Citrus Sinensis ID: 015929

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------40
Protein Sequence
MSLSLGLTLTPFTSPPPKTHLKIPVFRPKTPLAISSSPPSFKNLQITRCVNENSQLLPVTEAKPRWEYLLSTAASLYPLYVTVGGVIACLKPSAFGWFVQRGPASYSLSLGLIMLAMGLTLELKDLISLFMQRPLSILFGCAAQYTIMPTSGVIVSKFLGLPPALSVGLILLSCCPGGTASNVVTLIARGDVPLSIVMTMCTTLGAVLFTPLLTKILAGTYVPVDAVKLSISTLQSAFPAAVKVVTPFTPLFAVLMSSLLACSVFSENLVRLKSSVVGAALTSDLSLISRIKSILSGELGVIILSVLLLHFAGFFVGYLSAAICGFKEPQRRAISIEVGMQNSSLGVVLATAHFTSSMVALPPAMSAVIMNIMGSTLGFFWRYIDPSDSKTSPKTVDK
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHcccccHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHcccccccHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHcccccEEEEccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccEEEEEEEccccHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccEEEEEcccccccccccccccccccccccccccccccccccccEEccEcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccHccccccccccHHHHHHHHHHHHccccccHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHEEEEEEEEccccccHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHcccEEEEEEccccHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHccc
Coil and Loop (DISEMBL)
mslslgltltpftspppkthlkipvfrpktplaisssppsfknlqitrcvnensqllpvteakpRWEYLLSTAASLYPLYVTVGGVIaclkpsafgwfvqrgpasysLSLGLIMLAMGLTLELKDLISLFMqrplsilfgcaaqytimptsgVIVSkflglppalSVGLILlsccpggtasnVVTLIARGDVPLSIVMTMCTTLGAVLFTPLLTKIlagtyvpvdAVKLSISTLQSAFpaavkvvtpFTPLFAVLMSSLLACSVFSENLVRLKSSVVGAALTSDLSLISRIKSILSGELGVIILSVLLLHFAGFFVGYLSAAicgfkepqrRAISIEVGMQNSSLGVVLATAHFtssmvalppAMSAVIMNIMGSTLGFFwryidpsdsktspktvdk
Flexible Loop (DISEMBL)
mslslgltltpftspppkthlKIPVFRPKTPLAISSSPPSFKNLQITRCVNENSQLLPVTEAKPRWEYLLSTAASLYPLYVTVGGVIACLKPSAFGWFVQRGPASYSLSLGLIMLAMGLTLELKDLISLFMQRPLSILFGCAAQYTIMPTSGVIVSKFLGLPPALSVGLILLSCCPGGTASNVVTLIARGDVPLSIVMTMCTTLGAVLFTPLLTKILAGTYVPVDAVKLSISTLQSAFPAAVKVVTPFTPLFAVLMSSLLACSVFSENLVRLKSSVVGAALTSDLSLISRIKSILSGELGVIILSVLLLHFAGFFVGYLSAAICGFKEPQRRAISIEVGMQNSSLGVVLATAHFTSSMVALPPAMSAVIMNIMGSTLGFFWRyidpsdsktspktvdk
Low Complexity Region (SEG)
MSLSLGLTLTPFTSPPPKTHLKIPVFRPKTPLAISSSPPSFKNLQITRCVNENSQLLPVTEAKPRWEYLLSTAASLYPLYVTVGGVIACLKPSAFGWFVQRGPASYSLSLGLIMLAMGLTLELKDLISLFMQRPLSILFGCAAQYTIMPTSGVIVSKFLGLPPALSVGLILLSCCPGGTASNVVTLIARGDVPLSIVMTMCTTLGAVLFTPLLTKILAGTYVPVDAVKLSISTLQSAFPAAVKVVTPFTPLFAVLMSSLLACSVFSENLVRLKSSVVGAALTsdlslisriksilsGELGVIILSVLLLHFAGFFVGYLSAAICGFKEPQRRAISIEVGMQNSSLGVVLATAHFTSSMVALPPAMSAVIMNIMGSTLGFFWRYIDPSDSKTSPKTVDK
Disordered region (IsUnstruct)
******************************************NLQITRCVNENSQLLPVTEAKPRWEYLLSTAASLYPLYVTVGGVIACLKPSAFGWFVQRGPASYSLSLGLIMLAMGLTLELKDLISLFMQRPLSILFGCAAQYTIMPTSGVIVSKFLGLPPALSVGLILLSCCPGGTASNVVTLIARGDVPLSIVMTMCTTLGAVLFTPLLTKILAGTYVPVDAVKLSISTLQSAFPAAVKVVTPFTPLFAVLMSSLLACSVFSENLVRLKSSVVGAALTSDLSLISRIKSILSGELGVIILSVLLLHFAGFFVGYLSAAICGFKEPQRRAISIEVGMQNSSLGVVLATAHFTSSMVALPPAMSAVIMNIMGSTLGFFWRYI**************
Disordered Region (DISOPRED)
*******************************************************************YLLSTAASLYPLYVTVGGVIACLKPSAFGWFVQRGPASYSLSLGLIMLAMGLTLELKDLISLFMQRPLSILFGCAAQYTIMPTSGVIVSKFLGLPPALSVGLILLSCCPGGTASNVVTLIARGDVPLSIVMTMCTTLGAVLFTPLLTKILAGTYVPVDAVKLSISTLQSAFPAAVKVVTPFTPLFAVLMSSLLACSVFSENLVRLKSSVVGAALTSDLSLISRIKSILSGELGVIILSVLLLHFAGFFVGYLSAAICGFKEPQRRAISIEVGMQNSSLGVVLATAHFTSSMVALPPAMSAVIMNIMGSTLGFFWR****************
Disordered Region (DISEMBL)
MSLSLGLTLTPFTSPPPKTHLKIPVFRPKTPLAISSSPPSFKNLQITRCVNENSQLLPVTEAKPRWEYLLSTAASLYPLYVTVGGVIACLKPSAFGWFVQRGPASYSLSLGLIMLAMGLTLELKDLISLFMQRPLSILFGCAAQYTIMPTSGVIVSKFLGLPPALSVGLILLSCCPGGTASNVVTLIARGDVPLSIVMTMCTTLGAVLFTPLLTKILAGTYVPVDAVKLSISTLQSAFPAAVKVVTPFTPLFAVLMSSLLACSVFSENLVRLKSSVVGAALTSDLSLISRIKSILSGELGVIILSVLLLHFAGFFVGYLSAAICGFKEPQRRAISIEVGMQNSSLGVVLATAHFTSSMVALPPAMSAVIMNIMGSTLGFFWRYIDPS***********
Disordered Region (DISPRO)
*SLSLGLTLTPFTSPPPKTHLKIPVFRPKTPLAISSSPPSFKNLQITRCVNENSQLLP**EAKPRWEYLLSTAASLYPLYVTVGGVIACLKPSAFGWFVQRGPASYSLSLGLIMLAMGLTLELKDLISLFMQRPLSILFGCAAQYTIMPTSGVIVSKFLGLPPALSVGLILLSCCPGGTASNVVTLIARGDVPLSIVMTMCTTLGAVLFTPLLTKILAGTYVPVDAVKLSISTLQSAFPAAVKVVTPFTPLFAVLMSSLLACSVFSENLVRLKSSVVGAALTSDLSLISRIKSILSGELGVIILSVLLLHFAGFFVGYLSAAICGFKEPQRRAISIEVGMQNSSLGVVLATAHFTSSMVALPPAMSAVIMNIMGSTLGFFWRYID*************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSLSLGLTLTPFTSPPPKTHLKIPVFRPKTPLAISSSPPSFKNLQITRCVNENSQLLPVTEAKPRWEYLLSTAASLYPLYVTVGGVIACLKPSAFGWFVQRGPASYSLSLGLIMLAMGLTLELKDLISLFMQRPLSILFGCAAQYTIMPTSGVIVSKFLGLPPALSVGLILLSCCPGGTASNVVTLIARGDVPLSIVMTMCTTLGAVLFTPLLTKILAGTYVPVDAVKLSISTLQSAFPAAVKVVTPFTPLFAVLMSSLLACSVFSENLVRLKSSVVGAALTSDLSLISRIKSILSGELGVIILSVLLLHFAGFFVGYLSAAICGFKEPQRRAISIEVGMQNSSLGVVLATAHFTSSMVALPPAMSAVIMNIMGSTLGFFWRYIDPSDSKTSPKTVDK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	398	2.2.26 [Sep-21-2011]
Q93YR2	401	Probable sodium/metabolit	yes	no	0.793	0.788	0.386	6e-54
Q5VRB2	419	Probable sodium/metabolit	no	no	0.761	0.723	0.386	5e-52
Q1EBV7	409	Sodium/pyruvate cotranspo	no	no	0.758	0.738	0.383	3e-50
Q7XVB3	406	Probable sodium/metabolit	no	no	0.733	0.719	0.408	2e-47
O34524	321	Uncharacterized sodium-de	yes	no	0.713	0.884	0.364	2e-41
Q6K739	423	Probable sodium/metabolit	no	no	0.663	0.624	0.343	3e-34
Q8VYY4	409	Probable sodium/metabolit	no	no	0.736	0.716	0.322	1e-32
Q8RXE8	431	Probable sodium/metabolit	no	no	0.706	0.651	0.325	8e-31
F4JPW1	407	Probable sodium/metabolit	no	no	0.721	0.705	0.313	8e-29
Q650U0	401	Probable sodium/metabolit	no	no	0.771	0.765	0.325	9e-28

>sp|Q93YR2|BASS1_ARATH Probable sodium/metabolite cotransporter BASS1, chloroplastic OS=Arabidopsis thaliana GN=BASS1 PE=2 SV=1

 Score =  211 bits (538), Expect = 6e-54,   Method: Compositional matrix adjust.
 Identities = 142/367 (38%), Positives = 201/367 (54%), Gaps = 51/367 (13%)

Query: 48  RCVNENSQLLPVTEAKP--RW-EYLLSTAASLYPLYVTVGGVIACLKPSAFGWFVQRGPA 104
           RC   +S  LP  + K    W E++    ++ +P++V++G ++  ++PS F W     P 
Sbjct: 70  RC-GISSNDLPTEKKKSFGEWVEFVGEAVSTAFPIWVSLGCLLGLMRPSTFNWVT---PN 125

Query: 105 SYSLSLGLIMLAMGLTLELKDLISLFMQRPLSILFGCAAQYTIMPTSGVIVSKFLGLPPA 164
              + L + ML MG+TL L DL    +  P  +  G   QY++MP S   VSK L LPP 
Sbjct: 126 WTIVGLTITMLGMGMTLTLDDLRGA-LSMPKELFAGFLLQYSVMPLSAFFVSKLLNLPPH 184

Query: 165 LSVGLILLSCCPGGTASNVVTLIARGDVPLSIVMTMCTTLGAVLFTPLLTKILAGTYVPV 224
            + GLIL+ CCPGGTASN+VT IARG+V LS++MT  +T+ AV+ TPLLT  LA  Y+ V
Sbjct: 185 YAAGLILVGCCPGGTASNIVTYIARGNVALSVLMTAASTVSAVIMTPLLTAKLAKQYITV 244

Query: 225 DAVKLSISTLQ-------------SAFPAAVKVVTPFTPLFAVLMSSLLACSVFSENLVR 271
           DA+ L +STLQ               F   VK V+P  P  AV   ++L           
Sbjct: 245 DALGLLMSTLQVVLLPVLAGAFLNQYFKKLVKFVSPVMPPIAVGTVAILC---------- 294

Query: 272 LKSSVVGAALTSDLSLISRIKSILSGELGVIILSVLLLHFAGFFVGYLSAAICGFKEPQR 331
                 G A+  + S I     ++SG+   ++L+  LLH +GF  GYL + I G      
Sbjct: 295 ------GYAIGQNASAI-----LMSGK--QVVLASCLLHISGFLFGYLFSRILGIDVASS 341

Query: 332 RAISIEVGMQNSSLGVVLATAHFTSSMVALPPAMSAVIMNIMGSTLGFFWRYIDPSDSKT 391
           R ISIEVGMQNS LGVVLAT HF + + A+P A+S+V  +I+GS L   WR       ++
Sbjct: 342 RTISIEVGMQNSVLGVVLATQHFGNPLTAVPCAVSSVCHSILGSVLAGIWR-------RS 394

Query: 392 SPKTVDK 398
           +PK ++ 
Sbjct: 395 APKQLED 401

May function as sodium-coupled metabolite transporter across the chloroplast envelope.
Arabidopsis thaliana (taxid: 3702)

>sp|Q5VRB2|BASS2_ORYSJ Probable sodium/metabolite cotransporter BASS2, chloroplastic OS=Oryza sativa subsp. japonica GN=BASS2 PE=2 SV=1

 Score =  205 bits (521), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 133/344 (38%), Positives = 191/344 (55%), Gaps = 41/344 (11%)

Query: 65  RWEYLLSTAASLYPLYVTVGGVIACLKPSAFGWFVQRGPASYSLSLGLIMLAMGLTLELK 124
           ++E ++    +L+P++V +G +I   KPS   W        +++ LG +ML+MGLTL  +
Sbjct: 102 QYEKIVELLTTLFPVWVILGTIIGIYKPSMVTWLETD---LFTVGLGFLMLSMGLTLTFE 158

Query: 125 DLISLFMQRPLSILFGCAAQYTIMPTSGVIVSKFLGLPPALSVGLILLSCCPGGTASNVV 184
           D     M+ P ++  G  AQY I P  G  ++  L L   L+ GLIL+SCCPGG ASNV 
Sbjct: 159 DFRRC-MRNPWTVGVGFLAQYLIKPMLGFAIAMTLKLSAPLATGLILVSCCPGGQASNVA 217

Query: 185 TLIARGDVPLSIVMTMCTTLGAVLFTPLLTKILAGTYVPVDAVKLSISTLQ--------- 235
           T I++G+V LS++MT C+T+GA++ TPLLTK+LAG  VPVDA  L+IST Q         
Sbjct: 218 TYISKGNVALSVLMTTCSTIGAIVMTPLLTKLLAGQLVPVDAAGLAISTFQVVLLPTIVG 277

Query: 236 ----SAFPAAVKVVTPFTPLFAVLMSSLLACSVFSENLVRLKSSVVGAALTSDLSLISRI 291
                 FP   + +   TPL  VL+++LL  S                        I ++
Sbjct: 278 VLAHEYFPKFTERIISITPLIGVLLTTLLCASP-----------------------IGQV 314

Query: 292 KSILSGELGVIILSVLLLHFAGFFVGYLSAAICGFKEPQRRAISIEVGMQNSSLGVVLAT 351
             +L  + G +I+ V LLH A F +GY  + +  F E   R ISIE GMQ+S+LG +LA 
Sbjct: 315 SEVLKAQGGQLIIPVALLHVAAFALGYWLSKVSSFGESTSRTISIECGMQSSALGFLLAQ 374

Query: 352 AHFTSSMVALPPAMSAVIMNIMGSTLGFFWRYID-PSDSKTSPK 394
            HFT+ +VA+P A+S V M + GS L  FWR    P++ K   K
Sbjct: 375 KHFTNPLVAVPSAVSVVCMALGGSALAVFWRNRGLPANDKDDFK 418

May function as sodium-coupled metabolite transporter across the chloroplast envelope.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q1EBV7|BASS2_ARATH Sodium/pyruvate cotransporter BASS2, chloroplastic OS=Arabidopsis thaliana GN=BASS2 PE=2 SV=1

 Score =  199 bits (506), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 132/344 (38%), Positives = 190/344 (55%), Gaps = 42/344 (12%)

Query: 65  RWEYLLSTAASLYPLYVTVGGVIACLKPSAFGWFVQRGPASYSLSLGLIMLAMGLTLELK 124
           ++E ++    +L+PL+V +G ++   KPS   W        ++L LG +ML+MGLTL  +
Sbjct: 93  QYEKIIELLTTLFPLWVILGTLVGIFKPSLVTWLETD---LFTLGLGFLMLSMGLTLTFE 149

Query: 125 DLISLFMQRPLSILFGCAAQYTIMPTSGVIVSKFLGLPPALSVGLILLSCCPGGTASNVV 184
           D     ++ P ++  G  AQY I P  G +++  L L   L+ GLIL+SCCPGG ASNV 
Sbjct: 150 DFRRC-LRNPWTVGVGFLAQYMIKPILGFLIAMTLKLSAPLATGLILVSCCPGGQASNVA 208

Query: 185 TLIARGDVPLSIVMTMCTTLGAVLFTPLLTKILAGTYVPVDAVKLSISTLQ--------- 235
           T I++G+V LS++MT C+T+GA++ TPLLTK+LAG  VPVDA  L++ST Q         
Sbjct: 209 TYISKGNVALSVLMTTCSTIGAIIMTPLLTKLLAGQLVPVDAAGLALSTFQVVLVPTIIG 268

Query: 236 ----SAFPAAVKVVTPFTPLFAVLMSSLLACSVFSENLVRLKSSVVGAALTSDLSLISRI 291
                 FP     +   TPL  V++++LL  S                        I ++
Sbjct: 269 VLANEFFPKFTSKIITVTPLIGVILTTLLCASP-----------------------IGQV 305

Query: 292 KSILSGELGVIILSVLLLHFAGFFVGYLSAAICGFKEPQRRAISIEVGMQNSSLGVVLAT 351
             +L  +   +IL V LLH A F +GY  +    F E   R ISIE GMQ+S+LG +LA 
Sbjct: 306 ADVLKTQGAQLILPVALLHAAAFAIGYWISKF-SFGESTSRTISIECGMQSSALGFLLAQ 364

Query: 352 AHFTSSMVALPPAMSAVIMNIMGSTLGFFWRYID-PSDSKTSPK 394
            HFT+ +VA+P A+S V M + GS L  FWR +  P+D K   K
Sbjct: 365 KHFTNPLVAVPSAVSVVCMALGGSGLAVFWRNLPIPADDKDDFK 408

Sodium-coupled metabolite transporter that plays a crucial role in pyruvate transport across the chloroplast envelope. Is required for sodium-coupled pyruvate import into plastids.

Arabidopsis thaliana (taxid: 3702)

>sp|Q7XVB3|BASS1_ORYSJ Probable sodium/metabolite cotransporter BASS1, chloroplastic OS=Oryza sativa subsp. japonica GN=BASS1 PE=2 SV=2

 Score =  190 bits (482), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 130/318 (40%), Positives = 182/318 (57%), Gaps = 26/318 (8%)

Query: 77  YPLYVTVGGVIACLKPSAFGWFVQRGPASYSLSLGLIMLAMGLTLELKDLISLFMQRPLS 136
           +P++V     +A  +P AF W     P +  + +   ML MG+TL L DL +  +  P  
Sbjct: 106 FPVWVASACAVALWRPPAFLWV---SPMAQIVGISFTMLGMGMTLTLDDLKTALLM-PKE 161

Query: 137 ILFGCAAQYTIMPTSGVIVSKFLGLPPALSVGLILLSCCPGGTASNVVTLIARGDVPLSI 196
           +  G   QY++MP SG ++SK L LP   + GLIL+SCCPGGTASN+VT +ARG+V LS+
Sbjct: 162 LASGFLLQYSVMPLSGFLISKLLNLPSYYAAGLILVSCCPGGTASNIVTYLARGNVALSV 221

Query: 197 VMTMCTTLGAVLFTPLLTKILAGTYVPVDAVKLSISTLQSAFPAAVKVVTPFTPLFAVLM 256
           +MT  +T  A   TPLLT  LAG YV VD + L +ST Q        V+ P      VL+
Sbjct: 222 LMTAASTFAAAFLTPLLTSKLAGQYVAVDPMGLFVSTSQ-------VVLAP------VLL 268

Query: 257 SSLLACSVFSENLVRLKS------SVVGAALTSDLSLISRIKSILSGELGVIILSVLLLH 310
            +LL  + +   LV+L S      +V   A+    ++     +ILS  L V ++SV  LH
Sbjct: 269 GALL--NQYCNGLVQLVSPLMPFIAVATVAVLCGNAIAQNASAILSSGLQV-VMSVCWLH 325

Query: 311 FAGFFVGYLSAAICGFKEPQRRAISIEVGMQNSSLGVVLATAHFTSSMVALPPAMSAVIM 370
            +GFF GY+ +   G      R ISIEVGMQNS LGVVLA+ HF + + A+P A+S+V  
Sbjct: 326 ASGFFFGYVLSRTIGIDISSSRTISIEVGMQNSVLGVVLASKHFGNPLTAVPCAVSSVCH 385

Query: 371 NIMGSTLGFFWRYIDPSD 388
           ++ GS L   WR + P+D
Sbjct: 386 SVYGSLLAGIWRSLPPND 403

May function as sodium-coupled metabolite transporter across the chloroplast envelope.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|O34524|YOCS_BACSU Uncharacterized sodium-dependent transporter YocS OS=Bacillus subtilis (strain 168) GN=yocS PE=3 SV=1

 Score =  170 bits (430), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 116/318 (36%), Positives = 182/318 (57%), Gaps = 34/318 (10%)

Query: 73  AASLYPLYVTVGGVIACLKPSAFGWFVQRGPASY-SLSLGLIMLAMGLTLELKDLISLFM 131
           A   + ++V V  V+    PS F W      +SY ++ LG+IM  MGLTL+  D   L +
Sbjct: 11  AGQTFGIWVIVFAVLGFSFPSLFTWI-----SSYITIFLGIIMFGMGLTLQADDFKEL-V 64

Query: 132 QRPLSILFGCAAQYTIMPTSGVIVSKFLGLPPALSVGLILLSCCPGGTASNVVTLIARGD 191
           ++P  ++ G  AQYTIMP     ++  L LP  ++VG+IL+ CCPGGTASNV+T +A+G+
Sbjct: 65  RKPWQVIIGVIAQYTIMPLVAFGLAFGLHLPAEIAVGVILVGCCPGGTASNVMTFLAKGN 124

Query: 192 VPLSIVMTMCTTLGAVLFTPLLTKILAGTYVPVDAVKLSISTLQSA-FPAAVKVVTPFTP 250
             LS+ +T  +TL A + TPLL  + A  ++PV    L IS LQ+  FP           
Sbjct: 125 TALSVAVTTISTLLAPVVTPLLIMLFAKEWLPVSPGSLFISILQAVLFP----------- 173

Query: 251 LFAVLMSSLLACSVFSENLVRLKSSVVGAALTSDLSLISRIKSILSG------ELGVIIL 304
               +++ L+    F + + +   +V    L S + +++ + +++SG      + G++I 
Sbjct: 174 ----IIAGLIVKMFFRKQVAK---AVHALPLVSVIGIVAIVSAVVSGNRENLLQSGLLIF 226

Query: 305 SVLLLHFA-GFFVGYLSAAICGFKEPQRRAISIEVGMQNSSLGVVLATAHFTSSMVALPP 363
           SV++LH   G+ +G+L A +     P ++AI+IEVGMQNS LG  LATAHF S + A+P 
Sbjct: 227 SVVILHNGIGYLLGFLCAKLLKMDYPSQKAIAIEVGMQNSGLGAALATAHF-SPLSAVPS 285

Query: 364 AMSAVIMNIMGSTLGFFW 381
           A+ +V  N+ GS L  +W
Sbjct: 286 AIFSVWHNLSGSMLATYW 303

Bacillus subtilis (strain 168) (taxid: 224308)

>sp|Q6K739|BASS3_ORYSJ Probable sodium/metabolite cotransporter BASS3, chloroplastic OS=Oryza sativa subsp. japonica GN=BASS3 PE=2 SV=1

 Score =  146 bits (368), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 105/306 (34%), Positives = 161/306 (52%), Gaps = 42/306 (13%)

Query: 91  KPSAFGWFVQRGPASYSLSLGLIMLAMGLTLELKDLISLFMQRPLSILFGCAAQYTIMPT 150
            P+ F W  +     Y+ +LG IML++G+ L + D  +L  +RP+ +  G  AQY + P 
Sbjct: 122 NPATFSWVSKE---YYAPALGGIMLSIGIKLSIDDF-ALAFKRPVPLTIGYMAQYIVKPL 177

Query: 151 SGVIVSKFLGLPPALSVGLILLSCCPGGTASNVVTLIARGDVPLSIVMTMCTTLGAVLFT 210
            GV++++  G+P A   G +L  C  G   S+  + +++GDV LSI++T C+T+ +V+ T
Sbjct: 178 MGVLIARAFGMPSAFFAGFVLTCCVSGAQLSSYASFLSKGDVALSILLTSCSTISSVVVT 237

Query: 211 PLLTKILAGTYVPVDAVKLSISTLQSAF-------------PAAVKVVTPFTPLFAVLMS 257
           P+LT +L G+ VPVD + ++ S LQ                 A V V+ P  P  A+L +
Sbjct: 238 PVLTGLLIGSVVPVDGIAMAKSILQVVLVPVTLGLLLNTYAKAVVNVIQPVMPFVAMLCT 297

Query: 258 SLLACSVFSENLVRLKSSVVGAALTSDLSLISRIKSILSGELGVIILSVLLLHFAGFFVG 317
           SL                 +G+ L      I+R K ILS E  +++L ++  H A F VG
Sbjct: 298 SL----------------CIGSPLA-----INRSK-ILSSEGFLLLLPIVTFHIAAFIVG 335

Query: 318 YLSAAICGFK--EPQRRAISIEVGMQNSSLGVVLATAHFTSSMVALPPAMSAVIMNIMGS 375
           Y  + +   +  EP  R IS+  GMQ+S+L  +LAT  F  S  A+P A S VIM I G 
Sbjct: 336 YWISKLPMLRQEEPVCRTISVCTGMQSSTLAGLLAT-QFLGSSQAVPAACSVVIMAIFGL 394

Query: 376 TLGFFW 381
           TL  +W
Sbjct: 395 TLASYW 400

May function as sodium-coupled metabolite transporter across the chloroplast envelope.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q8VYY4|BASS6_ARATH Probable sodium/metabolite cotransporter BASS6, chloroplastic OS=Arabidopsis thaliana GN=BASS6 PE=2 SV=1

 Score =  140 bits (354), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 110/341 (32%), Positives = 157/341 (46%), Gaps = 48/341 (14%)

Query: 63  KPRWEYLLSTAASLYPLYVTVGGVIACLKPSAFGWFVQRGPASYSLSLGLIMLAMGLTLE 122
           KP     +  A S+ P  V    ++A + P +F WF  R    +  +LG +M A+G+   
Sbjct: 87  KPSIVDRMKKANSILPHVVLASTILALIYPPSFTWFTSR---YFVPALGFLMFAVGINSN 143

Query: 123 LKDLISLFMQRPLSILFGCAAQYTIMPTSGVIVS----KFLGLPPALSVGLILLSCCPGG 178
            KD +  F +RP +IL G   QY + P  G I          LP  +  G++L+SC  G 
Sbjct: 144 EKDFLEAF-KRPKAILLGYVGQYLVKPVLGFIFGLAAVSLFQLPTPIGAGIMLVSCVSGA 202

Query: 179 TASNVVTLIARGDV-PLSIVMTMCTTLGAVLFTPLLTKILAGTYVPVDAVKLSISTLQ-- 235
             SN  T +    + PLSIVMT  +T  AVL TP+L+ +L G  +PVD   +  S LQ  
Sbjct: 203 QLSNYATFLTDPALAPLSIVMTSLSTATAVLVTPMLSLLLIGKKLPVDVKGMISSILQVV 262

Query: 236 -----------SAFPAAVKVVTPFTPLFAVLMSSLLACSVFSENLVRLKSSVVGAALTSD 284
                        FP     + PF P+ +VL +   AC              VGA L  +
Sbjct: 263 IAPIAAGLLLNKLFPKVSNAIRPFLPILSVLDT---AC-------------CVGAPLALN 306

Query: 285 LSLISRIKSILSGELGVIILSVLLLHFAGFFVGYLSAAICGFKEPQ----RRAISIEVGM 340
                 I S++S     I+L V + H + F  GY          P     +R +S E GM
Sbjct: 307 ------INSVMSPFGATILLLVTMFHLSAFLAGYFLTGSVFRNAPDAKAMQRTLSYETGM 360

Query: 341 QNSSLGVVLATAHFTSSMVALPPAMSAVIMNIMGSTLGFFW 381
           Q+S L + LAT  F   +V +PPA+S V+M++MG TL   W
Sbjct: 361 QSSLLALALATKFFQDPLVGIPPAISTVVMSLMGFTLVLIW 401

May function as sodium-coupled metabolite transporter across the chloroplast envelope.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8RXE8|BASS3_ARATH Probable sodium/metabolite cotransporter BASS3, chloroplastic OS=Arabidopsis thaliana GN=BASS3 PE=2 SV=1

 Score =  135 bits (339), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 105/323 (32%), Positives = 164/323 (50%), Gaps = 42/323 (13%)

Query: 74  ASLYPLYVTVGGVIACLKPSAFGWFVQRGPASYSLSLGLIMLAMGLTLELKDLISLFMQR 133
           ++L P  V +  V A   P +F W  +     Y+ +LG IML++G+ L + D  +L  +R
Sbjct: 112 SALLPFVVALTAVAALSYPPSFTWVSKD---LYAPALGGIMLSIGIQLSVDDF-ALAFKR 167

Query: 134 PLSILFGCAAQYTIMPTSGVIVSKFLGLPPALSVGLILLSCCPGGTASNVVTLIARGDVP 193
           P+ +  G  AQY + P  GV+V+   G+P     G IL  C  G   S+  + +++ DV 
Sbjct: 168 PVPLSVGFVAQYVLKPLLGVLVANAFGMPRTFYAGFILTCCVAGAQLSSYASSLSKADVA 227

Query: 194 LSIVMTMCTTLGAVLFTPLLTKILAGTYVPVDAVKLSISTLQSAF-------------PA 240
           +SI++T  TT+ +V+FTPLL+ +L G+ VPVDAV +S S LQ                  
Sbjct: 228 MSILLTSSTTIASVIFTPLLSGLLIGSVVPVDAVAMSKSILQVVLVPITLGLVLNTYAKP 287

Query: 241 AVKVVTPFTPLFAVLMSSLLACSVFSENLVRLKSSVVGAALTSDLSLISRIKSILSGELG 300
            V ++ P  P  A++ +SL                 +G+ L+ + S       ILS E  
Sbjct: 288 VVTLLQPVMPFVAMVCTSL----------------CIGSPLSINRS------QILSAEGL 325

Query: 301 VIILSVLLLHFAGFFVGYLSAAICGFKEPQR--RAISIEVGMQNSSLGVVLATAHFTSSM 358
            +I+ ++  H   F +GY  + I G ++ +   R IS+  GMQ+S+L  +LA+  F  S 
Sbjct: 326 GLIVPIVTFHAVAFALGYWFSKIPGLRQEEEVSRTISLCTGMQSSTLAGLLAS-QFLGSS 384

Query: 359 VALPPAMSAVIMNIMGSTLGFFW 381
            A+P A S V+M IMG  L  FW
Sbjct: 385 QAVPAACSVVVMAIMGLCLASFW 407

May function as sodium-coupled metabolite transporter across the chloroplast envelope.

Arabidopsis thaliana (taxid: 3702)

>sp|F4JPW1|BASS5_ARATH Probable sodium/metabolite cotransporter BASS5, chloroplastic OS=Arabidopsis thaliana GN=BASS5 PE=2 SV=1

 Score =  128 bits (321), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 105/335 (31%), Positives = 152/335 (45%), Gaps = 48/335 (14%)

Query: 70  LSTAASLYPLYVTVGGVIACLKPSAFGWFVQRGPASYSLSLGLIMLAMGLTLELKDLISL 129
           L  A S  P  + +  ++A + P +F WF    P  +   LG +M A+G+    +D +  
Sbjct: 95  LKQAYSFIPHGILLSTILALVYPPSFTWF---KPRYFVPGLGFMMFAVGINSNERDFLEA 151

Query: 130 FMQRPLSILFGCAAQYTIMP----TSGVIVSKFLGLPPALSVGLILLSCCPGGTASNVVT 185
            ++RP +I  G   QY I P      GVI      LP ++  G++L+SC  G   SN  T
Sbjct: 152 -LKRPDAIFAGYIGQYLIKPLLGYIFGVIAVSLFNLPTSIGAGIMLVSCVSGAQLSNYTT 210

Query: 186 LIARGDVP-LSIVMTMCTTLGAVLFTPLLTKILAGTYVPVDAVKLSISTLQ--------- 235
            +    +  LSIVMT  +T  AVL TP+L+ +L G  +PVD   +  S LQ         
Sbjct: 211 FLTDPSLAALSIVMTSISTATAVLVTPMLSLLLIGKKLPVDVFGMISSILQVVITPIAAG 270

Query: 236 ----SAFPAAVKVVTPFTPLFAVLMSSLLACSVFSENLVRLKSSVVGAALTSDLSLISRI 291
                 FP     + PF P   V+    ++C              +GA L  +      I
Sbjct: 271 LLLNRLFPRLSNAIKPFLPALTVID---MSC-------------CIGAPLALN------I 308

Query: 292 KSILSGELGVIILSVLLLHFAGFFVGYLSAAICGFKEPQ----RRAISIEVGMQNSSLGV 347
            SILS     I+  V+  H   F  GY        K P     +R IS E GMQ+S L +
Sbjct: 309 DSILSPFGATILFLVITFHLLAFVAGYFFTGFFFSKAPDVKALQRTISYETGMQSSLLAL 368

Query: 348 VLATAHFTSSMVALPPAMSAVIMNIMGSTLGFFWR 382
            LAT  F   +V +PPA+S V+M++MG +L   W+
Sbjct: 369 ALATKFFQDPLVGVPPAISTVVMSLMGVSLVTIWK 403

Plastidic transporter involved in the biosynthesis of aliphatic glucosinolates by translocating the biosynthetic intermediates of Met-derived glucosinolates across chloroplast membranes. Transports short chain (C2) alpha-keto acids, such as 4-methylsulfanyl-2-oxobutanoic acid, from the cytosol to the chloroplast where they are subjected to chain elongation cycles. Functions also in the transport of chain-elongated (C3 to C8) Met derivatives from the chloroplast to the cytosol. Does not seem to be involved in the transport of indole-derived glucosinolates.

