Citrus Sinensis ID: 015934

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------40
MSFKSILQDVKGELGSISRKGFDVRFGYGRSRSHRVVQDCSVVVDAFKQSCWANMPPELLRDVLLRIEASETTWPPRKNVVACAGVCRSWREIMKEIVKTLEVSGKLTFPISLKQPGPRGSLLQCYIKRNRSSQTYYLYLGLNQSSNDDGKFLLAARKCRRPTCTDYIISLNCDDVSKGSSTYIGRSNFLGTKFTIYDGHPPNAEARVTKCRSTRQVNMKQVSPKLLAGNYHVAHISYELNVLGSRGPRRMQCVMDAIPASSIEPGGVAPTQTEFHHSGLDSFPSIPFFRSKSIRAENFQNDQKEGLLVLRNKAPRWHEQLQCWCLNFNGRVTVASVKNFQLVASLENGVAGQEHENVILQFGKVGKDVFTMDYQYPISAFQAFAICLSSFDTKIACE
cccHHHHHHHHccccccccccccEEcccccccccccccccccccccccccccccccHHHHHHHHHHHHccccccccccccEEEccccccHHHHHHHHHcccccccccccccccccccccccEEEEEEEEEcccccEEEcccccccccccccEEEEEEEccccccEEEEEEccccccccccccEEEEEcccEEEEEEEcccccccccccccccccccccccccccccccccEEEEEEEEEEcccccccccEEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEcccccccccccEEEEccccEEEccccccEEEccccccccccccccEEEEEEEEcccEEEEEccccccHHHHHHHHHHccccccccc
ccHHHHHHHHHcccccccccccEEEEcccccccccccHHcccccHHHcccccccccHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHccccccccEEEEEEEccccccccEEEEEEEEcccccEEEEEEEcccccccccEEEEEEEEcccccccEEEEEEcccccccccccEEcEEcccccEEEEEccccccccccccccccccEEcccccccccccccEEEEEEEEEEEccccccccEEEEEEcccccccccccccccccccccccccccccccccccccccccHHHHccccccEEEEEEcccEEEccccEEEEEEccEEEEcEccEEEEEEcccccEcccccccccEEEEEEEccEEEEEEcccccHHHHHHHHHHHHHcccccc
MSFKSILQDVKgelgsisrkgfdvrfgygrsrshrvvqDCSVVVDAFKqscwanmppeLLRDVLLRIEasettwpprknvvacAGVCRSWREIMKEIVKTLEVsgkltfpislkqpgprgsllQCYIKRNRSSQTYYLYLGLNQSSNDDGKFLLAArkcrrptctdyiislncddvskgsstyigrsnflgtkftiydghppnaearVTKCRSTRqvnmkqvspkllagnyHVAHISYELNvlgsrgprrmqcvmdaipassiepggvaptqtefhhsgldsfpsipffrsksiraenfqnDQKEGLLVLRNKAPRWHEQLQCWCLNFNGRVTVASVKNFQLVASlengvagqehENVILQFgkvgkdvftmdyQYPISAFQAFAICLSSfdtkiace
msfksilqdvkgelgsisrkgfDVRFGYGrsrshrvvqdCSVVVDAFKQSCWANMPPELLRDVLLRIEasettwpprknvvacAGVCRSWREIMKEIVKTLevsgkltfpislkqpgprgSLLQCYIKRNRSSQTYYLYLGLNQSSNDDGKFLLAARKCRRPTCTDyiislncddvskgSSTYIGRSNFLGTKFTIYDGHPPNAEARVTKCRSTRQVNMKQVSPKLLAGNYHVAHISYELNVLGSRGPRRMQCVMDAIPASSIEPGGVAPTQTEFHHSGLDSFPSIPFFRSKSIRAENFQNDQKEGLLVLRNKAPRWHEQLQCWCLNFNGRVTVASVKNFQLVASLENGVAGQEHENVILQFGKVGKDVFTMDYQYPISAFQAFAICLSSFDTKIACE
MSFKSILQDVKGELGSISRKGFDVRFGYGRSRSHRVVQDCSVVVDAFKQSCWANMPPELLRDVLLRIEASETTWPPRKNVVACAGVCRSWREIMKEIVKTLEVSGKLTFPISLKQPGPRGSLLQCYIKRNRSSQTYYLYLGLNQSSNDDGKFLLAARKCRRPTCTDYIISLNCDDVSKGSSTYIGRSNFLGTKFTIYDGHPPNAEARVTKCRSTRQVNMKQVSPKLLAGNYHVAHISYELNVLGSRGPRRMQCVMDAIPASSIEPGGVAPTQTEFHHSGLDSFPSIPFFRSKSIRAENFQNDQKEGLLVLRNKAPRWHEQLQCWCLNFNGRVTVASVKNFQLVASLENGVAGQEHENVILQFGKVGKDVFTMDYQYPISAFQAFAICLSSFDTKIACE
**************GSISRKGFDVRFGYGRSRSHRVVQDCSVVVDAFKQSCWANMPPELLRDVLLRIEASETTWPPRKNVVACAGVCRSWREIMKEIVKTLEVSGKLTFPISLKQPGPRGSLLQCYIKRNRSSQTYYLYLGLNQSSNDDGKFLLAARKCRRPTCTDYIISLNCDDVSKGSSTYIGRSNFLGTKFTIYDGHP******VTKC*****VNMKQVSPKLLAGNYHVAHISYELNVLGSRGPRRMQCVMDAI************************FPSIPFFR*************KEGLLVLRNKAPRWHEQLQCWCLNFNGRVTVASVKNFQLVASLENGVAGQEHENVILQFGKVGKDVFTMDYQYPISAFQAFAICLSSFDTKI***
*SFKSILQDVKG******************************************MPPELLRDVLL*I****************************************TFPISLKQPGPRGSLLQCYIKRNRSSQTYYLYLGLNQSSNDDGKFLLAARKCRRPTCTDYIISLNCDDVSKGSSTYIGRSNFLGTKFTIYDGHP**************************AGNYHVAHISYELNVLGSRGPRRMQCVM**************************************************GLLVLRNKAPRWHEQLQCWCLNFNGRVTVASVKNFQL**SL***VAGQEHENVILQFGKVGKDVFTMDYQYPISAFQAFAICLSSFDTKIACE
MSFKSILQDVKGELGSISRKGFDVRFGYGRSRSHRVVQDCSVVVDAFKQSCWANMPPELLRDVLLRIEASETTWPPRKNVVACAGVCRSWREIMKEIVKTLEVSGKLTFPISLKQPGPRGSLLQCYIKRNRSSQTYYLYLGLNQSSNDDGKFLLAARKCRRPTCTDYIISLNCDDVSKGSSTYIGRSNFLGTKFTIYDGHPPNAEARVTKCRSTRQVNMKQVSPKLLAGNYHVAHISYELNVLGSRGPRRMQCVMDAIPASSIEPGGVAPTQTEFHHSGLDSFPSIPFFRSKSIRAENFQNDQKEGLLVLRNKAPRWHEQLQCWCLNFNGRVTVASVKNFQLVASLENGVAGQEHENVILQFGKVGKDVFTMDYQYPISAFQAFAICLSSFDTKIACE
*************LGSISRKGFDVR******************V**FKQSCWANMPPELLRDVLLRIEASETTWPPRKNVVACAGVCRSWREIMKEIVKTLEVSGKLTFPISLKQPGPRGSLLQCYIKRNRSSQTYYLYLGLNQSSNDDGKFLLAARKCRRPTCTDYIISLNCDDVSKGSSTYIGRSNFLGTKFTIYDGHP*****************MKQVSPKLLAGNYHVAHISYELNVLGSRGPRRMQCVMDAIPASSIEPGGVA**********************************KEGLLVLRNKAPRWHEQLQCWCLNFNGRVTVASVKNFQLVASLENGVAGQEHENVILQFGKVGKDVFTMDYQYPISAFQAFAICLSSFDTKIAC*
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MSFKSILQDVKGELGSISRKGFDVRFGYGRSRSHRVVQDCSVVVDAFKQSCWANMPPELLRDVLLRIEASETTWPPRKNVVACAGVCRSWREIMKEIVKTLEVSGKLTFPISLKQPGPRGSLLQCYIKRNRSSQTYYLYLGLNQSSNDDGKFLLAARKCRRPTCTDYIISLNCDDVSKGSSTYIGRSNFLGTKFTIYDGHPPNAEARVTKCRSTRQVNMKQVSPKLLAGNYHVAHISYELNVLGSRGPRRMQCVMDAIPASSIEPGGVAPTQTEFHHSGLDSFPSIPFFRSKSIRAENFQNDQKEGLLVLRNKAPRWHEQLQCWCLNFNGRVTVASVKNFQLVASLENGVAGQEHENVILQFGKVGKDVFTMDYQYPISAFQAFAICLSSFDTKIACE
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query398 2.2.26 [Sep-21-2011]
Q8VY21406 Tubby-like F-box protein yes no 1.0 0.980 0.812 0.0
Q10LG8403 Tubby-like F-box protein yes no 1.0 0.987 0.679 1e-161
Q8H485406 Tubby-like F-box protein yes no 0.992 0.972 0.645 1e-154
Q2QXB2445 Tubby-like F-box protein no no 1.0 0.894 0.534 1e-128
Q75HX5445 Tubby-like F-box protein no no 1.0 0.894 0.523 1e-126
Q53PP5440 Tubby-like F-box protein no no 0.997 0.902 0.521 1e-124
Q9SQU1380 Tubby-like F-box protein no no 0.929 0.973 0.568 1e-121
Q6NPQ1389 Tubby-like F-box protein no no 0.909 0.930 0.590 1e-120
Q944S3429 Tubby-like F-box protein no no 0.989 0.918 0.510 1e-119
Q69U54451 Tubby-like F-box protein no no 0.989 0.873 0.516 1e-119
>sp|Q8VY21|TLP3_ARATH Tubby-like F-box protein 3 OS=Arabidopsis thaliana GN=TULP3 PE=2 SV=1 Back     alignment and function desciption
 Score =  662 bits (1708), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 330/406 (81%), Positives = 364/406 (89%), Gaps = 8/406 (1%)

