~FKh~NfsSFvRQLN~YgFrKv~~~~~~w   85 (304)
T KOG0627|consen    6 LSEASGPPPFLEKLYEMVEDPSTDEIISWSPSGNSFVIWNPEEFAKVLLPLYFKHNNFSSFVRQLNMYGFRKVDFKSDRW   85 (304)
T ss_pred             ccccCCCCcHHHHHHHHhcCCCCCCceEECCCCCccccCCHHHHHHHHhHHhccccCccceeeeecccceeecCCCCCce
Confidence            34455899999999999999999999999999999999999999999999999999999999999999999999  9999


Q ss_pred             eEecCCcccccccccccceecCCCCccCCC--Cccc--ccCCCccchhccccChHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015923           84 EFANEGFLRGQKHLLKSISRRKPAQVHGQQ--QPKL--QNSSVGACVEVGKYGLEEEVEILKRDKNVLMQELVRLRQQQQ  159 (398)
Q Consensus        84 eF~h~~F~Rg~~~LL~~IkRrk~~~~~~~q--q~~~--~~ss~~~~~E~g~~~Le~Eve~LKrD~~~L~qEL~~LRQqqq  159 (398)
                      ||+|++|+||+++||++|+|||+.+.....  +...  .......+.+..+..++.++.+|+++++.|++|+++||+++.
T Consensus        86 EF~n~~F~rg~~~LL~~I~rrk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~lr~~~~  165 (304)
T KOG0627|consen   86 EFSNPCFVRGQKLLLKNIKRRKSASRIFQTKDSPKSFERQLNLYGFVKIRQLNLKESAKSLSKENEVLQRELVELRQQQD  165 (304)
T ss_pred             eecChhHhcChHHHHHHHhhhccccCCcccccCcchhhhhhhHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHhhHH
Confidence            999999999999999999999998775421  1111  111122345566778999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhHHHHHhhhc
Q 015923          160 ATDRQLHTVGQRVQVMEQRQQQMMSFLAKAMHSPSFLSQLVQQQ  203 (398)
Q Consensus       160 ~~e~qLq~L~~RLq~mE~rQqqmmsfLak~~q~P~fl~qlvq~~  203 (398)
                      .++++++.+.++|..++.+|++++.++++.++.|+|+.++.+..
T Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~  209 (304)
T KOG0627|consen  166 ALRATIQTSKRVVKSKETRNSLILSFLARDVQSPGFLNQAPQRQ  209 (304)
T ss_pred             HHHHHHHhhccccCchhhHHHHHhhHHHhhccCccchhcccchh
Confidence            99999999999999999999999999999999999999998763

>PF00447 HSF_DNA-bind: HSF-type DNA-binding; InterPro: IPR000232 Heat shock factor (HSF) is a transcriptional activator of heat shock genes []: it binds specifically to heat shock promoter elements, which are palindromic sequences rich with repetitive purine and pyrimidine motifs []

Probab=100.00  E-value=8e-35  Score=244.51  Aligned_cols=93  Identities=58%  Similarity=1.035  Sum_probs=81.6

Q ss_pred             cHHHHHHHhccCCCCCCceEEcCCCCeEEEecccchhhhhcccccCCCChhhHhhhhcccCcccccCC---------cee
Q 015923           14 PFLSKIYDMVEDPSTNDIVSWSSSNNSFIVWKVAEFSRDLLPKYFKHSNFSSFVRQLNTYGFRKVDPD---------RYE   84 (398)
Q Consensus        14 ~Fl~KLy~mled~~~~~iIsWs~~G~sFvI~d~~~F~~~vLP~yFkh~nfsSFvRQLN~YGFrKv~~d---------~~e   84 (398)
                      .||.|||+||+|++++++|+|+++|++|||+|+.+|++.|||+||+|+||+||+||||+|||+|+..+         .|+
T Consensus         1 ~F~~kL~~~l~~~~~~~~I~W~~~G~~fiI~d~~~f~~~vLp~~F~~~~~~SF~RQLn~yGF~k~~~~~~~~~~~~~~~~   80 (103)
T PF00447_consen    1 KFLSKLYEMLEDPENSDIIRWSPDGDSFIIHDPEEFEKEVLPKYFKHSNFSSFVRQLNMYGFKKVSSDSNQSSLSSNIWE   80 (103)
T ss_dssp             HHHHHHHHHHCTTTTTTTCEECTTSSEEEES-HHHHHHHTHHHHSST--HHHHHHHHHHTTEEECC-SSCTTSSTTTTEE
T ss_pred             ChHHHHHHHHcCCCCCCEEEEeCCCCEEEEeecHHHhhhccccccCccccceeeeEeeeeeeEEEecCccccccCCCCeE
Confidence            59999999999999999999999999999999999999999999999999999999999999999643         399


Q ss_pred             EecCCcccccccccccceecCC
Q 015923           85 FANEGFLRGQKHLLKSISRRKP  106 (398)
Q Consensus        85 F~h~~F~Rg~~~LL~~IkRrk~  106 (398)
                      |+|++|+||++++|..|+||++
T Consensus        81 f~h~~F~r~~~~lL~~I~r~~~  102 (103)
T PF00447_consen   81 FYHPNFRRGQPDLLSKIKRRKS  102 (103)
T ss_dssp             EEETT-BTTBCCCTTTS---TT
T ss_pred             ECCcCccCCCHHHHhhCccCCC
Confidence            9999999999999999999875

Under normal conditions, HSF is a homo-trimeric cytoplasmic protein, but heat shock activation results in relocalisation to the nucleus []. Each HSF monomer contains one C-terminal and three N-terminal leucine zipper repeats []. Point mutations in these regions result in disruption of cellular localisation, rendering the protein constitutively nuclear []. Two sequences flanking the N-terminal zippers fit the consensus of a bi- partite nuclear localisation signal (NLS). Interaction between the N- and C-terminal zippers may result in a structure that masks the NLS sequences: following activation of HSF, these may then be unmasked, resulting in relocalisation of the protein to the nucleus []. The DNA-binding component of HSF lies to the N terminus of the first NLS region, and is referred to as the HSF domain.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 1FBQ_B 1FYL_B 1FBS_A 1FYM_B 3HTS_B 2HTS_A 3HSF_A 1FBU_B 1FYK_A 2LDU_A ....

>smart00415 HSF heat shock factor

Probab=100.00  E-value=1.7e-34  Score=244.31  Aligned_cols=94  Identities=64%  Similarity=1.204  Sum_probs=90.8

Q ss_pred             CCCcHHHHHHHhccCCCCCCceEEcCCCCeEEEecccchhhhhcccccCCCChhhHhhhhcccCcccccC----------
Q 015923           11 SLPPFLSKIYDMVEDPSTNDIVSWSSSNNSFIVWKVAEFSRDLLPKYFKHSNFSSFVRQLNTYGFRKVDP----------   80 (398)
Q Consensus        11 ~~~~Fl~KLy~mled~~~~~iIsWs~~G~sFvI~d~~~F~~~vLP~yFkh~nfsSFvRQLN~YGFrKv~~----------   80 (398)
                      .+|.|+.|||+||+|+++++||+|+++|++|+|+|+..|.+.|||+||+|+||+||+||||+|||+|+..          
T Consensus         1 ~~~~F~~kL~~~l~~~~~~~iI~W~~~G~~f~I~d~~~f~~~vLp~~Fk~~~~~SF~RqLn~yGF~k~~~~~~~~~~~~~   80 (105)
T smart00415        1 QPPPFLTKLYLLVEDPSTDKIISWSPSGKSFVIWDPEEFAKNLLPRYFKHNNFSSFVRQLNMYGFRKVDPEFQGILYNFT   80 (105)
T ss_pred             CCCcHHHHHHHHHhCCCCCCEEEECCCCCEEEEcCHHHHHHHHHHHhcCCCCHHHHHHHHHhcCCEEeccccccccccCC
Confidence            3789999999999999999999999999999999999999999999999999999999999999999875          


Q ss_pred             -CceeEecCCcccccccccccceec
Q 015923           81 -DRYEFANEGFLRGQKHLLKSISRR  104 (398)
Q Consensus        81 -d~~eF~h~~F~Rg~~~LL~~IkRr  104 (398)
                       +.|+|+|++|+||+++||..|+||
T Consensus        81 ~~~~~F~h~~F~Rg~~~lL~~I~Rk  105 (105)
T smart00415       81 SDQWEFANPDFVRGQPELLRNIKRK  105 (105)
T ss_pred             CCceEEECcCccCcCHHHHHhCcCC
Confidence             789999999999999999999986

>COG5169 HSF1 Heat shock transcription factor [Transcription]

Probab=99.98  E-value=3.9e-33  Score=271.98  Aligned_cols=104  Identities=40%  Similarity=0.791  Sum_probs=95.6

Q ss_pred             CCCCCCCCcHHHHHHHhccCCCCCCceEEcCCCCeEEEecccchhhhhcccccCCCChhhHhhhhcccCccccc-C----
Q 015923            6 AANGNSLPPFLSKIYDMVEDPSTNDIVSWSSSNNSFIVWKVAEFSRDLLPKYFKHSNFSSFVRQLNTYGFRKVD-P----   80 (398)
Q Consensus         6 ~~~~~~~~~Fl~KLy~mled~~~~~iIsWs~~G~sFvI~d~~~F~~~vLP~yFkh~nfsSFvRQLN~YGFrKv~-~----   80 (398)
                      ++....++.|+.|||.||+||++.++|+|+++|++|||+|+..|.+.|||+||||+||+|||||||+||||||. .    
T Consensus         4 s~~~~~~~~FV~KLy~iLe~~e~~k~I~Ws~~G~sfvI~~~~~F~~~iLpr~FKh~NfaSFVRQLN~YgFhKv~h~~~~~   83 (282)
T COG5169           4 SSRWSQPKEFVHKLYQILEEPEYYKLIQWSPDGRSFVILDPEEFTKVILPRYFKHGNFASFVRQLNKYGFHKVSHKSGQR   83 (282)
T ss_pred             CcCCCchhHHHHHHHHHhcCcccCCceEECCCCCEEEEeCcchhhhhhhhhhhcccCHHHHHHHHHhcCcEeccCCcccc
Confidence            34556678999999999999999999999999999999999999999999999999999999999999999996 1    


Q ss_pred             -----CceeEecCCcccccccccccceecCCCCc
Q 015923           81 -----DRYEFANEGFLRGQKHLLKSISRRKPAQV  109 (398)
Q Consensus        81 -----d~~eF~h~~F~Rg~~~LL~~IkRrk~~~~  109 (398)
                           +.|||.|++|++|..++|++|+|+|....
T Consensus        84 ~~~n~~~wef~~~nF~~g~~~~L~~i~r~ka~~~  117 (282)
T COG5169          84 SYYNENVWEFGNKNFQLGMIELLKKIKRKKAPSN  117 (282)
T ss_pred             cccchhheeecCchhccCcHHHHHHhhhhhcCcc
Confidence                 24999999999999999999999765543

>PF00178 Ets: Ets-domain; InterPro: IPR000418 Transcription factors are protein molecules that bind to specific DNA sequences in the genome, resulting in the induction or inhibition of gene transcription []

Probab=95.58  E-value=0.0066  Score=50.33  Aligned_cols=59  Identities=24%  Similarity=0.420  Sum_probs=46.2

Q ss_pred             HHHHHHhccCCCCCCceEEcC-CCCeEEEecccchhhhhc-ccccCCCChhhHhhhhcccC
Q 015923           16 LSKIYDMVEDPSTNDIVSWSS-SNNSFIVWKVAEFSRDLL-PKYFKHSNFSSFVRQLNTYG   74 (398)
Q Consensus        16 l~KLy~mled~~~~~iIsWs~-~G~sFvI~d~~~F~~~vL-P~yFkh~nfsSFvRQLN~YG   74 (398)
                      ..=|.++|.|++..++|+|.. .+.-|.|.|+.++++.-- -+--..-+|.++-|-|..|.
T Consensus         5 w~FLl~LL~d~~~~~~I~Wt~~~~~eFki~d~~~vA~lWG~~k~~~~m~yeklsR~LR~yy   65 (85)
T PF00178_consen    5 WQFLLELLEDPSNSDIIAWTGKRGGEFKIVDPEAVARLWGKHKNRPNMNYEKLSRALRYYY   65 (85)
T ss_dssp             HHHHHHHHHSGGGTTTEEEEETSTTEEEESSHHHHHHHHHHHTTSTT-SHHHHHHHHHHHH
T ss_pred             HHHHHHHhcCccCCCeeEeeccCCCeEEecCHHHHHHHHHHHcCCccccHHHHHHHHHHHh
Confidence            345788999999999999999 999999999999987421 12233457999999998763

The ets oncogene is such a factor, possessing a region of 85-90 amino acids known as the ETS (erythroblast transformation specific) domain [, , ]. This domain is rich in positively-charged and aromatic residues, and binds to purine-rich segments of DNA. The ETS domain has been identified in other transcription factors such as PU.1, human erg, human elf-1, human elk-1, GA binding protein, and a number of others [, , ]. It is generally localized at the C terminus of the protein, with the exception of ELF-1, ELK-1, ELK-3, ELK-4 and ERF where it is found at the N terminus. NMR-analysis of the structure of the Ets domains revealed that it contains three alpha-helixes (1-3) and four-stranded beta-sheets (1-4) arranged in the order alpha1-beta1-beta2-alpha2-alpha3-beta3-beta4 forming a winged helix-turn-helix (wHTH) topology []. The third alpha-helix is responsive to contact to the major groove of the DNA. Different members of the Ets family proteins display distinct DNA binding specificities. The Ets domains and the flanking amino acid sequences of the proteins influence the binding affinity, and the alteration of a single amino acid in the Ets domain can change its DNA binding specificities. Avian leukemia virus E26 is a replication defective retrovirus that induces a mixed erythroid/myeloid leukemia in chickens.This virus carries two distinct oncogenes: v-myb and v-ets. The ets portion of this oncogene is required for the induction of erythroblastosis. V-ets and c-ets-1, its cellular progenitor, have been shown [] to be nuclear DNA-binding proteins. Ets-1 differs slightly from v-ets at its carboxy-terminal region. In most species where it has been sequenced, c-ets-1 exists in various isoforms generated by alternative splicing and differential phosphorylation.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1DUX_F 4AVP_B 1HBX_G 1BC7_C 1K6O_A 1BC8_C 1PUE_E 1FLI_A 2DAO_A 1WWX_A ....