Arabidopsis thaliana (taxid: 3702)

>sp|Q650U0|BASS5_ORYSJ Probable sodium/metabolite cotransporter BASS5, chloroplastic OS=Oryza sativa subsp. japonica GN=BASS5 PE=2 SV=1

 Score =  124 bits (312), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 109/335 (32%), Positives = 160/335 (47%), Gaps = 28/335 (8%)

Query: 59  VTEAKPRWEYLLSTAASLYPLYVTVGGVIACLKPSAFGWFVQRGPASYSLSLGLIMLAMG 118
           V E+K     +L +A ++ P  V    ++A + P +F WF  R    Y+ +LG +M A+G
Sbjct: 77  VEESKVDLLKILKSANTIIPHVVLGSTILALVYPPSFTWFTTR---YYAPALGFLMFAVG 133

Query: 119 LTLELKDLISLFMQRPLSILFGCAAQYTIMPTSGVIVSKF----LGLPPALSVGLILLSC 174
           +   +KD I   +QRP +I  G   Q+ I P  G +          LP AL  G++L+SC
Sbjct: 134 VNSSVKDFIEA-IQRPDAIAAGYVGQFIIKPFLGFLFGTLAVTIFNLPTALGAGIMLVSC 192

Query: 175 CPGGTASNVVTLIARGDV-PLSIVMTMCTTLGAVLFTPLLTKILAGTYVPVDAVKLSIST 233
             G   SN  T +    + PLSIVMT  +T  AV  TP L+  L G  +PVD   +  S 
Sbjct: 193 VSGAQLSNYATFLTDPHMAPLSIVMTSLSTATAVFVTPTLSYFLIGKKLPVDVKGMMSSI 252

Query: 234 LQSAFPAAVKVVTPFTPLFAVLMSSLLA--CSVFSENLVRLKSSVVGAALTSDLSLISRI 291
           +Q        VV P      +L++  L   CS     L  L   V    + S L++   I
Sbjct: 253 VQ-------IVVAPIAA--GLLLNRYLPRLCSAIQPFLPPLSVFVTALCVGSPLAI--NI 301

Query: 292 KSILSGELGVIILSVLLLHFAGFFVGYLSAAICGFKEPQ-----RRAISIEVGMQNSSLG 346
           K++LS      +L +   H + F  GY  A    F+E       +R +S E GMQ+S L 
Sbjct: 302 KAVLSPFGLATVLLLFAFHTSSFIAGYHLAGTW-FRESADVKALQRTVSFETGMQSSLLA 360

Query: 347 VVLATAHFTSSMVALPPAMSAVIMNIMGSTLGFFW 381
           + LA   F   +V +PPA+S V+M++MG  L   W
Sbjct: 361 LALANRFFPDPLVGVPPAISVVLMSLMGFALVMVW 395

May function as sodium-coupled metabolite transporter across the chloroplast envelope.

Oryza sativa subsp. japonica (taxid: 39947)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	398
255571016	412	sodium-bile acid cotransporter, putative	0.969	0.936	0.757	1e-161
225448132	410	PREDICTED: uncharacterized sodium-depend	0.979	0.951	0.701	1e-154
297739530	346	unnamed protein product [Vitis vinifera]	0.819	0.942	0.764	1e-141
449518811	404	PREDICTED: probable sodium/metabolite co	0.954	0.940	0.646	1e-135
449431852	404	PREDICTED: probable sodium/metabolite co	0.954	0.940	0.644	1e-135
449432938	422	PREDICTED: probable sodium/metabolite co	0.864	0.815	0.648	1e-120
449518813	404	PREDICTED: probable sodium/metabolite co	0.864	0.851	0.648	1e-120
242084940	403	hypothetical protein SORBIDRAFT_08g00452	0.798	0.789	0.642	1e-115
224034585	396	unknown [Zea mays]	0.801	0.805	0.630	1e-115
226496369	395	bile acid sodium symporter/ transporter	0.801	0.807	0.627	1e-114

>gi|255571016|ref|XP_002526459.1| sodium-bile acid cotransporter, putative [Ricinus communis] gi|223534239|gb|EEF35954.1| sodium-bile acid cotransporter, putative [Ricinus communis]

 Score =  575 bits (1483), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 303/400 (75%), Positives = 334/400 (83%), Gaps = 14/400 (3%)

Query: 3   LSLGLTLTPFTSPPPKTHLKIPVFRPKTPLAISSSPPSFKNLQ-ITRCVNENSQLLPVTE 61
           +SL  TLT FT+   +T+ K  +F P+      SSPP F+ L  + R V+E+S  LP TE
Sbjct: 1   MSLSSTLTHFTTFSQRTYFKSTLFTPRKQQFTISSPPKFRKLATVVRSVHEDSGYLPATE 60

Query: 62  AKPRWEYLLSTAASLYPLYVTVGGVIACLKPSAFGWFVQRGPASYSLSLGLIMLAMGLTL 121
           AKPRWE +LSTAASLYPLYVTVGGV+ACLKP  F WFV RGPASYSLSLGLIML+MG+TL
Sbjct: 61  AKPRWENVLSTAASLYPLYVTVGGVVACLKPDTFAWFVNRGPASYSLSLGLIMLSMGITL 120

Query: 122 ELKDLISLFMQRPLSILFGCAAQYTIMPTSGVIVSKFLGLPPALSVGLILLSCCPGGTAS 181
           ELKDLI+LFMQRPLSILFGC AQY+IMP  G+IVSK LGL P+LSVGLILL CCPGGTAS
Sbjct: 121 ELKDLIALFMQRPLSILFGCVAQYSIMPAFGMIVSKSLGLSPSLSVGLILLGCCPGGTAS 180

Query: 182 NVVTLIARGDVPLSIVMTMCTTLGAVLFTPLLTKILAGTYVPVDAVKLSIST-------- 233
           NVVTLIA+GDVPLSIVMT+CTTLGAVL TPLLTKILAGTYVPVDA+KLSIST        
Sbjct: 181 NVVTLIAQGDVPLSIVMTVCTTLGAVLLTPLLTKILAGTYVPVDALKLSISTLQVVVAPI 240

Query: 234 -----LQSAFPAAVKVVTPFTPLFAVLMSSLLACSVFSENLVRLKSSVVGAALTSDLSLI 288
                LQS FPAAVK VTPF PLFAVL SSLLACSVFSEN+VRLKSS+VGA+L    S +
Sbjct: 241 LLGSYLQSTFPAAVKAVTPFAPLFAVLASSLLACSVFSENVVRLKSSMVGASLPPGSSPL 300

Query: 289 SRIKSILSGELGVIILSVLLLHFAGFFVGYLSAAICGFKEPQRRAISIEVGMQNSSLGVV 348
             I+SILSGELGVIILSVLLLH AGFFVGY+SAAI GFKE +RRAISIEVGMQNSSLGVV
Sbjct: 301 LVIQSILSGELGVIILSVLLLHVAGFFVGYISAAIGGFKERERRAISIEVGMQNSSLGVV 360

Query: 349 LATAHFTSSMVALPPAMSAVIMNIMGSTLGFFWRYIDPSD 388
           LAT+HFTS +VALPPAMSAVIMNIMGSTLGF WR+IDPSD
Sbjct: 361 LATSHFTSPLVALPPAMSAVIMNIMGSTLGFIWRHIDPSD 400

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225448132|ref|XP_002263202.1| PREDICTED: uncharacterized sodium-dependent transporter yocS-like [Vitis vinifera]

 Score =  550 bits (1418), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 284/405 (70%), Positives = 325/405 (80%), Gaps = 15/405 (3%)

Query: 3   LSLGLTLTPFTSPPPKTHLKIPVFRPKTPLAISSSPPSFKNLQITRCVNENSQLLPVTEA 62
           +SL L LTPF S  P++H +IP+  P+ P    S       L   R V E     P+T +
Sbjct: 1   MSLSLCLTPFASSSPQSHPRIPLPIPRNPTIFPSR--KLSKLHPIRSVQEQFDHQPLTRS 58

Query: 63  KPRWEYLLSTAASLYPLYVTVGGVIACLKPSAFGWFVQRGPASYSLSLGLIMLAMGLTLE 122
            PRWE +LSTAASLYPLYVT GGV+AC+KPS F WFV++GPASYSLSLGLIML+MG+TL+
Sbjct: 59  TPRWENMLSTAASLYPLYVTAGGVVACVKPSVFAWFVEKGPASYSLSLGLIMLSMGITLK 118

Query: 123 LKDLISLFMQRPLSILFGCAAQYTIMPTSGVIVSKFLGLPPALSVGLILLSCCPGGTASN 182
           L+D  +L +QRP SILFGC AQYTIMP+ G+I+SK LGL P+L+VGLILL+CCPGGTASN
Sbjct: 119 LRDFFNLLIQRPFSILFGCVAQYTIMPSFGLIISKALGLSPSLTVGLILLACCPGGTASN 178

Query: 183 VVTLIARGDVPLSIVMTMCTTLGAVLFTPLLTKILAGTYVPVDAVKLSISTL-------- 234
           VVTLIARGDVPLSIVMT+CTT GAVL TPLLTKILAG YVPV+A  LSISTL        
Sbjct: 179 VVTLIARGDVPLSIVMTICTTFGAVLLTPLLTKILAGAYVPVNAANLSISTLQVVVGPIL 238

Query: 235 -----QSAFPAAVKVVTPFTPLFAVLMSSLLACSVFSENLVRLKSSVVGAALTSDLSLIS 289
                QS FP  VK VTPF PLFAVL SSLLACSVFSEN+VRLKSS+V A+L SD+S + 
Sbjct: 239 LGSYIQSRFPELVKAVTPFAPLFAVLASSLLACSVFSENVVRLKSSMVSASLASDVSPLL 298

Query: 290 RIKSILSGELGVIILSVLLLHFAGFFVGYLSAAICGFKEPQRRAISIEVGMQNSSLGVVL 349
            I+S+LSGELG++ILSVLLLHFAGFFVGY +AAI GF E QRRAIS+EVGMQNSSLGVVL
Sbjct: 299 CIQSLLSGELGLVILSVLLLHFAGFFVGYTAAAIAGFGERQRRAISVEVGMQNSSLGVVL 358

Query: 350 ATAHFTSSMVALPPAMSAVIMNIMGSTLGFFWRYIDPSDSKTSPK 394
           AT+HF S MVALPPAMSAVIMNIMGS+LGFFWRYIDPSDSK +PK
Sbjct: 359 ATSHFPSPMVALPPAMSAVIMNIMGSSLGFFWRYIDPSDSKNNPK 403

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297739530|emb|CBI29712.3| unnamed protein product [Vitis vinifera]

 Score =  508 bits (1309), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 259/339 (76%), Positives = 292/339 (86%), Gaps = 13/339 (3%)

Query: 69  LLSTAASLYPLYVTVGGVIACLKPSAFGWFVQRGPASYSLSLGLIMLAMGLTLELKDLIS 128
           +LSTAASLYPLYVT GGV+AC+KPS F WFV++GPASYSLSLGLIML+MG+TL+L+D  +
Sbjct: 1   MLSTAASLYPLYVTAGGVVACVKPSVFAWFVEKGPASYSLSLGLIMLSMGITLKLRDFFN 60

Query: 129 LFMQRPLSILFGCAAQYTIMPTSGVIVSKFLGLPPALSVGLILLSCCPGGTASNVVTLIA 188
           L +QRP SILFGC AQYTIMP+ G+I+SK LGL P+L+VGLILL+CCPGGTASNVVTLIA
Sbjct: 61  LLIQRPFSILFGCVAQYTIMPSFGLIISKALGLSPSLTVGLILLACCPGGTASNVVTLIA 120

Query: 189 RGDVPLSIVMTMCTTLGAVLFTPLLTKILAGTYVPVDAVKLSISTL-------------Q 235
           RGDVPLSIVMT+CTT GAVL TPLLTKILAG YVPV+A  LSISTL             Q
Sbjct: 121 RGDVPLSIVMTICTTFGAVLLTPLLTKILAGAYVPVNAANLSISTLQVVVGPILLGSYIQ 180

Query: 236 SAFPAAVKVVTPFTPLFAVLMSSLLACSVFSENLVRLKSSVVGAALTSDLSLISRIKSIL 295
           S FP  VK VTPF PLFAVL SSLLACSVFSEN+VRLKSS+V A+L SD+S +  I+S+L
Sbjct: 181 SRFPELVKAVTPFAPLFAVLASSLLACSVFSENVVRLKSSMVSASLASDVSPLLCIQSLL 240

Query: 296 SGELGVIILSVLLLHFAGFFVGYLSAAICGFKEPQRRAISIEVGMQNSSLGVVLATAHFT 355
           SGELG++ILSVLLLHFAGFFVGY +AAI GF E QRRAIS+EVGMQNSSLGVVLAT+HF 
Sbjct: 241 SGELGLVILSVLLLHFAGFFVGYTAAAIAGFGERQRRAISVEVGMQNSSLGVVLATSHFP 300

Query: 356 SSMVALPPAMSAVIMNIMGSTLGFFWRYIDPSDSKTSPK 394
           S MVALPPAMSAVIMNIMGS+LGFFWRYIDPSDSK +PK
Sbjct: 301 SPMVALPPAMSAVIMNIMGSSLGFFWRYIDPSDSKNNPK 339

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449518811|ref|XP_004166429.1| PREDICTED: probable sodium/metabolite cotransporter BASS1, chloroplastic-like [Cucumis sativus]

 Score =  489 bits (1259), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 262/405 (64%), Positives = 308/405 (76%), Gaps = 25/405 (6%)

Query: 5   LGLTLTPFTSPPPKTHLKIPVFRPKTPLAISSSPPSFKNLQIT-RCVNENSQLLPVTEAK 63
           + L LTPF SP         + RP   L     PP      +T R V +N++L   +   
Sbjct: 4   ISLQLTPFISPL--------IHRPNLRLHRPPIPPLSPPRLLTVRSVQQNNELPSPSPPP 55

Query: 64  PR--WEYLLSTAASLYPLYVTVGGVIACLKPSAFGWFVQRGPASYSLSLGLIMLAMGLTL 121
                +  LSTAASLYPLYVT GG++ACL+PS F WFVQRGP+SYSLSLGLIMLAMGLTL
Sbjct: 56  KPTGLDDFLSTAASLYPLYVTAGGIVACLEPSTFSWFVQRGPSSYSLSLGLIMLAMGLTL 115

Query: 122 ELKDLISLFMQRPLSILFGCAAQYTIMPTSGVIVSKFLGLPPALSVGLILLSCCPGGTAS 181
           E+KDL +LFMQRPLSILFGC AQYTIMP S V++ K LGL  +L  GL+LL CCPGG+AS
Sbjct: 116 EIKDLFNLFMQRPLSILFGCVAQYTIMPASAVLIGKLLGLSQSLLFGLVLLGCCPGGSAS 175

Query: 182 NVVTLIARGDVPLSIVMTMCTTLGAVLFTPLLTKILAGTYVPVDAVKLSIST-------- 233
           NVVTLIA+GDVPLSIVMT+CTTLGAV+FTP LTK L G Y+PVDA +LS+ST        
Sbjct: 176 NVVTLIAQGDVPLSIVMTVCTTLGAVIFTPFLTKFLVGAYIPVDAAQLSLSTLQVVVAPI 235

Query: 234 -----LQSAFPAAVKVVTPFTPLFAVLMSSLLACSVFSENLVRLKSSVVGAALTSDLSLI 288
                LQ AFP+ VK+V PF PL AVL SSLLA SVFSEN++R+KSS+V A L SD SL 
Sbjct: 236 LLGSCLQKAFPSLVKLVLPFAPLVAVLTSSLLASSVFSENVIRIKSSMVSATLASDASLW 295

Query: 289 SRIKSILSGELGVIILSVLLLHFAGFFVGYLSAAICGFKEPQRRAISIEVGMQNSSLGVV 348
           + +KSILSGELGV+ILSV  LHFAGFFVGY++AAICGF+E +RR IS++VGMQNSSLGVV
Sbjct: 296 TVLKSILSGELGVVILSVFCLHFAGFFVGYIAAAICGFRERERRTISMQVGMQNSSLGVV 355

Query: 349 LATAHFTSSMVALPPAMSAVIMNIMGSTLGFFWRYIDPSDS-KTS 392
           LA +HF+S+MVALPPA+SAVIMN+MGSTLGF W+YI PSD  KTS
Sbjct: 356 LAASHFSSAMVALPPAISAVIMNMMGSTLGFCWKYIQPSDEVKTS 400

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449431852|ref|XP_004133714.1| PREDICTED: probable sodium/metabolite cotransporter BASS1, chloroplastic-like [Cucumis sativus]

 Score =  488 bits (1257), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 261/405 (64%), Positives = 306/405 (75%), Gaps = 25/405 (6%)

Query: 5   LGLTLTPFTSPPPKTHLKIPVFRPKTPLAISSSPPSFKNLQIT-RCVNENSQ--LLPVTE 61
           + L LTPF SP         + RP   L     PP      +T R V +N++        
Sbjct: 4   ISLQLTPFISPL--------IHRPNLRLHRPPIPPLSPPRSLTVRSVQQNNEHPSPSPPP 55

Query: 62  AKPRWEYLLSTAASLYPLYVTVGGVIACLKPSAFGWFVQRGPASYSLSLGLIMLAMGLTL 121
                +  LSTAASLYPLYVT GG++ACL+PS F WFVQRGP+SYSLSLGLIMLAMGLTL
Sbjct: 56  KPTGLDDFLSTAASLYPLYVTAGGIVACLEPSTFSWFVQRGPSSYSLSLGLIMLAMGLTL 115

Query: 122 ELKDLISLFMQRPLSILFGCAAQYTIMPTSGVIVSKFLGLPPALSVGLILLSCCPGGTAS 181
           E+KDL +LFMQRPLSILFGC AQYTIMP S V++ K LGL  +L  GL+LL CCPGG+AS
Sbjct: 116 EIKDLFNLFMQRPLSILFGCVAQYTIMPASAVLIGKLLGLSQSLLFGLVLLGCCPGGSAS 175

Query: 182 NVVTLIARGDVPLSIVMTMCTTLGAVLFTPLLTKILAGTYVPVDAVKLSIST-------- 233
           NVVTLIA+GDVPLSIVMT+CTTLGAV+FTP LTK L G Y+PVDA +LS+ST        
Sbjct: 176 NVVTLIAQGDVPLSIVMTVCTTLGAVIFTPFLTKFLVGAYIPVDAAQLSLSTLQVVVAPI 235

Query: 234 -----LQSAFPAAVKVVTPFTPLFAVLMSSLLACSVFSENLVRLKSSVVGAALTSDLSLI 288
                LQ AFP+ VK+V PF PL AVL SSLLA SVFSEN++R+KSS+V A L SD SL 
Sbjct: 236 LLGSCLQKAFPSLVKLVLPFAPLVAVLTSSLLASSVFSENVIRIKSSMVSATLASDASLW 295

Query: 289 SRIKSILSGELGVIILSVLLLHFAGFFVGYLSAAICGFKEPQRRAISIEVGMQNSSLGVV 348
           + +KSILSGELGV+ILSV  LHFAGFFVGY++AAICGF+E +RR IS++VGMQNSSLGVV
Sbjct: 296 TVLKSILSGELGVVILSVFCLHFAGFFVGYIAAAICGFRERERRTISMQVGMQNSSLGVV 355

Query: 349 LATAHFTSSMVALPPAMSAVIMNIMGSTLGFFWRYIDPSDS-KTS 392
           LA +HF+S+MVALPPA+SAVIMN+MGSTLGF W+YI PSD  KTS
Sbjct: 356 LAASHFSSAMVALPPAISAVIMNMMGSTLGFCWKYIQPSDEVKTS 400

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449432938|ref|XP_004134255.1| PREDICTED: probable sodium/metabolite cotransporter BASS1, chloroplastic-like [Cucumis sativus]

 Score =  436 bits (1122), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 234/361 (64%), Positives = 279/361 (77%), Gaps = 17/361 (4%)

Query: 44  LQITRCVNENSQLLPV----TEAKPRWEYLLSTAASLYPLYVTVGGVIACLKPSAFGWFV 99
           L I R +  +++LLP+     +   R    +STAA L+PLY+T GG++AC+KPS F WFV
Sbjct: 60  LAIVRSLQRDTELLPLPPPPQKQTDRLAKFVSTAAGLFPLYITSGGIVACMKPSTFSWFV 119

Query: 100 QRGPASYSLSLGLIMLAMGLTLELKDLISLFMQRPLSILFGCAAQYTIMPTSGVIVSKFL 159
           QRGP SYSL+L L+MLAMGLTLELKDL +LFMQRPLSIL+ C AQYTIMP  G  + KFL
Sbjct: 120 QRGPGSYSLALSLVMLAMGLTLELKDLFNLFMQRPLSILYLCVAQYTIMPVVGAAIGKFL 179

Query: 160 GLPPALSVGLILLSCCPGGTASNVVTLIARGDVPLSIVMTMCTTLGAVLFTPLLTKILAG 219
           GL PALSVGLILL CCPGG AS+VVTLIARGDVPLSI+MT+CTTL AV+ TP LT+ L G
Sbjct: 180 GLAPALSVGLILLGCCPGGIASSVVTLIARGDVPLSIIMTVCTTLQAVVLTPFLTRTLVG 239

Query: 220 TYVPVDAVKLSIST-------------LQSAFPAAVKVVTPFTPLFAVLMSSLLACSVFS 266
             +PVDA+KLS+ST             LQ   P  VK + PF+PLFAVL SSLLACSVFS
Sbjct: 240 ASIPVDAIKLSLSTLQVVVVPILIGSYLQKTCPGVVKRIIPFSPLFAVLTSSLLACSVFS 299

Query: 267 ENLVRLKSSVVGAALTSDLSLISRIKSILSGELGVIILSVLLLHFAGFFVGYLSAAICGF 326
           EN+VR KSS+V ++L+ D S    IK++LS ELG++IL+V  LH AGF VGY  AAI GF
Sbjct: 300 ENIVRFKSSLVSSSLSFDASPWIAIKTMLSEELGIVILAVFSLHLAGFVVGYTIAAIGGF 359

Query: 327 KEPQRRAISIEVGMQNSSLGVVLATAHFTSSMVALPPAMSAVIMNIMGSTLGFFWRYIDP 386
           +E +RRAIS+EVGMQNSSLGVVLATAHF+S+MVALP AMSAVIMN+MGS+LG FWR I+P
Sbjct: 360 RERERRAISLEVGMQNSSLGVVLATAHFSSAMVALPAAMSAVIMNMMGSSLGSFWRNIEP 419

Query: 387 S 387
           S
Sbjct: 420 S 420

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449518813|ref|XP_004166430.1| PREDICTED: probable sodium/metabolite cotransporter BASS1, chloroplastic-like [Cucumis sativus]

 Score =  436 bits (1121), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 234/361 (64%), Positives = 279/361 (77%), Gaps = 17/361 (4%)

Query: 44  LQITRCVNENSQLLPV----TEAKPRWEYLLSTAASLYPLYVTVGGVIACLKPSAFGWFV 99
           L I R +  +++LLP+     +   R    +STAA L+PLY+T GG++AC+KPS F WFV
Sbjct: 42  LAIVRSLQRDTELLPLPPPPQKQTDRLAKFVSTAAGLFPLYITSGGIVACMKPSTFSWFV 101

Query: 100 QRGPASYSLSLGLIMLAMGLTLELKDLISLFMQRPLSILFGCAAQYTIMPTSGVIVSKFL 159
           QRGP SYSL+L L+MLAMGLTLELKDL +LFMQRPLSIL+ C AQYTIMP  G  + KFL
Sbjct: 102 QRGPGSYSLALSLVMLAMGLTLELKDLFNLFMQRPLSILYLCVAQYTIMPVVGAAIGKFL 161

Query: 160 GLPPALSVGLILLSCCPGGTASNVVTLIARGDVPLSIVMTMCTTLGAVLFTPLLTKILAG 219
           GL PALSVGLILL CCPGG AS+VVTLIARGDVPLSI+MT+CTTL AV+ TP LT+ L G
Sbjct: 162 GLAPALSVGLILLGCCPGGIASSVVTLIARGDVPLSIIMTVCTTLQAVVLTPFLTRTLVG 221

Query: 220 TYVPVDAVKLSIST-------------LQSAFPAAVKVVTPFTPLFAVLMSSLLACSVFS 266
             +PVDA+KLS+ST             LQ   P  VK + PF+PLFAVL SSLLACSVFS
Sbjct: 222 ASIPVDAIKLSLSTLQVVVVPILIGSYLQKTCPGVVKRIIPFSPLFAVLTSSLLACSVFS 281

Query: 267 ENLVRLKSSVVGAALTSDLSLISRIKSILSGELGVIILSVLLLHFAGFFVGYLSAAICGF 326
           EN+VR KSS+V ++L+ D S    IK++LS ELG++IL+V  LH AGF VGY  AAI GF
Sbjct: 282 ENIVRFKSSLVSSSLSFDASPWIAIKTMLSEELGIVILAVFSLHLAGFVVGYTIAAIGGF 341

Query: 327 KEPQRRAISIEVGMQNSSLGVVLATAHFTSSMVALPPAMSAVIMNIMGSTLGFFWRYIDP 386
           +E +RRAIS+EVGMQNSSLGVVLATAHF+S+MVALP AMSAVIMN+MGS+LG FWR I+P
Sbjct: 342 RERERRAISLEVGMQNSSLGVVLATAHFSSAMVALPAAMSAVIMNMMGSSLGSFWRNIEP 401

Query: 387 S 387
           S
Sbjct: 402 S 402

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|242084940|ref|XP_002442895.1| hypothetical protein SORBIDRAFT_08g004520 [Sorghum bicolor] gi|241943588|gb|EES16733.1| hypothetical protein SORBIDRAFT_08g004520 [Sorghum bicolor]

 Score =  421 bits (1082), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 223/347 (64%), Positives = 258/347 (74%), Gaps = 29/347 (8%)

Query: 64  PRWEYLLSTAASLYPLYVTVGGVIACLKPSAFGWFVQRGPASYSLSLGLIMLAMGLTLEL 123
           PRW   LS AA LYP  V V       +P AF WFV   P SY+ +LG IMLAMGL L+L
Sbjct: 69  PRWHAALSAAAGLYPASVAVA------RPEAFRWFVALAPGSYTATLGFIMLAMGLALQL 122

Query: 124 KDLISLFMQRPLSILFGCAAQYTIMPTSGVIVSKFLGLPPALSVGLILLSCCPGGTASNV 183
           +D  +L   RPL+ILFGCAAQY IMP  G IVS  LGLPP LS GLILL CCPGGTASNV
Sbjct: 123 RDFAALLRDRPLAILFGCAAQYAIMPAFGAIVSHALGLPPPLSAGLILLGCCPGGTASNV 182

Query: 184 VTLIARGDVPLSIVMTMCTTLGAVLFTPLLTKILAGTYVPVDAVKLSISTL--------- 234
           VTL+A+GDVPLSIVMT+C+TL AV  TPLLTKILAG Y+PVDAVKLS+STL         
Sbjct: 183 VTLVAQGDVPLSIVMTVCSTLAAVFLTPLLTKILAGAYIPVDAVKLSLSTLQVVVAPILL 242

Query: 235 ----QSAFPAAVKVVTPFTPLFAVLMSSLLACSVFSENLVRLKSSVVGAALTSDLSLISR 290
               Q+AFP+ V+ VTPF PL AVL SSLLACSVFSEN VRL+S++      +D S +S 
Sbjct: 243 GSSIQTAFPSVVQFVTPFAPLMAVLASSLLACSVFSENFVRLRSTI------ADASSVS- 295

Query: 291 IKSILSGELGVIILSVLLLHFAGFFVGYLSAAICGFKEPQRRAISIEVGMQNSSLGVVLA 350
             +  S ++G+++LSV LLHFAGFFVGY +AAI GFKE QRRAISIEVGMQNSSLGVVLA
Sbjct: 296 -GNFFSRDIGIVMLSVFLLHFAGFFVGYAAAAIGGFKEKQRRAISIEVGMQNSSLGVVLA 354

Query: 351 TAHFTSSMVALPPAMSAVIMNIMGSTLGFFWRYIDPSDSKTSPKTVD 397
           TAHF+S +VALPPA+SAVIMN+MGSTLG  W+ I PS S+   +T D
Sbjct: 355 TAHFSSPLVALPPALSAVIMNMMGSTLGLIWQSISPSVSEN--ETTD 399

Source: Sorghum bicolor

Species: Sorghum bicolor

Genus: Sorghum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224034585|gb|ACN36368.1| unknown [Zea mays]

 Score =  421 bits (1081), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 215/341 (63%), Positives = 252/341 (73%), Gaps = 22/341 (6%)

Query: 65  RWEYLLSTAASLYPLYVTVGGVIACLKPSAFGWFVQRGPASYSLSLGLIMLAMGLTLELK 124
           RW   LS AA LYP YV  G  +A  +P AF WFV   P SY+ +LG IMLAMGLTL+L 
Sbjct: 62  RWHAALSAAAGLYPAYVAAGASVAFTRPEAFRWFVALAPGSYTATLGFIMLAMGLTLQLS 121

Query: 125 DLISLFMQRPLSILFGCAAQYTIMPTSGVIVSKFLGLPPALSVGLILLSCCPGGTASNVV 184
           D  +L   RPL+ILFGCAAQYTIMP  G I+S  LGLPP+LS GLILL CCPGGTASNVV
Sbjct: 122 DFAALLRDRPLAILFGCAAQYTIMPAFGAIISHALGLPPSLSAGLILLGCCPGGTASNVV 181

Query: 185 TLIARGDVPLSIVMTMCTTLGAVLFTPLLTKILAGTYVPVDAVKLSISTL---------- 234
           TL+A+GDVPLS+VMT+C+TL AV  TPLLTKILAG Y+PVDAVKLS+STL          
Sbjct: 182 TLVAQGDVPLSVVMTVCSTLAAVFLTPLLTKILAGAYIPVDAVKLSLSTLQVVVAPILLG 241

Query: 235 ---QSAFPAAVKVVTPFTPLFAVLMSSLLACSVFSENLVRLKSSVVGAALTSDLSLISRI 291
              Q+AFP+  + ++PF PL AVL SSLLA SVFSEN VRL+S++  A         S +
Sbjct: 242 SLIQTAFPSVAQFLSPFAPLMAVLASSLLASSVFSENFVRLRSTIADA---------SPV 292

Query: 292 KSILSGELGVIILSVLLLHFAGFFVGYLSAAICGFKEPQRRAISIEVGMQNSSLGVVLAT 351
             +  G++G +I SV LLHFAGFFVGY +AAI GFKE QRRAISIEVGMQNSSLGVVLAT
Sbjct: 293 NGMFFGDVGTVIFSVFLLHFAGFFVGYAAAAIGGFKEKQRRAISIEVGMQNSSLGVVLAT 352

Query: 352 AHFTSSMVALPPAMSAVIMNIMGSTLGFFWRYIDPSDSKTS 392
           AHF+S +VALPPA+SAV+MN+MGSTLG  W+Y   S S+  
Sbjct: 353 AHFSSPLVALPPAVSAVVMNMMGSTLGLVWQYTSTSVSENE 393

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|226496369|ref|NP_001152351.1| bile acid sodium symporter/ transporter [Zea mays] gi|195655405|gb|ACG47170.1| bile acid sodium symporter/ transporter [Zea mays]

 Score =  417 bits (1073), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 214/341 (62%), Positives = 251/341 (73%), Gaps = 22/341 (6%)

Query: 65  RWEYLLSTAASLYPLYVTVGGVIACLKPSAFGWFVQRGPASYSLSLGLIMLAMGLTLELK 124
           RW   LS AA LYP YV  G  +A  +P AF WFV   P SY+ +L  IMLAMGLTL+L 
Sbjct: 61  RWHAALSAAAGLYPAYVAAGASVAFTRPEAFRWFVALAPGSYTATLDFIMLAMGLTLQLS 120

Query: 125 DLISLFMQRPLSILFGCAAQYTIMPTSGVIVSKFLGLPPALSVGLILLSCCPGGTASNVV 184
           D  +L   RPL+ILFGCAAQYTIMP  G I+S  LGLPP+LS GLILL CCPGGTASNVV
Sbjct: 121 DFAALLRDRPLAILFGCAAQYTIMPVFGAIISHALGLPPSLSAGLILLGCCPGGTASNVV 180

Query: 185 TLIARGDVPLSIVMTMCTTLGAVLFTPLLTKILAGTYVPVDAVKLSISTL---------- 234
           TL+A+GDVPLS+VMT+C+TL AV  TPLLTKILAG Y+PVDAVKLS+STL          
Sbjct: 181 TLVAQGDVPLSVVMTVCSTLAAVFLTPLLTKILAGAYIPVDAVKLSLSTLQVVVAPILLG 240

Query: 235 ---QSAFPAAVKVVTPFTPLFAVLMSSLLACSVFSENLVRLKSSVVGAALTSDLSLISRI 291
              Q+AFP+  + ++PF PL AVL SSLLA SVFSEN VRL+S++  A         S +
Sbjct: 241 SLIQTAFPSVAQFLSPFAPLMAVLASSLLASSVFSENFVRLRSTIADA---------SPV 291

Query: 292 KSILSGELGVIILSVLLLHFAGFFVGYLSAAICGFKEPQRRAISIEVGMQNSSLGVVLAT 351
             +  G++G +I SV LLHFAGFFVGY +AAI GFKE QRRAISIEVGMQNSSLGVVLAT
Sbjct: 292 NGMFFGDVGTVIFSVFLLHFAGFFVGYAAAAIGGFKEKQRRAISIEVGMQNSSLGVVLAT 351

Query: 352 AHFTSSMVALPPAMSAVIMNIMGSTLGFFWRYIDPSDSKTS 392
           AHF+S +VALPPA+SAV+MN+MGSTLG  W+Y   S S+  
Sbjct: 352 AHFSSPLVALPPAVSAVVMNMMGSTLGLVWQYTSTSVSENE 392

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	398
TAIR|locus:2202935	401	AT1G78560 "AT1G78560" [Arabido	0.798	0.793	0.400	1.7e-52
TAIR|locus:2039533	409	BASS2 "AT2G26900" [Arabidopsis	0.796	0.775	0.389	9.2e-52
TIGR_CMR|BA_3574	322	BA_3574 "bile acid transporter	0.738	0.913	0.371	4.6e-41
UNIPROTKB|Q8E8Y1	308	SO_4519 "Sodium-dependent tran	0.718	0.928	0.354	7e-38
TIGR_CMR|SO_4519	308	SO_4519 "sodium-dependent tran	0.718	0.928	0.354	7e-38
TAIR|locus:2094483	431	AT3G25410 "AT3G25410" [Arabido	0.731	0.675	0.329	8.2e-37
TAIR|locus:2132664	409	AT4G22840 "AT4G22840" [Arabido	0.763	0.743	0.327	5.2e-33
TAIR|locus:2118021	407	BAT5 "AT4G12030" [Arabidopsis	0.756	0.739	0.323	1.4e-30
UNIPROTKB|F6PLG8	305	SLC10A2 "Uncharacterized prote	0.572	0.747	0.317	6.3e-20
TIGR_CMR|SPO_0797	300	SPO_0797 "bile acid transporte	0.618	0.82	0.285	2.3e-19

TAIR|locus:2202935 AT1G78560 "AT1G78560" [Arabidopsis thaliana (taxid:3702)]

 Score = 544 (196.6 bits), Expect = 1.7e-52, P = 1.7e-52
 Identities = 141/352 (40%), Positives = 195/352 (55%)

Query:    46 ITRC-VNENSQLLPVTEAKP--RW-EYLLSTAASLYPLYVTVGGVIACLKPSAFGWFVQR 101
             + RC ++ N   LP  + K    W E++    ++ +P++V++G ++  ++PS F W    
Sbjct:    68 VPRCGISSND--LPTEKKKSFGEWVEFVGEAVSTAFPIWVSLGCLLGLMRPSTFNWVT-- 123

Query:   102 GPASYSLSLGLIMLAMGLTLELKDLISLFMQRPLSILFGCAAQYTIMPTSGVIVSKFLGL 161
              P    + L + ML MG+TL L DL    +  P  +  G   QY++MP S   VSK L L
Sbjct:   124 -PNWTIVGLTITMLGMGMTLTLDDLRGA-LSMPKELFAGFLLQYSVMPLSAFFVSKLLNL 181