Query: 1   MSFKSILQDVKGELGSISRKGFDVRFGYGRSRSHRVVQDCSVVVDAFKQSCWANMPPELL 60
           MSFKS++QD++GELGSISRKGFDVRFGYGRSRS RVVQD SV VDAFKQSCWA+MPPELL
Sbjct: 1   MSFKSLIQDMRGELGSISRKGFDVRFGYGRSRSQRVVQDTSVPVDAFKQSCWASMPPELL 60

Query: 61  RDVLLRIEASETTWPPRKNVVACAGVCRSWREIMKEIVKTLEVSGKLTFPISLKQPGPRG 120
           RDVL+RIE SE TWP RKNVV+CAGVCR+WREI+KEIV+  E+S KLTFPISLKQPGPRG
Sbjct: 61  RDVLMRIEQSEDTWPSRKNVVSCAGVCRNWREIVKEIVRVPELSSKLTFPISLKQPGPRG 120

Query: 121 SLLQCYIKRNRSSQTYYLYLGLNQ-SSNDDGKFLLAARKCRRPTCTDYIISLNCDDVSKG 179
           SL+QCYI RNRS+QTYYLYLGLNQ +SNDDGKFLLAA++ RRPTCTDYIISLNCDDVS+G
Sbjct: 121 SLVQCYIMRNRSNQTYYLYLGLNQAASNDDGKFLLAAKRFRRPTCTDYIISLNCDDVSRG 180

Query: 180 SSTYIG--RSNFLGTKFTIYDGHPPNAEARVTKCRSTRQVNMKQVSPKLLAGNYHVAHIS 237
           S+TYIG  RSNFLGTKFT+YD  P N   +VT+ RS+R +++KQVSP++ +GNY VAHIS
Sbjct: 181 SNTYIGKLRSNFLGTKFTVYDAQPTNPGTQVTRTRSSRLLSLKQVSPRIPSGNYPVAHIS 240

Query: 238 YELNVLGSRGPRRMQCVMDAIPASSIEPGGVAPTQTEFHHSGLDSFPSIPFFRSKSIRAE 297
           YELNVLGSRGPRRMQCVMDAIPAS++EPGG APTQTE  HS LDSFPS  FFRSKSIRAE
Sbjct: 241 YELNVLGSRGPRRMQCVMDAIPASAVEPGGTAPTQTELVHSNLDSFPSFSFFRSKSIRAE 300

Query: 298 NFQND-----QKEGLLVLRNKAPRWHEQLQCWCLNFNGRVTVASVKNFQLVASLENGVAG 352
           +  +      QKEGLLVL+NKAPRWHEQLQCWCLNFNGRVTVASVKNFQLVA+ ENG AG
Sbjct: 301 SLPSGPSSAAQKEGLLVLKNKAPRWHEQLQCWCLNFNGRVTVASVKNFQLVAAPENGPAG 360

Query: 353 QEHENVILQFGKVGKDVFTMDYQYPISAFQAFAICLSSFDTKIACE 398
            EHENVILQFGKVGKDVFTMDYQYPISAFQAF ICLSSFDTKIACE
Sbjct: 361 PEHENVILQFGKVGKDVFTMDYQYPISAFQAFTICLSSFDTKIACE 406

Arabidopsis thaliana (taxid: 3702)
>sp|Q10LG8|TLP6_ORYSJ Tubby-like F-box protein 6 OS=Oryza sativa subsp. japonica GN=TULP6 PE=2 SV=1 Back     alignment and function description
>sp|Q8H485|TLP11_ORYSJ Tubby-like F-box protein 11 OS=Oryza sativa subsp. japonica GN=TULP11 PE=2 SV=1 Back     alignment and function description
>sp|Q2QXB2|TLP14_ORYSJ Tubby-like F-box protein 14 OS=Oryza sativa subsp. japonica GN=TULP14 PE=2 SV=1 Back     alignment and function description
>sp|Q75HX5|TLP8_ORYSJ Tubby-like F-box protein 8 OS=Oryza sativa subsp. japonica GN=TULP8 PE=2 SV=1 Back     alignment and function description
>sp|Q53PP5|TLP13_ORYSJ Tubby-like F-box protein 13 OS=Oryza sativa subsp. japonica GN=TULP13 PE=2 SV=1 Back     alignment and function description
>sp|Q9SQU1|TLP9_ARATH Tubby-like F-box protein 9 OS=Arabidopsis thaliana GN=TULP9 PE=1 SV=1 Back     alignment and function description
>sp|Q6NPQ1|TLP11_ARATH Tubby-like F-box protein 11 OS=Arabidopsis thaliana GN=TULP11 PE=2 SV=1 Back     alignment and function description
>sp|Q944S3|TLP5_ARATH Tubby-like F-box protein 5 OS=Arabidopsis thaliana GN=TULP5 PE=2 SV=1 Back     alignment and function description
>sp|Q69U54|TLP12_ORYSJ Tubby-like F-box protein 12 OS=Oryza sativa subsp. japonica GN=TULP12 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query398
225436797405 PREDICTED: tubby-like F-box protein 3-li 1.0 0.982 0.839 0.0
297828507407 hypothetical protein ARALYDRAFT_322431 [ 1.0 0.977 0.810 0.0
302399093401 TLP domain class transcription factor [M 0.992 0.985 0.811 0.0
334184979407 Tubby-like F-box protein 3 [Arabidopsis 1.0 0.977 0.810 0.0
30690823406 Tubby-like F-box protein 3 [Arabidopsis 1.0 0.980 0.812 0.0
388509992402 unknown [Lotus japonicus] 0.977 0.967 0.727 1e-171
255559330444 phosphoric diester hydrolase, putative [ 0.902 0.808 0.790 1e-168
356549056389 PREDICTED: tubby-like F-box protein 6-li 0.927 0.948 0.746 1e-167
357447461393 Tubby-like F-box protein [Medicago trunc 0.927 0.938 0.748 1e-166
356555565385 PREDICTED: tubby-like F-box protein 6-li 0.927 0.958 0.746 1e-165
>gi|225436797|ref|XP_002269323.1| PREDICTED: tubby-like F-box protein 3-like [Vitis vinifera] Back     alignment and taxonomy information
 Score =  707 bits (1824), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 340/405 (83%), Positives = 370/405 (91%), Gaps = 7/405 (1%)