>PF03310 Cauli_DNA-bind: Caulimovirus DNA-binding protein; InterPro: IPR004986 The gene III product (P15) of cauliflower mosaic virus (CaMV) is a DNA binding protein in which the DNA binding activity is located on its C-terminal part

Probab=93.93  E-value=0.1  Score=46.12  Aligned_cols=58  Identities=19%  Similarity=0.332  Sum_probs=48.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhHHHHHhhhccc
Q 015923          145 NVLMQELVRLRQQQQATDRQLHTVGQRVQVMEQRQQQMMSFLAKAMHSPSFLSQLVQQQND  205 (398)
Q Consensus       145 ~~L~qEL~~LRQqqq~~e~qLq~L~~RLq~mE~rQqqmmsfLak~~q~P~fl~qlvq~~~~  205 (398)
                      +..+.||..+++.+..+...+..|.++++..++.+++|.++-||++++   |...+.+-+.
T Consensus         2 ~~~~kEi~~l~~~lk~~~~~i~ailek~~s~~~~~e~lEsiAAKIIkD---isdkIdkCeC   59 (121)
T PF03310_consen    2 ATIIKEISELIQELKKIESDIKAILEKLQSTEQDQENLESIAAKIIKD---ISDKIDKCEC   59 (121)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS--HHHHHHHHHHHHHHH---HHHHHHT-TT
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHH---HHHHHHhchh
Confidence            345788999999999999999999999999999999999999999995   8887766443

A family of related proteins is expressed by other members of the Caulimoviridae.; GO: 0003677 DNA binding; PDB: 3F6N_A 3K4T_D.

>smart00413 ETS erythroblast transformation specific domain

Probab=93.06  E-value=0.12  Score=43.28  Aligned_cols=57  Identities=25%  Similarity=0.437  Sum_probs=43.8

Q ss_pred             HHHHHhccCCCCCCceEEcC-CCCeEEEecccchhhhhcc-cccCCCChhhHhhhhccc
Q 015923           17 SKIYDMVEDPSTNDIVSWSS-SNNSFIVWKVAEFSRDLLP-KYFKHSNFSSFVRQLNTY   73 (398)
Q Consensus        17 ~KLy~mled~~~~~iIsWs~-~G~sFvI~d~~~F~~~vLP-~yFkh~nfsSFvRQLN~Y   73 (398)
                      .=|.++|.||++.++|+|.+ ++.-|.+.|+.+.++.-=- +-=+.-||..+-|-|..|
T Consensus         6 ~FL~~LL~d~~~~~~I~W~~k~~g~Fkl~~~~~vA~lWG~~Knk~~M~YeklSRaLRyy   64 (87)
T smart00413        6 QFLLDLLLDPENGDIIRWTDRDGGEFKLVDPEEVARLWGQRKNKPNMNYEKLSRALRYY   64 (87)
T ss_pred             HHHHHHHcCccCCCeEEeeCCCCCEEEecCHHHHHHHHhhhcCCCCCCHHHHHHHHHHH
Confidence            34788999999999999999 6889999999888774211 111234788888888776

variation of the helix-turn-helix motif

>KOG3806 consensus Predicted transcription factor [Transcription]

Probab=89.38  E-value=0.52  Score=44.21  Aligned_cols=65  Identities=18%  Similarity=0.349  Sum_probs=46.9

Q ss_pred             CCCCCcHHHHHHHhccCCCCCCceEEcC-CCCeEEEecccchhhhhcccc-cCCCChhhHhhhhccc
Q 015923            9 GNSLPPFLSKIYDMVEDPSTNDIVSWSS-SNNSFIVWKVAEFSRDLLPKY-FKHSNFSSFVRQLNTY   73 (398)
Q Consensus         9 ~~~~~~Fl~KLy~mled~~~~~iIsWs~-~G~sFvI~d~~~F~~~vLP~y-Fkh~nfsSFvRQLN~Y   73 (398)
                      .++.-....=|-++|+|++..++|+|.. +|--|.+.||++-++.-=-+= =.+=||.-.-|-|..|
T Consensus        65 ~sg~iqLwqFLleLl~d~~~~~~I~Wtg~~g~EFkl~dp~eVArlWG~rK~kp~MNYdKLSRaLRyy  131 (177)
T KOG3806|consen   65 GSGQIQLWQFLLELLQDESNAHIIAWTGKDGLEFKLVDPDEVARLWGARKNKPNMNYDKLSRALRYY  131 (177)
T ss_pred             CCchhhHHHHHHHHHhCcccCCeeEEeCCCCceEEecCHHHHHHHHhhhhCCCCCCHHHHHHHHHHH
Confidence            3444555666778899999999999999 688999999999988532221 1233666666766665

>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family

Probab=85.77  E-value=5.7  Score=36.90  Aligned_cols=56  Identities=16%  Similarity=0.370  Sum_probs=48.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 015923          136 EVEILKRDKNVLMQELVRLRQQQQATDRQLHTVGQRVQVMEQRQQQMMSFLAKAMH  191 (398)
Q Consensus       136 Eve~LKrD~~~L~qEL~~LRQqqq~~e~qLq~L~~RLq~mE~rQqqmmsfLak~~q  191 (398)
                      ....++.++..|..|+..|+++...++.++..|.+++..++..-+.|+..+-++-+
T Consensus        98 ~~~~~~~e~~~l~~e~~~l~~~~e~Le~e~~~L~~~~~~~~eDY~~L~~Im~RARk  153 (161)
T TIGR02894        98 SDQALQKENERLKNQNESLQKRNEELEKELEKLRQRLSTIEEDYQTLIDIMDRARK  153 (161)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            35567788899999999999999999999999999999999999999988876644

In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.

>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []

Probab=85.26  E-value=4.1  Score=35.97  Aligned_cols=58  Identities=24%  Similarity=0.473  Sum_probs=42.9

Q ss_pred             ccChHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015923          130 KYGLEEEVEILKRDKNVLMQELVRLRQQQ---QATDRQLHTVGQRVQVMEQRQQQMMSFLA  187 (398)
Q Consensus       130 ~~~Le~Eve~LKrD~~~L~qEL~~LRQqq---q~~e~qLq~L~~RLq~mE~rQqqmmsfLa  187 (398)
                      ...+..++.+|...+..|.+||++|..+.   .....++..|...+..++.|.+.++.+|.
T Consensus        32 ~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~~~~~~~~~~L~~el~~l~~ry~t~LellG   92 (120)
T PF12325_consen   32 LASLQEELARLEAERDELREEIVKLMEENEELRALKKEVEELEQELEELQQRYQTLLELLG   92 (120)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            34567777888888888888888887766   34446677777888888888888777663

The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].

>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=85.24  E-value=6.2  Score=32.07  Aligned_cols=42  Identities=29%  Similarity=0.368  Sum_probs=30.8

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015923          133 LEEEVEILKRDKNVLMQELVRLRQQQQATDRQLHTVGQRVQV  174 (398)
Q Consensus       133 Le~Eve~LKrD~~~L~qEL~~LRQqqq~~e~qLq~L~~RLq~  174 (398)
                      |.-||+.||..++.|.+|+..+++....++.+-+.+.+.-.+
T Consensus        23 LQmEieELKEknn~l~~e~q~~q~~reaL~~eneqlk~e~~~   64 (79)
T COG3074          23 LQMEIEELKEKNNSLSQEVQNAQHQREALERENEQLKEEQNG   64 (79)
T ss_pred             HHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            566889999999999999888877776666655555544433

>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=84.77  E-value=8.8  Score=37.15  Aligned_cols=67  Identities=21%  Similarity=0.345  Sum_probs=41.4

Q ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhHHHHHhh
Q 015923          132 GLEEEVEILKRDKNVLMQELVRLRQQQQATDRQLHTVGQRVQVMEQRQQQMMSFLAKAMHSPSFLSQLVQ  201 (398)
Q Consensus       132 ~Le~Eve~LKrD~~~L~qEL~~LRQqqq~~e~qLq~L~~RLq~mE~rQqqmmsfLak~~q~P~fl~qlvq  201 (398)
                      .+..+++.|+++.+.|.....++..+....+.++..|.+++..++...+.+..+|.+.+.   -|.++|.
T Consensus        53 ~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~~~~~l~p~m~~m~~---~L~~~v~  119 (251)
T PF11932_consen   53 ELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIEETRQELVPLMEQMID---ELEQFVE  119 (251)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHh
Confidence            344555555555555555555555555556666666666666666777777777766665   5666665

However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.

>PF04340 DUF484: Protein of unknown function, DUF484; InterPro: IPR007435 This family consists of several proteins of uncharacterised function

Probab=84.47  E-value=3.5  Score=39.23  Aligned_cols=75  Identities=17%  Similarity=0.309  Sum_probs=35.0

Q ss_pred             ecCCcccccccccccceecCCCCccCCCCcccccCCCccchhccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015923           86 ANEGFLRGQKHLLKSISRRKPAQVHGQQQPKLQNSSVGACVEVGKYGLEEEVEILKRDKNVLMQELVRLRQQQQATDRQL  165 (398)
Q Consensus        86 ~h~~F~Rg~~~LL~~IkRrk~~~~~~~qq~~~~~ss~~~~~E~g~~~Le~Eve~LKrD~~~L~qEL~~LRQqqq~~e~qL  165 (398)
                      .||.|...+++||..|+=..+..               ..+                  ......+..||++.+.++.++
T Consensus        17 ~~PdFf~~~~~ll~~l~~ph~~~---------------~av------------------SL~erQ~~~LR~~~~~L~~~l   63 (225)
T PF04340_consen   17 QHPDFFERHPELLAELRLPHPSG---------------GAV------------------SLVERQLERLRERNRQLEEQL   63 (225)
T ss_dssp             ---------------------------------------HH------------------HHHHHHHHHHHHHHHHHHHHH
T ss_pred             hCcHHHHhCHHHHHHcCCCCCCC---------------Ccc------------------cHHHHHHHHHHHHHHHHHHHH
Confidence            79999999999999985321100               011                  122334557777777778888


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCh
Q 015923          166 HTVGQRVQVMEQRQQQMMSFLAKAMHSP  193 (398)
Q Consensus       166 q~L~~RLq~mE~rQqqmmsfLak~~q~P  193 (398)
                      ..|.+.-+.-|+.++++..+..+++...
T Consensus        64 ~~Li~~Ar~Ne~~~~~~~~l~l~LL~a~   91 (225)
T PF04340_consen   64 EELIENARENEAIFQRLHRLVLALLAAR   91 (225)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            8888888888888888888888877754

; PDB: 3E98_B.

>TIGR02449 conserved hypothetical protein TIGR02449

Probab=84.30  E-value=4.2  Score=32.40  Aligned_cols=23  Identities=13%  Similarity=0.362  Sum_probs=10.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Q 015923          154 LRQQQQATDRQLHTVGQRVQVME  176 (398)
Q Consensus       154 LRQqqq~~e~qLq~L~~RLq~mE  176 (398)
                      |.++.......+..|..||..||
T Consensus        40 L~ekne~Ar~rvEamI~RLk~le   62 (65)
T TIGR02449        40 LLEKNEQARQKVEAMITRLKALE   62 (65)
T ss_pred             HHHHHHHHHHHHHHHHHhhhhhc
Confidence            33344444444555555555544

Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.