Query:   162 PPALSVGLILLSCCPGGTASNVVTLIARGDVPLSIVMTMCTTLGAVLFTPLLTKILAGTY 221
             PP  + GLIL+ CCPGGTASN+VT IARG+V LS++MT  +T+ AV+ TPLLT  LA  Y
Sbjct:   182 PPHYAAGLILVGCCPGGTASNIVTYIARGNVALSVLMTAASTVSAVIMTPLLTAKLAKQY 241

Query:   222 VPVDAVKLSISTLQSAFPAAVKVVTPFTPLFAVLMSSLLACSVFSENLVRLKSSV----- 276
             + VDA+ L +STLQ        VV     L  VL  + L  + + + LV+  S V     
Sbjct:   242 ITVDALGLLMSTLQ--------VV-----LLPVLAGAFL--NQYFKKLVKFVSPVMPPIA 286

Query:   277 VG--AALTXXXXXXXXXXXXXXGELGVIILSVLLLHFAGFFVGYLSAAICGFKEPQRRAI 334
             VG  A L               G+   ++L+  LLH +GF  GYL + I G      R I
Sbjct:   287 VGTVAILCGYAIGQNASAILMSGKQ--VVLASCLLHISGFLFGYLFSRILGIDVASSRTI 344

Query:   335 SIEVGMQNSSLGVVLATAHFTSSMVALPPAMSAVIMNIMGSTLGFFWRYIDP 386
             SIEVGMQNS LGVVLAT HF + + A+P A+S+V  +I+GS L   WR   P
Sbjct:   345 SIEVGMQNSVLGVVLATQHFGNPLTAVPCAVSSVCHSILGSVLAGIWRRSAP 396

GO:0005215 "transporter activity" evidence=ISS

GO:0006814 "sodium ion transport" evidence=IEA;ISS

GO:0008508 "bile acid:sodium symporter activity" evidence=IEA;ISS

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0016020 "membrane" evidence=ISS

GO:0035725 "sodium ion transmembrane transport" evidence=IEA;ISS

GO:0009941 "chloroplast envelope" evidence=IDA

TAIR|locus:2039533 BASS2 "AT2G26900" [Arabidopsis thaliana (taxid:3702)]

 Score = 537 (194.1 bits), Expect = 9.2e-52, P = 9.2e-52
 Identities = 132/339 (38%), Positives = 193/339 (56%)

Query:    57 LPVTEAKP--RWEYLLSTAASLYPLYVTVGGVIACLKPSAFGWFVQRGPASYSLSLGLIM 114
             LP +  K   ++E ++    +L+PL+V +G ++   KPS   W        ++L LG +M
Sbjct:    83 LPESTPKELSQYEKIIELLTTLFPLWVILGTLVGIFKPSLVTWLETD---LFTLGLGFLM 139

Query:   115 LAMGLTLELKDLISLFMQRPLSILFGCAAQYTIMPTSGVIVSKFLGLPPALSVGLILLSC 174
             L+MGLTL  +D     ++ P ++  G  AQY I P  G +++  L L   L+ GLIL+SC
Sbjct:   140 LSMGLTLTFEDFRRC-LRNPWTVGVGFLAQYMIKPILGFLIAMTLKLSAPLATGLILVSC 198

Query:   175 CPGGTASNVVTLIARGDVPLSIVMTMCTTLGAVLFTPLLTKILAGTYVPVDAVKLSISTL 234
             CPGG ASNV T I++G+V LS++MT C+T+GA++ TPLLTK+LAG  VPVDA  L++ST 
Sbjct:   199 CPGGQASNVATYISKGNVALSVLMTTCSTIGAIIMTPLLTKLLAGQLVPVDAAGLALSTF 258

Query:   235 QSAFPAAVKVVTPFTPLFAVLMSSLLACSVFSENLVRLKSSVVGAALTXXXXXXXXXXXX 294
             Q        V+ P   +  VL +       F+  ++ + + ++G  LT            
Sbjct:   259 QV-------VLVP--TIIGVLANEFFP--KFTSKIITV-TPLIGVILTTLLCASPIGQVA 306

Query:   295 XXGEL-GV-IILSVLLLHFAGFFVGYLSAAICGFKEPQRRAISIEVGMQNSSLGVVLATA 352
                +  G  +IL V LLH A F +GY  +    F E   R ISIE GMQ+S+LG +LA  
Sbjct:   307 DVLKTQGAQLILPVALLHAAAFAIGYWISKF-SFGESTSRTISIECGMQSSALGFLLAQK 365

Query:   353 HFTSSMVALPPAMSAVIMNIMGSTLGFFWRYID-PSDSK 390
             HFT+ +VA+P A+S V M + GS L  FWR +  P+D K
Sbjct:   366 HFTNPLVAVPSAVSVVCMALGGSGLAVFWRNLPIPADDK 404

GO:0005215 "transporter activity" evidence=ISS

GO:0006814 "sodium ion transport" evidence=ISS

GO:0008508 "bile acid:sodium symporter activity" evidence=ISS

GO:0009507 "chloroplast" evidence=ISM

GO:0016020 "membrane" evidence=ISS

GO:0035725 "sodium ion transmembrane transport" evidence=ISS

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0009534 "chloroplast thylakoid" evidence=IDA

GO:0006849 "plasma membrane pyruvate transport" evidence=IDA

GO:0050833 "pyruvate transmembrane transporter activity" evidence=IDA

GO:0000023 "maltose metabolic process" evidence=RCA

GO:0019252 "starch biosynthetic process" evidence=RCA

GO:0019761 "glucosinolate biosynthetic process" evidence=RCA

GO:0043085 "positive regulation of catalytic activity" evidence=RCA

TIGR_CMR|BA_3574 BA_3574 "bile acid transporter family protein" [Bacillus anthracis str. Ames (taxid:198094)]

 Score = 436 (158.5 bits), Expect = 4.6e-41, P = 4.6e-41
 Identities = 119/320 (37%), Positives = 176/320 (55%)

Query:    67 EYLLSTAASLYPLYVTVGGVIACLKPSAFGWFVQRGPASY-SLSLGLIMLAMGLTLELKD 125
             E + + A   +  +V     IA   P+ F      G  SY ++ LG++M  MGLTL+  D
Sbjct:     5 EAISNIAGKYFAFWVICIATIAYFIPAPF-----LGLNSYITILLGVVMFGMGLTLKAVD 59

Query:   126 LISLFMQRPLSILFGCAAQYTIMPTSGVIVSKFLGLPPALSVGLILLSCCPGGTASNVVT 185
                +   +PL ++ G  AQ+ IMP    +++  + LP  L+ GL+LL   PGGTASNV+ 
Sbjct:    60 F-KIIATKPLPVIIGVCAQFIIMPLVAYVLAYVMNLPAELAAGLVLLGSVPGGTASNVMV 118

Query:   186 LIARGDVPLSIVMTMCTTLGAVLFTPLLTKILAGTYVPVDAVKLSISTLQSAF-PAAVK- 243
              +A+G++ LSI MT  +TL A + TPL+  +LAG ++PV+ + + +S +Q    P  +  
Sbjct:   119 YLAKGNLALSIAMTSLSTLLAPIATPLILLLLAGQWMPVNPMSMFLSIVQVIIIPIILGL 178

Query:   244 VVTPFTPLFAVL-MSSLLACSVFSENLVRLKSSVVGAALTXXXXXXXXXXXXXXGELGVI 302
             VV  F P      M+ +   SV +  ++ + S+VV A ++                 G++
Sbjct:   179 VVKKFFPKTVTKGMTVIPFISVLA--IIIIVSAVVSANVSSITSS------------GLL 224

Query:   303 ILSVLLLHFA-GFFVGYLSAAICGFKEPQRRAISIEVGMQNSSLGVVLATAHFTSSMVAL 361
             IL  ++LH A GF +GY++A I    E  RRAISIEVGMQNS LGV LATAHF  +  AL
Sbjct:   225 ILIAVMLHNAFGFLLGYITAFILKLDEGTRRAISIEVGMQNSGLGVALATAHFGPA-AAL 283

Query:   362 PPAMSAVIMNIMGSTLGFFW 381
             P  ++AV  NI G  L   W
Sbjct:   284 PSVLAAVWHNIAGPILATIW 303

GO:0006810 "transport" evidence=ISS

GO:0008508 "bile acid:sodium symporter activity" evidence=ISS

UNIPROTKB|Q8E8Y1 SO_4519 "Sodium-dependent transporter BASS family" [Shewanella oneidensis MR-1 (taxid:211586)]

 Score = 406 (148.0 bits), Expect = 7.0e-38, P = 7.0e-38
 Identities = 110/310 (35%), Positives = 168/310 (54%)

Query:    76 LYPLYVTVGGVIACLKPSAFGWFVQRGPASYSLSLGLIMLAMGLTLELKDLISLFMQRPL 135
             L+PL+  +G V A L P+   WFV    +   L L +IML+MGLTL+L+D  + F Q+  
Sbjct:     7 LFPLFALLGAVTAYLMPA---WFVVFKNSIVPL-LVVIMLSMGLTLDLQDFANAFKQKR- 61

Query:   136 SILFGCAAQYTIMPTSGVIVSKFLGLPPALSVGLILLSCCPGGTASNVVTLIARGDVPLS 195
             +++ G   Q+T+MP S + +S  LGL   L++G++L+    GGTASNV+  +A+GDV LS
Sbjct:    62 AVITGLILQFTLMPLSALAISLLLGLDRELTIGMVLVGSVAGGTASNVICYLAKGDVALS 121

Query:   196 IVMTMCTTLGAVLFTPLLTKILAGTYVPVDAVKLSISTLQSAF-PAAVKVVTP--FTPLF 252
             I MT  +TL  V+ TPL+ ++L G  V +  + + +S ++    P  V VV    F P  
Sbjct:   122 ITMTALSTLAGVVLTPLIIQLLIGEMVAIPLMDMLLSLVKIVLIPVTVGVVLNHFFKPQV 181

Query:   253 AVLMSSLLACSVFSENLVRLKSSVVGAALTXXXXXXXXXXXXXXGELGVIILSVLLLHFA 312
             A L  +L   S+ +  +V   S +V  AL                ++G +IL  + LH  
Sbjct:   182 AKLSPALPLISIVA--IVMAISIIV--ALNAGQFA----------QVGPVILLAVFLHNG 227

Query:   313 -GFFVGYLSAAICGFKEPQRRAISIEVGMQNSSLGVVLATAHFTSSMVALPPAMSAVIMN 371
              G  +GYL   + GF     + ISIEVG+QNS L   L    F S + A+P A+ ++  N
Sbjct:   228 LGLTLGYLCCRLLGFSHTVCKTISIEVGLQNSGLATALCIKFF-SPISAIPSAIFSIWHN 286

Query:   372 IMGSTLGFFW 381
             + G+ L  +W
Sbjct:   287 LSGAMLAGYW 296

GO:0006810 "transport" evidence=ISS

GO:0015370 "solute:sodium symporter activity" evidence=ISS

TIGR_CMR|SO_4519 SO_4519 "sodium-dependent transporter" [Shewanella oneidensis MR-1 (taxid:211586)]

 Score = 406 (148.0 bits), Expect = 7.0e-38, P = 7.0e-38
 Identities = 110/310 (35%), Positives = 168/310 (54%)

Query:    76 LYPLYVTVGGVIACLKPSAFGWFVQRGPASYSLSLGLIMLAMGLTLELKDLISLFMQRPL 135
             L+PL+  +G V A L P+   WFV    +   L L +IML+MGLTL+L+D  + F Q+  
Sbjct:     7 LFPLFALLGAVTAYLMPA---WFVVFKNSIVPL-LVVIMLSMGLTLDLQDFANAFKQKR- 61

Query:   136 SILFGCAAQYTIMPTSGVIVSKFLGLPPALSVGLILLSCCPGGTASNVVTLIARGDVPLS 195
             +++ G   Q+T+MP S + +S  LGL   L++G++L+    GGTASNV+  +A+GDV LS
Sbjct:    62 AVITGLILQFTLMPLSALAISLLLGLDRELTIGMVLVGSVAGGTASNVICYLAKGDVALS 121

Query:   196 IVMTMCTTLGAVLFTPLLTKILAGTYVPVDAVKLSISTLQSAF-PAAVKVVTP--FTPLF 252
             I MT  +TL  V+ TPL+ ++L G  V +  + + +S ++    P  V VV    F P  
Sbjct:   122 ITMTALSTLAGVVLTPLIIQLLIGEMVAIPLMDMLLSLVKIVLIPVTVGVVLNHFFKPQV 181

Query:   253 AVLMSSLLACSVFSENLVRLKSSVVGAALTXXXXXXXXXXXXXXGELGVIILSVLLLHFA 312
             A L  +L   S+ +  +V   S +V  AL                ++G +IL  + LH  
Sbjct:   182 AKLSPALPLISIVA--IVMAISIIV--ALNAGQFA----------QVGPVILLAVFLHNG 227

Query:   313 -GFFVGYLSAAICGFKEPQRRAISIEVGMQNSSLGVVLATAHFTSSMVALPPAMSAVIMN 371
              G  +GYL   + GF     + ISIEVG+QNS L   L    F S + A+P A+ ++  N
Sbjct:   228 LGLTLGYLCCRLLGFSHTVCKTISIEVGLQNSGLATALCIKFF-SPISAIPSAIFSIWHN 286

Query:   372 IMGSTLGFFW 381
             + G+ L  +W
Sbjct:   287 LSGAMLAGYW 296

GO:0006810 "transport" evidence=ISS

GO:0015370 "solute:sodium symporter activity" evidence=ISS

TAIR|locus:2094483 AT3G25410 "AT3G25410" [Arabidopsis thaliana (taxid:3702)]

 Score = 373 (136.4 bits), Expect = 8.2e-37, Sum P(2) = 8.2e-37
 Identities = 103/313 (32%), Positives = 164/313 (52%)

Query:    74 ASLYPLYVTVGGVIACLKPSAFGWFVQRGPASYSLSLGLIMLAMGLTLELKDLISLFMQR 133
             ++L P  V +  V A   P +F W V +    Y+ +LG IML++G+ L + D  +L  +R
Sbjct:   112 SALLPFVVALTAVAALSYPPSFTW-VSKD--LYAPALGGIMLSIGIQLSVDDF-ALAFKR 167

Query:   134 PLSILFGCAAQYTIMPTSGVIVSKFLGLPPALSVGLILLSCCPGGTASNVVTLIARGDVP 193
             P+ +  G  AQY + P  GV+V+   G+P     G IL  C  G   S+  + +++ DV 
Sbjct:   168 PVPLSVGFVAQYVLKPLLGVLVANAFGMPRTFYAGFILTCCVAGAQLSSYASSLSKADVA 227

Query:   194 LSIVMTMCTTLGAVLFTPLLTKILAGTYVPVDAVKLSISTLQSAF-PAAVKVV--TPFTP 250
             +SI++T  TT+ +V+FTPLL+ +L G+ VPVDAV +S S LQ    P  + +V  T   P
Sbjct:   228 MSILLTSSTTIASVIFTPLLSGLLIGSVVPVDAVAMSKSILQVVLVPITLGLVLNTYAKP 287

Query:   251 LFAVLMSSLLACSVFSENLVRLKSSVVGAALTXXXXXXXXXXXXXXGELGVIILSVLLLH 310
             +  +L   +   ++   +L       +G+ L+                LG+I+  ++  H
Sbjct:   288 VVTLLQPVMPFVAMVCTSLC------IGSPLSINRSQILSAEG-----LGLIV-PIVTFH 335

Query:   311 FAGFFVGYLSAAICGFKEPQR--RAISIEVGMQNSSLGVVLATAHFTSSMVALPPAMSAV 368
                F +GY  + I G ++ +   R IS+  GMQ+S+L  +LA+  F  S  A+P A S V
Sbjct:   336 AVAFALGYWFSKIPGLRQEEEVSRTISLCTGMQSSTLAGLLAS-QFLGSSQAVPAACSVV 394

Query:   369 IMNIMGSTLGFFW 381
             +M IMG  L  FW
Sbjct:   395 VMAIMGLCLASFW 407

GO:0005215 "transporter activity" evidence=ISS

GO:0006814 "sodium ion transport" evidence=IEA;ISS

GO:0008508 "bile acid:sodium symporter activity" evidence=IEA;ISS

GO:0009507 "chloroplast" evidence=ISM

GO:0016020 "membrane" evidence=ISS

GO:0035725 "sodium ion transmembrane transport" evidence=IEA;ISS

GO:0009941 "chloroplast envelope" evidence=IDA

TAIR|locus:2132664 AT4G22840 "AT4G22840" [Arabidopsis thaliana (taxid:3702)]

 Score = 360 (131.8 bits), Expect = 5.2e-33, P = 5.2e-33
 Identities = 108/330 (32%), Positives = 160/330 (48%)

Query:    63 KPRWEYLLSTAASLYPLYVTVGGVIACLKPSAFGWFVQRGPASYSLSLGLIMLAMGLTLE 122
             KP     +  A S+ P  V    ++A + P +F WF  R    +  +LG +M A+G+   
Sbjct:    87 KPSIVDRMKKANSILPHVVLASTILALIYPPSFTWFTSR---YFVPALGFLMFAVGINSN 143

Query:   123 LKDLISLFMQRPLSILFGCAAQYTIMPTSGVI-----VSKFLGLPPALSVGLILLSCCPG 177
              KD +  F +RP +IL G   QY + P  G I     VS F  LP  +  G++L+SC  G
Sbjct:   144 EKDFLEAF-KRPKAILLGYVGQYLVKPVLGFIFGLAAVSLFQ-LPTPIGAGIMLVSCVSG 201

Query:   178 GTASNVVTLIARGDV-PLSIVMTMCTTLGAVLFTPLLTKILAGTYVPVDAVKLSISTLQS 236
                SN  T +    + PLSIVMT  +T  AVL TP+L+ +L G  +PVD VK  IS++  
Sbjct:   202 AQLSNYATFLTDPALAPLSIVMTSLSTATAVLVTPMLSLLLIGKKLPVD-VKGMISSILQ 260

Query:   237 AFPAAVKVVTPFTPLFAVLMSSLLACSVFSENLVRLKSSV-VGAALTXXXXXXXXXXXXX 295
                A +        LF  + +++     F   L  L ++  VGA L              
Sbjct:   261 VVIAPIAAGLLLNKLFPKVSNAIRP---FLPILSVLDTACCVGAPLALNINSVMSPFGAT 317

Query:   296 XGELGVIILSVLLLHFAGFFVGY-LSAAI---CGFKEPQRRAISIEVGMQNSSLGVVLAT 351
                   I+L V + H + F  GY L+ ++       +  +R +S E GMQ+S L + LAT
Sbjct:   318 ------ILLLVTMFHLSAFLAGYFLTGSVFRNAPDAKAMQRTLSYETGMQSSLLALALAT 371

Query:   352 AHFTSSMVALPPAMSAVIMNIMGSTLGFFW 381
               F   +V +PPA+S V+M++MG TL   W
Sbjct:   372 KFFQDPLVGIPPAISTVVMSLMGFTLVLIW 401

GO:0005215 "transporter activity" evidence=ISS

GO:0006814 "sodium ion transport" evidence=IEA;ISS

GO:0008508 "bile acid:sodium symporter activity" evidence=IEA;ISS

GO:0016020 "membrane" evidence=ISS

GO:0035725 "sodium ion transmembrane transport" evidence=IEA;ISS

GO:0009941 "chloroplast envelope" evidence=IDA

TAIR|locus:2118021 BAT5 "AT4G12030" [Arabidopsis thaliana (taxid:3702)]

 Score = 337 (123.7 bits), Expect = 1.4e-30, P = 1.4e-30
 Identities = 104/321 (32%), Positives = 153/321 (47%)

Query:    70 LSTAASLYPLYVTVGGVIACLKPSAFGWFVQRGPASYSLSLGLIMLAMGLTLELKDLISL 129
             L  A S  P  + +  ++A + P +F WF    P  +   LG +M A+G+    +D +  
Sbjct:    95 LKQAYSFIPHGILLSTILALVYPPSFTWFK---PRYFVPGLGFMMFAVGINSNERDFLEA 151

Query:   130 FMQRPLSILFGCAAQYTIMPTSG----VIVSKFLGLPPALSVGLILLSCCPGGTASNVVT 185
              ++RP +I  G   QY I P  G    VI      LP ++  G++L+SC  G   SN  T
Sbjct:   152 -LKRPDAIFAGYIGQYLIKPLLGYIFGVIAVSLFNLPTSIGAGIMLVSCVSGAQLSNYTT 210

Query:   186 LIARGDVP-LSIVMTMCTTLGAVLFTPLLTKILAGTYVPVDAVKLSISTLQSAF-PAAVK 243
              +    +  LSIVMT  +T  AVL TP+L+ +L G  +PVD   +  S LQ    P A  
Sbjct:   211 FLTDPSLAALSIVMTSISTATAVLVTPMLSLLLIGKKLPVDVFGMISSILQVVITPIAAG 270

Query:   244 VVTPFTPLFAVLMSSLLACSVFSENLVRLKSSV-VGAALTXXXXXXXXXXXXXXGELGVI 302
             ++     LF  L +++     F   L  +  S  +GA L                 L ++
Sbjct:   271 LL--LNRLFPRLSNAI---KPFLPALTVIDMSCCIGAPLALNIDSILSPFGATI--LFLV 323

Query:   303 ILSVLLLHFAG-FFVGYLSAAICGFKEPQRRAISIEVGMQNSSLGVVLATAHFTSSMVAL 361
             I   LL   AG FF G+  +     K  QR  IS E GMQ+S L + LAT  F   +V +
Sbjct:   324 ITFHLLAFVAGYFFTGFFFSKAPDVKALQR-TISYETGMQSSLLALALATKFFQDPLVGV 382

Query:   362 PPAMSAVIMNIMGSTLGFFWR 382
             PPA+S V+M++MG +L   W+
Sbjct:   383 PPAISTVVMSLMGVSLVTIWK 403

GO:0005215 "transporter activity" evidence=ISS;IMP

GO:0006814 "sodium ion transport" evidence=IEA;ISS

GO:0008508 "bile acid:sodium symporter activity" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0035725 "sodium ion transmembrane transport" evidence=IEA;ISS

GO:0009536 "plastid" evidence=IDA

GO:0009611 "response to wounding" evidence=IEP;IDA

GO:0009753 "response to jasmonic acid stimulus" evidence=IEP

GO:0019761 "glucosinolate biosynthetic process" evidence=RCA;IMP

UNIPROTKB|F6PLG8 SLC10A2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 239 (89.2 bits), Expect = 6.3e-20, P = 6.3e-20
 Identities = 80/252 (31%), Positives = 125/252 (49%)

Query:   112 LIMLAMGLTLELKDLISLFMQRPLSILFGCAAQYTIMPTSGVIVSKFLGLPPALSVGLIL 171
             ++M +MG  +E+K  +   ++RP  I  G   Q+ IMP +G I+S    + P  +V +++
Sbjct:     1 MVMFSMGCNVEIKKFLG-HIKRPWGICVGFLCQFGIMPLTGFILSVAFDILPLQAVVVLI 59

Query:   172 LSCCPGGTASNVVTLIARGDVPLSIVMTMCTTLGAVLFTPLL----TKIL--AGTYV-PV 224
             + CCPGGTASN++     GD+ LSI MT C+TL A+   PL     TK+   +GT V P 
Sbjct:    60 MGCCPGGTASNILAYWVDGDMDLSISMTTCSTLLALGMMPLCLFIYTKMWVDSGTIVIPF 119

Query:   225 DAVKLSISTLQSAFPAAV-KVVTPFTPLFAVLMSSLLACSVFSENLVRLKSSVVGAALTX 283
             D +  S+  L    P ++  +V    P  A ++  L   S+    L+ L  +VVG  L  
Sbjct:   120 DNIGTSLVAL--VVPVSIGMLVNHKWPQKAKII--LKVGSITGAILIVL-IAVVGGIL-- 172

Query:   284 XXXXXXXXXXXXXGELGVIILSVLLLHFAGFFVGYLSAAICGFKEPQRRAISIEVGMQNS 343
                           +L +I     L   AG+ +G+L A I G    + R +++E GMQN+
Sbjct:   173 -----YQSAWIIAPKLWII---GTLFPLAGYSLGFLLARISGQSWHRCRTVALETGMQNT 224

Query:   344 SLGVVLATAHFT 355
              L   +    FT
Sbjct:   225 QLCSTIVQLSFT 236

GO:0016021 "integral to membrane" evidence=IEA

GO:0008508 "bile acid:sodium symporter activity" evidence=IEA

TIGR_CMR|SPO_0797 SPO_0797 "bile acid transporter family protein" [Ruegeria pomeroyi DSS-3 (taxid:246200)]

 Score = 234 (87.4 bits), Expect = 2.3e-19, P = 2.3e-19
 Identities = 74/259 (28%), Positives = 119/259 (45%)

Query:   103 PASYSLS---LGLIMLAMGLTLELKDLISLFMQRPLSILFGCAAQYTIMPTSGVIVSKFL 159
             PAS  L    L ++M ++ + L L D   L  + P  +L G  +Q+ ++P        +L
Sbjct:    13 PASLMLLNAILAVVMFSIAIDLTLDDFRRL-SRGPKPVLVGLFSQFVVLPVL-TFALVWL 70

Query:   160 GLP-PALSVGLILLSCCPGGTASNVVTLIARGDVPLSIVMTMCTTLGAVLFTPLLTKILA 218
               P P++++GLIL++ CPGG  SN +T  A G+  LS+ MT   T+GA++ TP    +  
Sbjct:    71 TAPHPSIALGLILVAACPGGNISNFITHRAGGNAALSVSMTAFATVGAIVMTPANIALWG 130

Query:   219 GTYVPVDAV--KLSISTLQSAFPAAVKVVTPFTPLFAVLMSSLLACSVFSENLVRLKSSV 276
               Y P  A+  +  I  +Q A    + ++ P      + M      +     L  L   +
Sbjct:   131 SLYPPTRAILQETHIDPVQIAITVGLMLILPLILGVTLNMRRPALTARLRRPLQLLSMGI 190

Query:   277 VGAALTXXXXXXXXXXXXXXGEL-GVIILSVLLLHFAGFFVGYLSAAICGFKEPQRRAIS 335
               A +               G + G++IL   L    G   G++ A +       RRA++
Sbjct:   191 FIAFIILALAANWGYFLSFAGAVAGLVILHNALA-LGG---GWVVATLTRLSPYDRRAVT 246

Query:   336 IEVGMQNSSLGVVLATAHF 354
             IE G+QNS LG+VL  A F
Sbjct:   247 IETGIQNSGLGLVLIFAFF 265

GO:0008508 "bile acid:sodium symporter activity" evidence=ISS

GO:0015721 "bile acid and bile salt transport" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	398
COG0385	319	COG0385, COG0385, Predicted Na+-dependent transpor	5e-55
TIGR00841	286	TIGR00841, bass, bile acid transporter	3e-52
pfam01758	188	pfam01758, SBF, Sodium Bile acid symporter family	1e-27
pfam13593	313	pfam13593, DUF4137, SBF-like CPA transporter famil	9e-06
COG0679	311	COG0679, COG0679, Predicted permeases [General fun	0.002

>gnl|CDD|223462 COG0385, COG0385, Predicted Na+-dependent transporter [General function prediction only]

 Score =  183 bits (468), Expect = 5e-55
 Identities = 107/320 (33%), Positives = 161/320 (50%), Gaps = 41/320 (12%)

Query: 76  LYPLYVTVGGVIACLKPSAFGWFVQRGPASYSLSLGLIMLAMGLTLELKDLISLFMQRPL 135
           ++ L+V +   IA + P  FGW    G A   ++L LIM  MGLTL  +D ++  ++ P 
Sbjct: 14  IFLLWVVLLAAIAPIFPETFGWL---GSAIP-IALALIMFGMGLTLSREDFLAG-LKHPR 68

Query: 136 SILFGCAAQYTIMPTSGVIVSKFLGLPPALSVGLILLSCCPGGTASNVVTLIARGDVPLS 195
            +L G AAQ+ +MP   ++++K   LPP L+VGL+LL CCPGG ASN +T +A+G+V LS
Sbjct: 69  LVLIGLAAQFVLMPLLALLLAKLFPLPPELAVGLLLLGCCPGGVASNAMTYLAKGNVALS 128

Query: 196 IVMTMCTTLGAVLFTPLLTKILAGTYVPVDAVKLSISTLQS-------------AFPAAV 242
           +  T  +TL     TPLL  +LAG  VPVD   + +S L                 P  V
Sbjct: 129 VCSTSVSTLLGPFLTPLLVGLLAGGGVPVDVGGMFLSILLQVLLPFVLGQLLRPLLPKWV 188

Query: 243 KVVTPFTPLFAVLMSSLLACSVFSENLVRLKSSVVGAALTSDLSLISRIKSILSGELGVI 302
           + +    P  +VL   L+  + FS  +     S +                       +I
Sbjct: 189 ERLKKALPPVSVLSILLIVYAAFSAAVENGIWSGL-----------------------LI 225

Query: 303 ILSVLLLHFAGFFVGYLSAAICGFKEPQRRAISIEVGMQNSSLGVVLATAHFTSSMVALP 362
            ++V+L +  G  +GY  A + GF +     I+IE GMQN  LG  LA A F + ++ALP
Sbjct: 226 FVAVILHNLLGLLLGYFGARLLGFDKADEITIAIEGGMQNLGLGAALAAAFFGNPLMALP 285

Query: 363 PAMSAVIMNIMGSTLGFFWR 382
            A+ +V  N+ G+ L   + 
Sbjct: 286 LAIFSVWQNMSGAVLAGLYA 305

Length = 319

>gnl|CDD|188087 TIGR00841, bass, bile acid transporter

 Score =  175 bits (447), Expect = 3e-52
 Identities = 98/279 (35%), Positives = 148/279 (53%), Gaps = 22/279 (7%)

Query: 110 LGLIMLAMGLTLELKDLISLFMQRPLSILFGCAAQYTIMPTSGVIVSKFLGLPPALSVGL 169
           L LIM +MG TLE +D     +++P  ++ G  AQY IMP +G +++K   LPP L+VG+
Sbjct: 14  LFLIMFSMGCTLEFEDFKGH-LRKPWGVIIGLLAQYGIMPLTGFLLAKVFKLPPELAVGV 72

Query: 170 ILLSCCPGGTASNVVTLIARGDVPLSIVMTMCTTLGAVLFTPLLTKILAGTYVP----VD 225
           +++ CCPGGTASNV T + +GD+ LSI MT C+TL A+   PLL  I A  +V     V 
Sbjct: 73  LIVGCCPGGTASNVFTYLLKGDMALSISMTTCSTLLALGMMPLLLYIYAKMWVDGTLVVP 132

Query: 226 AVKLSISTLQSAFPAAVKV-VTPFTPLFAVLMSSLLACSVFSENLVRLKSSVVGAALTSD 284
            + + +S +    P ++ + V    P  A ++  +   SVF               L+  
Sbjct: 133 YLGIGLSLVIVLIPVSIGMLVKHKLPQIAKIILKVGLISVFL--------------LSVI 178

Query: 285 LSLISRIKSILSGELGVIILSV-LLLHFAGFFVGYLSAAICGFKEPQRRAISIEVGMQNS 343
           ++++  I       +G ++L V +LL  AGF +GYL A + G    + R ISIEVGMQNS
Sbjct: 179 IAVVGGINVENLATIGPLLLLVGILLPLAGFLLGYLLAKLAGLPWARCRTISIEVGMQNS 238

Query: 344 SLGVVLATAHFTSSMVALPPAMSAVIMNIMGSTLGFFWR 382
            L   +A   F S  VA+P A+  +I  +        + 
Sbjct: 239 QLCSTIAQLSF-SPEVAVPSAIFPLIYALFQLAFALLFL 276

The Bile Acid:Na+ Symporter (BASS) Family (TC 2.A.28) Functionally characterized members of the BASS family catalyze Na+:bile acid symport. These systems have been identified in intestinal, liver and kidney tissues of animals. These symporters exhibit broad specificity, taking up a variety of non bile organic compounds as well as taurocholate and other bile salts. Functionally uncharacterised homologues are found in plants, yeast, archaea and bacteria [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 286

>gnl|CDD|216683 pfam01758, SBF, Sodium Bile acid symporter family

 Score =  107 bits (269), Expect = 1e-27
 Identities = 60/143 (41%), Positives = 85/143 (59%), Gaps = 5/143 (3%)

Query: 108 LSLGLIMLAMGLTLELKDLISLFMQRPLSILFGCAAQYTIMPTSGVIVS-KFLGLPPALS 166
           L L L+M +MGL +  +D   LF +RP ++L G   Q+ IMP    I++   L LPP L+
Sbjct: 2   LGLFLMMFSMGLKVRYEDFKELF-RRPKALLLGLLLQWVIMPLLMFILAWFLLRLPPELA 60

Query: 167 VGLILLSCCPGGTASNVVTLIARGDVPLSIVMTMCTTLGAVLFTPLLTKILAGTYVPVDA 226
           VGLIL+ C PGG  SNV T +A+GDV LS+VM   +TL A L TPLL+ +L+G  + V  
Sbjct: 61  VGLILVGCAPGGAMSNVWTYLAKGDVELSVVMVALSTLTAPLVTPLLSFLLSGLLLDVGT 120

Query: 227 VKLSISTLQSAFPAAVKVVTPFT 249
               +S ++S     + V+ P  
Sbjct: 121 AVSPLSLIKSVL---IYVIIPLI 140

This family consists of Na+/bile acid co-transporters. These transmembrane proteins function in the liver in the uptake of bile acids from portal blood plasma a process mediated by the co-transport of Na+. Also in the family is ARC3 from S. cerevisiae, this is a putative transmembrane protein involved in resistance to arsenic compounds. Length = 188

>gnl|CDD|222249 pfam13593, DUF4137, SBF-like CPA transporter family (DUF4137)

 Score = 46.8 bits (112), Expect = 9e-06
 Identities = 70/259 (27%), Positives = 103/259 (39%), Gaps = 31/259 (11%)

Query: 111 GLIMLAMGLTLELKDLISLFMQRPLSILFGCAAQYTIMPTSGVIVSKFLG--LPPALSVG 168
            LI    GL L  ++L++      L  LF     + + P  G+ +S  L   LPP L +G
Sbjct: 38  ALIFFLSGLKLSTEELLAGLRNWRL-HLFVQLFTFVLFPLLGLGLSPLLPAALPPELLLG 96

Query: 169 LILLSCCPGGTASNVV-TLIARGDVPLSIVMTMCTTLGAVLFTPLLTKILAGT---YVPV 224
            + L+  P   +S+V  T  A G+V  ++     + L  V  TPLL  +L G     V +
Sbjct: 97  FLFLAALPTTVSSSVAMTSQAGGNVAAAVCSASISNLLGVFLTPLLVGLLLGGGGGGVDL 156

Query: 225 DAV--KLSISTL------QSAFPAAVKVVTPFTPLFAVLMSSLLACSVFSENLVRLKSSV 276
            AV  KL +  L      Q   P   K V     L   +  S +   V+        ++ 
Sbjct: 157 GAVLKKLLLQLLLPFVLGQLLRPLFPKWVARHKKLLKKVDRSSILLIVY----TAFSTAF 212