Query: 1   MSFKSILQDVKGELGSISRKGFDVRFGYG-RSRSHRVVQDCSVVVDAFKQSCWANMPPEL 59
           MSFKSI+QD++GE GSISRKGF+V+F YG RSRSHRVVQD S+VVDA +QSCWANMPPEL
Sbjct: 1   MSFKSIIQDMRGEFGSISRKGFEVKFNYGLRSRSHRVVQDSSMVVDALRQSCWANMPPEL 60

Query: 60  LRDVLLRIEASETTWPPRKNVVACAGVCRSWREIMKEIVKTLEVSGKLTFPISLKQPGPR 119
           LRDVL+RIEASE+TWPPRKNVVACAGVCRSWREI KEIVKT E+SGKLTFPISLKQPGPR
Sbjct: 61  LRDVLMRIEASESTWPPRKNVVACAGVCRSWREITKEIVKTPELSGKLTFPISLKQPGPR 120

Query: 120 GSLLQCYIKRNRSSQTYYLYLGLNQSSNDDGKFLLAARKCRRPTCTDYIISLNCDDVSKG 179
           GSLLQCYIKRNRS+QTY+LYLGLNQ+S DDGKFLLAARKCRRPTCTDYIISLN DDVSKG
Sbjct: 121 GSLLQCYIKRNRSNQTYHLYLGLNQASTDDGKFLLAARKCRRPTCTDYIISLNADDVSKG 180

Query: 180 SSTYIG--RSNFLGTKFTIYDGHPPNAEARVTKCRSTRQVNMKQVSPKLLAGNYHVAHIS 237
           S+TYIG  RSNFLGTKFT+YD  PPNA AR++K RSTR++  +QVSP++ AGNY VAHIS
Sbjct: 181 STTYIGKLRSNFLGTKFTVYDAQPPNAGARISKSRSTRRLGSRQVSPRVPAGNYPVAHIS 240

Query: 238 YELNVLGSRGPRRMQCVMDAIPASSIEPGGVAPTQTEFHHSGLDSFPSIPFFRSKSIRAE 297
           YELNVLGSRGPRRMQCVMDAIPA++IEPGGVAPTQTEF  S +DSFPS PFFRSKS R E
Sbjct: 241 YELNVLGSRGPRRMQCVMDAIPANAIEPGGVAPTQTEFVLSNVDSFPSFPFFRSKSNRTE 300

Query: 298 NFQ----NDQKEGLLVLRNKAPRWHEQLQCWCLNFNGRVTVASVKNFQLVASLENGVAGQ 353
           +      +  K+ +LVL+NKAPRWHEQLQCWCLNFNGRVTVASVKNFQLVAS ENGVAGQ
Sbjct: 301 SLHSGPLSGPKDEMLVLKNKAPRWHEQLQCWCLNFNGRVTVASVKNFQLVASAENGVAGQ 360

Query: 354 EHENVILQFGKVGKDVFTMDYQYPISAFQAFAICLSSFDTKIACE 398
           EHENVILQFGKVGKDVFTMDYQYPISAFQAFAICLSSFDTKIACE
Sbjct: 361 EHENVILQFGKVGKDVFTMDYQYPISAFQAFAICLSSFDTKIACE 405

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|297828507|ref|XP_002882136.1| hypothetical protein ARALYDRAFT_322431 [Arabidopsis lyrata subsp. lyrata] gi|297327975|gb|EFH58395.1| hypothetical protein ARALYDRAFT_322431 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|302399093|gb|ADL36841.1| TLP domain class transcription factor [Malus x domestica] Back     alignment and taxonomy information
>gi|334184979|ref|NP_001189775.1| Tubby-like F-box protein 3 [Arabidopsis thaliana] gi|3738302|gb|AAC63644.1| putative tubby protein [Arabidopsis thaliana] gi|20197552|gb|AAM15124.1| putative tubby protein [Arabidopsis thaliana] gi|227204449|dbj|BAH57076.1| AT2G47900 [Arabidopsis thaliana] gi|330255815|gb|AEC10909.1| Tubby-like F-box protein 3 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|30690823|ref|NP_850481.1| Tubby-like F-box protein 3 [Arabidopsis thaliana] gi|79324947|ref|NP_001031558.1| Tubby-like F-box protein 3 [Arabidopsis thaliana] gi|75248467|sp|Q8VY21.1|TLP3_ARATH RecName: Full=Tubby-like F-box protein 3; Short=AtTLP3 gi|18377640|gb|AAL66970.1| putative tubby protein [Arabidopsis thaliana] gi|20465543|gb|AAM20254.1| putative tubby protein [Arabidopsis thaliana] gi|27372514|gb|AAK98802.1| tubby-like protein 3 [Arabidopsis thaliana] gi|330255813|gb|AEC10907.1| Tubby-like F-box protein 3 [Arabidopsis thaliana] gi|330255814|gb|AEC10908.1| Tubby-like F-box protein 3 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|388509992|gb|AFK43062.1| unknown [Lotus japonicus] Back     alignment and taxonomy information
>gi|255559330|ref|XP_002520685.1| phosphoric diester hydrolase, putative [Ricinus communis] gi|223540070|gb|EEF41647.1| phosphoric diester hydrolase, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|356549056|ref|XP_003542914.1| PREDICTED: tubby-like F-box protein 6-like [Glycine max] Back     alignment and taxonomy information
>gi|357447461|ref|XP_003594006.1| Tubby-like F-box protein [Medicago truncatula] gi|355483054|gb|AES64257.1| Tubby-like F-box protein [Medicago truncatula] Back     alignment and taxonomy information
>gi|356555565|ref|XP_003546101.1| PREDICTED: tubby-like F-box protein 6-like [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query398
TAIR|locus:2025327455 TLP1 "AT1G76900" [Arabidopsis 0.751 0.657 0.503 7.3e-113
TAIR|locus:2081101380 TLP9 "AT3G06380" [Arabidopsis 0.904 0.947 0.601 4.6e-112
TAIR|locus:2194686429 TLP5 "AT1G43640" [Arabidopsis 0.864 0.801 0.512 3.4e-111
TAIR|locus:2180034389 TLP11 "AT5G18680" [Arabidopsis 0.912 0.933 0.592 4.2e-111
TAIR|locus:2032950445 TLP10 "AT1G25280" [Arabidopsis 0.731 0.653 0.488 3e-110
TAIR|locus:2062121394 TLP2 "AT2G18280" [Arabidopsis 0.954 0.964 0.542 1.4e-105
TAIR|locus:2036730413 TLP6 "AT1G47270" [Arabidopsis 0.949 0.915 0.507 2.8e-98
TAIR|locus:2009610379 TLP7 "AT1G53320" [Arabidopsis 0.834 0.875 0.512 4.1e-88
UNIPROTKB|E1B8A6508 TUB "Uncharacterized protein" 0.233 0.183 0.52 9.1e-40
RGD|3918505 Tub "tubby homolog (mouse)" [R 0.233 0.184 0.52 1.8e-39
TAIR|locus:2025327 TLP1 "AT1G76900" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 760 (272.6 bits), Expect = 7.3e-113, Sum P(3) = 7.3e-113
 Identities = 160/318 (50%), Positives = 223/318 (70%)