>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family

Probab=84.30  E-value=6.5  Score=42.11  Aligned_cols=67  Identities=22%  Similarity=0.279  Sum_probs=46.9

Q ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhcChhHHHHHhh
Q 015923          132 GLEEEVEILKRDKNVLMQELVRLRQQQQATDRQLHTVGQRV-QVMEQRQQQMMSFLAKAMHSPSFLSQLVQ  201 (398)
Q Consensus       132 ~Le~Eve~LKrD~~~L~qEL~~LRQqqq~~e~qLq~L~~RL-q~mE~rQqqmmsfLak~~q~P~fl~qlvq  201 (398)
                      .+..++..|.++|+.|..|..+||++...++.+++.-.+.. +.+++.++++-+-++++..   .|.+|..
T Consensus        70 ~~r~~~~~l~~~N~~l~~eN~~L~~r~~~id~~i~~av~~~~~~~~~~~~ql~~~~~~~~~---~l~~l~~  137 (472)
T TIGR03752        70 ELRKRLAKLISENEALKAENERLQKREQSIDQQIQQAVQSETQELTKEIEQLKSERQQLQG---LIDQLQR  137 (472)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH---HHHHHHH
Confidence            57888899999999999999999999999998887655443 3455556665555444332   4444443

Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.

>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation

Probab=82.94  E-value=9.7  Score=30.74  Aligned_cols=25  Identities=36%  Similarity=0.405  Sum_probs=11.0

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHH
Q 015923          133 LEEEVEILKRDKNVLMQELVRLRQQ  157 (398)
Q Consensus       133 Le~Eve~LKrD~~~L~qEL~~LRQq  157 (398)
                      |..+++.||.++..|..|...|+++
T Consensus        23 Lq~e~eeLke~n~~L~~e~~~L~~e   47 (72)
T PF06005_consen   23 LQMENEELKEKNNELKEENEELKEE   47 (72)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHH
Confidence            4445555555533333333333333

It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.

>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []

Probab=82.84  E-value=5.4  Score=29.42  Aligned_cols=41  Identities=20%  Similarity=0.363  Sum_probs=29.0

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015923          133 LEEEVEILKRDKNVLMQELVRLRQQQQATDRQLHTVGQRVQ  173 (398)
Q Consensus       133 Le~Eve~LKrD~~~L~qEL~~LRQqqq~~e~qLq~L~~RLq  173 (398)
                      ++.+.+.||+....|..+-.+|.++.+.+..++..+..+++
T Consensus         3 lE~Dy~~LK~~yd~Lk~~~~~L~~E~~~L~aev~~L~~kl~   43 (45)
T PF02183_consen    3 LERDYDALKASYDSLKAEYDSLKKENEKLRAEVQELKEKLQ   43 (45)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            55667777777777777777777777777777777766554

; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=80.94  E-value=6.2  Score=44.36  Aligned_cols=62  Identities=16%  Similarity=0.375  Sum_probs=54.1

Q ss_pred             cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 015923          131 YGLEEEVEILKRDKNVLMQELVRLRQQQQATDRQLHTVGQRVQVMEQRQQQMMSFLAKAMHS  192 (398)
Q Consensus       131 ~~Le~Eve~LKrD~~~L~qEL~~LRQqqq~~e~qLq~L~~RLq~mE~rQqqmmsfLak~~q~  192 (398)
                      ..+...+..|+.+++....||..++++...+...-..|.+|++..+.+|+.++.=+.++++.
T Consensus       561 ~ei~~rv~~Lk~~~e~Ql~~L~~l~e~~~~l~~~ae~LaeR~e~a~d~Qe~L~~R~~~vl~~  622 (717)
T PF10168_consen  561 EEIQRRVKLLKQQKEQQLKELQELQEERKSLRESAEKLAERYEEAKDKQEKLMKRVDRVLQL  622 (717)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            35677778899999999999999999999999999999999999999999999877777763

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation

Probab=80.86  E-value=7.9  Score=31.25  Aligned_cols=39  Identities=13%  Similarity=0.171  Sum_probs=15.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015923          134 EEEVEILKRDKNVLMQELVRLRQQQQATDRQLHTVGQRV  172 (398)
Q Consensus       134 e~Eve~LKrD~~~L~qEL~~LRQqqq~~e~qLq~L~~RL  172 (398)
                      +..|..+=.....|..|+..|+++...+..+-..|.+..
T Consensus        10 E~ki~~aveti~~Lq~e~eeLke~n~~L~~e~~~L~~en   48 (72)
T PF06005_consen   10 EEKIQQAVETIALLQMENEELKEKNNELKEENEELKEEN   48 (72)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence            333444333444444444444444333333333333333

It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.

>PRK15422 septal ring assembly protein ZapB; Provisional

Probab=80.48  E-value=14  Score=30.66  Aligned_cols=51  Identities=25%  Similarity=0.387  Sum_probs=32.3

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015923          133 LEEEVEILKRDKNVLMQELVRLRQQQQATDRQLHTVGQRVQVMEQRQQQMM  183 (398)
Q Consensus       133 Le~Eve~LKrD~~~L~qEL~~LRQqqq~~e~qLq~L~~RLq~mE~rQqqmm  183 (398)
                      |.-||+.||.++..|.+|+..++.....+..+.+.|.+....-..|-..|+
T Consensus        23 LqmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~~~WqerLr~LL   73 (79)
T PRK15422         23 LQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQALL   73 (79)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            566788888888888888777655555555555555554444444444443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	398
2ldu_A	125	Solution Nmr Structure Of Heat Shock Factor Protein		5e-23
1hks_A	106	Solution Structure Of The Dna-Binding Domain Of Dro		3e-16
3hts_B	102	Heat Shock Transcription FactorDNA COMPLEX Length =		3e-15
1fym_A	92	Serendipitous Crystal Structure Containing The Heat		7e-15
1fbu_A	90	Heat Shock Transcription Factor Dna Binding Domain		8e-15
1fbs_A	90	Heat Shock Transcription Factor Dna Binding Domain		4e-14
1fbq_A	90	Heat Shock Transcription Factor Dna Binding Domain		5e-14
1fyk_A	92	Serendipitous Crystal Structure Containing The Heat		6e-14

>pdb|2LDU|A Chain A, Solution Nmr Structure Of Heat Shock Factor Protein 1 Dna Binding Domain From Homo Sapiens, Northeast Structural Genomics Consortium Target Hr3023c Length = 125

Iteration: 1
 Score =  105 bits (262), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 50/109 (45%), Positives = 74/109 (67%), Gaps = 11/109 (10%)
Query: 7   ANGNSLPPFLSKIYDMVEDPSTNDIVSWSSSNNSFIVWKVAEFSRDLLPKYFKHSNFSSF 66
           A  +++P FL+K++ +V DP T+ ++ WS S NSF V+   +F++++LPKYFKH+N +SF
Sbjct: 12  AGPSNVPAFLTKLWTLVSDPDTDALICWSPSGNSFHVFDQGQFAKEVLPKYFKHNNMASF 71
Query: 67  VRQLNTYGFRKV-----------DPDRYEFANEGFLRGQKHLLKSISRR 104
           VRQLN YGFRKV           + D  EF +  FLRGQ+ LL++I R+
Sbjct: 72  VRQLNMYGFRKVVHIEQGGLVKPERDDTEFQHPCFLRGQEQLLENIKRK 120

>pdb|1HKS|A Chain A, Solution Structure Of The Dna-Binding Domain Of Drosophila Heat Shock Transcription Factor Length = 106

Iteration: 1
 Score = 82.8 bits (203), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 39/104 (37%), Positives = 62/104 (59%), Gaps = 10/104 (9%)
Query: 11  SLPPFLSKIYDMVEDPSTNDIVSWSSSNNSFIVWKVAEFSRDLLPKYFKHSNFSSFVRQL 70
            +P FL+K++ +V+D  TN ++ W+    SF++   A+F+++LLP  +KH+N +SF+RQL
Sbjct: 3   GVPAFLAKLWRLVDDADTNRLICWTKDGQSFVIQNQAQFAKELLPLNYKHNNMASFIRQL 62
Query: 71  NTYGFRKV----------DPDRYEFANEGFLRGQKHLLKSISRR 104
           N YGF K+          D D  EF++  F R    LL  I R+
Sbjct: 63  NMYGFHKITSIDNGGLRFDRDEIEFSHPFFKRNSPFLLDQIKRK 106

>pdb|3HTS|B Chain B, Heat Shock Transcription FactorDNA COMPLEX Length = 102

Iteration: 1
 Score = 79.3 bits (194), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 39/87 (44%), Positives = 53/87 (60%), Gaps = 11/87 (12%)
Query: 13 PPFLSKIYDMVEDPSTNDIVSWSSSNNSFIVWKVAEFSRDLLPKYFKHSNFSSFVRQLNT 72
          P F++K++ MV D S    + WS+S  S +V     F +++LPKYFKHSNF+SFVRQLN 
Sbjct: 13 PAFVNKLWSMVNDKSNEKFIHWSTSGESIVVPNRERFVQEVLPKYFKHSNFASFVRQLNM 72
Query: 73 YGFRKV-----------DPDRYEFANE 88
          YG+ KV           +  R+EF NE
Sbjct: 73 YGWHKVQDVKSGSMLSNNDSRWEFENE 99

>pdb|1FYM|A Chain A, Serendipitous Crystal Structure Containing The Heat Shock Transcription Factor's Dna Binding Domain And Cognate Dna In A Tail-To-Tail Orientation Length = 92

Iteration: 1
 Score = 78.6 bits (192), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 39/87 (44%), Positives = 53/87 (60%), Gaps = 11/87 (12%)
Query: 13 PPFLSKIYDMVEDPSTNDIVSWSSSNNSFIVWKVAEFSRDLLPKYFKHSNFSSFVRQLNT 72
          P F++K++ MV D S    + WS+S  S +V     F +++LPKYFKHSNF+SFVRQLN 
Sbjct: 3  PAFVNKLWSMVNDKSNEKFIHWSTSGESIVVPNRERFVQEVLPKYFKHSNFASFVRQLNM 62
Query: 73 YGFRKV-----------DPDRYEFANE 88
          YG+ KV           +  R+EF NE
Sbjct: 63 YGWHKVQDVKSGSMLSNNDSRWEFENE 89

>pdb|1FBU|A Chain A, Heat Shock Transcription Factor Dna Binding Domain Length = 90

Iteration: 1
 Score = 78.2 bits (191), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 39/87 (44%), Positives = 53/87 (60%), Gaps = 11/87 (12%)
Query: 13 PPFLSKIYDMVEDPSTNDIVSWSSSNNSFIVWKVAEFSRDLLPKYFKHSNFSSFVRQLNT 72
          P F++K++ MV D S    + WS+S  S +V     F +++LPKYFKHSNF+SFVRQLN 
Sbjct: 1  PAFVNKLWSMVNDKSNEKFIHWSTSGESIVVPNRERFVQEVLPKYFKHSNFASFVRQLNM 60
Query: 73 YGFRKV-----------DPDRYEFANE 88
          YG+ KV           +  R+EF NE
Sbjct: 61 YGWHKVQDVKSGSMLSNNDSRWEFENE 87

>pdb|1FBS|A Chain A, Heat Shock Transcription Factor Dna Binding Domain Containing The P237a Mutation Length = 90

Iteration: 1
 Score = 75.5 bits (184), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 38/87 (43%), Positives = 52/87 (59%), Gaps = 11/87 (12%)
Query: 13 PPFLSKIYDMVEDPSTNDIVSWSSSNNSFIVWKVAEFSRDLLPKYFKHSNFSSFVRQLNT 72
          P F++K++ MV D S    + WS+S  S +V     F +++L KYFKHSNF+SFVRQLN 
Sbjct: 1  PAFVNKLWSMVNDKSNEKFIHWSTSGESIVVPNRERFVQEVLAKYFKHSNFASFVRQLNM 60
Query: 73 YGFRKV-----------DPDRYEFANE 88
          YG+ KV           +  R+EF NE
Sbjct: 61 YGWHKVQDVKSGSMLSNNDSRWEFENE 87

>pdb|1FBQ|A Chain A, Heat Shock Transcription Factor Dna Binding Domain Containing The P237k Mutation Length = 90

Iteration: 1
 Score = 75.5 bits (184), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 38/87 (43%), Positives = 52/87 (59%), Gaps = 11/87 (12%)
Query: 13 PPFLSKIYDMVEDPSTNDIVSWSSSNNSFIVWKVAEFSRDLLPKYFKHSNFSSFVRQLNT 72
          P F++K++ MV D S    + WS+S  S +V     F +++L KYFKHSNF+SFVRQLN 
Sbjct: 1  PAFVNKLWSMVNDKSNEKFIHWSTSGESIVVPNRERFVQEVLKKYFKHSNFASFVRQLNM 60
Query: 73 YGFRKV-----------DPDRYEFANE 88
          YG+ KV           +  R+EF NE
Sbjct: 61 YGWHKVQDVKSGSMLSNNDSRWEFENE 87

>pdb|1FYK|A Chain A, Serendipitous Crystal Structure Containing The Heat Shock Transcription Factor's Dna Binding Domain And Cognate Dna That Is Translationally Disordered Length = 92