Query: 277 VGAALTSDLSLISRIKSILSGELGVIILSVLLLHFAGFFVGYLSAAICGFKEPQRRAISI 336
           V               S+    L VI    LLL F    +   +A + GF    R AI +
Sbjct: 213 VEGIWH----------SVSHSILLVIFALGLLLLFVVLVLTTFAARLLGFSREDRIAI-L 261

Query: 337 EVGMQNS-SLGVVLATAHF 354
             G + S +LGV LA+  F
Sbjct: 262 FCGSKKSLALGVPLASVLF 280

These family members are membrane transporter proteins of the CPA and AT superfamily. Length = 313

>gnl|CDD|223751 COG0679, COG0679, Predicted permeases [General function prediction only]

 Score = 39.6 bits (93), Expect = 0.002
 Identities = 32/115 (27%), Positives = 55/115 (47%), Gaps = 3/115 (2%)

Query: 107 SLSLGLIMLAMGLTLELKDLISLFMQRPLSILFGCAAQYTIMPTSGVIVSKFLGLPPALS 166
           S +  L ++A+GL+L     + L   +P  IL   + +  + P   ++V+K LGL     
Sbjct: 200 SAASPLALIALGLSL---AFLKLKGSKPPIILIALSLKLLLAPLVALLVAKLLGLSGLAL 256

Query: 167 VGLILLSCCPGGTASNVVTLIARGDVPLSIVMTMCTTLGAVLFTPLLTKILAGTY 221
             L+LLS  P    + V+     GD  L+    + +TL ++L  PLL  +L  + 
Sbjct: 257 QVLVLLSAMPTAVNAYVLARQYGGDPRLAASTILLSTLLSLLTLPLLILLLLRSL 311

Length = 311

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	398
COG0385	319	Predicted Na+-dependent transporter [General funct	100.0
TIGR00832	328	acr3 arsenical-resistance protein. The first prote	100.0
TIGR00841	286	bass bile acid transporter. Functionally character	100.0
PF13593	313	DUF4137: SBF-like CPA transporter family (DUF4137)	100.0
COG0798	342	ACR3 Arsenite efflux pump ACR3 and related permeas	100.0
PF01758	187	SBF: Sodium Bile acid symporter family; InterPro:	99.93
KOG2718	371	consensus Na+-bile acid cotransporter [Inorganic i	99.91
TIGR00946	321	2a69 he Auxin Efflux Carrier (AEC) Family.	99.32
PRK09903	314	putative transporter YfdV; Provisional	99.28
COG0679	311	Predicted permeases [General function prediction o	99.16
PF03547	385	Mem_trans: Membrane transport protein; InterPro: I	98.92
KOG4821	287	consensus Predicted Na+-dependent cotransporter [G	98.79
PRK12460	312	2-keto-3-deoxygluconate permease; Provisional	98.15
PF03812	314	KdgT: 2-keto-3-deoxygluconate permease; InterPro:	97.4
PF05145	318	AmoA: Putative ammonia monooxygenase; InterPro: IP	97.38
KOG2718	371	consensus Na+-bile acid cotransporter [Inorganic i	97.29
TIGR00793	314	kdgT 2-keto-3-deoxygluconate transporter. This fam	97.16
PRK03562	621	glutathione-regulated potassium-efflux system prot	97.01
COG0475	397	KefB Kef-type K+ transport systems, membrane compo	96.89
PLN03159	832	cation/H(+) antiporter 15; Provisional	96.76
PRK03659	601	glutathione-regulated potassium-efflux system prot	96.72
TIGR03082	156	Gneg_AbrB_dup membrane protein AbrB duplication. T	96.57
PRK05274	326	2-keto-3-deoxygluconate permease; Provisional	96.32
PRK10669	558	putative cation:proton antiport protein; Provision	95.7
PRK04288	232	antiholin-like protein LrgB; Provisional	95.53
PRK10711	231	hypothetical protein; Provisional	95.46
TIGR00659	226	conserved hypothetical protein TIGR00659. Members	95.4
PF03547	385	Mem_trans: Membrane transport protein; InterPro: I	95.33
PF04172	215	LrgB: LrgB-like family ; InterPro: IPR007300 The t	95.26
PRK12460	312	2-keto-3-deoxygluconate permease; Provisional	94.61
COG3180	352	AbrB Putative ammonia monooxygenase [General funct	94.55
PF05145	318	AmoA: Putative ammonia monooxygenase; InterPro: IP	94.37
COG1346	230	LrgB Putative effector of murein hydrolase [Cell e	94.09
PRK05326	562	potassium/proton antiporter; Reviewed	93.45
PF03601	305	Cons_hypoth698: Conserved hypothetical protein 698	92.86
COG3180	352	AbrB Putative ammonia monooxygenase [General funct	91.8
COG2855	334	Predicted membrane protein [Function unknown]	91.57
KOG2722	408	consensus Predicted membrane protein [Function unk	90.04
TIGR00698	335	conserved hypothetical integral membrane protein.	89.84
PRK05274	326	2-keto-3-deoxygluconate permease; Provisional	87.67
PF05684	378	DUF819: Protein of unknown function (DUF819); Inte	86.72
COG4651	408	RosB Kef-type K+ transport system, predicted NAD-b	86.51
TIGR00932	273	2a37 transporter, monovalent cation:proton antipor	83.35
PRK10711	231	hypothetical protein; Provisional	82.97
PF04172	215	LrgB: LrgB-like family ; InterPro: IPR007300 The t	82.3
COG1346	230	LrgB Putative effector of murein hydrolase [Cell e	81.98
TIGR00659	226	conserved hypothetical protein TIGR00659. Members	81.84
PF03812	314	KdgT: 2-keto-3-deoxygluconate permease; InterPro:	80.89
PRK04288	232	antiholin-like protein LrgB; Provisional	80.47
TIGR00844	810	c_cpa1 na(+)/h(+) antiporter. This model is specif	80.4

>COG0385 Predicted Na+-dependent transporter [General function prediction only]

Probab=100.00  E-value=2.6e-50  Score=390.17  Aligned_cols=289  Identities=36%  Similarity=0.600  Sum_probs=266.6

Q ss_pred             hhHHHHHHHHHHHHHhhcccccchhhhccchhHHHHHHHHHHHHcccCChHHHHHHHhcCchHHHHHHHHHHHHHHHHHH
Q 015929           74 ASLYPLYVTVGGVIACLKPSAFGWFVQRGPASYSLSLGLIMLAMGLTLELKDLISLFMQRPLSILFGCAAQYTIMPTSGV  153 (398)
Q Consensus        74 ~~~~p~~i~~~~llgl~~P~~~~~~~~~~~~~~~~~l~~~mf~~Gl~l~~~~l~~~~~~~p~~l~~~l~~~~vl~Pll~~  153 (398)
                      .+.+++|+.+.+.++...|+.+.+++.    .+..+++++||.+|++++.+|+++.. +|||.+++++++||++||++++
T Consensus        12 ~~~~~~~~v~~a~~~~~~~~~~~~~~~----~~~~~l~lImf~mGl~Ls~~d~~~~~-~~p~~vligl~~qfvlmPlla~   86 (319)
T COG0385          12 FKIFLLWVVLLAAIAPIFPETFGWLGS----AIPIALALIMFGMGLTLSREDFLAGL-KHPRLVLIGLAAQFVLMPLLAL   86 (319)
T ss_pred             HHHHHHHHHHHHHHHHhccccchhhhH----HHHHHHHHHHHhcCCCCCHHHHHHhh-cchHHHHHHHHHHHHHHHHHHH
Confidence            556899999999999999999998874    46789999999999999999999998 8999999999999999999999


Q ss_pred             HHHHHcCCChhHHHHHHHHccCchhhHHHHHHHHhCCChhhHHHHHHHHHHHHHhHHHHHHHHHhCcccccChHHHHHHH
Q 015929          154 IVSKFLGLPPALSVGLILLSCCPGGTASNVVTLIARGDVPLSIVMTMCTTLGAVLFTPLLTKILAGTYVPVDAVKLSIST  233 (398)
Q Consensus       154 ~l~~l~~l~~~~~~gl~l~~~~P~~~~s~v~t~~a~Gd~~la~~l~~lstlla~~~~Pl~l~ll~g~~v~vd~~~~~l~l  233 (398)
                      ++++++++|++++.|+++++|||+|+.||+||+++|||+++++.++.+||+++++++|+++.++.|+++++|.++++.++
T Consensus        87 ~~~~~~~l~~~l~~Gl~ll~~~Pggv~S~~~t~lAkGnValsV~~tsvStll~~f~tPllv~l~~~~~v~~~~~~m~~~i  166 (319)
T COG0385          87 LLAKLFPLPPELAVGLLLLGCCPGGVASNAMTYLAKGNVALSVCSTSVSTLLGPFLTPLLVGLLAGGGVPVDVGGMFLSI  166 (319)
T ss_pred             HHHHHcCCCHHHHHhHHheeeCCCchhHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999887664


Q ss_pred             -------------HHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhhhhHHhhhhhhhhhhcchhhhHHHHhhhhhhhHH
Q 015929          234 -------------LQSAFPAAVKVVTPFTPLFAVLMSSLLACSVFSENLVRLKSSVVGAALTSDLSLISRIKSILSGELG  300 (398)
Q Consensus       234 -------------lr~~~p~~~~~i~~~~~~is~~~llliv~~v~a~n~~~i~~~i~~~~~~~~~~~~~~~~~~l~~~~~  300 (398)
                                   +|++.|++.++.++.++.++..+++++++..++.+.+++.++                      . .
T Consensus       167 ~~~vllP~~LG~~~r~~~~~~~~~~~~~l~~vs~~~illIv~~~~s~~~~~~~~~----------------------~-~  223 (319)
T COG0385         167 LLQVLLPFVLGQLLRPLLPKWVERLKKALPPVSVLSILLIVYAAFSAAVENGIWS----------------------G-L  223 (319)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHhhhHH----------------------H-H
Confidence                         289999999999999999999999999999999888765431                      1 2


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhCCCcchhHHHhhhhhcchhHHHHHHHHHhcCCccchHHHHHHHHHHHHHHHHHHHH
Q 015929          301 VIILSVLLLHFAGFFVGYLSAAICGFKEPQRRAISIEVGMQNSSLGVVLATAHFTSSMVALPPAMSAVIMNIMGSTLGFF  380 (398)
Q Consensus       301 ~i~l~~~ll~~~~f~~G~~lar~~gl~~~~~~al~~~~g~rN~~Lai~lA~~~f~~p~~alp~~i~~l~q~i~~s~la~~  380 (398)
                      .+.+.+++++.++|..||+.+|++|+|++|++|++||+|+||.++|+++|..||++|.+++|.++|++||++.+++++++
T Consensus       224 ~v~~~v~~~n~lg~~~gy~~ar~~g~~~a~~iti~ie~g~qn~~lg~alA~~f~~~~~~alP~aif~~~q~~~~a~la~~  303 (319)
T COG0385         224 LIFVAVILHNLLGLLLGYFGARLLGFDKADEITIAIEGGMQNLGLGAALAAAFFGNPLMALPLAIFSVWQNMSGAVLAGL  303 (319)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCChhheeeEEEeeccccHHHHHHHHHhcCCCchhHhHHHHHHHHHHHHHHHHHHH
Confidence            46677788889999999999999999999999999999999999999999997755999999999999999999999999


Q ss_pred             HhccCCCCCC
Q 015929          381 WRYIDPSDSK  390 (398)
Q Consensus       381 ~~~~~~~~~~  390 (398)
                      |+||+.++.|
T Consensus       304 ~~~~~~~~~~  313 (319)
T COG0385         304 YARRILKAAE  313 (319)
T ss_pred             HHhccccccc
Confidence            9998755543

>TIGR00832 acr3 arsenical-resistance protein

Probab=100.00  E-value=1.5e-40  Score=329.12  Aligned_cols=278  Identities=17%  Similarity=0.187  Sum_probs=228.9

Q ss_pred             hhHHHHHHHHHHHHHhhcccccchhhhcc----chhHHHHHHHHHHHHcccCChHHHHHHHhcCchHHHHHHHHHHHHHH
Q 015929           74 ASLYPLYVTVGGVIACLKPSAFGWFVQRG----PASYSLSLGLIMLAMGLTLELKDLISLFMQRPLSILFGCAAQYTIMP  149 (398)
Q Consensus        74 ~~~~p~~i~~~~llgl~~P~~~~~~~~~~----~~~~~~~l~~~mf~~Gl~l~~~~l~~~~~~~p~~l~~~l~~~~vl~P  149 (398)
                      ..+..+.+.++.++|+..|+.+.+.+...    .......+.++||++|++++.+|+++.+ ||||.+..+++.|++++|
T Consensus         9 ~~~~~~~~i~~~~~g~~~P~~~~~~~~~~~~~~~~~~~~~l~~mmf~mgl~L~~~df~~~~-~~pk~~~~~~~~qfvi~P   87 (328)
T TIGR00832         9 TLWIFLAIAAGVGLGVLFPSVFQALAALEVATVSIPIAIGLILMMYPPLAKVDYSALGDVF-KDPKGLILSLFINWIIGP   87 (328)
T ss_pred             HHHHHHHHHHHHHHHHhccccHHHHHHHHhhhhHHHHHHHHHHHHHHhhhcCCHHHHHHHH-cCchHHHHHHHHHHHHHH
Confidence            33444555556689999999888775421    1113456778999999999999999998 899999999999999999


Q ss_pred             HHHHHHHHHc-CCChhHHHHHHHHccCchhhHHHHHHHHhCCChhhHHHHHHHHHHHHHhHHHHHHHHHhC--------c
Q 015929          150 TSGVIVSKFL-GLPPALSVGLILLSCCPGGTASNVVTLIARGDVPLSIVMTMCTTLGAVLFTPLLTKILAG--------T  220 (398)
Q Consensus       150 ll~~~l~~l~-~l~~~~~~gl~l~~~~P~~~~s~v~t~~a~Gd~~la~~l~~lstlla~~~~Pl~l~ll~g--------~  220 (398)
                      +++|++++++ +++++++.|+++++|||||++|++||+++|||+++++.+|.+||+++++++|.++.++.|        +
T Consensus        88 lla~~l~~l~~~~~p~l~~GliLv~~~Pgg~~S~v~T~lAkGnvalsv~lt~~stLl~~~~~P~l~~ll~~~~~~~~~~~  167 (328)
T TIGR00832        88 FLMFLLAWLFLRDLFEYIAGLILLGLARCIAMVFVWNQLAKGDPEYTLVLVAVNSLFQVFLYAPLAWLLLGVSPIWLGLT  167 (328)
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHhcchHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccc
Confidence            9999999975 999999999999999999999999999999999999999999999999999999998876        3


Q ss_pred             ccccChHHHHHHH-------------HHHHHHH-----HHH-HhcccchhHHHHHHHHHHHHHHhhhhHHhhhhhhhhhh
Q 015929          221 YVPVDAVKLSIST-------------LQSAFPA-----AVK-VVTPFTPLFAVLMSSLLACSVFSENLVRLKSSVVGAAL  281 (398)
Q Consensus       221 ~v~vd~~~~~l~l-------------lr~~~p~-----~~~-~i~~~~~~is~~~llliv~~v~a~n~~~i~~~i~~~~~  281 (398)
                      ++++|.++++.++             +|++.++     +.+ +..+..+.++.+++++++...++.|.+.+.+.      
T Consensus       168 ~v~v~~~~~~~~l~~~v~lPlvlG~~lr~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~iv~~~~~~~~~~i~~~------  241 (328)
T TIGR00832       168 VITVPWETIAKSVLIYLGIPLIAGILTRYWLLKRKGREWYEKVFLPKISPWSLIALLFTIVLLFAFQGETIIEL------  241 (328)
T ss_pred             eeeeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhC------
Confidence            4688988877654             2788774     333 67777888888888888888888887765431      


Q ss_pred             cchhhhHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcchhHHHhhhhhcchhHHHHHHHHHhcCCc-cch
Q 015929          282 TSDLSLISRIKSILSGELGVIILSVLLLHFAGFFVGYLSAAICGFKEPQRRAISIEVGMQNSSLGVVLATAHFTSS-MVA  360 (398)
Q Consensus       282 ~~~~~~~~~~~~~l~~~~~~i~l~~~ll~~~~f~~G~~lar~~gl~~~~~~al~~~~g~rN~~Lai~lA~~~f~~p-~~a  360 (398)
                                    .+....+..++++++.++|.+||+++|.+|++++|+||+++|+|+||.++|+++|.++|+++ ..+
T Consensus       242 --------------~~~i~~~~~~v~l~~~~~~~lg~~~~r~~~l~~~~~~a~~~e~g~qN~~lai~lA~~~f~~~~~~a  307 (328)
T TIGR00832       242 --------------PLDIALIAIPLLIYFYIMFFLTFALAKKLGLPYSITAPAAFTGASNNFELAIAVAISLFGLNSGAA  307 (328)
T ss_pred             --------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChhhhhhheehhhhhhHHHHHHHHHHhCCCCcccH
Confidence                          11233455677789999999999999999999999999999999999999999999999864 455


Q ss_pred             HHHHHHHHHHHH
Q 015929          361 LPPAMSAVIMNI  372 (398)
Q Consensus       361 lp~~i~~l~q~i  372 (398)
                      .+.++..++|..
T Consensus       308 ~~~~~~~l~e~~  319 (328)
T TIGR00832       308 LATVVGPLIEVP  319 (328)
T ss_pred             HHHHhhhhhehh
Confidence            555555555544

The first protein of the ACR3 family functionally characterized was the ACR3 protein of Saccharomyces cerevisiae. It is present in the yeast plasma membrane and pumps arsenite out of the cell in response to the pmf. Similar proteins are found in bacteria, often as part of a four gene operon with an regulatory protein ArsR, a protein of unknown function ArsH, and an arsenate reductase that converts arsenate to arsenite to facilitate transport.

>TIGR00841 bass bile acid transporter

Probab=100.00  E-value=6.4e-40  Score=319.32  Aligned_cols=260  Identities=37%  Similarity=0.604  Sum_probs=232.1

Q ss_pred             hHHHHHHHHHHHHcccCChHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHccCchhhHHHHH
Q 015929          105 SYSLSLGLIMLAMGLTLELKDLISLFMQRPLSILFGCAAQYTIMPTSGVIVSKFLGLPPALSVGLILLSCCPGGTASNVV  184 (398)
Q Consensus       105 ~~~~~l~~~mf~~Gl~l~~~~l~~~~~~~p~~l~~~l~~~~vl~Pll~~~l~~l~~l~~~~~~gl~l~~~~P~~~~s~v~  184 (398)
                      .+.+.++++||.+|++++.+|+++.+ +|||.+..+++.|++++|+++|+++++++++++++.|+++++||||+.++++|
T Consensus         9 ~~~~~l~~~m~~~G~~l~~~~~~~~~-~~p~~~~~~~~~~~vi~Plla~~l~~~~~l~~~~~~glvL~~~~P~~~~s~v~   87 (286)
T TIGR00841         9 ILLILLFLIMFSMGCTLEFEDFKGHL-RKPWGVIIGLLAQYGIMPLTGFLLAKVFKLPPELAVGVLIVGCCPGGTASNVF   87 (286)
T ss_pred             HHHHHHHHHHHHccCCCcHHHHHHHH-hCchHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHheeeCCCchHHHHH
Confidence            45567999999999999999999998 89999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhCCChhhHHHHHHHHHHHHHhHHHHHHHHHhCcccc----cChHHHHHHH------------HHHHHHHHHHHhccc
Q 015929          185 TLIARGDVPLSIVMTMCTTLGAVLFTPLLTKILAGTYVP----VDAVKLSIST------------LQSAFPAAVKVVTPF  248 (398)
Q Consensus       185 t~~a~Gd~~la~~l~~lstlla~~~~Pl~l~ll~g~~v~----vd~~~~~l~l------------lr~~~p~~~~~i~~~  248 (398)
                      |+++|||.++++.++.++|+++++++|+++.++.+.+.+    +|+++++.++            +|++.|+..++.++ 
T Consensus        88 t~~~~gn~~la~~~~~~stlls~vt~Pl~l~~~~~~~~~~~~~v~~~~i~~~~~~v~vPl~lG~~~r~~~p~~~~~~~~-  166 (286)
T TIGR00841        88 TYLLKGDMALSISMTTCSTLLALGMMPLLLYIYAKMWVDGTLVVPYLGIGLSLVAVLIPVSIGMLVKHKLPQIAKIILK-  166 (286)
T ss_pred             HHHhCCCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceecHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHh-
Confidence            999999999999999999999999999999999876555    8887776542            28888998888888 


Q ss_pred             chhHHHHHHHHHHHHHHhhhhHHhhhhhhhhhhcchhhhHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhCCCc
Q 015929          249 TPLFAVLMSSLLACSVFSENLVRLKSSVVGAALTSDLSLISRIKSILSGELGVIILSVLLLHFAGFFVGYLSAAICGFKE  328 (398)
Q Consensus       249 ~~~is~~~llliv~~v~a~n~~~i~~~i~~~~~~~~~~~~~~~~~~l~~~~~~i~l~~~ll~~~~f~~G~~lar~~gl~~  328 (398)
                      .+.++.+.+.+++..+++.|.+.+.+                       +.+.++++++++++++|.+||+.+|.+|+++
T Consensus       167 ~~~~s~~~l~liv~~~~~~~~~~i~~-----------------------~~~~~~~~~~ll~~~~~~~g~~~a~~~~l~~  223 (286)
T TIGR00841       167 VGLISVFLLSVIIAVVGGINVENLAT-----------------------IGPLLLLVGILLPLAGFLLGYLLAKLAGLPW  223 (286)
T ss_pred             CchHHHHHHHHHHHHHHHhhHHHHHH-----------------------hhHHHHHHHHHHHHHHHHHHHHHHHHhCCCH
Confidence            88899888888877777777665432                       1234667788899999999999999999999


Q ss_pred             chhHHHhhhhhcchhHHHHHHHHHhcCCccchHHHHHHHHHHHHHHHHHHHHHhccCCCCCC
Q 015929          329 PQRRAISIEVGMQNSSLGVVLATAHFTSSMVALPPAMSAVIMNIMGSTLGFFWRYIDPSDSK  390 (398)
Q Consensus       329 ~~~~al~~~~g~rN~~Lai~lA~~~f~~p~~alp~~i~~l~q~i~~s~la~~~~~~~~~~~~  390 (398)
                      +|+|++++|+|+||+++|+++|.++|+ |+.++|.++|.++|++.+..++.+|+|+....+|
T Consensus       224 ~~~~t~~~~~g~qN~~lal~la~~~f~-~~~a~~~~~~~v~~~~~~~~~a~~~~~~~~~~~~  284 (286)
T TIGR00841       224 ARCRTISIEVGMQNSQLCSTIAQLSFS-PEVAVPSAIFPLIYALFQLAFALLFLIIHFCYLK  284 (286)
T ss_pred             hhheeeeeeeecccHHHHHHHHHHhcC-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            999999999999999999999999996 8899999999999999999999999887655443

Functionally characterized members of the BASS family catalyze Na+:bile acid symport. These systems have been identified in intestinal, liver and kidney tissues of animals. These symporters exhibit broad specificity, taking up a variety of non bile organic compounds as well as taurocholate and other bile salts. Functionally uncharacterised homologues are found in plants, yeast, archaea and bacteria.

>PF13593 DUF4137: SBF-like CPA transporter family (DUF4137)

Probab=100.00  E-value=5.1e-36  Score=295.06  Aligned_cols=289  Identities=27%  Similarity=0.374  Sum_probs=251.1

Q ss_pred             HHHHHHHHHHHHHhhcccccchhhhccc-hhHHHHHHHHHHHHcccCChHHHHHHHhcCchHHHHHHHHHHHHHHHHHHH
Q 015929           76 LYPLYVTVGGVIACLKPSAFGWFVQRGP-ASYSLSLGLIMLAMGLTLELKDLISLFMQRPLSILFGCAAQYTIMPTSGVI  154 (398)
Q Consensus        76 ~~p~~i~~~~llgl~~P~~~~~~~~~~~-~~~~~~l~~~mf~~Gl~l~~~~l~~~~~~~p~~l~~~l~~~~vl~Pll~~~  154 (398)
                      ++++.+.+++++|+.+|+.+...+...+ +....++++++|..|++++.+|+++.+ +|+|.++.++..+|+++|+++++
T Consensus         2 ~fl~~l~~ai~la~~~P~~g~~~~~~~~~~~~~~~v~~iFf~~Gl~L~~~~l~~~~-~~~~~~l~~~~~~fvl~Pll~~~   80 (313)
T PF13593_consen    2 WFLLGLLLAILLAYLFPAPGAAGGVIKPEYVIKYGVALIFFISGLSLPTEELKAAL-RNWRLHLFVQAFNFVLFPLLGFG   80 (313)
T ss_pred             chHHHHHHHHHHHHHcCcccccCCccchhhhHHHHHHHHHHHHcCCCCHHHHHHHH-hcchHHHHHHHHHHHHHHHHHHH
Confidence            5889999999999999998875544321 245778999999999999999999998 89999999999999999999999


Q ss_pred             HHHHc--CCChhHHHHHHHHccCchhhHHH-HHHHHhCCChhhHHHHHHHHHHHHHhHHHHHHHHHh-CcccccChHHHH
Q 015929          155 VSKFL--GLPPALSVGLILLSCCPGGTASN-VVTLIARGDVPLSIVMTMCTTLGAVLFTPLLTKILA-GTYVPVDAVKLS  230 (398)
Q Consensus       155 l~~l~--~l~~~~~~gl~l~~~~P~~~~s~-v~t~~a~Gd~~la~~l~~lstlla~~~~Pl~l~ll~-g~~v~vd~~~~~  230 (398)
                      +.+++  .++++++.|+++++|+||+..|+ +||+++|||+++++.++.++|+++++++|+++.++. ++..++|..+++
T Consensus        81 ~~~l~~~~~~~~l~~Gl~~~~~lPtTv~S~v~~T~~AgGN~a~Al~~~~~snllgv~ltP~ll~l~l~~~~~~~~~~~~~  160 (313)
T PF13593_consen   81 LSRLFPAFLPPELALGLLILACLPTTVSSSVVLTRLAGGNVALALFNAVLSNLLGVFLTPLLLLLLLGGSSVSIDYASVL  160 (313)
T ss_pred             HHHHhhccCCHHHHHHHHHHhhCCchhhHHHHHHHHcCCCHHHHHHHHHHHhhhhHhHHHHHHHHHhcCCcCCCCHHHHH
Confidence            99988  46899999999999999998777 799999999999999999999999999999999999 677888887765


Q ss_pred             HHH-------------HHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhhhhHHh-hhhhhhhhhcchhhhHHHHhhhhh
Q 015929          231 IST-------------LQSAFPAAVKVVTPFTPLFAVLMSSLLACSVFSENLVRL-KSSVVGAALTSDLSLISRIKSILS  296 (398)
Q Consensus       231 l~l-------------lr~~~p~~~~~i~~~~~~is~~~llliv~~v~a~n~~~i-~~~i~~~~~~~~~~~~~~~~~~l~  296 (398)
                      .++             +|++.+++.+|.++..+.++..+++++++..++.+..+- .++                  .-.
T Consensus       161 ~~L~~~vllP~~~Gq~~r~~~~~~~~~~~~~~~~~~~~~ll~iv~~~fs~~~~~~~~~~------------------~~~  222 (313)
T PF13593_consen  161 IKLVLTVLLPLVLGQLLRRWVPKWVARHKKPLSLLSQLALLLIVYSAFSSAFAQGAWHS------------------VSA  222 (313)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhh------------------CCH
Confidence            443             399999999999999999999999999999988764321 110                  001


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcchhHHHhhhhhcchhHHHHHHHHHhcCC----ccchHHHHHHHHHHHH
Q 015929          297 GELGVIILSVLLLHFAGFFVGYLSAAICGFKEPQRRAISIEVGMQNSSLGVVLATAHFTS----SMVALPPAMSAVIMNI  372 (398)
Q Consensus       297 ~~~~~i~l~~~ll~~~~f~~G~~lar~~gl~~~~~~al~~~~g~rN~~Lai~lA~~~f~~----p~~alp~~i~~l~q~i  372 (398)
                      .....+....+.+|...+.++|+.+|.+|++++|++|+.||+++||.++|++++...|++    +.+.+|.++||..|.+
T Consensus       223 ~~~~~~~~~~~~l~~~~l~~~~~~~r~~~~~~~d~iA~~F~gs~Ksl~~gvpl~~~lf~~~~~~~~~~lP~~iyh~~Ql~  302 (313)
T PF13593_consen  223 AALALIVAVSLLLLLVVLVLGWLAARLLGFSRPDRIAVLFCGSQKSLALGVPLASILFPGHPDLGLIVLPLMIYHPLQLF  302 (313)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhhEEEEEEEcCcCcchhHHHHHHHHcccccccchhhhHHHHHHHHHHH
Confidence            123345666778899999999999999999999999999999999999999999999975    3789999999999999


Q ss_pred             HHHHHHHHHhc
Q 015929          373 MGSTLGFFWRY  383 (398)
Q Consensus       373 ~~s~la~~~~~  383 (398)
                      ++++++..|+|
T Consensus       303 ~~s~la~~~~r  313 (313)
T PF13593_consen  303 VGSFLASRLAR  313 (313)
T ss_pred             HHHHHHHHHcC
Confidence            99999999986

>COG0798 ACR3 Arsenite efflux pump ACR3 and related permeases [Inorganic ion transport and metabolism]

Probab=100.00  E-value=1.2e-31  Score=259.30  Aligned_cols=310  Identities=19%  Similarity=0.205  Sum_probs=259.7

Q ss_pred             hHHHHHHHHHHhhHHHHHHHHHH----HHHhhcccccchhhhc----cchhHHHHHHHHHHHHcccCChHHHHHHHhcCc
Q 015929           63 KPRWEYLLSTAASLYPLYVTVGG----VIACLKPSAFGWFVQR----GPASYSLSLGLIMLAMGLTLELKDLISLFMQRP  134 (398)
Q Consensus        63 ~~~~~~~l~~l~~~~p~~i~~~~----llgl~~P~~~~~~~~~----~~~~~~~~l~~~mf~~Gl~l~~~~l~~~~~~~p  134 (398)
                      +.++.|.+++++++++.|+.+++    .+|..+|+.....+..    .+..+.+++.+||+.+.++++++++++.+ +++
T Consensus         2 ~~~~~k~l~~~dk~l~~wv~l~i~~Gi~lG~~~p~~~~~l~~~~~~~~sipiai~L~~MmYP~m~ki~~~~~~~v~-k~~   80 (342)
T COG0798           2 KMKEKKKLSFLDKYLTLWVFLAIAIGILLGVHFPGLAQLLGKLEFGGVSIPIAIGLILMMYPPMLKIDFEELKNVF-KDP   80 (342)
T ss_pred             chhHhhhhhHHHHHHHHHHHHHHHHHHHHHhcccchhhhcccceeCceehhHHHHHHHHHhHHHhcCCHHHHHHHH-hcc
Confidence            34567788888888888877666    5666778854444321    23357899999999999999999999998 899


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHc-CCChhHHHHHHHHccCchhhHHHHHHHHhCCChhhHHHHHHHHHHHHHhHHHHH
Q 015929          135 LSILFGCAAQYTIMPTSGVIVSKFL-GLPPALSVGLILLSCCPGGTASNVVTLIARGDVPLSIVMTMCTTLGAVLFTPLL  213 (398)
Q Consensus       135 ~~l~~~l~~~~vl~Pll~~~l~~l~-~l~~~~~~gl~l~~~~P~~~~s~v~t~~a~Gd~~la~~l~~lstlla~~~~Pl~  213 (398)
                      |.+.+.++.|+++-|+++|+++++| ++.|++.+|+++++.+||.+++.+|+++++||.++++..++++.++++++.|.+
T Consensus        81 k~L~lsL~~Nwii~P~lm~~la~~fl~~~pey~~GlILlglApC~aMVivw~~La~Gd~~~tlv~Va~n~l~qiv~y~~~  160 (342)
T COG0798          81 KPLILSLFVNWIIGPLLMFALAWFFLPDEPEYRAGLILLGLAPCIAMVIVWSGLAKGDRELTLVLVAFNSLLQIVLYAPL  160 (342)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHhhhhHHHHHHHHhhccCcHhhhhHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999987 777899999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhCcc-cccChHHHHHHHH-------------HHHHH-----H-HHHHhcccchhHHHHHHHHHHHHHHhhhhHHhh
Q 015929          214 TKILAGTY-VPVDAVKLSISTL-------------QSAFP-----A-AVKVVTPFTPLFAVLMSSLLACSVFSENLVRLK  273 (398)
Q Consensus       214 l~ll~g~~-v~vd~~~~~l~ll-------------r~~~p-----~-~~~~i~~~~~~is~~~llliv~~v~a~n~~~i~  273 (398)
                      .+++.+.. .+++++++..+++             |+...     + ..++..|..++++..++++.+..+|+.+.+.|.
T Consensus       161 ~~~~l~v~~~~v~~~~i~~Sv~lyl~iPli~G~lTR~i~~k~kg~~~~~~~f~p~ispi~ligLl~TivliF~~qg~~Iv  240 (342)
T COG0798         161 GKFFLGVISISVPFWTIAKSVLLYLGIPLIAGVLTRYILIKKKGREWYESRFLPKISPIALIGLLLTIVLIFAFQGEQIV  240 (342)
T ss_pred             HHHHHhhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHhhcChHHHHHHHHHHHHHHHHhHHHHH
Confidence            99998765 7788888776642             33222     2 336678888889999999999999999998886


Q ss_pred             hhhhhhhhcchhhhHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcchhHHHhhhhhcchhHHHHHHHHHh
Q 015929          274 SSVVGAALTSDLSLISRIKSILSGELGVIILSVLLLHFAGFFVGYLSAAICGFKEPQRRAISIEVGMQNSSLGVVLATAH  353 (398)
Q Consensus       274 ~~i~~~~~~~~~~~~~~~~~~l~~~~~~i~l~~~ll~~~~f~~G~~lar~~gl~~~~~~al~~~~g~rN~~Lai~lA~~~  353 (398)
                      ++.                    .+...+++..++.....|.++|+++|..|++++|+++++|+++.+|..+|+++|.+.
T Consensus       241 ~~p--------------------~~i~liAIpl~iy~~~~~~i~~~i~k~lgl~y~~~~~~~ft~aSNnfeLAiAvAi~l  300 (342)
T COG0798         241 EQP--------------------LDILLIAIPLLIYFLLMFFISYFIAKALGLPYEDAAALVFTGASNNFELAIAVAIAL  300 (342)
T ss_pred             hCh--------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhhceeeeeccccHHHHHHHHHHh
Confidence            531                    234566777788888999999999999999999999999999999999999999999


Q ss_pred             cC-CccchHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCC
Q 015929          354 FT-SSMVALPPAMSAVIMNIMGSTLGFFWRYIDPSDSKTSP  393 (398)
Q Consensus       354 f~-~p~~alp~~i~~l~q~i~~s~la~~~~~~~~~~~~~~~  393 (398)
                      |+ +...++..+++.++|.+.--.+++.+++.+++..++.+
T Consensus       301 fG~~s~aA~a~vigpLvEVpvml~lV~v~~~~~~~~~~~~~  341 (342)
T COG0798         301 FGLTSGAALATVVGPLVEVPVMLGLVKVALRIRKKYFKNER  341 (342)
T ss_pred             cCccccchhhhhccchhhHHHHHHHHHHHHHHhHhhcccCC
Confidence            98 56788888999999999988888888766655544433

>PF01758 SBF: Sodium Bile acid symporter family; InterPro: IPR002657 This family of proteins are found both in prokaryotes and eukaryotes

Probab=99.93  E-value=4.3e-25  Score=202.33  Aligned_cols=164  Identities=37%  Similarity=0.610  Sum_probs=137.9

Q ss_pred             HHHHHHHHHHcccCChHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHH-HHcCCChhHHHHHHHHccCchhhHHHHHHH
Q 015929          108 LSLGLIMLAMGLTLELKDLISLFMQRPLSILFGCAAQYTIMPTSGVIVS-KFLGLPPALSVGLILLSCCPGGTASNVVTL  186 (398)
Q Consensus       108 ~~l~~~mf~~Gl~l~~~~l~~~~~~~p~~l~~~l~~~~vl~Pll~~~l~-~l~~l~~~~~~gl~l~~~~P~~~~s~v~t~  186 (398)
                      +.++++||.+|++++.+|+++.. ||||.+..+++.|++++|+++|+++ ..++++++++.|+++++||||+.++++||+
T Consensus         2 i~l~~~mf~~gl~~~~~~l~~~~-~~p~~l~~~l~~~~~i~Plla~~l~~~~~~~~~~~~~Gl~l~~~~P~~~~s~~~t~   80 (187)
T PF01758_consen    2 ILLFLMMFSMGLSLTFEDLRRVL-RRPKLLLIGLLAQFLIMPLLAFGLAWLLLPLSPALALGLLLVAACPGGPASNVFTY   80 (187)
T ss_dssp             -HHHHHHHHHHHC--GGGGHHHH-HSHHHHHHHHHHHHHHHHHHHHHHH-HHTT--HHHHHHHHHHHHS-B-THHHHHHH
T ss_pred             hhhhHHHHHhhhcccHHHHHHHH-hChHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCcHHHHHHHHH
Confidence            47899999999999999999998 8999999999999999999999999 788999999999999999999999999999


Q ss_pred             HhCCChhhHHHHHHHHHHHHHhHHHHHHHHHhCcccccC---hHHHHHHH-------------HHHHHH--HHHHHhccc
Q 015929          187 IARGDVPLSIVMTMCTTLGAVLFTPLLTKILAGTYVPVD---AVKLSIST-------------LQSAFP--AAVKVVTPF  248 (398)
Q Consensus       187 ~a~Gd~~la~~l~~lstlla~~~~Pl~l~ll~g~~v~vd---~~~~~l~l-------------lr~~~p--~~~~~i~~~  248 (398)
                      ++|||.++++.++.++++++++++|+++.++.+...+.|   .+.+..++             +|++.|  +..+++++.
T Consensus        81 l~~Gd~~ls~~lt~istll~~~~~P~~~~l~~~~~~~~~~~~~~~~~~~~l~~v~lPl~lG~l~r~~~p~~~~~~~~~~~  160 (187)
T PF01758_consen   81 LAGGDVALSVSLTLISTLLAPFLMPLLLYLLSGGSVDVDSISPWDIIKSLLLIVILPLLLGMLLRKYLPREKFARRLKPF  160 (187)
T ss_dssp             HTT--HHHHHHHHHHHHHHHHHHHHHHHHHHH-GGGHHH---HHHHHHHHHHHTHHHHHHHHHHHHHHG-GGG-HHHHCC
T ss_pred             HhCCCcccccceeeHHHHHHHHHHHHHHHHHhccccCCchhhHHHHHHHHHheehHHHhHHHHHHHHhhHHHHHHHHHHH
Confidence            999999999999999999999999999999998877777   66655443             389999  788899999


Q ss_pred             chhHHHHHHHHHHHHHHhhhhHHh
Q 015929          249 TPLFAVLMSSLLACSVFSENLVRL  272 (398)
Q Consensus       249 ~~~is~~~llliv~~v~a~n~~~i  272 (398)
                      .+.++..++++++...++.|.+.+
T Consensus       161 ~~~~s~~~l~~~i~~~~~~~~~~i  184 (187)
T PF01758_consen  161 LKPLSFILLLLIIVLIFASNASVI  184 (187)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTH---
T ss_pred             hhHHHHHHHHHHHHHHHHHhcccc
Confidence            999999999888888888876644

They are related to the human bile acid:sodium symporters, which are transmembrane proteins functioning in the liver in the uptake of bile acids from portal blood plasma, a process mediated by the co-transport of Na+ []. In yeast, overexpression of the ACR3 gene confers an arsenite- but not an arsenate-resistance phenotype [].; GO: 0008508 bile acid:sodium symporter activity, 0006814 sodium ion transport, 0016020 membrane; PDB: 3ZUX_A 3ZUY_A.