Query:     1 MSFKSILQDVKGELGSISRKGFDVRFGY-----GRSRSHRVVQDC--SVVVDAFKQSCWA 53
             MSF+SI++DV+  +GS+SR+ FD +        G+SR    VQD     +V   +++ WA
Sbjct:     1 MSFRSIVRDVRDSIGSLSRRSFDFKLSSLNKEGGKSRGS--VQDSHEEQLVVTIQETPWA 58

Query:    54 NMPPELLRDVLLRIEASETTWPPRKNVVACAGVCRSWREIMKEIVKTLEVSGKLTFPISL 113
             N+PPELLRDV+ R+E SE+ WP R++VVACA VCRSWR++ KEIV++ E+SGK+TFP+SL
Sbjct:    59 NLPPELLRDVIKRLEESESVWPARRHVVACASVCRSWRDMCKEIVQSPELSGKITFPVSL 118

Query:   114 KQPGPRGSLLQCYIKRNRSSQTYYLYLGLNQSSN-DDGKFLLAARKCRRPTCTDYIISLN 172
             KQPGPR + +QC+IKR++S+ TY+LYL L+ +   ++GKFLL+A++ RR T T+Y+IS++
Sbjct:   119 KQPGPRDATMQCFIKRDKSNLTYHLYLCLSPALLVENGKFLLSAKRIRRTTYTEYVISMH 178

Query:   173 CDDVSKGSSTYIG--RSNFLGTKFTIYDGHPP---NAEARVTKCRSTRQVNMKQVSPKLL 227
              D +S+ S+TYIG  RSNFLGTKF IYD  P    N    V     +R+   K+VSPK+ 
Sbjct:   179 ADTISRSSNTYIGKIRSNFLGTKFIIYDTQPAYNSNIARAVQPVGLSRRFYSKRVSPKVP 238

Query:   228 AGNYHVAHISYELNVLGSRGPRRMQCVMDAIPASSIEPGGVAPTQTEF--HHSGLD-SFP 284
             +G+Y +A +SYELNVLG+RGPRRM C M++IPASS+  GG  P Q +     S LD SF 
Sbjct:   239 SGSYKIAQVSYELNVLGTRGPRRMHCAMNSIPASSLAEGGTVPGQPDIIVPRSILDESFR 298

Query:   285 SIPFFRSKSIRAENFQND 302
             SI    S+ I  + + ND
Sbjct:   299 SITSSSSRKITYD-YSND 315
GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS
GO:0005634 "nucleus" evidence=ISM
GO:0008081 "phosphoric diester hydrolase activity" evidence=ISS
GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA;TAS
GO:0043687 "post-translational protein modification" evidence=RCA
GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA
TAIR|locus:2081101 TLP9 "AT3G06380" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2194686 TLP5 "AT1G43640" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2180034 TLP11 "AT5G18680" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2032950 TLP10 "AT1G25280" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2062121 TLP2 "AT2G18280" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2036730 TLP6 "AT1G47270" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2009610 TLP7 "AT1G53320" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|E1B8A6 TUB "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
RGD|3918 Tub "tubby homolog (mouse)" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q8H485TLP11_ORYSJNo assigned EC number0.64540.99240.9729yesno
Q8VY21TLP3_ARATHNo assigned EC number0.81281.00.9802yesno
Q10LG8TLP6_ORYSJNo assigned EC number0.67991.00.9875yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query398
pfam01167243 pfam01167, Tub, Tub family 1e-113
>gnl|CDD|216339 pfam01167, Tub, Tub family Back     alignment and domain information 
 Score =  329 bits (845), Expect = e-113
 Identities = 127/282 (45%), Positives = 165/282 (58%), Gaps = 44/282 (15%)

Query: 116 PGPRGSLLQCYIKRNRSSQTYYLYLGLN---QSSNDDGKFLLAARKCRRPTCTDYIISLN 172
           P PRG  +QC I R++S   Y L+       +  N   KFLLAARK +R   ++Y+ISL+
Sbjct: 1   PAPRGGTVQCRITRDKSGMDYGLFPTYYLHLERENGKKKFLLAARKRKRSKTSNYLISLD 60

Query: 173 CDDVSKGSSTYIG--RSNFLGTKFTIYDGHPPNAEARVTKCRSTRQVNMKQVSPKLLAGN 230
             D+S+    YIG  RSNFLGTKFT++D      +AR+             V+PK+ +G 
Sbjct: 61  PTDLSRSGDGYIGKLRSNFLGTKFTVFDNGVNPQKARL-------------VTPKVASGR 107

Query: 231 YHVAHISYELNVLGSRGPRRMQCVMDAIPASSIEPGGVAPTQTEFHHSGLDSFPSIPFFR 290
             +A + YE NVLG RGPR+M  +M  IP+S        P Q       L S        
Sbjct: 108 QELAAVCYETNVLGFRGPRKMTVIMPGIPSSHE----RVPIQPLNDQESLLS-------- 155

Query: 291 SKSIRAENFQNDQKEGLLVLRNKAPRWHEQLQCWCLNFNGRVTVASVKNFQLVASLENGV 350
                   +QN  KE LLVL NKAPRW++QLQ + LNF+GRVT ASVKNFQ+       V
Sbjct: 156 -------RWQNKNKESLLVLHNKAPRWNDQLQSYVLNFHGRVTQASVKNFQI-------V 201

Query: 351 AGQEHENVILQFGKVGKDVFTMDYQYPISAFQAFAICLSSFD 392
              + + ++LQFG+V KD+FTMDY+YP+SAFQAFAICLSSFD
Sbjct: 202 HASDPDYIVLQFGRVAKDMFTMDYRYPLSAFQAFAICLSSFD 243

Length = 243

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 398
KOG2502355 consensus Tub family proteins [General function pr 100.0
PF01167246 Tub: Tub family; InterPro: IPR000007 Tubby, an aut 100.0
KOG2503565 consensus Tubby superfamily protein TULP4 [General 99.76
PF1293747 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 97.8
PF0064648 F-box: F-box domain; InterPro: IPR001810 The F-box 97.62
PLN03215373 ascorbic acid mannose pathway regulator 1; Provisi 97.22
smart0025641 FBOX A Receptor for Ubiquitination Targets. 97.19
PF12043346 DUF3527: Domain of unknown function (DUF3527); Int 96.77
KOG2997366 consensus F-box protein FBX9 [General function pre 89.52
>KOG2502 consensus Tub family proteins [General function prediction only] Back     alignment and domain information 
Probab=100.00  E-value=6e-127  Score=940.97  Aligned_cols=351  Identities=58%  Similarity=0.940  Sum_probs=307.1

Q ss_pred             CchhhhhhhhccccCcceecceeeeecccCCcccceecccccccccccCCccCCCChHHHHHHHHhhhhcCCCCCCccce
Q 015934            1 MSFKSILQDVKGELGSISRKGFDVRFGYGRSRSHRVVQDCSVVVDAFKQSCWANMPPELLRDVLLRIEASETTWPPRKNV   80 (398)
Q Consensus         1 m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~ell~~~~~r~e~~~~~wp~r~~v   80 (398)
                      |+++++++++++..      +++..........+..+++.. .+.....+.|++||||||+|+|+|+|++|+.||+|++|
T Consensus         1 ~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~-~~s~~~~~~~~~l~~~~L~d~~~r~eese~~wp~r~~v   73 (355)
T KOG2502|consen    1 MGEDGPVRDPEDKS------SFRAPQGSGTKGPEDKSEDSG-FPSPSDQSLWAALPPELLSDVLKRDEESEDTWPSRRNV   73 (355)
T ss_pred             CCccCccCCCCccc------chhcccccccccCCCccCCcC-CccccccchhhcCCHhHHHHHhhhcccccccccccccc
Confidence            78999999998876      444444322111233333331 11111228999999999999999999999999999999