Iteration: 1
 Score = 75.1 bits (183), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 38/87 (43%), Positives = 52/87 (59%), Gaps = 11/87 (12%)
Query: 13 PPFLSKIYDMVEDPSTNDIVSWSSSNNSFIVWKVAEFSRDLLPKYFKHSNFSSFVRQLNT 72
          P F++K++  V D S    + WS+S  S +V     F +++LPKYFKHSNF+SFVRQLN 
Sbjct: 3  PAFVNKLWSXVNDKSNEKFIHWSTSGESIVVPNRERFVQEVLPKYFKHSNFASFVRQLNX 62
Query: 73 YGFRKV-----------DPDRYEFANE 88
          YG+ KV           +  R+EF NE
Sbjct: 63 YGWHKVQDVKSGSXLSNNDSRWEFENE 89

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	398
1hks_A	106	Heat-shock transcription factor; transcription reg	8e-52
2ldu_A	125	Heat shock factor protein 1; structural genomics,	9e-50
3hts_B	102	Heat shock transcription factor; transcription reg	3e-43
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-09

>1hks_A Heat-shock transcription factor; transcription regulation; NMR {Drosophila melanogaster} SCOP: a.4.5.22 PDB: 1hkt_A Length = 106

 Score =  167 bits (426), Expect = 8e-52
 Identities = 40/106 (37%), Positives = 64/106 (60%), Gaps = 10/106 (9%)

Query: 9   GNSLPPFLSKIYDMVEDPSTNDIVSWSSSNNSFIVWKVAEFSRDLLPKYFKHSNFSSFVR 68
           G+ +P FL+K++ +V+D  TN ++ W+    SF++   A+F+++LLP  +KH+N +SF+R
Sbjct: 1   GSGVPAFLAKLWRLVDDADTNRLICWTKDGQSFVIQNQAQFAKELLPLNYKHNNMASFIR 60

Query: 69  QLNTYGFRKV----------DPDRYEFANEGFLRGQKHLLKSISRR 104
           QLN YGF K+          D D  EF++  F R    LL  I R+
Sbjct: 61  QLNMYGFHKITSIDNGGLRFDRDEIEFSHPFFKRNSPFLLDQIKRK 106

>2ldu_A Heat shock factor protein 1; structural genomics, northeast structural genomics consortiu DNA-binding, PSI-biology, protein structure initiative; NMR {Homo sapiens} Length = 125

 Score =  163 bits (414), Expect = 9e-50
 Identities = 51/119 (42%), Positives = 76/119 (63%), Gaps = 11/119 (9%)

Query: 1   MSSSSAANGNSLPPFLSKIYDMVEDPSTNDIVSWSSSNNSFIVWKVAEFSRDLLPKYFKH 60
              S  A  +++P FL+K++ +V DP T+ ++ WS S NSF V+   +F++++LPKYFKH
Sbjct: 6   HHHSHMAGPSNVPAFLTKLWTLVSDPDTDALICWSPSGNSFHVFDQGQFAKEVLPKYFKH 65

Query: 61  SNFSSFVRQLNTYGFRKV-----------DPDRYEFANEGFLRGQKHLLKSISRRKPAQ 108
           +N +SFVRQLN YGFRKV           + D  EF +  FLRGQ+ LL++I R+  + 
Sbjct: 66  NNMASFVRQLNMYGFRKVVHIEQGGLVKPERDDTEFQHPCFLRGQEQLLENIKRKVTSV 124

>3hts_B Heat shock transcription factor; transcription regulation, DNA-binding protein, complex (WING helix_TURN_ helix-DNA); 1.75A {Kluyveromyces lactis} SCOP: a.4.5.22 PDB: 2hts_A 1fyk_A* 1fym_A 1fyl_A 3hsf_A 1fbu_A 1fbs_A 1fbq_A Length = 102

 Score =  145 bits (367), Expect = 3e-43
 Identities = 40/100 (40%), Positives = 57/100 (57%), Gaps = 11/100 (11%)

Query: 2   SSSSAANGNSLPPFLSKIYDMVEDPSTNDIVSWSSSNNSFIVWKVAEFSRDLLPKYFKHS 61
           S  ++    + P F++K++ MV D S    + WS+S  S +V     F +++LPKYFKHS
Sbjct: 2   SRRASVGSMARPAFVNKLWSMVNDKSNEKFIHWSTSGESIVVPNRERFVQEVLPKYFKHS 61

Query: 62  NFSSFVRQLNTYGFRKV-----------DPDRYEFANEGF 90
           NF+SFVRQLN YG+ KV           +  R+EF NE  
Sbjct: 62  NFASFVRQLNMYGWHKVQDVKSGSMLSNNDSRWEFENERH 101

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 58.3 bits (140), Expect = 2e-09
 Identities = 74/485 (15%), Positives = 144/485 (29%), Gaps = 134/485 (27%)

Query: 1   MSSSSAANGNSLPPFLSKI---YDM--VEDPSTN--------DIVSWSSSNNS--FIVWK 45
                    + L  F       +D   V+D   +         I+    + +    + W 
Sbjct: 11  TGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWT 70

Query: 46  --------VAEFSRDLL-PKY-FKHSNFSSFVRQLNTYGFRKVDPDRYEFANEGFLRGQK 95
                   V +F  ++L   Y F  S   +  RQ        +    Y    +      +
Sbjct: 71  LLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQ------PSMMTRMYIEQRDRLYNDNQ 124

Query: 96  HLLK-SISRRKPAQVHGQQQPKLQNSSVGACVEV-GKYGLEEEVEILKRDKNVLMQELVR 153
              K ++SR +P   + + +  L        V + G  G           K  +  ++  
Sbjct: 125 VFAKYNVSRLQP---YLKLRQALLELRPAKNVLIDGVLGS---------GKTWVALDVCL 172

Query: 154 LRQQQQATDRQLH--TVGQR---VQVMEQRQQQMMSFLAKAMHSPSFLSQLVQQQNDSNR 208
             + Q   D ++    +        V+E   Q+++  +      P++ S+     N   R
Sbjct: 173 SYKVQCKMDFKIFWLNLKNCNSPETVLEM-LQKLLYQI-----DPNWTSRSDHSSNIKLR 226

Query: 209 HISGSNKKRRL------PR--------QDEENTVGAYD-----------SSIPN--GQIV 241
             S   + RRL                Q+ +    A++             + +      
Sbjct: 227 IHSIQAELRRLLKSKPYENCLLVLLNVQNAK-AWNAFNLSCKILLTTRFKQVTDFLSAAT 285

Query: 242 KFQPSMNEA--------AKAMLHQIMKMNSPSRLEPTMSNLSTFLIDNIPSANALENGHS 293
               S++           K++L + +    P  L   +   +   +  I  A ++ +G +
Sbjct: 286 TTHISLDHHSMTLTPDEVKSLLLKYLDC-RPQDLPREVLTTNPRRLSII--AESIRDGLA 342

Query: 294 SSQ------------ISGVTLSEVPPNSGQSNMSTESRF----HVPSSAISEIQCSPCVS 337
           +              I   +L+ + P   +      S F    H+P+  +S I      S
Sbjct: 343 TWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKS 402

Query: 338 DSVK-VNPTQEKS---KHNSGNDTVLPNFPQLQGIASESTISIPDVNFVLKFGSNSFGWN 393
           D +  VN   + S   K                    ESTISIP +   LK    +    
Sbjct: 403 DVMVVVNKLHKYSLVEKQPK-----------------ESTISIPSIYLELKVKLENEY-- 443

Query: 394 NVHRR 398
            +HR 
Sbjct: 444 ALHRS 448

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	398
1hks_A	106	Heat-shock transcription factor; transcription reg	100.0
2ldu_A	125	Heat shock factor protein 1; structural genomics,	100.0
3hts_B	102	Heat shock transcription factor; transcription reg	99.97
1fli_A	98	FLI-1; transcription/DNA; NMR {Homo sapiens} SCOP:	90.21
1awc_A	110	Protein (GA binding protein alpha); complex (trans	89.4
1bc8_C	93	SAP-1, protein (SAP-1 ETS domain); DNA-binding dom	88.65
2ypr_A	102	Protein FEV; transcription; 2.64A {Homo sapiens} P	88.58
1yo5_C	97	SAM pointed domain containing ETS transcription fa	87.69
4avp_A	106	ETS translocation variant 1; transcription, transc	87.68
1wwx_A	107	E74-like factor 5 ESE-2B; DNA binding, transcripti	87.58
2dao_A	118	Transcription factor ETV6; ETS domain, structural	86.51
2jee_A	81	YIIU; FTSZ, septum, coiled-coil, cell division, ce	86.39
1gvj_A	146	C-ETS-1 protein, P54; transcription, autoinhibitio	85.68
3jtg_A	103	ETS-related transcription factor ELF-3; ELF3, prot	83.08
2nny_A	171	C-ETS-1 protein, P54; protein-DNA complex, transcr	82.31
1deb_A	54	APC protein, adenomatous polyposis coli protein; c	81.55
1hbx_G	157	ETS-domain protein ELK-4; gene regulation, transcr	80.38

>1hks_A Heat-shock transcription factor; transcription regulation; NMR {Drosophila melanogaster} SCOP: a.4.5.22 PDB: 1hkt_A

Probab=100.00  E-value=5.6e-40  Score=277.54  Aligned_cols=95  Identities=40%  Similarity=0.827  Sum_probs=91.5

Q ss_pred             CCCCcHHHHHHHhccCCCCCCceEEcCCCCeEEEecccchhhhhcccccCCCChhhHhhhhcccCccccc----------
Q 015923           10 NSLPPFLSKIYDMVEDPSTNDIVSWSSSNNSFIVWKVAEFSRDLLPKYFKHSNFSSFVRQLNTYGFRKVD----------   79 (398)
Q Consensus        10 ~~~~~Fl~KLy~mled~~~~~iIsWs~~G~sFvI~d~~~F~~~vLP~yFkh~nfsSFvRQLN~YGFrKv~----------   79 (398)
                      +++|+||.|||+||+|++++++|+|+++|++|||+|+.+|+++|||+||||+||+|||||||+|||||+.          
T Consensus         2 ~~~p~F~~KL~~mv~d~~~~~iI~W~~~G~sFvI~d~~~F~~~vLp~yFkh~n~~SFvRQLN~YGF~Kv~~~~~~~~~~~   81 (106)
T 1hks_A            2 SGVPAFLAKLWRLVDDADTNRLICWTKDGQSFVIQNQAQFAKELLPLNYKHNNMASFIRQLNMYGFHKITSIDNGGLRFD   81 (106)
T ss_dssp             TTCCTTHHHHHHHHSSSTTTTTSEESTTTSCEECSCCSTTTTTTSTTTTSCCCHHHHHHHHHHHCCCCSSCSSSCCSSCT
T ss_pred             CCcCcHHHHHHHHhcCCCCCCEEEEeCCCCEEEECCHHHHHHHHhHHhcCCCcHHHHHHhhhcCCCeEEecccccCccCC
Confidence            4688999999999999999999999999999999999999999999999999999999999999999984          


Q ss_pred             CCceeEecCCcccccccccccceec
Q 015923           80 PDRYEFANEGFLRGQKHLLKSISRR  104 (398)
Q Consensus        80 ~d~~eF~h~~F~Rg~~~LL~~IkRr  104 (398)
                      ++.|+|+|++|+||+++||.+|+||
T Consensus        82 ~~~~ef~h~~F~Rg~~~LL~~IkRk  106 (106)
T 1hks_A           82 RDEIEFSHPFFKRNSPFLLDQIKRK  106 (106)
T ss_dssp             TSTTEECCTTCCSSCTTSTTTCCCC
T ss_pred             CCceEEECcCccCcCHHHHhhCcCC
Confidence            5789999999999999999999996

>2ldu_A Heat shock factor protein 1; structural genomics, northeast structural genomics consortiu DNA-binding, PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=100.00  E-value=1.5e-39  Score=282.76  Aligned_cols=105  Identities=49%  Similarity=0.891  Sum_probs=98.7

Q ss_pred             CCCCCCCCCCcHHHHHHHhccCCCCCCceEEcCCCCeEEEecccchhhhhcccccCCCChhhHhhhhcccCccccc----
Q 015923            4 SSAANGNSLPPFLSKIYDMVEDPSTNDIVSWSSSNNSFIVWKVAEFSRDLLPKYFKHSNFSSFVRQLNTYGFRKVD----   79 (398)
Q Consensus         4 s~~~~~~~~~~Fl~KLy~mled~~~~~iIsWs~~G~sFvI~d~~~F~~~vLP~yFkh~nfsSFvRQLN~YGFrKv~----   79 (398)
                      |.+......++||.|||+||+||++++||+|+++|++|||+|+.+|+++|||+||||+||+|||||||+|||+|+.    
T Consensus         9 ~~~~~~~~~~~F~~KL~~ml~d~~~~~iI~W~~~G~sFvV~d~~~F~~~vLp~yFkh~nfsSFvRQLN~YGF~Kv~~~~~   88 (125)
T 2ldu_A            9 SHMAGPSNVPAFLTKLWTLVSDPDTDALICWSPSGNSFHVFDQGQFAKEVLPKYFKHNNMASFVRQLNMYGFRKVVHIEQ   88 (125)
T ss_dssp             SSCCSSCCCCHHHHHHHHHHHCTTTTTTEEECTTSSEEEECCHHHHHHHHHHHHSSCCCHHHHHHHHHHTTCEEEECSCC
T ss_pred             cccccCCCCCcHHHHHHHHhhCCCCCCEEEEcCCCCEEEEeCHHHHHHHHhHHhcCCCcHHHHHHHhcccCceEEeeccc
Confidence            3456778899999999999999999999999999999999999999999999999999999999999999999983    


Q ss_pred             -------CCceeEecCCcccccccccccceecCCCC
Q 015923           80 -------PDRYEFANEGFLRGQKHLLKSISRRKPAQ  108 (398)
Q Consensus        80 -------~d~~eF~h~~F~Rg~~~LL~~IkRrk~~~  108 (398)
                             ++.|+|+|++|+||+++||.+|+||++..
T Consensus        89 ~~~~~~~~~~~eF~H~~F~Rg~~~LL~~IkRk~~~~  124 (125)
T 2ldu_A           89 GGLVKPERDDTEFQHPCFLRGQEQLLENIKRKVTSV  124 (125)
T ss_dssp             SSSSSCSSCCEEEECTTCBTTBGGGTTTSCCCTTSC
T ss_pred             cccccCCCCccEEECccccCCCHHHHhhCcCCCCCC
Confidence                   57899999999999999999999998753

>3hts_B Heat shock transcription factor; transcription regulation, DNA-binding protein, complex (WING helix_TURN_ helix-DNA); 1.75A {Kluyveromyces lactis} SCOP: a.4.5.22 PDB: 2hts_A 1fyk_A* 1fym_A 1fyl_A 3hsf_A 1fbu_A 1fbs_A 1fbq_A

Probab=99.97  E-value=1.3e-33  Score=237.69  Aligned_cols=84  Identities=46%  Similarity=0.860  Sum_probs=77.9

Q ss_pred             CCCCCCCCcHHHHHHHhccCCCCCCceEEcCCCCeEEEecccchhhhhcccccCCCChhhHhhhhcccCccccc------
Q 015923            6 AANGNSLPPFLSKIYDMVEDPSTNDIVSWSSSNNSFIVWKVAEFSRDLLPKYFKHSNFSSFVRQLNTYGFRKVD------   79 (398)
Q Consensus         6 ~~~~~~~~~Fl~KLy~mled~~~~~iIsWs~~G~sFvI~d~~~F~~~vLP~yFkh~nfsSFvRQLN~YGFrKv~------   79 (398)
                      +.+.+.+|+||.|||+||+|+++++||+|+++|++|||+|+.+|+++|||+||||+||+||+||||+|||+|+.      
T Consensus         6 s~~~~~~p~F~~KL~~ml~d~~~~~iI~W~~~G~sfiI~d~~~F~~~VLp~yFkh~nfsSFvRQLN~YGF~Kv~~~~~g~   85 (102)
T 3hts_B            6 SVGSMARPAFVNKLWSMVNDKSNEKFIHWSTSGESIVVPNRERFVQEVLPKYFKHSNFASFVRQLNMYGWHKVQDVKSGS   85 (102)
T ss_dssp             ----CCSCHHHHHHHHHHHCGGGTTTSEECTTSCSEEESCHHHHHHHTHHHHCSSCCHHHHHHHHHHTTEEECC------
T ss_pred             CCCCCCCCcHHHHHHHHhcCCCCCCEEEEeCCCCEEEEcCHHHHHHHHHHHhcCCCcHHHHHHHhhcCCceEeeccccCc
Confidence            45668899999999999999999999999999999999999999999999999999999999999999999997      


Q ss_pred             -----CCceeEecCC
Q 015923           80 -----PDRYEFANEG   89 (398)
Q Consensus        80 -----~d~~eF~h~~   89 (398)
                           +++|||+|++
T Consensus        86 ~~~~~~~~wEF~n~~  100 (102)
T 3hts_B           86 MLSNNDSRWEFENER  100 (102)
T ss_dssp             ---CCSCCEEEEECC
T ss_pred             ccCCCcCCeEecCCC
Confidence                 7899999986

>1fli_A FLI-1; transcription/DNA; NMR {Homo sapiens} SCOP: a.4.5.21

Probab=90.21  E-value=0.14  Score=42.52  Aligned_cols=62  Identities=18%  Similarity=0.338  Sum_probs=46.6

Q ss_pred             CCcHHHHHHHhccCCCCCCceEEcCCCCeEEEecccchhhhhcc-cccCCCChhhHhhhhccc
Q 015923           12 LPPFLSKIYDMVEDPSTNDIVSWSSSNNSFIVWKVAEFSRDLLP-KYFKHSNFSSFVRQLNTY   73 (398)
Q Consensus        12 ~~~Fl~KLy~mled~~~~~iIsWs~~G~sFvI~d~~~F~~~vLP-~yFkh~nfsSFvRQLN~Y   73 (398)
                      .-....=|.++|+|++..++|+|...+.-|.+.|+++.++.-=. +-=+.-||.-.-|-|..|
T Consensus         5 ~~~LwqFL~~LL~d~~~~~~I~W~~~~g~Fklvd~e~VArlWG~rK~kp~MnYeklSRaLRyY   67 (98)
T 1fli_A            5 QIQLWQFLLELLSDSANASCITWEGTNGEFKMTDPDEVARRWGERKSKPNMNYDKLSRALRYY   67 (98)
T ss_dssp             SCCSHHHHHHHHHTCSSCSSEECTTSSSSCEECCHHHHHHHHHHHTCCTTCSSHHHHHHHHHH
T ss_pred             ceeHHHHHHHHhcCcccCCCeEEeCCCCEEEEcCHHHHHHHHHhccCCCCcCHHHHHHHHHHH
Confidence            34455667788999999999999999999999999888774322 111345788888888776

>1awc_A Protein (GA binding protein alpha); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: a.4.5.21

Probab=89.40  E-value=0.14  Score=43.40  Aligned_cols=58  Identities=16%  Similarity=0.297  Sum_probs=44.5

Q ss_pred             HHHHHhccCCCCCCceEEcCCCCeEEEecccchhhhhccc-ccCCCChhhHhhhhcccC
Q 015923           17 SKIYDMVEDPSTNDIVSWSSSNNSFIVWKVAEFSRDLLPK-YFKHSNFSSFVRQLNTYG   74 (398)
Q Consensus        17 ~KLy~mled~~~~~iIsWs~~G~sFvI~d~~~F~~~vLP~-yFkh~nfsSFvRQLN~YG   74 (398)
                      .=|.++|+|++..++|+|...+.-|.+.|+++.++.-=.+ -=..-||...-|-|..|.
T Consensus         5 qFLleLL~d~~~~~~I~W~~~~geFkl~d~e~VArlWG~rKnkp~MnYeKlSRaLRyYY   63 (110)
T 1awc_A            5 QFLLELLTDKDARDCISWVGDEGEFKLNQPELVAQKWGQRKNKPTMNYEKLSRALRYYY   63 (110)
T ss_dssp             HHHHHHHTCTTTTTTSEECSSSSEEECSSHHHHHHHHHHHHTCTTCCHHHHHHHHHGGG
T ss_pred             HHHHHHhcCcccCCceEEeCCCCEEEecCHHHHHHHHHHccCCCCCCHHHHHHHHHHHH
Confidence            3467889999999999999999999999998887753222 112346888888887773

>1bc8_C SAP-1, protein (SAP-1 ETS domain); DNA-binding domain, winged helix-turn-helix, DNA-binding specificity, transcription/DNA complex; HET: DNA; 1.93A {Homo sapiens} SCOP: a.4.5.21 PDB: 1bc7_C* 1k6o_A 1dux_C*

Probab=88.65  E-value=0.12  Score=42.59  Aligned_cols=75  Identities=17%  Similarity=0.391  Sum_probs=54.7

Q ss_pred             CCcHHHHHHHhccCCCCCCceEEcCCCCeEEEecccchhhhhcc-cccCCCChhhHhhhhcccCc----ccccCCceeEe
Q 015923           12 LPPFLSKIYDMVEDPSTNDIVSWSSSNNSFIVWKVAEFSRDLLP-KYFKHSNFSSFVRQLNTYGF----RKVDPDRYEFA   86 (398)
Q Consensus        12 ~~~Fl~KLy~mled~~~~~iIsWs~~G~sFvI~d~~~F~~~vLP-~yFkh~nfsSFvRQLN~YGF----rKv~~d~~eF~   86 (398)
                      .-....=|.++|.|++..++|+|...+.-|.+.|+++.++.-=. +-=..-||...-|-|..|-=    +||...+..|.
T Consensus         4 ~i~Lw~FL~~LL~d~~~~~~I~W~~~~g~Fkl~d~~~VArlWG~rKnk~~MnYeklSRaLRyYY~~~il~Kv~g~r~vY~   83 (93)
T 1bc8_C            4 AITLWQFLLQLLQKPQNKHMICWTSNDGQFKLLQAEEVARLWGIRKNKPNMNYDKLSRALRYYYVKNIIKKVNGQKFVYK   83 (93)
T ss_dssp             CCCHHHHHHHHTTCGGGTTTSEECSSSSEEECTTHHHHHHHHHHHHTCTTCCHHHHHHHHHHHHHHTSEEECTTSTTEEE
T ss_pred             cccHHHHHHHHhcCcccCCceEEeCCCCEEEecCHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHhcCcEEecCCCeEEEE
Confidence            34455668899999999999999998889999999888875322 22245589999999988742    24444555554

>2ypr_A Protein FEV; transcription; 2.64A {Homo sapiens} PDB: 1fli_A

Probab=88.58  E-value=0.23  Score=41.52  Aligned_cols=74  Identities=19%  Similarity=0.328  Sum_probs=52.9

Q ss_pred             CcHHHHHHHhccCCCCCCceEEcCCCCeEEEecccchhhhhcc-cccCCCChhhHhhhhcccCc----ccccCCceeEe
Q 015923           13 PPFLSKIYDMVEDPSTNDIVSWSSSNNSFIVWKVAEFSRDLLP-KYFKHSNFSSFVRQLNTYGF----RKVDPDRYEFA   86 (398)
Q Consensus        13 ~~Fl~KLy~mled~~~~~iIsWs~~G~sFvI~d~~~F~~~vLP-~yFkh~nfsSFvRQLN~YGF----rKv~~d~~eF~   86 (398)
                      -....=|.++|+|+++.++|+|...+.-|.+.|+++.++.-=. +-=..-||.-+-|-|..|-=    +||...+..|.
T Consensus         8 i~LwqFLl~LL~d~~~~~~I~W~~~~g~Fkl~dp~~VArlWG~rKnkp~MnYeKlSRaLRyYY~k~ii~Kv~Gkr~vYk   86 (102)
T 2ypr_A            8 IQLWQFLLELLADRANAGCIAWEGGHGEFKLTDPDEVARRWGERKSKPNMNYDKLSRALRYYYDKNIMSKVHGKRYAYR   86 (102)
T ss_dssp             CCHHHHHHHHHTCGGGTTTCEECSSTTEEECSSHHHHHHHHHHHTTCTTCCHHHHHHHHTHHHHTTSEEECSSCSSEEE
T ss_pred             EeHHHHHHHHhcCCCCCCcccccCCCceEEecChHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCcEEecCCCeEEEE
Confidence            4456667899999999999999999999999999888774221 11135589999998887732    34444444443

>1yo5_C SAM pointed domain containing ETS transcription factor; protein-DNA complex, double helix, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.4.5.21

Probab=87.69  E-value=0.19  Score=41.65  Aligned_cols=72  Identities=15%  Similarity=0.204  Sum_probs=50.8

Q ss_pred             CCCCCCCCCcHHHHHHHhccCCC-CCCceEEcC-CCCeEEEecccchhhhhcc-cccCCCChhhHhhhhcccCcc
Q 015923            5 SAANGNSLPPFLSKIYDMVEDPS-TNDIVSWSS-SNNSFIVWKVAEFSRDLLP-KYFKHSNFSSFVRQLNTYGFR   76 (398)
Q Consensus         5 ~~~~~~~~~~Fl~KLy~mled~~-~~~iIsWs~-~G~sFvI~d~~~F~~~vLP-~yFkh~nfsSFvRQLN~YGFr   76 (398)
                      .+.++++......=|.++|+||+ ..++|+|.. ++.-|.+.|+++.++.-=. +-=..-||...-|-|..|--+
T Consensus         3 ~~~~~~~~i~LwqFL~eLL~d~~~~~~~I~W~~~~~g~Fkl~d~~~VArlWG~rKnkp~MnYeklSRaLRyYY~~   77 (97)
T 1yo5_C            3 LDALGSQPIHLWQFLKELLLKPHSYGRFIRWLNKEKGIFKIEDSAQVARLWGIRKNRPAMNYDKLSRSIRQYYKK   77 (97)
T ss_dssp             ------CCCCHHHHHHHHHHCHHHHTTTEEEEETTTTEEEESCHHHHHHHHHHHHTCTTCCHHHHHHHHHHTTTT
T ss_pred             cCCCCCCeeEHHHHHHHHhcCcccCCCceEeecCCCCEEEecCHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHhc
Confidence            34455566777888999999986 579999985 6789999999888875322 222355899999999888544

>4avp_A ETS translocation variant 1; transcription, transcriptional activation and repression, DN binding protein, E twenty-SIX, erwing sarcoma; 1.82A {Homo sapiens} PDB: 4b06_A

Probab=87.68  E-value=0.37  Score=40.50  Aligned_cols=76  Identities=21%  Similarity=0.361  Sum_probs=55.2

Q ss_pred             CCCcHHHHHHHhccCCCCCCceEEcCCCCeEEEecccchhhhhcc-cccCCCChhhHhhhhcccCc----ccccCCceeE
Q 015923           11 SLPPFLSKIYDMVEDPSTNDIVSWSSSNNSFIVWKVAEFSRDLLP-KYFKHSNFSSFVRQLNTYGF----RKVDPDRYEF   85 (398)
Q Consensus        11 ~~~~Fl~KLy~mled~~~~~iIsWs~~G~sFvI~d~~~F~~~vLP-~yFkh~nfsSFvRQLN~YGF----rKv~~d~~eF   85 (398)
                      +.-....=|.++|+|+++.++|+|...+..|.+.|+++.++.-=. +-=+.-||..+-|-|..|-=    +||...+..|
T Consensus        10 g~i~LwqFL~~LL~d~~~~~~I~W~~~~~~Fkl~dp~~VA~lWG~rKnkp~M~YeKlSRaLRyYY~kgii~Kv~G~r~vY   89 (106)
T 4avp_A           10 GSLQLWQFLVALLDDPSNSHFIAWTGRGMEFKLIEPEEVARRWGIQKNRPAMNYDKLSRSLRYYYEKGIMQKVAGERYVY   89 (106)
T ss_dssp             -CCCHHHHHHHHHHCGGGTTTEEECSSTTEEEESSHHHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHTSEEECTTCSSEE
T ss_pred             CcEeHHHHHHHHHcCccCCCCCcccCCCceEEecCHHHHHHHHHhccCCCCcCHHHHHHHHHHHHhcCeEEecCCCeEEE
Confidence            344556678899999999999999999989999999888774322 11235589999999988732    3555555555


Q ss_pred             e
Q 015923           86 A   86 (398)
Q Consensus        86 ~   86 (398)
                      .
T Consensus        90 k   90 (106)
T 4avp_A           90 K   90 (106)
T ss_dssp             E
T ss_pred             E
Confidence            4

>1wwx_A E74-like factor 5 ESE-2B; DNA binding, transcriptional activation and repression, structural genomics; NMR {Homo sapiens} SCOP: a.4.5.21

Probab=87.58  E-value=0.34  Score=40.83  Aligned_cols=79  Identities=18%  Similarity=0.317  Sum_probs=55.0

Q ss_pred             CCCCCCCcHHHHHHHhccCCC-CCCceEEcC-CCCeEEEecccchhhhhcc-cccCCCChhhHhhhhcccC----ccccc
Q 015923            7 ANGNSLPPFLSKIYDMVEDPS-TNDIVSWSS-SNNSFIVWKVAEFSRDLLP-KYFKHSNFSSFVRQLNTYG----FRKVD   79 (398)
Q Consensus         7 ~~~~~~~~Fl~KLy~mled~~-~~~iIsWs~-~G~sFvI~d~~~F~~~vLP-~yFkh~nfsSFvRQLN~YG----FrKv~   79 (398)
                      +++++......=|.++|.|++ ..++|+|.. +..-|.+.|+++.++.-=. +-=..-||...-|-|..|-    .+||+
T Consensus         3 sg~~g~i~LwqFL~eLL~d~~~~~~~I~W~~~~~g~Fkl~d~e~VArlWG~rKnkp~MnYeKlSRaLRyYY~~~ii~Kv~   82 (107)
T 1wwx_A            3 SGSSGSSHLWEFVRDLLLSPEENCGILEWEDREQGIFRVVKSEALAKMWGQRKKNDRMTYEKLSRALRYYYKTGILERVD   82 (107)
T ss_dssp             CCCCSSCCHHHHHHHHHHCTTTCCSCCEEEETTTTEEECSCHHHHHHHHHHHHTCTTCCHHHHHHHHHHHHHHTSEECCS
T ss_pred             CCCCCcEEHHHHHHHHHcCcccCCCcEEeecCCCCEEEecCHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHhcCcEEecc
Confidence            345556778888999999986 568999987 4679999999888775222 1113458899999988873    23443


Q ss_pred             CCceeEe
Q 015923           80 PDRYEFA   86 (398)
Q Consensus        80 ~d~~eF~   86 (398)
                       .+..|.
T Consensus        83 -~rlvY~   88 (107)
T 1wwx_A           83 -RRLVYK   88 (107)
T ss_dssp             -SSSEEE
T ss_pred             -ceEEEE
Confidence             455553

>2dao_A Transcription factor ETV6; ETS domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=86.51  E-value=0.64  Score=39.78  Aligned_cols=79  Identities=16%  Similarity=0.317  Sum_probs=57.2

Q ss_pred             CCCCCCcHHHHHHHhccCCCCCCceEEcC-CCCeEEEecccchhhhhcc-cccCCCChhhHhhhhccc---C-cccccCC
Q 015923            8 NGNSLPPFLSKIYDMVEDPSTNDIVSWSS-SNNSFIVWKVAEFSRDLLP-KYFKHSNFSSFVRQLNTY---G-FRKVDPD   81 (398)
Q Consensus         8 ~~~~~~~Fl~KLy~mled~~~~~iIsWs~-~G~sFvI~d~~~F~~~vLP-~yFkh~nfsSFvRQLN~Y---G-FrKv~~d   81 (398)
                      +..+......=|.++|.|+++.++|+|.. ++.-|.+.|+++.++.-=. +-=+.-||.-.-|-|..|   | -+||...
T Consensus         4 ~~~g~~~LwqFLleLL~d~~~~~~I~W~~~~~g~Fklvdp~~VArlWG~rKnkp~MnYeKLSRaLRyYY~k~ii~Kv~G~   83 (118)
T 2dao_A            4 GSSGCRLLWDYVYQLLSDSRYENFIRWEDKESKIFRIVDPNGLARLWGNHKNRTNMTYEKMSRALRHYYKLNIIRKEPGQ   83 (118)
T ss_dssp             CCCCCCCHHHHHHHHHHCGGGTTTEEEEEGGGTEEEESCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHTSEECCSSS
T ss_pred             ccCcchHHHHHHHHHhCCcccCCceEeeCCCCCeEEEeCHHHHHHHHHhccCCCCcCHHHHHHHHHHHHhcCCEEeccCC
Confidence            44456667778889999999999999988 4568999999888775322 222345899999999888   3 2355555


Q ss_pred             ceeEe
Q 015923           82 RYEFA   86 (398)
Q Consensus        82 ~~eF~   86 (398)
                      +..|.
T Consensus        84 r~vY~   88 (118)
T 2dao_A           84 RLLFR   88 (118)
T ss_dssp             SSEEE
T ss_pred             eEEEE
Confidence            55554

>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}

Probab=86.39  E-value=5  Score=32.15  Aligned_cols=51  Identities=25%  Similarity=0.387  Sum_probs=33.5

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015923          133 LEEEVEILKRDKNVLMQELVRLRQQQQATDRQLHTVGQRVQVMEQRQQQMM  183 (398)
Q Consensus       133 Le~Eve~LKrD~~~L~qEL~~LRQqqq~~e~qLq~L~~RLq~mE~rQqqmm  183 (398)
                      |..|++.||.++..|.+|...++.....+..+.+.|.+.......|-+.|+
T Consensus        25 LqmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~wq~Rl~~LL   75 (81)
T 2jee_A           25 LQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQALL   75 (81)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            455788888888888887777666666666666666655555555544444

>1gvj_A C-ETS-1 protein, P54; transcription, autoinhibition, ETS domain; 1.53A {Homo sapiens} SCOP: a.4.5.21 PDB: 1md0_A 1r36_A 1k78_B 1k79_A* 1k7a_A* 2stt_A* 2stw_A*

Probab=85.68  E-value=0.37  Score=42.69  Aligned_cols=78  Identities=21%  Similarity=0.324  Sum_probs=57.5

Q ss_pred             CCCCCcHHHHHHHhccCCCCCCceEEcCCCCeEEEecccchhhhhcc-cccCCCChhhHhhhhcccCcc----cccCCce
Q 015923            9 GNSLPPFLSKIYDMVEDPSTNDIVSWSSSNNSFIVWKVAEFSRDLLP-KYFKHSNFSSFVRQLNTYGFR----KVDPDRY   83 (398)
Q Consensus         9 ~~~~~~Fl~KLy~mled~~~~~iIsWs~~G~sFvI~d~~~F~~~vLP-~yFkh~nfsSFvRQLN~YGFr----Kv~~d~~   83 (398)
                      +++......=|.++|+|++..++|+|...+.-|.+.|+++.++..=. +-=..-||.-.-|-|..|-=+    ||...+.
T Consensus        36 ~sg~i~LwqFLleLL~d~~~~~~I~Wt~~~~eFklvdpe~VArlWG~rKnkp~MnYeKLSRaLRyYY~k~ii~Kv~Gkrl  115 (146)
T 1gvj_A           36 GSGPIQLWQFLLELLTDKSCQSFISWTGDGWEFKLSDPDEVARRWGKRKNKPKMNYEKLSRGLRYYYDKNIIHKTAGKRY  115 (146)
T ss_dssp             TCCSCCHHHHHHHHHTCGGGTTTSEECSSTTEEECSSHHHHHHHHHHHHTCTTCCHHHHHHHHHHHHHTTSEEECTTSSS
T ss_pred             CCCceeHHHHHHHHhcCcccCCceEeeCCCCEEEeCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhcCcEEecCCCeE
Confidence            34566777788899999999999999999999999999988875322 112244788888998887433    4444455


Q ss_pred             eEe
Q 015923           84 EFA   86 (398)
Q Consensus        84 eF~   86 (398)
                      .|.
T Consensus       116 vY~  118 (146)
T 1gvj_A          116 VYR  118 (146)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            554

>3jtg_A ETS-related transcription factor ELF-3; ELF3, protein-DNA complex, type II TGF-beta receptor, activa alternative splicing, cytoplasm; HET: DNA; 2.20A {Mus musculus} SCOP: a.4.5.21

Probab=83.08  E-value=0.67  Score=38.74  Aligned_cols=73  Identities=15%  Similarity=0.287  Sum_probs=49.9

Q ss_pred             cHHHHHHHhccCCC-CCCceEEcCC-CCeEEEecccchhhhhcc-cccCCCChhhHhhhhcccCc----ccccCCceeEe
Q 015923           14 PFLSKIYDMVEDPS-TNDIVSWSSS-NNSFIVWKVAEFSRDLLP-KYFKHSNFSSFVRQLNTYGF----RKVDPDRYEFA   86 (398)
Q Consensus        14 ~Fl~KLy~mled~~-~~~iIsWs~~-G~sFvI~d~~~F~~~vLP-~yFkh~nfsSFvRQLN~YGF----rKv~~d~~eF~   86 (398)
                      ....=|.++|.|++ ..++|+|... ..-|.+.|+++.++.-=. +-=..-||..+-|-|..|-=    +||...+..|.
T Consensus         6 ~LwqFL~~LL~d~~~~~~~I~W~~~~~g~Fkl~dp~~VArlWG~rKnkp~MnYeKlSRaLRyYy~~~ii~Kv~G~r~vY~   85 (103)
T 3jtg_A            6 HLWEFIRDILIHPELNEGLMKWENRHEGVFKFLRSEAVAQLWGQKKKNSNMTYEKLSRAMRYYYKREILERVDGRRLVYK   85 (103)
T ss_dssp             SHHHHHHHHHTCGGGCSSCEEEEETTTTEEEESSHHHHHHHHHHHTTCTTCCHHHHHHHHHHHHHTTSBCCCTTCTTEEE
T ss_pred             cHHHHHHHHHcCcccCCCccccccCCCceEEecCHHHHHHHHHhccCCCCcCHHHHHHHHHHHHhcCcEEecCCceEEEE
Confidence            44555778899998 5789999985 569999999888774221 11145689999999988722    34444455553

>2nny_A C-ETS-1 protein, P54; protein-DNA complex, transcription/DNA complex; 2.58A {Homo sapiens} PDB: 3ri4_A 3mfk_A 1mdm_B

Probab=82.31  E-value=1.1  Score=40.70  Aligned_cols=77  Identities=19%  Similarity=0.308  Sum_probs=55.9

Q ss_pred             CCCCcHHHHHHHhccCCCCCCceEEcCCCCeEEEecccchhhhhcc-cccCCCChhhHhhhhcccCcc----cccCCcee
Q 015923           10 NSLPPFLSKIYDMVEDPSTNDIVSWSSSNNSFIVWKVAEFSRDLLP-KYFKHSNFSSFVRQLNTYGFR----KVDPDRYE   84 (398)
Q Consensus        10 ~~~~~Fl~KLy~mled~~~~~iIsWs~~G~sFvI~d~~~F~~~vLP-~yFkh~nfsSFvRQLN~YGFr----Kv~~d~~e   84 (398)
                      ++......=|.++|.|++..++|+|...+.-|.+.|+++.++..=. +-=+.-||.-.-|-|..|-=+    ||...+..
T Consensus        62 sg~i~LwqFLleLL~d~~~~~~I~Wt~~~~eFklvdpe~VArlWG~rKnkp~MnYeKLSRaLRyYY~k~ii~Kv~Gkrlv  141 (171)
T 2nny_A           62 SGPIQLWQFLLELLTDKSSQSFISWTGDGWEFKLSDPDEVARRWGKRKNKPKMNYEKLSRGLRYYYDKNIIHKTAGKRYV  141 (171)
T ss_dssp             CSSCCHHHHHHHHHTCTGGGGTCEECSSTTEEECSSHHHHHHHHHHHHTCTTCCHHHHHHHHHGGGTTTSEEECTTSTTE
T ss_pred             CCceeHHHHHHHHhcCcccCCceEeeCCCCEEEeCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhcCcEeecCCCeEE
Confidence            3455666778899999999999999999999999999988875322 112244788888999887544    44444455


Q ss_pred             Ee
Q 015923           85 FA   86 (398)
Q Consensus        85 F~   86 (398)
                      |.
T Consensus       142 Y~  143 (171)
T 2nny_A          142 YR  143 (171)
T ss_dssp             EE
T ss_pred             EE
Confidence            54

>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1

Probab=81.55  E-value=6.8  Score=28.80  Aligned_cols=41  Identities=22%  Similarity=0.251  Sum_probs=32.1

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015923          133 LEEEVEILKRDKNVLMQELVRLRQQQQATDRQLHTVGQRVQ  173 (398)
Q Consensus       133 Le~Eve~LKrD~~~L~qEL~~LRQqqq~~e~qLq~L~~RLq  173 (398)
                      |-.+|+.||+++..|.+||..--.+...++++--+|.+-|.
T Consensus         8 L~~QVe~Lk~ENshLrrEL~dNS~~lskLE~ets~mKevlk   48 (54)
T 1deb_A            8 LLKQVEALKMENSNLRQELEDNSNHLTKLETEASNMKEVLK   48 (54)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhHHHHHHHhhHHHHHHHHhhhhhHHHHHH
Confidence            55688999999999999988888777777777766665443

>1hbx_G ETS-domain protein ELK-4; gene regulation, transcription complex; 3.15A {Homo sapiens} SCOP: a.4.5.21

Probab=80.38  E-value=0.74  Score=41.15  Aligned_cols=75  Identities=17%  Similarity=0.391  Sum_probs=54.6

Q ss_pred             CCcHHHHHHHhccCCCCCCceEEcCCCCeEEEecccchhhhhcc-cccCCCChhhHhhhhcccCcc----cccCCceeEe
Q 015923           12 LPPFLSKIYDMVEDPSTNDIVSWSSSNNSFIVWKVAEFSRDLLP-KYFKHSNFSSFVRQLNTYGFR----KVDPDRYEFA   86 (398)
Q Consensus        12 ~~~Fl~KLy~mled~~~~~iIsWs~~G~sFvI~d~~~F~~~vLP-~yFkh~nfsSFvRQLN~YGFr----Kv~~d~~eF~   86 (398)
                      .-....=|.++|.|++..++|+|...+.-|.+.|+++.++..=. +-=..-||...-|-|..|-=+    ||...+..|.
T Consensus         5 ~i~LWqFLleLL~d~~~~~~I~Wt~~~geFklvdpe~VArLWG~rKnkp~MnYeKLSRALRyYY~k~Ii~KV~GqrlvYk   84 (157)
T 1hbx_G            5 AITLWQFLLQLLQKPQNKHMICWTSNDGQFKLLQAEEVARLWGIRKNKPNMNYDKLSRALRYYYVKNIIKKVNGQKFVYK   84 (157)
T ss_dssp             CCCHHHHTTTSSSCGGGTTTEEECSSSSCEEETTHHHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTSEEECSSCTTEEE
T ss_pred             cccHHHHHHHHhcCcccCCceEEeCCCCEEEecCcHHHHHHHHhccCCCCcCHHHHHHHHHHHHhcCcEEecCCCeEEEe
Confidence            34455667889999999999999998889999999888875322 222355899999999887422    4444555554

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	398
d1hksa_	106	a.4.5.22 (A:) Heat-shock transcription factor {Dro	2e-40
d2htsa_	92	a.4.5.22 (A:) Heat-shock transcription factor {Mil	6e-34

>d1hksa_ a.4.5.22 (A:) Heat-shock transcription factor {Drosophila melanogaster [TaxId: 7227]} Length = 106

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Heat-shock transcription factor
domain: Heat-shock transcription factor
species: Drosophila melanogaster [TaxId: 7227]

 Score =  136 bits (345), Expect = 2e-40
 Identities = 40/106 (37%), Positives = 64/106 (60%), Gaps = 10/106 (9%)

Query: 9   GNSLPPFLSKIYDMVEDPSTNDIVSWSSSNNSFIVWKVAEFSRDLLPKYFKHSNFSSFVR 68
           G+ +P FL+K++ +V+D  TN ++ W+    SF++   A+F+++LLP  +KH+N +SF+R
Sbjct: 1   GSGVPAFLAKLWRLVDDADTNRLICWTKDGQSFVIQNQAQFAKELLPLNYKHNNMASFIR 60

Query: 69  QLNTYGFRKV----------DPDRYEFANEGFLRGQKHLLKSISRR 104
           QLN YGF K+          D D  EF++  F R    LL  I R+
Sbjct: 61  QLNMYGFHKITSIDNGGLRFDRDEIEFSHPFFKRNSPFLLDQIKRK 106

>d2htsa_ a.4.5.22 (A:) Heat-shock transcription factor {Milk yeast (Kluyveromyces lactis) [TaxId: 28985]} Length = 92

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Heat-shock transcription factor
domain: Heat-shock transcription factor
species: Milk yeast (Kluyveromyces lactis) [TaxId: 28985]

 Score =  119 bits (300), Expect = 6e-34
 Identities = 39/87 (44%), Positives = 53/87 (60%), Gaps = 11/87 (12%)

Query: 13 PPFLSKIYDMVEDPSTNDIVSWSSSNNSFIVWKVAEFSRDLLPKYFKHSNFSSFVRQLNT 72
          P F++K++ MV D S    + WS+S  S +V     F +++LPKYFKHSNF+SFVRQLN 
Sbjct: 3  PAFVNKLWSMVNDKSNEKFIHWSTSGESIVVPNRERFVQEVLPKYFKHSNFASFVRQLNM 62

Query: 73 YGFRKV-----------DPDRYEFANE 88
          YG+ KV           +  R+EF NE
Sbjct: 63 YGWHKVQDVKSGSMLSNNDSRWEFENE 89

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	398
d1hksa_	106	Heat-shock transcription factor {Drosophila melano	100.0
d2htsa_	92	Heat-shock transcription factor {Milk yeast (Kluyv	99.96
d1pp7u_	114	39 kda initiator binding protein, IBP39, N-termina	94.73
d1flia_	98	Fli-1 {Human (Homo sapiens) [TaxId: 9606]}	91.47
d1awca_	110	GA binding protein (GABP) alpha {Mouse (Mus muscul	91.44
d1duxc_	86	Elk-1 {Human (Homo sapiens) [TaxId: 9606]}	89.44
d1hbxg_	155	Serum response factor accessory protein 1a, SAP-1	89.4
d1gvja_	142	ETS-1 transcription factor, residues 331-440 {Huma	88.57
d1puee_	88	Transcription factor PU.1, residues 171-259 {Mouse	82.51

>d1hksa_ a.4.5.22 (A:) Heat-shock transcription factor {Drosophila melanogaster [TaxId: 7227]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Heat-shock transcription factor
domain: Heat-shock transcription factor
species: Drosophila melanogaster [TaxId: 7227]

Probab=100.00  E-value=1.8e-36  Score=253.84  Aligned_cols=95  Identities=40%  Similarity=0.827  Sum_probs=90.5

Q ss_pred             CCCCcHHHHHHHhccCCCCCCceEEcCCCCeEEEecccchhhhhcccccCCCChhhHhhhhcccCccccc----------
Q 015923           10 NSLPPFLSKIYDMVEDPSTNDIVSWSSSNNSFIVWKVAEFSRDLLPKYFKHSNFSSFVRQLNTYGFRKVD----------   79 (398)
Q Consensus        10 ~~~~~Fl~KLy~mled~~~~~iIsWs~~G~sFvI~d~~~F~~~vLP~yFkh~nfsSFvRQLN~YGFrKv~----------   79 (398)
                      +++|+|+.|||+||+|+++++||+|+++|++|+|+|+.+|+++|||+||+|+||+||+||||+|||+|+.          
T Consensus         2 ~~vp~F~~KL~~ml~~~~~~~iI~W~~~G~~fiI~d~~~f~~~vLp~~Fk~~~~~SF~RQLn~yGF~kv~~~~~~~~~~~   81 (106)
T d1hksa_           2 SGVPAFLAKLWRLVDDADTNRLICWTKDGQSFVIQNQAQFAKELLPLNYKHNNMASFIRQLNMYGFHKITSIDNGGLRFD   81 (106)
T ss_dssp             TTCCTTHHHHHHHHSSSTTTTTSEESTTTSCEECSCCSTTTTTTSTTTTSCCCHHHHHHHHHHHCCCCSSCSSSCCSSCT
T ss_pred             CCCCcHHHHHHHHHhCcCCCCEEEEcCCCCEEEEcCHHHHHHHHhhhhccccCHHHHHHHHHHCCCEEeeccccccccCC
Confidence            5689999999999999999999999999999999999999999999999999999999999999999983          


Q ss_pred             CCceeEecCCcccccccccccceec
Q 015923           80 PDRYEFANEGFLRGQKHLLKSISRR  104 (398)
Q Consensus        80 ~d~~eF~h~~F~Rg~~~LL~~IkRr  104 (398)
                      ++.|+|+|++|+||+++||..|+||
T Consensus        82 ~~~~~f~h~~F~Rg~p~ll~~IkRr  106 (106)
T d1hksa_          82 RDEIEFSHPFFKRNSPFLLDQIKRK  106 (106)
T ss_dssp             TSTTEECCTTCCSSCTTSTTTCCCC
T ss_pred             CCccEEECccccCCCHHHHhhCcCC
Confidence            4578999999999999999999886

>d2htsa_ a.4.5.22 (A:) Heat-shock transcription factor {Milk yeast (Kluyveromyces lactis) [TaxId: 28985]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Heat-shock transcription factor
domain: Heat-shock transcription factor
species: Milk yeast (Kluyveromyces lactis) [TaxId: 28985]

Probab=99.96  E-value=1.1e-30  Score=214.08  Aligned_cols=78  Identities=50%  Similarity=0.922  Sum_probs=74.2

Q ss_pred             CCcHHHHHHHhccCCCCCCceEEcCCCCeEEEecccchhhhhcccccCCCChhhHhhhhcccCccccc-----------C
Q 015923           12 LPPFLSKIYDMVEDPSTNDIVSWSSSNNSFIVWKVAEFSRDLLPKYFKHSNFSSFVRQLNTYGFRKVD-----------P   80 (398)
Q Consensus        12 ~~~Fl~KLy~mled~~~~~iIsWs~~G~sFvI~d~~~F~~~vLP~yFkh~nfsSFvRQLN~YGFrKv~-----------~   80 (398)
                      .|+|+.|||+||+|+++++||+|+++|++|+|+|+.+|++.|||+||+|+||+||+||||+|||+|+.           +
T Consensus         2 ~P~F~~kL~~~l~~~~~~~iI~W~~~G~~f~I~d~~~f~~~vLp~~F~~~~~~SF~RQLn~yGF~kv~~~~~~~~~~~~~   81 (92)
T d2htsa_           2 RPAFVNKLWSMVNDKSNEKFIHWSTSGESIVVPNRERFVQEVLPKYFKHSNFASFVRQLNMYGWHKVQDVKSGSMLSNND   81 (92)
T ss_dssp             CCHHHHHHHHHHHCGGGTTTCEECTTSSSEEESCHHHHHHHTHHHHCTTCCHHHHHHHHHHTTEECCCCSCTTC----CC
T ss_pred             CCChHHHHHHHHcCcCCCCEEEEeCCCCEEEEeCHHHHHHHHHHHhcCCCCHHHHHHHHHhCCeEEeecCCCCCcccCCC
Confidence            58999999999999999999999999999999999999999999999999999999999999999984           4


Q ss_pred             CceeEecCC
Q 015923           81 DRYEFANEG   89 (398)
Q Consensus        81 d~~eF~h~~   89 (398)
                      +.|||+|+.
T Consensus        82 ~~~eF~h~~   90 (92)
T d2htsa_          82 SRWEFENER   90 (92)
T ss_dssp             CCEEEEESC
T ss_pred             CCEEEecCC
Confidence            689999984

>d1pp7u_ a.4.5.44 (U:) 39 kda initiator binding protein, IBP39, N-terminal domain {Trichomonas vaginalis [TaxId: 5722]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: 39 kda initiator binding protein, IBP39, N-terminal domain
domain: 39 kda initiator binding protein, IBP39, N-terminal domain
species: Trichomonas vaginalis [TaxId: 5722]

Probab=94.73  E-value=0.0052  Score=50.44  Aligned_cols=75  Identities=17%  Similarity=0.352  Sum_probs=54.1

Q ss_pred             CCcHHHHHHHhcc----CCCCCCc--eEEcCCCCeEEEecccchhhhhcccccCCCChhhHhhhhcccCcccccC---Cc
Q 015923           12 LPPFLSKIYDMVE----DPSTNDI--VSWSSSNNSFIVWKVAEFSRDLLPKYFKHSNFSSFVRQLNTYGFRKVDP---DR   82 (398)
Q Consensus        12 ~~~Fl~KLy~mle----d~~~~~i--IsWs~~G~sFvI~d~~~F~~~vLP~yFkh~nfsSFvRQLN~YGFrKv~~---d~   82 (398)
                      -..|..|||.+|.    +|+....  |.|.+++. |.| +...|++.+ -     .+-.|.-.-|..|||.++.+   +.
T Consensus        27 ~~rF~~KL~naL~~t~~~P~~~~~iGv~Wi~d~~-f~V-nk~~fa~lL-g-----iK~ntlN~Nfr~~gF~q~~~d~~~~   98 (114)
T d1pp7u_          27 NSRFPRKLHMLLTYLASNPQLEEEIGLSWISDTE-FKM-KKKNVALVM-G-----IKLNTLNVNLRDLAFEQLQHDKGGW   98 (114)
T ss_dssp             GGSHHHHHHHHHHHHTTCHHHHHHHTEEESSSSC-EEE-CHHHHHHHH-T-----CCHHHHHHHHHHTTCEEEEEEETTE
T ss_pred             cCCchHHHHHHHHHHHhChhhhhccceEEecCCE-EEE-ehHHHHHHH-C-----CChhhhcCcccccCceeeecCCCcc
Confidence            5789999999997    3433222  78999996 888 998998753 2     12345555667799998864   35


Q ss_pred             eeEecCCccccc
Q 015923           83 YEFANEGFLRGQ   94 (398)
Q Consensus        83 ~eF~h~~F~Rg~   94 (398)
                      |.|.+++|.|..
T Consensus        99 ~~w~~~~F~~nS  110 (114)
T d1pp7u_          99 TQWKRSGFTRNS  110 (114)
T ss_dssp             EEEECTTEETTE
T ss_pred             eeeccCCccccc
Confidence            677899998864

>d1flia_ a.4.5.21 (A:) Fli-1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: ets domain
domain: Fli-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.47  E-value=0.043  Score=43.64  Aligned_cols=62  Identities=18%  Similarity=0.338  Sum_probs=46.0

Q ss_pred             CCcHHHHHHHhccCCCCCCceEEcCCCCeEEEecccchhhhhcc-cccCCCChhhHhhhhccc
Q 015923           12 LPPFLSKIYDMVEDPSTNDIVSWSSSNNSFIVWKVAEFSRDLLP-KYFKHSNFSSFVRQLNTY   73 (398)
Q Consensus        12 ~~~Fl~KLy~mled~~~~~iIsWs~~G~sFvI~d~~~F~~~vLP-~yFkh~nfsSFvRQLN~Y   73 (398)
                      ......=|.++|.|+++.++|+|...+.-|.+.|+.+.++.-=- +-=..-||...-|-|..|
T Consensus         5 ~~~Lw~FL~~LL~d~~~~~~I~W~~~~geFkl~~~~~VA~lWG~~Knk~~M~YeklSRaLRyY   67 (98)
T d1flia_           5 QIQLWQFLLELLSDSANASCITWEGTNGEFKMTDPDEVARRWGERKSKPNMNYDKLSRALRYY   67 (98)
T ss_dssp             SCCSHHHHHHHHHTCSSCSSEECTTSSSSCEECCHHHHHHHHHHHTCCTTCSSHHHHHHHHHH
T ss_pred             cccHHHHHHHHhcCcccCCceEEECCCCEEEeCCHHHHHHHHHHhhcCCCccHHHHHHHHHHH
Confidence            34455667889999999999999888888999999888775321 111223788888888776

>d1awca_ a.4.5.21 (A:) GA binding protein (GABP) alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: ets domain
domain: GA binding protein (GABP) alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=91.44  E-value=0.034  Score=45.13  Aligned_cols=56  Identities=18%  Similarity=0.333  Sum_probs=44.1

Q ss_pred             HHHHhccCCCCCCceEEcCCCCeEEEecccchhhhhcc-cccCCCChhhHhhhhccc
Q 015923           18 KIYDMVEDPSTNDIVSWSSSNNSFIVWKVAEFSRDLLP-KYFKHSNFSSFVRQLNTY   73 (398)
Q Consensus        18 KLy~mled~~~~~iIsWs~~G~sFvI~d~~~F~~~vLP-~yFkh~nfsSFvRQLN~Y   73 (398)
                      =|.++|+|++..++|+|...+.-|.+.|+.+.++.-=. +-=..-||...-|-|..|
T Consensus         6 FL~~LL~d~~~~~~I~Wt~~~geFkl~d~e~VA~lWG~~Knk~~M~YeklSRaLRyY   62 (110)
T d1awca_           6 FLLELLTDKDARDCISWVGDEGEFKLNQPELVAQKWGQRKNKPTMNYEKLSRALRYY   62 (110)
T ss_dssp             HHHHHHTCTTTTTTSEECSSSSEEECSSHHHHHHHHHHHHTCTTCCHHHHHHHHHGG
T ss_pred             HHHHHHcCcccCCCcEEECCCCEEEeCCHHHHHHHHHHhhCCCcccHHHHHHHHHHH
Confidence            46788999999999999999999999999988775321 112344788888888887

>d1duxc_ a.4.5.21 (C:) Elk-1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: ets domain
domain: Elk-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.44  E-value=0.037  Score=43.08  Aligned_cols=55  Identities=22%  Similarity=0.413  Sum_probs=42.0

Q ss_pred             HHHhccCCCCCCceEEcC-CCCeEEEecccchhhhhcc-cccCCCChhhHhhhhccc
Q 015923           19 IYDMVEDPSTNDIVSWSS-SNNSFIVWKVAEFSRDLLP-KYFKHSNFSSFVRQLNTY   73 (398)
Q Consensus        19 Ly~mled~~~~~iIsWs~-~G~sFvI~d~~~F~~~vLP-~yFkh~nfsSFvRQLN~Y   73 (398)
                      |.++|.|++..++|+|.. ++.-|.+.|+.+.++.-=. +.=..-||..+-|-|..|
T Consensus         7 L~~LL~d~~~~~~I~Wt~k~~g~Fklv~~~~VA~lWG~~Knk~~MnYeklSRaLRyy   63 (86)
T d1duxc_           7 LLQLLREQGNGHIISWTSRDGGEFKLVDAEEVARLWGLRKNKTNMNYDKLSRALRYY   63 (86)
T ss_dssp             HHHHHHHCSSSSSCEEEETTTTEEECTTHHHHHHHHHHTTTCSCCCHHHHHHHHHHH
T ss_pred             HHHHhcCCCCCCceEeccCCCCEEEecCHHHHHHHHHhccCCCCCCHHHHHHHHHHH
Confidence            566788999999999999 6889999999988875311 111234788888888776

>d1hbxg_ a.4.5.21 (G:) Serum response factor accessory protein 1a, SAP-1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: ets domain
domain: Serum response factor accessory protein 1a, SAP-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.40  E-value=0.07  Score=45.62  Aligned_cols=69  Identities=19%  Similarity=0.439  Sum_probs=52.5

Q ss_pred             HHHHhccCCCCCCceEEcCCCCeEEEecccchhhhhcc-cccCCCChhhHhhhhcccC----cccccCCceeEe
Q 015923           18 KIYDMVEDPSTNDIVSWSSSNNSFIVWKVAEFSRDLLP-KYFKHSNFSSFVRQLNTYG----FRKVDPDRYEFA   86 (398)
Q Consensus        18 KLy~mled~~~~~iIsWs~~G~sFvI~d~~~F~~~vLP-~yFkh~nfsSFvRQLN~YG----FrKv~~d~~eF~   86 (398)
                      =|.++|.|++..++|+|...+.-|.+.|+++.++.-=- |.=..-||..+-|-|..|-    .+||...+..|.
T Consensus         9 FL~~LL~d~~~~~~I~Wt~~~geFkl~~~~~VA~lWG~rKnk~~M~YeklSRaLRyYY~k~il~Kv~g~r~~Yk   82 (155)
T d1hbxg_           9 FLLQLLQKPQNKHMICWTSNDGQFKLLQAEEVARLWGIRKNKPNMNYDKLSRALRYYYVKNIIKKVNGQKFVYK   82 (155)
T ss_dssp             HTTTSSSCGGGTTTEEECSSSSCEEETTHHHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTSEEECSSCTTEEE
T ss_pred             HHHHHHcCccCCCceEEECCCCEEEeCCHHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCCEeeccCceeEEE
Confidence            46678999999999999999999999999999885322 2123458999999998873    345566677775

>d1gvja_ a.4.5.21 (A:) ETS-1 transcription factor, residues 331-440 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: ets domain
domain: ETS-1 transcription factor, residues 331-440
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.57  E-value=0.057  Score=45.52  Aligned_cols=74  Identities=20%  Similarity=0.307  Sum_probs=52.3

Q ss_pred             CcHHHHHHHhccCCCCCCceEEcCCCCeEEEecccchhhhhcc-cccCCCChhhHhhhhcccCc----ccccCCceeEe
Q 015923           13 PPFLSKIYDMVEDPSTNDIVSWSSSNNSFIVWKVAEFSRDLLP-KYFKHSNFSSFVRQLNTYGF----RKVDPDRYEFA   86 (398)
Q Consensus        13 ~~Fl~KLy~mled~~~~~iIsWs~~G~sFvI~d~~~F~~~vLP-~yFkh~nfsSFvRQLN~YGF----rKv~~d~~eF~   86 (398)
                      -..-.=|.++|.|++..++|+|...+..|.+.|+.+.++.-=- +-=..-||...-|-|..|-=    +||...+..|.
T Consensus        40 i~LWqFLleLL~d~~~~~~I~Wt~~~~eFkl~d~e~VA~lWG~~Knk~~MnYeKmSRALRyYY~k~il~Kv~g~rl~Yk  118 (142)
T d1gvja_          40 IQLWQFLLELLTDKSCQSFISWTGDGWEFKLSDPDEVARRWGKRKNKPKMNYEKLSRGLRYYYDKNIIHKTAGKRYVYR  118 (142)
T ss_dssp             CCHHHHHHHHHTCGGGTTTSEECSSTTEEECSSHHHHHHHHHHHHTCTTCCHHHHHHHHHHHHHTTSEEECTTSSSEEE
T ss_pred             eeHHHHHHHHHcCCccCCccEEECCCCeEEeCCHHHHHHHHHhhcCCCCccHHHHhHHHHHHhhcceEEecCCcEEEEe
Confidence            3455667889999999999999999889999999998875311 11123478888888877632    23444455553

>d1puee_ a.4.5.21 (E:) Transcription factor PU.1, residues 171-259 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: ets domain
domain: Transcription factor PU.1, residues 171-259
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=82.51  E-value=0.11  Score=40.41  Aligned_cols=56  Identities=16%  Similarity=0.325  Sum_probs=38.0

Q ss_pred             HHHHhccCCCCCCceEEcCCCC-eEEEe--cccchhhhhc-cc-ccCCCChhhHhhhhccc
Q 015923           18 KIYDMVEDPSTNDIVSWSSSNN-SFIVW--KVAEFSRDLL-PK-YFKHSNFSSFVRQLNTY   73 (398)
Q Consensus        18 KLy~mled~~~~~iIsWs~~G~-sFvI~--d~~~F~~~vL-P~-yFkh~nfsSFvRQLN~Y   73 (398)
                      =|.++|.||++.++|+|...+. .|-+.  ++.+.++.-= -+ .=..=||...-|-|..|
T Consensus         7 FL~~LL~d~~~~~~I~Wt~~~~g~F~fv~~~~e~VA~lWG~~K~Nr~~MnYeklSRaLRyY   67 (88)
T d1puee_           7 FLLDLLRSGDMKDSIWWVDKDKGTFQFSSKHKEALAHRWGIQKGNRKKMTYEKMARALRNY   67 (88)
T ss_dssp             HHHHHHHHTCCTTTEEEEETTTTEEEECTTTHHHHHHHHHHHHTCSSCCCHHHHHHHHHHH
T ss_pred             HHHHHHcCccCCCceEeeCCCCceEEEEeCCHHHHHHHHHhhcCCCCCCcHHHHHHHHHHH
Confidence            3678889999999999987665 35554  4666666321 01 11234899999988876