>KOG2718 consensus Na+-bile acid cotransporter [Inorganic ion transport and metabolism]

Probab=99.91  E-value=9.1e-25  Score=216.40  Aligned_cols=267  Identities=37%  Similarity=0.518  Sum_probs=219.6

Q ss_pred             HHHHHHHHHHHHHhhcc-cccchhhhccchhHHHHHHHHHHHHcccCChHHHHHHHhcCchHHHHHHHHHHHHHHHHHHH
Q 015929           76 LYPLYVTVGGVIACLKP-SAFGWFVQRGPASYSLSLGLIMLAMGLTLELKDLISLFMQRPLSILFGCAAQYTIMPTSGVI  154 (398)
Q Consensus        76 ~~p~~i~~~~llgl~~P-~~~~~~~~~~~~~~~~~l~~~mf~~Gl~l~~~~l~~~~~~~p~~l~~~l~~~~vl~Pll~~~  154 (398)
                      ..|.......+.....| ..+.|+.+.   .....+...|+++|++++.+++++.+ +||..+.+|++.|++++|+.+|.
T Consensus        87 ~lp~~~~~~~v~~~~~~~~~~t~l~~~---~~~~gl~~~~ls~g~~~~~~~~~~~~-~rP~~~~lG~v~q~~i~pl~~f~  162 (371)
T KOG2718|consen   87 ILPLLVFLLKVLFLLDPLLAFTWLVTG---CFPPGLLSNMLSFGIKLDMDLFAGMI-KRPTPLALGFVPQYLIMPLLGFL  162 (371)
T ss_pred             chhHHHHHHHHHhhcCCcccceEEEeC---ccccHHHHHHHHHhcCccHHHHhhHh-hCCcceeehHHHHHHHHHHHHHh
Confidence            57888888888888888 778888754   45678999999999999999999998 89999999999999999999999


Q ss_pred             HHHHcCCChhHHHHHHHHccCchhhHHHHHHHHh-CCChhhHHHHHHHHHHHHHhHHHHHHHHHhCcccccChHHHHHH-
Q 015929          155 VSKFLGLPPALSVGLILLSCCPGGTASNVVTLIA-RGDVPLSIVMTMCTTLGAVLFTPLLTKILAGTYVPVDAVKLSIS-  232 (398)
Q Consensus       155 l~~l~~l~~~~~~gl~l~~~~P~~~~s~v~t~~a-~Gd~~la~~l~~lstlla~~~~Pl~l~ll~g~~v~vd~~~~~l~-  232 (398)
                      +.+.+.++...++|.+++.|++++..++..++.. +||+.+++.+|.++|+.+++++|++-.++.+..++.|...+..+ 
T Consensus       163 ~~~~~~lP~~~~ag~~Lvtc~~p~g~~~~~~~~~~~g~v~lsilmT~~stv~avi~~pl~s~~l~~~l~~~d~~~v~~s~  242 (371)
T KOG2718|consen  163 LSKVLLLPAALAAGLLLVTCVSPGGGGNYLTSKRLPGDVTLSILMTTISTVLAVILTPLLSILLGRALIPVDALGVIASI  242 (371)
T ss_pred             hhhHhhCCccccceeEEEEeccCCcchhhheeecCCcchhhHHHHHHHHHHHHHHHHHHHHHhhchhhhcccchhhhhhh
Confidence            9999999888878888888777777666555554 99999999999999999999999999999988888776544321 


Q ss_pred             ------------HHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhhhhHHhhhhhhhhhhcchhhhHHHHhhhhhhhHH
Q 015929          233 ------------TLQSAFPAAVKVVTPFTPLFAVLMSSLLACSVFSENLVRLKSSVVGAALTSDLSLISRIKSILSGELG  300 (398)
Q Consensus       233 ------------llr~~~p~~~~~i~~~~~~is~~~llliv~~v~a~n~~~i~~~i~~~~~~~~~~~~~~~~~~l~~~~~  300 (398)
                                  ++|+++|+..+.+.+.++.++.....+.+..-...|.....                       ...+
T Consensus       243 ~~vv~~pl~lG~lL~~~~~k~t~~i~~~~~~vsv~~t~l~~~~p~~~n~~~~~-----------------------~~~~  299 (371)
T KOG2718|consen  243 LQVVGLPLALGLLLNKWFPKRTVAIEPGLPPVSVCLTILCLAFPPGENGYLFL-----------------------FFGY  299 (371)
T ss_pred             hHHhHHHHHHHHHhcccCccceeeeecCCCchHHHhhhhhhcCChhhhhHHHH-----------------------HHHH
Confidence                        13888998888899999999888777766554544443221                       1235


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhCCCcchhHHHhhhhhcchhHHHHHHHHHhcCCccchHHHHHHHHH
Q 015929          301 VIILSVLLLHFAGFFVGYLSAAICGFKEPQRRAISIEVGMQNSSLGVVLATAHFTSSMVALPPAMSAVI  369 (398)
Q Consensus       301 ~i~l~~~ll~~~~f~~G~~lar~~gl~~~~~~al~~~~g~rN~~Lai~lA~~~f~~p~~alp~~i~~l~  369 (398)
                      .++..+..+++.+|..||+.++..+-+..++|++++|+|+||+.+++++++.+|+||.++.+++...+.
T Consensus       300 ~i~~~~~~l~l~g~l~~Y~~~~~~~~~~a~~~tisie~g~q~s~~a~~l~t~~~~dpl~~~~~~~s~v~  368 (371)
T KOG2718|consen  300 QILLLGAALPLAGFLAGYLLSFSPLDDVATARTISIETGMQNSLLALALATKHLQDPLVVVPPATSSVL  368 (371)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhccccchhhhhcchHHHhccchhHHHHHHhhcccCCceeeeccchhhhh
Confidence            688888999999999999997433333558999999999999999999999999999888887765543

>TIGR00946 2a69 he Auxin Efflux Carrier (AEC) Family

Probab=99.32  E-value=3.2e-11  Score=119.44  Aligned_cols=124  Identities=18%  Similarity=0.232  Sum_probs=107.3

Q ss_pred             HHhhcccccchhhhccchhHHHHHHHHHHHHcccCChHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHcCCChhHH
Q 015929           87 IACLKPSAFGWFVQRGPASYSLSLGLIMLAMGLTLELKDLISLFMQRPLSILFGCAAQYTIMPTSGVIVSKFLGLPPALS  166 (398)
Q Consensus        87 lgl~~P~~~~~~~~~~~~~~~~~l~~~mf~~Gl~l~~~~l~~~~~~~p~~l~~~l~~~~vl~Pll~~~l~~l~~l~~~~~  166 (398)
                      +|+..|+......+.   ......++.|+.+|+.++.++.+    ++.+......+++++++|++++++...++++++..
T Consensus       197 ~~i~lP~~l~~~l~~---lg~~~~plaLl~lG~~l~~~~~~----~~~~~~~~~~~~klil~P~i~~~~~~~~~l~~~~~  269 (321)
T TIGR00946       197 VGFKMPGLILKSISI---LSGATTPMALFSLGLALSPRKIK----LGVRDAILALIVRFLVQPAVMAGISKLIGLRGLEL  269 (321)
T ss_pred             HhhcCcHHHHHHHHH---HHHHHHHHHHHHHHHhhChhhhc----cChHHHHHHHHHHHHHHHHHHHHHHHHhCCChHHH
Confidence            455557655544432   45789999999999999877654    23466778888999999999999999999999999


Q ss_pred             HHHHHHccCchhhHHHHHHHHhCCChhhHHHHHHHHHHHHHhHHHHHHHHH
Q 015929          167 VGLILLSCCPGGTASNVVTLIARGDVPLSIVMTMCTTLGAVLFTPLLTKIL  217 (398)
Q Consensus       167 ~gl~l~~~~P~~~~s~v~t~~a~Gd~~la~~l~~lstlla~~~~Pl~l~ll  217 (398)
                      ...++++++|++..+.++++.+|+|.+++...+.++|+++++++|+|+.++
T Consensus       270 ~~~vl~aa~P~a~~~~i~A~~y~~~~~~aa~~v~~sT~ls~~tlp~~~~l~  320 (321)
T TIGR00946       270 SVAILQAALPGGAVAAVLATEYEVDVELASTAVTLSTVLSLISLPLFIILL  320 (321)
T ss_pred             HHHHHHHcCChhhHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            999999999999999999999999999999999999999999999999875

>PRK09903 putative transporter YfdV; Provisional

Probab=99.28  E-value=5.3e-11  Score=117.62  Aligned_cols=123  Identities=16%  Similarity=0.160  Sum_probs=104.8

Q ss_pred             HHhhcccccchhhhccchhHHHHHHHHHHHHcccCChHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHcCCChhHH
Q 015929           87 IACLKPSAFGWFVQRGPASYSLSLGLIMLAMGLTLELKDLISLFMQRPLSILFGCAAQYTIMPTSGVIVSKFLGLPPALS  166 (398)
Q Consensus        87 lgl~~P~~~~~~~~~~~~~~~~~l~~~mf~~Gl~l~~~~l~~~~~~~p~~l~~~l~~~~vl~Pll~~~l~~l~~l~~~~~  166 (398)
                      .|+..|+......+.   ......++.|+.+|+++...+++.    + +......+.++++.|++++++...+++++...
T Consensus       188 ~~i~lP~~i~~~l~~---lg~~~~PlaL~~iG~~L~~~~~~~----~-~~~~~~~~~Kli~~P~i~~~~~~~~~l~~~~~  259 (314)
T PRK09903        188 VGVKIPAAWDPTFNL---IAKANSGVAVFAAGLTLAAHKFEF----S-AEIAYNTFLKLILMPLALLLVGMACHLNSEHL  259 (314)
T ss_pred             cCCCCCHHHHHHHHH---HHHHHHHHHHHHHHHHHhhccccc----c-HHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHH
Confidence            444567655544432   568899999999999998776532    2 34557788899999999998888899999999


Q ss_pred             HHHHHHccCchhhHHHHHHHHhCCChhhHHHHHHHHHHHHHhHHHHHHHHH
Q 015929          167 VGLILLSCCPGGTASNVVTLIARGDVPLSIVMTMCTTLGAVLFTPLLTKIL  217 (398)
Q Consensus       167 ~gl~l~~~~P~~~~s~v~t~~a~Gd~~la~~l~~lstlla~~~~Pl~l~ll  217 (398)
                      ...++++++|++..+.++++.+|+|.+++...+.+||+++.+++|+|++++
T Consensus       260 ~v~vl~aa~P~a~~~~i~A~~y~~~~~~aa~~v~~sTlls~iTlpl~~~l~  310 (314)
T PRK09903        260 QMMVLAGALPPAFSGIIIASRFNVYTRTGTASLAVSVLGFVVTAPLWIYVS  310 (314)
T ss_pred             HHHHHHHcccHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999876

>COG0679 Predicted permeases [General function prediction only]

Probab=99.16  E-value=6.5e-10  Score=109.88  Aligned_cols=150  Identities=24%  Similarity=0.287  Sum_probs=118.2

Q ss_pred             HHHHHHHHHHhhHHHHH-HHHHHH---HHhhcccccchhhhccchhHHHHHHHHHHHHcccCChHHHHHHHhcCchHHHH
Q 015929           64 PRWEYLLSTAASLYPLY-VTVGGV---IACLKPSAFGWFVQRGPASYSLSLGLIMLAMGLTLELKDLISLFMQRPLSILF  139 (398)
Q Consensus        64 ~~~~~~l~~l~~~~p~~-i~~~~l---lgl~~P~~~~~~~~~~~~~~~~~l~~~mf~~Gl~l~~~~l~~~~~~~p~~l~~  139 (398)
                      ....+.++.+.++.+++ .++|.+   +++..|+......+.   ......++.|+.+|++++.+..++.   +++....
T Consensus       156 ~~~~~~~~~~~~nP~i~a~i~g~~~~~~~i~lP~~~~~~~~~---l~~a~~pl~li~lG~~L~~~~~~~~---~~~~~~~  229 (311)
T COG0679         156 KSLLSVLKKLLTNPLIIALILGLLLNLLGISLPAPLDTAVDL---LASAASPLALIALGLSLAFLKLKGS---KPPIILI  229 (311)
T ss_pred             hHHHHHHHHHHhCcHHHHHHHHHHHHHcCCCCcHHHHHHHHH---HHHhhhhHHHHHHhhhcchhhhccc---cchhHHH
Confidence            34445666665533333 333333   445667754444332   5678999999999999999555542   3455666


Q ss_pred             HHHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHccCchhhHHHHHHHHhCCChhhHHHHHHHHHHHHHhHHHHHHHHHhC
Q 015929          140 GCAAQYTIMPTSGVIVSKFLGLPPALSVGLILLSCCPGGTASNVVTLIARGDVPLSIVMTMCTTLGAVLFTPLLTKILAG  219 (398)
Q Consensus       140 ~l~~~~vl~Pll~~~l~~l~~l~~~~~~gl~l~~~~P~~~~s~v~t~~a~Gd~~la~~l~~lstlla~~~~Pl~l~ll~g  219 (398)
                      ....+++++|++++++.++++++++....+++++++|++.+++++++++|+|.+++...+.++|+++.+++|.+...+..
T Consensus       230 ~~~~kll~~Pl~~~~~~~~~~l~~~~~~v~vl~~a~P~A~~~~v~a~~~~~~~~laa~~i~ist~ls~~t~p~~~~~l~~  309 (311)
T COG0679         230 ALSLKLLLAPLVALLVAKLLGLSGLALQVLVLLSAMPTAVNAYVLARQYGGDPRLAASTILLSTLLSLLTLPLLILLLLR  309 (311)
T ss_pred             HHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHhhCcHHhHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            67779999999999999999999999999999999999999999999999999999999999999999999999888754

>PF03547 Mem_trans: Membrane transport protein; InterPro: IPR004776 This entry represents a mostly uncharacterised family of membrane transport proteins found in eukaryotes, bacteria and archaea

Probab=98.92  E-value=1.5e-08  Score=102.32  Aligned_cols=139  Identities=17%  Similarity=0.176  Sum_probs=107.0

Q ss_pred             hhHHHHHHHHHHHHHhhccccc----chhhhccchhHHHHHHHHHHHHcccCChHHHHHHHhcCchHHHHHHHHHHHHHH
Q 015929           74 ASLYPLYVTVGGVIACLKPSAF----GWFVQRGPASYSLSLGLIMLAMGLTLELKDLISLFMQRPLSILFGCAAQYTIMP  149 (398)
Q Consensus        74 ~~~~p~~i~~~~llgl~~P~~~----~~~~~~~~~~~~~~l~~~mf~~Gl~l~~~~l~~~~~~~p~~l~~~l~~~~vl~P  149 (398)
                      .+-..+..++|.++++.-|..-    .+..+...+.....+++.||.+|..+.....+...  +.+......+.+++++|
T Consensus       243 ~nP~~~a~~lgli~~~~~~~~~~~~~~~i~~~~~~lg~~~~pl~l~~lG~~l~~~~~~~~~--~~~~~~~~~~~rlii~P  320 (385)
T PF03547_consen  243 KNPPLIAIILGLIIGLIPPLRPLFFPSFITDSLSYLGAAAVPLALFVLGASLARGPRKSAL--GWKPSIIAVLVRLIILP  320 (385)
T ss_pred             hCcHHHHHHHHHHHHHHHHhcccchHhHHHHHHHHHHhhhHHHHHHHHHHHHhcCCcccch--hhHHHHHHHHHHHHHHH
Confidence            3333444566666665432221    22322222245778999999999998876554332  23444456889999999


Q ss_pred             HHHHHHHHHcCCChhHHHHHHHHccCchhhHHHHHHHHhCCChhhHHHHHHHHHHHHHhHHHHHH
Q 015929          150 TSGVIVSKFLGLPPALSVGLILLSCCPGGTASNVVTLIARGDVPLSIVMTMCTTLGAVLFTPLLT  214 (398)
Q Consensus       150 ll~~~l~~l~~l~~~~~~gl~l~~~~P~~~~s~v~t~~a~Gd~~la~~l~~lstlla~~~~Pl~l  214 (398)
                      ++++++.+.++++++....+++.+++|++..+.+++..++.|.+.+...+..+++++++++|+|+
T Consensus       321 ~i~~~~~~~~~l~~~~~~~~~~~~~~P~a~~~~~~a~~~~~~~~~~s~~~~~~~~~~~~~~~~~~  385 (385)
T PF03547_consen  321 LIGIGIVFLLGLDGDMARVLILQAAMPTAINSFVIASLYGLDEEEASSIVFWSTLLSIPTLPLWI  385 (385)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHhccCCchHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHC
Confidence            99999999999999999999999999999999999999999999999999999999999999984

Most characterised members of this family are the PIN components of auxin efflux systems from plants. These carriers are saturable, auxin-specific, and localized to the basal ends of auxin transport-competent cells [, ]. Plants typically posses several of these proteins, each displaying a unique tissue-specific expression pattern. They are expressed in almost all plant tissues including vascular tissues and roots, and influence many processes including the establishment of embryonic polarity, plant growth, apical hook formation in seedlings and the photo- and gravitrophic responses. These plant proteins are typically 600-700 amino acyl residues long and exhibit 8-12 transmembrane segments.; GO: 0055085 transmembrane transport, 0016021 integral to membrane

>KOG4821 consensus Predicted Na+-dependent cotransporter [General function prediction only]

Probab=98.79  E-value=5.4e-09  Score=95.69  Aligned_cols=142  Identities=20%  Similarity=0.209  Sum_probs=112.7

Q ss_pred             HHHHHHH-hhHHHHHHHHHHHHHhhcccccchhhhccch--hHHHHHHHHHHHHcccCChHHHHHHHhcCchHHHHHHHH
Q 015929           67 EYLLSTA-ASLYPLYVTVGGVIACLKPSAFGWFVQRGPA--SYSLSLGLIMLAMGLTLELKDLISLFMQRPLSILFGCAA  143 (398)
Q Consensus        67 ~~~l~~l-~~~~p~~i~~~~llgl~~P~~~~~~~~~~~~--~~~~~l~~~mf~~Gl~l~~~~l~~~~~~~p~~l~~~l~~  143 (398)
                      +|..++. .+|+-+.+.++...+.+-|+.+...+...+.  ...+..+-+++..|++++.|++.... ++++..+.+++.
T Consensus        14 ~R~~e~~~~~Wf~~~I~~~i~~aKL~p~~G~~gG~Lk~~ys~~yI~va~IF~~SGL~LkTE~l~aA~-~~w~LhLFilI~   92 (287)
T KOG4821|consen   14 HRVTEFLKSQWFFICIAILIVIAKLAPNFGRDGGLLKGQYSIGYICVAWIFLQSGLGLKTESLMAAM-LNWRLHLFILIL   92 (287)
T ss_pred             HHHHHHHhcchHHHHHHHhhhHhhhCCCCCccCCcccCceeEEeEEEEEEEeecCccccHHHHHHHH-hCCchHHHHHHH
Confidence            6788888 7789999999998899989876555444331  12456777899999999999999998 899988888998


Q ss_pred             HHHHHHHHHHHHHHHc---CCChhHHHHHHHHccCchhhHHH-HHHHHhCCChhhHHHHHHHHHHHHHhHHHH
Q 015929          144 QYTIMPTSGVIVSKFL---GLPPALSVGLILLSCCPGGTASN-VVTLIARGDVPLSIVMTMCTTLGAVLFTPL  212 (398)
Q Consensus       144 ~~vl~Pll~~~l~~l~---~l~~~~~~gl~l~~~~P~~~~s~-v~t~~a~Gd~~la~~l~~lstlla~~~~Pl  212 (398)
                      .+.+.|...|++..+.   +.|+++..|+.+.+|||++.+|+ +.|..+|||..   ..+..|++++.++.|.
T Consensus        93 ~Ll~tPs~~~Lf~~~~~~~~i~~wLl~GL~~~~CMPttvSS~ViLT~~aGGNa~---A~~v~S~f~g~L~~~~  162 (287)
T KOG4821|consen   93 SLLITPSIVYLFCCAVKAAKIDDWLLIGLILTACMPTTVSSNVILTTNAGGNAS---ALCVCSVFIGNLLGAF  162 (287)
T ss_pred             HHHHhHHHHHHHHHHHhCcchhHHHHhhheeeeecCCccccceeeeeccCccHH---HHHHHHHHHHHHhhhH
Confidence            9999999999887665   46788999999999999999999 79999999983   3344444444444443

>PRK12460 2-keto-3-deoxygluconate permease; Provisional

Probab=98.15  E-value=0.00026  Score=69.48  Aligned_cols=276  Identities=19%  Similarity=0.213  Sum_probs=140.4

Q ss_pred             HHHHHH-hhHHHHHHHHHHHHHhhcccccchhhhccch----hHHHHHHHHHHHHcccCChHHHHHHHhcCchHHHHHHH
Q 015929           68 YLLSTA-ASLYPLYVTVGGVIACLKPSAFGWFVQRGPA----SYSLSLGLIMLAMGLTLELKDLISLFMQRPLSILFGCA  142 (398)
Q Consensus        68 ~~l~~l-~~~~p~~i~~~~llgl~~P~~~~~~~~~~~~----~~~~~l~~~mf~~Gl~l~~~~l~~~~~~~p~~l~~~l~  142 (398)
                      |.++++ -....+=+++++++.-++|+.+. .+.....    -..+.+++.+|++|.+++.++..+.+ +|.-   .-+.
T Consensus         5 ~~~~kiPgg~m~vPl~lga~inTf~P~~l~-iG~fT~alf~~g~~~il~~~~~~~Ga~I~~k~~~~~l-~kg~---~l~~   79 (312)
T PRK12460          5 KAIKKIPGGMMVVPLLIGALINTFFPQALE-IGGFTTALFKTGAAPLLGAFLLCMGAQISLKAAPQAL-LKGG---VLTI   79 (312)
T ss_pred             hhhccCCCceeHHHHHHHHHHHhccCcchh-hCcccHHHHhcChHHHHHHHHHHhcCeeeccccchhh-hhhh---hhhh
Confidence            344555 33334446788888889998743 2222110    12568899999999999999998887 4322   3345


Q ss_pred             HHHHHHHHHHHHHHHHcCCChhHHHHHHHHccCchhhHHH--H---HHHHhCCChhhHHHHHHHHHHHHHhHHHHHHHHH
Q 015929          143 AQYTIMPTSGVIVSKFLGLPPALSVGLILLSCCPGGTASN--V---VTLIARGDVPLSIVMTMCTTLGAVLFTPLLTKIL  217 (398)
Q Consensus       143 ~~~vl~Pll~~~l~~l~~l~~~~~~gl~l~~~~P~~~~s~--v---~t~~a~Gd~~la~~l~~lstlla~~~~Pl~l~ll  217 (398)
                      .++++-=++++.+.++++.+.-.  |+-.++..-+-.++|  .   ++.++|-+.+-.. ....+.--    -|+...+.
T Consensus        80 ~K~~~~~~~g~~~~~~~g~~g~~--Gls~laiiaa~~~~Ng~ly~al~~~yG~~~d~gA-~~~~sl~~----GPf~tm~a  152 (312)
T PRK12460         80 TKLGVAIVIGLLVGKFFGAEGIF--GLSGLAIVAAMSNSNGGLYAALMGEFGDERDVGA-ISILSLND----GPFFTMLA  152 (312)
T ss_pred             HHHHHHHHHHHHHHHHcCccccc--chHHHHHHHHHhcCcHHHHHHHHHHcCCHhhhhH-Hhhhhhcc----CcHHHHHH
Confidence            68888888899999999866532  332222222222222  3   3555555444333 22222222    34333333


Q ss_pred             hCcc--cccCh---HHHHHHH-----HHHHHHHHHHHhcccchhHHHHHHHHHHHHHH----hhhhHHhhhhhhhhhhcc
Q 015929          218 AGTY--VPVDA---VKLSIST-----LQSAFPAAVKVVTPFTPLFAVLMSSLLACSVF----SENLVRLKSSVVGAALTS  283 (398)
Q Consensus       218 ~g~~--v~vd~---~~~~l~l-----lr~~~p~~~~~i~~~~~~is~~~llliv~~v~----a~n~~~i~~~i~~~~~~~  283 (398)
                      .+..  .++++   .++.+.+     ++...++..+..++-.+..       +.+..+    ..|.+++.+         
T Consensus       153 Lga~gLA~ip~~~lv~lilpILiGmilGNld~~~~~~l~~Gi~f~-------I~f~~f~LG~~lnl~~I~~---------  216 (312)
T PRK12460        153 LGAAGLANIPIMALVAALLPLVLGMILGNLDPDMRKFLTKGGPLL-------IPFFAFALGAGINLSMLLQ---------  216 (312)
T ss_pred             HHHHHHhcCChHHHHHHHHHHHHHHHHhccchhhHHHHhccceEe-------HHHHHHHhcCCeeHHHHHH---------
Confidence            2221  12332   2222222     2445554555555544431       111111    222222211         


Q ss_pred             hhhhHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcchhHHHhhhhhcchh-HHHHHHHHH--hcCC--cc
Q 015929          284 DLSLISRIKSILSGELGVIILSVLLLHFAGFFVGYLSAAICGFKEPQRRAISIEVGMQNS-SLGVVLATA--HFTS--SM  358 (398)
Q Consensus       284 ~~~~~~~~~~~l~~~~~~i~l~~~ll~~~~f~~G~~lar~~gl~~~~~~al~~~~g~rN~-~Lai~lA~~--~f~~--p~  358 (398)
                                   ..+ .-++..++...+.+.++|+++|++|.+++...+++-++|  |. .-+.+++..  .+..  +.
T Consensus       217 -------------~G~-~GIlL~v~vv~~t~~~~~~i~rllg~~~~~g~li~stAG--nAIcgpAAVaAadP~~~~~~~~  280 (312)
T PRK12460        217 -------------AGL-AGILLGVLVTIVTGFFNIFADRLVGGTGIAGAAASSTAG--NAVATPLAIAAADPSLAPVAAA  280 (312)
T ss_pred             -------------hCh-HHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHhh--HHHHHHHHHHHhchhHHHHHHH
Confidence                         111 122333344567788999999999887776555553344  43 222222221  1210  11


Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHhccCCC
Q 015929          359 VALPPAMSAVIMNIMGSTLGFFWRYIDPS  387 (398)
Q Consensus       359 ~alp~~i~~l~q~i~~s~la~~~~~~~~~  387 (398)
                      +..=++-..++-.+...++..+|.||.++
T Consensus       281 Ataqvaa~vivTail~P~~t~~~~k~~~~  309 (312)
T PRK12460        281 ATAQVAASVIVTAILTPLLTSWVAKKEAK  309 (312)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            11112334456667777778888777543

>PF03812 KdgT: 2-keto-3-deoxygluconate permease; InterPro: IPR004684 This family includes the characterised 2-Keto-3-Deoxygluconate transporters from Bacillus subtilis and Erwinia chrysanthemi

Probab=97.40  E-value=0.056  Score=53.19  Aligned_cols=154  Identities=14%  Similarity=0.225  Sum_probs=92.7

Q ss_pred             HHHHHH-hhHHHHHHHHHHHHHhhcccccchhhhccch---hHHHHHHHHHHHHcccCChHHHHHHHhcCchHHHHHHHH
Q 015929           68 YLLSTA-ASLYPLYVTVGGVIACLKPSAFGWFVQRGPA---SYSLSLGLIMLAMGLTLELKDLISLFMQRPLSILFGCAA  143 (398)
Q Consensus        68 ~~l~~l-~~~~p~~i~~~~llgl~~P~~~~~~~~~~~~---~~~~~l~~~mf~~Gl~l~~~~l~~~~~~~p~~l~~~l~~  143 (398)
                      |-++++ -..+.+=+++++++.-++|+.++..+.....   -....+++.+|++|.+++.++..+.+ ||-   ...++.
T Consensus         5 ~~i~kiPGG~mvVPLllgalinTf~P~~l~~iG~fT~al~~G~~~iig~~l~~~Ga~I~~k~~~~~l-kkg---~~ll~~   80 (314)
T PF03812_consen    5 KTIEKIPGGMMVVPLLLGALINTFFPNALEIIGGFTTALFTGANPIIGVFLFCMGAQIDLKSAGKVL-KKG---GVLLLV   80 (314)
T ss_pred             HhhccCCCceeHHHHHHHHHHHhcCCChhhccCcHHHHHHcchHHHHHHHHHHhccccchhhhhHHH-Hhh---hHHHHH
Confidence            344444 3445666778888899999987644332110   12578899999999999999999988 432   234567


Q ss_pred             HHHHHHHHHHHHHHHcCCChh---HHHH---HHHHccCchhhHHH--HHHHHhCCChhhHHHHHHHHHHHHHhHHHHHHH
Q 015929          144 QYTIMPTSGVIVSKFLGLPPA---LSVG---LILLSCCPGGTASN--VVTLIARGDVPLSIVMTMCTTLGAVLFTPLLTK  215 (398)
Q Consensus       144 ~~vl~Pll~~~l~~l~~l~~~---~~~g---l~l~~~~P~~~~s~--v~t~~a~Gd~~la~~l~~lstlla~~~~Pl~l~  215 (398)
                      ++++-=++++++.++|+.+.-   ...|   +.+++++-....+.  .++..+|-+.+-++ ..    +++...-|+...
T Consensus        81 K~~~~~~lgl~~~~~fg~~Gi~~g~f~GlS~LAiiaa~~~~NggLY~aL~~~yGd~~D~gA-~~----i~sl~~GPf~tM  155 (314)
T PF03812_consen   81 KFIIGALLGLLVGKFFGPEGIQSGFFLGLSALAIIAAMTNSNGGLYLALMGQYGDEEDVGA-FS----ILSLNDGPFFTM  155 (314)
T ss_pred             HHHHHHHHHHHHHHHcCccccccccccchHHHHHHHHHhcCCHHHHHHHHHHhCCHHHhHH-HH----HHHhhhhHHHHH
Confidence            888888889999999976542   2222   23333332222222  34555554444433 22    344455566665


Q ss_pred             HHhCc--ccccChHHHH
Q 015929          216 ILAGT--YVPVDAVKLS  230 (398)
Q Consensus       216 ll~g~--~v~vd~~~~~  230 (398)
                      +..|.  ..++|+..+.
T Consensus       156 l~LG~sG~a~ip~~~lv  172 (314)
T PF03812_consen  156 LALGASGLANIPWMSLV  172 (314)
T ss_pred             HHHhhccccCCCHHHHH
Confidence            55543  3467765543

There are homologs of this protein found in both Gram-positive and Gram-negative bacteria. In E. chrysanthemi, a phytopathogenic bacterium, degraded pectin products from plant cell walls are transported by 2-keto-3-deoxygluconate permease into the bacterial cell to provide a carbon and energy source []. 2-keto-3-deoxygluconate permease can mediate the uptake of glucuronate with a low affinity [].; GO: 0015649 2-keto-3-deoxygluconate:hydrogen symporter activity, 0008643 carbohydrate transport, 0046411 2-keto-3-deoxygluconate transport, 0016021 integral to membrane

>PF05145 AmoA: Putative ammonia monooxygenase; InterPro: IPR007820 This family contains sequences annotated as ammonia monooxygenase

Probab=97.38  E-value=0.18  Score=50.15  Aligned_cols=110  Identities=15%  Similarity=0.216  Sum_probs=86.2

Q ss_pred             HHHHHHHHHHHHcccCChHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHccCchhhHHH-HH
Q 015929          106 YSLSLGLIMLAMGLTLELKDLISLFMQRPLSILFGCAAQYTIMPTSGVIVSKFLGLPPALSVGLILLSCCPGGTASN-VV  184 (398)
Q Consensus       106 ~~~~l~~~mf~~Gl~l~~~~l~~~~~~~p~~l~~~l~~~~vl~Pll~~~l~~l~~l~~~~~~gl~l~~~~P~~~~s~-v~  184 (398)
                      ......++=..+|..++.+.+.+.. +.+..+....+...+..-..+|.+.+.-+.|..    --+.+++|+|.+.. ++
T Consensus        27 r~~~q~ilG~~iG~~~t~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~r~~~~d~~----TA~~~~~PGg~s~m~~l  101 (318)
T PF05145_consen   27 RNAGQAILGVSIGSSFTPEVLAQLA-SWWPPMLLLLVVTLLLSLVGAWLLRRISGLDRA----TAFFASMPGGLSEMVAL  101 (318)
T ss_pred             HHHHHHHHHHHHHcccCHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChh----HHHHHcCCccHHHHHHH
Confidence            3556666667789999999999875 555555555555566666667777777777654    34689999999777 79


Q ss_pred             HHHhCCChhhHHHHHHHHHHHHHhHHHHHHHHHhCc
Q 015929          185 TLIARGDVPLSIVMTMCTTLGAVLFTPLLTKILAGT  220 (398)
Q Consensus       185 t~~a~Gd~~la~~l~~lstlla~~~~Pl~l~ll~g~  220 (398)
                      ++..|+|.+..+....+=-++-++++|+...++.+.
T Consensus       102 a~~~gad~~~Va~~q~lRl~~Vv~~vP~i~~~~~~~  137 (318)
T PF05145_consen  102 AEEYGADTRRVALVQSLRLLLVVLLVPFIASLLGGG  137 (318)
T ss_pred             HHHcCCChhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence            999999999999999999999999999999888763

The AmoA gene product from Pseudomonas putida has been characterised as ammonia monooxygenase []. Ammonia monooxygenase catalyses the oxidation of NH(3) to NH(2)OH.