Q ss_pred             eeecccchhHHHHHHHHhhccccccceeccccccCCCCCCceEEEEEEEeccCCeEEEEeccccCCC--CCCcEEEEEEe
Q 015934           81 VACAGVCRSWREIMKEIVKTLEVSGKLTFPISLKQPGPRGSLLQCYIKRNRSSQTYYLYLGLNQSSN--DDGKFLLAARK  158 (398)
Q Consensus        81 v~ca~vc~~wr~~~~eiv~~pe~~g~~tFpisLkqPgPrd~~iQC~IkR~k~~~tY~LyL~l~~~~~--~~gkfLLaArK  158 (398)
                      |+||+||+.||++++|||++|+.+|++|||++|+||||+|.++||+|+|||+|++|+||++|.+++.  |++||||||||
T Consensus        74 vs~~~~~~~~r~~~~~~v~~~~~~~k~~~~~~l~qP~P~~~~~qC~I~Rdks~~~~~Ly~~l~~~l~~~d~~kfLLaark  153 (355)
T KOG2502|consen   74 VSCAGVCDKWREISKEIVAPPEPSSKLTFPASLKQPGPRGVLVQCYIKRDKSGMDRGLYLSLYLHLEREDNKKFLLAARK  153 (355)
T ss_pred             ccccchhhhhhhhccccccCCccccccchhHHhcCCCCCCceEEEEEEEccCCCceeeeecccccccccccceeeeeeee
Confidence            9999999999999999999999999999999999999999999999999999999999999998753  77999999999


Q ss_pred             cCCCCcceEEEEccCCCCCCCCCceee--eecccccEEEEEcCCCCCCccccccccccccccccccCccccCCceeEEEE
Q 015934          159 CRRPTCTDYIISLNCDDVSKGSSTYIG--RSNFLGTKFTIYDGHPPNAEARVTKCRSTRQVNMKQVSPKLLAGNYHVAHI  236 (398)
Q Consensus       159 rrr~~tSnYiISld~~dlSr~S~~yVG--RSNflGTkFtIYD~g~p~~~a~~~~~rs~r~~~~kqvsp~vp~g~~ela~V  236 (398)
                      +||+||+|||||+|++||||++++|||  |||||||||||||+|.++.          |.++      ++|+++|+||+|
T Consensus       154 ~rr~~~t~yiiS~d~~~lSr~~~~yvGklRSN~lGTKFtVyD~g~~~~----------r~~~------~~~~~~~~la~V  217 (355)
T KOG2502|consen  154 RRRSKTTNYLISLDPTDLSRGSESYVGKLRSNLLGTKFTVYDNGVNPS----------RRFN------KVPSGRQELAAV  217 (355)
T ss_pred             ecccccceeEEeccccccccCccceeeeeecccccceEEEecCCCCcc----------cccc------cCCcccceeeEE
Confidence            999999999999999999999999999  9999999999999976542          3333      689999999999


Q ss_pred             EEeecccCCCCCceeeEeeccCCCcccCCCCCCCCccccccCCCCCCCCcccccccchhhcccccccccceEEEeeCCCc
Q 015934          237 SYELNVLGSRGPRRMQCVMDAIPASSIEPGGVAPTQTEFHHSGLDSFPSIPFFRSKSIRAENFQNDQKEGLLVLRNKAPR  316 (398)
Q Consensus       237 ~Ye~NVLg~rGPRrM~~im~~IP~~~i~~gg~~p~q~~~~~~~~e~~~~~~~~k~k~~~~~~~~~~~~~~~~vL~nK~P~  316 (398)
                      +||+||||+||||||+|+||+||.++  |+|++|.|++..+..     .+  ++        +.+..++++++|+||+|+
T Consensus       218 ~Ye~NVLg~rGPRrM~~im~~i~~s~--~~~~v~~q~~~~~~~-----~l--~r--------~~~k~~e~~lvL~NK~P~  280 (355)
T KOG2502|consen  218 IYETNVLGFRGPRRMTVIMPGISPSA--PGGRVPVQPENDHPS-----LL--FR--------SQNKDKEGLLVLKNKTPR  280 (355)
T ss_pred             EEeeccccccCCceeEEeccCCCCCC--CCCcccccccccccc-----hh--hh--------ccccCcccceEeecCCCc
Confidence            99999999999999999999999987  899999987654421     01  11        113346899999999999


Q ss_pred             ccccccceEeccCCceeccccceeEEEecccCCcCCCCCCeEEEEeeeecCCeEEEEccCCCCHHHHHHHHHHhCccccc
Q 015934          317 WHEQLQCWCLNFNGRVTVASVKNFQLVASLENGVAGQEHENVILQFGKVGKDVFTMDYQYPISAFQAFAICLSSFDTKIA  396 (398)
Q Consensus       317 w~e~lq~~~LnF~GRVt~aSVKNFQLv~~~~~~~~~~~~~~iiLQFGKv~kd~F~mD~~yPlS~~QAFaI~LssfDtKlA  396 (398)
                      |||++||||||||||||+||||||||||..       ++++|||||||||||+|||||+|||||||||||||||||||||
T Consensus       281 wne~~q~~~LNF~GRVT~ASVKNFQLv~~~-------~p~~iiLQFGrV~kD~FTmDYrYPlSa~QAFaIcLSSFdtKla  353 (355)
T KOG2502|consen  281 WNEETQSYCLNFHGRVTQASVKNFQLVHAL-------DPEYIILQFGRVGKDVFTMDYRYPLSAFQAFAICLSSFDTKLA  353 (355)
T ss_pred             cccccceEEEecCCeEEEeeecceEEeccC-------CCCEEEEEeeeeccceeeecccCccHHHHHHHHHHHhcccccc
Confidence            999999999999999999999999999985       5699999999999999999999999999999999999999999


Q ss_pred             cC
Q 015934          397 CE  398 (398)
Q Consensus       397 CE  398 (398)
                      ||
T Consensus       354 Ce  355 (355)
T KOG2502|consen  354 CE  355 (355)
T ss_pred             CC
Confidence            98

>PF01167 Tub: Tub family; InterPro: IPR000007 Tubby, an autosomal recessive mutation, mapping to mouse chromosome 7, was recently found to be the result of a splicing defect in a novel gene with unknown function Back     alignment and domain information
>KOG2503 consensus Tubby superfamily protein TULP4 [General function prediction only] Back     alignment and domain information
>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B Back     alignment and domain information
>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ] Back     alignment and domain information
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional Back     alignment and domain information
>smart00256 FBOX A Receptor for Ubiquitination Targets Back     alignment and domain information
>PF12043 DUF3527: Domain of unknown function (DUF3527); InterPro: IPR021916 This presumed domain is functionally uncharacterised Back     alignment and domain information
>KOG2997 consensus F-box protein FBX9 [General function prediction only] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query398
1s31_A273 Crystal Structure Analysis Of The Human Tub Protein 3e-47
1c8z_A265 C-Terminal Domain Of Mouse Brain Tubby Protein Leng 9e-47
1i7e_A265 C-Terminal Domain Of Mouse Brain Tubby Protein Boun 2e-46
2fim_A276 Structure Of The C-Terminal Domain Of Human Tubby-L 4e-42
3c5n_A246 Structure Of Human Tulp1 In Complex With Ip3 Length 3e-39
>pdb|1S31|A Chain A, Crystal Structure Analysis Of The Human Tub Protein (isoform A) Spanning Residues 289 Through 561 Length = 273 Back     alignment and structure 
Iteration: 1

 Score =  185 bits (470), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 109/296 (36%), Positives = 164/296 (55%), Gaps = 58/296 (19%)
Query: 115 QPGPRGSLLQCYIKRNRSSQ------TYYLYLGLNQSSNDDGK--FLLAARKCRRPTCTD 166
           +P P+G  ++C I R++         TY+L+L       +DGK  FLLA RK ++   ++
Sbjct: 24  RPAPQGITIKCRITRDKKGMDRGMFPTYFLHL-----DREDGKKVFLLAGRKRKKSKTSN 78
Query: 167 YIISLNCDDVSKGSSTYIG--RSNFLGTKFTIYDG--HPPNAEARVTKCRSTRQVNMKQV 222
           Y+IS++  D+S+G  +YIG  RSN +GTKFT+YD   +P  A +   +  + RQ      
Sbjct: 79  YLISVDPTDLSRGGDSYIGKLRSNLMGTKFTVYDNGVNPQKASSSTLESGTLRQ------ 132
Query: 223 SPKLLAGNYHVAHISYELNVLGSRGPRRMQCVMDAIPASSIEPGGVAPTQTEFHHSGLDS 282
                     +A + YE NVLG +GPR+M  +   +P  ++    V+      H + L  
Sbjct: 133 ---------ELAAVCYETNVLGFKGPRKMSVI---VPGMNMVHERVSIRPRNEHETLL-- 178
Query: 283 FPSIPFFRSKSIRAENFQNDQKEGLLVLRNKAPRWHEQLQCWCLNFNGRVTVASVKNFQL 342
                           +QN   E ++ L+NK P W++  Q + LNF+GRVT ASVKNFQ+
Sbjct: 179 --------------ARWQNKNTESIIELQNKTPVWNDDTQSYVLNFHGRVTQASVKNFQI 224
Query: 343 VASLENGVAGQEHENVILQFGKVGKDVFTMDYQYPISAFQAFAICLSSFDTKIACE 398
           +        G + + +++QFG+V +DVFTMDY YP+ A QAFAI LSSFD+K+ACE
Sbjct: 225 IH-------GNDPDYIVMQFGRVAEDVFTMDYNYPLCALQAFAIALSSFDSKLACE 273
>pdb|1C8Z|A Chain A, C-Terminal Domain Of Mouse Brain Tubby Protein Length = 265 Back     alignment and structure
>pdb|1I7E|A Chain A, C-Terminal Domain Of Mouse Brain Tubby Protein Bound To Phosphatidylinositol 4,5-Bis-Phosphate Length = 265 Back     alignment and structure
>pdb|2FIM|A Chain A, Structure Of The C-Terminal Domain Of Human Tubby-Like Protein 1 Length = 276 Back     alignment and structure
>pdb|3C5N|A Chain A, Structure Of Human Tulp1 In Complex With Ip3 Length = 246 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query398
2fim_A276 Tubby related protein 1; tubby filled-barrel, beta 6e-92
3c5n_A246 Tubby-related protein 1; inositol, signalling, alt 3e-89
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-07
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-05
>2fim_A Tubby related protein 1; tubby filled-barrel, beta-barrel, filled-beta-roll, 12-stran barrel, helix-filled-barrel, retinitis pigmentosa; HET: 3DP; 1.90A {Homo sapiens} PDB: 1s31_A* Length = 276 Back     alignment and structure
 Score =  277 bits (708), Expect = 6e-92
 Identities = 99/289 (34%), Positives = 146/289 (50%), Gaps = 44/289 (15%)

Query: 113 LKQPGPRGSLLQCYIKRNRSSQTYYLYLGLNQSSNDDGK-FLLAARKCRRPTCTDYIISL 171
           + +P P+G  ++C + R++      +Y       + + K FLLA RK +R    +Y+IS+
Sbjct: 29  VLRPAPQGRTVRCRLTRDKKGMDRGMYPSYFLHLDTEKKVFLLAGRKRKRSKTANYLISI 88

Query: 172 NCDDVSKGSSTYIG--RSNFLGTKFTIYDGHPPNAEARVTKCRSTRQVNMKQVSPKLLAG 229
           +  ++S+G   +IG  RSN LG +FT++D                     +  S  + + 
Sbjct: 89  DPTNLSRGGENFIGKLRSNLLGNRFTVFDNGQNP---------------QRGYSTNVASL 133

Query: 230 NYHVAHISYELNVLGSRGPRRMQCVMDAIPASSIEPGGVAPTQTEFHHSGLDSFPSIPFF 289
              +A + YE NVLG RGPRRM  ++   P  S E   V           L         
Sbjct: 134 RQELAAVIYETNVLGFRGPRRMTVII---PGMSAENERVPIRPRNASDGLL--------- 181

Query: 290 RSKSIRAENFQNDQKEGLLVLRNKAPRWHEQLQCWCLNFNGRVTVASVKNFQLVASLENG 349
                    +QN   E L+ L NK P W++    + LNF GRVT ASVKNFQ+V +    
Sbjct: 182 -------VRWQNKTLESLIELHNKPPVWNDDSGSYTLNFQGRVTQASVKNFQIVHA---- 230

Query: 350 VAGQEHENVILQFGKVGKDVFTMDYQYPISAFQAFAICLSSFDTKIACE 398
               + + ++LQFG+V +D FT+DY+YP+ A QAFAI LSSFD K+ACE
Sbjct: 231 ---DDPDYIVLQFGRVAEDAFTLDYRYPLCALQAFAIALSSFDGKLACE 276
>3c5n_A Tubby-related protein 1; inositol, signalling, alternative splicing, disease mutation, polymorphism, retinitis pigmentosa, sensory transduction; HET: I3P; 1.80A {Homo sapiens} PDB: 1i7e_A* 1c8z_A Length = 246 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query398
2fim_A276 Tubby related protein 1; tubby filled-barrel, beta 100.0
3c5n_A246 Tubby-related protein 1; inositol, signalling, alt 100.0
1fs1_A53 SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, L 98.1
2ast_B336 S-phase kinase-associated protein 2; SCF-substrate 96.93
2e31_A297 FBS1, F-box only protein 2; ubiquitin, SCF, ubiqui 96.77
2p1m_B 594 Transport inhibitor response 1 protein; F-BOX, leu 96.56
2ovr_B445 FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 94.53
3v7d_B 464 Cell division control protein 4; WD 40 domain, pho 94.44
3l2o_B312 F-box only protein 4; small G protein fold, UBL co 92.92
1p22_A435 F-BOX/WD-repeat protein 1A; ubiquitination, degrad 92.4
3ogk_B 592 Coronatine-insensitive protein 1; leucine rich rep 92.02
>2fim_A Tubby related protein 1; tubby filled-barrel, beta-barrel, filled-beta-roll, 12-stran barrel, helix-filled-barrel, retinitis pigmentosa; HET: 3DP; 1.90A {Homo sapiens} PDB: 1s31_A* Back     alignment and structure
Probab=100.00  E-value=3e-88  Score=656.37  Aligned_cols=244  Identities=41%  Similarity=0.750  Sum_probs=187.2

Q ss_pred             cceeccccccCCCCCCceEEEEEEEeccC------CeEEEEeccccCCCCCCcEEEEEEecCCCCcceEEEEccCCCCCC
Q 015934          105 GKLTFPISLKQPGPRGSLLQCYIKRNRSS------QTYYLYLGLNQSSNDDGKFLLAARKCRRPTCTDYIISLNCDDVSK  178 (398)
Q Consensus       105 g~~tFpisLkqPgPrd~~iQC~IkR~k~~------~tY~LyL~l~~~~~~~gkfLLaArKrrr~~tSnYiISld~~dlSr  178 (398)
                      ....|   |+||+|+|++|||+|+|||+|      ++|||||+     .++++|||||||+|+++|+||+||+|++||+|
T Consensus        24 ~~~~f---l~~P~P~~~~iqC~I~R~k~g~~~g~yp~y~L~l~-----~~~~~fLLaarK~k~~~ts~YiIS~d~~dlsr   95 (276)
T 2fim_A           24 EPREF---VLRPAPQGRTVRCRLTRDKKGMDRGMYPSYFLHLD-----TEKKVFLLAGRKRKRSKTANYLISIDPTNLSR   95 (276)
T ss_dssp             -CTTG---GGSCCCTTCCEEEEEEEEC-------CCEEEEEEC-----SSSCEEEEEEEECTTCSSCEEEEESCTTC---
T ss_pred             HHHHH---hcCCCCCCCeEEEEEEEeCCCCCCCCceEEEEEEe-----CCCCEEEEEEEeccCCCCceEEEEecchhccc
Confidence            44567   999999999999999999998      59999994     46789999999999999999999999999999