>KOG2718 consensus Na+-bile acid cotransporter [Inorganic ion transport and metabolism]

Probab=97.29  E-value=0.00025  Score=71.31  Aligned_cols=238  Identities=20%  Similarity=0.259  Sum_probs=146.7

Q ss_pred             HHHHHHHHcccCChHHHHHHHhcCchHHHHHHHHHHH-HHHHHHHHHHHHcCCChhHHHHHHHHccCchhhHHHHHHHHh
Q 015929          110 LGLIMLAMGLTLELKDLISLFMQRPLSILFGCAAQYT-IMPTSGVIVSKFLGLPPALSVGLILLSCCPGGTASNVVTLIA  188 (398)
Q Consensus       110 l~~~mf~~Gl~l~~~~l~~~~~~~p~~l~~~l~~~~v-l~Pll~~~l~~l~~l~~~~~~gl~l~~~~P~~~~s~v~t~~a  188 (398)
                      +...|+..|++++.++++++. ++++.+...+..++- ++|+..+.....+-.++......+...++|++..++.++.-.
T Consensus        50 L~~~~~~~~c~~~i~~~~~h~-~~~~g~~v~~~~~~~~~lp~~~~~~~v~~~~~~~~~~t~l~~~~~~~gl~~~~ls~g~  128 (371)
T KOG2718|consen   50 LNFVMFSLGCNLTISLLWRHS-LRSWGILVALKEAFGLILPLLVFLLKVLFLLDPLLAFTWLVTGCFPPGLLSNMLSFGI  128 (371)
T ss_pred             HhHhhcccccceeccchhhhh-cCcceeeeehhhccccchhHHHHHHHHHhhcCCcccceEEEeCccccHHHHHHHHHhc
Confidence            336799999999999999887 677677777778888 999999999888888888889999999999999999999999


Q ss_pred             CCChhhHHHHHHHHHHHHHhHHH-HHHHHHhC----cc--cccChH-HH-HHH---------HHHHHHHHHHHHhcccch
Q 015929          189 RGDVPLSIVMTMCTTLGAVLFTP-LLTKILAG----TY--VPVDAV-KL-SIS---------TLQSAFPAAVKVVTPFTP  250 (398)
Q Consensus       189 ~Gd~~la~~l~~lstlla~~~~P-l~l~ll~g----~~--v~vd~~-~~-~l~---------llr~~~p~~~~~i~~~~~  250 (398)
                      ++|.+....++.-.+.+.+..+| ++++=+.|    ..  .+-+.. .. +..         .+....++-...+...+.
T Consensus       129 ~~~~~~~~~~~~rP~~~~lG~v~q~~i~pl~~f~~~~~~~lP~~~~ag~~Lvtc~~p~g~~~~~~~~~~~g~v~lsilmT  208 (371)
T KOG2718|consen  129 KLDMDLFAGMIKRPTPLALGFVPQYLIMPLLGFLLSKVLLLPAALAAGLLLVTCVSPGGGGNYLTSKRLPGDVTLSILMT  208 (371)
T ss_pred             CccHHHHhhHhhCCcceeehHHHHHHHHHHHHHhhhhHhhCCccccceeEEEEeccCCcchhhheeecCCcchhhHHHHH
Confidence            99999999998777766666666 22222221    11  111110 10 000         012333222233344444


Q ss_pred             hHHHHHHHHHHHHHHhhhhHHhhhhhhhhhhcchhhhHHHHhhhhhhhHHHHHHHHHHHHHHH--HHHHHHHHHhhCCCc
Q 015929          251 LFAVLMSSLLACSVFSENLVRLKSSVVGAALTSDLSLISRIKSILSGELGVIILSVLLLHFAG--FFVGYLSAAICGFKE  328 (398)
Q Consensus       251 ~is~~~llliv~~v~a~n~~~i~~~i~~~~~~~~~~~~~~~~~~l~~~~~~i~l~~~ll~~~~--f~~G~~lar~~gl~~  328 (398)
                      .++.++.+.+. -.-+....+.                     .+..+...  +....+..++  +.+|+++.+     .
T Consensus       209 ~~stv~avi~~-pl~s~~l~~~---------------------l~~~d~~~--v~~s~~~vv~~pl~lG~lL~~-----~  259 (371)
T KOG2718|consen  209 TISTVLAVILT-PLLSILLGRA---------------------LIPVDALG--VIASILQVVGLPLALGLLLNK-----W  259 (371)
T ss_pred             HHHHHHHHHHH-HHHHHhhchh---------------------hhcccchh--hhhhhhHHhHHHHHHHHHhcc-----c
Confidence            44443322211 1111111110                     00001111  1113344555  788888874     3


Q ss_pred             chhHHHhhhhhcchhHHHHHHHHHhcC---CccchHHHHHHHHHHHHHHHHHH
Q 015929          329 PQRRAISIEVGMQNSSLGVVLATAHFT---SSMVALPPAMSAVIMNIMGSTLG  378 (398)
Q Consensus       329 ~~~~al~~~~g~rN~~Lai~lA~~~f~---~p~~alp~~i~~l~q~i~~s~la  378 (398)
                      -.+++..++.++||.++...+-...|+   +...-.. .-|+++|......++
T Consensus       260 ~~k~t~~i~~~~~~vsv~~t~l~~~~p~~~n~~~~~~-~~~~i~~~~~~l~l~  311 (371)
T KOG2718|consen  260 FPKRTVAIEPGLPPVSVCLTILCLAFPPGENGYLFLF-FGYQILLLGAALPLA  311 (371)
T ss_pred             CccceeeeecCCCchHHHhhhhhhcCChhhhhHHHHH-HHHHHHHHHHHHHHH
Confidence            356788999999999999888887776   1222222 556666655544443

>TIGR00793 kdgT 2-keto-3-deoxygluconate transporter

Probab=97.16  E-value=0.013  Score=57.23  Aligned_cols=154  Identities=13%  Similarity=0.146  Sum_probs=89.5

Q ss_pred             HHHHHH-hhHHHHHHHHHHHHHhhcccccchhhhccch---hHHHHHHHHHHHHcccCChHHHHHHHhcCchHHHHHHHH
Q 015929           68 YLLSTA-ASLYPLYVTVGGVIACLKPSAFGWFVQRGPA---SYSLSLGLIMLAMGLTLELKDLISLFMQRPLSILFGCAA  143 (398)
Q Consensus        68 ~~l~~l-~~~~p~~i~~~~llgl~~P~~~~~~~~~~~~---~~~~~l~~~mf~~Gl~l~~~~l~~~~~~~p~~l~~~l~~  143 (398)
                      +.++++ -....+=+++++++.-++|+.+...+.....   -..+.+++.+|++|.+++.++-.+.+ +|.-   ..+..
T Consensus         5 ~~i~kIPGG~MiVPLllga~inTf~P~~~~~~GgFTtalf~G~~~il~~~l~~~Ga~I~~k~~g~~l-~kg~---~l~~~   80 (314)
T TIGR00793         5 RSIEKIPGGMMLVPLFLGALCHTFAPGAGKYFGSFTNGLITGTVPILAVWFFCMGASIDLSATGTVL-RKSG---TLVVT   80 (314)
T ss_pred             hhhccCCCceeHHHHHHHHHHHhcCCchhhhcCchhHHHHcCcHHHHHHHHHHhCCeeeecccchhh-hhcc---eeeeH
Confidence            334454 2333444677888888999976553332110   12568999999999999999988887 4432   23456


Q ss_pred             HHHHHHHHHHHHHHHcCCCh---hHHHHHHHHccCchhhHHH--H---HHHHhCCChhhHHHHHHHHHHHHHhHHHHHHH
Q 015929          144 QYTIMPTSGVIVSKFLGLPP---ALSVGLILLSCCPGGTASN--V---VTLIARGDVPLSIVMTMCTTLGAVLFTPLLTK  215 (398)
Q Consensus       144 ~~vl~Pll~~~l~~l~~l~~---~~~~gl~l~~~~P~~~~s~--v---~t~~a~Gd~~la~~l~~lstlla~~~~Pl~l~  215 (398)
                      ++++-=++++.+.++++.+.   .+..|+-.++..-+-.++|  .   ++.++|-+.+-... .    ++++-.-|+...
T Consensus        81 K~~i~~~~g~~~~~~~g~~Gi~~g~~~GlS~LAiiaA~~nsNggLY~aL~~qyGd~~D~gA~-~----i~sl~~GPf~TM  155 (314)
T TIGR00793        81 KIAVAWVVAAIASRIIPEDGVEVGFFAGLSTLALVAAMDMTNGGLYASIMQQYGTKEEAGAF-V----LMSLESGPLMTM  155 (314)
T ss_pred             HHHHHHHHHHHHHHHcCcCCccccceeccHHHHHHHHHhCCcHHHHHHHHHHcCCHhhhhhh-h----hhhhccCcHHHH
Confidence            88888888999999998655   2222333332222222222  3   35566555443332 2    233344466666


Q ss_pred             HHhCcc--cccChHHHH
Q 015929          216 ILAGTY--VPVDAVKLS  230 (398)
Q Consensus       216 ll~g~~--v~vd~~~~~  230 (398)
                      +.+|..  .+++++.+.
T Consensus       156 i~LG~sGlA~ip~~~lv  172 (314)
T TIGR00793       156 VILGTAGIASFEPHVFV  172 (314)
T ss_pred             HHHhhccCCCCCHHHHH
Confidence            665543  456665543

This family includes the characterized 2-Keto-3-Deoxygluconate transporters from Bacillus subtilis and Erwinia chrysanthemi. There are homologs of this protein found in both gram-positive and gram-negative bacteria.

>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional

Probab=97.01  E-value=0.73  Score=50.08  Aligned_cols=110  Identities=22%  Similarity=0.182  Sum_probs=60.2

Q ss_pred             HHHHHHHHHHHHhhcccccchhhhc--cchhHHHHHHHHHHHHcccCChHHHHHHHhcCchHHHHHHHHHHHHHHHHHHH
Q 015929           77 YPLYVTVGGVIACLKPSAFGWFVQR--GPASYSLSLGLIMLAMGLTLELKDLISLFMQRPLSILFGCAAQYTIMPTSGVI  154 (398)
Q Consensus        77 ~p~~i~~~~llgl~~P~~~~~~~~~--~~~~~~~~l~~~mf~~Gl~l~~~~l~~~~~~~p~~l~~~l~~~~vl~Pll~~~  154 (398)
                      ....++.|+++|   |..+.+..+.  ........+.++||..|+.++++++++.  ++ + +...-..|.++.-+++++
T Consensus        32 vlgyilaGillG---P~~lg~i~~~~~i~~laelGvv~LlF~iGLEl~~~~l~~~--~~-~-~~~~g~~qv~~~~~~~~~  104 (621)
T PRK03562         32 VLGYLIAGCIIG---PWGLRLVTDVESILHFAEFGVVLMLFVIGLELDPQRLWKL--RR-S-IFGGGALQMVACGGLLGL  104 (621)
T ss_pred             HHHHHHHHHHhC---cccccCCCCHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHH--HH-H-HHHHHHHHHHHHHHHHHH
Confidence            444455566555   5433332210  0113467889999999999999999875  22 2 333333455555455666


Q ss_pred             HHHHcCCCh--hHHHHHHHHccCchhhHHHHHHHHhCCChhh
Q 015929          155 VSKFLGLPP--ALSVGLILLSCCPGGTASNVVTLIARGDVPL  194 (398)
Q Consensus       155 l~~l~~l~~--~~~~gl~l~~~~P~~~~s~v~t~~a~Gd~~l  194 (398)
                      +++.++.+.  .+..|..+..++ ++....++...-.-+.+.
T Consensus       105 ~~~~~g~~~~~al~ig~~la~SS-taiv~~~L~e~~~l~t~~  145 (621)
T PRK03562        105 FCMLLGLRWQVALLIGLGLALSS-TAIAMQAMNERNLMVTQM  145 (621)
T ss_pred             HHHHhCCCHHHHHHHHHHHHHHH-HHHHHHHHHHhccccCch
Confidence            667776654  344444444333 334444566554334443

>COG0475 KefB Kef-type K+ transport systems, membrane components [Inorganic ion transport and metabolism]

Probab=96.89  E-value=0.65  Score=47.65  Aligned_cols=114  Identities=18%  Similarity=0.278  Sum_probs=60.3

Q ss_pred             HHHHHHHHHHHHcccCChHHHHHHHhcCchHHHHHHHHHHHHHH-HHHHHHHH-HcCCCh--hHHHHHHHHccCchhhHH
Q 015929          106 YSLSLGLIMLAMGLTLELKDLISLFMQRPLSILFGCAAQYTIMP-TSGVIVSK-FLGLPP--ALSVGLILLSCCPGGTAS  181 (398)
Q Consensus       106 ~~~~l~~~mf~~Gl~l~~~~l~~~~~~~p~~l~~~l~~~~vl~P-ll~~~l~~-l~~l~~--~~~~gl~l~~~~P~~~~s  181 (398)
                      ....+.++||..|+..+.+++++..  |...  .+...--+..| .++..... .++.+.  ....|..+. ...++..+
T Consensus        62 aelGvi~LlF~~GLE~~~~~l~~~~--~~~~--~~~~~~~~~~~~~l~~~~~~~~~g~~~~~al~lg~~l~-~sS~~i~~  136 (397)
T COG0475          62 AELGVVFLLFLIGLEFDLERLKKVG--RSVG--LGVAQVGLTAPFLLGLLLLLGILGLSLIAALFLGAALA-LSSTAIVL  136 (397)
T ss_pred             HHHhHHHHHHHHHHCcCHHHHHHhc--hhhh--hhHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHH-HHHHHHHH
Confidence            4678999999999999999999873  2212  22222233444 33422222 355543  344444433 33344555


Q ss_pred             HHHHHHhCCChhhH---HHHHHHHHHHHHhHHHHHHHHHhCccccc
Q 015929          182 NVVTLIARGDVPLS---IVMTMCTTLGAVLFTPLLTKILAGTYVPV  224 (398)
Q Consensus       182 ~v~t~~a~Gd~~la---~~l~~lstlla~~~~Pl~l~ll~g~~v~v  224 (398)
                      -++.+.-+=+.+..   .....+.-+.++....+...+..+...+.
T Consensus       137 ~iL~e~~~~~~~~g~~~l~~~i~~Di~~i~lLai~~~l~~~g~~~~  182 (397)
T COG0475         137 KILMELGLLKTREGQLILGALVFDDIAAILLLAIVPALAGGGSGSV  182 (397)
T ss_pred             HHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCccH
Confidence            56766555444444   33444555555555555444443333333

>PLN03159 cation/H(+) antiporter 15; Provisional

Probab=96.76  E-value=1.4  Score=49.56  Aligned_cols=68  Identities=4%  Similarity=0.076  Sum_probs=39.1

Q ss_pred             HHHHHHHHHhhCCCcchhHHHhhhhhcchhHHHHHHHHHhcC-----CccchHHHHHHHHHHHHHHHHHHHHHh
Q 015929          314 FFVGYLSAAICGFKEPQRRAISIEVGMQNSSLGVVLATAHFT-----SSMVALPPAMSAVIMNIMGSTLGFFWR  382 (398)
Q Consensus       314 f~~G~~lar~~gl~~~~~~al~~~~g~rN~~Lai~lA~~~f~-----~p~~alp~~i~~l~q~i~~s~la~~~~  382 (398)
                      +..+++.++.+|.+.+|+.++++-...|- ...+.++.....     +.....-+++..+...+.+.++..+++
T Consensus       365 ~~g~~l~a~~~g~~~~eal~lG~lm~~kG-~~~Lii~~ig~~~gvi~~~~f~~lVl~avl~T~i~~Plv~~ly~  437 (832)
T PLN03159        365 IMGTIIIAFFYTMPFREGITLGFLMNTKG-LVEMIVLNVGRDQEVLDDESFAVMVLVAVAMTALITPVVTVVYR  437 (832)
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHhccc-HHHHHHHHHHHhcCccCchhhhHHHHHHHHHHHHHHHHHHHHhC
Confidence            45567777889999999999988877774 444444443222     122222122222345555666655543

>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional

Probab=96.72  E-value=1.2  Score=48.20  Aligned_cols=84  Identities=19%  Similarity=0.105  Sum_probs=47.4

Q ss_pred             HHHHHHHHHHHHcccCChHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHcCCCh--hHHHHHHHHccCchhhHHHH
Q 015929          106 YSLSLGLIMLAMGLTLELKDLISLFMQRPLSILFGCAAQYTIMPTSGVIVSKFLGLPP--ALSVGLILLSCCPGGTASNV  183 (398)
Q Consensus       106 ~~~~l~~~mf~~Gl~l~~~~l~~~~~~~p~~l~~~l~~~~vl~Pll~~~l~~l~~l~~--~~~~gl~l~~~~P~~~~s~v  183 (398)
                      ....+.++||.+|+.++++++++..  + + ....-..|.++.-++++++...++.+.  .+..|+.+ +.+.++....+
T Consensus        60 aelGvv~LLF~iGLel~~~~l~~~~--~-~-~~~~g~~~v~~t~~~~~~~~~~~g~~~~~a~~~g~~l-a~SSTaiv~~i  134 (601)
T PRK03659         60 SELGVVFLMFIIGLELNPSKLWQLR--R-S-IFGVGAAQVLLSAAVLAGLLMLTDFSWQAAVVGGIGL-AMSSTAMALQL  134 (601)
T ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHH--H-H-HHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHH-HHHHHHHHHHH
Confidence            4678999999999999999998752  2 2 222333444443334444555566653  23334322 23334444556


Q ss_pred             HHHHhCCChhh
Q 015929          184 VTLIARGDVPL  194 (398)
Q Consensus       184 ~t~~a~Gd~~l  194 (398)
                      +...-.-+.+.
T Consensus       135 L~e~~~~~t~~  145 (601)
T PRK03659        135 MREKGMNRSES  145 (601)
T ss_pred             HHHcccccCch
Confidence            66654444433

>TIGR03082 Gneg_AbrB_dup membrane protein AbrB duplication

Probab=96.57  E-value=0.16  Score=45.18  Aligned_cols=107  Identities=20%  Similarity=0.278  Sum_probs=78.5

Q ss_pred             hHHHHHHHHHHHHcccCChHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHccCchhhHHH-H
Q 015929          105 SYSLSLGLIMLAMGLTLELKDLISLFMQRPLSILFGCAAQYTIMPTSGVIVSKFLGLPPALSVGLILLSCCPGGTASN-V  183 (398)
Q Consensus       105 ~~~~~l~~~mf~~Gl~l~~~~l~~~~~~~p~~l~~~l~~~~vl~Pll~~~l~~l~~l~~~~~~gl~l~~~~P~~~~s~-v  183 (398)
                      .......++-..+|++++.+++++.. +.....+...+....+.=..++.+.+..+.|...    .+.+++|+|.... .
T Consensus        48 ~~~~~qviiG~~iG~~f~~~~l~~~~-~~~~~~l~~~~~~l~~~~~~~~~l~~~~~~~~~t----a~La~~PGGl~~m~~  122 (156)
T TIGR03082        48 LLALAQVVIGILIGSRFTREVLAELK-RLWPAALLSTVLLLALSALLAWLLARLTGVDPLT----AFLATSPGGASEMAA  122 (156)
T ss_pred             HHHHHHHHHHHHHHccCCHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHH----HHHHhCCchHHHHHH
Confidence            44667777778899999999999874 4444333333333444444466677777776643    3688999999877 6


Q ss_pred             HHHHhCCChhhHHHHHHHHHHHHHhHHHHHHHH
Q 015929          184 VTLIARGDVPLSIVMTMCTTLGAVLFTPLLTKI  216 (398)
Q Consensus       184 ~t~~a~Gd~~la~~l~~lstlla~~~~Pl~l~l  216 (398)
                      ++...|.|....+....+=.++-.++.|++..+
T Consensus       123 ~A~~~gad~~~V~~~q~~Rl~~v~~~~P~i~~~  155 (156)
T TIGR03082       123 LAAELGADVAFVAAMQTLRLLFVVLLVPLLARL  155 (156)
T ss_pred             HHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            888889999999999998888888889987654

The model describes a hydrophobic sequence region that is duplicated to form the AbrB protein of Escherichia coli (not to be confused with a Bacillus subtilis protein with the same gene symbol). In some species, notably the Cyanobacteria and Thermus thermophilus, proteins consist of a single copy rather than two copies. The member from Pseudomonas putida, PP_1415, was suggested to be an ammonia monooxygenase characteristic of heterotrophic nitrifiers, based on an experimental indication of such activity in the organism and a glimmer of local sequence similarity between parts of P. putida protein and an instance of the AmoA protein from Nitrosomonas europaea (PubMed:9732537); we do not believe the sequence similarity to be meaningful. The member from E. coli (b0715, ybgN) appears to be the largely uncharacterized AbrB (aidB regulator) protein of E. coli cited in Volkert, et al. (PubMed 8002588), although we did not manage to tra

>PRK05274 2-keto-3-deoxygluconate permease; Provisional

Probab=96.32  E-value=0.38  Score=48.10  Aligned_cols=80  Identities=20%  Similarity=0.321  Sum_probs=52.8

Q ss_pred             HHHHHHHHHHHHhhcccccchhhhccch----hHHHHHHHHHHHHcccCChHHHHHHHhcCchHHHHHHHHHHHHHHHHH
Q 015929           77 YPLYVTVGGVIACLKPSAFGWFVQRGPA----SYSLSLGLIMLAMGLTLELKDLISLFMQRPLSILFGCAAQYTIMPTSG  152 (398)
Q Consensus        77 ~p~~i~~~~llgl~~P~~~~~~~~~~~~----~~~~~l~~~mf~~Gl~l~~~~l~~~~~~~p~~l~~~l~~~~vl~Pll~  152 (398)
                      ..+-+++++++.-++|+... +++....    -....+++.+|++|.+++.++....+ +|.-   ..++.++.+-=+++
T Consensus        17 m~vpl~~g~~i~tf~P~~~~-~g~fT~alf~~g~~~l~~~~~~~~ga~i~~~~~~~~l-~~g~---~l~~~k~~~~~~~~   91 (326)
T PRK05274         17 MLVPLLLGALINTFAPGALY-FGSFTNALFKTGAVPILAVFLFCMGASINLRATGTVL-KKGG---TLLLTKFAVAALVG   91 (326)
T ss_pred             eeHHHHHHHHHHHhCCccee-eCcchHHHHhcChHHHHHHHHHHcCCEEeccccchhh-hhch---hHHHHHHHHHHHHH
Confidence            34446678888889998532 2221110    13568889999999999999998887 4432   23345666666667


Q ss_pred             HHHHHHcCC
Q 015929          153 VIVSKFLGL  161 (398)
Q Consensus       153 ~~l~~l~~l  161 (398)
                      +...++++.
T Consensus        92 ~~~~~~~g~  100 (326)
T PRK05274         92 VIAGKFIGE  100 (326)
T ss_pred             HHhhhcchH
Confidence            777777764

>PRK10669 putative cation:proton antiport protein; Provisional

Probab=95.70  E-value=3.7  Score=43.90  Aligned_cols=81  Identities=25%  Similarity=0.344  Sum_probs=47.5

Q ss_pred             HHHHHHHHHHHHhhcccccchhhhccchhHHHHHHHHHHHHcccCChHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHH
Q 015929           77 YPLYVTVGGVIACLKPSAFGWFVQRGPASYSLSLGLIMLAMGLTLELKDLISLFMQRPLSILFGCAAQYTIMPTSGVIVS  156 (398)
Q Consensus        77 ~p~~i~~~~llgl~~P~~~~~~~~~~~~~~~~~l~~~mf~~Gl~l~~~~l~~~~~~~p~~l~~~l~~~~vl~Pll~~~l~  156 (398)
                      ....++.|+++|-...+...... .........+.++||..|++++.+++++.  +  +....+...+.++.-++++++.
T Consensus        33 ivg~IlaGillGp~~lg~~~~~~-~~~~la~lGli~llF~~Gle~d~~~l~~~--~--~~~~~~~~~~~~~~~~~~~~~~  107 (558)
T PRK10669         33 LVGYLLAGVLAGPFTPGFVADTK-LAPELAELGVILLMFGVGLHFSLKDLMAV--K--SIAIPGAIAQIAVATLLGMALS  107 (558)
T ss_pred             HHHHHHHHHhhCccccccccchH-HHHHHHHHHHHHHHHHhHhcCCHHHHHHH--h--hHHHHHHHHHHHHHHHHHHHHH
Confidence            44555666666532222211111 01124477899999999999999999864  2  2333445556665555667677


Q ss_pred             HHcCCC
Q 015929          157 KFLGLP  162 (398)
Q Consensus       157 ~l~~l~  162 (398)
                      +.++.+
T Consensus       108 ~~~~~~  113 (558)
T PRK10669        108 AVLGWS  113 (558)
T ss_pred             HHhCCC
Confidence            777654

>PRK04288 antiholin-like protein LrgB; Provisional

Probab=95.53  E-value=0.42  Score=45.34  Aligned_cols=89  Identities=11%  Similarity=0.037  Sum_probs=73.4

Q ss_pred             HHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHccCchhhHHHHHHHHhCCChhhHHHHHHHHHHHH
Q 015929          127 ISLFMQRPLSILFGCAAQYTIMPTSGVIVSKFLGLPPALSVGLILLSCCPGGTASNVVTLIARGDVPLSIVMTMCTTLGA  206 (398)
Q Consensus       127 ~~~~~~~p~~l~~~l~~~~vl~Pll~~~l~~l~~l~~~~~~gl~l~~~~P~~~~s~v~t~~a~Gd~~la~~l~~lstlla  206 (398)
                      ++.+||+++.+..+.++--++--..++.+++++++|++....+.==+.  ++..+.-.++..||+.++++..+.++-+++
T Consensus        86 ~~~lk~~~~~Il~~~~vG~~~~i~s~~~la~~lgl~~~~~~Sl~pKSV--TtPIAm~is~~iGG~psLtA~~ViitGi~G  163 (232)
T PRK04288         86 RDVLKKYWWQILGGIVVGSVCSVLIIYLVAKLIQLDNAVMASMLPQAA--TTAIALPVSAGIGGIKEITSFAVIFNAVII  163 (232)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHhhHhh--hHHHHHHHHHHhCCcHHHHHHHHHHHHHHH
Confidence            333445667888888877777777888999999999988776655444  666677899999999999999999999999


Q ss_pred             HhHHHHHHHHH
Q 015929          207 VLFTPLLTKIL  217 (398)
Q Consensus       207 ~~~~Pl~l~ll  217 (398)
                      .+.-|.++.++
T Consensus       164 ai~g~~llk~~  174 (232)
T PRK04288        164 YALGAKFLKLF  174 (232)
T ss_pred             HHHHHHHHHHc
Confidence            99999999887

>PRK10711 hypothetical protein; Provisional

Probab=95.46  E-value=0.13  Score=48.69  Aligned_cols=89  Identities=17%  Similarity=0.192  Sum_probs=74.1

Q ss_pred             HHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHccCchhhHHHHHHHHhCCChhhHHHHHHHHHHHH
Q 015929          127 ISLFMQRPLSILFGCAAQYTIMPTSGVIVSKFLGLPPALSVGLILLSCCPGGTASNVVTLIARGDVPLSIVMTMCTTLGA  206 (398)
Q Consensus       127 ~~~~~~~p~~l~~~l~~~~vl~Pll~~~l~~l~~l~~~~~~gl~l~~~~P~~~~s~v~t~~a~Gd~~la~~l~~lstlla  206 (398)
                      ++.+|++++.+..+...--++--..++.+++++++|++....+.==+.  ++..+.-.++..||+.++++..+.++-+++
T Consensus        81 ~~~lk~~~~~I~~~~~vG~~v~i~s~~~l~~~lg~~~~~~~Sl~pkSV--TtPIAm~is~~iGG~~sLta~~ViitGi~G  158 (231)
T PRK10711         81 LHQIRARWKSIISICFIGSVVAMVTGTAVALWMGATPEIAASILPKSV--TTPIAMAVGGSIGGIPAISAVCVIFVGILG  158 (231)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHhhhhh--hHHHHHHHHHHhCCcHHHHHHHHHHHHHHH
Confidence            333445677888888877777778889999999999998877765554  666677799999999999999999999999


Q ss_pred             HhHHHHHHHHH
Q 015929          207 VLFTPLLTKIL  217 (398)
Q Consensus       207 ~~~~Pl~l~ll  217 (398)
                      .+.-|.++.++
T Consensus       159 a~~g~~llk~~  169 (231)
T PRK10711        159 AVFGHTLLNAM  169 (231)
T ss_pred             HHHHHHHHHHc
Confidence            99999999887

>TIGR00659 conserved hypothetical protein TIGR00659

Probab=95.40  E-value=0.13  Score=48.61  Aligned_cols=92  Identities=20%  Similarity=0.261  Sum_probs=73.0

Q ss_pred             HHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHccCchhhHHHHHHHHhCCChhhHHHHHHHHH
Q 015929          124 KDLISLFMQRPLSILFGCAAQYTIMPTSGVIVSKFLGLPPALSVGLILLSCCPGGTASNVVTLIARGDVPLSIVMTMCTT  203 (398)
Q Consensus       124 ~~l~~~~~~~p~~l~~~l~~~~vl~Pll~~~l~~l~~l~~~~~~gl~l~~~~P~~~~s~v~t~~a~Gd~~la~~l~~lst  203 (398)
                      .+=++.+||+++.+..+...--++--..++.+++++++|++....+.-=+.  ++..+.-.++..|||.++++..+.++-
T Consensus        77 Y~~~~~lk~~~~~Il~~~~~G~~~~~~s~~~la~~lg~~~~i~~Sl~pkSv--TtpiAm~vs~~iGG~~sLta~~vvitG  154 (226)
T TIGR00659        77 YKQLPQIKKYWKEIILNVAVGSVIAIISGTLLALLLGLGPEIIASLLPKSV--TTPIAMHVSEMIGGIPAVTAVFVILTG  154 (226)
T ss_pred             HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHhhhHHh--hHHHHHHHHHHhCChHHHHHHHHHHHH
Confidence            333444445667777777776666667788899999999988776654444  666667799999999999999999999


Q ss_pred             HHHHhHHHHHHHHH
Q 015929          204 LGAVLFTPLLTKIL  217 (398)
Q Consensus       204 lla~~~~Pl~l~ll  217 (398)
                      +++..+-|.++.++
T Consensus       155 i~Ga~~g~~ll~~~  168 (226)
T TIGR00659       155 LLGTVFGPMVLRYF  168 (226)
T ss_pred             HHHHHHHHHHHHHc
Confidence            99999999998887

Members of this small but broadly distibuted (Gram-positive, Gram-negative, and Archaeal) family appear to have multiple transmembrane segments. The function is unknown. A homolog, LrgB of Staphylococcus aureus, in the same small superfamily but in an outgroup to this subfamily, is regulated by LytSR and is suggested to act as a murein hydrolase. Of the three paralogous proteins in B. subtilis, one is a full length member of this family, one lacks the C-terminal 60 residues and has an additional 128 N-terminal residues but branches within the family in a phylogenetic tree, and one is closely related to LrgB and part of the outgroup.

>PF03547 Mem_trans: Membrane transport protein; InterPro: IPR004776 This entry represents a mostly uncharacterised family of membrane transport proteins found in eukaryotes, bacteria and archaea

Probab=95.33  E-value=0.055  Score=54.58  Aligned_cols=73  Identities=21%  Similarity=0.331  Sum_probs=54.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhCCCcchhHHHhhhhhcchh-HHHHHHHHHhcCCccchHHHHHHHHHHHHH
Q 015929          300 GVIILSVLLLHFAGFFVGYLSAAICGFKEPQRRAISIEVGMQNS-SLGVVLATAHFTSSMVALPPAMSAVIMNIM  373 (398)
Q Consensus       300 ~~i~l~~~ll~~~~f~~G~~lar~~gl~~~~~~al~~~~g~rN~-~Lai~lA~~~f~~p~~alp~~i~~l~q~i~  373 (398)
                      +.+.+...+...+++.+++...|.++.+++++.....+++..|+ .+++++....|++.... ...++.+.+.+.
T Consensus        63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~lglpi~~~l~g~~~~~-~~~~~~~~~~i~  136 (385)
T PF03547_consen   63 WFIPVFAFIIFILGLLLGFLLSRLFRLPKEWRGVFVLAASFGNTGFLGLPILQALFGERGVA-YAIIFDVVNNII  136 (385)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCCcccceEEEecccCCcchhhHHHHHHHHhcchhhh-hehHHHHhhHHH
Confidence            44555556667888999999999999999999999999999999 88999999999752222 234444444443

Most characterised members of this family are the PIN components of auxin efflux systems from plants. These carriers are saturable, auxin-specific, and localized to the basal ends of auxin transport-competent cells [, ]. Plants typically posses several of these proteins, each displaying a unique tissue-specific expression pattern. They are expressed in almost all plant tissues including vascular tissues and roots, and influence many processes including the establishment of embryonic polarity, plant growth, apical hook formation in seedlings and the photo- and gravitrophic responses. These plant proteins are typically 600-700 amino acyl residues long and exhibit 8-12 transmembrane segments.; GO: 0055085 transmembrane transport, 0016021 integral to membrane

>PF04172 LrgB: LrgB-like family ; InterPro: IPR007300 The two products of the lrgAB operon are potential membrane proteins, and LrgA and LrgB are both thought to control murein hydrolase activity and penicillin tolerance []

Probab=95.26  E-value=0.16  Score=47.71  Aligned_cols=89  Identities=22%  Similarity=0.286  Sum_probs=73.4

Q ss_pred             HHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHccCchhhHHHHHHHHhCCChhhHHHHHHHHHHHH
Q 015929          127 ISLFMQRPLSILFGCAAQYTIMPTSGVIVSKFLGLPPALSVGLILLSCCPGGTASNVVTLIARGDVPLSIVMTMCTTLGA  206 (398)
Q Consensus       127 ~~~~~~~p~~l~~~l~~~~vl~Pll~~~l~~l~~l~~~~~~gl~l~~~~P~~~~s~v~t~~a~Gd~~la~~l~~lstlla  206 (398)
                      ++.++++++.+..+....-++--...+.+++.+++|++....+.-=+.  ++..+.-.++..|||.++++..+.++-+++
T Consensus        70 ~~~l~~~~~~il~~~~~g~~~~~~~~~~l~~~lgl~~~~~~Sl~pkSV--TtpiAi~is~~iGG~~sLta~~VvitGi~G  147 (215)
T PF04172_consen   70 RRLLKKNWIPILVGVLVGSLVSIFSAVLLARLLGLSPEIILSLAPKSV--TTPIAIEISEQIGGIPSLTAVFVVITGILG  147 (215)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHh--hHHHHHHHHHHhCChHHHHHHHHHHHhhHH
Confidence            333346677788888877777777788899999999998877765555  666677799999999999999999999999


Q ss_pred             HhHHHHHHHHH
Q 015929          207 VLFTPLLTKIL  217 (398)
Q Consensus       207 ~~~~Pl~l~ll  217 (398)
                      .+.-|.++.++
T Consensus       148 a~~g~~llk~~  158 (215)
T PF04172_consen  148 AVLGPPLLKLL  158 (215)
T ss_pred             HHhHHHHHhHc
Confidence            99999999886

>PRK12460 2-keto-3-deoxygluconate permease; Provisional

Probab=94.61  E-value=0.35  Score=47.81  Aligned_cols=109  Identities=14%  Similarity=0.150  Sum_probs=71.1

Q ss_pred             HHHHHHHHHHHcccCChHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHcCCChhHHHHHHH-HccCchhhHHH-HH
Q 015929          107 SLSLGLIMLAMGLTLELKDLISLFMQRPLSILFGCAAQYTIMPTSGVIVSKFLGLPPALSVGLIL-LSCCPGGTASN-VV  184 (398)
Q Consensus       107 ~~~l~~~mf~~Gl~l~~~~l~~~~~~~p~~l~~~l~~~~vl~Pll~~~l~~l~~l~~~~~~gl~l-~~~~P~~~~s~-v~  184 (398)
                      ...+.+..|.+|.+++++++.+.   -...++++++. .++.=.+.|.+.++++.|+.....+-- .+..=|+.++. ..
T Consensus       195 ~f~I~f~~f~LG~~lnl~~I~~~---G~~GIlL~v~v-v~~t~~~~~~i~rllg~~~~~g~li~stAGnAIcgpAAVaAa  270 (312)
T PRK12460        195 PLLIPFFAFALGAGINLSMLLQA---GLAGILLGVLV-TIVTGFFNIFADRLVGGTGIAGAAASSTAGNAVATPLAIAAA  270 (312)
T ss_pred             eEeHHHHHHHhcCCeeHHHHHHh---ChHHHHHHHHH-HHHHHHHHHHHHHHhCCChhHHHHHHHHhhHHHHHHHHHHHh
Confidence            44888888999999999999875   24556655554 334445677788988887765322220 12222222222 23


Q ss_pred             HHHhCCChhhHHHHHHHHHHHHHhHHHHHHHHHhC
Q 015929          185 TLIARGDVPLSIVMTMCTTLGAVLFTPLLTKILAG  219 (398)
Q Consensus       185 t~~a~Gd~~la~~l~~lstlla~~~~Pl~l~ll~g  219 (398)
                      .-..+..++.+...+..+.+...++.|++..++..
T Consensus       271 dP~~~~~~~~Ataqvaa~vivTail~P~~t~~~~k  305 (312)
T PRK12460        271 DPSLAPVAAAATAQVAASVIVTAILTPLLTSWVAK  305 (312)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34445577788888888888888889988887753

>COG3180 AbrB Putative ammonia monooxygenase [General function prediction only]

Probab=94.55  E-value=5.9  Score=39.95  Aligned_cols=108  Identities=20%  Similarity=0.255  Sum_probs=85.1

Q ss_pred             HHHHHHHHHHHcccCChHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHccCchhhHHH-HHH
Q 015929          107 SLSLGLIMLAMGLTLELKDLISLFMQRPLSILFGCAAQYTIMPTSGVIVSKFLGLPPALSVGLILLSCCPGGTASN-VVT  185 (398)
Q Consensus       107 ~~~l~~~mf~~Gl~l~~~~l~~~~~~~p~~l~~~l~~~~vl~Pll~~~l~~l~~l~~~~~~gl~l~~~~P~~~~s~-v~t  185 (398)
                      .....+.=..+|.+++.+++.... +++-......+......-+.+|.+.+.-+.|...    -+.+++|+|.+.. .++
T Consensus        61 ~~~q~ilG~~ig~~~t~s~l~~l~-~~w~~~~~v~~~tl~~s~l~g~ll~r~~~~~~~T----a~~gs~PGgas~m~~iA  135 (352)
T COG3180          61 KAGQVILGIMIGASLTPSVLDTLK-SNWPIVLVVLLLTLLSSILLGWLLKRFSILPGNT----AFLGSSPGGASAMVSIA  135 (352)
T ss_pred             HHHHHHHHHHHhhhcCHHHHHHHH-HcccHHHHHHHHHHHHHHHHHHHHHHhcCCCcch----hhHhcCCchHHHHHHHH
Confidence            334444455679999999998875 6666666666666666777788887765566544    2578999999888 799


Q ss_pred             HHhCCChhhHHHHHHHHHHHHHhHHHHHHHHHhC
Q 015929          186 LIARGDVPLSIVMTMCTTLGAVLFTPLLTKILAG  219 (398)
Q Consensus       186 ~~a~Gd~~la~~l~~lstlla~~~~Pl~l~ll~g  219 (398)
                      +-+|.|.++.+.+..+=-+.-..+.|+....+.+
T Consensus       136 ~d~gAd~~~VAl~Q~lRvl~Vvl~vplv~~~~~~  169 (352)
T COG3180         136 QDYGADLRLVALMQYLRVLFVVLLAPLVSRLFVG  169 (352)
T ss_pred             HHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            9999999999999999999999999999999985

>PF05145 AmoA: Putative ammonia monooxygenase; InterPro: IPR007820 This family contains sequences annotated as ammonia monooxygenase

Probab=94.37  E-value=1.3  Score=44.07  Aligned_cols=110  Identities=19%  Similarity=0.232  Sum_probs=81.4

Q ss_pred             hHHHHHHHHHHHHcccCChHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHccCchhhHHH-H
Q 015929          105 SYSLSLGLIMLAMGLTLELKDLISLFMQRPLSILFGCAAQYTIMPTSGVIVSKFLGLPPALSVGLILLSCCPGGTASN-V  183 (398)
Q Consensus       105 ~~~~~l~~~mf~~Gl~l~~~~l~~~~~~~p~~l~~~l~~~~vl~Pll~~~l~~l~~l~~~~~~gl~l~~~~P~~~~s~-v  183 (398)
                      ....+..++=..+|++.+.+++++.. |.....+...+.-....=+.++.+.++.+.|.    .-.+++.+|+|.... .
T Consensus       205 l~~~aqv~iG~~iG~~f~~~~l~~~~-~~~~~~l~~~~~~l~~~~~~a~~l~~~~~~~~----~t~~La~aPGGl~eM~l  279 (318)
T PF05145_consen  205 LVNAAQVLIGASIGSRFTRETLRELR-RLLPPALLSTLLLLALCALFAWLLSRLTGIDF----LTALLATAPGGLAEMAL  279 (318)
T ss_pred             HHHHHHHHHHHHHHccccHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH----HHHHHHhCCccHHHHHH
Confidence            34556666667789999999999864 32222223333334444555677777777665    456789999999888 7


Q ss_pred             HHHHhCCChhhHHHHHHHHHHHHHhHHHHHHHHHhC
Q 015929          184 VTLIARGDVPLSIVMTMCTTLGAVLFTPLLTKILAG  219 (398)
Q Consensus       184 ~t~~a~Gd~~la~~l~~lstlla~~~~Pl~l~ll~g  219 (398)
                      .+...|.|++.......+=.+.-.++.|++..++..
T Consensus       280 ~A~~l~~d~~~V~~~q~~Rl~~v~~~~p~~~r~~~r  315 (318)
T PF05145_consen  280 IALALGADVAFVAAHQVVRLLFVLLLAPFIARWLRR  315 (318)
T ss_pred             HHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            888899999999999999999999999999888753

The AmoA gene product from Pseudomonas putida has been characterised as ammonia monooxygenase []. Ammonia monooxygenase catalyses the oxidation of NH(3) to NH(2)OH.

>COG1346 LrgB Putative effector of murein hydrolase [Cell envelope biogenesis, outer membrane]

Probab=94.09  E-value=2.4  Score=40.11  Aligned_cols=96  Identities=26%  Similarity=0.314  Sum_probs=74.0

Q ss_pred             CChHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHccCchhhHHHHHHHHhCCChhhHHHHHH
Q 015929          121 LELKDLISLFMQRPLSILFGCAAQYTIMPTSGVIVSKFLGLPPALSVGLILLSCCPGGTASNVVTLIARGDVPLSIVMTM  200 (398)
Q Consensus       121 l~~~~l~~~~~~~p~~l~~~l~~~~vl~Pll~~~l~~l~~l~~~~~~gl~l~~~~P~~~~s~v~t~~a~Gd~~la~~l~~  200 (398)
                      +...+=++.++|+++.+..+.++--++-=..++.++++|++|++....++==+.  ++..+.-.++.-||-.++++..+.
T Consensus        77 vPLYkq~~~ik~~w~~I~~g~~vGs~~ai~s~~llak~~g~~~~~~~Sl~PkSv--TTpiAm~vs~~iGGip~ltav~Vi  154 (230)
T COG1346          77 VPLYKQRHLIKRHWKPILAGVLVGSVVAIISGVLLAKLFGLSPELILSLLPKSV--TTPIAMEVSESIGGIPALTAVFVI  154 (230)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHhccccc--ccHHHHHHHHhcCCchHHHHHHHH
Confidence            333343444457788888888876666667788999999999987665543332  555666789999999999999999


Q ss_pred             HHHHHHHhHHHHHHHHHh
Q 015929          201 CTTLGAVLFTPLLTKILA  218 (398)
Q Consensus       201 lstlla~~~~Pl~l~ll~  218 (398)
                      ++-++..++-|.++..+-
T Consensus       155 ~tGi~Gavlg~~llk~~~  172 (230)
T COG1346         155 LTGILGAVLGPLLLKLLR  172 (230)
T ss_pred             HHHHHHHHHHHHHHHHhc
Confidence            999999999999998883

>PRK05326 potassium/proton antiporter; Reviewed

Probab=93.45  E-value=13  Score=39.89  Aligned_cols=55  Identities=13%  Similarity=0.114  Sum_probs=34.2

Q ss_pred             HHHHHHHHHHHHHhhcccccchhh-hccchhHHHHHHHHHHHHcccCChHHHHHHH
Q 015929           76 LYPLYVTVGGVIACLKPSAFGWFV-QRGPASYSLSLGLIMLAMGLTLELKDLISLF  130 (398)
Q Consensus        76 ~~p~~i~~~~llgl~~P~~~~~~~-~~~~~~~~~~l~~~mf~~Gl~l~~~~l~~~~  130 (398)
                      .....+++|+++|-..++...... +........+++++||..|++++.+++++..
T Consensus        32 ~ll~~il~GillGp~~lg~i~~~~~~~~~~i~~l~L~~iLF~~Gl~~~~~~l~~~~   87 (562)
T PRK05326         32 SLLLFLAIGMLAGEDGLGGIQFDNYPLAYLVGNLALAVILFDGGLRTRWSSFRPAL   87 (562)
T ss_pred             HHHHHHHHHHHhCccccCCcccCcHHHHHHHHHHHHHHHHHcCccCCCHHHHHHHH
Confidence            355566677777643222111000 0011145789999999999999999999875

>PF03601 Cons_hypoth698: Conserved hypothetical protein 698; InterPro: IPR018383 This entry represents a family of uncharacterised multi-pass membrane proteins

Probab=92.86  E-value=1.1  Score=44.47  Aligned_cols=138  Identities=18%  Similarity=0.158  Sum_probs=84.9

Q ss_pred             hHHHHHHHHHHHHHh-hcccccchhhhccchhHHHHHHHHHHHHcccCChHHHHHHHhcCchHHHHHHHHHHHHHHHHHH
Q 015929           75 SLYPLYVTVGGVIAC-LKPSAFGWFVQRGPASYSLSLGLIMLAMGLTLELKDLISLFMQRPLSILFGCAAQYTIMPTSGV  153 (398)
Q Consensus        75 ~~~p~~i~~~~llgl-~~P~~~~~~~~~~~~~~~~~l~~~mf~~Gl~l~~~~l~~~~~~~p~~l~~~l~~~~vl~Pll~~  153 (398)
                      ....+.+++|++++= .+ ..-++..+-..+.....+-.-...+|.++++.|+.+.-   ++.+....+ .....=.+++
T Consensus        27 ~~~~~AillG~~i~n~~~-~~~~~~~~Gi~~~~k~~Lr~gIVLlG~~l~~~~i~~~G---~~~~~~~~~-~v~~~~~~~~  101 (305)
T PF03601_consen   27 GALLIAILLGMLIGNLFF-GLPARFKPGIKFSSKKLLRLGIVLLGFRLSFSDILALG---WKGLLIIII-VVILTFLLTY  101 (305)
T ss_pred             cHHHHHHHHHHHHhhhcc-CCcHHHHhHHHHHHHHHHHHHHHHHCccccHHHHHHhC---ccHHHHHHH-HHHHHHHHHH
Confidence            346777788887773 22 11122221111122356777778889999999998863   344433333 3344445567


Q ss_pred             HHH-HHcCCChhHHHHHHHHccCchhhHHHH----HHHHhCCChhhHHHHHHHHHHHHHhHHHHHHHHHh
Q 015929          154 IVS-KFLGLPPALSVGLILLSCCPGGTASNV----VTLIARGDVPLSIVMTMCTTLGAVLFTPLLTKILA  218 (398)
Q Consensus       154 ~l~-~l~~l~~~~~~gl~l~~~~P~~~~s~v----~t~~a~Gd~~la~~l~~lstlla~~~~Pl~l~ll~  218 (398)
                      .++ +.+++|++.. -++-++.+=||.++..    ..+--+-|.++++..+.+-+.++++.+|.+-..+.
T Consensus       102 ~lg~r~~~l~~~~~-~Lia~GtsICG~SAi~A~a~~i~a~~~~~a~ava~V~lfg~vam~~~P~l~~~l~  170 (305)
T PF03601_consen  102 WLGRRLFGLDRKLA-ILIAAGTSICGASAIAATAPVIKAKEEDVAYAVATVFLFGTVAMFLYPLLGHALG  170 (305)
T ss_pred             HHHHHHhCCCHHHH-HHHHhhcccchHHHHHHHcccccCCCCceeeeehHHHHHHHHHHHHHHHHHHHhC
Confidence            777 9999987642 2333334444444332    22334557899999999999999999999888763

; GO: 0016021 integral to membrane

>COG3180 AbrB Putative ammonia monooxygenase [General function prediction only]

Probab=91.80  E-value=8.5  Score=38.80  Aligned_cols=110  Identities=18%  Similarity=0.208  Sum_probs=78.6

Q ss_pred             hhHHHHHHHHHHHHcccCChHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHccCchhhHHH-
Q 015929          104 ASYSLSLGLIMLAMGLTLELKDLISLFMQRPLSILFGCAAQYTIMPTSGVIVSKFLGLPPALSVGLILLSCCPGGTASN-  182 (398)
Q Consensus       104 ~~~~~~l~~~mf~~Gl~l~~~~l~~~~~~~p~~l~~~l~~~~vl~Pll~~~l~~l~~l~~~~~~gl~l~~~~P~~~~s~-  182 (398)
                      |.....-.++....|++++...+++.. |--....+..+..+.+.=.+++.+.+..+.|..    ..+.+.+|+|.... 
T Consensus       237 wl~~va~~~iG~~IG~~f~~~~l~~~~-r~~~~~~v~ii~l~~~~~~~a~ll~~~~~i~~~----ta~La~sPGGl~~ma  311 (352)
T COG3180         237 WLLAVAQALIGALIGSRFDRSILREAK-RLLPAILVSIIALMAIAAGMAGLLSWLTGIDLN----TAYLATSPGGLDTMA  311 (352)
T ss_pred             HHHHHHHHHHHHHHcccccHHHHHHhH-hhcchHHHHHHHHHHHHHHHHHHHHHhcCCCHH----HHHHHcCCCcHHHHH
Confidence            334456666677789999999999863 322333344444455555567777777777654    35689999999888 


Q ss_pred             HHHHHhCCChhhHHHHHHHHHHHHHhHHHHHHHHHh
Q 015929          183 VVTLIARGDVPLSIVMTMCTTLGAVLFTPLLTKILA  218 (398)
Q Consensus       183 v~t~~a~Gd~~la~~l~~lstlla~~~~Pl~l~ll~  218 (398)
                      ..+...+-|.++...+..+=-++-.++.|.+.+.+.
T Consensus       312 ~~A~~l~ad~a~V~a~q~lRll~il~i~p~l~r~l~  347 (352)
T COG3180         312 AIAAALGADPAFVMALQVLRLLFILLLGPALARFLS  347 (352)
T ss_pred             HHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            555556669999999999988888888888887764

>COG2855 Predicted membrane protein [Function unknown]

Probab=91.57  E-value=1.2  Score=44.45  Aligned_cols=136  Identities=21%  Similarity=0.220  Sum_probs=86.6

Q ss_pred             HHHHHHHHHHHHhhcccccchhhhccchhHHHHHHHHHHHHcccCChHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHH
Q 015929           77 YPLYVTVGGVIACLKPSAFGWFVQRGPASYSLSLGLIMLAMGLTLELKDLISLFMQRPLSILFGCAAQYTIMPTSGVIVS  156 (398)
Q Consensus        77 ~p~~i~~~~llgl~~P~~~~~~~~~~~~~~~~~l~~~mf~~Gl~l~~~~l~~~~~~~p~~l~~~l~~~~vl~Pll~~~l~  156 (398)
                      +.+.+++|++++.+ ++.......-..+.....+-+-....|.+++++|+.+.-   ...+ ..........=++++.++
T Consensus        40 l~lAIllGi~l~~l-~~~~~~~~~GI~fs~k~LLr~gIvLlG~~ltl~~i~~~G---~~~v-~~~~~~l~~t~~~~~~lg  114 (334)
T COG2855          40 LTLAILLGILLGIL-PQIPAQTSAGITFSSKKLLRLGIVLLGFRLTLSDIADVG---GSGV-LIIAITLSSTFLFAYFLG  114 (334)
T ss_pred             HHHHHHHHHHHhcc-ccchhhhccchhhhHHHHHHHHHHHHcceeeHHHHHHcC---ccHH-HHHHHHHHHHHHHHHHHH
Confidence            66778888888843 332222211112233556777777789999999999862   2332 223333444446688899


Q ss_pred             HHcCCChhHHHHHHHHccCchhhHHHHHH----HHhCCChhhHHHHHHHHHHHHHhHHHHHHHHHh
Q 015929          157 KFLGLPPALSVGLILLSCCPGGTASNVVT----LIARGDVPLSIVMTMCTTLGAVLFTPLLTKILA  218 (398)
Q Consensus       157 ~l~~l~~~~~~gl~l~~~~P~~~~s~v~t----~~a~Gd~~la~~l~~lstlla~~~~Pl~l~ll~  218 (398)
                      +.+++|...+. ++=+++.=||.++..-+    .--+-|++.++..+.+-..++++.+|.+..++.
T Consensus       115 ~~lgld~~~a~-Lia~GssICGasAiaA~~pvika~~~eva~aIa~V~lfgtia~llyP~l~~~l~  179 (334)
T COG2855         115 KLLGLDKKLAL-LIAAGSSICGASAIAATAPVIKAEEEEVAVAIAVVVLFGTLAMLLYPLLYPLLG  179 (334)
T ss_pred             HHhCCCHHHHH-HHHccchhhHHHHHHHhCCcCCCCccccceehhhHHHHHHHHHHHHHHHHHHhC
Confidence            99999886532 33445555666554322    233446888888998888899999999887764

>KOG2722 consensus Predicted membrane protein [Function unknown]

Probab=90.04  E-value=0.28  Score=49.29  Aligned_cols=148  Identities=15%  Similarity=0.103  Sum_probs=99.1

Q ss_pred             HHHHHHhhHHHHHHHHHHHHHhhcccc---------cchhhhccchhHHHHHHHHHHHHcccCChHHHHHHHhcCchHHH
Q 015929           68 YLLSTAASLYPLYVTVGGVIACLKPSA---------FGWFVQRGPASYSLSLGLIMLAMGLTLELKDLISLFMQRPLSIL  138 (398)
Q Consensus        68 ~~l~~l~~~~p~~i~~~~llgl~~P~~---------~~~~~~~~~~~~~~~l~~~mf~~Gl~l~~~~l~~~~~~~p~~l~  138 (398)
                      ..++.+..-..+..+++.++|..-|-.         .....+-.-......++.++...|-++-.+-=+..  .+.+.++
T Consensus       240 ~~L~~i~~Pptia~iiA~vigai~pLr~lifg~~apl~~itdsv~llG~~~IP~illvLGgnL~~g~~ss~--~~~~~ii  317 (408)
T KOG2722|consen  240 VILKEIFAPPTIAAIIALVIGAIPPLRRLIFGEDAPLRVITDSVTLLGDGAIPCILLVLGGNLIQGLRSSA--LKTSVII  317 (408)
T ss_pred             hhHHHhcCchHHHHHHHHHHhcchHHHHHhhccCchHHHHHHHHHHhccccchhhhhhhccccccCchhcc--cCceEEE
Confidence            445555444566666777777654421         11111100012356889999999988855443333  3445444


Q ss_pred             HHHHHHHHHHHHHHHHHHHHc------C-CChhHHHHHHHHccCchhhHHHHHHHHhCCChhhHHHHHHHHHHHHHhHHH
Q 015929          139 FGCAAQYTIMPTSGVIVSKFL------G-LPPALSVGLILLSCCPGGTASNVVTLIARGDVPLSIVMTMCTTLGAVLFTP  211 (398)
Q Consensus       139 ~~l~~~~vl~Pll~~~l~~l~------~-l~~~~~~gl~l~~~~P~~~~s~v~t~~a~Gd~~la~~l~~lstlla~~~~P  211 (398)
                      ..++.+++++|+.+.++.+..      . .||-....+++..++|++.....+|++.|--.+-+.....-+-.++.+..-
T Consensus       318 giii~R~illP~~gl~iv~~A~kl~~ls~~DPlF~~VllLq~~~PpAi~lg~itqL~g~~e~Ecs~il~W~y~va~l~lt  397 (408)
T KOG2722|consen  318 GIIIGRYILLPLVGLGIVRLADKLGLLSTDDPLFQFVLLLQYASPPAINLGTITQLNGVAERECSVILFWTYAVASLSLT  397 (408)
T ss_pred             EEEEeeeeccchhhHHHHHHHHHhCcCCCCCchhhhhhhhhhcCCchhhHHHHHHHhhhhHHHHHHHHHHHHHHHHhhHH
Confidence            456678999999999876653      3 678889999999999999999999999998877777777777777666666


Q ss_pred             HHHHHH
Q 015929          212 LLTKIL  217 (398)
Q Consensus       212 l~l~ll  217 (398)
                      +|..++
T Consensus       398 vw~~~f  403 (408)
T KOG2722|consen  398 VWSVFF  403 (408)
T ss_pred             HHHHHH
Confidence            665554

>TIGR00698 conserved hypothetical integral membrane protein

Probab=89.84  E-value=2.9  Score=41.94  Aligned_cols=137  Identities=13%  Similarity=0.088  Sum_probs=77.7

Q ss_pred             HHHHHHHHHHHHhhc-ccccchhhhccchhHHHHHHHHHHHHcccCChHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHH
Q 015929           77 YPLYVTVGGVIACLK-PSAFGWFVQRGPASYSLSLGLIMLAMGLTLELKDLISLFMQRPLSILFGCAAQYTIMPTSGVIV  155 (398)
Q Consensus        77 ~p~~i~~~~llgl~~-P~~~~~~~~~~~~~~~~~l~~~mf~~Gl~l~~~~l~~~~~~~p~~l~~~l~~~~vl~Pll~~~l  155 (398)
                      ..+.+++|++++-.+ |+.-.+..+-..+.....+=.-...+|.+++++|+.+.-   ++.+...... .+..=++++.+
T Consensus        34 ~~~AillG~~l~n~~~~~~~~~~~~Gi~f~~k~lLr~gIVLlG~~l~~~~i~~~G---~~~l~~~~~~-v~~~~~~~~~~  109 (335)
T TIGR00698        34 LFLAILLGMVAGNTIYPQRDEEKKRGVLFAKPFLLRIGITLYGFRLTFPYIADVG---PNEIVADTLI-LTSTFFLTVFL  109 (335)
T ss_pred             HHHHHHHHHHHhccccccchhhccchHHHHHHHHHHHHHHHHCccccHHHHHHhh---HHHHHHHHHH-HHHHHHHHHHH
Confidence            445666666666432 221111111001122356666777889999999998753   3333332222 22222334556


Q ss_pred             H-HHcCCChhH----HHHHHHHccCchhhHHHHHHHHhCCChhhHHHHHHHHHHHHHhHHHHHHHHHh
Q 015929          156 S-KFLGLPPAL----SVGLILLSCCPGGTASNVVTLIARGDVPLSIVMTMCTTLGAVLFTPLLTKILA  218 (398)
Q Consensus       156 ~-~l~~l~~~~----~~gl~l~~~~P~~~~s~v~t~~a~Gd~~la~~l~~lstlla~~~~Pl~l~ll~  218 (398)
                      + +.+++|++.    +.|.-+|+++-....+++. +--+-|.++++..+.+-+.++++.+|++..++.
T Consensus       110 g~k~l~l~~~~~~Lia~GtsICGaSAi~A~a~~i-~A~~~~~a~ava~V~lfgt~am~l~P~l~~~l~  176 (335)
T TIGR00698       110 GSSRLKLDKQMSILLGAGSSICGAAAVAAIEPVI-KAEKEKVSVAIAIVVIFGTTGIFLYPSIYHYAS  176 (335)
T ss_pred             HHHHhCCChhHHHHHHcchhHHHHHHHHHhcccc-CCCccceeeeehHHHHHHHHHHHHHHHHHHHHc
Confidence            5 789988764    3344444433222222221 233457889999999999999999999887664

Members of this family are found so far only in one archaeal species, Archaeoglobus fulgidus, and in two related bacterial species, Haemophilus influenzae and Escherichia coli. It has 9 GES predicted transmembrane regions at conserved locations in all members. These proteins have a molecular weight of approximately 35 to 38 kDa.

>PRK05274 2-keto-3-deoxygluconate permease; Provisional

Probab=87.67  E-value=1.9  Score=43.08  Aligned_cols=107  Identities=14%  Similarity=0.195  Sum_probs=66.5

Q ss_pred             HHHHHHHHHHHcccCChHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHcCCChh---HHHHHHHHccCchhhH-HH
Q 015929          107 SLSLGLIMLAMGLTLELKDLISLFMQRPLSILFGCAAQYTIMPTSGVIVSKFLGLPPA---LSVGLILLSCCPGGTA-SN  182 (398)
Q Consensus       107 ~~~l~~~mf~~Gl~l~~~~l~~~~~~~p~~l~~~l~~~~vl~Pll~~~l~~l~~l~~~---~~~gl~l~~~~P~~~~-s~  182 (398)
                      ...+++.-|..|.+++.+++.+.   ....+++++. +.++.+...+...++++.++.   .+.+.. .+.+=|+.+ ..
T Consensus       202 ~~lLp~~~~~lG~~l~lq~i~~~---G~~GilL~~~-~~~~t~~~~~~~~Rl~~~~~g~~g~a~~tt-aG~aic~pAAva  276 (326)
T PRK05274        202 PVLIPFFAFALGNGIDLGTIITA---GLSGILLGVA-VVAVTGIPLYLADRLIGGGNGVAGAAAGST-AGNAVATPAAVA  276 (326)
T ss_pred             EEEHHHHHHHHhcceeHhHHHhc---CCcchhhhhh-HhhccchhhHhHhheeecCCCcchHHHHHH-HHHHHHHHHHHH
Confidence            44888888999999999888764   3445544443 456667778888899965554   222211 111112221 12


Q ss_pred             HHHHHhCCChhhHHHHHHHHHHHHHhHHHHHHHHHh
Q 015929          183 VVTLIARGDVPLSIVMTMCTTLGAVLFTPLLTKILA  218 (398)
Q Consensus       183 v~t~~a~Gd~~la~~l~~lstlla~~~~Pl~l~ll~  218 (398)
                      ...-..++..+-++..+....+++.++.|++..++.
T Consensus       277 a~~p~~~~~~~~at~~VA~~vivt~il~P~l~~~~~  312 (326)
T PRK05274        277 AADPSFAPFAPAATAQVAAAVIVTAILAPILTAWWS  312 (326)
T ss_pred             hhccccccchHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            233344566777777777777788888888887664

>PF05684 DUF819: Protein of unknown function (DUF819); InterPro: IPR008537 This family contains proteins of unknown function from archaeal, bacterial and plant species

Probab=86.72  E-value=40  Score=34.46  Aligned_cols=106  Identities=12%  Similarity=0.061  Sum_probs=64.8

Q ss_pred             HHHHHHHHHHHcccCChHHHHHHHhcCchHHHHHHHH----HHHHHHHHHHHHHHHcCCChhHHHHHHHHccCchhh-HH
Q 015929          107 SLSLGLIMLAMGLTLELKDLISLFMQRPLSILFGCAA----QYTIMPTSGVIVSKFLGLPPALSVGLILLSCCPGGT-AS  181 (398)
Q Consensus       107 ~~~l~~~mf~~Gl~l~~~~l~~~~~~~p~~l~~~l~~----~~vl~Pll~~~l~~l~~l~~~~~~gl~l~~~~P~~~-~s  181 (398)
                      ...++.+++.+-++.|.+++.+.-   +| .+..+++    ..+-.+ +++.+..-.-.++.+...-.+++.-=+|. +-
T Consensus        58 ~~~vPlai~LlLl~~Dlr~i~~~g---~~-~l~~F~~~~~g~viG~~-va~~l~~~~l~~~~wk~ag~l~gsyiGGs~N~  132 (378)
T PF05684_consen   58 TYLVPLAIPLLLLSADLRRILRLG---GR-LLLAFLIGAVGTVIGAV-VAFLLFGGFLGPEGWKIAGMLAGSYIGGSVNF  132 (378)
T ss_pred             HHHHHHHHHHHHHHccHHHHHHhh---HH-HHHHHHHHHHHHHHHHH-HHHHHHhhcccchHHHHHHHHHhcccCchhHH
Confidence            567777777777899888887653   22 2233222    222222 23333322212444555555555544433 33


Q ss_pred             HHHHHHhCCChhhHHHHHHHHHHHHHhHHHHHHHHH
Q 015929          182 NVVTLIARGDVPLSIVMTMCTTLGAVLFTPLLTKIL  217 (398)
Q Consensus       182 ~v~t~~a~Gd~~la~~l~~lstlla~~~~Pl~l~ll  217 (398)
                      ..+.+..+-+.++-....+..++.+.+-+.+++.+-
T Consensus       133 ~Av~~al~~~~~~~~a~~aaDnv~~~~~~~~l~~l~  168 (378)
T PF05684_consen  133 VAVAEALGVSDSLFAAALAADNVVMALWFAFLLALP  168 (378)
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            368888888999999999999999988888777654

>COG4651 RosB Kef-type K+ transport system, predicted NAD-binding component [Inorganic ion transport and metabolism]

Probab=86.51  E-value=37  Score=33.85  Aligned_cols=131  Identities=21%  Similarity=0.324  Sum_probs=74.5

Q ss_pred             HHHHHHHHhhcccccchhhhccchhHHHHHHHHHHHHcccCChHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHcC
Q 015929           81 VTVGGVIACLKPSAFGWFVQRGPASYSLSLGLIMLAMGLTLELKDLISLFMQRPLSILFGCAAQYTIMPTSGVIVSKFLG  160 (398)
Q Consensus        81 i~~~~llgl~~P~~~~~~~~~~~~~~~~~l~~~mf~~Gl~l~~~~l~~~~~~~p~~l~~~l~~~~vl~Pll~~~l~~l~~  160 (398)
                      .+.|++.|=.-|+...... ..+......+.+.||++|+..+.+|+...  |- . -+-+.+.|..+.-+.++++.++.+
T Consensus        37 L~AGv~~gpftpGFvad~~-La~~LAelGViLLmFgvGLhfslkdLLav--k~-i-AipgAl~qia~at~lg~gL~~~lg  111 (408)
T COG4651          37 LLAGVLAGPFTPGFVADQT-LAPELAELGVILLMFGVGLHFSLKDLLAV--KA-I-AIPGALAQIALATLLGMGLSSLLG  111 (408)
T ss_pred             HHHHHhcCCCCCCcccchh-HHHHHHHhhHHHHHHhcchheeHHHHhhH--HH-H-hcchHHHHHHHHHHHHhHHHHHcC
Confidence            3344444434455432221 12224567889999999999999999865  21 1 234677788888889999999886


Q ss_pred             CChhHHHHHHHHccCchhhHHH-HHHHHhC-------CChhhHH-HHHHHHHHHHHhHHHHHHHHHh
Q 015929          161 LPPALSVGLILLSCCPGGTASN-VVTLIAR-------GDVPLSI-VMTMCTTLGAVLFTPLLTKILA  218 (398)
Q Consensus       161 l~~~~~~gl~l~~~~P~~~~s~-v~t~~a~-------Gd~~la~-~l~~lstlla~~~~Pl~l~ll~  218 (398)
                      .+-  -.|+++--|...++.+. +-+.+-+       |..+..- .+-=+..+++.+..|.+-..+.
T Consensus       112 ws~--~~glvfGlaLS~aSTVvllraLqEr~lidt~rG~iAiGwLiveDl~mVl~Lvllpa~a~~~g  176 (408)
T COG4651         112 WSF--GTGIVFGLALSVASTVVLLRALEERQLIDTQRGRIAIGWLIVEDLAMVLALVLLPALAGVLG  176 (408)
T ss_pred             CCc--ccceeeeehhhhHHHHHHHHHHHHhccccccCceEEEeehhHHHHHHHHHHHHhHHHHhhhc
Confidence            542  22444434444444333 2232323       3332221 2223455666777787776664

>TIGR00932 2a37 transporter, monovalent cation:proton antiporter-2 (CPA2) family

Probab=83.35  E-value=43  Score=31.98  Aligned_cols=142  Identities=21%  Similarity=0.298  Sum_probs=73.2

Q ss_pred             HHHHHH-hhHHHHHHHHHHHHHhhcccccchhhh--ccchhHHHHHHHHHHHHcccCChHHHHHHHhcCchHHHHHHHHH
Q 015929           68 YLLSTA-ASLYPLYVTVGGVIACLKPSAFGWFVQ--RGPASYSLSLGLIMLAMGLTLELKDLISLFMQRPLSILFGCAAQ  144 (398)
Q Consensus        68 ~~l~~l-~~~~p~~i~~~~llgl~~P~~~~~~~~--~~~~~~~~~l~~~mf~~Gl~l~~~~l~~~~~~~p~~l~~~l~~~  144 (398)
                      ...+++ .-.....++.|+++|   |..+....+  .........+.++||..|++++.+++++.. |  +....+.. .
T Consensus         9 ~l~~~l~lP~~v~~il~GillG---p~~lg~i~~~~~~~~l~~igl~~llF~~Gl~~d~~~l~~~~-~--~~~~~~~~-~   81 (273)
T TIGR00932         9 PLSRRLGIPSVLGYLLAGVLIG---PSGLGLISNVEGVNHLAEFGVILLMFLIGLELDLERLWKLR-K--AAFGVGVL-Q   81 (273)
T ss_pred             HHHHHhCCCHHHHHHHHHHHhC---cccccCCCChHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHH-H--HHHHHHHH-H
Confidence            334444 223455566677666   433322211  011134678899999999999999999864 2  23333322 2


Q ss_pred             HHHHHH-H-HHHHHHHcCCCh--hHHHHHHHHccCchhhHHHHHHHHh--CCC-hhhHHHHHHHHHHHHHhHHHHHHHHH
Q 015929          145 YTIMPT-S-GVIVSKFLGLPP--ALSVGLILLSCCPGGTASNVVTLIA--RGD-VPLSIVMTMCTTLGAVLFTPLLTKIL  217 (398)
Q Consensus       145 ~vl~Pl-l-~~~l~~l~~l~~--~~~~gl~l~~~~P~~~~s~v~t~~a--~Gd-~~la~~l~~lstlla~~~~Pl~l~ll  217 (398)
                       ++.|. . ++...+.++.+.  ....|..+....|.. ...++.++-  +.+ .++......++-+++++.+-+.....
T Consensus        82 -~~~~~~~~~~~~~~~~~~~~~~~~~lg~~ls~Ts~~v-~~~il~~~~~~~~~~g~l~l~~~~~~D~~~i~~l~~~~~~~  159 (273)
T TIGR00932        82 -VLVPGVLLGLLLGHLLGLALGAAVVIGIILALSSTAV-VVQVLKERGLLKTPFGQTVLGILLFQDIAVVPLLALLPLLA  159 (273)
T ss_pred             -HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhHHHH-HHHHHHHcCcccChHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence             33452 2 344556666543  233344333332222 122333322  222 33455556678888887776665554


Q ss_pred             h
Q 015929          218 A  218 (398)
Q Consensus       218 ~  218 (398)
                      .
T Consensus       160 ~  160 (273)
T TIGR00932       160 T  160 (273)
T ss_pred             c
Confidence            3

>PRK10711 hypothetical protein; Provisional

Probab=82.97  E-value=12  Score=35.54  Aligned_cols=80  Identities=14%  Similarity=0.086  Sum_probs=48.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhCCCcchhHHHhhhhhcchhHHHHHHHHHhcCCc-cchHHHHHHHHHHHHHHHHHHH
Q 015929          301 VIILSVLLLHFAGFFVGYLSAAICGFKEPQRRAISIEVGMQNSSLGVVLATAHFTSS-MVALPPAMSAVIMNIMGSTLGF  379 (398)
Q Consensus       301 ~i~l~~~ll~~~~f~~G~~lar~~gl~~~~~~al~~~~g~rN~~Lai~lA~~~f~~p-~~alp~~i~~l~q~i~~s~la~  379 (398)
                      .++....+=.+++...+++++|.+|.+++-..++.=-  .=.+++|+.++....++| ..++-+++.+++-.+++..+-+
T Consensus        90 ~I~~~~~vG~~v~i~s~~~l~~~lg~~~~~~~Sl~pk--SVTtPIAm~is~~iGG~~sLta~~ViitGi~Ga~~g~~llk  167 (231)
T PRK10711         90 SIISICFIGSVVAMVTGTAVALWMGATPEIAASILPK--SVTTPIAMAVGGSIGGIPAISAVCVIFVGILGAVFGHTLLN  167 (231)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHhhh--hhhHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3445555556788889999999999987765553321  223477777777766543 3444445555555555555544


Q ss_pred             HHh
Q 015929          380 FWR  382 (398)
Q Consensus       380 ~~~  382 (398)
                      +.|
T Consensus       168 ~~r  170 (231)
T PRK10711        168 AMR  170 (231)
T ss_pred             HcC
Confidence            444

>PF04172 LrgB: LrgB-like family ; InterPro: IPR007300 The two products of the lrgAB operon are potential membrane proteins, and LrgA and LrgB are both thought to control murein hydrolase activity and penicillin tolerance []

Probab=82.30  E-value=9.6  Score=35.87  Aligned_cols=77  Identities=14%  Similarity=0.236  Sum_probs=47.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhCCCcchhHHHhhhhhcchh--HHHHHHHHHhcCCc-cchHHHHHHHHHHHHHHHHHH
Q 015929          302 IILSVLLLHFAGFFVGYLSAAICGFKEPQRRAISIEVGMQNS--SLGVVLATAHFTSS-MVALPPAMSAVIMNIMGSTLG  378 (398)
Q Consensus       302 i~l~~~ll~~~~f~~G~~lar~~gl~~~~~~al~~~~g~rN~--~Lai~lA~~~f~~p-~~alp~~i~~l~q~i~~s~la  378 (398)
                      ++....+=...+...+++++|.+|.+++...++    --|+.  ++|+.++....+++ ..+.-+++.+++-.+++..+-
T Consensus        80 il~~~~~g~~~~~~~~~~l~~~lgl~~~~~~Sl----~pkSVTtpiAi~is~~iGG~~sLta~~VvitGi~Ga~~g~~ll  155 (215)
T PF04172_consen   80 ILVGVLVGSLVSIFSAVLLARLLGLSPEIILSL----APKSVTTPIAIEISEQIGGIPSLTAVFVVITGILGAVLGPPLL  155 (215)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHH----HHHHhhHHHHHHHHHHhCChHHHHHHHHHHHhhHHHHhHHHHH
Confidence            444444445778888899999999977655553    23444  77777777776654 344444555555555555555


Q ss_pred             HHHh
Q 015929          379 FFWR  382 (398)
Q Consensus       379 ~~~~  382 (398)
                      +++|
T Consensus       156 k~~~  159 (215)
T PF04172_consen  156 KLLR  159 (215)
T ss_pred             hHcc
Confidence            4444

>COG1346 LrgB Putative effector of murein hydrolase [Cell envelope biogenesis, outer membrane]

Probab=81.98  E-value=12  Score=35.54  Aligned_cols=82  Identities=13%  Similarity=0.160  Sum_probs=54.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhCCCcchhHHHhhhhhcchhHHHHHHHHHhcCCc-cchHHHHHHHHHHHHHHHHHHH
Q 015929          301 VIILSVLLLHFAGFFVGYLSAAICGFKEPQRRAISIEVGMQNSSLGVVLATAHFTSS-MVALPPAMSAVIMNIMGSTLGF  379 (398)
Q Consensus       301 ~i~l~~~ll~~~~f~~G~~lar~~gl~~~~~~al~~~~g~rN~~Lai~lA~~~f~~p-~~alp~~i~~l~q~i~~s~la~  379 (398)
                      .+...+++=..++...+++++|.||++++-.+++.=-+  =.+++|+.++....+.| ..++-+++-+++-.+.|..+-+
T Consensus        92 ~I~~g~~vGs~~ai~s~~llak~~g~~~~~~~Sl~PkS--vTTpiAm~vs~~iGGip~ltav~Vi~tGi~Gavlg~~llk  169 (230)
T COG1346          92 PILAGVLVGSVVAIISGVLLAKLFGLSPELILSLLPKS--VTTPIAMEVSESIGGIPALTAVFVILTGILGAVLGPLLLK  169 (230)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHhcccc--cccHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444455567888899999999999888776654321  23477777777666544 4555556666777777777666


Q ss_pred             HHhcc
Q 015929          380 FWRYI  384 (398)
Q Consensus       380 ~~~~~  384 (398)
                      ++|-|
T Consensus       170 ~~~i~  174 (230)
T COG1346         170 LLRIR  174 (230)
T ss_pred             HhccC
Confidence            66533

>TIGR00659 conserved hypothetical protein TIGR00659

Probab=81.84  E-value=14  Score=35.04  Aligned_cols=77  Identities=16%  Similarity=0.190  Sum_probs=45.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhCCCcchhHHHhhhhhcchh--HHHHHHHHHhcCCc-cchHHHHHHHHHHHHHHHHHH
Q 015929          302 IILSVLLLHFAGFFVGYLSAAICGFKEPQRRAISIEVGMQNS--SLGVVLATAHFTSS-MVALPPAMSAVIMNIMGSTLG  378 (398)
Q Consensus       302 i~l~~~ll~~~~f~~G~~lar~~gl~~~~~~al~~~~g~rN~--~Lai~lA~~~f~~p-~~alp~~i~~l~q~i~~s~la  378 (398)
                      +.....+=...+...+++++|.+|.+++-..  ++  .-|+.  ++|+.++....++| ..++-+++.+++-.+++..+-
T Consensus        90 Il~~~~~G~~~~~~s~~~la~~lg~~~~i~~--Sl--~pkSvTtpiAm~vs~~iGG~~sLta~~vvitGi~Ga~~g~~ll  165 (226)
T TIGR00659        90 IILNVAVGSVIAIISGTLLALLLGLGPEIIA--SL--LPKSVTTPIAMHVSEMIGGIPAVTAVFVILTGLLGTVFGPMVL  165 (226)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHCcCHHHHH--Hh--hhHHhhHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4444444457788889999999999855444  33  33444  77777777776654 344444444444444444444


Q ss_pred             HHHh
Q 015929          379 FFWR  382 (398)
Q Consensus       379 ~~~~  382 (398)
                      +++|
T Consensus       166 ~~~~  169 (226)
T TIGR00659       166 RYFR  169 (226)
T ss_pred             HHcC
Confidence            4443

Members of this small but broadly distibuted (Gram-positive, Gram-negative, and Archaeal) family appear to have multiple transmembrane segments. The function is unknown. A homolog, LrgB of Staphylococcus aureus, in the same small superfamily but in an outgroup to this subfamily, is regulated by LytSR and is suggested to act as a murein hydrolase. Of the three paralogous proteins in B. subtilis, one is a full length member of this family, one lacks the C-terminal 60 residues and has an additional 128 N-terminal residues but branches within the family in a phylogenetic tree, and one is closely related to LrgB and part of the outgroup.

>PF03812 KdgT: 2-keto-3-deoxygluconate permease; InterPro: IPR004684 This family includes the characterised 2-Keto-3-Deoxygluconate transporters from Bacillus subtilis and Erwinia chrysanthemi

Probab=80.89  E-value=7.3  Score=38.58  Aligned_cols=106  Identities=15%  Similarity=0.202  Sum_probs=64.2

Q ss_pred             HHHHHHHHHHHHcccCChHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHc-CCChhHHHHHHHHc------cCchh
Q 015929          106 YSLSLGLIMLAMGLTLELKDLISLFMQRPLSILFGCAAQYTIMPTSGVIVSKFL-GLPPALSVGLILLS------CCPGG  178 (398)
Q Consensus       106 ~~~~l~~~mf~~Gl~l~~~~l~~~~~~~p~~l~~~l~~~~vl~Pll~~~l~~l~-~l~~~~~~gl~l~~------~~P~~  178 (398)
                      ....++++-|..|.+++++++.+.   -...+++++.. +++.-...+..-+.. +-++..  |.-.-.      +.|..
T Consensus       199 ~~~lIPF~~f~lGa~inl~~i~~a---Gl~GIlLgv~~-~~vtg~~~~~~dr~i~~~~g~a--G~A~sstAGnavatPaa  272 (314)
T PF03812_consen  199 VPILIPFFGFALGAGINLSNIIKA---GLSGILLGVIV-VVVTGIPLYLADRLILKGNGVA--GAAISSTAGNAVATPAA  272 (314)
T ss_pred             CCeeeehhhhhhcCCCCHHHHHHh---CcchHHHHHHH-HHHHhHHHHHHHHHHcCCCCce--eehHHhhhhhhhhhhHH
Confidence            456889999999999999998874   23456666654 334444455555654 333221  222211      12222


Q ss_pred             hHHHHHHHHhCCChhhHHHHHHHHHHHHHhHHHHHHHHHhC
Q 015929          179 TASNVVTLIARGDVPLSIVMTMCTTLGAVLFTPLLTKILAG  219 (398)
Q Consensus       179 ~~s~v~t~~a~Gd~~la~~l~~lstlla~~~~Pl~l~ll~g  219 (398)
                      .+..  --....-++.++..++.+.+++.+++|++..++..
T Consensus       273 iA~~--dP~~~~~~~~ATaQvAaavIvTail~P~lt~~~~k  311 (314)
T PF03812_consen  273 IAAA--DPSFAPYAASATAQVAAAVIVTAILTPILTSWWAK  311 (314)
T ss_pred             HHHh--ChhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            2211  11223456777888888999999999998888754

There are homologs of this protein found in both Gram-positive and Gram-negative bacteria. In E. chrysanthemi, a phytopathogenic bacterium, degraded pectin products from plant cell walls are transported by 2-keto-3-deoxygluconate permease into the bacterial cell to provide a carbon and energy source []. 2-keto-3-deoxygluconate permease can mediate the uptake of glucuronate with a low affinity [].; GO: 0015649 2-keto-3-deoxygluconate:hydrogen symporter activity, 0008643 carbohydrate transport, 0046411 2-keto-3-deoxygluconate transport, 0016021 integral to membrane

>PRK04288 antiholin-like protein LrgB; Provisional

Probab=80.47  E-value=17  Score=34.62  Aligned_cols=78  Identities=13%  Similarity=0.207  Sum_probs=47.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhCCCcchhHHHhhhhhcchh--HHHHHHHHHhcCCc-cchHHHHHHHHHHHHHHHHH
Q 015929          301 VIILSVLLLHFAGFFVGYLSAAICGFKEPQRRAISIEVGMQNS--SLGVVLATAHFTSS-MVALPPAMSAVIMNIMGSTL  377 (398)
Q Consensus       301 ~i~l~~~ll~~~~f~~G~~lar~~gl~~~~~~al~~~~g~rN~--~Lai~lA~~~f~~p-~~alp~~i~~l~q~i~~s~l  377 (398)
                      .++...++=..++...+++++|.+|.+++-..++    --|+.  ++|+.++....++| ..++-+++.+++-.+++..+
T Consensus        95 ~Il~~~~vG~~~~i~s~~~la~~lgl~~~~~~Sl----~pKSVTtPIAm~is~~iGG~psLtA~~ViitGi~Gai~g~~l  170 (232)
T PRK04288         95 QILGGIVVGSVCSVLIIYLVAKLIQLDNAVMASM----LPQAATTAIALPVSAGIGGIKEITSFAVIFNAVIIYALGAKF  170 (232)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHH----hhHhhhHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence            3445555556778888999999999987655443    33444  77777777766554 34444445555555555544


Q ss_pred             HHHHh
Q 015929          378 GFFWR  382 (398)
Q Consensus       378 a~~~~  382 (398)
                      -++.|
T Consensus       171 lk~~~  175 (232)
T PRK04288        171 LKLFR  175 (232)
T ss_pred             HHHcC
Confidence            44443

>TIGR00844 c_cpa1 na(+)/h(+) antiporter

Probab=80.40  E-value=1.1e+02  Score=34.55  Aligned_cols=55  Identities=13%  Similarity=0.015  Sum_probs=34.0

Q ss_pred             hHHHHHHHHHHHHHhhcccccchhh----h-ccchhHHHHHHHHHHHHcccCChHHHHHH
Q 015929           75 SLYPLYVTVGGVIACLKPSAFGWFV----Q-RGPASYSLSLGLIMLAMGLTLELKDLISL  129 (398)
Q Consensus        75 ~~~p~~i~~~~llgl~~P~~~~~~~----~-~~~~~~~~~l~~~mf~~Gl~l~~~~l~~~  129 (398)
                      ....+.+++|+++|...-+.+....    . .......+++.+.+|..|++++.+.+++.
T Consensus        39 s~~~v~Ll~GiilGP~~l~~idP~~~g~~d~i~leIteIvL~I~LFa~Gl~L~~~~Lrr~   98 (810)
T TIGR00844        39 GESMVASIFGLIVGPHCLNWFNPLSWGNTDSITLEISRILLCLQVFAVSVELPRKYMLKH   98 (810)
T ss_pred             cHHHHHHHHHHHhhhhhhccCChhhcccchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHh
Confidence            3466777777777754322222110    0 00012246899999999999999999875

This model is specific for the fungal members of this family.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	398
3zux_A	332	Crystal Structure Of A Bacterial Homologue Of The B		5e-29
3zuy_A	323	Crystal Structure Of A Bacterial Homologue Of The B		1e-28

>pdb|3ZUX|A Chain A, Crystal Structure Of A Bacterial Homologue Of The Bile Acid Sodium Symporter Asbt Length = 332

Iteration: 1
 Score =  125 bits (313), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 104/310 (33%), Positives = 161/310 (51%), Gaps = 23/310 (7%)
Query: 92  PSAFGWFVQRGPASYSLSLGLIMLAMGLTLELKDLISLFMQRPLSILFGCAAQYTIMPTS 151
           P  F W    GP    L LG+IM  MGLTL+  D   LF + P  ++ G  AQ+ IMP +
Sbjct: 35  PDTFKW---AGPYIPWL-LGIIMFGMGLTLKPSDFDILF-KHPKVVIIGVIAQFAIMPAT 89
Query: 152 GVIVSKFLGLPPALSVGLILLSCCPGGTASNVVTLIARGDVPLSIVMTMCTTLGAVLFTP 211
              +SK L LP  ++VG+IL+ CCPGGTASNV+T +ARG+V LS+ +T  +TL + L TP
Sbjct: 90  AWCLSKLLNLPAEIAVGVILVGCCPGGTASNVMTYLARGNVALSVAVTSVSTLTSPLLTP 149
Query: 212 LLTKILAGTYVPVDAVKLSISTLQSAFPAAVKVVTPFTPLFAVLMSSLLACSVFSENLVR 271
            +  +LAG  + + A  + +S ++        V+ P   +  +++  +L     +E L  
Sbjct: 150 AIFLMLAGEMLEIQAAGMLMSIVK-------MVLLPI--VLGLIVHKVLGSK--TEKLTD 198
Query: 272 LKSSVVGAALTXXXXXXXXXXXXXXGELGVIILSVLLLHFA-GFFVGYLSAAICGFKEPQ 330
               V  AA+                E G++I +V++LH   G+ +G+ +A   G     
Sbjct: 199 ALPLVSVAAIVLIIGAVVGASKGKIMESGLLIFAVVVLHNGIGYLLGFFAAKWTGLPYDA 258
Query: 331 RRAISIEVGMQNS-SLGVVLATAHFTSSMVALPPAMSAVIMNIMGSTLGFFW-----RYI 384
           ++A++IEVGMQNS     + A     + +VA+P A+ +V  NI GS L  +W     ++ 
Sbjct: 259 QKALTIEVGMQNSGLAAALAAAHFAAAPVVAVPGALFSVWHNISGSLLATYWAAKAGKHK 318
Query: 385 DPSDSKTSPK 394
            P D   S  
Sbjct: 319 KPLDRAGSEN 328

>pdb|3ZUY|A Chain A, Crystal Structure Of A Bacterial Homologue Of The Bile Acid Sodium Symporter Asbt Length = 323

Iteration: 1
 Score =  124 bits (310), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 88/253 (34%), Positives = 137/253 (54%), Gaps = 17/253 (6%)
Query: 92  PSAFGWFVQRGPASYSLSLGLIMLAMGLTLELKDLISLFMQRPLSILFGCAAQYTIMPTS 151
           P  F W    GP    L LG+IM  MGLTL+  D   LF + P  ++ G  AQ+ IMP +
Sbjct: 30  PDTFKW---AGPYIPWL-LGIIMFGMGLTLKPSDFDILF-KHPKVVIIGVIAQFAIMPAT 84
Query: 152 GVIVSKFLGLPPALSVGLILLSCCPGGTASNVVTLIARGDVPLSIVMTMCTTLGAVLFTP 211
             ++SK L LP  ++VG+IL+ CCPGGTASNV+T +ARG+V LS+ +T  +TL + L TP
Sbjct: 85  AWLLSKLLNLPAEIAVGVILVGCCPGGTASNVMTYLARGNVALSVAVTSVSTLISPLLTP 144
Query: 212 LLTKILAGTYVPVDAVKLSISTLQSAFPAAVKVVTPFTPLFAVLMSSLLACSVFSENLVR 271
            +  +LAG  + + A  + +S ++        V+ P   +  +++  +L     +E L  
Sbjct: 145 AIFLMLAGEMLEIQAAGMLMSIVK-------MVLLPI--VLGLIVHKVLGSK--TEKLTD 193
Query: 272 LKSSVVGAALTXXXXXXXXXXXXXXGELGVIILSVLLLHFA-GFFVGYLSAAICGFKEPQ 330
               V  AA+                E G++I +V++LH   G+ +G+ +A   G     
Sbjct: 194 ALPLVSVAAIVLIIGAVVGASKGKIMESGLLIFAVVVLHNGIGYLLGFFAAKWTGLPYDA 253
Query: 331 RRAISIEVGMQNS 343
           ++ ++IEVGMQNS
Sbjct: 254 QKTLTIEVGMQNS 266

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	398
3zux_A	332	Transporter, ASBTNM; transport protein, membrane p	3e-81
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-05

>3zux_A Transporter, ASBTNM; transport protein, membrane protein; HET: TCH LDA PTY; 2.20A {Neisseria meningitidis} PDB: 3zuy_A* Length = 332

 Score =  251 bits (643), Expect = 3e-81
 Identities = 103/347 (29%), Positives = 163/347 (46%), Gaps = 42/347 (12%)

Query: 66  WEYLLSTAASLYPLYVTVGGVIACLKPSAFGWFVQRGPASYSLSLGLIMLAMGLTLELKD 125
              + S     + L+  +    A   P  F W            LG+IM  MGLTL+  D
Sbjct: 9   LSKISSFIGKTFSLWAALFAAAAFFAPDTFKWAG----PYIPWLLGIIMFGMGLTLKPSD 64

Query: 126 LISLFMQRPLSILFGCAAQYTIMPTSGVIVSKFLGLPPALSVGLILLSCCPGGTASNVVT 185
              LF + P  ++ G  AQ+ IMP +   +SK L LP  ++VG+IL+ CCPGGTASNV+T
Sbjct: 65  FDILF-KHPKVVIIGVIAQFAIMPATAWCLSKLLNLPAEIAVGVILVGCCPGGTASNVMT 123

Query: 186 LIARGDVPLSIVMTMCTTLGAVLFTPLLTKILAGTYVPVDAVKLSISTLQ---------- 235
            +ARG+V LS+ +T  +TL + L TP +  +LAG  + + A  + +S ++          
Sbjct: 124 YLARGNVALSVAVTSVSTLTSPLLTPAIFLMLAGEMLEIQAAGMLMSIVKMVLLPIVLGL 183

Query: 236 ---SAFPAAVKVVTPFTPLFAVLMSSLLACSVFSENLVRLKSSVVGAALTSDLSLISRIK 292
                  +  + +T   PL +V    L+  +V   +  ++  S                 
Sbjct: 184 IVHKVLGSKTEKLTDALPLVSVAAIVLIIGAVVGASKGKIMES----------------- 226

Query: 293 SILSGELGVIILSVLLLHFAGFFVGYLSAAICGFKEPQRRAISIEVGMQNSSLGVVLATA 352
                   +I   V+L +  G+ +G+ +A   G     ++A++IEVGMQNS L   LA A
Sbjct: 227 ------GLLIFAVVVLHNGIGYLLGFFAAKWTGLPYDAQKALTIEVGMQNSGLAAALAAA 280

Query: 353 HFTSS-MVALPPAMSAVIMNIMGSTLGFFWRYIDPSDSKTSPKTVDK 398
           HF ++ +VA+P A+ +V  NI GS L  +W        K   +   +
Sbjct: 281 HFAAAPVVAVPGALFSVWHNISGSLLATYWAAKAGKHKKPLDRAGSE 327

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 46.0 bits (108), Expect = 2e-05
 Identities = 57/407 (14%), Positives = 98/407 (24%), Gaps = 145/407 (35%)

Query: 30  TPLAISSSPPSFK----NLQITRCVNENSQLLP--VTEAKPRWEYLLSTAASLYPL---- 79
           +P+      PS        Q  R  N+N       V+  +P  +  L  A  L  L    
Sbjct: 96  SPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLK--LRQA--LLELRPAK 151

Query: 80  YVTVGGVIACLKPS---------------AFG--WFVQRGPASYSLSLGLIMLAMGLTLE 122
            V + GV+   K                  F   W          L+L        +   
Sbjct: 152 NVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFW----------LNLKNCNSPETVLEM 201

Query: 123 LKDLISLFMQRPLSILFGCAAQYTIMPTSGVI--VSKFLGLPP---ALSVGLILLSCCPG 177
           L+ L+        S      +    +    +   + + L   P    L   L+L      
Sbjct: 202 LQKLLYQIDPNWTSRSDH--SSNIKLRIHSIQAELRRLLKSKPYENCL---LVL------ 250

Query: 178 GTASNV--VTLIARGDVPLSIVMTMCTTLGAVLFTPLLTKILAGTYVPVDA-VKLSISTL 234
               NV         ++        C  L       L T+            V   +S  
Sbjct: 251 ---LNVQNAKAWNAFNL-------SCKIL-------LTTR---------FKQVTDFLSAA 284

Query: 235 QSAFPAAVKVVTPFTP-----LFA-VL---MSSL--LACSVFSENLVRLKSSVVGAALTS 283
            +   +        TP     L    L      L     +         + S++  ++  
Sbjct: 285 TTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNP-----RRLSIIAESIRD 339

Query: 284 DLSLISRIKSILSGELGVII-LSVLLLHFAGFFVGYLSAAICGFKEPQRRAISIEVGMQN 342
            L+     K +   +L  II  S+ +L  A +   +   ++  F                
Sbjct: 340 GLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSV--FPP-------------- 383

Query: 343 SSLGVVLATAHFTSSMVALPPAMSAVIMNIMGSTLGFFWRYIDPSDS 389
                                       +I    L   W  +  SD 
Sbjct: 384 ---SA-----------------------HIPTILLSLIWFDVIKSDV 404

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	398
3zux_A	332	Transporter, ASBTNM; transport protein, membrane p	100.0

>3zux_A Transporter, ASBTNM; transport protein, membrane protein; HET: TCH LDA PTY; 2.20A {Neisseria meningitidis} PDB: 3zuy_A*

Probab=100.00  E-value=7e-49  Score=388.32  Aligned_cols=304  Identities=33%  Similarity=0.545  Sum_probs=268.7

Q ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHHhhcccccchhhhccchhHHHHHHHHHHHHcccCChHHHHHHHhcCchHHHHHHHH
Q 015929           64 PRWEYLLSTAASLYPLYVTVGGVIACLKPSAFGWFVQRGPASYSLSLGLIMLAMGLTLELKDLISLFMQRPLSILFGCAA  143 (398)
Q Consensus        64 ~~~~~~l~~l~~~~p~~i~~~~llgl~~P~~~~~~~~~~~~~~~~~l~~~mf~~Gl~l~~~~l~~~~~~~p~~l~~~l~~  143 (398)
                      +.++|+.+++++++++++++++++|+.+|+.+.+...    .+.++++++||.+|++++.+|+++.+ +|||.+..+++.
T Consensus         7 ~~l~~~~~~l~~~~~l~i~~~~~lg~~~P~~~~~~~~----~i~~~l~~~mf~~G~~l~~~~l~~~~-~~~~~~~~~l~~   81 (332)
T 3zux_A            7 NILSKISSFIGKTFSLWAALFAAAAFFAPDTFKWAGP----YIPWLLGIIMFGMGLTLKPSDFDILF-KHPKVVIIGVIA   81 (332)
T ss_dssp             CHHHHHHHHHHHTHHHHHHHHHHHHHHCGGGTGGGGG----GHHHHHHHHHHHHHHHCCGGGGHHHH-HSHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHcchhhhhhHH----HHHHHHHHHHHHHHhCCCHHHHHHHH-hCcHHHHHHHHH
Confidence            3578889999999999999999999999998888764    56789999999999999999999998 899999999999


Q ss_pred             HHHHHHHHHHHHHHHcCCChhHHHHHHHHccCchhhHHHHHHHHhCCChhhHHHHHHHHHHHHHhHHHHHHHHHhCcccc
Q 015929          144 QYTIMPTSGVIVSKFLGLPPALSVGLILLSCCPGGTASNVVTLIARGDVPLSIVMTMCTTLGAVLFTPLLTKILAGTYVP  223 (398)
Q Consensus       144 ~~vl~Pll~~~l~~l~~l~~~~~~gl~l~~~~P~~~~s~v~t~~a~Gd~~la~~l~~lstlla~~~~Pl~l~ll~g~~v~  223 (398)
                      |++++|+++|+++++++++++++.|+++++||||+++|++||+++|||+++++.++.+||+++++++|+++.++.|++++
T Consensus        82 ~~vi~Pll~~~l~~~~~l~~~~~~Glil~~~~P~~~~s~v~t~~a~Gd~~la~~~~~~stll~~~~~Pl~~~l~~g~~~~  161 (332)
T 3zux_A           82 QFAIMPATAWCLSKLLNLPAEIAVGVILVGCCPGGTASNVMTYLARGNVALSVAVTSVSTLTSPLLTPAIFLMLAGEMLE  161 (332)
T ss_dssp             HHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHSCCCTHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGH
T ss_pred             HHHHHHHHHHHHHHHhCCChHHHHHHHHHhcCCchhHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999998888


Q ss_pred             cChHHHHHHH-------------HHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhhhhHHhhhhhhhhhhcchhhhHHH
Q 015929          224 VDAVKLSIST-------------LQSAFPAAVKVVTPFTPLFAVLMSSLLACSVFSENLVRLKSSVVGAALTSDLSLISR  290 (398)
Q Consensus       224 vd~~~~~l~l-------------lr~~~p~~~~~i~~~~~~is~~~llliv~~v~a~n~~~i~~~i~~~~~~~~~~~~~~  290 (398)
                      +|++.++.++             +|+++|+..+++++..+.++..+++++++.+++.|.+.+.+                
T Consensus       162 v~~~~~~~~l~~~vllP~~lG~l~r~~~~~~~~~~~~~l~~~s~~~illiv~~~~~~~~~~~~~----------------  225 (332)
T 3zux_A          162 IQAAGMLMSIVKMVLLPIVLGLIVHKVLGSKTEKLTDALPLVSVAAIVLIIGAVVGASKGKIME----------------  225 (332)
T ss_dssp             HHHHHHHHHHHHHTHHHHHHHHHHHHHHGGGGHHHHTTHHHHHHHHHHHHHHHHHHHTHHHHHH----------------
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHHhhhHHHHh----------------
Confidence            9988776543             28999998899999999999999999988888888665432                


Q ss_pred             HhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcchhHHHhhhhhcchhHHHHHHHHHhcC-CccchHHHHHHHHH
Q 015929          291 IKSILSGELGVIILSVLLLHFAGFFVGYLSAAICGFKEPQRRAISIEVGMQNSSLGVVLATAHFT-SSMVALPPAMSAVI  369 (398)
Q Consensus       291 ~~~~l~~~~~~i~l~~~ll~~~~f~~G~~lar~~gl~~~~~~al~~~~g~rN~~Lai~lA~~~f~-~p~~alp~~i~~l~  369 (398)
                             ....++..+++++.++|.+||+++|++|++++|++|+++|+|+||+++|+++|..+|+ +|.+++|.++|++|
T Consensus       226 -------~~~~v~~~~~l~~~~~~~lg~~~~r~~~~~~~~~~ti~~e~G~qNs~lai~lA~~~F~~~p~~alp~~iy~~~  298 (332)
T 3zux_A          226 -------SGLLIFAVVVLHNGIGYLLGFFAAKWTGLPYDAQKALTIEVGMQNSGLAAALAAAHFAAAPVVAVPGALFSVW  298 (332)
T ss_dssp             -------HHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHCCCHHHHHHHHHHHSTTCGGGGHHHHHHHHH
T ss_pred             -------ccHHHHHHHHHHHHHHHHHHHHHHHHhCCCHhHhhhhhhhhhhccHHHHHHHHHHHcCCCchHHHHHHHHHHH
Confidence                   1124556678889999999999999999999999999999999999999999999996 68999999999999


Q ss_pred             HHHHHHHHHHHHhccCCCCCCCCCCcc
Q 015929          370 MNIMGSTLGFFWRYIDPSDSKTSPKTV  396 (398)
Q Consensus       370 q~i~~s~la~~~~~~~~~~~~~~~~~~  396 (398)
                      |++.+++++.+|+|++++++ +.+||.
T Consensus       299 q~i~~~~la~~~~~~~~~~~-~~~~~~  324 (332)
T 3zux_A          299 HNISGSLLATYWAAKAGKHK-KPLDRA  324 (332)
T ss_dssp             HHHHHHHHHHHHHHHC-----------
T ss_pred             HHHHHHHHHHHHHcCccccC-Cchhhc
Confidence            99999999999998875443 444443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00