Q ss_pred             CCCceee--eecccccEEEEEcCCCCCCccccccccccccccccccCccccCCceeEEEEEEeecccCCCCCceeeEeec
Q 015934          179 GSSTYIG--RSNFLGTKFTIYDGHPPNAEARVTKCRSTRQVNMKQVSPKLLAGNYHVAHISYELNVLGSRGPRRMQCVMD  256 (398)
Q Consensus       179 ~S~~yVG--RSNflGTkFtIYD~g~p~~~a~~~~~rs~r~~~~kqvsp~vp~g~~ela~V~Ye~NVLg~rGPRrM~~im~  256 (398)
                      ++++|||  ||||+||+|+|||+|.+++.+               .+|.++.+++|||+|+||+||||++|||+|+|+||
T Consensus        96 ~s~~yvGKLrSNflGtkF~iyD~G~~p~~~---------------~s~~~~~~r~el~~V~Ye~nvlg~~gPR~m~v~iP  160 (276)
T 2fim_A           96 GGENFIGKLRSNLLGNRFTVFDNGQNPQRG---------------YSTNVASLRQELAAVIYETNVLGFRGPRRMTVIIP  160 (276)
T ss_dssp             ---CEEEEEEECSSSSEEEEECSSBCGGGC---------------TTSCGGGBCCEEEEEEEC---------CCEEEEEE
T ss_pred             CCceEEEEEEEccCCCEEEEECCCCCcccc---------------cCcccccccEEEEEEEEEecccCCCCCeEEEEEec
Confidence            9999999  999999999999999876532               24667788999999999999999999999999986


Q ss_pred             cCCCcccCCCCCCCCccccccCC-CCCCCCcccccccchhhcccccccccceEEEeeCCCcccccccceEeccCCceecc
Q 015934          257 AIPASSIEPGGVAPTQTEFHHSG-LDSFPSIPFFRSKSIRAENFQNDQKEGLLVLRNKAPRWHEQLQCWCLNFNGRVTVA  335 (398)
Q Consensus       257 ~IP~~~i~~gg~~p~q~~~~~~~-~e~~~~~~~~k~k~~~~~~~~~~~~~~~~vL~nK~P~w~e~lq~~~LnF~GRVt~a  335 (398)
                      .+   . +.|+..|.+    +.+ .+++  +..+          .+.+.+++++|+||+|+|||++|||||||+||||+|
T Consensus       161 ~~---~-~~~~~~~~~----p~~~~~~l--l~~~----------~~~~~~~~~~l~nK~P~wne~~~~y~LnF~GRVt~a  220 (276)
T 2fim_A          161 GM---S-AENERVPIR----PRNASDGL--LVRW----------QNKTLESLIELHNKPPVWNDDSGSYTLNFQGRVTQA  220 (276)
T ss_dssp             CB---C-TTSCBCCCC----CSSTTCSH--HHHH----------HHTCCTTEEEEEECCCEEETTTTEEECCCTTCCCSC
T ss_pred             Cc---c-cCCCEeccc----CCCccccc--chhh----------hccCCcceEeeeccCCcccccCCEEEEecCCeeecc
Confidence            53   2 234433332    211 1221  1011          123557899999999999999999999999999999


Q ss_pred             ccceeEEEecccCCcCCCCCCeEEEEeeeecCCeEEEEccCCCCHHHHHHHHHHhCccccccC
Q 015934          336 SVKNFQLVASLENGVAGQEHENVILQFGKVGKDVFTMDYQYPISAFQAFAICLSSFDTKIACE  398 (398)
Q Consensus       336 SVKNFQLv~~~~~~~~~~~~~~iiLQFGKv~kd~F~mD~~yPlS~~QAFaI~LssfDtKlACE  398 (398)
                      ||||||||+++       ++++||||||||++|+|||||+|||||||||||||||||+|||||
T Consensus       221 SvKNFQLv~~~-------d~~~ivlQFGKv~~d~FtmD~~yPlS~~QAFaI~LsSfd~Klace  276 (276)
T 2fim_A          221 SVKNFQIVHAD-------DPDYIVLQFGRVAEDAFTLDYRYPLCALQAFAIALSSFDGKLACE  276 (276)
T ss_dssp             CTTCEEEECTT-------CTTSCSEEEEEEETTEEEEEECTTCCHHHHHHHHHHTCC------
T ss_pred             ccceEEEEecC-------CCCEEEEEEeecCCCeEEEEecCCCCHHHHHHHHHHhcccccccC
Confidence            99999999974       578999999999999999999999999999999999999999998
>3c5n_A Tubby-related protein 1; inositol, signalling, alternative splicing, disease mutation, polymorphism, retinitis pigmentosa, sensory transduction; HET: I3P; 1.80A {Homo sapiens} PDB: 1i7e_A* 1c8z_A Back     alignment and structure
>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E Back     alignment and structure
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Back     alignment and structure
>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A Back     alignment and structure
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Back     alignment and structure
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* Back     alignment and structure
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* Back     alignment and structure
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens} Back     alignment and structure
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 Back     alignment and structure
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 398
d1c8za_265 d.23.1.1 (A:) Transcriptional factor tubby, C-term 3e-98
d1fs1a141 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [ 8e-04
>d1c8za_ d.23.1.1 (A:) Transcriptional factor tubby, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 265 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: Tubby C-terminal domain-like
superfamily: Tubby C-terminal domain-like
family: Transcriptional factor tubby, C-terminal domain
domain: Transcriptional factor tubby, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  291 bits (746), Expect = 3e-98
 Identities = 97/291 (33%), Positives = 147/291 (50%), Gaps = 44/291 (15%)

Query: 113 LKQPGPRGSLLQCYIKRNRSSQT---YYLYLGLNQSSNDDGKFLLAARKCRRPTCTDYII 169
             +P P+G  ++C I R++       +  Y       +    FLLA RK ++   ++Y+I
Sbjct: 14  ALRPAPQGITIKCRITRDKKGMDRGMFPTYFLHLDREDGKKVFLLAGRKRKKSKTSNYLI 73

Query: 170 SLNCDDVSKGSSTYIG--RSNFLGTKFTIYDGHPPNAEARVTKCRSTRQVNMKQVSPKLL 227
           S++  D+S+G  +YIG  RSN +GTKFT+YD      +A  +   S              
Sbjct: 74  SVDPTDLSRGGDSYIGKLRSNLMGTKFTVYDNGVNPQKASSSTLESGT------------ 121

Query: 228 AGNYHVAHISYELNVLGSRGPRRMQCVMDAIPASSIEPGGVAPTQTEFHHSGLDSFPSIP 287
                +A + YE NVLG +GPR+M  ++  +             + E             
Sbjct: 122 -LRQELAAVCYETNVLGFKGPRKMSVIVPGMNMVHERVCIRPRNEHET------------ 168

Query: 288 FFRSKSIRAENFQNDQKEGLLVLRNKAPRWHEQLQCWCLNFNGRVTVASVKNFQLVASLE 347
                      +QN   E ++ L+NK P W++  Q + LNF+GRVT ASVKNFQ++    
Sbjct: 169 -------LLARWQNKNTESIIELQNKTPVWNDDTQSYVLNFHGRVTQASVKNFQIIHG-- 219

Query: 348 NGVAGQEHENVILQFGKVGKDVFTMDYQYPISAFQAFAICLSSFDTKIACE 398
                 + + +++QFG+V +DVFTMDY YP+ A QAFAI LSSFD+K+ACE
Sbjct: 220 -----NDPDYIVMQFGRVAEDVFTMDYNYPLCALQAFAIALSSFDSKLACE 265
>d1fs1a1 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 41 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query398
d1c8za_265 Transcriptional factor tubby, C-terminal domain {M 100.0
d1fs1a141 Skp2 {Human (Homo sapiens) [TaxId: 9606]} 98.01
d2ovrb1102 F-box/WD repeat-containing protein 7, FBXW7 {Human 97.04
d1nexb1100 Cdc4 F-box and linker domains {Baker's yeast (Sacc 96.84
d1p22a1118 F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom 95.09
>d1c8za_ d.23.1.1 (A:) Transcriptional factor tubby, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Tubby C-terminal domain-like
superfamily: Tubby C-terminal domain-like
family: Transcriptional factor tubby, C-terminal domain
domain: Transcriptional factor tubby, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=2.5e-83  Score=616.54  Aligned_cols=250  Identities=40%  Similarity=0.709  Sum_probs=207.9

Q ss_pred             ccceeccccccCCCCCCceEEEEEEEeccCC------eEEEEeccccCCCCCCcEEEEEEecCCCCcceEEEEccCCCCC
Q 015934          104 SGKLTFPISLKQPGPRGSLLQCYIKRNRSSQ------TYYLYLGLNQSSNDDGKFLLAARKCRRPTCTDYIISLNCDDVS  177 (398)
Q Consensus       104 ~g~~tFpisLkqPgPrd~~iQC~IkR~k~~~------tY~LyL~l~~~~~~~gkfLLaArKrrr~~tSnYiISld~~dlS  177 (398)
                      .....|   |.||||+|++|||+|+|||+|+      +|+|||+.   ..++++|||||||+|+++++|||||+|++|+|
T Consensus         8 ~~~~~F---l~qP~Pr~~~iqC~IkR~k~~~~~~l~~~Y~l~l~~---~~gk~kfLLaArK~r~~~~~~yiIS~~~~d~s   81 (265)
T d1c8za_           8 QDLEEF---ALRPAPQGITIKCRITRDKKGMDRGMFPTYFLHLDR---EDGKKVFLLAGRKRKKSKTSNYLISVDPTDLS   81 (265)
T ss_dssp             CSHHHH---HHCCCCTTCCEEEEEEECSSCSSSSCCCEEEEEEEC---TTSCEEEEEEEEEEESSSSEEEEEESCHHHHT
T ss_pred             hhHHHH---hcCCCCCCCcEEEEEEEccCCCcCccceeEEEEEcc---CCCceeEEEEEeeecCCCcceEEEEccHHHhc
Confidence            445567   9999999999999999999875      57888753   23455799999999999999999999999999


Q ss_pred             CCCCceee--eecccccEEEEEcCCCCCCccccccccccccccccccCccccCCceeEEEEEEeecccCCCCCceeeEee
Q 015934          178 KGSSTYIG--RSNFLGTKFTIYDGHPPNAEARVTKCRSTRQVNMKQVSPKLLAGNYHVAHISYELNVLGSRGPRRMQCVM  255 (398)
Q Consensus       178 r~S~~yVG--RSNflGTkFtIYD~g~p~~~a~~~~~rs~r~~~~kqvsp~vp~g~~ela~V~Ye~NVLg~rGPRrM~~im  255 (398)
                      |+|++|||  ||||+||+|+|||+|.+++++...             ++...+.++|||+|+||+|+||++|||+|+|+|
T Consensus        82 r~s~~yvGKlrSNflGTkF~iYD~G~~p~~~~~~-------------~~~~~~~r~ela~V~Ye~n~l~~rGPR~m~~~i  148 (265)
T d1c8za_          82 RGGDSYIGKLRSNLMGTKFTVYDNGVNPQKASSS-------------TLESGTLRQELAAVCYETNVLGFKGPRKMSVIV  148 (265)
T ss_dssp             TTCCCCSEEEEECTTSSEEEEECSSBCGGGCCTT-------------GGGSSSBCCEEEEEEECCCCSSCCSCCCEEEEE
T ss_pred             ccccceeEEeeccccCCEEEEecCCCCccccccc-------------ccccCccceeeeEEEEeeehhccCCCceeEEEe
Confidence            99999999  999999999999999888765422             112234578999999999999999999999999


Q ss_pred             ccCCCcccCCCCCCCCccccccCCCCCCCCcccccccchhhcccccccccceEEEeeCCCcccccccceEeccCCceecc
Q 015934          256 DAIPASSIEPGGVAPTQTEFHHSGLDSFPSIPFFRSKSIRAENFQNDQKEGLLVLRNKAPRWHEQLQCWCLNFNGRVTVA  335 (398)
Q Consensus       256 ~~IP~~~i~~gg~~p~q~~~~~~~~e~~~~~~~~k~k~~~~~~~~~~~~~~~~vL~nK~P~w~e~lq~~~LnF~GRVt~a  335 (398)
                      |.++.....      .  .+.+..+ .-..+          ..+.+...+++++|+||+|+||++++||+|||+||||+|
T Consensus       149 p~~~~~~~~------~--~~~p~~~-~~~~~----------~~~~~~~~~~~~~l~~k~P~~n~~~~~~~LnF~gRv~~~  209 (265)
T d1c8za_         149 PGMNMVHER------V--CIRPRNE-HETLL----------ARWQNKNTESIIELQNKTPVWNDDTQSYVLNFHGRVTQA  209 (265)
T ss_dssp             ECBCTTSCB------C--CCCCSST-TSSHH----------HHHHTTCCSSEEEEEECCCEEETTTTEEEEEETTEEEEC
T ss_pred             cCCCccccc------c--ccCCCCc-chhhh----------HHhhccCcccceEEecCCCeeeccCCEEEeccCCEEecc
Confidence            887643211      0  1111111 00001          111234568899999999999999999999999999999


Q ss_pred             ccceeEEEecccCCcCCCCCCeEEEEeeeecCCeEEEEccCCCCHHHHHHHHHHhCccccccC
Q 015934          336 SVKNFQLVASLENGVAGQEHENVILQFGKVGKDVFTMDYQYPISAFQAFAICLSSFDTKIACE  398 (398)
Q Consensus       336 SVKNFQLv~~~~~~~~~~~~~~iiLQFGKv~kd~F~mD~~yPlS~~QAFaI~LssfDtKlACE  398 (398)
                      ||||||||++.       +++++|||||||++|+|+|||+|||||+|||||||||||+|||||
T Consensus       210 SvKNFql~~~~-------~~~~~~lqfgKv~~~~f~~d~~~Pls~~qaF~i~lssf~~Klace  265 (265)
T d1c8za_         210 SVKNFQIIHGN-------DPDYIVMQFGRVAEDVFTMDYNYPLCALQAFAIALSSFDSKLACE  265 (265)
T ss_dssp             BTTEEEEECTT-------CTTSCSEEEEEEETTEEEEEECTTCCHHHHHHHHHHHHHSSCCCC
T ss_pred             ccceEEEEeCC-------CCCEEEEEEEEccCCeEEEEecCCCCHHHHHHHHHHHhccccccC
Confidence            99999999864       678899999999999999999999999999999999999999998
>d1fs1a1 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2ovrb1 a.158.1.1 (B:2263-2364) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1nexb1 a.158.1.1 (B:270-369) Cdc4 F-box and linker domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1p22a1 a.158.1.1 (A:135-252) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure