Citrus Sinensis ID: 015951

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------
Protein Sequence
MNTRRNRIASRALWLLVLLMITMAIGRAERVNNSSSAGLFWSTAKEDEDQPRKAERNDDSTAAAIVNDHDELDGGFSSIDGMLQWAIAKLKETAQDVQRLSPSELKKRQMEIKELMEKLKTPSDAQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLRTTEALVLKDFCGLDTALERLRQQLQEVMLEEDQRDYAMDVEALRREVELIFFRKLDDSGSNMIR
Secondary Structure (PSIPRED)
ccHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccHHHccccccccccccccccccccccccHHHHHHHHHHHcccccHHcccccHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHcccccccHHHHcccHHHHHHHcccccHHHHHHHHHHHHHHHHccHHHHHHHHHHccHHHHHHHHccccHHHHHHHHHHHHHHHHccHHHHHHHHHcccHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHccHHHHHHHHccccHHHHHHHHHHHHHHHccccHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccc
Secondary Structure Prediction (SSPRO)
cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccEEEccccccccccHHHHcccccccEEEccccccccccccHHHHHHHHHHHccccccHHHccccccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHccccHHHHHHHHHHHHHHHHccHHHHHHHHHcccHHHHHHHHccccHHHHHHHHHHHHHHHHccHHHHHHHHHcccHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHcccccccHHHHHcHHHHHHHHHHccccccHHHHHHHHHHHHHHcccccHHHHHHHccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccc
Coil and Loop (DISEMBL)
MNTRRNRIASRALWLLVLLMITMAIGRAervnnsssaglfwstakededqprkaernddstAAAIVndhdeldggfssIDGMLQWAIAKLKETAQDVQRLSPSELKKRQMEIKELMEKLKTPSDAQLIQIAIDDLNNSTLSLEDSQRALQELLILVepidnandlsklGGLSVLVgqlnhpdtdiRKISAWILgkasqnnplvQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCqlenmhkvepplfrdrFFLKSVVDLTASADLDLQEKALAAIKNLLQLRTTEALVLKDFCGLDTALERLRQQLQEVMLEEDQRDYAMDVEALRREVELIFFRKlddsgsnmir
Flexible Loop (DISEMBL)
mntrrnriasrALWLLVLLMITMAIGRAERVNNSSSAGLfwstakededqprkaernddSTAAAIVNDHDELDGGFSSIDGMLQWAIAKLKEtaqdvqrlspselkkRQMEIKELMEKLKTPSDAQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGkasqnnplVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLRTTEALVLKDFCGLDTALERLRQQLQEVMLEEDQRDYAMDVEALRREVELIffrklddsgsnmir
Low Complexity Region (SEG)
MNTRRNRIASRALWLLVLLMITMAIGRAERVNNSSSAGLFWSTAKEDEDQPRKAERNDDSTAAAIVNDHDELDGGFSSIDGMLQWAIAKLKETAQDVQRLSPSELKKRQMEIKELMEKLKTPSDAQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDlsklgglsvlvgqlNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLRTTEALVLKDFCGLDTALERLRQQLQEVMLEEDQRDYAMDVEALRREVELIFFRKLDDSGSNMIR
Disordered region (IsUnstruct)
*******IASRALWLLVLLMITMAIGRAERV*******LFW******************************LDGGFSSIDGMLQWAIAKL************************************LIQIAIDDLNNSTLSL***QRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLRTTEALVLKDFCGLDTALERLRQQLQEVMLEEDQRDYAMDVEALRREVELIFFRK**********
Disordered Region (DISOPRED)
*****N**ASRALWLLVLLMITMA*****************************************************************************************************QLIQIAID**********DSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLRTTEALVLKDFCGLDTALER******************MDVEALRREVELIF*************
Disordered Region (DISEMBL)
********ASRALWLLVLLMITMAIGRAERVNNSSSAGLFWST****************STAAAIVNDHDELDGGFSSIDGMLQWAIAKLKETAQDVQRLSPSELKKRQMEIKELMEKLKTPSDAQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLRTTEALVLKDFCGLDTALERLRQQLQEVMLEEDQRDYAMDVEALRREVELIFFRKLD********
Disordered Region (DISPRO)
**TRRNRIASRALWLLVLLMITMAIGRAERVNNSSS**********DEDQPR*A*******AAAIVNDHDELDGGFSSIDGMLQWAIAKLKETA*******PSELKKRQMEIKELMEKLKTPSDAQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLRTTEALVLKDFCGLDTALERLRQQLQEVMLEEDQRDYAMDVEALRREVELIFFRKLDDS******
Transmembrane Helix (TMHMM)
iiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MNTRRNRIASRALWLLVLLMITMAIGRAERVNNSSSAGLFWSTAKEDEDQPRKAERNDDSTAAAIVNDHDELDGGFSSIDGMLQWAIAKLKETAQDVQRLSPSELKKRQMEIKELMEKLKTPSDAQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLRTTEALVLKDFCGxxxxxxxxxxxxxxxxxxxxxRDYAMDVEALRREVELIFFRKLDDSGSNMIR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	397	2.2.26 [Sep-21-2011]
Q9H173	461	Nucleotide exchange facto	yes	no	0.506	0.436	0.327	2e-15
A1DLW4	216	Hsp70 nucleotide exchange	N/A	no	0.433	0.796	0.302	2e-15
Q32KV6	462	Nucleotide exchange facto	yes	no	0.493	0.424	0.319	3e-15
Q4WDH3	216	Hsp70 nucleotide exchange	yes	no	0.433	0.796	0.297	1e-14
Q0CH70	212	Hsp70 nucleotide exchange	N/A	no	0.410	0.768	0.313	3e-14
Q5AYT7	218	Hsp70 nucleotide exchange	yes	no	0.423	0.770	0.311	6e-14
A2R4I6	287	Hsp70 nucleotide exchange	yes	no	0.302	0.418	0.371	6e-14
Q9EPK6	465	Nucleotide exchange facto	yes	no	0.506	0.432	0.318	7e-14
Q6P6S4	465	Nucleotide exchange facto	yes	no	0.506	0.432	0.318	7e-14
Q4P7F2	285	Hsp70 nucleotide exchange	N/A	no	0.491	0.684	0.286	1e-13

>sp|Q9H173|SIL1_HUMAN Nucleotide exchange factor SIL1 OS=Homo sapiens GN=SIL1 PE=1 SV=1

 Score = 84.0 bits (206), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 72/220 (32%), Positives = 118/220 (53%), Gaps = 19/220 (8%)

Query: 76  FSSIDGMLQWAIAKLKETAQDVQRLSPSELKKRQMEIKEL---MEKLK---------TPS 123
           ++S D  L+ A+AK KE A+     S  E K RQ E+K L   +E+LK           +
Sbjct: 126 YTSQD--LKSALAKFKEGAE---MESSKEDKARQAEVKRLFRPIEELKKDFDELNVVIET 180

Query: 124 DAQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDT 183
           D Q++   I+  N+S+ SLE+   AL +L   V  +DNA DL   GGL V++  LN  + 
Sbjct: 181 DMQIMVRLINKFNSSSSSLEEKIAALFDLEYYVHQMDNAQDLLSFGGLQVVINGLNSTEP 240

Query: 184 DIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKS-SFVEEAVKALYTVSSLIRNN 242
            +++ +A++LG A  +NP VQ + +E GAL KL+ ++ +   +    K L+ + SL+R+ 
Sbjct: 241 LVKEYAAFVLGAAFSSNPKVQVEAIEGGALQKLLVILATEQPLTAKKKVLFALCSLLRHF 300

Query: 243 LAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDL 282
              Q  F    G  +L+ ++     E+ L  + V+L+ DL
Sbjct: 301 PYAQRQFLKLGGLQVLRTLVQEKGTEV-LAVRVVTLLYDL 339

Required for protein translocation and folding in the endoplasmic reticulum (ER). Functions as a nucleotide exchange factor for the ER lumenal chaperone HSPA5.
Homo sapiens (taxid: 9606)

>sp|A1DLW4|FES1_NEOFI Hsp70 nucleotide exchange factor fes1 OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=fes1 PE=3 SV=1

 Score = 83.6 bits (205), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 53/175 (30%), Positives = 91/175 (52%), Gaps = 3/175 (1%)

Query: 78  SIDGMLQWAI--AKLKETAQDVQRLSPSELKKRQMEIKELMEKLKTPSDAQLIQIAIDDL 135
           +++ +L+W+I  +     A D    +P+   +  +  + L      PSDA L++ A++ L
Sbjct: 4   NMNNLLKWSIENSTSARQAADSNDAAPAPTSRSNLNPEMLSALFGGPSDADLMKAAMEAL 63

Query: 136 NNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGK 195
           ++  + LE+   A      L+E IDNAN+L  LG  + LV  L H + ++R+++AW +G 
Sbjct: 64  HSDEVDLENKMIAFDNFEQLIESIDNANNLEPLGLWTPLVELLKHEEAEMRRMAAWCIGT 123

Query: 196 ASQNNPLVQKQVLELGALSKLMKMVKSSFVEEA-VKALYTVSSLIRNNLAGQEMF 249
           A QNN   Q +++    L  L+ M  S     A  KA+Y +SS +RN     + F
Sbjct: 124 AVQNNEKAQDKLIVFNVLPTLVAMSTSDPAPAARKKAVYAISSGVRNYQPAMDEF 178

Functions as a nucleotide exchange factor (NEF) for Hsp70 chaperones which accelerates the release of ADP. Required for fully efficient Hsp70-mediated folding of proteins.

Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) (taxid: 331117)

>sp|Q32KV6|SIL1_BOVIN Nucleotide exchange factor SIL1 OS=Bos taurus GN=SIL1 PE=2 SV=1

 Score = 83.6 bits (205), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 68/213 (31%), Positives = 117/213 (54%), Gaps = 17/213 (7%)

Query: 83  LQWAIAKLKETAQDVQRLSPSELKKRQMEIKEL---MEKLK---------TPSDAQLIQI 130
           L+ A+AK KE A+     +  E ++RQ ++K L   +E+LK           +D Q++  
Sbjct: 132 LKNALAKFKEGAE---MENSKEDQERQAKVKRLFRPIEELKKDFEELNVVIETDMQIMVR 188

Query: 131 AIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISA 190
            I+  N+S+ SLE+   AL +L   V  +DNA DL   GGL V++  LN  +  +++ +A
Sbjct: 189 LINKFNSSSSSLEEKIAALFDLEYYVHQMDNAQDLLSFGGLQVVINGLNSTEPLVKEYAA 248

Query: 191 WILGKASQNNPLVQKQVLELGALSKLMKMVKS-SFVEEAVKALYTVSSLIRNNLAGQEMF 249
           ++LG A  +NP VQ + +E GAL KL+ ++ +   +    KAL+ + SL+R+    Q+ F
Sbjct: 249 FVLGAAFSSNPKVQVEAIEGGALQKLLVILATEQPLTTKKKALFALCSLLRHFPYAQQQF 308

Query: 250 YVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDL 282
               G  +L+ ++     E+ L  + V+L+ DL
Sbjct: 309 LKLGGLQVLRSLVQEKGMEV-LAVRVVTLLYDL 340

Required for protein translocation and folding in the endoplasmic reticulum (ER). Functions as a nucleotide exchange factor for the ER lumenal chaperone HSPA5.

Bos taurus (taxid: 9913)

>sp|Q4WDH3|FES1_ASPFU Hsp70 nucleotide exchange factor fes1 OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=fes1 PE=3 SV=1

 Score = 81.6 bits (200), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 52/175 (29%), Positives = 90/175 (51%), Gaps = 3/175 (1%)

Query: 78  SIDGMLQWAI--AKLKETAQDVQRLSPSELKKRQMEIKELMEKLKTPSDAQLIQIAIDDL 135
           +++ +L+W+I  +     A +     P+   +  +  + L      PSDA L++ A++ L
Sbjct: 4   NMNNLLKWSIENSTSARQAGNSNGTGPAPASRSNLNPEMLSALFGGPSDADLMKAAMEAL 63

Query: 136 NNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGK 195
           ++  + LE+   A      L+E IDNAN+L  LG  + LV  L H + ++R+++AW +G 
Sbjct: 64  HSDEVDLENKMIAFDNFEQLIESIDNANNLEPLGLWTPLVELLKHEEAEMRRMAAWCIGT 123

Query: 196 ASQNNPLVQKQVLELGALSKLMKMVKSSFVEEA-VKALYTVSSLIRNNLAGQEMF 249
           A QNN   Q +++    L  L+ M  S     A  KA+Y +SS +RN     + F
Sbjct: 124 AVQNNEKAQDKLIVFNVLPTLVAMSTSDPAPAARKKAVYAISSGVRNYQPAMDEF 178

Functions as a nucleotide exchange factor (NEF) for Hsp70 chaperones which accelerates the release of ADP. Required for fully efficient Hsp70-mediated folding of proteins.

Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) (taxid: 330879)

>sp|Q0CH70|FES1_ASPTN Hsp70 nucleotide exchange factor fes1 OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) GN=fes1 PE=3 SV=1

 Score = 80.1 bits (196), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 52/166 (31%), Positives = 90/166 (54%), Gaps = 3/166 (1%)

Query: 77  SSIDGMLQWAIAKLKETAQDVQRLSPSELKKRQMEIKELMEKLKTPSDAQLIQIAIDDLN 136
           ++++ +L+W+I      + D    + ++   R +  + +      PSDA L++ +++ L 
Sbjct: 3   ANMNKILKWSIQNSTNASSDQN--AAADATSRGLTPEMMATLFGGPSDADLMKASMEALR 60

Query: 137 NSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKA 196
           +  + LE+   A      L+E IDNAN+L  LG  + LV  L H + D+R+++AW +G A
Sbjct: 61  SDEVDLENKLVAFDNFEQLIESIDNANNLEPLGLWTPLVELLRHEEADMRRMAAWCVGTA 120

Query: 197 SQNNPLVQKQVLELGALSKLMKMVKSSFVEEA-VKALYTVSSLIRN 241
            QNN   Q +++ L AL  L+ M  S     A  KA+Y +SS +RN
Sbjct: 121 VQNNEKAQDKLVVLNALPTLVAMSTSDPNPAARKKAVYALSSAVRN 166

Functions as a nucleotide exchange factor (NEF) for Hsp70 chaperones which accelerates the release of ADP. Required for fully efficient Hsp70-mediated folding of proteins.

Aspergillus terreus (strain NIH 2624 / FGSC A1156) (taxid: 341663)

>sp|Q5AYT7|FES1_EMENI Hsp70 nucleotide exchange factor fes1 OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=fes1 PE=3 SV=1

 Score = 79.0 bits (193), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 53/170 (31%), Positives = 88/170 (51%), Gaps = 2/170 (1%)

Query: 78  SIDGMLQWAIAKLKETAQDVQRLSPSELKKRQMEIKELMEKL-KTPSDAQLIQIAIDDLN 136
           +++ +L+W I     T Q     + +    R     E++  L   PS+A L++ A++ L 
Sbjct: 4   NMNNLLKWGIQNSTATQQTSDSNNNASQAPRSNITPEMLSALFGGPSEADLMKAAMEALR 63

Query: 137 NSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKA 196
           +  + LE+   A      L+E IDNAN+L  LG  + LV  L H + D+R+++AW +G A
Sbjct: 64  SDEVDLENKLIAFDNFEQLIESIDNANNLEPLGLWTPLVELLKHEEPDMRRMAAWCIGTA 123

Query: 197 SQNNPLVQKQVLELGALSKLMKMVKSSFVEEA-VKALYTVSSLIRNNLAG 245
            QNN   Q +++ + A+  L+ M     V     KA+Y +SS +RN   G
Sbjct: 124 VQNNEKAQDKLIVMNAIPTLVSMSTQDPVPAVRKKAVYALSSAVRNYQPG 173

Functions as a nucleotide exchange factor (NEF) for Hsp70 chaperones which accelerates the release of ADP. Required for fully efficient Hsp70-mediated folding of proteins.

Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) (taxid: 227321)

>sp|A2R4I6|FES1_ASPNC Hsp70 nucleotide exchange factor fes1 OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) GN=fes1 PE=3 SV=1

 Score = 79.0 bits (193), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 45/121 (37%), Positives = 72/121 (59%), Gaps = 1/121 (0%)

Query: 122 PSDAQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHP 181
           PS+A L++ A++ L +  + LE+   A      L+E IDNAN+L  LG  + LV  L+H 
Sbjct: 55  PSEADLMKAAMEALRSDEVDLENKLIAFDNFEQLIESIDNANNLEPLGLWTPLVELLDHK 114

Query: 182 DTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEA-VKALYTVSSLIR 240
           + D+R+++AW +G A QNN   Q +++ L AL KL+ +  +        KA+Y +SS +R
Sbjct: 115 EPDMRRMAAWCIGTAVQNNEKAQDKLIVLNALPKLVSLATADTTPVVRKKAVYAISSAVR 174

Query: 241 N 241
           N
Sbjct: 175 N 175

Functions as a nucleotide exchange factor (NEF) for Hsp70 chaperones which accelerates the release of ADP. Required for fully efficient Hsp70-mediated folding of proteins.

Aspergillus niger (strain CBS 513.88 / FGSC A1513) (taxid: 425011)

>sp|Q9EPK6|SIL1_MOUSE Nucleotide exchange factor SIL1 OS=Mus musculus GN=Sil1 PE=1 SV=2

 Score = 79.0 bits (193), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 70/220 (31%), Positives = 120/220 (54%), Gaps = 19/220 (8%)

Query: 76  FSSIDGMLQWAIAKLKETAQDVQRLSPSELKKRQMEIKEL---MEKLKTP---------S 123
           ++S D  L+ A+AK KE  +     S  EL  RQ  +K+L   +E+LK           +
Sbjct: 130 YTSQD--LKSALAKFKEGTE--MENSKDELA-RQATVKQLFRPIEELKKEFDELNVVLET 184

Query: 124 DAQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDT 183
           D Q++   I+  N+S+ SLE+   AL +L   V  +DNA DL   GGL V++  LN  + 
Sbjct: 185 DMQIMVRLINKFNSSSSSLEEKVAALFDLEYYVHQMDNAQDLLSFGGLQVVINGLNSTEP 244

Query: 184 DIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSS-FVEEAVKALYTVSSLIRNN 242
            +++ +A++LG A  +NP VQ + +E GAL KL+ ++ ++  +    K L+ + SL+R+ 
Sbjct: 245 LVKEYAAFVLGAAFSSNPKVQVEAIEGGALQKLLVILATNQPLPAKKKVLFALCSLLRHF 304

Query: 243 LAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDL 282
              Q+ F    G  +L+ ++   S ++ L  + V+L+ DL
Sbjct: 305 PYAQQQFLKLGGLQVLRSLVQEKSAKV-LAVRVVTLLYDL 343

Required for protein translocation and folding in the endoplasmic reticulum (ER). Functions as a nucleotide exchange factor for the ER lumenal chaperone HSPA5.

Mus musculus (taxid: 10090)

>sp|Q6P6S4|SIL1_RAT Nucleotide exchange factor SIL1 OS=Rattus norvegicus GN=Sil1 PE=2 SV=1

 Score = 78.6 bits (192), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 70/220 (31%), Positives = 119/220 (54%), Gaps = 19/220 (8%)

Query: 76  FSSIDGMLQWAIAKLKETAQDVQRLSPSELKKRQMEIKEL---MEKLKTP---------S 123
           ++S D  L+ A+AK KE  +     S  EL  RQ  +K+L   +E+LK           +
Sbjct: 130 YTSQD--LKSALAKFKEGTE--MENSKDELA-RQATVKQLFRPIEELKKEFDELNVVLET 184

Query: 124 DAQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDT 183
           D Q++   I+  N+S+ SLE+   AL +L   V  +DNA DL   GGL V++  LN  + 
Sbjct: 185 DMQIMVRLINKFNSSSSSLEEKVAALFDLEYYVHQMDNAQDLLSFGGLQVVINGLNSTEP 244

Query: 184 DIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKS-SFVEEAVKALYTVSSLIRNN 242
            +++ +A++LG A  +NP VQ + +E GAL KL+ ++ +   +    K L+ + SL+R+ 
Sbjct: 245 LVKEYAAFVLGAAFSSNPKVQVEAIEGGALQKLLVILATEQPLPAKKKVLFALCSLLRHF 304

Query: 243 LAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDL 282
              Q+ F    G  +L+ ++   S ++ L  + V+L+ DL
Sbjct: 305 PYAQQQFLKLGGLQVLRSLVQEKSAKV-LAVRVVTLLYDL 343

Required for protein translocation and folding in the endoplasmic reticulum (ER). Functions as a nucleotide exchange factor for the ER lumenal chaperone HSPA5.

Rattus norvegicus (taxid: 10116)

>sp|Q4P7F2|FES1_USTMA Hsp70 nucleotide exchange factor FES1 OS=Ustilago maydis (strain 521 / FGSC 9021) GN=FES1 PE=3 SV=1

 Score = 77.8 bits (190), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 61/213 (28%), Positives = 109/213 (51%), Gaps = 18/213 (8%)

Query: 82  MLQWAIAKLKET------AQDVQRLSPSELKKRQMEIKE--LMEKLKTPSDAQL----IQ 129
           +L+W +A    T      +Q V+++S      R+ ++ +  L   +   S+AQ+    + 
Sbjct: 10  LLKWGLANSGSTGVASFASQSVEQISADIEAGRRPDLADPNLYNAIMGKSEAQMMAEELS 69

Query: 130 IAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKIS 189
           +AID    ++ +L D   AL    +L+E IDNAN+++ +   S ++  L+ P+ +I+  +
Sbjct: 70  VAID----TSRTLPDRMTALDNFEMLIEQIDNANNMTSMKMWSPIISLLSAPEAEIQTAA 125

Query: 190 AWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMF 249
           AWI+G A QNN   Q  VL+   ++ L+ ++ S   E   KA+Y +S L+++N A    F
Sbjct: 126 AWIIGTAVQNNDKAQMAVLDFHPVAALLDLLHSHVDEVRAKAMYALSGLLKHNPAAMHQF 185

Query: 250 YVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDL 282
               G  ML   L + +  +R  RK   L+  L
Sbjct: 186 DQLDGWNMLNMALVDPNLGLR--RKTAFLINAL 216

Functions as a nucleotide exchange factor (NEF) for Hsp70 chaperones which accelerates the release of ADP. Required for fully efficient Hsp70-mediated folding of proteins.

Ustilago maydis (strain 521 / FGSC 9021) (taxid: 237631)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	397
359473854	395	PREDICTED: hsp70 nucleotide exchange fac	0.921	0.926	0.727	1e-150
255543300	395	sil1, putative [Ricinus communis] gi|223	0.939	0.944	0.702	1e-149
224053615	400	predicted protein [Populus trichocarpa]	0.894	0.887	0.701	1e-141
296085572	320	unnamed protein product [Vitis vinifera]	0.773	0.959	0.769	1e-132
449445798	395	PREDICTED: nucleotide exchange factor SI	0.952	0.956	0.641	1e-128
297819910	382	binding protein [Arabidopsis lyrata subs	0.924	0.960	0.610	1e-124
15231095	382	nucleotide exchange factor SIL1 [Arabido	0.924	0.960	0.597	1e-122
356574918	372	PREDICTED: nucleotide exchange factor SI	0.899	0.959	0.602	1e-113
307135818	444	SIL1 [Cucumis melo subsp. melo]	0.715	0.639	0.710	1e-111
357462195	378	Nucleotide exchange factor SIL1 [Medicag	0.801	0.841	0.640	1e-105

>gi|359473854|ref|XP_002269010.2| PREDICTED: hsp70 nucleotide exchange factor FES1 [Vitis vinifera]

 Score =  538 bits (1386), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 272/374 (72%), Positives = 313/374 (83%), Gaps = 8/374 (2%)

Query: 20  MITMAIGRAERVNNSSSAGLFWSTAKEDEDQPRKAERNDDSTAAAIVNDHDELDGGFSSI 79
            +   + +A+RVN SSS GLFWSTAKE+ D  RK+E  + +     VND+ +LDGGFSS+
Sbjct: 17  FVGAVMAQADRVNKSSSGGLFWSTAKEEGDLMRKSEAQESTVG---VNDNADLDGGFSSL 73

Query: 80  DGMLQWAIA-----KLKETAQDVQRLSPSELKKRQMEIKELMEKLKTPSDAQLIQIAIDD 134
           DGMLQWAI      KLKETAQDVQR SP+ELKKRQMEIKELMEKLK PSDAQL+QIAI D
Sbjct: 74  DGMLQWAIGHSDPTKLKETAQDVQRFSPNELKKRQMEIKELMEKLKMPSDAQLMQIAIAD 133

Query: 135 LNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILG 194
           LNNS+L +ED  RALQELLILVEPIDNANDL+KLGGL+V++ +L++PD +IRK SAWILG
Sbjct: 134 LNNSSLPMEDHHRALQELLILVEPIDNANDLNKLGGLTVVIRELDNPDPEIRKTSAWILG 193

Query: 195 KASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAG 254
           KASQNNP+VQKQVLELGAL KLMKMV SSFVEEA KALY VS+LIRNNLA QE+FY +AG
Sbjct: 194 KASQNNPVVQKQVLELGALPKLMKMVNSSFVEEATKALYAVSALIRNNLAAQELFYAKAG 253

Query: 255 DLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASA 314
           DLMLQDIL N S +IRL RK V LVGDLA+CQLE+ HK E P F +R FLKSVVDLTAS+
Sbjct: 254 DLMLQDILSNPSIDIRLRRKTVFLVGDLAECQLESTHKAELPFFSNRHFLKSVVDLTASS 313

Query: 315 DLDLQEKALAAIKNLLQLRTTEALVLKDFCGLDTALERLRQQLQEVMLEEDQRDYAMDVE 374
           DLDLQEKAL A+KNLLQLRTTEALV KD+C LD ALER+R+QLQ++M EE QRDY MD+E
Sbjct: 314 DLDLQEKALIAVKNLLQLRTTEALVFKDYCDLDGALERMRKQLQQLMDEEYQRDYVMDLE 373

Query: 375 ALRREVELIFFRKL 388
           +L REVELIF +KL
Sbjct: 374 SLCREVELIFHKKL 387

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255543300|ref|XP_002512713.1| sil1, putative [Ricinus communis] gi|223548674|gb|EEF50165.1| sil1, putative [Ricinus communis]

 Score =  534 bits (1376), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 267/380 (70%), Positives = 322/380 (84%), Gaps = 7/380 (1%)

Query: 15  LLVLLMITMAIGRAERVNNSSSA-GLFWSTAKEDEDQPRKAERNDDSTAAAIVNDHDELD 73
           L+ +++ITM +   ER+N SSS+ G+FWST KE+ D  RKAE ++D +AAA+VNDHD LD
Sbjct: 9   LVTVILITM-VAEGERLNKSSSSSGVFWSTVKEESDLLRKAEPDEDPSAAAVVNDHDHLD 67

Query: 74  GGFSSIDGMLQWAIA-----KLKETAQDVQRLSPSELKKRQMEIKELMEKLKTPSDAQLI 128
           GGFSS+DGMLQWA+      KLKETAQDV+RLSP++LK RQ+EIKELM++LK PSDA L+
Sbjct: 68  GGFSSLDGMLQWAVGHSDPEKLKETAQDVRRLSPTDLKNRQLEIKELMDELKMPSDAHLM 127

Query: 129 QIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKI 188
           Q AI+DL+NS+L LED  RALQELLILVEPIDNANDLSKLGGL VL+ +LNHPD++IR+I
Sbjct: 128 QNAINDLSNSSLPLEDHHRALQELLILVEPIDNANDLSKLGGLGVLIRELNHPDSNIRRI 187

Query: 189 SAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEM 248
           SAW+LGKASQNNP VQKQVLE+GAL+KLM+MVKS+  EE +KALY VS+LIRNNLAGQE+
Sbjct: 188 SAWVLGKASQNNPFVQKQVLEMGALNKLMQMVKSNCAEEGIKALYAVSALIRNNLAGQEL 247

Query: 249 FYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVV 308
           FY EAGD MLQ+ILG+SS +IRL RKAV LV DLA+CQLEN+ + E P F +RFFLKSVV
Sbjct: 248 FYAEAGDQMLQEILGDSSTDIRLRRKAVFLVADLAECQLENVGRAELPFFSNRFFLKSVV 307

Query: 309 DLTASADLDLQEKALAAIKNLLQLRTTEALVLKDFCGLDTALERLRQQLQEVMLEEDQRD 368
           DL +S DLDLQEKAL A+KNLLQL+T EA V+KDFCGLD ALER+RQQL  +M +E  RD
Sbjct: 308 DLVSSTDLDLQEKALVAVKNLLQLKTIEASVIKDFCGLDGALERMRQQLHVLMTQETYRD 367

Query: 369 YAMDVEALRREVELIFFRKL 388
           YA D+E+LRREVELIF+ KL
Sbjct: 368 YATDIESLRREVELIFYSKL 387

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224053615|ref|XP_002297899.1| predicted protein [Populus trichocarpa] gi|222845157|gb|EEE82704.1| predicted protein [Populus trichocarpa]

 Score =  508 bits (1309), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 254/362 (70%), Positives = 308/362 (85%), Gaps = 7/362 (1%)

Query: 34  SSSAGLFWSTAKEDEDQPRKAE--RNDDSTAAAIVNDHDELDGGFSSIDGMLQWAIA--- 88
           S++AGL WST K++ D   KAE   +DDS+AAA+VNDHD+LDGGFSS++GML WAI    
Sbjct: 31  SATAGLLWSTGKDEPDLLSKAEPENSDDSSAAAVVNDHDDLDGGFSSLEGMLHWAIGHSD 90

Query: 89  --KLKETAQDVQRLSPSELKKRQMEIKELMEKLKTPSDAQLIQIAIDDLNNSTLSLEDSQ 146
             KLKE A+DVQRLS SEL+KRQ+E+KELMEK+K PSDA+L+ +AIDDLNNS+ SLED Q
Sbjct: 91  PTKLKENAEDVQRLSASELQKRQIELKELMEKMKMPSDAELMHMAIDDLNNSSSSLEDRQ 150

Query: 147 RALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQ 206
           RALQELLILVEP+DNANDL+KLGGL++++ +L+HPD DIR++SAW+LGKA QNN  VQKQ
Sbjct: 151 RALQELLILVEPLDNANDLNKLGGLAIVIQELDHPDHDIRRLSAWVLGKACQNNAAVQKQ 210

Query: 207 VLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSS 266
           +LELGALSKL+KMVKSS +EEA+KALY VS+LI+N+LAGQE FY E GD MLQ+IL NSS
Sbjct: 211 ILELGALSKLIKMVKSSSIEEAIKALYAVSTLIQNHLAGQEFFYAEDGDAMLQEILSNSS 270

Query: 267 FEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAI 326
            +IRL RKAVS+V DLA+ QLEN+ + E P FR+RFFLKSVVDLTAS DLDLQEKAL A+
Sbjct: 271 NDIRLLRKAVSVVADLAEYQLENIIRAESPCFRNRFFLKSVVDLTASTDLDLQEKALVAV 330

Query: 327 KNLLQLRTTEALVLKDFCGLDTALERLRQQLQEVMLEEDQRDYAMDVEALRREVELIFFR 386
           KNLLQL+TT+ALVLKD C LD +LER+R+QL ++M EED RDYA+D+E LR EVELIF  
Sbjct: 331 KNLLQLKTTDALVLKDLCNLDGSLERMRRQLLDLMAEEDHRDYAVDLETLRGEVELIFHE 390

Query: 387 KL 388
           KL
Sbjct: 391 KL 392

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296085572|emb|CBI29304.3| unnamed protein product [Vitis vinifera]

 Score =  476 bits (1226), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 240/312 (76%), Positives = 270/312 (86%), Gaps = 5/312 (1%)

Query: 82  MLQWAIA-----KLKETAQDVQRLSPSELKKRQMEIKELMEKLKTPSDAQLIQIAIDDLN 136
           MLQWAI      KLKETAQDVQR SP+ELKKRQMEIKELMEKLK PSDAQL+QIAI DLN
Sbjct: 1   MLQWAIGHSDPTKLKETAQDVQRFSPNELKKRQMEIKELMEKLKMPSDAQLMQIAIADLN 60

Query: 137 NSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKA 196
           NS+L +ED  RALQELLILVEPIDNANDL+KLGGL+V++ +L++PD +IRK SAWILGKA
Sbjct: 61  NSSLPMEDHHRALQELLILVEPIDNANDLNKLGGLTVVIRELDNPDPEIRKTSAWILGKA 120

Query: 197 SQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDL 256
           SQNNP+VQKQVLELGAL KLMKMV SSFVEEA KALY VS+LIRNNLA QE+FY +AGDL
Sbjct: 121 SQNNPVVQKQVLELGALPKLMKMVNSSFVEEATKALYAVSALIRNNLAAQELFYAKAGDL 180

Query: 257 MLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADL 316
           MLQDIL N S +IRL RK V LVGDLA+CQLE+ HK E P F +R FLKSVVDLTAS+DL
Sbjct: 181 MLQDILSNPSIDIRLRRKTVFLVGDLAECQLESTHKAELPFFSNRHFLKSVVDLTASSDL 240

Query: 317 DLQEKALAAIKNLLQLRTTEALVLKDFCGLDTALERLRQQLQEVMLEEDQRDYAMDVEAL 376
           DLQEKAL A+KNLLQLRTTEALV KD+C LD ALER+R+QLQ++M EE QRDY MD+E+L
Sbjct: 241 DLQEKALIAVKNLLQLRTTEALVFKDYCDLDGALERMRKQLQQLMDEEYQRDYVMDLESL 300

Query: 377 RREVELIFFRKL 388
            REVELIF +KL
Sbjct: 301 CREVELIFHKKL 312

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449445798|ref|XP_004140659.1| PREDICTED: nucleotide exchange factor SIL1-like [Cucumis sativus]

 Score =  463 bits (1192), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 252/393 (64%), Positives = 306/393 (77%), Gaps = 15/393 (3%)

Query: 4   RRNRIASRALWLLVLLMITMAIGRAERVNNSSSAGLFWSTAKEDED---QPRKAERNDDS 60
           RR+ +    LW  + L+I  A       N+SS  GL WS+AK++ D     R  E +  +
Sbjct: 2   RRSLVVGLCLWFSLTLVIVDA-------NDSSLEGLIWSSAKQEGDLLIDHRPQEDSSAA 54

Query: 61  TAAAIVNDHDELDGGFSSIDGMLQWAI-----AKLKETAQDVQRLSPSELKKRQMEIKEL 115
            AA++V+D D  DGGFSS+D MLQWAI     AKLK+TAQDV+RLSP+E+KKRQ EIK+L
Sbjct: 55  AAASVVHDADGFDGGFSSLDSMLQWAIGHSDPAKLKDTAQDVKRLSPNEIKKRQEEIKDL 114

Query: 116 MEKLKTPSDAQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLV 175
           +E+LK PSDA+L+QIA+DDL NS+LSLED  RALQELL+LVEPIDNANDL KLGGL+VL 
Sbjct: 115 IEELKLPSDAKLMQIAVDDLKNSSLSLEDRHRALQELLVLVEPIDNANDLDKLGGLAVLT 174

Query: 176 GQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTV 235
            +LNH D D+RKI+AWILGKASQNNP+VQKQVLELGAL+KL+ M KS FVEEA+KALY +
Sbjct: 175 RELNHVDPDVRKIAAWILGKASQNNPIVQKQVLELGALAKLVSMAKSDFVEEAIKALYAI 234

Query: 236 SSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEP 295
           SSL++NNL+GQE+FY EAG++MLQDIL NSS +IRL +KAV LV DLA  QLE   + E 
Sbjct: 235 SSLVQNNLSGQELFYAEAGEIMLQDILSNSSMDIRLQKKAVFLVSDLAVTQLEKPDEAER 294

Query: 296 PLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLRTTEALVLKDFCGLDTALERLRQ 355
           P F DR FLKSVV+L  S D+DLQEKAL A+KNLL LRTT+A VLK+FCGLD ALER+R 
Sbjct: 295 PFFGDRLFLKSVVNLIHSTDIDLQEKALIALKNLLLLRTTKAQVLKEFCGLDAALERMRM 354

Query: 356 QLQEVMLEEDQRDYAMDVEALRREVELIFFRKL 388
           +L+ +M EED RDYAMDVE LR +VEL F  KL
Sbjct: 355 KLKVLMEEEDHRDYAMDVEDLRSQVELTFLEKL 387

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297819910|ref|XP_002877838.1| binding protein [Arabidopsis lyrata subsp. lyrata] gi|297323676|gb|EFH54097.1| binding protein [Arabidopsis lyrata subsp. lyrata]

 Score =  451 bits (1159), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 234/383 (61%), Positives = 299/383 (78%), Gaps = 16/383 (4%)

Query: 11  RALWLLVLLMITMAIGRAERVNNSSSAGLFWSTAKEDEDQPRKAERNDDSTAAAIVNDHD 70
           R + LLV++ + +    AE+VN  SS G+ WSTA+++      AE  +DS    ++ + D
Sbjct: 8   RCMLLLVVISL-VGCSIAEKVN--SSGGIVWSTARDE------AELVEDS--GVVIGEQD 56

Query: 71  ELDGGFSSIDGMLQWAI-----AKLKETAQDVQRLSPSELKKRQMEIKELMEKLKTPSDA 125
           ++DGGFSS+DGML WAI     A LKE A+D +++S  EL+KRQ+E+KEL+EKLK PSDA
Sbjct: 57  QIDGGFSSLDGMLHWAIGHSDPATLKEAAKDAEKMSLDELQKRQLELKELVEKLKMPSDA 116

Query: 126 QLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDI 185
            L+QIAIDDL NS+LSLED  RALQELLILVEPIDNANDLSK GGL V+ G+LNH DT++
Sbjct: 117 NLMQIAIDDLKNSSLSLEDRHRALQELLILVEPIDNANDLSKSGGLRVVAGELNHDDTEV 176

Query: 186 RKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAG 245
           RK++AW+LGKASQNNP VQ+QVLELGAL+ L+KMV SS  EEAVKAL+ VS+LIRNN+AG
Sbjct: 177 RKLAAWVLGKASQNNPFVQEQVLELGALTTLIKMVNSSSDEEAVKALFAVSALIRNNIAG 236

Query: 246 QEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLK 305
           Q+MFY   G +ML+D++ N S +I+L RKAV LVGDLA+ QL+N  K E P+F+DRFFLK
Sbjct: 237 QDMFYAAHGYIMLKDVMSNGSLDIKLRRKAVFLVGDLAESQLQNTGKDELPIFKDRFFLK 296

Query: 306 SVVDLTASADLDLQEKALAAIKNLLQLRTTEALVLKDFCGLDTALERLRQQLQEVMLEED 365
           SVVDL    DLDLQEKAL AI+ LLQL++ E  +LK+FCGL+  LER++ QL+E M +E 
Sbjct: 297 SVVDLIVVLDLDLQEKALTAIQTLLQLKSIEPQILKEFCGLEETLERMKLQLEESMADEY 356

Query: 366 QRDYAMDVEALRREVELIFFRKL 388
           +RDYA DVE++R EVELIF +KL
Sbjct: 357 KRDYAADVESIRGEVELIFRQKL 379

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15231095|ref|NP_190766.1| nucleotide exchange factor SIL1 [Arabidopsis thaliana] gi|4678927|emb|CAB41318.1| hypothetical protein [Arabidopsis thaliana] gi|20268764|gb|AAM14085.1| unknown protein [Arabidopsis thaliana] gi|21689669|gb|AAM67456.1| unknown protein [Arabidopsis thaliana] gi|332645350|gb|AEE78871.1| nucleotide exchange factor SIL1 [Arabidopsis thaliana]

 Score =  442 bits (1138), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 229/383 (59%), Positives = 300/383 (78%), Gaps = 16/383 (4%)

Query: 11  RALWLLVLLMITMAIGRAERVNNSSSAGLFWSTAKEDEDQPRKAERNDDSTAAAIVNDHD 70
           R ++LLV++ + +    AE+VN  SS G+ WS+ +++      AE  +DS    ++ + D
Sbjct: 8   RYVFLLVVISL-VGFSIAEKVN--SSGGMVWSSVRDE------AELVEDS--GVVIGEQD 56

Query: 71  ELDGGFSSIDGMLQWAI-----AKLKETAQDVQRLSPSELKKRQMEIKELMEKLKTPSDA 125
           ++DGGFSS+DGML WAI     A LKE A+D +++S  EL+KRQ+E+KEL+EKLK PS+A
Sbjct: 57  QIDGGFSSLDGMLHWAIGHSDPATLKEAAKDAEKMSLDELQKRQLELKELVEKLKMPSNA 116

Query: 126 QLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDI 185
           +L+QIAIDDLNNS+LSLED  RALQELLILVEPIDNANDLSK GGL V+ G+LNH DT++
Sbjct: 117 KLMQIAIDDLNNSSLSLEDRHRALQELLILVEPIDNANDLSKSGGLRVVAGELNHDDTEV 176

Query: 186 RKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAG 245
           RK++AW+LGKASQNNP VQ+QVLELGAL+ L+KMV SS  EEAVKAL+ VS+LIRNN+AG
Sbjct: 177 RKLAAWVLGKASQNNPFVQEQVLELGALTTLIKMVNSSSTEEAVKALFAVSALIRNNIAG 236

Query: 246 QEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLK 305
           Q++F+   G +ML+D++ N S +++L RKAV LVGDLA+ QL+N  K E P+F+DR FLK
Sbjct: 237 QDLFFAAHGYIMLRDVMNNGSLDMKLRRKAVFLVGDLAESQLQNTEKDELPIFKDRLFLK 296

Query: 306 SVVDLTASADLDLQEKALAAIKNLLQLRTTEALVLKDFCGLDTALERLRQQLQEVMLEED 365
           SVVDL    DLDLQEKAL AI+ LLQL++ E  VLK+ CGL+ ALER++ QL+E M +E 
Sbjct: 297 SVVDLIVVLDLDLQEKALTAIQTLLQLKSIEPQVLKESCGLEEALERMKLQLEESMADEY 356

Query: 366 QRDYAMDVEALRREVELIFFRKL 388
           +RDYA DVE++R EVELIF +KL
Sbjct: 357 KRDYAADVESIRGEVELIFRQKL 379

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356574918|ref|XP_003555590.1| PREDICTED: nucleotide exchange factor SIL1-like [Glycine max]

 Score =  414 bits (1065), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 232/385 (60%), Positives = 272/385 (70%), Gaps = 28/385 (7%)

Query: 16  LVLLMITMAI----GRAERVNNSSSAGLFWSTAKEDEDQPRKAERNDDSTAAAIVNDHDE 71
           L LL  T A+    G AE   N +S GL WSTA E+ D     +                
Sbjct: 7   LSLLFFTAAVAAETGGAE--PNLTSGGLLWSTAAEESDLAPPPD---------------- 48

Query: 72  LDGGFSSIDGMLQWAIA-----KLKETAQDVQRLSPSELKKRQMEIKELMEKLKTPSDAQ 126
            DGGFSS+DGMLQWAI+     KLKE+A+  QRL PSEL KRQ EIKE+MEK+K PSDA+
Sbjct: 49  -DGGFSSLDGMLQWAISHSDPGKLKESAEAQQRLPPSELYKRQFEIKEIMEKMKMPSDAE 107

Query: 127 LIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIR 186
           L++IAI DLNN + SLED  RALQELL LVE IDNANDLSKLGGL  +  +L   D  IR
Sbjct: 108 LMRIAISDLNNVSTSLEDRHRALQELLELVESIDNANDLSKLGGLLAVREELYCSDPGIR 167

Query: 187 KISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQ 246
            I+AW+LGKASQNN +VQ+Q+LELG LS+LMKMV S+ +EEA KALY VS+LIRN+LA Q
Sbjct: 168 TIAAWVLGKASQNNAIVQQQILELGVLSRLMKMVNSNSMEEANKALYAVSALIRNDLASQ 227

Query: 247 EMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKS 306
            +FY EAG  MLQDIL N+S ++RL RKAV L+ DLA  QLEN+ + E P F D+  LK+
Sbjct: 228 GLFYAEAGGWMLQDILSNTSLDVRLRRKAVRLLADLAAYQLENVDREEQPFFNDQDLLKA 287

Query: 307 VVDLTASADLDLQEKALAAIKNLLQLRTTEALVLKDFCGLDTALERLRQQLQEVMLEEDQ 366
           VVDLT S DLDLQEKAL AIK+LLQLRTTEA V KDFC L  AL R+RQ L ++M +E Q
Sbjct: 288 VVDLTTSTDLDLQEKALVAIKSLLQLRTTEARVFKDFCALGDALNRMRQLLHDLMADEYQ 347

Query: 367 RDYAMDVEALRREVELIFFRKLDDS 391
           RDY MDVE LR EVE  F RKL  S
Sbjct: 348 RDYVMDVENLRVEVEHTFQRKLKQS 372

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|307135818|gb|ADN33690.1| SIL1 [Cucumis melo subsp. melo]

 Score =  409 bits (1052), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 214/301 (71%), Positives = 254/301 (84%)

Query: 88  AKLKETAQDVQRLSPSELKKRQMEIKELMEKLKTPSDAQLIQIAIDDLNNSTLSLEDSQR 147
           AKLK+TAQDV++LSPSE+KKRQ EIK+L+E+LK PSDA+L+QIA+DDL NS+LSLED  R
Sbjct: 139 AKLKDTAQDVKQLSPSEIKKRQEEIKDLIEELKLPSDAKLMQIAVDDLKNSSLSLEDRHR 198

Query: 148 ALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQV 207
           ALQELL+LVEPIDNANDL KLGGL+VL  +LNH D D+RKI+AWILGKASQNNP+VQKQV
Sbjct: 199 ALQELLVLVEPIDNANDLDKLGGLAVLTRELNHVDPDVRKIAAWILGKASQNNPIVQKQV 258

Query: 208 LELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSF 267
           LELGAL+KL+ MVKS FVEEA+KALY +SSL++NNL+GQ++FY EAG+ MLQDIL NSS 
Sbjct: 259 LELGALAKLVSMVKSDFVEEAIKALYAISSLVQNNLSGQKLFYAEAGETMLQDILSNSSM 318

Query: 268 EIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIK 327
           +IRL +KAV L  DL   QLE   + E P F DRFFLKSVV+L  S D+DLQEKAL A+K
Sbjct: 319 DIRLQKKAVFLASDLTVTQLEKPDEAERPFFGDRFFLKSVVNLIHSTDIDLQEKALIALK 378

Query: 328 NLLQLRTTEALVLKDFCGLDTALERLRQQLQEVMLEEDQRDYAMDVEALRREVELIFFRK 387
           NLL LRTT+A VLK+FCGLD ALER+R +L+ +M EED RDYAMDVE LR +VE IF  K
Sbjct: 379 NLLLLRTTKAQVLKEFCGLDAALERMRMKLKVLMEEEDHRDYAMDVEDLRSQVEQIFLEK 438

Query: 388 L 388
           L
Sbjct: 439 L 439

Source: Cucumis melo subsp. melo

Species: Cucumis melo

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357462195|ref|XP_003601379.1| Nucleotide exchange factor SIL1 [Medicago truncatula] gi|355490427|gb|AES71630.1| Nucleotide exchange factor SIL1 [Medicago truncatula]

 Score =  387 bits (993), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 207/323 (64%), Positives = 253/323 (78%), Gaps = 5/323 (1%)

Query: 73  DGGFSSIDGMLQWAIA-----KLKETAQDVQRLSPSELKKRQMEIKELMEKLKTPSDAQL 127
           DGGF S+D ML WAI+     KLKE+AQ  Q+LSPSEL+KRQ+EIKE+MEK K  SDA+L
Sbjct: 55  DGGFPSMDSMLHWAISHSDPEKLKESAQSHQKLSPSELQKRQLEIKEIMEKTKMLSDAEL 114

Query: 128 IQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRK 187
           ++IAI DLNN++ SLED  RAL ELL LVEP+DNANDL+KLGGL  +  +L H D+ IR 
Sbjct: 115 MKIAIKDLNNASTSLEDRYRALLELLELVEPLDNANDLNKLGGLHAVTQELKHYDSGIRA 174

Query: 188 ISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQE 247
            +AW+LGKASQNNP  Q+QVLELG LS+L+ MVKSS +EE +KALY VS+L RNNLA QE
Sbjct: 175 TAAWVLGKASQNNPTFQQQVLELGVLSRLIAMVKSSSIEEGIKALYAVSALTRNNLANQE 234

Query: 248 MFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSV 307
           +FY E G LMLQDIL N+S +I+L RKAV L+ DLA  QLEN++K EPP F ++  LKSV
Sbjct: 235 LFYAEGGGLMLQDILRNASIDIKLRRKAVLLLTDLADYQLENVNKDEPPFFNNQDLLKSV 294

Query: 308 VDLTASADLDLQEKALAAIKNLLQLRTTEALVLKDFCGLDTALERLRQQLQEVMLEEDQR 367
           VDLTAS DLDLQEKAL AIK+LLQLRTT+A V +D C L  AL R ++ L ++M +EDQR
Sbjct: 295 VDLTASTDLDLQEKALVAIKSLLQLRTTKARVFRDLCALGDALNRTKELLHDLMADEDQR 354

Query: 368 DYAMDVEALRREVELIFFRKLDD 390
           DY MDVE +R EVE I+ RKL++
Sbjct: 355 DYVMDVENVRIEVESIYHRKLEN 377

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	397
TAIR|locus:2083800	382	AT3G51980 "AT3G51980" [Arabido	0.924	0.960	0.574	4.4e-107
UNIPROTKB|F1NWG7	380	SIL1 "Uncharacterized protein"	0.798	0.834	0.262	1.3e-15
TAIR|locus:2083559	363	Fes1A "Fes1A" [Arabidopsis tha	0.725	0.793	0.272	6.3e-14
TAIR|locus:2185113	324	Fes1C "Fes1C" [Arabidopsis tha	0.664	0.814	0.291	1.4e-13
TAIR|locus:2084365	363	Fes1B "Fes1B" [Arabidopsis tha	0.675	0.738	0.279	2.5e-13
ASPGD|ASPL0000004813	218	AN6543 [Emericella nidulans (t	0.423	0.770	0.276	3.3e-13
UNIPROTKB|Q32KV6	462	SIL1 "Nucleotide exchange fact	0.778	0.668	0.277	1.5e-11
UNIPROTKB|Q9H173	461	SIL1 "Nucleotide exchange fact	0.493	0.425	0.305	4.3e-11
MGI|MGI:1932040	465	Sil1 "endoplasmic reticulum ch	0.775	0.662	0.283	5.7e-11
RGD|735103	465	Sil1 "SIL1 homolog, endoplasmi	0.493	0.421	0.295	2.7e-10

TAIR|locus:2083800 AT3G51980 "AT3G51980" [Arabidopsis thaliana (taxid:3702)]

 Score = 1059 (377.8 bits), Expect = 4.4e-107, P = 4.4e-107
 Identities = 220/383 (57%), Positives = 289/383 (75%)

Query:    11 RALWLLVLLMITMAIGRAERVNNSSSAGLFWSTAKEDEDQPRKAERNDDSTAAAIVNDHD 70
             R ++LLV++ + +    AE+VN  SS G+ WS+ +++      AE  +DS    ++ + D
Sbjct:     8 RYVFLLVVISL-VGFSIAEKVN--SSGGMVWSSVRDE------AELVEDS--GVVIGEQD 56

Query:    71 ELDGGFSSIDGMLQWAI-----AKLKETAQDVQRLSPSELKKRQMEIKELMEKLKTPSDA 125
             ++DGGFSS+DGML WAI     A LKE A+D +++S  EL+KRQ+E+KEL+EKLK PS+A
Sbjct:    57 QIDGGFSSLDGMLHWAIGHSDPATLKEAAKDAEKMSLDELQKRQLELKELVEKLKMPSNA 116

Query:   126 QLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDXXXXXXXXXXXXXXNHPDTDI 185
             +L+QIAIDDLNNS+LSLED  RALQELLILVEPIDNAND              NH DT++
Sbjct:   117 KLMQIAIDDLNNSSLSLEDRHRALQELLILVEPIDNANDLSKSGGLRVVAGELNHDDTEV 176

Query:   186 RKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAG 245
             RK++AW+LGKASQNNP VQ+QVLELGAL+ L+KMV SS  EEAVKAL+ VS+LIRNN+AG
Sbjct:   177 RKLAAWVLGKASQNNPFVQEQVLELGALTTLIKMVNSSSTEEAVKALFAVSALIRNNIAG 236

Query:   246 QEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLK 305
             Q++F+   G +ML+D++ N S +++L RKAV LVGDLA+ QL+N  K E P+F+DR FLK
Sbjct:   237 QDLFFAAHGYIMLRDVMNNGSLDMKLRRKAVFLVGDLAESQLQNTEKDELPIFKDRLFLK 296

Query:   306 SVVDLTASADLDLQEKALAAIKNLLQLRTTEALVLKDFCGLDTALERLRQQLQEVMLEED 365
             SVVDL    DLDLQEKAL AI+ LLQL++ E  VLK+ CGL+ ALER++ QL+E M +E 
Sbjct:   297 SVVDLIVVLDLDLQEKALTAIQTLLQLKSIEPQVLKESCGLEEALERMKLQLEESMADEY 356

Query:   366 QRDYAMDVEALRREVELIFFRKL 388
             +RDYA DVE++R EVELIF +KL
Sbjct:   357 KRDYAADVESIRGEVELIFRQKL 379

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0005783 "endoplasmic reticulum" evidence=IDA

UNIPROTKB|F1NWG7 SIL1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 218 (81.8 bits), Expect = 1.3e-15, P = 1.3e-15
 Identities = 91/347 (26%), Positives = 167/347 (48%)

Query:    44 AKEDEDQPRKAERNDDSTAAAIVNDHDELDGGFSSIDGMLQWAIAKLKETAQDVQRLSPS 103
             A+  + +  K++  ++     + N  D     F+S +  L+ A+AK+KE+ +  +     
Sbjct:    20 ARLPDSESGKSDTKEEKRRKRL-NKMDIDTNSFTSQE--LKKALAKMKESEKAERMAHEE 76

Query:   104 ELKK--RQME-IKELMEKL--KTPSDAQLIQIAIDDLNNSTLSLEDSQRALQELLILVEP 158
             E++K  R +E +KE  EKL  K  +D +++   I   N+S  +L++   AL +L   V  
Sbjct:    77 EVRKKFRPIEQLKEEFEKLNVKMETDYEIMDKLISKFNSSASTLDEKVAALYDLEYYVHQ 136

Query:   159 IDNANDXXXXXXXXXXXXXXNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMK 218
             +DNA D              N  +  +++ +A++LG A  +NP VQ + +E GAL KL+ 
Sbjct:   137 VDNAKDFLSMGGLRLVIEGLNSTEAVLKEHAAFVLGAALSSNPKVQIEAIEGGALQKLLV 196

Query:   219 MVKSSFVEEAVK--ALYTVSSLIRNNLAGQEMFYVEAGDLMLQDIL---GNSSFEIR--- 270
             +V +    +AVK  AL+ +SSL+R+    Q+ F    G  +L+ +    G S+  +R   
Sbjct:   197 IVATE-QPQAVKKKALFALSSLLRHFPYAQQQFLKLGGLQVLRGLFRQPGTSALCVRAVT 255

Query:   271 -LHRKAVSLV-------GDLAKCQLENMHKVE-PPLFRDRFFLKSVVDLTASADLDLQEK 321
              L+   V  +       GD A+ +++   +V+  P   ++ +  +V  L A  + D +EK
Sbjct:   256 LLYDLFVEKMLLEDSQHGDHAEEKVQQYRRVQLVPAVLEQDWCVAVPGLLALPEHDAREK 315

Query:   322 ALAAIKNLLQLRTTEALVLKDFCGLDTALERLRQQLQEVMLEEDQRD 368
              L A+  L++         +    L   L  LR + +E+   E +RD
Sbjct:   316 VLKAVAVLMEFCRER---FRGDAALGATLGLLRSEYEELAAAE-RRD 358

GO:0005783 "endoplasmic reticulum" evidence=IEA

TAIR|locus:2083559 Fes1A "Fes1A" [Arabidopsis thaliana (taxid:3702)]

 Score = 203 (76.5 bits), Expect = 6.3e-14, P = 6.3e-14
 Identities = 84/308 (27%), Positives = 148/308 (48%)

Query:    80 DGMLQWAIAKLKETAQDVQRLSPSELKKRQMEI--KELMEKLKTPSDAQLI-QIAIDDLN 136
             DG+L+W+++    T +  ++LS  + +K  ME    + ++ +K   +  L+ Q     L 
Sbjct:     9 DGLLKWSLSHADGT-RPTRQLSEED-RKWFMEAMQSQTVDVVKRMKEITLVMQTPEQVLV 66

Query:   137 NSTLSLEDSQRALQELLILVEPIDNANDXXXXXXXXXXXXXXNHPDTDIRKISAWILGKA 196
                ++ ED Q  L EL   VE ID AND               +   +IR  +A ++   
Sbjct:    67 EHGVTPEDIQDLLDELQEHVESIDMANDLHSIGGLVPLLSFLKNSHANIRAKAADVVSTI 126

Query:   197 SQNNPLVQKQVLELGALSKLMKMVKSSF-VEEAVKALYTVSSLIRNNLAGQEMFYVEAGD 255
              QNNP  Q+ V+E  AL  L+    S   +    +AL  +SSLIR+N  G   F +  G 
Sbjct:   127 VQNNPRSQELVMETNALESLLSNFTSDTDIHARTQALGAISSLIRHNKPGVTAFKLANGY 186

Query:   256 LMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASAD 315
               L+D L + S  +R  RKA++L+  L + + ++   +   L     F + ++ L +S D
Sbjct:   187 AGLRDALASDS--VRFQRKALNLLQYLLQ-EDDSDRSIATGLG----FPRVMMHLASSDD 239

Query:   316 LDLQEKALAAIKNLLQLRTTEALVLKDFCGLDTALERLRQQLQEVMLEEDQRDYAMDVEA 375
              +++E   AA++ LL+L   +         +D + E+LRQ L+E  ++        D+E 
Sbjct:   240 AEIRE---AALRGLLELSREKN---DGSSSIDKSDEKLRQLLEE-RIKGITLMSQEDLET 292

Query:   376 LRREVELI 383
             ++ E +L+
Sbjct:   293 VKEERQLV 300

GO:0005737 "cytoplasm" evidence=ISM;IDA

GO:0009408 "response to heat" evidence=RCA;IMP

GO:0009651 "response to salt stress" evidence=IMP

GO:0030544 "Hsp70 protein binding" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0006457 "protein folding" evidence=RCA

GO:0009644 "response to high light intensity" evidence=RCA

GO:0042542 "response to hydrogen peroxide" evidence=RCA

TAIR|locus:2185113 Fes1C "Fes1C" [Arabidopsis thaliana (taxid:3702)]

 Score = 198 (74.8 bits), Expect = 1.4e-13, P = 1.4e-13
 Identities = 84/288 (29%), Positives = 137/288 (47%)

Query:    80 DGMLQWAIAKLKETAQDVQRLSPSELK----KRQMEIKELMEKLKTPSDAQLIQIAIDDL 135
             DG+L+W+++    T    Q LS  + K      Q +  +++++LK  +  Q++Q     L
Sbjct:     9 DGLLKWSLSHSDGTRPTCQ-LSEEDRKWFAEAMQSQTVDVVKRLKEIT--QVLQTPQQVL 65

Query:   136 NNSTLSLEDSQRALQELLILVEPIDNANDXXXXXXXXXXXXXXNHPDTDIRKISAWILGK 195
                 ++ +D +  L EL   VE ID AND               + + +IR  SA ++  
Sbjct:    66 EAHEVTPQDIEGLLDELQEHVESIDMANDLHSVGGLVPLLGYLKNSNANIRAKSADVVST 125

Query:   196 ASQNNPLVQKQVLELGAL-SKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAG 254
               +NNP  Q+ V+E   L S L++    + +    +AL  +SSLIRNN  G   F +  G
Sbjct:   126 IVENNPRSQESVMEANGLESLLLRFTSDTDMHSRTQALGAISSLIRNNKPGITGFRIANG 185

Query:   255 DLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVV-DLTAS 313
                L+D L   S  +R  RKA++L+  L +   EN    +  +    F L  ++  L +S
Sbjct:   186 YSGLKDALETDS--VRFQRKALNLLHYLLQ---ENDSDSDIAI---EFGLHHLMMHLVSS 237

Query:   314 ADLDLQEKALAAIKNLLQLRTTEALVLKDFCGLDTAL--ERLRQQLQE 359
              D D++E   AA++ LL+L   +A      CG       ERLRQ L++
Sbjct:   238 FDADVRE---AALRGLLEL--VKARKDCSTCGSSIVKGDERLRQILKD 280

GO:0005737 "cytoplasm" evidence=ISM

TAIR|locus:2084365 Fes1B "Fes1B" [Arabidopsis thaliana (taxid:3702)]

 Score = 198 (74.8 bits), Expect = 2.5e-13, P = 2.5e-13
 Identities = 83/297 (27%), Positives = 138/297 (46%)

Query:    80 DGMLQWAIAKLKETAQDVQRLSPSE----LKKRQMEIKELMEKLKTPSDAQLIQIAIDDL 135
             DG+L+W+++   + A    R+S  +    ++  Q    + + ++K  S  Q++++    L
Sbjct:     9 DGLLKWSLSH-SDGASSSSRISEEDRQWFVEAMQAHTIDSISRMKVIS--QIMKMPEQVL 65

Query:   136 NNSTLSLEDSQRALQELLILVEPIDNANDXXXXXXXXXXXXXXNHPDTDIRKISAWILGK 195
                 ++ +D +  L EL   VE ID AND               + +  IR  SA +L  
Sbjct:    66 EAQGVTPDDLEGMLAELQEHVESIDLANDLHSIGGLVPLLSYLKNSNAKIRAKSADVLTT 125

Query:   196 ASQNNPLVQKQVLELGALSKLM-KMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAG 254
               QNNP  Q+ V+E      L+   +    +    KAL  +SSLIRNN  G   F +  G
Sbjct:   126 VVQNNPRSQQLVMEANGFEPLLTNFIADPDIRVRTKALGAISSLIRNNQPGITAFRLANG 185

Query:   255 DLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASA 314
                L+D L + +  +R  RKA++L+  L   Q  N    +  + RD  F + ++ L ++ 
Sbjct:   186 YAGLRDALVSDT--VRFQRKALNLLHYLL--QESNS---DCKIVRDLGFPRIMIHLASNQ 238

Query:   315 DLDLQEKALAAIKNLLQLRTTEALVLKDFCGLDTALERLRQQLQE------VMLEED 365
             D +++E AL   + LL+L   E++       LD     LRQ L+E      VM +ED
Sbjct:   239 DFEVREFAL---RGLLELAREESVR-----NLDRGDVNLRQLLEERTRRIIVMSDED 287

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0007623 "circadian rhythm" evidence=RCA

ASPGD|ASPL0000004813 AN6543 [Emericella nidulans (taxid:162425)]

 Score = 179 (68.1 bits), Expect = 3.3e-13, P = 3.3e-13
 Identities = 47/170 (27%), Positives = 81/170 (47%)

Query:    78 SIDGMLQWAIAKLKETAQDVQRLSPSELKKRQMEIKELMEKL-KTPSDAQLIQIAIDDLN 136
             +++ +L+W I     T Q     + +    R     E++  L   PS+A L++ A++ L 
Sbjct:     4 NMNNLLKWGIQNSTATQQTSDSNNNASQAPRSNITPEMLSALFGGPSEADLMKAAMEALR 63

Query:   137 NSTLSLEDSQRALQELLILVEPIDNANDXXXXXXXXXXXXXXNHPDTDIRKISAWILGKA 196
             +  + LE+   A      L+E IDNAN+               H + D+R+++AW +G A
Sbjct:    64 SDEVDLENKLIAFDNFEQLIESIDNANNLEPLGLWTPLVELLKHEEPDMRRMAAWCIGTA 123

Query:   197 SQNNPLVQKQVLELGALSKLMKMVKSSFVEEA-VKALYTVSSLIRNNLAG 245
              QNN   Q +++ + A+  L+ M     V     KA+Y +SS +RN   G
Sbjct:   124 VQNNEKAQDKLIVMNAIPTLVSMSTQDPVPAVRKKAVYALSSAVRNYQPG 173

GO:0005634 "nucleus" evidence=IEA

GO:0022626 "cytosolic ribosome" evidence=IEA

GO:0000774 "adenyl-nucleotide exchange factor activity" evidence=IEA

GO:0002181 "cytoplasmic translation" evidence=IEA

UNIPROTKB|Q32KV6 SIL1 "Nucleotide exchange factor SIL1" [Bos taurus (taxid:9913)]

 Score = 185 (70.2 bits), Expect = 1.5e-11, P = 1.5e-11
 Identities = 92/332 (27%), Positives = 156/332 (46%)

Query:    83 LQWAIAKLKETAQ------DVQRLSPSELKKRQME-IKELMEKLKT--PSDAQLIQIAID 133
             L+ A+AK KE A+      D +R +  +   R +E +K+  E+L     +D Q++   I+
Sbjct:   132 LKNALAKFKEGAEMENSKEDQERQAKVKRLFRPIEELKKDFEELNVVIETDMQIMVRLIN 191

Query:   134 DLNNSTLSLEDSQRALQELLILVEPIDNANDXXXXXXXXXXXXXXNHPDTDIRKISAWIL 193
               N+S+ SLE+   AL +L   V  +DNA D              N  +  +++ +A++L
Sbjct:   192 KFNSSSSSLEEKIAALFDLEYYVHQMDNAQDLLSFGGLQVVINGLNSTEPLVKEYAAFVL 251

Query:   194 GKASQNNPLVQKQVLELGALSKLMKMVKSSF-VEEAVKALYTVSSLIRNNLAGQEMFYVE 252
             G A  +NP VQ + +E GAL KL+ ++ +   +    KAL+ + SL+R+    Q+ F   
Sbjct:   252 GAAFSSNPKVQVEAIEGGALQKLLVILATEQPLTTKKKALFALCSLLRHFPYAQQQFLKL 311

Query:   253 AGDLMLQDILGNSSFEIRLHRKAVSLVGDLA--KCQLENMHKVEPPLFRDRFFLKSVVDL 310
              G  +L+ ++     E+ L  + V+L+ DL   K   E   ++   +   R      V L
Sbjct:   312 GGLQVLRSLVQEKGMEV-LAVRVVTLLYDLVTEKMFAEEDAELTWDMSPKRLQQYRQVHL 370

Query:   311 TASADLDLQEKALAAIK-NLLQLRTTEAL--VLKDFCGL-DTALERLRQQLQ-EVMLEED 365
               S    LQE+    I  +LL L   +A   VL+    L  T  +R  Q  Q    L   
Sbjct:   371 LPS----LQEQGWCEITAHLLALPEHDAREKVLQTLGALLATCRDRFHQDTQLHRTLGTL 426

Query:   366 QRDY-AMDVEALRREVELIFFRKLDDSGSNMI 396
             Q +Y A+    L+   +  +FR+L DS  +++
Sbjct:   427 QAEYQALAALELQEGEDEGYFRELLDSIDSLL 458

GO:0005788 "endoplasmic reticulum lumen" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

UNIPROTKB|Q9H173 SIL1 "Nucleotide exchange factor SIL1" [Homo sapiens (taxid:9606)]

 Score = 181 (68.8 bits), Expect = 4.3e-11, P = 4.3e-11
 Identities = 65/213 (30%), Positives = 108/213 (50%)

Query:    83 LQWAIAKLKETAQDVQRLSPSELKKRQMEIKEL---MEKLKTP---------SDAQLIQI 130
             L+ A+AK KE A+ ++  S  E K RQ E+K L   +E+LK           +D Q++  
Sbjct:   131 LKSALAKFKEGAE-ME--SSKEDKARQAEVKRLFRPIEELKKDFDELNVVIETDMQIMVR 187

Query:   131 AIDDLNNSTLSLEDSQRALQELLILVEPIDNANDXXXXXXXXXXXXXXNHPDTDIRKISA 190
              I+  N+S+ SLE+   AL +L   V  +DNA D              N  +  +++ +A
Sbjct:   188 LINKFNSSSSSLEEKIAALFDLEYYVHQMDNAQDLLSFGGLQVVINGLNSTEPLVKEYAA 247

Query:   191 WILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVK-ALYTVSSLIRNNLAGQEMF 249
             ++LG A  +NP VQ + +E GAL KL+ ++ +     A K  L+ + SL+R+    Q  F
Sbjct:   248 FVLGAAFSSNPKVQVEAIEGGALQKLLVILATEQPLTAKKKVLFALCSLLRHFPYAQRQF 307

Query:   250 YVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDL 282
                 G  +L+ ++     E+ L  + V+L+ DL
Sbjct:   308 LKLGGLQVLRTLVQEKGTEV-LAVRVVTLLYDL 339

GO:0005788 "endoplasmic reticulum lumen" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=NAS

GO:0006886 "intracellular protein transport" evidence=NAS

GO:0006457 "protein folding" evidence=NAS

GO:0051082 "unfolded protein binding" evidence=NAS

MGI|MGI:1932040 Sil1 "endoplasmic reticulum chaperone SIL1 homolog (S. cerevisiae)" [Mus musculus (taxid:10090)]

 Score = 180 (68.4 bits), Expect = 5.7e-11, P = 5.7e-11
 Identities = 95/335 (28%), Positives = 157/335 (46%)

Query:    83 LQWAIAKLKETAQDVQRLSPSELKKRQMEIKEL---MEKLKTP---------SDAQLIQI 130
             L+ A+AK KE  +     S  EL  RQ  +K+L   +E+LK           +D Q++  
Sbjct:   135 LKSALAKFKEGTE--MENSKDELA-RQATVKQLFRPIEELKKEFDELNVVLETDMQIMVR 191

Query:   131 AIDDLNNSTLSLEDSQRALQELLILVEPIDNANDXXXXXXXXXXXXXXNHPDTDIRKISA 190
              I+  N+S+ SLE+   AL +L   V  +DNA D              N  +  +++ +A
Sbjct:   192 LINKFNSSSSSLEEKVAALFDLEYYVHQMDNAQDLLSFGGLQVVINGLNSTEPLVKEYAA 251

Query:   191 WILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVK-ALYTVSSLIRNNLAGQEMF 249
             ++LG A  +NP VQ + +E GAL KL+ ++ ++    A K  L+ + SL+R+    Q+ F
Sbjct:   252 FVLGAAFSSNPKVQVEAIEGGALQKLLVILATNQPLPAKKKVLFALCSLLRHFPYAQQQF 311

Query:   250 YVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMH-KVEPPLFRDRFFLKSVV 308
                 G  +L+ ++   S ++ L  + V+L+ DL     E M  + E  L +D    K   
Sbjct:   312 LKLGGLQVLRSLVQEKSAKV-LAVRVVTLLYDLVT---EKMFAEEEAELTQDSSPEKLQQ 367

Query:   309 DLTASADLDLQEKALAAIK-NLLQLRTTEAL--VLKDFCGL-DTALERLRQQLQ-EVMLE 363
                      LQE+    I   LL L   +A   VL+    L  T  +R RQ LQ    L 
Sbjct:   368 YRQVQLLPGLQEQGWCEITAQLLALPEHDAREKVLQTLGALLTTCRDRYRQDLQLSRTLG 427

Query:   364 EDQRDY-AMDVEALRREVELIFFRKLDDSGSNMIR 397
               Q +Y A+    L+   +  +FR+L  S +++++
Sbjct:   428 RLQAEYQALASLELQEGEDDGYFRELLASINSLMK 462

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0006810 "transport" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

RGD|735103 Sil1 "SIL1 homolog, endoplasmic reticulum chaperone (S. cerevisiae)" [Rattus norvegicus (taxid:10116)]

 Score = 174 (66.3 bits), Expect = 2.7e-10, P = 2.7e-10
 Identities = 63/213 (29%), Positives = 107/213 (50%)

Query:    83 LQWAIAKLKETAQDVQRLSPSELKKRQMEIKEL---MEKLKTP---------SDAQLIQI 130
             L+ A+AK KE  +     S  EL  RQ  +K+L   +E+LK           +D Q++  
Sbjct:   135 LKSALAKFKEGTE--MENSKDELA-RQATVKQLFRPIEELKKEFDELNVVLETDMQIMVR 191

Query:   131 AIDDLNNSTLSLEDSQRALQELLILVEPIDNANDXXXXXXXXXXXXXXNHPDTDIRKISA 190
              I+  N+S+ SLE+   AL +L   V  +DNA D              N  +  +++ +A
Sbjct:   192 LINKFNSSSSSLEEKVAALFDLEYYVHQMDNAQDLLSFGGLQVVINGLNSTEPLVKEYAA 251

Query:   191 WILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVK-ALYTVSSLIRNNLAGQEMF 249
             ++LG A  +NP VQ + +E GAL KL+ ++ +     A K  L+ + SL+R+    Q+ F
Sbjct:   252 FVLGAAFSSNPKVQVEAIEGGALQKLLVILATEQPLPAKKKVLFALCSLLRHFPYAQQQF 311

Query:   250 YVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDL 282
                 G  +L+ ++   S ++ L  + V+L+ DL
Sbjct:   312 LKLGGLQVLRSLVQEKSAKV-LAVRVVTLLYDL 343

GO:0005783 "endoplasmic reticulum" evidence=ISO

GO:0005788 "endoplasmic reticulum lumen" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	397
cd00020	120	cd00020, ARM, Armadillo/beta-catenin-like repeats	1e-04
cd00020	120	cd00020, ARM, Armadillo/beta-catenin-like repeats	2e-04
pfam08609	87	pfam08609, Fes1, Nucleotide exchange factor Fes1	4e-04

>gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats

 Score = 41.1 bits (97), Expect = 1e-04
 Identities = 26/99 (26%), Positives = 42/99 (42%), Gaps = 2/99 (2%)

Query: 142 LEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNP 201
             ++  AL  L       DN   + + GGL  LV  L   D ++ K + W L   +    
Sbjct: 24  QREAAWALSNLSAGNN--DNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPE 81

Query: 202 LVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIR 240
             +  VLE G + KL+ ++ SS  +    A   +S+L  
Sbjct: 82  DNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLAS 120

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120

>gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats

 Score = 40.4 bits (95), Expect = 2e-04
 Identities = 23/77 (29%), Positives = 42/77 (54%), Gaps = 3/77 (3%)

Query: 164 DLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSS 223
            + + GGL  LV  L+  D ++++ +AW L   S  N    + V+E G L  L++++KS 
Sbjct: 2   AVIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSE 61

Query: 224 ---FVEEAVKALYTVSS 237
               V+ A+ AL  +++
Sbjct: 62  DEEVVKAALWALRNLAA 78

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120

>gnl|CDD|219931 pfam08609, Fes1, Nucleotide exchange factor Fes1

 Score = 38.5 bits (90), Expect = 4e-04
 Identities = 26/89 (29%), Positives = 49/89 (55%), Gaps = 4/89 (4%)

Query: 77  SSIDGMLQWAIAKLKETAQDVQRLSPSELKKRQMEIKELMEKLKTPSDAQLIQIAIDDLN 136
            +++ +L+W+I    E +       PS  + R ++ + L +    PSDA L++ A++ + 
Sbjct: 3   KNMNNLLKWSI----ENSTGAGSSPPSIPQPRSLDPEMLDQLFGGPSDADLMKAAMEVIT 58

Query: 137 NSTLSLEDSQRALQELLILVEPIDNANDL 165
           +  ++LED   A     +L+E IDNAN+L
Sbjct: 59  DEEVTLEDKVIAFDNFEMLIENIDNANNL 87

Fes1 is a cytosolic homologue of Sls1, an ER protein which has nucleotide exchange factor activity. Fes1 in yeast has been shown to bind to the molecular chaperone Hsp70 and has adenyl-nucleotide exchange factor activity. Length = 87

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	397
KOG2160	342	consensus Armadillo/beta-catenin-like repeat-conta	100.0
KOG0166	514	consensus Karyopherin (importin) alpha [Intracellu	99.82
KOG0166	514	consensus Karyopherin (importin) alpha [Intracellu	99.78
PLN03200	2102	cellulose synthase-interactive protein; Provisiona	99.77
PLN03200	2102	cellulose synthase-interactive protein; Provisiona	99.76
COG5064	526	SRP1 Karyopherin (importin) alpha [Intracellular t	99.75
PF08609	92	Fes1: Nucleotide exchange factor Fes1; InterPro: I	99.73
COG5064	526	SRP1 Karyopherin (importin) alpha [Intracellular t	99.69
KOG4224	550	consensus Armadillo repeat protein VAC8 required f	99.68
KOG4224	550	consensus Armadillo repeat protein VAC8 required f	99.62
cd00020	120	ARM Armadillo/beta-catenin-like repeats. An approx	99.55
KOG1048	717	consensus Neural adherens junction protein Plakoph	99.44
cd00020	120	ARM Armadillo/beta-catenin-like repeats. An approx	99.37
PF05804	708	KAP: Kinesin-associated protein (KAP)	99.27
PF10508	503	Proteasom_PSMB: Proteasome non-ATPase 26S subunit;	99.22
PF04826	254	Arm_2: Armadillo-like; InterPro: IPR006911 This en	99.21
KOG2160	342	consensus Armadillo/beta-catenin-like repeat-conta	99.13
PF03224	312	V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004	99.11
PF04826	254	Arm_2: Armadillo-like; InterPro: IPR006911 This en	98.99
KOG4199	461	consensus Uncharacterized conserved protein [Funct	98.98
KOG4199	461	consensus Uncharacterized conserved protein [Funct	98.96
PF10508	503	Proteasom_PSMB: Proteasome non-ATPase 26S subunit;	98.92
KOG1293	678	consensus Proteins containing armadillo/beta-caten	98.89
cd00256	429	VATPase_H VATPase_H, regulatory vacuolar ATP synth	98.82
PF05804	708	KAP: Kinesin-associated protein (KAP)	98.77
KOG0168	1051	consensus Putative ubiquitin fusion degradation pr	98.71
KOG2122	2195	consensus Beta-catenin-binding protein APC, contai	98.37
PRK09687	280	putative lyase; Provisional	98.27
PF08045	257	CDC14: Cell division control protein 14, SIN compo	98.26
KOG0946	970	consensus ER-Golgi vesicle-tethering protein p115	98.26
KOG1048	717	consensus Neural adherens junction protein Plakoph	98.23
PF12348	228	CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi	98.23
PF00514	41	Arm: Armadillo/beta-catenin-like repeat; InterPro:	98.19
PRK09687	280	putative lyase; Provisional	98.19
PF13513	55	HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O	98.09
KOG2759	442	consensus Vacuolar H+-ATPase V1 sector, subunit H	98.09
PF13646	88	HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I	98.02
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	97.97
KOG4500	604	consensus Rho/Rac GTPase guanine nucleotide exchan	97.92
PRK13800	897	putative oxidoreductase/HEAT repeat-containing pro	97.91
PRK13800	897	putative oxidoreductase/HEAT repeat-containing pro	97.88
PF09759	102	Atx10homo_assoc: Spinocerebellar ataxia type 10 pr	97.88
PF00514	41	Arm: Armadillo/beta-catenin-like repeat; InterPro:	97.86
KOG4500	604	consensus Rho/Rac GTPase guanine nucleotide exchan	97.84
KOG2171	1075	consensus Karyopherin (importin) beta 3 [Nuclear s	97.83
PF11698	119	V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011	97.82
PF03224	312	V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004	97.81
PF01602	526	Adaptin_N: Adaptin N terminal region; InterPro: IP	97.72
PF01602	526	Adaptin_N: Adaptin N terminal region; InterPro: IP	97.71
PF05536	543	Neurochondrin: Neurochondrin	97.7
KOG0168	1051	consensus Putative ubiquitin fusion degradation pr	97.69
KOG3678	832	consensus SARM protein (with sterile alpha and arm	97.61
KOG0946	970	consensus ER-Golgi vesicle-tethering protein p115	97.61
KOG2122	2195	consensus Beta-catenin-binding protein APC, contai	97.56
KOG1293	678	consensus Proteins containing armadillo/beta-caten	97.5
smart00185	41	ARM Armadillo/beta-catenin-like repeats. Approx. 4	97.38
cd00256	429	VATPase_H VATPase_H, regulatory vacuolar ATP synth	97.35
KOG2171	1075	consensus Karyopherin (importin) beta 3 [Nuclear s	97.35
PTZ00429	746	beta-adaptin; Provisional	97.33
KOG2759	442	consensus Vacuolar H+-ATPase V1 sector, subunit H	97.33
COG5369	743	Uncharacterized conserved protein [Function unknow	97.31
smart00185	41	ARM Armadillo/beta-catenin-like repeats. Approx. 4	97.22
PF13646	88	HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I	97.2
PF09759	102	Atx10homo_assoc: Spinocerebellar ataxia type 10 pr	97.09
PF14664	371	RICTOR_N: Rapamycin-insensitive companion of mTOR,	97.09
KOG4646	173	consensus Uncharacterized conserved protein, conta	97.07
PTZ00429	746	beta-adaptin; Provisional	97.07
KOG1222	791	consensus Kinesin associated protein KAP [Intracel	96.99
TIGR02270	410	conserved hypothetical protein. Members are found	96.91
KOG1789	2235	consensus Endocytosis protein RME-8, contains DnaJ	96.89
KOG4646	173	consensus Uncharacterized conserved protein, conta	96.88
KOG4413	524	consensus 26S proteasome regulatory complex, subun	96.82
PF05536	543	Neurochondrin: Neurochondrin	96.74
PF11841	160	DUF3361: Domain of unknown function (DUF3361)	96.72
PF11698	119	V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011	96.71
PF06371	187	Drf_GBD: Diaphanous GTPase-binding Domain; InterPr	96.63
KOG0213	1172	consensus Splicing factor 3b, subunit 1 [RNA proce	96.62
COG5096	757	Vesicle coat complex, various subunits [Intracellu	96.6
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	96.6
PF05004	309	IFRD: Interferon-related developmental regulator (	96.5
KOG3678	832	consensus SARM protein (with sterile alpha and arm	96.47
COG5369	743	Uncharacterized conserved protein [Function unknow	96.38
TIGR02270	410	conserved hypothetical protein. Members are found	96.31
PF13513	55	HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O	96.3
PF14664	371	RICTOR_N: Rapamycin-insensitive companion of mTOR,	96.25
KOG1241	859	consensus Karyopherin (importin) beta 1 [Nuclear s	96.15
KOG1789	2235	consensus Endocytosis protein RME-8, contains DnaJ	96.13
COG5181	975	HSH155 U2 snRNP spliceosome subunit [RNA processin	96.13
PF11841	160	DUF3361: Domain of unknown function (DUF3361)	96.12
COG1413	335	FOG: HEAT repeat [Energy production and conversion	96.12
KOG1222	791	consensus Kinesin associated protein KAP [Intracel	96.09
PF04078	262	Rcd1: Cell differentiation family, Rcd1-like ; Int	96.03
KOG1824	1233	consensus TATA-binding protein-interacting protein	95.95
PF02985	31	HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re	95.93
PF12348	228	CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi	95.9
KOG2023	885	consensus Nuclear transport receptor Karyopherin-b	95.82
PF10165	446	Ric8: Guanine nucleotide exchange factor synembryn	95.81
PF05918	556	API5: Apoptosis inhibitory protein 5 (API5); Inter	95.77
KOG1991	1010	consensus Nuclear transport receptor RANBP7/RANBP8	95.56
KOG2973	353	consensus Uncharacterized conserved protein [Funct	95.53
COG5096	757	Vesicle coat complex, various subunits [Intracellu	95.45
KOG2259	823	consensus Uncharacterized conserved protein [Funct	95.3
PF08045	257	CDC14: Cell division control protein 14, SIN compo	95.29
KOG1824	1233	consensus TATA-binding protein-interacting protein	95.27
PF12717	178	Cnd1: non-SMC mitotic condensation complex subunit	95.25
PF04078	262	Rcd1: Cell differentiation family, Rcd1-like ; Int	95.19
KOG2734	536	consensus Uncharacterized conserved protein [Funct	95.18
KOG1242	569	consensus Protein containing adaptin N-terminal re	95.08
cd03561	133	VHS VHS domain family; The VHS domain is present i	95.01
PF12755	97	Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region	94.92
KOG2023	885	consensus Nuclear transport receptor Karyopherin-b	94.92
PF02985	31	HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re	94.85
COG1413	335	FOG: HEAT repeat [Energy production and conversion	94.78
KOG1062	866	consensus Vesicle coat complex AP-1, gamma subunit	94.74
KOG1241	859	consensus Karyopherin (importin) beta 1 [Nuclear s	94.72
KOG1061	734	consensus Vesicle coat complex AP-1/AP-2/AP-4, bet	94.71
PF08569	335	Mo25: Mo25-like; InterPro: IPR013878 Mo25-like pro	94.62
PF12755	97	Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region	94.59
smart00288	133	VHS Domain present in VPS-27, Hrs and STAM. Unpubl	94.45
PF12717	178	Cnd1: non-SMC mitotic condensation complex subunit	94.43
KOG3036	293	consensus Protein involved in cell differentiation	94.4
KOG1059	877	consensus Vesicle coat complex AP-3, delta subunit	94.34
PF12719	298	Cnd3: Nuclear condensing complex subunits, C-term	94.23
PF12460	415	MMS19_C: RNAPII transcription regulator C-terminal	94.2
KOG3036	293	consensus Protein involved in cell differentiation	94.17
KOG4413	524	consensus 26S proteasome regulatory complex, subun	94.1
PF06025	379	DUF913: Domain of Unknown Function (DUF913); Inter	94.09
COG5231	432	VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Ene	94.06
PF06371	187	Drf_GBD: Diaphanous GTPase-binding Domain; InterPr	93.88
KOG1062	866	consensus Vesicle coat complex AP-1, gamma subunit	93.79
cd03569	142	VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p s	93.69
PF10165	446	Ric8: Guanine nucleotide exchange factor synembryn	93.5
PF13251	182	DUF4042: Domain of unknown function (DUF4042)	93.48
PF14668	73	RICTOR_V: Rapamycin-insensitive companion of mTOR,	93.48
cd03568	144	VHS_STAM VHS domain family, STAM subfamily; member	93.13
KOG2734	536	consensus Uncharacterized conserved protein [Funct	93.06
KOG1058	948	consensus Vesicle coat complex COPI, beta subunit	92.96
KOG0567	289	consensus HEAT repeat-containing protein [General	92.9
PF12031	257	DUF3518: Domain of unknown function (DUF3518); Int	92.8
PF11701	157	UNC45-central: Myosin-binding striated muscle asse	92.77
KOG2956	516	consensus CLIP-associating protein [General functi	92.73
KOG0212	675	consensus Uncharacterized conserved protein [Funct	92.68
cd03567	139	VHS_GGA VHS domain family, GGA subfamily; GGA (Gol	92.65
KOG2025	892	consensus Chromosome condensation complex Condensi	92.51
KOG1059	877	consensus Vesicle coat complex AP-3, delta subunit	92.31
KOG1820	815	consensus Microtubule-associated protein [Cytoskel	91.46
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	91.36
KOG1058	948	consensus Vesicle coat complex COPI, beta subunit	91.24
KOG2999	713	consensus Regulator of Rac1, required for phagocyt	91.15
KOG1242	569	consensus Protein containing adaptin N-terminal re	90.96
KOG1077	938	consensus Vesicle coat complex AP-2, alpha subunit	90.92
KOG0301	745	consensus Phospholipase A2-activating protein (con	90.65
PF00790	140	VHS: VHS domain; InterPro: IPR002014 The VHS domai	90.46
KOG0212	675	consensus Uncharacterized conserved protein [Funct	90.32
KOG1248	1176	consensus Uncharacterized conserved protein [Funct	90.3
COG5181	975	HSH155 U2 snRNP spliceosome subunit [RNA processin	90.21
PF10363	92	DUF2435: Protein of unknown function (DUF2435)	90.06
KOG1020	1692	consensus Sister chromatid cohesion protein SCC2/N	89.82
KOG2973	353	consensus Uncharacterized conserved protein [Funct	89.82
KOG1248	1176	consensus Uncharacterized conserved protein [Funct	89.54
KOG1061	734	consensus Vesicle coat complex AP-1/AP-2/AP-4, bet	89.45
PF12460	415	MMS19_C: RNAPII transcription regulator C-terminal	89.44
PF11701	157	UNC45-central: Myosin-binding striated muscle asse	89.33
KOG2999	713	consensus Regulator of Rac1, required for phagocyt	88.76
PF06025	379	DUF913: Domain of Unknown Function (DUF913); Inter	88.7
PF13764	802	E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4	88.62
PF05918	556	API5: Apoptosis inhibitory protein 5 (API5); Inter	88.21
PF08167	165	RIX1: rRNA processing/ribosome biogenesis	87.74
PF04869	312	Uso1_p115_head: Uso1 / p115 like vesicle tethering	87.52
KOG0213	1172	consensus Splicing factor 3b, subunit 1 [RNA proce	87.39
KOG1060	968	consensus Vesicle coat complex AP-3, beta subunit	87.22
KOG1788	2799	consensus Uncharacterized conserved protein [Funct	87.1
PF08167	165	RIX1: rRNA processing/ribosome biogenesis	87.03
COG5209	315	RCD1 Uncharacterized protein involved in cell diff	87.0
cd03567	139	VHS_GGA VHS domain family, GGA subfamily; GGA (Gol	86.96
PF01365	207	RYDR_ITPR: RIH domain; InterPro: IPR000699 Ryanodi	86.71
KOG4535	728	consensus HEAT and armadillo repeat-containing pro	86.02
PF07814	361	WAPL: Wings apart-like protein regulation of heter	85.84
cd03565	141	VHS_Tom1 VHS domain family, Tom1 subfamily; The VH	85.78
PF01347	618	Vitellogenin_N: Lipoprotein amino terminal region;	85.41
smart00638	574	LPD_N Lipoprotein N-terminal Domain.	85.29
KOG2676	478	consensus Uncharacterized conserved protein [Funct	85.25
KOG2259	823	consensus Uncharacterized conserved protein [Funct	85.13
COG5209	315	RCD1 Uncharacterized protein involved in cell diff	85.12
smart00638	574	LPD_N Lipoprotein N-terminal Domain.	85.05
KOG1967	1030	consensus DNA repair/transcription protein Mms19 [	85.03
COG5231	432	VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Ene	84.85
cd03561	133	VHS VHS domain family; The VHS domain is present i	84.83
KOG0414	1251	consensus Chromosome condensation complex Condensi	84.63
KOG2274	1005	consensus Predicted importin 9 [Intracellular traf	84.58
PF12830	187	Nipped-B_C: Sister chromatid cohesion C-terminus	84.24
KOG2032	533	consensus Uncharacterized conserved protein [Funct	84.13
PF14726	98	RTTN_N: Rotatin, an armadillo repeat protein, cent	84.12
KOG4653	982	consensus Uncharacterized conserved protein [Funct	84.07
KOG1991	1010	consensus Nuclear transport receptor RANBP7/RANBP8	83.82
PF11707	330	Npa1: Ribosome 60S biogenesis N-terminal; InterPro	83.45
KOG4535	728	consensus HEAT and armadillo repeat-containing pro	83.3
PF11791	154	Aconitase_B_N: Aconitate B N-terminal domain; Inte	83.23
PF01347	618	Vitellogenin_N: Lipoprotein amino terminal region;	83.11
PF11865	160	DUF3385: Domain of unknown function (DUF3385); Int	83.05
PF12719	298	Cnd3: Nuclear condensing complex subunits, C-term	83.01
KOG1943	1133	consensus Beta-tubulin folding cofactor D [Posttra	82.66
PF10363	92	DUF2435: Protein of unknown function (DUF2435)	82.2
COG5215	858	KAP95 Karyopherin (importin) beta [Intracellular t	81.92
PF08569	335	Mo25: Mo25-like; InterPro: IPR013878 Mo25-like pro	81.74
KOG2062	929	consensus 26S proteasome regulatory complex, subun	81.7
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	81.53
cd03569	142	VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p s	81.38
COG5218	885	YCG1 Chromosome condensation complex Condensin, su	80.66

>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=2.5e-44  Score=351.27  Aligned_cols=325  Identities=31%  Similarity=0.392  Sum_probs=270.5

Q ss_pred             CCcccccccccccccCCccccccCcchhhhhhccCCCCCCCCCCChHHHHHHHHHhccccccccCCCCHHHHHHhHHHHH
Q 015951           34 SSSAGLFWSTAKEDEDQPRKAERNDDSTAAAIVNDHDELDGGFSSIDGMLQWAIAKLKETAQDVQRLSPSELKKRQMEIK  113 (397)
Q Consensus        34 ~~~~~~~~~t~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~glLkwsi~~~~~~~~~~~~~s~e~l~~r~~~L~  113 (397)
                      +++++++.+||..+.++..+.+-          +..++....+  ..|++.|++.  ++             +++++|+.
T Consensus         6 ~~~~~~~~~~gl~~ws~~~~~~~----------~~~~~~~~~~--~~~~~~~~~~--~~-------------ke~~k~~~   58 (342)
T KOG2160|consen    6 GSHVRPPNQEGLLEWSLQLSQSL----------GSRPDIQISG--DLGMAEAKLK--DE-------------KEDRKWLQ   58 (342)
T ss_pred             cccccCccccchhhccccccccc----------CCCchhhhcc--chhhhhhhcc--Cc-------------ccchHHHH
Confidence            56778888888888887665111          1011111111  3466666655  11             24677777


Q ss_pred             HHHHhcC---------CCCHHHHHHH-HHHHhhCCCCCHHHHHHHHHHHHhccCCCCchhHHHhcCCHHHHHHhcCCCCH
Q 015951          114 ELMEKLK---------TPSDAQLIQI-AIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDT  183 (397)
Q Consensus       114 ea~~~~~---------~~~d~~lmk~-~i~~L~~~~~s~e~k~~AL~~L~~Lve~iDnA~~~~~lGGl~~Li~lL~s~~~  183 (397)
                      ++|...+         ++.....|+. ++..+++++.++++|+.||++|+++||+||||++|+++|||++++.+|+++++
T Consensus        59 e~~~~~~e~~k~~~~~~~~~~~~~~~~~~~~~~~~s~~le~ke~ald~Le~lve~iDnAndl~~~ggl~~ll~~l~~~~~  138 (342)
T KOG2160|consen   59 ELMQAHTEDQKDFVEDMKVISDVMSMIPIVILNSSSVDLEDKEDALDNLEELVEDIDNANDLISLGGLVPLLGYLENSDA  138 (342)
T ss_pred             HHHHHhhhhhhhhcccchhHHHHHHhhhhhccCcccCCHHHHHHHHHHHHHHHHhhhhHHhHhhccCHHHHHHHhcCCcH
Confidence            7775542         2233445555 67778889999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhcCChHHHHHHHHcCcHHHHHHhhcCCC-HHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhh
Q 015951          184 DIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSF-VEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDIL  262 (397)
Q Consensus       184 ~ir~~Aa~vLg~~aqNNp~~Q~~vl~~g~lp~Ll~LL~s~~-~~v~~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL  262 (397)
                      ++|+.|+|+||+++||||++|+.+++.|++++|+.++++++ ..++.||+||||+++|+|++++..|...+|+.+|..++
T Consensus       139 ~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl  218 (342)
T KOG2160|consen  139 ELRELAARVIGTAVQNNPKSQEQVIELGALSKLLKILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVL  218 (342)
T ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHHHHHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHH
Confidence            99999999999999999999999999999999999999765 46899999999999999999999999999999999999


Q ss_pred             cCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHHhCCcHHHHHHhccCCChHHHHHHHHHHHHHhcCChHHHHHHHh
Q 015951          263 GNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLRTTEALVLKD  342 (397)
Q Consensus       263 ~s~~~d~klr~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~dv~E~aL~aL~~L~~~~~~~r~~~~~  342 (397)
                      ++++.++++|+||++++++|..+     +......+...|+...+..+..+.+.++.|.++.++..+...-......+..
T Consensus       219 ~~~~~~~~lkrK~~~Ll~~Ll~~-----~~s~~d~~~~~~f~~~~~~l~~~l~~~~~e~~l~~~l~~l~~~~~~~~~~~~  293 (342)
T KOG2160|consen  219 QSNNTSVKLKRKALFLLSLLLQE-----DKSDEDIASSLGFQRVLENLISSLDFEVNEAALTALLSLLSELSTRKELFVS  293 (342)
T ss_pred             HcCCcchHHHHHHHHHHHHHHHh-----hhhhhhHHHHhhhhHHHHHHhhccchhhhHHHHHHHHHHHHHHhhcchhhhh
Confidence            99878999999999999999974     4455557788899999999999999999999999999988765433335666


Q ss_pred             cCChHHHHHHHHHHhHHhhhhhhhhhhHHhHHHHHHHHHHHHHHHhhh
Q 015951          343 FCGLDTALERLRQQLQEVMLEEDQRDYAMDVEALRREVELIFFRKLDD  390 (397)
Q Consensus       343 ~~gL~~~L~~Lr~~~~~l~~~e~~~~~~~~l~~~~~e~~~~~~~~~~~  390 (397)
                      .++++..++++.+.+.+.+..+++..|++++...+.|+..+|+++++.
T Consensus       294 ~~~l~e~l~~~~q~~~~~~~~~~e~~l~~~l~~~~~e~~~~~~~~~~~  341 (342)
T KOG2160|consen  294 LLNLEELLKSLIQIISDHAALEEERQLVNSLWEICGEVPSILRKLLGS  341 (342)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHhcc
Confidence            788999999999999988888889999999999999999999999975

>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.82  E-value=3.5e-19  Score=183.17  Aligned_cols=230  Identities=17%  Similarity=0.216  Sum_probs=198.5

Q ss_pred             CCHHHHHHHHHHHhhC--CCCCHHHHHHHHHHHHhccC-CCCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhc
Q 015951          122 PSDAQLIQIAIDDLNN--STLSLEDSQRALQELLILVE-PIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQ  198 (397)
Q Consensus       122 ~~d~~lmk~~i~~L~~--~~~s~e~k~~AL~~L~~Lve-~iDnA~~~~~lGGl~~Li~lL~s~~~~ir~~Aa~vLg~~aq  198 (397)
                      +.+++.++.++..|..  .+.+++....|+..+.||.. ..+.-...++.|++|.|+.+|.++++.++..|.++||+++.
T Consensus       229 ~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIvt  308 (514)
T KOG0166|consen  229 SPPFDVVAPILPALLRLLHSTDEEVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNIVT  308 (514)
T ss_pred             CCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHHHcCCCcccccHHHhhccceee
Confidence            4456788887777644  23467888899999999994 56677889999999999999999999999999999999999


Q ss_pred             CChHHHHHHHHcCcHHHHHHhhcCCC-HHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHH
Q 015951          199 NNPLVQKQVLELGALSKLMKMVKSSF-VEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVS  277 (397)
Q Consensus       199 NNp~~Q~~vl~~g~lp~Ll~LL~s~~-~~v~~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klr~kA~~  277 (397)
                      .+....+.++..|++|.|..++.... ..++..|+|+||||+.+++...++++++|-++.|+++|++.  +.++|+.|+|
T Consensus       309 G~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iSNItAG~~~qiqaVida~l~p~Li~~l~~~--ef~~rKEAaw  386 (514)
T KOG0166|consen  309 GSDEQTQVVINSGALPVLSNLLSSSPKESIKKEACWTISNITAGNQEQIQAVIDANLIPVLINLLQTA--EFDIRKEAAW  386 (514)
T ss_pred             ccHHHHHHHHhcChHHHHHHHhccCcchhHHHHHHHHHHHhhcCCHHHHHHHHHcccHHHHHHHHhcc--chHHHHHHHH
Confidence            99999999999999999999999544 55888899999999999999999999999999999999986  7899999999


Q ss_pred             HHHHHhhchhccCCCCcchhHHhCCcHHHHHHhccCCChHHHHHHHHHHHHHhcCChHHH--------HHHHhcCChHHH
Q 015951          278 LVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLRTTEA--------LVLKDFCGLDTA  349 (397)
Q Consensus       278 lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~dv~E~aL~aL~~L~~~~~~~r--------~~~~~~~gL~~~  349 (397)
                      +|+|++.+    +.++...+++++|+++.++++|...|.++...++.++.++....+...        ..+.+++|+ ..
T Consensus       387 aIsN~ts~----g~~~qi~yLv~~giI~plcdlL~~~D~~ii~v~Ld~l~nil~~~e~~~~~~~n~~~~~IEe~ggl-dk  461 (514)
T KOG0166|consen  387 AISNLTSS----GTPEQIKYLVEQGIIKPLCDLLTCPDVKIILVALDGLENILKVGEAEKNRGTNPLAIMIEEAGGL-DK  461 (514)
T ss_pred             HHHhhccc----CCHHHHHHHHHcCCchhhhhcccCCChHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHccCh-hH
Confidence            99999984    568888999999999999999999999999999999999998765433        234544444 55


Q ss_pred             HHHHHHHhH
Q 015951          350 LERLRQQLQ  358 (397)
Q Consensus       350 L~~Lr~~~~  358 (397)
                      ++.|+++-+
T Consensus       462 iE~LQ~hen  470 (514)
T KOG0166|consen  462 IENLQSHEN  470 (514)
T ss_pred             HHHhhcccc
Confidence            677877654

>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.78  E-value=3.1e-18  Score=176.19  Aligned_cols=223  Identities=18%  Similarity=0.216  Sum_probs=189.3

Q ss_pred             HHHHHHHhhCCCCCHHHHHHHHHHHHhccC-CCCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHHHHH
Q 015951          128 IQIAIDDLNNSTLSLEDSQRALQELLILVE-PIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQ  206 (397)
Q Consensus       128 mk~~i~~L~~~~~s~e~k~~AL~~L~~Lve-~iDnA~~~~~lGGl~~Li~lL~s~~~~ir~~Aa~vLg~~aqNNp~~Q~~  206 (397)
                      +..+++.|.... ++.-+..|...|.++.. ..+..+.++..|.+|.++.+|.++++.|++.|.|+||+++...|.+++.
T Consensus       111 v~~lV~~l~~~~-~~~lq~eAAWaLTnIAsgtse~T~~vv~agavp~fi~Ll~s~~~~v~eQavWALgNIagds~~~Rd~  189 (514)
T KOG0166|consen  111 VPRLVEFLSRDD-NPTLQFEAAWALTNIASGTSEQTKVVVDAGAVPIFIQLLSSPSADVREQAVWALGNIAGDSPDCRDY  189 (514)
T ss_pred             HHHHHHHHccCC-ChhHHHHHHHHHHHHhcCchhhccccccCCchHHHHHHhcCCcHHHHHHHHHHHhccccCChHHHHH
Confidence            445666675433 45678888899988774 5678889999999999999999999999999999999999999999999


Q ss_pred             HHHcCcHHHHHHhhcCCCH-HHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhc
Q 015951          207 VLELGALSKLMKMVKSSFV-EEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKC  285 (397)
Q Consensus       207 vl~~g~lp~Ll~LL~s~~~-~v~~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klr~kA~~lL~~L~~~  285 (397)
                      +++.|++++|+.++..... ...+.++|+||+++|+..|....-.-...++.|..++++.  |..+...|+|+|++|+. 
T Consensus       190 vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P~P~~~~v~~iLp~L~~ll~~~--D~~Vl~Da~WAlsyLsd-  266 (514)
T KOG0166|consen  190 VLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNPSPPFDVVAPILPALLRLLHST--DEEVLTDACWALSYLTD-  266 (514)
T ss_pred             HHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHHhc-
Confidence            9999999999999998765 6789999999999999744333333367899999999986  77789999999999995 


Q ss_pred             hhccCCCCcchhHHhCCcHHHHHHhccCCChHHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHHHHHhH
Q 015951          286 QLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLRTTEALVLKDFCGLDTALERLRQQLQ  358 (397)
Q Consensus       286 ~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~dv~E~aL~aL~~L~~~~~~~r~~~~~~~gL~~~L~~Lr~~~~  358 (397)
                          +.++..+.+++.|+++.|+++|.+.+..++-.|++++++++..++...+.+-+.+.|..+...|.+.+.
T Consensus       267 ----g~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIvtG~d~QTq~vi~~~~L~~l~~ll~~s~~  335 (514)
T KOG0166|consen  267 ----GSNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNIVTGSDEQTQVVINSGALPVLSNLLSSSPK  335 (514)
T ss_pred             ----CChHHHHHHHHccchHHHHHHHcCCCcccccHHHhhccceeeccHHHHHHHHhcChHHHHHHHhccCcc
Confidence                467888899999999999999999999999999999999999998888888866666666665554433

>PLN03200 cellulose synthase-interactive protein; Provisional

Probab=99.77  E-value=3.8e-17  Score=189.00  Aligned_cols=221  Identities=19%  Similarity=0.167  Sum_probs=178.9

Q ss_pred             HHHHHHhhCCCCCHHHHHHHHHHHHhccCCC-CchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHHHHHH
Q 015951          129 QIAIDDLNNSTLSLEDSQRALQELLILVEPI-DNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQV  207 (397)
Q Consensus       129 k~~i~~L~~~~~s~e~k~~AL~~L~~Lve~i-DnA~~~~~lGGl~~Li~lL~s~~~~ir~~Aa~vLg~~aqNNp~~Q~~v  207 (397)
                      ..+++.|.++  +.+.+..|+..|..+.... ++...+...||+|+|+++|.++++.+|..|+|+|++++.+++.+|..+
T Consensus       449 p~LV~LL~s~--s~~iQ~~A~~~L~nLa~~ndenr~aIieaGaIP~LV~LL~s~~~~iqeeAawAL~NLa~~~~qir~iV  526 (2102)
T PLN03200        449 QLLISLLGLS--SEQQQEYAVALLAILTDEVDESKWAITAAGGIPPLVQLLETGSQKAKEDSATVLWNLCCHSEDIRACV  526 (2102)
T ss_pred             HHHHHHHcCC--CHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCcHHHHHHH
Confidence            3455556554  4577888899999988644 578889999999999999999999999999999999999887888888


Q ss_pred             HHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhc-----------------------------------------------
Q 015951          208 LELGALSKLMKMVKSSFVEEAVKALYTVSSLIR-----------------------------------------------  240 (397)
Q Consensus       208 l~~g~lp~Ll~LL~s~~~~v~~kAl~ALS~LiR-----------------------------------------------  240 (397)
                      .+.|++|+|+++|++++...+..|++||+++++                                               
T Consensus       527 ~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi~~~d~~~I~~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~~~~g~~  606 (2102)
T PLN03200        527 ESAGAVPALLWLLKNGGPKGQEIAAKTLTKLVRTADAATISQLTALLLGDLPESKVHVLDVLGHVLSVASLEDLVREGSA  606 (2102)
T ss_pred             HHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhccchhHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcchhHHHHHhhh
Confidence            788888888888888776677777777776643                                               


Q ss_pred             --------------------------------CChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhc
Q 015951          241 --------------------------------NNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLE  288 (397)
Q Consensus       241 --------------------------------~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klr~kA~~lL~~L~~~~l~  288 (397)
                                                      +++...+.++..||+++|+.+|++.  +.++++.++|+|.+|+..   
T Consensus       607 ~~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a~~~d~~~avv~agaIpPLV~LLss~--~~~v~keAA~AL~nL~~~---  681 (2102)
T PLN03200        607 ANDALRTLIQLLSSSKEETQEKAASVLADIFSSRQDLCESLATDEIINPCIKLLTNN--TEAVATQSARALAALSRS---  681 (2102)
T ss_pred             ccccHHHHHHHHcCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcC--ChHHHHHHHHHHHHHHhC---
Confidence                                            2333345566677888888888765  445788899999999863   


Q ss_pred             cCCCCcchhHHhCCcHHHHHHhccCCChHHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHHHHHhH
Q 015951          289 NMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLRTTEALVLKDFCGLDTALERLRQQLQ  358 (397)
Q Consensus       289 ~~~~~~~~~l~~~g~v~~Lv~lL~~~d~dv~E~aL~aL~~L~~~~~~~r~~~~~~~gL~~~L~~Lr~~~~  358 (397)
                       .++..+..+++.|.++.|+++|+..|.++++.|+.+|.+++++++ .+..+...+++.++++.||+...
T Consensus       682 -~~~~q~~~~v~~GaV~pL~~LL~~~d~~v~e~Al~ALanLl~~~e-~~~ei~~~~~I~~Lv~lLr~G~~  749 (2102)
T PLN03200        682 -IKENRKVSYAAEDAIKPLIKLAKSSSIEVAEQAVCALANLLSDPE-VAAEALAEDIILPLTRVLREGTL  749 (2102)
T ss_pred             -CCHHHHHHHHHcCCHHHHHHHHhCCChHHHHHHHHHHHHHHcCch-HHHHHHhcCcHHHHHHHHHhCCh
Confidence             344566778999999999999999999999999999999999987 56667778999999999987654

>PLN03200 cellulose synthase-interactive protein; Provisional

Probab=99.76  E-value=5.2e-17  Score=187.89  Aligned_cols=216  Identities=12%  Similarity=0.060  Sum_probs=183.4

Q ss_pred             CHHHHHHHHHHHHhccCC-CCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCcHHHHHHh
Q 015951          141 SLEDSQRALQELLILVEP-IDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKM  219 (397)
Q Consensus       141 s~e~k~~AL~~L~~Lve~-iDnA~~~~~lGGl~~Li~lL~s~~~~ir~~Aa~vLg~~aqNNp~~Q~~vl~~g~lp~Ll~L  219 (397)
                      +.+.+..+...|.+++.. .++...+...||+|+|+++|.++++.+|..|+|+|++++.+|+..+..+.+.|+||+|+++
T Consensus       417 ~~evQ~~Av~aL~~L~~~~~e~~~aIi~~ggIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~ndenr~aIieaGaIP~LV~L  496 (2102)
T PLN03200        417 TADVQEELIRALSSLCCGKGGLWEALGGREGVQLLISLLGLSSEQQQEYAVALLAILTDEVDESKWAITAAGGIPPLVQL  496 (2102)
T ss_pred             CHHHHHHHHHHHHHHhCCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHH
Confidence            468899999999999954 6778899999999999999999999999999999999999999999999999999999999


Q ss_pred             hcCCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchh-----------c
Q 015951          220 VKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQL-----------E  288 (397)
Q Consensus       220 L~s~~~~v~~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klr~kA~~lL~~L~~~~l-----------~  288 (397)
                      |.+++..++..|+|||+|++.+.+..+..+.++|+++.|+.+|+++  +.+.|..|+++|.+|+....           .
T Consensus       497 L~s~~~~iqeeAawAL~NLa~~~~qir~iV~~aGAIppLV~LL~sg--d~~~q~~Aa~AL~nLi~~~d~~~I~~Lv~LLl  574 (2102)
T PLN03200        497 LETGSQKAKEDSATVLWNLCCHSEDIRACVESAGAVPALLWLLKNG--GPKGQEIAAKTLTKLVRTADAATISQLTALLL  574 (2102)
T ss_pred             HcCCCHHHHHHHHHHHHHHhCCcHHHHHHHHHCCCHHHHHHHHhCC--CHHHHHHHHHHHHHHHhccchhHHHHHHHHhc
Confidence            9999999999999999999987666666666899999999999987  67899999999999974210           0


Q ss_pred             cCCCC---------------------cchhHHhCCcHHHHHHhccCCChHHHHHHHHHHHHHhcCChHHHHHHHhcCChH
Q 015951          289 NMHKV---------------------EPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLRTTEALVLKDFCGLD  347 (397)
Q Consensus       289 ~~~~~---------------------~~~~l~~~g~v~~Lv~lL~~~d~dv~E~aL~aL~~L~~~~~~~r~~~~~~~gL~  347 (397)
                      ..++.                     ........|.++.|+++|++++..+++.|+.+|.++.......+..+...+++.
T Consensus       575 sdd~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a~~~d~~~avv~agaIp  654 (2102)
T PLN03200        575 GDLPESKVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQLLSSSKEETQEKAASVLADIFSSRQDLCESLATDEIIN  654 (2102)
T ss_pred             CCChhHHHHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHHHHcCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHH
Confidence            00000                     011122468999999999999999999999999999998777666666689999


Q ss_pred             HHHHHHHHHhH
Q 015951          348 TALERLRQQLQ  358 (397)
Q Consensus       348 ~~L~~Lr~~~~  358 (397)
                      +++..|+..-.
T Consensus       655 PLV~LLss~~~  665 (2102)
T PLN03200        655 PCIKLLTNNTE  665 (2102)
T ss_pred             HHHHHHhcCCh
Confidence            99999887643

>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]

Probab=99.75  E-value=1.1e-17  Score=162.61  Aligned_cols=214  Identities=19%  Similarity=0.175  Sum_probs=190.6

Q ss_pred             CCCHHHHHHHHHHHhhC--CCCCHHHHHHHHHHHHhccCCCC-chhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHh
Q 015951          121 TPSDAQLIQIAIDDLNN--STLSLEDSQRALQELLILVEPID-NANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKAS  197 (397)
Q Consensus       121 ~~~d~~lmk~~i~~L~~--~~~s~e~k~~AL~~L~~Lve~iD-nA~~~~~lGGl~~Li~lL~s~~~~ir~~Aa~vLg~~a  197 (397)
                      .|.|...|.+++.+|..  .+.++|....|+..+.|+.+-.. ....+...|-.+.|+++|.+++..|+..|.+.+|+++
T Consensus       234 P~P~w~~isqalpiL~KLiys~D~evlvDA~WAiSYlsDg~~E~i~avld~g~~~RLvElLs~~sa~iqtPalR~vGNIV  313 (526)
T COG5064         234 PPPDWSNISQALPILAKLIYSRDPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSHESAKIQTPALRSVGNIV  313 (526)
T ss_pred             CCCchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHhcCccccccCHHHHhhcCee
Confidence            57788899998888754  23477889999999999997654 4556777888889999999999999999999999999


Q ss_pred             cCChHHHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHH
Q 015951          198 QNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVS  277 (397)
Q Consensus       198 qNNp~~Q~~vl~~g~lp~Ll~LL~s~~~~v~~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klr~kA~~  277 (397)
                      ..+....+.++..|+++.+..+|++..+.+|+.|+|.|||+..++....+++++++-+++|+++|.+-  +.++|..|||
T Consensus       314 TG~D~QTqviI~~G~L~a~~~lLs~~ke~irKEaCWTiSNITAGnteqiqavid~nliPpLi~lls~a--e~k~kKEACW  391 (526)
T COG5064         314 TGSDDQTQVIINCGALKAFRSLLSSPKENIRKEACWTISNITAGNTEQIQAVIDANLIPPLIHLLSSA--EYKIKKEACW  391 (526)
T ss_pred             ecCccceehheecccHHHHHHHhcChhhhhhhhhheeecccccCCHHHHHHHHhcccchHHHHHHHHH--HHHHHHHHHH
Confidence            99998888899999999999999998889999999999999999999999999999999999999975  8899999999


Q ss_pred             HHHHHhhchhccCCCCcchhHHhCCcHHHHHHhccCCChHHHHHHHHHHHHHhcCChHHHH
Q 015951          278 LVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLRTTEAL  338 (397)
Q Consensus       278 lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~dv~E~aL~aL~~L~~~~~~~r~  338 (397)
                      +++|..++.  ...|+....++++|+++.|.++|...|..+.|.+|.|+.+++..++..|.
T Consensus       392 AisNatsgg--~~~PD~iryLv~qG~IkpLc~~L~~~dNkiiev~LD~~eniLk~Ge~d~~  450 (526)
T COG5064         392 AISNATSGG--LNRPDIIRYLVSQGFIKPLCDLLDVVDNKIIEVALDAIENILKVGEQDRL  450 (526)
T ss_pred             HHHhhhccc--cCCchHHHHHHHccchhHHHHHHhccCccchhhhHHHHHHHHhhhhHHHH
Confidence            999998754  23578888999999999999999998889999999999999988765544

>PF08609 Fes1: Nucleotide exchange factor Fes1; InterPro: IPR013918 Fes1 is a cytosolic homologue of Sls1, an ER protein which has nucleotide exchange factor activity

Probab=99.73  E-value=5.1e-18  Score=138.56  Aligned_cols=87  Identities=37%  Similarity=0.564  Sum_probs=70.7

Q ss_pred             CChHHHHHHHHHhccccc--cccCCCCHHHHHHhHHHHHHHHHhc-CCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHHH
Q 015951           77 SSIDGMLQWAIAKLKETA--QDVQRLSPSELKKRQMEIKELMEKL-KTPSDAQLIQIAIDDLNNSTLSLEDSQRALQELL  153 (397)
Q Consensus        77 ~~l~glLkwsi~~~~~~~--~~~~~~s~e~l~~r~~~L~ea~~~~-~~~~d~~lmk~~i~~L~~~~~s~e~k~~AL~~L~  153 (397)
                      ++|+|||||||+|+..+.  +.....+|..  +|++|..++|+.+ ++|+|+++||+++++|.+++.++|+|+.||++|+
T Consensus         3 ~~l~~LLkWsI~ns~~~~~~~~~~~~~~~~--~~~~l~~~~L~~l~~~~sda~lMK~a~~vl~~~~~t~edk~~Ald~le   80 (92)
T PF08609_consen    3 PNLNGLLKWSIENSTTSASDAPPSAEQPDE--ERRQLDPEALDALFGGPSDAELMKEAMEVLEDPEVTLEDKLIALDNLE   80 (92)
T ss_pred             HHHHHHHHHHHHcCCCCccccccCcCCchh--hhhhccHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
Confidence            479999999999984222  2222222221  4677888887776 5999999999999999999999999999999999


Q ss_pred             hccCCCCchhHH
Q 015951          154 ILVEPIDNANDL  165 (397)
Q Consensus       154 ~Lve~iDnA~~~  165 (397)
                      +|||+|||||++
T Consensus        81 ~LVE~IDNANnl   92 (92)
T PF08609_consen   81 ELVENIDNANNL   92 (92)
T ss_pred             HHHHcccccccC
Confidence            999999999985

Fes1 in yeast has been shown to bind to the molecular chaperone Hsp70 and has adenyl-nucleotide exchange factor activity [].

>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]

Probab=99.69  E-value=1.1e-16  Score=155.86  Aligned_cols=212  Identities=16%  Similarity=0.196  Sum_probs=178.1

Q ss_pred             CHHHHHHHHHHHHhccCCCC--chhHHHhcCCHHHHHHhc-CCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCcHHHHH
Q 015951          141 SLEDSQRALQELLILVEPID--NANDLSKLGGLSVLVGQL-NHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLM  217 (397)
Q Consensus       141 s~e~k~~AL~~L~~Lve~iD--nA~~~~~lGGl~~Li~lL-~s~~~~ir~~Aa~vLg~~aqNNp~~Q~~vl~~g~lp~Ll  217 (397)
                      +.|....|.-.+..++.--+  --...+..|.+|.+++++ ++...-++..|+|+|.+++.........+++.|++|.++
T Consensus        84 Die~q~qav~kFR~~LS~E~~PPIq~VIdaGvVpRfvefm~~~q~~mlqfEAaWalTNiaSGtt~QTkvVvd~~AVPlfi  163 (526)
T COG5064          84 DIEQQLQAVYKFRKLLSKETSPPIQPVIDAGVVPRFVEFMDEIQRDMLQFEAAWALTNIASGTTQQTKVVVDAGAVPLFI  163 (526)
T ss_pred             HHHHHHHHHHHHHHHhccccCCCchhHHhccccHHHHHHHHhcchhHHHHHHHHHHhhhccCcccceEEEEeCCchHHHH
Confidence            46777788888887775443  346788899999999999 667788999999999999998776667788999999999


Q ss_pred             HhhcCCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhc---------
Q 015951          218 KMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLE---------  288 (397)
Q Consensus       218 ~LL~s~~~~v~~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klr~kA~~lL~~L~~~~l~---------  288 (397)
                      +||.+++..|+..|+|||+|+..+++..++.+++.|.+++|..++.+...++++-+.+.|+|+|||..+-.         
T Consensus       164 qlL~s~~~~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNlcRGknP~P~w~~isq  243 (526)
T COG5064         164 QLLSSTEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCRGKNPPPDWSNISQ  243 (526)
T ss_pred             HHHcCchHHHHHHHHHHhccccCCchhHHHHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHhhCCCCCCCchHHHHH
Confidence            99999999999999999999999999999999999999999999998777789999999999999985310         


Q ss_pred             ----------------------------cCCCCcchhHHhCCcHHHHHHhccCCChHHHHHHHHHHHHHhcCChHHHHHH
Q 015951          289 ----------------------------NMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLRTTEALVL  340 (397)
Q Consensus       289 ----------------------------~~~~~~~~~l~~~g~v~~Lv~lL~~~d~dv~E~aL~aL~~L~~~~~~~r~~~  340 (397)
                                                  ....+....+.+.|..+.|+++|.+++..++..|++.+++++..++..-+++
T Consensus       244 alpiL~KLiys~D~evlvDA~WAiSYlsDg~~E~i~avld~g~~~RLvElLs~~sa~iqtPalR~vGNIVTG~D~QTqvi  323 (526)
T COG5064         244 ALPILAKLIYSRDPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSHESAKIQTPALRSVGNIVTGSDDQTQVI  323 (526)
T ss_pred             HHHHHHHHHhhcCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHhcCccccccCHHHHhhcCeeecCccceehh
Confidence                                        0001344567889999999999999999999999999999999887666666


Q ss_pred             HhcCChHHHHHHH
Q 015951          341 KDFCGLDTALERL  353 (397)
Q Consensus       341 ~~~~gL~~~L~~L  353 (397)
                      - .||..+.+..|
T Consensus       324 I-~~G~L~a~~~l  335 (526)
T COG5064         324 I-NCGALKAFRSL  335 (526)
T ss_pred             e-ecccHHHHHHH
Confidence            6 56654444433

>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.68  E-value=1.4e-15  Score=149.24  Aligned_cols=204  Identities=19%  Similarity=0.236  Sum_probs=178.7

Q ss_pred             HHHHHHHHHHHHhccCCCCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcC--cHHHHHHh
Q 015951          142 LEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELG--ALSKLMKM  219 (397)
Q Consensus       142 ~e~k~~AL~~L~~Lve~iDnA~~~~~lGGl~~Li~lL~s~~~~ir~~Aa~vLg~~aqNNp~~Q~~vl~~g--~lp~Ll~L  219 (397)
                      ...+-.++..|..+.+..+|.+.++..||+|.|+.+|+++++++|.+++..|++++- ....+....+.+  .+|.|++|
T Consensus       181 irvqrnatgaLlnmThs~EnRr~LV~aG~lpvLVsll~s~d~dvqyycttaisnIaV-d~~~Rk~Laqaep~lv~~Lv~L  259 (550)
T KOG4224|consen  181 IRVQRNATGALLNMTHSRENRRVLVHAGGLPVLVSLLKSGDLDVQYYCTTAISNIAV-DRRARKILAQAEPKLVPALVDL  259 (550)
T ss_pred             hhHHHHHHHHHHHhhhhhhhhhhhhccCCchhhhhhhccCChhHHHHHHHHhhhhhh-hHHHHHHHHhcccchHHHHHHH
Confidence            345567999999999999999999999999999999999999999999999999996 466888888888  89999999


Q ss_pred             hcCCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHH
Q 015951          220 VKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFR  299 (397)
Q Consensus       220 L~s~~~~v~~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klr~kA~~lL~~L~~~~l~~~~~~~~~~l~  299 (397)
                      .+++++.++-.|-.||.++..+ ...+..++++||+|.++.+|+++  ..++....+++|.|++-      +|-....+.
T Consensus       260 md~~s~kvkcqA~lALrnlasd-t~Yq~eiv~ag~lP~lv~Llqs~--~~plilasVaCIrnisi------hplNe~lI~  330 (550)
T KOG4224|consen  260 MDDGSDKVKCQAGLALRNLASD-TEYQREIVEAGSLPLLVELLQSP--MGPLILASVACIRNISI------HPLNEVLIA  330 (550)
T ss_pred             HhCCChHHHHHHHHHHhhhccc-chhhhHHHhcCCchHHHHHHhCc--chhHHHHHHHHHhhccc------ccCccccee
Confidence            9999999999999999999765 45578889999999999999987  45578889999999985      555556688


Q ss_pred             hCCcHHHHHHhccCCCh-HHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHHHH
Q 015951          300 DRFFLKSVVDLTASADL-DLQEKALAAIKNLLQLRTTEALVLKDFCGLDTALERLRQ  355 (397)
Q Consensus       300 ~~g~v~~Lv~lL~~~d~-dv~E~aL~aL~~L~~~~~~~r~~~~~~~gL~~~L~~Lr~  355 (397)
                      +.|+++.||.+|+.+|. ++|-+|..+|++|+..++..+.+|++.|.++.+.+.++.
T Consensus       331 dagfl~pLVrlL~~~dnEeiqchAvstLrnLAasse~n~~~i~esgAi~kl~eL~lD  387 (550)
T KOG4224|consen  331 DAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASSEHNVSVIRESGAIPKLIELLLD  387 (550)
T ss_pred             cccchhHHHHHHhcCCchhhhhhHHHHHHHHhhhhhhhhHHHhhcCchHHHHHHHhc
Confidence            99999999999998754 599999999999999888889999988888777776643

>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.62  E-value=1.9e-15  Score=148.33  Aligned_cols=208  Identities=14%  Similarity=0.150  Sum_probs=183.1

Q ss_pred             HHHHHHHHHHHHhccCCCCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCcHHHHHHhhc
Q 015951          142 LEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVK  221 (397)
Q Consensus       142 ~e~k~~AL~~L~~Lve~iDnA~~~~~lGGl~~Li~lL~s~~~~ir~~Aa~vLg~~aqNNp~~Q~~vl~~g~lp~Ll~LL~  221 (397)
                      ..-...|-..+-++.-+..|.-.+++++|+.+|+.....+..++|+.|..||.+++.- ...+..+...|++.+|.+|.+
T Consensus        99 ~~Iq~aa~~alGnlAVn~enk~liv~l~Gl~~Li~qmmtd~vevqcnaVgCitnLaT~-d~nk~kiA~sGaL~pltrLak  177 (550)
T KOG4224|consen   99 KCIQCAAGEALGNLAVNMENKGLIVSLLGLDLLILQMMTDGVEVQCNAVGCITNLATF-DSNKVKIARSGALEPLTRLAK  177 (550)
T ss_pred             hhhhhhhhhhhccceeccCCceEEEeccChHHHHHHhcCCCcEEEeeehhhhhhhhcc-ccchhhhhhccchhhhHhhcc
Confidence            3445567788888888899999999999999999999999999999999999999976 668889999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHHhC
Q 015951          222 SSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDR  301 (397)
Q Consensus       222 s~~~~v~~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klr~kA~~lL~~L~~~~l~~~~~~~~~~l~~~  301 (397)
                      +.+..++..|+.||++|. |...+++.++.+||++.|+.+++++  +..+|..++.++++++.      +...+..+.+.
T Consensus       178 skdirvqrnatgaLlnmT-hs~EnRr~LV~aG~lpvLVsll~s~--d~dvqyycttaisnIaV------d~~~Rk~Laqa  248 (550)
T KOG4224|consen  178 SKDIRVQRNATGALLNMT-HSRENRRVLVHAGGLPVLVSLLKSG--DLDVQYYCTTAISNIAV------DRRARKILAQA  248 (550)
T ss_pred             cchhhHHHHHHHHHHHhh-hhhhhhhhhhccCCchhhhhhhccC--ChhHHHHHHHHhhhhhh------hHHHHHHHHhc
Confidence            988999999999999995 5678899999999999999999987  55689999999999985      45667778777


Q ss_pred             C--cHHHHHHhccCCChHHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHHHHHhHHh
Q 015951          302 F--FLKSVVDLTASADLDLQEKALAAIKNLLQLRTTEALVLKDFCGLDTALERLRQQLQEV  360 (397)
Q Consensus       302 g--~v~~Lv~lL~~~d~dv~E~aL~aL~~L~~~~~~~r~~~~~~~gL~~~L~~Lr~~~~~l  360 (397)
                      +  +++.|++++..+++.++-+|..||++|+++.+..+...+ .|+|+..++.||+-+-.+
T Consensus       249 ep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasdt~Yq~eiv~-ag~lP~lv~Llqs~~~pl  308 (550)
T KOG4224|consen  249 EPKLVPALVDLMDDGSDKVKCQAGLALRNLASDTEYQREIVE-AGSLPLLVELLQSPMGPL  308 (550)
T ss_pred             ccchHHHHHHHHhCCChHHHHHHHHHHhhhcccchhhhHHHh-cCCchHHHHHHhCcchhH
Confidence            7  999999999999999999999999999999886666555 999999999997766443

>cd00020 ARM Armadillo/beta-catenin-like repeats

Probab=99.55  E-value=1.5e-13  Score=114.30  Aligned_cols=118  Identities=25%  Similarity=0.381  Sum_probs=111.2

Q ss_pred             HHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCh
Q 015951          164 DLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNL  243 (397)
Q Consensus       164 ~~~~lGGl~~Li~lL~s~~~~ir~~Aa~vLg~~aqNNp~~Q~~vl~~g~lp~Ll~LL~s~~~~v~~kAl~ALS~LiR~~~  243 (397)
                      .+++.|+++.++++|.++++.+|..|+++|++++.++|.....+++.|++|.|++++.++++.++..|+++|++++.+.+
T Consensus         2 ~~~~~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~   81 (120)
T cd00020           2 AVIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPE   81 (120)
T ss_pred             hHHHcCChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcH
Confidence            36789999999999999999999999999999999999999999999999999999999889999999999999999988


Q ss_pred             hcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHh
Q 015951          244 AGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLA  283 (397)
Q Consensus       244 ~~~~~f~~~gGi~~L~~lL~s~~~d~klr~kA~~lL~~L~  283 (397)
                      .....+.+.|+++.|.+++.++  +.+++..+++++.+|+
T Consensus        82 ~~~~~~~~~g~l~~l~~~l~~~--~~~~~~~a~~~l~~l~  119 (120)
T cd00020          82 DNKLIVLEAGGVPKLVNLLDSS--NEDIQKNATGALSNLA  119 (120)
T ss_pred             HHHHHHHHCCChHHHHHHHhcC--CHHHHHHHHHHHHHhh
Confidence            8888889999999999999986  6679999999999987

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.

>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]

Probab=99.44  E-value=1.3e-12  Score=138.90  Aligned_cols=214  Identities=16%  Similarity=0.187  Sum_probs=175.4

Q ss_pred             CHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChh--cHH
Q 015951          170 GLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLA--GQE  247 (397)
Q Consensus       170 Gl~~Li~lL~s~~~~ir~~Aa~vLg~~aqNNp~~Q~~vl~~g~lp~Ll~LL~s~~~~v~~kAl~ALS~LiR~~~~--~~~  247 (397)
                      =+|..+.+|.+.++.++..|+..|..+|..+.+++..+.+.|+||+|+.+|.+...+|+..|++||-|++.+...  +.-
T Consensus       234 ~lpe~i~mL~~q~~~~qsnaaaylQHlcfgd~~ik~~vrqlggI~kLv~Ll~~~~~evq~~acgaLRNLvf~~~~~~NKl  313 (717)
T KOG1048|consen  234 TLPEVISMLMSQDPSVQSNAAAYLQHLCFGDNKIKSRVRQLGGIPKLVALLDHRNDEVQRQACGALRNLVFGKSTDSNKL  313 (717)
T ss_pred             ccHHHHHHHhccChhhhHHHHHHHHHHHhhhHHHHHHHHHhccHHHHHHHhcCCcHHHHHHHHHHHHhhhcccCCcccch
Confidence            367788999999999999999999999999999999999999999999999999999999999999999998766  888


Q ss_pred             HHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHHhCCcHHHHHHh-cc-------------C
Q 015951          248 MFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDL-TA-------------S  313 (397)
Q Consensus       248 ~f~~~gGi~~L~~lL~s~~~d~klr~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~l-L~-------------~  313 (397)
                      ++.++||++.++++|+... |..++..++.+++||.+      .+..+..++... +..|.+- +.             -
T Consensus       314 ai~~~~Gv~~l~~~Lr~t~-D~ev~e~iTg~LWNLSS------~D~lK~~ii~~a-l~tLt~~vI~P~Sgw~~~~~~~~~  385 (717)
T KOG1048|consen  314 AIKELNGVPTLVRLLRHTQ-DDEVRELITGILWNLSS------NDALKMLIITSA-LSTLTDNVIIPHSGWEEEPAPRKA  385 (717)
T ss_pred             hhhhcCChHHHHHHHHhhc-chHHHHHHHHHHhcccc------hhHHHHHHHHHH-HHHHHHhhcccccccCCCCccccc
Confidence            8999999999999999642 45689999999999985      344555444433 3333222 11             1


Q ss_pred             CChHHHHHHHHHHHHHhcCChHHHHHHHhcCCh-HHHHHHHHHHhHHhhhhhhhhhhHHhHHHHH-------HHHHHHHH
Q 015951          314 ADLDLQEKALAAIKNLLQLRTTEALVLKDFCGL-DTALERLRQQLQEVMLEEDQRDYAMDVEALR-------REVELIFF  385 (397)
Q Consensus       314 ~d~dv~E~aL~aL~~L~~~~~~~r~~~~~~~gL-~~~L~~Lr~~~~~l~~~e~~~~~~~~l~~~~-------~e~~~~~~  385 (397)
                      .+.++...+..||+++++.+.+.|+.++++.|| +.++..++.-+....-|.+.+|+|.  +.+|       .||-.-++
T Consensus       386 ~~~~vf~n~tgcLRNlSs~~~eaR~~mr~c~GLIdaL~~~iq~~i~~~~~d~K~VENcv--CilRNLSYrl~~Evp~~~~  463 (717)
T KOG1048|consen  386 EDSTVFRNVTGCLRNLSSAGQEAREQMRECDGLIDALLFSIQTAIQKSDLDSKSVENCV--CILRNLSYRLEAEVPPKYR  463 (717)
T ss_pred             ccceeeehhhhhhccccchhHHHHHHHhhccchHHHHHHHHHHHHHhccccchhHHHHH--HHHhhcCchhhhhcCHhhh
Confidence            146788999999999999988999999988886 8888888877777777999999994  4477       56666666


Q ss_pred             HHhhhccc
Q 015951          386 RKLDDSGS  393 (397)
Q Consensus       386 ~~~~~~~~  393 (397)
                      +-+..++.
T Consensus       464 ~~~~~~~~  471 (717)
T KOG1048|consen  464 QVLANIAR  471 (717)
T ss_pred             hHhhcccc
Confidence            66665553

>cd00020 ARM Armadillo/beta-catenin-like repeats

Probab=99.37  E-value=1.2e-11  Score=102.78  Aligned_cols=118  Identities=21%  Similarity=0.229  Sum_probs=107.7

Q ss_pred             HHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhc
Q 015951          206 QVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKC  285 (397)
Q Consensus       206 ~vl~~g~lp~Ll~LL~s~~~~v~~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klr~kA~~lL~~L~~~  285 (397)
                      .+.+.|+++.|++++.+++..++..++++|++++.+++.....|++.|+++.|..+|.++  +.+++..+++++++|+..
T Consensus         2 ~~~~~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~--~~~v~~~a~~~L~~l~~~   79 (120)
T cd00020           2 AVIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSE--DEEVVKAALWALRNLAAG   79 (120)
T ss_pred             hHHHcCChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCC--CHHHHHHHHHHHHHHccC
Confidence            467899999999999998889999999999999999999999999999999999999986  678999999999999962


Q ss_pred             hhccCCCCcchhHHhCCcHHHHHHhccCCChHHHHHHHHHHHHHh
Q 015951          286 QLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLL  330 (397)
Q Consensus       286 ~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~dv~E~aL~aL~~L~  330 (397)
                           .+.....+.+.|+++.++.++..++..+++.++.+|.+|+
T Consensus        80 -----~~~~~~~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~  119 (120)
T cd00020          80 -----PEDNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLA  119 (120)
T ss_pred             -----cHHHHHHHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhh
Confidence                 4456677788999999999999999999999999999986

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.

>PF05804 KAP: Kinesin-associated protein (KAP)

Probab=99.27  E-value=2.1e-10  Score=123.88  Aligned_cols=194  Identities=18%  Similarity=0.169  Sum_probs=165.9

Q ss_pred             HHHHHHHhccCCCCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCcHHHHHHhhcCCCHH
Q 015951          147 RALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVE  226 (397)
Q Consensus       147 ~AL~~L~~Lve~iDnA~~~~~lGGl~~Li~lL~s~~~~ir~~Aa~vLg~~aqNNp~~Q~~vl~~g~lp~Ll~LL~s~~~~  226 (397)
                      .++.-|.++.++..+-..+.+-|++++|+.+|.+.+.++...+..+|..++-. ++++..+.+.|++|+|++++.+++..
T Consensus       268 v~~~lLlNLAed~~ve~kM~~~~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~-~ENK~~m~~~giV~kL~kLl~s~~~~  346 (708)
T PF05804_consen  268 VAFYLLLNLAEDPRVELKMVNKGIVSLLVKCLDRENEELLILAVTFLKKLSIF-KENKDEMAESGIVEKLLKLLPSENED  346 (708)
T ss_pred             HHHHHHHHHhcChHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHcCC-HHHHHHHHHcCCHHHHHHHhcCCCHH
Confidence            45777899999999999999999999999999999999999999999999974 66999999999999999999999988


Q ss_pred             HHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHHhCCcHHH
Q 015951          227 EAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKS  306 (397)
Q Consensus       227 v~~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klr~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~  306 (397)
                      +...++.+|.|+.- ++..+..+++.|.++.|+.+|.++  +  .+.-+..+|++|+.      ++..+..|...+.++.
T Consensus       347 l~~~aLrlL~NLSf-d~~~R~~mV~~GlIPkLv~LL~d~--~--~~~val~iLy~LS~------dd~~r~~f~~TdcIp~  415 (708)
T PF05804_consen  347 LVNVALRLLFNLSF-DPELRSQMVSLGLIPKLVELLKDP--N--FREVALKILYNLSM------DDEARSMFAYTDCIPQ  415 (708)
T ss_pred             HHHHHHHHHHHhCc-CHHHHHHHHHCCCcHHHHHHhCCC--c--hHHHHHHHHHHhcc------CHhhHHHHhhcchHHH
Confidence            99999999999965 567799999999999999999975  2  46679999999985      5678888988899999


Q ss_pred             HHHhcc-CCChHHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHH
Q 015951          307 VVDLTA-SADLDLQEKALAAIKNLLQLRTTEALVLKDFCGLDTALERL  353 (397)
Q Consensus       307 Lv~lL~-~~d~dv~E~aL~aL~~L~~~~~~~r~~~~~~~gL~~~L~~L  353 (397)
                      +++++- .++..+...++..+.+|+.+.. +.+.+-+.+||..++.+.
T Consensus       416 L~~~Ll~~~~~~v~~eliaL~iNLa~~~r-naqlm~~g~gL~~L~~ra  462 (708)
T PF05804_consen  416 LMQMLLENSEEEVQLELIALLINLALNKR-NAQLMCEGNGLQSLMKRA  462 (708)
T ss_pred             HHHHHHhCCCccccHHHHHHHHHHhcCHH-HHHHHHhcCcHHHHHHHH
Confidence            999754 4566666667778889998876 456676678887766544

>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells

Probab=99.22  E-value=1.7e-09  Score=113.83  Aligned_cols=212  Identities=17%  Similarity=0.157  Sum_probs=172.4

Q ss_pred             HHHHhhCCCCCHHHHHHHHHHHHhccCCCCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHHHHHHHHc
Q 015951          131 AIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLEL  210 (397)
Q Consensus       131 ~i~~L~~~~~s~e~k~~AL~~L~~Lve~iDnA~~~~~lGGl~~Li~lL~s~~~~ir~~Aa~vLg~~aqNNp~~Q~~vl~~  210 (397)
                      ++..|+..  +.|....+.+.|..++...+-...  .-+..+.|...|.|+++.||..|++.|+.+++++....+.+.+.
T Consensus        43 lf~~L~~~--~~e~v~~~~~iL~~~l~~~~~~~l--~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~  118 (503)
T PF10508_consen   43 LFDCLNTS--NREQVELICDILKRLLSALSPDSL--LPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDN  118 (503)
T ss_pred             HHHHHhhc--ChHHHHHHHHHHHHHHhccCHHHH--HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCc
Confidence            44555544  456666677888888877654443  33456777789999999999999999999999998888889999


Q ss_pred             CcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccC
Q 015951          211 GALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENM  290 (397)
Q Consensus       211 g~lp~Ll~LL~s~~~~v~~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klr~kA~~lL~~L~~~~l~~~  290 (397)
                      +.++.++.++.+++.++...|+.+|+.++++ ++..+.++..++...|..++..++  ..+|.++..++.+++.     .
T Consensus       119 ~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~-~~~~~~l~~~~~~~~L~~l~~~~~--~~vR~Rv~el~v~i~~-----~  190 (503)
T PF10508_consen  119 ELLPLIIQCLRDPDLSVAKAAIKALKKLASH-PEGLEQLFDSNLLSKLKSLMSQSS--DIVRCRVYELLVEIAS-----H  190 (503)
T ss_pred             cHHHHHHHHHcCCcHHHHHHHHHHHHHHhCC-chhHHHHhCcchHHHHHHHHhccC--HHHHHHHHHHHHHHHh-----c
Confidence            9999999999999999999999999999975 556677888899999999998753  2478889999999986     3


Q ss_pred             CCCcchhHHhCCcHHHHHHhccCCChHHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHHHH
Q 015951          291 HKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLRTTEALVLKDFCGLDTALERLRQ  355 (397)
Q Consensus       291 ~~~~~~~l~~~g~v~~Lv~lL~~~d~dv~E~aL~aL~~L~~~~~~~r~~~~~~~gL~~~L~~Lr~  355 (397)
                      +++..+.+.+.|+++.++..|.++|.-++..++..|..|+... ...+.+.+.|.++.+...+..
T Consensus       191 S~~~~~~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~~~-~g~~yL~~~gi~~~L~~~l~~  254 (503)
T PF10508_consen  191 SPEAAEAVVNSGLLDLLLKELDSDDILVQLNALELLSELAETP-HGLQYLEQQGIFDKLSNLLQD  254 (503)
T ss_pred             CHHHHHHHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHcCh-hHHHHHHhCCHHHHHHHHHhc
Confidence            6677888889999999999999999999999999999999954 456666655555555555433

26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding

>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function

Probab=99.21  E-value=4.4e-10  Score=108.28  Aligned_cols=175  Identities=17%  Similarity=0.170  Sum_probs=137.2

Q ss_pred             HhcCCHHHHHHhcC-CCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChh
Q 015951          166 SKLGGLSVLVGQLN-HPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLA  244 (397)
Q Consensus       166 ~~lGGl~~Li~lL~-s~~~~ir~~Aa~vLg~~aqNNp~~Q~~vl~~g~lp~Ll~LL~s~~~~v~~kAl~ALS~LiR~~~~  244 (397)
                      ...+.++.|+.+|. +.+|.++..|..++|+.+. .|..|+.+.+.|+++.+..+++++++.++.+|++||.++.-+ .+
T Consensus         9 l~~~~l~~Ll~lL~~t~dp~i~e~al~al~n~aa-f~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~-~e   86 (254)
T PF04826_consen    9 LEAQELQKLLCLLESTEDPFIQEKALIALGNSAA-FPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVN-DE   86 (254)
T ss_pred             cCHHHHHHHHHHHhcCCChHHHHHHHHHHHhhcc-ChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCC-hh
Confidence            44567889999996 5689999999999999875 799999999999999999999999999999999999999655 44


Q ss_pred             cHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHHhCCcHHHHHHhccCCChHHHHHHHH
Q 015951          245 GQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALA  324 (397)
Q Consensus       245 ~~~~f~~~gGi~~L~~lL~s~~~d~klr~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~dv~E~aL~  324 (397)
                      ++..+ +.-+-.++..+...+ .+..+|..+..+|.+|+.      .++....+.  +.++.++.+|.+++..++.+++.
T Consensus        87 n~~~I-k~~i~~Vc~~~~s~~-lns~~Q~agLrlL~nLtv------~~~~~~~l~--~~i~~ll~LL~~G~~~~k~~vLk  156 (254)
T PF04826_consen   87 NQEQI-KMYIPQVCEETVSSP-LNSEVQLAGLRLLTNLTV------TNDYHHMLA--NYIPDLLSLLSSGSEKTKVQVLK  156 (254)
T ss_pred             hHHHH-HHHHHHHHHHHhcCC-CCCHHHHHHHHHHHccCC------CcchhhhHH--hhHHHHHHHHHcCChHHHHHHHH
Confidence            45544 333444444444443 355689999999999975      233344443  47899999999999999999999


Q ss_pred             HHHHHhcCChHHHHHHHhcCChHHHHHHH
Q 015951          325 AIKNLLQLRTTEALVLKDFCGLDTALERL  353 (397)
Q Consensus       325 aL~~L~~~~~~~r~~~~~~~gL~~~L~~L  353 (397)
                      +|.+|++.+...+..+. +.++...+..+
T Consensus       157 ~L~nLS~np~~~~~Ll~-~q~~~~~~~Lf  184 (254)
T PF04826_consen  157 VLVNLSENPDMTRELLS-AQVLSSFLSLF  184 (254)
T ss_pred             HHHHhccCHHHHHHHHh-ccchhHHHHHH
Confidence            99999999876777665 55555544433

>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=99.13  E-value=5.7e-09  Score=103.21  Aligned_cols=181  Identities=18%  Similarity=0.150  Sum_probs=143.6

Q ss_pred             HHHHHhccCCCCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCcHHHHHHhhcCCCHHHH
Q 015951          149 LQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEA  228 (397)
Q Consensus       149 L~~L~~Lve~iDnA~~~~~lGGl~~Li~lL~s~~~~ir~~Aa~vLg~~aqNNp~~Q~~vl~~g~lp~Ll~LL~s~~~~v~  228 (397)
                      -+..-+.+++....-++.++  ++..+.-..+.+.+=+..|..-|-..+.+ -..-..+...||+++++..+.+++.++|
T Consensus        65 ~e~~k~~~~~~~~~~~~~~~--~~~~~~~~~s~~le~ke~ald~Le~lve~-iDnAndl~~~ggl~~ll~~l~~~~~~lR  141 (342)
T KOG2160|consen   65 TEDQKDFVEDMKVISDVMSM--IPIVILNSSSVDLEDKEDALDNLEELVED-IDNANDLISLGGLVPLLGYLENSDAELR  141 (342)
T ss_pred             hhhhhhhcccchhHHHHHHh--hhhhccCcccCCHHHHHHHHHHHHHHHHh-hhhHHhHhhccCHHHHHHHhcCCcHHHH
Confidence            34445666777766666666  22222223456788889999999999964 5577788999999999999999999999


Q ss_pred             HHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHHhCCcHHHHH
Q 015951          229 VKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVV  308 (397)
Q Consensus       229 ~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klr~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv  308 (397)
                      ++|++.|+.+++|||..|..+++.||.+.|..++.++ ++...|.||.+++++|..+     ++.-...|...+....|.
T Consensus       142 ~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~~ls~~-~~~~~r~kaL~AissLIRn-----~~~g~~~fl~~~G~~~L~  215 (342)
T KOG2160|consen  142 ELAARVIGTAVQNNPKSQEQVIELGALSKLLKILSSD-DPNTVRTKALFAISSLIRN-----NKPGQDEFLKLNGYQVLR  215 (342)
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHcccHHHHHHHHccC-CCchHHHHHHHHHHHHHhc-----CcHHHHHHHhcCCHHHHH
Confidence            9999999999999999999999999999999999965 4567899999999999984     444444455555588999


Q ss_pred             HhccC--CChHHHHHHHHHHHHHhcCChHHHH
Q 015951          309 DLTAS--ADLDLQEKALAAIKNLLQLRTTEAL  338 (397)
Q Consensus       309 ~lL~~--~d~dv~E~aL~aL~~L~~~~~~~r~  338 (397)
                      ..+.+  .+..++.+++..+..|++.....+.
T Consensus       216 ~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~d  247 (342)
T KOG2160|consen  216 DVLQSNNTSVKLKRKALFLLSLLLQEDKSDED  247 (342)
T ss_pred             HHHHcCCcchHHHHHHHHHHHHHHHhhhhhhh
Confidence            99988  5788999999999999876443333

>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=99.11  E-value=5.8e-09  Score=103.22  Aligned_cols=236  Identities=22%  Similarity=0.266  Sum_probs=162.3

Q ss_pred             HHHHHHHHHHhhCCCCCHHHHHHHHHHHHhccCC-CCchhHHHhcC------CHHHHHHhcCCCCHHHHHHHHHHHHHHh
Q 015951          125 AQLIQIAIDDLNNSTLSLEDSQRALQELLILVEP-IDNANDLSKLG------GLSVLVGQLNHPDTDIRKISAWILGKAS  197 (397)
Q Consensus       125 ~~lmk~~i~~L~~~~~s~e~k~~AL~~L~~Lve~-iDnA~~~~~lG------Gl~~Li~lL~s~~~~ir~~Aa~vLg~~a  197 (397)
                      +..+-.++..+   ...++...-.|--+.+++.+ .....-|....      -+.+++.++.+++.-++..|+.+++.+.
T Consensus        57 ~~~~l~lL~~~---~~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll~~~D~~i~~~a~~iLt~Ll  133 (312)
T PF03224_consen   57 ASLFLNLLNKL---SSNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLLDRNDSFIQLKAAFILTSLL  133 (312)
T ss_dssp             -----HHHHHH------HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH-S-SSHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHc---cCcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence            33444455544   22446666677777777744 45666677643      4899999999999999999999999998


Q ss_pred             cCChHHHHHHHHcCcHHHHHHhhcCC----CHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhh-----cCCCcc
Q 015951          198 QNNPLVQKQVLELGALSKLMKMVKSS----FVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDIL-----GNSSFE  268 (397)
Q Consensus       198 qNNp~~Q~~vl~~g~lp~Ll~LL~s~----~~~v~~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL-----~s~~~d  268 (397)
                      ...+....... .+.++.+++.+.+.    +.+++.-++.++++++|. +..+..|.+.||++.|..++     .+++.+
T Consensus       134 ~~~~~~~~~~~-~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~-~~~R~~f~~~~~v~~l~~iL~~~~~~~~~~~  211 (312)
T PF03224_consen  134 SQGPKRSEKLV-KEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRS-KEYRQVFWKSNGVSPLFDILRKQATNSNSSG  211 (312)
T ss_dssp             TSTTT--HHHH-HHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTS-HHHHHHHHTHHHHHHHHHHHH---------H
T ss_pred             HcCCccccchH-HHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCc-chhHHHHHhcCcHHHHHHHHHhhcccCCCCc
Confidence            77665444433 45778888888763    235678899999999974 77899999999999999999     344467


Q ss_pred             HHHHHHHHHHHHHHhhchhccCCCCcchhHHhCCcHHHHHHhccCC-ChHHHHHHHHHHHHHhcCChH-HHHHHHhcCCh
Q 015951          269 IRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASA-DLDLQEKALAAIKNLLQLRTT-EALVLKDFCGL  346 (397)
Q Consensus       269 ~klr~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~-d~dv~E~aL~aL~~L~~~~~~-~r~~~~~~~gL  346 (397)
                      ..++-.++++++-|+.      ++...+.+.+.++++.++++++.. ...+..-++.++.||+..+.. +...+- .+|+
T Consensus       212 ~Ql~Y~~ll~lWlLSF------~~~~~~~~~~~~~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~~~~~~~~~~mv-~~~~  284 (312)
T PF03224_consen  212 IQLQYQALLCLWLLSF------EPEIAEELNKKYLIPLLADILKDSIKEKVVRVSLAILRNLLSKAPKSNIELMV-LCGL  284 (312)
T ss_dssp             HHHHHHHHHHHHHHTT------SHHHHHHHHTTSHHHHHHHHHHH--SHHHHHHHHHHHHHTTSSSSTTHHHHHH-HH-H
T ss_pred             hhHHHHHHHHHHHHhc------CHHHHHHHhccchHHHHHHHHHhcccchHHHHHHHHHHHHHhccHHHHHHHHH-HccH
Confidence            8899999999999986      566777888899999999998764 678999999999999988763 444444 5778


Q ss_pred             HHHHHHHHHHhHHhhhhhhhhhhHHhHHHHHH
Q 015951          347 DTALERLRQQLQEVMLEEDQRDYAMDVEALRR  378 (397)
Q Consensus       347 ~~~L~~Lr~~~~~l~~~e~~~~~~~~l~~~~~  378 (397)
                      .+.+..|..+   -..|+   |-.+|++.+.+
T Consensus       285 l~~l~~L~~r---k~~De---dl~edl~~L~e  310 (312)
T PF03224_consen  285 LKTLQNLSER---KWSDE---DLTEDLEFLKE  310 (312)
T ss_dssp             HHHHHHHHSS-----SSH---HHHHHHHHHHH
T ss_pred             HHHHHHHhcC---CCCCH---HHHHHHHHHHh
Confidence            7887777554   22444   34455655554

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.

>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function

Probab=98.99  E-value=5.4e-08  Score=93.87  Aligned_cols=193  Identities=19%  Similarity=0.135  Sum_probs=155.5

Q ss_pred             HHHHHHHHHHhhCCCCCHHHHHHHHHHHHhccCCCCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHHH
Q 015951          125 AQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQ  204 (397)
Q Consensus       125 ~~lmk~~i~~L~~~~~s~e~k~~AL~~L~~Lve~iDnA~~~~~lGGl~~Li~lL~s~~~~ir~~Aa~vLg~~aqNNp~~Q  204 (397)
                      ++-+++++..|.... ++.-+..|+-.+.......-|-.-+.+.||++.+..+|+++++.+|..|.+++.+++.+ .+.|
T Consensus        11 ~~~l~~Ll~lL~~t~-dp~i~e~al~al~n~aaf~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~-~en~   88 (254)
T PF04826_consen   11 AQELQKLLCLLESTE-DPFIQEKALIALGNSAAFPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVN-DENQ   88 (254)
T ss_pred             HHHHHHHHHHHhcCC-ChHHHHHHHHHHHhhccChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCC-hhhH
Confidence            455677777777543 56677788888888766666777788899999999999999999999999999999865 6677


Q ss_pred             HHHHHcCcHHHHHHhhcCC--CHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHH
Q 015951          205 KQVLELGALSKLMKMVKSS--FVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDL  282 (397)
Q Consensus       205 ~~vl~~g~lp~Ll~LL~s~--~~~v~~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klr~kA~~lL~~L  282 (397)
                      ..+-.  .++.+++...+.  +.+++..++.+|.+|...+. .+..+  .+.++.+.++|.++  +.++|..+..+|.+|
T Consensus        89 ~~Ik~--~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~-~~~~l--~~~i~~ll~LL~~G--~~~~k~~vLk~L~nL  161 (254)
T PF04826_consen   89 EQIKM--YIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTND-YHHML--ANYIPDLLSLLSSG--SEKTKVQVLKVLVNL  161 (254)
T ss_pred             HHHHH--HHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcc-hhhhH--HhhHHHHHHHHHcC--ChHHHHHHHHHHHHh
Confidence            77644  588888876654  35789999999999976543 24444  45899999999987  567899999999999


Q ss_pred             hhchhccCCCCcchhHHhCCcHHHHHHhccCC-ChHHHHHHHHHHHHHhcC
Q 015951          283 AKCQLENMHKVEPPLFRDRFFLKSVVDLTASA-DLDLQEKALAAIKNLLQL  332 (397)
Q Consensus       283 ~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~-d~dv~E~aL~aL~~L~~~  332 (397)
                      +.      ++.....+.....+..++.++... +.++...++..+.++...
T Consensus       162 S~------np~~~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~  206 (254)
T PF04826_consen  162 SE------NPDMTRELLSAQVLSSFLSLFNSSESKENLLRVLTFFENINEN  206 (254)
T ss_pred             cc------CHHHHHHHHhccchhHHHHHHccCCccHHHHHHHHHHHHHHHh
Confidence            85      677777888888999999999876 678889999888888754

>KOG4199 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.98  E-value=1.1e-07  Score=93.53  Aligned_cols=217  Identities=13%  Similarity=0.117  Sum_probs=170.7

Q ss_pred             HHhhCCCCCHHHHHHHHHHHHhccCC----------CCchhHHHhcCCHHHHHHhcCC-CCHHHHHHHHHHHHHHhcCCh
Q 015951          133 DDLNNSTLSLEDSQRALQELLILVEP----------IDNANDLSKLGGLSVLVGQLNH-PDTDIRKISAWILGKASQNNP  201 (397)
Q Consensus       133 ~~L~~~~~s~e~k~~AL~~L~~Lve~----------iDnA~~~~~lGGl~~Li~lL~s-~~~~ir~~Aa~vLg~~aqNNp  201 (397)
                      ..|+..+.+ +.--.+.+.+..++-+          ...|+.|.+.||+..|++.|.. -+|++-..++..|++++-+|+
T Consensus       196 ~~l~~~gk~-~~VRel~~a~r~l~~dDDiRV~fg~ah~hAr~ia~e~~l~~L~Eal~A~~dp~~L~~l~~tl~~lAVr~E  274 (461)
T KOG4199|consen  196 QVLNREGKT-RTVRELYDAIRALLTDDDIRVVFGQAHGHARTIAKEGILTALTEALQAGIDPDSLVSLSTTLKALAVRDE  274 (461)
T ss_pred             HHHcccCcc-HHHHHHHHHHHHhcCCCceeeecchhhHHHHHHHHhhhHHHHHHHHHccCCccHHHHHHHHHHHHHHHHH
Confidence            355555544 2233445666655543          3468999999999999999955 579999999999999999888


Q ss_pred             HHHHHHHHcCcHHHHHHhhcCCCH-HHH---HHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHH
Q 015951          202 LVQKQVLELGALSKLMKMVKSSFV-EEA---VKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVS  277 (397)
Q Consensus       202 ~~Q~~vl~~g~lp~Ll~LL~s~~~-~v~---~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klr~kA~~  277 (397)
                      .||. +.+.||+..|+.++++.+. ..|   +.++.-|+.+. ++......+++.||.+.++.++...++++.+-..++.
T Consensus       275 ~C~~-I~e~GGl~tl~~~i~d~n~~~~r~l~k~~lslLralA-G~DsvKs~IV~~gg~~~ii~l~~~h~~~p~Vi~~~~a  352 (461)
T KOG4199|consen  275 ICKS-IAESGGLDTLLRCIDDSNEQGNRTLAKTCLSLLRALA-GSDSVKSTIVEKGGLDKIITLALRHSDDPLVIQEVMA  352 (461)
T ss_pred             HHHH-HHHccCHHHHHHHHhhhchhhHHHHHHHHHHHHHHHh-CCCchHHHHHHhcChHHHHHHHHHcCCChHHHHHHHH
Confidence            6665 6789999999999998653 444   45677777765 5667889999999999999998765567788999999


Q ss_pred             HHHHHhhchhccCCCCcchhHHhCCcHHHHHHhccCC--ChHHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHHHH
Q 015951          278 LVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASA--DLDLQEKALAAIKNLLQLRTTEALVLKDFCGLDTALERLRQ  355 (397)
Q Consensus       278 lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~--d~dv~E~aL~aL~~L~~~~~~~r~~~~~~~gL~~~L~~Lr~  355 (397)
                      +++-|+--     .|+.-..+++.|.-...++.++..  ...+|.++.++++|++..+.+.+..+- ..|++.++..=+.
T Consensus       353 ~i~~l~LR-----~pdhsa~~ie~G~a~~avqAmkahP~~a~vQrnac~~IRNiv~rs~~~~~~~l-~~GiE~Li~~A~~  426 (461)
T KOG4199|consen  353 IISILCLR-----SPDHSAKAIEAGAADLAVQAMKAHPVAAQVQRNACNMIRNIVVRSAENRTILL-ANGIEKLIRTAKA  426 (461)
T ss_pred             HHHHHHhc-----CcchHHHHHhcchHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHhhhhccchHH-hccHHHHHHHHHh
Confidence            99999862     567777888999999999988753  668999999999999999887777777 7888888876665


Q ss_pred             HhH
Q 015951          356 QLQ  358 (397)
Q Consensus       356 ~~~  358 (397)
                      .++
T Consensus       427 ~h~  429 (461)
T KOG4199|consen  427 NHE  429 (461)
T ss_pred             cCc
Confidence            544

>KOG4199 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.96  E-value=4.2e-08  Score=96.35  Aligned_cols=173  Identities=12%  Similarity=0.124  Sum_probs=139.4

Q ss_pred             chhHHHhcCCHHHHHHhcCC-CCHHHH---HHHHHHHHHHhcCChHHHHHHHHcCcHHHHHHhhc--CCCHHHHHHHHHH
Q 015951          161 NANDLSKLGGLSVLVGQLNH-PDTDIR---KISAWILGKASQNNPLVQKQVLELGALSKLMKMVK--SSFVEEAVKALYT  234 (397)
Q Consensus       161 nA~~~~~lGGl~~Li~lL~s-~~~~ir---~~Aa~vLg~~aqNNp~~Q~~vl~~g~lp~Ll~LL~--s~~~~v~~kAl~A  234 (397)
                      ....+...||+..|++++.+ .+.+.|   ..++..|..++ .+..++..+++.|+++.++.++.  ++++.+...++.+
T Consensus       275 ~C~~I~e~GGl~tl~~~i~d~n~~~~r~l~k~~lslLralA-G~DsvKs~IV~~gg~~~ii~l~~~h~~~p~Vi~~~~a~  353 (461)
T KOG4199|consen  275 ICKSIAESGGLDTLLRCIDDSNEQGNRTLAKTCLSLLRALA-GSDSVKSTIVEKGGLDKIITLALRHSDDPLVIQEVMAI  353 (461)
T ss_pred             HHHHHHHccCHHHHHHHHhhhchhhHHHHHHHHHHHHHHHh-CCCchHHHHHHhcChHHHHHHHHHcCCChHHHHHHHHH
Confidence            34566678999999999965 556666   45666667777 46779999999999999999875  4567788888889


Q ss_pred             HHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHHhCCcHHHHHHhccCC
Q 015951          235 VSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASA  314 (397)
Q Consensus       235 LS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klr~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~  314 (397)
                      ||-++--.|.....|++.||-...++.|+.....-.+|++|+++|.|++..     ..+.+..+...| ++.|+..-+..
T Consensus       354 i~~l~LR~pdhsa~~ie~G~a~~avqAmkahP~~a~vQrnac~~IRNiv~r-----s~~~~~~~l~~G-iE~Li~~A~~~  427 (461)
T KOG4199|consen  354 ISILCLRSPDHSAKAIEAGAADLAVQAMKAHPVAAQVQRNACNMIRNIVVR-----SAENRTILLANG-IEKLIRTAKAN  427 (461)
T ss_pred             HHHHHhcCcchHHHHHhcchHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHh-----hhhccchHHhcc-HHHHHHHHHhc
Confidence            998877788989999999999999999986534556999999999999973     345566667666 67777777888


Q ss_pred             ChHHHHHHHHHHHHHhcCChHHHHHHH
Q 015951          315 DLDLQEKALAAIKNLLQLRTTEALVLK  341 (397)
Q Consensus       315 d~dv~E~aL~aL~~L~~~~~~~r~~~~  341 (397)
                      ++++...+-.||+-|-++.. .|..|.
T Consensus       428 h~tce~~akaALRDLGc~v~-lre~wt  453 (461)
T KOG4199|consen  428 HETCEAAAKAALRDLGCDVY-LREEWT  453 (461)
T ss_pred             CccHHHHHHHHHHhcCcchh-hHHHhc
Confidence            88999999999999998864 677775

>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells

Probab=98.92  E-value=9.4e-08  Score=100.72  Aligned_cols=195  Identities=17%  Similarity=0.151  Sum_probs=160.7

Q ss_pred             HHHHHHHHHhcCCCC-HHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhccCCCCch-hHHHhcCCHHHHHHhcCCCCHHHH
Q 015951          109 QMEIKELMEKLKTPS-DAQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNA-NDLSKLGGLSVLVGQLNHPDTDIR  186 (397)
Q Consensus       109 ~~~L~ea~~~~~~~~-d~~lmk~~i~~L~~~~~s~e~k~~AL~~L~~Lve~iDnA-~~~~~lGGl~~Li~lL~s~~~~ir  186 (397)
                      .+-|+..++.+.+.+ ....+.-+..-|.++  ++..|.-++..+..+++..+.+ .-+...+.++.++.+|.+++.++.
T Consensus        59 ~~iL~~~l~~~~~~~l~~~~~~~L~~gL~h~--~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i~~~L~~~d~~Va  136 (503)
T PF10508_consen   59 CDILKRLLSALSPDSLLPQYQPFLQRGLTHP--SPKVRRLALKQLGRIARHSEGAAQLLVDNELLPLIIQCLRDPDLSVA  136 (503)
T ss_pred             HHHHHHHHhccCHHHHHHHHHHHHHHHhcCC--CHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHHHHHHHHcCCcHHHH
Confidence            455666666543332 345555566666665  4677888999999988877664 445667888999999999999999


Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCC
Q 015951          187 KISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSS  266 (397)
Q Consensus       187 ~~Aa~vLg~~aqNNp~~Q~~vl~~g~lp~Ll~LL~s~~~~v~~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~  266 (397)
                      ..|+.+|..++.+.+.. +.++..+.++.|.+++...++.+|.+++..+..+..+++.......+.|-++.++..+.++ 
T Consensus       137 ~~A~~~L~~l~~~~~~~-~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~~~~~~sgll~~ll~eL~~d-  214 (503)
T PF10508_consen  137 KAAIKALKKLASHPEGL-EQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAAEAVVNSGLLDLLLKELDSD-  214 (503)
T ss_pred             HHHHHHHHHHhCCchhH-HHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHHHHHHhccHHHHHHHHhcCc-
Confidence            99999999999876544 5677888899999999987888899999999999999999999999999999999999985 


Q ss_pred             ccHHHHHHHHHHHHHHhhchhccCCCCcchhHHhCCcHHHHHHhccCC
Q 015951          267 FEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASA  314 (397)
Q Consensus       267 ~d~klr~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~  314 (397)
                       |+-+|..++-+++.|+.      .+....++.+.|+++.+++++...
T Consensus       215 -DiLvqlnalell~~La~------~~~g~~yL~~~gi~~~L~~~l~~~  255 (503)
T PF10508_consen  215 -DILVQLNALELLSELAE------TPHGLQYLEQQGIFDKLSNLLQDS  255 (503)
T ss_pred             -cHHHHHHHHHHHHHHHc------ChhHHHHHHhCCHHHHHHHHHhcc
Confidence             88899999999999995      456688899999999999998764

26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding

>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]

Probab=98.89  E-value=3.3e-08  Score=103.76  Aligned_cols=182  Identities=14%  Similarity=0.102  Sum_probs=142.6

Q ss_pred             HHHHhccCCCCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCcHHHHHHhhcCCCHHHHH
Q 015951          150 QELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAV  229 (397)
Q Consensus       150 ~~L~~Lve~iDnA~~~~~lGGl~~Li~lL~s~~~~ir~~Aa~vLg~~aqNNp~~Q~~vl~~g~lp~Ll~LL~s~~~~v~~  229 (397)
                      ..+.+..+ ++++..+-..--...+.......+...+..|+-|+-+++..-...+.-+-...+..+|++++..++..+..
T Consensus       359 ~~~~~~~~-i~~~k~~l~~~t~~~l~~~~~~kd~~~~aaa~l~~~s~srsV~aL~tg~~~~dv~~plvqll~dp~~~i~~  437 (678)
T KOG1293|consen  359 NHLEYGLE-ISLKKEILETTTESHLMCLPPIKDHDFVAAALLCLKSFSRSVSALRTGLKRNDVAQPLVQLLMDPEIMIMG  437 (678)
T ss_pred             hhhhhhcc-hhHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHcCCccchhHHHHHHHhhCcchhHHH
Confidence            33444444 77777776554444444444567889999999999888876554555444557899999999887788999


Q ss_pred             HHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHHhCCcHHHHHH
Q 015951          230 KALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVD  309 (397)
Q Consensus       230 kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klr~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~  309 (397)
                      .+++||.|++-.+.+-+..|+..||+..|...+.++  +..+|.++.|+|++++.+    .++..+..+...-....++.
T Consensus       438 ~~lgai~NlVmefs~~kskfl~~ngId~l~s~~~~~--~~n~r~~~~~~Lr~l~f~----~de~~k~~~~~ki~a~~i~~  511 (678)
T KOG1293|consen  438 ITLGAICNLVMEFSNLKSKFLRNNGIDILESMLTDP--DFNSRANSLWVLRHLMFN----CDEEEKFQLLAKIPANLILD  511 (678)
T ss_pred             HHHHHHHHHHhhcccHHHHHHHcCcHHHHHHHhcCC--CchHHHHHHHHHHHHHhc----chHHHHHHHHHHhhHHHHHH
Confidence            999999999999999999999999999999999987  566899999999999973    44444445555555667788


Q ss_pred             hccCCChHHHHHHHHHHHHHhcCChHHHH
Q 015951          310 LTASADLDLQEKALAAIKNLLQLRTTEAL  338 (397)
Q Consensus       310 lL~~~d~dv~E~aL~aL~~L~~~~~~~r~  338 (397)
                      +.+.+|..|||+++..|+||+++..+.-.
T Consensus       512 l~nd~d~~Vqeq~fqllRNl~c~~~~svd  540 (678)
T KOG1293|consen  512 LINDPDWAVQEQCFQLLRNLTCNSRKSVD  540 (678)
T ss_pred             HHhCCCHHHHHHHHHHHHHhhcCcHHHHH
Confidence            88999999999999999999998554444

>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments

Probab=98.82  E-value=2.2e-06  Score=88.23  Aligned_cols=245  Identities=16%  Similarity=0.123  Sum_probs=170.3

Q ss_pred             HHHHHHHHHHhhCCCCCHHHHHHHHHHHHhccCCC-CchhHHHhc-----CCHHHHHHhcCCCCHHHHHHHHHHHHHHhc
Q 015951          125 AQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPI-DNANDLSKL-----GGLSVLVGQLNHPDTDIRKISAWILGKASQ  198 (397)
Q Consensus       125 ~~lmk~~i~~L~~~~~s~e~k~~AL~~L~~Lve~i-DnA~~~~~l-----GGl~~Li~lL~s~~~~ir~~Aa~vLg~~aq  198 (397)
                      ....+-.+..+...+ .++...-.|--+.+++... .-+.-|+..     .-+.+++.+|++++.-|...|+.+++.+++
T Consensus        52 ~~y~~~~l~ll~~~~-~~d~vqyvL~Li~dll~~~~~~~~~f~~~~~~~~~~~~~fl~lL~~~d~~i~~~a~~iLt~l~~  130 (429)
T cd00256          52 GQYVKTFVNLLSQID-KDDTVRYVLTLIDDMLQEDDTRVKLFHDDALLKKKTWEPFFNLLNRQDQFIVHMSFSILAKLAC  130 (429)
T ss_pred             HHHHHHHHHHHhccC-cHHHHHHHHHHHHHHHHhchHHHHHHHHHhhccccchHHHHHHHcCCchhHHHHHHHHHHHHHh
Confidence            566666777776543 3455556666666666543 345667765     468899999999999999999999999987


Q ss_pred             CChHHHHHHHHcCcHHHHHHhhcCC-CHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHH
Q 015951          199 NNPLVQKQVLELGALSKLMKMVKSS-FVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVS  277 (397)
Q Consensus       199 NNp~~Q~~vl~~g~lp~Ll~LL~s~-~~~v~~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klr~kA~~  277 (397)
                      ..+.........-.++.|...+++. +...+.-++.+++.++|. +..+..|.+++|++.|..+|+....+..++-.+++
T Consensus       131 ~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~-~~~R~~f~~~~~v~~L~~~L~~~~~~~Ql~Y~~ll  209 (429)
T cd00256         131 FGLAKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRV-DEYRFAFVLADGVPTLVKLLSNATLGFQLQYQSIF  209 (429)
T ss_pred             cCccccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCC-chHHHHHHHccCHHHHHHHHhhccccHHHHHHHHH
Confidence            5443222111111334555666653 345677788999999986 45678899999999999999865446679999999


Q ss_pred             HHHHHhhchhccCCCCcchhHHhCCcHHHHHHhccCC-ChHHHHHHHHHHHHHhcCCh------HHHHHHHhcCChHHHH
Q 015951          278 LVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASA-DLDLQEKALAAIKNLLQLRT------TEALVLKDFCGLDTAL  350 (397)
Q Consensus       278 lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~-d~dv~E~aL~aL~~L~~~~~------~~r~~~~~~~gL~~~L  350 (397)
                      +++-|+.+      +...+.+...++++.++++++.. -..+..-++.++.||+..+.      .+...+- .+|+.+.+
T Consensus       210 ~lWlLSF~------~~~~~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~mv-~~~l~~~l  282 (429)
T cd00256         210 CIWLLTFN------PHAAEVLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLISKRVDREVKKTAALQMV-QCKVLKTL  282 (429)
T ss_pred             HHHHHhcc------HHHHHhhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcccccchhhhHHHHHH-HcChHHHH
Confidence            99998863      33555667789999999999764 56888888999999998531      1223333 56887777


Q ss_pred             HHHHHHhHHhhhhhhhhhhHHhHHHHHHHHHHHH
Q 015951          351 ERLRQQLQEVMLEEDQRDYAMDVEALRREVELIF  384 (397)
Q Consensus       351 ~~Lr~~~~~l~~~e~~~~~~~~l~~~~~e~~~~~  384 (397)
                      ..|..+   -..|+   |-.+|++.+.+..+..+
T Consensus       283 ~~L~~r---k~~De---dL~edl~~L~e~L~~~~  310 (429)
T cd00256         283 QSLEQR---KYDDE---DLTDDLKFLTEELKNSV  310 (429)
T ss_pred             HHHhcC---CCCcH---HHHHHHHHHHHHHHHHH
Confidence            766544   22344   34556777777666664

The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.

>PF05804 KAP: Kinesin-associated protein (KAP)

Probab=98.77  E-value=9.4e-07  Score=95.94  Aligned_cols=221  Identities=19%  Similarity=0.171  Sum_probs=170.0

Q ss_pred             HHHHHHHhhCCCCCHHHHHHHHHHHHhccCCCCchhHHHhcCCHHHHHHh-cCCCCHHHHHHHHHHHHHHhcCChHHHHH
Q 015951          128 IQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQ-LNHPDTDIRKISAWILGKASQNNPLVQKQ  206 (397)
Q Consensus       128 mk~~i~~L~~~~~s~e~k~~AL~~L~~Lve~iDnA~~~~~lGGl~~Li~l-L~s~~~~ir~~Aa~vLg~~aqNNp~~Q~~  206 (397)
                      +..+++.+.+.. +.+....++.-+-++..+..||.-++.-||++.|+.. ++..++-    -..+|.+++++.+..|..
T Consensus       413 Ip~L~~~Ll~~~-~~~v~~eliaL~iNLa~~~rnaqlm~~g~gL~~L~~ra~~~~D~l----LlKlIRNiS~h~~~~k~~  487 (708)
T PF05804_consen  413 IPQLMQMLLENS-EEEVQLELIALLINLALNKRNAQLMCEGNGLQSLMKRALKTRDPL----LLKLIRNISQHDGPLKEL  487 (708)
T ss_pred             HHHHHHHHHhCC-CccccHHHHHHHHHHhcCHHHHHHHHhcCcHHHHHHHHHhcccHH----HHHHHHHHHhcCchHHHH
Confidence            344455444332 2233445667777888899999999999999999975 4555543    447999999999888888


Q ss_pred             HHHcCcHHHHHHhhcCCC-HHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhc
Q 015951          207 VLELGALSKLMKMVKSSF-VEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKC  285 (397)
Q Consensus       207 vl~~g~lp~Ll~LL~s~~-~~v~~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klr~kA~~lL~~L~~~  285 (397)
                      |.+  .+..|+.++.+++ ++....++..|+|+.-.+......+.+++-++.|...|..+..+..+...++-+++.++. 
T Consensus       488 f~~--~i~~L~~~v~~~~~ee~~vE~LGiLaNL~~~~ld~~~ll~~~~llp~L~~~L~~g~~~dDl~LE~Vi~~gtla~-  564 (708)
T PF05804_consen  488 FVD--FIGDLAKIVSSGDSEEFVVECLGILANLTIPDLDWAQLLQEYNLLPWLKDLLKPGASEDDLLLEVVILLGTLAS-  564 (708)
T ss_pred             HHH--HHHHHHHHhhcCCcHHHHHHHHHHHHhcccCCcCHHHHHHhCCHHHHHHHHhCCCCCChHHHHHHHHHHHHHHC-
Confidence            875  7999999998754 578899999999997655444444556899999999998664445588899999999985 


Q ss_pred             hhccCCCCcchhHHhCCcHHHHHHhccC--CChHHHHHHHHHHHHHhcCChHHHHHHHhcCCh-HHHHHHHHHHhHHhhh
Q 015951          286 QLENMHKVEPPLFRDRFFLKSVVDLTAS--ADLDLQEKALAAIKNLLQLRTTEALVLKDFCGL-DTALERLRQQLQEVML  362 (397)
Q Consensus       286 ~l~~~~~~~~~~l~~~g~v~~Lv~lL~~--~d~dv~E~aL~aL~~L~~~~~~~r~~~~~~~gL-~~~L~~Lr~~~~~l~~  362 (397)
                           ++.....+.+.|+++.++++|+.  +|.++.-+.+.++.+++.+.+ .|+.+-...++ .-++..++.++.+...
T Consensus       565 -----d~~~A~lL~~sgli~~Li~LL~~kqeDdE~VlQil~~f~~ll~h~~-tr~~ll~~~~~~~ylidL~~d~N~~ir~  638 (708)
T PF05804_consen  565 -----DPECAPLLAKSGLIPTLIELLNAKQEDDEIVLQILYVFYQLLFHEE-TREVLLKETEIPAYLIDLMHDKNAEIRK  638 (708)
T ss_pred             -----CHHHHHHHHhCChHHHHHHHHHhhCchHHHHHHHHHHHHHHHcChH-HHHHHHhccchHHHHHHHhcCCCHHHHH
Confidence                 67788888999999999999976  478999999999999999976 67766444444 5677877777766543

>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]

Probab=98.71  E-value=2.8e-06  Score=91.56  Aligned_cols=241  Identities=16%  Similarity=0.150  Sum_probs=176.2

Q ss_pred             CCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhccCCCCchhH-----HHhcCCHHHHHHhcCC-CCHHHHHHHHHHHH
Q 015951          121 TPSDAQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNAND-----LSKLGGLSVLVGQLNH-PDTDIRKISAWILG  194 (397)
Q Consensus       121 ~~~d~~lmk~~i~~L~~~~~s~e~k~~AL~~L~~Lve~iDnA~~-----~~~lGGl~~Li~lL~s-~~~~ir~~Aa~vLg  194 (397)
                      +.+.--.||+++.-|.+.+ ++-..+.|+-+|.+   .+-+.|.     |----.+|.|+.+|++ .+.+|.-.||++|.
T Consensus       162 ~~sasSk~kkLL~gL~~~~-Des~Qleal~Elce---~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRalt  237 (1051)
T KOG0168|consen  162 GSSASSKAKKLLQGLQAES-DESQQLEALTELCE---MLSMGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALT  237 (1051)
T ss_pred             cccchHHHHHHHHhccccC-ChHHHHHHHHHHHH---HHhhcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHH
Confidence            3456668999999998875 54445455444443   3222221     1112356788899977 57999999999999


Q ss_pred             HHhcCChHHHHHHHHcCcHHHHHHhh-cCCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHH
Q 015951          195 KASQNNPLVQKQVLELGALSKLMKMV-KSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHR  273 (397)
Q Consensus       195 ~~aqNNp~~Q~~vl~~g~lp~Ll~LL-~s~~~~v~~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klr~  273 (397)
                      .++.--|..-..++++++||.|+.-| .-+-..+++.++.||=-|.|.||.   +++++||+...+..|.=-  ..-.|+
T Consensus       238 yl~evlP~S~a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H~~---AiL~AG~l~a~LsylDFF--Si~aQR  312 (1051)
T KOG0168|consen  238 YLCEVLPRSSAIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRHPK---AILQAGALSAVLSYLDFF--SIHAQR  312 (1051)
T ss_pred             HHHhhccchhheeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhccH---HHHhcccHHHHHHHHHHH--HHHHHH
Confidence            99999999999999999999999554 445578999999999999999985   777899999999888632  345899


Q ss_pred             HHHHHHHHHhhchhccCCCCcchhHHhCCcHHHHHHhccCCChHHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHH
Q 015951          274 KAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLRTTEALVLKDFCGLDTALERL  353 (397)
Q Consensus       274 kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~dv~E~aL~aL~~L~~~~~~~r~~~~~~~gL~~~L~~L  353 (397)
                      +|.....|.|.+    ..++....+.  ..++.|..+|...|..+.|.++.|+..++.......+.+.+-|.. .+++..
T Consensus       313 ~AlaiaaN~Cks----i~sd~f~~v~--ealPlL~~lLs~~D~k~ies~~ic~~ri~d~f~h~~~kLdql~s~-dLi~~~  385 (1051)
T KOG0168|consen  313 VALAIAANCCKS----IRSDEFHFVM--EALPLLTPLLSYQDKKPIESVCICLTRIADGFQHGPDKLDQLCSH-DLITNI  385 (1051)
T ss_pred             HHHHHHHHHHhc----CCCccchHHH--HHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccChHHHHHHhch-hHHHHH
Confidence            999999999974    4555555554  368899999999999999999999999997755455566544443 234444


Q ss_pred             HHHhHHhhhhhhhhhhHHhHHHHH
Q 015951          354 RQQLQEVMLEEDQRDYAMDVEALR  377 (397)
Q Consensus       354 r~~~~~l~~~e~~~~~~~~l~~~~  377 (397)
                      .+-+.--..--....|+.++--+.
T Consensus       386 ~qLlsvt~t~Ls~~~~~~vIrmls  409 (1051)
T KOG0168|consen  386 QQLLSVTPTILSNGTYTGVIRMLS  409 (1051)
T ss_pred             HHHHhcCcccccccchhHHHHHHH
Confidence            444332233445777887764443

>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]

Probab=98.37  E-value=4.8e-06  Score=93.67  Aligned_cols=212  Identities=15%  Similarity=0.118  Sum_probs=167.3

Q ss_pred             HHHHHHhcc-CCCCchhHHHhcCC-HHHHHHhcCCCCHHHHHHHHHHHHHHhcCChH-HHHHHHHcCcHHHHHHhhcC-C
Q 015951          148 ALQELLILV-EPIDNANDLSKLGG-LSVLVGQLNHPDTDIRKISAWILGKASQNNPL-VQKQVLELGALSKLMKMVKS-S  223 (397)
Q Consensus       148 AL~~L~~Lv-e~iDnA~~~~~lGG-l~~Li~lL~s~~~~ir~~Aa~vLg~~aqNNp~-~Q~~vl~~g~lp~Ll~LL~s-~  223 (397)
                      |+-.|-+|. -++.|...+|...| +..||..|.+...++..-.+.+|.++.=+-.. .+..+.+.|-+-.|....-. .
T Consensus       371 a~MALTNLTFGDv~NKa~LCs~rgfMeavVAQL~s~peeL~QV~AsvLRNLSWRAD~nmKkvLrE~GsVtaLa~~al~~~  450 (2195)
T KOG2122|consen  371 AGMALTNLTFGDVANKATLCSQRGFMEAVVAQLISAPEELLQVYASVLRNLSWRADSNMKKVLRETGSVTALAACALRNK  450 (2195)
T ss_pred             HHHHhhccccccccchhhhhhhhhHHHHHHHHHhcChHHHHHHHHHHHHhccccccccHHHHHHhhhhHHHHHHHHHHhc
Confidence            444555554 56778888998855 77888999999999999999999999866444 45556677888888876543 3


Q ss_pred             CHHHHHHHHHHHHHHhcCChhcHHHHHhc-CcHHHHHHhhcCC--CccHHHHHHHHHHHHHHhhchhccCCCCcchhHHh
Q 015951          224 FVEEAVKALYTVSSLIRNNLAGQEMFYVE-AGDLMLQDILGNS--SFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRD  300 (397)
Q Consensus       224 ~~~v~~kAl~ALS~LiR~~~~~~~~f~~~-gGi~~L~~lL~s~--~~d~klr~kA~~lL~~L~~~~l~~~~~~~~~~l~~  300 (397)
                      .+..-+..|.||-||..|+..+...|+.- |.+.+|+..|.-.  +...++...+-..|.|..+..  ...+..++.+.+
T Consensus       451 kEsTLKavLSALWNLSAHcteNKA~iCaVDGALaFLVg~LSY~~qs~tLaIIEsaGGILRNVSS~I--At~E~yRQILR~  528 (2195)
T KOG2122|consen  451 KESTLKAVLSALWNLSAHCTENKAEICAVDGALAFLVGTLSYEGQSNTLAIIESAGGILRNVSSLI--ATCEDYRQILRR  528 (2195)
T ss_pred             ccchHHHHHHHHhhhhhcccccchhhhcccchHHHHHhhccccCCcchhhhhhcCccHHHHHHhHh--hccchHHHHHHH
Confidence            34455667888888888999999999875 7799999999743  445677778888888876532  345678899999


Q ss_pred             CCcHHHHHHhccCCChHHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHHHHHhHHhh
Q 015951          301 RFFLKSVVDLTASADLDLQEKALAAIKNLLQLRTTEALVLKDFCGLDTALERLRQQLQEVM  361 (397)
Q Consensus       301 ~g~v~~Lv~lL~~~d~dv~E~aL~aL~~L~~~~~~~r~~~~~~~gL~~~L~~Lr~~~~~l~  361 (397)
                      ++++..|.++|++....++.+++.+|+||..-+....+.+.+.+...-+.+.+++.+....
T Consensus       529 ~NCLq~LLQ~LKS~SLTiVSNaCGTLWNLSAR~p~DQq~LwD~gAv~mLrnLIhSKhkMIa  589 (2195)
T KOG2122|consen  529 HNCLQTLLQHLKSHSLTIVSNACGTLWNLSARSPEDQQMLWDDGAVPMLRNLIHSKHKMIA  589 (2195)
T ss_pred             hhHHHHHHHHhhhcceEEeecchhhhhhhhcCCHHHHHHHHhcccHHHHHHHHhhhhhhhh
Confidence            9999999999999999999999999999999988888888878887777777777766543

>PRK09687 putative lyase; Provisional

Probab=98.27  E-value=3e-05  Score=75.97  Aligned_cols=169  Identities=10%  Similarity=0.030  Sum_probs=89.6

Q ss_pred             HHHHHHHhhCCCCCHHHHHHHHHHHHhccCCCCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHHHHHH
Q 015951          128 IQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQV  207 (397)
Q Consensus       128 mk~~i~~L~~~~~s~e~k~~AL~~L~~Lve~iDnA~~~~~lGGl~~Li~lL~s~~~~ir~~Aa~vLg~~aqNNp~~Q~~v  207 (397)
                      +..+++.|.++  +...+..|...|..+    .      .-..++.+..+++++++.+|..|+++||.+-... ..    
T Consensus        25 ~~~L~~~L~d~--d~~vR~~A~~aL~~~----~------~~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~-~~----   87 (280)
T PRK09687         25 DDELFRLLDDH--NSLKRISSIRVLQLR----G------GQDVFRLAIELCSSKNPIERDIGADILSQLGMAK-RC----   87 (280)
T ss_pred             HHHHHHHHhCC--CHHHHHHHHHHHHhc----C------cchHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCc-cc----
Confidence            45566666555  345666666666432    1      1124556667777777788888887777764211 11    


Q ss_pred             HHcCcHHHHHHh-hcCCCHHHHHHHHHHHHHHhcCChhcHHHHH--------------------------hcCcHHHHHH
Q 015951          208 LELGALSKLMKM-VKSSFVEEAVKALYTVSSLIRNNLAGQEMFY--------------------------VEAGDLMLQD  260 (397)
Q Consensus       208 l~~g~lp~Ll~L-L~s~~~~v~~kAl~ALS~LiR~~~~~~~~f~--------------------------~~gGi~~L~~  260 (397)
                       ....+|.|..+ +++++..||..|+.+|+.+....+.....++                          ....++.|+.
T Consensus        88 -~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~~~ai~~L~~  166 (280)
T PRK09687         88 -QDNVFNILNNLALEDKSACVRASAINATGHRCKKNPLYSPKIVEQSQITAFDKSTNVRFAVAFALSVINDEAAIPLLIN  166 (280)
T ss_pred             -hHHHHHHHHHHHhcCCCHHHHHHHHHHHhcccccccccchHHHHHHHHHhhCCCHHHHHHHHHHHhccCCHHHHHHHHH
Confidence             11245666666 4444566777777777766322210000000                          0113455555


Q ss_pred             hhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHHhCCcHHHHHHhccCCChHHHHHHHHHHHHHh
Q 015951          261 ILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLL  330 (397)
Q Consensus       261 lL~s~~~d~klr~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~dv~E~aL~aL~~L~  330 (397)
                      +|.++  +..+|..|++.|..+..              .....++.|+.+|...+.+|+..|+.+|..+-
T Consensus       167 ~L~d~--~~~VR~~A~~aLg~~~~--------------~~~~~~~~L~~~L~D~~~~VR~~A~~aLg~~~  220 (280)
T PRK09687        167 LLKDP--NGDVRNWAAFALNSNKY--------------DNPDIREAFVAMLQDKNEEIRIEAIIGLALRK  220 (280)
T ss_pred             HhcCC--CHHHHHHHHHHHhcCCC--------------CCHHHHHHHHHHhcCCChHHHHHHHHHHHccC
Confidence            55544  22355555555555421              01235566777777777777777776666543

>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1

Probab=98.26  E-value=1.3e-05  Score=77.16  Aligned_cols=103  Identities=13%  Similarity=0.096  Sum_probs=93.3

Q ss_pred             CHHHHHHHHHHHHHHhcCChHHHHHHHHcCcHHHHHHhhcC-CCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHH
Q 015951          182 DTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKS-SFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQD  260 (397)
Q Consensus       182 ~~~ir~~Aa~vLg~~aqNNp~~Q~~vl~~g~lp~Ll~LL~s-~~~~v~~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~  260 (397)
                      +..+...|..+|.-+|-.+|.+|..|....++..|+.+|+. .++.++..++.+|.+++.++|.++..|-+.+|+..++.
T Consensus       104 ~~~li~~aL~vLQGl~LLHp~Sr~lF~r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~N~r~FE~~~Gl~~v~~  183 (257)
T PF08045_consen  104 NDSLIALALRVLQGLCLLHPPSRKLFHREQNMELLLDLLSPSNPPAIQSACLDTLVCILLDSPENQRDFEELNGLSTVCS  183 (257)
T ss_pred             hhHHHHHHHHHHHHHHHcCchHHHHHhhhhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcChHHHHHHHHhCCHHHHHH
Confidence            45567889999999999999999999999999999999954 45789999999999999999999999999999999999


Q ss_pred             hhcCCCccHHHHHHHHHHHHHHhh
Q 015951          261 ILGNSSFEIRLHRKAVSLVGDLAK  284 (397)
Q Consensus       261 lL~s~~~d~klr~kA~~lL~~L~~  284 (397)
                      ++++.+.+..+|.|.+-+|+-...
T Consensus       184 llk~~~~~~~~r~K~~EFL~fyl~  207 (257)
T PF08045_consen  184 LLKSKSTDRELRLKCIEFLYFYLM  207 (257)
T ss_pred             HHccccccHHHhHHHHHHHHHHHc
Confidence            999988888899999888776654

Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].

>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.26  E-value=9.6e-05  Score=79.55  Aligned_cols=204  Identities=22%  Similarity=0.234  Sum_probs=162.2

Q ss_pred             HHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhccCCCC------c-----------hhHHHhc-CCHHHHHHhcCCCCHHH
Q 015951          124 DAQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPID------N-----------ANDLSKL-GGLSVLVGQLNHPDTDI  185 (397)
Q Consensus       124 d~~lmk~~i~~L~~~~~s~e~k~~AL~~L~~Lve~iD------n-----------A~~~~~l-GGl~~Li~lL~s~~~~i  185 (397)
                      -+.-|+-+|.+|...-.++|-...+|+.+..++..-|      +           |..|++. +-+..|+.++..-+-.|
T Consensus        59 ga~Gmk~li~vL~~D~~D~E~ik~~LdTl~il~~~dd~~~v~dds~qsdd~g~~iae~fik~qd~I~lll~~~e~~DF~V  138 (970)
T KOG0946|consen   59 GAQGMKPLIQVLQRDYMDPEIIKYALDTLLILTSHDDSPEVMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSLEEFDFHV  138 (970)
T ss_pred             HHcccHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCcchhhcccchhhhHHHHHHHHHHHcCchhHHHHHHHHHhhchhh
Confidence            3455888999998877787877888998888775432      2           4556666 45777789999999999


Q ss_pred             HHHHHHHHHHHhcCC-hHHHHHHHHc-CcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhc
Q 015951          186 RKISAWILGKASQNN-PLVQKQVLEL-GALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILG  263 (397)
Q Consensus       186 r~~Aa~vLg~~aqNN-p~~Q~~vl~~-g~lp~Ll~LL~s~~~~v~~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~  263 (397)
                      |..|...|.++..+- +++|++++.. -+|.+|+.+|.+.-+.+|-.|++-|+.++|+++..|+.+.=.|.+.-|..++.
T Consensus       139 R~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~DsrE~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIe  218 (970)
T KOG0946|consen  139 RLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLLRDSREPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIE  218 (970)
T ss_pred             hhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHhhhhhhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHH
Confidence            999999999988764 5688888865 68999999999988889999999999999999988887777899999999987


Q ss_pred             CCC--ccHHHHHHHHHHHHHHhhchhccCCCCcchhHHhCCcHHHHHHhccCC---C----------hHHHHHHHHHHHH
Q 015951          264 NSS--FEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASA---D----------LDLQEKALAAIKN  328 (397)
Q Consensus       264 s~~--~d~klr~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~---d----------~dv~E~aL~aL~~  328 (397)
                      ...  +.--+...+++++.+|..     .+......|.+.++++.|..+|..+   |          ..-.-.+|.+++.
T Consensus       219 eEGg~dGgIVveDCL~ll~NLLK-----~N~SNQ~~FrE~~~i~rL~klL~~f~~~d~Ev~~W~~Qrv~Nv~~~Lqivr~  293 (970)
T KOG0946|consen  219 EEGGLDGGIVVEDCLILLNNLLK-----NNISNQNFFREGSYIPRLLKLLSVFEFGDGEVFGWSTQRVQNVIEALQIVRS  293 (970)
T ss_pred             hcCCCCCcchHHHHHHHHHHHHh-----hCcchhhHHhccccHHHHHhhcCcccccCcccccccHHHHHHHHHHHHHHHH
Confidence            431  222378899999999996     3677888999999999999988753   2          1223456777777


Q ss_pred             HhcC
Q 015951          329 LLQL  332 (397)
Q Consensus       329 L~~~  332 (397)
                      |+.-
T Consensus       294 lVsP  297 (970)
T KOG0946|consen  294 LVSP  297 (970)
T ss_pred             hcCC
Confidence            7764

>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]

Probab=98.23  E-value=1.4e-05  Score=85.85  Aligned_cols=135  Identities=15%  Similarity=0.107  Sum_probs=113.7

Q ss_pred             cHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCC
Q 015951          212 ALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMH  291 (397)
Q Consensus       212 ~lp~Ll~LL~s~~~~v~~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klr~kA~~lL~~L~~~~l~~~~  291 (397)
                      -+|..+++|.+..+.++..|.+-|--+++++..+...+.+.|||+.|+.+|.++  ...+++.|++++.||+..   ..+
T Consensus       234 ~lpe~i~mL~~q~~~~qsnaaaylQHlcfgd~~ik~~vrqlggI~kLv~Ll~~~--~~evq~~acgaLRNLvf~---~~~  308 (717)
T KOG1048|consen  234 TLPEVISMLMSQDPSVQSNAAAYLQHLCFGDNKIKSRVRQLGGIPKLVALLDHR--NDEVQRQACGALRNLVFG---KST  308 (717)
T ss_pred             ccHHHHHHHhccChhhhHHHHHHHHHHHhhhHHHHHHHHHhccHHHHHHHhcCC--cHHHHHHHHHHHHhhhcc---cCC
Confidence            478899999999999999999999999999999999999999999999999987  446899999999999975   234


Q ss_pred             CCcchhHHhCCcHHHHHHhccC-CChHHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHHHHHh
Q 015951          292 KVEPPLFRDRFFLKSVVDLTAS-ADLDLQEKALAAIKNLLQLRTTEALVLKDFCGLDTALERLRQQL  357 (397)
Q Consensus       292 ~~~~~~l~~~g~v~~Lv~lL~~-~d~dv~E~aL~aL~~L~~~~~~~r~~~~~~~gL~~~L~~Lr~~~  357 (397)
                      .+.+-.+.+++.++.++.+|+. .|.+++|.+...|+||.+.. .+...+.     .+.|..|..+.
T Consensus       309 ~~NKlai~~~~Gv~~l~~~Lr~t~D~ev~e~iTg~LWNLSS~D-~lK~~ii-----~~al~tLt~~v  369 (717)
T KOG1048|consen  309 DSNKLAIKELNGVPTLVRLLRHTQDDEVRELITGILWNLSSND-ALKMLII-----TSALSTLTDNV  369 (717)
T ss_pred             cccchhhhhcCChHHHHHHHHhhcchHHHHHHHHHHhcccchh-HHHHHHH-----HHHHHHHHHhh
Confidence            4677788999999999999997 58899999999999999873 3444333     55566665543

>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]

Probab=98.23  E-value=1.2e-05  Score=75.49  Aligned_cols=186  Identities=16%  Similarity=0.157  Sum_probs=118.6

Q ss_pred             hCCCCCHHHHHHHHHHHHhccCCC---CchhHHHhc--CCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHHHHHHHHc
Q 015951          136 NNSTLSLEDSQRALQELLILVEPI---DNANDLSKL--GGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLEL  210 (397)
Q Consensus       136 ~~~~~s~e~k~~AL~~L~~Lve~i---DnA~~~~~l--GGl~~Li~lL~s~~~~ir~~Aa~vLg~~aqNNp~~Q~~vl~~  210 (397)
                      .+.+.+=+.+..|++.|..++...   +....|...  .-+..++..+++....|-..|+.+++.++..-...-+.+.+ 
T Consensus        15 ~~~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~~~-   93 (228)
T PF12348_consen   15 KESESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFEPYAD-   93 (228)
T ss_dssp             HHT-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGHHHHH-
T ss_pred             cCCccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHH-
Confidence            455567788999999999988654   444444332  34556777888888899999999999999764333333322 


Q ss_pred             CcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccC
Q 015951          211 GALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENM  290 (397)
Q Consensus       211 g~lp~Ll~LL~s~~~~v~~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klr~kA~~lL~~L~~~~l~~~  290 (397)
                      ..+|.|++.+.+++..++..|..+|-.++.+.+..... +    ...+...+.++  +..+|..++..+..++..     
T Consensus        94 ~~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~~~~~-~----~~~l~~~~~~K--n~~vR~~~~~~l~~~l~~-----  161 (228)
T PF12348_consen   94 ILLPPLLKKLGDSKKFIREAANNALDAIIESCSYSPKI-L----LEILSQGLKSK--NPQVREECAEWLAIILEK-----  161 (228)
T ss_dssp             HHHHHHHHGGG---HHHHHHHHHHHHHHHTTS-H--HH-H----HHHHHHHTT-S---HHHHHHHHHHHHHHHTT-----
T ss_pred             HHHHHHHHHHccccHHHHHHHHHHHHHHHHHCCcHHHH-H----HHHHHHHHhCC--CHHHHHHHHHHHHHHHHH-----
Confidence            47999999999988889999999999999876611111 1    34556666666  567899999999988753     


Q ss_pred             CCCcchhHHh----CCcHHHHHHhccCCChHHHHHHHHHHHHHhcCCh
Q 015951          291 HKVEPPLFRD----RFFLKSVVDLTASADLDLQEKALAAIKNLLQLRT  334 (397)
Q Consensus       291 ~~~~~~~l~~----~g~v~~Lv~lL~~~d~dv~E~aL~aL~~L~~~~~  334 (397)
                      .+.....+..    ..+++.+...+...++++|+.|-.++..+.+.-+
T Consensus       162 ~~~~~~~l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~~  209 (228)
T PF12348_consen  162 WGSDSSVLQKSAFLKQLVKALVKLLSDADPEVREAARECLWALYSHFP  209 (228)
T ss_dssp             -----GGG--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH-
T ss_pred             ccchHhhhcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCC
Confidence            2211222222    3477788888999999999999999999987643

The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.

>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless

Probab=98.19  E-value=4.1e-06  Score=57.82  Aligned_cols=41  Identities=22%  Similarity=0.382  Sum_probs=38.6

Q ss_pred             ChHHHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhc
Q 015951          200 NPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIR  240 (397)
Q Consensus       200 Np~~Q~~vl~~g~lp~Ll~LL~s~~~~v~~kAl~ALS~LiR  240 (397)
                      ||+.++.+++.|++|+|+++|++++.+++..|+|||++|++
T Consensus         1 ~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~~   41 (41)
T PF00514_consen    1 SPENKQAIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNLAA   41 (41)
T ss_dssp             SHHHHHHHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence            57889999999999999999999999999999999999974

Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....

>PRK09687 putative lyase; Provisional

Probab=98.19  E-value=2.7e-05  Score=76.29  Aligned_cols=157  Identities=12%  Similarity=0.051  Sum_probs=104.4

Q ss_pred             CHHHHHHHHHHHHhccCCCCchhHHHhcCCHHHHHHh-cCCCCHHHHHHHHHHHHHHhcC-------------------C
Q 015951          141 SLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQ-LNHPDTDIRKISAWILGKASQN-------------------N  200 (397)
Q Consensus       141 s~e~k~~AL~~L~~Lve~iDnA~~~~~lGGl~~Li~l-L~s~~~~ir~~Aa~vLg~~aqN-------------------N  200 (397)
                      ++..|..|...|.++-..-. .    .-..++.|..+ ++.+++.||..|+.+||.++..                   +
T Consensus        67 d~~vR~~A~~aLg~lg~~~~-~----~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~D~~  141 (280)
T PRK09687         67 NPIERDIGADILSQLGMAKR-C----QDNVFNILNNLALEDKSACVRASAINATGHRCKKNPLYSPKIVEQSQITAFDKS  141 (280)
T ss_pred             CHHHHHHHHHHHHhcCCCcc-c----hHHHHHHHHHHHhcCCCHHHHHHHHHHHhcccccccccchHHHHHHHHHhhCCC
Confidence            45667777777766433211 0    01234555555 5667777888888777776432                   2


Q ss_pred             hHHHHHHHHc-------CcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHH
Q 015951          201 PLVQKQVLEL-------GALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHR  273 (397)
Q Consensus       201 p~~Q~~vl~~-------g~lp~Ll~LL~s~~~~v~~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klr~  273 (397)
                      +.++..+...       .+++.|+.+|++++..+|..|+++|+.+--+++         ..++.|+.+|.+.  +..+|.
T Consensus       142 ~~VR~~a~~aLg~~~~~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~~~---------~~~~~L~~~L~D~--~~~VR~  210 (280)
T PRK09687        142 TNVRFAVAFALSVINDEAAIPLLINLLKDPNGDVRNWAAFALNSNKYDNP---------DIREAFVAMLQDK--NEEIRI  210 (280)
T ss_pred             HHHHHHHHHHHhccCCHHHHHHHHHHhcCCCHHHHHHHHHHHhcCCCCCH---------HHHHHHHHHhcCC--ChHHHH
Confidence            2333333321       368889999998888899999999998821121         4678899999877  556899


Q ss_pred             HHHHHHHHHhhchhccCCCCcchhHHhCCcHHHHHHhccCCChHHHHHHHHHHHHHhc
Q 015951          274 KAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQ  331 (397)
Q Consensus       274 kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~dv~E~aL~aL~~L~~  331 (397)
                      .|++.|..+-.                ..+++.|+..|..++  ++..+..||+.+..
T Consensus       211 ~A~~aLg~~~~----------------~~av~~Li~~L~~~~--~~~~a~~ALg~ig~  250 (280)
T PRK09687        211 EAIIGLALRKD----------------KRVLSVLIKELKKGT--VGDLIIEAAGELGD  250 (280)
T ss_pred             HHHHHHHccCC----------------hhHHHHHHHHHcCCc--hHHHHHHHHHhcCC
Confidence            99999887531                357899999999876  56667766666653

>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B

Probab=98.09  E-value=8e-06  Score=59.72  Aligned_cols=55  Identities=20%  Similarity=0.405  Sum_probs=48.6

Q ss_pred             HHHHHHHHHHHHHHhcCChHHHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHH
Q 015951          183 TDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSL  238 (397)
Q Consensus       183 ~~ir~~Aa~vLg~~aqNNp~~Q~~vl~~g~lp~Ll~LL~s~~~~v~~kAl~ALS~L  238 (397)
                      +.+|..|+|+||++++..+.....+.. .++|.|+.+|.++++.||..|++||++|
T Consensus         1 p~vR~~A~~aLg~l~~~~~~~~~~~~~-~~~~~L~~~L~d~~~~VR~~A~~aLg~l   55 (55)
T PF13513_consen    1 PRVRRAAAWALGRLAEGCPELLQPYLP-ELLPALIPLLQDDDDSVRAAAAWALGNL   55 (55)
T ss_dssp             HHHHHHHHHHHHCTTTTTHHHHHHHHH-HHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred             CHHHHHHHHHHhhHhcccHHHHHHHHH-HHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence            578999999999999998877766544 5999999999998899999999999975

...

>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]

Probab=98.09  E-value=0.00031  Score=71.25  Aligned_cols=243  Identities=18%  Similarity=0.161  Sum_probs=160.6

Q ss_pred             HHHHHHHHHHhhCCCCCHHHHHHHHHHHHhccCCCCchh-HHHhc------CCHHHHHHhcCCCCHHHHHHHHHHHHHHh
Q 015951          125 AQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNAN-DLSKL------GGLSVLVGQLNHPDTDIRKISAWILGKAS  197 (397)
Q Consensus       125 ~~lmk~~i~~L~~~~~s~e~k~~AL~~L~~Lve~iDnA~-~~~~l------GGl~~Li~lL~s~~~~ir~~Aa~vLg~~a  197 (397)
                      ++..+-.+..++... .++...-+|--+.++...-..+. -|+..      --|.+.+++|...+.-+...++++|+.++
T Consensus        64 ~~~v~~fi~LlS~~~-kdd~v~yvL~li~DmLs~d~sr~~lf~~~a~~~k~~~~~~fl~ll~r~d~~iv~~~~~Ils~la  142 (442)
T KOG2759|consen   64 AQYVKTFINLLSHID-KDDTVQYVLTLIDDMLSEDRSRVDLFHDYAHKLKRTEWLSFLNLLNRQDTFIVEMSFRILSKLA  142 (442)
T ss_pred             HHHHHHHHHHhchhh-hHHHHHHHHHHHHHHHhhCchHHHHHHHHHHhhhccchHHHHHHHhcCChHHHHHHHHHHHHHH
Confidence            366666666665543 33455555555555443322222 23322      35899999999999999999999999999


Q ss_pred             cCChHHHHHHHHcC-cHHHHHHhhcC-CCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHH
Q 015951          198 QNNPLVQKQVLELG-ALSKLMKMVKS-SFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKA  275 (397)
Q Consensus       198 qNNp~~Q~~vl~~g-~lp~Ll~LL~s-~~~~v~~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klr~kA  275 (397)
                      ++-+. ...-.+.. ....|-.++++ .+.....-|+.+|..++|. ++-+..|+.++|+..|+.++.+...+..+|-..
T Consensus       143 ~~g~~-~~~~~e~~~~~~~l~~~l~~~~~~~~~~~~~rcLQ~ll~~-~eyR~~~v~adg~~~l~~~l~s~~~~~QlQYqs  220 (442)
T KOG2759|consen  143 CFGNC-KMELSELDVYKGFLKEQLQSSTNNDYIQFAARCLQTLLRV-DEYRYAFVIADGVSLLIRILASTKCGFQLQYQS  220 (442)
T ss_pred             Hhccc-cccchHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHhcC-cchhheeeecCcchhhHHHHhccCcchhHHHHH
Confidence            86442 11111111 12333344444 4456677888899999986 566899999999999999996555688899999


Q ss_pred             HHHHHHHhhchhccCCCCcchhHHhCCcHHHHHHhccCC-ChHHHHHHHHHHHHHhcCCh------HHHHHHHhcCChHH
Q 015951          276 VSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASA-DLDLQEKALAAIKNLLQLRT------TEALVLKDFCGLDT  348 (397)
Q Consensus       276 ~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~-d~dv~E~aL~aL~~L~~~~~------~~r~~~~~~~gL~~  348 (397)
                      +++++-|..      +|...+.+..-+.++.|+++++.. -..|..-++.++.|+..-++      .....+. .|++.+
T Consensus       221 ifciWlLtF------n~~~ae~~~~~~li~~L~~Ivk~~~KEKV~Rivlai~~Nll~k~~~~~~~k~~~~~mv-~~~v~k  293 (442)
T KOG2759|consen  221 IFCIWLLTF------NPHAAEKLKRFDLIQDLSDIVKESTKEKVTRIVLAIFRNLLDKGPDRETKKDIASQMV-LCKVLK  293 (442)
T ss_pred             HHHHHHhhc------CHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHH-hcCchH
Confidence            999999986      566667788889999999999875 55677777888889888763      1222333 466766


Q ss_pred             HHHHHHHHhHHhhhhhhhhhhHHhHHHHHHHHHHH
Q 015951          349 ALERLRQQLQEVMLEEDQRDYAMDVEALRREVELI  383 (397)
Q Consensus       349 ~L~~Lr~~~~~l~~~e~~~~~~~~l~~~~~e~~~~  383 (397)
                      .+..|..+   .-.|||   --+|++.++++...-
T Consensus       294 ~l~~L~~r---kysDED---L~~di~~L~e~L~~s  322 (442)
T KOG2759|consen  294 TLQSLEER---KYSDED---LVDDIEFLTEKLKNS  322 (442)
T ss_pred             HHHHHHhc---CCCcHH---HHHHHHHHHHHHHHH
Confidence            66655433   233442   233455555554443

>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A

Probab=98.02  E-value=1.8e-05  Score=62.65  Aligned_cols=87  Identities=21%  Similarity=0.287  Sum_probs=69.5

Q ss_pred             HHHHHHhc-CCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHH
Q 015951          171 LSVLVGQL-NHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMF  249 (397)
Q Consensus       171 l~~Li~lL-~s~~~~ir~~Aa~vLg~~aqNNp~~Q~~vl~~g~lp~Ll~LL~s~~~~v~~kAl~ALS~LiR~~~~~~~~f  249 (397)
                      ++.|++.| +++++.+|..|+++||.+-  .+         .++|.|+.+++++++.+|..|++||+.+-          
T Consensus         1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~--~~---------~~~~~L~~~l~d~~~~vr~~a~~aL~~i~----------   59 (88)
T PF13646_consen    1 IPALLQLLQNDPDPQVRAEAARALGELG--DP---------EAIPALIELLKDEDPMVRRAAARALGRIG----------   59 (88)
T ss_dssp             HHHHHHHHHTSSSHHHHHHHHHHHHCCT--HH---------HHHHHHHHHHTSSSHHHHHHHHHHHHCCH----------
T ss_pred             CHHHHHHHhcCCCHHHHHHHHHHHHHcC--CH---------hHHHHHHHHHcCCCHHHHHHHHHHHHHhC----------
Confidence            57899988 9999999999999999542  22         45999999999989999999999999761          


Q ss_pred             HhcCcHHHHHHhhcCCCccHHHHHHHHHHHH
Q 015951          250 YVEAGDLMLQDILGNSSFEIRLHRKAVSLVG  280 (397)
Q Consensus       250 ~~~gGi~~L~~lL~s~~~d~klr~kA~~lL~  280 (397)
                       ....++.|..++.++. +..+|..|+..|+
T Consensus        60 -~~~~~~~L~~~l~~~~-~~~vr~~a~~aL~   88 (88)
T PF13646_consen   60 -DPEAIPALIKLLQDDD-DEVVREAAAEALG   88 (88)
T ss_dssp             -HHHTHHHHHHHHTC-S-SHHHHHHHHHHHH
T ss_pred             -CHHHHHHHHHHHcCCC-cHHHHHHHHhhcC
Confidence             2348889999998763 4456777777663

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=97.97  E-value=0.00044  Score=76.51  Aligned_cols=202  Identities=17%  Similarity=0.145  Sum_probs=159.0

Q ss_pred             CCHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhccCCCCchhHHH-hcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCC
Q 015951          122 PSDAQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLS-KLGGLSVLVGQLNHPDTDIRKISAWILGKASQNN  200 (397)
Q Consensus       122 ~~d~~lmk~~i~~L~~~~~s~e~k~~AL~~L~~Lve~iDnA~~~~-~lGGl~~Li~lL~s~~~~ir~~Aa~vLg~~aqNN  200 (397)
                      .++++.+-.-+++|-+.    --|.+||.-|..+++-=--|-++. ..|-+|.++++|.++..++|-.=..+=+.+-.=.
T Consensus       468 r~PPeQLPiVLQVLLSQ----vHRlRAL~LL~RFLDlGpWAV~LaLsVGIFPYVLKLLQS~a~ELrpiLVFIWAKILAvD  543 (1387)
T KOG1517|consen  468 RTPPEQLPIVLQVLLSQ----VHRLRALVLLARFLDLGPWAVDLALSVGIFPYVLKLLQSSARELRPILVFIWAKILAVD  543 (1387)
T ss_pred             CCChHhcchHHHHHHHH----HHHHHHHHHHHHHhccchhhhhhhhccchHHHHHHHhccchHhhhhhHHHHHHHHHhcC
Confidence            45566666666666442    346778887777665433454443 3588999999999999999999999999988888


Q ss_pred             hHHHHHHHHcCcHHHHHHhhcCC-C--HHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHH
Q 015951          201 PLVQKQVLELGALSKLMKMVKSS-F--VEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVS  277 (397)
Q Consensus       201 p~~Q~~vl~~g~lp~Ll~LL~s~-~--~~v~~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klr~kA~~  277 (397)
                      |.||...++.++-...++.|..+ .  ++-|.-|.+-|+.++++|+.+|....+.+-+.+....|.++. ..-+|.=.+-
T Consensus       544 ~SCQ~dLvKe~g~~YF~~vL~~~~~~~~EqrtmaAFVLAviv~nf~lGQ~acl~~~li~iCle~lnd~~-~pLLrQW~~i  622 (1387)
T KOG1517|consen  544 PSCQADLVKENGYKYFLQVLDPSQAIPPEQRTMAAFVLAVIVRNFKLGQKACLNGNLIGICLEHLNDDP-EPLLRQWLCI  622 (1387)
T ss_pred             chhHHHHHhccCceeEEEEecCcCCCCHHHHHHHHHHHHHHHcccchhHHHhccccHHHHHHHHhcCCc-cHHHHHHHHH
Confidence            99999999999999999999873 2  477889999999999999999999999999998889898753 4568888888


Q ss_pred             HHHHHhhchhccCCCCcchhHHhCCcHHHHHHhccCCChHHHHHHHHHHHHHhcCC
Q 015951          278 LVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLR  333 (397)
Q Consensus       278 lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~dv~E~aL~aL~~L~~~~  333 (397)
                      +|.-|-..     .+..+=.=.+.+..+.|..+|+.+-++||..|+.||+++....
T Consensus       623 cLG~LW~d-----~~~Arw~G~r~~AhekL~~~LsD~vpEVRaAAVFALgtfl~~~  673 (1387)
T KOG1517|consen  623 CLGRLWED-----YDEARWSGRRDNAHEKLILLLSDPVPEVRAAAVFALGTFLSNG  673 (1387)
T ss_pred             HHHHHhhh-----cchhhhccccccHHHHHHHHhcCccHHHHHHHHHHHHHHhccc
Confidence            88887642     1222111235677888999999999999999999999999864

>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]

Probab=97.92  E-value=8.5e-05  Score=75.48  Aligned_cols=183  Identities=15%  Similarity=0.113  Sum_probs=131.8

Q ss_pred             hcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCcHHHHHHhhcCC----C---HHHHHHHHHHHHHHh
Q 015951          167 KLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSS----F---VEEAVKALYTVSSLI  239 (397)
Q Consensus       167 ~lGGl~~Li~lL~s~~~~ir~~Aa~vLg~~aqNNp~~Q~~vl~~g~lp~Ll~LL~s~----~---~~v~~kAl~ALS~Li  239 (397)
                      ..|.+++|.+..+|++.++-.+.++++|++|..|.+.+..|.+.||-..++..|+..    +   .+...-+..-|+|.+
T Consensus        85 ~a~~le~Lrq~psS~d~ev~~Q~~RaLgNiCydn~E~R~a~~~lgGaqivid~L~~~cs~d~~ane~~~~v~~g~l~Ny~  164 (604)
T KOG4500|consen   85 DAEALELLRQTPSSPDTEVHEQCFRALGNICYDNNENRAAFFNLGGAQIVIDVLKPYCSKDNPANEEYSAVAFGVLHNYI  164 (604)
T ss_pred             HHHHHHHHHhCCCCCcccHHHHHHHHHhhhhccCchhHHHHHhcCCceehHhhhccccccCCccHHHHHHHHHHHHHHhh
Confidence            357788999999999999999999999999999999999999999977777777643    2   234566778889999


Q ss_pred             cCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHHhCCcHHHHHHhccCC-ChHH
Q 015951          240 RNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASA-DLDL  318 (397)
Q Consensus       240 R~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klr~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~-d~dv  318 (397)
                      -++..-+.+..++|.++.|..++.-+-.+..+-.+......+|++-    ..+-..+...+..+...++.++.+. ++|+
T Consensus       165 l~~~~l~aq~~~~gVl~tL~~~~~I~~qNaa~~e~ll~~f~nlls~----~~e~~~~~~~d~sl~~~l~~ll~~~v~~d~  240 (604)
T KOG4500|consen  165 LDSRELRAQVADAGVLNTLAITYWIDWQNAALTEKLLAPFFNLLSF----VCEMLYPFCKDCSLVFMLLQLLPSMVREDI  240 (604)
T ss_pred             CCcHHHHHHHHhcccHHHHHHHhhcccccHHHHHHHHhccccHHHH----HHHhhhhhhccchHHHHHHHHHHHhhccch
Confidence            8999999999999999999988764322333333333333333321    0122345566778888888888764 7889


Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHHH
Q 015951          319 QEKALAAIKNLLQLRTTEALVLKDFCGLDTALERLR  354 (397)
Q Consensus       319 ~E~aL~aL~~L~~~~~~~r~~~~~~~gL~~~L~~Lr  354 (397)
                      .|.....+.-.+.... -.-.+.+.|-++..++.+|
T Consensus       241 ~eM~feila~~aend~-Vkl~la~~gl~e~~~~lv~  275 (604)
T KOG4500|consen  241 DEMIFEILAKAAENDL-VKLSLAQNGLLEDSIDLVR  275 (604)
T ss_pred             hhHHHHHHHHHhcCcc-eeeehhhcchHHHHHHHHH
Confidence            9999988888887654 3334554554466666443

>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional

Probab=97.91  E-value=0.00064  Score=76.68  Aligned_cols=27  Identities=11%  Similarity=0.273  Sum_probs=16.9

Q ss_pred             HHHHHHhhcCCCccHHHHHHHHHHHHHHh
Q 015951          255 DLMLQDILGNSSFEIRLHRKAVSLVGDLA  283 (397)
Q Consensus       255 i~~L~~lL~s~~~d~klr~kA~~lL~~L~  283 (397)
                      ++.|..+++++  +..+|..|+..|..+-
T Consensus       777 ~~~L~~ll~D~--d~~VR~aA~~aLg~~g  803 (897)
T PRK13800        777 GDAVRALTGDP--DPLVRAAALAALAELG  803 (897)
T ss_pred             HHHHHHHhcCC--CHHHHHHHHHHHHhcC
Confidence            46666666665  4456767766666553

>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional

Probab=97.88  E-value=0.0006  Score=76.88  Aligned_cols=131  Identities=16%  Similarity=0.129  Sum_probs=94.5

Q ss_pred             HHHHHHhcCCCCHHHHHHHHHHHHHHh----------cCChHHHHHHHHc---------CcHHHHHHhhcCCCHHHHHHH
Q 015951          171 LSVLVGQLNHPDTDIRKISAWILGKAS----------QNNPLVQKQVLEL---------GALSKLMKMVKSSFVEEAVKA  231 (397)
Q Consensus       171 l~~Li~lL~s~~~~ir~~Aa~vLg~~a----------qNNp~~Q~~vl~~---------g~lp~Ll~LL~s~~~~v~~kA  231 (397)
                      ...++..|.++++.+|..|+..|+.+-          ..++.+|..+.+.         ..++.|+.+++++++.+|..|
T Consensus       716 ~~~l~~~L~D~d~~VR~~Av~aL~~~~~~~~l~~~l~D~~~~VR~~aa~aL~~~~~~~~~~~~~L~~ll~D~d~~VR~aA  795 (897)
T PRK13800        716 AALFAAALGDPDHRVRIEAVRALVSVDDVESVAGAATDENREVRIAVAKGLATLGAGGAPAGDAVRALTGDPDPLVRAAA  795 (897)
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHhcccCcHHHHHHhcCCCHHHHHHHHHHHHHhccccchhHHHHHHHhcCCCHHHHHHH
Confidence            455666777777777777777776531          2345555544432         237889999998888999999


Q ss_pred             HHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHHhCCcHHHHHHhc
Q 015951          232 LYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLT  311 (397)
Q Consensus       232 l~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klr~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL  311 (397)
                      +.+|+.+-  .+.        ..+..|...|.++  +..+|..|+.+|..+-.                ...++.|+.+|
T Consensus       796 ~~aLg~~g--~~~--------~~~~~l~~aL~d~--d~~VR~~Aa~aL~~l~~----------------~~a~~~L~~~L  847 (897)
T PRK13800        796 LAALAELG--CPP--------DDVAAATAALRAS--AWQVRQGAARALAGAAA----------------DVAVPALVEAL  847 (897)
T ss_pred             HHHHHhcC--Ccc--------hhHHHHHHHhcCC--ChHHHHHHHHHHHhccc----------------cchHHHHHHHh
Confidence            99999872  221        1224578888876  56789999999987642                23458899999


Q ss_pred             cCCChHHHHHHHHHHHHH
Q 015951          312 ASADLDLQEKALAAIKNL  329 (397)
Q Consensus       312 ~~~d~dv~E~aL~aL~~L  329 (397)
                      +.++..||..|+.+|..+
T Consensus       848 ~D~~~~VR~~A~~aL~~~  865 (897)
T PRK13800        848 TDPHLDVRKAAVLALTRW  865 (897)
T ss_pred             cCCCHHHHHHHHHHHhcc
Confidence            999999999999999886

>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10

Probab=97.88  E-value=6.7e-05  Score=62.51  Aligned_cols=67  Identities=18%  Similarity=0.194  Sum_probs=59.3

Q ss_pred             HHHHHHHHHHHHhcCChHHHHHHHHcCcHHHHHHhhcCC--CHHHHHHHHHHHHHHhcCChhcHHHHHh
Q 015951          185 IRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSS--FVEEAVKALYTVSSLIRNNLAGQEMFYV  251 (397)
Q Consensus       185 ir~~Aa~vLg~~aqNNp~~Q~~vl~~g~lp~Ll~LL~s~--~~~v~~kAl~ALS~LiR~~~~~~~~f~~  251 (397)
                      +|..-..+||+++.+|+.+|+.+.+.|+||.+++.-.-+  ++-++.-|++||-+++.+|+.+|..+.+
T Consensus         2 ~K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~eNQ~~I~~   70 (102)
T PF09759_consen    2 FKRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPENQEFIAQ   70 (102)
T ss_pred             cHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHHHHHHHHh
Confidence            467778999999999999999999999999999876543  4678999999999999999999887654

Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].

>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless

Probab=97.86  E-value=1.4e-05  Score=55.04  Aligned_cols=38  Identities=32%  Similarity=0.691  Sum_probs=35.8

Q ss_pred             CchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHh
Q 015951          160 DNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKAS  197 (397)
Q Consensus       160 DnA~~~~~lGGl~~Li~lL~s~~~~ir~~Aa~vLg~~a  197 (397)
                      +|...+++.||+|+|+++|+++++++|..|+|+|++++
T Consensus         3 ~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~   40 (41)
T PF00514_consen    3 ENKQAIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNLA   40 (41)
T ss_dssp             HHHHHHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence            56778999999999999999999999999999999987

Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....

>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]

Probab=97.84  E-value=0.00018  Score=73.22  Aligned_cols=148  Identities=16%  Similarity=0.125  Sum_probs=117.8

Q ss_pred             CCCCHHHHHHHHHHHHHHhcCChHHHHHHHHc----CcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCc
Q 015951          179 NHPDTDIRKISAWILGKASQNNPLVQKQVLEL----GALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAG  254 (397)
Q Consensus       179 ~s~~~~ir~~Aa~vLg~~aqNNp~~Q~~vl~~----g~lp~Ll~LL~s~~~~v~~kAl~ALS~LiR~~~~~~~~f~~~gG  254 (397)
                      ...+..++..+..|++..+. ||..+..|.++    +++..|.+..+|++.++......||+|++..|.+++.+|.+.||
T Consensus        52 ~~~~~tv~~~qssC~A~~sk-~ev~r~~F~~~~I~a~~le~Lrq~psS~d~ev~~Q~~RaLgNiCydn~E~R~a~~~lgG  130 (604)
T KOG4500|consen   52 MTASDTVYLFQSSCLADRSK-NEVERSLFRNYCIDAEALELLRQTPSSPDTEVHEQCFRALGNICYDNNENRAAFFNLGG  130 (604)
T ss_pred             eeccchhhhhhHHHHHHHhh-hHHHHHHHHHHhhHHHHHHHHHhCCCCCcccHHHHHHHHHhhhhccCchhHHHHHhcCC
Confidence            34567889999999999995 57677777665    66888888888888899999999999999999999999999999


Q ss_pred             HHHHHHhhcCC-----CccHHHHHHHHHHHHHHhhchhccCCCCcchhHHhCCcHHHHHHhccC--CChHHHHHHHHHHH
Q 015951          255 DLMLQDILGNS-----SFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTAS--ADLDLQEKALAAIK  327 (397)
Q Consensus       255 i~~L~~lL~s~-----~~d~klr~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~--~d~dv~E~aL~aL~  327 (397)
                      -+++++.|+.-     ....++-.-+..++.|-.-     .+.+.+..+.+.|+++.|+..+--  .+....|+.+....
T Consensus       131 aqivid~L~~~cs~d~~ane~~~~v~~g~l~Ny~l-----~~~~l~aq~~~~gVl~tL~~~~~I~~qNaa~~e~ll~~f~  205 (604)
T KOG4500|consen  131 AQIVIDVLKPYCSKDNPANEEYSAVAFGVLHNYIL-----DSRELRAQVADAGVLNTLAITYWIDWQNAALTEKLLAPFF  205 (604)
T ss_pred             ceehHhhhccccccCCccHHHHHHHHHHHHHHhhC-----CcHHHHHHHHhcccHHHHHHHhhcccccHHHHHHHHhccc
Confidence            88888887631     1233555666777777663     466788889999999999887643  46777788888888


Q ss_pred             HHhcC
Q 015951          328 NLLQL  332 (397)
Q Consensus       328 ~L~~~  332 (397)
                      +|++.
T Consensus       206 nlls~  210 (604)
T KOG4500|consen  206 NLLSF  210 (604)
T ss_pred             cHHHH
Confidence            88765

>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=97.83  E-value=0.00079  Score=75.24  Aligned_cols=174  Identities=16%  Similarity=0.120  Sum_probs=128.2

Q ss_pred             HHHHH----HhcCCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcH
Q 015951          171 LSVLV----GQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQ  246 (397)
Q Consensus       171 l~~Li----~lL~s~~~~ir~~Aa~vLg~~aqNNp~~Q~~vl~~g~lp~Ll~LL~s~~~~v~~kAl~ALS~LiR~~~~~~  246 (397)
                      +|++.    .+|.|++..-|..|..+|+.++...++.-...+. ..++..+..|++..+-||-.|+.||+.+..++.+-.
T Consensus       346 ~p~~~~~l~~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~~l~-~Il~~Vl~~l~DphprVr~AA~naigQ~stdl~p~i  424 (1075)
T KOG2171|consen  346 LPPLFEALEAMLQSTEWKERHAALLALSVIAEGCSDVMIGNLP-KILPIVLNGLNDPHPRVRYAALNAIGQMSTDLQPEI  424 (1075)
T ss_pred             hHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcccHHHHHHHHH-HHHHHHHhhcCCCCHHHHHHHHHHHHhhhhhhcHHH
Confidence            55555    4678999999999999999999887665555443 477888888999889999999999999999998888


Q ss_pred             HHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCC-cchhHHhCCcHH-HHHHhccCCChHHHHHHHH
Q 015951          247 EMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKV-EPPLFRDRFFLK-SVVDLTASADLDLQEKALA  324 (397)
Q Consensus       247 ~~f~~~gGi~~L~~lL~s~~~d~klr~kA~~lL~~L~~~~l~~~~~~-~~~~l~~~g~v~-~Lv~lL~~~d~dv~E~aL~  324 (397)
                      +.....--++.|+..+.+. .++|++..|+.++-++..+    ...+ +.+.+  .+++. .+.-++.++.+.++|.++.
T Consensus       425 qk~~~e~l~~aL~~~ld~~-~~~rV~ahAa~al~nf~E~----~~~~~l~pYL--d~lm~~~l~~L~~~~~~~v~e~vvt  497 (1075)
T KOG2171|consen  425 QKKHHERLPPALIALLDST-QNVRVQAHAAAALVNFSEE----CDKSILEPYL--DGLMEKKLLLLLQSSKPYVQEQAVT  497 (1075)
T ss_pred             HHHHHHhccHHHHHHhccc-CchHHHHHHHHHHHHHHHh----CcHHHHHHHH--HHHHHHHHHHHhcCCchhHHHHHHH
Confidence            8887777888999999887 3678999999999998753    1222 22221  23444 3344567788999999999


Q ss_pred             HHHHHhcCChHHHHHHHhcCChHHHHHHHHHHh
Q 015951          325 AIKNLLQLRTTEALVLKDFCGLDTALERLRQQL  357 (397)
Q Consensus       325 aL~~L~~~~~~~r~~~~~~~gL~~~L~~Lr~~~  357 (397)
                      ||.+.+...   ...|.  .-.+.++..|+.-+
T Consensus       498 aIasvA~AA---~~~F~--pY~d~~Mp~L~~~L  525 (1075)
T KOG2171|consen  498 AIASVADAA---QEKFI--PYFDRLMPLLKNFL  525 (1075)
T ss_pred             HHHHHHHHH---hhhhH--hHHHHHHHHHHHHH
Confidence            999999653   34443  22344445454443

>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=97.82  E-value=2.3e-05  Score=66.92  Aligned_cols=101  Identities=23%  Similarity=0.303  Sum_probs=72.3

Q ss_pred             HHHHHHHHhccccccccCCCCHHHHHHhHHHHHHHHHhcCCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhccCCCC
Q 015951           81 GMLQWAIAKLKETAQDVQRLSPSELKKRQMEIKELMEKLKTPSDAQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPID  160 (397)
Q Consensus        81 glLkwsi~~~~~~~~~~~~~s~e~l~~r~~~L~ea~~~~~~~~d~~lmk~~i~~L~~~~~s~e~k~~AL~~L~~Lve~iD  160 (397)
                      |.|.||--|.++                 +|=+|-...| ..++.+++|.++++|..+. ++.....|+.+|.++|....
T Consensus        16 g~L~WSP~H~se-----------------~FW~ENa~kf-~~~~~~llk~L~~lL~~s~-d~~~laVac~Dig~~vr~~p   76 (119)
T PF11698_consen   16 GHLEWSPVHKSE-----------------KFWRENADKF-EENNFELLKKLIKLLDKSD-DPTTLAVACHDIGEFVRHYP   76 (119)
T ss_dssp             T-----GGGG-H-----------------HHHHHHSGGG-SSGGGHHHHHHHHHH-SHH-HHHHHHHHHHHHHHHHHH-G
T ss_pred             CCccccCCCCCc-----------------cHHHHHHHHH-HHcccHHHHHHHHHHccCC-CcceeehhhcchHHHHHHCh
Confidence            778888666432                 2344444444 4578999999999996544 55667789999999999988


Q ss_pred             chhHHH-hcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCC
Q 015951          161 NANDLS-KLGGLSVLVGQLNHPDTDIRKISAWILGKASQNN  200 (397)
Q Consensus       161 nA~~~~-~lGGl~~Li~lL~s~~~~ir~~Aa~vLg~~aqNN  200 (397)
                      +.+.++ ++|+=..+++++++++++||..|..++..+..+|
T Consensus        77 ~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~~~  117 (119)
T PF11698_consen   77 NGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLMVNN  117 (119)
T ss_dssp             GGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHHHHS
T ss_pred             hHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHHHhc
Confidence            888777 5677778889999999999999999999887654

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.

>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=97.81  E-value=0.00027  Score=70.01  Aligned_cols=187  Identities=18%  Similarity=0.118  Sum_probs=127.8

Q ss_pred             HHHHHHHHhhCCCCCHHHHHHHHHHHHhccCCCCchhHHHhcCCHHHHHHhcCC----CCHHHHHHHHHHHHHHhcCChH
Q 015951          127 LIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNH----PDTDIRKISAWILGKASQNNPL  202 (397)
Q Consensus       127 lmk~~i~~L~~~~~s~e~k~~AL~~L~~Lve~iDnA~~~~~lGGl~~Li~lL~s----~~~~ir~~Aa~vLg~~aqNNp~  202 (397)
                      .....+..+.++  +.--...|+..|..++..-+....-...+.++.++++|.+    ++.+++..|+.+++.+.. ++.
T Consensus       106 ~~~~fl~ll~~~--D~~i~~~a~~iLt~Ll~~~~~~~~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~-~~~  182 (312)
T PF03224_consen  106 PYSPFLKLLDRN--DSFIQLKAAFILTSLLSQGPKRSEKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLR-SKE  182 (312)
T ss_dssp             -HHHHHHH-S-S--SHHHHHHHHHHHHHHHTSTTT--HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHT-SHH
T ss_pred             hHHHHHHHhcCC--CHHHHHHHHHHHHHHHHcCCccccchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhC-cch
Confidence            444555655544  4445666788888777654433333224456777776643    567788999999999995 688


Q ss_pred             HHHHHHHcCcHHHHHHhh-----cCCC--HHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHH
Q 015951          203 VQKQVLELGALSKLMKMV-----KSSF--VEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKA  275 (397)
Q Consensus       203 ~Q~~vl~~g~lp~Ll~LL-----~s~~--~~v~~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klr~kA  275 (397)
                      .+..|.+.|+++.|..++     .+.+  ..++-.+++++-.+.. ++.....+.+.+-++.|..+++... ..|+-|-+
T Consensus       183 ~R~~f~~~~~v~~l~~iL~~~~~~~~~~~~Ql~Y~~ll~lWlLSF-~~~~~~~~~~~~~i~~L~~i~~~~~-KEKvvRv~  260 (312)
T PF03224_consen  183 YRQVFWKSNGVSPLFDILRKQATNSNSSGIQLQYQALLCLWLLSF-EPEIAEELNKKYLIPLLADILKDSI-KEKVVRVS  260 (312)
T ss_dssp             HHHHHHTHHHHHHHHHHHH---------HHHHHHHHHHHHHHHTT-SHHHHHHHHTTSHHHHHHHHHHH---SHHHHHHH
T ss_pred             hHHHHHhcCcHHHHHHHHHhhcccCCCCchhHHHHHHHHHHHHhc-CHHHHHHHhccchHHHHHHHHHhcc-cchHHHHH
Confidence            999999999999999999     2222  3567789999987765 5677788888899999999999653 56899999


Q ss_pred             HHHHHHHhhchhccCCCCcchhHHhCCcHHHHHHhccC--CChHHHHHH
Q 015951          276 VSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTAS--ADLDLQEKA  322 (397)
Q Consensus       276 ~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~--~d~dv~E~a  322 (397)
                      +..+.||+..    ......+.++..|+++.+-.+...  .|+|+.+-.
T Consensus       261 la~l~Nl~~~----~~~~~~~~mv~~~~l~~l~~L~~rk~~Dedl~edl  305 (312)
T PF03224_consen  261 LAILRNLLSK----APKSNIELMVLCGLLKTLQNLSERKWSDEDLTEDL  305 (312)
T ss_dssp             HHHHHHTTSS----SSTTHHHHHHHH-HHHHHHHHHSS--SSHHHHHHH
T ss_pred             HHHHHHHHhc----cHHHHHHHHHHccHHHHHHHHhcCCCCCHHHHHHH
Confidence            9999999862    233367777888877777666554  377776643

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.

>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=97.72  E-value=0.002  Score=67.40  Aligned_cols=203  Identities=17%  Similarity=0.169  Sum_probs=135.9

Q ss_pred             HhHHHHHHHHHhc-CCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhccCCCCchhHHHhcCCHHHHHHhcCCCCHHH
Q 015951          107 KRQMEIKELMEKL-KTPSDAQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDI  185 (397)
Q Consensus       107 ~r~~~L~ea~~~~-~~~~d~~lmk~~i~~L~~~~~s~e~k~~AL~~L~~Lve~iDnA~~~~~lGGl~~Li~lL~s~~~~i  185 (397)
                      +|++-+++.+... .|.+-.......+..+.  +.+.+.|.-+.-.+..+.+.-..   +..+ .+..+.+-|+++++.+
T Consensus        22 ~~~~~l~kli~~~~~G~~~~~~~~~vi~l~~--s~~~~~Krl~yl~l~~~~~~~~~---~~~l-~~n~l~kdl~~~n~~~   95 (526)
T PF01602_consen   22 KKKEALKKLIYLMMLGYDISFLFMEVIKLIS--SKDLELKRLGYLYLSLYLHEDPE---LLIL-IINSLQKDLNSPNPYI   95 (526)
T ss_dssp             HHHHHHHHHHHHHHTT---GSTHHHHHCTCS--SSSHHHHHHHHHHHHHHTTTSHH---HHHH-HHHHHHHHHCSSSHHH
T ss_pred             HHHHHHHHHHHHHHcCCCCchHHHHHHHHhC--CCCHHHHHHHHHHHHHHhhcchh---HHHH-HHHHHHHhhcCCCHHH
Confidence            3555566654433 23333344455555555  33566776665555555443222   2222 4566667789999999


Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCC
Q 015951          186 RKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNS  265 (397)
Q Consensus       186 r~~Aa~vLg~~aqNNp~~Q~~vl~~g~lp~Ll~LL~s~~~~v~~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~  265 (397)
                      |..|.++|++++  +|+.-+.     .+|.+.+++.++++-||++|+.|+..+.+.+|.....   . -++.|..+|.++
T Consensus        96 ~~lAL~~l~~i~--~~~~~~~-----l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~~~~~---~-~~~~l~~lL~d~  164 (526)
T PF01602_consen   96 RGLALRTLSNIR--TPEMAEP-----LIPDVIKLLSDPSPYVRKKAALALLKIYRKDPDLVED---E-LIPKLKQLLSDK  164 (526)
T ss_dssp             HHHHHHHHHHH---SHHHHHH-----HHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHCCHHG---G-HHHHHHHHTTHS
T ss_pred             HHHHHhhhhhhc--ccchhhH-----HHHHHHHHhcCCchHHHHHHHHHHHHHhccCHHHHHH---H-HHHHHhhhccCC
Confidence            999999999997  5655443     4788999999999999999999999999988775443   1 378899999766


Q ss_pred             CccHHHHHHHHHHHHHH-hhchhccCCCCcchhHHhCCcHHHHHHhccCCChHHHHHHHHHHHHHhcCChHH
Q 015951          266 SFEIRLHRKAVSLVGDL-AKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLRTTE  336 (397)
Q Consensus       266 ~~d~klr~kA~~lL~~L-~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~dv~E~aL~aL~~L~~~~~~~  336 (397)
                        ++.++..|+.++..+ ...      +....  .-+.+++.+..++..+++-.+.+++..+..+....+..
T Consensus       165 --~~~V~~~a~~~l~~i~~~~------~~~~~--~~~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~~~~~~  226 (526)
T PF01602_consen  165 --DPSVVSAALSLLSEIKCND------DSYKS--LIPKLIRILCQLLSDPDPWLQIKILRLLRRYAPMEPED  226 (526)
T ss_dssp             --SHHHHHHHHHHHHHHHCTH------HHHTT--HHHHHHHHHHHHHTCCSHHHHHHHHHHHTTSTSSSHHH
T ss_pred             --cchhHHHHHHHHHHHccCc------chhhh--hHHHHHHHhhhcccccchHHHHHHHHHHHhcccCChhh
Confidence              567899999999998 211      11011  11344566666667888899999998888888765543

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.

>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=97.71  E-value=0.0022  Score=67.12  Aligned_cols=161  Identities=16%  Similarity=0.160  Sum_probs=124.2

Q ss_pred             CCHHHHHHHHHHHHhcc-CCCCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCcHHHHHH
Q 015951          140 LSLEDSQRALQELLILV-EPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMK  218 (397)
Q Consensus       140 ~s~e~k~~AL~~L~~Lv-e~iDnA~~~~~lGGl~~Li~lL~s~~~~ir~~Aa~vLg~~aqNNp~~Q~~vl~~g~lp~Ll~  218 (397)
                      .+.++|..++..+-++. ...|..      -|++.++.++.+++..+|..+--.+......+|+.  .++   ++..+.+
T Consensus        18 ~~~~~~~~~l~kli~~~~~G~~~~------~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~~~~--~~l---~~n~l~k   86 (526)
T PF01602_consen   18 IDISKKKEALKKLIYLMMLGYDIS------FLFMEVIKLISSKDLELKRLGYLYLSLYLHEDPEL--LIL---IINSLQK   86 (526)
T ss_dssp             THHHHHHHHHHHHHHHHHTT---G------STHHHHHCTCSSSSHHHHHHHHHHHHHHTTTSHHH--HHH---HHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHcCCCCc------hHHHHHHHHhCCCCHHHHHHHHHHHHHHhhcchhH--HHH---HHHHHHH
Confidence            34567777777776643 223222      69999999999999999999999999999999872  222   5677778


Q ss_pred             hhcCCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhH
Q 015951          219 MVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLF  298 (397)
Q Consensus       219 LL~s~~~~v~~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klr~kA~~lL~~L~~~~l~~~~~~~~~~l  298 (397)
                      =+.++++.++.-|+.+||++.  .+.....     -++.+..++.++  ++.+|++|+.++..+...     .|+.   +
T Consensus        87 dl~~~n~~~~~lAL~~l~~i~--~~~~~~~-----l~~~v~~ll~~~--~~~VRk~A~~~l~~i~~~-----~p~~---~  149 (526)
T PF01602_consen   87 DLNSPNPYIRGLALRTLSNIR--TPEMAEP-----LIPDVIKLLSDP--SPYVRKKAALALLKIYRK-----DPDL---V  149 (526)
T ss_dssp             HHCSSSHHHHHHHHHHHHHH---SHHHHHH-----HHHHHHHHHHSS--SHHHHHHHHHHHHHHHHH-----CHCC---H
T ss_pred             hhcCCCHHHHHHHHhhhhhhc--ccchhhH-----HHHHHHHHhcCC--chHHHHHHHHHHHHHhcc-----CHHH---H
Confidence            888989999999999999985  3443333     467788888887  557999999999999862     3332   3


Q ss_pred             HhCCcHHHHHHhccCCChHHHHHHHHHHHHH
Q 015951          299 RDRFFLKSVVDLTASADLDLQEKALAAIKNL  329 (397)
Q Consensus       299 ~~~g~v~~Lv~lL~~~d~dv~E~aL~aL~~L  329 (397)
                      ... +++.+..+|...|+.++..|+.++..+
T Consensus       150 ~~~-~~~~l~~lL~d~~~~V~~~a~~~l~~i  179 (526)
T PF01602_consen  150 EDE-LIPKLKQLLSDKDPSVVSAALSLLSEI  179 (526)
T ss_dssp             HGG-HHHHHHHHTTHSSHHHHHHHHHHHHHH
T ss_pred             HHH-HHHHHhhhccCCcchhHHHHHHHHHHH
Confidence            333 799999999999999999999999999

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.

>PF05536 Neurochondrin: Neurochondrin

Probab=97.70  E-value=0.003  Score=67.50  Aligned_cols=152  Identities=16%  Similarity=0.190  Sum_probs=122.7

Q ss_pred             HHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhccCCCCc-hh---HHHhcCCHHHHHHhcCC-------CCHHHHHHHHHH
Q 015951          124 DAQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDN-AN---DLSKLGGLSVLVGQLNH-------PDTDIRKISAWI  192 (397)
Q Consensus       124 d~~lmk~~i~~L~~~~~s~e~k~~AL~~L~~Lve~iDn-A~---~~~~lGGl~~Li~lL~s-------~~~~ir~~Aa~v  192 (397)
                      ..+.+++++..|+...  .++|..+|--+-.++.+-|. +.   .+.+.=|++-+-++|++       +....+..|..+
T Consensus         3 ~~~~l~~c~~lL~~~~--D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~Lavsv   80 (543)
T PF05536_consen    3 QSASLEKCLSLLKSAD--DTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSV   80 (543)
T ss_pred             chHHHHHHHHHhccCC--cHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHH
Confidence            4567899999998876  57899999999999987663 21   24455567777789977       457899999999


Q ss_pred             HHHHhcCChHHH--HHHHHcCcHHHHHHhhcCCCH-HHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccH
Q 015951          193 LGKASQNNPLVQ--KQVLELGALSKLMKMVKSSFV-EEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEI  269 (397)
Q Consensus       193 Lg~~aqNNp~~Q--~~vl~~g~lp~Ll~LL~s~~~-~v~~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~  269 (397)
                      |++.|. .|...  ..++  +-||.|+.++.+.+. ++...++..|.+++ .+|.+++.|++.|+++.|.+++.+.   .
T Consensus        81 L~~f~~-~~~~a~~~~~~--~~IP~Lle~l~~~s~~~~v~dalqcL~~Ia-s~~~G~~aLl~~g~v~~L~ei~~~~---~  153 (543)
T PF05536_consen   81 LAAFCR-DPELASSPQMV--SRIPLLLEILSSSSDLETVDDALQCLLAIA-SSPEGAKALLESGAVPALCEIIPNQ---S  153 (543)
T ss_pred             HHHHcC-ChhhhcCHHHH--HHHHHHHHHHHcCCchhHHHHHHHHHHHHH-cCcHhHHHHHhcCCHHHHHHHHHhC---c
Confidence            999998 56554  3343  469999999988777 88889999999998 7899999999999999999999874   2


Q ss_pred             HHHHHHHHHHHHHhh
Q 015951          270 RLHRKAVSLVGDLAK  284 (397)
Q Consensus       270 klr~kA~~lL~~L~~  284 (397)
                      .....|..++.+++.
T Consensus       154 ~~~E~Al~lL~~Lls  168 (543)
T PF05536_consen  154 FQMEIALNLLLNLLS  168 (543)
T ss_pred             chHHHHHHHHHHHHH
Confidence            467889999999886

>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]

Probab=97.69  E-value=0.0015  Score=71.08  Aligned_cols=220  Identities=14%  Similarity=0.094  Sum_probs=165.7

Q ss_pred             HHHHhhCCCCCHHHHHHHHHHHHhccCCCC-chhHHHhcCCHHHHHH-hcCCCCHHHHHHHHHHHHHHhcCChHHHHHHH
Q 015951          131 AIDDLNNSTLSLEDSQRALQELLILVEPID-NANDLSKLGGLSVLVG-QLNHPDTDIRKISAWILGKASQNNPLVQKQVL  208 (397)
Q Consensus       131 ~i~~L~~~~~s~e~k~~AL~~L~~Lve~iD-nA~~~~~lGGl~~Li~-lL~s~~~~ir~~Aa~vLg~~aqNNp~~Q~~vl  208 (397)
                      ++..|+ .+...|-...|...|.++++-.- ..-..+..+.+|.|+. ++.=..-++-+++..+|-.+.+.+|   .+++
T Consensus       216 Lv~LL~-~E~n~DIMl~AcRaltyl~evlP~S~a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H~---~AiL  291 (1051)
T KOG0168|consen  216 LVALLS-HEHNFDIMLLACRALTYLCEVLPRSSAIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRHP---KAIL  291 (1051)
T ss_pred             HHHHHh-ccccHHHHHHHHHHHHHHHhhccchhheeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhcc---HHHH
Confidence            444443 44467888889999999998653 4445667799999995 7778899999999999999999887   5689


Q ss_pred             HcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhc
Q 015951          209 ELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLE  288 (397)
Q Consensus       209 ~~g~lp~Ll~LL~s~~~~v~~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klr~kA~~lL~~L~~~~l~  288 (397)
                      +.|+|...+..|+--+..++++|+...+|++..-++-.-.|+ ...++.|..+|+..  |.+....++-++..++...  
T Consensus       292 ~AG~l~a~LsylDFFSi~aQR~AlaiaaN~Cksi~sd~f~~v-~ealPlL~~lLs~~--D~k~ies~~ic~~ri~d~f--  366 (1051)
T KOG0168|consen  292 QAGALSAVLSYLDFFSIHAQRVALAIAANCCKSIRSDEFHFV-MEALPLLTPLLSYQ--DKKPIESVCICLTRIADGF--  366 (1051)
T ss_pred             hcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchHH-HHHHHHHHHHHhhc--cchhHHHHHHHHHHHHHhc--
Confidence            999999999999877788999999999999987544222232 57899999999975  5577888888888888642  


Q ss_pred             cCCCCcchhHHhCCcHHHHHHhccCC----ChHHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHHHHHhHHh
Q 015951          289 NMHKVEPPLFRDRFFLKSVVDLTASA----DLDLQEKALAAIKNLLQLRTTEALVLKDFCGLDTALERLRQQLQEV  360 (397)
Q Consensus       289 ~~~~~~~~~l~~~g~v~~Lv~lL~~~----d~dv~E~aL~aL~~L~~~~~~~r~~~~~~~gL~~~L~~Lr~~~~~l  360 (397)
                      ...++..+.+..+|++....+||.-.    ...+.--..+.|..+++..+..+..+- .-++-..|.++-++|..-
T Consensus       367 ~h~~~kLdql~s~dLi~~~~qLlsvt~t~Ls~~~~~~vIrmls~msS~~pl~~~tl~-k~~I~~~L~~il~g~s~s  441 (1051)
T KOG0168|consen  367 QHGPDKLDQLCSHDLITNIQQLLSVTPTILSNGTYTGVIRMLSLMSSGSPLLFRTLL-KLDIADTLKRILQGYSKS  441 (1051)
T ss_pred             ccChHHHHHHhchhHHHHHHHHHhcCcccccccchhHHHHHHHHHccCChHHHHHHH-HhhHHHHHHHHHhccCcC
Confidence            23567788899999999999998764    334555566667777776554333332 466767777777776553

>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]

Probab=97.61  E-value=0.00094  Score=68.67  Aligned_cols=176  Identities=18%  Similarity=0.150  Sum_probs=133.1

Q ss_pred             hcCCHHHHHHhcCCCCH--HHHHHHHHHHHHHhcCChHHHHHHHHcCcHHHHHHhhcC-CCHHHHHHHHHHHHHHhcCCh
Q 015951          167 KLGGLSVLVGQLNHPDT--DIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKS-SFVEEAVKALYTVSSLIRNNL  243 (397)
Q Consensus       167 ~lGGl~~Li~lL~s~~~--~ir~~Aa~vLg~~aqNNp~~Q~~vl~~g~lp~Ll~LL~s-~~~~v~~kAl~ALS~LiR~~~  243 (397)
                      .-||+..|+.++.+++.  .+|..|+.+|-.+..  .+.++.+...| +..++.+.+. ++.+.+...+.-|.++-+|+.
T Consensus       178 ~~~~lD~Llrmf~aPn~et~vRve~~rlLEq~~~--aeN~d~va~~~-~~~Il~lAK~~e~~e~aR~~~~il~~mFKHSe  254 (832)
T KOG3678|consen  178 LDGGLDLLLRMFQAPNLETSVRVEAARLLEQILV--AENRDRVARIG-LGVILNLAKEREPVELARSVAGILEHMFKHSE  254 (832)
T ss_pred             ccchHHHHHHHHhCCchhHHHHHHHHHHHHHHHh--hhhhhHHhhcc-chhhhhhhhhcCcHHHHHHHHHHHHHHhhhhH
Confidence            34899999999988764  569999999988864  45677777766 6777777654 345778889999999999999


Q ss_pred             hcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHHhCCcHHHHHHhccCCChHHHHHHH
Q 015951          244 AGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKAL  323 (397)
Q Consensus       244 ~~~~~f~~~gGi~~L~~lL~s~~~d~klr~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~dv~E~aL  323 (397)
                      ...+.++.+||+..++--.+..  ++.+-+.++.+|.|.+.+    ..-..+..+++...-+.|.-+-.+.|.-++-+|.
T Consensus       255 et~~~Lvaa~~lD~vl~~~rRt--~P~lLRH~ALAL~N~~L~----~~~a~qrrmveKr~~EWLF~LA~skDel~R~~AC  328 (832)
T KOG3678|consen  255 ETCQRLVAAGGLDAVLYWCRRT--DPALLRHCALALGNCALH----GGQAVQRRMVEKRAAEWLFPLAFSKDELLRLHAC  328 (832)
T ss_pred             HHHHHHHhhcccchheeecccC--CHHHHHHHHHHhhhhhhh----chhHHHHHHHHhhhhhhhhhhhcchHHHHHHHHH
Confidence            9999999999999887777654  566888899999998763    2334455566667777777777777888999999


Q ss_pred             HHHHHHhcCChHHHHHHHhcCChHHHHHHH
Q 015951          324 AAIKNLLQLRTTEALVLKDFCGLDTALERL  353 (397)
Q Consensus       324 ~aL~~L~~~~~~~r~~~~~~~gL~~~L~~L  353 (397)
                      .|+..|+...+-. +.++ ..|-..+++-+
T Consensus       329 lAV~vlat~KE~E-~~Vr-kS~TlaLVEPl  356 (832)
T KOG3678|consen  329 LAVAVLATNKEVE-REVR-KSGTLALVEPL  356 (832)
T ss_pred             HHHhhhhhhhhhh-HHHh-hccchhhhhhh
Confidence            9999999886643 4455 34433444444

>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.61  E-value=0.0039  Score=67.56  Aligned_cols=219  Identities=19%  Similarity=0.193  Sum_probs=162.3

Q ss_pred             CCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhccCCCCchhHHHhcCCHHHHHHhcCC--CCHHHHHHHHHHHHHHhc
Q 015951          121 TPSDAQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNH--PDTDIRKISAWILGKASQ  198 (397)
Q Consensus       121 ~~~d~~lmk~~i~~L~~~~~s~e~k~~AL~~L~~Lve~iDnA~~~~~lGGl~~Li~lL~s--~~~~ir~~Aa~vLg~~aq  198 (397)
                      .++.++.+.++.+.+.+.. =+++|..|+..|--+....   +.-+...|++++|+.|..  .++++-..|..++..+..
T Consensus        17 ~~s~aETI~kLcDRvessT-L~eDRR~A~rgLKa~srkY---R~~Vga~Gmk~li~vL~~D~~D~E~ik~~LdTl~il~~   92 (970)
T KOG0946|consen   17 QQSAAETIEKLCDRVESST-LLEDRRDAVRGLKAFSRKY---REEVGAQGMKPLIQVLQRDYMDPEIIKYALDTLLILTS   92 (970)
T ss_pred             cccHHhHHHHHHHHHhhcc-chhhHHHHHHHHHHHHHHH---HHHHHHcccHHHHHHHhhccCCHHHHHHHHHHHHHHHh
Confidence            3567788888888888764 3577777766665443322   334556799999999954  789999999999999987


Q ss_pred             CCh--------H--------HHHHHHH-cCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChh-cHHHHHhc-CcHHHHH
Q 015951          199 NNP--------L--------VQKQVLE-LGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLA-GQEMFYVE-AGDLMLQ  259 (397)
Q Consensus       199 NNp--------~--------~Q~~vl~-~g~lp~Ll~LL~s~~~~v~~kAl~ALS~LiR~~~~-~~~~f~~~-gGi~~L~  259 (397)
                      +..        .        ..+.|++ .+-|..|+..+...+--||..++--|++++++-|. .++.+... -|+..|+
T Consensus        93 ~dd~~~v~dds~qsdd~g~~iae~fik~qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lm  172 (970)
T KOG0946|consen   93 HDDSPEVMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLM  172 (970)
T ss_pred             cCcchhhcccchhhhHHHHHHHHHHHcCchhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHH
Confidence            752        2        2334443 36788899999888888999999999999998655 45555554 6999999


Q ss_pred             HhhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHHhCCcHHHHHHhccCC---C-hHHHHHHHHHHHHHhcCChH
Q 015951          260 DILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASA---D-LDLQEKALAAIKNLLQLRTT  335 (397)
Q Consensus       260 ~lL~s~~~d~klr~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~---d-~dv~E~aL~aL~~L~~~~~~  335 (397)
                      .+|.+..  .-+|-.+..+|..|..     .++.....+.=.++...|.+++...   | --|.+-|+..|.+|+..+..
T Consensus       173 dlL~Dsr--E~IRNe~iLlL~eL~k-----~n~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N~S  245 (970)
T KOG0946|consen  173 DLLRDSR--EPIRNEAILLLSELVK-----DNSSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNNIS  245 (970)
T ss_pred             HHHhhhh--hhhchhHHHHHHHHHc-----cCchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhCcc
Confidence            9999763  3389999999999985     4555555555567777787777643   2 36889999999999999877


Q ss_pred             HHHHHHhcCChHHHHH
Q 015951          336 EALVLKDFCGLDTALE  351 (397)
Q Consensus       336 ~r~~~~~~~gL~~~L~  351 (397)
                      ....|+ .++--+.|.
T Consensus       246 NQ~~Fr-E~~~i~rL~  260 (970)
T KOG0946|consen  246 NQNFFR-EGSYIPRLL  260 (970)
T ss_pred             hhhHHh-ccccHHHHH
Confidence            778888 555433333

>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]

Probab=97.56  E-value=0.00069  Score=77.03  Aligned_cols=181  Identities=17%  Similarity=0.081  Sum_probs=137.4

Q ss_pred             HHHHHHHhccCCC--CchhHHHhcCCHHHHHHhc-CCCCHHHHHHHHHHHHHHhcCChHHHHHHHH-cCcHHHHHHhhcC
Q 015951          147 RALQELLILVEPI--DNANDLSKLGGLSVLVGQL-NHPDTDIRKISAWILGKASQNNPLVQKQVLE-LGALSKLMKMVKS  222 (397)
Q Consensus       147 ~AL~~L~~Lve~i--DnA~~~~~lGGl~~Li~lL-~s~~~~ir~~Aa~vLg~~aqNNp~~Q~~vl~-~g~lp~Ll~LL~s  222 (397)
                      ..-..|.+|-..-  .+...|...|-+..|..+- ....+.-......+|=+++.+..+.+..|.. -|+|..|+.+|.=
T Consensus       413 V~AsvLRNLSWRAD~nmKkvLrE~GsVtaLa~~al~~~kEsTLKavLSALWNLSAHcteNKA~iCaVDGALaFLVg~LSY  492 (2195)
T KOG2122|consen  413 VYASVLRNLSWRADSNMKKVLRETGSVTALAACALRNKKESTLKAVLSALWNLSAHCTENKAEICAVDGALAFLVGTLSY  492 (2195)
T ss_pred             HHHHHHHhccccccccHHHHHHhhhhHHHHHHHHHHhcccchHHHHHHHHhhhhhcccccchhhhcccchHHHHHhhccc
Confidence            3455666777654  4567888899999999764 4433333333344444444444444555554 4899999999985


Q ss_pred             CCH----HHHH---HHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcc
Q 015951          223 SFV----EEAV---KALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEP  295 (397)
Q Consensus       223 ~~~----~v~~---kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klr~kA~~lL~~L~~~~l~~~~~~~~  295 (397)
                      +.+    .+..   --|.-+|++|..+.+-++...+++-+..|.+.|++.  ...+..++|..|+||..     -++...
T Consensus       493 ~~qs~tLaIIEsaGGILRNVSS~IAt~E~yRQILR~~NCLq~LLQ~LKS~--SLTiVSNaCGTLWNLSA-----R~p~DQ  565 (2195)
T KOG2122|consen  493 EGQSNTLAIIESAGGILRNVSSLIATCEDYRQILRRHNCLQTLLQHLKSH--SLTIVSNACGTLWNLSA-----RSPEDQ  565 (2195)
T ss_pred             cCCcchhhhhhcCccHHHHHHhHhhccchHHHHHHHhhHHHHHHHHhhhc--ceEEeecchhhhhhhhc-----CCHHHH
Confidence            521    2333   457778889988888888899999999999999987  45678899999999985     478889


Q ss_pred             hhHHhCCcHHHHHHhccCCChHHHHHHHHHHHHHhcCCh
Q 015951          296 PLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLRT  334 (397)
Q Consensus       296 ~~l~~~g~v~~Lv~lL~~~d~dv~E~aL~aL~~L~~~~~  334 (397)
                      +.|.+.|.+..|-+++.+.+..+-+-++.||.||+...+
T Consensus       566 q~LwD~gAv~mLrnLIhSKhkMIa~GSaaALrNLln~RP  604 (2195)
T KOG2122|consen  566 QMLWDDGAVPMLRNLIHSKHKMIAMGSAAALRNLLNFRP  604 (2195)
T ss_pred             HHHHhcccHHHHHHHHhhhhhhhhhhHHHHHHHHhcCCc
Confidence            999999999999999999999999999999999998764

>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]

Probab=97.50  E-value=0.0006  Score=72.33  Aligned_cols=140  Identities=14%  Similarity=0.144  Sum_probs=113.1

Q ss_pred             CHHHHHHHHHHHH---hccCCCCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCcHHHHH
Q 015951          141 SLEDSQRALQELL---ILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLM  217 (397)
Q Consensus       141 s~e~k~~AL~~L~---~Lve~iDnA~~~~~lGGl~~Li~lL~s~~~~ir~~Aa~vLg~~aqNNp~~Q~~vl~~g~lp~Ll  217 (397)
                      +.+..-.|+..+.   ..|...++.  +-...|..+++++|..|+..|+..+..+|.+++-.-...|..|+.+|+|..|.
T Consensus       390 d~~~~aaa~l~~~s~srsV~aL~tg--~~~~dv~~plvqll~dp~~~i~~~~lgai~NlVmefs~~kskfl~~ngId~l~  467 (678)
T KOG1293|consen  390 DHDFVAAALLCLKSFSRSVSALRTG--LKRNDVAQPLVQLLMDPEIMIMGITLGAICNLVMEFSNLKSKFLRNNGIDILE  467 (678)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHcC--CccchhHHHHHHHhhCcchhHHHHHHHHHHHHHhhcccHHHHHHHcCcHHHHH
Confidence            3344444444444   344444444  66778999999999999999999999999999988778899999999999999


Q ss_pred             HhhcCCCHHHHHHHHHHHHHHhcCChh-cHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhh
Q 015951          218 KMVKSSFVEEAVKALYTVSSLIRNNLA-GQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAK  284 (397)
Q Consensus       218 ~LL~s~~~~v~~kAl~ALS~LiR~~~~-~~~~f~~~gGi~~L~~lL~s~~~d~klr~kA~~lL~~L~~  284 (397)
                      +++.+.+..+|.+++|+|..+.-+... -+.+++.-=|...|..+..++  +..+|..+..++.||.-
T Consensus       468 s~~~~~~~n~r~~~~~~Lr~l~f~~de~~k~~~~~ki~a~~i~~l~nd~--d~~Vqeq~fqllRNl~c  533 (678)
T KOG1293|consen  468 SMLTDPDFNSRANSLWVLRHLMFNCDEEEKFQLLAKIPANLILDLINDP--DWAVQEQCFQLLRNLTC  533 (678)
T ss_pred             HHhcCCCchHHHHHHHHHHHHHhcchHHHHHHHHHHhhHHHHHHHHhCC--CHHHHHHHHHHHHHhhc
Confidence            999999999999999999999887644 344555555777788888877  77899999999999974

>smart00185 ARM Armadillo/beta-catenin-like repeats

Probab=97.38  E-value=0.00034  Score=47.26  Aligned_cols=39  Identities=31%  Similarity=0.535  Sum_probs=36.0

Q ss_pred             CchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhc
Q 015951          160 DNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQ  198 (397)
Q Consensus       160 DnA~~~~~lGGl~~Li~lL~s~~~~ir~~Aa~vLg~~aq  198 (397)
                      +++..+...||+++|+++|.+++++++..|+|+|++++.
T Consensus         3 ~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~~   41 (41)
T smart00185        3 EQKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLSS   41 (41)
T ss_pred             HHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHcC
Confidence            477889999999999999999999999999999999873

Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.

>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments

Probab=97.35  E-value=0.011  Score=61.31  Aligned_cols=157  Identities=14%  Similarity=0.015  Sum_probs=119.1

Q ss_pred             HHHHHHhcC-CCCHHHHHHHHHHHHHHhcCChHHHHHHHHc-----CcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChh
Q 015951          171 LSVLVGQLN-HPDTDIRKISAWILGKASQNNPLVQKQVLEL-----GALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLA  244 (397)
Q Consensus       171 l~~Li~lL~-s~~~~ir~~Aa~vLg~~aqNNp~~Q~~vl~~-----g~lp~Ll~LL~s~~~~v~~kAl~ALS~LiR~~~~  244 (397)
                      ...++.+|+ .+.+++.......+..+.+.+|..-..|.+.     ....+++.+|..++..+..+|.+.|+.++...+.
T Consensus        55 ~~~~l~ll~~~~~~d~vqyvL~Li~dll~~~~~~~~~f~~~~~~~~~~~~~fl~lL~~~d~~i~~~a~~iLt~l~~~~~~  134 (429)
T cd00256          55 VKTFVNLLSQIDKDDTVRYVLTLIDDMLQEDDTRVKLFHDDALLKKKTWEPFFNLLNRQDQFIVHMSFSILAKLACFGLA  134 (429)
T ss_pred             HHHHHHHHhccCcHHHHHHHHHHHHHHHHhchHHHHHHHHHhhccccchHHHHHHHcCCchhHHHHHHHHHHHHHhcCcc
Confidence            345556774 5778999999999999999999888888876     4677888899888888899999999999876543


Q ss_pred             cHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHHhCCcHHHHHHhccCC--ChHHHHHH
Q 015951          245 GQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASA--DLDLQEKA  322 (397)
Q Consensus       245 ~~~~f~~~gGi~~L~~lL~s~~~d~klr~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~--d~dv~E~a  322 (397)
                      ........-=++.|...+++++ +...+.-++.++..|+.      .+..+..|.+.++++.|+.+|+..  +..++.++
T Consensus       135 ~~~~~~l~~~~~~l~~~l~~~~-~~~~~~~~v~~L~~LL~------~~~~R~~f~~~~~v~~L~~~L~~~~~~~Ql~Y~~  207 (429)
T cd00256         135 KMEGSDLDYYFNWLKEQLNNIT-NNDYVQTAARCLQMLLR------VDEYRFAFVLADGVPTLVKLLSNATLGFQLQYQS  207 (429)
T ss_pred             ccchhHHHHHHHHHHHHhhccC-CcchHHHHHHHHHHHhC------CchHHHHHHHccCHHHHHHHHhhccccHHHHHHH
Confidence            2221111112234566666542 34567778889999885      578888898888999999999763  67899999


Q ss_pred             HHHHHHHhcCCh
Q 015951          323 LAAIKNLLQLRT  334 (397)
Q Consensus       323 L~aL~~L~~~~~  334 (397)
                      +.|++-|+-..+
T Consensus       208 ll~lWlLSF~~~  219 (429)
T cd00256         208 IFCIWLLTFNPH  219 (429)
T ss_pred             HHHHHHHhccHH
Confidence            999999987754

The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.

>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=97.35  E-value=0.008  Score=67.50  Aligned_cols=179  Identities=18%  Similarity=0.225  Sum_probs=119.9

Q ss_pred             CHHHHHHHHHHHHhccCCCCchhHHHhc--CCHHHHHHhcCCCCHHHHHHHHHHHHHHhcC-ChHHHHHHHHcCcHHHHH
Q 015951          141 SLEDSQRALQELLILVEPIDNANDLSKL--GGLSVLVGQLNHPDTDIRKISAWILGKASQN-NPLVQKQVLELGALSKLM  217 (397)
Q Consensus       141 s~e~k~~AL~~L~~Lve~iDnA~~~~~l--GGl~~Li~lL~s~~~~ir~~Aa~vLg~~aqN-Np~~Q~~vl~~g~lp~Ll  217 (397)
                      +...|..||-.|.-+.|--  .+.+.+.  .-++.++++|+.++|-||..|+.+||-++.+ -|..|....+. .+|.|+
T Consensus       361 ~w~~R~AaL~Als~i~EGc--~~~m~~~l~~Il~~Vl~~l~DphprVr~AA~naigQ~stdl~p~iqk~~~e~-l~~aL~  437 (1075)
T KOG2171|consen  361 EWKERHAALLALSVIAEGC--SDVMIGNLPKILPIVLNGLNDPHPRVRYAALNAIGQMSTDLQPEIQKKHHER-LPPALI  437 (1075)
T ss_pred             CHHHHHHHHHHHHHHHccc--HHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhhhhhhcHHHHHHHHHh-ccHHHH
Confidence            5668888998888877642  2222221  3466677889999999999999999999987 45666666554 778899


Q ss_pred             HhhcCCC-HHHHHHHHHHHHHHhcCChhcHHHHHhcCcHH-HHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcc
Q 015951          218 KMVKSSF-VEEAVKALYTVSSLIRNNLAGQEMFYVEAGDL-MLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEP  295 (397)
Q Consensus       218 ~LL~s~~-~~v~~kAl~ALS~LiR~~~~~~~~f~~~gGi~-~L~~lL~s~~~d~klr~kA~~lL~~L~~~~l~~~~~~~~  295 (397)
                      ..+++.. ..++..|..|+=+..-.++...-.=+=-+-++ .+..++.++  ...+|..++++|.+.+.    .....+.
T Consensus       438 ~~ld~~~~~rV~ahAa~al~nf~E~~~~~~l~pYLd~lm~~~l~~L~~~~--~~~v~e~vvtaIasvA~----AA~~~F~  511 (1075)
T KOG2171|consen  438 ALLDSTQNVRVQAHAAAALVNFSEECDKSILEPYLDGLMEKKLLLLLQSS--KPYVQEQAVTAIASVAD----AAQEKFI  511 (1075)
T ss_pred             HHhcccCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHhcCC--chhHHHHHHHHHHHHHH----HHhhhhH
Confidence            9988754 56777788888777666655433222234444 344444444  56799999999999986    2344555


Q ss_pred             hhHHhCCcHHHHHHhccCCC-hHHH---HHHHHHHHHHh
Q 015951          296 PLFRDRFFLKSVVDLTASAD-LDLQ---EKALAAIKNLL  330 (397)
Q Consensus       296 ~~l~~~g~v~~Lv~lL~~~d-~dv~---E~aL~aL~~L~  330 (397)
                      +++  .-+++.|...|.+.+ .+.+   -++..|+.-+.
T Consensus       512 pY~--d~~Mp~L~~~L~n~~~~d~r~LrgktmEcisli~  548 (1075)
T KOG2171|consen  512 PYF--DRLMPLLKNFLQNADDKDLRELRGKTMECLSLIA  548 (1075)
T ss_pred             hHH--HHHHHHHHHHHhCCCchhhHHHHhhHHHHHHHHH
Confidence            554  246777777776653 4444   45555554444

>PTZ00429 beta-adaptin; Provisional

Probab=97.33  E-value=0.031  Score=61.78  Aligned_cols=165  Identities=15%  Similarity=0.103  Sum_probs=124.6

Q ss_pred             CHHHHHHHHHHHHhcc-CCCCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCcHHHHHHh
Q 015951          141 SLEDSQRALQELLILV-EPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKM  219 (397)
Q Consensus       141 s~e~k~~AL~~L~~Lv-e~iDnA~~~~~lGGl~~Li~lL~s~~~~ir~~Aa~vLg~~aqNNp~~Q~~vl~~g~lp~Ll~L  219 (397)
                      +...|..++..+-.+. ...|...      +++.++.++.+++.++|....-.+.+.+..+|+.-  +   -++..|.+=
T Consensus        45 ~~~~kk~alKkvIa~mt~G~DvS~------LF~dVvk~~~S~d~elKKLvYLYL~~ya~~~pela--l---LaINtl~KD  113 (746)
T PTZ00429         45 DSYRKKAAVKRIIANMTMGRDVSY------LFVDVVKLAPSTDLELKKLVYLYVLSTARLQPEKA--L---LAVNTFLQD  113 (746)
T ss_pred             CHHHHHHHHHHHHHHHHCCCCchH------HHHHHHHHhCCCCHHHHHHHHHHHHHHcccChHHH--H---HHHHHHHHH
Confidence            3466777776555433 4455433      77888899999999999999999999998887642  2   256777888


Q ss_pred             hcCCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHH
Q 015951          220 VKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFR  299 (397)
Q Consensus       220 L~s~~~~v~~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klr~kA~~lL~~L~~~~l~~~~~~~~~~l~  299 (397)
                      +.+.++-+|.-|+..+|++ |. +...+.     .+..+.+++.++  ++.+|++|+.++..+..     .+++   .+.
T Consensus       114 l~d~Np~IRaLALRtLs~I-r~-~~i~e~-----l~~~lkk~L~D~--~pYVRKtAalai~Kly~-----~~pe---lv~  176 (746)
T PTZ00429        114 TTNSSPVVRALAVRTMMCI-RV-SSVLEY-----TLEPLRRAVADP--DPYVRKTAAMGLGKLFH-----DDMQ---LFY  176 (746)
T ss_pred             cCCCCHHHHHHHHHHHHcC-Cc-HHHHHH-----HHHHHHHHhcCC--CHHHHHHHHHHHHHHHh-----hCcc---ccc
Confidence            8888889999999999987 32 222222     345678888876  67899999999999874     2333   345


Q ss_pred             hCCcHHHHHHhccCCChHHHHHHHHHHHHHhcCC
Q 015951          300 DRFFLKSVVDLTASADLDLQEKALAAIKNLLQLR  333 (397)
Q Consensus       300 ~~g~v~~Lv~lL~~~d~dv~E~aL~aL~~L~~~~  333 (397)
                      +.|+++.|.++|...|+.|+-.|+.+|..+....
T Consensus       177 ~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~~  210 (746)
T PTZ00429        177 QQDFKKDLVELLNDNNPVVASNAAAIVCEVNDYG  210 (746)
T ss_pred             ccchHHHHHHHhcCCCccHHHHHHHHHHHHHHhC
Confidence            6789999999999999999999999999987653

>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]

Probab=97.33  E-value=0.0079  Score=61.27  Aligned_cols=203  Identities=15%  Similarity=0.107  Sum_probs=145.7

Q ss_pred             CHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhccCCCCchhHHHhcCCHHHHHHhcCC--CCHHHHHHHHHHHHHHhcCC
Q 015951          123 SDAQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNH--PDTDIRKISAWILGKASQNN  200 (397)
Q Consensus       123 ~d~~lmk~~i~~L~~~~~s~e~k~~AL~~L~~Lve~iDnA~~~~~lGGl~~Li~lL~s--~~~~ir~~Aa~vLg~~aqNN  200 (397)
                      ++.++-+..++.+-+.+.+.+-...+...|..++.-....-.|....|...++..|.+  .+-.++=..+.|+=-++-|-
T Consensus       152 ~e~~~~~~~l~~~l~~~~~~~~~~~~~rcLQ~ll~~~eyR~~~v~adg~~~l~~~l~s~~~~~QlQYqsifciWlLtFn~  231 (442)
T KOG2759|consen  152 SELDVYKGFLKEQLQSSTNNDYIQFAARCLQTLLRVDEYRYAFVIADGVSLLIRILASTKCGFQLQYQSIFCIWLLTFNP  231 (442)
T ss_pred             hHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHhcCcchhheeeecCcchhhHHHHhccCcchhHHHHHHHHHHHhhcCH
Confidence            3555555555555444445566667777888877766777888889999999987733  45677778888888888764


Q ss_pred             hHHHHHHHHcCcHHHHHHhhcCCC-HHHHHHHHHHHHHHhcCChh-----------------------------------
Q 015951          201 PLVQKQVLELGALSKLMKMVKSSF-VEEAVKALYTVSSLIRNNLA-----------------------------------  244 (397)
Q Consensus       201 p~~Q~~vl~~g~lp~Ll~LL~s~~-~~v~~kAl~ALS~LiR~~~~-----------------------------------  244 (397)
                      + .-+.+...+.|+.|.++++++. +.|-+-.+..+.|++-..|.                                   
T Consensus       232 ~-~ae~~~~~~li~~L~~Ivk~~~KEKV~Rivlai~~Nll~k~~~~~~~k~~~~~mv~~~v~k~l~~L~~rkysDEDL~~  310 (442)
T KOG2759|consen  232 H-AAEKLKRFDLIQDLSDIVKESTKEKVTRIVLAIFRNLLDKGPDRETKKDIASQMVLCKVLKTLQSLEERKYSDEDLVD  310 (442)
T ss_pred             H-HHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCchHHHHHHHhcCCCcHHHHH
Confidence            4 5566778889999999998754 34555566666666555431                                   


Q ss_pred             ---------------------------------------------cHHHHHhc--CcHHHHHHhhcCCCccHHHHHHHHH
Q 015951          245 ---------------------------------------------GQEMFYVE--AGDLMLQDILGNSSFEIRLHRKAVS  277 (397)
Q Consensus       245 ---------------------------------------------~~~~f~~~--gGi~~L~~lL~s~~~d~klr~kA~~  277 (397)
                                                                   +...|.+.  .-+..|+.+|.+++ |+.+-.-|++
T Consensus       311 di~~L~e~L~~svq~LsSFDeY~sEl~sG~L~WSP~Hk~e~FW~eNa~rlnennyellkiL~~lLe~s~-Dp~iL~VAc~  389 (442)
T KOG2759|consen  311 DIEFLTEKLKNSVQDLSSFDEYKSELRSGRLEWSPVHKSEKFWRENADRLNENNYELLKILIKLLETSN-DPIILCVACH  389 (442)
T ss_pred             HHHHHHHHHHHHHHhhccHHHHHHHHHhCCcCCCccccccchHHHhHHHHhhccHHHHHHHHHHHhcCC-CCceeehhhh
Confidence                                                         44444432  24566677777553 3445555666


Q ss_pred             HHHHHhhchhccCCCCcchhHHhCCcHHHHHHhccCCChHHHHHHHHHHHHHhcC
Q 015951          278 LVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQL  332 (397)
Q Consensus       278 lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~dv~E~aL~aL~~L~~~  332 (397)
                      =|+..+.     ..|.-+..+.+-|.-+.++++++++|++|+-+|+.|+..|...
T Consensus       390 DIge~Vr-----~yP~gk~vv~k~ggKe~vM~Llnh~d~~Vry~ALlavQ~lm~~  439 (442)
T KOG2759|consen  390 DIGEYVR-----HYPEGKAVVEKYGGKERVMNLLNHEDPEVRYHALLAVQKLMVH  439 (442)
T ss_pred             hHHHHHH-----hCchHhHHHHHhchHHHHHHHhcCCCchHHHHHHHHHHHHHhh
Confidence            6666665     3677888889999999999999999999999999999998754

>COG5369 Uncharacterized conserved protein [Function unknown]

Probab=97.31  E-value=0.00068  Score=70.63  Aligned_cols=141  Identities=10%  Similarity=0.071  Sum_probs=114.6

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCC
Q 015951          187 KISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSS  266 (397)
Q Consensus       187 ~~Aa~vLg~~aqNNp~~Q~~vl~~g~lp~Ll~LL~s~~~~v~~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~  266 (397)
                      ..++.+|-.++..-...+.-..++.....|+++|+.+...+.--++.++++.+-.+.+-+..|+..|-+..|+..+.++ 
T Consensus       407 ~a~~l~LkS~SrSV~~LRTgL~d~~I~elLi~~Ls~Peimi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~sK-  485 (743)
T COG5369         407 VAIVLFLKSMSRSVTFLRTGLLDYPIVELLIDALSNPEIMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVMSK-  485 (743)
T ss_pred             HHHHHHHHHhhHHHHHHHhhccccchHHHHHHHhcCccceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhhcc-
Confidence            3455666777776666777777888899999999986666667789999999999999999999999999999999976 


Q ss_pred             ccHHHHHHHHHHHHHHhhchhccCCCC-cchhHHhCCcHHHHHHhccCCChHHHHHHHHHHHHHhcCCh
Q 015951          267 FEIRLHRKAVSLVGDLAKCQLENMHKV-EPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLRT  334 (397)
Q Consensus       267 ~d~klr~kA~~lL~~L~~~~l~~~~~~-~~~~l~~~g~v~~Lv~lL~~~d~dv~E~aL~aL~~L~~~~~  334 (397)
                       |..+|.++.|.+++++.+    .+.. ..+.+.+ -.+..++++.+.++-.+|++++..|+++.+++.
T Consensus       486 -DdaLqans~wvlrHlmyn----cq~~ekf~~Lak-ig~~kvl~~~NDpc~~vq~q~lQilrNftc~~~  548 (743)
T COG5369         486 -DDALQANSEWVLRHLMYN----CQKNEKFKFLAK-IGVEKVLSYTNDPCFKVQHQVLQILRNFTCDTS  548 (743)
T ss_pred             -hhhhhhcchhhhhhhhhc----CcchhhhhhHHh-cCHHHHHHHhcCcccccHHHHHHHHHhcccccc
Confidence             457999999999999873    2222 2334444 447889999999999999999999999999754

>smart00185 ARM Armadillo/beta-catenin-like repeats

Probab=97.22  E-value=0.00089  Score=45.17  Aligned_cols=39  Identities=26%  Similarity=0.348  Sum_probs=35.3

Q ss_pred             hHHHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHh
Q 015951          201 PLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLI  239 (397)
Q Consensus       201 p~~Q~~vl~~g~lp~Ll~LL~s~~~~v~~kAl~ALS~Li  239 (397)
                      +..+..+.+.|++|.|++++.+++..++..|++||++++
T Consensus         2 ~~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~   40 (41)
T smart00185        2 DEQKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLS   40 (41)
T ss_pred             cHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence            346778899999999999999888999999999999986

Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.

>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A

Probab=97.20  E-value=0.0012  Score=52.01  Aligned_cols=86  Identities=15%  Similarity=0.227  Sum_probs=66.2

Q ss_pred             HHHHHHhh-cCCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCC
Q 015951          213 LSKLMKMV-KSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMH  291 (397)
Q Consensus       213 lp~Ll~LL-~s~~~~v~~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klr~kA~~lL~~L~~~~l~~~~  291 (397)
                      ||.|++.| ++++..+|..|+++|+.+  +.+         ..++.|..+++++  +..+|..|++.|..+-.       
T Consensus         1 i~~L~~~l~~~~~~~vr~~a~~~L~~~--~~~---------~~~~~L~~~l~d~--~~~vr~~a~~aL~~i~~-------   60 (88)
T PF13646_consen    1 IPALLQLLQNDPDPQVRAEAARALGEL--GDP---------EAIPALIELLKDE--DPMVRRAAARALGRIGD-------   60 (88)
T ss_dssp             HHHHHHHHHTSSSHHHHHHHHHHHHCC--THH---------HHHHHHHHHHTSS--SHHHHHHHHHHHHCCHH-------
T ss_pred             CHHHHHHHhcCCCHHHHHHHHHHHHHc--CCH---------hHHHHHHHHHcCC--CHHHHHHHHHHHHHhCC-------
Confidence            68999999 777789999999999943  111         3488999999775  67899999999997632       


Q ss_pred             CCcchhHHhCCcHHHHHHhccCC-ChHHHHHHHHHHH
Q 015951          292 KVEPPLFRDRFFLKSVVDLTASA-DLDLQEKALAAIK  327 (397)
Q Consensus       292 ~~~~~~l~~~g~v~~Lv~lL~~~-d~dv~E~aL~aL~  327 (397)
                               ...++.|..++.++ +..+++.|..+|+
T Consensus        61 ---------~~~~~~L~~~l~~~~~~~vr~~a~~aL~   88 (88)
T PF13646_consen   61 ---------PEAIPALIKLLQDDDDEVVREAAAEALG   88 (88)
T ss_dssp             ---------HHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred             ---------HHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence                     34788888888776 5566888887764

>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10

Probab=97.09  E-value=0.0022  Score=53.49  Aligned_cols=66  Identities=15%  Similarity=0.258  Sum_probs=53.9

Q ss_pred             HHHHHHHHhccC-CCCchhHHHhcCCHHHHHHhc--CCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcC
Q 015951          146 QRALQELLILVE-PIDNANDLSKLGGLSVLVGQL--NHPDTDIRKISAWILGKASQNNPLVQKQVLELG  211 (397)
Q Consensus       146 ~~AL~~L~~Lve-~iDnA~~~~~lGGl~~Li~lL--~s~~~~ir~~Aa~vLg~~aqNNp~~Q~~vl~~g  211 (397)
                      ...+..+.++++ +..+.+.+...||+|.++++.  ...+|-+|++|.++|.+++.+|++.|+.+.+..
T Consensus         4 ~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~eNQ~~I~~L~   72 (102)
T PF09759_consen    4 RDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPENQEFIAQLE   72 (102)
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHHHHHHHHhcc
Confidence            344556666664 456777888999999999865  557899999999999999999999999988753

Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].

>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term

Probab=97.09  E-value=0.025  Score=57.75  Aligned_cols=186  Identities=17%  Similarity=0.143  Sum_probs=134.2

Q ss_pred             CCCCHHHHHHHHHHHHhccCCCCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCcHHHHH
Q 015951          138 STLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLM  217 (397)
Q Consensus       138 ~~~s~e~k~~AL~~L~~Lve~iDnA~~~~~lGGl~~Li~lL~s~~~~ir~~Aa~vLg~~aqNNp~~Q~~vl~~g~lp~Ll  217 (397)
                      ......+|+.||.-+..+++-.+..+. ...|.+..++.+..+++..+|..|..+|+.++--||   +.+.+.||+..|+
T Consensus        78 ~~~~~~ER~QALkliR~~l~~~~~~~~-~~~~vvralvaiae~~~D~lr~~cletL~El~l~~P---~lv~~~gG~~~L~  153 (371)
T PF14664_consen   78 DNKNDVEREQALKLIRAFLEIKKGPKE-IPRGVVRALVAIAEHEDDRLRRICLETLCELALLNP---ELVAECGGIRVLL  153 (371)
T ss_pred             cCCChHHHHHHHHHHHHHHHhcCCccc-CCHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhCH---HHHHHcCCHHHHH
Confidence            334567899999999988875443443 467888899999999999999999999999999988   4577899999999


Q ss_pred             HhhcCCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCC-----CccH--HHHHHHHHHHHHHhhchhccC
Q 015951          218 KMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNS-----SFEI--RLHRKAVSLVGDLAKCQLENM  290 (397)
Q Consensus       218 ~LL~s~~~~v~~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~-----~~d~--klr~kA~~lL~~L~~~~l~~~  290 (397)
                      +.+-+++.++....+.++-.++ ++|..++.+...-.++.+..-+.+.     +.+.  ..-..+..++..+..+     
T Consensus       154 ~~l~d~~~~~~~~l~~~lL~lL-d~p~tR~yl~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~Lrs-----  227 (371)
T PF14664_consen  154 RALIDGSFSISESLLDTLLYLL-DSPRTRKYLRPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRS-----  227 (371)
T ss_pred             HHHHhccHhHHHHHHHHHHHHh-CCcchhhhhcCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhc-----
Confidence            9998866566777777777776 5566666555444566666655433     1122  2344566677777652     


Q ss_pred             CCCcchhHH-hCCcHHHHHHhccCCChHHHHHHHHHHHHHhcCC
Q 015951          291 HKVEPPLFR-DRFFLKSVVDLTASADLDLQEKALAAIKNLLQLR  333 (397)
Q Consensus       291 ~~~~~~~l~-~~g~v~~Lv~lL~~~d~dv~E~aL~aL~~L~~~~  333 (397)
                      =+...-.-. +...++.+++.|..+++++++..+..+..+....
T Consensus       228 W~GLl~l~~~~~~~lksLv~~L~~p~~~ir~~Ildll~dllrik  271 (371)
T PF14664_consen  228 WPGLLYLSMNDFRGLKSLVDSLRLPNPEIRKAILDLLFDLLRIK  271 (371)
T ss_pred             CCceeeeecCCchHHHHHHHHHcCCCHHHHHHHHHHHHHHHCCC
Confidence            222221111 1257889999999999999999999999988763

>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]

Probab=97.07  E-value=0.0093  Score=52.37  Aligned_cols=109  Identities=14%  Similarity=0.059  Sum_probs=90.2

Q ss_pred             CHHHHHHHHHHHHhccCCCCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCcHHHHHHhh
Q 015951          141 SLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMV  220 (397)
Q Consensus       141 s~e~k~~AL~~L~~Lve~iDnA~~~~~lGGl~~Li~lL~s~~~~ir~~Aa~vLg~~aqNNp~~Q~~vl~~g~lp~Ll~LL  220 (397)
                      +.|.|+..+-+|.++.-+.-|=.-+..+..++.++..|..++..+...+...|+++|- .+...+.+++.+++|.++..+
T Consensus        30 ~~eakeqv~ANLANFAYDP~Nys~Lrql~vLdlFvdsl~e~ne~LvefgIgglCNlC~-d~~n~~~I~ea~g~plii~~l  108 (173)
T KOG4646|consen   30 NIEAKEQVTANLANFAYDPINYSHLRQLDVLDLFVDSLEEQNELLVEFGIGGLCNLCL-DKTNAKFIREALGLPLIIFVL  108 (173)
T ss_pred             cHHHHHHHHHHHHhhccCcchHHHHHHhhHHHHHHHHhhcccHHHHHHhHHHHHhhcc-ChHHHHHHHHhcCCceEEeec
Confidence            4578888889999988888888889999999999999999999999999999999996 588999999999999999999


Q ss_pred             cCCCHHHHHHHHHHHHHHhcCChhcHHHHH
Q 015951          221 KSSFVEEAVKALYTVSSLIRNNLAGQEMFY  250 (397)
Q Consensus       221 ~s~~~~v~~kAl~ALS~LiR~~~~~~~~f~  250 (397)
                      +|.+..+--.|+.++--+.-+...-...+.
T Consensus       109 ssp~e~tv~sa~~~l~~l~~~~Rt~r~ell  138 (173)
T KOG4646|consen  109 SSPPEITVHSAALFLQLLEFGERTERDELL  138 (173)
T ss_pred             CCChHHHHHHHHHHHHHhcCcccchhHHhc
Confidence            997776666666666666544433334433

>PTZ00429 beta-adaptin; Provisional

Probab=97.07  E-value=0.059  Score=59.64  Aligned_cols=205  Identities=12%  Similarity=0.135  Sum_probs=116.9

Q ss_pred             HhHHHHHHHHHhc-CCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhccC-CCCchhHHHhcCCHHHHHHhcCCCCHH
Q 015951          107 KRQMEIKELMEKL-KTPSDAQLIQIAIDDLNNSTLSLEDSQRALQELLILVE-PIDNANDLSKLGGLSVLVGQLNHPDTD  184 (397)
Q Consensus       107 ~r~~~L~ea~~~~-~~~~d~~lmk~~i~~L~~~~~s~e~k~~AL~~L~~Lve-~iDnA~~~~~lGGl~~Li~lL~s~~~~  184 (397)
                      +|++-+|+++..+ .+.+-..+.-..++.+.+.  +.+.|.-..--+..+.+ +.|.+-     =.+..+.+-|++++|-
T Consensus        48 ~kk~alKkvIa~mt~G~DvS~LF~dVvk~~~S~--d~elKKLvYLYL~~ya~~~pelal-----LaINtl~KDl~d~Np~  120 (746)
T PTZ00429         48 RKKAAVKRIIANMTMGRDVSYLFVDVVKLAPST--DLELKKLVYLYVLSTARLQPEKAL-----LAVNTFLQDTTNSSPV  120 (746)
T ss_pred             HHHHHHHHHHHHHHCCCCchHHHHHHHHHhCCC--CHHHHHHHHHHHHHHcccChHHHH-----HHHHHHHHHcCCCCHH
Confidence            3566666666555 3455555555566655443  45556555444444443 233221     1334455666777788


Q ss_pred             HHHHHHHHHHHHhcCChHHHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcC
Q 015951          185 IRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGN  264 (397)
Q Consensus       185 ir~~Aa~vLg~~aqNNp~~Q~~vl~~g~lp~Ll~LL~s~~~~v~~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s  264 (397)
                      +|..|.++++.+-  .|..-+.     .++.+.+.+.+.++-||++|+.|+..+.+.+|.   .+...|=++.|..+|.+
T Consensus       121 IRaLALRtLs~Ir--~~~i~e~-----l~~~lkk~L~D~~pYVRKtAalai~Kly~~~pe---lv~~~~~~~~L~~LL~D  190 (746)
T PTZ00429        121 VRALAVRTMMCIR--VSSVLEY-----TLEPLRRAVADPDPYVRKTAAMGLGKLFHDDMQ---LFYQQDFKKDLVELLND  190 (746)
T ss_pred             HHHHHHHHHHcCC--cHHHHHH-----HHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCcc---cccccchHHHHHHHhcC
Confidence            8888887777764  3433332     345566677777777777888777777766653   22233445566676665


Q ss_pred             CCccHHHHHHHHHHHHHHhhch---h--------------c---------------cCCCCcchhHHhCCcHHHHHHhcc
Q 015951          265 SSFEIRLHRKAVSLVGDLAKCQ---L--------------E---------------NMHKVEPPLFRDRFFLKSVVDLTA  312 (397)
Q Consensus       265 ~~~d~klr~kA~~lL~~L~~~~---l--------------~---------------~~~~~~~~~l~~~g~v~~Lv~lL~  312 (397)
                      .  +..+...|+.++..+..+.   +              .               ...|.....  ...++..+...|.
T Consensus       191 ~--dp~Vv~nAl~aL~eI~~~~~~~l~l~~~~~~~Ll~~L~e~~EW~Qi~IL~lL~~y~P~~~~e--~~~il~~l~~~Lq  266 (746)
T PTZ00429        191 N--NPVVASNAAAIVCEVNDYGSEKIESSNEWVNRLVYHLPECNEWGQLYILELLAAQRPSDKES--AETLLTRVLPRMS  266 (746)
T ss_pred             C--CccHHHHHHHHHHHHHHhCchhhHHHHHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCcHH--HHHHHHHHHHHhc
Confidence            4  4456777777777665320   0              0               001111111  1245556666677


Q ss_pred             CCChHHHHHHHHHHHHHhcC
Q 015951          313 SADLDLQEKALAAIKNLLQL  332 (397)
Q Consensus       313 ~~d~dv~E~aL~aL~~L~~~  332 (397)
                      +.++-|.-.|+.++..+...
T Consensus       267 ~~N~AVVl~Aik~il~l~~~  286 (746)
T PTZ00429        267 HQNPAVVMGAIKVVANLASR  286 (746)
T ss_pred             CCCHHHHHHHHHHHHHhcCc
Confidence            77888888888888888754

>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.99  E-value=0.067  Score=55.66  Aligned_cols=190  Identities=16%  Similarity=0.132  Sum_probs=123.8

Q ss_pred             CCCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCcHHHHHHhhcCCCH-HHH--------
Q 015951          158 PIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFV-EEA--------  228 (397)
Q Consensus       158 ~iDnA~~~~~lGGl~~Li~lL~s~~~~ir~~Aa~vLg~~aqNNp~~Q~~vl~~g~lp~Ll~LL~s~~~-~v~--------  228 (397)
                      -.+|.+++..+|-++.|+.+....+++++......+-+++-. ...+..++..|.+|.|..++.+++- .+.        
T Consensus       334 f~eNK~~M~~~~iveKL~klfp~~h~dL~~~tl~LlfNlSFD-~glr~KMv~~GllP~l~~ll~~d~~~~iA~~~lYh~S  412 (791)
T KOG1222|consen  334 FDENKIVMEQNGIVEKLLKLFPIQHPDLRKATLMLLFNLSFD-SGLRPKMVNGGLLPHLASLLDSDTKHGIALNMLYHLS  412 (791)
T ss_pred             hccchHHHHhccHHHHHHHhcCCCCHHHHHHHHHHhhhcccc-ccccHHHhhccchHHHHHHhCCcccchhhhhhhhhhc
Confidence            357899999999999999999999999999999999999874 5588899999999999999998752 222        


Q ss_pred             ----HHHHHH--------------------------HH-HHhcCChhcHHHHHhcCcHHHHHH-----------------
Q 015951          229 ----VKALYT--------------------------VS-SLIRNNLAGQEMFYVEAGDLMLQD-----------------  260 (397)
Q Consensus       229 ----~kAl~A--------------------------LS-~LiR~~~~~~~~f~~~gGi~~L~~-----------------  260 (397)
                          .|+++|                          ++ |++-+ ..+.+.+++-.|+..|+.                 
T Consensus       413 ~dD~~K~MfayTdci~~lmk~v~~~~~~~vdl~lia~ciNl~ln-kRNaQlvceGqgL~~LM~ra~k~~D~lLmK~vRni  491 (791)
T KOG1222|consen  413 CDDDAKAMFAYTDCIKLLMKDVLSGTGSEVDLALIALCINLCLN-KRNAQLVCEGQGLDLLMERAIKSRDLLLMKVVRNI  491 (791)
T ss_pred             cCcHHHHHHHHHHHHHHHHHHHHhcCCceecHHHHHHHHHHHhc-cccceEEecCcchHHHHHHHhcccchHHHHHHHHh
Confidence                233322                          11 11111 112222233334444332                 


Q ss_pred             --------------------hhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHHhCCcHHHHHHhccCC--ChHH
Q 015951          261 --------------------ILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASA--DLDL  318 (397)
Q Consensus       261 --------------------lL~s~~~d~klr~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~--d~dv  318 (397)
                                          +++.++ +..+-..+...+.+|..     .+-+....+.+..++|.+-..|..+  ..++
T Consensus       492 SqHeg~tqn~FidyvgdLa~i~~nd~-~E~F~~EClGtlanL~v-----~dldw~~ilq~~~LvPw~k~~L~pga~eddL  565 (791)
T KOG1222|consen  492 SQHEGATQNMFIDYVGDLAGIAKNDN-SESFGLECLGTLANLKV-----TDLDWAKILQSENLVPWMKTQLQPGADEDDL  565 (791)
T ss_pred             hhccchHHHHHHHHHHHHHHHhhcCc-hHHHHHHHHHHHhhccc-----CCCCHHHHHhhccccHHHHHhhcCCccchhh
Confidence                                222211 12233333333333332     1223344567788999988888764  4578


Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHHHHH
Q 015951          319 QEKALAAIKNLLQLRTTEALVLKDFCGLDTALERLRQQ  356 (397)
Q Consensus       319 ~E~aL~aL~~L~~~~~~~r~~~~~~~gL~~~L~~Lr~~  356 (397)
                      +-...-++++++.+.. |...+...+-++.+++.|+..
T Consensus       566 vL~~vi~~GT~a~d~~-cA~Lla~a~~i~tlieLL~a~  602 (791)
T KOG1222|consen  566 VLQIVIACGTMARDLD-CARLLAPAKLIDTLIELLQAC  602 (791)
T ss_pred             hhHHHHHhhhhhhhhH-HHHHhCccccHHHHHHHHHhh
Confidence            8888888899998854 888787556668888877654

>TIGR02270 conserved hypothetical protein

Probab=96.91  E-value=0.014  Score=60.28  Aligned_cols=153  Identities=15%  Similarity=0.083  Sum_probs=109.4

Q ss_pred             HHHHHHHHHhhCCCCCHHHHHHHHHHHHhccCCCCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHHHH
Q 015951          126 QLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQK  205 (397)
Q Consensus       126 ~lmk~~i~~L~~~~~s~e~k~~AL~~L~~Lve~iDnA~~~~~lGGl~~Li~lL~s~~~~ir~~Aa~vLg~~aqNNp~~Q~  205 (397)
                      ..+.-++..|...+ +.+....+.-.+..    .+.+.      ++..|+..|.++++++|..++..||.+-  .+    
T Consensus        54 ~a~~~L~~aL~~d~-~~ev~~~aa~al~~----~~~~~------~~~~L~~~L~d~~~~vr~aaa~ALg~i~--~~----  116 (410)
T TIGR02270        54 AATELLVSALAEAD-EPGRVACAALALLA----QEDAL------DLRSVLAVLQAGPEGLCAGIQAALGWLG--GR----  116 (410)
T ss_pred             hHHHHHHHHHhhCC-ChhHHHHHHHHHhc----cCChH------HHHHHHHHhcCCCHHHHHHHHHHHhcCC--ch----
Confidence            45666777774432 33444444444431    22222      3889999999999999999999999753  23    


Q ss_pred             HHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhc
Q 015951          206 QVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKC  285 (397)
Q Consensus       206 ~vl~~g~lp~Ll~LL~s~~~~v~~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klr~kA~~lL~~L~~~  285 (397)
                           ++.+.|+.+|+++++.+|..++.+++..  .          ..-.+.|..+|++.  +..++..|+.++..+-. 
T Consensus       117 -----~a~~~L~~~L~~~~p~vR~aal~al~~r--~----------~~~~~~L~~~L~d~--d~~Vra~A~raLG~l~~-  176 (410)
T TIGR02270       117 -----QAEPWLEPLLAASEPPGRAIGLAALGAH--R----------HDPGPALEAALTHE--DALVRAAALRALGELPR-  176 (410)
T ss_pred             -----HHHHHHHHHhcCCChHHHHHHHHHHHhh--c----------cChHHHHHHHhcCC--CHHHHHHHHHHHHhhcc-
Confidence                 5788899999998888998888777651  1          12234678888865  67799999999998853 


Q ss_pred             hhccCCCCcchhHHhCCcHHHHHHhccCCChHHHHHHHHHHHHHh
Q 015951          286 QLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLL  330 (397)
Q Consensus       286 ~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~dv~E~aL~aL~~L~  330 (397)
                                     ...++.|...+.+.|+.|+..|+.++..+-
T Consensus       177 ---------------~~a~~~L~~al~d~~~~VR~aA~~al~~lG  206 (410)
T TIGR02270       177 ---------------RLSESTLRLYLRDSDPEVRFAALEAGLLAG  206 (410)
T ss_pred             ---------------ccchHHHHHHHcCCCHHHHHHHHHHHHHcC
Confidence                           245566777789999999999998886663

Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.

>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]

Probab=96.89  E-value=0.033  Score=62.33  Aligned_cols=136  Identities=18%  Similarity=0.197  Sum_probs=105.2

Q ss_pred             HHHHHHHHHHhccC-CCCchhHHHh----cCCHHHHHHhc-CCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCcHHHHH
Q 015951          144 DSQRALQELLILVE-PIDNANDLSK----LGGLSVLVGQL-NHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLM  217 (397)
Q Consensus       144 ~k~~AL~~L~~Lve-~iDnA~~~~~----lGGl~~Li~lL-~s~~~~ir~~Aa~vLg~~aqNNp~~Q~~vl~~g~lp~Ll  217 (397)
                      ..+-+|..|.+++. +.|.|-.|..    +|.++.++.+| .+.++.++..|..+|..+..| ..|-..+...|.+..|+
T Consensus      1741 ~v~m~LtAL~Nli~~nPdlasvfgSe~~lig~F~l~~~~lr~~~~~~iq~LaL~Vi~~~Tan-~~Cv~~~a~~~vL~~LL 1819 (2235)
T KOG1789|consen 1741 KVLMTLTALANLVSANPDLASVFGSEILLIGNFPLLITYLRCRKHPKLQILALQVILLATAN-KECVTDLATCNVLTTLL 1819 (2235)
T ss_pred             HHHHHHHHHHHHHhhCcchhhhccchhhhhcccHHHHHHHHHcCCchHHHHHHHHHHHHhcc-cHHHHHHHhhhHHHHHH
Confidence            33457888888874 6788877755    58899999888 458899999999999988875 45888899999999999


Q ss_pred             HhhcCCCHHHHH---HHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhch
Q 015951          218 KMVKSSFVEEAV---KALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQ  286 (397)
Q Consensus       218 ~LL~s~~~~v~~---kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klr~kA~~lL~~L~~~~  286 (397)
                      +||.|.+ +.|.   ..+|||++    ++....+-.++||+..+..++-..+ ....|..|+.++..|...+
T Consensus      1820 ~lLHS~P-S~R~~vL~vLYAL~S----~~~i~keA~~hg~l~yil~~~c~~~-~~QqRAqaAeLlaKl~Adk 1885 (2235)
T KOG1789|consen 1820 TLLHSQP-SMRARVLDVLYALSS----NGQIGKEALEHGGLMYILSILCLTN-SDQQRAQAAELLAKLQADK 1885 (2235)
T ss_pred             HHHhcCh-HHHHHHHHHHHHHhc----CcHHHHHHHhcCchhhhhHHHhccC-cHHHHHHHHHHHHHhhhcc
Confidence            9999854 3454   45566554    4566667778999998888776542 4557888999999998654

>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]

Probab=96.88  E-value=0.011  Score=51.95  Aligned_cols=127  Identities=10%  Similarity=0.051  Sum_probs=96.9

Q ss_pred             HHHHHH-hcCCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHH
Q 015951          171 LSVLVG-QLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMF  249 (397)
Q Consensus       171 l~~Li~-lL~s~~~~ir~~Aa~vLg~~aqNNp~~Q~~vl~~g~lp~Ll~LL~s~~~~v~~kAl~ALS~LiR~~~~~~~~f  249 (397)
                      +..|+. +=+.++.+-+.....-|++.+. .|..-....+.+++..++..+...++.+.+-++.+|+|++-+ +.+..-+
T Consensus        18 lq~LV~efq~tt~~eakeqv~ANLANFAY-DP~Nys~Lrql~vLdlFvdsl~e~ne~LvefgIgglCNlC~d-~~n~~~I   95 (173)
T KOG4646|consen   18 LQHLVDEFQTTTNIEAKEQVTANLANFAY-DPINYSHLRQLDVLDLFVDSLEEQNELLVEFGIGGLCNLCLD-KTNAKFI   95 (173)
T ss_pred             HHHHHHHHHHhccHHHHHHHHHHHHhhcc-CcchHHHHHHhhHHHHHHHHhhcccHHHHHHhHHHHHhhccC-hHHHHHH
Confidence            444553 3456788888888888888885 699999999999999999999998988999999999999875 5666777


Q ss_pred             HhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHHhCCcHHH
Q 015951          250 YVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKS  306 (397)
Q Consensus       250 ~~~gGi~~L~~lL~s~~~d~klr~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~  306 (397)
                      .+++|++.++.++.|+  ...+-.-|+.++..|+.     .+-..++.+....+++.
T Consensus        96 ~ea~g~plii~~lssp--~e~tv~sa~~~l~~l~~-----~~Rt~r~ell~p~Vv~~  145 (173)
T KOG4646|consen   96 REALGLPLIIFVLSSP--PEITVHSAALFLQLLEF-----GERTERDELLSPAVVRT  145 (173)
T ss_pred             HHhcCCceEEeecCCC--hHHHHHHHHHHHHHhcC-----cccchhHHhccHHHHHH
Confidence            8899999999999987  33355666777777764     34455555554444433

>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]

Probab=96.82  E-value=0.021  Score=56.85  Aligned_cols=154  Identities=11%  Similarity=0.083  Sum_probs=118.1

Q ss_pred             HHHHHHhcCCCCHHHHHHHHHHHHHHhcCCh--HHHHH--HHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcH
Q 015951          171 LSVLVGQLNHPDTDIRKISAWILGKASQNNP--LVQKQ--VLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQ  246 (397)
Q Consensus       171 l~~Li~lL~s~~~~ir~~Aa~vLg~~aqNNp--~~Q~~--vl~~g~lp~Ll~LL~s~~~~v~~kAl~ALS~LiR~~~~~~  246 (397)
                      .|.|-.-|.+++..++..||.-||.+..|..  .+.+.  +++.|.+|.++..+-.++.+|...|+..|+.+.+ +|.+.
T Consensus        84 mpdLQrGLiaddasVKiLackqigcilEdcDtnaVseillvvNaeilklildcIggeddeVAkAAiesikrial-fpaal  162 (524)
T KOG4413|consen   84 MPDLQRGLIADDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIGGEDDEVAKAAIESIKRIAL-FPAAL  162 (524)
T ss_pred             hHHHHhcccCCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHh-cHHHH
Confidence            4555567889999999999999999998866  34333  4478999999999999999999999999999987 67888


Q ss_pred             HHHHhcCcHHH--HHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHHhCCcHHHHHHhccC-CChHHHHHHH
Q 015951          247 EMFYVEAGDLM--LQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTAS-ADLDLQEKAL  323 (397)
Q Consensus       247 ~~f~~~gGi~~--L~~lL~s~~~d~klr~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~-~d~dv~E~aL  323 (397)
                      ..++..+-...  ++.+-... .+ -.|.++..++-.+.+     ..+.........|++..|..-|+. .|.-++-.++
T Consensus       163 eaiFeSellDdlhlrnlaakc-nd-iaRvRVleLIieifS-----iSpesaneckkSGLldlLeaElkGteDtLVianci  235 (524)
T KOG4413|consen  163 EAIFESELLDDLHLRNLAAKC-ND-IARVRVLELIIEIFS-----ISPESANECKKSGLLDLLEAELKGTEDTLVIANCI  235 (524)
T ss_pred             HHhcccccCChHHHhHHHhhh-hh-HHHHHHHHHHHHHHh-----cCHHHHhHhhhhhHHHHHHHHhcCCcceeehhhHH
Confidence            88776654443  33332222 23 378888999888875     355566667778999888777766 6888888888


Q ss_pred             HHHHHHhcC
Q 015951          324 AAIKNLLQL  332 (397)
Q Consensus       324 ~aL~~L~~~  332 (397)
                      ..+..|+..
T Consensus       236 ElvteLaet  244 (524)
T KOG4413|consen  236 ELVTELAET  244 (524)
T ss_pred             HHHHHHHHH
Confidence            888888865

>PF05536 Neurochondrin: Neurochondrin

Probab=96.74  E-value=0.079  Score=56.70  Aligned_cols=156  Identities=15%  Similarity=0.109  Sum_probs=120.8

Q ss_pred             CHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHH---HHHHHHcCcHHHHHHhhcCCC-------HHHHHHHHHHHHHHh
Q 015951          170 GLSVLVGQLNHPDTDIRKISAWILGKASQNNPLV---QKQVLELGALSKLMKMVKSSF-------VEEAVKALYTVSSLI  239 (397)
Q Consensus       170 Gl~~Li~lL~s~~~~ir~~Aa~vLg~~aqNNp~~---Q~~vl~~g~lp~Ll~LL~s~~-------~~v~~kAl~ALS~Li  239 (397)
                      .+...+.+|++.+.+=|..+.-.+.+++.+++..   ++.+.+.=|.+-|-+||.+..       ...+.-|+.-|++.+
T Consensus         6 ~l~~c~~lL~~~~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~f~   85 (543)
T PF05536_consen    6 SLEKCLSLLKSADDTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAAFC   85 (543)
T ss_pred             HHHHHHHHhccCCcHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHc
Confidence            3566788899988899999999999999988743   345777777788889998732       345777888888888


Q ss_pred             cCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHHhCCcHHHHHHhccCCChHHH
Q 015951          240 RNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQ  319 (397)
Q Consensus       240 R~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klr~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~dv~  319 (397)
                      +. |.....---.+-+|.|+.++.+++ +..+...+..+|..++.      +++-+..+.+.|.++.|++.+.+ .+...
T Consensus        86 ~~-~~~a~~~~~~~~IP~Lle~l~~~s-~~~~v~dalqcL~~Ias------~~~G~~aLl~~g~v~~L~ei~~~-~~~~~  156 (543)
T PF05536_consen   86 RD-PELASSPQMVSRIPLLLEILSSSS-DLETVDDALQCLLAIAS------SPEGAKALLESGAVPALCEIIPN-QSFQM  156 (543)
T ss_pred             CC-hhhhcCHHHHHHHHHHHHHHHcCC-chhHHHHHHHHHHHHHc------CcHhHHHHHhcCCHHHHHHHHHh-CcchH
Confidence            73 332222222477999999998763 34688899999999984      66778889999999999999887 56789


Q ss_pred             HHHHHHHHHHhcCCh
Q 015951          320 EKALAAIKNLLQLRT  334 (397)
Q Consensus       320 E~aL~aL~~L~~~~~  334 (397)
                      |.|+.++.+++....
T Consensus       157 E~Al~lL~~Lls~~~  171 (543)
T PF05536_consen  157 EIALNLLLNLLSRLG  171 (543)
T ss_pred             HHHHHHHHHHHHhcc
Confidence            999999999887643

>PF11841 DUF3361: Domain of unknown function (DUF3361)

Probab=96.72  E-value=0.025  Score=50.88  Aligned_cols=121  Identities=17%  Similarity=0.134  Sum_probs=97.6

Q ss_pred             chhHHHhcCCHHHHHHhcCCCC------HHHHHHHHHHHHHHhcCChHHHHHHHHcCcHHHHHHhhcCCC--HHHHHHHH
Q 015951          161 NANDLSKLGGLSVLVGQLNHPD------TDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSF--VEEAVKAL  232 (397)
Q Consensus       161 nA~~~~~lGGl~~Li~lL~s~~------~~ir~~Aa~vLg~~aqNNp~~Q~~vl~~g~lp~Ll~LL~s~~--~~v~~kAl  232 (397)
                      .|..|++.||++.|+..+.++.      .++-..+..+.-.+....--..+ .+....+.+++..++...  ..+...|+
T Consensus         3 FA~EFI~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg~vsWd-~l~~~FI~Kia~~Vn~~~~d~~i~q~sL   81 (160)
T PF11841_consen    3 FAQEFISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHGIVSWD-TLSDSFIKKIASYVNSSAMDASILQRSL   81 (160)
T ss_pred             hHHHHHhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcCcCchh-hccHHHHHHHHHHHccccccchHHHHHH
Confidence            5889999999999999997654      47778888888887776543443 455567889999998654  56788899


Q ss_pred             HHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhh
Q 015951          233 YTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAK  284 (397)
Q Consensus       233 ~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klr~kA~~lL~~L~~  284 (397)
                      .-|=+++-+++.....+-+.=-++-|+..|+.+  +..+|.+|..++..|..
T Consensus        82 aILEs~Vl~S~~ly~~V~~evt~~~Li~hLq~~--~~~iq~naiaLinAL~~  131 (160)
T PF11841_consen   82 AILESIVLNSPKLYQLVEQEVTLESLIRHLQVS--NQEIQTNAIALINALFL  131 (160)
T ss_pred             HHHHHHHhCCHHHHHHHhccCCHHHHHHHHHcC--CHHHHHHHHHHHHHHHh
Confidence            999999998877777777777899999999985  56799999999999986

>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=96.71  E-value=0.003  Score=54.03  Aligned_cols=72  Identities=22%  Similarity=0.279  Sum_probs=63.9

Q ss_pred             CHHHHHHhc-CCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcC
Q 015951          170 GLSVLVGQL-NHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRN  241 (397)
Q Consensus       170 Gl~~Li~lL-~s~~~~ir~~Aa~vLg~~aqNNp~~Q~~vl~~g~lp~Ll~LL~s~~~~v~~kAl~ALS~LiR~  241 (397)
                      .+..|+.+| ++.++.+..-||.=||..++..|..+..+-+.|+=..++.|+.+++++||..|+.|+.-++.+
T Consensus        44 llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~~  116 (119)
T PF11698_consen   44 LLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLMVN  116 (119)
T ss_dssp             HHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHHHh
Confidence            467788999 667899999999999999999999999999999999999999999999999999999988764

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.

>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []

Probab=96.63  E-value=0.045  Score=49.48  Aligned_cols=112  Identities=15%  Similarity=0.109  Sum_probs=79.1

Q ss_pred             cHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChh-cHHHHHhcCcHHHHHHhhcCC-------CccHHHHHHHHHHHHHHh
Q 015951          212 ALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLA-GQEMFYVEAGDLMLQDILGNS-------SFEIRLHRKAVSLVGDLA  283 (397)
Q Consensus       212 ~lp~Ll~LL~s~~~~v~~kAl~ALS~LiR~~~~-~~~~f~~~gGi~~L~~lL~s~-------~~d~klr~kA~~lL~~L~  283 (397)
                      ....+++.+.+.+...  +.+..|.-.+|..+. -.+.|++.||+..|..+|..-       ..+......++.++..|+
T Consensus        67 ~p~~~i~~L~~~~~~~--~~L~~L~v~Lrt~~~~Wv~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal~  144 (187)
T PF06371_consen   67 SPEWYIKKLKSRPSTS--KILKSLRVSLRTNPISWVQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKALM  144 (187)
T ss_dssp             HHHHHHHHHTTT--HH--HHHHHHHHHHHHS-HHHHHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHHT
T ss_pred             hHHHHHHHHHccCccH--HHHHHHHHHhccCCchHHHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHH
Confidence            3455666666544322  778888888887654 478999999999999998521       134457888999999998


Q ss_pred             hchhccCCCCcchhHHhCCcHHHHHHhccCCChHHHHHHHHHHHHHh
Q 015951          284 KCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLL  330 (397)
Q Consensus       284 ~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~dv~E~aL~aL~~L~  330 (397)
                      .+     .......+...+++..++..|.++++.++..++..|..++
T Consensus       145 n~-----~~G~~~v~~~~~~v~~i~~~L~s~~~~~r~~~leiL~~lc  186 (187)
T PF06371_consen  145 NT-----KYGLEAVLSHPDSVNLIALSLDSPNIKTRKLALEILAALC  186 (187)
T ss_dssp             SS-----HHHHHHHHCSSSHHHHHHHT--TTSHHHHHHHHHHHHHHH
T ss_pred             cc-----HHHHHHHHcCcHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Confidence            53     2234445566899999999999999999999998887764

Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.

>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]

Probab=96.62  E-value=0.033  Score=60.37  Aligned_cols=142  Identities=13%  Similarity=0.137  Sum_probs=96.7

Q ss_pred             HHhcCCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCcHHHHHHhhcCCCHHHH---HHHHHHHHHHh---cCChhcHHH
Q 015951          175 VGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEA---VKALYTVSSLI---RNNLAGQEM  248 (397)
Q Consensus       175 i~lL~s~~~~ir~~Aa~vLg~~aqNNp~~Q~~vl~~g~lp~Ll~LL~s~~~~v~---~kAl~ALS~Li---R~~~~~~~~  248 (397)
                      +..|++..+.+|.+|+..++.++.--..|++.-+=...--.|...|..+.+++-   .+|++||.|.+   .-.||.   
T Consensus       805 L~rLnnksa~vRqqaadlis~la~Vlktc~ee~~m~~lGvvLyEylgeeypEvLgsILgAikaI~nvigm~km~pPi---  881 (1172)
T KOG0213|consen  805 LWRLNNKSAKVRQQAADLISSLAKVLKTCGEEKLMGHLGVVLYEYLGEEYPEVLGSILGAIKAIVNVIGMTKMTPPI---  881 (1172)
T ss_pred             HHHhcCCChhHHHHHHHHHHHHHHHHHhccHHHHHHHhhHHHHHhcCcccHHHHHHHHHHHHHHHHhccccccCCCh---
Confidence            456789999999999999999985433344332211122346677877777774   45666666544   123443   


Q ss_pred             HHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCC---cchhHHhCCcHHHHHHhccCCChHHHHHHHHH
Q 015951          249 FYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKV---EPPLFRDRFFLKSVVDLTASADLDLQEKALAA  325 (397)
Q Consensus       249 f~~~gGi~~L~~lL~s~~~d~klr~kA~~lL~~L~~~~l~~~~~~---~~~~l~~~g~v~~Lv~lL~~~d~dv~E~aL~a  325 (397)
                         .+-++.|..+|++.  ..|++.+..-++..++..     .++   .+++.   -+|=-|+++|++-+..++..|..+
T Consensus       882 ---~dllPrltPILknr--heKVqen~IdLvg~Iadr-----gpE~v~aREWM---RIcfeLlelLkahkK~iRRaa~nT  948 (1172)
T KOG0213|consen  882 ---KDLLPRLTPILKNR--HEKVQENCIDLVGTIADR-----GPEYVSAREWM---RICFELLELLKAHKKEIRRAAVNT  948 (1172)
T ss_pred             ---hhhcccchHhhhhh--HHHHHHHHHHHHHHHHhc-----CcccCCHHHHH---HHHHHHHHHHHHHHHHHHHHHHhh
Confidence               24578899999987  679999999999999973     233   33443   355567788888778888888887


Q ss_pred             HHHHhcC
Q 015951          326 IKNLLQL  332 (397)
Q Consensus       326 L~~L~~~  332 (397)
                      ++.++..
T Consensus       949 fG~Iaka  955 (1172)
T KOG0213|consen  949 FGYIAKA  955 (1172)
T ss_pred             hhHHHHh
Confidence            7777643

>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]

Probab=96.60  E-value=0.045  Score=60.13  Aligned_cols=164  Identities=16%  Similarity=0.206  Sum_probs=118.9

Q ss_pred             HHHHHHHHHHHHhccCCCCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCcHHHHHHhhc
Q 015951          142 LEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVK  221 (397)
Q Consensus       142 ~e~k~~AL~~L~~Lve~iDnA~~~~~lGGl~~Li~lL~s~~~~ir~~Aa~vLg~~aqNNp~~Q~~vl~~g~lp~Ll~LL~  221 (397)
                      ...|..|+..+--   ++-+.+++-.  .++-+++...+.+.++|..----+-..++.+|  +..++   +++.+.+=+.
T Consensus        33 ~~~kidAmK~iIa---~M~~G~dmss--Lf~dViK~~~trd~ElKrL~ylYl~~yak~~P--~~~lL---avNti~kDl~  102 (757)
T COG5096          33 DYKKIDAMKKIIA---QMSLGEDMSS--LFPDVIKNVATRDVELKRLLYLYLERYAKLKP--ELALL---AVNTIQKDLQ  102 (757)
T ss_pred             hHHHHHHHHHHHH---HHhcCCChHH--HHHHHHHHHHhcCHHHHHHHHHHHHHHhccCH--HHHHH---HHHHHHhhcc
Confidence            4556666554432   2222233222  46777777778889999999999999999999  44443   5778888888


Q ss_pred             CCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHHhC
Q 015951          222 SSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDR  301 (397)
Q Consensus       222 s~~~~v~~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klr~kA~~lL~~L~~~~l~~~~~~~~~~l~~~  301 (397)
                      ++++.+|..|+..+|.+ |..     ++. -.-+.++.+++.++  +..+|+.|+.++..+-+        -....+.+.
T Consensus       103 d~N~~iR~~AlR~ls~l-~~~-----el~-~~~~~~ik~~l~d~--~ayVRk~Aalav~kly~--------ld~~l~~~~  165 (757)
T COG5096         103 DPNEEIRGFALRTLSLL-RVK-----ELL-GNIIDPIKKLLTDP--HAYVRKTAALAVAKLYR--------LDKDLYHEL  165 (757)
T ss_pred             CCCHHHHHHHHHHHHhc-ChH-----HHH-HHHHHHHHHHccCC--cHHHHHHHHHHHHHHHh--------cCHhhhhcc
Confidence            88999999999999976 432     221 23567889999887  45799999999999874        123345677


Q ss_pred             CcHHHHHHhccCCChHHHHHHHHHHHHHhcC
Q 015951          302 FFLKSVVDLTASADLDLQEKALAAIKNLLQL  332 (397)
Q Consensus       302 g~v~~Lv~lL~~~d~dv~E~aL~aL~~L~~~  332 (397)
                      |.+..+..++...|+.|...|+.+|..+-..
T Consensus       166 g~~~~l~~l~~D~dP~Vi~nAl~sl~~i~~e  196 (757)
T COG5096         166 GLIDILKELVADSDPIVIANALASLAEIDPE  196 (757)
T ss_pred             cHHHHHHHHhhCCCchHHHHHHHHHHHhchh
Confidence            8999999999999999999999888877653

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=96.60  E-value=0.02  Score=63.88  Aligned_cols=126  Identities=15%  Similarity=0.079  Sum_probs=110.3

Q ss_pred             CCCchhHHHhcCCHHHHHHhcCC-C--CHHHHHHHHHHHHHHhcCChHHHHHHHHcCcHHHHHHhhcCCC-HHHHHHHHH
Q 015951          158 PIDNANDLSKLGGLSVLVGQLNH-P--DTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSF-VEEAVKALY  233 (397)
Q Consensus       158 ~iDnA~~~~~lGGl~~Li~lL~s-~--~~~ir~~Aa~vLg~~aqNNp~~Q~~vl~~g~lp~Ll~LL~s~~-~~v~~kAl~  233 (397)
                      +..+--+++|-+|....++.|.. +  +++-|..||.+|+.++.|.+.-|+..++.+.|..-+..+.++. +-+|-=.+-
T Consensus       543 D~SCQ~dLvKe~g~~YF~~vL~~~~~~~~EqrtmaAFVLAviv~nf~lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~i  622 (1387)
T KOG1517|consen  543 DPSCQADLVKENGYKYFLQVLDPSQAIPPEQRTMAAFVLAVIVRNFKLGQKACLNGNLIGICLEHLNDDPEPLLRQWLCI  622 (1387)
T ss_pred             CchhHHHHHhccCceeEEEEecCcCCCCHHHHHHHHHHHHHHHcccchhHHHhccccHHHHHHHHhcCCccHHHHHHHHH
Confidence            34455689999999999999865 2  4699999999999999999999999999999999999999864 446777888


Q ss_pred             HHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhc
Q 015951          234 TVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKC  285 (397)
Q Consensus       234 ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klr~kA~~lL~~L~~~  285 (397)
                      +|+-|=.+|+.++-.-...++.+.|..+|.++  -+.+|..|+|+|..+..+
T Consensus       623 cLG~LW~d~~~Arw~G~r~~AhekL~~~LsD~--vpEVRaAAVFALgtfl~~  672 (1387)
T KOG1517|consen  623 CLGRLWEDYDEARWSGRRDNAHEKLILLLSDP--VPEVRAAAVFALGTFLSN  672 (1387)
T ss_pred             HHHHHhhhcchhhhccccccHHHHHHHHhcCc--cHHHHHHHHHHHHHHhcc
Confidence            99999999999888888899999999999986  567899999999999874

>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []

Probab=96.50  E-value=0.21  Score=49.71  Aligned_cols=196  Identities=17%  Similarity=0.109  Sum_probs=115.2

Q ss_pred             HHHHHHHhhCCCCCHHHHHHHHHHHHhccCCCCchhHHHh--cCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcC---ChH
Q 015951          128 IQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSK--LGGLSVLVGQLNHPDTDIRKISAWILGKASQN---NPL  202 (397)
Q Consensus       128 mk~~i~~L~~~~~s~e~k~~AL~~L~~Lve~iDnA~~~~~--lGGl~~Li~lL~s~~~~ir~~Aa~vLg~~aqN---Np~  202 (397)
                      ++++|+.+.+..  ...|+.+|..+..++...-....+.+  .-.++.+...++.+..+=+..|+.+++-++=.   .+.
T Consensus        45 L~~~Id~l~eK~--~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~  122 (309)
T PF05004_consen   45 LKEAIDLLTEKS--SSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGED  122 (309)
T ss_pred             HHHHHHHHHhcC--HHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCcc
Confidence            555666665553  57889999999887743322322222  23467777888887777788999999988643   233


Q ss_pred             HHHHHHHcCcHHHHHHhhcCCCH--HHHHHHHHHHHHHhcCChhcHHHHHh-cCcHH--HHHHhhcCCC--------ccH
Q 015951          203 VQKQVLELGALSKLMKMVKSSFV--EEAVKALYTVSSLIRNNLAGQEMFYV-EAGDL--MLQDILGNSS--------FEI  269 (397)
Q Consensus       203 ~Q~~vl~~g~lp~Ll~LL~s~~~--~v~~kAl~ALS~LiR~~~~~~~~f~~-~gGi~--~L~~lL~s~~--------~d~  269 (397)
                      . ..+++ ...|.|.+++.+++.  .+|..++.||+-++.-.......... ..-+.  ....+.+++.        ++.
T Consensus       123 ~-~ei~~-~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~~le~if~~~~~~~~~~~~~~~~~~~~  200 (309)
T PF05004_consen  123 S-EEIFE-ELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELMESLESIFLLSILKSDGNAPVVAAEDDA  200 (309)
T ss_pred             H-HHHHH-HHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHhcCcCCCcccccCCCcc
Confidence            3 34444 478999999987653  45677777777553311111111110 01111  1111122111        123


Q ss_pred             HHHHHHHHHHHHHhhchhccCCCCcchhHHhCCcHHHHHHhccCCChHHHHHHHHHHHHHhcC
Q 015951          270 RLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQL  332 (397)
Q Consensus       270 klr~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~dv~E~aL~aL~~L~~~  332 (397)
                      .+...|+..-+-|++.    .++....... ...++.++.+|.++|.+||-.|-.+|.-|...
T Consensus       201 ~l~~aAL~aW~lLlt~----~~~~~~~~~~-~~~~~~l~~lL~s~d~~VRiAAGEaiAll~E~  258 (309)
T PF05004_consen  201 ALVAAALSAWALLLTT----LPDSKLEDLL-EEALPALSELLDSDDVDVRIAAGEAIALLYEL  258 (309)
T ss_pred             HHHHHHHHHHHHHHhc----CCHHHHHHHH-HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence            4666666666655542    2221112222 34588999999999999999999988877654

The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].

>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]

Probab=96.47  E-value=0.051  Score=56.33  Aligned_cols=155  Identities=13%  Similarity=0.124  Sum_probs=117.2

Q ss_pred             HHHHHHHhhCCCCCHHHHHHHHHHHHhccCCCCchhHHHhcCCHHHHHHhcC-CCCHHHHHHHHHHHHHHhcCChHHHHH
Q 015951          128 IQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLN-HPDTDIRKISAWILGKASQNNPLVQKQ  206 (397)
Q Consensus       128 mk~~i~~L~~~~~s~e~k~~AL~~L~~Lve~iDnA~~~~~lGGl~~Li~lL~-s~~~~ir~~Aa~vLg~~aqNNp~~Q~~  206 (397)
                      .-.++..+..+......++.+-..|+++.- -.|...+...| +..++.+-+ ...+++....+.+|+++.++..+.-+.
T Consensus       182 lD~Llrmf~aPn~et~vRve~~rlLEq~~~-aeN~d~va~~~-~~~Il~lAK~~e~~e~aR~~~~il~~mFKHSeet~~~  259 (832)
T KOG3678|consen  182 LDLLLRMFQAPNLETSVRVEAARLLEQILV-AENRDRVARIG-LGVILNLAKEREPVELARSVAGILEHMFKHSEETCQR  259 (832)
T ss_pred             HHHHHHHHhCCchhHHHHHHHHHHHHHHHh-hhhhhHHhhcc-chhhhhhhhhcCcHHHHHHHHHHHHHHhhhhHHHHHH
Confidence            345677777776555668888877777553 34555566665 666666553 467899999999999999988777778


Q ss_pred             HHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcC-ChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhc
Q 015951          207 VLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRN-NLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKC  285 (397)
Q Consensus       207 vl~~g~lp~Ll~LL~s~~~~v~~kAl~ALS~LiR~-~~~~~~~f~~~gGi~~L~~lL~s~~~d~klr~kA~~lL~~L~~~  285 (397)
                      +++.|++..++-.....++.+-..+..||+|+.-| ....+..+++-..-+-|..+-.+.  |.-+|..|+-++.-|+++
T Consensus       260 Lvaa~~lD~vl~~~rRt~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF~LA~sk--Del~R~~AClAV~vlat~  337 (832)
T KOG3678|consen  260 LVAAGGLDAVLYWCRRTDPALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLFPLAFSK--DELLRLHACLAVAVLATN  337 (832)
T ss_pred             HHhhcccchheeecccCCHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhhhhhcch--HHHHHHHHHHHHhhhhhh
Confidence            88999999999988888888888888899987655 456677777777777776665554  455899999999999875


Q ss_pred             h
Q 015951          286 Q  286 (397)
Q Consensus       286 ~  286 (397)
                      +
T Consensus       338 K  338 (832)
T KOG3678|consen  338 K  338 (832)
T ss_pred             h
Confidence            3

>COG5369 Uncharacterized conserved protein [Function unknown]

Probab=96.38  E-value=0.022  Score=59.80  Aligned_cols=167  Identities=11%  Similarity=0.133  Sum_probs=123.6

Q ss_pred             CCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhc-HH
Q 015951          169 GGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAG-QE  247 (397)
Q Consensus       169 GGl~~Li~lL~s~~~~ir~~Aa~vLg~~aqNNp~~Q~~vl~~g~lp~Ll~LL~s~~~~v~~kAl~ALS~LiR~~~~~-~~  247 (397)
                      .-.++|++.|..|+..|...+...+.+.+---...|..|++.|.|..|++++.+.++.++++..|.+.-+..+.... +-
T Consensus       431 ~I~elLi~~Ls~Peimi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~sKDdaLqans~wvlrHlmyncq~~ekf  510 (743)
T COG5369         431 PIVELLIDALSNPEIMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVMSKDDALQANSEWVLRHLMYNCQKNEKF  510 (743)
T ss_pred             chHHHHHHHhcCccceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhhcchhhhhhcchhhhhhhhhcCcchhhh
Confidence            45678889998888888888888888888766779999999999999999999988899999999999999887554 45


Q ss_pred             HHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHHhCC----cHHHHHHhccCC-ChHHHHHH
Q 015951          248 MFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRF----FLKSVVDLTASA-DLDLQEKA  322 (397)
Q Consensus       248 ~f~~~gGi~~L~~lL~s~~~d~klr~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g----~v~~Lv~lL~~~-d~dv~E~a  322 (397)
                      .|+...|...++.+..++  ..++|.....++.|+.-..  .-++..++.+.+..    +.+.+++-+... ..++++..
T Consensus       511 ~~Lakig~~kvl~~~NDp--c~~vq~q~lQilrNftc~~--~knEkskdv~~K~~p~~ylfk~l~~k~e~~np~~i~~~~  586 (743)
T COG5369         511 KFLAKIGVEKVLSYTNDP--CFKVQHQVLQILRNFTCDT--SKNEKSKDVFIKATPRRYLFKRLIDKYEENNPMEILEGC  586 (743)
T ss_pred             hhHHhcCHHHHHHHhcCc--ccccHHHHHHHHHhccccc--ccccccceeEEecChHHHHHHHHHHHHHhcCchhhhhhH
Confidence            788899999999999987  6789999999999986410  01233444443322    334455555554 44666665


Q ss_pred             HHHHHHHhcCChHHHHHH
Q 015951          323 LAAIKNLLQLRTTEALVL  340 (397)
Q Consensus       323 L~aL~~L~~~~~~~r~~~  340 (397)
                      -..+...+++.+ .+..+
T Consensus       587 yilv~~aa~d~~-l~~~V  603 (743)
T COG5369         587 YILVRNAACDDT-LDYIV  603 (743)
T ss_pred             HHHHHHHhccch-HHHHH
Confidence            555555555543 44443

>TIGR02270 conserved hypothetical protein

Probab=96.31  E-value=0.48  Score=49.07  Aligned_cols=89  Identities=20%  Similarity=0.043  Sum_probs=63.9

Q ss_pred             HHHHHHHHHhhCCCCCHHHHHHHHHHHHhccCCCCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHHHH
Q 015951          126 QLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQK  205 (397)
Q Consensus       126 ~lmk~~i~~L~~~~~s~e~k~~AL~~L~~Lve~iDnA~~~~~lGGl~~Li~lL~s~~~~ir~~Aa~vLg~~aqNNp~~Q~  205 (397)
                      +....++..|.+.  ++..+..++..+..           ....-.++++.+|+++++.+|..|+.+||.+-.-      
T Consensus       117 ~a~~~L~~~L~~~--~p~vR~aal~al~~-----------r~~~~~~~L~~~L~d~d~~Vra~A~raLG~l~~~------  177 (410)
T TIGR02270       117 QAEPWLEPLLAAS--EPPGRAIGLAALGA-----------HRHDPGPALEAALTHEDALVRAAALRALGELPRR------  177 (410)
T ss_pred             HHHHHHHHHhcCC--ChHHHHHHHHHHHh-----------hccChHHHHHHHhcCCCHHHHHHHHHHHHhhccc------
Confidence            3444455555433  34445555544443           1122467888999999999999999999988642      


Q ss_pred             HHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHH
Q 015951          206 QVLELGALSKLMKMVKSSFVEEAVKALYTVSSL  238 (397)
Q Consensus       206 ~vl~~g~lp~Ll~LL~s~~~~v~~kAl~ALS~L  238 (397)
                           .++|.|...+.+.++.||..|+++++-+
T Consensus       178 -----~a~~~L~~al~d~~~~VR~aA~~al~~l  205 (410)
T TIGR02270       178 -----LSESTLRLYLRDSDPEVRFAALEAGLLA  205 (410)
T ss_pred             -----cchHHHHHHHcCCCHHHHHHHHHHHHHc
Confidence                 5788899999999999999999999765

Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.

>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B

Probab=96.30  E-value=0.007  Score=43.97  Aligned_cols=54  Identities=15%  Similarity=0.106  Sum_probs=44.6

Q ss_pred             HHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHH
Q 015951          226 EEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDL  282 (397)
Q Consensus       226 ~v~~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klr~kA~~lL~~L  282 (397)
                      .+|..|+++|+++..+.+..... +....++.|..+|.++  +..+|..|+++|++|
T Consensus         2 ~vR~~A~~aLg~l~~~~~~~~~~-~~~~~~~~L~~~L~d~--~~~VR~~A~~aLg~l   55 (55)
T PF13513_consen    2 RVRRAAAWALGRLAEGCPELLQP-YLPELLPALIPLLQDD--DDSVRAAAAWALGNL   55 (55)
T ss_dssp             HHHHHHHHHHHCTTTTTHHHHHH-HHHHHHHHHHHHTTSS--SHHHHHHHHHHHHCH
T ss_pred             HHHHHHHHHHhhHhcccHHHHHH-HHHHHHHHHHHHHcCC--CHHHHHHHHHHHhcC
Confidence            58999999999988877766555 4478899999999876  347999999999865

...

>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term

Probab=96.25  E-value=0.35  Score=49.40  Aligned_cols=178  Identities=16%  Similarity=0.074  Sum_probs=132.1

Q ss_pred             HHHHHHHHHHHHhccCCCCchhHHHhcCCHHHHHHhcCC--CCHHHHHHHHHHHHHHhcCChHHHHHHHHcCcHHHHHHh
Q 015951          142 LEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNH--PDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKM  219 (397)
Q Consensus       142 ~e~k~~AL~~L~~Lve~iDnA~~~~~lGGl~~Li~lL~s--~~~~ir~~Aa~vLg~~aqNNp~~Q~~vl~~g~lp~Ll~L  219 (397)
                      .+.+..++..+.+++.+.+.-..+.+++.--.++..|..  .+..=|.+|...+..+..-....+  .+-.|.+..++.+
T Consensus        39 ~~vraa~yRilRy~i~d~~~l~~~~~l~id~~ii~SL~~~~~~~~ER~QALkliR~~l~~~~~~~--~~~~~vvralvai  116 (371)
T PF14664_consen   39 KEVRAAGYRILRYLISDEESLQILLKLHIDIFIIRSLDRDNKNDVEREQALKLIRAFLEIKKGPK--EIPRGVVRALVAI  116 (371)
T ss_pred             HHHHHHHHHHHHHHHcCHHHHHHHHHcCCchhhHhhhcccCCChHHHHHHHHHHHHHHHhcCCcc--cCCHHHHHHHHHH
Confidence            578888999999999999999999999866666677743  455668999999998876421111  1345788999999


Q ss_pred             hcCCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHH
Q 015951          220 VKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFR  299 (397)
Q Consensus       220 L~s~~~~v~~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klr~kA~~lL~~L~~~~l~~~~~~~~~~l~  299 (397)
                      ..+.++..+.-++-.|+-++-.+|.   .+..+||+..|.+.+.++.  ..+..-.+..+-++..      +|..+..+.
T Consensus       117 ae~~~D~lr~~cletL~El~l~~P~---lv~~~gG~~~L~~~l~d~~--~~~~~~l~~~lL~lLd------~p~tR~yl~  185 (371)
T PF14664_consen  117 AEHEDDRLRRICLETLCELALLNPE---LVAECGGIRVLLRALIDGS--FSISESLLDTLLYLLD------SPRTRKYLR  185 (371)
T ss_pred             HhCCchHHHHHHHHHHHHHHhhCHH---HHHHcCCHHHHHHHHHhcc--HhHHHHHHHHHHHHhC------Ccchhhhhc
Confidence            9998889999999999999888874   7788999999999998752  3366677777778874      577777776


Q ss_pred             hCCcHHHHHHhccCC-------Ch--HHHHHHHHHHHHHhcC
Q 015951          300 DRFFLKSVVDLTASA-------DL--DLQEKALAAIKNLLQL  332 (397)
Q Consensus       300 ~~g~v~~Lv~lL~~~-------d~--dv~E~aL~aL~~L~~~  332 (397)
                      ..--++.+.......       +.  +....+..++..+...
T Consensus       186 ~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~Lrs  227 (371)
T PF14664_consen  186 PGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRS  227 (371)
T ss_pred             CCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhc
Confidence            655556655544322       22  3556666666666643

>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=96.15  E-value=0.28  Score=53.58  Aligned_cols=179  Identities=15%  Similarity=0.104  Sum_probs=116.9

Q ss_pred             HhcCCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHH-HHHhcCc
Q 015951          176 GQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQE-MFYVEAG  254 (397)
Q Consensus       176 ~lL~s~~~~ir~~Aa~vLg~~aqNNp~~Q~~vl~~g~lp~Ll~LL~s~~~~v~~kAl~ALS~LiR~~~~~~~-~f~~~gG  254 (397)
                      +-+++++=.-|..|+-+.|.+-..-...+..-+..+++|.++.++.+++--++..+.|+++.++.+.|.... ...-.+-
T Consensus       371 e~i~~pdwr~reaavmAFGSIl~gp~~~~Lt~iV~qalp~ii~lm~D~sl~VkdTaAwtlgrI~d~l~e~~~n~~~l~~~  450 (859)
T KOG1241|consen  371 ENIQNPDWRNREAAVMAFGSILEGPEPDKLTPIVIQALPSIINLMSDPSLWVKDTAAWTLGRIADFLPEAIINQELLQSK  450 (859)
T ss_pred             HhcCCcchhhhhHHHHHHHhhhcCCchhhhhHHHhhhhHHHHHHhcCchhhhcchHHHHHHHHHhhchhhcccHhhhhHH
Confidence            356678888899999999999877666777777789999999999976667788999999999988765432 2233456


Q ss_pred             HHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHHhC---CcHHHHHHhccC---CChHHHHHHHHHHHH
Q 015951          255 DLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDR---FFLKSVVDLTAS---ADLDLQEKALAAIKN  328 (397)
Q Consensus       255 i~~L~~lL~s~~~d~klr~kA~~lL~~L~~~~l~~~~~~~~~~l~~~---g~v~~Lv~lL~~---~d~dv~E~aL~aL~~  328 (397)
                      ++.|+.-|.+   .+++-.+++|++.+|+..-.+.....-.....+.   -++..|+..-..   .+..+|-.|-.||..
T Consensus       451 l~~l~~gL~D---ePrva~N~CWAf~~Laea~~eA~~s~~qt~~~t~~y~~ii~~Ll~~tdr~dgnqsNLR~AAYeALmE  527 (859)
T KOG1241|consen  451 LSALLEGLND---EPRVASNVCWAFISLAEAAYEAAVSNGQTDPATPFYEAIIGSLLKVTDRADGNQSNLRSAAYEALME  527 (859)
T ss_pred             HHHHHHHhhh---CchHHHHHHHHHHHHHHHHHHhccCCCCCCccchhHHHHHHHHHhhccccccchhhHHHHHHHHHHH
Confidence            6677777765   5689999999999998632111111100001111   233334333322   256899999999999


Q ss_pred             HhcCChHHHHHHHhcCChHHHHHHHHHHhH
Q 015951          329 LLQLRTTEALVLKDFCGLDTALERLRQQLQ  358 (397)
Q Consensus       329 L~~~~~~~r~~~~~~~gL~~~L~~Lr~~~~  358 (397)
                      +...++..---+. .+-..-.+.+|.+-+.
T Consensus       528 lIk~st~~vy~~v-~~~~l~il~kl~q~i~  556 (859)
T KOG1241|consen  528 LIKNSTDDVYPMV-QKLTLVILEKLDQTIS  556 (859)
T ss_pred             HHHcCcHHHHHHH-HHHHHHHHHHHHHHHH
Confidence            9988765222121 1112344555555544

>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]

Probab=96.13  E-value=0.36  Score=54.53  Aligned_cols=93  Identities=20%  Similarity=0.191  Sum_probs=75.2

Q ss_pred             HHHHHHHHHHHHhccCCCCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCcHHHHHHhhc
Q 015951          142 LEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVK  221 (397)
Q Consensus       142 ~e~k~~AL~~L~~Lve~iDnA~~~~~lGGl~~Li~lL~s~~~~ir~~Aa~vLg~~aqNNp~~Q~~vl~~g~lp~Ll~LL~  221 (397)
                      +.-..-||+.+..+..+-++-+++...|.+..|+.+|.| -|..|..+..+|-.++. |++.-...+++|++..++.++.
T Consensus      1786 ~~iq~LaL~Vi~~~Tan~~Cv~~~a~~~vL~~LL~lLHS-~PS~R~~vL~vLYAL~S-~~~i~keA~~hg~l~yil~~~c 1863 (2235)
T KOG1789|consen 1786 PKLQILALQVILLATANKECVTDLATCNVLTTLLTLLHS-QPSMRARVLDVLYALSS-NGQIGKEALEHGGLMYILSILC 1863 (2235)
T ss_pred             chHHHHHHHHHHHHhcccHHHHHHHhhhHHHHHHHHHhc-ChHHHHHHHHHHHHHhc-CcHHHHHHHhcCchhhhhHHHh
Confidence            345567899999988999999999999988888888755 68999999999999986 6888888899999999998887


Q ss_pred             CCC-HHHHHHHHHHHH
Q 015951          222 SSF-VEEAVKALYTVS  236 (397)
Q Consensus       222 s~~-~~v~~kAl~ALS  236 (397)
                      .++ ...|..|..-++
T Consensus      1864 ~~~~~QqRAqaAeLla 1879 (2235)
T KOG1789|consen 1864 LTNSDQQRAQAAELLA 1879 (2235)
T ss_pred             ccCcHHHHHHHHHHHH
Confidence            654 455555444443

>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]

Probab=96.13  E-value=0.02  Score=60.95  Aligned_cols=146  Identities=18%  Similarity=0.178  Sum_probs=94.0

Q ss_pred             HHHHHhcCCCCHHHHHHHHHHHHHHhcCChHHHH--HHHHcCcHHHHHHhhcCCCHHHHH---HHHHHHHHHhcCChhcH
Q 015951          172 SVLVGQLNHPDTDIRKISAWILGKASQNNPLVQK--QVLELGALSKLMKMVKSSFVEEAV---KALYTVSSLIRNNLAGQ  246 (397)
Q Consensus       172 ~~Li~lL~s~~~~ir~~Aa~vLg~~aqNNp~~Q~--~vl~~g~lp~Ll~LL~s~~~~v~~---kAl~ALS~LiR~~~~~~  246 (397)
                      ..++.+|++..|.+|.+|+...|.++.-=..|-+  .+.+.|  -.|...|..+.+++--   +|+++|-+..+-. .-|
T Consensus       607 StiL~~L~~k~p~vR~~aadl~~sl~~vlk~c~e~~~l~klg--~iLyE~lge~ypEvLgsil~Ai~~I~sv~~~~-~mq  683 (975)
T COG5181         607 STILKLLRSKPPDVRIRAADLMGSLAKVLKACGETKELAKLG--NILYENLGEDYPEVLGSILKAICSIYSVHRFR-SMQ  683 (975)
T ss_pred             HHHHHHhcCCCccHHHHHHHHHHHHHHHHHhcchHHHHHHHh--HHHHHhcCcccHHHHHHHHHHHHHHhhhhccc-ccC
Confidence            3445678999999999999999998742111111  111112  2344566666677644   5555555544322 111


Q ss_pred             HHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCC---cchhHHhCCcHHHHHHhccCCChHHHHHHH
Q 015951          247 EMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKV---EPPLFRDRFFLKSVVDLTASADLDLQEKAL  323 (397)
Q Consensus       247 ~~f~~~gGi~~L~~lL~s~~~d~klr~kA~~lL~~L~~~~l~~~~~~---~~~~l~~~g~v~~Lv~lL~~~d~dv~E~aL  323 (397)
                      ..  -.|-++.|..+|++.  ..|+..+...++.-++..     .|+   .+++.   .+|=-|+++|++-+..++..|.
T Consensus       684 pP--i~~ilP~ltPILrnk--h~Kv~~nti~lvg~I~~~-----~peyi~~rEWM---RIcfeLvd~Lks~nKeiRR~A~  751 (975)
T COG5181         684 PP--ISGILPSLTPILRNK--HQKVVANTIALVGTICMN-----SPEYIGVREWM---RICFELVDSLKSWNKEIRRNAT  751 (975)
T ss_pred             Cc--hhhccccccHhhhhh--hHHHhhhHHHHHHHHHhc-----CcccCCHHHHH---HHHHHHHHHHHHhhHHHHHhhh
Confidence            11  136688899999987  678999999999999873     232   23443   3555678888888888888888


Q ss_pred             HHHHHHhcC
Q 015951          324 AAIKNLLQL  332 (397)
Q Consensus       324 ~aL~~L~~~  332 (397)
                      .+++.++..
T Consensus       752 ~tfG~Is~a  760 (975)
T COG5181         752 ETFGCISRA  760 (975)
T ss_pred             hhhhhHHhh
Confidence            777766643

>PF11841 DUF3361: Domain of unknown function (DUF3361)

Probab=96.12  E-value=0.099  Score=47.06  Aligned_cols=126  Identities=13%  Similarity=0.184  Sum_probs=94.7

Q ss_pred             HHHHHHcCcHHHHHHhhcCCCH------HHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHH
Q 015951          204 QKQVLELGALSKLMKMVKSSFV------EEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVS  277 (397)
Q Consensus       204 Q~~vl~~g~lp~Ll~LL~s~~~------~v~~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klr~kA~~  277 (397)
                      -..|+..||++.|++++.++..      +.-..++.|+..+.-|.--.. ..+...=+..++.....+..+..+...|..
T Consensus         4 A~EFI~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg~vsW-d~l~~~FI~Kia~~Vn~~~~d~~i~q~sLa   82 (160)
T PF11841_consen    4 AQEFISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHGIVSW-DTLSDSFIKKIASYVNSSAMDASILQRSLA   82 (160)
T ss_pred             HHHHHhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcCcCch-hhccHHHHHHHHHHHccccccchHHHHHHH
Confidence            3568899999999999998763      455677888888776543222 233333445566666655446778999999


Q ss_pred             HHHHHhhchhccCCCCcchhHHhCCcHHHHHHhccCCChHHHHHHHHHHHHHhcCChH
Q 015951          278 LVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLRTT  335 (397)
Q Consensus       278 lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~dv~E~aL~aL~~L~~~~~~  335 (397)
                      .|-+++.     .++.....+.++--++.|+.+|...+.++|-+|+..+-+|....+.
T Consensus        83 ILEs~Vl-----~S~~ly~~V~~evt~~~Li~hLq~~~~~iq~naiaLinAL~~kA~~  135 (160)
T PF11841_consen   83 ILESIVL-----NSPKLYQLVEQEVTLESLIRHLQVSNQEIQTNAIALINALFLKADD  135 (160)
T ss_pred             HHHHHHh-----CCHHHHHHHhccCCHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCh
Confidence            9999986     3556677777888899999999999999999999988887766544

>COG1413 FOG: HEAT repeat [Energy production and conversion]

Probab=96.12  E-value=0.41  Score=47.38  Aligned_cols=156  Identities=17%  Similarity=0.170  Sum_probs=96.6

Q ss_pred             HHHHHHHHhhCCCCCHHHHHHHHHHHHhccCCCCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHHHHH
Q 015951          127 LIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQ  206 (397)
Q Consensus       127 lmk~~i~~L~~~~~s~e~k~~AL~~L~~Lve~iDnA~~~~~lGGl~~Li~lL~s~~~~ir~~Aa~vLg~~aqNNp~~Q~~  206 (397)
                      .....++.+.+.  +...|..|...+..    ++      ..-.++.+..+|.+.++.+|..|+.+||.+  ++|     
T Consensus        44 ~~~~~~~~l~~~--~~~vr~~aa~~l~~----~~------~~~av~~l~~~l~d~~~~vr~~a~~aLg~~--~~~-----  104 (335)
T COG1413          44 AADELLKLLEDE--DLLVRLSAAVALGE----LG------SEEAVPLLRELLSDEDPRVRDAAADALGEL--GDP-----  104 (335)
T ss_pred             hHHHHHHHHcCC--CHHHHHHHHHHHhh----hc------hHHHHHHHHHHhcCCCHHHHHHHHHHHHcc--CCh-----
Confidence            344555666655  44556666555321    11      122678888999999999999999988877  344     


Q ss_pred             HHHcCcHHHHHHhhcC-CCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCC----------ccHHHHHHH
Q 015951          207 VLELGALSKLMKMVKS-SFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSS----------FEIRLHRKA  275 (397)
Q Consensus       207 vl~~g~lp~Ll~LL~s-~~~~v~~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~----------~d~klr~kA  275 (397)
                          ..+|.|+.++.. .+..+|..|.++|+.+-  .+         .++..|...+.+..          ....+|..+
T Consensus       105 ----~a~~~li~~l~~d~~~~vR~~aa~aL~~~~--~~---------~a~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~a  169 (335)
T COG1413         105 ----EAVPPLVELLENDENEGVRAAAARALGKLG--DE---------RALDPLLEALQDEDSGSAAAALDAALLDVRAAA  169 (335)
T ss_pred             ----hHHHHHHHHHHcCCcHhHHHHHHHHHHhcC--ch---------hhhHHHHHHhccchhhhhhhhccchHHHHHHHH
Confidence                478999999994 66789999999999762  22         22556666666542          111244455


Q ss_pred             HHHHHHHhhchhccCCCCcchhHHhCCcHHHHHHhccCCChHHHHHHHHHHHHHhcC
Q 015951          276 VSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQL  332 (397)
Q Consensus       276 ~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~dv~E~aL~aL~~L~~~  332 (397)
                      +..+..+-.                ...++.+...+...+.+++..|..+|..+...
T Consensus       170 ~~~l~~~~~----------------~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~  210 (335)
T COG1413         170 AEALGELGD----------------PEAIPLLIELLEDEDADVRRAAASALGQLGSE  210 (335)
T ss_pred             HHHHHHcCC----------------hhhhHHHHHHHhCchHHHHHHHHHHHHHhhcc
Confidence            555554421                23344455555555556666666666655554

>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.09  E-value=0.13  Score=53.68  Aligned_cols=193  Identities=18%  Similarity=0.127  Sum_probs=139.9

Q ss_pred             HhHHHHHHHHHhcC----CCCHHHHHHHHHHHhhCCCCC----HHHH-HHHHHHHHhccCCCCchhHHHhcCCHHHHHHh
Q 015951          107 KRQMEIKELMEKLK----TPSDAQLIQIAIDDLNNSTLS----LEDS-QRALQELLILVEPIDNANDLSKLGGLSVLVGQ  177 (397)
Q Consensus       107 ~r~~~L~ea~~~~~----~~~d~~lmk~~i~~L~~~~~s----~e~k-~~AL~~L~~Lve~iDnA~~~~~lGGl~~Li~l  177 (397)
                      +|+++-.+.|+.-+    .+...+.+|+-++.+...-.+    .+.. ..|+--|.++.+++..--.+..-+-+..|+..
T Consensus       233 kRye~w~~El~k~krs~de~p~netLk~e~dr~~kklk~~~~KQeqLLrva~ylLlNlAed~~~ElKMrrkniV~mLVKa  312 (791)
T KOG1222|consen  233 KRYEFWIAELKKTKRSTDEKPKNETLKEEIDRLNKKLKTAIRKQEQLLRVAVYLLLNLAEDISVELKMRRKNIVAMLVKA  312 (791)
T ss_pred             HHHHHHHHHHhhhhcccccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhHHHHHHHH
Confidence            68888777776542    122355566655554332211    1222 24677788888998877778877888899999


Q ss_pred             cCCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHH
Q 015951          178 LNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLM  257 (397)
Q Consensus       178 L~s~~~~ir~~Aa~vLg~~aqNNp~~Q~~vl~~g~lp~Ll~LL~s~~~~v~~kAl~ALS~LiR~~~~~~~~f~~~gGi~~  257 (397)
                      |..++.++-......|-.++- -.+.+..+.+.|.+.+|++++....+.++...+.-+=|+.-+. ..+...+..|-+|.
T Consensus       313 Ldr~n~~Ll~lv~~FLkKLSI-f~eNK~~M~~~~iveKL~klfp~~h~dL~~~tl~LlfNlSFD~-glr~KMv~~GllP~  390 (791)
T KOG1222|consen  313 LDRSNSSLLTLVIKFLKKLSI-FDENKIVMEQNGIVEKLLKLFPIQHPDLRKATLMLLFNLSFDS-GLRPKMVNGGLLPH  390 (791)
T ss_pred             HcccchHHHHHHHHHHHHhhh-hccchHHHHhccHHHHHHHhcCCCCHHHHHHHHHHhhhccccc-cccHHHhhccchHH
Confidence            998888988888888887764 3446777888999999999999999888877777777775543 44667788888999


Q ss_pred             HHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHHhCCcHHHHHHhc
Q 015951          258 LQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLT  311 (397)
Q Consensus       258 L~~lL~s~~~d~klr~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL  311 (397)
                      |..++.+++.    ..-|+..++.++-      ++..+..|.....++.+...+
T Consensus       391 l~~ll~~d~~----~~iA~~~lYh~S~------dD~~K~MfayTdci~~lmk~v  434 (791)
T KOG1222|consen  391 LASLLDSDTK----HGIALNMLYHLSC------DDDAKAMFAYTDCIKLLMKDV  434 (791)
T ss_pred             HHHHhCCccc----chhhhhhhhhhcc------CcHHHHHHHHHHHHHHHHHHH
Confidence            9999997632    3347777777763      677788888888888887754

>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []

Probab=96.03  E-value=0.17  Score=49.04  Aligned_cols=196  Identities=14%  Similarity=0.096  Sum_probs=124.9

Q ss_pred             CHHHHHHHHHHHHhccCCCC-chhHH-HhcCCHHHHHHh-------cCCCC--H---HHHHHHHHHHHHHhcCChHHHHH
Q 015951          141 SLEDSQRALQELLILVEPID-NANDL-SKLGGLSVLVGQ-------LNHPD--T---DIRKISAWILGKASQNNPLVQKQ  206 (397)
Q Consensus       141 s~e~k~~AL~~L~~Lve~iD-nA~~~-~~lGGl~~Li~l-------L~s~~--~---~ir~~Aa~vLg~~aqNNp~~Q~~  206 (397)
                      +++.|+.||.+|..--+..+ .|--+ +..|-+..|++-       |..++  +   .--+.|..++..+|+ +|+.+..
T Consensus         8 ~~~~Re~Al~eLsk~r~~~~~La~~LW~s~G~i~~LLqEIisiYp~l~~~~Lt~~~snRVcnaLaLlQ~vAs-hpetr~~   86 (262)
T PF04078_consen    8 NPETRENALLELSKKRESFPDLAPLLWHSFGTIAALLQEIISIYPALSPPNLTARQSNRVCNALALLQCVAS-HPETRMP   86 (262)
T ss_dssp             SHHHHHHHHHHHHHTCCC-TTHHHHHHTSTTHHHHHHHHHHGGGGGTTTT---HHHHHHHHHHHHHHHHHHH--TTTHHH
T ss_pred             CcchHHHHHHHHHHhhhcccchhHHHHcCCChHHHHHHHHHHHcccCCCcccCHHHHHHHHHHHHHHHHHHc-ChHHHHH
Confidence            45889999999998777754 34333 334666666542       23222  2   333456666667776 7999999


Q ss_pred             HHHcCcHHHHHHhhcCCC-----HHHHHHHHHHHHHHhcCC-hhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHH
Q 015951          207 VLELGALSKLMKMVKSSF-----VEEAVKALYTVSSLIRNN-LAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVG  280 (397)
Q Consensus       207 vl~~g~lp~Ll~LL~s~~-----~~v~~kAl~ALS~LiR~~-~~~~~~f~~~gGi~~L~~lL~s~~~d~klr~kA~~lL~  280 (397)
                      |++.+..-.|.-.|+..+     +-+|-.+++-|+++++.+ +....-+.+..-++...+.+..+  +.-.|.-|+|.+.
T Consensus        87 Fl~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcLr~me~G--selSKtvAtfIlq  164 (262)
T PF04078_consen   87 FLKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCLRIMEFG--SELSKTVATFILQ  164 (262)
T ss_dssp             HHHTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHHHHHHHS---HHHHHHHHHHHH
T ss_pred             HHHcCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHHHHHHhc--cHHHHHHHHHHHH
Confidence            999987666666666543     246889999999999975 44455556678899999999876  4457889999999


Q ss_pred             HHhhch--hccCCCCcchhHHh-CCcHHHHH-HhccCCChHHHHHHHHHHHHHhcCChHHHHHHH
Q 015951          281 DLAKCQ--LENMHKVEPPLFRD-RFFLKSVV-DLTASADLDLQEKALAAIKNLLQLRTTEALVLK  341 (397)
Q Consensus       281 ~L~~~~--l~~~~~~~~~~l~~-~g~v~~Lv-~lL~~~d~dv~E~aL~aL~~L~~~~~~~r~~~~  341 (397)
                      .+....  +. .--...+.|.. ..++..++ .+.+.+++.+..++.+|-..|+.++. .|..++
T Consensus       165 KIL~dd~GL~-yiC~t~eRf~av~~vL~~mV~~l~~~pS~RLLKhIIrCYlRLsdnpr-ar~aL~  227 (262)
T PF04078_consen  165 KILLDDVGLN-YICQTAERFFAVAMVLNKMVEQLVKQPSPRLLKHIIRCYLRLSDNPR-AREALR  227 (262)
T ss_dssp             HHHHSHHHHH-HHTSSHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHTTSTT-HHHHHH
T ss_pred             HHHcchhHHH-HHhcCHHHHHHHHHHHHHHHHHHccCCChhHHHHHHHHHHHHccCHH-HHHHHH
Confidence            988632  00 00112222211 12233333 34566789999999999999998864 555554

Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.

>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]

Probab=95.95  E-value=0.54  Score=52.59  Aligned_cols=153  Identities=14%  Similarity=0.076  Sum_probs=87.5

Q ss_pred             HHHHHHHHHHHHhcCChHHHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcC
Q 015951          185 IRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGN  264 (397)
Q Consensus       185 ir~~Aa~vLg~~aqNNp~~Q~~vl~~g~lp~Ll~LL~s~~~~v~~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s  264 (397)
                      ++.-++.+++-..++--..--. ++.+.+..++--+.+.-..+|+||+++||.+.-..+.  ..|  .+-+..|.+-|..
T Consensus       149 i~~e~lDil~d~lsr~g~ll~~-fh~~il~~l~~ql~s~R~aVrKkai~~l~~la~~~~~--~ly--~~li~~Ll~~L~~  223 (1233)
T KOG1824|consen  149 IKCEVLDILADVLSRFGTLLPN-FHLSILKCLLPQLQSPRLAVRKKAITALGHLASSCNR--DLY--VELIEHLLKGLSN  223 (1233)
T ss_pred             hHHHHHHHHHHHHHhhcccCcc-hHHHHHHHHhhcccChHHHHHHHHHHHHHHHHHhcCH--HHH--HHHHHHHHhccCC
Confidence            5666666666555542211111 2223444455455555567899999999998764332  222  2445566666664


Q ss_pred             CCccHHHHHHHHHHHHHHhhchhccCCCCcchhHHhCCcHHHHHHhc---cCCChHHHHHHHHHHHHHhcCChHHHHHHH
Q 015951          265 SSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLT---ASADLDLQEKALAAIKNLLQLRTTEALVLK  341 (397)
Q Consensus       265 ~~~d~klr~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL---~~~d~dv~E~aL~aL~~L~~~~~~~r~~~~  341 (397)
                      + +....-+--..+|+.++.+.    .......  -..+++.+.+..   ..+|.+++|.++.++..+...   |++.+.
T Consensus       224 ~-~q~~~~rt~Iq~l~~i~r~a----g~r~~~h--~~~ivp~v~~y~~~~e~~dDELrE~~lQale~fl~r---cp~ei~  293 (1233)
T KOG1824|consen  224 R-TQMSATRTYIQCLAAICRQA----GHRFGSH--LDKIVPLVADYCNKIEEDDDELREYCLQALESFLRR---CPKEIL  293 (1233)
T ss_pred             C-CchHHHHHHHHHHHHHHHHh----cchhhcc--cchhhHHHHHHhcccccCcHHHHHHHHHHHHHHHHh---Chhhhc
Confidence            4 22223344566777777642    2222211  135677777776   667889999999999999964   556553


Q ss_pred             hcCChHHHHHHHH
Q 015951          342 DFCGLDTALERLR  354 (397)
Q Consensus       342 ~~~gL~~~L~~Lr  354 (397)
                        .-.+..+..+-
T Consensus       294 --p~~pei~~l~l  304 (1233)
T KOG1824|consen  294 --PHVPEIINLCL  304 (1233)
T ss_pred             --ccchHHHHHHH
Confidence              22344444443

>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []

Probab=95.93  E-value=0.012  Score=38.07  Aligned_cols=29  Identities=31%  Similarity=0.573  Sum_probs=25.9

Q ss_pred             HHHHHHhcCCCCHHHHHHHHHHHHHHhcC
Q 015951          171 LSVLVGQLNHPDTDIRKISAWILGKASQN  199 (397)
Q Consensus       171 l~~Li~lL~s~~~~ir~~Aa~vLg~~aqN  199 (397)
                      +|.+++++++++++||..|+++||.+++.
T Consensus         2 lp~l~~~l~D~~~~VR~~a~~~l~~i~~~   30 (31)
T PF02985_consen    2 LPILLQLLNDPSPEVRQAAAECLGAIAEH   30 (31)
T ss_dssp             HHHHHHHHT-SSHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence            68889999999999999999999999874

Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....

>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]

Probab=95.90  E-value=0.13  Score=47.97  Aligned_cols=132  Identities=14%  Similarity=0.029  Sum_probs=84.7

Q ss_pred             HHHHHHHHhccCCCCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCcHHHHHHhhcCCCH
Q 015951          146 QRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFV  225 (397)
Q Consensus       146 ~~AL~~L~~Lve~iDnA~~~~~lGGl~~Li~lL~s~~~~ir~~Aa~vLg~~aqNNp~~Q~~vl~~g~lp~Ll~LL~s~~~  225 (397)
                      ..|+..+..++....+.-+-.--..+|+|+..+.++..-|+..|..+|.+++++.+.....     .++.+.....+.++
T Consensus        71 ~~A~~~l~~l~~~l~~~~~~~~~~~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~~~~~-----~~~~l~~~~~~Kn~  145 (228)
T PF12348_consen   71 KTACQLLSDLARQLGSHFEPYADILLPPLLKKLGDSKKFIREAANNALDAIIESCSYSPKI-----LLEILSQGLKSKNP  145 (228)
T ss_dssp             HHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHGGG---HHHHHHHHHHHHHHHTTS-H--HH-----HHHHHHHHTT-S-H
T ss_pred             HHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHCCcHHHH-----HHHHHHHHHhCCCH
Confidence            4567777777765544422222246788999999999999999999999999987622221     15666777888889


Q ss_pred             HHHHHHHHHHHHHhcCChhcHHHHHh----cCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhh
Q 015951          226 EEAVKALYTVSSLIRNNLAGQEMFYV----EAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAK  284 (397)
Q Consensus       226 ~v~~kAl~ALS~LiR~~~~~~~~f~~----~gGi~~L~~lL~s~~~d~klr~kA~~lL~~L~~  284 (397)
                      .+|..++..+..++..++.....+-.    ..-.+.+..++.++  +..+|..|-.++..+..
T Consensus       146 ~vR~~~~~~l~~~l~~~~~~~~~l~~~~~~~~l~~~l~~~l~D~--~~~VR~~Ar~~~~~l~~  206 (228)
T PF12348_consen  146 QVREECAEWLAIILEKWGSDSSVLQKSAFLKQLVKALVKLLSDA--DPEVREAARECLWALYS  206 (228)
T ss_dssp             HHHHHHHHHHHHHHTT-----GGG--HHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHccchHhhhcccchHHHHHHHHHHHCCCC--CHHHHHHHHHHHHHHHH
Confidence            99999999999998887722222222    23456777777776  56788888888888765

The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.

>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=95.82  E-value=0.14  Score=55.16  Aligned_cols=151  Identities=13%  Similarity=0.051  Sum_probs=108.3

Q ss_pred             HHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhccCCCCchhHHHh------c-CCHHHHHHhcCCCCHHHHHHHHHHHHHH
Q 015951          124 DAQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSK------L-GGLSVLVGQLNHPDTDIRKISAWILGKA  196 (397)
Q Consensus       124 d~~lmk~~i~~L~~~~~s~e~k~~AL~~L~~Lve~iDnA~~~~~------l-GGl~~Li~lL~s~~~~ir~~Aa~vLg~~  196 (397)
                      =++++.++.+.|.+++..  ..+.|+..|..++|+.  |.-+..      + =-+|.++++.+|++|.||..|..|+-..
T Consensus       126 wpelLp~L~~~L~s~d~n--~~EgA~~AL~KIcEDs--a~~lds~~~~rpl~~mipkfl~f~~h~spkiRs~A~~cvNq~  201 (885)
T KOG2023|consen  126 WPELLPQLCELLDSPDYN--TCEGAFGALQKICEDS--AQFLDSDVLTRPLNIMIPKFLQFFKHPSPKIRSHAVGCVNQF  201 (885)
T ss_pred             chhHHHHHHHHhcCCccc--ccchhHHHHHHHHhhh--HHHHhhhcccCchHHhHHHHHHHHhCCChhHHHHHHhhhhhe
Confidence            356778888888877533  3567777887777754  222222      1 2478888999999999999999999888


Q ss_pred             hcCChHHHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHHHh--cCcHHHHHHhhcCCCccHHHHHH
Q 015951          197 SQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYV--EAGDLMLQDILGNSSFEIRLHRK  274 (397)
Q Consensus       197 aqNNp~~Q~~vl~~g~lp~Ll~LL~s~~~~v~~kAl~ALS~LiR~~~~~~~~f~~--~gGi~~L~~lL~s~~~d~klr~k  274 (397)
                      .-.++..-..-++ ..+..|..+..+.+++||+..+.|+.-++.-.|.   .+.-  .|-++.+.+..++.  +..+...
T Consensus       202 i~~~~qal~~~iD-~Fle~lFalanD~~~eVRk~vC~alv~Llevr~d---kl~phl~~IveyML~~tqd~--dE~VALE  275 (885)
T KOG2023|consen  202 IIIQTQALYVHID-KFLEILFALANDEDPEVRKNVCRALVFLLEVRPD---KLVPHLDNIVEYMLQRTQDV--DENVALE  275 (885)
T ss_pred             eecCcHHHHHHHH-HHHHHHHHHccCCCHHHHHHHHHHHHHHHHhcHH---hcccchHHHHHHHHHHccCc--chhHHHH
Confidence            7665533222222 3678888888888899999999999998865554   2221  35566667666665  5568889


Q ss_pred             HHHHHHHHhh
Q 015951          275 AVSLVGDLAK  284 (397)
Q Consensus       275 A~~lL~~L~~  284 (397)
                      |+-+...++.
T Consensus       276 ACEFwla~ae  285 (885)
T KOG2023|consen  276 ACEFWLALAE  285 (885)
T ss_pred             HHHHHHHHhc
Confidence            9999999986

>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []

Probab=95.81  E-value=0.067  Score=55.86  Aligned_cols=134  Identities=20%  Similarity=0.246  Sum_probs=95.1

Q ss_pred             HHHHHHhccCCCCchhHHHhcCCHHHHHHhc----------CCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCcHHHHH
Q 015951          148 ALQELLILVEPIDNANDLSKLGGLSVLVGQL----------NHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLM  217 (397)
Q Consensus       148 AL~~L~~Lve~iDnA~~~~~lGGl~~Li~lL----------~s~~~~ir~~Aa~vLg~~aqNNp~~Q~~vl~~g~lp~Ll  217 (397)
                      +|+.|..+-.+..++..+..-.|+..|+.+-          ..+++++...|..||+|+.-++|..|+.+.+.|+.+.++
T Consensus         1 ~L~~LRiLsRd~~~~~~l~~~~~l~~L~~~a~l~~~~~~~~~~~~~~v~~EALKCL~N~lf~s~~aR~~~~~~~~~~~l~   80 (446)
T PF10165_consen    1 CLETLRILSRDPTGLDPLFTEEGLSTLLKHAGLSESDEDEFESPDPDVSREALKCLCNALFLSPSARQIFVDLGLAEKLC   80 (446)
T ss_pred             CHHHHHHHccCcccchhhccHHHHHHHHHhcCCcccccccccCCChHHHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHH
Confidence            3566666777777777777777777777654          447899999999999999999999999999999999999


Q ss_pred             HhhcCC-----CHHH---HHHHHHHHHHHhcCChhcHHHH-HhcCcHHHHHHhhcC--------CC-------ccHHHHH
Q 015951          218 KMVKSS-----FVEE---AVKALYTVSSLIRNNLAGQEMF-YVEAGDLMLQDILGN--------SS-------FEIRLHR  273 (397)
Q Consensus       218 ~LL~s~-----~~~v---~~kAl~ALS~LiR~~~~~~~~f-~~~gGi~~L~~lL~s--------~~-------~d~klr~  273 (397)
                      ..|+..     +.++   -.+-++-+.++.   +..+..+ -+++|+..|...|..        ..       .+...-.
T Consensus        81 ~~Lk~~~~~~~~~d~~Fl~~RLLFLlTa~~---~~~~~~L~~e~~~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~  157 (446)
T PF10165_consen   81 ERLKNYSDSSQPSDVEFLDSRLLFLLTALR---PDDRKKLIEEHHGVELLTEALERHLKVKSKSSQEPTAPSPMDEEALS  157 (446)
T ss_pred             HHHHcccccCCChhHHHHHHHHHHHHhcCC---hhHHHHHHHHhhhHHHHHHHHHHHHhcccccccccCCCCcchHHHHH
Confidence            999876     3332   345555555442   3334444 456888888887631        00       1333455


Q ss_pred             HHHHHHHHHhh
Q 015951          274 KAVSLVGDLAK  284 (397)
Q Consensus       274 kA~~lL~~L~~  284 (397)
                      .+..++.|+..
T Consensus       158 EiLKllFNit~  168 (446)
T PF10165_consen  158 EILKLLFNITL  168 (446)
T ss_pred             HHHHHHHHhhh
Confidence            66777777764

It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.

>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms

Probab=95.77  E-value=0.044  Score=58.42  Aligned_cols=84  Identities=12%  Similarity=0.182  Sum_probs=62.0

Q ss_pred             HHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHHH
Q 015951          171 LSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFY  250 (397)
Q Consensus       171 l~~Li~lL~s~~~~ir~~Aa~vLg~~aqNNp~~Q~~vl~~g~lp~Ll~LL~s~~~~v~~kAl~ALS~LiR~~~~~~~~f~  250 (397)
                      +..++...+ +++..+..|+..|....+.-|..++..     |..++.|..+++..+|+.|+.+|..++++++.....+ 
T Consensus        25 y~~il~~~k-g~~k~K~Laaq~I~kffk~FP~l~~~A-----i~a~~DLcEDed~~iR~~aik~lp~~ck~~~~~v~kv-   97 (556)
T PF05918_consen   25 YKEILDGVK-GSPKEKRLAAQFIPKFFKHFPDLQEEA-----INAQLDLCEDEDVQIRKQAIKGLPQLCKDNPEHVSKV-   97 (556)
T ss_dssp             HHHHHHGGG-S-HHHHHHHHHHHHHHHCC-GGGHHHH-----HHHHHHHHT-SSHHHHHHHHHHGGGG--T--T-HHHH-
T ss_pred             HHHHHHHcc-CCHHHHHHHHHHHHHHHhhChhhHHHH-----HHHHHHHHhcccHHHHHHHHHhHHHHHHhHHHHHhHH-
Confidence            334444444 578999999999999999999999865     6679999999999999999999999999988766655 


Q ss_pred             hcCcHHHHHHhhcCC
Q 015951          251 VEAGDLMLQDILGNS  265 (397)
Q Consensus       251 ~~gGi~~L~~lL~s~  265 (397)
                          ..+|+++|+++
T Consensus        98 ----aDvL~QlL~td  108 (556)
T PF05918_consen   98 ----ADVLVQLLQTD  108 (556)
T ss_dssp             ----HHHHHHHTT--
T ss_pred             ----HHHHHHHHhcc
Confidence                47899999976

Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.

>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=95.56  E-value=1.8  Score=48.75  Aligned_cols=120  Identities=15%  Similarity=0.176  Sum_probs=77.6

Q ss_pred             HHHHHHHHhh------CCCCCHHHHHHHHHHHHhccCCC----CchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHH
Q 015951          127 LIQIAIDDLN------NSTLSLEDSQRALQELLILVEPI----DNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKA  196 (397)
Q Consensus       127 lmk~~i~~L~------~~~~s~e~k~~AL~~L~~Lve~i----DnA~~~~~lGGl~~Li~lL~s~~~~ir~~Aa~vLg~~  196 (397)
                      .|.=++++|.      .+...+-.|.+||..+..+++-+    -.++.+..+ ..+-+.+.++++.--+|.+|||+++..
T Consensus       411 ~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~~~~~mE~f-lv~hVfP~f~s~~g~Lrarac~vl~~~  489 (1010)
T KOG1991|consen  411 ILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKSPYKSQMEYF-LVNHVFPEFQSPYGYLRARACWVLSQF  489 (1010)
T ss_pred             HHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCCchHHHHHHH-HHHHhhHhhcCchhHHHHHHHHHHHHH
Confidence            3444556665      22234556777777766655422    233444433 455566777888999999999999999


Q ss_pred             hcCChHHHHHHHHcCcHHHHHHhhcCCC-HHHHHHHHHHHHHHhcCChhcHHHH
Q 015951          197 SQNNPLVQKQVLELGALSKLMKMVKSSF-VEEAVKALYTVSSLIRNNLAGQEMF  249 (397)
Q Consensus       197 aqNNp~~Q~~vl~~g~lp~Ll~LL~s~~-~~v~~kAl~ALS~LiR~~~~~~~~f  249 (397)
                      +.-+=+.+..+  ..++....+.|.+++ -.|++.|..||.+++.+.+.+...+
T Consensus       490 ~~~df~d~~~l--~~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~~~~e~~  541 (1010)
T KOG1991|consen  490 SSIDFKDPNNL--SEALELTHNCLLNDNELPVRVEAALALQSFISNQEQADEKV  541 (1010)
T ss_pred             HhccCCChHHH--HHHHHHHHHHhccCCcCchhhHHHHHHHHHHhcchhhhhhH
Confidence            94322222222  235667777777444 5899999999999999887654444

>KOG2973 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.53  E-value=2.8  Score=41.72  Aligned_cols=231  Identities=21%  Similarity=0.176  Sum_probs=135.0

Q ss_pred             HHHHHHhhCCCCCHHHHHHHHHHHHhccCCCCchhHHHhc--CCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHHHHH
Q 015951          129 QIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKL--GGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQ  206 (397)
Q Consensus       129 k~~i~~L~~~~~s~e~k~~AL~~L~~Lve~iDnA~~~~~l--GGl~~Li~lL~s~~~~ir~~Aa~vLg~~aqNNp~~Q~~  206 (397)
                      .+.++.+...  +|..+..|.+.+..+.-.  --..+.+.  -.++.+.++++...+  -..|+.++.+++|+ +.+++.
T Consensus         6 ~elv~ll~~~--sP~v~~~AV~~l~~lt~~--~~~~~~~~~~~~lk~l~qL~~~~~~--~~~a~~alVnlsq~-~~l~~~   78 (353)
T KOG2973|consen    6 VELVELLHSL--SPPVRKAAVEHLLGLTGR--GLQSLSKYSEALLKDLTQLLKDLDP--AEPAATALVNLSQK-EELRKK   78 (353)
T ss_pred             HHHHHHhccC--ChHHHHHHHHHHhhcccc--chhhhccchhhhHHHHHHHccCccc--ccHHHHHHHHHHhh-HHHHHH
Confidence            3455666554  467788888888887755  22222221  346677788877666  67899999999985 778888


Q ss_pred             HHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHHHh-----cCcHHHHHHhhcCCCccHHH-HHHHHHHHH
Q 015951          207 VLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYV-----EAGDLMLQDILGNSSFEIRL-HRKAVSLVG  280 (397)
Q Consensus       207 vl~~g~lp~Ll~LL~s~~~~v~~kAl~ALS~LiR~~~~~~~~f~~-----~gGi~~L~~lL~s~~~d~kl-r~kA~~lL~  280 (397)
                      ++.. .+..++.++.+.......-.+-.++|+.|...........     ..|+.-|...+.+++.+.+. -...+.++.
T Consensus        79 ll~~-~~k~l~~~~~~p~~~lad~~cmlL~NLs~~~~~~~~ll~~~~~~~~~~lm~l~~~~~d~~~n~~a~f~ylA~vf~  157 (353)
T KOG2973|consen   79 LLQD-LLKVLMDMLTDPQSPLADLICMLLSNLSRDDDEVAALLTNLTEKKDSGLMRLARAFCDKSYNAYAEFHYLAPVFA  157 (353)
T ss_pred             HHHH-HHHHHHHHhcCcccchHHHHHHHHHHhccCchHHHHHHHhcccccccchHHHHHHHhCcccccccchhHHHHHHH
Confidence            8887 7777778887765556667777788888765443333221     13555444444333211100 122444555


Q ss_pred             HHhhchh-c----cCC----------CCcchhHHhCCcHHHHH-------------------------------------
Q 015951          281 DLAKCQL-E----NMH----------KVEPPLFRDRFFLKSVV-------------------------------------  308 (397)
Q Consensus       281 ~L~~~~l-~----~~~----------~~~~~~l~~~g~v~~Lv-------------------------------------  308 (397)
                      ||..... .    ...          .+-...++..|++..+-                                     
T Consensus       158 nls~~~~gR~l~~~~k~~p~~kll~ft~~~s~vRr~GvagtlkN~cFd~~~h~~lL~e~~~lLp~iLlPlagpee~sEEd  237 (353)
T KOG2973|consen  158 NLSQFEAGRKLLLEPKRFPDQKLLPFTSEDSQVRRGGVAGTLKNCCFDAKLHEVLLDESINLLPAILLPLAGPEELSEED  237 (353)
T ss_pred             HHhhhhhhhhHhcchhhhhHhhhhcccccchhhhccchHHHHHhhhccchhHHHHhcchHHHHHHHHhhcCCccccCHHH
Confidence            5544210 0    000          00111222333332221                                     


Q ss_pred             --------Hhcc-----CCChHHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHHHHHhHHhhhhhhhhhhHHhH
Q 015951          309 --------DLTA-----SADLDLQEKALAAIKNLLQLRTTEALVLKDFCGLDTALERLRQQLQEVMLEEDQRDYAMDV  373 (397)
Q Consensus       309 --------~lL~-----~~d~dv~E~aL~aL~~L~~~~~~~r~~~~~~~gL~~~L~~Lr~~~~~l~~~e~~~~~~~~l  373 (397)
                              +.|.     .+|++++.+.+.||..|..-.. -|+.+| ..|..+.+.-+..    --+++|-.+-|+-+
T Consensus       238 m~~LP~eLQyLp~dKeRepdpdIrk~llEai~lLcaT~~-GRe~lR-~kgvYpilRElhk----~e~ded~~~ace~v  309 (353)
T KOG2973|consen  238 MAKLPVELQYLPEDKEREPDPDIRKMLLEALLLLCATRA-GREVLR-SKGVYPILRELHK----WEEDEDIREACEQV  309 (353)
T ss_pred             HhcCCHhhhcCCccccCCCChHHHHHHHHHHHHHHhhhH-hHHHHH-hcCchHHHHHHhc----CCCcHHHHHHHHHH
Confidence                    1121     2489999999999999887654 788898 6677677654432    22566666666654

>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]

Probab=95.45  E-value=0.99  Score=49.93  Aligned_cols=160  Identities=14%  Similarity=0.173  Sum_probs=90.0

Q ss_pred             HhHHHHHHHHHhcC-CCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhccCCCCchhHHHhcCCHHHHHHhcCCCCHHH
Q 015951          107 KRQMEIKELMEKLK-TPSDAQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDI  185 (397)
Q Consensus       107 ~r~~~L~ea~~~~~-~~~d~~lmk~~i~~L~~~~~s~e~k~~AL~~L~~Lve~iDnA~~~~~lGGl~~Li~lL~s~~~~i  185 (397)
                      +|.+-+|..+..+. +.+-..+....++...  +.+.|-|.-.---|+.+.+ .+....+.   .+..+..=|.++|+.|
T Consensus        35 ~kidAmK~iIa~M~~G~dmssLf~dViK~~~--trd~ElKrL~ylYl~~yak-~~P~~~lL---avNti~kDl~d~N~~i  108 (757)
T COG5096          35 KKIDAMKKIIAQMSLGEDMSSLFPDVIKNVA--TRDVELKRLLYLYLERYAK-LKPELALL---AVNTIQKDLQDPNEEI  108 (757)
T ss_pred             HHHHHHHHHHHHHhcCCChHHHHHHHHHHHH--hcCHHHHHHHHHHHHHHhc-cCHHHHHH---HHHHHHhhccCCCHHH
Confidence            45566666665553 4443333333333333  2234444332222222222 12111111   3455556677788888


Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCC
Q 015951          186 RKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNS  265 (397)
Q Consensus       186 r~~Aa~vLg~~aqNNp~~Q~~vl~~g~lp~Ll~LL~s~~~~v~~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~  265 (397)
                      |..|.+.++.+=  .++     +-...++++.+++.++++-||+.|+.||..+-+-.   ...+.+.|-+..+..++.+.
T Consensus       109 R~~AlR~ls~l~--~~e-----l~~~~~~~ik~~l~d~~ayVRk~Aalav~kly~ld---~~l~~~~g~~~~l~~l~~D~  178 (757)
T COG5096         109 RGFALRTLSLLR--VKE-----LLGNIIDPIKKLLTDPHAYVRKTAALAVAKLYRLD---KDLYHELGLIDILKELVADS  178 (757)
T ss_pred             HHHHHHHHHhcC--hHH-----HHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhcC---HhhhhcccHHHHHHHHhhCC
Confidence            888888887662  221     22235777888888877888888888888875533   34555666677777777665


Q ss_pred             CccHHHHHHHHHHHHHHhh
Q 015951          266 SFEIRLHRKAVSLVGDLAK  284 (397)
Q Consensus       266 ~~d~klr~kA~~lL~~L~~  284 (397)
                        ++.+.+.|...+..+..
T Consensus       179 --dP~Vi~nAl~sl~~i~~  195 (757)
T COG5096         179 --DPIVIANALASLAEIDP  195 (757)
T ss_pred             --CchHHHHHHHHHHHhch
Confidence              45577777777766643

>KOG2259 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.30  E-value=0.17  Score=54.49  Aligned_cols=208  Identities=18%  Similarity=0.134  Sum_probs=121.6

Q ss_pred             HHHHHHHHHHHHhccCCCCchhHHHhcCC--------------HHHHHHhcCCCCHHHHHHHHHHHHHHhcCCh-----H
Q 015951          142 LEDSQRALQELLILVEPIDNANDLSKLGG--------------LSVLVGQLNHPDTDIRKISAWILGKASQNNP-----L  202 (397)
Q Consensus       142 ~e~k~~AL~~L~~Lve~iDnA~~~~~lGG--------------l~~Li~lL~s~~~~ir~~Aa~vLg~~aqNNp-----~  202 (397)
                      ..+++.+++.|-+++++-|..-.=+...|              ....+..+...+..||..|...+.-..+-.|     +
T Consensus       193 ~~d~~~~~~~l~~~~~~~D~~Vrt~A~eglL~L~eg~kL~~~~Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~p~~~e~e  272 (823)
T KOG2259|consen  193 THDREHAARGLIYLEHDQDFRVRTHAVEGLLALSEGFKLSKACYSRAVKHLSDDYEDVRKAAVQLVSVWGNRCPAPLERE  272 (823)
T ss_pred             cccHHHHHHHHHHHhcCCCcchHHHHHHHHHhhcccccccHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhcCCCcccch
Confidence            35667777778888888776533333333              5566778888999999999555544443332     0


Q ss_pred             HHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhc----------------------HHHH-----------
Q 015951          203 VQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAG----------------------QEMF-----------  249 (397)
Q Consensus       203 ~Q~~vl~~g~lp~Ll~LL~s~~~~v~~kAl~ALS~LiR~~~~~----------------------~~~f-----------  249 (397)
                      .-+.=+.-.++..+...+++-+-.+|+.|.-+|+.+-.-+...                      -+..           
T Consensus       273 ~~e~kl~D~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vSee~i~QTLdKKlms~lRRkr~ahkrpk~l~s~GewSsGk~  352 (823)
T KOG2259|consen  273 SEEEKLKDAAFSSVCRAVRDRSLSVRVEAAKALGEFEQVSEEIIQQTLDKKLMSRLRRKRTAHKRPKALYSSGEWSSGKE  352 (823)
T ss_pred             hhhhhhHHHHHHHHHHHHhcCceeeeehHHHHhchHHHhHHHHHHHHHHHHHhhhhhhhhhcccchHHHHhcCCcccCcc
Confidence            1111111235667777777666566665555555432111110                      0112           


Q ss_pred             -----------------HhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHHhCCcHHHHHHhcc
Q 015951          250 -----------------YVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTA  312 (397)
Q Consensus       250 -----------------~~~gGi~~L~~lL~s~~~d~klr~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~  312 (397)
                                       +..|+-..+++.|.+.  =..+|+.|+.-++.|+.     +.|.+..     ..+..|+++++
T Consensus       353 ~~advpsee~d~~~~siI~sGACGA~VhGlEDE--f~EVR~AAV~Sl~~La~-----ssP~FA~-----~aldfLvDMfN  420 (823)
T KOG2259|consen  353 WNADVPSEEDDEEEESIIPSGACGALVHGLEDE--FYEVRRAAVASLCSLAT-----SSPGFAV-----RALDFLVDMFN  420 (823)
T ss_pred             ccccCchhhccccccccccccccceeeeechHH--HHHHHHHHHHHHHHHHc-----CCCCcHH-----HHHHHHHHHhc
Confidence                             2233345666666654  34589999999999985     3455433     34678899999


Q ss_pred             CCChHHHHHHHHHHHHHhcCChHHHHHHHhc-CChHHHHHHHHHHhHHhh
Q 015951          313 SADLDLQEKALAAIKNLLQLRTTEALVLKDF-CGLDTALERLRQQLQEVM  361 (397)
Q Consensus       313 ~~d~dv~E~aL~aL~~L~~~~~~~r~~~~~~-~gL~~~L~~Lr~~~~~l~  361 (397)
                      .+..+|+.+|+.+|..++.+-....+.+... ..|+..-...|..++++.
T Consensus       421 DE~~~VRL~ai~aL~~Is~~l~i~eeql~~il~~L~D~s~dvRe~l~elL  470 (823)
T KOG2259|consen  421 DEIEVVRLKAIFALTMISVHLAIREEQLRQILESLEDRSVDVREALRELL  470 (823)
T ss_pred             cHHHHHHHHHHHHHHHHHHHheecHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence            9999999999999999887632111122211 223444444555555544

>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1

Probab=95.29  E-value=0.2  Score=48.62  Aligned_cols=102  Identities=18%  Similarity=0.079  Sum_probs=84.4

Q ss_pred             HHHHHHHHHHHhccC-CCCchhHHHhcCCHHHHHHhc-CCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCcHHHHHHhh
Q 015951          143 EDSQRALQELLILVE-PIDNANDLSKLGGLSVLVGQL-NHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMV  220 (397)
Q Consensus       143 e~k~~AL~~L~~Lve-~iDnA~~~~~lGGl~~Li~lL-~s~~~~ir~~Aa~vLg~~aqNNp~~Q~~vl~~g~lp~Ll~LL  220 (397)
                      .....||..|+.++- ..+...-|+..+++..++++| .+..+.++..+..++-++.-.+|..+..|-+.+|+..++.++
T Consensus       106 ~li~~aL~vLQGl~LLHp~Sr~lF~r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~N~r~FE~~~Gl~~v~~ll  185 (257)
T PF08045_consen  106 SLIALALRVLQGLCLLHPPSRKLFHREQNMELLLDLLSPSNPPAIQSACLDTLVCILLDSPENQRDFEELNGLSTVCSLL  185 (257)
T ss_pred             HHHHHHHHHHHHHHHcCchHHHHHhhhhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcChHHHHHHHHhCCHHHHHHHH
Confidence            346678999998774 356677899999999999999 456799999999999999999999999999999999999999


Q ss_pred             cCCC--HHHHHHHHHHHHHHhcCChh
Q 015951          221 KSSF--VEEAVKALYTVSSLIRNNLA  244 (397)
Q Consensus       221 ~s~~--~~v~~kAl~ALS~LiR~~~~  244 (397)
                      ++.+  .+++.|.+--|--.+-.-.+
T Consensus       186 k~~~~~~~~r~K~~EFL~fyl~~E~~  211 (257)
T PF08045_consen  186 KSKSTDRELRLKCIEFLYFYLMPETP  211 (257)
T ss_pred             ccccccHHHhHHHHHHHHHHHcccCC
Confidence            9865  57888877666655544333

Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].

>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]

Probab=95.27  E-value=0.45  Score=53.18  Aligned_cols=183  Identities=17%  Similarity=0.139  Sum_probs=108.0

Q ss_pred             HHHHHHHHHHhhCCCCCHHHHHHHHHHHHhccCCCCchhHHHhcCCHH-HHHHhcCCCCHHHHHHHHHHHHHHhcCChHH
Q 015951          125 AQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLS-VLVGQLNHPDTDIRKISAWILGKASQNNPLV  203 (397)
Q Consensus       125 ~~lmk~~i~~L~~~~~s~e~k~~AL~~L~~Lve~iDnA~~~~~lGGl~-~Li~lL~s~~~~ir~~Aa~vLg~~aqNNp~~  203 (397)
                      ..+..+++..+.++..+...|+-|+-.|-++    +...+.-...+++ .+++.++|++++|+..|+.+||+++-+|-. 
T Consensus       816 ~s~a~kl~~~~~s~~s~~~ikvfa~LslGEl----gr~~~~s~~~e~~~~iieaf~sp~edvksAAs~ALGsl~vgnl~-  890 (1233)
T KOG1824|consen  816 KSLATKLIQDLQSPKSSDSIKVFALLSLGEL----GRRKDLSPQNELKDTIIEAFNSPSEDVKSAASYALGSLAVGNLP-  890 (1233)
T ss_pred             hhHHHHHHHHHhCCCCchhHHHHHHhhhhhh----ccCCCCCcchhhHHHHHHHcCCChHHHHHHHHHHhhhhhcCchH-
Confidence            3455667777777766666777777777654    3333333344444 556899999999999999999999985421 


Q ss_pred             HHHHHHcCcHHHHHHhhcCCC-----------------------------------------HHHHHHHHHHHHHHhcCC
Q 015951          204 QKQVLELGALSKLMKMVKSSF-----------------------------------------VEEAVKALYTVSSLIRNN  242 (397)
Q Consensus       204 Q~~vl~~g~lp~Ll~LL~s~~-----------------------------------------~~v~~kAl~ALS~LiR~~  242 (397)
                             ..+|.++....+..                                         +..|.-..-+|+-++-.+
T Consensus       891 -------~yLpfil~qi~sqpk~QyLLLhSlkevi~~~svd~~~~~v~~IW~lL~k~cE~~eegtR~vvAECLGkL~l~e  963 (1233)
T KOG1824|consen  891 -------KYLPFILEQIESQPKRQYLLLHSLKEVIVSASVDGLKPYVEKIWALLFKHCECAEEGTRNVVAECLGKLVLIE  963 (1233)
T ss_pred             -------hHHHHHHHHHhcchHhHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHhcccchhhhHHHHHHHhhhHHhCC
Confidence                   23333333333321                                         111222222333332222


Q ss_pred             hhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHHhCCcHHHHHHhccCCChHHHHHH
Q 015951          243 LAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKA  322 (397)
Q Consensus       243 ~~~~~~f~~~gGi~~L~~lL~s~~~d~klr~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~dv~E~a  322 (397)
                      |.        .-++.|...+.++.  ...|.-+++++.+..+.     ++.-...+.. ..+.....+++.+|..|+..|
T Consensus       964 pe--------sLlpkL~~~~~S~a--~~~rs~vvsavKfsisd-----~p~~id~~lk-~~ig~fl~~~~dpDl~Vrrva 1027 (1233)
T KOG1824|consen  964 PE--------SLLPKLKLLLRSEA--SNTRSSVVSAVKFSISD-----QPQPIDPLLK-QQIGDFLKLLRDPDLEVRRVA 1027 (1233)
T ss_pred             hH--------HHHHHHHHHhcCCC--cchhhhhhheeeeeecC-----CCCccCHHHH-HHHHHHHHHHhCCchhHHHHH
Confidence            21        12344555555552  23555666666655542     3333333332 345566778899999999999


Q ss_pred             HHHHHHHhcCChH
Q 015951          323 LAAIKNLLQLRTT  335 (397)
Q Consensus       323 L~aL~~L~~~~~~  335 (397)
                      +.++.+.+.+.+.
T Consensus      1028 Lvv~nSaahNKps 1040 (1233)
T KOG1824|consen 1028 LVVLNSAAHNKPS 1040 (1233)
T ss_pred             HHHHHHHHccCHh
Confidence            9999999977543

>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1

Probab=95.25  E-value=0.52  Score=42.79  Aligned_cols=90  Identities=21%  Similarity=0.213  Sum_probs=71.6

Q ss_pred             CHHHHHHHHHHHHHHhcCChHHHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCc--HHHHH
Q 015951          182 DTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAG--DLMLQ  259 (397)
Q Consensus       182 ~~~ir~~Aa~vLg~~aqNNp~~Q~~vl~~g~lp~Ll~LL~s~~~~v~~kAl~ALS~LiR~~~~~~~~f~~~gG--i~~L~  259 (397)
                      +|.||..+.-++|-++...|..-+     ..+|.+...|.++++.||..|+..|+.++.+.      +++..|  +..+.
T Consensus         1 ~~~vR~n~i~~l~DL~~r~~~~ve-----~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d------~ik~k~~l~~~~l   69 (178)
T PF12717_consen    1 DPSVRNNAIIALGDLCIRYPNLVE-----PYLPNLYKCLRDEDPLVRKTALLVLSHLILED------MIKVKGQLFSRIL   69 (178)
T ss_pred             CHHHHHHHHHHHHHHHHhCcHHHH-----hHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcC------ceeehhhhhHHHH
Confidence            588999999999999988774333     36899999999999999999999999998653      222222  25666


Q ss_pred             HhhcCCCccHHHHHHHHHHHHHHhh
Q 015951          260 DILGNSSFEIRLHRKAVSLVGDLAK  284 (397)
Q Consensus       260 ~lL~s~~~d~klr~kA~~lL~~L~~  284 (397)
                      .++.++  +..+|..|..++..+..
T Consensus        70 ~~l~D~--~~~Ir~~A~~~~~e~~~   92 (178)
T PF12717_consen   70 KLLVDE--NPEIRSLARSFFSELLK   92 (178)
T ss_pred             HHHcCC--CHHHHHHHHHHHHHHHH
Confidence            777766  66799999999999875

>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []

Probab=95.19  E-value=0.45  Score=46.08  Aligned_cols=170  Identities=15%  Similarity=0.102  Sum_probs=116.2

Q ss_pred             CHHHHHHHHHHHhhCCC---CCH---HHHHHHHHHHHhccCCCCchhHHHhcCCHHHHHHhcCCC-----CHHHHHHHHH
Q 015951          123 SDAQLIQIAIDDLNNST---LSL---EDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHP-----DTDIRKISAW  191 (397)
Q Consensus       123 ~d~~lmk~~i~~L~~~~---~s~---e~k~~AL~~L~~Lve~iDnA~~~~~lGGl~~Li~lL~s~-----~~~ir~~Aa~  191 (397)
                      +-+.+.++.+.++..-+   .+.   ..-.+||.-|+-.+...|....|.+..-.--|.++|+.+     -+-+|-.+..
T Consensus        39 ~i~~LLqEIisiYp~l~~~~Lt~~~snRVcnaLaLlQ~vAshpetr~~Fl~a~iplyLyPfL~tt~k~r~~E~LRLtsLG  118 (262)
T PF04078_consen   39 TIAALLQEIISIYPALSPPNLTARQSNRVCNALALLQCVASHPETRMPFLKAHIPLYLYPFLNTTSKTRPFEYLRLTSLG  118 (262)
T ss_dssp             HHHHHHHHHHGGGGGTTTT---HHHHHHHHHHHHHHHHHHH-TTTHHHHHHTTGGGGGHHHHH----SHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHcccCCCcccCHHHHHHHHHHHHHHHHHHcChHHHHHHHHcCchhhehhhhhccccccccchhhHhHHH
Confidence            34567777777764322   233   234578888888888899999999987766666777543     3679999999


Q ss_pred             HHHHHhcC-ChHHHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChh------cHHHHHh-cCcHHHHHHhhc
Q 015951          192 ILGKASQN-NPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLA------GQEMFYV-EAGDLMLQDILG  263 (397)
Q Consensus       192 vLg~~aqN-Np~~Q~~vl~~g~lp~Ll~LL~s~~~~v~~kAl~ALS~LiR~~~~------~~~~f~~-~gGi~~L~~lL~  263 (397)
                      +||.++++ ++++-..+++...+|..++.+..+++--+..|.|-+.-++-+...      ..+.|.. ...+..++..+.
T Consensus       119 VIgaLvK~d~~evi~fLl~tEiiplcLr~me~GselSKtvAtfIlqKIL~dd~GL~yiC~t~eRf~av~~vL~~mV~~l~  198 (262)
T PF04078_consen  119 VIGALVKTDDPEVISFLLQTEIIPLCLRIMEFGSELSKTVATFILQKILLDDVGLNYICQTAERFFAVAMVLNKMVEQLV  198 (262)
T ss_dssp             HHHHHHTT--HHHHHHHHCTTHHHHHHHHHHHS-HHHHHHHHHHHHHHHHSHHHHHHHTSSHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHcCCcHHHHHHHHhhchHHHHHHHHHhccHHHHHHHHHHHHHHHcchhHHHHHhcCHHHHHHHHHHHHHHHHHHc
Confidence            99999984 667888888999999999999998877788999999888765432      2244443 234444444443


Q ss_pred             CCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHH
Q 015951          264 NSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFR  299 (397)
Q Consensus       264 s~~~d~klr~kA~~lL~~L~~~~l~~~~~~~~~~l~  299 (397)
                      .. .+.|+-+.+..+-..|+.      ++..++.+.
T Consensus       199 ~~-pS~RLLKhIIrCYlRLsd------nprar~aL~  227 (262)
T PF04078_consen  199 KQ-PSPRLLKHIIRCYLRLSD------NPRAREALR  227 (262)
T ss_dssp             HS---HHHHHHHHHHHHHHTT------STTHHHHHH
T ss_pred             cC-CChhHHHHHHHHHHHHcc------CHHHHHHHH
Confidence            22 266788888888888774      555555554

Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.

>KOG2734 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.18  E-value=3.5  Score=42.84  Aligned_cols=223  Identities=15%  Similarity=0.075  Sum_probs=145.1

Q ss_pred             HHHHHHHHHhccCCCCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcC-------C--hHHHHHHHHcCcHHH
Q 015951          145 SQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQN-------N--PLVQKQVLELGALSK  215 (397)
Q Consensus       145 k~~AL~~L~~Lve~iDnA~~~~~lGGl~~Li~lL~s~~~~ir~~Aa~vLg~~aqN-------N--p~~Q~~vl~~g~lp~  215 (397)
                      ...+++.+--+....|-=-.|++++|++.++++|.|.|.+|-......+..+.--       +  ...-++.++.++++.
T Consensus       101 Lhd~IQ~mhvlAt~PdLYp~lveln~V~slL~LLgHeNtDI~iavvdLLqELTD~Dv~~es~egAevLidaLvdg~vlaL  180 (536)
T KOG2734|consen  101 LHDIIQEMHVLATMPDLYPILVELNAVQSLLELLGHENTDIAIAVVDLLQELTDEDVLYESEEGAEVLIDALVDGQVLAL  180 (536)
T ss_pred             HHHHHHHHHhhhcChHHHHHHHHhccHHHHHHHhcCCCchhHHHHHHHHHHhhhhcccccccccHHHHHHHHHhccHHHH
Confidence            3455677777778888888999999999999999999999999999999888732       1  135567778899999


Q ss_pred             HHHhhcCCCHHH------HHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhcc
Q 015951          216 LMKMVKSSFVEE------AVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLEN  289 (397)
Q Consensus       216 Ll~LL~s~~~~v------~~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klr~kA~~lL~~L~~~~l~~  289 (397)
                      |++.+..=++++      ...++.-+-|++.-.+......++.|-+.-|..-+.....-..-+..|.-.++-+..+    
T Consensus       181 LvqnveRLdEsvkeea~gv~~~L~vveNlv~~r~~~~~~~~e~~ll~WLL~rl~~k~~f~aNk~YasEiLaillq~----  256 (536)
T KOG2734|consen  181 LVQNVERLDESVKEEADGVHNTLAVVENLVEVRPAICTEIVEQGLLSWLLKRLKGKAAFDANKQYASEILAILLQN----  256 (536)
T ss_pred             HHHHHHHhhhcchhhhhhhHHHHHHHHHHHhccHHHHHHHHHhhHHHHHHHHHhcccCcchhHHHHHHHHHHHhcc----
Confidence            999887433322      2345555566666556666777777656655543332211122456677777766642    


Q ss_pred             CCCCcchhHHhCCcHHHHHHhccC---------CChHHHHHHHHHHHHHhcCChHHHHHHHhcCChHH--HHHHHHHHh-
Q 015951          290 MHKVEPPLFRDRFFLKSVVDLTAS---------ADLDLQEKALAAIKNLLQLRTTEALVLKDFCGLDT--ALERLRQQL-  357 (397)
Q Consensus       290 ~~~~~~~~l~~~g~v~~Lv~lL~~---------~d~dv~E~aL~aL~~L~~~~~~~r~~~~~~~gL~~--~L~~Lr~~~-  357 (397)
                       +.+.+..+-.-..+..+..-+..         +....-|+.-.+|+++...+. .|..|-..-|+.-  ++.+.+... 
T Consensus       257 -s~e~~~~~~~l~GiD~lL~~la~yk~~dP~~~~E~EmmeNLFdcLCs~lm~~~-nr~~Fl~~EGlqLm~Lmlr~Kk~sr  334 (536)
T KOG2734|consen  257 -SDENRKLLGPLDGIDVLLRQLAVYKRHDPATVDEEEMMENLFDCLCSLLMAPA-NRERFLKGEGLQLMNLMLREKKVSR  334 (536)
T ss_pred             -CchhhhhhcCcccHHHHHhhcchhhccCCCCcCHHHHHHHHHHHHHHHhcChh-hhhhhhccccHHHHHHHHHHHHHhh
Confidence             22345555555666666655432         245788899999999998865 6777776667533  333332221 


Q ss_pred             -------HHhhhhhhhhhhHHhH
Q 015951          358 -------QEVMLEEDQRDYAMDV  373 (397)
Q Consensus       358 -------~~l~~~e~~~~~~~~l  373 (397)
                             +..+.-.+.++||..+
T Consensus       335 ~SalkvLd~am~g~~gt~~C~kf  357 (536)
T KOG2734|consen  335 GSALKVLDHAMFGPEGTPNCNKF  357 (536)
T ss_pred             hhHHHHHHHHHhCCCchHHHHHH
Confidence                   1223345578888764

>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]

Probab=95.08  E-value=0.9  Score=48.52  Aligned_cols=172  Identities=16%  Similarity=0.144  Sum_probs=112.0

Q ss_pred             HHHHHHHHHHHhccCCCCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhc--CChHHHHHHHHcCcHHHHHHhh
Q 015951          143 EDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQ--NNPLVQKQVLELGALSKLMKMV  220 (397)
Q Consensus       143 e~k~~AL~~L~~Lve~iDnA~~~~~lGGl~~Li~lL~s~~~~ir~~Aa~vLg~~aq--NNp~~Q~~vl~~g~lp~Ll~LL  220 (397)
                      ..|..+++-+.-+.+..+-.-.++--..+|.+.+.|..+.+++|..+-.+|-.++.  .||..|.      .+|.|++.+
T Consensus       269 rtK~aslellg~m~~~ap~qLs~~lp~iiP~lsevl~DT~~evr~a~~~~l~~~~svidN~dI~~------~ip~Lld~l  342 (569)
T KOG1242|consen  269 RTKMASLELLGAMADCAPKQLSLCLPDLIPVLSEVLWDTKPEVRKAGIETLLKFGSVIDNPDIQK------IIPTLLDAL  342 (569)
T ss_pred             hhHHHHHHHHHHHHHhchHHHHHHHhHhhHHHHHHHccCCHHHHHHHHHHHHHHHHhhccHHHHH------HHHHHHHHh
Confidence            45778888888776666666666666789999999999999999999999988775  5676554      579999999


Q ss_pred             cCCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCC--CccHHHHHHHHHHHHHHhhchhccCCCC-cchh
Q 015951          221 KSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNS--SFEIRLHRKAVSLVGDLAKCQLENMHKV-EPPL  297 (397)
Q Consensus       221 ~s~~~~v~~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~--~~d~klr~kA~~lL~~L~~~~l~~~~~~-~~~~  297 (397)
                      .+++..+ .+++..|+.-.      .-.++++--+.+++.+|+.+  ..+..++++++-.+.|+|..-   .++. ..+.
T Consensus       343 ~dp~~~~-~e~~~~L~~tt------FV~~V~~psLalmvpiL~R~l~eRst~~kr~t~~IidNm~~Lv---eDp~~lapf  412 (569)
T KOG1242|consen  343 ADPSCYT-PECLDSLGATT------FVAEVDAPSLALMVPILKRGLAERSTSIKRKTAIIIDNMCKLV---EDPKDLAPF  412 (569)
T ss_pred             cCcccch-HHHHHhhccee------eeeeecchhHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHhh---cCHHHHhhh
Confidence            8765322 23333333211      11233445566666665422  013347899999999999731   1221 1111


Q ss_pred             HHhCCcHHHHHHhccCCChHHHHHHHHHHHHHhcC
Q 015951          298 FRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQL  332 (397)
Q Consensus       298 l~~~g~v~~Lv~lL~~~d~dv~E~aL~aL~~L~~~  332 (397)
                      +-  .+++.+=..+....+++|+.+++||..+...
T Consensus       413 l~--~Llp~lk~~~~d~~PEvR~vaarAL~~l~e~  445 (569)
T KOG1242|consen  413 LP--SLLPGLKENLDDAVPEVRAVAARALGALLER  445 (569)
T ss_pred             HH--HHhhHHHHHhcCCChhHHHHHHHHHHHHHHH
Confidence            11  2333333444455899999999999888754

>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule)

Probab=95.01  E-value=0.57  Score=40.63  Aligned_cols=72  Identities=17%  Similarity=0.089  Sum_probs=58.5

Q ss_pred             HHHHHhcCCCCHHHHHHHHHHHHHHhcCChH-HHHHHHHcCcHHHHHHhhcCC---CHHHHHHHHHHHHHHhcCCh
Q 015951          172 SVLVGQLNHPDTDIRKISAWILGKASQNNPL-VQKQVLELGALSKLMKMVKSS---FVEEAVKALYTVSSLIRNNL  243 (397)
Q Consensus       172 ~~Li~lL~s~~~~ir~~Aa~vLg~~aqNNp~-~Q~~vl~~g~lp~Ll~LL~s~---~~~v~~kAl~ALS~LiR~~~  243 (397)
                      ..|-.-|+++++.++..|..+|-.+++|... ++..+.....+..|++++...   +..|+.|++.-|-+-...++
T Consensus        40 raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~~~f~  115 (133)
T cd03561          40 RAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWSESFG  115 (133)
T ss_pred             HHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHhc
Confidence            3344567889999999999999999999865 888888888888899999863   46889998888877655544

It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me

>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region

Probab=94.92  E-value=0.12  Score=42.64  Aligned_cols=67  Identities=15%  Similarity=0.119  Sum_probs=51.4

Q ss_pred             CCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHHHHHHHH--cCcHHHHHHhhcCCCHHHHHHHHHHHHHHh
Q 015951          169 GGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLE--LGALSKLMKMVKSSFVEEAVKALYTVSSLI  239 (397)
Q Consensus       169 GGl~~Li~lL~s~~~~ir~~Aa~vLg~~aqNNp~~Q~~vl~--~g~lp~Ll~LL~s~~~~v~~kAl~ALS~Li  239 (397)
                      --+++++.++..++..||..||.+|.+++..   .+..++.  ...++.|.+++.+.++.||..| .-|-.++
T Consensus        27 ~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~---~~~~~l~~f~~IF~~L~kl~~D~d~~Vr~~a-~~Ld~ll   95 (97)
T PF12755_consen   27 EILPPVLKCFDDQDSRVRYYACEALYNISKV---ARGEILPYFNEIFDALCKLSADPDENVRSAA-ELLDRLL   95 (97)
T ss_pred             HHHHHHHHHcCCCcHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHcCCchhHHHHH-HHHHHHh
Confidence            3589999999999999999999999999964   4555553  2577888888888888877655 4444443

>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=94.92  E-value=0.57  Score=50.68  Aligned_cols=179  Identities=15%  Similarity=0.142  Sum_probs=115.2

Q ss_pred             HHHHHHHHhccCCCC-chhHHHhc-CCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHHHHHHH--HcCcHHHHHHhhc
Q 015951          146 QRALQELLILVEPID-NANDLSKL-GGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVL--ELGALSKLMKMVK  221 (397)
Q Consensus       146 ~~AL~~L~~Lve~iD-nA~~~~~l-GGl~~Li~lL~s~~~~ir~~Aa~vLg~~aqNNp~~Q~~vl--~~g~lp~Ll~LL~  221 (397)
                      +.+|+-+..|++... ....++.- |....++.|+..+-|+||..|...||.++...+   +.+.  -...+|.|-.-++
T Consensus       637 I~sLDL~SGLaegLg~~ie~Lva~snl~~lll~C~~D~~peVRQS~FALLGDltk~c~---~~v~p~~~~fl~~lg~Nl~  713 (885)
T KOG2023|consen  637 IVSLDLLSGLAEGLGSHIEPLVAQSNLLDLLLQCLQDEVPEVRQSAFALLGDLTKACF---EHVIPNLADFLPILGANLN  713 (885)
T ss_pred             EEeHHHHhHHHHHhhhchHHHhhhccHHHHHHHHhccCChHHHHHHHHHHHHHHHHHH---HhccchHHHHHHHHhhcCC
Confidence            346666666666543 23334433 445566689999999999999999999997532   2222  1245666666666


Q ss_pred             CCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHHhC
Q 015951          222 SSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDR  301 (397)
Q Consensus       222 s~~~~v~~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klr~kA~~lL~~L~~~~l~~~~~~~~~~l~~~  301 (397)
                      .+..++.-.|+|||+-++-......+.++ ...+.-|..+++.++++..+-.+.+-.++.|..     ..|+...--.+ 
T Consensus       714 ~~~isv~nNA~WAiGeia~k~g~~~~~~v-~~vl~~L~~iin~~~~~~tllENtAITIGrLg~-----~~Pe~vAp~l~-  786 (885)
T KOG2023|consen  714 PENISVCNNAIWAIGEIALKMGLKMKQYV-SPVLEDLITIINRQNTPKTLLENTAITIGRLGY-----ICPEEVAPHLD-  786 (885)
T ss_pred             hhhchHHHHHHHHHHHHHHHhchhhhhHH-HHHHHHHHHHhcccCchHHHHHhhhhhhhhhhc-----cCHHhcchhHH-
Confidence            66677888999999988765444434443 345667777778776677778888888877754     12222111112 


Q ss_pred             CcHHHHHHhccC-CChHHHHHHHHHHHHHhcCCh
Q 015951          302 FFLKSVVDLTAS-ADLDLQEKALAAIKNLLQLRT  334 (397)
Q Consensus       302 g~v~~Lv~lL~~-~d~dv~E~aL~aL~~L~~~~~  334 (397)
                      .+++.-..-|+. +|..-++.|-+.+.++...++
T Consensus       787 ~f~~pWc~sl~~i~DneEK~sAFrG~c~mi~vNp  820 (885)
T KOG2023|consen  787 SFMRPWCTSLRNIDDNEEKESAFRGLCNMINVNP  820 (885)
T ss_pred             HHHHHHHHHhcccccchhHHHHHHHHHHheeeCc
Confidence            233333333443 566788899999999888765

>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []

Probab=94.85  E-value=0.052  Score=34.95  Aligned_cols=30  Identities=13%  Similarity=0.171  Sum_probs=26.5

Q ss_pred             cHHHHHHhhcCCCHHHHHHHHHHHHHHhcC
Q 015951          212 ALSKLMKMVKSSFVEEAVKALYTVSSLIRN  241 (397)
Q Consensus       212 ~lp~Ll~LL~s~~~~v~~kAl~ALS~LiR~  241 (397)
                      .+|.+++++++++++||..|+++|+.++++
T Consensus         1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~~   30 (31)
T PF02985_consen    1 LLPILLQLLNDPSPEVRQAAAECLGAIAEH   30 (31)
T ss_dssp             HHHHHHHHHT-SSHHHHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence            379999999999999999999999999865

Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....

>COG1413 FOG: HEAT repeat [Energy production and conversion]

Probab=94.78  E-value=0.44  Score=47.11  Aligned_cols=93  Identities=18%  Similarity=0.157  Sum_probs=75.0

Q ss_pred             CCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHH
Q 015951          169 GGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEM  248 (397)
Q Consensus       169 GGl~~Li~lL~s~~~~ir~~Aa~vLg~~aqNNp~~Q~~vl~~g~lp~Ll~LL~s~~~~v~~kAl~ALS~LiR~~~~~~~~  248 (397)
                      -.++.++.++.+++..+|..|++.++.....           -++|.|..++.+.+..+|..|+++|+.+  +++.    
T Consensus        43 ~~~~~~~~~l~~~~~~vr~~aa~~l~~~~~~-----------~av~~l~~~l~d~~~~vr~~a~~aLg~~--~~~~----  105 (335)
T COG1413          43 EAADELLKLLEDEDLLVRLSAAVALGELGSE-----------EAVPLLRELLSDEDPRVRDAAADALGEL--GDPE----  105 (335)
T ss_pred             hhHHHHHHHHcCCCHHHHHHHHHHHhhhchH-----------HHHHHHHHHhcCCCHHHHHHHHHHHHcc--CChh----
Confidence            4788888999999999999999997776532           4799999999999999999999988876  2333    


Q ss_pred             HHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhh
Q 015951          249 FYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAK  284 (397)
Q Consensus       249 f~~~gGi~~L~~lL~s~~~d~klr~kA~~lL~~L~~  284 (397)
                           .++.|+.++.++ .+..+|..++++|..+-.
T Consensus       106 -----a~~~li~~l~~d-~~~~vR~~aa~aL~~~~~  135 (335)
T COG1413         106 -----AVPPLVELLEND-ENEGVRAAAARALGKLGD  135 (335)
T ss_pred             -----HHHHHHHHHHcC-CcHhHHHHHHHHHHhcCc
Confidence                 456677888742 367799999999998753

>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=94.74  E-value=0.67  Score=50.97  Aligned_cols=186  Identities=19%  Similarity=0.206  Sum_probs=111.5

Q ss_pred             CCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhccCCCCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcC
Q 015951          120 KTPSDAQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQN  199 (397)
Q Consensus       120 ~~~~d~~lmk~~i~~L~~~~~s~e~k~~AL~~L~~Lve~iDnA~~~~~lGGl~~Li~lL~s~~~~ir~~Aa~vLg~~aqN  199 (397)
                      |-|+-+-.| +|++.+.++.+. |-|+.=|-....|=|..|    ++-+ ..-.|.+=|+|++--+...|.-+||+++. 
T Consensus        65 GypahFGqi-eclKLias~~f~-dKRiGYLaamLlLdE~qd----vllL-ltNslknDL~s~nq~vVglAL~alg~i~s-  136 (866)
T KOG1062|consen   65 GYPAHFGQI-ECLKLIASDNFL-DKRIGYLAAMLLLDERQD----LLLL-LTNSLKNDLNSSNQYVVGLALCALGNICS-  136 (866)
T ss_pred             CCCccchhh-HHHHHhcCCCch-HHHHHHHHHHHHhccchH----HHHH-HHHHHHhhccCCCeeehHHHHHHhhccCC-
Confidence            445544443 466666666655 566665555554434433    2211 11123345788999999999999999984 


Q ss_pred             ChHHHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHH
Q 015951          200 NPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLV  279 (397)
Q Consensus       200 Np~~Q~~vl~~g~lp~Ll~LL~s~~~~v~~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klr~kA~~lL  279 (397)
                       |+.-     ....|.+-+++++.++-+|+||+.|.--++|.-|...+.|+.     .-..+|.+.  +..+-.-++.++
T Consensus       137 -~Ema-----rdlapeVe~Ll~~~~~~irKKA~Lca~r~irK~P~l~e~f~~-----~~~~lL~ek--~hGVL~~~l~l~  203 (866)
T KOG1062|consen  137 -PEMA-----RDLAPEVERLLQHRDPYIRKKAALCAVRFIRKVPDLVEHFVI-----AFRKLLCEK--HHGVLIAGLHLI  203 (866)
T ss_pred             -HHHh-----HHhhHHHHHHHhCCCHHHHHHHHHHHHHHHHcCchHHHHhhH-----HHHHHHhhc--CCceeeeHHHHH
Confidence             4322     246788889999988999999999999999999887777752     223344433  223444555566


Q ss_pred             HHHhhchhccCCCCcchhHHhCCcHHHHHHhccC---------------CChHHHHHHHHHHHHHhcCC
Q 015951          280 GDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTAS---------------ADLDLQEKALAAIKNLLQLR  333 (397)
Q Consensus       280 ~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~---------------~d~dv~E~aL~aL~~L~~~~  333 (397)
                      ..||.     .+++....+.+  +++.+|..|+.               +||=+|-+.++.|+-|-+..
T Consensus       204 ~e~c~-----~~~~~l~~fr~--l~~~lV~iLk~l~~~~yspeydv~gi~dPFLQi~iLrlLriLGq~d  265 (866)
T KOG1062|consen  204 TELCK-----ISPDALSYFRD--LVPSLVKILKQLTNSGYSPEYDVHGISDPFLQIRILRLLRILGQND  265 (866)
T ss_pred             HHHHh-----cCHHHHHHHHH--HHHHHHHHHHHHhcCCCCCccCccCCCchHHHHHHHHHHHHhcCCC
Confidence            66664     23344444443  33333333321               25555666665555555543

>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=94.72  E-value=0.24  Score=53.99  Aligned_cols=153  Identities=12%  Similarity=0.062  Sum_probs=107.2

Q ss_pred             CCHHHHHHhcCC--CC-----HHHHHHHHHHHHHHhcCChHHHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcC
Q 015951          169 GGLSVLVGQLNH--PD-----TDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRN  241 (397)
Q Consensus       169 GGl~~Li~lL~s--~~-----~~ir~~Aa~vLg~~aqNNp~~Q~~vl~~g~lp~Ll~LL~s~~~~v~~kAl~ALS~LiR~  241 (397)
                      +.+|.|+++|..  ++     =.+-..|..||.-.+|.   +.+.++. -++|-+=+-+++++-.-|..|+.|.+|+.-+
T Consensus       319 ~v~P~Ll~~L~kqde~~d~DdWnp~kAAg~CL~l~A~~---~~D~Iv~-~Vl~Fiee~i~~pdwr~reaavmAFGSIl~g  394 (859)
T KOG1241|consen  319 DVVPVLLELLTKQDEDDDDDDWNPAKAAGVCLMLFAQC---VGDDIVP-HVLPFIEENIQNPDWRNREAAVMAFGSILEG  394 (859)
T ss_pred             HhhHHHHHHHHhCCCCcccccCcHHHHHHHHHHHHHHH---hcccchh-hhHHHHHHhcCCcchhhhhHHHHHHHhhhcC
Confidence            456677787744  21     23677788888888875   4455554 3555555566676667789999999999987


Q ss_pred             ChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHHhCCcHHHHHHhccCCChHHHHH
Q 015951          242 NLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEK  321 (397)
Q Consensus       242 ~~~~~~~f~~~gGi~~L~~lL~s~~~d~klr~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~dv~E~  321 (397)
                      -.+.+..-+..++++.++.++.++  ..-++.-++|.++.++..    ..+.......-.+.+..+++-|+. .+.+-.+
T Consensus       395 p~~~~Lt~iV~qalp~ii~lm~D~--sl~VkdTaAwtlgrI~d~----l~e~~~n~~~l~~~l~~l~~gL~D-ePrva~N  467 (859)
T KOG1241|consen  395 PEPDKLTPIVIQALPSIINLMSDP--SLWVKDTAAWTLGRIADF----LPEAIINQELLQSKLSALLEGLND-EPRVASN  467 (859)
T ss_pred             CchhhhhHHHhhhhHHHHHHhcCc--hhhhcchHHHHHHHHHhh----chhhcccHhhhhHHHHHHHHHhhh-CchHHHH
Confidence            666666667789999999999976  445778899999999863    122222333334555555555543 6788899


Q ss_pred             HHHHHHHHhcC
Q 015951          322 ALAAIKNLLQL  332 (397)
Q Consensus       322 aL~aL~~L~~~  332 (397)
                      +..|+.+|+..
T Consensus       468 ~CWAf~~Laea  478 (859)
T KOG1241|consen  468 VCWAFISLAEA  478 (859)
T ss_pred             HHHHHHHHHHH
Confidence            99999999854

>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=94.71  E-value=0.77  Score=50.23  Aligned_cols=163  Identities=18%  Similarity=0.155  Sum_probs=123.1

Q ss_pred             HHHHHH-HHHHHhccCCCCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCcHHHHHHhhc
Q 015951          143 EDSQRA-LQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVK  221 (397)
Q Consensus       143 e~k~~A-L~~L~~Lve~iDnA~~~~~lGGl~~Li~lL~s~~~~ir~~Aa~vLg~~aqNNp~~Q~~vl~~g~lp~Ll~LL~  221 (397)
                      +.+..| -..+.+..-..|+      .+.++.++.+....+-+++...---+.+-++..|.-+.     ++++.+++=..
T Consensus        28 ~kr~~a~kkvIa~Mt~G~Dv------SslF~dvvk~~~T~dlelKKlvyLYl~nYa~~~P~~a~-----~avnt~~kD~~   96 (734)
T KOG1061|consen   28 EKRKDAVKKVIAYMTVGKDV------SSLFPDVVKCMQTRDLELKKLVYLYLMNYAKGKPDLAI-----LAVNTFLKDCE   96 (734)
T ss_pred             hhHHHHHHHHHhcCccCcch------HhhhHHHHhhcccCCchHHHHHHHHHHHhhccCchHHH-----hhhhhhhccCC
Confidence            344444 4445544444443      24688899999888999999999999999999995443     56777777777


Q ss_pred             CCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHHhC
Q 015951          222 SSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDR  301 (397)
Q Consensus       222 s~~~~v~~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klr~kA~~lL~~L~~~~l~~~~~~~~~~l~~~  301 (397)
                      +.++.+|..|+...+++ |- +...     ..-..+|..+++++  +..+|+.|+..+..|-.        ...+...+.
T Consensus        97 d~np~iR~lAlrtm~~l-~v-~~i~-----ey~~~Pl~~~l~d~--~~yvRktaa~~vakl~~--------~~~~~~~~~  159 (734)
T KOG1061|consen   97 DPNPLIRALALRTMGCL-RV-DKIT-----EYLCDPLLKCLKDD--DPYVRKTAAVCVAKLFD--------IDPDLVEDS  159 (734)
T ss_pred             CCCHHHHHHHhhceeeE-ee-hHHH-----HHHHHHHHHhccCC--ChhHHHHHHHHHHHhhc--------CChhhcccc
Confidence            77888999999988876 32 1111     22457888899886  56789999888888752        334557789


Q ss_pred             CcHHHHHHhccCCChHHHHHHHHHHHHHhcCC
Q 015951          302 FFLKSVVDLTASADLDLQEKALAAIKNLLQLR  333 (397)
Q Consensus       302 g~v~~Lv~lL~~~d~dv~E~aL~aL~~L~~~~  333 (397)
                      |++..|-+++...++.|.-.|+.+|..+....
T Consensus       160 gl~~~L~~ll~D~~p~VVAnAlaaL~eI~e~~  191 (734)
T KOG1061|consen  160 GLVDALKDLLSDSNPMVVANALAALSEIHESH  191 (734)
T ss_pred             chhHHHHHHhcCCCchHHHHHHHHHHHHHHhC
Confidence            99999999999889999999999999998764

>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis

Probab=94.62  E-value=2.2  Score=43.04  Aligned_cols=151  Identities=17%  Similarity=0.122  Sum_probs=108.5

Q ss_pred             CHHHHHHHHHHHHHHhcCChHHHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHHHhcC---cHHHH
Q 015951          182 DTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEA---GDLML  258 (397)
Q Consensus       182 ~~~ir~~Aa~vLg~~aqNNp~~Q~~vl~~g~lp~Ll~LL~s~~~~v~~kAl~ALS~LiR~~~~~~~~f~~~g---Gi~~L  258 (397)
                      ++++--.+-.+|..++.. +.+-..++....+-.+.+.+..++=++..-|...+..+...|+.....|+..+   =+...
T Consensus       136 ~~dial~~g~mlRec~k~-e~l~~~iL~~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~  214 (335)
T PF08569_consen  136 NPDIALNCGDMLRECIKH-ESLAKIILYSECFWKFFKYVQLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKY  214 (335)
T ss_dssp             STTTHHHHHHHHHHHTTS-HHHHHHHHTSGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHH
T ss_pred             CccccchHHHHHHHHHhh-HHHHHHHhCcHHHHHHHHHhcCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHH
Confidence            456666666777777764 44555677777777788888877778889999999998888888888888765   34577


Q ss_pred             HHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCC-cchhHHhCCcHHHHHHhccCCChHHHHHHHHHHHHHhcCChHHH
Q 015951          259 QDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKV-EPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLRTTEA  337 (397)
Q Consensus       259 ~~lL~s~~~d~klr~kA~~lL~~L~~~~l~~~~~~-~~~~l~~~g~v~~Lv~lL~~~d~dv~E~aL~aL~~L~~~~~~~r  337 (397)
                      ..+|.++  +.=+|+.++-+|+.|....   .+-. ...++.+..-++.++.+|++....+|-.|-....-++..+...+
T Consensus       215 ~~Ll~s~--NYvtkrqslkLL~ellldr---~n~~vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvFVANp~K~~  289 (335)
T PF08569_consen  215 NKLLESS--NYVTKRQSLKLLGELLLDR---SNFNVMTRYISSPENLKLMMNLLRDKSKNIQFEAFHVFKVFVANPNKPP  289 (335)
T ss_dssp             HHHCT-S--SHHHHHHHHHHHHHHHHSG---GGHHHHHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHH-SS-BH
T ss_pred             HHHccCC--CeEeehhhHHHHHHHHHch---hHHHHHHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHHHHHhCCCCCh
Confidence            7788886  4558999999999998631   1111 12344566778889999999999999999999999998876443


Q ss_pred             H
Q 015951          338 L  338 (397)
Q Consensus       338 ~  338 (397)
                      .
T Consensus       290 ~  290 (335)
T PF08569_consen  290 P  290 (335)
T ss_dssp             H
T ss_pred             H
Confidence            3

In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.

>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region

Probab=94.59  E-value=0.37  Score=39.74  Aligned_cols=93  Identities=12%  Similarity=-0.005  Sum_probs=64.9

Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCC
Q 015951          186 RKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNS  265 (397)
Q Consensus       186 r~~Aa~vLg~~aqNNp~~Q~~vl~~g~lp~Ll~LL~s~~~~v~~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~  265 (397)
                      |..+...|+.++...+..-...++ -.+|+++..+.+.+..||..|+.||.++++......-.+ =..-+..|.+++.++
T Consensus         3 R~ggli~Laa~ai~l~~~~~~~l~-~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~-f~~IF~~L~kl~~D~   80 (97)
T PF12755_consen    3 RKGGLIGLAAVAIALGKDISKYLD-EILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPY-FNEIFDALCKLSADP   80 (97)
T ss_pred             hhHHHHHHHHHHHHchHhHHHHHH-HHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHcCC
Confidence            556677777776655554333333 379999999999999999999999999998765432221 146788889988886


Q ss_pred             CccHHHHHHHHHHHHHHh
Q 015951          266 SFEIRLHRKAVSLVGDLA  283 (397)
Q Consensus       266 ~~d~klr~kA~~lL~~L~  283 (397)
                        +..+|. ++.+|-.|.
T Consensus        81 --d~~Vr~-~a~~Ld~ll   95 (97)
T PF12755_consen   81 --DENVRS-AAELLDRLL   95 (97)
T ss_pred             --chhHHH-HHHHHHHHh
Confidence              555555 556655554

>smart00288 VHS Domain present in VPS-27, Hrs and STAM

Probab=94.45  E-value=0.77  Score=39.89  Aligned_cols=106  Identities=17%  Similarity=0.180  Sum_probs=74.1

Q ss_pred             HHHHHHhcCCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhccCCCCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHH
Q 015951          112 IKELMEKLKTPSDAQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAW  191 (397)
Q Consensus       112 L~ea~~~~~~~~d~~lmk~~i~~L~~~~~s~e~k~~AL~~L~~Lve~iDnA~~~~~lGGl~~Li~lL~s~~~~ir~~Aa~  191 (397)
                      +.+|-+......|++.+.+..+.++.....+.+                         ++..|-.-|++++|.++..|..
T Consensus         5 i~kATs~~l~~~dw~~~l~icD~i~~~~~~~k~-------------------------a~r~l~krl~~~n~~v~l~AL~   59 (133)
T smart00288        5 IDKATSPSLLEEDWELILEICDLINSTPDGPKD-------------------------AVRLLKKRLNNKNPHVALLALT   59 (133)
T ss_pred             HHHHcCcCCCCcCHHHHHHHHHHHhCCCccHHH-------------------------HHHHHHHHHcCCCHHHHHHHHH
Confidence            344444333445666666666666554322221                         1222445678899999999999


Q ss_pred             HHHHHhcCC-hHHHHHHHHcCcHHHHHHhhcCCC--HHHHHHHHHHHHHHhcCC
Q 015951          192 ILGKASQNN-PLVQKQVLELGALSKLMKMVKSSF--VEEAVKALYTVSSLIRNN  242 (397)
Q Consensus       192 vLg~~aqNN-p~~Q~~vl~~g~lp~Ll~LL~s~~--~~v~~kAl~ALS~LiR~~  242 (397)
                      +|-.+++|. +.++..+...+.+..|.++++...  +.|+.+++..+.+-...+
T Consensus        60 lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~~~f  113 (133)
T smart00288       60 LLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYPLPLVKKRILELIQEWADAF  113 (133)
T ss_pred             HHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHH
Confidence            999999995 668888889999999999998754  348888888887765433

Unpublished observations. Domain of unknown function.

>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1

Probab=94.43  E-value=1.6  Score=39.65  Aligned_cols=89  Identities=20%  Similarity=0.163  Sum_probs=66.9

Q ss_pred             HHHHHHHHHHHhccCCCCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHHHHHHHH-cCc-HHHHHHhh
Q 015951          143 EDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLE-LGA-LSKLMKMV  220 (397)
Q Consensus       143 e~k~~AL~~L~~Lve~iDnA~~~~~lGGl~~Li~lL~s~~~~ir~~Aa~vLg~~aqNNp~~Q~~vl~-~g~-lp~Ll~LL  220 (397)
                      .-|.+++-.+-+++-...+--+    .-++.+..+|+++++.||..|..+|..+.+++.      ++ .|- +..++.++
T Consensus         3 ~vR~n~i~~l~DL~~r~~~~ve----~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~------ik~k~~l~~~~l~~l   72 (178)
T PF12717_consen    3 SVRNNAIIALGDLCIRYPNLVE----PYLPNLYKCLRDEDPLVRKTALLVLSHLILEDM------IKVKGQLFSRILKLL   72 (178)
T ss_pred             HHHHHHHHHHHHHHHhCcHHHH----hHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCc------eeehhhhhHHHHHHH
Confidence            4566666667666654432211    236777789999999999999999999997644      22 133 48888999


Q ss_pred             cCCCHHHHHHHHHHHHHHhcC
Q 015951          221 KSSFVEEAVKALYTVSSLIRN  241 (397)
Q Consensus       221 ~s~~~~v~~kAl~ALS~LiR~  241 (397)
                      .+++++++..|.+.+..+...
T Consensus        73 ~D~~~~Ir~~A~~~~~e~~~~   93 (178)
T PF12717_consen   73 VDENPEIRSLARSFFSELLKK   93 (178)
T ss_pred             cCCCHHHHHHHHHHHHHHHHh
Confidence            988999999999999998876

>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]

Probab=94.40  E-value=5.2  Score=38.74  Aligned_cols=189  Identities=17%  Similarity=0.135  Sum_probs=121.8

Q ss_pred             HHHHHHHHHHHhccCC-CCchhHHHh-cCCHHHHHH-hcC----------CCCHHHHH-HHHHHHHHHhcCChHHHHHHH
Q 015951          143 EDSQRALQELLILVEP-IDNANDLSK-LGGLSVLVG-QLN----------HPDTDIRK-ISAWILGKASQNNPLVQKQVL  208 (397)
Q Consensus       143 e~k~~AL~~L~~Lve~-iDnA~~~~~-lGGl~~Li~-lL~----------s~~~~ir~-~Aa~vLg~~aqNNp~~Q~~vl  208 (397)
                      +.++.||.+|..--+. .|.|-.+-. .|-...+++ .+.          ++...-|. +|..++..+ ..+|+.+..|+
T Consensus        39 p~rE~aL~ELskkre~~~dlA~~lW~s~g~~~~LLqEivaiYp~l~p~~l~~~qsnRVcnaL~LlQcv-ASHpdTr~~FL  117 (293)
T KOG3036|consen   39 PTREMALLELSKKREPFPDLAPMLWHSFGTMVALLQEIVAIYPSLSPPTLTPAQSNRVCNALALLQCV-ASHPDTRRAFL  117 (293)
T ss_pred             chHHHHHHHHHHhccCCccccHHHHHhcchHHHHHHHHHhcccccCCCCCCccccchHHHHHHHHHHH-hcCcchHHHHH
Confidence            5678888888887765 467765444 444444443 221          12233444 444445444 46899999999


Q ss_pred             HcCcHHHHHHhhcCC----C-HHHHHHHHHHHHHHhcCChhcHHHHH-hcCcHHHHHHhhcCCCccHHHHHHHHHHHHHH
Q 015951          209 ELGALSKLMKMVKSS----F-VEEAVKALYTVSSLIRNNLAGQEMFY-VEAGDLMLQDILGNSSFEIRLHRKAVSLVGDL  282 (397)
Q Consensus       209 ~~g~lp~Ll~LL~s~----~-~~v~~kAl~ALS~LiR~~~~~~~~f~-~~gGi~~L~~lL~s~~~d~klr~kA~~lL~~L  282 (397)
                      +...--.|-.+|...    + +-.|-.+++-|++++++.......|. ..+.++...+.+..++  .-.|.-|+|.+.-+
T Consensus       118 ~A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPlCLrime~GS--elSKtvA~fIlqKI  195 (293)
T KOG3036|consen  118 RAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPLCLRIMESGS--ELSKTVATFILQKI  195 (293)
T ss_pred             HccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHHHHHHHhccc--HHHHHHHHHHHHHH
Confidence            986543444444432    2 34699999999999998766666665 5688999999999873  34677888888877


Q ss_pred             hhchhccCCCC-------cchhHHh-CCcHHH-HHHhccCCChHHHHHHHHHHHHHhcCChHHHHHHH
Q 015951          283 AKCQLENMHKV-------EPPLFRD-RFFLKS-VVDLTASADLDLQEKALAAIKNLLQLRTTEALVLK  341 (397)
Q Consensus       283 ~~~~l~~~~~~-------~~~~l~~-~g~v~~-Lv~lL~~~d~dv~E~aL~aL~~L~~~~~~~r~~~~  341 (397)
                      ..      ++.       ..+.|.. .-++.. +.++.+.+++.+..+++++...|..... .|..++
T Consensus       196 ll------dD~GL~YiCqt~eRF~av~~~L~kmv~~l~~~ps~RllKhviRcYlrLsdnpr-ar~aL~  256 (293)
T KOG3036|consen  196 LL------DDVGLYYICQTAERFSAVALVLGKMVFQLVSMPSPRLLKHVIRCYLRLSDNPR-ARAALR  256 (293)
T ss_pred             hh------ccccHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCHH-HHHHHH
Confidence            64      221       1112211 112222 3445567899999999999999997754 666665

>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=94.34  E-value=0.91  Score=49.51  Aligned_cols=108  Identities=14%  Similarity=0.233  Sum_probs=73.4

Q ss_pred             CHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHHHHH----HHHc-----------------------------CcHHHH
Q 015951          170 GLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQ----VLEL-----------------------------GALSKL  216 (397)
Q Consensus       170 Gl~~Li~lL~s~~~~ir~~Aa~vLg~~aqNNp~~Q~~----vl~~-----------------------------g~lp~L  216 (397)
                      .+|.|.+=|..++|.|+..|..+|+.+|.-||+.--.    |++.                             ..+|+|
T Consensus       182 ~FprL~EkLeDpDp~V~SAAV~VICELArKnPknyL~LAP~ffkllttSsNNWmLIKiiKLF~aLtplEPRLgKKLiepl  261 (877)
T KOG1059|consen  182 CFPRLVEKLEDPDPSVVSAAVSVICELARKNPQNYLQLAPLFYKLLVTSSNNWVLIKLLKLFAALTPLEPRLGKKLIEPI  261 (877)
T ss_pred             hHHHHHHhccCCCchHHHHHHHHHHHHHhhCCcccccccHHHHHHHhccCCCeehHHHHHHHhhccccCchhhhhhhhHH
Confidence            5788888889999999999999999999887732110    1110                             233444


Q ss_pred             HHhhc-------------------------------------------CCCHHHHHHHHHHHHHHhcCChhcHHHHHhcC
Q 015951          217 MKMVK-------------------------------------------SSFVEEAVKALYTVSSLIRNNLAGQEMFYVEA  253 (397)
Q Consensus       217 l~LL~-------------------------------------------s~~~~v~~kAl~ALS~LiR~~~~~~~~f~~~g  253 (397)
                      ..++.                                           ++++.++--++.|+|-+...||.+.+++.   
T Consensus       262 t~li~sT~AmSLlYECvNTVVa~s~s~g~~d~~asiqLCvqKLr~fiedsDqNLKYlgLlam~KI~ktHp~~Vqa~k---  338 (877)
T KOG1059|consen  262 TELMESTVAMSLLYECVNTVVAVSMSSGMSDHSASIQLCVQKLRIFIEDSDQNLKYLGLLAMSKILKTHPKAVQAHK---  338 (877)
T ss_pred             HHHHHhhHHHHHHHHHHHHheeehhccCCCCcHHHHHHHHHHHhhhhhcCCccHHHHHHHHHHHHhhhCHHHHHHhH---
Confidence            43333                                           33334445566677777777776666553   


Q ss_pred             cHHHHHHhhcCCCccHHHHHHHHHHHHHHhh
Q 015951          254 GDLMLQDILGNSSFEIRLHRKAVSLVGDLAK  284 (397)
Q Consensus       254 Gi~~L~~lL~s~~~d~klr~kA~~lL~~L~~  284 (397)
                        ++++++|.+.  |..+|.+|.-+++-+++
T Consensus       339 --dlIlrcL~Dk--D~SIRlrALdLl~gmVs  365 (877)
T KOG1059|consen  339 --DLILRCLDDK--DESIRLRALDLLYGMVS  365 (877)
T ss_pred             --HHHHHHhccC--CchhHHHHHHHHHHHhh
Confidence              5678888876  56688899999999985

>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain

Probab=94.23  E-value=1.8  Score=42.62  Aligned_cols=109  Identities=17%  Similarity=0.126  Sum_probs=80.2

Q ss_pred             CCHHHHH-HhcCCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcH-
Q 015951          169 GGLSVLV-GQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQ-  246 (397)
Q Consensus       169 GGl~~Li-~lL~s~~~~ir~~Aa~vLg~~aqNNp~~Q~~vl~~g~lp~Ll~LL~s~~~~v~~kAl~ALS~LiR~~~~~~-  246 (397)
                      +.+..+| +.+.++++.||..|..|+|-.|-=+.+.-.     ..++.+.+.++.++.+++..|+.+|.-++.-|.... 
T Consensus        26 ~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~~~a~-----~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~~  100 (298)
T PF12719_consen   26 SLLDSLILPAVQSSDPAVRELALKCLGLCCLLDKELAK-----EHLPLFLQALQKDDEEVKITALKALFDLLLTHGIDIF  100 (298)
T ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhChHHHH-----HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchhc
Confidence            5566666 789999999999999999999976553222     247888888877788999999999998877665321 


Q ss_pred             HHHHh-------cCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhh
Q 015951          247 EMFYV-------EAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAK  284 (397)
Q Consensus       247 ~~f~~-------~gGi~~L~~lL~s~~~d~klr~kA~~lL~~L~~  284 (397)
                      .....       ..-...+...+.+.  +..++..|+--++-|..
T Consensus       101 ~~~~~~~~~~~~~~l~~~l~~~l~~~--~~~~~~~a~EGl~KLlL  143 (298)
T PF12719_consen  101 DSESDNDESVDSKSLLKILTKFLDSE--NPELQAIAVEGLCKLLL  143 (298)
T ss_pred             cchhccCccchHhHHHHHHHHHHhcC--CHHHHHHHHHHHHHHHh
Confidence            11111       22355667777766  55689999999998875

>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins

Probab=94.20  E-value=0.47  Score=48.93  Aligned_cols=109  Identities=16%  Similarity=0.119  Sum_probs=82.5

Q ss_pred             HHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHH-------------HHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHH
Q 015951          171 LSVLVGQLNHPDTDIRKISAWILGKASQNNPLV-------------QKQVLELGALSKLMKMVKSSFVEEAVKALYTVSS  237 (397)
Q Consensus       171 l~~Li~lL~s~~~~ir~~Aa~vLg~~aqNNp~~-------------Q~~vl~~g~lp~Ll~LL~s~~~~v~~kAl~ALS~  237 (397)
                      +..|+.+|.+  +++...||..++.+....+.+             ++.++.. .+|+|++-.++.+.+.+..-+.|||.
T Consensus       273 ~~~L~~lL~~--~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~-~~p~L~~~~~~~~~~~k~~yL~ALs~  349 (415)
T PF12460_consen  273 LDKLLELLSS--PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQ-VLPKLLEGFKEADDEIKSNYLTALSH  349 (415)
T ss_pred             HHHHHHHhCC--hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHH-HHHHHHHHHhhcChhhHHHHHHHHHH
Confidence            4456666665  888999999999999773433             4555543 79999999998887788999999999


Q ss_pred             HhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhh
Q 015951          238 LIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAK  284 (397)
Q Consensus       238 LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klr~kA~~lL~~L~~  284 (397)
                      ++++-|...-.=.-..-+++|.+.|..+  +..++.-+...+..+..
T Consensus       350 ll~~vP~~vl~~~l~~LlPLLlqsL~~~--~~~v~~s~L~tL~~~l~  394 (415)
T PF12460_consen  350 LLKNVPKSVLLPELPTLLPLLLQSLSLP--DADVLLSSLETLKMILE  394 (415)
T ss_pred             HHhhCCHHHHHHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHHHH
Confidence            9998775332222235788899999876  44588899999998886

MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].

>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]

Probab=94.17  E-value=2.6  Score=40.74  Aligned_cols=159  Identities=16%  Similarity=0.125  Sum_probs=107.8

Q ss_pred             HHHHHHHHHHHhhC---CCCCH---HHHHHHHHHHHhccCCCCchhHHHhcCCHHHHHHhcC-----CCCHHHHHHHHHH
Q 015951          124 DAQLIQIAIDDLNN---STLSL---EDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLN-----HPDTDIRKISAWI  192 (397)
Q Consensus       124 d~~lmk~~i~~L~~---~~~s~---e~k~~AL~~L~~Lve~iDnA~~~~~lGGl~~Li~lL~-----s~~~~ir~~Aa~v  192 (397)
                      ...+..+.+.++-.   +..++   ..-.+||--|+-.+...|....|.+..-=--+-.+|+     .+.+-+|-.+..+
T Consensus        69 ~~~LLqEivaiYp~l~p~~l~~~qsnRVcnaL~LlQcvASHpdTr~~FL~A~iPlylYpfL~Tt~~~r~fEyLRLtsLGV  148 (293)
T KOG3036|consen   69 MVALLQEIVAIYPSLSPPTLTPAQSNRVCNALALLQCVASHPDTRRAFLRAHIPLYLYPFLNTTSKSRPFEYLRLTSLGV  148 (293)
T ss_pred             HHHHHHHHHhcccccCCCCCCccccchHHHHHHHHHHHhcCcchHHHHHHccChhhhHHhhhccccCCchHHHhHHHHHH
Confidence            45666776666422   21221   2345788888888888999999998754333335653     3568899999999


Q ss_pred             HHHHhcCCh-HHHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChh------cHHHHHhcC-cHHHHH-Hhhc
Q 015951          193 LGKASQNNP-LVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLA------GQEMFYVEA-GDLMLQ-DILG  263 (397)
Q Consensus       193 Lg~~aqNNp-~~Q~~vl~~g~lp~Ll~LL~s~~~~v~~kAl~ALS~LiR~~~~------~~~~f~~~g-Gi~~L~-~lL~  263 (397)
                      ||.+++|.. ++-...+..+.+|..++.+..+++.-+.-|++-+.-++-+...      ..+.|..-+ -+.-++ ++.+
T Consensus       149 IgaLvk~dd~eVi~fLl~TeIVPlCLrime~GSelSKtvA~fIlqKIlldD~GL~YiCqt~eRF~av~~~L~kmv~~l~~  228 (293)
T KOG3036|consen  149 IGALVKNDDQEVIRFLLTTEIVPLCLRIMESGSELSKTVATFILQKILLDDVGLYYICQTAERFSAVALVLGKMVFQLVS  228 (293)
T ss_pred             HHHHHhcCcHHHHHHHHHhhhHHHHHHHHhcccHHHHHHHHHHHHHHhhccccHHHHHHhHHHHHHHHHHHHHHHHHHhc
Confidence            999999865 4556666789999999999999988888999999888766543      223343221 222222 2223


Q ss_pred             CCCccHHHHHHHHHHHHHHhh
Q 015951          264 NSSFEIRLHRKAVSLVGDLAK  284 (397)
Q Consensus       264 s~~~d~klr~kA~~lL~~L~~  284 (397)
                      .+  +.++-..++.+...|+.
T Consensus       229 ~p--s~RllKhviRcYlrLsd  247 (293)
T KOG3036|consen  229 MP--SPRLLKHVIRCYLRLSD  247 (293)
T ss_pred             CC--CHHHHHHHHHHHHHhcC
Confidence            33  56777777777777764

>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]

Probab=94.10  E-value=1.6  Score=43.88  Aligned_cols=171  Identities=15%  Similarity=0.136  Sum_probs=123.7

Q ss_pred             HHHHHHHHHHHhccCCCC-ch----hHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCcHHHH-
Q 015951          143 EDSQRALQELLILVEPID-NA----NDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKL-  216 (397)
Q Consensus       143 e~k~~AL~~L~~Lve~iD-nA----~~~~~lGGl~~Li~lL~s~~~~ir~~Aa~vLg~~aqNNp~~Q~~vl~~g~lp~L-  216 (397)
                      -.|.-++..+-.++|+-| |+    ...+..|-++.++.|+-.++.++-..|...|..++- .|..-+.+++...+..+ 
T Consensus        97 sVKiLackqigcilEdcDtnaVseillvvNaeilklildcIggeddeVAkAAiesikrial-fpaaleaiFeSellDdlh  175 (524)
T KOG4413|consen   97 SVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIGGEDDEVAKAAIESIKRIAL-FPAALEAIFESELLDDLH  175 (524)
T ss_pred             hhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHh-cHHHHHHhcccccCChHH
Confidence            357778888888899888 33    234456778888899999999999999999999985 57777888877766443 


Q ss_pred             -HHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcc
Q 015951          217 -MKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEP  295 (397)
Q Consensus       217 -l~LL~s~~~~v~~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klr~kA~~lL~~L~~~~l~~~~~~~~  295 (397)
                       ..+....++-+|...+.-|--+..-+|......-..|-+..|..=|+... |.-++..+.-+++.|+.      .+.-+
T Consensus       176 lrnlaakcndiaRvRVleLIieifSiSpesaneckkSGLldlLeaElkGte-DtLVianciElvteLae------teHgr  248 (524)
T KOG4413|consen  176 LRNLAAKCNDIARVRVLELIIEIFSISPESANECKKSGLLDLLEAELKGTE-DTLVIANCIELVTELAE------TEHGR  248 (524)
T ss_pred             HhHHHhhhhhHHHHHHHHHHHHHHhcCHHHHhHhhhhhHHHHHHHHhcCCc-ceeehhhHHHHHHHHHH------Hhhhh
Confidence             33333334445555555444444445666777777888888888888643 55688899999999985      23456


Q ss_pred             hhHHhCCcHHHHHHhccCCChHHHHH
Q 015951          296 PLFRDRFFLKSVVDLTASADLDLQEK  321 (397)
Q Consensus       296 ~~l~~~g~v~~Lv~lL~~~d~dv~E~  321 (397)
                      +++-+.|+++.+.+.+...|.+-.|+
T Consensus       249 eflaQeglIdlicnIIsGadsdPfek  274 (524)
T KOG4413|consen  249 EFLAQEGLIDLICNIISGADSDPFEK  274 (524)
T ss_pred             hhcchhhHHHHHHHHhhCCCCCcHHH
Confidence            77888999999998887665554444

>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing

Probab=94.09  E-value=1.7  Score=44.57  Aligned_cols=83  Identities=14%  Similarity=0.118  Sum_probs=68.8

Q ss_pred             CHHHHHHHHHHHHHHhcCChHHHHHHHHcCcHHHHHHhhc-CC---CHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHH
Q 015951          182 DTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVK-SS---FVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLM  257 (397)
Q Consensus       182 ~~~ir~~Aa~vLg~~aqNNp~~Q~~vl~~g~lp~Ll~LL~-s~---~~~v~~kAl~ALS~LiR~~~~~~~~f~~~gGi~~  257 (397)
                      -+.|=..|+.++.....|.|.+-..+.+.|.++.+++-+. ..   +.++-..--.+|++++= |..+.+.|.+.+-+..
T Consensus       122 G~~v~s~a~~ivs~~I~nePT~~~~l~e~Gl~~~~L~~i~~~~i~~s~e~l~~lP~~l~AicL-N~~Gl~~~~~~~~l~~  200 (379)
T PF06025_consen  122 GPSVFSLAINIVSDFIHNEPTSFSILQEAGLIDAFLDAITAKGILPSSEVLTSLPNVLSAICL-NNRGLEKVKSSNPLDK  200 (379)
T ss_pred             chHHHHHHHHHHHHHHhcCCchhHHHHHcCChHHHHHHHhccCCCCcHHHHHHHHHHHhHHhc-CHHHHHHHHhcChHHH
Confidence            4789999999999999999999999999999999999888 33   24555555566676665 4577899999999999


Q ss_pred             HHHhhcCC
Q 015951          258 LQDILGNS  265 (397)
Q Consensus       258 L~~lL~s~  265 (397)
                      +.+++.++
T Consensus       201 ~f~if~s~  208 (379)
T PF06025_consen  201 LFEIFTSP  208 (379)
T ss_pred             HHHHhCCH
Confidence            99998875

This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.

>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]

Probab=94.06  E-value=0.83  Score=45.62  Aligned_cols=169  Identities=15%  Similarity=0.139  Sum_probs=105.2

Q ss_pred             CCCCchhHHHhc-CCHHHHHHhcCC-CCHHHHHHHHHHHHHHhcCChH-HHHHHHHcCcHHHHHHhhcCCC--HHHHHHH
Q 015951          157 EPIDNANDLSKL-GGLSVLVGQLNH-PDTDIRKISAWILGKASQNNPL-VQKQVLELGALSKLMKMVKSSF--VEEAVKA  231 (397)
Q Consensus       157 e~iDnA~~~~~l-GGl~~Li~lL~s-~~~~ir~~Aa~vLg~~aqNNp~-~Q~~vl~~g~lp~Ll~LL~s~~--~~v~~kA  231 (397)
                      -+...|.++.++ ..+-.|+.+.+. ....|-...+.++.+++..-|+ .-...+-.|-+.+-++.|....  ++.-+.-
T Consensus       222 f~~~~aqdi~K~~dli~dli~iVk~~~keKV~Rlc~~Iv~n~~dK~pK~~I~~~lll~~~~k~vq~L~erkysDEel~~d  301 (432)
T COG5231         222 FSKECAQDIDKMDDLINDLIAIVKERAKEKVLRLCCGIVANVLDKSPKGYIFSPLLLNDISKCVQVLLERKYSDEELVID  301 (432)
T ss_pred             cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhHhhcchHHHHHHHHhcCCChHHHHHH
Confidence            345566666665 445666677655 4567777888888888864332 2222233344555566665321  2211111


Q ss_pred             HHHHH----------------------HHhcCCh---------hcHHHHHhc--CcHHHHHHhhcCCCccHHHHHHHHHH
Q 015951          232 LYTVS----------------------SLIRNNL---------AGQEMFYVE--AGDLMLQDILGNSSFEIRLHRKAVSL  278 (397)
Q Consensus       232 l~ALS----------------------~LiR~~~---------~~~~~f~~~--gGi~~L~~lL~s~~~d~klr~kA~~l  278 (397)
                      +.-|-                      .+..-+|         .+.+.|.+.  .-+..|.+++++..++. ...-|+.=
T Consensus       302 i~~i~s~l~~~~k~l~~fD~Y~~ELdsg~l~wSp~H~~~dFWs~N~d~l~kdny~i~k~L~~~lq~n~~nt-~i~vAc~D  380 (432)
T COG5231         302 IERIRSRLVQNTKKLCIFDNYLNELDSGRLEWSPYHHKKDFWSTNLDMLIKDNYEIVKVLKKYLQSNNPNT-WICVACSD  380 (432)
T ss_pred             HHHHHHHHHhhhhhhhHHHHHHHHHhhCcccCCCcccccCchhhhHHHHhhhhHHHHHHHHHHHhcCCCCc-eEeeeHhh
Confidence            11111                      1111122         255666653  36778888888764442 23346666


Q ss_pred             HHHHhhchhccCCCCcchhHHhCCcHHHHHHhccCCChHHHHHHHHHHHHHhc
Q 015951          279 VGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQ  331 (397)
Q Consensus       279 L~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~dv~E~aL~aL~~L~~  331 (397)
                      |..+..     ..|+.+..+.+.|+-+.++++++++|++++-.|+.|+..+..
T Consensus       381 i~~~Vr-----~~PE~~~vl~Kyg~k~~im~L~nh~d~~VkfeAl~a~q~~i~  428 (432)
T COG5231         381 IFQLVR-----ASPEINAVLSKYGVKEIIMNLINHDDDDVKFEALQALQTCIS  428 (432)
T ss_pred             HHHHHH-----hCchHHHHHHHhhhHHHHHHHhcCCCchhhHHHHHHHHHHHh
Confidence            666664     578899999999999999999999999999999999998875

>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []

Probab=93.88  E-value=0.18  Score=45.57  Aligned_cols=104  Identities=22%  Similarity=0.282  Sum_probs=72.6

Q ss_pred             HHHHhhCCCCCHHHHHHHHHHHHhcc--CCCCchhHHHhcCCHHHHHHhcCC---------CCHHHHHHHHHHHHHHhcC
Q 015951          131 AIDDLNNSTLSLEDSQRALQELLILV--EPIDNANDLSKLGGLSVLVGQLNH---------PDTDIRKISAWILGKASQN  199 (397)
Q Consensus       131 ~i~~L~~~~~s~e~k~~AL~~L~~Lv--e~iDnA~~~~~lGGl~~Li~lL~s---------~~~~ir~~Aa~vLg~~aqN  199 (397)
                      .++.+.+...+.    ..|..|+-.+  .+++....|+..||+..|+.+|..         .+..+...+..|+-+++ |
T Consensus        71 ~i~~L~~~~~~~----~~L~~L~v~Lrt~~~~Wv~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal~-n  145 (187)
T PF06371_consen   71 YIKKLKSRPSTS----KILKSLRVSLRTNPISWVQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKALM-N  145 (187)
T ss_dssp             HHHHHTTT--HH----HHHHHHHHHHHHS-HHHHHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHHT-S
T ss_pred             HHHHHHccCccH----HHHHHHHHHhccCCchHHHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHH-c
Confidence            445554443222    3344444433  456778899999999999988753         34578999999999988 5


Q ss_pred             ChHHHHHHHH-cCcHHHHHHhhcCCCHHHHHHHHHHHHHHh
Q 015951          200 NPLVQKQVLE-LGALSKLMKMVKSSFVEEAVKALYTVSSLI  239 (397)
Q Consensus       200 Np~~Q~~vl~-~g~lp~Ll~LL~s~~~~v~~kAl~ALS~Li  239 (397)
                      ++.-...++. .+++..|+..|.+.+..++.-++.-|+.++
T Consensus       146 ~~~G~~~v~~~~~~v~~i~~~L~s~~~~~r~~~leiL~~lc  186 (187)
T PF06371_consen  146 TKYGLEAVLSHPDSVNLIALSLDSPNIKTRKLALEILAALC  186 (187)
T ss_dssp             SHHHHHHHHCSSSHHHHHHHT--TTSHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHcCcHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Confidence            6665666664 688999999999988999999988888775

Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.

>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=93.79  E-value=6  Score=43.85  Aligned_cols=184  Identities=16%  Similarity=0.115  Sum_probs=107.3

Q ss_pred             HHHHHHHHHHHHhccCCCCchhHHHhcCCH---------------HHHHHhcCCCCHHHHHHHHHHHHHHhcCChHHHHH
Q 015951          142 LEDSQRALQELLILVEPIDNANDLSKLGGL---------------SVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQ  206 (397)
Q Consensus       142 ~e~k~~AL~~L~~Lve~iDnA~~~~~lGGl---------------~~Li~lL~s~~~~ir~~Aa~vLg~~aqNNp~~Q~~  206 (397)
                      ..-++-|...|..++-+-||=-..+.+.++               ..+++||+.+++.||..|...+-.++..+- ++  
T Consensus       308 ~~LrvlainiLgkFL~n~d~NirYvaLn~L~r~V~~d~~avqrHr~tIleCL~DpD~SIkrralELs~~lvn~~N-v~--  384 (866)
T KOG1062|consen  308 SGLRVLAINILGKFLLNRDNNIRYVALNMLLRVVQQDPTAVQRHRSTILECLKDPDVSIKRRALELSYALVNESN-VR--  384 (866)
T ss_pred             chHHHHHHHHHHHHhcCCccceeeeehhhHHhhhcCCcHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhcccc-HH--
Confidence            355666777777777666654333433333               356789999999999999999998884321 22  


Q ss_pred             HHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHHH--------------hcCcHHHHHHhhcCC-------
Q 015951          207 VLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFY--------------VEAGDLMLQDILGNS-------  265 (397)
Q Consensus       207 vl~~g~lp~Ll~LL~s~~~~v~~kAl~ALS~LiR~~~~~~~~f~--------------~~gGi~~L~~lL~s~-------  265 (397)
                          ..+..|+..|.+.++..+....+-|.-++..|.|....|+              ....+.-+++++.+.       
T Consensus       385 ----~mv~eLl~fL~~~d~~~k~~~as~I~~laEkfaP~k~W~idtml~Vl~~aG~~V~~dv~~nll~LIa~~~~e~~~y  460 (866)
T KOG1062|consen  385 ----VMVKELLEFLESSDEDFKADIASKIAELAEKFAPDKRWHIDTMLKVLKTAGDFVNDDVVNNLLRLIANAFQELHEY  460 (866)
T ss_pred             ----HHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHhcccccchhhHHHHHHHHhcCCcchhhH
Confidence                2456788888887778888888888888777766544442              122445555555432       


Q ss_pred             ----------------CccHHHHHHHHHHHHHHhhchhccCCCCcchhHHhCCcHHHHHHhccCC--ChHHHHHHHHHHH
Q 015951          266 ----------------SFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASA--DLDLQEKALAAIK  327 (397)
Q Consensus       266 ----------------~~d~klr~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~--d~dv~E~aL~aL~  327 (397)
                                      -....+..-|.|+|.---.--+...+.+....+.+..++..+-+++.+.  +..++--|+.||.
T Consensus       461 ~~~rLy~a~~~~~~~~is~e~l~qVa~W~IGEYGdlll~~~~~~~p~~vtesdivd~l~~v~~~~~s~~~tk~yal~Al~  540 (866)
T KOG1062|consen  461 AVLRLYLALSEDTLLDISQEPLLQVASWCIGEYGDLLLDGANEEEPIKVTESDIVDKLEKVLMSHSSDSTTKGYALTALL  540 (866)
T ss_pred             HHHHHHHHHhhhhhhhhhhhhHHHHHHHHhhhhhHHhhcCccccCCCcCCHHHHHHHHHHHHHhccchHHHHHHHHHHHH
Confidence                            1122344445555542210000011112222233445666666666543  5667777777777


Q ss_pred             HHhcC
Q 015951          328 NLLQL  332 (397)
Q Consensus       328 ~L~~~  332 (397)
                      .|..-
T Consensus       541 KLSsr  545 (866)
T KOG1062|consen  541 KLSSR  545 (866)
T ss_pred             HHHhh
Confidence            76643

>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting)

Probab=93.69  E-value=1.2  Score=39.34  Aligned_cols=73  Identities=14%  Similarity=0.149  Sum_probs=59.2

Q ss_pred             CHHHHHHhcCCCCHHHHHHHHHHHHHHhcCC-hHHHHHHHHcCcHHHHHHhhcC-CCHHHHHHHHHHHHHHhcCC
Q 015951          170 GLSVLVGQLNHPDTDIRKISAWILGKASQNN-PLVQKQVLELGALSKLMKMVKS-SFVEEAVKALYTVSSLIRNN  242 (397)
Q Consensus       170 Gl~~Li~lL~s~~~~ir~~Aa~vLg~~aqNN-p~~Q~~vl~~g~lp~Ll~LL~s-~~~~v~~kAl~ALS~LiR~~  242 (397)
                      ++..|..-|++.++.++..|..+|-.+++|. +..+..+...+.+..|+++++. .+..|+.+++..|-+-...+
T Consensus        42 a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f  116 (142)
T cd03569          42 AMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWALAF  116 (142)
T ss_pred             HHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHHHh
Confidence            3444556678899999999999999999995 6688889999999999999985 34678989888887765443

The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.

>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []

Probab=93.50  E-value=0.61  Score=48.78  Aligned_cols=125  Identities=18%  Similarity=0.125  Sum_probs=93.0

Q ss_pred             HHHHHHHhcCChhcHHHHHhcCcHHHHHHhh--------cCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHHhCCc
Q 015951          232 LYTVSSLIRNNLAGQEMFYVEAGDLMLQDIL--------GNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFF  303 (397)
Q Consensus       232 l~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL--------~s~~~d~klr~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~  303 (397)
                      |-+|--+.|+ +.+...++...|+..|..+-        .....+..+...|..+|+|++..     ++..+..+.+.|+
T Consensus         2 L~~LRiLsRd-~~~~~~l~~~~~l~~L~~~a~l~~~~~~~~~~~~~~v~~EALKCL~N~lf~-----s~~aR~~~~~~~~   75 (446)
T PF10165_consen    2 LETLRILSRD-PTGLDPLFTEEGLSTLLKHAGLSESDEDEFESPDPDVSREALKCLCNALFL-----SPSARQIFVDLGL   75 (446)
T ss_pred             HHHHHHHccC-cccchhhccHHHHHHHHHhcCCcccccccccCCChHHHHHHHHHHHHHHhC-----CHHHHHHHHHcCc
Confidence            3445555554 44566666667777777665        12224677999999999999973     6788899999999


Q ss_pred             HHHHHHhccCC-----ChHHHHHHHHHHHHHhcCChHHHHHHHhc-CChHHHHHHHHHHhHHhhh
Q 015951          304 LKSVVDLTASA-----DLDLQEKALAAIKNLLQLRTTEALVLKDF-CGLDTALERLRQQLQEVML  362 (397)
Q Consensus       304 v~~Lv~lL~~~-----d~dv~E~aL~aL~~L~~~~~~~r~~~~~~-~gL~~~L~~Lr~~~~~l~~  362 (397)
                      .+.++..|+..     +.++.--.++.|.=+.......+..+.+. +|++.+.+.|..++.....
T Consensus        76 ~~~l~~~Lk~~~~~~~~~d~~Fl~~RLLFLlTa~~~~~~~~L~~e~~~~~~l~~~L~~~l~~~~~  140 (446)
T PF10165_consen   76 AEKLCERLKNYSDSSQPSDVEFLDSRLLFLLTALRPDDRKKLIEEHHGVELLTEALERHLKVKSK  140 (446)
T ss_pred             HHHHHHHHHcccccCCChhHHHHHHHHHHHHhcCChhHHHHHHHHhhhHHHHHHHHHHHHhcccc
Confidence            99999999876     67888888888877777777778777655 6677788888888776543

It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.

>PF13251 DUF4042: Domain of unknown function (DUF4042)

Probab=93.48  E-value=1.2  Score=41.12  Aligned_cols=142  Identities=14%  Similarity=0.077  Sum_probs=87.3

Q ss_pred             HHHHHHHHHHHHHhcC-ChHHH----HHHH------HcCcHHHHHHh-hcCCCHHHHHHHHHHHHHHhcCChhcHHHHHh
Q 015951          184 DIRKISAWILGKASQN-NPLVQ----KQVL------ELGALSKLMKM-VKSSFVEEAVKALYTVSSLIRNNLAGQEMFYV  251 (397)
Q Consensus       184 ~ir~~Aa~vLg~~aqN-Np~~Q----~~vl------~~g~lp~Ll~L-L~s~~~~v~~kAl~ALS~LiR~~~~~~~~f~~  251 (397)
                      .||..|..+|++++++ +++.=    -.++      ..+.-+.|+.+ +.+.+..+|..|+.+++.|+.+..+....--+
T Consensus         1 kvR~~Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae~   80 (182)
T PF13251_consen    1 KVRQAALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCILKDPSPKVRAAAASALAALLEGSKPFLAQAEE   80 (182)
T ss_pred             ChhHHHHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHHcCCchhHHHHHHHHHHHHHHccHHHHHHHHh
Confidence            3799999999999998 33211    0111      11234445544 44556789999999999999886442222211


Q ss_pred             cC-------------------cHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHHhCCcHHHH----H
Q 015951          252 EA-------------------GDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSV----V  308 (397)
Q Consensus       252 ~g-------------------Gi~~L~~lL~s~~~d~klr~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~L----v  308 (397)
                      ..                   -...|...|...+ +..+......++..|+..   .......     .|++..+    -
T Consensus        81 ~~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~-~~~~l~q~lK~la~Lv~~---tPY~rL~-----~~ll~~~v~~v~  151 (182)
T PF13251_consen   81 SKGPSGSFTSLSSTLASMIMELHRGLLLALQAEK-SPPVLTQLLKCLAVLVQA---TPYHRLP-----PGLLTEVVTQVR  151 (182)
T ss_pred             cCCCCCCcccHHHHHHHHHHHHHHHHHHHHhccc-ccHHHHHHHHHHHHHHcc---CChhhcC-----HhHHHHHHHHHH
Confidence            11                   2234555566543 334666777777777752   1111222     3444444    4


Q ss_pred             HhccCCChHHHHHHHHHHHHHhcCCh
Q 015951          309 DLTASADLDLQEKALAAIKNLLQLRT  334 (397)
Q Consensus       309 ~lL~~~d~dv~E~aL~aL~~L~~~~~  334 (397)
                      .++.+.|++++..++.++..+.+..+
T Consensus       152 ~~l~~~d~~v~v~~l~~~~~l~s~~~  177 (182)
T PF13251_consen  152 PLLRHRDPNVRVAALSCLGALLSVQP  177 (182)
T ss_pred             HHHhcCCCcHHHHHHHHHHHHHcCCC
Confidence            46677899999999999999987654

>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5

Probab=93.48  E-value=0.36  Score=37.80  Aligned_cols=63  Identities=17%  Similarity=0.310  Sum_probs=48.5

Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHcCcHHHHHHhhcCCC-HHHHHHHHHHHHHHhcCChhcHHHHH
Q 015951          186 RKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSF-VEEAVKALYTVSSLIRNNLAGQEMFY  250 (397)
Q Consensus       186 r~~Aa~vLg~~aqNNp~~Q~~vl~~g~lp~Ll~LL~s~~-~~v~~kAl~ALS~LiR~~~~~~~~f~  250 (397)
                      ...|.|++|+++.. |.-...+.+.+.++.++++..+.+ -.+|--|.|+|+=+.+ ...+.+.+.
T Consensus         4 lKaaLWaighIgss-~~G~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~-T~~G~~~L~   67 (73)
T PF14668_consen    4 LKAALWAIGHIGSS-PLGIQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISS-TEEGAEILD   67 (73)
T ss_pred             HHHHHHHHHhHhcC-hHHHHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhC-CHHHHHHHH
Confidence            46899999999975 545555667899999999999765 5789999999997765 445444443

>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein)

Probab=93.13  E-value=1.4  Score=38.93  Aligned_cols=71  Identities=15%  Similarity=0.156  Sum_probs=58.5

Q ss_pred             HHHHhcCCCCHHHHHHHHHHHHHHhcCCh-HHHHHHHHcCcHHHHHHhhcC-CCHHHHHHHHHHHHHHhcCCh
Q 015951          173 VLVGQLNHPDTDIRKISAWILGKASQNNP-LVQKQVLELGALSKLMKMVKS-SFVEEAVKALYTVSSLIRNNL  243 (397)
Q Consensus       173 ~Li~lL~s~~~~ir~~Aa~vLg~~aqNNp-~~Q~~vl~~g~lp~Ll~LL~s-~~~~v~~kAl~ALS~LiR~~~  243 (397)
                      .|..=|.+.++.++..|..+|-++++|+. .++..|.....+..|++++.. .+..|+.+.+.-|-.-...++
T Consensus        41 al~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~~~f~  113 (144)
T cd03568          41 AIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQWADEFK  113 (144)
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHhC
Confidence            34455678899999999999999999976 488888888999999999998 567899998888877655443

Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.

>KOG2734 consensus Uncharacterized conserved protein [Function unknown]

Probab=93.06  E-value=0.91  Score=47.01  Aligned_cols=130  Identities=19%  Similarity=0.205  Sum_probs=91.2

Q ss_pred             CChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhch-hccCC---CCcchhHHhCCcHHHHHHhccCC--
Q 015951          241 NNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQ-LENMH---KVEPPLFRDRFFLKSVVDLTASA--  314 (397)
Q Consensus       241 ~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klr~kA~~lL~~L~~~~-l~~~~---~~~~~~l~~~g~v~~Lv~lL~~~--  314 (397)
                      ..|.-..-|++.+|++.|+.+|...++|+  -..++.++..|.... +..+.   ....+.+++.+++..|++-+..-  
T Consensus       113 t~PdLYp~lveln~V~slL~LLgHeNtDI--~iavvdLLqELTD~Dv~~es~egAevLidaLvdg~vlaLLvqnveRLdE  190 (536)
T KOG2734|consen  113 TMPDLYPILVELNAVQSLLELLGHENTDI--AIAVVDLLQELTDEDVLYESEEGAEVLIDALVDGQVLALLVQNVERLDE  190 (536)
T ss_pred             cChHHHHHHHHhccHHHHHHHhcCCCchh--HHHHHHHHHHhhhhcccccccccHHHHHHHHHhccHHHHHHHHHHHhhh
Confidence            45777789999999999999999887774  557888888887542 11112   24677889999999999887543  


Q ss_pred             ----ChHHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHHHHHhHHhhhhhhhhhhHHhHHHH
Q 015951          315 ----DLDLQEKALAAIKNLLQLRTTEALVLKDFCGLDTALERLRQQLQEVMLEEDQRDYAMDVEAL  376 (397)
Q Consensus       315 ----d~dv~E~aL~aL~~L~~~~~~~r~~~~~~~gL~~~L~~Lr~~~~~l~~~e~~~~~~~~l~~~  376 (397)
                          +.+-...++..+.+++...+...+.+.+. |+.   .-|-.++..-.+++--+.||.++-++
T Consensus       191 svkeea~gv~~~L~vveNlv~~r~~~~~~~~e~-~ll---~WLL~rl~~k~~f~aNk~YasEiLai  252 (536)
T KOG2734|consen  191 SVKEEADGVHNTLAVVENLVEVRPAICTEIVEQ-GLL---SWLLKRLKGKAAFDANKQYASEILAI  252 (536)
T ss_pred             cchhhhhhhHHHHHHHHHHHhccHHHHHHHHHh-hHH---HHHHHHHhcccCcchhHHHHHHHHHH
Confidence                44566777888899998876655555534 552   22333345555677788899887444

>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=92.96  E-value=4.3  Score=44.78  Aligned_cols=154  Identities=17%  Similarity=0.144  Sum_probs=93.6

Q ss_pred             HHHHHHhcCCCCHHHHHHHHHHHhhCCCCCHH---------------HHHHHHHHHHhccCCCCc-hhHHHhcCCHHH-H
Q 015951          112 IKELMEKLKTPSDAQLIQIAIDDLNNSTLSLE---------------DSQRALQELLILVEPIDN-ANDLSKLGGLSV-L  174 (397)
Q Consensus       112 L~ea~~~~~~~~d~~lmk~~i~~L~~~~~s~e---------------~k~~AL~~L~~Lve~iDn-A~~~~~lGGl~~-L  174 (397)
                      +++++++=....-.+.||+.|..+-|++.-+.               +....|--.-++|...++ ...++.|=.+-- +
T Consensus        25 ik~~Lek~~~~~KIeamK~ii~~mlnGe~~p~Llm~IiRfvlps~~~elKKLly~ywE~vPKt~~dgkl~~EMILvcna~  104 (948)
T KOG1058|consen   25 IKEKLEKGDDEVKIEAMKKIIALMLNGEDLPSLLMTIIRFVLPSRNHELKKLLYYYWELVPKTDSDGKLLHEMILVCNAY  104 (948)
T ss_pred             HHHHHhcCChHHHHHHHHHHHHHHHcCCCchHHHHHHhheeeccCchHHHHHHHHHHHHccccCCCcccHHHHHHHHHHH
Confidence            45566542223345678888877777764332               222334444456665554 555665533322 2


Q ss_pred             HHhcCCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCc
Q 015951          175 VGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAG  254 (397)
Q Consensus       175 i~lL~s~~~~ir~~Aa~vLg~~aqNNp~~Q~~vl~~g~lp~Ll~LL~s~~~~v~~kAl~ALS~LiR~~~~~~~~f~~~gG  254 (397)
                      -.-|.|||+=||-...+.|+++=  .|+.     -...+|.+.+.|.+...=||+.|+.||.+|-+++..     .=-.+
T Consensus       105 RkDLQHPNEyiRG~TLRFLckLk--E~EL-----lepl~p~IracleHrhsYVRrNAilaifsIyk~~~~-----L~pDa  172 (948)
T KOG1058|consen  105 RKDLQHPNEYIRGSTLRFLCKLK--EPEL-----LEPLMPSIRACLEHRHSYVRRNAILAIFSIYKNFEH-----LIPDA  172 (948)
T ss_pred             hhhccCchHhhcchhhhhhhhcC--cHHH-----hhhhHHHHHHHHhCcchhhhhhhheeehhHHhhhhh-----hcCCh
Confidence            24688999999999999988773  3332     235688899999998888999999999998766321     11244


Q ss_pred             HHHHHHhhcCCCccHHHHHHHHHH
Q 015951          255 DLMLQDILGNSSFEIRLHRKAVSL  278 (397)
Q Consensus       255 i~~L~~lL~s~~~d~klr~kA~~l  278 (397)
                      -+++-+.|.... |+..+++|.-.
T Consensus       173 peLi~~fL~~e~-DpsCkRNAFi~  195 (948)
T KOG1058|consen  173 PELIESFLLTEQ-DPSCKRNAFLM  195 (948)
T ss_pred             HHHHHHHHHhcc-CchhHHHHHHH
Confidence            555555554332 33455555443

>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]

Probab=92.90  E-value=8.2  Score=37.69  Aligned_cols=29  Identities=28%  Similarity=0.350  Sum_probs=23.7

Q ss_pred             CHHHHHHhc--CCCCHHHHHHHHHHHHHHhc
Q 015951          170 GLSVLVGQL--NHPDTDIRKISAWILGKASQ  198 (397)
Q Consensus       170 Gl~~Li~lL--~s~~~~ir~~Aa~vLg~~aq  198 (397)
                      .++.++..|  .+..|-||-.|+.++|.+..
T Consensus        68 Av~~l~~vl~desq~pmvRhEAaealga~~~   98 (289)
T KOG0567|consen   68 AVPVLVEVLLDESQEPMVRHEAAEALGAIGD   98 (289)
T ss_pred             hhHHHHHHhcccccchHHHHHHHHHHHhhcc
Confidence            678888766  45678999999999999873

>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised

Probab=92.80  E-value=0.47  Score=45.51  Aligned_cols=54  Identities=17%  Similarity=0.241  Sum_probs=43.2

Q ss_pred             HHHHHhc-CCCCHHHHHHHHHHHHHHhcCChH-HHHHHHHcCcHHHHHHhhcCCCH
Q 015951          172 SVLVGQL-NHPDTDIRKISAWILGKASQNNPL-VQKQVLELGALSKLMKMVKSSFV  225 (397)
Q Consensus       172 ~~Li~lL-~s~~~~ir~~Aa~vLg~~aqNNp~-~Q~~vl~~g~lp~Ll~LL~s~~~  225 (397)
                      ..|+++| ...++-.|+-|.-+|.++|+.... ++....+.+.|..|+..+.+...
T Consensus       175 ~~L~r~l~~~e~~v~REfAvvlL~~La~~~~~~~r~iA~q~~~i~~Li~FiE~a~~  230 (257)
T PF12031_consen  175 HTLVRLLGMREDQVCREFAVVLLSNLAQGDEAAARAIAMQKPCISHLIAFIEDAEQ  230 (257)
T ss_pred             HHHHHHhccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhchHHHHHHHHHHHHH
Confidence            3456666 457899999999999999997665 45667788999999999987543

This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.

>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle

Probab=92.77  E-value=0.46  Score=42.49  Aligned_cols=147  Identities=13%  Similarity=0.157  Sum_probs=96.6

Q ss_pred             CHHHHHHhcC--CCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHH
Q 015951          170 GLSVLVGQLN--HPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQE  247 (397)
Q Consensus       170 Gl~~Li~lL~--s~~~~ir~~Aa~vLg~~aqNNp~~Q~~vl~~g~lp~Ll~LL~s~~~~v~~kAl~ALS~LiR~~~~~~~  247 (397)
                      .+..++..|.  ...+++|..|.-++...-   +..++.+.+. .-..+-.++.....+-...++.+++.+.-..|....
T Consensus         4 ~l~~lL~~L~~~~~~~~~r~~a~v~l~k~l---~~~~~~~~~~-~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~~dv~~   79 (157)
T PF11701_consen    4 ELDTLLTSLDMLRQPEEVRSHALVILSKLL---DAAREEFKEK-ISDFIESLLDEGEMDSLIIAFSALTALFPGPPDVGS   79 (157)
T ss_dssp             CCCHHHHHHHCTTTSCCHHHHHHHHHHHHH---HHHHHHHHHH-HHHHHHHHHCCHHCCHHHHHHHHHHHHCTTTHHHHH
T ss_pred             HHHHHHHHhcccCCCHhHHHHHHHHHHHHH---HHhHHHHHHH-HHHHHHHHHccccchhHHHHHHHHHHHhCCCHHHHH
Confidence            3456676654  578899999999999984   4455555442 233333444433334578899999999877776655


Q ss_pred             HHHh-cCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHHhCCcHHHHHHhccCC-ChH-HHHHHHH
Q 015951          248 MFYV-EAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASA-DLD-LQEKALA  324 (397)
Q Consensus       248 ~f~~-~gGi~~L~~lL~s~~~d~klr~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~-d~d-v~E~aL~  324 (397)
                      .++. .|-.+.+.........+..++..++.+++.=|.      +...+..+.++ +++.|-++.+.. |.. ++..|+-
T Consensus        80 ~l~~~eg~~~~l~~~~~~~~~~~~~~~~~lell~aAc~------d~~~r~~I~~~-~~~~L~~~~~~~~~~~~ir~~A~v  152 (157)
T PF11701_consen   80 ELFLSEGFLESLLPLASRKSKDRKVQKAALELLSAACI------DKSCRTFISKN-YVSWLKELYKNSKDDSEIRVLAAV  152 (157)
T ss_dssp             HHCCTTTHHHHHHHHHH-CTS-HHHHHHHHHHHHHHTT------SHHHHHCCHHH-CHHHHHHHTTTCC-HH-CHHHHHH
T ss_pred             HHHhhhhHHHHHHHHHhcccCCHHHHHHHHHHHHHHHc------cHHHHHHHHHH-HHHHHHHHHccccchHHHHHHHHH
Confidence            5554 555677777777333477899999999998774      44556555554 478888888644 444 6777765


Q ss_pred             HHH
Q 015951          325 AIK  327 (397)
Q Consensus       325 aL~  327 (397)
                      +|.
T Consensus       153 ~L~  155 (157)
T PF11701_consen  153 GLC  155 (157)
T ss_dssp             HHH
T ss_pred             HHh
Confidence            554

Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.

>KOG2956 consensus CLIP-associating protein [General function prediction only]

Probab=92.73  E-value=9.4  Score=40.03  Aligned_cols=190  Identities=15%  Similarity=0.094  Sum_probs=113.8

Q ss_pred             HHHHHHHHHHHhhCCCCCHHHHHHHHHHHHh-ccCCCCchhHHHhcCCHHHHHHhcCC-CCHHHHHHHHHHHHHHhcCCh
Q 015951          124 DAQLIQIAIDDLNNSTLSLEDSQRALQELLI-LVEPIDNANDLSKLGGLSVLVGQLNH-PDTDIRKISAWILGKASQNNP  201 (397)
Q Consensus       124 d~~lmk~~i~~L~~~~~s~e~k~~AL~~L~~-Lve~iDnA~~~~~lGGl~~Li~lL~s-~~~~ir~~Aa~vLg~~aqNNp  201 (397)
                      -..+++..+..+++.+. .+.+..|+.+|.. ++++--.-+.=+...-+..+++.|.. .++.+|..|.++|+.++.|-|
T Consensus       284 ~~~~v~~~l~~~~g~e~-a~~~k~alsel~~m~~e~sfsvWeq~f~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~  362 (516)
T KOG2956|consen  284 QSALVADLLKEISGSER-ASERKEALSELPKMLCEGSFSVWEQHFAEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQP  362 (516)
T ss_pred             hhHHHHHHHHhccCccc-hhHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhch
Confidence            45678888888887753 3667788876665 44553333332222234566677854 889999999999999998755


Q ss_pred             HHHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhc-CChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHH
Q 015951          202 LVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIR-NNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVG  280 (397)
Q Consensus       202 ~~Q~~vl~~g~lp~Ll~LL~s~~~~v~~kAl~ALS~LiR-~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klr~kA~~lL~  280 (397)
                      .--..-.+ =++.++++--.+..+++-..|.-+.+-++. +.|...        +..+..++.+.  |...-.-++..+.
T Consensus       363 ~~l~DstE-~ai~K~Leaa~ds~~~v~~~Aeed~~~~las~~P~~~--------I~~i~~~Ilt~--D~~~~~~~iKm~T  431 (516)
T KOG2956|consen  363 ARLFDSTE-IAICKVLEAAKDSQDEVMRVAEEDCLTTLASHLPLQC--------IVNISPLILTA--DEPRAVAVIKMLT  431 (516)
T ss_pred             HhhhchHH-HHHHHHHHHHhCCchhHHHHHHHHHHHHHHhhCchhH--------HHHHhhHHhcC--cchHHHHHHHHHH
Confidence            32222122 267777777777666664444444443333 344322        22334444442  2223333444555


Q ss_pred             HHhhchhccCCCCcchhHH--hCCcHHHHHHhccCCChHHHHHHHHHHHHHhcC
Q 015951          281 DLAKCQLENMHKVEPPLFR--DRFFLKSVVDLTASADLDLQEKALAAIKNLLQL  332 (397)
Q Consensus       281 ~L~~~~l~~~~~~~~~~l~--~~g~v~~Lv~lL~~~d~dv~E~aL~aL~~L~~~  332 (397)
                      -|+..       -..+.+.  =..+.+.+++.-.+....||..|..||..+...
T Consensus       432 kl~e~-------l~~EeL~~ll~diaP~~iqay~S~SS~VRKtaVfCLVamv~~  478 (516)
T KOG2956|consen  432 KLFER-------LSAEELLNLLPDIAPCVIQAYDSTSSTVRKTAVFCLVAMVNR  478 (516)
T ss_pred             HHHhh-------cCHHHHHHhhhhhhhHHHHHhcCchHHhhhhHHHhHHHHHHH
Confidence            66532       1111121  135677788888888899999999999988853

>KOG0212 consensus Uncharacterized conserved protein [Function unknown]

Probab=92.68  E-value=4.3  Score=43.42  Aligned_cols=103  Identities=17%  Similarity=0.113  Sum_probs=81.5

Q ss_pred             HHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChh-cHHHH
Q 015951          171 LSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLA-GQEMF  249 (397)
Q Consensus       171 l~~Li~lL~s~~~~ir~~Aa~vLg~~aqNNp~~Q~~vl~~g~lp~Ll~LL~s~~~~v~~kAl~ALS~LiR~~~~-~~~~f  249 (397)
                      +..+..+|.++..+-|..+..-|..+-.+.| .|-.+.....++.|++-|++.+++|-.+++.-+++++.++.. +.   
T Consensus       338 i~vl~~~l~~~~~~tri~~L~Wi~~l~~~~p-~ql~~h~~~if~tLL~tLsd~sd~vvl~~L~lla~i~~s~~~~~~---  413 (675)
T KOG0212|consen  338 IEVLTKYLSDDREETRIAVLNWIILLYHKAP-GQLLVHNDSIFLTLLKTLSDRSDEVVLLALSLLASICSSSNSPNL---  413 (675)
T ss_pred             HHHHHHHhhcchHHHHHHHHHHHHHHHhhCc-chhhhhccHHHHHHHHhhcCchhHHHHHHHHHHHHHhcCcccccH---
Confidence            5566688999999999999999999987666 777777888999999999999999999999999999986432 23   


Q ss_pred             HhcCcHHHHHHhh---cCCCccHHHHHHHHHHHHHHhh
Q 015951          250 YVEAGDLMLQDIL---GNSSFEIRLHRKAVSLVGDLAK  284 (397)
Q Consensus       250 ~~~gGi~~L~~lL---~s~~~d~klr~kA~~lL~~L~~  284 (397)
                           .+.+..+|   ..+  ..-+..++.+.+..||.
T Consensus       414 -----~~fl~sLL~~f~e~--~~~l~~Rg~lIIRqlC~  444 (675)
T KOG0212|consen  414 -----RKFLLSLLEMFKED--TKLLEVRGNLIIRQLCL  444 (675)
T ss_pred             -----HHHHHHHHHHHhhh--hHHHHhhhhHHHHHHHH
Confidence                 33344443   333  34478899999999985

>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins

Probab=92.65  E-value=1.5  Score=38.68  Aligned_cols=72  Identities=15%  Similarity=0.153  Sum_probs=57.5

Q ss_pred             HHHHHHhcCCCCHHHHHHHHHHHHHHhcCC-hHHHHHHHHcCcHHHHHHhhcC------CCHHHHHHHHHHHHHHhcCC
Q 015951          171 LSVLVGQLNHPDTDIRKISAWILGKASQNN-PLVQKQVLELGALSKLMKMVKS------SFVEEAVKALYTVSSLIRNN  242 (397)
Q Consensus       171 l~~Li~lL~s~~~~ir~~Aa~vLg~~aqNN-p~~Q~~vl~~g~lp~Ll~LL~s------~~~~v~~kAl~ALS~LiR~~  242 (397)
                      +..+..-|+++++.++..|..+|-++++|. +.++..|...+.+..|+++++.      .+..|+.+.+.-|-.-...+
T Consensus        40 ~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~f  118 (139)
T cd03567          40 VRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTKIIELLYSWTLEL  118 (139)
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHHHh
Confidence            344556678999999999999999999997 5688999999999999999963      34678888877666554433

The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.

>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=92.51  E-value=2  Score=46.94  Aligned_cols=130  Identities=20%  Similarity=0.215  Sum_probs=90.7

Q ss_pred             HHHHHHHHHHHHhccCCCCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCcHHHHHHhhc
Q 015951          142 LEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVK  221 (397)
Q Consensus       142 ~e~k~~AL~~L~~Lve~iDnA~~~~~lGGl~~Li~lL~s~~~~ir~~Aa~vLg~~aqNNp~~Q~~vl~~g~lp~Ll~LL~  221 (397)
                      ++.-+.-+-.+-.-.++.|.-++|+. |-+.-++....+++..||.+.+.+|+.+.-+|...-+.+.+ +...+++.-+.
T Consensus        59 ~dRIl~fla~fv~sl~q~d~e~DlV~-~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~eidd~vfn-~l~e~l~~Rl~  136 (892)
T KOG2025|consen   59 PDRILSFLARFVESLPQLDKEEDLVA-GTFYHLLRGTESKDKKVRFRVLQILALLSDENAEIDDDVFN-KLNEKLLIRLK  136 (892)
T ss_pred             HHHHHHHHHHHHHhhhccCchhhHHH-HHHHHHHhcccCcchhHHHHHHHHHHHHhccccccCHHHHH-HHHHHHHHHHh
Confidence            34333445555555668888888764 67778888889999999999999999999877655555554 56677776666


Q ss_pred             CCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHH
Q 015951          222 SSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLV  279 (397)
Q Consensus       222 s~~~~v~~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klr~kA~~lL  279 (397)
                      +-.+.||..|+.|||-+= +.|. -.   +......+..+++.+. +..+|+-|+..|
T Consensus       137 Drep~VRiqAv~aLsrlQ-~d~~-de---e~~v~n~l~~liqnDp-S~EVRRaaLsnI  188 (892)
T KOG2025|consen  137 DREPNVRIQAVLALSRLQ-GDPK-DE---ECPVVNLLKDLIQNDP-SDEVRRAALSNI  188 (892)
T ss_pred             ccCchHHHHHHHHHHHHh-cCCC-CC---cccHHHHHHHHHhcCC-cHHHHHHHHHhh
Confidence            667789999999999874 2222 11   1345667777887653 455787665544

>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=92.31  E-value=4  Score=44.74  Aligned_cols=94  Identities=21%  Similarity=0.197  Sum_probs=76.4

Q ss_pred             HHHHHHHHHhccCCCCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCcHHHHHHhhcCCC
Q 015951          145 SQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSF  224 (397)
Q Consensus       145 k~~AL~~L~~Lve~iDnA~~~~~lGGl~~Li~lL~s~~~~ir~~Aa~vLg~~aqNNp~~Q~~vl~~g~lp~Ll~LL~s~~  224 (397)
                      --.||.-|.-++. .|-|+|+.     +-++.+|+|+-|=+|..|.-++-.++---|+.-.     -++|+|..-|.+++
T Consensus       126 ~giAL~GLS~fvT-pdLARDLa-----~Dv~tLL~sskpYvRKkAIl~lykvFLkYPeAlr-----~~FprL~EkLeDpD  194 (877)
T KOG1059|consen  126 VGLALSGLSCIVT-PDLARDLA-----DDVFTLLNSSKPYVRKKAILLLYKVFLKYPEALR-----PCFPRLVEKLEDPD  194 (877)
T ss_pred             hhheecccccccC-chhhHHHH-----HHHHHHHhcCchHHHHHHHHHHHHHHHhhhHhHh-----hhHHHHHHhccCCC
Confidence            3357777776665 78888876     4678899999999999999999988865554322     47999999999999


Q ss_pred             HHHHHHHHHHHHHHhcCChhcHHHH
Q 015951          225 VEEAVKALYTVSSLIRNNLAGQEMF  249 (397)
Q Consensus       225 ~~v~~kAl~ALS~LiR~~~~~~~~f  249 (397)
                      +.|+..|+.-|+-+.|.+|.+.-.+
T Consensus       195 p~V~SAAV~VICELArKnPknyL~L  219 (877)
T KOG1059|consen  195 PSVVSAAVSVICELARKNPQNYLQL  219 (877)
T ss_pred             chHHHHHHHHHHHHHhhCCcccccc
Confidence            9999999999999999999876543

>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]

Probab=91.46  E-value=4.5  Score=45.40  Aligned_cols=172  Identities=16%  Similarity=0.218  Sum_probs=112.0

Q ss_pred             HHHHHHHHHHHHhccCCCCchhHHHh--cCCHHHHHHh-cCCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCcHHHHHH
Q 015951          142 LEDSQRALQELLILVEPIDNANDLSK--LGGLSVLVGQ-LNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMK  218 (397)
Q Consensus       142 ~e~k~~AL~~L~~Lve~iDnA~~~~~--lGGl~~Li~l-L~s~~~~ir~~Aa~vLg~~aqNNp~~Q~~vl~~g~lp~Ll~  218 (397)
                      -.+|..||+.+-..+++--  ....+  .|-+-.++.. +...|..+...|+.+|..++......-.. +-.+.+|.|+.
T Consensus       267 WK~R~Eale~l~~~l~e~~--~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~~~~-~~~~v~p~lld  343 (815)
T KOG1820|consen  267 WKDRKEALEELVAILEEAK--KEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPLFRK-YAKNVFPSLLD  343 (815)
T ss_pred             hHHHHHHHHHHHHHHhccc--cccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchhhHH-HHHhhcchHHH
Confidence            3577788888887766533  11111  1233444443 36688999999999999999876554222 22368899999


Q ss_pred             hhcCCCHHHH---HHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcc
Q 015951          219 MVKSSFVEEA---VKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEP  295 (397)
Q Consensus       219 LL~s~~~~v~---~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klr~kA~~lL~~L~~~~l~~~~~~~~  295 (397)
                      -+......++   ++++-++++..   +.       ..-.+.+...++++  .++++.....++......    .++...
T Consensus       344 ~lkekk~~l~d~l~~~~d~~~ns~---~l-------~~~~~~I~e~lk~k--np~~k~~~~~~l~r~~~~----~~~~~~  407 (815)
T KOG1820|consen  344 RLKEKKSELRDALLKALDAILNST---PL-------SKMSEAILEALKGK--NPQIKGECLLLLDRKLRK----LGPKTV  407 (815)
T ss_pred             HhhhccHHHHHHHHHHHHHHHhcc---cH-------HHHHHHHHHHhcCC--ChhhHHHHHHHHHHHHhh----cCCcCc
Confidence            9887665554   56666666621   11       11234556677776  456777766666665542    233333


Q ss_pred             hhHHhCCcHHHHHHhccCCChHHHHHHHHHHHHHhcC
Q 015951          296 PLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQL  332 (397)
Q Consensus       296 ~~l~~~g~v~~Lv~lL~~~d~dv~E~aL~aL~~L~~~  332 (397)
                      +.-.-.++++.++.+.+..+.+||..|+.++..+...
T Consensus       408 ~~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~k~  444 (815)
T KOG1820|consen  408 EKETVKTLVPHLIKHINDTDKDVRKAALEAVAAVMKV  444 (815)
T ss_pred             chhhHHHHhHHHhhhccCCcHHHHHHHHHHHHHHHHH
Confidence            3334467888888888888999999999999988854

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=91.36  E-value=6.8  Score=45.34  Aligned_cols=199  Identities=18%  Similarity=0.150  Sum_probs=117.8

Q ss_pred             HHHHHHHHhhCCCCCHHHHHHHHHHHHhccCCCCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcC----ChH
Q 015951          127 LIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQN----NPL  202 (397)
Q Consensus       127 lmk~~i~~L~~~~~s~e~k~~AL~~L~~Lve~iDnA~~~~~lGGl~~Li~lL~s~~~~ir~~Aa~vLg~~aqN----Np~  202 (397)
                      ++-.+|+-++.    .+.|..||+-|..|...+|--..+.  -.+|-++.++..+.+.||+.|...|..+..+    +|.
T Consensus       426 ~lts~IR~lk~----~~tK~~ALeLl~~lS~~i~de~~LD--RVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~  499 (1431)
T KOG1240|consen  426 VLTSCIRALKT----IQTKLAALELLQELSTYIDDEVKLD--RVLPYFVHLLMDSEADVRATALETLTELLALVRDIPPS  499 (1431)
T ss_pred             HHHHHHHhhhc----chhHHHHHHHHHHHhhhcchHHHHh--hhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCCcc
Confidence            34445555543    4789999998888888777555544  3688899999999999999999998887654    333


Q ss_pred             HHHHHHHcCcHHHHHHhhcCCC-HHHHHHHHHHHHHH-------------h-----cCChhcH---HHHHh------cCc
Q 015951          203 VQKQVLELGALSKLMKMVKSSF-VEEAVKALYTVSSL-------------I-----RNNLAGQ---EMFYV------EAG  254 (397)
Q Consensus       203 ~Q~~vl~~g~lp~Ll~LL~s~~-~~v~~kAl~ALS~L-------------i-----R~~~~~~---~~f~~------~gG  254 (397)
                      --..|.++ .+|.|-.|+.+.+ .-+|..-...|+-+             .     -+.|.+.   ..-.+      ..+
T Consensus       500 daniF~eY-lfP~L~~l~~d~~~~~vRiayAsnla~LA~tA~rFle~~q~~~~~g~~n~~nset~~~~~~~~~~~~L~~~  578 (1431)
T KOG1240|consen  500 DANIFPEY-LFPHLNHLLNDSSAQIVRIAYASNLAQLAKTAYRFLELTQELRQAGMLNDPNSETAPEQNYNTELQALHHT  578 (1431)
T ss_pred             cchhhHhh-hhhhhHhhhccCccceehhhHHhhHHHHHHHHHHHHHHHHHHHhcccccCcccccccccccchHHHHHHHH
Confidence            33445555 7899999988743 22332211111111             1     1222220   00000      123


Q ss_pred             HH-HHHHhhcCCCccHHHHHHHHHHHHHHhhchh-ccCC---------------CCcchhH---------------HhCC
Q 015951          255 DL-MLQDILGNSSFEIRLHRKAVSLVGDLAKCQL-ENMH---------------KVEPPLF---------------RDRF  302 (397)
Q Consensus       255 i~-~L~~lL~s~~~d~klr~kA~~lL~~L~~~~l-~~~~---------------~~~~~~l---------------~~~g  302 (397)
                      ++ ....+|.++  +.-+|+--+.-|.-||.--. +..+               ..++..|               .+++
T Consensus       579 V~~~v~sLlsd~--~~~Vkr~Lle~i~~LC~FFGk~ksND~iLshLiTfLNDkDw~LR~aFfdsI~gvsi~VG~rs~sey  656 (1431)
T KOG1240|consen  579 VEQMVSSLLSDS--PPIVKRALLESIIPLCVFFGKEKSNDVILSHLITFLNDKDWRLRGAFFDSIVGVSIFVGWRSVSEY  656 (1431)
T ss_pred             HHHHHHHHHcCC--chHHHHHHHHHHHHHHHHhhhcccccchHHHHHHHhcCccHHHHHHHHhhccceEEEEeeeeHHHH
Confidence            33 333444443  33466655555665654211 1111               1122221               3567


Q ss_pred             cHHHHHHhccCCChHHHHHHHHHHHHHhcCCh
Q 015951          303 FLKSVVDLTASADLDLQEKALAAIKNLLQLRT  334 (397)
Q Consensus       303 ~v~~Lv~lL~~~d~dv~E~aL~aL~~L~~~~~  334 (397)
                      +++.|.+-|....+-|..+||.+|..|.+.+-
T Consensus       657 llPLl~Q~ltD~EE~Viv~aL~~ls~Lik~~l  688 (1431)
T KOG1240|consen  657 LLPLLQQGLTDGEEAVIVSALGSLSILIKLGL  688 (1431)
T ss_pred             HHHHHHHhccCcchhhHHHHHHHHHHHHHhcc
Confidence            77888888888889999999999999987653

>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=91.24  E-value=5.7  Score=43.86  Aligned_cols=30  Identities=13%  Similarity=0.142  Sum_probs=24.7

Q ss_pred             CHHHHHHhcCCCCHHHHHHHHHHHHHHhcC
Q 015951          170 GLSVLVGQLNHPDTDIRKISAWILGKASQN  199 (397)
Q Consensus       170 Gl~~Li~lL~s~~~~ir~~Aa~vLg~~aqN  199 (397)
                      .+|.+..+|+|.++=||.+|.-+|+++-+|
T Consensus       135 l~p~IracleHrhsYVRrNAilaifsIyk~  164 (948)
T KOG1058|consen  135 LMPSIRACLEHRHSYVRRNAILAIFSIYKN  164 (948)
T ss_pred             hHHHHHHHHhCcchhhhhhhheeehhHHhh
Confidence            345555789999999999999999999887

>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]

Probab=91.15  E-value=5.2  Score=42.72  Aligned_cols=158  Identities=16%  Similarity=0.147  Sum_probs=109.4

Q ss_pred             CCHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhccCCCCchhHHHhcCCHHHHHHhcCCCC----HHHHHHHHHHHHHHh
Q 015951          122 PSDAQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPD----TDIRKISAWILGKAS  197 (397)
Q Consensus       122 ~~d~~lmk~~i~~L~~~~~s~e~k~~AL~~L~~Lve~iDnA~~~~~lGGl~~Li~lL~s~~----~~ir~~Aa~vLg~~a  197 (397)
                      -++....+.+++++.++.  ...+..|+..|..+--+...|..|+++.|+..|..+..+..    .++..........+.
T Consensus        79 ~sp~~~a~~i~e~l~~~~--~~~~~~a~k~l~sls~d~~fa~efi~~~gl~~L~~liedg~~~~~~~~L~~~L~af~elm  156 (713)
T KOG2999|consen   79 ASPSHYAKRIMEILTEGN--NISKMEALKELDSLSLDPTFAEEFIRCSGLELLFSLIEDGRVCMSSELLSTSLRAFSELM  156 (713)
T ss_pred             cCchHHHHHHHHHHhCCC--cHHHHHHHHHHhhccccHHHHHHHHhcchHHHHHHHHHcCccchHHHHHHHHHHHHHHHH
Confidence            355677899999998874  56777799999999999999999999999999999987643    455555555544443


Q ss_pred             cCChHHHHHHHHcCcHHHHHHhhcCC--CHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHH
Q 015951          198 QNNPLVQKQVLELGALSKLMKMVKSS--FVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKA  275 (397)
Q Consensus       198 qNNp~~Q~~vl~~g~lp~Ll~LL~s~--~~~v~~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klr~kA  275 (397)
                      ...-...+.+ ...++-....+.+-.  +..+-..|+.-+-+++-+.+.-.+.+.+.--++-|+..++..  +.+++..|
T Consensus       157 ehgvvsW~~~-~~~fV~~~a~~V~~~~~~a~~~~~AL~~LE~~vl~s~~~~~~v~eev~i~~li~hlq~~--n~~i~~~a  233 (713)
T KOG2999|consen  157 EHGVVSWESV-SNDFVVSMASYVNAKREDANTLLAALQMLESLVLGSDTLRQLVAEEVPIETLIRHLQVS--NQRIQTCA  233 (713)
T ss_pred             hhceeeeeec-ccHHHHHHHHHHhhhhhcccchHHHHHHHHHHHhCChHHHHHHHhcCcHHHHHHHHHhc--chHHHHHH
Confidence            2211111111 112333344444221  223456677777788877776677777788888888888865  66789999


Q ss_pred             HHHHHHHhh
Q 015951          276 VSLVGDLAK  284 (397)
Q Consensus       276 ~~lL~~L~~  284 (397)
                      ..++..|..
T Consensus       234 ial~nal~~  242 (713)
T KOG2999|consen  234 IALLNALFR  242 (713)
T ss_pred             HHHHHHHHh
Confidence            999999976

>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]

Probab=90.96  E-value=4.4  Score=43.41  Aligned_cols=146  Identities=14%  Similarity=0.120  Sum_probs=101.3

Q ss_pred             CHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHH
Q 015951          170 GLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMF  249 (397)
Q Consensus       170 Gl~~Li~lL~s~~~~ir~~Aa~vLg~~aqNNp~~Q~~vl~~g~lp~Ll~LL~s~~~~v~~kAl~ALS~LiR~~~~~~~~f  249 (397)
                      -+..++.-+..+.+.+|.....|+....-+   .+..-.+ -.++.+.+++.+.+...+.+|.|++..+++++.  ...+
T Consensus        97 ~~~~~~~~~~tps~~~q~~~~~~l~~~~~~---~~~~~~~-~~l~~l~~ll~~~~~~~~~~aa~~~ag~v~g~~--i~~~  170 (569)
T KOG1242|consen   97 IIEILLEELDTPSKSVQRAVSTCLPPLVVL---SKGLSGE-YVLELLLELLTSTKIAERAGAAYGLAGLVNGLG--IESL  170 (569)
T ss_pred             HHHHHHHhcCCCcHHHHHHHHHHhhhHHHH---hhccCHH-HHHHHHHHHhccccHHHHhhhhHHHHHHHcCcH--Hhhh
Confidence            456777788889999999999999888743   2221111 367888999998888889999999999998865  4677


Q ss_pred             HhcCcHHHHHHhhcCCCccHHHHHH-HHHHHHHHhhchhccCCCCcchhHHhCCcHHHHHHhcc---CCChHHHHHHHHH
Q 015951          250 YVEAGDLMLQDILGNSSFEIRLHRK-AVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTA---SADLDLQEKALAA  325 (397)
Q Consensus       250 ~~~gGi~~L~~lL~s~~~d~klr~k-A~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~---~~d~dv~E~aL~a  325 (397)
                      .+.+-+..|....++.+.  ..++. +.++.-..+.+    .++.     .+..+++.+..++.   +....+|+.|..|
T Consensus       171 ~~~~~l~~l~~ai~dk~~--~~~re~~~~a~~~~~~~----Lg~~-----~EPyiv~~lp~il~~~~d~~~~Vr~Aa~~a  239 (569)
T KOG1242|consen  171 KEFGFLDNLSKAIIDKKS--ALNREAALLAFEAAQGN----LGPP-----FEPYIVPILPSILTNFGDKINKVREAAVEA  239 (569)
T ss_pred             hhhhHHHHHHHHhcccch--hhcHHHHHHHHHHHHHh----cCCC-----CCchHHhhHHHHHHHhhccchhhhHHHHHH
Confidence            777888888888887632  34443 44444344331    2333     34445555555544   4577899999888


Q ss_pred             HHHHhcC
Q 015951          326 IKNLLQL  332 (397)
Q Consensus       326 L~~L~~~  332 (397)
                      ..++...
T Consensus       240 ~kai~~~  246 (569)
T KOG1242|consen  240 AKAIMRC  246 (569)
T ss_pred             HHHHHHh
Confidence            8887765

>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=90.92  E-value=4.5  Score=44.30  Aligned_cols=43  Identities=19%  Similarity=0.245  Sum_probs=30.9

Q ss_pred             hHHHhcCCHH-HHHHhcCCCCHHHHHHHHHHHHHHhcCChHHHH
Q 015951          163 NDLSKLGGLS-VLVGQLNHPDTDIRKISAWILGKASQNNPLVQK  205 (397)
Q Consensus       163 ~~~~~lGGl~-~Li~lL~s~~~~ir~~Aa~vLg~~aqNNp~~Q~  205 (397)
                      -|++..|+|. +++.+|+..+-.+-..|...|-.++.+||+.+.
T Consensus       180 pDl~~~~~W~~riv~LL~D~~~gv~ta~~sLi~~lvk~~p~~yk  223 (938)
T KOG1077|consen  180 PDLVNPGEWAQRIVHLLDDQHMGVVTAATSLIEALVKKNPESYK  223 (938)
T ss_pred             ccccChhhHHHHHHHHhCccccceeeehHHHHHHHHHcCCHHHh
Confidence            3556667765 667888887777777888888888877765544

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=90.65  E-value=5.8  Score=43.16  Aligned_cols=141  Identities=19%  Similarity=0.159  Sum_probs=83.8

Q ss_pred             HHHHhhCCCCCHHHHHHHHHHHHhccCCCCchhHHHhc----CCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHHHHH
Q 015951          131 AIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKL----GGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQ  206 (397)
Q Consensus       131 ~i~~L~~~~~s~e~k~~AL~~L~~Lve~iDnA~~~~~l----GGl~~Li~lL~s~~~~ir~~Aa~vLg~~aqNNp~~Q~~  206 (397)
                      ++.++-+  .+++.+--||+.|+.++-..-....|+..    .-+..++..++ .++..+..+++||.++..| |.-++.
T Consensus       549 ~l~~l~~--wp~~~~fPalDilRl~v~h~~~~s~~~~~~~~~~~~~~li~~~~-~~~an~ll~vR~L~N~f~~-~~g~~~  624 (745)
T KOG0301|consen  549 ALAILLQ--WPVEMMFPALDILRLAVKHHSSNSLFCDREEGQNLVGTLIPILN-ADPANQLLVVRCLANLFSN-PAGREL  624 (745)
T ss_pred             HHHHHhc--CCHHHhhhHHHHHHHHHhccchhhhhhhhhhhhHHHHhhhcccc-cchhHHHHHHHHHHHhccC-HHHHHH
Confidence            4444433  24667888999999999776666666653    23445555555 6788999999999999976 888888


Q ss_pred             HHHcCcHHHHHHhhc---C-CCHHH-HHHHHHHH--HH-HhcCChhcHHHHHhcCcHHHHHHhhc---CCCccHHHHHHH
Q 015951          207 VLELGALSKLMKMVK---S-SFVEE-AVKALYTV--SS-LIRNNLAGQEMFYVEAGDLMLQDILG---NSSFEIRLHRKA  275 (397)
Q Consensus       207 vl~~g~lp~Ll~LL~---s-~~~~v-~~kAl~AL--S~-LiR~~~~~~~~f~~~gGi~~L~~lL~---s~~~d~klr~kA  275 (397)
                      +...  +..++.-+.   + ++..+ +.-|..|+  |- ++..+.       +.+|.+.|..++.   .+..|....-+.
T Consensus       625 ~~s~--~~~i~~~~~~~~s~~~knl~ia~atlaln~sv~l~~~~~-------~~~~~~~l~~ai~~~~e~~~d~EA~yR~  695 (745)
T KOG0301|consen  625 FMSR--LESILDPVIEASSLSNKNLQIALATLALNYSVLLIQDNE-------QLEGKEVLLSAISTLLEPVDDLEAIYRL  695 (745)
T ss_pred             HHHH--HHHHhhhhhhhhcccchhHHHHHHHHHHHHHHHHHhccc-------ccchHHHHHHHHHhhcccchhHHHHHHH
Confidence            7765  333333222   1 11222 22222222  21 112111       2577777777664   233354456677


Q ss_pred             HHHHHHHhh
Q 015951          276 VSLVGDLAK  284 (397)
Q Consensus       276 ~~lL~~L~~  284 (397)
                      +-+|.+|+.
T Consensus       696 l~AlgtL~t  704 (745)
T KOG0301|consen  696 LVALGTLMT  704 (745)
T ss_pred             HHHHHhhcc
Confidence            778888875

>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM

Probab=90.46  E-value=1.9  Score=37.70  Aligned_cols=69  Identities=20%  Similarity=0.254  Sum_probs=56.0

Q ss_pred             HHHHHhcCCCCHHHHHHHHHHHHHHhcCC-hHHHHHHHHcCcHHHHHHhhcCCC-HH---HHHHHHHHHHHHhc
Q 015951          172 SVLVGQLNHPDTDIRKISAWILGKASQNN-PLVQKQVLELGALSKLMKMVKSSF-VE---EAVKALYTVSSLIR  240 (397)
Q Consensus       172 ~~Li~lL~s~~~~ir~~Aa~vLg~~aqNN-p~~Q~~vl~~g~lp~Ll~LL~s~~-~~---v~~kAl~ALS~LiR  240 (397)
                      ..|-.-|.+++|.++..|..++-.+++|. +.++..+.....+..|.+++.+.. ..   |+.+++--|..-..
T Consensus        45 ~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W~~  118 (140)
T PF00790_consen   45 RALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKSKKTDPETPVKEKILELLQEWAE  118 (140)
T ss_dssp             HHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTTTHHHSHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHccCCCCchhHHHHHHHHHHHHHHH
Confidence            34556788899999999999999999997 678888888889999999988654 33   88888877666543

Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....

>KOG0212 consensus Uncharacterized conserved protein [Function unknown]

Probab=90.32  E-value=6.4  Score=42.14  Aligned_cols=141  Identities=17%  Similarity=0.142  Sum_probs=99.7

Q ss_pred             CHHHHHHHHHHHHhccCCCCchhHHHhcCCHHHHHHhcCCCCH-HHHHHHHHHHHHHhcC--ChHHHHHHHHcC-cHHHH
Q 015951          141 SLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDT-DIRKISAWILGKASQN--NPLVQKQVLELG-ALSKL  216 (397)
Q Consensus       141 s~e~k~~AL~~L~~Lve~iDnA~~~~~lGGl~~Li~lL~s~~~-~ir~~Aa~vLg~~aqN--Np~~Q~~vl~~g-~lp~L  216 (397)
                      .++-+..|+.=+.++|.-.-+.--..-.|-+..+++|+.++++ .++..|..+-+.+..-  .+...+. ++.| .+..|
T Consensus       263 ~~~iq~~al~Wi~efV~i~g~~~l~~~s~il~~iLpc~s~~e~~~i~~~a~~~n~~l~~l~s~~~~~~~-id~~~ii~vl  341 (675)
T KOG0212|consen  263 EPEIQLKALTWIQEFVKIPGRDLLLYLSGILTAILPCLSDTEEMSIKEYAQMVNGLLLKLVSSERLKEE-IDYGSIIEVL  341 (675)
T ss_pred             cHHHHHHHHHHHHHHhcCCCcchhhhhhhhhhhcccCCCCCccccHHHHHHHHHHHHHHHHhhhhhccc-cchHHHHHHH
Confidence            3566777888888888765555555556778888899977766 5888887765443321  1222211 4444 46788


Q ss_pred             HHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhc
Q 015951          217 MKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKC  285 (397)
Q Consensus       217 l~LL~s~~~~v~~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klr~kA~~lL~~L~~~  285 (397)
                      .+.++++..+.|..++.=|.-+-+.+|. +--.....-+..|...|.++++  .+-.++.++++++|..
T Consensus       342 ~~~l~~~~~~tri~~L~Wi~~l~~~~p~-ql~~h~~~if~tLL~tLsd~sd--~vvl~~L~lla~i~~s  407 (675)
T KOG0212|consen  342 TKYLSDDREETRIAVLNWIILLYHKAPG-QLLVHNDSIFLTLLKTLSDRSD--EVVLLALSLLASICSS  407 (675)
T ss_pred             HHHhhcchHHHHHHHHHHHHHHHhhCcc-hhhhhccHHHHHHHHhhcCchh--HHHHHHHHHHHHHhcC
Confidence            8899998889999999999988766654 4444456678888888888743  4788999999999974

>KOG1248 consensus Uncharacterized conserved protein [Function unknown]

Probab=90.30  E-value=8.5  Score=44.34  Aligned_cols=175  Identities=13%  Similarity=0.118  Sum_probs=103.6

Q ss_pred             HHHHHHHHHHhccCCCCchh-HHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcC------cHHHH
Q 015951          144 DSQRALQELLILVEPIDNAN-DLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELG------ALSKL  216 (397)
Q Consensus       144 ~k~~AL~~L~~Lve~iDnA~-~~~~lGGl~~Li~lL~s~~~~ir~~Aa~vLg~~aqNNp~~Q~~vl~~g------~lp~L  216 (397)
                      .+..++..|..+++-.++=. +|+ ...++-+|=+++.-+..-|..|..||-.++.     -..+.+.|      .|...
T Consensus       713 ~~~~rl~~L~~L~~~~~~e~~~~i-~k~I~EvIL~~Ke~n~~aR~~Af~lL~~i~~-----i~~~~d~g~e~~~~~lnef  786 (1176)
T KOG1248|consen  713 AQASRLKCLKRLLKLLSAEHCDLI-PKLIPEVILSLKEVNVKARRNAFALLVFIGA-----IQSSLDDGNEPASAILNEF  786 (1176)
T ss_pred             HHHHHHHHHHHHHHhccHHHHHHH-HHHHHHHHHhcccccHHHHhhHHHHHHHHHH-----HHhhhcccccchHHHHHHH
Confidence            45566777776666555111 122 1345555444577889999999999998882     11112222      44455


Q ss_pred             HHhhcCC----CHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCC
Q 015951          217 MKMVKSS----FVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHK  292 (397)
Q Consensus       217 l~LL~s~----~~~v~~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klr~kA~~lL~~L~~~~l~~~~~  292 (397)
                      +.++...    ..-+....+.|++.++..+......-.-.+-++.+..+|.+.  ...++.-|+.++.-++..     .|
T Consensus       787 l~~Isagl~gd~~~~~as~Ivai~~il~e~~~~ld~~~l~~li~~V~~~L~s~--sreI~kaAI~fikvlv~~-----~p  859 (1176)
T KOG1248|consen  787 LSIISAGLVGDSTRVVASDIVAITHILQEFKNILDDETLEKLISMVCLYLASN--SREIAKAAIGFIKVLVYK-----FP  859 (1176)
T ss_pred             HHHHHhhhcccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHHHHc-----CC
Confidence            5555433    333344448999998876655444333345666777777776  456788888998888752     33


Q ss_pred             CcchhHHhCCcHHHHHHhccCCChHHHHHHHHHHHHHhc
Q 015951          293 VEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQ  331 (397)
Q Consensus       293 ~~~~~l~~~g~v~~Lv~lL~~~d~dv~E~aL~aL~~L~~  331 (397)
                      +..-.-...-+++.+..++......++-++-..|..|..
T Consensus       860 e~~l~~~~~~LL~sll~ls~d~k~~~r~Kvr~LlekLir  898 (1176)
T KOG1248|consen  860 EECLSPHLEELLPSLLALSHDHKIKVRKKVRLLLEKLIR  898 (1176)
T ss_pred             HHHHhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence            322222222366777776666566777777666665553

>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]

Probab=90.21  E-value=2  Score=46.28  Aligned_cols=70  Identities=21%  Similarity=0.167  Sum_probs=57.2

Q ss_pred             CCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChH---HHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcC
Q 015951          169 GGLSVLVGQLNHPDTDIRKISAWILGKASQNNPL---VQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRN  241 (397)
Q Consensus       169 GGl~~Li~lL~s~~~~ir~~Aa~vLg~~aqNNp~---~Q~~vl~~g~lp~Ll~LL~s~~~~v~~kAl~ALS~LiR~  241 (397)
                      |-+|.|.+.|++....|..+....+|++|.|.|+   .++++.   .--.|+.+|.+-+.++|+.|...++++.|-
T Consensus       688 ~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEWMR---IcfeLvd~Lks~nKeiRR~A~~tfG~Is~a  760 (975)
T COG5181         688 GILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIGVREWMR---ICFELVDSLKSWNKEIRRNATETFGCISRA  760 (975)
T ss_pred             hccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHHHH---HHHHHHHHHHHhhHHHHHhhhhhhhhHHhh
Confidence            6788889999999999999999999999999886   344433   123478888888889999999988888764

>PF10363 DUF2435: Protein of unknown function (DUF2435)

Probab=90.06  E-value=1.3  Score=36.19  Aligned_cols=72  Identities=15%  Similarity=0.136  Sum_probs=56.5

Q ss_pred             HHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChh
Q 015951          171 LSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLA  244 (397)
Q Consensus       171 l~~Li~lL~s~~~~ir~~Aa~vLg~~aqNNp~~Q~~vl~~g~lp~Ll~LL~s~~~~v~~kAl~ALS~LiR~~~~  244 (397)
                      +...+..|+++.+.+|.++...|+.+...+.  ....--.+.+..++..|+++++-+--.|+.+++.++..+|.
T Consensus         5 ~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~--~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p~   76 (92)
T PF10363_consen    5 LQEALSDLNDPLPPVRAHGLVLLRKLIESKS--EPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHPD   76 (92)
T ss_pred             HHHHHHHccCCCcchHHHHHHHHHHHHHcCC--cchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHChH
Confidence            4456778899999999999999999998776  11122235677888889888888888888889988877765

>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]

Probab=89.82  E-value=8.5  Score=45.47  Aligned_cols=146  Identities=12%  Similarity=0.144  Sum_probs=97.0

Q ss_pred             CCHHHHHHHHHHHhhCCCC---------CHHHHHHHHHHHHhccCCCCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHH
Q 015951          122 PSDAQLIQIAIDDLNNSTL---------SLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWI  192 (397)
Q Consensus       122 ~~d~~lmk~~i~~L~~~~~---------s~e~k~~AL~~L~~Lve~iDnA~~~~~lGGl~~Li~lL~s~~~~ir~~Aa~v  192 (397)
                      +..-..||-.+..+...+.         +--+.-+|.....++.+.-...+.|-  +-+..++..|..+.+.+|..|..|
T Consensus       762 ~~~~n~~K~~~~~Ik~~~~~~~~~~~~s~~~d~~~a~li~~~la~~r~f~~sfD--~yLk~Il~~l~e~~ialRtkAlKc  839 (1692)
T KOG1020|consen  762 ITVENELKYILSKIKDKEKSGRGPKLNSRFADDDDAKLIVFYLAHARSFSQSFD--PYLKLILSVLGENAIALRTKALKC  839 (1692)
T ss_pred             hhhHHHHHHHHHHhcchhhhccCcCCCCccccchhHHHHHHHHHhhhHHHHhhH--HHHHHHHHHhcCchHHHHHHHHHH
Confidence            3444556666666655420         00122234444445555444444443  235566788899999999999999


Q ss_pred             HHHHhcC------ChHHHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCC
Q 015951          193 LGKASQN------NPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSS  266 (397)
Q Consensus       193 Lg~~aqN------Np~~Q~~vl~~g~lp~Ll~LL~s~~~~v~~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~  266 (397)
                      |+.++.-      +|.+|..|..         =+.+++..||..|+--+|.-+-.+|....++++     .+..-+.++ 
T Consensus       840 lS~ive~Dp~vL~~~dvq~~Vh~---------R~~DssasVREAaldLvGrfvl~~~e~~~qyY~-----~i~erIlDt-  904 (1692)
T KOG1020|consen  840 LSMIVEADPSVLSRPDVQEAVHG---------RLNDSSASVREAALDLVGRFVLSIPELIFQYYD-----QIIERILDT-  904 (1692)
T ss_pred             HHHHHhcChHhhcCHHHHHHHHH---------hhccchhHHHHHHHHHHhhhhhccHHHHHHHHH-----HHHhhcCCC-
Confidence            9999875      4555555543         344556789999999999888888887777763     333334443 


Q ss_pred             ccHHHHHHHHHHHHHHhhc
Q 015951          267 FEIRLHRKAVSLVGDLAKC  285 (397)
Q Consensus       267 ~d~klr~kA~~lL~~L~~~  285 (397)
                       .+.+|.++...+.++|.+
T Consensus       905 -gvsVRKRvIKIlrdic~e  922 (1692)
T KOG1020|consen  905 -GVSVRKRVIKILRDICEE  922 (1692)
T ss_pred             -chhHHHHHHHHHHHHHHh
Confidence             566999999999999974

>KOG2973 consensus Uncharacterized conserved protein [Function unknown]

Probab=89.82  E-value=1.8  Score=43.05  Aligned_cols=114  Identities=17%  Similarity=0.129  Sum_probs=84.5

Q ss_pred             HHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHHH--hcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccC
Q 015951          213 LSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFY--VEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENM  290 (397)
Q Consensus       213 lp~Ll~LL~s~~~~v~~kAl~ALS~LiR~~~~~~~~f~--~~gGi~~L~~lL~s~~~d~klr~kA~~lL~~L~~~~l~~~  290 (397)
                      +-.++.++.+.++.||..|+.-+.+++..  + .+.|.  +.--++.|.+++...  +.  ...|++++-|++.      
T Consensus         5 l~elv~ll~~~sP~v~~~AV~~l~~lt~~--~-~~~~~~~~~~~lk~l~qL~~~~--~~--~~~a~~alVnlsq------   71 (353)
T KOG2973|consen    5 LVELVELLHSLSPPVRKAAVEHLLGLTGR--G-LQSLSKYSEALLKDLTQLLKDL--DP--AEPAATALVNLSQ------   71 (353)
T ss_pred             HHHHHHHhccCChHHHHHHHHHHhhcccc--c-hhhhccchhhhHHHHHHHccCc--cc--ccHHHHHHHHHHh------
Confidence            45688999999999999999999888765  2 22332  234566677777754  22  5679999999985      


Q ss_pred             CCCcchhHHhCCcHHHHHHhccCCChHHHHHHHHHHHHHhcCChHHHHHH
Q 015951          291 HKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLRTTEALVL  340 (397)
Q Consensus       291 ~~~~~~~l~~~g~v~~Lv~lL~~~d~dv~E~aL~aL~~L~~~~~~~r~~~  340 (397)
                      ++..+..+.+. +++.++..+..+....-+-....|.||++....++..+
T Consensus        72 ~~~l~~~ll~~-~~k~l~~~~~~p~~~lad~~cmlL~NLs~~~~~~~~ll  120 (353)
T KOG2973|consen   72 KEELRKKLLQD-LLKVLMDMLTDPQSPLADLICMLLSNLSRDDDEVAALL  120 (353)
T ss_pred             hHHHHHHHHHH-HHHHHHHHhcCcccchHHHHHHHHHHhccCchHHHHHH
Confidence            56677777766 88889998888877778888888899998876665544

>KOG1248 consensus Uncharacterized conserved protein [Function unknown]

Probab=89.54  E-value=16  Score=42.18  Aligned_cols=107  Identities=15%  Similarity=0.129  Sum_probs=78.2

Q ss_pred             HHHHh-cCCCCHHHHHHHHHHHHHHhcCChHHHHHHHHc--CcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHH
Q 015951          173 VLVGQ-LNHPDTDIRKISAWILGKASQNNPLVQKQVLEL--GALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMF  249 (397)
Q Consensus       173 ~Li~l-L~s~~~~ir~~Aa~vLg~~aqNNp~~Q~~vl~~--g~lp~Ll~LL~s~~~~v~~kAl~ALS~LiR~~~~~~~~f  249 (397)
                      .+... .++.++.+|..|-.+|..+++. |.++-.+.+.  .....|.+-+++.+...+..++.+|+.+++.++.-...|
T Consensus       657 ~v~~~~e~~~~~~vQkK~yrlL~~l~~~-~s~~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~  735 (1176)
T KOG1248|consen  657 TVDPEFENSSSTKVQKKAYRLLEELSSS-PSGEGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEHCDL  735 (1176)
T ss_pred             HhhHHhhccccHHHHHHHHHHHHHHhcC-CchhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHHHHHH
Confidence            45544 4677999999999999999987 6555555443  234555566666666789999999999999888545556


Q ss_pred             HhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHh
Q 015951          250 YVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLA  283 (397)
Q Consensus       250 ~~~gGi~~L~~lL~s~~~d~klr~kA~~lL~~L~  283 (397)
                      +-..-.++++.. +..  +.+.|+.|.-+|..++
T Consensus       736 i~k~I~EvIL~~-Ke~--n~~aR~~Af~lL~~i~  766 (1176)
T KOG1248|consen  736 IPKLIPEVILSL-KEV--NVKARRNAFALLVFIG  766 (1176)
T ss_pred             HHHHHHHHHHhc-ccc--cHHHHhhHHHHHHHHH
Confidence            655555565555 543  6778999999999998

>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=89.45  E-value=7.8  Score=42.69  Aligned_cols=160  Identities=14%  Similarity=0.143  Sum_probs=105.0

Q ss_pred             HhHHHHHHHHHhcC-CCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhccCCCCchhHHHhcCCHHHHHHhcCCCCHHH
Q 015951          107 KRQMEIKELMEKLK-TPSDAQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDI  185 (397)
Q Consensus       107 ~r~~~L~ea~~~~~-~~~d~~lmk~~i~~L~~~~~s~e~k~~AL~~L~~Lve~iDnA~~~~~lGGl~~Li~lL~s~~~~i  185 (397)
                      +|++-+|.++..++ ++|-..+--..+.-....  +.+.|.-.-.-+-.    .-..+-....+.+..++.=..++++.+
T Consensus        29 kr~~a~kkvIa~Mt~G~DvSslF~dvvk~~~T~--dlelKKlvyLYl~n----Ya~~~P~~a~~avnt~~kD~~d~np~i  102 (734)
T KOG1061|consen   29 KRKDAVKKVIAYMTVGKDVSSLFPDVVKCMQTR--DLELKKLVYLYLMN----YAKGKPDLAILAVNTFLKDCEDPNPLI  102 (734)
T ss_pred             hHHHHHHHHHhcCccCcchHhhhHHHHhhcccC--CchHHHHHHHHHHH----hhccCchHHHhhhhhhhccCCCCCHHH
Confidence            68888999998886 344333322222222222  23444333222222    222222333456666776677899999


Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCC
Q 015951          186 RKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNS  265 (397)
Q Consensus       186 r~~Aa~vLg~~aqNNp~~Q~~vl~~g~lp~Ll~LL~s~~~~v~~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~  265 (397)
                      |..|.+.+|.+-  -+...+.     ...+|.+.++++.+-+|+.|...+..+-.-+   .+.+...|=+..|..++.+.
T Consensus       103 R~lAlrtm~~l~--v~~i~ey-----~~~Pl~~~l~d~~~yvRktaa~~vakl~~~~---~~~~~~~gl~~~L~~ll~D~  172 (734)
T KOG1061|consen  103 RALALRTMGCLR--VDKITEY-----LCDPLLKCLKDDDPYVRKTAAVCVAKLFDID---PDLVEDSGLVDALKDLLSDS  172 (734)
T ss_pred             HHHHhhceeeEe--ehHHHHH-----HHHHHHHhccCCChhHHHHHHHHHHHhhcCC---hhhccccchhHHHHHHhcCC
Confidence            999999988774  3444443     4678999999999999999988888874333   46777888899999999965


Q ss_pred             CccHHHHHHHHHHHHHHhh
Q 015951          266 SFEIRLHRKAVSLVGDLAK  284 (397)
Q Consensus       266 ~~d~klr~kA~~lL~~L~~  284 (397)
                        ++-+-..|+.+++.+..
T Consensus       173 --~p~VVAnAlaaL~eI~e  189 (734)
T KOG1061|consen  173 --NPMVVANALAALSEIHE  189 (734)
T ss_pred             --CchHHHHHHHHHHHHHH
Confidence              44578888888888875

>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins

Probab=89.44  E-value=19  Score=37.07  Aligned_cols=137  Identities=18%  Similarity=0.112  Sum_probs=92.9

Q ss_pred             hHHHHHHHHHhcCCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhccCCCC---------chhHHHhcC----CHHHH
Q 015951          108 RQMEIKELMEKLKTPSDAQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPID---------NANDLSKLG----GLSVL  174 (397)
Q Consensus       108 r~~~L~ea~~~~~~~~d~~lmk~~i~~L~~~~~s~e~k~~AL~~L~~Lve~iD---------nA~~~~~lG----Gl~~L  174 (397)
                      -.-|+-+++=.=+-|.-.+...++++.+.++    +-...|-+.+..++.+.|         +.+-+.+-.    -+|.+
T Consensus       253 ~~~Wi~KaLv~R~~~~~~~~~~~L~~lL~~~----~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L  328 (415)
T PF12460_consen  253 ILIWITKALVMRGHPLATELLDKLLELLSSP----ELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQVLPKL  328 (415)
T ss_pred             HHHHHHHHHHHcCCchHHHHHHHHHHHhCCh----hhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHHHHHHH
Confidence            3456666542213455666777788888763    344556666666665532         223344443    45555


Q ss_pred             HHhcCCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHH
Q 015951          175 VGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEM  248 (397)
Q Consensus       175 i~lL~s~~~~ir~~Aa~vLg~~aqNNp~~Q~~vl~~g~lp~Ll~LL~s~~~~v~~kAl~ALS~LiR~~~~~~~~  248 (397)
                      ++..+..+.+.|.....+|+.+..|-|..--.---...+|.|++-|+.++..++..++..|..++++.+.....
T Consensus       329 ~~~~~~~~~~~k~~yL~ALs~ll~~vP~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~~~~i~~  402 (415)
T PF12460_consen  329 LEGFKEADDEIKSNYLTALSHLLKNVPKSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEAPELISE  402 (415)
T ss_pred             HHHHhhcChhhHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCHHHHHH
Confidence            66556667779999999999999998843222212357899999999988899999999999999988665544

MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].

>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle

Probab=89.33  E-value=1.2  Score=39.77  Aligned_cols=101  Identities=18%  Similarity=0.100  Sum_probs=76.3

Q ss_pred             hcCCCCHHHHHHHHHHHHHHhcCChHHHHHHH-HcCcHHHHHHhhc--CCCHHHHHHHHHHHHHHhcCChhcHHHHHhcC
Q 015951          177 QLNHPDTDIRKISAWILGKASQNNPLVQKQVL-ELGALSKLMKMVK--SSFVEEAVKALYTVSSLIRNNLAGQEMFYVEA  253 (397)
Q Consensus       177 lL~s~~~~ir~~Aa~vLg~~aqNNp~~Q~~vl-~~g~lp~Ll~LL~--s~~~~v~~kAl~ALS~LiR~~~~~~~~f~~~g  253 (397)
                      ++..++.+-...|..+++.+-+--|.+-..++ ..|.++.++.+..  +.+..++..++.+|+..+-+  .....|+..+
T Consensus        51 ~~~~~~~d~~i~~~~~l~~lfp~~~dv~~~l~~~eg~~~~l~~~~~~~~~~~~~~~~~lell~aAc~d--~~~r~~I~~~  128 (157)
T PF11701_consen   51 LLDEGEMDSLIIAFSALTALFPGPPDVGSELFLSEGFLESLLPLASRKSKDRKVQKAALELLSAACID--KSCRTFISKN  128 (157)
T ss_dssp             HHCCHHCCHHHHHHHHHHHHCTTTHHHHHHHCCTTTHHHHHHHHHH-CTS-HHHHHHHHHHHHHHTTS--HHHHHCCHHH
T ss_pred             HHccccchhHHHHHHHHHHHhCCCHHHHHHHHhhhhHHHHHHHHHhcccCCHHHHHHHHHHHHHHHcc--HHHHHHHHHH
Confidence            44555556788899999999999998777766 6688899999999  66778899999999987643  4567777889


Q ss_pred             cHHHHHHhhcCCCccHH-HHHHHHHHHH
Q 015951          254 GDLMLQDILGNSSFEIR-LHRKAVSLVG  280 (397)
Q Consensus       254 Gi~~L~~lL~s~~~d~k-lr~kA~~lL~  280 (397)
                      |++.|..+++.+. +.. +|..|+-.|.
T Consensus       129 ~~~~L~~~~~~~~-~~~~ir~~A~v~L~  155 (157)
T PF11701_consen  129 YVSWLKELYKNSK-DDSEIRVLAAVGLC  155 (157)
T ss_dssp             CHHHHHHHTTTCC--HH-CHHHHHHHHH
T ss_pred             HHHHHHHHHcccc-chHHHHHHHHHHHh
Confidence            9999999997543 333 6666655443

Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.

>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]

Probab=88.76  E-value=8.3  Score=41.27  Aligned_cols=156  Identities=12%  Similarity=0.132  Sum_probs=112.8

Q ss_pred             HHHHHhcCCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCcHHHHHHhhcCCCH----HHHHHHHHHHHHHhcCChhcHH
Q 015951          172 SVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFV----EEAVKALYTVSSLIRNNLAGQE  247 (397)
Q Consensus       172 ~~Li~lL~s~~~~ir~~Aa~vLg~~aqNNp~~Q~~vl~~g~lp~Ll~LL~s~~~----~v~~kAl~ALS~LiR~~~~~~~  247 (397)
                      ..+.+.+.+++..-|..|..-+..+.. .+..-..|+...++..|.+++.++..    .+..-.+.|+|.+.-|.--...
T Consensus        86 ~~i~e~l~~~~~~~~~~a~k~l~sls~-d~~fa~efi~~~gl~~L~~liedg~~~~~~~~L~~~L~af~elmehgvvsW~  164 (713)
T KOG2999|consen   86 KRIMEILTEGNNISKMEALKELDSLSL-DPTFAEEFIRCSGLELLFSLIEDGRVCMSSELLSTSLRAFSELMEHGVVSWE  164 (713)
T ss_pred             HHHHHHHhCCCcHHHHHHHHHHhhccc-cHHHHHHHHhcchHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhceeeee
Confidence            345677888888888889999999886 57788889999999999999998763    5677889999998776543332


Q ss_pred             HHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHHhCCcHHHHHHhccCCChHHHHHHHHHHH
Q 015951          248 MFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIK  327 (397)
Q Consensus       248 ~f~~~gGi~~L~~lL~s~~~d~klr~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~dv~E~aL~aL~  327 (397)
                      .+ ...++.....+.+-+..+..+-..|...+-++..     .++.....+.++--+..++.+|...|..++-.|+..+.
T Consensus       165 ~~-~~~fV~~~a~~V~~~~~~a~~~~~AL~~LE~~vl-----~s~~~~~~v~eev~i~~li~hlq~~n~~i~~~aial~n  238 (713)
T KOG2999|consen  165 SV-SNDFVVSMASYVNAKREDANTLLAALQMLESLVL-----GSDTLRQLVAEEVPIETLIRHLQVSNQRIQTCAIALLN  238 (713)
T ss_pred             ec-ccHHHHHHHHHHhhhhhcccchHHHHHHHHHHHh-----CChHHHHHHHhcCcHHHHHHHHHhcchHHHHHHHHHHH
Confidence            22 2233333333333222233355567777777775     35567788889999999999999999899988888777


Q ss_pred             HHhcCCh
Q 015951          328 NLLQLRT  334 (397)
Q Consensus       328 ~L~~~~~  334 (397)
                      ++....+
T Consensus       239 al~~~a~  245 (713)
T KOG2999|consen  239 ALFRKAP  245 (713)
T ss_pred             HHHhhCC
Confidence            7665433

>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing

Probab=88.70  E-value=6.1  Score=40.50  Aligned_cols=126  Identities=13%  Similarity=0.109  Sum_probs=94.3

Q ss_pred             HHHHHHHHHHhhCCC-CCHHHHHHHHHHHHhccCCCCch-hHHHhcCCHHHHHHhcC-C---CCHHHHHHHHHHHHHHhc
Q 015951          125 AQLIQIAIDDLNNST-LSLEDSQRALQELLILVEPIDNA-NDLSKLGGLSVLVGQLN-H---PDTDIRKISAWILGKASQ  198 (397)
Q Consensus       125 ~~lmk~~i~~L~~~~-~s~e~k~~AL~~L~~Lve~iDnA-~~~~~lGGl~~Li~lL~-s---~~~~ir~~Aa~vLg~~aq  198 (397)
                      ..+..-+..++.|+. +.+.---.|+..+.+++++--.. ..+...|..+.+++.+. .   ++.++-..--.+++.+|=
T Consensus       105 s~L~~sL~~Il~n~~~FG~~v~s~a~~ivs~~I~nePT~~~~l~e~Gl~~~~L~~i~~~~i~~s~e~l~~lP~~l~AicL  184 (379)
T PF06025_consen  105 SSLLSSLKHILENPEVFGPSVFSLAINIVSDFIHNEPTSFSILQEAGLIDAFLDAITAKGILPSSEVLTSLPNVLSAICL  184 (379)
T ss_pred             hhHHHHHHHHHhCccccchHHHHHHHHHHHHHHhcCCchhHHHHHcCChHHHHHHHhccCCCCcHHHHHHHHHHHhHHhc
Confidence            566777778888765 34556667899999999875544 57888888888998776 3   678888889999999997


Q ss_pred             CChHHHHHHHHcCcHHHHHHhhcCCCH--HHHH-HHHHHHH----HHhcCChhcHHHHHh
Q 015951          199 NNPLVQKQVLELGALSKLMKMVKSSFV--EEAV-KALYTVS----SLIRNNLAGQEMFYV  251 (397)
Q Consensus       199 NNp~~Q~~vl~~g~lp~Ll~LL~s~~~--~v~~-kAl~ALS----~LiR~~~~~~~~f~~  251 (397)
                      | ..-++.|.+.+.++.+++++.+..=  ..+. -....|+    -|+||+|.-+..+++
T Consensus       185 N-~~Gl~~~~~~~~l~~~f~if~s~~~~~~l~~~d~a~~lG~~~DEL~RH~p~Lk~~i~~  243 (379)
T PF06025_consen  185 N-NRGLEKVKSSNPLDKLFEIFTSPDYVKALRRRDTASNLGNSFDELMRHHPSLKPDIID  243 (379)
T ss_pred             C-HHHHHHHHhcChHHHHHHHhCCHHHHHHhcccchHHHHHHHHHHHHccCHHHHHHHHH
Confidence            6 4588889999999999999987541  1111 2344444    489999987776654

This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.

>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4

Probab=88.62  E-value=13  Score=41.73  Aligned_cols=122  Identities=20%  Similarity=0.272  Sum_probs=82.3

Q ss_pred             hhHHHhcCCHHHHHHhcCC-----CCHHHHHHHHHHHHHHhcCChHHHHHHHHcCcHHHHHHhhc----CCC----HHHH
Q 015951          162 ANDLSKLGGLSVLVGQLNH-----PDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVK----SSF----VEEA  228 (397)
Q Consensus       162 A~~~~~lGGl~~Li~lL~s-----~~~~ir~~Aa~vLg~~aqNNp~~Q~~vl~~g~lp~Ll~LL~----s~~----~~v~  228 (397)
                      ++.+.+.||+..+++.|.+     ...++-.....++..+|+ -+.+++++++.|+++.|++.+.    ...    ..+.
T Consensus       110 ~~v~~~~gGL~~ll~~l~~~~~~~~~~~ll~~llkLL~~c~K-v~~NR~~Ll~~~al~~LL~~L~~~l~~~~~~~~~~i~  188 (802)
T PF13764_consen  110 ASVLAECGGLEVLLSRLDSIRDFSRGRELLQVLLKLLRYCCK-VKVNRRALLELNALNRLLSVLNRALQANQNSSQAEIA  188 (802)
T ss_pred             HHHhhcCCCHHHHHHHHHhhccccCcHHHHHHHHHHHHHHHh-hHHHHHHHHHcCCHHHHHHHHHHHHhCccccccchHH
Confidence            5666778999999998865     335677778889999986 5899999999999999998874    322    3445


Q ss_pred             HHHHHHHHHHhcCC----hhcHHHHHhcCc--------HHHHHHhhcCC--CccHHHHHHHHHHHHHHhh
Q 015951          229 VKALYTVSSLIRNN----LAGQEMFYVEAG--------DLMLQDILGNS--SFEIRLHRKAVSLVGDLAK  284 (397)
Q Consensus       229 ~kAl~ALS~LiR~~----~~~~~~f~~~gG--------i~~L~~lL~s~--~~d~klr~kA~~lL~~L~~  284 (397)
                      .+.+.-+-.++..-    ......+....|        +..|...+.++  ..+.++..-.+.+|-+|+.
T Consensus       189 E~LL~IiE~ll~ea~~~~~~~~~~~~~~~~~~~~~~~~v~~lL~~l~s~~~r~~~~i~~~l~RiLP~Lt~  258 (802)
T PF13764_consen  189 EQLLEIIESLLSEANSSSSSESKSSSSLSGSEEQDKEQVEMLLERLNSPFVRSNPQILQALARILPFLTY  258 (802)
T ss_pred             HHHHHHHHHHHHHHhhhhhhhccccccccccccccHHHHHHHHHHhcCccccCCHHHHHHHHHHhhHHhc
Confidence            55554444443321    111122233344        67777777754  2356677788888888876

>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms

Probab=88.21  E-value=2.5  Score=45.37  Aligned_cols=98  Identities=16%  Similarity=0.202  Sum_probs=55.1

Q ss_pred             HHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHHH
Q 015951          171 LSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFY  250 (397)
Q Consensus       171 l~~Li~lL~s~~~~ir~~Aa~vLg~~aqNNp~~Q~~vl~~g~lp~Ll~LL~s~~~~v~~kAl~ALS~LiR~~~~~~~~f~  250 (397)
                      +..+++++...+..||..|..-|..+|.+||+.-..+     ...|++||.+++......+=.+|.++++.+|.+.-.  
T Consensus        61 i~a~~DLcEDed~~iR~~aik~lp~~ck~~~~~v~kv-----aDvL~QlL~tdd~~E~~~v~~sL~~ll~~d~k~tL~--  133 (556)
T PF05918_consen   61 INAQLDLCEDEDVQIRKQAIKGLPQLCKDNPEHVSKV-----ADVLVQLLQTDDPVELDAVKNSLMSLLKQDPKGTLT--  133 (556)
T ss_dssp             HHHHHHHHT-SSHHHHHHHHHHGGGG--T--T-HHHH-----HHHHHHHTT---HHHHHHHHHHHHHHHHH-HHHHHH--
T ss_pred             HHHHHHHHhcccHHHHHHHHHhHHHHHHhHHHHHhHH-----HHHHHHHHhcccHHHHHHHHHHHHHHHhcCcHHHHH--
Confidence            3445555555668999999999999999988554444     567899999988776777777787887776653211  


Q ss_pred             hcCcHHHHHHhhcCCCccHHHHHHHHHHHH
Q 015951          251 VEAGDLMLQDILGNSSFEIRLHRKAVSLVG  280 (397)
Q Consensus       251 ~~gGi~~L~~lL~s~~~d~klr~kA~~lL~  280 (397)
                           .++.++..+++.+..+|.++..+|.
T Consensus       134 -----~lf~~i~~~~~~de~~Re~~lkFl~  158 (556)
T PF05918_consen  134 -----GLFSQIESSKSGDEQVRERALKFLR  158 (556)
T ss_dssp             -----HHHHHHH---HS-HHHHHHHHHHHH
T ss_pred             -----HHHHHHHhcccCchHHHHHHHHHHH
Confidence                 1122233111124457777776554

Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.

>PF08167 RIX1: rRNA processing/ribosome biogenesis

Probab=87.74  E-value=7.9  Score=34.78  Aligned_cols=115  Identities=15%  Similarity=0.103  Sum_probs=80.8

Q ss_pred             CcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCc--HHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhc
Q 015951          211 GALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAG--DLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLE  288 (397)
Q Consensus       211 g~lp~Ll~LL~s~~~~v~~kAl~ALS~LiR~~~~~~~~f~~~gG--i~~L~~lL~s~~~d~klr~kA~~lL~~L~~~~l~  288 (397)
                      .....+.++|++.+...|-.++.-+..++..++.  +.|.++++  +..|..+|+.+ ++..++.-++..+.+|...-  
T Consensus        25 ~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~--e~l~~~~~~W~~~Ll~~L~~~-~~~~~~~~ai~~L~~l~~~~--   99 (165)
T PF08167_consen   25 KLVTRINSLLQSKSAYSRWAGLCLLKVTVEQCSW--EILLSHGSQWLRALLSILEKP-DPPSVLEAAIITLTRLFDLI--   99 (165)
T ss_pred             HHHHHHHHHhCCCChhhHHHHHHHHHHHHHHhhH--HHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHHHHHh--
Confidence            3566788999998888899999999999887643  56656554  56778888875 45678889999999998631  


Q ss_pred             cCCCCcchhHHh---CCcHHHHHHhccCCChHHHHHHHHHHHHHhcC
Q 015951          289 NMHKVEPPLFRD---RFFLKSVVDLTASADLDLQEKALAAIKNLLQL  332 (397)
Q Consensus       289 ~~~~~~~~~l~~---~g~v~~Lv~lL~~~d~dv~E~aL~aL~~L~~~  332 (397)
                      ...++....+..   .++++.++.++..  ..+.+.++.+|..+...
T Consensus       100 ~~~p~l~Rei~tp~l~~~i~~ll~l~~~--~~~~~~~l~~L~~ll~~  144 (165)
T PF08167_consen  100 RGKPTLTREIATPNLPKFIQSLLQLLQD--SSCPETALDALATLLPH  144 (165)
T ss_pred             cCCCchHHHHhhccHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHH
Confidence            123333222222   2455555666654  57889999999998875

>PF04869 Uso1_p115_head: Uso1 / p115 like vesicle tethering protein, head region; InterPro: IPR006953 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associated protein (TAP) or Vesicle docking protein, this myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []

Probab=87.52  E-value=8.6  Score=38.41  Aligned_cols=146  Identities=14%  Similarity=0.072  Sum_probs=87.6

Q ss_pred             CHHHHHHHHHHHHHHhcCChHHHHHHHHc-----------CcHHHHHHhhcCCC-----HHH-HHHHHHHHHHHhcCChh
Q 015951          182 DTDIRKISAWILGKASQNNPLVQKQVLEL-----------GALSKLMKMVKSSF-----VEE-AVKALYTVSSLIRNNLA  244 (397)
Q Consensus       182 ~~~ir~~Aa~vLg~~aqNNp~~Q~~vl~~-----------g~lp~Ll~LL~s~~-----~~v-~~kAl~ALS~LiR~~~~  244 (397)
                      .-++|..|+.|+..-+.+|+..|..|++.           .....|++-|-+.+     +.. --.|...++-++++++.
T Consensus        51 ~f~lR~AA~~c~kay~~~N~~~q~~~l~~~i~~~~~~~~~~~~~nl~~~Ll~~~~~~~~dpy~~wfAa~il~hll~dn~~  130 (312)
T PF04869_consen   51 PFDLRCAALYCFKAYFYNNEEGQTAFLSTLIPSYASGNSDDPIANLLTALLDYDSDLSLDPYRCWFAAVILMHLLRDNPE  130 (312)
T ss_dssp             -HHHHHHHHHHHHHHHTT-HHHHHHHHHTTSSTT--SS--SSSS-HHHHHT------SS-HHHHHHHHHHHHHHHTT-HH
T ss_pred             chHHHHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCcccchhhHHHHHHHHhhccccCCHHHHHHHHHHHHHHHhcCHH
Confidence            67899999999999999999999999985           11223444443111     223 34789999999999999


Q ss_pred             cHHHHHhc------Cc------HHHHHHhhcCC---CccHHHHHHHHHHHHHHhhchhccCCCCcchhHHhCCcHHHHHH
Q 015951          245 GQEMFYVE------AG------DLMLQDILGNS---SFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVD  309 (397)
Q Consensus       245 ~~~~f~~~------gG------i~~L~~lL~s~---~~d~klr~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~  309 (397)
                      +++....-      .|      ++.+..+|...   +.+.+++.--+.+|.--+.+    .......++.+.+-++.|++
T Consensus       131 ~Ke~al~V~~~~~~~ge~~vtliq~v~~lL~~~l~~~~d~ri~igyL~LL~~WL~e----~p~AV~~FL~~~s~l~~Li~  206 (312)
T PF04869_consen  131 AKEQALRVTEGDESSGEEPVTLIQTVSELLIASLRRNSDPRIQIGYLMLLIVWLFE----CPDAVNDFLSEGSNLQSLIE  206 (312)
T ss_dssp             HHHHHTT--EE--STTS--EEHHHHHHHHTTT----T--HHHHHHHHHHHHHHHTT-----HHHHHHHHCSTTHHHHHHH
T ss_pred             HHHHHHcccCCCCCCCCCcccHHHHHHHHHHhhhhcCCchhHHHHHHHHHHHHHhC----CHHHHHHHHcCcchHHHHHH
Confidence            87776432      22      33455555441   34667776666666665542    12234444555678999998


Q ss_pred             hccC---CChHHHHHHHHHHHHHhc
Q 015951          310 LTAS---ADLDLQEKALAAIKNLLQ  331 (397)
Q Consensus       310 lL~~---~d~dv~E~aL~aL~~L~~  331 (397)
                      ....   .++-++=-++..|+-+..
T Consensus       207 ~~~~~~~~~~~VqGL~A~LLGicye  231 (312)
T PF04869_consen  207 FSNQSSSEDVLVQGLCAFLLGICYE  231 (312)
T ss_dssp             HHS--TCCCHHHHHHHHHHHHHHHH
T ss_pred             HhhcCCCCcchHHHHHHHHHHHHHH
Confidence            7533   255555555555555544

p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the head region. The head region is highly conserved, but its function is unknown. It does not seem to be essential for vesicle tethering []. The N-terminal part of the head region contains context-detected Armadillo/beta-catenin-like repeats.; GO: 0006886 intracellular protein transport, 0048280 vesicle fusion with Golgi apparatus, 0000139 Golgi membrane, 0005737 cytoplasm; PDB: 2W3C_A 3GRL_A 3GQ2_A.

>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]

Probab=87.39  E-value=32  Score=38.37  Aligned_cols=191  Identities=10%  Similarity=-0.025  Sum_probs=105.6

Q ss_pred             HHHHHHHHhhCCCCCHHHHHHHHHHHHhccCCCCchhHHHhcCCHHHHHHhcC-CCCHHHHHHHHHHHHHHhcCChHHHH
Q 015951          127 LIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLN-HPDTDIRKISAWILGKASQNNPLVQK  205 (397)
Q Consensus       127 lmk~~i~~L~~~~~s~e~k~~AL~~L~~Lve~iDnA~~~~~lGGl~~Li~lL~-s~~~~ir~~Aa~vLg~~aqNNp~~Q~  205 (397)
                      .|..++.-+..+  +.|-|...|..+..||.-.-.-..+....-+|.+....- ...+.=|..--.++-+.+    ..-+
T Consensus       637 vmlil~rEf~sP--DeemkkivLKVv~qcc~t~Gv~~~y~r~dilp~ff~~fw~rrmA~drr~ykqlv~ttv----~ia~  710 (1172)
T KOG0213|consen  637 VMLILIREFGSP--DEEMKKIVLKVVKQCCATDGVEPAYIRFDILPEFFFSFWGRRMALDRRNYKQLVDTTV----EIAA  710 (1172)
T ss_pred             HHHHHHHhhCCC--hHHHHHHHHHHHHHHhcccCCCHHHHhhhhhHHHHhhhhhhhhhccccchhhHHHHHH----HHHH
Confidence            477777766655  567888999999998865444445555556666654321 110000100011111111    0111


Q ss_pred             HHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChh-cHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhh
Q 015951          206 QVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLA-GQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAK  284 (397)
Q Consensus       206 ~vl~~g~lp~Ll~LL~s~~~~v~~kAl~ALS~LiR~~~~-~~~~f~~~gGi~~L~~lL~s~~~d~klr~kA~~lL~~L~~  284 (397)
                      ++-..-.+..++.=+.++++..|.-+..+++.++..-+. ...+-.+.--+..+...++....+..+-.+...++.+=..
T Consensus       711 KvG~~~~v~R~v~~lkde~e~yrkm~~etv~ri~~~lg~~diderleE~lidgil~Afqeqtt~d~vml~gfg~V~~~lg  790 (1172)
T KOG0213|consen  711 KVGSDPIVSRVVLDLKDEPEQYRKMVAETVSRIVGRLGAADIDERLEERLIDGILYAFQEQTTEDSVMLLGFGTVVNALG  790 (1172)
T ss_pred             HhCchHHHHHHhhhhccccHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHhcccchhhhhhhHHHHHHHHh
Confidence            111122456666667777888888888888887754322 1222223333444555566443344455555555554331


Q ss_pred             chhccCCCCcchhHHhCCcHHHHHHhccCCChHHHHHHHHHHHHHhcC
Q 015951          285 CQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQL  332 (397)
Q Consensus       285 ~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~dv~E~aL~aL~~L~~~  332 (397)
                             ...++.+  .-+|..+...|++..++++.+|+..+..++..
T Consensus       791 -------~r~kpyl--pqi~stiL~rLnnksa~vRqqaadlis~la~V  829 (1172)
T KOG0213|consen  791 -------GRVKPYL--PQICSTILWRLNNKSAKVRQQAADLISSLAKV  829 (1172)
T ss_pred             -------hccccch--HHHHHHHHHHhcCCChhHHHHHHHHHHHHHHH
Confidence                   1122222  12455667789999999999999999888843

>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=87.22  E-value=8.3  Score=42.81  Aligned_cols=160  Identities=13%  Similarity=0.130  Sum_probs=105.3

Q ss_pred             HHHHHHHHHHHhccCCCCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCcHHHHHHhhcC
Q 015951          143 EDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKS  222 (397)
Q Consensus       143 e~k~~AL~~L~~Lve~iDnA~~~~~lGGl~~Li~lL~s~~~~ir~~Aa~vLg~~aqNNp~~Q~~vl~~g~lp~Ll~LL~s  222 (397)
                      ..|..|+..+-.++-.=+++.+     -+|.++....+.+.+||...--.|-.-|.++|...     .=-|..+=+-|.+
T Consensus        50 ~~KleAmKRIia~iA~G~dvS~-----~Fp~VVKNVaskn~EVKkLVyvYLlrYAEeqpdLA-----LLSIntfQk~L~D  119 (968)
T KOG1060|consen   50 SLKLEAMKRIIALIAKGKDVSL-----LFPAVVKNVASKNIEVKKLVYVYLLRYAEEQPDLA-----LLSINTFQKALKD  119 (968)
T ss_pred             HHHHHHHHHHHHHHhcCCcHHH-----HHHHHHHHhhccCHHHHHHHHHHHHHHhhcCCCce-----eeeHHHHHhhhcC
Confidence            5688888888776655444443     46778888888888888877777776666655211     1236666777888


Q ss_pred             CCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHHhCC
Q 015951          223 SFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRF  302 (397)
Q Consensus       223 ~~~~v~~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klr~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g  302 (397)
                      +++.+|.-|+.++|+| |-.  ....+    .+-.+.++..++  .+.+|..|+.+|--|-+     .+++....+    
T Consensus       120 pN~LiRasALRvlSsI-Rvp--~IaPI----~llAIk~~~~D~--s~yVRk~AA~AIpKLYs-----Ld~e~k~qL----  181 (968)
T KOG1060|consen  120 PNQLIRASALRVLSSI-RVP--MIAPI----MLLAIKKAVTDP--SPYVRKTAAHAIPKLYS-----LDPEQKDQL----  181 (968)
T ss_pred             CcHHHHHHHHHHHHhc-chh--hHHHH----HHHHHHHHhcCC--cHHHHHHHHHhhHHHhc-----CChhhHHHH----
Confidence            8899999999999997 421  11111    122334555555  67899999999998875     345544433    


Q ss_pred             cHHHHHHhccCCChHHHHHHHHHHHHHhc
Q 015951          303 FLKSVVDLTASADLDLQEKALAAIKNLLQ  331 (397)
Q Consensus       303 ~v~~Lv~lL~~~d~dv~E~aL~aL~~L~~  331 (397)
                       +..+-.+|...++.|.-.|+.|...+..
T Consensus       182 -~e~I~~LLaD~splVvgsAv~AF~evCP  209 (968)
T KOG1060|consen  182 -EEVIKKLLADRSPLVVGSAVMAFEEVCP  209 (968)
T ss_pred             -HHHHHHHhcCCCCcchhHHHHHHHHhch
Confidence             3445556676677777777766665543

>KOG1788 consensus Uncharacterized conserved protein [Function unknown]

Probab=87.10  E-value=1  Score=51.12  Aligned_cols=126  Identities=20%  Similarity=0.227  Sum_probs=87.2

Q ss_pred             HHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHHhCCcHHHHHHhc
Q 015951          232 LYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLT  311 (397)
Q Consensus       232 l~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klr~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL  311 (397)
                      --+|-++++++..++..|.+++|..+++.++-++    .-|.-...+++.|...     ++..    +.+..+-++|+.|
T Consensus       663 wDcLisllKnnteNqklFreanGvklilpflind----ehRSslLrivscLitv-----dpkq----vhhqelmalVdtL  729 (2799)
T KOG1788|consen  663 WDCLISLLKNNTENQKLFREANGVKLILPFLIND----EHRSSLLRIVSCLITV-----DPKQ----VHHQELMALVDTL  729 (2799)
T ss_pred             HHHHHHHHhccchhhHHHHhhcCceEEEEeeech----HHHHHHHHHHHHHhcc-----Cccc----ccHHHHHHHHHHH
Confidence            3467789999999999999999999999998654    2466777788888752     3321    2334556677777


Q ss_pred             cCC------------ChHHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHHHH--HhHHhhhhhhhhhhH
Q 015951          312 ASA------------DLDLQEKALAAIKNLLQLRTTEALVLKDFCGLDTALERLRQ--QLQEVMLEEDQRDYA  370 (397)
Q Consensus       312 ~~~------------d~dv~E~aL~aL~~L~~~~~~~r~~~~~~~gL~~~L~~Lr~--~~~~l~~~e~~~~~~  370 (397)
                      +++            ..+.....+.+++.....+...+.+|++.+|+..++.+|.-  ...+++.+.|+.-|.
T Consensus       730 ksgmvt~IsgeqyklhfsllcdlmGalwrivgvngsaqrvFgeatGFslLlttLhtfqgftelhdesDlcvyi  802 (2799)
T KOG1788|consen  730 KSGMVTRISGEQYKLHFSLLCDLMGALWRIVGVNGSAQRVFGEATGFSLLLTTLHTFQGFTELHDESDLCVYI  802 (2799)
T ss_pred             HhcceeccchhHHHHHHHHHHHHHHHHHHHHccCchheeehhccccHHHHHHHHHHhccchhcCCchhhhhHH
Confidence            652            23556667888999988777788999999997655554431  245565555444444

>PF08167 RIX1: rRNA processing/ribosome biogenesis

Probab=87.03  E-value=8.6  Score=34.52  Aligned_cols=108  Identities=15%  Similarity=0.098  Sum_probs=73.8

Q ss_pred             HHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcC--cHHHHHHhhcCCC-HHHHHHHHHHHHH---HhcCChh
Q 015951          171 LSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELG--ALSKLMKMVKSSF-VEEAVKALYTVSS---LIRNNLA  244 (397)
Q Consensus       171 l~~Li~lL~s~~~~ir~~Aa~vLg~~aqNNp~~Q~~vl~~g--~lp~Ll~LL~s~~-~~v~~kAl~ALS~---LiR~~~~  244 (397)
                      +..+..+|++.++.-|+.++..++..+++++  .+.+.+++  .+..|+++|+..+ ..+...|+.+++.   .++++|.
T Consensus        27 ~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~--~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~~p~  104 (165)
T PF08167_consen   27 VTRINSLLQSKSAYSRWAGLCLLKVTVEQCS--WEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRGKPT  104 (165)
T ss_pred             HHHHHHHhCCCChhhHHHHHHHHHHHHHHhh--HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCc
Confidence            4456689999999999999999999999874  34454443  5899999998855 4556666666665   4567777


Q ss_pred             cHHHHHhcCc---HHHHHHhhcCCCccHHHHHHHHHHHHHHhh
Q 015951          245 GQEMFYVEAG---DLMLQDILGNSSFEIRLHRKAVSLVGDLAK  284 (397)
Q Consensus       245 ~~~~f~~~gG---i~~L~~lL~s~~~d~klr~kA~~lL~~L~~  284 (397)
                      -..++.....   ++.++.++++    ......++.++..+..
T Consensus       105 l~Rei~tp~l~~~i~~ll~l~~~----~~~~~~~l~~L~~ll~  143 (165)
T PF08167_consen  105 LTREIATPNLPKFIQSLLQLLQD----SSCPETALDALATLLP  143 (165)
T ss_pred             hHHHHhhccHHHHHHHHHHHHhc----cccHHHHHHHHHHHHH
Confidence            6666654432   3333333332    1356678888888775

>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]

Probab=87.00  E-value=5.1  Score=38.38  Aligned_cols=98  Identities=14%  Similarity=0.163  Sum_probs=72.8

Q ss_pred             HHHHHHHHHHhccCCCCchhHHHhcCCHHHHH-HhcC-----CCCHHHHHHHHHHHHHHhcCCh-HHHHHHHHcCcHHHH
Q 015951          144 DSQRALQELLILVEPIDNANDLSKLGGLSVLV-GQLN-----HPDTDIRKISAWILGKASQNNP-LVQKQVLELGALSKL  216 (397)
Q Consensus       144 ~k~~AL~~L~~Lve~iDnA~~~~~lGGl~~Li-~lL~-----s~~~~ir~~Aa~vLg~~aqNNp-~~Q~~vl~~g~lp~L  216 (397)
                      ...+||.-|+-++...+....|.+.. +|..+ ++|+     ++.+-+|..+..+||.+++|.. .+-........+|.+
T Consensus       116 RvcnaL~lLQclaShPetk~~Fl~Ah-iplflypfLntss~~~~fEyLRltsLGVIgaLvkNdsq~vi~fLltTeivPLc  194 (315)
T COG5209         116 RVCNALNLLQCLASHPETKKVFLDAH-IPLFLYPFLNTSSSNSKFEYLRLTSLGVIGALVKNDSQYVIKFLLTTEIVPLC  194 (315)
T ss_pred             HHHHHHHHHHHHhcCcchheeeeecc-cceeeHhhhhccccCCccceeeehHHHHHHHHHhCCCHHHHHHHHhhhHHHHH
Confidence            34578888888888888877777653 34333 5553     2456799999999999999864 455555667899999


Q ss_pred             HHhhcCCCHHHHHHHHHHHHHHhcCC
Q 015951          217 MKMVKSSFVEEAVKALYTVSSLIRNN  242 (397)
Q Consensus       217 l~LL~s~~~~v~~kAl~ALS~LiR~~  242 (397)
                      +++...+++--+.-|++-+.-++.+.
T Consensus       195 LrIme~gSElSktvaifI~qkil~dD  220 (315)
T COG5209         195 LRIMELGSELSKTVAIFIFQKILGDD  220 (315)
T ss_pred             HHHHHhhhHHHHHHHHHHHHHHhccc
Confidence            99999988766777888777776554

>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins

Probab=86.96  E-value=7.2  Score=34.29  Aligned_cols=92  Identities=12%  Similarity=0.131  Sum_probs=69.0

Q ss_pred             HHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHHhCCcHHHHH
Q 015951          229 VKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVV  308 (397)
Q Consensus       229 ~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klr~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv  308 (397)
                      ....-.|+-+++..+.+..     .++..|..-|+++  ++.++..|+.+|-.++.    +.++.+...+.+..++..++
T Consensus        19 w~~ileicD~In~~~~~~k-----~a~rai~krl~~~--n~~v~l~AL~LLe~~vk----NCG~~fh~evas~~Fl~el~   87 (139)
T cd03567          19 WEAIQAFCEQINKEPEGPQ-----LAVRLLAHKIQSP--QEKEALQALTVLEACMK----NCGERFHSEVGKFRFLNELI   87 (139)
T ss_pred             HHHHHHHHHHHHcCCccHH-----HHHHHHHHHHcCC--CHHHHHHHHHHHHHHHH----HcCHHHHHHHHhHHHHHHHH
Confidence            4455666666665543322     3566677778876  56789999999999986    46677888888899999999


Q ss_pred             HhccC------CChHHHHHHHHHHHHHhc
Q 015951          309 DLTAS------ADLDLQEKALAAIKNLLQ  331 (397)
Q Consensus       309 ~lL~~------~d~dv~E~aL~aL~~L~~  331 (397)
                      .++..      .+..|+++++..+..-+.
T Consensus        88 kl~~~k~~~~~~~~~Vk~kil~li~~W~~  116 (139)
T cd03567          88 KLVSPKYLGSRTSEKVKTKIIELLYSWTL  116 (139)
T ss_pred             HHhccccCCCCCCHHHHHHHHHHHHHHHH
Confidence            99963      478999999988877663

The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.

>PF01365 RYDR_ITPR: RIH domain; InterPro: IPR000699 Ryanodine and Inositol 1,4,5-trisphosphate (IP3) receptors are intracellular Ca2+-release channels

Probab=86.71  E-value=2.7  Score=38.99  Aligned_cols=95  Identities=15%  Similarity=0.165  Sum_probs=38.8

Q ss_pred             HHHHHHHHHHHHHHhcCChHHHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhh
Q 015951          183 TDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDIL  262 (397)
Q Consensus       183 ~~ir~~Aa~vLg~~aqNNp~~Q~~vl~~g~lp~Ll~LL~s~~~~v~~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL  262 (397)
                      ..+-..+..+|...|++|++.|..+.++  ++.++..+.......-.-+...+.++.++|+.....+.+.. +..++.++
T Consensus        75 ~~l~~~~~~lL~~f~~~n~~NQ~~l~~~--~~~l~~~~~~~~~~~~~~~~d~l~~i~~dN~~L~~~i~e~~-I~~~i~ll  151 (207)
T PF01365_consen   75 KELFRLCYRLLRQFCRGNRENQKYLFKH--LDFLISIFMQLQIGYGLGALDVLTEIFRDNPELCESISEEH-IEKFIELL  151 (207)
T ss_dssp             HHHHHHHHHHHHHHHTT-HHHHHHHHHH--HH-----HHCCCH-TTHHHHHHHHHHHTT---------------------
T ss_pred             HHHHHHHHHHHHHHHHhCHHHHHHHHHH--HhHHHHHHHHhhccCCchHHHHHHHHHHCcHHHHHHhhHHH-HHHHHHHH
Confidence            4677899999999999999999999986  55444444433333334567778889999999888887665 88889988


Q ss_pred             cCCCccHHHHHHHHHHHHHHhh
Q 015951          263 GNSSFEIRLHRKAVSLVGDLAK  284 (397)
Q Consensus       263 ~s~~~d~klr~kA~~lL~~L~~  284 (397)
                      ...+    -+.+-..+++.++.
T Consensus       152 ~~~g----r~~~~L~~L~~lc~  169 (207)
T PF01365_consen  152 RKHG----RQPRYLDFLSSLCV  169 (207)
T ss_dssp             ----------------------
T ss_pred             HHcC----CChHHHHHHhhhcc
Confidence            8632    23456777888875

They become activated upon binding of their respective ligands, Ca2+ and IP3, opening an intrgral Ca2+ channel. Ryanodine receptor activation is a key component of muscular contraction, their activation allowing release of Ca2+ from the sarcoplasmic reticulum. Mutations in the ryanodine receptor lead to malignant hyperthermia susceptibility the and central core disease of muscle.; GO: 0005262 calcium channel activity, 0070588 calcium ion transmembrane transport, 0016020 membrane; PDB: 1N4K_A 2XOA_A 3UJ0_B 3UJ4_A 3T8S_A.

>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]

Probab=86.02  E-value=2  Score=45.08  Aligned_cols=174  Identities=16%  Similarity=0.156  Sum_probs=93.6

Q ss_pred             HHHHHHHHhccCCCCchhHHHh-cCCHHHHHHhcCCCCHHHHHHHHHHHHHHhc----C--ChHHHHHHHHcCcHHHHHH
Q 015951          146 QRALQELLILVEPIDNANDLSK-LGGLSVLVGQLNHPDTDIRKISAWILGKASQ----N--NPLVQKQVLELGALSKLMK  218 (397)
Q Consensus       146 ~~AL~~L~~Lve~iDnA~~~~~-lGGl~~Li~lL~s~~~~ir~~Aa~vLg~~aq----N--Np~~Q~~vl~~g~lp~Ll~  218 (397)
                      ..|+..+.-+|-..-.+.+..- ......++..|.+..-..|..|+|.+|++.-    |  ||..+..=...-.|.++++
T Consensus       409 ~aA~Ra~~VyVLHp~lr~d~~fv~~aa~~il~sl~d~~ln~r~KaawtlgnITdAL~~~~Ps~~s~~eR~sg~ll~~~~~  488 (728)
T KOG4535|consen  409 AAASRALGVYVLHPCLRQDVIFVADAANAILMSLEDKSLNVRAKAAWSLGNITDALIVNMPTPDSFQERFSGLLLLKMLR  488 (728)
T ss_pred             HHHHhhceeEEeccchhhhHHHHHHHHHHHHHHhhhHhHhHHHHHHHHhhhhHHHHHcCCCCchHHHHHHHHHHHHHHHH
Confidence            3455555555543333333221 2344445555666677899999999999873    3  4444433332234566666


Q ss_pred             hhcCC---CHHHHHHHHHHHHHHhcCChh----cHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCC
Q 015951          219 MVKSS---FVEEAVKALYTVSSLIRNNLA----GQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMH  291 (397)
Q Consensus       219 LL~s~---~~~v~~kAl~ALS~LiR~~~~----~~~~f~~~gGi~~L~~lL~s~~~d~klr~kA~~lL~~L~~~~l~~~~  291 (397)
                      .....   ...|+..|..||+++..--.+    +... ...+.+..+...-..+ ...++|-+|+.+++||..+      
T Consensus       489 ~A~~~~Ad~dkV~~navraLgnllQvlq~i~~~~~~e-~~~~~~~~l~~~v~~~-~~~kV~WNaCya~gNLfkn------  560 (728)
T KOG4535|consen  489 SAIEASADKDKVKSNAVRALGNLLQFLQPIEKPTFAE-IIEESIQALISTVLTE-AAMKVRWNACYAMGNLFKN------  560 (728)
T ss_pred             HHHHhhhhhhhhhhHHHHHHhhHHHHHHHhhhccHHH-HHHHHHHhcccceecc-cccccchHHHHHHHHhhcC------
Confidence            55432   346888899999887542111    1111 1122222222222222 2567999999999999863      


Q ss_pred             CCcchhHHhCCcHHHH----HHhcc-CCChHHHHHHHHHHHHH
Q 015951          292 KVEPPLFRDRFFLKSV----VDLTA-SADLDLQEKALAAIKNL  329 (397)
Q Consensus       292 ~~~~~~l~~~g~v~~L----v~lL~-~~d~dv~E~aL~aL~~L  329 (397)
                      +...  +.+..|-+.+    ..++. ..+-+++-+|+.+|..-
T Consensus       561 ~a~~--lq~~~wA~~~F~~L~~Lv~~~~NFKVRi~AA~aL~vp  601 (728)
T KOG4535|consen  561 PALP--LQTAPWASQAFNALTSLVTSCKNFKVRIRAAAALSVP  601 (728)
T ss_pred             cccc--ccCCCchHHHHHHHHHHHHHhccceEeehhhhhhcCC
Confidence            3221  3344443333    33333 24667777777655443

>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D

Probab=85.84  E-value=33  Score=34.79  Aligned_cols=83  Identities=13%  Similarity=0.176  Sum_probs=56.5

Q ss_pred             CCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCcHHHHHHhhcCCCHH-HHHHHHHHHHHHhcCChhcHHHHHhcCcHHHH
Q 015951          180 HPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVE-EAVKALYTVSSLIRNNLAGQEMFYVEAGDLML  258 (397)
Q Consensus       180 s~~~~ir~~Aa~vLg~~aqNNp~~Q~~vl~~g~lp~Ll~LL~s~~~~-v~~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L  258 (397)
                      +....+|..++--|++-+. +|..+..|..+|....+++.+...... .-.-++.++-.++.........+.+.+-..++
T Consensus        33 ~~~~s~Rr~sll~La~K~~-~~~Fr~~~ra~g~~~~l~~~l~~~~~d~~~~l~~a~i~~~l~~d~~~~~l~~~~~~~~ll  111 (361)
T PF07814_consen   33 SSSSSVRRSSLLELASKCA-DPQFRRQFRAHGLVKRLFKALSDAPDDDILALATAAILYVLSRDGLNMHLLLDRDSLRLL  111 (361)
T ss_pred             CCCccHHHHHHHHHHHHhC-CHHHHHHHHHcCcHHHHHHHhccccchHHHHHHHHHHHHHHccCCcchhhhhchhHHHHH
Confidence            3466899999999999997 689999999999999999999654432 33333333333333333444455555666676


Q ss_pred             HHhhc
Q 015951          259 QDILG  263 (397)
Q Consensus       259 ~~lL~  263 (397)
                      ..++.
T Consensus       112 ~~Ll~  116 (361)
T PF07814_consen  112 LKLLK  116 (361)
T ss_pred             HHHhc
Confidence            77776

melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants.

>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein

Probab=85.78  E-value=18  Score=31.70  Aligned_cols=63  Identities=11%  Similarity=0.064  Sum_probs=50.0

Q ss_pred             CCCHHHHHHHHHHHHHHhcCC-hHHHHHHHHcCcHHH-HHHhhcCC---CHHHHHHHHHHHHHHhcCC
Q 015951          180 HPDTDIRKISAWILGKASQNN-PLVQKQVLELGALSK-LMKMVKSS---FVEEAVKALYTVSSLIRNN  242 (397)
Q Consensus       180 s~~~~ir~~Aa~vLg~~aqNN-p~~Q~~vl~~g~lp~-Ll~LL~s~---~~~v~~kAl~ALS~LiR~~  242 (397)
                      +.++.++..|..+|-++++|. +.++..+...+.+.. |++++...   +..|+.+.+.-|-+-...+
T Consensus        50 ~~n~~v~l~aL~LLe~~vkNCG~~fh~eiask~Fl~e~L~~~i~~~~~~~~~Vk~kil~li~~W~~~f  117 (141)
T cd03565          50 NKNHKEVMLTLTVLETCVKNCGHRFHVLVAKKDFIKDVLVKLINPKNNPPTIVQEKVLALIQAWADAF  117 (141)
T ss_pred             CCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHhhhHHHHHHHcccCCCcHHHHHHHHHHHHHHHHHh
Confidence            468899999999999999997 478888888899987 99999742   3478888877776655443

The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.

>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []

Probab=85.41  E-value=6.1  Score=42.57  Aligned_cols=181  Identities=13%  Similarity=0.104  Sum_probs=92.0

Q ss_pred             HHHHHHHHHhcCCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhccCCCCchhHHHhcCCHHHHHHhcCC----CCHH
Q 015951          109 QMEIKELMEKLKTPSDAQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNH----PDTD  184 (397)
Q Consensus       109 ~~~L~ea~~~~~~~~d~~lmk~~i~~L~~~~~s~e~k~~AL~~L~~Lve~iDnA~~~~~lGGl~~Li~lL~s----~~~~  184 (397)
                      +.++-+++-..|.+.-+..|++.   +.+...+..+....+-.|...+...+  .     ..+..+..++++    .++.
T Consensus       381 r~~~lDal~~aGT~~av~~i~~~---I~~~~~~~~ea~~~l~~l~~~~~~Pt--~-----e~l~~l~~L~~~~~~~~~~~  450 (618)
T PF01347_consen  381 RKIFLDALPQAGTNPAVKFIKDL---IKSKKLTDDEAAQLLASLPFHVRRPT--E-----ELLKELFELAKSPKVKNSPY  450 (618)
T ss_dssp             HHHHHHHHHHH-SHHHHHHHHHH---HHTT-S-HHHHHHHHHHHHHT-------H-----HHHHHHHHHHT-HHHHT-HH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHH---HHcCCCCHHHHHHHHHHHHhhcCCCC--H-----HHHHHHHHHHhCccccCChh
Confidence            34444555444443333333333   33455555555555666655552222  1     123334445544    4677


Q ss_pred             HHHHHHHHHHHHhcCChHHHH-----------HHHHcCcHHHHHHhhc----CCCHHHHHHHHHHHHHHhcCChhcHHHH
Q 015951          185 IRKISAWILGKASQNNPLVQK-----------QVLELGALSKLMKMVK----SSFVEEAVKALYTVSSLIRNNLAGQEMF  249 (397)
Q Consensus       185 ir~~Aa~vLg~~aqNNp~~Q~-----------~vl~~g~lp~Ll~LL~----s~~~~v~~kAl~ALS~LiR~~~~~~~~f  249 (397)
                      ++..|.-.+|+++..  .|..           .......++.|...+.    ..+...+..++.||+|+  +++.     
T Consensus       451 l~~ta~L~~~~lv~~--~c~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~--g~~~-----  521 (618)
T PF01347_consen  451 LRETALLSLGSLVHK--YCVNSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVYLKALGNL--GHPE-----  521 (618)
T ss_dssp             HHHHHHHHHHHHHHH--HHTT-----------SS--GGGTHHHHHHHHHHHHTT-HHHHHHHHHHHHHH--T-GG-----
T ss_pred             HHHHHHHHHHHHhCc--eeecccccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHHHHHhhcc--CCch-----
Confidence            888888888887742  1222           1222346777777666    23346688899999998  3443     


Q ss_pred             HhcCcHHHHHHhhcCC-CccHHHHHHHHHHHHHHhhchhccCCCCcchhHHhCCcHHHHHHhccC--CChHHHHHHHHH
Q 015951          250 YVEAGDLMLQDILGNS-SFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTAS--ADLDLQEKALAA  325 (397)
Q Consensus       250 ~~~gGi~~L~~lL~s~-~~d~klr~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~--~d~dv~E~aL~a  325 (397)
                          .++.|..++.+. ..+..+|..|++++..++..     .+        ..+.+.+..+..+  .++++|-.|...
T Consensus       522 ----~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~~~-----~~--------~~v~~~l~~I~~n~~e~~EvRiaA~~~  583 (618)
T PF01347_consen  522 ----SIPVLLPYIEGKEEVPHFIRVAAIQALRRLAKH-----CP--------EKVREILLPIFMNTTEDPEVRIAAYLI  583 (618)
T ss_dssp             ----GHHHHHTTSTTSS-S-HHHHHHHHHTTTTGGGT------H--------HHHHHHHHHHHH-TTS-HHHHHHHHHH
T ss_pred             ----hhHHHHhHhhhccccchHHHHHHHHHHHHHhhc-----Cc--------HHHHHHHHHHhcCCCCChhHHHHHHHH
Confidence                445556666554 34567888999988877531     11        1223344444433  367888777643

Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.

>smart00638 LPD_N Lipoprotein N-terminal Domain

Probab=85.29  E-value=41  Score=36.05  Aligned_cols=182  Identities=14%  Similarity=0.124  Sum_probs=100.2

Q ss_pred             HHHHHHHHhcCCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhccCCCCchhHHHhcCCHHHHHHhcCC----CCHHH
Q 015951          110 MEIKELMEKLKTPSDAQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNH----PDTDI  185 (397)
Q Consensus       110 ~~L~ea~~~~~~~~d~~lmk~~i~~L~~~~~s~e~k~~AL~~L~~Lve~iDnA~~~~~lGGl~~Li~lL~s----~~~~i  185 (397)
                      .++.+++...|.+.-   ++-+.+.+.+...+..+...++-.+...+...+.       ..+..+..++.+    +++-+
T Consensus       344 ~~~~Dal~~~GT~~a---~~~i~~~i~~~~~~~~ea~~~~~~~~~~~~~Pt~-------~~l~~l~~l~~~~~~~~~~~l  413 (574)
T smart00638      344 RIFLDAVAQAGTPPA---LKFIKQWIKNKKITPLEAAQLLAVLPHTARYPTE-------EILKALFELAESPEVQKQPYL  413 (574)
T ss_pred             HHHHHHHHhcCCHHH---HHHHHHHHHcCCCCHHHHHHHHHHHHHhhhcCCH-------HHHHHHHHHhcCccccccHHH
Confidence            444555544443333   3344445555555655555555555554432221       134445566654    35678


Q ss_pred             HHHHHHHHHHHhc----CChHHHHHHHHcCcHHHHHHhhcC----CCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHH
Q 015951          186 RKISAWILGKASQ----NNPLVQKQVLELGALSKLMKMVKS----SFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLM  257 (397)
Q Consensus       186 r~~Aa~vLg~~aq----NNp~~Q~~vl~~g~lp~Ll~LL~s----~~~~v~~kAl~ALS~LiR~~~~~~~~f~~~gGi~~  257 (397)
                      +..|.-.+|+++.    +++.+...+. ...++.|.+.|..    .+...+.-++-||+|+  +++....         .
T Consensus       414 ~~sa~l~~~~lv~~~c~~~~~~~~~~~-~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~--g~~~~i~---------~  481 (574)
T smart00638      414 RESALLAYGSLVRRYCVNTPSCPDFVL-EELLKYLHELLQQAVSKGDEEEIQLYLKALGNA--GHPSSIK---------V  481 (574)
T ss_pred             HHHHHHHHHHHHHHHhcCCCCCChhhH-HHHHHHHHHHHHHHHhcCCchheeeHHHhhhcc--CChhHHH---------H
Confidence            8888888887663    3443332222 2367777776653    2344567789999987  4454433         3


Q ss_pred             HHHhhc-CCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHHhCCcHHHHHHhccC--CChHHHHHHHHHH
Q 015951          258 LQDILG-NSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTAS--ADLDLQEKALAAI  326 (397)
Q Consensus       258 L~~lL~-s~~~d~klr~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~--~d~dv~E~aL~aL  326 (397)
                      |..++. +...+..+|.-|++++..++..     .+.        .+-+.+..+..+  .++++|-.|..+|
T Consensus       482 l~~~l~~~~~~~~~iR~~Av~Alr~~a~~-----~p~--------~v~~~l~~i~~n~~e~~EvRiaA~~~l  540 (574)
T smart00638      482 LEPYLEGAEPLSTFIRLAAILALRNLAKR-----DPR--------KVQEVLLPIYLNRAEPPEVRMAAVLVL  540 (574)
T ss_pred             HHHhcCCCCCCCHHHHHHHHHHHHHHHHh-----Cch--------HHHHHHHHHHcCCCCChHHHHHHHHHH
Confidence            344443 3334667999999999988742     111        122334444433  4778887777433

>KOG2676 consensus Uncharacterized conserved protein [Function unknown]

Probab=85.25  E-value=1  Score=45.52  Aligned_cols=64  Identities=13%  Similarity=0.049  Sum_probs=55.3

Q ss_pred             HHHHHHHHHhcCChHHHHHHHHcCcHHHHHHhhc--CCCHHHHHHHHHHHHHHhcCChhcHHHHHh
Q 015951          188 ISAWILGKASQNNPLVQKQVLELGALSKLMKMVK--SSFVEEAVKALYTVSSLIRNNLAGQEMFYV  251 (397)
Q Consensus       188 ~Aa~vLg~~aqNNp~~Q~~vl~~g~lp~Ll~LL~--s~~~~v~~kAl~ALS~LiR~~~~~~~~f~~  251 (397)
                      +-.+.||.+|..+|..|+.+.+.||++.++.-..  +.++-++...++|+..++.+|..+|+.+.+
T Consensus       375 Hvir~ia~lcyk~~~~qD~vrel~GvaLIlsncnidD~nPfi~e~sI~c~r~Ll~nN~~NQ~~i~k  440 (478)
T KOG2676|consen  375 HVIRFIAFLCYKFSTAQDLVRELNGVALILSNCNIDDWNPFIREISILCTRLLLQNNIENQKIIGK  440 (478)
T ss_pred             HHHHHHHHHHHhCCchHHHHHhcCCeEEeeccCccCCCChHHHHHHHHHHHHHHhcchhhHHHHhc
Confidence            4667899999999999999999999999997654  334678999999999999999999887654

>KOG2259 consensus Uncharacterized conserved protein [Function unknown]

Probab=85.13  E-value=1  Score=48.77  Aligned_cols=75  Identities=17%  Similarity=0.235  Sum_probs=64.3

Q ss_pred             hhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcC
Q 015951          162 ANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRN  241 (397)
Q Consensus       162 A~~~~~lGGl~~Li~lL~s~~~~ir~~Aa~vLg~~aqNNp~~Q~~vl~~g~lp~Ll~LL~s~~~~v~~kAl~ALS~LiR~  241 (397)
                      +..++..|+.-.+|.-|...--+||..|...++.++++.|..-..     ++..|+.+++++-+.||.+|++||--|..|
T Consensus       366 ~~siI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~ssP~FA~~-----aldfLvDMfNDE~~~VRL~ai~aL~~Is~~  440 (823)
T KOG2259|consen  366 EESIIPSGACGALVHGLEDEFYEVRRAAVASLCSLATSSPGFAVR-----ALDFLVDMFNDEIEVVRLKAIFALTMISVH  440 (823)
T ss_pred             ccccccccccceeeeechHHHHHHHHHHHHHHHHHHcCCCCcHHH-----HHHHHHHHhccHHHHHHHHHHHHHHHHHHH
Confidence            446777788888888888888999999999999999999976654     467799999998889999999999888765

>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]

Probab=85.12  E-value=8.9  Score=36.75  Aligned_cols=187  Identities=18%  Similarity=0.145  Sum_probs=114.6

Q ss_pred             HHHHHHHHHhccCC-CCchhHHHhcCCHHH-HHH-------hcCC-----CCHHHHHHHHHHHHHHhcCChHHHHHHHHc
Q 015951          145 SQRALQELLILVEP-IDNANDLSKLGGLSV-LVG-------QLNH-----PDTDIRKISAWILGKASQNNPLVQKQVLEL  210 (397)
Q Consensus       145 k~~AL~~L~~Lve~-iDnA~~~~~lGGl~~-Li~-------lL~s-----~~~~ir~~Aa~vLg~~aqNNp~~Q~~vl~~  210 (397)
                      |+.||++|..--++ .|.|-.+-..-|++. |++       +|+-     ....=...|..++..++ .+|+.+..|++.
T Consensus        62 kEqaL~EL~rkreq~~dlAl~lW~s~gvmt~LLqEiisvYpiL~p~~l~~~~snRvcnaL~lLQcla-ShPetk~~Fl~A  140 (315)
T COG5209          62 KEQALDELFRKREQSPDLALELWRSDGVMTFLLQEIISVYPILSPSKLDERESNRVCNALNLLQCLA-SHPETKKVFLDA  140 (315)
T ss_pred             HHHHHHHHHHHHhcCCCeeeeehhccchHHHHHHHHHhhhhccCccccCchhhhHHHHHHHHHHHHh-cCcchheeeeec
Confidence            55577777765554 467766666555443 332       2221     12233445666666665 579999999987


Q ss_pred             Cc---HHHHHHhhcCCC--HHHHHHHHHHHHHHhcCChhcHHHHH-hcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhh
Q 015951          211 GA---LSKLMKMVKSSF--VEEAVKALYTVSSLIRNNLAGQEMFY-VEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAK  284 (397)
Q Consensus       211 g~---lp~Ll~LL~s~~--~~v~~kAl~ALS~LiR~~~~~~~~f~-~~gGi~~L~~lL~s~~~d~klr~kA~~lL~~L~~  284 (397)
                      ..   +-+.+...++.+  +-+|..++..|++++++..+-...|. ....++.+.+++..+  +.-.|.-|+|.+.-+.-
T Consensus       141 hiplflypfLntss~~~~fEyLRltsLGVIgaLvkNdsq~vi~fLltTeivPLcLrIme~g--SElSktvaifI~qkil~  218 (315)
T COG5209         141 HIPLFLYPFLNTSSSNSKFEYLRLTSLGVIGALVKNDSQYVIKFLLTTEIVPLCLRIMELG--SELSKTVAIFIFQKILG  218 (315)
T ss_pred             ccceeeHhhhhccccCCccceeeehHHHHHHHHHhCCCHHHHHHHHhhhHHHHHHHHHHhh--hHHHHHHHHHHHHHHhc
Confidence            53   222333333333  34688999999999998765555554 568899999999876  33457778888877653


Q ss_pred             chhccCCCC----cchhHHh----CCcHHHHHH-hccCCChHHHHHHHHHHHHHhcCChHHHHHHH
Q 015951          285 CQLENMHKV----EPPLFRD----RFFLKSVVD-LTASADLDLQEKALAAIKNLLQLRTTEALVLK  341 (397)
Q Consensus       285 ~~l~~~~~~----~~~~l~~----~g~v~~Lv~-lL~~~d~dv~E~aL~aL~~L~~~~~~~r~~~~  341 (397)
                            ++.    .++.+..    ..+...++. +.+.+...+..+++++-..|+.... .|+.++
T Consensus       219 ------dDvGLqYiCqT~eRFyAv~~vln~mv~qlVs~~~~RLlKh~iRcYlRLsd~p~-aR~lL~  277 (315)
T COG5209         219 ------DDVGLQYICQTFERFYAVNLVLNSMVSQLVSLGSTRLLKHAIRCYLRLSDKPH-ARALLS  277 (315)
T ss_pred             ------cchhHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHheeecCCHh-HHHHHh
Confidence                  222    1222211    123333333 3455677888999999888887653 666554

>smart00638 LPD_N Lipoprotein N-terminal Domain

Probab=85.05  E-value=18  Score=38.69  Aligned_cols=177  Identities=14%  Similarity=0.115  Sum_probs=101.7

Q ss_pred             HHHHHHHhcCCCCHHHHHHHHHHHhhCCCCCH--HHHHHHHHHHHhccC----CCCchhHHHhcCCHHHHHHhcC----C
Q 015951          111 EIKELMEKLKTPSDAQLIQIAIDDLNNSTLSL--EDSQRALQELLILVE----PIDNANDLSKLGGLSVLVGQLN----H  180 (397)
Q Consensus       111 ~L~ea~~~~~~~~d~~lmk~~i~~L~~~~~s~--e~k~~AL~~L~~Lve----~iDnA~~~~~lGGl~~Li~lL~----s  180 (397)
                      .+..++..+.. .+.++|+.+.+.+.++....  .-+..|+-.+..+++    +.+.......-.-++.+...|.    .
T Consensus       379 ~~~~~~~~~~~-Pt~~~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~~~  457 (574)
T smart00638      379 LLAVLPHTARY-PTEEILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPDFVLEELLKYLHELLQQAVSK  457 (574)
T ss_pred             HHHHHHHhhhc-CCHHHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHhc
Confidence            34444433223 35888999999888765432  334445555554443    2222212222234555555442    3


Q ss_pred             CCHHHHHHHHHHHHHHhcCChHHHHHHHHcCcHHHHHHhhc-CC--CHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHH
Q 015951          181 PDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVK-SS--FVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLM  257 (397)
Q Consensus       181 ~~~~ir~~Aa~vLg~~aqNNp~~Q~~vl~~g~lp~Ll~LL~-s~--~~~v~~kAl~ALS~LiR~~~~~~~~f~~~gGi~~  257 (397)
                      .+.+-+..+..+||++..  |         ..++.|..++. +.  +..+|..|++||..+...+|..        .-+.
T Consensus       458 ~~~~~~~~~LkaLGN~g~--~---------~~i~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~~p~~--------v~~~  518 (574)
T smart00638      458 GDEEEIQLYLKALGNAGH--P---------SSIKVLEPYLEGAEPLSTFIRLAAILALRNLAKRDPRK--------VQEV  518 (574)
T ss_pred             CCchheeeHHHhhhccCC--h---------hHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCchH--------HHHH
Confidence            566678888999998864  4         34566666665 22  3568999999999887666553        3345


Q ss_pred             HHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHHhCCcHHHHHHhccCC-ChHHHHHH
Q 015951          258 LQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASA-DLDLQEKA  322 (397)
Q Consensus       258 L~~lL~s~~~d~klr~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~-d~dv~E~a  322 (397)
                      |..++.+...+..+|..|..++-..        +|.       ...+..++..+..+ +..|.--+
T Consensus       519 l~~i~~n~~e~~EvRiaA~~~lm~t--------~P~-------~~~l~~ia~~l~~E~~~QV~sfv  569 (574)
T smart00638      519 LLPIYLNRAEPPEVRMAAVLVLMET--------KPS-------VALLQRIAELLNKEPNLQVASFV  569 (574)
T ss_pred             HHHHHcCCCCChHHHHHHHHHHHhc--------CCC-------HHHHHHHHHHHhhcCcHHHHHHh
Confidence            6777777656667777665554432        232       24556666666554 44444333

>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]

Probab=85.03  E-value=2.5  Score=47.43  Aligned_cols=106  Identities=17%  Similarity=0.144  Sum_probs=82.6

Q ss_pred             CHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCcHHHHHHhhcCCC---HHHHHHHHHHHHHHhcCChhcH
Q 015951          170 GLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSF---VEEAVKALYTVSSLIRNNLAGQ  246 (397)
Q Consensus       170 Gl~~Li~lL~s~~~~ir~~Aa~vLg~~aqNNp~~Q~~vl~~g~lp~Ll~LL~s~~---~~v~~kAl~ALS~LiR~~~~~~  246 (397)
                      .+|.|++.|.-++..+|..+..+|.....-.+..+..-+.. .+|.++.+=++.+   ..||.-|+.++..+.|--|...
T Consensus       910 LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~tL~t~~~~T-lvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~  988 (1030)
T KOG1967|consen  910 LLPLLLQALSMPDVIVRVSTLRTIPMLLTESETLQTEHLST-LVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKS  988 (1030)
T ss_pred             HHHHHHHhcCCCccchhhhHhhhhhHHHHhccccchHHHhH-HHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCcc
Confidence            56777899999999999999999999988777777766553 7899988877654   4689999999999999666554


Q ss_pred             HHHHhcCcHHHHHHhhcCCCccHHHHHHHHHH
Q 015951          247 EMFYVEAGDLMLQDILGNSSFEIRLHRKAVSL  278 (397)
Q Consensus       247 ~~f~~~gGi~~L~~lL~s~~~d~klr~kA~~l  278 (397)
                      -.-+.-..+..|..+|.++  ...+|..|+..
T Consensus       989 l~~fr~~Vl~al~k~LdDk--KRlVR~eAv~t 1018 (1030)
T KOG1967|consen  989 LLSFRPLVLRALIKILDDK--KRLVRKEAVDT 1018 (1030)
T ss_pred             cccccHHHHHHhhhccCcH--HHHHHHHHHHH
Confidence            4444566788899999876  34466666544

>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]

Probab=84.85  E-value=1.4  Score=44.15  Aligned_cols=81  Identities=15%  Similarity=0.130  Sum_probs=68.5

Q ss_pred             CchhHHHhc--CCHHHHHHhcCCCCHH-HHHHHHHHHHHHhcCChHHHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHH
Q 015951          160 DNANDLSKL--GGLSVLVGQLNHPDTD-IRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVS  236 (397)
Q Consensus       160 DnA~~~~~l--GGl~~Li~lL~s~~~~-ir~~Aa~vLg~~aqNNp~~Q~~vl~~g~lp~Ll~LL~s~~~~v~~kAl~ALS  236 (397)
                      +|+..|.+-  .-+..|..+|++.++. .-+-||.=|+..+.--|+....+.++|+=..++.|++++++.++-.|+.|+-
T Consensus       345 ~N~d~l~kdny~i~k~L~~~lq~n~~nt~i~vAc~Di~~~Vr~~PE~~~vl~Kyg~k~~im~L~nh~d~~VkfeAl~a~q  424 (432)
T COG5231         345 TNLDMLIKDNYEIVKVLKKYLQSNNPNTWICVACSDIFQLVRASPEINAVLSKYGVKEIIMNLINHDDDDVKFEALQALQ  424 (432)
T ss_pred             hhHHHHhhhhHHHHHHHHHHHhcCCCCceEeeeHhhHHHHHHhCchHHHHHHHhhhHHHHHHHhcCCCchhhHHHHHHHH
Confidence            566666654  3577888999887776 6778999999999999999999999999999999999999999988888887


Q ss_pred             HHhc
Q 015951          237 SLIR  240 (397)
Q Consensus       237 ~LiR  240 (397)
                      .++.
T Consensus       425 ~~i~  428 (432)
T COG5231         425 TCIS  428 (432)
T ss_pred             HHHh
Confidence            6653

>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule)

Probab=84.83  E-value=6.5  Score=33.95  Aligned_cols=92  Identities=21%  Similarity=0.186  Sum_probs=70.0

Q ss_pred             HHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHHhCCcHHHHH
Q 015951          229 VKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVV  308 (397)
Q Consensus       229 ~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klr~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv  308 (397)
                      ......|+-+++..+.+..     .++..|..-|+++  ++.++..|+.++-.++.    +.++.+...+.+..++..++
T Consensus        18 ~~~il~icd~I~~~~~~~k-----~a~raL~krl~~~--n~~vql~AL~lLd~~vk----Ncg~~f~~~i~s~~fl~~l~   86 (133)
T cd03561          18 WALNLELCDLINLKPNGPK-----EAARAIRKKIKYG--NPHVQLLALTLLELLVK----NCGKPFHLQVADKEFLLELV   86 (133)
T ss_pred             HHHHHHHHHHHhCCCCCHH-----HHHHHHHHHHcCC--CHHHHHHHHHHHHHHHH----hCChHHHHHHhhHHHHHHHH
Confidence            4566778888877644333     2456777778876  56789999999999887    35666777777878888899


Q ss_pred             HhccC---CChHHHHHHHHHHHHHhc
Q 015951          309 DLTAS---ADLDLQEKALAAIKNLLQ  331 (397)
Q Consensus       309 ~lL~~---~d~dv~E~aL~aL~~L~~  331 (397)
                      .++..   .+..++++++..+.+...
T Consensus        87 ~l~~~~~~~~~~Vk~kil~ll~~W~~  112 (133)
T cd03561          87 KIAKNSPKYDPKVREKALELILAWSE  112 (133)
T ss_pred             HHhCCCCCCCHHHHHHHHHHHHHHHH
Confidence            99875   488999999998888774

It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me

>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=84.63  E-value=8.5  Score=44.39  Aligned_cols=142  Identities=15%  Similarity=0.153  Sum_probs=101.4

Q ss_pred             cCCHHHHH-HhcC----CCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCcHHHHHHhhc-CCCHHHHHHHHHHHHHHhcC
Q 015951          168 LGGLSVLV-GQLN----HPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVK-SSFVEEAVKALYTVSSLIRN  241 (397)
Q Consensus       168 lGGl~~Li-~lL~----s~~~~ir~~Aa~vLg~~aqNNp~~Q~~vl~~g~lp~Ll~LL~-s~~~~v~~kAl~ALS~LiR~  241 (397)
                      +|-+.|++ ...+    .++|++|..|.-++|.++-    .-..|.+ -.+|.|+.++. ++++-+|..++-|+|-++--
T Consensus       917 Lg~f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~----iSa~fce-s~l~llftimeksp~p~IRsN~VvalgDlav~  991 (1251)
T KOG0414|consen  917 LGRFAPIVVEGCRNPGLFSDPELQAAATLALGKLMC----ISAEFCE-SHLPLLFTIMEKSPSPRIRSNLVVALGDLAVR  991 (1251)
T ss_pred             HHHHHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhh----hhHHHHH-HHHHHHHHHHhcCCCceeeecchheccchhhh
Confidence            35566655 5553    3689999999999999873    1112222 36899999998 55667899999999998877


Q ss_pred             ChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHHhCCcHHHHHHhccCCChHHHHH
Q 015951          242 NLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEK  321 (397)
Q Consensus       242 ~~~~~~~f~~~gGi~~L~~lL~s~~~d~klr~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~dv~E~  321 (397)
                      +|.-.+.+-     +.|-.-|.+.  +..+|+.|.-.+++|...          ..+.-.|.+.-++-+|..++..+.+-
T Consensus       992 fpnlie~~T-----~~Ly~rL~D~--~~~vRkta~lvlshLILn----------dmiKVKGql~eMA~cl~D~~~~Isdl 1054 (1251)
T KOG0414|consen  992 FPNLIEPWT-----EHLYRRLRDE--SPSVRKTALLVLSHLILN----------DMIKVKGQLSEMALCLEDPNAEISDL 1054 (1251)
T ss_pred             cccccchhh-----HHHHHHhcCc--cHHHHHHHHHHHHHHHHh----------hhhHhcccHHHHHHHhcCCcHHHHHH
Confidence            877666553     3455556665  556899999999999852          23445688888888888888888877


Q ss_pred             HHHHHHHHhc
Q 015951          322 ALAAIKNLLQ  331 (397)
Q Consensus       322 aL~aL~~L~~  331 (397)
                      |=.....|+.
T Consensus      1055 Ak~FF~Els~ 1064 (1251)
T KOG0414|consen 1055 AKSFFKELSS 1064 (1251)
T ss_pred             HHHHHHHhhh
Confidence            7744444443

>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]

Probab=84.58  E-value=24  Score=39.83  Aligned_cols=126  Identities=16%  Similarity=0.105  Sum_probs=90.5

Q ss_pred             HHHHHHhhCCCCCHHHHHHHHHHHHhccCCCCchhHHHhcCCHHHHHHhcCCCC----HHHHHHHHHHHHHHhcCChH-H
Q 015951          129 QIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPD----TDIRKISAWILGKASQNNPL-V  203 (397)
Q Consensus       129 k~~i~~L~~~~~s~e~k~~AL~~L~~Lve~iDnA~~~~~lGGl~~Li~lL~s~~----~~ir~~Aa~vLg~~aqNNp~-~  203 (397)
                      -..+.++...+.+|.....+.+-++++++..+|...++. --+|.+++.|..+.    +.+...|+.+|.++..|-|. .
T Consensus       574 P~~i~lF~k~s~DP~V~~~~qd~f~el~q~~~~~g~m~e-~~iPslisil~~~~~~~~~~l~~~aidvLttvvr~tp~pL  652 (1005)
T KOG2274|consen  574 PLTINLFLKYSEDPQVASLAQDLFEELLQIAANYGPMQE-RLIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSPL  652 (1005)
T ss_pred             HHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhhcchHH-HHHHHHHHHHcCcccccCchhhHHHHHHHHHHHhcCCCCc
Confidence            346666666655666666678888888886676666654 48999999998876    89999999999999988543 2


Q ss_pred             HHHHHHcCcHHHHHHhhc-CCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHH
Q 015951          204 QKQVLELGALSKLMKMVK-SSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDL  256 (397)
Q Consensus       204 Q~~vl~~g~lp~Ll~LL~-s~~~~v~~kAl~ALS~LiR~~~~~~~~f~~~gGi~  256 (397)
                      -+-++. -++|++.++.- +++.++-..+--+|++++...++........+|+.
T Consensus       653 ~~~l~~-~~FpaVak~tlHsdD~~tlQ~~~EcLra~Is~~~eq~~t~~~e~g~~  705 (1005)
T KOG2274|consen  653 PNLLIC-YAFPAVAKITLHSDDHETLQNATECLRALISVTLEQLLTWHDEPGHN  705 (1005)
T ss_pred             cHHHHH-HHhHHhHhheeecCChHHHHhHHHHHHHHHhcCHHHHHhhccCCCcc
Confidence            233333 37899998765 44567777888899998887766555555555655

>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus

Probab=84.24  E-value=3.5  Score=37.85  Aligned_cols=69  Identities=16%  Similarity=0.132  Sum_probs=58.7

Q ss_pred             HHHHHHhcCCCCHHHHHHHHHHHHHHhcC---ChHHHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHH
Q 015951          171 LSVLVGQLNHPDTDIRKISAWILGKASQN---NPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQE  247 (397)
Q Consensus       171 l~~Li~lL~s~~~~ir~~Aa~vLg~~aqN---Np~~Q~~vl~~g~lp~Ll~LL~s~~~~v~~kAl~ALS~LiR~~~~~~~  247 (397)
                      |+.++++.-+++..+|..|..+|+.+.+.   ||.        .++|.|+.|..++++.++.+|...+..+...|+.-..
T Consensus        10 l~~Il~~~~~~~~~vr~~Al~~l~~il~qGLvnP~--------~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK~~s~v~   81 (187)
T PF12830_consen   10 LKNILELCLSSDDSVRLAALQVLELILRQGLVNPK--------QCVPTLIALETSPNPSIRSRAYQLLKELHEKHESLVE   81 (187)
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHHHHHHhcCCCChH--------HHHhHhhhhhCCCChHHHHHHHHHHHHHHHHhHHHHH
Confidence            56778888899999999999999999865   662        3799999999999999999999999999877765433

>KOG2032 consensus Uncharacterized conserved protein [Function unknown]

Probab=84.13  E-value=35  Score=36.15  Aligned_cols=119  Identities=18%  Similarity=0.254  Sum_probs=72.7

Q ss_pred             hHHHhcCCHHHHHHhc----CCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCcHHHHH-HhhcCCCHHHHHHHHHHHHH
Q 015951          163 NDLSKLGGLSVLVGQL----NHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLM-KMVKSSFVEEAVKALYTVSS  237 (397)
Q Consensus       163 ~~~~~lGGl~~Li~lL----~s~~~~ir~~Aa~vLg~~aqNNp~~Q~~vl~~g~lp~Ll-~LL~s~~~~v~~kAl~ALS~  237 (397)
                      +.+-+.|.+.-++..|    .+|+..+|..|+.+||+.+..-|.--..... -.+..++ .|.+..+.+|.-.|+.+|-.
T Consensus       248 ~~l~~~~lL~s~~~~la~ka~dp~a~~r~~a~r~L~~~as~~P~kv~th~~-~~ldaii~gL~D~~~~~V~leam~~Lt~  326 (533)
T KOG2032|consen  248 KELDKTGLLGSVLLSLANKATDPSAKSRGMACRGLGNTASGAPDKVRTHKT-TQLDAIIRGLYDDLNEEVQLEAMKCLTM  326 (533)
T ss_pred             ccccccccHHHHHHHHHHhccCchhHHHHHHHHHHHHHhccCcHHHHHhHH-HHHHHHHHHHhcCCccHHHHHHHHHHHH
Confidence            3344777777666544    4578899999999999999885532222222 2334444 44444456776666666665


Q ss_pred             HhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhh
Q 015951          238 LIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAK  284 (397)
Q Consensus       238 LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klr~kA~~lL~~L~~  284 (397)
                      ++-.-..-.-.++=.+..--+..++.+.  +.++|..|.+++..|+-
T Consensus       327 v~~~~~~~~l~~~~l~ialrlR~l~~se--~~~~R~aa~~Lfg~L~~  371 (533)
T KOG2032|consen  327 VLEKASNDDLESYLLNIALRLRTLFDSE--DDKMRAAAFVLFGALAK  371 (533)
T ss_pred             HHHhhhhcchhhhchhHHHHHHHHHHhc--ChhhhhhHHHHHHHHHH
Confidence            5432111122233334555667777775  45688999999999975

>PF14726 RTTN_N: Rotatin, an armadillo repeat protein, centriole functioning

Probab=84.12  E-value=7.1  Score=32.34  Aligned_cols=93  Identities=13%  Similarity=0.102  Sum_probs=66.0

Q ss_pred             HHHHHHHHHHHHHhcCChHHHHHHH-HcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhh
Q 015951          184 DIRKISAWILGKASQNNPLVQKQVL-ELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDIL  262 (397)
Q Consensus       184 ~ir~~Aa~vLg~~aqNNp~~Q~~vl-~~g~lp~Ll~LL~s~~~~v~~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL  262 (397)
                      +||.+|..=|-+=-.++--+-..+. ....+..|+..+..++......++.-|+.+++ +|++...+.+.|+...|.++-
T Consensus         2 EIR~RAL~~I~~Kl~~~Li~~~dl~~~~~Ll~~LleWFnf~~~~~~~~VL~Ll~~L~~-~~~a~~~l~~iG~~~fL~klr   80 (98)
T PF14726_consen    2 EIRVRALESIEFKLEHGLISEEDLVKERLLLKQLLEWFNFPPVPMKEEVLALLLRLLK-SPYAAQILRDIGAVRFLSKLR   80 (98)
T ss_pred             hHHHHHHHHHHHHHHhccccHHHHccHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHh-CcHHHHHHHHccHHHHHHHHH
Confidence            6788887666555545444444444 55678899999998887778888999999877 578888899999999987776


Q ss_pred             cCCCccHHHHHHHHHHH
Q 015951          263 GNSSFEIRLHRKAVSLV  279 (397)
Q Consensus       263 ~s~~~d~klr~kA~~lL  279 (397)
                      ...  +..++...-.++
T Consensus        81 ~~~--~~~~~~~id~il   95 (98)
T PF14726_consen   81 PNV--EPNLQAEIDEIL   95 (98)
T ss_pred             hcC--CHHHHHHHHHHH
Confidence            543  444555444333

>KOG4653 consensus Uncharacterized conserved protein [Function unknown]

Probab=84.07  E-value=59  Score=36.75  Aligned_cols=190  Identities=13%  Similarity=0.080  Sum_probs=122.2

Q ss_pred             HHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhccCCCCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHH
Q 015951          124 DAQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLV  203 (397)
Q Consensus       124 d~~lmk~~i~~L~~~~~s~e~k~~AL~~L~~Lve~iDnA~~~~~lGGl~~Li~lL~s~~~~ir~~Aa~vLg~~aqNNp~~  203 (397)
                      +.+...+++..+.++.+  .-|..++..|..++++-+-+..+..-+.+...+..|++.++=|=-+|...+.++|.-    
T Consensus       725 ~~e~~qeai~sl~d~qv--pik~~gL~~l~~l~e~r~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcev----  798 (982)
T KOG4653|consen  725 DIEPLQEAISSLHDDQV--PIKGYGLQMLRHLIEKRKKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEV----  798 (982)
T ss_pred             cHHHHHHHHHHhcCCcc--cchHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHh----
Confidence            34556667777766643  358889999999999888777888889999999999999999988999888888753    


Q ss_pred             HHHHHHcCcHHHHHH-hhcCCC---HHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHH
Q 015951          204 QKQVLELGALSKLMK-MVKSSF---VEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLV  279 (397)
Q Consensus       204 Q~~vl~~g~lp~Ll~-LL~s~~---~~v~~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klr~kA~~lL  279 (397)
                          .....+|.|.. ..++.+   .+.+-+.=-||..+++--.+-...+.+ --+...+...+++  +...|.-++..+
T Consensus       799 ----y~e~il~dL~e~Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y~~-~Li~tfl~gvrep--d~~~RaSS~a~l  871 (982)
T KOG4653|consen  799 ----YPEDILPDLSEEYLSEKKKLQTDYRLKVGEAILKVAQALGELVFKYKA-VLINTFLSGVREP--DHEFRASSLANL  871 (982)
T ss_pred             ----cchhhHHHHHHHHHhcccCCCccceehHHHHHHHHHHHhccHHHHHHH-HHHHHHHHhcCCc--hHHHHHhHHHHH
Confidence                44678999987 444332   233444446666655543332222222 1122223333444  667899999999


Q ss_pred             HHHhhchhccCCCCcchhHHhCCcHHHHHHhccCC-ChHHHHHHHHHHHHHhcC
Q 015951          280 GDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASA-DLDLQEKALAAIKNLLQL  332 (397)
Q Consensus       280 ~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~-d~dv~E~aL~aL~~L~~~  332 (397)
                      +.||.--    .-..-+++.  .+...++.+.+.+ .+-+|..|...+..+...
T Consensus       872 g~Lcq~~----a~~vsd~~~--ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~~  919 (982)
T KOG4653|consen  872 GQLCQLL----AFQVSDFFH--EVLQLILSLETTDGSVLVRRAAVHLLAELLNG  919 (982)
T ss_pred             HHHHHHH----hhhhhHHHH--HHHHHHHHHHccCCchhhHHHHHHHHHHHHhc
Confidence            9998510    000111222  2344455555554 567888888888887764

>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=83.82  E-value=29  Score=39.47  Aligned_cols=138  Identities=12%  Similarity=0.000  Sum_probs=81.1

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHcCcHHHHHHhhcC------CCHHH--HHHHHHHHHHHh---cCChh---cHHHHHhc
Q 015951          187 KISAWILGKASQNNPLVQKQVLELGALSKLMKMVKS------SFVEE--AVKALYTVSSLI---RNNLA---GQEMFYVE  252 (397)
Q Consensus       187 ~~Aa~vLg~~aqNNp~~Q~~vl~~g~lp~Ll~LL~s------~~~~v--~~kAl~ALS~Li---R~~~~---~~~~f~~~  252 (397)
                      .+|..++-+++..-  -++  .=.|.++.+++++.+      +....  +..|+.++|+++   ....+   ..+.|+  
T Consensus       390 ~Aa~~~l~~~~~KR--~ke--~l~k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~~~~~mE~fl--  463 (1010)
T KOG1991|consen  390 TAALDFLTTLVSKR--GKE--TLPKILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKSPYKSQMEYFL--  463 (1010)
T ss_pred             HHHHHHHHHHHHhc--chh--hhhhHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCCchHHHHHHHH--
Confidence            46777777777532  011  112567778888872      22222  345666666654   33322   223333  


Q ss_pred             CcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHHhCCcHHHHHHhcc-CCChHHHHHHHHHHHHHhc
Q 015951          253 AGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTA-SADLDLQEKALAAIKNLLQ  331 (397)
Q Consensus       253 gGi~~L~~lL~s~~~d~klr~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~-~~d~dv~E~aL~aL~~L~~  331 (397)
                        .+.+...++++.  --+|.+|||.++.+++.       ++...-.-....+.+...|. +.+..|+-.|+.||..+..
T Consensus       464 --v~hVfP~f~s~~--g~Lrarac~vl~~~~~~-------df~d~~~l~~ale~t~~~l~~d~~lPV~VeAalALq~fI~  532 (1010)
T KOG1991|consen  464 --VNHVFPEFQSPY--GYLRARACWVLSQFSSI-------DFKDPNNLSEALELTHNCLLNDNELPVRVEAALALQSFIS  532 (1010)
T ss_pred             --HHHhhHhhcCch--hHHHHHHHHHHHHHHhc-------cCCChHHHHHHHHHHHHHhccCCcCchhhHHHHHHHHHHh
Confidence              333444456663  34899999999999852       22222222234556666666 6678999999999999998


Q ss_pred             CChHHHHHHH
Q 015951          332 LRTTEALVLK  341 (397)
Q Consensus       332 ~~~~~r~~~~  341 (397)
                      +.+.....++
T Consensus       533 ~~~~~~e~~~  542 (1010)
T KOG1991|consen  533 NQEQADEKVS  542 (1010)
T ss_pred             cchhhhhhHh
Confidence            8654434344

>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []

Probab=83.45  E-value=44  Score=33.40  Aligned_cols=160  Identities=12%  Similarity=0.058  Sum_probs=109.1

Q ss_pred             HHHHHHhcCCCCHHHHHHHHHHHHHHhc-CChHHHHHHHHc-----CcHHHHHHhhcCC--C--------HHHHHHH-HH
Q 015951          171 LSVLVGQLNHPDTDIRKISAWILGKASQ-NNPLVQKQVLEL-----GALSKLMKMVKSS--F--------VEEAVKA-LY  233 (397)
Q Consensus       171 l~~Li~lL~s~~~~ir~~Aa~vLg~~aq-NNp~~Q~~vl~~-----g~lp~Ll~LL~s~--~--------~~v~~kA-l~  233 (397)
                      +..+...|++..+.+...+..++..++. ++...-..++..     ..+|+|+..=...  .        ..+|... -+
T Consensus        58 ~k~lyr~L~~~~~~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~~~l~kll~~~~~~~~~~~~~~~~~~siR~~fI~F  137 (330)
T PF11707_consen   58 LKLLYRSLSSSKPSLTNPALRLLTAIVSFDGGALAREVLRSFDFSLKSLPKLLTPRKKEKEKDSESSKSKPSIRTNFIRF  137 (330)
T ss_pred             HHHHHHHhCcCcHHHHHHHHHHHHHHHccCCHHHHHHHHHhcCCchhhHHHHhccccccccccccccccCcCHHHHHHHH
Confidence            7778899999999999999999999999 887777777754     2444444332211  1        1566655 46


Q ss_pred             HHHHHhcCChhcHHHHHhcCc-HHHHHHhhcCCCccHHHHHHHHHHHHH-HhhchhccCCCCcchhHHhCCcHHHHHHhc
Q 015951          234 TVSSLIRNNLAGQEMFYVEAG-DLMLQDILGNSSFEIRLHRKAVSLVGD-LAKCQLENMHKVEPPLFRDRFFLKSVVDLT  311 (397)
Q Consensus       234 ALS~LiR~~~~~~~~f~~~gG-i~~L~~lL~s~~~d~klr~kA~~lL~~-L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL  311 (397)
                      +|+-+...++.....++..++ +..+.+-|..+  +..+-......+.. +..+.  .-....+-.+.....+..++.+-
T Consensus       138 ~Lsfl~~~~~~~~~~lL~~~~~~~~l~k~l~~D--~~~~v~~iL~~l~~~Vl~~~--~v~r~~K~~~fn~~~L~~l~~Ly  213 (330)
T PF11707_consen  138 WLSFLSSGDPELKRDLLSQKKLMSALFKGLRKD--PPETVILILETLKDKVLKDS--SVSRSTKCKLFNEWTLSQLASLY  213 (330)
T ss_pred             HHHHHccCCHHHHHHHHHcCchHHHHHhcccCC--CHHHHHHHHHHHHHHhccCC--CCChhhhhhhcCHHHHHHHHHHh
Confidence            666666667777888887665 55555556654  44566666666653 44311  11234555677778899999988


Q ss_pred             cCCCh----HHHHHHHHHHHHHhcCCh
Q 015951          312 ASADL----DLQEKALAAIKNLLQLRT  334 (397)
Q Consensus       312 ~~~d~----dv~E~aL~aL~~L~~~~~  334 (397)
                      ..++.    .+.+.+-..|..+++++.
T Consensus       214 ~~~~~~~~~~~~~~vh~fL~~lcT~p~  240 (330)
T PF11707_consen  214 SRDGEDEKSSVADLVHEFLLALCTDPK  240 (330)
T ss_pred             cccCCcccchHHHHHHHHHHHHhcCCC
Confidence            87777    889999988888887653

The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.

>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]

Probab=83.30  E-value=4.1  Score=42.93  Aligned_cols=149  Identities=17%  Similarity=0.186  Sum_probs=86.7

Q ss_pred             CCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHh----cCChh---cHHHHHh
Q 015951          179 NHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLI----RNNLA---GQEMFYV  251 (397)
Q Consensus       179 ~s~~~~ir~~Aa~vLg~~aqNNp~~Q~~vl~~g~lp~Ll~LL~s~~~~v~~kAl~ALS~Li----R~~~~---~~~~f~~  251 (397)
                      .|.+.-++..|.+.++..+-+.---++...-.++...++..+.++.-.+|.|+.|++|+|.    -+-|.   .+..|  
T Consensus       401 d~~~~lv~~aA~Ra~~VyVLHp~lr~d~~fv~~aa~~il~sl~d~~ln~r~KaawtlgnITdAL~~~~Ps~~s~~eR~--  478 (728)
T KOG4535|consen  401 DSKNRLVKAAASRALGVYVLHPCLRQDVIFVADAANAILMSLEDKSLNVRAKAAWSLGNITDALIVNMPTPDSFQERF--  478 (728)
T ss_pred             chHHHHHHHHHHhhceeEEeccchhhhHHHHHHHHHHHHHHhhhHhHhHHHHHHHHhhhhHHHHHcCCCCchHHHHHH--
Confidence            4455568888888888887655545555555567777777777766678999999999863    23333   22333  


Q ss_pred             cCcHHH---HHHhhcCCCccHHHHHHHHHHHHHHhhchhc-cCCCCcchhHHhCCcHHHHHHh-ccCCChHHHHHHHHHH
Q 015951          252 EAGDLM---LQDILGNSSFEIRLHRKAVSLVGDLAKCQLE-NMHKVEPPLFRDRFFLKSVVDL-TASADLDLQEKALAAI  326 (397)
Q Consensus       252 ~gGi~~---L~~lL~s~~~d~klr~kA~~lL~~L~~~~l~-~~~~~~~~~l~~~g~v~~Lv~l-L~~~d~dv~E~aL~aL  326 (397)
                       -|.-+   +.....++.+..|++.+|+..|.++..- +. -....+.+  ..+|-+..+... +......|+=++..++
T Consensus       479 -sg~ll~~~~~~A~~~~Ad~dkV~~navraLgnllQv-lq~i~~~~~~e--~~~~~~~~l~~~v~~~~~~kV~WNaCya~  554 (728)
T KOG4535|consen  479 -SGLLLLKMLRSAIEASADKDKVKSNAVRALGNLLQF-LQPIEKPTFAE--IIEESIQALISTVLTEAAMKVRWNACYAM  554 (728)
T ss_pred             -HHHHHHHHHHHHHHhhhhhhhhhhHHHHHHhhHHHH-HHHhhhccHHH--HHHHHHHhcccceecccccccchHHHHHH
Confidence             23322   2222233334568999999999999741 10 00111111  122222222222 2233567777777777


Q ss_pred             HHHhcCC
Q 015951          327 KNLLQLR  333 (397)
Q Consensus       327 ~~L~~~~  333 (397)
                      +||.++.
T Consensus       555 gNLfkn~  561 (728)
T KOG4535|consen  555 GNLFKNP  561 (728)
T ss_pred             HHhhcCc
Confidence            7777664

>PF11791 Aconitase_B_N: Aconitate B N-terminal domain; InterPro: IPR015933 Aconitase (aconitate hydratase; 4

Probab=83.23  E-value=3.8  Score=36.62  Aligned_cols=105  Identities=19%  Similarity=0.105  Sum_probs=58.5

Q ss_pred             HHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhccCC-CCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChH
Q 015951          124 DAQLIQIAIDDLNNSTLSLEDSQRALQELLILVEP-IDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPL  202 (397)
Q Consensus       124 d~~lmk~~i~~L~~~~~s~e~k~~AL~~L~~Lve~-iDnA~~~~~lGGl~~Li~lL~s~~~~ir~~Aa~vLg~~aqNNp~  202 (397)
                      +++...++++.|.++...  +....++-|.+-|-+ .|-|- -+|.+.+..++.-=.+...--+..|...||++--.-  
T Consensus        20 ~a~Qt~~lielLk~~~~~--~~~~lldLL~~RV~PGVD~AA-~VKA~FL~~ia~g~~~~~~Is~~~Av~LLGtM~GGY--   94 (154)
T PF11791_consen   20 NAEQTAELIELLKNPPAG--EEAFLLDLLTNRVPPGVDEAA-YVKAEFLAAIAKGEISSPLISPAEAVELLGTMLGGY--   94 (154)
T ss_dssp             -HHHHHHHHHHHHS--TT---HHHHHHHHHHSS--TT-HHH-HHHHHHHHHHHTTSS-BTTB-HHHHHHHHTTS-SST--
T ss_pred             CHHHHHHHHHHHhCCCCc--cHHHHHHHHHhcCCCCCChHH-HHHHHHHHHHHcCCccCCCcCHHHHHHHHhhccCCC--
Confidence            567777788888777543  444566666666654 45443 345555555553211122223677888888875321  


Q ss_pred             HHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCC
Q 015951          203 VQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNN  242 (397)
Q Consensus       203 ~Q~~vl~~g~lp~Ll~LL~s~~~~v~~kAl~ALS~LiR~~  242 (397)
                               -+.+|+.+|.+++.++...|.-+|++.+--|
T Consensus        95 ---------NV~~LI~~L~~~d~~lA~~Aa~aLk~TlLvy  125 (154)
T PF11791_consen   95 ---------NVQPLIDLLKSDDEELAEEAAEALKNTLLVY  125 (154)
T ss_dssp             ---------THHHHHHGG--G-TTTHHHHHHHHHT--TTC
T ss_pred             ---------cHHHHHHHHcCCcHHHHHHHHHHHHhhHHHH
Confidence                     2889999998888888888999998865443

2.1.3 from EC) is an iron-sulphur protein that contains a [4Fe-4S]-cluster and catalyses the interconversion of isocitrate and citrate via a cis-aconitate intermediate. Aconitase functions in both the TCA and glyoxylate cycles, however unlike the majority of iron-sulphur proteins that function as electron carriers, the [4Fe-4S]-cluster of aconitase reacts directly with an enzyme substrate. In eukaryotes there is a cytosolic form (cAcn) and a mitochondrial form (mAcn) of the enzyme. In bacteria there are also 2 forms, aconitase A (AcnA) and B (AcnB). Several aconitases are known to be multi-functional enzymes with a second non-catalytic, but essential function that arises when the cellular environment changes, such as when iron levels drop [, ]. Eukaryotic cAcn and mAcn, and bacterial AcnA have the same domain organisation, consisting of three N-terminal alpha/beta/alpha domains, a linker region, followed by a C-terminal 'swivel' domain with a beta/beta/alpha structure (1-2-3-linker-4), although mAcn is small than cAcn. However, bacterial AcnB has a different organisation: it contains an N-terminal HEAT-like domain, followed by the 'swivel' domain, then the three alpha/beta/alpha domains (HEAT-4-1-2-3) []. Below is a description of some of the multi-functional activities associated with different aconitases. Eukaryotic mAcn catalyses the second step of the mitochondrial TCA cycle, which is important for energy production, providing high energy electrons in the form of NADH and FADH2 to the mitochondrial oxidative phosphorylation pathway []. The TCA cycle also provides precursors for haem and amino acid production. This enzyme has a second, non-catalytic but essential role in mitochondrial DNA (mtDNA) maintenance: mAcn acts to stabilise mtDNA, forming part of mtDNA protein-DNA complexes known as nucleoids. mAcn is thought to reversibly model nucleoids to directly influence mitochondrial gene expression in response to changes in the cellular environment. Therefore, mAcn can influence the expression of components of the oxidative phosphorylation pathway encoded in mtDNA. Eukaryotic cAcn enzyme balances the amount of citrate and isocitrate in the cytoplasm, which in turn creates a balance between the amount of NADPH generated from isocitrate by isocitrate dehydrogenase with the amount of acetyl-CoA generated from citrate by citrate lyase. Fatty acid synthesis requires both NADPH and acetyl-CoA, as do other metabolic processes, including the need for NADPH to combat oxidative stress. The enzymatic form of cAcn predominates when iron levels are normal, but if they drop sufficiently to cause the disassembly of the [4Fe-4S]-cluster, then cAcn undergoes a conformational change from a compact enzyme to a more open L-shaped protein known as iron regulatory protein 1 (IRP1; or IRE-binding protein 1, IREBP1) [, ]. As IRP1, the catalytic site and the [4Fe-4S]-cluster are lost, and two new RNA-binding sites appear. IRP1 functions in the post-transcriptional regulation of genes involved in iron metabolism - it binds to mRNA iron-responsive elements (IRE), 30-nucleotide stem-loop structures at the 3' or 5' end of specific transcripts. Transcripts containing an IRE include ferritin L and H subunits (iron storage), transferrin (iron plasma chaperone), transferrin receptor (iron uptake into cells), ferroportin (iron exporter), mAcn, succinate dehydrogenase, erythroid aminolevulinic acid synthetase (tetrapyrrole biosynthesis), among others. If the IRE is in the 5'-UTR of the transcript (e.g. in ferritin mRNA), then IRP1-binding prevents its translation by blocking the transcript from binding to the ribosome. If the IRE is in the 3'-UTR of the transcript (e.g. transferrin receptor), then IRP1-binding protects it from endonuclease degradation, thereby prolonging the half-life of the transcript and enabling it to be translated []. IRP2 is another IRE-binding protein that binds to the same transcripts as IRP1. However, since IRP1 is predominantly in the enzymatic cAcn form, it is IRP2 that acts as the major metabolic regulator that maintains iron homeostasis []. Although IRP2 is homologous to IRP1, IRP2 lacks aconitase activity, and is known only to have a single function in the post-transcriptional regulation of iron metabolism genes []. In iron-replete cells, IRP2 activity is regulated primarily by iron-dependent degradation through the ubiquitin-proteasomal system. Bacterial AcnB is also known to be multi-functional. In addition to its role in the TCA cycle, AcnB was shown to be a post-transcriptional regulator of gene expression in Escherichia coli and Salmonella enterica [, ]. In S. enterica, AcnB initiates a regulatory cascade controlling flagella biosynthesis through an interaction with the ftsH transcript, an alternative RNA polymerase sigma factor. This binding lowers the intracellular concentration of FtsH protease, which in turn enhances the amount of RNA polymerase sigma32 factor (normally degraded by FtsH protease), and sigma32 then increases the synthesis of chaperone DnaK, which in turn promotes the synthesis of the flagellar protein FliC. AcnB regulates the synthesis of other proteins as well, such as superoxide dismutase (SodA) and other enzymes involved in oxidative stress. This entry represents the N-terminal HEAT-like domain, which is present in bacterial aconitase (AcnB), but not in AcnA or eukaryotic cAcn/IRP2 or mAcn. This domain is multi-helical, forming two curved layers in a right-handed alpha-alpha superhelix. HEAT-like domains are usually implicated in protein-protein interactions. The HEAT-like domain and the 'swivel' domain that follows it were shown to be sufficient for dimerisation and for AcnB binding to mRNA. An iron-mediated dimerisation mechanism may be responsible for switching AcnB between its catalytic and regulatory roles, as dimerisation requires iron while mRNA binding is inhibited by iron. More information about these proteins can be found at Protein of the Month: Aconitase [].; GO: 0003994 aconitate hydratase activity, 0006099 tricarboxylic acid cycle; PDB: 1L5J_B.

>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []

Probab=83.11  E-value=5.1  Score=43.21  Aligned_cols=167  Identities=13%  Similarity=0.055  Sum_probs=94.1

Q ss_pred             CHHHHHHHHHHHhhCCC--CCHHHHHHHHHHHHhccCCCCch----------hHHHhcCCHHHHHHhcC----CCCHHHH
Q 015951          123 SDAQLIQIAIDDLNNST--LSLEDSQRALQELLILVEPIDNA----------NDLSKLGGLSVLVGQLN----HPDTDIR  186 (397)
Q Consensus       123 ~d~~lmk~~i~~L~~~~--~s~e~k~~AL~~L~~Lve~iDnA----------~~~~~lGGl~~Li~lL~----s~~~~ir  186 (397)
                      .+.++++.+.+.+..+.  .++.-+..|+-.+..+++..-..          ...+.-.-++.+...|.    ..+.+-+
T Consensus       428 Pt~e~l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~  507 (618)
T PF01347_consen  428 PTEELLKELFELAKSPKVKNSPYLRETALLSLGSLVHKYCVNSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEK  507 (618)
T ss_dssp             --HHHHHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHTT-----------SS--GGGTHHHHHHHHHHHHTT-HHHH
T ss_pred             CCHHHHHHHHHHHhCccccCChhHHHHHHHHHHHHhCceeecccccccccccchhhHHHHHHHHHHHHHHHhhccCHHHH
Confidence            45777887777775432  23344555555555544321111          11222234455555443    4667888


Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHcCcHHHHHHhhcCC---CHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhc
Q 015951          187 KISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSS---FVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILG  263 (397)
Q Consensus       187 ~~Aa~vLg~~aqNNp~~Q~~vl~~g~lp~Ll~LL~s~---~~~v~~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~  263 (397)
                      ..+..+||++-.  |         ..++.|..++...   +..+|..|++|+..+...+|.-        ..+.|..++.
T Consensus       508 ~~~LkaLgN~g~--~---------~~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~~~~~~~--------v~~~l~~I~~  568 (618)
T PF01347_consen  508 IVYLKALGNLGH--P---------ESIPVLLPYIEGKEEVPHFIRVAAIQALRRLAKHCPEK--------VREILLPIFM  568 (618)
T ss_dssp             HHHHHHHHHHT---G---------GGHHHHHTTSTTSS-S-HHHHHHHHHTTTTGGGT-HHH--------HHHHHHHHHH
T ss_pred             HHHHHHhhccCC--c---------hhhHHHHhHhhhccccchHHHHHHHHHHHHHhhcCcHH--------HHHHHHHHhc
Confidence            999999999853  3         5789999998877   4578999999999887666643        2355678887


Q ss_pred             CCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHHhCCcHHHHHHhccCC-ChHHHHHHH
Q 015951          264 NSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASA-DLDLQEKAL  323 (397)
Q Consensus       264 s~~~d~klr~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~-d~dv~E~aL  323 (397)
                      +...+..+|..|..+|-.        .+|.       ...+..+...+..+ +..|.--+.
T Consensus       569 n~~e~~EvRiaA~~~lm~--------~~P~-------~~~l~~i~~~l~~E~~~QV~sfv~  614 (618)
T PF01347_consen  569 NTTEDPEVRIAAYLILMR--------CNPS-------PSVLQRIAQSLWNEPSNQVASFVY  614 (618)
T ss_dssp             -TTS-HHHHHHHHHHHHH--------T----------HHHHHHHHHHHTT-S-HHHHHHHH
T ss_pred             CCCCChhHHHHHHHHHHh--------cCCC-------HHHHHHHHHHHhhCchHHHHHHHH
Confidence            765667777766554433        1232       24566677777554 444444443

Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.

>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length

Probab=83.05  E-value=13  Score=33.35  Aligned_cols=145  Identities=17%  Similarity=0.157  Sum_probs=85.9

Q ss_pred             CHHHHHHhcCC-CCHHHHHHHHHHHHHHhcCChHHHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHH
Q 015951          170 GLSVLVGQLNH-PDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEM  248 (397)
Q Consensus       170 Gl~~Li~lL~s-~~~~ir~~Aa~vLg~~aqNNp~~Q~~vl~~g~lp~Ll~LL~s~~~~v~~kAl~ALS~LiR~~~~~~~~  248 (397)
                      .++.|+++|+. .+.++|..|.++||.+-.=.|.-.+.+....-  .-.  -..++.......+     ...+..+..+.
T Consensus        11 LL~~L~~iLk~e~s~~iR~E~lr~lGilGALDP~~~k~~~~~~~--~~~--~~~~~~~~~~~~l-----~~~~~~~~~ee   81 (160)
T PF11865_consen   11 LLDILLNILKTEQSQSIRREALRVLGILGALDPYKHKSIQKSLD--SKS--SENSNDESTDISL-----PMMGISPSSEE   81 (160)
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHhhhccccCcHHHhcccccCC--ccc--cccccccchhhHH-----hhccCCCchHH
Confidence            35667778854 56999999999999997767754443222111  000  0000011111111     11223345678


Q ss_pred             HHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHHhCCcHHHHHHhccCCChHHHHHHHHHHHH
Q 015951          249 FYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKN  328 (397)
Q Consensus       249 f~~~gGi~~L~~lL~s~~~d~klr~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~dv~E~aL~aL~~  328 (397)
                      |+-...+..|+++|++++- ..-...++.++.++...    .+....+.+-  -+++.++..++..+...+|..+.-|..
T Consensus        82 ~y~~vvi~~L~~iL~D~sL-s~~h~~vv~ai~~If~~----l~~~cv~~L~--~viP~~l~~i~~~~~~~~e~~~~qL~~  154 (160)
T PF11865_consen   82 YYPTVVINALMRILRDPSL-SSHHTAVVQAIMYIFKS----LGLKCVPYLP--QVIPIFLRVIRTCPDSLREFYFQQLAD  154 (160)
T ss_pred             HHHHHHHHHHHHHHHhhhh-HHHHHHHHHHHHHHHHh----cCcCchhHHH--HHhHHHHHHHHhCCHHHHHHHHHHHHH
Confidence            8888889999999987743 23455677777777642    2333344442  467778888886666888888777766


Q ss_pred             Hh
Q 015951          329 LL  330 (397)
Q Consensus       329 L~  330 (397)
                      |.
T Consensus       155 lv  156 (160)
T PF11865_consen  155 LV  156 (160)
T ss_pred             HH
Confidence            65

It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].

>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain

Probab=83.01  E-value=13  Score=36.40  Aligned_cols=112  Identities=17%  Similarity=0.054  Sum_probs=77.3

Q ss_pred             CcHHHHH-HhhcCCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhcc
Q 015951          211 GALSKLM-KMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLEN  289 (397)
Q Consensus       211 g~lp~Ll-~LL~s~~~~v~~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klr~kA~~lL~~L~~~~l~~  289 (397)
                      +.+..|+ .-+.+.+..+|..|+-++|-.+--+.....     .-+..+.+.+..+  +..++..|+.++.++....   
T Consensus        26 ~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~~~a~-----~~l~l~~~~~~~~--~~~v~~~al~~l~Dll~~~---   95 (298)
T PF12719_consen   26 SLLDSLILPAVQSSDPAVRELALKCLGLCCLLDKELAK-----EHLPLFLQALQKD--DEEVKITALKALFDLLLTH---   95 (298)
T ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhChHHHH-----HHHHHHHHHHHhC--CHHHHHHHHHHHHHHHHHc---
Confidence            4555555 567777889999999998854443332222     2356677777554  5679999999999998631   


Q ss_pred             CCCCcch-------hHHhCCcHHHHHHhccCCChHHHHHHHHHHHHHhcCC
Q 015951          290 MHKVEPP-------LFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLR  333 (397)
Q Consensus       290 ~~~~~~~-------~l~~~g~v~~Lv~lL~~~d~dv~E~aL~aL~~L~~~~  333 (397)
                       +....+       ......+.+.+...+.+.+++++..|..++..|.-.+
T Consensus        96 -g~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~  145 (298)
T PF12719_consen   96 -GIDIFDSESDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSG  145 (298)
T ss_pred             -CchhccchhccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcC
Confidence             111111       1223567778888899999999999999999887654

>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]

Probab=82.66  E-value=27  Score=40.09  Aligned_cols=141  Identities=16%  Similarity=0.106  Sum_probs=83.8

Q ss_pred             CCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhc---HHHHHh--cCc
Q 015951          180 HPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAG---QEMFYV--EAG  254 (397)
Q Consensus       180 s~~~~ir~~Aa~vLg~~aqNNp~~Q~~vl~~g~lp~Ll~LL~s~~~~v~~kAl~ALS~LiR~~~~~---~~~f~~--~gG  254 (397)
                      |=++.+|+.|+++|..++.--|+    .+..+.+|+|+....+.+...|.-+.-|.+.++.+....   ...+.+  -.|
T Consensus       555 HWd~~irelaa~aL~~Ls~~~pk----~~a~~~L~~lld~~ls~~~~~r~g~~la~~ev~~~~~~l~~~~~~l~e~~i~~  630 (1133)
T KOG1943|consen  555 HWDVKIRELAAYALHKLSLTEPK----YLADYVLPPLLDSTLSKDASMRHGVFLAAGEVIGALRKLEPVIKGLDENRIAG  630 (1133)
T ss_pred             cccHHHHHHHHHHHHHHHHhhHH----hhcccchhhhhhhhcCCChHHhhhhHHHHHHHHHHhhhhhhhhhhhHHHHhhh
Confidence            35899999999999999886663    455678999999999888877776666666655432211   111111  123


Q ss_pred             HHHHHHh-----hcCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHHhCCcHHHHHHhccCCChHHHHHHHHHHHHH
Q 015951          255 DLMLQDI-----LGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNL  329 (397)
Q Consensus       255 i~~L~~l-----L~s~~~d~klr~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~dv~E~aL~aL~~L  329 (397)
                      +.-++.-     ++-+ .....+.-.+..+..+..     ++......+...+|-..+.+.+..++ .+++.+..++..+
T Consensus       631 l~~ii~~~~~~~~~rg-~~~lmr~~~~~~Ie~~s~-----s~~~~~~~~v~e~~~~ll~~~l~~~n-~i~~~av~av~~l  703 (1133)
T KOG1943|consen  631 LLSIIPPICDRYFYRG-QGTLMRQATLKFIEQLSL-----SKDRLFQDFVIENWQMLLAQNLTLPN-QIRDAAVSAVSDL  703 (1133)
T ss_pred             hhhhccHHHHHHhccc-hHHHHHHHHHHHHHHhhh-----ccchhHHHHHHHHHHHHHHHhhcchH-HHHHHHHHHHHHH
Confidence            2111211     1111 112234444455555543     23444445555667777777775555 7778888777777


Q ss_pred             hc
Q 015951          330 LQ  331 (397)
Q Consensus       330 ~~  331 (397)
                      .+
T Consensus       704 ~s  705 (1133)
T KOG1943|consen  704 VS  705 (1133)
T ss_pred             HH
Confidence            63

>PF10363 DUF2435: Protein of unknown function (DUF2435)

Probab=82.20  E-value=6.2  Score=32.20  Aligned_cols=86  Identities=20%  Similarity=0.165  Sum_probs=63.9

Q ss_pred             HHHHHHHHHhhCCCCCHHHHHHHHHHHHhccCCCCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHHHH
Q 015951          126 QLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQK  205 (397)
Q Consensus       126 ~lmk~~i~~L~~~~~s~e~k~~AL~~L~~Lve~iDnA~~~~~lGGl~~Li~lL~s~~~~ir~~Aa~vLg~~aqNNp~~Q~  205 (397)
                      +..++++..+.++..  -.|..+|..|..+++.-+ ......-+.+..++..|+++++=|=-+|..+++.++.-.|.   
T Consensus         3 ~~~~~al~~L~dp~~--PvRa~gL~~L~~Li~~~~-~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p~---   76 (92)
T PF10363_consen    3 ETLQEALSDLNDPLP--PVRAHGLVLLRKLIESKS-EPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHPD---   76 (92)
T ss_pred             HHHHHHHHHccCCCc--chHHHHHHHHHHHHHcCC-cchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHChH---
Confidence            456777788877753  478899999999998877 11122225667777899999999999999999999987773   


Q ss_pred             HHHHcCcHHHHHHhhcC
Q 015951          206 QVLELGALSKLMKMVKS  222 (397)
Q Consensus       206 ~vl~~g~lp~Ll~LL~s  222 (397)
                           .++|.|++...+
T Consensus        77 -----~vl~~L~~~y~~   88 (92)
T PF10363_consen   77 -----EVLPILLDEYAD   88 (92)
T ss_pred             -----HHHHHHHHHHhC
Confidence                 356777665544

>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]

Probab=81.92  E-value=64  Score=35.06  Aligned_cols=110  Identities=13%  Similarity=0.067  Sum_probs=79.4

Q ss_pred             CHHHHHHhcCC--CC-----HHHHHHHHHHHHHHhcCChHHHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCC
Q 015951          170 GLSVLVGQLNH--PD-----TDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNN  242 (397)
Q Consensus       170 Gl~~Li~lL~s--~~-----~~ir~~Aa~vLg~~aqNNp~~Q~~vl~~g~lp~Ll~LL~s~~~~v~~kAl~ALS~LiR~~  242 (397)
                      .+|.|+.+|..  ++     =.+-..|..||.-.+|+   +.+.+++. ++..+=+-+.+++=.-|..|+-|++++..+-
T Consensus       322 vlP~lL~LL~~q~ed~~~DdWn~smaA~sCLqlfaq~---~gd~i~~p-Vl~FvEqni~~~~w~nreaavmAfGSvm~gp  397 (858)
T COG5215         322 VLPELLSLLEKQGEDYYGDDWNPSMAASSCLQLFAQL---KGDKIMRP-VLGFVEQNIRSESWANREAAVMAFGSVMHGP  397 (858)
T ss_pred             HHHHHHHHHHhcCCCccccccchhhhHHHHHHHHHHH---hhhHhHHH-HHHHHHHhccCchhhhHHHHHHHhhhhhcCc
Confidence            68888999854  22     24788899999988886   44555543 4444556666666566889999999998664


Q ss_pred             hhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhc
Q 015951          243 LAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKC  285 (397)
Q Consensus       243 ~~~~~~f~~~gGi~~L~~lL~s~~~d~klr~kA~~lL~~L~~~  285 (397)
                      ...+..-+-...++.+...+.++  -.-++..++|+++.++.+
T Consensus       398 ~~~~lT~~V~qalp~i~n~m~D~--~l~vk~ttAwc~g~iad~  438 (858)
T COG5215         398 CEDCLTKIVPQALPGIENEMSDS--CLWVKSTTAWCFGAIADH  438 (858)
T ss_pred             cHHHHHhhHHhhhHHHHHhcccc--eeehhhHHHHHHHHHHHH
Confidence            44444445577888888888865  455788999999999875

>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis

Probab=81.74  E-value=47  Score=33.57  Aligned_cols=138  Identities=10%  Similarity=0.033  Sum_probs=103.8

Q ss_pred             HHHHHHHHHhccCCCCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcC---cHHHHHHhhc
Q 015951          145 SQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELG---ALSKLMKMVK  221 (397)
Q Consensus       145 k~~AL~~L~~Lve~iDnA~~~~~lGGl~~Li~lL~s~~~~ir~~Aa~vLg~~aqNNp~~Q~~vl~~g---~lp~Ll~LL~  221 (397)
                      -..+-.-|.+++..-..|.-+....-+..+.++...++-+|-.-|...+..+-..|+..-..++..+   .+...-+|+.
T Consensus       140 al~~g~mlRec~k~e~l~~~iL~~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~  219 (335)
T PF08569_consen  140 ALNCGDMLRECIKHESLAKIILYSECFWKFFKYVQLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLE  219 (335)
T ss_dssp             HHHHHHHHHHHTTSHHHHHHHHTSGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT
T ss_pred             cchHHHHHHHHHhhHHHHHHHhCcHHHHHHHHHhcCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHcc
Confidence            3445566666776655666666666777788889999999999999999999999998888887765   4678889999


Q ss_pred             CCCHHHHHHHHHHHHHHhcCCh--hcHHHHHh-cCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhh
Q 015951          222 SSFVEEAVKALYTVSSLIRNNL--AGQEMFYV-EAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAK  284 (397)
Q Consensus       222 s~~~~v~~kAl~ALS~LiR~~~--~~~~~f~~-~gGi~~L~~lL~s~~~d~klr~kA~~lL~~L~~  284 (397)
                      +++=-.++.++--|+.++-+..  .....++. ..-+..++.+|+++  ...+|..|.....=++.
T Consensus       220 s~NYvtkrqslkLL~ellldr~n~~vm~~yi~~~~nLkl~M~lL~d~--sk~Iq~eAFhvFKvFVA  283 (335)
T PF08569_consen  220 SSNYVTKRQSLKLLGELLLDRSNFNVMTRYISSPENLKLMMNLLRDK--SKNIQFEAFHVFKVFVA  283 (335)
T ss_dssp             -SSHHHHHHHHHHHHHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT-S---HHHHHHHHHHHHHHHH
T ss_pred             CCCeEeehhhHHHHHHHHHchhHHHHHHHHHCCHHHHHHHHHHhcCc--chhhhHHHHHHHHHHHh
Confidence            9887789999999999886532  33344543 35688889999987  44588899888887765

In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.

>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]

Probab=81.70  E-value=15  Score=40.70  Aligned_cols=156  Identities=15%  Similarity=0.102  Sum_probs=98.3

Q ss_pred             cCCHHHHHH-hcCCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCcHHHHHHh-hcCCCHHHHHHHHHHHHHHhcCChhc
Q 015951          168 LGGLSVLVG-QLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKM-VKSSFVEEAVKALYTVSSLIRNNLAG  245 (397)
Q Consensus       168 lGGl~~Li~-lL~s~~~~ir~~Aa~vLg~~aqNNp~~Q~~vl~~g~lp~Ll~L-L~s~~~~v~~kAl~ALS~LiR~~~~~  245 (397)
                      .+...++|. ++...+|-+|......++-+--..       -..++|..|+.. +++.++.||+.|+.||+-++-..|..
T Consensus       517 qe~Ad~lI~el~~dkdpilR~~Gm~t~alAy~GT-------gnnkair~lLh~aVsD~nDDVrRaAVialGFVl~~dp~~  589 (929)
T KOG2062|consen  517 QEDADPLIKELLRDKDPILRYGGMYTLALAYVGT-------GNNKAIRRLLHVAVSDVNDDVRRAAVIALGFVLFRDPEQ  589 (929)
T ss_pred             hhhhHHHHHHHhcCCchhhhhhhHHHHHHHHhcc-------CchhhHHHhhcccccccchHHHHHHHHHheeeEecChhh
Confidence            456778884 667889999998877776543110       123678889988 45556899999999999877666653


Q ss_pred             HHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHHhCCcHHHHHHhccCC-ChHHHHHHHH
Q 015951          246 QEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASA-DLDLQEKALA  324 (397)
Q Consensus       246 ~~~f~~~gGi~~L~~lL~s~~~d~klr~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~-d~dv~E~aL~  324 (397)
                      .         +..+.+|... .+.-+|--|+.+|.--|..      ...++.+       .|.+.|.++ ..-||.-|+-
T Consensus       590 ~---------~s~V~lLses-~N~HVRyGaA~ALGIaCAG------tG~~eAi-------~lLepl~~D~~~fVRQgAlI  646 (929)
T KOG2062|consen  590 L---------PSTVSLLSES-YNPHVRYGAAMALGIACAG------TGLKEAI-------NLLEPLTSDPVDFVRQGALI  646 (929)
T ss_pred             c---------hHHHHHHhhh-cChhhhhhHHHHHhhhhcC------CCcHHHH-------HHHhhhhcChHHHHHHHHHH
Confidence            3         2335556533 2445888999999987752      2222221       233333333 4456677777


Q ss_pred             HHHHHhcCChHHHHHHHhcCChHHHHHHHHHHhHHhhh
Q 015951          325 AIKNLLQLRTTEALVLKDFCGLDTALERLRQQLQEVML  362 (397)
Q Consensus       325 aL~~L~~~~~~~r~~~~~~~gL~~~L~~Lr~~~~~l~~  362 (397)
                      ++.-+...-         ...+-|.+...|+++.....
T Consensus       647 a~amIm~Q~---------t~~~~pkv~~frk~l~kvI~  675 (929)
T KOG2062|consen  647 ALAMIMIQQ---------TEQLCPKVNGFRKQLEKVIN  675 (929)
T ss_pred             HHHHHHHhc---------ccccCchHHHHHHHHHHHhh
Confidence            776655321         22345556777777777664

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=81.53  E-value=23  Score=39.29  Aligned_cols=122  Identities=18%  Similarity=0.130  Sum_probs=83.5

Q ss_pred             HHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHHhCCcHHHHHHhccC
Q 015951          234 TVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTAS  313 (397)
Q Consensus       234 ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klr~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~  313 (397)
                      +|.++.-.+|.....|++.||...+..++.+- +...+++++..++.+++...   ...+....+..-.+ ..+-.+++.
T Consensus       494 ~l~~~t~~~~~~C~~~l~~~g~~~~~~~l~~f-~~~~~~~~il~~l~n~~~~~---~~~~~~~~~~~~~~-~~f~~~~~~  568 (699)
T KOG3665|consen  494 ALWNITDENPETCKEFLDNGGMKLLFKCLESF-DNEELHRKILGLLGNLAEVL---ELRELLMIFEFIDF-SVFKVLLNK  568 (699)
T ss_pred             HHHhhhcCCHHHHHHHHhcccHHHHHHHHhhc-cchhHHHHHHHHHHHHHHHh---hhhhhhhHHHHHHH-HHHHHHHhh
Confidence            88899999999999999999999999999976 45569999999999998632   11222222222221 122224444


Q ss_pred             C-ChHHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHHHHHhHHhhhhh
Q 015951          314 A-DLDLQEKALAAIKNLLQLRTTEALVLKDFCGLDTALERLRQQLQEVMLEE  364 (397)
Q Consensus       314 ~-d~dv~E~aL~aL~~L~~~~~~~r~~~~~~~gL~~~L~~Lr~~~~~l~~~e  364 (397)
                      - +.+.-..+...|..+..+++.    ....+.-+++.+++...+.......
T Consensus       569 w~~~ersY~~~siLa~ll~~~~~----~~~~~~r~~~~~~l~e~i~~~~~~~  616 (699)
T KOG3665|consen  569 WDSIERSYNAASILALLLSDSEK----TTECVFRNSVNELLVEAISRWLTSE  616 (699)
T ss_pred             cchhhHHHHHHHHHHHHHhCCCc----CccccchHHHHHHHHHHhhccCccc
Confidence            4 448889999999999988653    1212333667777777777665533

>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting)

Probab=81.38  E-value=10  Score=33.42  Aligned_cols=93  Identities=16%  Similarity=0.169  Sum_probs=69.9

Q ss_pred             HHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHHhCCcHHHH
Q 015951          228 AVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSV  307 (397)
Q Consensus       228 ~~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klr~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~L  307 (397)
                      -....-.|+-+++..+.+..     .++..|..=|+++  ++.++..|+.+|-.++.    +.+..+...+.+.+++..|
T Consensus        21 dw~~ileicD~In~~~~~~k-----~a~ral~krl~~~--n~~vql~AL~LLe~~vk----NCG~~fh~evas~~fl~~l   89 (142)
T cd03569          21 DLASILEICDMIRSKDVQPK-----YAMRALKKRLLSK--NPNVQLYALLLLESCVK----NCGTHFHDEVASREFMDEL   89 (142)
T ss_pred             CHHHHHHHHHHHhCCCCCHH-----HHHHHHHHHHcCC--ChHHHHHHHHHHHHHHH----HCCHHHHHHHhhHHHHHHH
Confidence            34555667777776544322     4566777778776  56789999999999886    3556677778889999999


Q ss_pred             HHhcc-CCChHHHHHHHHHHHHHhc
Q 015951          308 VDLTA-SADLDLQEKALAAIKNLLQ  331 (397)
Q Consensus       308 v~lL~-~~d~dv~E~aL~aL~~L~~  331 (397)
                      +.++. ..++.|+++++..+.+-+.
T Consensus        90 ~~l~~~~~~~~Vk~kil~li~~W~~  114 (142)
T cd03569          90 KDLIKTTKNEEVRQKILELIQAWAL  114 (142)
T ss_pred             HHHHcccCCHHHHHHHHHHHHHHHH
Confidence            99987 4588999999988887763

The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.

>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]

Probab=80.66  E-value=54  Score=35.70  Aligned_cols=106  Identities=23%  Similarity=0.181  Sum_probs=71.9

Q ss_pred             hHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCC
Q 015951          163 NDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNN  242 (397)
Q Consensus       163 ~~~~~lGGl~~Li~lL~s~~~~ir~~Aa~vLg~~aqNNp~~Q~~vl~~g~lp~Ll~LL~s~~~~v~~kAl~ALS~LiR~~  242 (397)
                      .+|+. |-+.-++..+.+++..||.+.+.+|+.++-+-.+.- ..+-.|.+.+|.+-+-+-.+.||..|+.+|+-.= .-
T Consensus        86 ~~~V~-~~~~h~lRg~eskdk~VR~r~lqila~~~d~v~eID-e~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Q-e~  162 (885)
T COG5218          86 EELVA-GTFYHLLRGTESKDKKVRKRSLQILALLSDVVREID-EVLANGLLEKLSERLFDREKAVRREAVKVLCYYQ-EM  162 (885)
T ss_pred             hHHHH-HHHHHHHhcccCcchhHHHHHHHHHHHHHHhcchHH-HHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH-hc
Confidence            44442 566777888899999999999999999986544333 4455578888887666666789999999999763 22


Q ss_pred             hhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHH
Q 015951          243 LAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAV  276 (397)
Q Consensus       243 ~~~~~~f~~~gGi~~L~~lL~s~~~d~klr~kA~  276 (397)
                      ..+.+-++    ...|+.+++.+. +..+|+-|+
T Consensus       163 ~~neen~~----~n~l~~~vqnDP-S~EVRr~al  191 (885)
T COG5218         163 ELNEENRI----VNLLKDIVQNDP-SDEVRRLAL  191 (885)
T ss_pred             cCChHHHH----HHHHHHHHhcCc-HHHHHHHHH
Confidence            22223332    237777777552 345676553

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	397
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	7e-37
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	4e-12
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	2e-10
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	1e-07
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	6e-05
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	5e-12
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	4e-07
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	6e-07
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	2e-06
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	2e-05
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	1e-11
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	2e-09
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	3e-06
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	4e-04
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	5e-04
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	6e-11
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	2e-08
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	5e-07
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	1e-04
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	9e-11
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	3e-09
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	2e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-10
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-04
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	2e-10
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	2e-10
3oqs_A	510	Importin subunit alpha-2; importin alpha, karyophe	9e-10
3oqs_A	510	Importin subunit alpha-2; importin alpha, karyophe	3e-09
3oqs_A	510	Importin subunit alpha-2; importin alpha, karyophe	5e-08
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	1e-09
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	1e-09
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	6e-07
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	1e-06
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	2e-05
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	3e-04
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	2e-06
3nmz_A	458	APC variant protein; protein-protein complex, arma	3e-06
3nmz_A	458	APC variant protein; protein-protein complex, arma	4e-06
3nmz_A	458	APC variant protein; protein-protein complex, arma	2e-05
3tt9_A	233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	6e-06
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	6e-06
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	6e-05
3grl_A	651	General vesicular transport factor P115; vesicle t	8e-04

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Length = 296

 Score =  134 bits (339), Expect = 7e-37
 Identities = 62/263 (23%), Positives = 113/263 (42%), Gaps = 16/263 (6%)

Query: 111 EIKELMEKLKTPSDAQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGG 170
           ++K  +  L  P                    ++ + AL+ L  L E +DNA D  +L G
Sbjct: 29  QMKSCLRVLSQPMPP------TAGEAEQAADQQEREGALELLADLCENMDNAADFCQLSG 82

Query: 171 LSVLVGQ-LNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEA- 228
           + +LVG+ L      +R  +A ++G  SQN   +Q+QVL LGAL KL++++     +   
Sbjct: 83  MHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVR 142

Query: 229 VKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLE 288
           VKAL+ +S L+R   AG   F    G  +L   +     +++   K+  L+ +L     E
Sbjct: 143 VKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLK--VKSAFLLQNLLVGHPE 200

Query: 289 NMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQ-LRTTEALVLKDFCGLD 347
           +   +          ++ +V L  +      E  L A+ +L+           +   GL+
Sbjct: 201 HKGTL-----CSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTDFPQGVRECREPELGLE 255

Query: 348 TALERLRQQLQEVMLEEDQRDYA 370
             L    Q LQ+    +++ ++ 
Sbjct: 256 ELLRHRCQLLQQHEEYQEELEFC 278

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252

 Score = 64.6 bits (158), Expect = 4e-12
 Identities = 42/191 (21%), Positives = 87/191 (45%), Gaps = 16/191 (8%)

Query: 146 QRALQEL-LILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQ 204
             A ++   IL +  +    +   G L  LV  L+ P+  I + + W L   +       
Sbjct: 30  LSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQI 89

Query: 205 KQVLELGALSKLMKMVKSS---FVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDL-MLQD 260
           + V++ GAL  L++++ S     ++EA+ AL  ++S     +       ++AG L  L  
Sbjct: 90  QAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQ----AVIDAGALPALVQ 145

Query: 261 ILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQE 320
           +L + + +I   ++A+  + ++A    E +  V      D   L ++V L +S +  + +
Sbjct: 146 LLSSPNEQIL--QEALWALSNIASGGNEQIQAV-----IDAGALPALVQLLSSPNEQILQ 198

Query: 321 KALAAIKNLLQ 331
           +AL A+ N+  
Sbjct: 199 EALWALSNIAS 209

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252

 Score = 59.6 bits (145), Expect = 2e-10
 Identities = 34/171 (19%), Positives = 78/171 (45%), Gaps = 9/171 (5%)

Query: 160 DNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKM 219
           +    +   G L  LV  L+ P+  I + + W L   +       + V++ GAL  L+++
Sbjct: 87  EQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQL 146

Query: 220 VKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDL-MLQDILGNSSFEIRLHRKAVSL 278
           + S   +   +AL+ +S++        +   ++AG L  L  +L + + +I   ++A+  
Sbjct: 147 LSSPNEQILQEALWALSNIASGGNEQIQAV-IDAGALPALVQLLSSPNEQIL--QEALWA 203

Query: 279 VGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNL 329
           + ++A    E    V+     +   L+ +  L +  +  +Q++A  A++ L
Sbjct: 204 LSNIASGGNEQKQAVK-----EAGALEKLEQLQSHENEKIQKEAQEALEKL 249

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252

 Score = 51.1 bits (123), Expect = 1e-07
 Identities = 36/178 (20%), Positives = 75/178 (42%), Gaps = 25/178 (14%)

Query: 161 NANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMV 220
           + +       L  +  QLN  D   +  +     +   +     + V++ GAL  L++++
Sbjct: 4   SHHHHHHGSELPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLL 63

Query: 221 KS---SFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDL-MLQDILGNSSFEIRLHRKAV 276
            S     ++EA+ AL  ++S        Q    ++AG L  L  +L + + +I   ++A+
Sbjct: 64  SSPNEQILQEALWALSNIAS----GGNEQIQAVIDAGALPALVQLLSSPNEQIL--QEAL 117

Query: 277 SLVGDLAKCQLENMHKVE-----PPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNL 329
             + ++A    E +  V      P L          V L +S +  + ++AL A+ N+
Sbjct: 118 WALSNIASGGNEQIQAVIDAGALPAL----------VQLLSSPNEQILQEALWALSNI 165

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252

 Score = 43.0 bits (102), Expect = 6e-05
 Identities = 21/81 (25%), Positives = 35/81 (43%), Gaps = 3/81 (3%)

Query: 160 DNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKM 219
           +    +   G L  LV  L+ P+  I + + W L   +      ++ V E GAL KL ++
Sbjct: 171 EQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQL 230

Query: 220 VKS---SFVEEAVKALYTVSS 237
                    +EA +AL  + S
Sbjct: 231 QSHENEKIQKEAQEALEKLQS 251

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score = 66.3 bits (162), Expect = 5e-12
 Identities = 33/206 (16%), Positives = 72/206 (34%), Gaps = 8/206 (3%)

Query: 124 DAQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDT 183
             Q++   +  + N+   +E ++     L  L    +    + K GG+  LV  L  P  
Sbjct: 57  SPQMVSAIVRTMQNTN-DVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVD 115

Query: 184 DIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNL 243
            +   +   L     +    +  V   G L K++ ++  + V+        +  L   N 
Sbjct: 116 SVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQ 175

Query: 244 AGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFF 303
             + +     G   L +I+   ++E  L      ++  L+ C   N      P   +   
Sbjct: 176 ESKLIILASGGPQALVNIMRTYTYEK-LLWTTSRVLKVLSVCS-SN-----KPAIVEAGG 228

Query: 304 LKSVVDLTASADLDLQEKALAAIKNL 329
           ++++          L +  L  ++NL
Sbjct: 229 MQALGLHLTDPSQRLVQNCLWTLRNL 254

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score = 50.9 bits (122), Expect = 4e-07
 Identities = 37/190 (19%), Positives = 68/190 (35%), Gaps = 12/190 (6%)

Query: 160 DNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKM 219
                    G L  LV  L   D ++   +A IL   + NN   +  V ++G +  L++ 
Sbjct: 257 AATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRT 316

Query: 220 VKSS-----FVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRK 274
           V  +       E A+ AL  ++S  +     Q    +  G  ++  +L   S    +   
Sbjct: 317 VLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIK-A 375

Query: 275 AVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLRT 334
            V L+ +LA C   N   +     R++  +  +V L   A  D Q +          +  
Sbjct: 376 TVGLIRNLALCP-ANHAPL-----REQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEG 429

Query: 335 TEALVLKDFC 344
                + + C
Sbjct: 430 VRMEEIVEGC 439

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score = 50.2 bits (120), Expect = 6e-07
 Identities = 21/127 (16%), Positives = 46/127 (36%), Gaps = 9/127 (7%)

Query: 118 KLKTPSDAQLIQIAIDDLNNSTLSLEDSQRALQE-----LLILVEPIDNANDLSKLGGLS 172
           +L   +     +                   + E     L IL   + N   +  L  + 
Sbjct: 404 QLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIP 463

Query: 173 VLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSS---FVEEAV 229
           + V  L  P  +I++++A +L + +Q +    + +   GA + L +++ S        A 
Sbjct: 464 LFVQLLYSPIENIQRVAAGVLCELAQ-DKEAAEAIEAEGATAPLTELLHSRNEGVATYAA 522

Query: 230 KALYTVS 236
             L+ +S
Sbjct: 523 AVLFRMS 529

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score = 49.0 bits (117), Expect = 2e-06
 Identities = 23/175 (13%), Positives = 60/175 (34%), Gaps = 17/175 (9%)

Query: 160 DNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKM 219
              +       +  L   LN  D  +   +A ++ + S+        +     +S +++ 
Sbjct: 8   YQDDAELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRT 67

Query: 220 VKSS----FVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDL-MLQDILGNSSFEIRLHRK 274
           ++++            L+ +S     +  G      ++G +  L  +LG+    +  +  
Sbjct: 68  MQNTNDVETARCTAGTLHNLSH----HREGLLAI-FKSGGIPALVKMLGSPVDSVLFY-- 120

Query: 275 AVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNL 329
           A++ + +L   Q      V     R    L+ +V L    ++         ++ L
Sbjct: 121 AITTLHNLLLHQEGAKMAV-----RLAGGLQKMVALLNKTNVKFLAITTDCLQIL 170

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score = 45.2 bits (107), Expect = 2e-05
 Identities = 33/236 (13%), Positives = 72/236 (30%), Gaps = 43/236 (18%)

Query: 124 DAQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNA----NDLSKLGGLSVLVGQLN 179
               I+  +  +  +    + ++ A+  L  L      A    N +    GL V+V  L+
Sbjct: 306 QVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLH 365

Query: 180 HPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLI 239
            P       +   L +     P     + E GA+ +L++++  +  +   +     +   
Sbjct: 366 PPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQ 425

Query: 240 RNNLAGQEMFYVEAGDLM---------------------LQDILGNSSFEIRLHRKAVSL 278
                  E         +                        +L +    I+  R A  +
Sbjct: 426 FVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQ--RVAAGV 483

Query: 279 VGDLAKCQLENMHKVE-----PPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNL 329
           + +LA+ + E    +E      PL           +L  S +  +   A A +  +
Sbjct: 484 LCELAQDK-EAAEAIEAEGATAPL----------TELLHSRNEGVATYAAAVLFRM 528

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score = 65.3 bits (159), Expect = 1e-11
 Identities = 33/206 (16%), Positives = 72/206 (34%), Gaps = 8/206 (3%)

Query: 124 DAQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDT 183
             Q++   +  + N+   +E ++     L  L    +    + K GG+  LV  L  P  
Sbjct: 54  SPQMVSAIVRTMQNTN-DVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVD 112

Query: 184 DIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNL 243
            +   +   L     +    +  V   G L K++ ++  + V+        +  L   N 
Sbjct: 113 SVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQ 172

Query: 244 AGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFF 303
             + +     G   L +I+   ++E  L      ++  L+ C   N      P   +   
Sbjct: 173 ESKLIILASGGPQALVNIMRTYTYEK-LLWTTSRVLKVLSVCS-SN-----KPAIVEAGG 225

Query: 304 LKSVVDLTASADLDLQEKALAAIKNL 329
           ++++          L +  L  ++NL
Sbjct: 226 MQALGLHLTDPSQRLVQNCLWTLRNL 251

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score = 58.0 bits (140), Expect = 2e-09
 Identities = 37/190 (19%), Positives = 68/190 (35%), Gaps = 12/190 (6%)

Query: 160 DNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKM 219
                    G L  LV  L   D ++   +A IL   + NN   +  V ++G +  L++ 
Sbjct: 254 AATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRT 313

Query: 220 VKSS-----FVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRK 274
           V  +       E A+ AL  ++S  +     Q    +  G  ++  +L   S    +   
Sbjct: 314 VLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIK-A 372

Query: 275 AVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLRT 334
            V L+ +LA C   N   +     R++  +  +V L   A  D Q +          +  
Sbjct: 373 TVGLIRNLALCP-ANHAPL-----REQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEG 426

Query: 335 TEALVLKDFC 344
                + + C
Sbjct: 427 VRMEEIVEGC 436

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score = 48.4 bits (115), Expect = 3e-06
 Identities = 22/175 (12%), Positives = 60/175 (34%), Gaps = 17/175 (9%)

Query: 160 DNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKM 219
              +       +  L   LN  D  +   +A ++ + S+        +     +S +++ 
Sbjct: 5   YQDDAELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRT 64

Query: 220 VKSS----FVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDL-MLQDILGNSSFEIRLHRK 274
           ++++            L+ +S    ++  G      ++G +  L  +LG+    +  +  
Sbjct: 65  MQNTNDVETARCTAGTLHNLS----HHREGLLAI-FKSGGIPALVKMLGSPVDSVLFY-- 117

Query: 275 AVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNL 329
           A++ + +L   Q            R    L+ +V L    ++         ++ L
Sbjct: 118 AITTLHNLLLHQEGA-----KMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQIL 167

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score = 41.8 bits (98), Expect = 4e-04
 Identities = 30/159 (18%), Positives = 57/159 (35%), Gaps = 16/159 (10%)

Query: 90  LKETAQDVQRLSPSELKKRQMEIKELMEKLKTPSDAQLIQIAIDDLNNSTLSLEDSQRAL 149
           L    QD QR +     ++Q      ME++       L  +A D  N   +   ++    
Sbjct: 403 LVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLF 462

Query: 150 QELL----------------ILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWIL 193
            +LL                 L +  + A  +   G  + L   L+  +  +   +A +L
Sbjct: 463 VQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVL 522

Query: 194 GKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKAL 232
            + S++ P   K+ L +   S L +    ++ E A   L
Sbjct: 523 FRMSEDKPQDYKKRLSVELTSSLFRTEPMAWNETADLGL 561

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score = 41.1 bits (96), Expect = 5e-04
 Identities = 33/242 (13%), Positives = 80/242 (33%), Gaps = 51/242 (21%)

Query: 112 IKELMEKLKTPSDAQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGL 171
           +  +++ L  PS   LI+  +  + N  L+L  +  A                L + G +
Sbjct: 354 LPVVVKLLHPPSHWPLIKATVGLIRN--LALCPANHAP---------------LREQGAI 396

Query: 172 SVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLE---------------------L 210
             LV  L     D ++ ++    +      +  ++++E                     L
Sbjct: 397 PRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGL 456

Query: 211 GALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDL-MLQDILGNSSFEI 269
             +   ++++ S        A   +  L ++  A + +     G    L ++L + +  +
Sbjct: 457 NTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAI--EAEGATAPLTELLHSRNEGV 514

Query: 270 RLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNL 329
                A ++        L  M + +P  ++ R  ++    L  +  +   E A   +   
Sbjct: 515 A--TYAAAV--------LFRMSEDKPQDYKKRLSVELTSSLFRTEPMAWNETADLGLDIG 564

Query: 330 LQ 331
            Q
Sbjct: 565 AQ 566

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780

 Score = 63.1 bits (153), Expect = 6e-11
 Identities = 33/206 (16%), Positives = 72/206 (34%), Gaps = 8/206 (3%)

Query: 124 DAQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDT 183
             Q++   +  + N+   +E ++     L  L    +    + K GG+  LV  L  P  
Sbjct: 190 SPQMVSAIVRTMQNTN-DVETARCTSGTLHNLSHHREGLLAIFKSGGIPALVNMLGSPVD 248

Query: 184 DIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNL 243
            +   +   L     +    +  V   G L K++ ++  + V+        +  L   N 
Sbjct: 249 SVLFHAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQ 308

Query: 244 AGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFF 303
             + +     G   L +I+   ++E  L      ++  L+ C   N      P   +   
Sbjct: 309 ESKLIILASGGPQALVNIMRTYTYEK-LLWTTSRVLKVLSVCS-SN-----KPAIVEAGG 361

Query: 304 LKSVVDLTASADLDLQEKALAAIKNL 329
           ++++          L +  L  ++NL
Sbjct: 362 MQALGLHLTDPSQRLVQNCLWTLRNL 387

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780

 Score = 55.4 bits (133), Expect = 2e-08
 Identities = 36/178 (20%), Positives = 66/178 (37%), Gaps = 12/178 (6%)

Query: 160 DNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKM 219
                    G L  LV  L   D ++   +A IL   + NN   +  V ++G +  L++ 
Sbjct: 390 AATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRT 449

Query: 220 VKSS-----FVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRK 274
           V  +       E A+ AL  ++S  ++    Q    +  G  ++  +L   S    +   
Sbjct: 450 VLRAGDREDITEPAICALRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKA- 508

Query: 275 AVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQL 332
            V L+ +LA C   N   +     R++  +  +V L   A  D Q +          +
Sbjct: 509 TVGLIRNLALCP-ANHAPL-----REQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFV 560

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780

 Score = 50.8 bits (121), Expect = 5e-07
 Identities = 37/311 (11%), Positives = 98/311 (31%), Gaps = 18/311 (5%)

Query: 60  STAAAIVNDHDELDGGFSSIDGMLQWAIAKLKETAQD-VQRLSPSELKKRQMEIKELMEK 118
           +T A  ++     +        + +W     +   Q+ V  +       R   ++  M  
Sbjct: 40  TTTAPSLSGKGNPEDDDVDNQVLYEWEQGFNQSFNQEQVADIDGQYAMTRAQRVRAAMFP 99

Query: 119 LKTPSDAQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQL 178
                  Q+     D  + + +        + +  ++       +       +  L   L
Sbjct: 100 ETLDEGMQIPSTQFDSAHPTNVQRLAEPSQMLKHAVVNLINYQDDAELATRAIPELTKLL 159

Query: 179 NHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSF----VEEAVKALYT 234
           N  D  +   +A ++ + S+        +     +S +++ ++++            L+ 
Sbjct: 160 NDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTSGTLHN 219

Query: 235 VSSLIRNNLAGQEMFYVEAGDL-MLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKV 293
           +S     +  G      ++G +  L ++LG+    +  H  A++ + +L   Q       
Sbjct: 220 LSH----HREGLLAI-FKSGGIPALVNMLGSPVDSVLFH--AITTLHNLLLHQEGA---- 268

Query: 294 EPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLRTTEALVLKDFCGLDTALERL 353
                R    L+ +V L    ++         ++ L        L++    G    +  +
Sbjct: 269 -KMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIM 327

Query: 354 RQQLQEVMLEE 364
           R    E +L  
Sbjct: 328 RTYTYEKLLWT 338

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780

 Score = 43.5 bits (102), Expect = 1e-04
 Identities = 30/196 (15%), Positives = 63/196 (32%), Gaps = 39/196 (19%)

Query: 160 DNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKM 219
              N +    GL V+V  L+ P       +   L +     P     + E GA+ +L+++
Sbjct: 479 MAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQL 538

Query: 220 VKSSFVEEAVKALYTVSSL-----------------IRNNLAGQEMFYVEAGDL----ML 258
           +  +  +   +     +                     + LA      +    L    + 
Sbjct: 539 LVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEACTGALHILARDIHNRIVIRGLNTIPLF 598

Query: 259 QDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVE-----PPLFRDRFFLKSVVDLTAS 313
             +L +    I+  R A  ++ +LA+ + E    +E      PL           +L  S
Sbjct: 599 VQLLYSPIENIQ--RVAAGVLCELAQDK-EAAEAIEAEGATAPL----------TELLHS 645

Query: 314 ADLDLQEKALAAIKNL 329
            +  +   A A +  +
Sbjct: 646 RNEGVATYAAAVLFRM 661

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210

 Score = 60.0 bits (146), Expect = 9e-11
 Identities = 42/191 (21%), Positives = 85/191 (44%), Gaps = 20/191 (10%)

Query: 169 GGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEA 228
             L  +V QLN PD    + +   L + +       + V++ GAL  L++++ S   +  
Sbjct: 12  SELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQIL 71

Query: 229 VKALYTVSSLIRNNLAGQEMFYVEAGDL-MLQDILGNSSFEIRLHRKAVSLVGDLAKCQL 287
            +AL+ +S++       Q    ++AG L  L  +L + + +I   ++A+  + ++A    
Sbjct: 72  QEALWALSNIASGG-NEQIQAVIDAGALPALVQLLSSPNEQIL--QEALWALSNIASGGN 128

Query: 288 ENMHKVE-----PPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLRTTEALVLKD 342
           E +  V      P L          V L +S +  + ++AL A+ N+      +   +K+
Sbjct: 129 EQIQAVIDAGALPAL----------VQLLSSPNEQILQEALWALSNIASGGNEQKQAVKE 178

Query: 343 FCGLDTALERL 353
              L+  LE+L
Sbjct: 179 AGALE-KLEQL 188

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210

 Score = 55.7 bits (135), Expect = 3e-09
 Identities = 39/189 (20%), Positives = 81/189 (42%), Gaps = 20/189 (10%)

Query: 148 ALQEL-LILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQ 206
           AL++L  I     +    +   G L  LV  L+ P+  I + + W L   +       + 
Sbjct: 32  ALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQA 91

Query: 207 VLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDL-MLQDILGNS 265
           V++ GAL  L++++ S   +   +AL+ +S++       Q    ++AG L  L  +L + 
Sbjct: 92  VIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNE-QIQAVIDAGALPALVQLLSSP 150

Query: 266 SFEIRLHRKAVSLVGDLAKCQLENMHKVE-----PPLFRDRFFLKSVVDLTASADLDLQE 320
           + +I   ++A+  + ++A    E    V+       L            L +  +  +Q+
Sbjct: 151 NEQIL--QEALWALSNIASGGNEQKQAVKEAGALEKL----------EQLQSHENEKIQK 198

Query: 321 KALAAIKNL 329
           +A  A++ L
Sbjct: 199 EAQEALEKL 207

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210

 Score = 46.9 bits (112), Expect = 2e-06
 Identities = 22/87 (25%), Positives = 36/87 (41%), Gaps = 3/87 (3%)

Query: 154 ILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGAL 213
           I     +    +   G L  LV  L+ P+  I + + W L   +      ++ V E GAL
Sbjct: 123 IASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGAL 182

Query: 214 SKLMKMVKSS---FVEEAVKALYTVSS 237
            KL ++         +EA +AL  + S
Sbjct: 183 EKLEQLQSHENEKIQKEAQEALEKLQS 209

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 62.2 bits (150), Expect = 1e-10
 Identities = 73/442 (16%), Positives = 142/442 (32%), Gaps = 114/442 (25%)

Query: 27  RAERVNNSSSAGLFWSTAKEDEDQPRKAERNDDSTAAAIVNDHDELDGGFSSIDGMLQWA 86
            + +V       +FW   K   + P             I  +        S+I   +   
Sbjct: 172 LSYKVQCKMDFKIFWLNLKNC-NSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSI 230

Query: 87  IAKLKETAQ------------DVQRLSPSELKKRQMEIKELMEKLKTPSDAQLIQIAIDD 134
            A+L+   +            +VQ  +        +  K L+    T    Q+     D 
Sbjct: 231 QAELRRLLKSKPYENCLLVLLNVQ--NAKAWNAFNLSCKILL----TTRFKQV----TDF 280

Query: 135 LNNST---LSLEDSQRAL-----QELLILVEPIDNANDLSK--LGG----LSVLVGQL-N 179
           L+ +T   +SL+     L     + LL+         DL +  L      LS++   + +
Sbjct: 281 LSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCR-PQDLPREVLTTNPRRLSIIAESIRD 339

Query: 180 HPDT-------DIRKISAWILGKASQNN--PLVQKQVLELGAL--------SKLMKMV-- 220
              T       +  K++  I  ++S N   P   +++ +  ++        + L+ ++  
Sbjct: 340 GLATWDNWKHVNCDKLTTII--ESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWF 397

Query: 221 --KSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSL 278
               S V   V  L+  S + +      +   +    + L ++      E  LHR  V  
Sbjct: 398 DVIKSDVMVVVNKLHKYSLVEKQP----KESTISIPSIYL-ELKVKLENEYALHRSIVDH 452

Query: 279 V--------GDLAKCQLEN---------MHKVEP----PLFRDRF----FLKSVVDLTAS 313
                     DL    L+          +  +E      LFR  F    FL+  +   ++
Sbjct: 453 YNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDST 512

Query: 314 ADLDLQEKALAAIKNLLQ-LR-----------TTEALV--LKDF---CGLDTALERLRQQ 356
           A       A  +I N LQ L+             E LV  + DF      +    +    
Sbjct: 513 A-----WNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDL 567

Query: 357 LQEVMLEEDQRDYAMDVEALRR 378
           L+  ++ ED+  +    + ++R
Sbjct: 568 LRIALMAEDEAIFEEAHKQVQR 589

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 44.5 bits (104), Expect = 6e-05
 Identities = 54/357 (15%), Positives = 108/357 (30%), Gaps = 108/357 (30%)

Query: 15  LLVL------------------LMITMAIGRAERVNNSS-----------------SAGL 39
           LLVL                  L+ T      + ++ ++                    L
Sbjct: 247 LLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSL 306

Query: 40  FWSTAK----EDEDQPRKAERNDD---STAAAIVNDHDELDGGFSSIDGMLQWAIAKLKE 92
                K      +D PR+    +    S  A  + D        ++ D        KL  
Sbjct: 307 L---LKYLDCRPQDLPREVLTTNPRRLSIIAESIRDG------LATWDNWKHVNCDKLTT 357

Query: 93  TAQ-DVQRLSPSELKKR--QMEI--------KELMEKLKTPSDAQLIQIAIDDLNNSTLS 141
             +  +  L P+E +K   ++ +          L+  +        + + ++ L+  +L 
Sbjct: 358 IIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLV 417

Query: 142 LEDSQRALQEL----LILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKAS 197
            +  + +   +    L L   ++N   L +      +V   N P    +   +  L    
Sbjct: 418 EKQPKESTISIPSIYLELKVKLENEYALHR-----SIVDHYNIP----KTFDSDDLIPPY 468

Query: 198 QNNPLVQ------KQVLELGALSKLMKMV--KSSFVEEAVK----ALYTVSSLIRNNLAG 245
            +           K  +E      L +MV     F+E+ ++    A     S++  N   
Sbjct: 469 LDQYFYSHIGHHLKN-IEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSIL--NTLQ 525

Query: 246 QEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRF 302
           Q  FY          I  N   + +  R    LV  +    L+ + K+E  L   ++
Sbjct: 526 QLKFY-------KPYICDN---DPKYER----LVNAI----LDFLPKIEENLICSKY 564

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 41.4 bits (96), Expect = 5e-04
 Identities = 52/436 (11%), Positives = 114/436 (26%), Gaps = 136/436 (31%)

Query: 39  LFWSTAKEDEDQPRKAERNDDSTAAAIVNDHDELDGGF--SSIDGMLQWAIAKLKETAQD 96
           LFW+                +      V +   ++  F  S I    +      +   + 
Sbjct: 67  LFWTL-----------LSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQ 115

Query: 97  VQRL--SPSELKKRQMEIKELMEKLKTP----SDAQLIQI-----------AIDDLNNS- 138
             RL        K  +   +   KL+        A+ + I           A+D   +  
Sbjct: 116 RDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYK 175

Query: 139 ------------TLSLEDSQRA----LQELLILVEP------------IDNANDLSKLGG 170
                        L   +S       LQ+LL  ++P                + +     
Sbjct: 176 VQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQA--E 233

Query: 171 LSVLVGQLNHPDT-----DIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFV 225
           L  L+    + +      +++  +A                   L    K++   +   V
Sbjct: 234 LRRLLKSKPYENCLLVLLNVQ--NAKAW------------NAFNLS--CKILLTTRFKQV 277

Query: 226 EEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIR-----LHRKAVSLVG 280
            + + A  T    + ++         +    +L   L     ++       + + +S++ 
Sbjct: 278 TDFLSAATTTHISLDHHSMT---LTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIA 334

Query: 281 DLAK---CQLENMHKV----------------EPPLFRDRF-----FLKSVVDLTAS--- 313
           +  +      +N   V                EP  +R  F     F  S   +      
Sbjct: 335 ESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPS-AHIPTILLS 393

Query: 314 ---ADLDLQEKALAAIKNLLQLRTTEALVLKDFCG---------LDTALERL-RQQLQEV 360
               D+   +  +  + N L   +   LV K             L+  ++      L   
Sbjct: 394 LIWFDVIKSDVMV--VVNKLHKYS---LVEKQPKESTISIPSIYLELKVKLENEYALHRS 448

Query: 361 MLEEDQRDYAMDVEAL 376
           +++        D + L
Sbjct: 449 IVDHYNIPKTFDSDDL 464

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450

 Score = 61.1 bits (148), Expect = 2e-10
 Identities = 37/220 (16%), Positives = 81/220 (36%), Gaps = 24/220 (10%)

Query: 112 IKELMEKLKTPSDAQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGL 171
           +   +E LK   +  L   +   L N         R + +                 G +
Sbjct: 66  VARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTRIVIQA----------------GAV 109

Query: 172 SVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKS-SFVEEAVK 230
            + +  L+    D+++ + W LG  + ++ + +  VL+   L  L+++    + +     
Sbjct: 110 PIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRN 169

Query: 231 ALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENM 290
           A++ +S+L R      E   V     +L  +L  S  ++     A   +  L+    + +
Sbjct: 170 AVWALSNLCRGKSPPPEFAKVSPCLNVLSWLLFVSDTDVLAD--ACWALSYLSDGPNDKI 227

Query: 291 HKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLL 330
             V      D    + +V+L    D  +   AL A+ N++
Sbjct: 228 QAV-----IDAGVCRRLVELLMHNDYKVVSPALRAVGNIV 262

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450

 Score = 61.1 bits (148), Expect = 2e-10
 Identities = 35/179 (19%), Positives = 67/179 (37%), Gaps = 6/179 (3%)

Query: 154 ILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGAL 213
           +   P D    +   G    LV  L H D  +   +   +G     + +  + +L   AL
Sbjct: 219 LSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTGDDIQTQVILNCSAL 278

Query: 214 SKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHR 273
             L+ ++ S       +A +T+S++   N A  +          L  IL  + F  R  +
Sbjct: 279 QSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQTAEFRTR--K 336

Query: 274 KAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQL 332
           +A   + +          K       +   +K + DL    D  + + AL  ++N+L+L
Sbjct: 337 EAAWAITNATSGGSAEQIK----YLVELGCIKPLCDLLTVMDSKIVQVALNGLENILRL 391

>3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510

 Score = 59.3 bits (143), Expect = 9e-10
 Identities = 48/294 (16%), Positives = 102/294 (34%), Gaps = 23/294 (7%)

Query: 45  KEDEDQPRKAERNDDSTAAAIVNDHDELDGGFSSIDGMLQWAIAKLKETAQDVQRLSPSE 104
            E +         DD   A      ++      +++  ++  +  +     + Q  +   
Sbjct: 26  FERQHMDSPDLGTDDDDKAMADIGSNQ-----GTVNWSVEDIVKGINSNNLESQLQATQA 80

Query: 105 LKKRQMEIKELMEKLKTPSDAQLIQIAIDDLNNSTLS--LEDSQRALQELLILVEPIDNA 162
              R++  +E    +     A LI   +  L  +  S    +S  AL    I     +  
Sbjct: 81  A--RKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTN--IASGTSEQT 136

Query: 163 NDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKS 222
             +   G +   +  L  P   I + + W LG  + +    +  V++ GA+  L+ ++  
Sbjct: 137 KAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAV 196

Query: 223 SFVEEAVK-----ALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVS 277
             +            +T+S+L RN      +  VE     L  +L ++  E+     +  
Sbjct: 197 PDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLAD--SCW 254

Query: 278 LVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQ 331
            +  L     E +  V       +  +  +V L  + +L +   AL AI N++ 
Sbjct: 255 AISYLTDGPNERIEMV-----VKKGVVPQLVKLLGATELPIVTPALRAIGNIVT 303

>3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510

 Score = 57.7 bits (139), Expect = 3e-09
 Identities = 41/223 (18%), Positives = 89/223 (39%), Gaps = 8/223 (3%)

Query: 132 IDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKL-GGLSVLVGQLNHPDTDIRKISA 190
           +   + STL+    +     L  L    + A  L  +   L  LV  L+H D ++   S 
Sbjct: 194 LAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSC 253

Query: 191 WILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFY 250
           W +   +       + V++ G + +L+K++ ++ +     AL  + +++       +   
Sbjct: 254 WAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVI 313

Query: 251 VEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDL 310
                 +   +L N    I+  ++A   + ++   + + + +V      +   +  +V +
Sbjct: 314 DAGALAVFPSLLTNPKTNIQ--KEATWTMSNITAGRQDQIQQV-----VNHGLVPFLVGV 366

Query: 311 TASADLDLQEKALAAIKNLLQLRTTEALVLKDFCGLDTALERL 353
            + AD   Q++A  AI N     T E +V    CG+   L  L
Sbjct: 367 LSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNL 409

>3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510

 Score = 53.9 bits (129), Expect = 5e-08
 Identities = 27/180 (15%), Positives = 72/180 (40%), Gaps = 6/180 (3%)

Query: 154 ILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGAL 213
           I+    +    +   G L+V    L +P T+I+K + W +   +       +QV+  G +
Sbjct: 301 IVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLV 360

Query: 214 SKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLM-LQDILGNSSFEIRLH 272
             L+ ++  +  +   +A + +++        Q ++ V  G +  L ++L     +I   
Sbjct: 361 PFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKII-- 418

Query: 273 RKAVSLVGDLAKCQLENMHKVEP--PLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLL 330
           +  +  + ++ +   E + + E    +  +   L  +  L    +  + + +L  I+   
Sbjct: 419 QVILDAISNIFQAA-EKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKYF 477

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530

 Score = 58.9 bits (142), Expect = 1e-09
 Identities = 33/179 (18%), Positives = 72/179 (40%), Gaps = 4/179 (2%)

Query: 154 ILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGAL 213
           +   P +    +  +     LV  L+H  T ++  +   +G     N L  + V+  G L
Sbjct: 284 LSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVL 343

Query: 214 SKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHR 273
             L  ++ S       +A +T+S++   N    +   ++A  +     L     E +  +
Sbjct: 344 PALRLLLSSPKENIKKEACWTISNITAGNTEQIQAV-IDANLIPPLVKL-LEVAEYKTKK 401

Query: 274 KAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQL 332
           +A   + + +   L+    +       +  +K + DL   AD  + E  L A++N+L++
Sbjct: 402 EACWAISNASSGGLQRPDIIR--YLVSQGCIKPLCDLLEIADNRIIEVTLDALENILKM 458

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530

 Score = 58.9 bits (142), Expect = 1e-09
 Identities = 38/277 (13%), Positives = 94/277 (33%), Gaps = 9/277 (3%)

Query: 55  ERNDDSTAAAIVNDHDELDGGFSSIDGMLQWAIAKLKETAQDVQRLSPSELKKRQMEIKE 114
             +   +     +        +S +   L     +L       Q  +  +   RQ+  +E
Sbjct: 61  PTDGADSDEEDESSVSADQQFYSQLQQELPQMTQQLNSDDMQEQLSATVKF--RQILSRE 118

Query: 115 LMEKLKTPSDAQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVL 174
               +     A ++   ++ +  +   +   + A     I          +     + + 
Sbjct: 119 HRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLF 178

Query: 175 VGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYT 234
           +  L     ++++ + W LG  + ++   +  VL+  A+  ++ +  S+       A +T
Sbjct: 179 IQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWT 238

Query: 235 VSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVE 294
           +S+L R      +   V      L  ++ +   E  +   A   +  L+    E +    
Sbjct: 239 LSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVD--ACWAISYLSDGPQEAIQ--- 293

Query: 295 PPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQ 331
                D    K +V+L +     +Q  AL A+ N++ 
Sbjct: 294 --AVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVT 328

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354

 Score = 50.2 bits (120), Expect = 6e-07
 Identities = 31/176 (17%), Positives = 66/176 (37%), Gaps = 19/176 (10%)

Query: 165 LSKLGGLSVLVGQLNHPDTDIRKISAWILGK-ASQNNPLVQKQVLELGALSKLMKMVKSS 223
            S  G +  LV QL     D++++ A +L   + + +   +K + E+G++  LM+     
Sbjct: 123 CSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEV 182

Query: 224 ----FVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDL-----MLQDILGNSSFEIRLHR- 273
                ++  + AL+ +S+    N   +       G L      L      ++  I     
Sbjct: 183 KKESTLKSVLSALWNLSAHCTEN---KADICAVDGALAFLVGTLTYRSQTNTLAIIESGG 239

Query: 274 KAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNL 329
             +  V  L     ++   +     R+   L++++    S  L +   A   + NL
Sbjct: 240 GILRNVSSLIATNEDHRQIL-----RENNCLQTLLQHLKSHSLTIVSNACGTLWNL 290

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354

 Score = 49.1 bits (117), Expect = 1e-06
 Identities = 26/122 (21%), Positives = 50/122 (40%), Gaps = 2/122 (1%)

Query: 125 AQLIQIAIDDLNNSTLS-LEDSQRALQELL-ILVEPIDNANDLSKLGGLSVLVGQLNHPD 182
           A L+         +TL+ +E     L+ +  ++    D+   L +   L  L+  L    
Sbjct: 217 AFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHS 276

Query: 183 TDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNN 242
             I   +   L   S  NP  Q+ + ++GA+S L  ++ S     A+ +   + +L+ N 
Sbjct: 277 LTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANR 336

Query: 243 LA 244
            A
Sbjct: 337 PA 338

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354

 Score = 45.2 bits (107), Expect = 2e-05
 Identities = 38/224 (16%), Positives = 74/224 (33%), Gaps = 30/224 (13%)

Query: 123 SDAQLIQIAIDDLNNSTLSL-EDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHP 181
           S    ++  +  L + +  L +     L+ L    +  ++   L ++G +  L+      
Sbjct: 124 SMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADV-NSKKTLREVGSVKALMECALEV 182

Query: 182 -DTDIRKISAWILGKASQNNPLVQKQ-VLELGALSKLMKMVKSSF-------VEEAVKAL 232
                 K     L   S +    +       GAL+ L+  +           +E     L
Sbjct: 183 KKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGIL 242

Query: 233 YTVSSLIRNNLAGQEMFYVEAGDL-MLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMH 291
             VSSLI  N   +++   E   L  L   L + S  I     A   + +L+    ++  
Sbjct: 243 RNVSSLIATNEDHRQIL-RENNCLQTLLQHLKSHSLTIV--SNACGTLWNLSARNPKDQE 299

Query: 292 KVE-----PPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLL 330
            +        L           +L  S    +   + AA++NL+
Sbjct: 300 ALWDMGAVSML----------KNLIHSKHKMIAMGSAAALRNLM 333

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354

 Score = 41.8 bits (98), Expect = 3e-04
 Identities = 28/211 (13%), Positives = 61/211 (28%), Gaps = 41/211 (19%)

Query: 145 SQRALQELLILVEPIDNANDLSKL-----GGLSVLVGQLNHPDTDIRKISAWILGKASQN 199
                  L +L +         +       G+      +  P       +  +L K S  
Sbjct: 3   HHHHHHMLHLLEQIRAYCETCWEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKLSF- 61

Query: 200 NPLVQKQVLELGALSKLMKMVKSSF--------------VEEAVKALYTVSSLIRNNLAG 245
           +   +  + ELG L  + ++++                    A  AL   ++L   ++A 
Sbjct: 62  DEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMAL---TNLTFGDVAN 118

Query: 246 QEMFYVEAGDL-MLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENM------HKVEPPLF 298
           +       G +  L   L + S ++   +   S++ +L+     N             L 
Sbjct: 119 KATLCSMKGCMRALVAQLKSESEDL--QQVIASVLRNLSWRADVNSKKTLREVGSVKAL- 175

Query: 299 RDRFFLKSVVDLTASADLDLQEKALAAIKNL 329
                   +            +  L+A+ NL
Sbjct: 176 --------MECALEVKKESTLKSVLSALWNL 198

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457

 Score = 48.7 bits (115), Expect = 2e-06
 Identities = 24/168 (14%), Positives = 59/168 (35%), Gaps = 10/168 (5%)

Query: 171 LSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVK 230
           +   V  L+  D   + I A+ +      +   ++QV +LG + KL+ +++S        
Sbjct: 4   IPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQA 63

Query: 231 ALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENM 290
           A   + +L+  +   +     + G      +L  +     + ++   L+ +L+       
Sbjct: 64  AAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTG-NAEIQKQLTGLLWNLSSTDELKE 122

Query: 291 HKVE---PPLFR------DRFFLKSVVDLTASADLDLQEKALAAIKNL 329
             +    P L          +   +        D ++   A   ++NL
Sbjct: 123 ELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNL 170

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458

 Score = 48.0 bits (114), Expect = 3e-06
 Identities = 22/108 (20%), Positives = 44/108 (40%), Gaps = 1/108 (0%)

Query: 136 NNSTLSLEDSQRALQELL-ILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILG 194
            N+   +E     L+ +  ++    D+   L +   L  L+  L      I   +   L 
Sbjct: 345 TNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLW 404

Query: 195 KASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNN 242
             S  NP  Q+ + ++GA+S L  ++ S     A+ +   + +L+ N 
Sbjct: 405 NLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANR 452

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458

 Score = 47.6 bits (113), Expect = 4e-06
 Identities = 32/171 (18%), Positives = 67/171 (39%), Gaps = 17/171 (9%)

Query: 169 GGLSVLVGQLNHPDTDIRKISAWILGK-ASQNNPLVQKQVLELGALSKLMKMVKSS---- 223
           G +  LV QL     D++++ A +L   + + +   +K + E+G++  LM+         
Sbjct: 243 GCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKES 302

Query: 224 FVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRK-----AVSL 278
            ++  + AL+ +S+    N A  ++  V+     L   L   S    L         +  
Sbjct: 303 TLKSVLSALWNLSAHCTENKA--DICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRN 360

Query: 279 VGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNL 329
           V  L     ++   +     R+   L++++    S  L +   A   + NL
Sbjct: 361 VSSLIATNEDHRQIL-----RENNCLQTLLQHLKSHSLTIVSNACGTLWNL 406

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458

 Score = 45.3 bits (107), Expect = 2e-05
 Identities = 34/192 (17%), Positives = 62/192 (32%), Gaps = 28/192 (14%)

Query: 153 LILVEPIDNANDLSKLGGLSVLVGQLNHP-DTDIRKISAWILGKASQNNPLVQKQ-VLEL 210
           L     +++   L ++G +  L+            K     L   S +    +       
Sbjct: 270 LSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVD 329

Query: 211 GALSKLMKMVKSSF-------VEEAVKALYTVSSLIRNNLAGQEMFYVEAGDL-MLQDIL 262
           GAL+ L+  +           +E     L  VSSLI  N   +++   E   L  L   L
Sbjct: 330 GALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQIL-RENNCLQTLLQHL 388

Query: 263 GNSSFEIRLHRKAVSLVGDLAKCQLENMHKVE-----PPLFRDRFFLKSVVDLTASADLD 317
            + S  I     A   + +L+    ++   +        L           +L  S    
Sbjct: 389 KSHSLTIV--SNACGTLWNLSARNPKDQEALWDMGAVSML----------KNLIHSKHKM 436

Query: 318 LQEKALAAIKNL 329
           +   + AA++NL
Sbjct: 437 IAMGSAAALRNL 448

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} Length = 233

 Score = 46.1 bits (109), Expect = 6e-06
 Identities = 17/123 (13%), Positives = 48/123 (39%), Gaps = 5/123 (4%)

Query: 125 AQLIQIAIDDLNNSTLSLEDSQRALQELLIL-VEPIDNANDLSKLGGLSVLVGQLNHPDT 183
              ++ A+  L    +       A   +     +  +    +++L G+  L+  L   + 
Sbjct: 7   EMTLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNE 66

Query: 184 DIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSS----FVEEAVKALYTVSSLI 239
           D+++     L      +   + +V EL  + +L++++K +      ++    L+ +SS  
Sbjct: 67  DVQRAVCGALRNLVFEDNDNKLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSND 126

Query: 240 RNN 242
           +  
Sbjct: 127 KLK 129

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Length = 810

 Score = 47.5 bits (112), Expect = 6e-06
 Identities = 33/276 (11%), Positives = 88/276 (31%), Gaps = 20/276 (7%)

Query: 84  QWAIAKLKETAQDVQRLSPSELKKRQMEIKELMEKLKTPSDAQLIQIAIDDLNNSTLSLE 143
           Q  + ++ E A+  ++  P E +   ++     +++   ++  +           T S  
Sbjct: 455 QEMLPEMIELAKFAKQHIPEEHELDDVDFIN--KRITVLANEGITTALCALA--KTESHN 510

Query: 144 DSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGK--ASQNNP 201
             +   + L  +    +    + + GG+  L+          ++ +   L +   + N  
Sbjct: 511 SQELIARVLNAVCGLKELRGKVVQEGGVKALLRMALEGTEKGKRHATQALARIGITINPE 570

Query: 202 LVQKQVLELGALSKLMKMVKSSF----VEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLM 257
           +       L  +  L+ +++         E++ AL  ++S+  +    ++    E G   
Sbjct: 571 VSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMNESV---RQRIIKEQGVSK 627

Query: 258 LQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLD 317
           ++  L      + L R A   + +L          V      +   +K +  L    D +
Sbjct: 628 IEYYL--MEDHLYLTRAAAQCLCNLVMS-----EDVIKMFEGNNDRVKFLALLCEDEDEE 680

Query: 318 LQEKALAAIKNLLQLRTTEALVLKDFCGLDTALERL 353
                  A+  +  +       +         L  L
Sbjct: 681 TATACAGALAIITSVSVKCCEKILAIASWLDILHTL 716

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Length = 584

 Score = 44.2 bits (103), Expect = 6e-05
 Identities = 21/153 (13%), Positives = 43/153 (28%), Gaps = 6/153 (3%)

Query: 137 NSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKA 196
                L   +R     L  +          +   L  ++  L      ++  +A  L   
Sbjct: 16  YYWAPLAQHERGSLASLDSLRKGGPPPPNWRQPELPEVIAMLGFRLDAVKSNAAAYLQHL 75

Query: 197 SQNNPLVQKQVLELGALSKLMKMVKSSFV---EEAVKALYTVSSLIRNNLAGQEMFYVEA 253
              N  V+  V +L  +  L+ ++          A  AL  +S     +   +       
Sbjct: 76  CYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNIS--FGRDQDNKIAIKNCD 133

Query: 254 GDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQ 286
           G   L  +L  +     L       + +L+   
Sbjct: 134 GVPALVRLLRKARDM-DLTEVITGTLWNLSSHD 165

>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A Length = 651

 Score = 40.5 bits (94), Expect = 8e-04
 Identities = 24/126 (19%), Positives = 46/126 (36%), Gaps = 4/126 (3%)

Query: 147 RALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQ 206
           + L  LL  + P      L    G+S L+  L      IR     +L   +++N  +QK 
Sbjct: 144 KLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLADSREVIRNDGVLLLQALTRSNGAIQKI 203

Query: 207 VLELGALSKLMKMVKSSFVEE----AVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDIL 262
           V    A  +L+ ++      +        L  + +L++NN + Q  F   +    ++   
Sbjct: 204 VAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLKNNNSNQNFFKEGSYIQRMKPWF 263

Query: 263 GNSSFE 268
                 
Sbjct: 264 EVGDEN 269

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	397
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	100.0
4hxt_A	252	De novo protein OR329; structural genomics, PSI-bi	99.9
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	99.89
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	99.89
3tt9_A	233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	99.89
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	99.87
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	99.86
4hxt_A	252	De novo protein OR329; structural genomics, PSI-bi	99.86
3ul1_B	510	Importin subunit alpha-2; arm repeat, armadillo re	99.86
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	99.86
3nmz_A	458	APC variant protein; protein-protein complex, arma	99.84
3tpo_A	529	Importin subunit alpha-2; nuclear import, protein	99.84
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	99.83
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	99.83
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	99.82
3tpo_A	529	Importin subunit alpha-2; nuclear import, protein	99.82
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	99.82
4b8j_A	528	Importin subunit alpha-1A; transport protein, nucl	99.81
4b8j_A	528	Importin subunit alpha-1A; transport protein, nucl	99.81
3ul1_B	510	Importin subunit alpha-2; arm repeat, armadillo re	99.81
3tt9_A	233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	99.79
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	99.79
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	99.79
3nmz_A	458	APC variant protein; protein-protein complex, arma	99.79
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	99.78
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	99.77
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	99.77
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	99.76
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	99.75
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	99.74
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	99.74
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	99.71
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	99.69
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	99.68
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	99.66
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	99.62
3opb_A	778	SWI5-dependent HO expression protein 4; heat and a	99.48
3grl_A	651	General vesicular transport factor P115; vesicle t	99.46
3opb_A	778	SWI5-dependent HO expression protein 4; heat and a	99.41
3grl_A	651	General vesicular transport factor P115; vesicle t	99.12
4gmo_A	684	Putative uncharacterized protein; ARM, heat, solen	99.01
3ltj_A	201	Alpharep-4; protein engineering, heat-like repeat,	98.92
3ltm_A	211	Alpha-REP4; protein engineering, heat-like repeat,	98.89
3ltj_A	201	Alpharep-4; protein engineering, heat-like repeat,	98.8
4gmo_A	684	Putative uncharacterized protein; ARM, heat, solen	98.8
3ltm_A	211	Alpha-REP4; protein engineering, heat-like repeat,	98.77
1oyz_A	280	Hypothetical protein YIBA; structural genomics, PS	98.71
1oyz_A	280	Hypothetical protein YIBA; structural genomics, PS	98.63
3dad_A	339	FH1/FH2 domain-containing protein 1; formin, FHOD1	98.51
3b2a_A	265	TON_1937, putative uncharacterized protein; heat-r	98.39
2qk2_A	242	LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2	98.39
4fdd_A	852	Transportin-1; heat repeats, karyopherin, nuclear	98.32
1b3u_A	588	Protein (protein phosphatase PP2A); scaffold prote	98.31
1b3u_A	588	Protein (protein phosphatase PP2A); scaffold prote	98.3
1te4_A	131	Conserved protein MTH187; methanobacterium thermoa	98.3
2vgl_B	591	AP-2 complex subunit beta-1; cytoplasmic vesicle,	98.27
4fdd_A	852	Transportin-1; heat repeats, karyopherin, nuclear	98.19
2vgl_B	591	AP-2 complex subunit beta-1; cytoplasmic vesicle,	98.17
2qk1_A	249	Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h	98.12
3qml_C	315	Protein SLS1, nucleotide exchange factor SIL1; arm	98.11
1ibr_B	462	P95, importin beta-1 subunit, nuclear factor; smal	98.01
1u6g_C	1230	TIP120 protein, CAND1; cullin repeat, heat repeat,	97.98
1ibr_B	462	P95, importin beta-1 subunit, nuclear factor; smal	97.89
1te4_A	131	Conserved protein MTH187; methanobacterium thermoa	97.89
1qgr_A	876	Protein (importin beta subunit); transport recepto	97.86
2bpt_A	861	Importin beta-1 subunit; nuclear transport, nucleo	97.86
1w63_A	618	Adapter-related protein complex 1 gamma 1 subunit;	97.8
2bpt_A	861	Importin beta-1 subunit; nuclear transport, nucleo	97.74
1u6g_C	1230	TIP120 protein, CAND1; cullin repeat, heat repeat,	97.7
1w63_A	618	Adapter-related protein complex 1 gamma 1 subunit;	97.68
2qk2_A	242	LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2	97.66
2vgl_A	621	Adaptor protein complex AP-2, alpha 2 subunit; cyt	97.65
3b2a_A	265	TON_1937, putative uncharacterized protein; heat-r	97.63
1qgr_A	876	Protein (importin beta subunit); transport recepto	97.61
3dad_A	339	FH1/FH2 domain-containing protein 1; formin, FHOD1	97.39
2db0_A	253	253AA long hypothetical protein; heat repeats, hel	97.38
3tjz_B	355	Coatomer subunit gamma; protein trafficking, golgi	97.26
4ffb_C	278	Protein STU2; tubulin fold, heat repeats, cytoskel	97.2
2vgl_A	621	Adaptor protein complex AP-2, alpha 2 subunit; cyt	97.08
2qk1_A	249	Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h	97.06
3eg5_B	383	Protein diaphanous homolog 1; protein-protein comp	96.93
1ho8_A	480	Vacuolar ATP synthase subunit H; heat repeat, hydr	96.78
2fv2_A	268	RCD1 required for cell differentiation1 homolog; a	96.58
2of3_A	266	ZYG-9; multifunctional macromolecule, kinetochore,	96.16
2db0_A	253	253AA long hypothetical protein; heat repeats, hel	95.96
2f31_A	233	Diaphanous protein homolog 1; formin,MDIA1, protei	95.96
3ibv_A	980	Exportin-T; karyopherin, heat repeat, cytoplasm, n	95.45
2bnx_A	386	Diaphanous protein homolog 1; autoinhibition, acti	95.27
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	95.23
3tjz_B	355	Coatomer subunit gamma; protein trafficking, golgi	95.14
2bnx_A	386	Diaphanous protein homolog 1; autoinhibition, acti	94.79
3eg5_B	383	Protein diaphanous homolog 1; protein-protein comp	94.59
2f31_A	233	Diaphanous protein homolog 1; formin,MDIA1, protei	94.56
2x19_B	963	Importin-13; nuclear transport, protein transport;	94.49
4ady_A	963	RPN2, 26S proteasome regulatory subunit RPN2; prot	94.35
2fv2_A	268	RCD1 required for cell differentiation1 homolog; a	94.27
1wa5_C	960	Importin alpha RE-exporter; nuclear transport/comp	94.23
4hat_C	1023	Exportin-1; heat repeat, nuclear export, RAN-ranbp	94.06
4ady_A	963	RPN2, 26S proteasome regulatory subunit RPN2; prot	94.02
1ho8_A	480	Vacuolar ATP synthase subunit H; heat repeat, hydr	93.67
2x1g_F	971	Cadmus; transport protein, developmental protein,	93.54
3u0r_A	507	Apoptosis inhibitor 5; heat repeat, armadillo repe	92.85
3gs3_A	257	Symplekin, LD45768P; helix-turn-helix heat repeat	92.62
2x19_B	963	Importin-13; nuclear transport, protein transport;	92.46
1lsh_A	1056	Lipovitellin (LV-1N, LV-1C); vitellogenin, lipopro	92.3
3o2t_A	386	Symplekin; heat repeat, scaffold, protein binding;	91.6
3ebb_A	304	Phospholipase A2-activating protein; armadillo rep	91.56
1upk_A	341	MO25 protein; transferase, armadillo; HET: MSE; 1.	91.46
1wa5_C	960	Importin alpha RE-exporter; nuclear transport/comp	91.09
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	90.99
2x1g_F	971	Cadmus; transport protein, developmental protein,	90.9
1mhq_A	148	ADP-ribosylation factor binding protein GGA2; supe	90.49
1x5b_A	163	Signal transducing adaptor molecule 2; VHS domain,	90.1
3ldz_A	140	STAM-1, signal transducing adapter molecule 1; ubi	89.8
1juq_A	171	ADP-ribosylation factor binding protein GGA3; prot	89.56
3m1i_C	1049	Exportin-1; heat repeat, GTP-binding, nucleotide-b	89.22
4ffb_C	278	Protein STU2; tubulin fold, heat repeats, cytoskel	87.79
4hat_C	1023	Exportin-1; heat repeat, nuclear export, RAN-ranbp	87.49
1lrv_A	244	LRV, leucine-rich repeat variant; leucine-rich rep	87.48
3m1i_C	1049	Exportin-1; heat repeat, GTP-binding, nucleotide-b	87.16
3c2g_A	619	SYS-1 protein; beta-catenin, phylogeny, SYS-1, dev	87.07
3gjx_A	1073	Exportin-1; transport, cytoplasm, nucleus, RNA-bin	86.76
3qml_C	315	Protein SLS1, nucleotide exchange factor SIL1; arm	86.39
3zyq_A	226	Hepatocyte growth factor-regulated tyrosine kinas	85.64
3g2s_A	149	C-terminal fragment of sortilin-related receptor;	85.54
1elk_A	157	Target of MYB1; superhelix of helices, endocytosis	85.53
1lrv_A	244	LRV, leucine-rich repeat variant; leucine-rich rep	85.51
1dvp_A	220	HRS, hepatocyte growth factor-regulated tyrosine k	84.1
2of3_A	266	ZYG-9; multifunctional macromolecule, kinetochore,	83.81
3ebb_A	304	Phospholipase A2-activating protein; armadillo rep	83.19

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*

Probab=100.00  E-value=5.7e-39  Score=313.40  Aligned_cols=253  Identities=24%  Similarity=0.292  Sum_probs=213.7

Q ss_pred             HHHHHHHHHhcCCCCHHHHHHHHHHHhhCC----------CCCHHHHHHHHHHHHhccCCCCchhHHHhcCCHHHHHH-h
Q 015951          109 QMEIKELMEKLKTPSDAQLIQIAIDDLNNS----------TLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVG-Q  177 (397)
Q Consensus       109 ~~~L~ea~~~~~~~~d~~lmk~~i~~L~~~----------~~s~e~k~~AL~~L~~Lve~iDnA~~~~~lGGl~~Li~-l  177 (397)
                      ..||.++|+  ++|||+++||+++.+|.++          +.+.+.|+.|++.|.++++++|||++|++.||+|+|+. +
T Consensus        13 ~~~~~~~~~--~~~d~~~~mk~~l~vl~~~~~~~~~~~~~~~~~e~k~~Al~~L~~lv~~~dna~~~~~~G~l~~Lv~~l   90 (296)
T 1xqr_A           13 LVPRGSHMR--GQRGEVEQMKSCLRVLSQPMPPTAGEAEQAADQQEREGALELLADLCENMDNAADFCQLSGMHLLVGRY   90 (296)
T ss_dssp             -------CC--SCHHHHHHHHHHHHHHHSCCCSSCCHHHHHHHHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHTT
T ss_pred             hHHHHHHHc--CCCCHHHHHHHHHHHHhCCCcccccccccCCCHHHHHHHHHHHHHHHhChhhHHHHHHcCCHHHHHHHH
Confidence            568898886  5699999999999999997          45668999999999999999999999999999999999 9


Q ss_pred             cCCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCcHHHHHHhhcCC-CHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHH
Q 015951          178 LNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSS-FVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDL  256 (397)
Q Consensus       178 L~s~~~~ir~~Aa~vLg~~aqNNp~~Q~~vl~~g~lp~Ll~LL~s~-~~~v~~kAl~ALS~LiR~~~~~~~~f~~~gGi~  256 (397)
                      |+++++++|..|+|+||++++|||.+|+.+++.|++|+|+++|+++ +..++++|+||||+++|+++++++.|+++||++
T Consensus        91 L~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~LL~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~  170 (296)
T 1xqr_A           91 LEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFS  170 (296)
T ss_dssp             TTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHH
T ss_pred             HcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHH
Confidence            9999999999999999999999999999999999999999999964 688999999999999999999999999999999


Q ss_pred             HHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHHhCCcHHHHHHhccCCChHHHHHHHHHHHHHhcCChHH
Q 015951          257 MLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLRTTE  336 (397)
Q Consensus       257 ~L~~lL~s~~~d~klr~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~dv~E~aL~aL~~L~~~~~~~  336 (397)
                      .|+.+|+++  +.++|.+|+|+|++|+..     +++.+..+++.|+++.|+.+|.+++++++++|+.+|.+|+...+..
T Consensus       171 ~L~~lL~~~--d~~v~~~A~~aLs~L~~~-----~~~~~~~vv~~g~i~~Lv~LL~~~d~~v~~~al~aL~~l~~~~~~~  243 (296)
T 1xqr_A          171 VLMRAMQQQ--VQKLKVKSAFLLQNLLVG-----HPEHKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTDFPQG  243 (296)
T ss_dssp             HHHHHHHSS--CHHHHHHHHHHHHHHHHH-----CGGGHHHHHHTTHHHHHHHHHTSCCSTHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHcCC--CHHHHHHHHHHHHHHHhC-----ChHHHHHHHHcCCHHHHHHHHcCCChhHHHHHHHHHHHHHhCChhH
Confidence            999999986  778999999999999963     6778899999999999999999999999999999999999885533


Q ss_pred             HHHHHhcCCh-HHHHHHHHHHhHHhhh---hhhhhhhHHhH
Q 015951          337 ALVLKDFCGL-DTALERLRQQLQEVML---EEDQRDYAMDV  373 (397)
Q Consensus       337 r~~~~~~~gL-~~~L~~Lr~~~~~l~~---~e~~~~~~~~l  373 (397)
                      ...++   .. ..+...|+..++.+..   .++..+||..+
T Consensus       244 ~~~~~---~~~~~l~~lL~~~~~~lq~~e~~~e~~~~~~~i  281 (296)
T 1xqr_A          244 VRECR---EPELGLEELLRHRCQLLQQHEEYQEELEFCEKL  281 (296)
T ss_dssp             HHHHH---CGGGCHHHHHHHHHHHHTTCGGGHHHHHHHHHH
T ss_pred             HHHHh---ccHHHHHHHHHHHHHHccchHHHHHHHHHHHHH
Confidence            33332   22 2234445555555441   24455566555

>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}

Probab=99.90  E-value=2.3e-22  Score=185.26  Aligned_cols=217  Identities=18%  Similarity=0.227  Sum_probs=194.5

Q ss_pred             HHHHHHHhhCCCCCHHHHHHHHHHHHhccCCCC-chhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHHHHH
Q 015951          128 IQIAIDDLNNSTLSLEDSQRALQELLILVEPID-NANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQ  206 (397)
Q Consensus       128 mk~~i~~L~~~~~s~e~k~~AL~~L~~Lve~iD-nA~~~~~lGGl~~Li~lL~s~~~~ir~~Aa~vLg~~aqNNp~~Q~~  206 (397)
                      +..+++.+.+++  ++.+..|+..|..++...+ +...+.+.|+++.|+++|+++++++|..|+++|++++.+++..+..
T Consensus         4 i~~L~~~L~~~~--~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~   81 (252)
T 4hxt_A            4 VEKLVKLLTSTD--SETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKA   81 (252)
T ss_dssp             HHHHHHHTTCSC--HHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred             HHHHHHHHcCCC--HHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHH
Confidence            566778887764  7889999999999987664 8889999999999999999999999999999999999999999999


Q ss_pred             HHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhch
Q 015951          207 VLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQ  286 (397)
Q Consensus       207 vl~~g~lp~Ll~LL~s~~~~v~~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klr~kA~~lL~~L~~~~  286 (397)
                      +.+.|++|.|+.++.++++.++..|+++|++++.+++.....+.+.|+++.|+.++.++  +..++..++++|++|+.  
T Consensus        82 ~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~--~~~~~~~a~~~L~~l~~--  157 (252)
T 4hxt_A           82 IVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTST--DSEVQKEAARALANIAS--  157 (252)
T ss_dssp             HHHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCS--CHHHHHHHHHHHHHHTT--
T ss_pred             HHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCC--CHHHHHHHHHHHHHHHc--
Confidence            99999999999999999999999999999999999999999999999999999999986  56799999999999985  


Q ss_pred             hccCCCCcchhHHhCCcHHHHHHhccCCChHHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHH
Q 015951          287 LENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLRTTEALVLKDFCGLDTALERL  353 (397)
Q Consensus       287 l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~dv~E~aL~aL~~L~~~~~~~r~~~~~~~gL~~~L~~L  353 (397)
                         .++.....+.+.|+++.|+.+|.++++.+++.|+.+|.+|+...+..++.+.+.+++..++..+
T Consensus       158 ---~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll  221 (252)
T 4hxt_A          158 ---GPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQKLL  221 (252)
T ss_dssp             ---SCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBHHHHHHHHHTTHHHHHHHGG
T ss_pred             ---CCHHHHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHH
Confidence               2455567888999999999999999999999999999999987777777777666666666644

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A

Probab=99.89  E-value=4.6e-22  Score=180.14  Aligned_cols=193  Identities=18%  Similarity=0.256  Sum_probs=175.3

Q ss_pred             HHHHHhhCCCCCHHHHHHHHHHHHhcc-CCCCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHHHHHHH
Q 015951          130 IAIDDLNNSTLSLEDSQRALQELLILV-EPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVL  208 (397)
Q Consensus       130 ~~i~~L~~~~~s~e~k~~AL~~L~~Lv-e~iDnA~~~~~lGGl~~Li~lL~s~~~~ir~~Aa~vLg~~aqNNp~~Q~~vl  208 (397)
                      .+...+.++  +++.+..|+..|.++. .+.++...+.+.|+++.|+++|+++++++|..|+++|++++.+++..+..++
T Consensus        16 ~l~~LL~s~--~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~   93 (210)
T 4db6_A           16 QMVQQLNSP--DQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVI   93 (210)
T ss_dssp             HHHHHTTCS--CHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred             HHHHHhcCC--CHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHH
Confidence            344555443  5788899999999998 5567788899999999999999999999999999999999999999999999


Q ss_pred             HcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhc
Q 015951          209 ELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLE  288 (397)
Q Consensus       209 ~~g~lp~Ll~LL~s~~~~v~~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klr~kA~~lL~~L~~~~l~  288 (397)
                      +.|++|.|+.+|++++..++..|+++|++++.+++.....+++.|+++.|+.++.++  +..++..|+++|.+|+.    
T Consensus        94 ~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~--~~~v~~~a~~aL~~l~~----  167 (210)
T 4db6_A           94 DAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSP--NEQILQEALWALSNIAS----  167 (210)
T ss_dssp             HTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCS--CHHHHHHHHHHHHHHHT----
T ss_pred             HCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCC--CHHHHHHHHHHHHHHHc----
Confidence            999999999999999999999999999999999999888999999999999999986  66899999999999996    


Q ss_pred             cCCCCcchhHHhCCcHHHHHHhccCCChHHHHHHHHHHHHHhc
Q 015951          289 NMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQ  331 (397)
Q Consensus       289 ~~~~~~~~~l~~~g~v~~Lv~lL~~~d~dv~E~aL~aL~~L~~  331 (397)
                       .++..+..+.+.|+++.|+.++.++++++++.|+.+|.+|+.
T Consensus       168 -~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~  209 (210)
T 4db6_A          168 -GGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS  209 (210)
T ss_dssp             -SCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHCC
T ss_pred             -CCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHhc
Confidence             246677888999999999999999999999999999999975

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}

Probab=99.89  E-value=5.7e-22  Score=184.15  Aligned_cols=213  Identities=17%  Similarity=0.232  Sum_probs=183.3

Q ss_pred             HHhhCCCCCHHHHHHHHHHHHhcc-CCCCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcC
Q 015951          133 DDLNNSTLSLEDSQRALQELLILV-EPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELG  211 (397)
Q Consensus       133 ~~L~~~~~s~e~k~~AL~~L~~Lv-e~iDnA~~~~~lGGl~~Li~lL~s~~~~ir~~Aa~vLg~~aqNNp~~Q~~vl~~g  211 (397)
                      ..|.++  +++.+..|+..|..++ .+.++...+.+.|+++.|+.+|+++++++|..|+++|++++.+++..+..+.+.|
T Consensus        19 ~~L~s~--~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g   96 (252)
T 4db8_A           19 QQLNSD--DMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAG   96 (252)
T ss_dssp             HHHHSS--CSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTT
T ss_pred             HHHcCC--CHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcC
Confidence            344444  3457778888885544 3455667899999999999999999999999999999999999999999999999


Q ss_pred             cHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCC
Q 015951          212 ALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMH  291 (397)
Q Consensus       212 ~lp~Ll~LL~s~~~~v~~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klr~kA~~lL~~L~~~~l~~~~  291 (397)
                      ++|.|+++++++++.++..|+++|+++..+.+.....+.+.||++.|+.+|.++  +..++..|+++|++|+.     .+
T Consensus        97 ~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~--~~~v~~~a~~~L~~l~~-----~~  169 (252)
T 4db8_A           97 ALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSP--NEQILQEALWALSNIAS-----GG  169 (252)
T ss_dssp             HHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCS--CHHHHHHHHHHHHHHTT-----SC
T ss_pred             CHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCC--CHHHHHHHHHHHHHHHc-----CC
Confidence            999999999999999999999999999988777668899999999999999986  66799999999999995     24


Q ss_pred             CCcchhHHhCCcHHHHHHhccCCChHHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHHH
Q 015951          292 KVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLRTTEALVLKDFCGLDTALERLR  354 (397)
Q Consensus       292 ~~~~~~l~~~g~v~~Lv~lL~~~d~dv~E~aL~aL~~L~~~~~~~r~~~~~~~gL~~~L~~Lr  354 (397)
                      +.....+.+.|+++.|+.+|.++++.+++.|+.+|.+|+..++..+..+.+.++++.++..++
T Consensus       170 ~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~  232 (252)
T 4db8_A          170 NEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQS  232 (252)
T ss_dssp             HHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHTTTT
T ss_pred             hHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhC
Confidence            566677889999999999999999999999999999999877777777776666666666543

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}

Probab=99.89  E-value=7.8e-22  Score=186.06  Aligned_cols=198  Identities=14%  Similarity=0.153  Sum_probs=173.1

Q ss_pred             CHHHHHHhcCCCCH--HHHHHHHHHHHHHhcCChHHHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHH
Q 015951          170 GLSVLVGQLNHPDT--DIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQE  247 (397)
Q Consensus       170 Gl~~Li~lL~s~~~--~ir~~Aa~vLg~~aqNNp~~Q~~vl~~g~lp~Ll~LL~s~~~~v~~kAl~ALS~LiR~~~~~~~  247 (397)
                      .+|+++++|.++++  +++..|+++|.+++.+|+..+..+.+.|+||+|+++|++++++++..|+|||.+|..+++.+..
T Consensus         9 ~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~nk~   88 (233)
T 3tt9_A            9 TLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDNKL   88 (233)
T ss_dssp             CHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             cHHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHH
Confidence            58999999999888  9999999999999999999999999999999999999999999999999999999998999999


Q ss_pred             HHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHHhCCcHHHHHHhcc---------------
Q 015951          248 MFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTA---------------  312 (397)
Q Consensus       248 ~f~~~gGi~~L~~lL~s~~~d~klr~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~---------------  312 (397)
                      .+.++||++.|+++|.+. .+..++..|+.+|++|+.      .+..+..+.+. .++.|++++.               
T Consensus        89 ~I~~~GaI~~Lv~lL~~~-~~~~~~e~a~~aL~nLS~------~~~~k~~i~~~-~i~~Lv~ll~~p~sG~~~~~~~~~~  160 (233)
T 3tt9_A           89 EVAELNGVPRLLQVLKQT-RDLETKKQITGLLWNLSS------NDKLKNLMITE-ALLTLTENIIIPFSGWPEGDYPKAN  160 (233)
T ss_dssp             HHHHTTHHHHHHHHHHHC-CCHHHHHHHHHHHHHHHT------SGGGHHHHHHH-HHHHHCCCCCHHHHCCCGGGCCCCC
T ss_pred             HHHHcCCHHHHHHHHccC-CCHHHHHHHHHHHHHHHc------ChhhHHHHHhc-cHHHHHHHHhccccCCccccccccc
Confidence            999999999999999842 156799999999999985      45667777765 5888888652               


Q ss_pred             -CCChHHHHHHHHHHHHHhcCChHHHHHHHhcCCh-HHHHHHHHHHhHHhhhhhhhhhhHHhHHHHH
Q 015951          313 -SADLDLQEKALAAIKNLLQLRTTEALVLKDFCGL-DTALERLRQQLQEVMLEEDQRDYAMDVEALR  377 (397)
Q Consensus       313 -~~d~dv~E~aL~aL~~L~~~~~~~r~~~~~~~gL-~~~L~~Lr~~~~~l~~~e~~~~~~~~l~~~~  377 (397)
                       ..+++++++|..+|++|++..++.|+.+++++|+ ++++..+|....+...+++..|+|  +.+||
T Consensus       161 ~~~~~~v~~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~--v~~L~  225 (233)
T 3tt9_A          161 GLLDFDIFYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENC--VCILH  225 (233)
T ss_dssp             TTCCHHHHHHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHH--HHHHH
T ss_pred             ccchHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHH--HHHHH
Confidence             1377999999999999999877799999988786 899999998777666678888988  55565

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A

Probab=99.87  E-value=3.9e-21  Score=173.97  Aligned_cols=181  Identities=18%  Similarity=0.180  Sum_probs=161.9

Q ss_pred             HhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhc
Q 015951          166 SKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAG  245 (397)
Q Consensus       166 ~~lGGl~~Li~lL~s~~~~ir~~Aa~vLg~~aqNNp~~Q~~vl~~g~lp~Ll~LL~s~~~~v~~kAl~ALS~LiR~~~~~  245 (397)
                      ..-|+.++|+.+|+++++++|..|+++|++++.+++..+..+++.|++|.|+++|.++++.++..|+++|++++.+++..
T Consensus         9 ~~~~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~   88 (210)
T 4db6_A            9 HHGSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQ   88 (210)
T ss_dssp             ----CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHH
T ss_pred             cccchhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHH
Confidence            34588999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHHhCCcHHHHHHhccCCChHHHHHHHHH
Q 015951          246 QEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAA  325 (397)
Q Consensus       246 ~~~f~~~gGi~~L~~lL~s~~~d~klr~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~dv~E~aL~a  325 (397)
                      ...+++.||++.|+.+|.++  +..++..|+++|++|+.     .++.....+.+.|+++.|+.+|.++++.+++.|+.+
T Consensus        89 ~~~i~~~g~i~~L~~lL~~~--~~~v~~~a~~~L~~l~~-----~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~a  161 (210)
T 4db6_A           89 IQAVIDAGALPALVQLLSSP--NEQILQEALWALSNIAS-----GGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWA  161 (210)
T ss_dssp             HHHHHHTTCHHHHHHHTTCS--CHHHHHHHHHHHHHHTT-----SCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHcCC--cHHHHHHHHHHHHHHHc-----CCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHH
Confidence            99999999999999999987  67799999999999995     245566778899999999999999999999999999


Q ss_pred             HHHHhcCChHHHHHHHhcCChHHHHHHH
Q 015951          326 IKNLLQLRTTEALVLKDFCGLDTALERL  353 (397)
Q Consensus       326 L~~L~~~~~~~r~~~~~~~gL~~~L~~L  353 (397)
                      |.+|+..++..+..+.+.++++.++..+
T Consensus       162 L~~l~~~~~~~~~~~~~~g~i~~L~~ll  189 (210)
T 4db6_A          162 LSNIASGGNEQKQAVKEAGALEKLEQLQ  189 (210)
T ss_dssp             HHHHHTSCHHHHHHHHHTTHHHHHHHGG
T ss_pred             HHHHHcCCcHHHHHHHHCCCHHHHHHHH
Confidence            9999998777777787666666666644

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}

Probab=99.86  E-value=1e-20  Score=175.68  Aligned_cols=196  Identities=17%  Similarity=0.222  Sum_probs=177.7

Q ss_pred             HHHHHHHHhhCCCCCHHHHHHHHHHHHhccC-CCCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHHHH
Q 015951          127 LIQIAIDDLNNSTLSLEDSQRALQELLILVE-PIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQK  205 (397)
Q Consensus       127 lmk~~i~~L~~~~~s~e~k~~AL~~L~~Lve-~iDnA~~~~~lGGl~~Li~lL~s~~~~ir~~Aa~vLg~~aqNNp~~Q~  205 (397)
                      .+..+++.+.+++  ++.+..|+..|.+++. +.++...+.+.|+++.|+.+|+++++.+|..|+++|++++.+++..+.
T Consensus        55 ~i~~L~~lL~~~~--~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~  132 (252)
T 4db8_A           55 ALPALVQLLSSPN--EQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQ  132 (252)
T ss_dssp             HHHHHHHGGGCSC--HHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred             cHHHHHHHHcCCC--HHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHH
Confidence            4567788887764  7889999999999997 567888999999999999999999999999999999999998887669


Q ss_pred             HHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhc
Q 015951          206 QVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKC  285 (397)
Q Consensus       206 ~vl~~g~lp~Ll~LL~s~~~~v~~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klr~kA~~lL~~L~~~  285 (397)
                      .+.+.|++|.|++++.+++..++..|+++|++++.+++.....+.+.|+++.|+.++.++  +..++..|+++|++|+. 
T Consensus       133 ~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~--~~~v~~~a~~~L~~l~~-  209 (252)
T 4db8_A          133 AVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSP--NEQILQEALWALSNIAS-  209 (252)
T ss_dssp             HHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHGGGCS--SHHHHHHHHHHHHHHTT-
T ss_pred             HHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHCCC--CHHHHHHHHHHHHHHhc-
Confidence            999999999999999999999999999999999999988889999999999999999986  67799999999999985 


Q ss_pred             hhccCCCCcchhHHhCCcHHHHHHhccCCChHHHHHHHHHHHHHhc
Q 015951          286 QLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQ  331 (397)
Q Consensus       286 ~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~dv~E~aL~aL~~L~~  331 (397)
                          .++..+..+.+.|+++.++.++.++++++++.|+.+|.+|+.
T Consensus       210 ----~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~A~~~L~~l~~  251 (252)
T 4db8_A          210 ----GGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS  251 (252)
T ss_dssp             ----SCHHHHHHHHHTTHHHHHHTTTTCSSSHHHHTHHHHHHTTC-
T ss_pred             ----CCHHHHHHHHHCCcHHHHHHHhCCCCHHHHHHHHHHHHHHhc
Confidence                355677788999999999999999999999999999999874

>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}

Probab=99.86  E-value=2.6e-20  Score=171.46  Aligned_cols=199  Identities=17%  Similarity=0.207  Sum_probs=181.7

Q ss_pred             HHHHHHHHhhCCCCCHHHHHHHHHHHHhccCC-CCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHHHH
Q 015951          127 LIQIAIDDLNNSTLSLEDSQRALQELLILVEP-IDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQK  205 (397)
Q Consensus       127 lmk~~i~~L~~~~~s~e~k~~AL~~L~~Lve~-iDnA~~~~~lGGl~~Li~lL~s~~~~ir~~Aa~vLg~~aqNNp~~Q~  205 (397)
                      .+..+++.+.++  +.+.+..|+..|..+... .++...+.+.|+++.|+.+|+++++++|..|+++|++++..++..+.
T Consensus        45 ~i~~L~~ll~~~--~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~  122 (252)
T 4hxt_A           45 GVEVLVKLLTST--DSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIK  122 (252)
T ss_dssp             HHHHHHHHTTCS--CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred             CHHHHHHHHhCC--CHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHH
Confidence            466677778765  478899999999999987 67888899999999999999999999999999999999999999999


Q ss_pred             HHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhc
Q 015951          206 QVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKC  285 (397)
Q Consensus       206 ~vl~~g~lp~Ll~LL~s~~~~v~~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klr~kA~~lL~~L~~~  285 (397)
                      .+.+.|++|.|++++.++++.++..|+++|++++.+++.....+.+.|+++.|+.++.++  +..++..|+++|.+|+. 
T Consensus       123 ~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~--~~~v~~~a~~~L~~l~~-  199 (252)
T 4hxt_A          123 AIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTST--DSEVQKEAARALANIAS-  199 (252)
T ss_dssp             HHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCS--CHHHHHHHHHHHHHHTT-
T ss_pred             HHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCcCHHHHHHHHCCC--CHHHHHHHHHHHHHHHc-
Confidence            999999999999999999999999999999999999888888999999999999999976  56799999999999995 


Q ss_pred             hhccCCCCcchhHHhCCcHHHHHHhccCCChHHHHHHHHHHHHHhcCCh
Q 015951          286 QLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLRT  334 (397)
Q Consensus       286 ~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~dv~E~aL~aL~~L~~~~~  334 (397)
                          .++.....+.+.|+++.++.++.++++++++.|+.+|.+|....+
T Consensus       200 ----~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~  244 (252)
T 4hxt_A          200 ----GPTSAIKAIVDAGGVEVLQKLLTSTDSEVQKEAQRALENIKSGGW  244 (252)
T ss_dssp             ----SBHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHTCB
T ss_pred             ----CCHHHHHHHHHCCCHHHHHHHHCCCcHHHHHHHHHHHHHHHcCCC
Confidence                255677788999999999999999999999999999999998754

>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...

Probab=99.86  E-value=9.2e-20  Score=188.87  Aligned_cols=221  Identities=16%  Similarity=0.193  Sum_probs=187.8

Q ss_pred             HHHHHHHhhCCCCCHHHHHHHHHHHHhccCCCCc--hhHHHhcCCHHHHHHhcC-CCCHHHHHHHHHHHHHHhcCChHHH
Q 015951          128 IQIAIDDLNNSTLSLEDSQRALQELLILVEPIDN--ANDLSKLGGLSVLVGQLN-HPDTDIRKISAWILGKASQNNPLVQ  204 (397)
Q Consensus       128 mk~~i~~L~~~~~s~e~k~~AL~~L~~Lve~iDn--A~~~~~lGGl~~Li~lL~-s~~~~ir~~Aa~vLg~~aqNNp~~Q  204 (397)
                      +.++++.+.+.  +++.+..|...+..++..-+|  -+.+++.|++|+|+++|+ ++++++|..|+|+|+++|..++..+
T Consensus        59 i~~~v~~l~s~--d~~~q~~a~~~~rklls~e~~ppi~~ii~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~~  136 (510)
T 3ul1_B           59 VEDIVKGINSN--NLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQT  136 (510)
T ss_dssp             HHHHHHHHTSS--CHHHHHHHHHHHHHHHTCSSCCCHHHHHHTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHHH
T ss_pred             HHHHHHHhcCC--CHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHH
Confidence            56677777655  578889999999988755444  478999999999999996 4669999999999999999999999


Q ss_pred             HHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCc---cHHHHHHHHHHHHH
Q 015951          205 KQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSF---EIRLHRKAVSLVGD  281 (397)
Q Consensus       205 ~~vl~~g~lp~Ll~LL~s~~~~v~~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~---d~klr~kA~~lL~~  281 (397)
                      ..+++.|++|.|+++|.+++..++..|+|||++|+.+++..+..+.+.||++.|+.++.++..   ...+++.++|++++
T Consensus       137 ~~vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~n  216 (510)
T 3ul1_B          137 KAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSN  216 (510)
T ss_dssp             HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHH
T ss_pred             HHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999999986532   24578899999999


Q ss_pred             HhhchhccCCCCcchhHHhCCcHHHHHHhccCCChHHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHHHH
Q 015951          282 LAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLRTTEALVLKDFCGLDTALERLRQ  355 (397)
Q Consensus       282 L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~dv~E~aL~aL~~L~~~~~~~r~~~~~~~gL~~~L~~Lr~  355 (397)
                      ++.+     ...........|+++.|+.+|.+++.+++..|+.+|.+|+.......+.+...+++..++..|++
T Consensus       217 l~~~-----~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~  285 (510)
T 3ul1_B          217 LCRN-----KNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGA  285 (510)
T ss_dssp             HHCC-----CSSCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTC
T ss_pred             Hhhc-----ccchhHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHHHHHhhchhhhHHHHHhcccchhhhhhhcC
Confidence            9963     22333344456899999999999999999999999999999887666667766777777776654

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A

Probab=99.86  E-value=1.5e-20  Score=187.43  Aligned_cols=213  Identities=16%  Similarity=0.163  Sum_probs=180.6

Q ss_pred             CHHHHHHHHHHHHhccCCCC-chhHHHhcCC-HHHHHHhcCCCCHHHHHHHHHHHHHHhcC-ChHHHHHHHHcCcHHHHH
Q 015951          141 SLEDSQRALQELLILVEPID-NANDLSKLGG-LSVLVGQLNHPDTDIRKISAWILGKASQN-NPLVQKQVLELGALSKLM  217 (397)
Q Consensus       141 s~e~k~~AL~~L~~Lve~iD-nA~~~~~lGG-l~~Li~lL~s~~~~ir~~Aa~vLg~~aqN-Np~~Q~~vl~~g~lp~Ll  217 (397)
                      +++-+..|...|.+++..-+ +...+...|| +|+|+.+|.++++++|..|+|+|++++.+ |+..+..+.+.|++|.|+
T Consensus        97 ~~~~q~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv  176 (354)
T 3nmw_A           97 SITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALM  176 (354)
T ss_dssp             HHHHHHHHHHHHHHHTSSCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHH
Confidence            35678889999999987655 5555667777 99999999999999999999999999986 788999999999999999


Q ss_pred             Hhh-cCCCHHHHHHHHHHHHHHhcCChhcHHHHH-hcCcHHHHHHhhcCCCcc--HHHHHHHHHHHHHHhhchhccCCCC
Q 015951          218 KMV-KSSFVEEAVKALYTVSSLIRNNLAGQEMFY-VEAGDLMLQDILGNSSFE--IRLHRKAVSLVGDLAKCQLENMHKV  293 (397)
Q Consensus       218 ~LL-~s~~~~v~~kAl~ALS~LiR~~~~~~~~f~-~~gGi~~L~~lL~s~~~d--~klr~kA~~lL~~L~~~~l~~~~~~  293 (397)
                      ++| ++.+.+++..|+.||.++..+++.++..+. ..||++.|+.+|.+++..  ..++..|+++|++|+...  ..+++
T Consensus       177 ~lL~~~~~~~~~~~A~~aL~nLs~~~~~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~--a~~~~  254 (354)
T 3nmw_A          177 ECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLI--ATNED  254 (354)
T ss_dssp             HHHHHCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHH--TTCHH
T ss_pred             HHHhcCCCHHHHHHHHHHHHHHHccChhhhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhc--cCCHH
Confidence            974 666788999999999999987777788887 789999999999876322  258999999999998410  02556


Q ss_pred             cchhHHhCCcHHHHHHhccCCChHHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHHHH
Q 015951          294 EPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLRTTEALVLKDFCGLDTALERLRQ  355 (397)
Q Consensus       294 ~~~~l~~~g~v~~Lv~lL~~~d~dv~E~aL~aL~~L~~~~~~~r~~~~~~~gL~~~L~~Lr~  355 (397)
                      .+..+.+.|.++.|+.+|.+++..+++.|+.+|.+|+..++..++.+.+.|++++++..|++
T Consensus       255 ~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~i~~Lv~LL~s  316 (354)
T 3nmw_A          255 HRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHS  316 (354)
T ss_dssp             HHHHHHTTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTHHHHHHTTTTC
T ss_pred             HHHHHHHcCCHHHHHHHHcCCChHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHhC
Confidence            78889999999999999999999999999999999997667788888878888888876644

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}

Probab=99.84  E-value=7.3e-20  Score=188.33  Aligned_cols=212  Identities=16%  Similarity=0.160  Sum_probs=179.1

Q ss_pred             HHHHHHHHHHHHhccCCCC-chhHHHhcCC-HHHHHHhcCCCCHHHHHHHHHHHHHHhcC-ChHHHHHHHHcCcHHHHHH
Q 015951          142 LEDSQRALQELLILVEPID-NANDLSKLGG-LSVLVGQLNHPDTDIRKISAWILGKASQN-NPLVQKQVLELGALSKLMK  218 (397)
Q Consensus       142 ~e~k~~AL~~L~~Lve~iD-nA~~~~~lGG-l~~Li~lL~s~~~~ir~~Aa~vLg~~aqN-Np~~Q~~vl~~g~lp~Ll~  218 (397)
                      ++-+..|...|.+++..-+ +...+...|| +|+|+.+|.+++++++..|+|+|++++.+ ++..+..+.+.|++|.|++
T Consensus       214 ~~l~~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~  293 (458)
T 3nmz_A          214 ITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALME  293 (458)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCCCcccHHHHHHcCCcHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHH
Confidence            4567889999999887665 4445556777 99999999999999999999999999985 7889999999999999999


Q ss_pred             hh-cCCCHHHHHHHHHHHHHHhcCChhcHHHHH-hcCcHHHHHHhhcCCCcc--HHHHHHHHHHHHHHhhchhccCCCCc
Q 015951          219 MV-KSSFVEEAVKALYTVSSLIRNNLAGQEMFY-VEAGDLMLQDILGNSSFE--IRLHRKAVSLVGDLAKCQLENMHKVE  294 (397)
Q Consensus       219 LL-~s~~~~v~~kAl~ALS~LiR~~~~~~~~f~-~~gGi~~L~~lL~s~~~d--~klr~kA~~lL~~L~~~~l~~~~~~~  294 (397)
                      +| .+++..++..|+.||.+|..+++.++..+. ..||++.|+.+|.+++..  ..++..|+++|++|+...  ..+++.
T Consensus       294 lLl~s~~~~v~~~A~~aL~nLs~~~~~nk~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~--a~~~~~  371 (458)
T 3nmz_A          294 CALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLI--ATNEDH  371 (458)
T ss_dssp             HHTTCCSHHHHHHHHHHHHHHHHHCHHHHHHHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHH--TTCHHH
T ss_pred             HHhcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcc--cCCHHH
Confidence            75 556788899999999999887777788887 789999999999976322  248999999999998410  025667


Q ss_pred             chhHHhCCcHHHHHHhccCCChHHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHHHH
Q 015951          295 PPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLRTTEALVLKDFCGLDTALERLRQ  355 (397)
Q Consensus       295 ~~~l~~~g~v~~Lv~lL~~~d~dv~E~aL~aL~~L~~~~~~~r~~~~~~~gL~~~L~~Lr~  355 (397)
                      +..+.+.|.++.|+.+|++++.++++.|+.+|.+|+...+..+..+.+.|+++++++.|++
T Consensus       372 ~~~i~~~G~i~~Lv~LL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~I~~Lv~LL~s  432 (458)
T 3nmz_A          372 RQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHS  432 (458)
T ss_dssp             HHHHHHTTHHHHHHHHSSCSCHHHHHHHHHHHHHHHSSCHHHHHHHHHHTHHHHHHTTTTC
T ss_pred             HHHHHHcccHHHHHHHHcCCChHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhC
Confidence            8889999999999999999999999999999999997667788888878888888886643

>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B

Probab=99.84  E-value=5.9e-19  Score=183.29  Aligned_cols=221  Identities=16%  Similarity=0.187  Sum_probs=186.8

Q ss_pred             HHHHHHHhhCCCCCHHHHHHHHHHHHhccCCCC--chhHHHhcCCHHHHHHhcC-CCCHHHHHHHHHHHHHHhcCChHHH
Q 015951          128 IQIAIDDLNNSTLSLEDSQRALQELLILVEPID--NANDLSKLGGLSVLVGQLN-HPDTDIRKISAWILGKASQNNPLVQ  204 (397)
Q Consensus       128 mk~~i~~L~~~~~s~e~k~~AL~~L~~Lve~iD--nA~~~~~lGGl~~Li~lL~-s~~~~ir~~Aa~vLg~~aqNNp~~Q  204 (397)
                      +.++++.+.+.  +++.+..|+..+..++..-.  .-..+++.|++|+|+.+|. ++++.+|..|+|+|++++.+++..+
T Consensus        78 l~~lv~~l~s~--d~~~q~~a~~~~rklLs~~~~~~i~~ii~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~~  155 (529)
T 3tpo_A           78 VEDIVKGINSN--NLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQT  155 (529)
T ss_dssp             HHHHHHHHTSS--CHHHHHHHHHHHHHHHTSSSCCCHHHHHHTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHH
T ss_pred             HHHHHHHhcCC--CHHHHHHHHHHHHHHHcCCCCchHHHHHHCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHH
Confidence            45566666554  57888899999988775433  3578999999999999995 5679999999999999999999999


Q ss_pred             HHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCc---cHHHHHHHHHHHHH
Q 015951          205 KQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSF---EIRLHRKAVSLVGD  281 (397)
Q Consensus       205 ~~vl~~g~lp~Ll~LL~s~~~~v~~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~---d~klr~kA~~lL~~  281 (397)
                      ..+++.|++|.|+.++.+++..++..|+|||++|+.+++..+..++++||++.|+.+|.++..   ...+++.++|++++
T Consensus       156 ~~vv~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~n  235 (529)
T 3tpo_A          156 KAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSN  235 (529)
T ss_dssp             HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHH
T ss_pred             HHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999999986532   34578899999999


Q ss_pred             HhhchhccCCCCcchhHHhCCcHHHHHHhccCCChHHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHHHH
Q 015951          282 LAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLRTTEALVLKDFCGLDTALERLRQ  355 (397)
Q Consensus       282 L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~dv~E~aL~aL~~L~~~~~~~r~~~~~~~gL~~~L~~Lr~  355 (397)
                      ++.+     ...........|+++.|+.+|.+++++++..|+.+|.+|+.......+.+...+++..++..|++
T Consensus       236 l~~~-----~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~  304 (529)
T 3tpo_A          236 LCRN-----KNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGA  304 (529)
T ss_dssp             HHCC-----CTTCCCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHHHTC
T ss_pred             HHhc-----ccchhhHHHHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhccchHHHHHHhcC
Confidence            9963     22333444456899999999999999999999999999999887777777767777777776654

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24

Probab=99.83  E-value=2.2e-19  Score=183.82  Aligned_cols=175  Identities=13%  Similarity=0.116  Sum_probs=146.0

Q ss_pred             HHHHHHHhhCCCCCHHHHHHHHHHHHhccCCCCch-hHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHHHHH
Q 015951          128 IQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNA-NDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQ  206 (397)
Q Consensus       128 mk~~i~~L~~~~~s~e~k~~AL~~L~~Lve~iDnA-~~~~~lGGl~~Li~lL~s~~~~ir~~Aa~vLg~~aqNNp~~Q~~  206 (397)
                      +..++..|.++  +++.+..|+..|..++..-++. ..+.+.||+|+|+++|++++++++..|+|+|++++..|+..+..
T Consensus         4 l~~lv~~L~s~--~~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~~   81 (457)
T 1xm9_A            4 IPKAVQYLSSQ--DEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLE   81 (457)
T ss_dssp             HHHHHHHHHSS--CTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHH
T ss_pred             HHHHHHHHCCC--CHHHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHH
Confidence            44566777766  4578899999999988665554 48999999999999999999999999999999999999999999


Q ss_pred             HHHcCcHHHHHHhhc-CCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhc--------CCC------ccHHH
Q 015951          207 VLELGALSKLMKMVK-SSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILG--------NSS------FEIRL  271 (397)
Q Consensus       207 vl~~g~lp~Ll~LL~-s~~~~v~~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~--------s~~------~d~kl  271 (397)
                      +.+.|++|.|+++|. +++.+++..|+|||+++..+ +..+..+++ ||++.|+.+|.        ++.      .+..+
T Consensus        82 i~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~-~~~~~~i~~-g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v  159 (457)
T 1xm9_A           82 TRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSST-DELKEELIA-DALPVLADRVIIPFSGWCDGNSNMSREVVDPEV  159 (457)
T ss_dssp             HHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTS-SSTHHHHHH-HHHHHHHHHTTHHHHTCC---------CCCHHH
T ss_pred             HHHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcC-HHhHHHHHh-ccHHHHHHHHhccccccccCccchhcccccHHH
Confidence            999999999999999 77889999999999999988 778888888 99999999993        221      24567


Q ss_pred             HHHHHHHHHHHhhchhccCCCCcchhHHhC-CcHHHHHHhcc
Q 015951          272 HRKAVSLVGDLAKCQLENMHKVEPPLFRDR-FFLKSVVDLTA  312 (397)
Q Consensus       272 r~kA~~lL~~L~~~~l~~~~~~~~~~l~~~-g~v~~Lv~lL~  312 (397)
                      .+.|+|+|++|+.      +++.+..+.+. |+++.|+.+|.
T Consensus       160 ~~~a~~aL~nLs~------~~~~~~~i~~~~g~i~~Lv~lL~  195 (457)
T 1xm9_A          160 FFNATGCLRNLSS------ADAGRQTMRNYSGLIDSLMAYVQ  195 (457)
T ss_dssp             HHHHHHHHHHHTT------SHHHHHHHTTSTTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcc------CHHHHHHHHHcCCCHHHHHHHHH
Confidence            7899999999996      24556666665 77776665554

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A

Probab=99.83  E-value=4.8e-20  Score=183.76  Aligned_cols=207  Identities=13%  Similarity=0.095  Sum_probs=176.2

Q ss_pred             HHHHHHHHHHHHhccCCCCchhHHHhcCCHHHHHHhcCC-----------CCHHHHHHHHHHHHHHhcCChHHHHHHHHc
Q 015951          142 LEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNH-----------PDTDIRKISAWILGKASQNNPLVQKQVLEL  210 (397)
Q Consensus       142 ~e~k~~AL~~L~~Lve~iDnA~~~~~lGGl~~Li~lL~s-----------~~~~ir~~Aa~vLg~~aqNNp~~Q~~vl~~  210 (397)
                      .+.+..|+..|.++.-+.+|.+.++..||+++|+.+|.+           .++++|..|+|+|.+++.+++..+..+...
T Consensus        46 ~~~~~~A~~aL~nls~d~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~i~~~  125 (354)
T 3nmw_A           46 EHQICPAVCVLMKLSFDEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSM  125 (354)
T ss_dssp             GGTHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHC
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHc
Confidence            356677888888888888899999999999999999942           357899999999999999998888888765


Q ss_pred             C-cHHHHHHhhcCCCHHHHHHHHHHHHHHhcC-ChhcHHHHHhcCcHHHHHHhh-cCCCccHHHHHHHHHHHHHHhhchh
Q 015951          211 G-ALSKLMKMVKSSFVEEAVKALYTVSSLIRN-NLAGQEMFYVEAGDLMLQDIL-GNSSFEIRLHRKAVSLVGDLAKCQL  287 (397)
Q Consensus       211 g-~lp~Ll~LL~s~~~~v~~kAl~ALS~LiR~-~~~~~~~f~~~gGi~~L~~lL-~s~~~d~klr~kA~~lL~~L~~~~l  287 (397)
                      + +||.|+++|++++++++..|++||+++..+ ++.++..+.+.||++.|+++| .++  +..++..|+.+|++|+..  
T Consensus       126 ~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~--~~~~~~~A~~aL~nLs~~--  201 (354)
T 3nmw_A          126 KGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVK--KESTLKSVLSALWNLSAH--  201 (354)
T ss_dssp             HHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHCC--CHHHHHHHHHHHHHHHTT--
T ss_pred             CCcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHHhcCC--CHHHHHHHHHHHHHHHcc--
Confidence            4 599999999999999999999999999985 677889999999999999985 444  556899999999999851  


Q ss_pred             ccCCCCcchhHH-hCCcHHHHHHhccCCCh----HHHHHHHHHHHHHhc---CChHHHHHHHhcCChHHHHHHHHH
Q 015951          288 ENMHKVEPPLFR-DRFFLKSVVDLTASADL----DLQEKALAAIKNLLQ---LRTTEALVLKDFCGLDTALERLRQ  355 (397)
Q Consensus       288 ~~~~~~~~~~l~-~~g~v~~Lv~lL~~~d~----dv~E~aL~aL~~L~~---~~~~~r~~~~~~~gL~~~L~~Lr~  355 (397)
                         .++.+..+. ..|.++.|+.+|.+++.    ++++.|+.+|.+|+.   ..+..++.+.+.+++.+++..|++
T Consensus       202 ---~~~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~  274 (354)
T 3nmw_A          202 ---CTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKS  274 (354)
T ss_dssp             ---CHHHHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTC
T ss_pred             ---ChhhhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcC
Confidence               334556666 79999999999987654    599999999999997   456688889888888999988864

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A

Probab=99.82  E-value=6.6e-19  Score=185.82  Aligned_cols=196  Identities=13%  Similarity=0.116  Sum_probs=170.0

Q ss_pred             hcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcC-Chhc
Q 015951          167 KLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRN-NLAG  245 (397)
Q Consensus       167 ~lGGl~~Li~lL~s~~~~ir~~Aa~vLg~~aqNNp~~Q~~vl~~g~lp~Ll~LL~s~~~~v~~kAl~ALS~LiR~-~~~~  245 (397)
                      ..+++++||.+|.++++++|..|+++|.+++.+++..+..+.+.|+||.|+++|++++..++..|++||.+|+.+ ++.+
T Consensus        46 ~~~~i~~LV~~L~s~~~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~~~~n  125 (584)
T 3l6x_A           46 RQPELPEVIAMLGFRLDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQDN  125 (584)
T ss_dssp             CCCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHTSSSCHHH
T ss_pred             ccccHHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHCCCCHHHHHHHHHHHHHHHccCCHHH
Confidence            357999999999999999999999999999999999999999999999999999999999999999999999986 6899


Q ss_pred             HHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHHhCCcHHHHHHhcc-------------
Q 015951          246 QEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTA-------------  312 (397)
Q Consensus       246 ~~~f~~~gGi~~L~~lL~s~~~d~klr~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~-------------  312 (397)
                      +..++++||++.|+.+|.+.. +..++..|+++|++|+.      ++..+..+.+ +.++.|+.+|.             
T Consensus       126 k~~I~~~GaIp~LV~LL~s~~-~~~~~e~aa~aL~nLS~------~~~~k~~I~~-~alp~Lv~LL~~p~sg~~~~~~~~  197 (584)
T 3l6x_A          126 KIAIKNCDGVPALVRLLRKAR-DMDLTEVITGTLWNLSS------HDSIKMEIVD-HALHALTDEVIIPHSGWEREPNED  197 (584)
T ss_dssp             HHHHHHTTHHHHHHHHHHHCC-SHHHHHHHHHHHHHHTT------SGGGHHHHHH-HTHHHHHHHTHHHHHCCC------
T ss_pred             HHHHHHcCCHHHHHHHHcCCC-CHHHHHHHHHHHHHHhC------CchhhHHHHh-ccHHHHHHHHhccccccccccccc
Confidence            999999999999999999642 55689999999999985      4567777776 45999999871             


Q ss_pred             -----CCChHHHHHHHHHHHHHhcCChHHHHHHHhcCCh-HHHHHHHHHHhHHhhhhhhhhhhH
Q 015951          313 -----SADLDLQEKALAAIKNLLQLRTTEALVLKDFCGL-DTALERLRQQLQEVMLEEDQRDYA  370 (397)
Q Consensus       313 -----~~d~dv~E~aL~aL~~L~~~~~~~r~~~~~~~gL-~~~L~~Lr~~~~~l~~~e~~~~~~  370 (397)
                           ..+.+++++|..+|.+|+..++..|+.+++++|+ ++++..|+........+++..++|
T Consensus       198 ~k~~~~~d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~ena  261 (584)
T 3l6x_A          198 CKPRHIEWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENC  261 (584)
T ss_dssp             ----CCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHH
T ss_pred             ccccccccHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHH
Confidence                 2368999999999999999988789999988887 688888887654444455566666

>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B

Probab=99.82  E-value=9.8e-19  Score=181.64  Aligned_cols=216  Identities=15%  Similarity=0.184  Sum_probs=184.1

Q ss_pred             HHHHhhCCCCCHHHHHHHHHHHHhccCCCC-chhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHHHHHHHH
Q 015951          131 AIDDLNNSTLSLEDSQRALQELLILVEPID-NANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLE  209 (397)
Q Consensus       131 ~i~~L~~~~~s~e~k~~AL~~L~~Lve~iD-nA~~~~~lGGl~~Li~lL~s~~~~ir~~Aa~vLg~~aqNNp~~Q~~vl~  209 (397)
                      ++..+.++  +++.+..|+..|.+++...+ +...+...|+++.|+.+|.++++.++..|+++|++++.+++..+..+++
T Consensus       256 L~~LL~~~--~~~v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~i~~  333 (529)
T 3tpo_A          256 LVRLLHHN--DPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVID  333 (529)
T ss_dssp             HHHHTTSS--CHHHHHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred             HHHHhcCC--cHHHHHHHHHHHHHhhhhhhhhHHHHHhccchHHHHHHhcCCChhHHHHHHHHHHHHHccchHHHHHHhh
Confidence            34444443  56788899999999997664 4456778899999999999999999999999999999999999999999


Q ss_pred             cCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhcc
Q 015951          210 LGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLEN  289 (397)
Q Consensus       210 ~g~lp~Ll~LL~s~~~~v~~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klr~kA~~lL~~L~~~~l~~  289 (397)
                      .|+++.|+.++.++++.++..|+|+|++++.+++.....+++.|+++.|+.+|.++  +.++|..|+|+|++|+..    
T Consensus       334 ~g~l~~L~~LL~~~~~~i~~~a~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~--~~~v~~~A~~aL~nl~~~----  407 (529)
T 3tpo_A          334 AGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKA--DFKTQKAAAWAITNYTSG----  407 (529)
T ss_dssp             TTGGGGHHHHTTCSSHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHHHSS--CHHHHHHHHHHHHHHHHH----
T ss_pred             cccHHHHHHHHcCCCHHHHHHHHHHHHHHhcccHHHHHHHHhcCcHHHHHHHhcCC--CHHHHHHHHHHHHHHHcC----
Confidence            99999999999999999999999999999999999999999999999999999987  667999999999999873    


Q ss_pred             CCCCcchhHHhCCcHHHHHHhccCCChHHHHHHHHHHHHHhcCCh------HHHHHHHhcCChHHHHHHHHH
Q 015951          290 MHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLRT------TEALVLKDFCGLDTALERLRQ  355 (397)
Q Consensus       290 ~~~~~~~~l~~~g~v~~Lv~lL~~~d~dv~E~aL~aL~~L~~~~~------~~r~~~~~~~gL~~~L~~Lr~  355 (397)
                      .+++....+.+.|+++.|+++|.+.|++++..++.+|.++....+      ..+..+.++||++. |+.|+.
T Consensus       408 ~~~~~~~~l~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~~~~~~~~~~~~~~iee~ggl~~-ie~Lq~  478 (529)
T 3tpo_A          408 GTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDK-IEALQR  478 (529)
T ss_dssp             SCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTCHHH-HTGGGG
T ss_pred             CCHHHHHHHHHCcCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHhccChHHHHHHHHHCCcHHH-HHHHHc
Confidence            355667789999999999999999999999999999999985321      23345665666644 455543

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24

Probab=99.82  E-value=3.7e-19  Score=182.16  Aligned_cols=191  Identities=13%  Similarity=0.171  Sum_probs=165.0

Q ss_pred             CHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHH
Q 015951          170 GLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMF  249 (397)
Q Consensus       170 Gl~~Li~lL~s~~~~ir~~Aa~vLg~~aqNNp~~Q~~vl~~g~lp~Ll~LL~s~~~~v~~kAl~ALS~LiR~~~~~~~~f  249 (397)
                      .+|.|+.+|+++++++|..|+++|++++.+++.++..+.+.|++|.|+++|+++++.++..|++||.+|..+++.+...+
T Consensus         3 ~l~~lv~~L~s~~~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~~i   82 (457)
T 1xm9_A            3 TIPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLET   82 (457)
T ss_dssp             CHHHHHHHHHSSCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHH
T ss_pred             CHHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence            58999999999999999999999999999999899999999999999999999999999999999999999989999999


Q ss_pred             HhcCcHHHHHHhhc-CCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHHhCCcHHHHHHhc--------cC-------
Q 015951          250 YVEAGDLMLQDILG-NSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLT--------AS-------  313 (397)
Q Consensus       250 ~~~gGi~~L~~lL~-s~~~d~klr~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL--------~~-------  313 (397)
                      +++||++.|+++|. ++  +..++..|+|+|++|+.      ++..+..+.+ |.++.|+.+|        .+       
T Consensus        83 ~~~G~i~~Lv~lL~~~~--~~~~~~~a~~aL~nLa~------~~~~~~~i~~-g~i~~Lv~ll~~~~s~~~~~~~~~~~e  153 (457)
T 1xm9_A           83 RRQNGIREAVSLLRRTG--NAEIQKQLTGLLWNLSS------TDELKEELIA-DALPVLADRVIIPFSGWCDGNSNMSRE  153 (457)
T ss_dssp             HHTTCHHHHHHHHTTCC--CHHHHHHHHHHHHHHHT------SSSTHHHHHH-HHHHHHHHHTTHHHHTCC---------
T ss_pred             HHcCCHHHHHHHHhhCC--CHHHHHHHHHHHHHHhc------CHHhHHHHHh-ccHHHHHHHHhccccccccCccchhcc
Confidence            99999999999998 65  56799999999999995      4678888888 9999999999        32       


Q ss_pred             -CChHHHHHHHHHHHHHhcCChHHHHHHHhc-CChHHHHHHHHHHhHHhhhhhhhhhhH
Q 015951          314 -ADLDLQEKALAAIKNLLQLRTTEALVLKDF-CGLDTALERLRQQLQEVMLEEDQRDYA  370 (397)
Q Consensus       314 -~d~dv~E~aL~aL~~L~~~~~~~r~~~~~~-~gL~~~L~~Lr~~~~~l~~~e~~~~~~  370 (397)
                       .+++++..|+.+|.+|+.. +..++.+.+. |++++++..|+........+.+..++|
T Consensus       154 ~~~~~v~~~a~~aL~nLs~~-~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a  211 (457)
T 1xm9_A          154 VVDPEVFFNATGCLRNLSSA-DAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENC  211 (457)
T ss_dssp             CCCHHHHHHHHHHHHHHTTS-HHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHH
T ss_pred             cccHHHHHHHHHHHHHHccC-HHHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHH
Confidence             2456777999999999998 6688889876 778888888887644333333344444

>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A

Probab=99.81  E-value=5.5e-18  Score=174.56  Aligned_cols=221  Identities=15%  Similarity=0.171  Sum_probs=189.2

Q ss_pred             HHHHHHHHhhCCCCCHHHHHHHHHHHHhccCCC--CchhHHHhcCCHHHHHHhcCCCC-HHHHHHHHHHHHHHhcCChHH
Q 015951          127 LIQIAIDDLNNSTLSLEDSQRALQELLILVEPI--DNANDLSKLGGLSVLVGQLNHPD-TDIRKISAWILGKASQNNPLV  203 (397)
Q Consensus       127 lmk~~i~~L~~~~~s~e~k~~AL~~L~~Lve~i--DnA~~~~~lGGl~~Li~lL~s~~-~~ir~~Aa~vLg~~aqNNp~~  203 (397)
                      .+..+++.|.++  +++.+..|+..|..++...  ++...++..|++|.|+.+|.+++ +.+|..|+|+|++++..++..
T Consensus        75 ~l~~lv~~L~s~--~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~  152 (528)
T 4b8j_A           75 SLPAMIGGVYSD--DNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSEN  152 (528)
T ss_dssp             CHHHHHHHHTSS--CHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHH
T ss_pred             HHHHHHHHHcCC--CHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHH
Confidence            366677777654  5788999999998886543  56788999999999999998876 999999999999999999999


Q ss_pred             HHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHh
Q 015951          204 QKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLA  283 (397)
Q Consensus       204 Q~~vl~~g~lp~Ll~LL~s~~~~v~~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klr~kA~~lL~~L~  283 (397)
                      +..+++.|++|.|+.+|.++++.++..|+++|++++.+++.....+...|+++.|+.+|.+. .+..++..|+|+|++|+
T Consensus       153 ~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~-~~~~v~~~a~~~L~~L~  231 (528)
T 4b8j_A          153 TKVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEH-TKLSMLRNATWTLSNFC  231 (528)
T ss_dssp             HHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTT-CCHHHHHHHHHHHHHHH
T ss_pred             HHHHHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcC-CCHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999899999999999999999543 36779999999999999


Q ss_pred             hchhccCCCCcchhHHhCCcHHHHHHhccCCChHHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHHHHH
Q 015951          284 KCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLRTTEALVLKDFCGLDTALERLRQQ  356 (397)
Q Consensus       284 ~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~dv~E~aL~aL~~L~~~~~~~r~~~~~~~gL~~~L~~Lr~~  356 (397)
                      ..     . .........|+++.|+.+|.+++..++..++.+|.+|+...+...+.+.+.+++..++..|+..
T Consensus       232 ~~-----~-~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~  298 (528)
T 4b8j_A          232 RG-----K-PQPSFEQTRPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHP  298 (528)
T ss_dssp             CS-----S-SCCCHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTCHHHHHHHTTCS
T ss_pred             cC-----C-CCCcHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHcCC
Confidence            63     2 2233445689999999999999999999999999999988766555666577778877766543

>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A

Probab=99.81  E-value=1e-18  Score=179.95  Aligned_cols=217  Identities=16%  Similarity=0.177  Sum_probs=185.4

Q ss_pred             HHHHHHHhhCCCCCHHHHHHHHHHHHhccCCCCch-hHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHHHHH
Q 015951          128 IQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNA-NDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQ  206 (397)
Q Consensus       128 mk~~i~~L~~~~~s~e~k~~AL~~L~~Lve~iDnA-~~~~~lGGl~~Li~lL~s~~~~ir~~Aa~vLg~~aqNNp~~Q~~  206 (397)
                      +..++..+.+.  +++.+..|+..|.+++...++. ..+...|+++.|+.+|.++++.++..|+++|++++.+++..++.
T Consensus       246 l~~L~~lL~~~--~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~  323 (528)
T 4b8j_A          246 LPALARLIHSN--DEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIVTGDDAQTQC  323 (528)
T ss_dssp             HHHHHHHTTCC--CHHHHHHHHHHHHHHTSSCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred             HHHHHHHHCCC--CHHHHHHHHHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHcCCChhHHHHHHHHHHHHHcCCHHHHHH
Confidence            34455555443  5678889999999999776543 57788899999999999999999999999999999999999999


Q ss_pred             HHHcCcHHHHHHhhcCC-CHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhc
Q 015951          207 VLELGALSKLMKMVKSS-FVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKC  285 (397)
Q Consensus       207 vl~~g~lp~Ll~LL~s~-~~~v~~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klr~kA~~lL~~L~~~  285 (397)
                      +++.|++|.|+.+|.++ +..++..|+|+|++++.+++.....+++.|+++.|+.+|.++  +..++..|+++|++|+..
T Consensus       324 ~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~~~~~~~~~~~~~~~i~~L~~lL~~~--~~~v~~~a~~aL~nl~~~  401 (528)
T 4b8j_A          324 IIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNKDQIQAVINAGIIGPLVNLLQTA--EFDIKKEAAWAISNATSG  401 (528)
T ss_dssp             HHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTCHHHHHHHHHHS--CHHHHHHHHHHHHHHHHH
T ss_pred             HHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHhcC--CHHHHHHHHHHHHHHHcC
Confidence            99999999999999998 889999999999999998888888999999999999999976  668999999999999973


Q ss_pred             hhccCCCCcchhHHhCCcHHHHHHhccCCChHHHHHHHHHHHHHhcCChH-----------HHHHHHhcCChHHHHHHH
Q 015951          286 QLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLRTT-----------EALVLKDFCGLDTALERL  353 (397)
Q Consensus       286 ~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~dv~E~aL~aL~~L~~~~~~-----------~r~~~~~~~gL~~~L~~L  353 (397)
                          .++.....+.+.|+++.|+.+|..+|+.++..++.+|.+|+...+.           ....+.+.+|++.+ ..|
T Consensus       402 ----~~~~~~~~l~~~~~i~~L~~lL~~~d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l-~~L  475 (528)
T 4b8j_A          402 ----GSHDQIKYLVSEGCIKPLCDLLICPDIRIVTVCLEGLENILKVGETDKTLAAGDVNVFSQMIDEAEGLEKI-ENL  475 (528)
T ss_dssp             ----SCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHHHHHHHTCSCCHHHHHHHHTTHHHHH-HHG
T ss_pred             ----CCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhhcccccccHHHHHHHHCCcHHHH-HHH
Confidence                3566778888999999999999999999999999999999976543           34556655555544 334

>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...

Probab=99.81  E-value=1.1e-18  Score=180.75  Aligned_cols=208  Identities=14%  Similarity=0.179  Sum_probs=180.2

Q ss_pred             CHHHHHHHHHHHHhccCCCCc-hhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCcHHHHHHh
Q 015951          141 SLEDSQRALQELLILVEPIDN-ANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKM  219 (397)
Q Consensus       141 s~e~k~~AL~~L~~Lve~iDn-A~~~~~lGGl~~Li~lL~s~~~~ir~~Aa~vLg~~aqNNp~~Q~~vl~~g~lp~Ll~L  219 (397)
                      +++.+..|+..|.+++...++ ...+...|+++.|+.+|.++++.++..|+++|++++..++..+..+++.|++|.|+.+
T Consensus       245 ~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~al~aL~nl~~~~~~~~~~i~~~g~l~~L~~L  324 (510)
T 3ul1_B          245 DPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSL  324 (510)
T ss_dssp             CHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGCC-C
T ss_pred             CHHHHHHHHHHHHHHhhchhhhHHHHHhcccchhhhhhhcCCChhhhhHHHHHHHHhhcCCHHHHHHHhhccchHHHHHH
Confidence            567888999999999976654 4567788999999999999999999999999999999999999999999999999999


Q ss_pred             hcCCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHH
Q 015951          220 VKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFR  299 (397)
Q Consensus       220 L~s~~~~v~~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klr~kA~~lL~~L~~~~l~~~~~~~~~~l~  299 (397)
                      +.+++..++..|+|+|++++.+++.....+++.|+++.|+.++.++  +.++|..|+|+|++++..    .+++....+.
T Consensus       325 L~~~~~~v~~~A~~aL~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~~--~~~v~~~Aa~aL~Nl~~~----~~~~~~~~L~  398 (510)
T 3ul1_B          325 LTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKA--DFKTQKEAAWAITNYTSG----GTVEQIVYLV  398 (510)
T ss_dssp             TTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSS--CHHHHHHHHHHHHHHHHH----CCHHHHHHHH
T ss_pred             hcCCCHHHHHHHHHHHHHHHcCcHHHHHHHHhcCCHHHHHHHHcCC--CHHHHHHHHHHHHHHHcc----CCHHHHHHHH
Confidence            9999999999999999999999999999999999999999999987  678999999999999973    3556677899


Q ss_pred             hCCcHHHHHHhccCCChHHHHHHHHHHHHHhcCCh------HHHHHHHhcCChHHHHHHHHH
Q 015951          300 DRFFLKSVVDLTASADLDLQEKALAAIKNLLQLRT------TEALVLKDFCGLDTALERLRQ  355 (397)
Q Consensus       300 ~~g~v~~Lv~lL~~~d~dv~E~aL~aL~~L~~~~~------~~r~~~~~~~gL~~~L~~Lr~  355 (397)
                      +.|+++.|+++|.+.|++++..++.+|.++....+      ..+..|.++||+ ..|+.|+.
T Consensus       399 ~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~~~~~~~~~~~~~~iee~ggl-~~ie~Lq~  459 (510)
T 3ul1_B          399 HCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGL-DKIEALQR  459 (510)
T ss_dssp             HTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTHH-HHHHHGGG
T ss_pred             HCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHhccchHHHHHHHHHcCcH-HHHHHHHc
Confidence            99999999999999999999999999999986422      233456645555 45566644

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}

Probab=99.79  E-value=9.7e-19  Score=164.89  Aligned_cols=197  Identities=13%  Similarity=0.141  Sum_probs=163.3

Q ss_pred             HHHHHHHhhCCCCCHHHHHHHHHHHHhcc-CCCCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHHHHH
Q 015951          128 IQIAIDDLNNSTLSLEDSQRALQELLILV-EPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQ  206 (397)
Q Consensus       128 mk~~i~~L~~~~~s~e~k~~AL~~L~~Lv-e~iDnA~~~~~lGGl~~Li~lL~s~~~~ir~~Aa~vLg~~aqNNp~~Q~~  206 (397)
                      +..+++.|.+++...+.+..|...|..++ ++.++...+...||+|+|+++|.++++++|..|+|+|++++..|+..+..
T Consensus        10 i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~nk~~   89 (233)
T 3tt9_A           10 LERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDNKLE   89 (233)
T ss_dssp             HHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHH
Confidence            45567778777655567778888888877 46678889999999999999999999999999999999999999999999


Q ss_pred             HHHcCcHHHHHHhhc-CCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhc---C-----------CCccHHH
Q 015951          207 VLELGALSKLMKMVK-SSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILG---N-----------SSFEIRL  271 (397)
Q Consensus       207 vl~~g~lp~Ll~LL~-s~~~~v~~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~---s-----------~~~d~kl  271 (397)
                      +.+.|+||+|+++|. +.+.+++..|..||.+|.. ++.+...+.+ +|++.|+.++.   +           ...+..+
T Consensus        90 I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~-~~~~k~~i~~-~~i~~Lv~ll~~p~sG~~~~~~~~~~~~~~~~v  167 (233)
T 3tt9_A           90 VAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSS-NDKLKNLMIT-EALLTLTENIIIPFSGWPEGDYPKANGLLDFDI  167 (233)
T ss_dssp             HHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHT-SGGGHHHHHH-HHHHHHCCCCCHHHHCCCGGGCCCCCTTCCHHH
T ss_pred             HHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHc-ChhhHHHHHh-ccHHHHHHHHhccccCCcccccccccccchHHH
Confidence            999999999999998 4678888888888888764 4566666665 58999998763   1           1135689


Q ss_pred             HHHHHHHHHHHhhchhccCCCCcchhHHhC-CcHHHHHHhccC------CChHHHHHHHHHHHHHhc
Q 015951          272 HRKAVSLVGDLAKCQLENMHKVEPPLFRDR-FFLKSVVDLTAS------ADLDLQEKALAAIKNLLQ  331 (397)
Q Consensus       272 r~kA~~lL~~L~~~~l~~~~~~~~~~l~~~-g~v~~Lv~lL~~------~d~dv~E~aL~aL~~L~~  331 (397)
                      +.+|+.+|.+|+.     .+++.+..+.+. |+|+.|+.+++.      .+...+|.++.+|.+|+.
T Consensus       168 ~~na~~~L~nLss-----~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs~  229 (233)
T 3tt9_A          168 FYNVTGCLRNMSS-----AGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLSY  229 (233)
T ss_dssp             HHHHHHHHHHHTT-----SCHHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHHhc-----CCHHHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHh
Confidence            9999999999985     355788888875 789999999875      266899999999999974

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A

Probab=99.79  E-value=2.2e-17  Score=170.57  Aligned_cols=218  Identities=15%  Similarity=0.144  Sum_probs=186.9

Q ss_pred             HHHHHHHhhCCCCCHHHHHHHHHHHHhccCCC--CchhHHHhcCCHHHHHHhcCCC-CHHHHHHHHHHHHHHhcCChHHH
Q 015951          128 IQIAIDDLNNSTLSLEDSQRALQELLILVEPI--DNANDLSKLGGLSVLVGQLNHP-DTDIRKISAWILGKASQNNPLVQ  204 (397)
Q Consensus       128 mk~~i~~L~~~~~s~e~k~~AL~~L~~Lve~i--DnA~~~~~lGGl~~Li~lL~s~-~~~ir~~Aa~vLg~~aqNNp~~Q  204 (397)
                      +..+++.|.++  +++.+..|+..|..++...  .+...+...|++|.|+.+|.++ ++.+|..|+|+|++++..++..+
T Consensus        89 i~~lv~~L~s~--~~~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~~~  166 (530)
T 1wa5_B           89 LPQMTQQLNSD--DMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQT  166 (530)
T ss_dssp             HHHHHHHHSCS--SHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHH
T ss_pred             HHHHHHHHcCC--CHHHHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHH
Confidence            55566677654  5788999999999987643  4456788899999999999987 89999999999999999999999


Q ss_pred             HHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhh
Q 015951          205 KQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAK  284 (397)
Q Consensus       205 ~~vl~~g~lp~Ll~LL~s~~~~v~~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klr~kA~~lL~~L~~  284 (397)
                      ..+++.|++|.|+.+|.+++..++..|+++|++++.+++.....+...|+++.|+.++.++  +..++..|+++|++|+.
T Consensus       167 ~~~~~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~--~~~v~~~a~~~L~~L~~  244 (530)
T 1wa5_B          167 KVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSN--KPSLIRTATWTLSNLCR  244 (530)
T ss_dssp             HHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSC--CHHHHHHHHHHHHHHHC
T ss_pred             HHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHhccC--CHHHHHHHHHHHHHHhC
Confidence            9999999999999999998999999999999999999888899999999999999999985  66799999999999996


Q ss_pred             chhccCCCCcchhHHhCCcHHHHHHhccCCChHHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHHH
Q 015951          285 CQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLRTTEALVLKDFCGLDTALERLR  354 (397)
Q Consensus       285 ~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~dv~E~aL~aL~~L~~~~~~~r~~~~~~~gL~~~L~~Lr  354 (397)
                      .     ...........++++.|+.+|.++++.++..++.+|.+|+...+...+.+.+.+++..++..|+
T Consensus       245 ~-----~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv~lL~  309 (530)
T 1wa5_B          245 G-----KKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLS  309 (530)
T ss_dssp             C-----SSSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGG
T ss_pred             C-----CCCCCcHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhcCcHHHHHHHHC
Confidence            3     2133345566899999999999999999999999999999887655566665677777777664

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A

Probab=99.79  E-value=6.9e-18  Score=168.46  Aligned_cols=200  Identities=19%  Similarity=0.158  Sum_probs=174.2

Q ss_pred             HHHHHHHHhhCCCCCHHHHHHHHHHHHhccCCC-CchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHHHH
Q 015951          127 LIQIAIDDLNNSTLSLEDSQRALQELLILVEPI-DNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQK  205 (397)
Q Consensus       127 lmk~~i~~L~~~~~s~e~k~~AL~~L~~Lve~i-DnA~~~~~lGGl~~Li~lL~s~~~~ir~~Aa~vLg~~aqNNp~~Q~  205 (397)
                      .+..++..+.+.  +++.+..++..|.+++... ++...+...|+++.|+.+|.++++.+|..|+++|++++.+++...+
T Consensus       193 ~l~~L~~~l~~~--~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~  270 (450)
T 2jdq_A          193 CLNVLSWLLFVS--DTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTGDDIQTQ  270 (450)
T ss_dssp             GHHHHHHHTTCC--CHHHHHHHHHHHHHHTSSSHHHHHHHHHTTTHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred             HHHHHHHHHccC--CHHHHHHHHHHHHHHHCCCcHHHHHHHHcCcHHHHHHHHCCCchhHHHHHHHHHHHHhhCChHHHH
Confidence            344455555543  4677888999999998754 5667788889999999999999999999999999999999998888


Q ss_pred             HHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhc
Q 015951          206 QVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKC  285 (397)
Q Consensus       206 ~vl~~g~lp~Ll~LL~s~~~~v~~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klr~kA~~lL~~L~~~  285 (397)
                      .+++.|++|.|++++.+++..++..|+++|++++.+++...+.+++.|+++.|+.+|.++  +.++|..|+++|++|+..
T Consensus       271 ~~~~~~~l~~L~~ll~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~--~~~v~~~a~~~L~~l~~~  348 (450)
T 2jdq_A          271 VILNCSALQSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQTA--EFRTRKEAAWAITNATSG  348 (450)
T ss_dssp             HHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHHS--CHHHHHHHHHHHHHHHHH
T ss_pred             HHHHCccHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcC--CHHHHHHHHHHHHHHHcC
Confidence            899999999999999998899999999999999999888888899999999999999976  567999999999999863


Q ss_pred             hhccCCCCcchhHHhCCcHHHHHHhccCCChHHHHHHHHHHHHHhcCCh
Q 015951          286 QLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLRT  334 (397)
Q Consensus       286 ~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~dv~E~aL~aL~~L~~~~~  334 (397)
                          .++.....+.+.|+++.|+.++..++..+++.++.+|.+++...+
T Consensus       349 ----~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~  393 (450)
T 2jdq_A          349 ----GSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVALNGLENILRLGE  393 (450)
T ss_dssp             ----CCHHHHHHHHHHTCHHHHHHGGGSSCHHHHHHHHHHHHHHHHHHH
T ss_pred             ----CCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHhch
Confidence                234556667788999999999999999999999999999997543

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}

Probab=99.79  E-value=1.9e-18  Score=177.73  Aligned_cols=198  Identities=14%  Similarity=0.071  Sum_probs=172.5

Q ss_pred             HHHHHHHhhCCCCCHHHHHHHHHHHHhccCC--CCchhHHHhcCCHHHHHHhc-CCCCHHHHHHHHHHHHHHhcCChHHH
Q 015951          128 IQIAIDDLNNSTLSLEDSQRALQELLILVEP--IDNANDLSKLGGLSVLVGQL-NHPDTDIRKISAWILGKASQNNPLVQ  204 (397)
Q Consensus       128 mk~~i~~L~~~~~s~e~k~~AL~~L~~Lve~--iDnA~~~~~lGGl~~Li~lL-~s~~~~ir~~Aa~vLg~~aqNNp~~Q  204 (397)
                      +..++..|.++  +++.+..|...|.++...  .+|...+...||+++|+++| .+++++++..|+.+|++++..++..+
T Consensus       245 Ip~LV~LL~s~--~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s~~~~v~~~A~~aL~nLs~~~~~nk  322 (458)
T 3nmz_A          245 MRALVAQLKSE--SEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENK  322 (458)
T ss_dssp             HHHHHHGGGCS--CHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHCHHHH
T ss_pred             HHHHHHHHhCC--CHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhcCCCHHHHHHHHHHHHHHccCCHHHH
Confidence            45566677644  578889999999998764  45778889999999999975 67889999999999999998778888


Q ss_pred             HHHH-HcCcHHHHHHhhcCCCH----HHHHHHHHHHHHHhc---CChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHH
Q 015951          205 KQVL-ELGALSKLMKMVKSSFV----EEAVKALYTVSSLIR---NNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAV  276 (397)
Q Consensus       205 ~~vl-~~g~lp~Ll~LL~s~~~----~v~~kAl~ALS~LiR---~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klr~kA~  276 (397)
                      ..+. ..|++|.|+++|.+.++    +++..|+++|+++..   .++.+++.++++||++.|+.+|.++  +..++..|+
T Consensus       323 ~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv~LL~~~--~~~v~~~A~  400 (458)
T 3nmz_A          323 ADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSH--SLTIVSNAC  400 (458)
T ss_dssp             HHHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHSSCS--CHHHHHHHH
T ss_pred             HHHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHHHHHHHHcCC--ChHHHHHHH
Confidence            8888 78999999999997654    489999999999986   6888999999999999999999986  567999999


Q ss_pred             HHHHHHhhchhccCCCCcchhHHhCCcHHHHHHhccCCChHHHHHHHHHHHHHhcCCh
Q 015951          277 SLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLRT  334 (397)
Q Consensus       277 ~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~dv~E~aL~aL~~L~~~~~  334 (397)
                      ++|++|+.     .+++.+..+.+.|+++.|+++|.+++..+++.|+.||.+|+...+
T Consensus       401 ~aL~nLa~-----~~~~~~~~i~~~G~I~~Lv~LL~s~~~~v~~~Aa~AL~nL~~~~p  453 (458)
T 3nmz_A          401 GTLWNLSA-----RNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRP  453 (458)
T ss_dssp             HHHHHHHS-----SCHHHHHHHHHHTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTCCS
T ss_pred             HHHHHHHc-----CCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCH
Confidence            99999984     356788889999999999999999999999999999999998754

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}

Probab=99.78  E-value=4.9e-18  Score=184.89  Aligned_cols=224  Identities=10%  Similarity=0.018  Sum_probs=185.8

Q ss_pred             HHHHHHHHHhhCCCCCHHHHHHHHHHHHhccCCCCchhHHHh-cCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCh---
Q 015951          126 QLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSK-LGGLSVLVGQLNHPDTDIRKISAWILGKASQNNP---  201 (397)
Q Consensus       126 ~lmk~~i~~L~~~~~s~e~k~~AL~~L~~Lve~iDnA~~~~~-lGGl~~Li~lL~s~~~~ir~~Aa~vLg~~aqNNp---  201 (397)
                      .+++.++..|.++..+.+.+..|.+.|.||..+.+....++. .|++|+|+.+|+++++.++..|+|+|++++...+   
T Consensus       377 ~Lv~~l~~lL~~~~~d~~v~~~AveaLayLS~~~~vk~~lv~d~g~Ip~LV~LL~s~d~~i~~~al~~L~NLt~~~d~q~  456 (810)
T 3now_A          377 KLAEACRRFLIKPGKDKDIRRWAADGLAYLTLDAECKEKLIEDKASIHALMDLARGGNQSCLYGVVTTFVNLCNAYEKQE  456 (810)
T ss_dssp             HHHHHHHHHHHCSSCCSSHHHHHHHHHHHHTTSHHHHHHHHHCHHHHHHHHHHHHTTCGGGHHHHHHHHHHHTTCSCCCC
T ss_pred             HHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCcHHHHHHHHccchHHHHHHHhCCCChHHHHHHHHHHHHHcCCchhhh
Confidence            456777888887755668899999999999999999999886 6899999999999999999999999999998542   


Q ss_pred             --------------------------HHH---HHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHHHhc
Q 015951          202 --------------------------LVQ---KQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVE  252 (397)
Q Consensus       202 --------------------------~~Q---~~vl~~g~lp~Ll~LL~s~~~~v~~kAl~ALS~LiR~~~~~~~~f~~~  252 (397)
                                                .++   +.+++.|++|.|+++++++++.++..|+|||++++. ++.++..++++
T Consensus       457 ~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaGaVp~LV~LL~s~s~~vqe~Aa~aL~NLA~-d~~~r~~Vv~~  535 (810)
T 3now_A          457 MLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTALCALAKTESHNSQELIARVLNAVCG-LKELRGKVVQE  535 (810)
T ss_dssp             CCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHTCCCHHHHHHHHHHHHHHHT-SHHHHHHHHHT
T ss_pred             hhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcC-CHHHHHHHHHC
Confidence                                      234   688999999999999999999999999999999985 56789999999


Q ss_pred             CcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcc-hhHHhCCcHHHHHHhccCC-ChHHHHHHHHHHHHHh
Q 015951          253 AGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEP-PLFRDRFFLKSVVDLTASA-DLDLQEKALAAIKNLL  330 (397)
Q Consensus       253 gGi~~L~~lL~s~~~d~klr~kA~~lL~~L~~~~l~~~~~~~~-~~l~~~g~v~~Lv~lL~~~-d~dv~E~aL~aL~~L~  330 (397)
                      ||+++|+.+|.++  +...|+.|+|+|++|+.+    .++... ..-...|+++.|+.+|.++ +...+..|+.||.+|+
T Consensus       536 Gaip~Lv~LL~s~--~~~~k~~Aa~AL~nL~~~----~~p~~~~~~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa  609 (810)
T 3now_A          536 GGVKALLRMALEG--TEKGKRHATQALARIGIT----INPEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLA  609 (810)
T ss_dssp             THHHHHHHHHHSS--CHHHHHHHHHHHHHHHHH----SCHHHHTTTHHHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHT
T ss_pred             CCHHHHHHHHccC--CHHHHHHHHHHHHHHhcC----CChhhhhcchhhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHh
Confidence            9999999999987  557899999999999863    222210 0001246899999999876 4345578999999999


Q ss_pred             cCChHHHHHHHhcCChHHHHHHHHHH
Q 015951          331 QLRTTEALVLKDFCGLDTALERLRQQ  356 (397)
Q Consensus       331 ~~~~~~r~~~~~~~gL~~~L~~Lr~~  356 (397)
                      ..++..++.+.+.||++.++..|.+.
T Consensus       610 ~~~d~~~~~Ii~aG~l~~Lv~LL~s~  635 (810)
T 3now_A          610 SMNESVRQRIIKEQGVSKIEYYLMED  635 (810)
T ss_dssp             TSCHHHHHHHHHTTHHHHHHHHHHSC
T ss_pred             cCCHHHHHHHHHcCCHHHHHHHHcCC
Confidence            99877777777788888888876643

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A

Probab=99.77  E-value=2.1e-17  Score=164.97  Aligned_cols=221  Identities=15%  Similarity=0.165  Sum_probs=184.1

Q ss_pred             HHHHHHHHHhhCCCCCHHHHHHHHHHHHhccCC-CCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHHH
Q 015951          126 QLIQIAIDDLNNSTLSLEDSQRALQELLILVEP-IDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQ  204 (397)
Q Consensus       126 ~lmk~~i~~L~~~~~s~e~k~~AL~~L~~Lve~-iDnA~~~~~lGGl~~Li~lL~s~~~~ir~~Aa~vLg~~aqNNp~~Q  204 (397)
                      ..+..+++.+.+.. +++.+..|+..|..++.. .++...+...|+++.|+.+|+++++++|..|+++|++++.+++..+
T Consensus        64 ~~i~~L~~~L~~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~  142 (450)
T 2jdq_A           64 GVVARFVEFLKRKE-NCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCR  142 (450)
T ss_dssp             THHHHHHHHHTCTT-CHHHHHHHHHHHHHHHSSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             CcHHHHHHHHCCCC-CHHHHHHHHHHHHHHhcCCHHHHHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHH
Confidence            35666777776652 567888999999998864 4667778889999999999999999999999999999999999999


Q ss_pred             HHHHHcCcHHHHHHhhcC-CCHHHHHHHHHHHHHHhcCC-hhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHH
Q 015951          205 KQVLELGALSKLMKMVKS-SFVEEAVKALYTVSSLIRNN-LAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDL  282 (397)
Q Consensus       205 ~~vl~~g~lp~Ll~LL~s-~~~~v~~kAl~ALS~LiR~~-~~~~~~f~~~gGi~~L~~lL~s~~~d~klr~kA~~lL~~L  282 (397)
                      ..+++.|++|.|++++.+ .+..++..|+++|++++++. +.....++ .++++.|+.++.++  +..++..++++|.+|
T Consensus       143 ~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~-~~~l~~L~~~l~~~--~~~v~~~a~~~L~~l  219 (450)
T 2jdq_A          143 DYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKV-SPCLNVLSWLLFVS--DTDVLADACWALSYL  219 (450)
T ss_dssp             HHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCSSSCCCGGGT-GGGHHHHHHHTTCC--CHHHHHHHHHHHHHH
T ss_pred             HHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHH-HHHHHHHHHHHccC--CHHHHHHHHHHHHHH
Confidence            999999999999999996 57899999999999999876 44333333 79999999999976  567999999999999


Q ss_pred             hhchhccCCCCcchhHHhCCcHHHHHHhccCCChHHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHHHH
Q 015951          283 AKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLRTTEALVLKDFCGLDTALERLRQ  355 (397)
Q Consensus       283 ~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~dv~E~aL~aL~~L~~~~~~~r~~~~~~~gL~~~L~~Lr~  355 (397)
                      +..     .+.....+.+.|+++.++.+|.+++..+++.|+.+|.+++...+...+.+.+.++++.++..|+.
T Consensus       220 ~~~-----~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~  287 (450)
T 2jdq_A          220 SDG-----PNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSS  287 (450)
T ss_dssp             TSS-----SHHHHHHHHHTTTHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHTTC
T ss_pred             HCC-----CcHHHHHHHHcCcHHHHHHHHCCCchhHHHHHHHHHHHHhhCChHHHHHHHHCccHHHHHHHHcC
Confidence            852     33456677889999999999999999999999999999998876655555545556666665543

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A

Probab=99.77  E-value=1.5e-17  Score=171.73  Aligned_cols=221  Identities=14%  Similarity=0.126  Sum_probs=186.6

Q ss_pred             HHHHHHHHhhCCCCCHHHHHHHHHHHHhccCCC-CchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHHHH
Q 015951          127 LIQIAIDDLNNSTLSLEDSQRALQELLILVEPI-DNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQK  205 (397)
Q Consensus       127 lmk~~i~~L~~~~~s~e~k~~AL~~L~~Lve~i-DnA~~~~~lGGl~~Li~lL~s~~~~ir~~Aa~vLg~~aqNNp~~Q~  205 (397)
                      .+..+++.|.+++ +++.+..|+..|..++... ++...+...|++++|+.+|.++++.+|..|+|+|++++.+++..+.
T Consensus       131 ~i~~Lv~~L~~~~-~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~  209 (530)
T 1wa5_B          131 VVPRLVEFMRENQ-PEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRD  209 (530)
T ss_dssp             CHHHHHHTTSTTS-CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             CHHHHHHHhCCCC-CHHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccchH
Confidence            4555666666542 5678889999999988754 5667788899999999999999999999999999999999999999


Q ss_pred             HHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhc
Q 015951          206 QVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKC  285 (397)
Q Consensus       206 ~vl~~g~lp~Ll~LL~s~~~~v~~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klr~kA~~lL~~L~~~  285 (397)
                      .++..|++|.|+.++.+.+..++..|+++|++++++..+....+...++++.|+.++.++  +..++..|+++|.+|+. 
T Consensus       210 ~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~--d~~v~~~a~~~L~~L~~-  286 (530)
T 1wa5_B          210 YVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSM--DTETLVDACWAISYLSD-  286 (530)
T ss_dssp             HHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCSSSCCCHHHHGGGHHHHHHHTTCC--CHHHHHHHHHHHHHHHS-
T ss_pred             HHHHcCcHHHHHHHhccCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHhHHHHHHHHHcCC--CHHHHHHHHHHHHHHhC-
Confidence            999999999999999998889999999999999998744455666789999999999976  56799999999999995 


Q ss_pred             hhccCCCCcchhHHhCCcHHHHHHhccCCChHHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHHHH
Q 015951          286 QLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLRTTEALVLKDFCGLDTALERLRQ  355 (397)
Q Consensus       286 ~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~dv~E~aL~aL~~L~~~~~~~r~~~~~~~gL~~~L~~Lr~  355 (397)
                          ..+.....+.+.|+++.|+.+|.+++..+++.|+.+|.+++...+...+.+.+.+++..++..|+.
T Consensus       287 ----~~~~~~~~~~~~~~v~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~  352 (530)
T 1wa5_B          287 ----GPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSS  352 (530)
T ss_dssp             ----SCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTC
T ss_pred             ----CCHHHHHHHHhcCcHHHHHHHHCCCChhhHHHHHHHHHHHHcCCHHHHHHHHHcchHHHHHHHHcC
Confidence                234556778889999999999999999999999999999998776666666545666666665543

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A

Probab=99.76  E-value=5.6e-17  Score=165.49  Aligned_cols=222  Identities=16%  Similarity=0.183  Sum_probs=182.0

Q ss_pred             HHHHHHHHHhhCCCCCHHHHHHHHHHHHhccCCCCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHHHH
Q 015951          126 QLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQK  205 (397)
Q Consensus       126 ~lmk~~i~~L~~~~~s~e~k~~AL~~L~~Lve~iDnA~~~~~lGGl~~Li~lL~s~~~~ir~~Aa~vLg~~aqNNp~~Q~  205 (397)
                      ..+..+++.|.+. .+++.+..|+..|..+....++...+.+.|++++|+.+|+++++.+|..|+++|++++.+++..+.
T Consensus        59 ~~i~~Lv~~L~~~-~~~~~~~~a~~~L~~ls~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~  137 (529)
T 1jdh_A           59 QMVSAIVRTMQNT-NDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKM  137 (529)
T ss_dssp             HHHHHHHHHHHHC-CCHHHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHH
T ss_pred             chHHHHHHHHhcC-CCHHHHHHHHHHHHHHHcCchhHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcchHH
Confidence            3456677777654 267788899999999988888899999999999999999999999999999999999998888899


Q ss_pred             HHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhc
Q 015951          206 QVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKC  285 (397)
Q Consensus       206 ~vl~~g~lp~Ll~LL~s~~~~v~~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klr~kA~~lL~~L~~~  285 (397)
                      .+.+.|++|.|++++.+++..++..++.+|+++..+++.++..+.+.||++.|+.+++++. +...+..++.+|.+|+. 
T Consensus       138 ~i~~~g~i~~L~~ll~~~~~~~~~~~~~~L~~la~~~~~~~~~i~~~~~i~~L~~ll~~~~-~~~~~~~a~~~L~~l~~-  215 (529)
T 1jdh_A          138 AVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYT-YEKLLWTTSRVLKVLSV-  215 (529)
T ss_dssp             HHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCC-CHHHHHHHHHHHHHHTT-
T ss_pred             HHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHhCC-hHHHHHHHHHHHHHHhc-
Confidence            9999999999999999988899999999999999999999999999999999999998653 33455556666666653 


Q ss_pred             hhccCCCCcchhHHhCC---------------------------------------cHHHHHHhccCCChHHHHHHHHHH
Q 015951          286 QLENMHKVEPPLFRDRF---------------------------------------FLKSVVDLTASADLDLQEKALAAI  326 (397)
Q Consensus       286 ~l~~~~~~~~~~l~~~g---------------------------------------~v~~Lv~lL~~~d~dv~E~aL~aL  326 (397)
                           ++..+..+.+.|                                       +++.++.+|.++++++++.++.+|
T Consensus       216 -----~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L  290 (529)
T 1jdh_A          216 -----CSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGIL  290 (529)
T ss_dssp             -----STTHHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHHHTTCTTCSCCHHHHHHHHHHTTCSCHHHHHHHHHHH
T ss_pred             -----CcccHHHHHHCCCHHHHHHHHhCCChHHHHHHHHHHHHHhcCChhhHHHHhHHHHHHHHHcCCCHHHHHHHHHHH
Confidence                 233334444444                                       455666666777888999999999


Q ss_pred             HHHhcCChHHHHHHHhcCChHHHHHHHHH
Q 015951          327 KNLLQLRTTEALVLKDFCGLDTALERLRQ  355 (397)
Q Consensus       327 ~~L~~~~~~~r~~~~~~~gL~~~L~~Lr~  355 (397)
                      .+|+..++..+..+.+.++++.++..|+.
T Consensus       291 ~~L~~~~~~~~~~~~~~~~v~~L~~ll~~  319 (529)
T 1jdh_A          291 SNLTCNNYKNKMMVCQVGGIEALVRTVLR  319 (529)
T ss_dssp             HHHTTTCHHHHHHHHHTTHHHHHHHHHHH
T ss_pred             HHHhcCCHHHHHHHHHcCChHHHHHHHHc
Confidence            99988776677778778888888887765

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}

Probab=99.75  E-value=9.8e-18  Score=182.55  Aligned_cols=217  Identities=12%  Similarity=0.045  Sum_probs=182.4

Q ss_pred             HHHHHHHhhCCCCCHHHHHHHHHHHHhccCCCCchhHHH---hcCCHHHHHHhcCCC-CHHHHHHHHHHHHHHhcCChHH
Q 015951          128 IQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLS---KLGGLSVLVGQLNHP-DTDIRKISAWILGKASQNNPLV  203 (397)
Q Consensus       128 mk~~i~~L~~~~~s~e~k~~AL~~L~~Lve~iDnA~~~~---~lGGl~~Li~lL~s~-~~~ir~~Aa~vLg~~aqNNp~~  203 (397)
                      ++-++..|.++  +++.+..|...|..++...+....|.   ..|++|+|+.+|.++ +...+..|+|+|++++..++..
T Consensus       538 ip~Lv~LL~s~--~~~~k~~Aa~AL~nL~~~~~p~~~~~~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~~  615 (810)
T 3now_A          538 VKALLRMALEG--TEKGKRHATQALARIGITINPEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMNESV  615 (810)
T ss_dssp             HHHHHHHHHSS--CHHHHHHHHHHHHHHHHHSCHHHHTTTHHHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHH
T ss_pred             HHHHHHHHccC--CHHHHHHHHHHHHHHhcCCChhhhhcchhhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCHHH
Confidence            44466666654  46778899999998886666554442   257999999999875 4455679999999999999999


Q ss_pred             HHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHHHh-cCcHHHHHHhhcCCCccHHHHHHHHHHHHHH
Q 015951          204 QKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYV-EAGDLMLQDILGNSSFEIRLHRKAVSLVGDL  282 (397)
Q Consensus       204 Q~~vl~~g~lp~Ll~LL~s~~~~v~~kAl~ALS~LiR~~~~~~~~f~~-~gGi~~L~~lL~s~~~d~klr~kA~~lL~~L  282 (397)
                      ++.+++.|++|+|+.++.++++.++..|+++|++++.+ +..+..|+. .|+++.|+.++.++  +..+|..|+|+|++|
T Consensus       616 ~~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa~~-~~~~~~~v~~~g~l~~Lv~LL~s~--d~~vq~~Aa~ALanL  692 (810)
T 3now_A          616 RQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMS-EDVIKMFEGNNDRVKFLALLCEDE--DEETATACAGALAII  692 (810)
T ss_dssp             HHHHHHTTHHHHHHHHHHSCCTTHHHHHHHHHHHHTTS-HHHHHHHHSSSSHHHHHHHGGGCS--SHHHHHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCC-hHHHHHHHhccCcHHHHHHHhcCC--CHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999875 567888885 78999999999986  678999999999999


Q ss_pred             hhchhccCCCCcchhHHh-CCcHHHHHHhccCCChHHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHHH
Q 015951          283 AKCQLENMHKVEPPLFRD-RFFLKSVVDLTASADLDLQEKALAAIKNLLQLRTTEALVLKDFCGLDTALERLR  354 (397)
Q Consensus       283 ~~~~l~~~~~~~~~~l~~-~g~v~~Lv~lL~~~d~dv~E~aL~aL~~L~~~~~~~r~~~~~~~gL~~~L~~Lr  354 (397)
                      +..     ++.....+.+ .|+++.|+.+|.++|.+++..|+.+|.+++..++..+..+.+.|+++++...|+
T Consensus       693 t~~-----s~~~~~~ii~~~g~I~~Lv~LL~s~d~~vq~~A~~aL~NL~~~s~e~~~~l~e~G~i~~L~~LL~  760 (810)
T 3now_A          693 TSV-----SVKCCEKILAIASWLDILHTLIANPSPAVQHRGIVIILNMINAGEEIAKKLFETDIMELLSGLGQ  760 (810)
T ss_dssp             HHH-----CHHHHHHHHTSTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHTSTHHHHHTTSCC
T ss_pred             hCC-----CHHHHHHHHHHcCCHHHHHHHHCCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHh
Confidence            962     4456667777 899999999999999999999999999999987778888887777877766554

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*

Probab=99.74  E-value=3.9e-17  Score=158.98  Aligned_cols=166  Identities=14%  Similarity=0.021  Sum_probs=147.2

Q ss_pred             HHHHHHHHHHHHHHhcCChHHHHHHHHcCcHHHHHH-hhcCCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHh
Q 015951          183 TDIRKISAWILGKASQNNPLVQKQVLELGALSKLMK-MVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDI  261 (397)
Q Consensus       183 ~~ir~~Aa~vLg~~aqNNp~~Q~~vl~~g~lp~Ll~-LL~s~~~~v~~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~l  261 (397)
                      .+-|..|+..|..++.+ ......|.+.|++|+|+. +|.++++.++..|+|+|++++.+++..++.+++.||++.|+.+
T Consensus        54 ~e~k~~Al~~L~~lv~~-~dna~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~L  132 (296)
T 1xqr_A           54 QQEREGALELLADLCEN-MDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRL  132 (296)
T ss_dssp             HHHHHHHHHHHHHHHTS-HHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhC-hhhHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHH
Confidence            46799999999999974 568888999999999999 9999999999999999999999999999999999999999999


Q ss_pred             hcCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHHhCCcHHHHHHhccCCChHHHHHHHHHHHHHhcCChHHHHHHH
Q 015951          262 LGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLRTTEALVLK  341 (397)
Q Consensus       262 L~s~~~d~klr~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~dv~E~aL~aL~~L~~~~~~~r~~~~  341 (397)
                      |+++ .+..++++|+|+|++|+.+     ++.....|.+.|.++.|+.+|++++..++..|+.+|.+|+...+..++.+.
T Consensus       133 L~~~-~~~~v~~~A~~ALsnl~~~-----~~~~~~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~~~~~~~~vv  206 (296)
T 1xqr_A          133 LDRD-ACDTVRVKALFAISCLVRE-----QEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLC  206 (296)
T ss_dssp             HHHC-SCHHHHHHHHHHHHHHHTT-----CHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHH
T ss_pred             HccC-CCHHHHHHHHHHHHHHHcC-----CcHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCChHHHHHHH
Confidence            9853 2467999999999999962     445566788899999999999999999999999999999988777778888


Q ss_pred             hcCChHHHHHHHHH
Q 015951          342 DFCGLDTALERLRQ  355 (397)
Q Consensus       342 ~~~gL~~~L~~Lr~  355 (397)
                      +.|++++++..|+.
T Consensus       207 ~~g~i~~Lv~LL~~  220 (296)
T 1xqr_A          207 SMGMVQQLVALVRT  220 (296)
T ss_dssp             HTTHHHHHHHHHTS
T ss_pred             HcCCHHHHHHHHcC
Confidence            78888888887764

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}

Probab=99.74  E-value=2.4e-16  Score=167.18  Aligned_cols=223  Identities=15%  Similarity=0.162  Sum_probs=187.4

Q ss_pred             HHHHHHHHHhhCCCCCHHHHHHHHHHHHhccCCCCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHHHH
Q 015951          126 QLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQK  205 (397)
Q Consensus       126 ~lmk~~i~~L~~~~~s~e~k~~AL~~L~~Lve~iDnA~~~~~lGGl~~Li~lL~s~~~~ir~~Aa~vLg~~aqNNp~~Q~  205 (397)
                      ..+..+++.|.+. .+++.+..|+..|..+....++...+.+.|+++.|+.+|+++++.+|..|+++|++++.+++..+.
T Consensus        56 ~~i~~Lv~~L~~~-~~~~~~~~A~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~  134 (644)
T 2z6h_A           56 QMVSAIVRTMQNT-NDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKM  134 (644)
T ss_dssp             HHHHHHHHHHHSC-CCHHHHHHHHHHHHHHTTSHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSTTHHH
T ss_pred             ChHHHHHHHHhcC-CCHHHHHHHHHHHHHHhcChhhHHHHHHcCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchhHH
Confidence            4566777888764 367888899999999988888889999999999999999999999999999999999998888999


Q ss_pred             HHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhc
Q 015951          206 QVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKC  285 (397)
Q Consensus       206 ~vl~~g~lp~Ll~LL~s~~~~v~~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klr~kA~~lL~~L~~~  285 (397)
                      .+.+.|++|.|+++|++++..++..++.+|++++.+++.++..+.+.||++.|+.++.+.. ...++..++.+|.+|+. 
T Consensus       135 ~v~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~~i~~~g~v~~Lv~lL~~~~-~~~~~~~a~~~L~nLs~-  212 (644)
T 2z6h_A          135 AVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYT-YEKLLWTTSRVLKVLSV-  212 (644)
T ss_dssp             HHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTTCC-CHHHHHHHHHHHHHHTT-
T ss_pred             HHHHCCChHHHHHHHCcCCHHHHHHHHHHHHHHHhcCcHHHHHHHHcCChHHHHHHHHcCC-hHHHHHHHHHHHHHHhc-
Confidence            9999999999999999988888889999999999888999999999999999999999763 45678889999999985 


Q ss_pred             hhccCCCCcchhHHhCCcHHHHH---------------------------------------HhccCCChHHHHHHHHHH
Q 015951          286 QLENMHKVEPPLFRDRFFLKSVV---------------------------------------DLTASADLDLQEKALAAI  326 (397)
Q Consensus       286 ~l~~~~~~~~~~l~~~g~v~~Lv---------------------------------------~lL~~~d~dv~E~aL~aL  326 (397)
                           .+..+..+.+.|+++.|+                                       .+|.+++.++++.|+.+|
T Consensus       213 -----~~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL  287 (644)
T 2z6h_A          213 -----CSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGIL  287 (644)
T ss_dssp             -----CTTHHHHHHHTTHHHHHHTTTTCSCHHHHHHHHHHHHHHGGGCTTCCSCHHHHHHHHHHTTCSCHHHHHHHHHHH
T ss_pred             -----CcccHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcchhhhhhhhHHHHHHHHHcCCCHHHHHHHHHHH
Confidence                 445566666666655554                                       455556778888888888


Q ss_pred             HHHhcCChHHHHHHHhcCChHHHHHHHHHH
Q 015951          327 KNLLQLRTTEALVLKDFCGLDTALERLRQQ  356 (397)
Q Consensus       327 ~~L~~~~~~~r~~~~~~~gL~~~L~~Lr~~  356 (397)
                      .+|+..++..++.+.+.++++.++..|+..
T Consensus       288 ~~L~~~~~~~~~~v~~~g~v~~Lv~lL~~~  317 (644)
T 2z6h_A          288 SNLTCNNYKNKMMVCQVGGIEALVRTVLRA  317 (644)
T ss_dssp             HHHHTTCHHHHHHHHHTTHHHHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHcCCHHHHHHHHHcc
Confidence            888887766677777677888888877653

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A

Probab=99.71  E-value=1.3e-16  Score=168.38  Aligned_cols=196  Identities=15%  Similarity=0.095  Sum_probs=164.3

Q ss_pred             HHHHHHHhhCCCCCHHHHHHHHHHHHhccC-CCCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcC-ChHHHH
Q 015951          128 IQIAIDDLNNSTLSLEDSQRALQELLILVE-PIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQN-NPLVQK  205 (397)
Q Consensus       128 mk~~i~~L~~~~~s~e~k~~AL~~L~~Lve-~iDnA~~~~~lGGl~~Li~lL~s~~~~ir~~Aa~vLg~~aqN-Np~~Q~  205 (397)
                      +..++..|.++  +++.+..|...|..++. +.++...+...||+|+|+.+|.++++++|..|+|+|++++.+ |+..+.
T Consensus        50 i~~LV~~L~s~--~~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~~~~nk~  127 (584)
T 3l6x_A           50 LPEVIAMLGFR--LDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQDNKI  127 (584)
T ss_dssp             HHHHHHHTTCS--CHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHTSSSCHHHHH
T ss_pred             HHHHHHHHCCC--CHHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHCCCCHHHHHHHHHHHHHHHccCCHHHHH
Confidence            55667777655  57788889899998884 677888999999999999999999999999999999999985 799999


Q ss_pred             HHHHcCcHHHHHHhhcC-CCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhc----------------CCCcc
Q 015951          206 QVLELGALSKLMKMVKS-SFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILG----------------NSSFE  268 (397)
Q Consensus       206 ~vl~~g~lp~Ll~LL~s-~~~~v~~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~----------------s~~~d  268 (397)
                      .+.+.|+||.|+++|.+ .+.+++..|.+||.+|.. ++.+...+++ +|++.|++++.                ....+
T Consensus       128 ~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~-~~~~k~~I~~-~alp~Lv~LL~~p~sg~~~~~~~~~k~~~~~d  205 (584)
T 3l6x_A          128 AIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSS-HDSIKMEIVD-HALHALTDEVIIPHSGWEREPNEDCKPRHIEW  205 (584)
T ss_dssp             HHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTT-SGGGHHHHHH-HTHHHHHHHTHHHHHCCC----------CCCC
T ss_pred             HHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhC-CchhhHHHHh-ccHHHHHHHHhccccccccccccccccccccc
Confidence            99999999999999997 467889999999999976 5677777774 78999999872                01125


Q ss_pred             HHHHHHHHHHHHHHhhchhccCCCCcchhHHh-CCcHHHHHHhccC------CChHHHHHHHHHHHHHhcC
Q 015951          269 IRLHRKAVSLVGDLAKCQLENMHKVEPPLFRD-RFFLKSVVDLTAS------ADLDLQEKALAAIKNLLQL  332 (397)
Q Consensus       269 ~klr~kA~~lL~~L~~~~l~~~~~~~~~~l~~-~g~v~~Lv~lL~~------~d~dv~E~aL~aL~~L~~~  332 (397)
                      ..++.+|+++|.+|+.     .++..+..+++ .|+++.|+.+|++      .+...+|.|+.+|.+|+..
T Consensus       206 ~~V~~nAa~~L~NLs~-----~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~  271 (584)
T 3l6x_A          206 ESVLTNTAGCLRNVSS-----ERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQ  271 (584)
T ss_dssp             HHHHHHHHHHHHHHTS-----SCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHhc-----CCHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhcc
Confidence            6899999999999985     24455777776 5778899999864      4678999999999999965

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}

Probab=99.69  E-value=1.9e-15  Score=164.57  Aligned_cols=222  Identities=16%  Similarity=0.206  Sum_probs=183.1

Q ss_pred             HHHHHHHHHhhCCCCCHHHHHHHHHHHHhccCCCCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHHHH
Q 015951          126 QLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQK  205 (397)
Q Consensus       126 ~lmk~~i~~L~~~~~s~e~k~~AL~~L~~Lve~iDnA~~~~~lGGl~~Li~lL~s~~~~ir~~Aa~vLg~~aqNNp~~Q~  205 (397)
                      ..+..+++.|.+.. +++.+..|+..|..+....++...+...|+++.|+.+|+++++.+|..|+++|++++.+++..+.
T Consensus       192 ~~i~~Lv~~L~~~~-d~~vr~~Aa~aL~~Ls~~~~~~~~i~~~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~  270 (780)
T 2z6g_A          192 QMVSAIVRTMQNTN-DVETARCTSGTLHNLSHHREGLLAIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGAKM  270 (780)
T ss_dssp             HHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTHHH
T ss_pred             ChHHHHHHHHcCCC-CHHHHHHHHHHHHHHhCCchhHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCChhhHH
Confidence            45556666776543 67889999999999888888888899999999999999999999999999999999999888999


Q ss_pred             HHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhc
Q 015951          206 QVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKC  285 (397)
Q Consensus       206 ~vl~~g~lp~Ll~LL~s~~~~v~~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klr~kA~~lL~~L~~~  285 (397)
                      .+.+.|++|.|++++.+++..++..++.+|++++.+++.++..+.+.||++.|+.++++++ +...+..++.++.+|+..
T Consensus       271 ~v~~~g~v~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~e~~~~i~~~~~i~~Lv~lL~~~~-~~~~~~~a~~aL~~Ls~~  349 (780)
T 2z6g_A          271 AVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYT-YEKLLWTTSRVLKVLSVC  349 (780)
T ss_dssp             HHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHHTTCC-CHHHHHHHHHHHHHHHTS
T ss_pred             HHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCC-HHHHHHHHHHHHHHhhcC
Confidence            9999999999999999988889999999999999889999999999999999999999763 344555667777777642


Q ss_pred             hhccCCCCcchhHHhC---------------------------------------CcHHHHHHhccCCChHHHHHHHHHH
Q 015951          286 QLENMHKVEPPLFRDR---------------------------------------FFLKSVVDLTASADLDLQEKALAAI  326 (397)
Q Consensus       286 ~l~~~~~~~~~~l~~~---------------------------------------g~v~~Lv~lL~~~d~dv~E~aL~aL  326 (397)
                            +..+..+.+.                                       ++++.|+.+|.+.+..+++.|+.+|
T Consensus       350 ------~~~~~~i~~~g~l~~Ll~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~i~~Lv~lL~~~d~~vr~~A~~aL  423 (780)
T 2z6g_A          350 ------SSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGIL  423 (780)
T ss_dssp             ------TTHHHHHHHTTHHHHHGGGTTCSCHHHHHHHHHHHHHHHTTCTTCSCCHHHHHHHHHHTTCSCHHHHHHHHHHH
T ss_pred             ------hHHHHHHHHhchHHHHHHHHcCCchHHHHHHHHHHHHHhccchhhhhhhhHHHHHHHHHcCCCHHHHHHHHHHH
Confidence                  2223333333                                       4566666777778889999999999


Q ss_pred             HHHhcCChHHHHHHHhcCChHHHHHHHHH
Q 015951          327 KNLLQLRTTEALVLKDFCGLDTALERLRQ  355 (397)
Q Consensus       327 ~~L~~~~~~~r~~~~~~~gL~~~L~~Lr~  355 (397)
                      .+|+..++..+..+.+.++++.++..|..
T Consensus       424 ~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~  452 (780)
T 2z6g_A          424 SNLTCNNYKNKMMVCQVGGIEALVRTVLR  452 (780)
T ss_dssp             HHHTSSCHHHHHHHHTTTHHHHHHHHHHH
T ss_pred             HHHHhCCHHHHHHHHHCCCHHHHHHHHHc
Confidence            99998876677777777888888888865

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A

Probab=99.68  E-value=1.7e-15  Score=154.50  Aligned_cols=221  Identities=18%  Similarity=0.151  Sum_probs=181.4

Q ss_pred             HHHHHHHhhCCCCCHHHHHHHHHHHHhccCCCCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHHHHHH
Q 015951          128 IQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQV  207 (397)
Q Consensus       128 mk~~i~~L~~~~~s~e~k~~AL~~L~~Lve~iDnA~~~~~lGGl~~Li~lL~s~~~~ir~~Aa~vLg~~aqNNp~~Q~~v  207 (397)
                      +..++..+.+++ ....+..+...|..+....++...+...|++++|+.+|.+++++++..|+|+|++++.+.+.. .  
T Consensus       187 i~~L~~ll~~~~-~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~-~--  262 (529)
T 1jdh_A          187 PQALVNIMRTYT-YEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQ-E--  262 (529)
T ss_dssp             HHHHHHHHHHCC-CHHHHHHHHHHHHHHTTSTTHHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHHHTTCTTC-S--
T ss_pred             HHHHHHHHHhCC-hHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHHHHhCCChHHHHHHHHHHHHHhcCChhh-H--
Confidence            444556666553 334455667778888888888899999999999999999999999999999999999876532 1  


Q ss_pred             HHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchh
Q 015951          208 LELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQL  287 (397)
Q Consensus       208 l~~g~lp~Ll~LL~s~~~~v~~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klr~kA~~lL~~L~~~~l  287 (397)
                      ...|++|.|++++.+++++++..|+++|+++..+++.....+.+.||++.|+.+|.+++.+..++..|+++|++|+..  
T Consensus       263 ~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~~v~~~a~~~L~nl~~~--  340 (529)
T 1jdh_A          263 GMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSR--  340 (529)
T ss_dssp             CCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSS--
T ss_pred             HHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHHccCCHHHHHHHHHHHHHHHHcC--
Confidence            123789999999999999999999999999999988899999999999999999986433467999999999999852  


Q ss_pred             ccCCCC---cchhHHhCCcHHHHHHhccCCC-hHHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHHHHHhH
Q 015951          288 ENMHKV---EPPLFRDRFFLKSVVDLTASAD-LDLQEKALAAIKNLLQLRTTEALVLKDFCGLDTALERLRQQLQ  358 (397)
Q Consensus       288 ~~~~~~---~~~~l~~~g~v~~Lv~lL~~~d-~dv~E~aL~aL~~L~~~~~~~r~~~~~~~gL~~~L~~Lr~~~~  358 (397)
                         ++.   .+..+.+.|.++.|+.+|.+++ ..+++.++.+|.+++..++ .+..+.+.+++..++..|+....
T Consensus       341 ---~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~v~~~a~~~l~nl~~~~~-~~~~~~~~~~i~~L~~ll~~~~~  411 (529)
T 1jdh_A          341 ---HQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPA-NHAPLREQGAIPRLVQLLVRAHQ  411 (529)
T ss_dssp             ---STTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGG-GHHHHHHTTHHHHHHHHHHHHHH
T ss_pred             ---CchHHHHHHHHHHcCChhHHHHHhccccchHHHHHHHHHHHHHhcChh-hhHHHHHcCCHHHHHHHHHHHhH
Confidence               233   3567889999999999999886 5999999999999998765 55677767777888888876543

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}

Probab=99.66  E-value=3.2e-15  Score=158.45  Aligned_cols=221  Identities=18%  Similarity=0.168  Sum_probs=176.5

Q ss_pred             HHHHHHHhhCCCCCHHHHHHHHHHHHhccCCCCchhHHHhcCCHHHHHHh------------------------------
Q 015951          128 IQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQ------------------------------  177 (397)
Q Consensus       128 mk~~i~~L~~~~~s~e~k~~AL~~L~~Lve~iDnA~~~~~lGGl~~Li~l------------------------------  177 (397)
                      +..++..+.+.+ ..+.+..++..|..+....++...+.+.|+++.|+.+                              
T Consensus       184 v~~Lv~lL~~~~-~~~~~~~a~~~L~nLs~~~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~  262 (644)
T 2z6h_A          184 PQALVNIMRTYT-YEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGME  262 (644)
T ss_dssp             HHHHHHHHTTCC-CHHHHHHHHHHHHHHTTCTTHHHHHHHTTHHHHHHTTTTCSCHHHHHHHHHHHHHHGGGCTTCCSCH
T ss_pred             hHHHHHHHHcCC-hHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcchhhhhhh
Confidence            445666666553 3345556677777777777777777777777766554                              


Q ss_pred             ---------cCCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCcHHHHHHhhcCCC--HHHHHHHHHHHHHHhcCCh---
Q 015951          178 ---------LNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSF--VEEAVKALYTVSSLIRNNL---  243 (397)
Q Consensus       178 ---------L~s~~~~ir~~Aa~vLg~~aqNNp~~Q~~vl~~g~lp~Ll~LL~s~~--~~v~~kAl~ALS~LiR~~~---  243 (397)
                               |.++++++|..|+|+|++++.+++..+..+.+.|+++.|+.++.+.+  +.++..|+++|++++.+++   
T Consensus       263 ~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~~~v~~~a~~aL~nL~~~~~~~~  342 (644)
T 2z6h_A          263 GLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAE  342 (644)
T ss_dssp             HHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHH
T ss_pred             hHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHHccCCcHHHHHHHHHHHHHHhcCCchHH
Confidence                     45577888999999999999989999999999999999999998633  7899999999999998765   


Q ss_pred             hcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHHhCCcHHHHHHhccCC---------
Q 015951          244 AGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASA---------  314 (397)
Q Consensus       244 ~~~~~f~~~gGi~~L~~lL~s~~~d~klr~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~---------  314 (397)
                      ..+..++..||++.|+.+|.+++ +..++..|+++|++|+.      ++..+..+.+.|+++.|+++|...         
T Consensus       343 ~~q~~v~~~~~l~~L~~lL~~~~-~~~v~~~a~~~L~nLa~------~~~~~~~i~~~~~i~~Lv~lL~~~~~~vr~~a~  415 (644)
T 2z6h_A          343 MAQNAVRLHYGLPVVVKLLHPPS-HWPLIKATVGLIRNLAL------CPANHAPLREQGAIPRLVQLLVRAHQDTQRRTS  415 (644)
T ss_dssp             HHHHHHHHTTHHHHHHHTTSTTC-CHHHHHHHHHHHHHHTT------SGGGHHHHHHTTHHHHHHHHHHHHHHHHTTC--
T ss_pred             HHHHHHHHccChHHHHHHhCccC-chHHHHHHHHHHHHHcc------CHHHHHHHHHcCCHHHHHHHHhccchhhhhHhh
Confidence            34566889999999999999763 35689999999999985      345568888999999999998753         


Q ss_pred             -------------ChHHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHHHHHh
Q 015951          315 -------------DLDLQEKALAAIKNLLQLRTTEALVLKDFCGLDTALERLRQQL  357 (397)
Q Consensus       315 -------------d~dv~E~aL~aL~~L~~~~~~~r~~~~~~~gL~~~L~~Lr~~~  357 (397)
                                   +.++++.++.+|.+|+... ..+..+.+.+++++++..|+...
T Consensus       416 ~al~n~~~~~~~~~~~v~~~a~~aL~~La~~~-~~~~~l~~~~~i~~Lv~lL~~~~  470 (644)
T 2z6h_A          416 MGGTQQQFVEGVRMEEIVEGCTGALHILARDV-HNRIVIRGLNTIPLFVQLLYSPI  470 (644)
T ss_dssp             --------CCSSCHHHHHHHHHHHHHHHTTSH-HHHHHHHHTTCHHHHHHHTTCSC
T ss_pred             hccccchhcccccHHHHHHHHHHHHHHHhcCH-HHHHHHHhCCcHHHHHHHHcCCC
Confidence                         3568889999999999876 57888887888888888776543

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}

Probab=99.62  E-value=3.3e-15  Score=162.59  Aligned_cols=222  Identities=15%  Similarity=0.066  Sum_probs=180.8

Q ss_pred             HHHHHHHHHHhhCCCCCHHHHHHHHHHHHhccCCC-CchhHHHhcCCHHHHHHhcCC-C-CHHHHHHHHHHHHHHhcCCh
Q 015951          125 AQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPI-DNANDLSKLGGLSVLVGQLNH-P-DTDIRKISAWILGKASQNNP  201 (397)
Q Consensus       125 ~~lmk~~i~~L~~~~~s~e~k~~AL~~L~~Lve~i-DnA~~~~~lGGl~~Li~lL~s-~-~~~ir~~Aa~vLg~~aqNNp  201 (397)
                      ...+..++..+.+.  +.+.+..|+..|.++.... ++...+.+.||++.|+.+|.+ + .+++|..|+++|++++.+++
T Consensus       398 ~~~i~~Lv~lL~~~--d~~vr~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL~~~~~  475 (780)
T 2z6g_A          398 EGLLGTLVQLLGSD--DINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQ  475 (780)
T ss_dssp             HHHHHHHHHHTTCS--CHHHHHHHHHHHHHHTSSCHHHHHHHHTTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSST
T ss_pred             hhHHHHHHHHHcCC--CHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCc
Confidence            45566677777653  5778889999999988764 577888999999999999965 3 35999999999999998776


Q ss_pred             H---HHHHHHHcCcHHHHHHhhcCCCH-HHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCc----------
Q 015951          202 L---VQKQVLELGALSKLMKMVKSSFV-EEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSF----------  267 (397)
Q Consensus       202 ~---~Q~~vl~~g~lp~Ll~LL~s~~~-~v~~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~----------  267 (397)
                      .   .|..+...|++|.|+++|.+++. .++..|+|+|+++.++ +..+..+.+.|+++.|+.+|.++..          
T Consensus       476 ~~~~~~~~v~~~~~l~~L~~lL~~~~~~~v~~~A~~aL~nLa~~-~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~aa~al  554 (780)
T 2z6g_A          476 DAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALC-PANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGG  554 (780)
T ss_dssp             THHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHHSS-HHHHHHHHHTTHHHHHHHHHHHHHHHHHHTTC---
T ss_pred             hHHHHHHHHHHcCCHHHHHHHhcCCChHHHHHHHHHHHHHHhcC-HHHHHHHHHCCCHHHHHHHHHhcchhHHHHHhhcc
Confidence            5   47789999999999999998774 8999999999999985 5667888899999999999975311          


Q ss_pred             ----------cHHHHHHHHHHHHHHhhchhccCCCCcchhHHhCCcHHHHHHhccCCChHHHHHHHHHHHHHhcCChHHH
Q 015951          268 ----------EIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLRTTEA  337 (397)
Q Consensus       268 ----------d~klr~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~dv~E~aL~aL~~L~~~~~~~r  337 (397)
                                ...++..++.+|.+|+.      ++..+..+.+.|+++.|+.+|.+++..++..|+.+|.+|+.+. ..+
T Consensus       555 ~nq~~~~~~~~~~v~~~a~~aL~~La~------~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~-~~~  627 (780)
T 2z6g_A          555 TQQQFVEGVRMEEIVEACTGALHILAR------DIHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDK-EAA  627 (780)
T ss_dssp             ---CCSTTCCHHHHHHHHHHHHHHHTT------SHHHHHHHHHTCCHHHHHHGGGCSCHHHHHHHHHHHHHHHTSH-HHH
T ss_pred             ccchhhcccChHHHHHHHHHHHHHHhc------ChhhHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCH-HHH
Confidence                      12356677778888874      3456677889999999999999999999999999999999774 467


Q ss_pred             HHHHhcCChHHHHHHHHHH
Q 015951          338 LVLKDFCGLDTALERLRQQ  356 (397)
Q Consensus       338 ~~~~~~~gL~~~L~~Lr~~  356 (397)
                      ..+.+.+|++.++..+++.
T Consensus       628 ~~i~~~g~i~~L~~Ll~~~  646 (780)
T 2z6g_A          628 EAIEAEGATAPLTELLHSR  646 (780)
T ss_dssp             HHHHHTTCHHHHHHGGGCS
T ss_pred             HHHHHCCCHHHHHHHHcCC
Confidence            7888788888877655433

>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}

Probab=99.48  E-value=7e-13  Score=142.88  Aligned_cols=219  Identities=15%  Similarity=0.203  Sum_probs=167.4

Q ss_pred             HHHHHHHHHhhCCCCCHHHHHHHHHHHHhccCCCCchhHHHhcCCHHHHHHhcCCCCHH---HHHHHHHHHHHHh-cCCh
Q 015951          126 QLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTD---IRKISAWILGKAS-QNNP  201 (397)
Q Consensus       126 ~lmk~~i~~L~~~~~s~e~k~~AL~~L~~Lve~iDnA~~~~~lGGl~~Li~lL~s~~~~---ir~~Aa~vLg~~a-qNNp  201 (397)
                      ..+.-++..+.+.  ++..+..|...|..+..+.++...+++.||+++|+++|.+....   .|..|+++|+++. ..||
T Consensus       457 GvIp~Lv~Ll~S~--s~~~re~A~~aL~nLS~d~~~R~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~np  534 (778)
T 3opb_A          457 ELISFLKREMHNL--SPNCKQQVVRIIYNITRSKNFIPQLAQQGAVKIILEYLANKQDIGEPIRILGCRALTRMLIFTNP  534 (778)
T ss_dssp             THHHHHHHHGGGS--CHHHHHHHHHHHHHHHTSGGGHHHHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTSCH
T ss_pred             cCHHHHHHHHcCC--CHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCCH
Confidence            4566667777654  67889999999999999999999999999999999999876544   8999999999998 4567


Q ss_pred             HHHHHHHH---cCcHHHHHHhhcC--CCH-----------HH-HHHHHHHHHHHhcCCh----hcHHHHHhc-CcHHHHH
Q 015951          202 LVQKQVLE---LGALSKLMKMVKS--SFV-----------EE-AVKALYTVSSLIRNNL----AGQEMFYVE-AGDLMLQ  259 (397)
Q Consensus       202 ~~Q~~vl~---~g~lp~Ll~LL~s--~~~-----------~v-~~kAl~ALS~LiR~~~----~~~~~f~~~-gGi~~L~  259 (397)
                      ..  .|-.   .|++|+|+.||..  +..           .. +..|+.||.||+....    ..+..++.+ |+++.|.
T Consensus       535 ~~--~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~  612 (778)
T 3opb_A          535 GL--IFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIE  612 (778)
T ss_dssp             HH--HSSSSCSTTHHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHH
T ss_pred             HH--HcCCCccccchHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHH
Confidence            54  2211   3899999999983  211           12 6689999999988752    346777885 9999999


Q ss_pred             HhhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcc-hhHHhC------CcHHHHHHhccCCChHHHHHHHHHHHHHhc-
Q 015951          260 DILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEP-PLFRDR------FFLKSVVDLTASADLDLQEKALAAIKNLLQ-  331 (397)
Q Consensus       260 ~lL~s~~~d~klr~kA~~lL~~L~~~~l~~~~~~~~-~~l~~~------g~v~~Lv~lL~~~d~dv~E~aL~aL~~L~~-  331 (397)
                      .+|.++  +..+|+.|+++++||+.      +++.+ ..+...      +-++.|+.++.++|.++|..|..||.++++ 
T Consensus       613 ~LL~s~--n~~VrrAA~elI~NL~~------~~e~i~~k~~~~~~~~~~~rL~lLV~Ll~s~D~~~r~AAagALAnLts~  684 (778)
T 3opb_A          613 NLMLDE--NVPLQRSTLELISNMMS------HPLTIAAKFFNLENPQSLRNFNILVKLLQLSDVESQRAVAAIFANIATT  684 (778)
T ss_dssp             HGGGCS--SHHHHHHHHHHHHHHHT------SGGGTGGGTSCCSSHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHhCC--CHHHHHHHHHHHHHHhC------CcHHHHHHHHhhcCchhhccHHHHHHHHcCCCHHHHHHHHHHHHHhcCC
Confidence            999986  45699999999999996      33332 233222      237789999999999999999999999975 


Q ss_pred             CChHHHHHHHhcCChHHHHHHHHHH
Q 015951          332 LRTTEALVLKDFCGLDTALERLRQQ  356 (397)
Q Consensus       332 ~~~~~r~~~~~~~gL~~~L~~Lr~~  356 (397)
                      .+..++..++..+|++.++..|+.+
T Consensus       685 ~~~ia~~ll~~~~gi~~Ll~lL~~~  709 (778)
T 3opb_A          685 IPLIAKELLTKKELIENAIQVFADQ  709 (778)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred             ChHHHHHHHHccccHHHHHHHHhcc
Confidence            4333555555446788888888874

>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A

Probab=99.46  E-value=2.2e-12  Score=136.16  Aligned_cols=243  Identities=16%  Similarity=0.132  Sum_probs=187.6

Q ss_pred             HhHHHHHHHHHhcC--CCCH--HHHHHHHHHHhhCCCCCHHHHHHHHHHHHhccCCCC------------------chhH
Q 015951          107 KRQMEIKELMEKLK--TPSD--AQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPID------------------NAND  164 (397)
Q Consensus       107 ~r~~~L~ea~~~~~--~~~d--~~lmk~~i~~L~~~~~s~e~k~~AL~~L~~Lve~iD------------------nA~~  164 (397)
                      .||.-+.+. +.+.  -+.+  ..-|+-++.+|.+...+.|--..+|+.|..+....+                  ++..
T Consensus        38 DRR~Av~~L-k~~sk~y~~~Vg~~~l~~li~~L~~d~~D~e~v~~~LetL~~l~~~~~~~~~~~~~~~~~~~~~~~~~d~  116 (651)
T 3grl_A           38 DRRNAVRAL-KSLSKKYRLEVGIQAMEHLIHVLQTDRSDSEIIGYALDTLYNIISNDEEEEVEENSTRQSEDLGSQFTEI  116 (651)
T ss_dssp             HHHHHHHHH-HHTTTTTTTHHHHHTHHHHHHHHHSCTTCHHHHHHHHHHHHHHHCCC--------------CHHHHHHHH
T ss_pred             HHHHHHHHH-HHHHHHhHHHhhhhhHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcccccccccccchHHHHHHHHH
Confidence            356555543 3332  2333  224788999998887777766778888877665432                  2334


Q ss_pred             HH-hcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChH-HHHHHHHc-CcHHHHHHhhcCCCHHHHHHHHHHHHHHhcC
Q 015951          165 LS-KLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPL-VQKQVLEL-GALSKLMKMVKSSFVEEAVKALYTVSSLIRN  241 (397)
Q Consensus       165 ~~-~lGGl~~Li~lL~s~~~~ir~~Aa~vLg~~aqNNp~-~Q~~vl~~-g~lp~Ll~LL~s~~~~v~~kAl~ALS~LiR~  241 (397)
                      |. +-++++.|+.+|++++..+|.+|..+|..++.++|. .|+.++.. +|+|.|+.+|+++.+.+|-.|+..|++++++
T Consensus       117 f~~~~~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d~rE~iRneallLL~~Lt~~  196 (651)
T 3grl_A          117 FIKQQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLADSREVIRNDGVLLLQALTRS  196 (651)
T ss_dssp             HHHSTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGGCSSHHHHHHHHHHHHHHHTT
T ss_pred             HHcCCccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHhCchHHHHHHHHHHHHHHhcC
Confidence            43 348899999999999999999999999999999999 99999965 9999999999998899999999999999999


Q ss_pred             ChhcHHHHHhcCcHHHHHHhhcCCC--ccHHHHHHHHHHHHHHhhchhccCCCCcchhHHhCCcHHHHHHhccCCChH--
Q 015951          242 NLAGQEMFYVEAGDLMLQDILGNSS--FEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLD--  317 (397)
Q Consensus       242 ~~~~~~~f~~~gGi~~L~~lL~s~~--~d~klr~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~d--  317 (397)
                      |+..|+.+.-.||++.|..++....  ..-.+...++.++.+|+.     .++..+..|.+.|+++.|..+|..++..  
T Consensus       197 n~~iQklVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr-----~N~sNQ~~FrEt~~i~~L~~LL~~~~~~~~  271 (651)
T 3grl_A          197 NGAIQKIVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLK-----NNNSNQNFFKEGSYIQRMKPWFEVGDENSG  271 (651)
T ss_dssp             CHHHHHHHHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHT-----TCHHHHHHHHHTTCGGGGGGGGCCCSCSSC
T ss_pred             CHHHHHHHHHhccHHHHHHHHHhcCCCccchhHHHHHHHHHHHHh-----cCHHHHHHHHHcCCHHHHHHHhCCCccccc
Confidence            9999888888899999999998532  123478899999999996     4677888999999999999999765321  


Q ss_pred             ----HHHH---HHHHHHHHhcCC------hHHHHHHHhcCChHHHHHHHHH
Q 015951          318 ----LQEK---ALAAIKNLLQLR------TTEALVLKDFCGLDTALERLRQ  355 (397)
Q Consensus       318 ----v~E~---aL~aL~~L~~~~------~~~r~~~~~~~gL~~~L~~Lr~  355 (397)
                          ....   ++.+++.|+.-+      ..++..+.+.|++.+++..+..
T Consensus       272 W~~Qk~~N~~~~L~iIrlLv~~~~~~~~t~~nQ~~~~~~g~l~~Ll~ll~~  322 (651)
T 3grl_A          272 WSAQKVTNLHLMLQLVRVLVSPNNPPGATSSCQKAMFQCGLLQQLCTILMA  322 (651)
T ss_dssp             CCHHHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHTTHHHHHHHHHTC
T ss_pred             cHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHCCCHHHHHHHHcc
Confidence                2233   677777777652      2355667767777777776543

>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}

Probab=99.41  E-value=4.9e-12  Score=136.35  Aligned_cols=167  Identities=11%  Similarity=0.136  Sum_probs=134.6

Q ss_pred             hhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCcHHHHHHhhcCCCHH---HHHHHHHHHHHH
Q 015951          162 ANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVE---EAVKALYTVSSL  238 (397)
Q Consensus       162 A~~~~~lGGl~~Li~lL~s~~~~ir~~Aa~vLg~~aqNNp~~Q~~vl~~g~lp~Ll~LL~s~~~~---v~~kAl~ALS~L  238 (397)
                      ...+.+.|++|+|+.+++++++.+|..|+|+|++++. ++.++..+++.|+++.|++++.+.+..   .+..|+.||+++
T Consensus       450 ~~~l~eaGvIp~Lv~Ll~S~s~~~re~A~~aL~nLS~-d~~~R~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArL  528 (778)
T 3opb_A          450 EKYILRTELISFLKREMHNLSPNCKQQVVRIIYNITR-SKNFIPQLAQQGAVKIILEYLANKQDIGEPIRILGCRALTRM  528 (778)
T ss_dssp             HHHTTTTTHHHHHHHHGGGSCHHHHHHHHHHHHHHHT-SGGGHHHHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHH
T ss_pred             HHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcC-CHHHHHHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHH
Confidence            3456778999999999999999999999999999995 589999999999999999999987654   799999999998


Q ss_pred             hcCChhcHHHHHh---cCcHHHHHHhhcC-CCc-----------cHHHHHHHHHHHHHHhhchhccCC---CCcchhHHh
Q 015951          239 IRNNLAGQEMFYV---EAGDLMLQDILGN-SSF-----------EIRLHRKAVSLVGDLAKCQLENMH---KVEPPLFRD  300 (397)
Q Consensus       239 iR~~~~~~~~f~~---~gGi~~L~~lL~s-~~~-----------d~klr~kA~~lL~~L~~~~l~~~~---~~~~~~l~~  300 (397)
                      +-...+. ..|-.   .|++++|+.+|.. +..           +..-+..|+.+|+||++.    .+   ++.+..+++
T Consensus       529 lis~np~-~~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~----~~n~~E~~r~~Ii~  603 (778)
T 3opb_A          529 LIFTNPG-LIFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASS----ETSDGEEVCKHIVS  603 (778)
T ss_dssp             HHTSCHH-HHSSSSCSTTHHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHC----CSHHHHHHHHHHHH
T ss_pred             HhcCCHH-HHcCCCccccchHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhcC----CcccchHHHHHHHH
Confidence            8553332 23321   4999999999983 211           112377999999999972    11   245677788


Q ss_pred             C-CcHHHHHHhccCCChHHHHHHHHHHHHHhcCCh
Q 015951          301 R-FFLKSVVDLTASADLDLQEKALAAIKNLLQLRT  334 (397)
Q Consensus       301 ~-g~v~~Lv~lL~~~d~dv~E~aL~aL~~L~~~~~  334 (397)
                      + |+++.+.++|.+++..+|..|+.+|.+|++.++
T Consensus       604 ~~ga~~~L~~LL~s~n~~VrrAA~elI~NL~~~~e  638 (778)
T 3opb_A          604 TKVYWSTIENLMLDENVPLQRSTLELISNMMSHPL  638 (778)
T ss_dssp             SHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHTSGG
T ss_pred             hcCHHHHHHHHHhCCCHHHHHHHHHHHHHHhCCcH
Confidence            5 999999999999999999999999999998654

>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A

Probab=99.12  E-value=1.7e-09  Score=114.20  Aligned_cols=220  Identities=16%  Similarity=0.166  Sum_probs=179.1

Q ss_pred             CCHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhccCCCCchhHHHhcCCHHHHHHhcCC--CCHHHHHHHHHHHHHHhcC
Q 015951          122 PSDAQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNH--PDTDIRKISAWILGKASQN  199 (397)
Q Consensus       122 ~~d~~lmk~~i~~L~~~~~s~e~k~~AL~~L~~Lve~iDnA~~~~~lGGl~~Li~lL~s--~~~~ir~~Aa~vLg~~aqN  199 (397)
                      ++..+.+..+.+.+.+. .-+++|-.|+..|..+..+.   ..-+..+|++.|+..|+.  .+.++-..+..+|.++...
T Consensus        17 qs~~etI~~L~~Rl~~~-tl~eDRR~Av~~Lk~~sk~y---~~~Vg~~~l~~li~~L~~d~~D~e~v~~~LetL~~l~~~   92 (651)
T 3grl_A           17 HTEAETIQKLCDRVASS-TLLDDRRNAVRALKSLSKKY---RLEVGIQAMEHLIHVLQTDRSDSEIIGYALDTLYNIISN   92 (651)
T ss_dssp             -CHHHHHHHHHHHHHHC-CSHHHHHHHHHHHHHTTTTT---TTHHHHHTHHHHHHHHHSCTTCHHHHHHHHHHHHHHHCC
T ss_pred             CChhhHHHHHHHHHhhc-cchhHHHHHHHHHHHHHHHh---HHHhhhhhHHHHHHHHhcccccHHHHHHHHHHHHHHhCC
Confidence            47788899999999884 46799999999999987543   344557899999999954  6888888999999887765


Q ss_pred             ChH-----------------HHHHHH-HcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChh-cHHHHHhc-CcHHHHH
Q 015951          200 NPL-----------------VQKQVL-ELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLA-GQEMFYVE-AGDLMLQ  259 (397)
Q Consensus       200 Np~-----------------~Q~~vl-~~g~lp~Ll~LL~s~~~~v~~kAl~ALS~LiR~~~~-~~~~f~~~-gGi~~L~  259 (397)
                      ++.                 ..+.|+ +.+.++.|+.+|++++-.+|..++..|+.++.+++. .++.+..+ +|++.|+
T Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv  172 (651)
T 3grl_A           93 DEEEEVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLM  172 (651)
T ss_dssp             C--------------CHHHHHHHHHHHSTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHH
T ss_pred             CCcccccccccccchHHHHHHHHHHHcCCccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHH
Confidence            543                 222343 457899999999998889999999999999999988 78888865 9999999


Q ss_pred             HhhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHHhCCcHHHHHHhccCCCh----HHHHHHHHHHHHHhcCChH
Q 015951          260 DILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADL----DLQEKALAAIKNLLQLRTT  335 (397)
Q Consensus       260 ~lL~s~~~d~klr~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~----dv~E~aL~aL~~L~~~~~~  335 (397)
                      .+|.++  ...+|..++.+|.+|+.     .+++.+..+.-+|..+.|++++.....    -+.+-++..|.+|+..+..
T Consensus       173 ~lL~d~--rE~iRneallLL~~Lt~-----~n~~iQklVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N~s  245 (651)
T 3grl_A          173 DLLADS--REVIRNDGVLLLQALTR-----SNGAIQKIVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLKNNNS  245 (651)
T ss_dssp             GGGGCS--SHHHHHHHHHHHHHHHT-----TCHHHHHHHHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHTTCHH
T ss_pred             HHHhCc--hHHHHHHHHHHHHHHhc-----CCHHHHHHHHHhccHHHHHHHHHhcCCCccchhHHHHHHHHHHHHhcCHH
Confidence            999987  34599999999999996     466677777778999999999977543    7899999999999999987


Q ss_pred             HHHHHHhcCChHHHHHH
Q 015951          336 EALVLKDFCGLDTALER  352 (397)
Q Consensus       336 ~r~~~~~~~gL~~~L~~  352 (397)
                      ....|++.+++..+...
T Consensus       246 NQ~~FrEt~~i~~L~~L  262 (651)
T 3grl_A          246 NQNFFKEGSYIQRMKPW  262 (651)
T ss_dssp             HHHHHHHTTCGGGGGGG
T ss_pred             HHHHHHHcCCHHHHHHH
Confidence            88889977777665443

>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A

Probab=99.01  E-value=2.4e-09  Score=114.91  Aligned_cols=171  Identities=12%  Similarity=0.078  Sum_probs=137.0

Q ss_pred             CCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCcHHHHH-HhhcCCCHHHHHHHHHHHHHHhcC-ChhcH
Q 015951          169 GGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLM-KMVKSSFVEEAVKALYTVSSLIRN-NLAGQ  246 (397)
Q Consensus       169 GGl~~Li~lL~s~~~~ir~~Aa~vLg~~aqNNp~~Q~~vl~~g~lp~Ll-~LL~s~~~~v~~kAl~ALS~LiR~-~~~~~  246 (397)
                      +.+.|+++.|+|++++.|..||++|+++++ ++..+..+...|+++.++ .+|.+++.+||..|++||++|+.+ .+...
T Consensus        34 ~~i~Pll~~L~S~~~~~r~~A~~al~~l~~-~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d~~  112 (684)
T 4gmo_A           34 DKILPVLKDLKSPDAKSRTTAAGAIANIVQ-DAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEADFC  112 (684)
T ss_dssp             HTTHHHHHHHSSSCCSHHHHHHHHHHHHTT-SHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHHHH
T ss_pred             hhHHHHHHHcCCCCHHHHHHHHHHHHHHHc-CcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCchHH
Confidence            356788899999999999999999999997 788999999999998765 578888899999999999999876 46677


Q ss_pred             HHHHhcCcHHHHHHhhcCCCc------------c-------HHHHHHHHHHHHHHhhchhccCCCCcchhHHhCCcHHHH
Q 015951          247 EMFYVEAGDLMLQDILGNSSF------------E-------IRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSV  307 (397)
Q Consensus       247 ~~f~~~gGi~~L~~lL~s~~~------------d-------~klr~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~L  307 (397)
                      ..++..|+++.|..++.+...            .       ..+...++.+|++|+..     +.+....+...+.++.+
T Consensus       113 ~~l~~~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~-----s~~~~~~v~~~~~l~~l  187 (684)
T 4gmo_A          113 VHLYRLDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALA-----RDEIHEAVATKQTILRL  187 (684)
T ss_dssp             HHHHHTTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHH-----CHHHHHHHHTCHHHHHH
T ss_pred             HHHHHcChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhC-----CHHHHHHHHhcccHHHH
Confidence            788899999999999853100            0       01233567888898863     44556677788999999


Q ss_pred             HHhccCC---ChHHHHHHHHHHHHHhcCChHHHHHHHhcCC
Q 015951          308 VDLTASA---DLDLQEKALAAIKNLLQLRTTEALVLKDFCG  345 (397)
Q Consensus       308 v~lL~~~---d~dv~E~aL~aL~~L~~~~~~~r~~~~~~~g  345 (397)
                      +..|...   ..+++..|+.+|..|+.++....+.+.+.+.
T Consensus       188 ~~~L~~~~~~~~~v~~~a~~~L~~ls~dn~~~~~~i~~~~~  228 (684)
T 4gmo_A          188 LFRLISADIAPQDIYEEAISCLTTLSEDNLKVGQAITDDQE  228 (684)
T ss_dssp             HHHHHHHCCSCHHHHHHHHHHHHHHHTTCHHHHHHHHTCCS
T ss_pred             HHHHHhcCCCcHHHHHHHHHHHHHHhccCHHHHHHHHhcch
Confidence            9887432   4689999999999999998877777775443

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}

Probab=98.92  E-value=8.9e-08  Score=85.52  Aligned_cols=157  Identities=17%  Similarity=0.154  Sum_probs=127.8

Q ss_pred             CCHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhccCCCCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCh
Q 015951          122 PSDAQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNP  201 (397)
Q Consensus       122 ~~d~~lmk~~i~~L~~~~~s~e~k~~AL~~L~~Lve~iDnA~~~~~lGGl~~Li~lL~s~~~~ir~~Aa~vLg~~aqNNp  201 (397)
                      +.+.......++.|.++  ++..+..|+..|..+-.          -+.++.|+.+|+++++.+|..|+++|+.+..  +
T Consensus        10 ~~~~~~~~~~i~~L~~~--~~~vr~~A~~~L~~~~~----------~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~--~   75 (201)
T 3ltj_A           10 HTDPEKVEMYIKNLQDD--SYYVRRAAAYALGKIGD----------ERAVEPLIKALKDEDAWVRRAAADALGQIGD--E   75 (201)
T ss_dssp             CCCHHHHHHHHHHTTCS--CHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC--G
T ss_pred             ccCCcchHHHHHHhcCC--CHHHHHHHHHHHHhcCC----------hhHHHHHHHHHcCCCHHHHHHHHHHHHhhCC--H
Confidence            34555667777888776  57788888888876433          2578999999999999999999999998853  2


Q ss_pred             HHHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHH
Q 015951          202 LVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGD  281 (397)
Q Consensus       202 ~~Q~~vl~~g~lp~Ll~LL~s~~~~v~~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klr~kA~~lL~~  281 (397)
                               .+++.|+.++.++++.+|..|+++|+.+-  .         ...++.|..++.++  +..+|..|+++|..
T Consensus        76 ---------~~~~~L~~~l~d~~~~vr~~a~~aL~~~~--~---------~~~~~~L~~~l~d~--~~~vr~~a~~aL~~  133 (201)
T 3ltj_A           76 ---------RAVEPLIKALKDEDGWVRQSAAVALGQIG--D---------ERAVEPLIKALKDE--DWFVRIAAAFALGE  133 (201)
T ss_dssp             ---------GGHHHHHHHTTCSSHHHHHHHHHHHHHHC--C---------GGGHHHHHHHTTCS--SHHHHHHHHHHHHH
T ss_pred             ---------HHHHHHHHHHcCCCHHHHHHHHHHHHHhC--c---------HHHHHHHHHHHcCC--CHHHHHHHHHHHHH
Confidence                     57999999999988999999999999872  2         24678888999876  66799999999998


Q ss_pred             HhhchhccCCCCcchhHHhCCcHHHHHHhccCCChHHHHHHHHHHHHHh
Q 015951          282 LAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLL  330 (397)
Q Consensus       282 L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~dv~E~aL~aL~~L~  330 (397)
                      +..                ...++.|..++.++++.++..|+.+|..+.
T Consensus       134 ~~~----------------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~  166 (201)
T 3ltj_A          134 IGD----------------ERAVEPLIKALKDEDGWVRQSAADALGEIG  166 (201)
T ss_dssp             HTC----------------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHC
T ss_pred             hCC----------------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhC
Confidence            742                356788999999999999999999998883

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}

Probab=98.89  E-value=8.5e-08  Score=86.33  Aligned_cols=154  Identities=16%  Similarity=0.141  Sum_probs=123.9

Q ss_pred             HHHHHHHHHHhhCCCCCHHHHHHHHHHHHhccCCCCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHHH
Q 015951          125 AQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQ  204 (397)
Q Consensus       125 ~~lmk~~i~~L~~~~~s~e~k~~AL~~L~~Lve~iDnA~~~~~lGGl~~Li~lL~s~~~~ir~~Aa~vLg~~aqNNp~~Q  204 (397)
                      .+.+..+++.|.++  ++..+..|+..|..+-.          -++++.|+.+|.++++.+|..|+++|+.+..      
T Consensus        18 ~~~~~~L~~~L~~~--~~~vR~~A~~~L~~~~~----------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~------   79 (211)
T 3ltm_A           18 PEKVEMYIKNLQDD--SYYVRRAAAYALGKIGD----------ERAVEPLIKALKDEDAWVRRAAADALGQIGD------   79 (211)
T ss_dssp             GGGHHHHHHHTTCS--SHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSCHHHHHHHHHHHHHHCC------
T ss_pred             HhHHHHHHHHHcCC--CHHHHHHHHHHHHHhCC----------ccHHHHHHHHHcCCCHHHHHHHHHHHHhhCC------
Confidence            44566677777654  57788888888876433          2578999999999999999999999999863      


Q ss_pred             HHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhh
Q 015951          205 KQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAK  284 (397)
Q Consensus       205 ~~vl~~g~lp~Ll~LL~s~~~~v~~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klr~kA~~lL~~L~~  284 (397)
                           .++++.|+.++.++++.+|..|+++|+.+-  .         ...++.|+.++.++  +..+|..|+.+|..+..
T Consensus        80 -----~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~--~---------~~~~~~L~~~l~d~--~~~vr~~a~~aL~~~~~  141 (211)
T 3ltm_A           80 -----ERAVEPLIKALKDEDGWVRQSAAVALGQIG--D---------ERAVEPLIKALKDE--DWFVRIAAAFALGEIGD  141 (211)
T ss_dssp             -----GGGHHHHHHHTTCSSHHHHHHHHHHHHHHC--C---------GGGHHHHHHHTTCS--SHHHHHHHHHHHHHHCC
T ss_pred             -----HHHHHHHHHHHcCCCHHHHHHHHHHHHHhC--c---------HHHHHHHHHHHhCC--CHHHHHHHHHHHHHcCC
Confidence                 257899999999988999999999999873  1         24678888989876  66789999999998742


Q ss_pred             chhccCCCCcchhHHhCCcHHHHHHhccCCChHHHHHHHHHHHHHh
Q 015951          285 CQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLL  330 (397)
Q Consensus       285 ~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~dv~E~aL~aL~~L~  330 (397)
                                      ...++.|..++..+++.++..++.+|..+.
T Consensus       142 ----------------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~  171 (211)
T 3ltm_A          142 ----------------ERAVEPLIKALKDEDGWVRQSAADALGEIG  171 (211)
T ss_dssp             ----------------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHC
T ss_pred             ----------------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhC
Confidence                            246788889998889999999999988885

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}

Probab=98.80  E-value=6.8e-08  Score=86.29  Aligned_cols=153  Identities=15%  Similarity=0.140  Sum_probs=123.5

Q ss_pred             HHHHHHHHHhhCCCCCHHHHHHHHHHHHhccCCCCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHHHH
Q 015951          126 QLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQK  205 (397)
Q Consensus       126 ~lmk~~i~~L~~~~~s~e~k~~AL~~L~~Lve~iDnA~~~~~lGGl~~Li~lL~s~~~~ir~~Aa~vLg~~aqNNp~~Q~  205 (397)
                      +.+..+++.+.++  ++..+..|+..|..+-.          -+.++.|+.+|+++++.+|..|+++|+.+..  +    
T Consensus        45 ~~~~~L~~~l~~~--~~~vr~~a~~~L~~~~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~--~----  106 (201)
T 3ltj_A           45 RAVEPLIKALKDE--DAWVRRAAADALGQIGD----------ERAVEPLIKALKDEDGWVRQSAAVALGQIGD--E----  106 (201)
T ss_dssp             GGHHHHHHHTTCS--SHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC--G----
T ss_pred             hHHHHHHHHHcCC--CHHHHHHHHHHHHhhCC----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc--H----
Confidence            3456666777654  57788888888876532          2578999999999999999999999999853  2    


Q ss_pred             HHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhc
Q 015951          206 QVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKC  285 (397)
Q Consensus       206 ~vl~~g~lp~Ll~LL~s~~~~v~~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klr~kA~~lL~~L~~~  285 (397)
                           .+++.|+.++.+++..+|..|+++|+.+-  .         ...++.|..++.++  +..+|..|+.+|..+-. 
T Consensus       107 -----~~~~~L~~~l~d~~~~vr~~a~~aL~~~~--~---------~~~~~~L~~~l~d~--~~~vr~~A~~aL~~~~~-  167 (201)
T 3ltj_A          107 -----RAVEPLIKALKDEDWFVRIAAAFALGEIG--D---------ERAVEPLIKALKDE--DGWVRQSAADALGEIGG-  167 (201)
T ss_dssp             -----GGHHHHHHHTTCSSHHHHHHHHHHHHHHT--C---------GGGHHHHHHHTTCS--SHHHHHHHHHHHHHHCS-
T ss_pred             -----HHHHHHHHHHcCCCHHHHHHHHHHHHHhC--C---------HHHHHHHHHHHcCC--CHHHHHHHHHHHHHhCc-
Confidence                 48999999999989999999999999873  1         34678889999876  56799999999998842 


Q ss_pred             hhccCCCCcchhHHhCCcHHHHHHhccCCChHHHHHHHHHHHHHh
Q 015951          286 QLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLL  330 (397)
Q Consensus       286 ~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~dv~E~aL~aL~~L~  330 (397)
                                     ...++.|..++..+++.+++.|..+|..+.
T Consensus       168 ---------------~~~~~~L~~~l~d~~~~vr~~A~~aL~~l~  197 (201)
T 3ltj_A          168 ---------------ERVRAAMEKLAETGTGFARKVAVNYLETHK  197 (201)
T ss_dssp             ---------------HHHHHHHHHHHHHCCHHHHHHHHHHHHHCC
T ss_pred             ---------------hhHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence                           236778888888899999999999888764

>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A

Probab=98.80  E-value=2.1e-08  Score=107.60  Aligned_cols=192  Identities=15%  Similarity=0.086  Sum_probs=146.0

Q ss_pred             HHHHhhCCCCCHHHHHHHHHHHHhccCCCCchhHHHhcCCHHHHH-HhcCCCCHHHHHHHHHHHHHHhcC-ChHHHHHHH
Q 015951          131 AIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLV-GQLNHPDTDIRKISAWILGKASQN-NPLVQKQVL  208 (397)
Q Consensus       131 ~i~~L~~~~~s~e~k~~AL~~L~~Lve~iDnA~~~~~lGGl~~Li-~lL~s~~~~ir~~Aa~vLg~~aqN-Np~~Q~~vl  208 (397)
                      .++.|.++  ++++|..|+..|.+++++..+...+.+.|++.+++ .+|..++.+||..|+++|++++.. .+.+...++
T Consensus        39 ll~~L~S~--~~~~r~~A~~al~~l~~~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d~~~~l~  116 (684)
T 4gmo_A           39 VLKDLKSP--DAKSRTTAAGAIANIVQDAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEADFCVHLY  116 (684)
T ss_dssp             HHHHHSSS--CCSHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred             HHHHcCCC--CHHHHHHHHHHHHHHHcCcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCchHHHHHH
Confidence            45566655  46789999999999999888888899999999877 578999999999999999999975 688999999


Q ss_pred             HcCcHHHHHHhhcCCCH---------------------HHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcC-CC
Q 015951          209 ELGALSKLMKMVKSSFV---------------------EEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGN-SS  266 (397)
Q Consensus       209 ~~g~lp~Ll~LL~s~~~---------------------~v~~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s-~~  266 (397)
                      ..|++++|+.++.+...                     .+...++++|.+++.++..+...+...++++.|+..|.+ ..
T Consensus       117 ~~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~~~~~l~~l~~~L~~~~~  196 (684)
T 4gmo_A          117 RLDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAVATKQTILRLLFRLISADI  196 (684)
T ss_dssp             HTTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTCHHHHHHHHHHHHHCC
T ss_pred             HcChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhcccHHHHHHHHHhcCC
Confidence            99999999999853211                     123467788888888888888899999999999999853 22


Q ss_pred             ccHHHHHHHHHHHHHHhhchhccCCCCcchhHHhCCcHH---HHHHhccCCChHHHHHHHHHHHHHh
Q 015951          267 FEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLK---SVVDLTASADLDLQEKALAAIKNLL  330 (397)
Q Consensus       267 ~d~klr~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~---~Lv~lL~~~d~dv~E~aL~aL~~L~  330 (397)
                      ....++..|+.+|+.|+.     .++.....+.+.+...   .+..+.+..+ ..+--+...|.++.
T Consensus       197 ~~~~v~~~a~~~L~~ls~-----dn~~~~~~i~~~~~~~~~~~ll~~~~~~~-~~~~la~giL~Ni~  257 (684)
T 4gmo_A          197 APQDIYEEAISCLTTLSE-----DNLKVGQAITDDQETHVYDVLLKLATGTD-PRAVMACGVLHNVF  257 (684)
T ss_dssp             SCHHHHHHHHHHHHHHHT-----TCHHHHHHHHTCCSSCHHHHHHHHHHSSC-TTHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHHHhc-----cCHHHHHHHHhcchHHHHHHHHHHhcCCc-HHHHHHHHHHHhHh
Confidence            356789999999999985     3455666676665432   3333333333 33445556666653

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}

Probab=98.77  E-value=8.3e-08  Score=86.40  Aligned_cols=156  Identities=15%  Similarity=0.138  Sum_probs=123.2

Q ss_pred             HHHHHHHHHhhCCCCCHHHHHHHHHHHHhccCCCCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHHHH
Q 015951          126 QLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQK  205 (397)
Q Consensus       126 ~lmk~~i~~L~~~~~s~e~k~~AL~~L~~Lve~iDnA~~~~~lGGl~~Li~lL~s~~~~ir~~Aa~vLg~~aqNNp~~Q~  205 (397)
                      +.+..+++.+.++  ++..+..|+..|..+-.          -+.++.|+.+|+++++.+|..|+++|+.+..       
T Consensus        50 ~~~~~L~~~l~~~--~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~-------  110 (211)
T 3ltm_A           50 RAVEPLIKALKDE--DAWVRRAAADALGQIGD----------ERAVEPLIKALKDEDGWVRQSAAVALGQIGD-------  110 (211)
T ss_dssp             GGHHHHHHHTTCS--CHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-------
T ss_pred             cHHHHHHHHHcCC--CHHHHHHHHHHHHhhCC----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-------
Confidence            3455566777654  67788888888876532          3578999999999999999999999999853       


Q ss_pred             HHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhc
Q 015951          206 QVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKC  285 (397)
Q Consensus       206 ~vl~~g~lp~Ll~LL~s~~~~v~~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klr~kA~~lL~~L~~~  285 (397)
                          .+.++.|+.++.+++..+|..|+++|+.+-  .         ...++.|..++.++  +..+|..|+.+|..+.. 
T Consensus       111 ----~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~--~---------~~~~~~L~~~l~d~--~~~vr~~a~~aL~~~~~-  172 (211)
T 3ltm_A          111 ----ERAVEPLIKALKDEDWFVRIAAAFALGEIG--D---------ERAVEPLIKALKDE--DGWVRQSAADALGEIGG-  172 (211)
T ss_dssp             ----GGGHHHHHHHTTCSSHHHHHHHHHHHHHHC--C---------GGGHHHHHHHTTCS--SHHHHHHHHHHHHHHCS-
T ss_pred             ----HHHHHHHHHHHhCCCHHHHHHHHHHHHHcC--C---------HHHHHHHHHHHcCC--CHHHHHHHHHHHHHhCc-
Confidence                258999999999999999999999999882  2         24678889999876  56799999999998842 


Q ss_pred             hhccCCCCcchhHHhCCcHHHHHHhccCCChHHHHHHHHHHHHHhcCC
Q 015951          286 QLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLR  333 (397)
Q Consensus       286 ~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~dv~E~aL~aL~~L~~~~  333 (397)
                                     ...++.|..+++.+++.++..|..+|..+....
T Consensus       173 ---------------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~~~  205 (211)
T 3ltm_A          173 ---------------ERVRAAMEKLAETGTGFARKVAVNYLETHKSFN  205 (211)
T ss_dssp             ---------------HHHHHHHHHHHHHCCHHHHHHHHHHHHC-----
T ss_pred             ---------------hhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCC
Confidence                           246778888898899999999999998887654

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16

Probab=98.71  E-value=6.5e-07  Score=84.05  Aligned_cols=121  Identities=10%  Similarity=0.079  Sum_probs=79.6

Q ss_pred             cCCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHH
Q 015951          178 LNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLM  257 (397)
Q Consensus       178 L~s~~~~ir~~Aa~vLg~~aqNNp~~Q~~vl~~g~lp~Ll~LL~s~~~~v~~kAl~ALS~LiR~~~~~~~~f~~~gGi~~  257 (397)
                      ++++++.+|..|+++||.+...+|....     .++|.|+.++.+++..+|..|+++|+.+..           ...++.
T Consensus       100 ~~d~~~~vr~~a~~aL~~l~~~~~~~~~-----~~~~~L~~~l~d~~~~vR~~a~~aL~~~~~-----------~~~~~~  163 (280)
T 1oyz_A          100 LNDKSACVRATAIESTAQRCKKNPIYSP-----KIVEQSQITAFDKSTNVRRATAFAISVIND-----------KATIPL  163 (280)
T ss_dssp             HHCSCHHHHHHHHHHHHHHHHHCGGGHH-----HHHHHHHHHTTCSCHHHHHHHHHHHHTC--------------CCHHH
T ss_pred             hcCCCHHHHHHHHHHHHHHhccCCcccH-----HHHHHHHHHhhCCCHHHHHHHHHHHHhcCC-----------HHHHHH
Confidence            3556666777777777766654443222     346777777777777777777777775521           246777


Q ss_pred             HHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHHhCCcHHHHHHhccCCChHHHHHHHHHHHHHh
Q 015951          258 LQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLL  330 (397)
Q Consensus       258 L~~lL~s~~~d~klr~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~dv~E~aL~aL~~L~  330 (397)
                      |..++.++  +..+|..|+++|..+..      +        ....++.++.+|..+++.++..|+.+|..+.
T Consensus       164 L~~~l~d~--~~~vr~~a~~aL~~~~~------~--------~~~~~~~L~~~l~d~~~~vR~~A~~aL~~~~  220 (280)
T 1oyz_A          164 LINLLKDP--NGDVRNWAAFAININKY------D--------NSDIRDCFVEMLQDKNEEVRIEAIIGLSYRK  220 (280)
T ss_dssp             HHHHHTCS--SHHHHHHHHHHHHHHTC------C--------CHHHHHHHHHHTTCSCHHHHHHHHHHHHHTT
T ss_pred             HHHHHcCC--CHHHHHHHHHHHHhhcc------C--------cHHHHHHHHHHhcCCCHHHHHHHHHHHHHhC
Confidence            77777765  45577788888777631      1        1245677888888888888888888887775

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16

Probab=98.63  E-value=1e-06  Score=82.71  Aligned_cols=146  Identities=10%  Similarity=0.026  Sum_probs=108.6

Q ss_pred             CHHHHHHHHHHHHhccCCCCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCcHHHHHHhh
Q 015951          141 SLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMV  220 (397)
Q Consensus       141 s~e~k~~AL~~L~~Lve~iDnA~~~~~lGGl~~Li~lL~s~~~~ir~~Aa~vLg~~aqNNp~~Q~~vl~~g~lp~Ll~LL  220 (397)
                      ++..+..|+..|..+......    ..-..++.|+.+|+++++.+|..|+++||.+..           .+++|.|+.++
T Consensus       104 ~~~vr~~a~~aL~~l~~~~~~----~~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~~-----------~~~~~~L~~~l  168 (280)
T 1oyz_A          104 SACVRATAIESTAQRCKKNPI----YSPKIVEQSQITAFDKSTNVRRATAFAISVIND-----------KATIPLLINLL  168 (280)
T ss_dssp             CHHHHHHHHHHHHHHHHHCGG----GHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC--------------CCHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHhccCCc----ccHHHHHHHHHHhhCCCHHHHHHHHHHHHhcCC-----------HHHHHHHHHHH
Confidence            455666666666654321100    012357888889999999999999999998753           25899999999


Q ss_pred             cCCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHHh
Q 015951          221 KSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRD  300 (397)
Q Consensus       221 ~s~~~~v~~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klr~kA~~lL~~L~~~~l~~~~~~~~~~l~~  300 (397)
                      .+++..+|..|+++|+.+-.+.+         ..++.|..++.++  +..+|..|++.|..+..                
T Consensus       169 ~d~~~~vr~~a~~aL~~~~~~~~---------~~~~~L~~~l~d~--~~~vR~~A~~aL~~~~~----------------  221 (280)
T 1oyz_A          169 KDPNGDVRNWAAFAININKYDNS---------DIRDCFVEMLQDK--NEEVRIEAIIGLSYRKD----------------  221 (280)
T ss_dssp             TCSSHHHHHHHHHHHHHHTCCCH---------HHHHHHHHHTTCS--CHHHHHHHHHHHHHTTC----------------
T ss_pred             cCCCHHHHHHHHHHHHhhccCcH---------HHHHHHHHHhcCC--CHHHHHHHHHHHHHhCC----------------
Confidence            99999999999999998743222         3467889999876  56789999999988742                


Q ss_pred             CCcHHHHHHhccCCChHHHHHHHHHHHHHh
Q 015951          301 RFFLKSVVDLTASADLDLQEKALAAIKNLL  330 (397)
Q Consensus       301 ~g~v~~Lv~lL~~~d~dv~E~aL~aL~~L~  330 (397)
                      ...++.|+.++..++  ++..++.+|..+.
T Consensus       222 ~~~~~~L~~~l~d~~--vr~~a~~aL~~i~  249 (280)
T 1oyz_A          222 KRVLSVLCDELKKNT--VYDDIIEAAGELG  249 (280)
T ss_dssp             GGGHHHHHHHHTSSS--CCHHHHHHHHHHC
T ss_pred             HhhHHHHHHHhcCcc--HHHHHHHHHHhcC
Confidence            357888889888755  8888888888775

>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}

Probab=98.51  E-value=5.1e-06  Score=81.47  Aligned_cols=193  Identities=17%  Similarity=0.114  Sum_probs=148.1

Q ss_pred             CHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHh-ccCCCCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCh
Q 015951          123 SDAQLIQIAIDDLNNSTLSLEDSQRALQELLI-LVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNP  201 (397)
Q Consensus       123 ~d~~lmk~~i~~L~~~~~s~e~k~~AL~~L~~-Lve~iDnA~~~~~lGGl~~Li~lL~s~~~~ir~~Aa~vLg~~aqNNp  201 (397)
                      ++......+++.|.+.  +.+++..+|..|.. +-++.+.|..|+..+|+..|+......+.+.+.++..+++.+.-.+.
T Consensus       115 sps~ra~~iiekL~~~--~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~~~gN~q~Y~L~AL~~LM~~v~  192 (339)
T 3dad_A          115 QLSVRVNAILEKLYSS--SGPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAAADHNYQSYILRALGQLMLFVD  192 (339)
T ss_dssp             CHHHHHHHHHHHHHHC--CHHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTTSCHHHHHHHHHHHHHHTTSHH
T ss_pred             CcHHHHHHHHHHHhcC--CcHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHhcChHHHHHHHHHHHHHHhccc
Confidence            4556778888999865  57889999999998 55899999999999999999999999999999999999999996533


Q ss_pred             HHHHHHH-HcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHHHhc-------Cc---HHHHHHhhcC-CCccH
Q 015951          202 LVQKQVL-ELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVE-------AG---DLMLQDILGN-SSFEI  269 (397)
Q Consensus       202 ~~Q~~vl-~~g~lp~Ll~LL~s~~~~v~~kAl~ALS~LiR~~~~~~~~f~~~-------gG---i~~L~~lL~s-~~~d~  269 (397)
                       --+.++ ....|..|..++.+....+...|+.-|-+++-..+.+...+.++       .|   |+.|+.+|++ ++.|.
T Consensus       193 -Gm~gvvs~~~fI~~lyslv~s~~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~  271 (339)
T 3dad_A          193 -GMLGVVAHSDTIQWLYTLCASLSRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADP  271 (339)
T ss_dssp             -HHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCH
T ss_pred             -cccchhCCHHHHHHHHHHHcCccHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCH
Confidence             343444 44678999999998777888888888888887766555554432       23   8899999972 12477


Q ss_pred             HHHHHHHHHHHHHhhchhccCCC-----CcchhHHhCCcHHHHHHhccCC--ChHHHHHH
Q 015951          270 RLHRKAVSLVGDLAKCQLENMHK-----VEPPLFRDRFFLKSVVDLTASA--DLDLQEKA  322 (397)
Q Consensus       270 klr~kA~~lL~~L~~~~l~~~~~-----~~~~~l~~~g~v~~Lv~lL~~~--d~dv~E~a  322 (397)
                      .++.+|+.+|..+...    .++     +....+.+.|+-..+..+++..  |++++++.
T Consensus       272 elq~~amtLIN~lL~~----apd~d~~~di~d~Le~~gi~~~i~r~l~~~~~~~~l~~Ql  327 (339)
T 3dad_A          272 ELLVYTVTLINKTLAA----LPDQDSFYDVTDALEQQGMEALVQRHLGTAGTDVDLRTQL  327 (339)
T ss_dssp             HHHHHHHHHHHHHHHH----CSSHHHHHHHHHHHHHTTHHHHHHHHHSCTTSCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhc----CCChhHHHHHHHHHHHccHHHHHHHHHhccCCCHHHHHHH
Confidence            8999999999999863    221     2344566677666677777664  66777664

>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}

Probab=98.39  E-value=1.9e-05  Score=73.89  Aligned_cols=186  Identities=13%  Similarity=0.176  Sum_probs=145.8

Q ss_pred             HHHHHHHHhhCCCCCHHHHHHHHHHHHhccCCCCchhHHHhc-CCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHHHH
Q 015951          127 LIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKL-GGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQK  205 (397)
Q Consensus       127 lmk~~i~~L~~~~~s~e~k~~AL~~L~~Lve~iDnA~~~~~l-GGl~~Li~lL~s~~~~ir~~Aa~vLg~~aqNNp~~Q~  205 (397)
                      ....++..|.+.  +..-+.++|..|++++...|-.-..... .+++.++.++.+.+..+-..|..||+++..|.|-.-+
T Consensus        34 ~l~~L~~LL~dk--D~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL~~~  111 (265)
T 3b2a_A           34 ALFLILELAGED--DETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQENEKVTIKALRALGYLVKDVPMGSK  111 (265)
T ss_dssp             HHHHHHHHTTSS--CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCBCHH
T ss_pred             HHHHHHHHHhcc--chHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCCCCHH
Confidence            445566666443  6778999999999999887655444443 6899999999999999999999999999999998888


Q ss_pred             HHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhc
Q 015951          206 QVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKC  285 (397)
Q Consensus       206 ~vl~~g~lp~Ll~LL~s~~~~v~~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klr~kA~~lL~~L~~~  285 (397)
                      .+..  .+..|..++.+.++-.+..|.-.++.+ +  +....    -.-+..|.+++.|+  +.++|.-+..++.+++..
T Consensus       112 ~y~K--l~~aL~dlik~~~~il~~eaae~Lgkl-k--v~~~~----~~V~~~l~sLl~Sk--d~~vK~agl~~L~eia~~  180 (265)
T 3b2a_A          112 TFLK--AAKTLVSLLESPDDMMRIETIDVLSKL-Q--PLEDS----KLVRTYINELVVSP--DLYTKVAGFCLFLNMLNS  180 (265)
T ss_dssp             HHHH--HHHHHHHHTTSCCHHHHHHHHHHHHHC-C--BSCCC----HHHHHHHHHHHTCS--SHHHHHHHHHHHHHHGGG
T ss_pred             HHHH--HHHHHHHHhcCCCchHHHHHHHHhCcC-C--cccch----HHHHHHHHHHHhCC--ChhHHHHHHHHHHHhhcc
Confidence            7776  578889999988888888899999887 2  22101    13456788889765  788999999999999863


Q ss_pred             hhccCCCCcchhHHhCCcHHHHHHhccCCChHHHHHHHHHHHHHhcCC
Q 015951          286 QLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLR  333 (397)
Q Consensus       286 ~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~dv~E~aL~aL~~L~~~~  333 (397)
                         ..++....     +++.-+-++|++.|+.++|.|+.++..+++.+
T Consensus       181 ---S~D~~i~~-----~I~~eI~elL~~eD~~l~e~aLd~Le~ils~p  220 (265)
T 3b2a_A          181 ---SADSGHLT-----LILDEIPSLLQNDNEFIVELALDVLEKALSFP  220 (265)
T ss_dssp             ---CSSCCCGG-----GTTTTHHHHHTCSCHHHHHHHHHHHHHHTTSC
T ss_pred             ---cCCHHHHH-----HHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCc
Confidence               23344333     45566788999999999999999999999763

>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}

Probab=98.39  E-value=5.4e-06  Score=76.55  Aligned_cols=181  Identities=11%  Similarity=0.125  Sum_probs=131.1

Q ss_pred             HHHHhhCCCCCHHHHHHHHHHHHhccCC-CCc-hhHHHhcCCHHHHHHhc-CCCCHHHHHHHHHHHHHHhcCCh-HHHHH
Q 015951          131 AIDDLNNSTLSLEDSQRALQELLILVEP-IDN-ANDLSKLGGLSVLVGQL-NHPDTDIRKISAWILGKASQNNP-LVQKQ  206 (397)
Q Consensus       131 ~i~~L~~~~~s~e~k~~AL~~L~~Lve~-iDn-A~~~~~lGGl~~Li~lL-~s~~~~ir~~Aa~vLg~~aqNNp-~~Q~~  206 (397)
                      ..+.+.+  .+-..|..|+..|..+++. .+. ..++.+  .++.|...| +.++..+|..|+.+++.++..-. .....
T Consensus        20 l~~~l~s--~~w~~R~~a~~~L~~l~~~~~~~~~~~~~~--i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~~~   95 (242)
T 2qk2_A           20 FYDKLEE--KKWTLRKESLEVLEKLLTDHPKLENGEYGA--LVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSNY   95 (242)
T ss_dssp             HHHHHTC--SSHHHHHHHHHHHHHHHHHCSSBCCCCCHH--HHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGHHH
T ss_pred             HHhhhcc--CCHHHHHHHHHHHHHHHccCCCCCCCCHHH--HHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence            3344543  3677899999999988865 221 122322  366677888 48999999999999999995311 12121


Q ss_pred             HHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhch
Q 015951          207 VLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQ  286 (397)
Q Consensus       207 vl~~g~lp~Ll~LL~s~~~~v~~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klr~kA~~lL~~L~~~~  286 (397)
                      +  ...+|.|+..+.+.+..+|..|..||.+++...+  ...     -++.|...++++  +.++|..++.+|..++.. 
T Consensus        96 ~--~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~--~~~-----ll~~l~~~l~~~--~~~vr~~~l~~l~~~l~~-  163 (242)
T 2qk2_A           96 A--SACVPSLLEKFKEKKPNVVTALREAIDAIYASTS--LEA-----QQESIVESLSNK--NPSVKSETALFIARALTR-  163 (242)
T ss_dssp             H--HHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSC--HHH-----HHHHHHHHTTCS--CHHHHHHHHHHHHHHHTT-
T ss_pred             H--HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCC--HHH-----HHHHHHHHHcCC--ChHHHHHHHHHHHHHHHH-
Confidence            1  2379999999999899999999999999987543  122     355677778876  568999999999997642 


Q ss_pred             hccCCCC--cchhHHhCCcHHHHHHhccCCChHHHHHHHHHHHHHhcC
Q 015951          287 LENMHKV--EPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQL  332 (397)
Q Consensus       287 l~~~~~~--~~~~l~~~g~v~~Lv~lL~~~d~dv~E~aL~aL~~L~~~  332 (397)
                         ..+.  ....+  ..+++.++.+|...+..+|..|..++..+...
T Consensus       164 ---~~~~~~~~~~l--~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~~  206 (242)
T 2qk2_A          164 ---TQPTALNKKLL--KLLTTSLVKTLNEPDPTVRDSSAEALGTLIKL  206 (242)
T ss_dssp             ---CCGGGCCHHHH--HHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHH
T ss_pred             ---cCCCCccHHHH--HHHHHHHHHHhcCCChHHHHHHHHHHHHHHHH
Confidence               2222  22333  36889999999999999999999999998864

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*

Probab=98.32  E-value=1.6e-06  Score=94.26  Aligned_cols=175  Identities=14%  Similarity=0.072  Sum_probs=122.4

Q ss_pred             HHHHHHHHHhccCCCCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCcHHHHHHhhcCCC
Q 015951          145 SQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSF  224 (397)
Q Consensus       145 k~~AL~~L~~Lve~iDnA~~~~~lGGl~~Li~lL~s~~~~ir~~Aa~vLg~~aqNNp~~Q~~vl~~g~lp~Ll~LL~s~~  224 (397)
                      +..|...|..+++...  ..+.. ..++.+.++|+++++.+|..|+++||.++.+.+..-... -.+.+|.|+.++++++
T Consensus       338 r~~a~~~L~~la~~~~--~~~~~-~l~~~l~~~l~~~~~~~R~aa~~alg~i~~~~~~~~~~~-l~~~l~~l~~~l~d~~  413 (852)
T 4fdd_A          338 RKCSAAALDVLANVYR--DELLP-HILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPY-LPELIPHLIQCLSDKK  413 (852)
T ss_dssp             HHHHHHHHHHHHHHHG--GGGHH-HHHHHHHHHHTCSSHHHHHHHHHHHHHTTTTTHHHHGGG-HHHHHHHHHHHTTCSS
T ss_pred             HHHHHHHHHHHHHhcc--HHHHH-HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcchHHHHHH-HHHHHHHHHHHcCCCC
Confidence            4455555555443322  12221 346666778889999999999999999998876532222 2467999999999999


Q ss_pred             HHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHHhCCcH
Q 015951          225 VEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFL  304 (397)
Q Consensus       225 ~~v~~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klr~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~v  304 (397)
                      +.+|..|+++|+.+....+.....-+-.+-++.|...+.++  +.++|..|++++.+++..    ..+...+.+  ..++
T Consensus       414 ~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~L~~~L~d~--~~~vr~~a~~aL~~l~~~----~~~~l~~~l--~~ll  485 (852)
T 4fdd_A          414 ALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDS--NKRVQEAACSAFATLEEE----ACTELVPYL--AYIL  485 (852)
T ss_dssp             HHHHHHHHHHHHHTHHHHHHSCTTTTHHHHHHHHHHHHTCS--SHHHHHHHHHHHHHHHHH----HGGGGGGGH--HHHH
T ss_pred             HHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhCC--CHHHHHHHHHHHHHHHHH----hhHhhHhHH--HHHH
Confidence            99999999999998865433111111235677888888775  568999999999999964    233344433  4677


Q ss_pred             HHHHHhccCCChHHHHHHHHHHHHHhc
Q 015951          305 KSVVDLTASADLDLQEKALAAIKNLLQ  331 (397)
Q Consensus       305 ~~Lv~lL~~~d~dv~E~aL~aL~~L~~  331 (397)
                      +.+..+++..+......++.++..++.
T Consensus       486 ~~L~~~l~~~~~~~~~~~~~ai~~l~~  512 (852)
T 4fdd_A          486 DTLVFAFSKYQHKNLLILYDAIGTLAD  512 (852)
T ss_dssp             HHHHHHHHHCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhChHHHHHHHHHHHHHHH
Confidence            778888877777777777788887763

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A

Probab=98.31  E-value=7.8e-06  Score=83.51  Aligned_cols=134  Identities=10%  Similarity=0.007  Sum_probs=102.2

Q ss_pred             CHHHHHHHHHHHHhccCCCCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCcHHHHHHhh
Q 015951          141 SLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMV  220 (397)
Q Consensus       141 s~e~k~~AL~~L~~Lve~iDnA~~~~~lGGl~~Li~lL~s~~~~ir~~Aa~vLg~~aqNNp~~Q~~vl~~g~lp~Ll~LL  220 (397)
                      +++.+..|++.|..+++.....  ...-..+|.+..+++++++.+|..|+.+++.++...+.-   ......+|.+.+++
T Consensus       177 ~~~VR~~a~~~l~~l~~~~~~~--~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~---~~~~~~~~~l~~~~  251 (588)
T 1b3u_A          177 TPMVRRAAASKLGEFAKVLELD--NVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQE---DLEALVMPTLRQAA  251 (588)
T ss_dssp             CHHHHHHHHHHHHHHHHTSCHH--HHHHTHHHHHHHHHTCSCHHHHTTHHHHHHHHHHHSCHH---HHHHHTHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHhcHH--hHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCHH---HHHHHHHHHHHHHc
Confidence            6778888899888887765432  223356778888899999999999999999998765431   22334789999999


Q ss_pred             cCCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhh
Q 015951          221 KSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAK  284 (397)
Q Consensus       221 ~s~~~~v~~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klr~kA~~lL~~L~~  284 (397)
                      .+++..+|..|+.+|+.+....++   ..+...-++.+..+++++  +..+|..|+..+..++.
T Consensus       252 ~d~~~~vR~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~d~--~~~vr~~a~~~l~~~~~  310 (588)
T 1b3u_A          252 EDKSWRVRYMVADKFTELQKAVGP---EITKTDLVPAFQNLMKDC--EAEVRAAASHKVKEFCE  310 (588)
T ss_dssp             TCSSHHHHHHHHHTHHHHHHHHCH---HHHHHTHHHHHHHHHTCS--SHHHHHHHHHHHHHHHH
T ss_pred             cCCCHHHHHHHHHHHHHHHHHhCc---ccchhHHHHHHHHHhCCC--cHHHHHHHHHHHHHHHH
Confidence            888888999999999998865322   123345688889999876  56789999999999886

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A

Probab=98.30  E-value=4.9e-06  Score=85.03  Aligned_cols=172  Identities=11%  Similarity=0.017  Sum_probs=122.4

Q ss_pred             CHHHHHHHHHHHHhccCCCCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCcHHHHHHhh
Q 015951          141 SLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMV  220 (397)
Q Consensus       141 s~e~k~~AL~~L~~Lve~iDnA~~~~~lGGl~~Li~lL~s~~~~ir~~Aa~vLg~~aqNNp~~Q~~vl~~g~lp~Ll~LL  220 (397)
                      +...+..+++.|..++......  +..-..++.++.+|.+++..+|..|+.+++.++.....   .+.....+|.|+.++
T Consensus       415 ~~~vr~~~~~~l~~l~~~~~~~--~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~---~~~~~~llp~l~~~~  489 (588)
T 1b3u_A          415 KWRVRLAIIEYMPLLAGQLGVE--FFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGK---EWAHATIIPKVLAMS  489 (588)
T ss_dssp             SHHHHHHHHHHHHHHHHHHCGG--GCCHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCH---HHHHHHTHHHHHHTT
T ss_pred             CchHHHHHHHHHHHHHHHcCHH--HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCc---hhHHHHHHHHHHHHh
Confidence            3445666666666554322211  11112467778889999999999999999999875322   122345789999998


Q ss_pred             cCCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHHh
Q 015951          221 KSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRD  300 (397)
Q Consensus       221 ~s~~~~v~~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klr~kA~~lL~~L~~~~l~~~~~~~~~~l~~  300 (397)
                      .+++..+|..++++++.++.....   .++...-++.|..++.++  +..+|..+++++..++..    .+    ..+..
T Consensus       490 ~~~~~~~R~~a~~~l~~l~~~~~~---~~~~~~~~~~l~~~l~d~--~~~Vr~~a~~~l~~l~~~----~~----~~~~~  556 (588)
T 1b3u_A          490 GDPNYLHRMTTLFCINVLSEVCGQ---DITTKHMLPTVLRMAGDP--VANVRFNVAKSLQKIGPI----LD----NSTLQ  556 (588)
T ss_dssp             TCSCHHHHHHHHHHHHHHHHHHHH---HHHHHHTHHHHHHGGGCS--CHHHHHHHHHHHHHHGGG----SC----HHHHH
T ss_pred             hCCCHHHHHHHHHHHHHHHHhcCH---HHHHHHHHHHHHhhCCCC--CchHHHHHHHHHHHHHHH----hc----hhhhH
Confidence            888888999999999999875432   233456788888988876  556899999999999852    11    22334


Q ss_pred             CCcHHHHHHhccCCChHHHHHHHHHHHHHh
Q 015951          301 RFFLKSVVDLTASADLDLQEKALAAIKNLL  330 (397)
Q Consensus       301 ~g~v~~Lv~lL~~~d~dv~E~aL~aL~~L~  330 (397)
                      ..+++.+..++...|.++++.|..|+..+.
T Consensus       557 ~~~~p~l~~l~~d~d~~vr~~a~~al~~l~  586 (588)
T 1b3u_A          557 SEVKPILEKLTQDQDVDVKYFAQEALTVLS  586 (588)
T ss_dssp             HHHHHHHHHHTTCSSHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHcCCCchhHHHHHHHHHHHhh
Confidence            567777778778889999999999988764

>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16

Probab=98.30  E-value=6.3e-08  Score=81.60  Aligned_cols=119  Identities=10%  Similarity=0.066  Sum_probs=87.6

Q ss_pred             CCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHH
Q 015951          169 GGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEM  248 (397)
Q Consensus       169 GGl~~Li~lL~s~~~~ir~~Aa~vLg~~aqNNp~~Q~~vl~~g~lp~Ll~LL~s~~~~v~~kAl~ALS~LiR~~~~~~~~  248 (397)
                      ..++.++.+|+++++.+|..|+++|+.+..  +          .++.|+.+|++++..+|..|+++|+.+-  .+     
T Consensus        12 ~~~~~l~~~L~~~~~~vR~~A~~~L~~~~~--~----------~~~~L~~~L~d~~~~vR~~A~~aL~~~~--~~-----   72 (131)
T 1te4_A           12 SGLVPRGSHMADENKWVRRDVSTALSRMGD--E----------AFEPLLESLSNEDWRIRGAAAWIIGNFQ--DE-----   72 (131)
T ss_dssp             ---------CCSSCCCSSSSCCSSTTSCSS--T----------THHHHHHGGGCSCHHHHHHHHHHHGGGC--SH-----
T ss_pred             ccHHHHHHHhcCCCHHHHHHHHHHHHHhCc--h----------HHHHHHHHHcCCCHHHHHHHHHHHHhcC--CH-----
Confidence            467788899999999999999999987642  1          3689999999888899999999999863  11     


Q ss_pred             HHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHHhCCcHHHHHHhccCCChHHHHHHHHHHHH
Q 015951          249 FYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKN  328 (397)
Q Consensus       249 f~~~gGi~~L~~lL~s~~~d~klr~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~dv~E~aL~aL~~  328 (397)
                          ..++.|..+|.++  +..+|..|+++|..+..                ...++.|..+++.+|..++..|..+|..
T Consensus        73 ----~a~~~L~~~L~d~--~~~VR~~A~~aL~~~~~----------------~~a~~~L~~~l~d~~~~vr~~A~~aL~~  130 (131)
T 1te4_A           73 ----RAVEPLIKLLEDD--SGFVRSGAARSLEQIGG----------------ERVRAAMEKLAETGTGFARKVAVNYLET  130 (131)
T ss_dssp             ----HHHHHHHHHHHHC--CTHHHHHHHHHHHHHCS----------------HHHHHHHHHHTTSCCTHHHHHHHHHGGG
T ss_pred             ----HHHHHHHHHHcCC--CHHHHHHHHHHHHHhCc----------------HHHHHHHHHHHhCCCHHHHHHHHHHHHh
Confidence                2477888888765  56789999999988742                2357788888988899999999887754

>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B

Probab=98.27  E-value=3e-05  Score=81.33  Aligned_cols=166  Identities=16%  Similarity=0.157  Sum_probs=128.3

Q ss_pred             CHHHHHHHHHHHHhcc-CCCCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCcHHHHHHh
Q 015951          141 SLEDSQRALQELLILV-EPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKM  219 (397)
Q Consensus       141 s~e~k~~AL~~L~~Lv-e~iDnA~~~~~lGGl~~Li~lL~s~~~~ir~~Aa~vLg~~aqNNp~~Q~~vl~~g~lp~Ll~L  219 (397)
                      +.+.|..++..+-++. ...|.      ..+++.+++++.+++..+|..+...+..++..+|+..     .-+++.|.+-
T Consensus        26 ~~~~k~~~~~kli~~~~~G~d~------~~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~~e~~-----~l~~n~l~kd   94 (591)
T 2vgl_B           26 KKEKRKEAVKKVIAAMTVGKDV------SSLFPDVVNCMQTDNLELKKLVYLYLMNYAKSQPDMA-----IMAVNSFVKD   94 (591)
T ss_dssp             CHHHHHHHHHHHHHHHHTTCCC------GGGHHHHHHTTSSSCHHHHHHHHHHHHHHHHHSHHHH-----HTTHHHHGGG
T ss_pred             CHHHHHHHHHHHHHHHHCCCCh------HHHHHHHHHHhCCCCHHHHHHHHHHHHHHcccCchHH-----HHHHHHHHHH
Confidence            3566777766666543 23332      2378889999999999999999999999988766543     2356788888


Q ss_pred             hcCCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHH
Q 015951          220 VKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFR  299 (397)
Q Consensus       220 L~s~~~~v~~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klr~kA~~lL~~L~~~~l~~~~~~~~~~l~  299 (397)
                      +.++++.+|..|+.+|+++.  .+.....+     ++.+..++.++  ++.+|.+|+.++..++..     +++.   +.
T Consensus        95 L~~~n~~ir~~AL~~L~~i~--~~~~~~~l-----~~~l~~~L~d~--~~~VRk~A~~al~~i~~~-----~p~~---~~  157 (591)
T 2vgl_B           95 CEDPNPLIRALAVRTMGCIR--VDKITEYL-----CEPLRKCLKDE--DPYVRKTAAVCVAKLHDI-----NAQM---VE  157 (591)
T ss_dssp             SSSSSHHHHHHHHHHHHTCC--SGGGHHHH-----HHHHHHHSSCS--CHHHHHHHHHHHHHHHHS-----SCCC---HH
T ss_pred             cCCCCHHHHHHHHHHHHcCC--hHHHHHHH-----HHHHHHHcCCC--ChHHHHHHHHHHHHHHhh-----Chhh---cc
Confidence            99989999999999999984  34433333     46788888876  678999999999999862     3443   34


Q ss_pred             hCCcHHHHHHhccCCChHHHHHHHHHHHHHhcCCh
Q 015951          300 DRFFLKSVVDLTASADLDLQEKALAAIKNLLQLRT  334 (397)
Q Consensus       300 ~~g~v~~Lv~lL~~~d~dv~E~aL~aL~~L~~~~~  334 (397)
                      +.++++.+..+|..+|+.|+..|+.+|..+....+
T Consensus       158 ~~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~~~~  192 (591)
T 2vgl_B          158 DQGFLDSLRDLIADSNPMVVANAVAALSEISESHP  192 (591)
T ss_dssp             HHHHHHHHHHTTSCSCHHHHHHHHHHHHHHTTSCC
T ss_pred             cccHHHHHHHHhCCCChhHHHHHHHHHHHHHhhCC
Confidence            46899999999999999999999999999988754

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*

Probab=98.19  E-value=6.7e-06  Score=89.30  Aligned_cols=188  Identities=14%  Similarity=0.084  Sum_probs=131.4

Q ss_pred             HHHHhhCCCCCHHHHHHHHHHHHhccCCCCchhHHHhc--CCHHHHHHhc-----------CC-----------CCHHHH
Q 015951          131 AIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKL--GGLSVLVGQL-----------NH-----------PDTDIR  186 (397)
Q Consensus       131 ~i~~L~~~~~s~e~k~~AL~~L~~Lve~iDnA~~~~~l--GGl~~Li~lL-----------~s-----------~~~~ir  186 (397)
                      ++..+.+  .+++.+..|++.+..+++.....+.+...  ..+|.++..+           ..           .+-.+|
T Consensus       261 l~~~~~~--~~~~vr~~a~e~l~~l~~~~~~~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr  338 (852)
T 4fdd_A          261 MLQRTQD--QDENVALEACEFWLTLAEQPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLR  338 (852)
T ss_dssp             HHHHHTC--SSHHHHHHHHHHHHHHTTSTTHHHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC------------CCCCHH
T ss_pred             HHHHccC--CcHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHcCCcHhHHHHhcCCcccccccccccccchHH
Confidence            3344443  35677888999988888764332212111  2355666665           22           223579


Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCC
Q 015951          187 KISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSS  266 (397)
Q Consensus       187 ~~Aa~vLg~~aqNNp~~Q~~vl~~g~lp~Ll~LL~s~~~~v~~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~  266 (397)
                      ..|+.+|+.++...+.   .++. ..+|.+.+++.+++..+|..|++||++++.+.+.....+ -.+.++.|..++.++ 
T Consensus       339 ~~a~~~L~~la~~~~~---~~~~-~l~~~l~~~l~~~~~~~R~aa~~alg~i~~~~~~~~~~~-l~~~l~~l~~~l~d~-  412 (852)
T 4fdd_A          339 KCSAAALDVLANVYRD---ELLP-HILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPY-LPELIPHLIQCLSDK-  412 (852)
T ss_dssp             HHHHHHHHHHHHHHGG---GGHH-HHHHHHHHHHTCSSHHHHHHHHHHHHHTTTTTHHHHGGG-HHHHHHHHHHHTTCS-
T ss_pred             HHHHHHHHHHHHhccH---HHHH-HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcchHHHHHH-HHHHHHHHHHHcCCC-
Confidence            9999999999976542   2333 468888888988888999999999999998776533332 246789999999876 


Q ss_pred             ccHHHHHHHHHHHHHHhhchhccCCCCcchhHHhCCcHHHHHHhccCCChHHHHHHHHHHHHHhcC
Q 015951          267 FEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQL  332 (397)
Q Consensus       267 ~d~klr~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~dv~E~aL~aL~~L~~~  332 (397)
                       +..+|..|+++++.++....   .......  -..+++.++..|..+++.+++.|+.+|.+++..
T Consensus       413 -~~~Vr~~a~~~l~~l~~~~~---~~~~~~~--~~~ll~~L~~~L~d~~~~vr~~a~~aL~~l~~~  472 (852)
T 4fdd_A          413 -KALVRSITCWTLSRYAHWVV---SQPPDTY--LKPLMTELLKRILDSNKRVQEAACSAFATLEEE  472 (852)
T ss_dssp             -SHHHHHHHHHHHHHTHHHHH---HSCTTTT--HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH
T ss_pred             -CHHHHHHHHHHHHHHHHHhc---cchHHHH--HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Confidence             66899999999999986310   0111111  135778888888888999999999999999854

>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B

Probab=98.17  E-value=2e-05  Score=82.63  Aligned_cols=160  Identities=16%  Similarity=0.169  Sum_probs=112.3

Q ss_pred             HhHHHHHHHHHhc-CCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhccCCCCchhHHHhcCCHHHHHHhcCCCCHHH
Q 015951          107 KRQMEIKELMEKL-KTPSDAQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDI  185 (397)
Q Consensus       107 ~r~~~L~ea~~~~-~~~~d~~lmk~~i~~L~~~~~s~e~k~~AL~~L~~Lve~iDnA~~~~~lGGl~~Li~lL~s~~~~i  185 (397)
                      +|.+-+++.+-.+ .+.+-....-..++.+.++  +.+.|..+.-.+..+.+.  + .++. .-.+..+.+-|+++++.+
T Consensus        29 ~k~~~~~kli~~~~~G~d~~~~~~~vi~l~~s~--~~~~Krl~yl~l~~~~~~--~-~e~~-~l~~n~l~kdL~~~n~~i  102 (591)
T 2vgl_B           29 KRKEAVKKVIAAMTVGKDVSSLFPDVVNCMQTD--NLELKKLVYLYLMNYAKS--Q-PDMA-IMAVNSFVKDCEDPNPLI  102 (591)
T ss_dssp             HHHHHHHHHHHHHHTTCCCGGGHHHHHHTTSSS--CHHHHHHHHHHHHHHHHH--S-HHHH-HTTHHHHGGGSSSSSHHH
T ss_pred             HHHHHHHHHHHHHHCCCChHHHHHHHHHHhCCC--CHHHHHHHHHHHHHHccc--C-chHH-HHHHHHHHHHcCCCCHHH
Confidence            4555566665433 2433334455566655443  466676655555554431  1 1121 234567777899999999


Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCC
Q 015951          186 RKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNS  265 (397)
Q Consensus       186 r~~Aa~vLg~~aqNNp~~Q~~vl~~g~lp~Ll~LL~s~~~~v~~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~  265 (397)
                      |..|..+||++.  +|.....     .+|.+.+++.+.++.+|.+|++|+..+.+.+|....   ..+-++.|..+|.++
T Consensus       103 r~~AL~~L~~i~--~~~~~~~-----l~~~l~~~L~d~~~~VRk~A~~al~~i~~~~p~~~~---~~~~~~~l~~lL~d~  172 (591)
T 2vgl_B          103 RALAVRTMGCIR--VDKITEY-----LCEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQMVE---DQGFLDSLRDLIADS  172 (591)
T ss_dssp             HHHHHHHHHTCC--SGGGHHH-----HHHHHHHHSSCSCHHHHHHHHHHHHHHHHSSCCCHH---HHHHHHHHHHTTSCS
T ss_pred             HHHHHHHHHcCC--hHHHHHH-----HHHHHHHHcCCCChHHHHHHHHHHHHHHhhChhhcc---cccHHHHHHHHhCCC
Confidence            999999999986  4544433     468899999999999999999999999998876433   345678999999876


Q ss_pred             CccHHHHHHHHHHHHHHhh
Q 015951          266 SFEIRLHRKAVSLVGDLAK  284 (397)
Q Consensus       266 ~~d~klr~kA~~lL~~L~~  284 (397)
                        +..++..|+.++..++.
T Consensus       173 --d~~V~~~A~~aL~~i~~  189 (591)
T 2vgl_B          173 --NPMVVANAVAALSEISE  189 (591)
T ss_dssp             --CHHHHHHHHHHHHHHTT
T ss_pred             --ChhHHHHHHHHHHHHHh
Confidence              66799999999999985

>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}

Probab=98.12  E-value=2.4e-05  Score=73.46  Aligned_cols=182  Identities=9%  Similarity=0.020  Sum_probs=128.9

Q ss_pred             CCHHHHHHHHHHHHh-ccCC-CCc---hhHHHhcCCHHHHHHhc-CCCCHHHHHHHHHHHHHHhcCC--hHHH-HHHHHc
Q 015951          140 LSLEDSQRALQELLI-LVEP-IDN---ANDLSKLGGLSVLVGQL-NHPDTDIRKISAWILGKASQNN--PLVQ-KQVLEL  210 (397)
Q Consensus       140 ~s~e~k~~AL~~L~~-Lve~-iDn---A~~~~~lGGl~~Li~lL-~s~~~~ir~~Aa~vLg~~aqNN--p~~Q-~~vl~~  210 (397)
                      ....+|..|++.|.. +++. .+-   ..++..  .+..|...| +.++..+|..|+.+|+.++.+-  +..+ ....  
T Consensus        28 ~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~--~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~~y~~--  103 (249)
T 2qk1_A           28 SKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSN--LLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSKDYVS--  103 (249)
T ss_dssp             SSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHH--HHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCHHHHH--
T ss_pred             CCHHHHHHHHHHHHHHHHhcCCccccCcccHHH--HHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccHHHHH--
Confidence            367889999999999 8853 121   122332  266777888 7899999999999999999531  2232 2222  


Q ss_pred             CcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccC
Q 015951          211 GALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENM  290 (397)
Q Consensus       211 g~lp~Ll~LL~s~~~~v~~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klr~kA~~lL~~L~~~~l~~~  290 (397)
                      -.+|.++..+.+....|+..+.+|+-+++.+.++....-+-..-++.|...|+++  +..+|..++.+|..++..    .
T Consensus       104 ~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k--~~~vk~~al~~l~~~~~~----~  177 (249)
T 2qk1_A          104 LVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHK--TPQIRMECTQLFNASMKE----E  177 (249)
T ss_dssp             HHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCS--SHHHHHHHHHHHHHHHHH----C
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCC--ChHHHHHHHHHHHHHHHH----c
Confidence            2699999999998899999999999998876432111000012456777888876  567999999999999863    1


Q ss_pred             CC--CcchhHHhCCcHHHHHHhccCCChHHHHHHHHHHHHHhc
Q 015951          291 HK--VEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQ  331 (397)
Q Consensus       291 ~~--~~~~~l~~~g~v~~Lv~lL~~~d~dv~E~aL~aL~~L~~  331 (397)
                      ..  ..........+++.+..++...+..+|+.|..++..+..
T Consensus       178 ~~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~  220 (249)
T 2qk1_A          178 KDGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIK  220 (249)
T ss_dssp             CSCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHH
T ss_pred             CCcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence            11  111112235789999999999999999999999998874

>3qml_C Protein SLS1, nucleotide exchange factor SIL1; armadillo like repeats, chaperone-protein transport complex; 2.31A {Saccharomyces cerevisiae}

Probab=98.11  E-value=1.3e-05  Score=77.51  Aligned_cols=137  Identities=16%  Similarity=0.198  Sum_probs=100.6

Q ss_pred             HHHHHHHHHHHHhccCCCCchhHHHhcCCHHHHHH--hcCCCCHHHHHHHHHHHHHHhcCChHHHHHHHHc--CcHHH--
Q 015951          142 LEDSQRALQELLILVEPIDNANDLSKLGGLSVLVG--QLNHPDTDIRKISAWILGKASQNNPLVQKQVLEL--GALSK--  215 (397)
Q Consensus       142 ~e~k~~AL~~L~~Lve~iDnA~~~~~lGGl~~Li~--lL~s~~~~ir~~Aa~vLg~~aqNNp~~Q~~vl~~--g~lp~--  215 (397)
                      .+.-..||+.|.++.|+|...-.|.... ++.|-.  |..+..+.+|..|+++||.+-+|||.+-+.|.+.  ..+..  
T Consensus        42 ~~~le~aLD~L~ElSHDi~~G~KI~~~e-f~lL~nL~~~~~~~~~~rE~aarII~ssLRNNP~Al~~V~~~~p~fv~~lf  120 (315)
T 3qml_C           42 IARLEDSFDRIMEFAHDYKHGYKIITHE-FALLANLSLNENLPLTLRELSTRVITSCLRNNPPVVEFINESFPNFKSKIM  120 (315)
T ss_dssp             HHHHHHHHHHHGGGTTSHHHHHHHHHHH-HHHHHHHHHCTTSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHCTTHHHHHH
T ss_pred             HHHHHHHHHHHHHhhhhHHhhhHHHhCc-HHHHHHHHhhccCChhHHHHHHHHHHHHHccCHHHHHHHHHhChhHHHHHH
Confidence            3456789999999999999988887643 444444  4466788999999999999999999999988874  22333  


Q ss_pred             --HHHhhcC---CCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhh
Q 015951          216 --LMKMVKS---SFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAK  284 (397)
Q Consensus       216 --Ll~LL~s---~~~~v~~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klr~kA~~lL~~L~~  284 (397)
                        |-.++..   ....+++.-+++|..|+.+.    ..| ...|+..|..++.....+..+|+|+..++.++..
T Consensus       121 ~~L~~~~~~~~~~~~~l~KR~LsII~~L~~~~----~~F-~~~~m~~L~~ly~~~~~d~~~k~Kvl~li~d~f~  189 (315)
T 3qml_C          121 AALSNLNDSNHRSSNILIKRYLSILNELPVTS----EDL-PIYSTVVLQNVYERNNKDKQLQIKVLELISKILK  189 (315)
T ss_dssp             HHHHHHHCC--CCCHHHHHHHHHHHHHSCCCS----TTC---CCHHHHHHHHHHTTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhhcccchhHHHHHHHHHHHHHHhcCh----Hhh-hhccHHHHHHHHccCCCCHHHHHHHHHHHHHHcc
Confidence              3333322   23456677899999998764    234 3568899999887433366799999999999874

>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A

Probab=98.01  E-value=0.00014  Score=71.82  Aligned_cols=198  Identities=14%  Similarity=0.136  Sum_probs=122.6

Q ss_pred             HHHHHHHHHHhhCCCCCHHHHHHHHHHHHhccCCCCch---hHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCh
Q 015951          125 AQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNA---NDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNP  201 (397)
Q Consensus       125 ~~lmk~~i~~L~~~~~s~e~k~~AL~~L~~Lve~iDnA---~~~~~lGGl~~Li~lL~s~~~~ir~~Aa~vLg~~aqNNp  201 (397)
                      ..++..++..+.+.+.+.+.+..|+..+..+++-+...   ..+... .++.+..++.++++++|..++++++.++...+
T Consensus       171 ~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~-l~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~  249 (462)
T 1ibr_B          171 NEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHF-IMQVVCEATQCPDTRVRVAALQNLVKIMSLYY  249 (462)
T ss_dssp             HHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHH-HHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCG
T ss_pred             HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhHHHHH-HHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH
Confidence            34666677777776446788888998888766543211   111111 25555667788999999999999999997665


Q ss_pred             HHHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCh------------------hcH-------H---------
Q 015951          202 LVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNL------------------AGQ-------E---------  247 (397)
Q Consensus       202 ~~Q~~vl~~g~lp~Ll~LL~s~~~~v~~kAl~ALS~LiR~~~------------------~~~-------~---------  247 (397)
                      ..-...+..+.++.++..+.+.++.++..|+..++.+++...                  ...       .         
T Consensus       250 ~~~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~l~~~  329 (462)
T 1ibr_B          250 QYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQT  329 (462)
T ss_dssp             GGCTTTTTTTHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhHHHHHHHhhhccHHHHHH
Confidence            321111111456666666666666777777666666554310                  000       0         


Q ss_pred             --------------------------------HHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCC-c
Q 015951          248 --------------------------------MFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKV-E  294 (397)
Q Consensus       248 --------------------------------~f~~~gGi~~L~~lL~s~~~d~klr~kA~~lL~~L~~~~l~~~~~~-~  294 (397)
                                                      .++ ...++.+...+.++  +.++|..|+++++.++..    ..+. .
T Consensus       330 l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~~~~~-~~~~~~l~~~l~~~--~~~~r~aal~~l~~l~~~----~~~~~~  402 (462)
T 1ibr_B          330 LTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIV-PHVLPFIKEHIKNP--DWRYRDAAVMAFGCILEG----PEPSQL  402 (462)
T ss_dssp             TTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTTTHH-HHHHHHHHHHTTCS--SHHHHHHHHHHHHHTSSS----SCTTTT
T ss_pred             HHhcccccccccchHHHHHHHHHHHHHHhccHHHH-HHHHHHHHHHhcCC--ChHHHHHHHHHHHHHhcC----CcHHHH
Confidence                                            000 01233334444443  556777777777777642    1111 2


Q ss_pred             chhHHhCCcHHHHHHhccCCChHHHHHHHHHHHHHhcC
Q 015951          295 PPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQL  332 (397)
Q Consensus       295 ~~~l~~~g~v~~Lv~lL~~~d~dv~E~aL~aL~~L~~~  332 (397)
                      .+.+  ..+++.++.+|+.+++.+|..|+.+|.+++..
T Consensus       403 ~~~l--~~~~~~l~~~l~d~~~~Vr~~a~~~l~~~~~~  438 (462)
T 1ibr_B          403 KPLV--IQAMPTLIELMKDPSVVVRDTAAWTVGRICEL  438 (462)
T ss_dssp             CTTT--TTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHH--HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHh
Confidence            2222  56889999999999999999999999999864

>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A

Probab=97.98  E-value=0.00011  Score=83.03  Aligned_cols=193  Identities=11%  Similarity=0.094  Sum_probs=135.2

Q ss_pred             HHHHHHHhhCCCCCHHHHHHHHHHHHhccCCCCc-hhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHHHHH
Q 015951          128 IQIAIDDLNNSTLSLEDSQRALQELLILVEPIDN-ANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQ  206 (397)
Q Consensus       128 mk~~i~~L~~~~~s~e~k~~AL~~L~~Lve~iDn-A~~~~~lGGl~~Li~lL~s~~~~ir~~Aa~vLg~~aqNNp~~Q~~  206 (397)
                      +..+++.+.++  +.+.|..|+..|...+..--. ...-..-..++.+++.|.++++.+|..|+.+|+.++...+.   .
T Consensus         8 l~~lL~~l~s~--d~~~R~~A~~~L~~~l~~~~~~~~~~~~~~il~~Ll~~L~d~~~~vR~~A~~~L~~l~~~~~~---~   82 (1230)
T 1u6g_C            8 ISNLLEKMTSS--DKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKE---Y   82 (1230)
T ss_dssp             HHHHHHHTTCS--SHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCH---H
T ss_pred             HHHHHHhcCCC--CHhHHHHHHHHHHHHHcccccCCChhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCCH---H
Confidence            44555665544  577888888888876543110 00011113567788999999999999999999999987654   1


Q ss_pred             HHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhc-----HHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHH
Q 015951          207 VLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAG-----QEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGD  281 (397)
Q Consensus       207 vl~~g~lp~Ll~LL~s~~~~v~~kAl~ALS~LiR~~~~~-----~~~f~~~gGi~~L~~lL~s~~~d~klr~kA~~lL~~  281 (397)
                      .+. ..++.|+..+.++++.+|..|..+|+.++...++.     ....+-..-++.|...+.+. .+.++|..|+.++..
T Consensus        83 ~~~-~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~~-~~~~~~~~al~~l~~  160 (1230)
T 1u6g_C           83 QVE-TIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQ-EDVSVQLEALDIMAD  160 (1230)
T ss_dssp             HHH-HHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCC-SCHHHHHHHHHHHHH
T ss_pred             HHH-HHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHcCC-CchHHHHHHHHHHHH
Confidence            122 36788898888888888999999999998775542     11112235678888888742 256789999999999


Q ss_pred             HhhchhccCCCCcchhHHhCCcHHHHHHhccCCChHHHHHHHHHHHHHhcCC
Q 015951          282 LAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLR  333 (397)
Q Consensus       282 L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~dv~E~aL~aL~~L~~~~  333 (397)
                      ++..    ..+...+.+  ..+++.+...|.+++..+|+.|+.+|..++...
T Consensus       161 ~~~~----~~~~l~~~~--~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~  206 (1230)
T 1u6g_C          161 MLSR----QGGLLVNFH--PSILTCLLPQLTSPRLAVRKRTIIALGHLVMSC  206 (1230)
T ss_dssp             HHHH----TCSSCTTTH--HHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC
T ss_pred             HHHH----hHhHHHHHH--HHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhc
Confidence            9852    122333322  356777888888889999999999999998764

>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A

Probab=97.89  E-value=4.3e-05  Score=75.47  Aligned_cols=200  Identities=9%  Similarity=-0.015  Sum_probs=136.2

Q ss_pred             HHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhccCCCCchhH------HHhc------CCHHHHHHhcCCCCHHHHHHHHH
Q 015951          124 DAQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNAND------LSKL------GGLSVLVGQLNHPDTDIRKISAW  191 (397)
Q Consensus       124 d~~lmk~~i~~L~~~~~s~e~k~~AL~~L~~Lve~iDnA~~------~~~l------GGl~~Li~lL~s~~~~ir~~Aa~  191 (397)
                      ..+.+..++.++.+.+.++..|..|...|..++.......+      +..+      .--..|++.|.++++.+ ..++.
T Consensus        33 ~~~~~~~L~~il~~~~~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~~~~~~l~~~~~~~ik~~ll~~l~~~~~~v-~~~~~  111 (462)
T 1ibr_B           33 LPTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQRWLAIDANARREVKNYVLQTLGTETYRP-SSASQ  111 (462)
T ss_dssp             HHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHTSCHHHHHHHHHHHHHHTTCCCSSS-CSHHH
T ss_pred             hHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhccccchHHHHHHHhhhhcCCHHHHHHHHHHHHHHhCCCCchh-hHHHH
Confidence            35667778888888766788899998888888765432111      1111      12234678888888889 99999


Q ss_pred             HHHHHhcCC-hHHHHHHHHcCcHHHHHHhhcCC--CHHHHHHHHHHHHHHhcCC-hhcHHHHHhcCcHHHHHHhhcCCCc
Q 015951          192 ILGKASQNN-PLVQKQVLELGALSKLMKMVKSS--FVEEAVKALYTVSSLIRNN-LAGQEMFYVEAGDLMLQDILGNSSF  267 (397)
Q Consensus       192 vLg~~aqNN-p~~Q~~vl~~g~lp~Ll~LL~s~--~~~v~~kAl~ALS~LiR~~-~~~~~~f~~~gGi~~L~~lL~s~~~  267 (397)
                      +|+.++... |. ..   -.+.+|.|++.+.++  +..++..|+.+++.++... +.....+. ..-++.+..++.++..
T Consensus       112 ~i~~ia~~~~~~-~~---w~~ll~~L~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~-~~ll~~l~~~l~~~~~  186 (462)
T 1ibr_B          112 CVAGIACAEIPV-NQ---WPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKS-NEILTAIIQGMRKEEP  186 (462)
T ss_dssp             HHHHHHHHHGGG-TC---CTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGGH-HHHHHHHHHHHSTTCC
T ss_pred             HHHHHHHHhccc-cc---cHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhCCchhhHhHH-HHHHHHHHHHhCCCCC
Confidence            999998642 21 00   136899999999988  7889999999999998765 32222222 2366788888887632


Q ss_pred             cHHHHHHHHHHHHHHhhchhccCCCCcchhHHhCCcHHHHHHhccCCChHHHHHHHHHHHHHhcCC
Q 015951          268 EIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLR  333 (397)
Q Consensus       268 d~klr~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~dv~E~aL~aL~~L~~~~  333 (397)
                      +..+|..|+.++.+++...    .+..........+++.+...+.+++.+++..++.+|..++...
T Consensus       187 ~~~vr~~a~~~l~~~~~~~----~~~~~~~~~~~~l~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~  248 (462)
T 1ibr_B          187 SNNVKLAATNALLNSLEFT----KANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLY  248 (462)
T ss_dssp             CHHHHHHHHHHHHHHTTTT----HHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHC
T ss_pred             CHHHHHHHHHHHHHHHHHH----HHhhhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHH
Confidence            4678999999999876310    0000000111124666677788889999999999999998643

>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16

Probab=97.89  E-value=1e-05  Score=67.85  Aligned_cols=88  Identities=18%  Similarity=0.231  Sum_probs=72.6

Q ss_pred             CHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHH
Q 015951          170 GLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMF  249 (397)
Q Consensus       170 Gl~~Li~lL~s~~~~ir~~Aa~vLg~~aqNNp~~Q~~vl~~g~lp~Ll~LL~s~~~~v~~kAl~ALS~LiR~~~~~~~~f  249 (397)
                      .++.|+.+|+++++.+|..|+++||.+..  +         .+++.|+.++++++..||..|++||+.+-  .       
T Consensus        43 ~~~~L~~~L~d~~~~vR~~A~~aL~~~~~--~---------~a~~~L~~~L~d~~~~VR~~A~~aL~~~~--~-------  102 (131)
T 1te4_A           43 AFEPLLESLSNEDWRIRGAAAWIIGNFQD--E---------RAVEPLIKLLEDDSGFVRSGAARSLEQIG--G-------  102 (131)
T ss_dssp             THHHHHHGGGCSCHHHHHHHHHHHGGGCS--H---------HHHHHHHHHHHHCCTHHHHHHHHHHHHHC--S-------
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHhcCC--H---------HHHHHHHHHHcCCCHHHHHHHHHHHHHhC--c-------
Confidence            37899999999999999999999999862  2         35899999999888899999999999873  1       


Q ss_pred             HhcCcHHHHHHhhcCCCccHHHHHHHHHHHHH
Q 015951          250 YVEAGDLMLQDILGNSSFEIRLHRKAVSLVGD  281 (397)
Q Consensus       250 ~~~gGi~~L~~lL~s~~~d~klr~kA~~lL~~  281 (397)
                        ..+++.|..+++++  +..+|..|+.+|..
T Consensus       103 --~~a~~~L~~~l~d~--~~~vr~~A~~aL~~  130 (131)
T 1te4_A          103 --ERVRAAMEKLAETG--TGFARKVAVNYLET  130 (131)
T ss_dssp             --HHHHHHHHHHTTSC--CTHHHHHHHHHGGG
T ss_pred             --HHHHHHHHHHHhCC--CHHHHHHHHHHHHh
Confidence              23578889999865  55688888887653

>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A

Probab=97.86  E-value=6.4e-05  Score=80.69  Aligned_cols=180  Identities=15%  Similarity=0.192  Sum_probs=121.1

Q ss_pred             HHHHHHHHHHhccCCCCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCh-HHHHHHHHcCcHHHHHHhhcC
Q 015951          144 DSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNP-LVQKQVLELGALSKLMKMVKS  222 (397)
Q Consensus       144 ~k~~AL~~L~~Lve~iDnA~~~~~lGGl~~Li~lL~s~~~~ir~~Aa~vLg~~aqNNp-~~Q~~vl~~g~lp~Ll~LL~s  222 (397)
                      .|..|...|..+++...  ..+.. ..++.+...|+++++.+|..|++++|.++.+.+ ..-...+ ...+|.|+..+.+
T Consensus       344 ~r~~a~~~l~~l~~~~~--~~~~~-~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~-~~~l~~l~~~l~d  419 (876)
T 1qgr_A          344 PCKAAGVCLMLLATCCE--DDIVP-HVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLV-IQAMPTLIELMKD  419 (876)
T ss_dssp             HHHHHHHHHHHHHHHHG--GGGHH-HHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHH-HHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHHHHCc--HhhHH-HHHHHHHHHccCCChHHHHHHHHHHHHHHcCCCHHHHHHHH-HHHHHHHHHHhCC
Confidence            45566666665554322  11211 345556677888999999999999999998754 3222233 3489999999999


Q ss_pred             CCHHHHHHHHHHHHHHhcCChhcH--HHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhcc----------C
Q 015951          223 SFVEEAVKALYTVSSLIRNNLAGQ--EMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLEN----------M  290 (397)
Q Consensus       223 ~~~~v~~kAl~ALS~LiR~~~~~~--~~f~~~gGi~~L~~lL~s~~~d~klr~kA~~lL~~L~~~~l~~----------~  290 (397)
                      ++..+|..|+++|+.++...++..  ..++ ...++.|...+.++   .+++..+++++.+++......          .
T Consensus       420 ~~~~vr~~a~~~l~~~~~~~~~~~~~~~~l-~~~l~~l~~~l~~~---~~v~~~a~~al~~l~~~~~~~~~~~~~~~~~~  495 (876)
T 1qgr_A          420 PSVVVRDTAAWTVGRICELLPEAAINDVYL-APLLQCLIEGLSAE---PRVASNVCWAFSSLAEAAYEAADVADDQEEPA  495 (876)
T ss_dssp             SSHHHHHHHHHHHHHHHHHCGGGTSSTTTH-HHHHHHHHHHTTSC---HHHHHHHHHHHHHHHHHHHHTTSCTTSCCCCC
T ss_pred             CCHHHHHHHHHHHHHHHHhCchhcccHHHH-HHHHHHHHHHHcCC---HHHHHHHHHHHHHHHHHhhhcccccccccccc
Confidence            889999999999999998765421  1111 24567777778763   578999999999998631000          0


Q ss_pred             CCCcchhHHhCCcHHHHHHhccCC---ChHHHHHHHHHHHHHhcCC
Q 015951          291 HKVEPPLFRDRFFLKSVVDLTASA---DLDLQEKALAAIKNLLQLR  333 (397)
Q Consensus       291 ~~~~~~~l~~~g~v~~Lv~lL~~~---d~dv~E~aL~aL~~L~~~~  333 (397)
                      .....+.+  ..+++.+...+...   +..++..++.++..++...
T Consensus       496 ~~~l~~~~--~~il~~L~~~l~~~~~~~~~~r~~~~~~l~~l~~~~  539 (876)
T 1qgr_A          496 TYCLSSSF--ELIVQKLLETTDRPDGHQNNLRSSAYESLMEIVKNS  539 (876)
T ss_dssp             CCSSTTTH--HHHHHHHHHHTTSCSSCSTTHHHHHHHHHHHHHHTC
T ss_pred             chhhhHhH--HHHHHHHHHHHhCcCcchhhHHHHHHHHHHHHHHHC
Confidence            11233333  24677777777654   3578888999998887653

>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A

Probab=97.86  E-value=9.6e-05  Score=79.14  Aligned_cols=198  Identities=9%  Similarity=0.095  Sum_probs=127.6

Q ss_pred             HHHHHHHHhhCCCC-----CHHHHHHHHHHHHhccCCCCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCh
Q 015951          127 LIQIAIDDLNNSTL-----SLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNP  201 (397)
Q Consensus       127 lmk~~i~~L~~~~~-----s~e~k~~AL~~L~~Lve~iDnA~~~~~lGGl~~Li~lL~s~~~~ir~~Aa~vLg~~aqNNp  201 (397)
                      ++..++..+...+.     +...+..|.+.|..++....  ..+.. ..++.+.+.|++++..+|..|++++|.++....
T Consensus       325 il~~ll~~l~~~~~d~~d~~~~~r~~a~~~L~~l~~~~~--~~~~~-~l~~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~  401 (861)
T 2bpt_A          325 VVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCG--NHILE-PVLEFVEQNITADNWRNREAAVMAFGSIMDGPD  401 (861)
T ss_dssp             HHHHHHHHTTCCCCC-CCCCCHHHHHHHHHHHHHHHHHG--GGGHH-HHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSC
T ss_pred             HHHHHHHHHHhcccccccccCcHHHHHHHHHHHHHHHcc--HhHHH-HHHHHHHHHcCCCChhHHHHHHHHHHHHHcCCC
Confidence            44445555554321     12345566666665554322  11111 234555567788999999999999999997642


Q ss_pred             -HHHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcH--HHHHhcCcHHHHHHhhcCCCccHHHHHHHHHH
Q 015951          202 -LVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQ--EMFYVEAGDLMLQDILGNSSFEIRLHRKAVSL  278 (397)
Q Consensus       202 -~~Q~~vl~~g~lp~Ll~LL~s~~~~v~~kAl~ALS~LiR~~~~~~--~~f~~~gGi~~L~~lL~s~~~d~klr~kA~~l  278 (397)
                       ..-...+. ..+|.|+..+.++++.+|..++++|+.++...++..  ..+. ..-++.|...+.++   .+++..|+++
T Consensus       402 ~~~~~~~l~-~il~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~-~~~l~~l~~~l~~~---~~v~~~a~~a  476 (861)
T 2bpt_A          402 KVQRTYYVH-QALPSILNLMNDQSLQVKETTAWCIGRIADSVAESIDPQQHL-PGVVQACLIGLQDH---PKVATNCSWT  476 (861)
T ss_dssp             HHHHHHHHH-HHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHGGGSCTTTTH-HHHHHHHHHHHTSC---HHHHHHHHHH
T ss_pred             HHHHHHHHH-HHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhhhhcCCHHHH-HHHHHHHHHHhccC---hHHHHHHHHH
Confidence             32222333 478999999998889999999999999887543210  1111 23467778888753   5789999999


Q ss_pred             HHHHhhchhccCCCCcchhHHhCCcHHHHHHhccCCC--hHHHHHHHHHHHHHhcCCh
Q 015951          279 VGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASAD--LDLQEKALAAIKNLLQLRT  334 (397)
Q Consensus       279 L~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d--~dv~E~aL~aL~~L~~~~~  334 (397)
                      +.+++..-.+...+...+.+  ..+++.+..++...|  ..++..++.+|..++...+
T Consensus       477 l~~l~~~~~~~~~~~l~~~~--~~il~~L~~~l~~~d~~~~vr~~a~~al~~l~~~~~  532 (861)
T 2bpt_A          477 IINLVEQLAEATPSPIYNFY--PALVDGLIGAANRIDNEFNARASAFSALTTMVEYAT  532 (861)
T ss_dssp             HHHHHHHHSSSSSCGGGGGH--HHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHhcccccchhhHHHH--HHHHHHHHHHHhCcCcchHHHHHHHHHHHHHHHHcc
Confidence            99998631000012233333  346777888887544  7899999999999987643

>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1

Probab=97.80  E-value=0.00047  Score=72.77  Aligned_cols=178  Identities=15%  Similarity=0.130  Sum_probs=122.3

Q ss_pred             HHHHHhhCCCCCHHHHHHHHHHHHhccCCCCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHHHHHHHH
Q 015951          130 IAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLE  209 (397)
Q Consensus       130 ~~i~~L~~~~~s~e~k~~AL~~L~~Lve~iDnA~~~~~lGGl~~Li~lL~s~~~~ir~~Aa~vLg~~aqNNp~~Q~~vl~  209 (397)
                      ++++.+.++  +.+.|....-.+..+.+.-   .++.. -.+..+.+-|+++++.+|..|+++||++.  ++..    . 
T Consensus        74 ~vik~~~s~--~~~~Krl~Yl~~~~~~~~~---~e~~~-l~in~l~kDL~~~n~~vr~lAL~~L~~i~--~~~~----~-  140 (618)
T 1w63_A           74 ECLKLIASQ--KFTDKRIGYLGAMLLLDER---QDVHL-LMTNCIKNDLNHSTQFVQGLALCTLGCMG--SSEM----C-  140 (618)
T ss_dssp             HHHHHHHSS--SHHHHHHHHHHHHHHCCCC---HHHHH-HHHHHHHHHHSCSSSHHHHHHHHHHHHHC--CHHH----H-
T ss_pred             HHHHHHcCC--chHHHHHHHHHHHHHhCCC---cHHHH-HHHHHHHHhcCCCCHhHHHHHHHHHHhcC--CHHH----H-
Confidence            344444433  3455555544555555431   22221 24556777889999999999999999997  3432    2 


Q ss_pred             cCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhcc
Q 015951          210 LGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLEN  289 (397)
Q Consensus       210 ~g~lp~Ll~LL~s~~~~v~~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klr~kA~~lL~~L~~~~l~~  289 (397)
                      ...+|.+.+++.+.++.+|.+|+.|+..+.+.+|....     +-++.+..+|.++  +..++..|+.++..++..    
T Consensus       141 ~~l~~~l~~~L~~~~~~VRk~A~~al~~l~~~~p~~v~-----~~~~~l~~lL~D~--d~~V~~~Al~~L~~i~~~----  209 (618)
T 1w63_A          141 RDLAGEVEKLLKTSNSYLRKKAALCAVHVIRKVPELME-----MFLPATKNLLNEK--NHGVLHTSVVLLTEMCER----  209 (618)
T ss_dssp             HHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHCGGGGG-----GGGGGTTTSTTCC--CHHHHHHHHHHHHHHCCS----
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHChHHHH-----HHHHHHHHHhCCC--CHhHHHHHHHHHHHHHHh----
Confidence            24689999999999999999999999999998886554     4456677788775  667899999999999842    


Q ss_pred             CCCCcchhHHhCCcHHHHHHhccC---------------CChHHHHHHHHHHHHHhcCCh
Q 015951          290 MHKVEPPLFRDRFFLKSVVDLTAS---------------ADLDLQEKALAAIKNLLQLRT  334 (397)
Q Consensus       290 ~~~~~~~~l~~~g~v~~Lv~lL~~---------------~d~dv~E~aL~aL~~L~~~~~  334 (397)
                       +++....+.  .+++.++.+|..               .++-.|-.++.+|..+....+
T Consensus       210 -~~~~~~~~~--~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~~~~~  266 (618)
T 1w63_A          210 -SPDMLAHFR--KLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGRNDD  266 (618)
T ss_dssp             -HHHHHHHHH--TTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHTTTCH
T ss_pred             -ChHHHHHHH--HHHHHHHHHHHHHHcCCCCccccccCCCCChHHHHHHHHHHHhCCCCH
Confidence             222222232  466767666542               477788888888888876543

>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A

Probab=97.74  E-value=5.7e-05  Score=80.92  Aligned_cols=197  Identities=13%  Similarity=0.155  Sum_probs=131.7

Q ss_pred             HHHHHHHHHHhhCCCCCHHHHHHHHHHHHhccCCCCchh-HHHhcCCHHHHHHhcCC---------------CCHHHHHH
Q 015951          125 AQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNAN-DLSKLGGLSVLVGQLNH---------------PDTDIRKI  188 (397)
Q Consensus       125 ~~lmk~~i~~L~~~~~s~e~k~~AL~~L~~Lve~iDnA~-~~~~lGGl~~Li~lL~s---------------~~~~ir~~  188 (397)
                      ..+|..++..+.+.+.+.+.+..+++.+..++....... .+. ...+|.++..|..               ....+|..
T Consensus       497 ~~il~~L~~~l~~~d~~~~vr~~a~~al~~l~~~~~~~~~~~~-~~l~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~  575 (861)
T 2bpt_A          497 PALVDGLIGAANRIDNEFNARASAFSALTTMVEYATDTVAETS-ASISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSN  575 (861)
T ss_dssp             HHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHCCGGGHHHH-HHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCcCcchHHHHHHHHHHHHHHHHcchhhHHHH-HHHHHHHHHHHHHHHhhhcccCChhhHHHHHHHHHH
Confidence            356667777776554444567778888887776544321 111 1356667766542               24678999


Q ss_pred             HHHHHHHHhcCChHHHHHHHHcCcHHHHHHhhcCCCH-HHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCc
Q 015951          189 SAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFV-EEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSF  267 (397)
Q Consensus       189 Aa~vLg~~aqNNp~~Q~~vl~~g~lp~Ll~LL~s~~~-~v~~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~  267 (397)
                      ++.+|+++++..+..-..+. ...++.++.++++.+. .++..++.++++++.........++ ..-++.|...+.++  
T Consensus       576 ~~~~l~~l~~~~~~~~~~~~-~~l~~~l~~~l~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~l-~~i~~~l~~~l~~~--  651 (861)
T 2bpt_A          576 ILTVLAAVIRKSPSSVEPVA-DMLMGLFFRLLEKKDSAFIEDDVFYAISALAASLGKGFEKYL-ETFSPYLLKALNQV--  651 (861)
T ss_dssp             HHHHHHHHHHHCGGGTGGGH-HHHHHHHHHHHHSTTGGGTHHHHHHHHHHHHHHHGGGGHHHH-HHHHHHHHHHHHCT--
T ss_pred             HHHHHHHHHHHhhhhhHHHH-HHHHHHHHHHHccCCCCcHHHHHHHHHHHHHHHHhhhHHHHH-HHHHHHHHHHhccc--
Confidence            99999999986553101111 1467888888988766 7899999999999876544333333 23677888888754  


Q ss_pred             cHHHHHHHHHHHHHHhhchhccCCCCcchhHHhCCcHHHHHHhccCCC--hHHHHHHHHHHHHHhcC
Q 015951          268 EIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASAD--LDLQEKALAAIKNLLQL  332 (397)
Q Consensus       268 d~klr~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d--~dv~E~aL~aL~~L~~~  332 (397)
                      +..++..++.++.+++..    .++...+.+  ..+++.+...+.+++  .++++.++.++..++..
T Consensus       652 ~~~vr~~a~~~l~~l~~~----~~~~~~~~~--~~l~~~l~~~l~~~~~~~~vr~~~~~~l~~l~~~  712 (861)
T 2bpt_A          652 DSPVSITAVGFIADISNS----LEEDFRRYS--DAMMNVLAQMISNPNARRELKPAVLSVFGDIASN  712 (861)
T ss_dssp             TSHHHHHHHHHHHHHHHH----TGGGGHHHH--HHHHHHHHHHHHCTTCCTTHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHH----hchhccchH--HHHHHHHHHHhCCccccHhhhHHHHHHHHHHHHH
Confidence            456899999999999863    222333332  356677777777653  88999999999998864

>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A

Probab=97.70  E-value=0.00083  Score=75.74  Aligned_cols=200  Identities=14%  Similarity=0.125  Sum_probs=135.6

Q ss_pred             HHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhccCCCCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHH
Q 015951          124 DAQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLV  203 (397)
Q Consensus       124 d~~lmk~~i~~L~~~~~s~e~k~~AL~~L~~Lve~iDnA~~~~~lGGl~~Li~lL~s~~~~ir~~Aa~vLg~~aqNNp~~  203 (397)
                      ...++..+++.+.+  .+.+.|..|+..|..+++.... ..+.  ..++.|+..|.++++.+|..|+.+|+.++..-+.-
T Consensus        46 ~~~il~~Ll~~L~d--~~~~vR~~A~~~L~~l~~~~~~-~~~~--~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~  120 (1230)
T 1u6g_C           46 ERKVVKMILKLLED--KNGEVQNLAVKCLGPLVSKVKE-YQVE--TIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPA  120 (1230)
T ss_dssp             HHHHHHHHHHHTTC--SSHHHHHHHHHHHHHHHTTSCH-HHHH--HHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC--
T ss_pred             HHHHHHHHHHHhcC--CCHHHHHHHHHHHHHHHHhCCH-HHHH--HHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCc
Confidence            34677778888874  3678888999999988876543 2121  24667778888899999999999999999754422


Q ss_pred             ------HHHHHHcCcHHHHHHhhc-CCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHH
Q 015951          204 ------QKQVLELGALSKLMKMVK-SSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAV  276 (397)
Q Consensus       204 ------Q~~vl~~g~lp~Ll~LL~-s~~~~v~~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klr~kA~  276 (397)
                            +.... ...+|.|+..+. +++..++..|+.+++.++..++.....+. ..-++.|...|.++  +..+|..|+
T Consensus       121 ~~~~~~~~~~~-~~llp~L~~~l~~~~~~~~~~~al~~l~~~~~~~~~~l~~~~-~~ll~~l~~~L~~~--~~~vR~~a~  196 (1230)
T 1u6g_C          121 SSGSALAANVC-KKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVNFH-PSILTCLLPQLTSP--RLAVRKRTI  196 (1230)
T ss_dssp             ---CCTHHHHH-HHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTCSSCTTTH-HHHHHHHGGGGGCS--SHHHHHHHH
T ss_pred             ccccchHHHHH-HHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhHhHHHHHH-HHHHHHHHHHHcCC--cHHHHHHHH
Confidence                  22222 247999999998 46788999999999999875543222221 33556777777765  457899999


Q ss_pred             HHHHHHhhchhc---------------cC-CCCcch---------------hHH--hCCcHHHHHHhccCCChHHHHHHH
Q 015951          277 SLVGDLAKCQLE---------------NM-HKVEPP---------------LFR--DRFFLKSVVDLTASADLDLQEKAL  323 (397)
Q Consensus       277 ~lL~~L~~~~l~---------------~~-~~~~~~---------------~l~--~~g~v~~Lv~lL~~~d~dv~E~aL  323 (397)
                      .++..++...-+               .. ++..+.               .+.  -..+++.+...+..+++++++.++
T Consensus       197 ~al~~l~~~~~~~~~~~~l~~l~~~L~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~l~~~ll~~l~d~~~~vR~~a~  276 (1230)
T 1u6g_C          197 IALGHLVMSCGNIVFVDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGHRIGEYLEKIIPLVVKFCNVDDDELREYCI  276 (1230)
T ss_dssp             HHHHHHTTTC----CTTHHHHHHHHHHHTCSSCSCTTHHHHHHHHHHHSSGGGTTSCTTHHHHHHHHHSSCCTTTHHHHH
T ss_pred             HHHHHHHHhcCHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHH
Confidence            999888752100               00 001110               000  034566666777777889999999


Q ss_pred             HHHHHHhcC
Q 015951          324 AAIKNLLQL  332 (397)
Q Consensus       324 ~aL~~L~~~  332 (397)
                      .++..++..
T Consensus       277 ~~l~~l~~~  285 (1230)
T 1u6g_C          277 QAFESFVRR  285 (1230)
T ss_dssp             HHHHHHHHC
T ss_pred             HHHHHHHHH
Confidence            999988875

>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1

Probab=97.68  E-value=0.00064  Score=71.70  Aligned_cols=169  Identities=11%  Similarity=-0.008  Sum_probs=129.5

Q ss_pred             HhhCCCCCHHHHHHHHHHHHhcc-CCCCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCc
Q 015951          134 DLNNSTLSLEDSQRALQELLILV-EPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGA  212 (397)
Q Consensus       134 ~L~~~~~s~e~k~~AL~~L~~Lv-e~iDnA~~~~~lGGl~~Li~lL~s~~~~ir~~Aa~vLg~~aqNNp~~Q~~vl~~g~  212 (397)
                      .|++++  ...|..++..|-++. ...|.      .-|+..+++++.+++.++|..+.-.+...+..+|+.-.     -+
T Consensus        42 ~l~~~~--~~~k~~~l~kli~~~~~G~d~------~~~~~~vik~~~s~~~~~Krl~Yl~~~~~~~~~~e~~~-----l~  108 (618)
T 1w63_A           42 SFREED--NTYRCRNVAKLLYMHMLGYPA------HFGQLECLKLIASQKFTDKRIGYLGAMLLLDERQDVHL-----LM  108 (618)
T ss_dssp             HHTTTC--TTTHHHHHHHHHHHHHTTCCC------GGGHHHHHHHHHSSSHHHHHHHHHHHHHHCCCCHHHHH-----HH
T ss_pred             HhhCCC--HHHHHHHHHHHHHHHHcCCCC------cchHHHHHHHHcCCchHHHHHHHHHHHHHhCCCcHHHH-----HH
Confidence            555543  356777777777643 23332      23888889999999999999999999999988875322     25


Q ss_pred             HHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCC
Q 015951          213 LSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHK  292 (397)
Q Consensus       213 lp~Ll~LL~s~~~~v~~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klr~kA~~lL~~L~~~~l~~~~~  292 (397)
                      +..|.+-+.++++.+|.-|+.+||++.  .+.    +. ..-++.+..+|.++  ++.+|++|+.++..+...     ++
T Consensus       109 in~l~kDL~~~n~~vr~lAL~~L~~i~--~~~----~~-~~l~~~l~~~L~~~--~~~VRk~A~~al~~l~~~-----~p  174 (618)
T 1w63_A          109 TNCIKNDLNHSTQFVQGLALCTLGCMG--SSE----MC-RDLAGEVEKLLKTS--NSYLRKKAALCAVHVIRK-----VP  174 (618)
T ss_dssp             HHHHHHHHSCSSSHHHHHHHHHHHHHC--CHH----HH-HHHHHHHHHHHHSC--CHHHHHHHHHHHHHHHHH-----CG
T ss_pred             HHHHHHhcCCCCHhHHHHHHHHHHhcC--CHH----HH-HHHHHHHHHHHcCC--CHHHHHHHHHHHHHHHHH-----Ch
Confidence            677888888888999999999999985  232    21 24567888889876  678999999999999862     34


Q ss_pred             CcchhHHhCCcHHHHHHhccCCChHHHHHHHHHHHHHhcCCh
Q 015951          293 VEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLRT  334 (397)
Q Consensus       293 ~~~~~l~~~g~v~~Lv~lL~~~d~dv~E~aL~aL~~L~~~~~  334 (397)
                      +..     .++++.+..+|...|+.++..|+.+|..+....+
T Consensus       175 ~~v-----~~~~~~l~~lL~D~d~~V~~~Al~~L~~i~~~~~  211 (618)
T 1w63_A          175 ELM-----EMFLPATKNLLNEKNHGVLHTSVVLLTEMCERSP  211 (618)
T ss_dssp             GGG-----GGGGGGTTTSTTCCCHHHHHHHHHHHHHHCCSHH
T ss_pred             HHH-----HHHHHHHHHHhCCCCHhHHHHHHHHHHHHHHhCh
Confidence            332     2688888999999999999999999999987654

>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}

Probab=97.66  E-value=0.00064  Score=62.41  Aligned_cols=146  Identities=8%  Similarity=0.108  Sum_probs=109.5

Q ss_pred             HHHHHHHHHHhh-CCCCCHHHHHHHHHHHHhccCCCCchhHHHhc--CCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCh
Q 015951          125 AQLIQIAIDDLN-NSTLSLEDSQRALQELLILVEPIDNANDLSKL--GGLSVLVGQLNHPDTDIRKISAWILGKASQNNP  201 (397)
Q Consensus       125 ~~lmk~~i~~L~-~~~~s~e~k~~AL~~L~~Lve~iDnA~~~~~l--GGl~~Li~lL~s~~~~ir~~Aa~vLg~~aqNNp  201 (397)
                      .+++..+...+. ++  ....+..|+..+..++....  ..|...  .-+|.|+..+.++++.+|..|+.+|.+++.+.+
T Consensus        55 ~~i~~~L~~~l~kd~--~~~V~~~a~~~l~~la~~l~--~~~~~~~~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~  130 (242)
T 2qk2_A           55 GALVSALKKVITKDS--NVVLVAMAGKCLALLAKGLA--KRFSNYASACVPSLLEKFKEKKPNVVTALREAIDAIYASTS  130 (242)
T ss_dssp             HHHHHHHHHHHHHCS--CHHHHHHHHHHHHHHHHHHG--GGGHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSC
T ss_pred             HHHHHHHHHHhccCC--CHHHHHHHHHHHHHHHHHHh--hhHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCC
Confidence            355666666664 43  56677888888888885432  233332  368888999999999999999999999998654


Q ss_pred             HHHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhc--HHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHH
Q 015951          202 LVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAG--QEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLV  279 (397)
Q Consensus       202 ~~Q~~vl~~g~lp~Ll~LL~s~~~~v~~kAl~ALS~LiR~~~~~--~~~f~~~gGi~~L~~lL~s~~~d~klr~kA~~lL  279 (397)
                       ..      ..+|.|+..+++.+..+|..++..|+.++..+.+.  ....+ ..-++.|..++.++  +.++|..|..++
T Consensus       131 -~~------~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~~~~~~~~l-~~l~p~l~~~l~D~--~~~VR~~A~~~l  200 (242)
T 2qk2_A          131 -LE------AQQESIVESLSNKNPSVKSETALFIARALTRTQPTALNKKLL-KLLTTSLVKTLNEP--DPTVRDSSAEAL  200 (242)
T ss_dssp             -HH------HHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCCGGGCCHHHH-HHHHHHHHHHHTSS--CHHHHHHHHHHH
T ss_pred             -HH------HHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCCCccHHHH-HHHHHHHHHHhcCC--ChHHHHHHHHHH
Confidence             11      36888999999988999999999999977665322  12223 35688899999876  567999999999


Q ss_pred             HHHhh
Q 015951          280 GDLAK  284 (397)
Q Consensus       280 ~~L~~  284 (397)
                      ..++.
T Consensus       201 ~~l~~  205 (242)
T 2qk2_A          201 GTLIK  205 (242)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            99986

>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A

Probab=97.65  E-value=0.0034  Score=66.36  Aligned_cols=168  Identities=16%  Similarity=0.037  Sum_probs=127.1

Q ss_pred             CCCHHHHHHHHHHHHhccC-CCCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCcHHHHH
Q 015951          139 TLSLEDSQRALQELLILVE-PIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLM  217 (397)
Q Consensus       139 ~~s~e~k~~AL~~L~~Lve-~iDnA~~~~~lGGl~~Li~lL~s~~~~ir~~Aa~vLg~~aqNNp~~Q~~vl~~g~lp~Ll  217 (397)
                      ..+...|..++..+-++.- ..|.      ..|+..+++++.+++..+|..+.-.+...+..+|+.-..     ++..+.
T Consensus        49 ~~~~~~k~~~l~Kli~l~~~G~d~------s~~~~~vvkl~~s~~~~~Krl~YL~l~~~~~~~~e~~~L-----~iN~l~  117 (621)
T 2vgl_A           49 ALDGYSKKKYVCKLLFIFLLGHDI------DFGHMEAVNLLSSNRYTEKQIGYLFISVLVNSNSELIRL-----INNAIK  117 (621)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHSCCC------CSCHHHHHHGGGCSCHHHHHHHHHHHHHSCCCCHHHHHH-----HHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHcCCCC------chhHHHHHHHhcCCCHHHHHHHHHHHHHHccCCcHHHHH-----HHHHHH
Confidence            3466777777777766431 2221      248999999999999999999999999999988854322     356677


Q ss_pred             HhhcCCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhh--cCCCccHHHHHHHHHHHHHHhhchhccCCCCcc
Q 015951          218 KMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDIL--GNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEP  295 (397)
Q Consensus       218 ~LL~s~~~~v~~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL--~s~~~d~klr~kA~~lL~~L~~~~l~~~~~~~~  295 (397)
                      +=+.++++-+|.-|+.+||++.  .+.-.+     .-.+.+..++  .+.  ++.+|++|+.++..+...     +|+..
T Consensus       118 kDl~~~n~~ir~lALr~L~~i~--~~e~~~-----~l~~~v~~~l~~~d~--~~~VRK~A~~al~kl~~~-----~p~~~  183 (621)
T 2vgl_A          118 NDLASRNPTFMGLALHCIANVG--SREMAE-----AFAGEIPKILVAGDT--MDSVKQSAALCLLRLYRT-----SPDLV  183 (621)
T ss_dssp             HHHHSCCHHHHHHHHHHHHHHC--CHHHHH-----HHTTHHHHHHHCSSS--CHHHHHHHHHHHHHHHHH-----CGGGC
T ss_pred             HhcCCCCHHHHHHHHHHhhccC--CHHHHH-----HHHHHHHHHHhCCCC--CHHHHHHHHHHHHHHHHh-----Chhhc
Confidence            7777888899999999999983  233222     3456777888  544  678999999999999862     33322


Q ss_pred             hhHHhCCcHHHHHHhccCCChHHHHHHHHHHHHHhcCCh
Q 015951          296 PLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLRT  334 (397)
Q Consensus       296 ~~l~~~g~v~~Lv~lL~~~d~dv~E~aL~aL~~L~~~~~  334 (397)
                         ...++++.+..+|...|+.|+..|+.++..+....+
T Consensus       184 ---~~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~  219 (621)
T 2vgl_A          184 ---PMGDWTSRVVHLLNDQHLGVVTAATSLITTLAQKNP  219 (621)
T ss_dssp             ---CCCSCHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCH
T ss_pred             ---CchhHHHHHHHHhCCCCccHHHHHHHHHHHHHHhCh
Confidence               225899999999999999999999999999987653

>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}

Probab=97.63  E-value=0.00066  Score=63.49  Aligned_cols=149  Identities=14%  Similarity=0.200  Sum_probs=118.4

Q ss_pred             CHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHH
Q 015951          170 GLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMF  249 (397)
Q Consensus       170 Gl~~Li~lL~s~~~~ir~~Aa~vLg~~aqNNp~~Q~~vl~~g~lp~Ll~LL~s~~~~v~~kAl~ALS~LiR~~~~~~~~f  249 (397)
                      -+..|+.+|...++.++.+|..+|+.+...-|..-....=...+|.++.++.++++.+..+|+-+|..++.+.|.....|
T Consensus        34 ~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL~~~~y  113 (265)
T 3b2a_A           34 ALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQENEKVTIKALRALGYLVKDVPMGSKTF  113 (265)
T ss_dssp             HHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCBCHHHH
T ss_pred             HHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCCCCHHHH
Confidence            35566778888899999999999999998754444444434589999999999999999999999999999999888888


Q ss_pred             HhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHHhCCcHHHHHHhccCCChHHHHHHHHHHHHH
Q 015951          250 YVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNL  329 (397)
Q Consensus       250 ~~~gGi~~L~~lL~s~~~d~klr~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~dv~E~aL~aL~~L  329 (397)
                      ..  -...|..++.++  +.-++..|+-.+..|--     ..       ...+++..+..++.+.|..++..++.++.++
T Consensus       114 ~K--l~~aL~dlik~~--~~il~~eaae~Lgklkv-----~~-------~~~~V~~~l~sLl~Skd~~vK~agl~~L~ei  177 (265)
T 3b2a_A          114 LK--AAKTLVSLLESP--DDMMRIETIDVLSKLQP-----LE-------DSKLVRTYINELVVSPDLYTKVAGFCLFLNM  177 (265)
T ss_dssp             HH--HHHHHHHHTTSC--CHHHHHHHHHHHHHCCB-----SC-------CCHHHHHHHHHHHTCSSHHHHHHHHHHHHHH
T ss_pred             HH--HHHHHHHHhcCC--CchHHHHHHHHhCcCCc-----cc-------chHHHHHHHHHHHhCCChhHHHHHHHHHHHh
Confidence            64  356778888866  33478888888887721     11       1235677888889999999999999999999


Q ss_pred             hcCCh
Q 015951          330 LQLRT  334 (397)
Q Consensus       330 ~~~~~  334 (397)
                      +..++
T Consensus       178 a~~S~  182 (265)
T 3b2a_A          178 LNSSA  182 (265)
T ss_dssp             GGGCS
T ss_pred             hcccC
Confidence            98653

>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A

Probab=97.61  E-value=0.0011  Score=71.13  Aligned_cols=200  Identities=15%  Similarity=0.085  Sum_probs=134.2

Q ss_pred             HHHHHHHHHHhhCCCCCHHHHHHHHHHHHhccCCCCch--hHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChH
Q 015951          125 AQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNA--NDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPL  202 (397)
Q Consensus       125 ~~lmk~~i~~L~~~~~s~e~k~~AL~~L~~Lve~iDnA--~~~~~lGGl~~Li~lL~s~~~~ir~~Aa~vLg~~aqNNp~  202 (397)
                      ..++..++..+.+++.+.+.+..|+..|..++..+...  .......-++.+..++.++++++|..|+.+++.++...+.
T Consensus       171 ~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~  250 (876)
T 1qgr_A          171 NEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQ  250 (876)
T ss_dssp             HHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSGG
T ss_pred             HHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhHH
Confidence            44556666777766546778888999998877643311  1111111356666778888999999999999999988775


Q ss_pred             HHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhc-----------------HHHHHh---cCcHHHHHHhh
Q 015951          203 VQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAG-----------------QEMFYV---EAGDLMLQDIL  262 (397)
Q Consensus       203 ~Q~~vl~~g~lp~Ll~LL~s~~~~v~~kAl~ALS~LiR~~~~~-----------------~~~f~~---~gGi~~L~~lL  262 (397)
                      .-...+....++.++..+.+.++.++..|+..++.+++.....                 ...+..   ..-++.+...+
T Consensus       251 ~~~~~~~~~l~~~~~~~~~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l  330 (876)
T 1qgr_A          251 YMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTL  330 (876)
T ss_dssp             GCHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHhHhhhhccccccCCCccchhHHHHHHHHHHHhHHHHHHh
Confidence            4333444468899999888888899999999999887642100                 000110   12345566666


Q ss_pred             cCC-----CccHHHHHHHHHHHHHHhhchhccCCCCcchhHHhCCcHHHHHHhccCCChHHHHHHHHHHHHHhcCC
Q 015951          263 GNS-----SFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLR  333 (397)
Q Consensus       263 ~s~-----~~d~klr~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~dv~E~aL~aL~~L~~~~  333 (397)
                      ...     +.+.++|..|+.++..++..-    .+    .+. ..+++.+...+.+++..+++.++.+|..++...
T Consensus       331 ~~~~~d~~~~~~~~r~~a~~~l~~l~~~~----~~----~~~-~~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~  397 (876)
T 1qgr_A          331 TKQDENDDDDDWNPCKAAGVCLMLLATCC----ED----DIV-PHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGP  397 (876)
T ss_dssp             TCCCSSCCTTCCCHHHHHHHHHHHHHHHH----GG----GGH-HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSS
T ss_pred             hcccccccccccHHHHHHHHHHHHHHHHC----cH----hhH-HHHHHHHHHHccCCChHHHHHHHHHHHHHHcCC
Confidence            421     124468889999999988531    11    122 246677777888889999999999999998753

>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}

Probab=97.39  E-value=0.0061  Score=59.73  Aligned_cols=154  Identities=14%  Similarity=0.093  Sum_probs=119.2

Q ss_pred             HHHHhcCCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHHHhc
Q 015951          173 VLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVE  252 (397)
Q Consensus       173 ~Li~lL~s~~~~ir~~Aa~vLg~~aqNNp~~Q~~vl~~g~lp~Ll~LL~s~~~~v~~kAl~ALS~LiR~~~~~~~~f~~~  252 (397)
                      .+++-|.+++..-+..|..-|..+.|..+..-..|++.+|+..|+++..+.+.+.+.-++.|++++.- |..+...++++
T Consensus       122 ~iiekL~~~~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~~~gN~q~Y~L~AL~~LM~-~v~Gm~gvvs~  200 (339)
T 3dad_A          122 AILEKLYSSSGPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAAADHNYQSYILRALGQLML-FVDGMLGVVAH  200 (339)
T ss_dssp             HHHHHHHHCCHHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTTSCHHHHHHHHHHHHHHTT-SHHHHHHHHHC
T ss_pred             HHHHHHhcCCcHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHhcChHHHHHHHHHHHHHHh-ccccccchhCC
Confidence            44555556777788999999999887778888889999999999999999888999999999999864 66777777753


Q ss_pred             -CcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHHh----------CCcHHHHHHhcc---CCChHH
Q 015951          253 -AGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRD----------RFFLKSVVDLTA---SADLDL  318 (397)
Q Consensus       253 -gGi~~L~~lL~s~~~d~klr~kA~~lL~~L~~~~l~~~~~~~~~~l~~----------~g~v~~Lv~lL~---~~d~dv  318 (397)
                       ..+..|..++.+.  +..+.+.|..+|-.++..     .+.....+.+          .-....|+.+|.   +.|.++
T Consensus       201 ~~fI~~lyslv~s~--~~~V~k~AL~LL~v~V~~-----se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~el  273 (339)
T 3dad_A          201 SDTIQWLYTLCASL--SRLVVKTALKLLLVFVEY-----SENNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADPEL  273 (339)
T ss_dssp             HHHHHHHHHGGGCS--CHHHHHHHHHHHHHHHHH-----CGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHH
T ss_pred             HHHHHHHHHHHcCc--cHHHHHHHHHHHHHHHcc-----CcccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHHH
Confidence             5788888888864  667888899999999863     2222222221          124678899997   679999


Q ss_pred             HHHHHHHHHHHhcCCh
Q 015951          319 QEKALAAIKNLLQLRT  334 (397)
Q Consensus       319 ~E~aL~aL~~L~~~~~  334 (397)
                      +-+|+..|-.+....+
T Consensus       274 q~~amtLIN~lL~~ap  289 (339)
T 3dad_A          274 LVYTVTLINKTLAALP  289 (339)
T ss_dssp             HHHHHHHHHHHHHHCS
T ss_pred             HHHHHHHHHHHHhcCC
Confidence            9999988887776644

>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}

Probab=97.38  E-value=0.0087  Score=54.24  Aligned_cols=140  Identities=13%  Similarity=0.158  Sum_probs=104.0

Q ss_pred             CCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHH
Q 015951          179 NHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLML  258 (397)
Q Consensus       179 ~s~~~~ir~~Aa~vLg~~aqNNp~~Q~~vl~~g~lp~Ll~LL~s~~~~v~~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L  258 (397)
                      +|..-++-..-++.+|.++.-+|+.-.     +.+|.|..-..-+++..+..-.|+|.-+.|.||.....+     +.-+
T Consensus        80 ksEaIpltqeIa~a~G~la~i~Pe~v~-----~vVp~lfanyrigd~kikIn~~yaLeeIaranP~l~~~v-----~rdi  149 (253)
T 2db0_A           80 KSEAIPLTQEIAKAFGQMAKEKPELVK-----SMIPVLFANYRIGDEKTKINVSYALEEIAKANPMLMASI-----VRDF  149 (253)
T ss_dssp             HCCSHHHHHHHHHHHHHHHHHCHHHHH-----HHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHCHHHHHHH-----HHHH
T ss_pred             hcccCchHHHHHHHHhHHHHhCHHHHH-----hhHHHHHHHHhcCCccceecHHHHHHHHHHhChHHHHHH-----HHHH
Confidence            455666767778888888888886443     457888888888888999999999999999998755443     3455


Q ss_pred             HHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHHhCCcHHHHHHhccCCChHHHHHHHHHHHHHhcCChHHHH
Q 015951          259 QDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLRTTEAL  338 (397)
Q Consensus       259 ~~lL~s~~~d~klr~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~dv~E~aL~aL~~L~~~~~~~r~  338 (397)
                      ..++.|++.  .=|.-|..+++.|..+        ....+  .-+++.|..+|...|.-++..|..+|.+++..++..|+
T Consensus       150 ~smltskd~--~Dkl~aLnFi~alGen--------~~~yv--~PfLprL~aLL~D~deiVRaSaVEtL~~lA~~npklRk  217 (253)
T 2db0_A          150 MSMLSSKNR--EDKLTALNFIEAMGEN--------SFKYV--NPFLPRIINLLHDGDEIVRASAVEALVHLATLNDKLRK  217 (253)
T ss_dssp             HHHTSCSSH--HHHHHHHHHHHTCCTT--------THHHH--GGGHHHHHGGGGCSSHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred             HHHhcCCCh--HHHHHHHHHHHHHhcc--------Ccccc--CcchHHHHHHHcCcchhhhHHHHHHHHHHHHcCHHHHH
Confidence            667777632  3455676677666432        22222  35789999999999999999999999999998876665


Q ss_pred             HH
Q 015951          339 VL  340 (397)
Q Consensus       339 ~~  340 (397)
                      .+
T Consensus       218 ii  219 (253)
T 2db0_A          218 VV  219 (253)
T ss_dssp             HH
T ss_pred             HH
Confidence            54

>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}

Probab=97.26  E-value=0.016  Score=57.34  Aligned_cols=185  Identities=10%  Similarity=0.069  Sum_probs=131.4

Q ss_pred             CCHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhccC-CCCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCC
Q 015951          122 PSDAQLIQIAIDDLNNSTLSLEDSQRALQELLILVE-PIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNN  200 (397)
Q Consensus       122 ~~d~~lmk~~i~~L~~~~~s~e~k~~AL~~L~~Lve-~iDnA~~~~~lGGl~~Li~lL~s~~~~ir~~Aa~vLg~~aqNN  200 (397)
                      .+....+++ .+.++++..++.-...++..+.++.- -.+.....+ ...+..++.++.+++..+|...--.+-.++..+
T Consensus        22 ~~k~~v~qe-~r~fn~~~~~~~kc~~~l~kll~l~~~G~~f~~~e~-t~lf~~v~kl~~s~d~~lKrLvYLyl~~~~~~~   99 (355)
T 3tjz_B           22 LEKSAVLQE-ARVFNETPINPRKCAHILTKILYLINQGEHLGTTEA-TEAFFAMTKLFQSNDPTLRRMCYLTIKEMSCIA   99 (355)
T ss_dssp             CCHHHHHHH-GGGTTSSSCCHHHHHHHHHHHHHHHHHTCCCCHHHH-HHHHHHHHGGGGCCCHHHHHHHHHHHHHHTTTS
T ss_pred             chHHHHHHH-HHHhcCCCCcHHHHHHHHHHHHHHHHCCCCCchhHH-HHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCH
Confidence            455556666 35666666665544456666666442 222222111 235677788999999999999999999888763


Q ss_pred             hHHHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHH
Q 015951          201 PLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVG  280 (397)
Q Consensus       201 p~~Q~~vl~~g~lp~Ll~LL~s~~~~v~~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klr~kA~~lL~  280 (397)
                         ++.+   =+...|.+=+.++++-+|..|+.+++++.-  +.-.+.     -.+.+.+++.+.  ++.+|++|+.+..
T Consensus       100 ---~e~i---Lv~Nsl~kDl~~~N~~iR~lALRtL~~I~~--~~m~~~-----l~~~lk~~L~d~--~pyVRk~A~l~~~  164 (355)
T 3tjz_B          100 ---EDVI---IVTSSLTKDMTGKEDSYRGPAVRALCQITD--STMLQA-----IERYMKQAIVDK--VPSVSSSALVSSL  164 (355)
T ss_dssp             ---SCGG---GGHHHHHHHHHSSCHHHHHHHHHHHHHHCC--TTTHHH-----HHHHHHHHHTCS--SHHHHHHHHHHHH
T ss_pred             ---HHHH---HHHHHHHhhcCCCcHhHHHHHHHHHhcCCC--HHHHHH-----HHHHHHHHcCCC--CHHHHHHHHHHHH
Confidence               2322   267788888888888899999999999842  232232     345688888887  6679999999999


Q ss_pred             HHhhchhccCCCCcchhHHhCCcHHHHHHhccCCChHHHHHHHHHHHHHhcCC
Q 015951          281 DLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLR  333 (397)
Q Consensus       281 ~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~dv~E~aL~aL~~L~~~~  333 (397)
                      .|..     ..|+    +++ +|+..+-+++...++-++-+|+.+|..+....
T Consensus       165 kL~~-----~~pe----~v~-~~~~~l~~ll~d~n~~V~~~Al~lL~ei~~~d  207 (355)
T 3tjz_B          165 HLLK-----CSFD----VVK-RWVNEAQEAASSDNIMVQYHALGLLYHVRKND  207 (355)
T ss_dssp             HHTT-----TCHH----HHH-TTHHHHHHHTTCSSHHHHHHHHHHHHHHHTTC
T ss_pred             HHhc-----cCHH----HHH-HHHHHHHHHhcCCCccHHHHHHHHHHHHHhhc
Confidence            9974     1222    333 68999999999999999999999999988754

>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}

Probab=97.20  E-value=0.0084  Score=56.31  Aligned_cols=181  Identities=12%  Similarity=0.016  Sum_probs=118.7

Q ss_pred             CHHHHHHHHHHHHhccCCCC--ch--hHHHhcCCHHHHH-HhcCCCCHHHHHHHHHHHHHHhcCChH-----HHHHHHHc
Q 015951          141 SLEDSQRALQELLILVEPID--NA--NDLSKLGGLSVLV-GQLNHPDTDIRKISAWILGKASQNNPL-----VQKQVLEL  210 (397)
Q Consensus       141 s~e~k~~AL~~L~~Lve~iD--nA--~~~~~lGGl~~Li-~lL~s~~~~ir~~Aa~vLg~~aqNNp~-----~Q~~vl~~  210 (397)
                      .=..|..|++.|..++....  ..  ..+...+.+..++ ..+..+|..++..|+.+|..++..-..     ......-.
T Consensus        22 ~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~~~~~~~~~~~~  101 (278)
T 4ffb_C           22 LWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNSLIDAFASSSLKNAHNITLIS  101 (278)
T ss_dssp             SHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC---CCHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhcccchhHHHHH
Confidence            45678899999988775432  11  1222345544444 678899999999999999999864221     11112223


Q ss_pred             CcHHHHHH-hhcCCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhcc
Q 015951          211 GALSKLMK-MVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLEN  289 (397)
Q Consensus       211 g~lp~Ll~-LL~s~~~~v~~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klr~kA~~lL~~L~~~~l~~  289 (397)
                      ..+|.|+. .+.+....++..|+.++..++....+... +     ++.+...+++.  +++++..++..|..+..+.   
T Consensus       102 ~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~~~-~-----~e~l~~~l~~K--npkv~~~~l~~l~~~l~~f---  170 (278)
T 4ffb_C          102 TWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTSITQ-S-----VELVIPFFEKK--LPKLIAAAANCVYELMAAF---  170 (278)
T ss_dssp             HHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSSSHH-H-----HHHHGGGGGCS--CHHHHHHHHHHHHHHHHHH---
T ss_pred             HHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCcHHH-H-----HHHHHHHHhcc--CHHHHHHHHHHHHHHHHHh---
Confidence            46888885 57787888898998888877654322211 1     35566667776  6789999999999887632   


Q ss_pred             CCCCcchhHHhCCcHHHHHHhccCCChHHHHHHHHHHHHHhcC
Q 015951          290 MHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQL  332 (397)
Q Consensus       290 ~~~~~~~~l~~~g~v~~Lv~lL~~~d~dv~E~aL~aL~~L~~~  332 (397)
                      +.........-..+++.+..++.+.|.+||+.|..++..+...
T Consensus       171 g~~~~~~k~~l~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~~  213 (278)
T 4ffb_C          171 GLTNVNVQTFLPELLKHVPQLAGHGDRNVRSQTMNLIVEIYKV  213 (278)
T ss_dssp             TTTTCCHHHHHHHHGGGHHHHHTCSSHHHHHHHHHHHHHHHTC
T ss_pred             CCCcCCchhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHH
Confidence            1111111111124566778889999999999999999998865

>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A

Probab=97.08  E-value=0.0029  Score=66.91  Aligned_cols=111  Identities=14%  Similarity=0.120  Sum_probs=81.6

Q ss_pred             CHHHHHHHHHH----HhhCCCCCHHHHHHHHHHHHhccCCCCchhHHHhcCCHHHHHHhc--CCCCHHHHHHHHHHHHHH
Q 015951          123 SDAQLIQIAID----DLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQL--NHPDTDIRKISAWILGKA  196 (397)
Q Consensus       123 ~d~~lmk~~i~----~L~~~~~s~e~k~~AL~~L~~Lve~iDnA~~~~~lGGl~~Li~lL--~s~~~~ir~~Aa~vLg~~  196 (397)
                      .+.+.+.-++.    .+.++  ++-.+..||..|..+.. .+.+.     ...+.+.++|  .++++-||..|+-++.++
T Consensus       104 ~~~e~~~L~iN~l~kDl~~~--n~~ir~lALr~L~~i~~-~e~~~-----~l~~~v~~~l~~~d~~~~VRK~A~~al~kl  175 (621)
T 2vgl_A          104 SNSELIRLINNAIKNDLASR--NPTFMGLALHCIANVGS-REMAE-----AFAGEIPKILVAGDTMDSVKQSAALCLLRL  175 (621)
T ss_dssp             CCHHHHHHHHHHHHHHHHSC--CHHHHHHHHHHHHHHCC-HHHHH-----HHTTHHHHHHHCSSSCHHHHHHHHHHHHHH
T ss_pred             CCcHHHHHHHHHHHHhcCCC--CHHHHHHHHHHhhccCC-HHHHH-----HHHHHHHHHHhCCCCCHHHHHHHHHHHHHH
Confidence            34454444443    34433  45567778888887643 22222     2457778899  889999999999999999


Q ss_pred             hcCChHHHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChh
Q 015951          197 SQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLA  244 (397)
Q Consensus       197 aqNNp~~Q~~vl~~g~lp~Ll~LL~s~~~~v~~kAl~ALS~LiR~~~~  244 (397)
                      .+.+|..-.   ..++++.|.++|.+.++.|+..|+.++..++.+++.
T Consensus       176 ~~~~p~~~~---~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~~  220 (621)
T 2vgl_A          176 YRTSPDLVP---MGDWTSRVVHLLNDQHLGVVTAATSLITTLAQKNPE  220 (621)
T ss_dssp             HHHCGGGCC---CCSCHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCHH
T ss_pred             HHhChhhcC---chhHHHHHHHHhCCCCccHHHHHHHHHHHHHHhChH
Confidence            998875332   247899999999988899999999999999887765

>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}

Probab=97.06  E-value=0.011  Score=55.04  Aligned_cols=172  Identities=10%  Similarity=0.121  Sum_probs=117.7

Q ss_pred             HhHHHHHHHHH-hcCC-------CCH-HHHHHHHHHHh-hCCCCCHHHHHHHHHHHHhccCCCC--chh-HHHhcCCHHH
Q 015951          107 KRQMEIKELME-KLKT-------PSD-AQLIQIAIDDL-NNSTLSLEDSQRALQELLILVEPID--NAN-DLSKLGGLSV  173 (397)
Q Consensus       107 ~r~~~L~ea~~-~~~~-------~~d-~~lmk~~i~~L-~~~~~s~e~k~~AL~~L~~Lve~iD--nA~-~~~~lGGl~~  173 (397)
                      +|++-+.+... .+.+       ..+ .+++..+...+ .++  ....+..|+..|..+++...  .-. .+.. -.+|+
T Consensus        32 eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~--n~~v~~~A~~al~~la~~l~~~~f~~~y~~-~llp~  108 (249)
T 2qk1_A           32 DRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDA--NIQAVALAAQSVELICDKLKTPGFSKDYVS-LVFTP  108 (249)
T ss_dssp             HHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCS--CHHHHHHHHHHHHHHHHHHCTTTSCHHHHH-HHHHH
T ss_pred             HHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCC--CHHHHHHHHHHHHHHHHhcccccccHHHHH-HHHHH
Confidence            46666666555 3321       223 45666666777 343  45567788888888775332  111 2222 25889


Q ss_pred             HHHhcCCCCHHHHHHHHHHHHHHhcCChHHHHHH-HHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHH---
Q 015951          174 LVGQLNHPDTDIRKISAWILGKASQNNPLVQKQV-LELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMF---  249 (397)
Q Consensus       174 Li~lL~s~~~~ir~~Aa~vLg~~aqNNp~~Q~~v-l~~g~lp~Ll~LL~s~~~~v~~kAl~ALS~LiR~~~~~~~~f---  249 (397)
                      ++..+....+.||..|..++-+++.+-+.....- ++ ..++.|+..+++.+..+|..++..|+.++...+.....|   
T Consensus       109 ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~-~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~~~~~~~~l~~~  187 (249)
T 2qk1_A          109 LLDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNE-DMLKDILEHMKHKTPQIRMECTQLFNASMKEEKDGYSTLQRY  187 (249)
T ss_dssp             HHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTH-HHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCCSCSHHHHHH
T ss_pred             HHHHHcCCCHHHHHHHHHHHHHHHHHccccccCCcHH-HHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCcchhHHHH
Confidence            9999999999999999999999987531111000 11 267889999999889999999999999998766432233   


Q ss_pred             HhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhh
Q 015951          250 YVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAK  284 (397)
Q Consensus       250 ~~~gGi~~L~~lL~s~~~d~klr~kA~~lL~~L~~  284 (397)
                      +.-.-++.|..++.+.  +..+|..|..++..++.
T Consensus       188 l~~~iip~l~~~l~D~--~~~VR~aA~~~l~~i~~  220 (249)
T 2qk1_A          188 LKDEVVPIVIQIVNDT--QPAIRTIGFESFAILIK  220 (249)
T ss_dssp             HTTTHHHHHHHHHTCS--SHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCC--CHHHHHHHHHHHHHHHH
Confidence            2246788999999876  66799999999999985

>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*

Probab=96.93  E-value=0.046  Score=54.48  Aligned_cols=167  Identities=17%  Similarity=0.120  Sum_probs=115.4

Q ss_pred             HHHHHHHHhcc--CCCCchhHHHhcCCHHHHHHhcC-----------CCCHHHHHHHHHHHHHHhcCChHHHHHHHH-cC
Q 015951          146 QRALQELLILV--EPIDNANDLSKLGGLSVLVGQLN-----------HPDTDIRKISAWILGKASQNNPLVQKQVLE-LG  211 (397)
Q Consensus       146 ~~AL~~L~~Lv--e~iDnA~~~~~lGGl~~Li~lL~-----------s~~~~ir~~Aa~vLg~~aqNNp~~Q~~vl~-~g  211 (397)
                      ...|+.|.-.+  .+++.-..|+ .+|+..|+..|.           ..+..++.....||..+. ||..--..++. ..
T Consensus        85 ~~~L~sL~v~Lrt~~~sWV~~F~-~~Gl~~Ll~iL~~~~~~~~~~~~~~d~~~q~~~l~CLkalm-N~~~G~~~vl~~~~  162 (383)
T 3eg5_B           85 LSCLESLRVSLTSHPVSWVQTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFM-NNKFGIKTMLETEE  162 (383)
T ss_dssp             HHHHHHHHHHHHHSCHHHHHHHH-HHHHHHHHHHHHHHHTCC-------CHHHHHHHHHHHHHHT-SSHHHHHHHHTCSS
T ss_pred             HHHHHHHHHHHhhCccHHHHHHH-HccHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHh-cchhhHHHHHcChH
Confidence            34567776644  4567778998 899999998874           124578889999999998 55555555554 56


Q ss_pred             cHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCh-hc-HHHHH----------hcCcHHHHHHhhcCCCccHHHHHHHHHHH
Q 015951          212 ALSKLMKMVKSSFVEEAVKALYTVSSLIRNNL-AG-QEMFY----------VEAGDLMLQDILGNSSFEIRLHRKAVSLV  279 (397)
Q Consensus       212 ~lp~Ll~LL~s~~~~v~~kAl~ALS~LiR~~~-~~-~~~f~----------~~gGi~~L~~lL~s~~~d~klr~kA~~lL  279 (397)
                      ++..|...+.+....++..|+--|+.++.... .+ ...++          +..-+..++..|.+. .+..++..++.+|
T Consensus       163 ~i~~l~~~L~s~~~~~~~~aleLL~~lc~~~~~~gG~~~VL~Al~~~~~~~e~~RF~~lv~~L~~~-~~~e~~~~~m~lI  241 (383)
T 3eg5_B          163 GILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSG-TSIALKVGCLQLI  241 (383)
T ss_dssp             HHHHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTT-SCHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCCchHHHHHHHHHHHHHHhCcCcCCcHHHHHHHHHHHHHhCCCCcHHHHHHHHHcc-CcHHHHHHHHHHH
Confidence            89999999999888888888888877665432 22 22222          234588889999864 3667888999999


Q ss_pred             HHHhhchhccCCCC------cchhHHhCCcHHHHHHhccCCChHHHH
Q 015951          280 GDLAKCQLENMHKV------EPPLFRDRFFLKSVVDLTASADLDLQE  320 (397)
Q Consensus       280 ~~L~~~~l~~~~~~------~~~~l~~~g~v~~Lv~lL~~~d~dv~E  320 (397)
                      ..++.+     .++      .+..|...|+.+.+..+=...++++..
T Consensus       242 N~li~~-----~~dl~~R~~lR~ef~~~Gl~~il~~lr~~~~~~L~~  283 (383)
T 3eg5_B          242 NALITP-----AEELDFRVHIRSELMRLGLHQVLQELREIENEDMKV  283 (383)
T ss_dssp             HHHHTT-----CCCHHHHHHHHHHHHHTTHHHHHHHHTTSCCHHHHH
T ss_pred             HHHHcC-----CCCHHHHHHHHHHHHHCChHHHHHHHhcCCChhHHH
Confidence            999863     232      345567788887777643334544443

>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9

Probab=96.78  E-value=0.059  Score=55.14  Aligned_cols=242  Identities=13%  Similarity=0.104  Sum_probs=141.1

Q ss_pred             HHHHHHHHHhhCCCCCHHHHHHHHHHHHhccCCC----CchhHHHhcCCHH-HHH-HhcCCCCHHHHHHHHHHHHHHhcC
Q 015951          126 QLIQIAIDDLNNSTLSLEDSQRALQELLILVEPI----DNANDLSKLGGLS-VLV-GQLNHPDTDIRKISAWILGKASQN  199 (397)
Q Consensus       126 ~lmk~~i~~L~~~~~s~e~k~~AL~~L~~Lve~i----DnA~~~~~lGGl~-~Li-~lL~s~~~~ir~~Aa~vLg~~aqN  199 (397)
                      ...+-.+..+.... ..+-..-.|--+.+++...    ..+.-|++..... .+. .++..+++-..-.|+.+++-++++
T Consensus        77 ~~~~~~l~lL~~~~-~~d~vqYvL~Li~DlL~~~~~~~~~~~~f~~~~~~~~~l~~~~~~~dd~~~ll~a~~l~~ll~~~  155 (480)
T 1ho8_A           77 KTLIPLIHLLSTSD-NEDCKKSVQNLIAELLSSDKYGDDTVKFFQEDPKQLEQLFDVSLKGDFQTVLISGFNVVSLLVQN  155 (480)
T ss_dssp             TTHHHHHHHHHSCC-CHHHHHHHHHHHHHHHHCSSSSHHHHHHHHHCTTHHHHHHHHCSCSSHHHHHHHHHHHHHHHTST
T ss_pred             hHHHHHHHHHhhcC-hHHHHHHHHHHHHHHHhcCcchHHHHHHHhhCcccchHHHHHHhcccchHHHHHHHHHHHHHhcc
Confidence            34566777776643 4455666676666766542    2234555554332 233 455555666677888888888776


Q ss_pred             ChHHHHHHHHcCcHH--HHHHhhcC-CCHHHHHHHHHHHHHHhcCChhcHHHHHhcCc--HHHHHHhhc----C------
Q 015951          200 NPLVQKQVLELGALS--KLMKMVKS-SFVEEAVKALYTVSSLIRNNLAGQEMFYVEAG--DLMLQDILG----N------  264 (397)
Q Consensus       200 Np~~Q~~vl~~g~lp--~Ll~LL~s-~~~~v~~kAl~ALS~LiR~~~~~~~~f~~~gG--i~~L~~lL~----s------  264 (397)
                      ++...+..-.  .+.  -++..|.+ ++...+--++.+++.++|. +..+..|.+++|  ++.+..++.    +      
T Consensus       156 ~~~~~~~l~~--l~~~~~~~~~L~~~~~~~~~~i~v~~L~~Ll~~-~~~R~~f~~~~~~~~~~l~~il~~~~~~~~~~~~  232 (480)
T 1ho8_A          156 GLHNVKLVEK--LLKNNNLINILQNIEQMDTCYVCIRLLQELAVI-PEYRDVIWLHEKKFMPTLFKILQRATDSQLATRI  232 (480)
T ss_dssp             TTCCHHHHHH--HHHCHHHHHHHHCTTCHHHHHHHHHHHHHHHTS-HHHHHHHHTTHHHHHHHHHHHHHHHHC-------
T ss_pred             CCccHhHHHH--HhhhHHHHHHhccccCCchHHHHHHHHHHHhcc-hhHHHHHHHcccchhHHHHHHHHHhhcccccccc
Confidence            6543222111  122  34445554 2344455788899999885 566788888766  445543322    1      


Q ss_pred             -----CCccHHHHHHHHHHHHHHhhchhccCCCCcchhHHhCCcH--HHHHHhccC-CChHHHHHHHHHHHHHhcCChHH
Q 015951          265 -----SSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFL--KSVVDLTAS-ADLDLQEKALAAIKNLLQLRTTE  336 (397)
Q Consensus       265 -----~~~d~klr~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~v--~~Lv~lL~~-~d~dv~E~aL~aL~~L~~~~~~~  336 (397)
                           ++....++-.++++++-|+.      ++...+.+...++.  ..|+..++. .-..+..-++.++.||...+...
T Consensus       233 ~~~~~~~~~~Ql~Y~~ll~iWlLSF------~~~~~~~l~~~~i~~~~~L~~i~k~s~KEKvvRv~la~l~Nll~~~~~~  306 (480)
T 1ho8_A          233 VATNSNHLGIQLQYHSLLLIWLLTF------NPVFANELVQKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRVKQ  306 (480)
T ss_dssp             ------CCHHHHHHHHHHHHHHHTT------SHHHHHHHHTTSHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSSSTT
T ss_pred             ccccCCCccHHHHHHHHHHHHHHHc------CHHHHHHHHhcchHHHHHHHHHHHhhccchhHHHHHHHHHHHhcccchh
Confidence                 11246678999999998886      34566667777654  566666654 36788889999999999875211


Q ss_pred             -----HHHHHhcCChHHHHHHHHHHhHHhhhhhhhhhhHHhHHHHHHHHHHHH
Q 015951          337 -----ALVLKDFCGLDTALERLRQQLQEVMLEEDQRDYAMDVEALRREVELIF  384 (397)
Q Consensus       337 -----r~~~~~~~gL~~~L~~Lr~~~~~l~~~e~~~~~~~~l~~~~~e~~~~~  384 (397)
                           ++.+- .+++.+.+..|..+   -..|+   |-.+|++.|.+..+..+
T Consensus       307 ~~~~~~~~~~-~~~~l~~l~~L~~r---k~~De---dl~edl~~L~e~L~~~~  352 (480)
T 1ho8_A          307 HKKVIKQLLL-LGNALPTVQSLSER---KYSDE---ELRQDISNLKEILENEY  352 (480)
T ss_dssp             HHHHHHHHHH-HHCHHHHHHHHHSS---CCSSH---HHHHHHHHHHHHHHHHH
T ss_pred             hhhHHHHHHH-HccchHHHHHHhhC---CCCcH---HHHHHHHHHHHHHHHHH
Confidence                 11221 23444555544333   22333   34556666666665554

>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}

Probab=96.58  E-value=0.03  Score=52.89  Aligned_cols=207  Identities=15%  Similarity=0.112  Sum_probs=135.9

Q ss_pred             HHHHHHHHHhhCCCCCHHHHHHHHHHHHhccCCCC-chhHHHh-cCCHHHHHHh-------cCCCC-----HHHHHHHHH
Q 015951          126 QLIQIAIDDLNNSTLSLEDSQRALQELLILVEPID-NANDLSK-LGGLSVLVGQ-------LNHPD-----TDIRKISAW  191 (397)
Q Consensus       126 ~lmk~~i~~L~~~~~s~e~k~~AL~~L~~Lve~iD-nA~~~~~-lGGl~~Li~l-------L~s~~-----~~ir~~Aa~  191 (397)
                      +.|.+.+..|.++    +.|+.|+.+|..--++.+ .|-.+-. -|-+..|++-       |+.+.     ..=-++|..
T Consensus         3 ~~i~qli~~L~~p----~~Re~AL~eLsk~Re~~~~La~~LW~S~Gtia~LLQEIisiYp~lspp~Lt~~~SnRVcnaLa   78 (268)
T 2fv2_A            3 EKIYQWINELSSP----ETRENALLELSKKRESVPDLAPMLWHSFGTIAALLQEIVNIYPSINPPTLTAHQSNRVCNALA   78 (268)
T ss_dssp             HHHHHHHHHTSST----TTHHHHHHHHHHHTTTCTTHHHHHHHSTTHHHHHHHHHHHTGGGBTTBCCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCc----hhHHHHHHHHHHhhhccccHHHHHHhccCHHHHHHHHHHHHcccCCCcccCHHHHhHHHHHHH
Confidence            4566777777766    469999999998777653 4444433 4556666542       22221     122356666


Q ss_pred             HHHHHhcCChHHHHHHHHcCcHHHHHHhhcCCC-----HHHHHHHHHHHHHHhcCC-hhcHHHHHhcCcHHHHHHhhcCC
Q 015951          192 ILGKASQNNPLVQKQVLELGALSKLMKMVKSSF-----VEEAVKALYTVSSLIRNN-LAGQEMFYVEAGDLMLQDILGNS  265 (397)
Q Consensus       192 vLg~~aqNNp~~Q~~vl~~g~lp~Ll~LL~s~~-----~~v~~kAl~ALS~LiR~~-~~~~~~f~~~gGi~~L~~lL~s~  265 (397)
                      .+..+|+ +|+.+..|++.+..-.|.-+|+..+     +-+|-.+++-|+++++.. +....-+.+.+-++...+.+..+
T Consensus        79 LlQcvAs-hpetr~~Fl~a~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiiplCLrime~G  157 (268)
T 2fv2_A           79 LLQCVAS-HPETRSAFLAAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCLRIMESG  157 (268)
T ss_dssp             HHHHHHH-CTTTHHHHHHTTGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHHHHHHHHHS
T ss_pred             HHHHHHc-CcchhhHHHHccchHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHHHHHHHhhhHHHHHHHHHhhc
Confidence            6777775 7899999999987666666676544     246889999999999875 44455556788999999999977


Q ss_pred             CccHHHHHHHHHHHHHHhhch--hccCCCCcchhHHh-CCcHHHHHH-hccCCChHHHHHHHHHHHHHhcCChHHHHHHH
Q 015951          266 SFEIRLHRKAVSLVGDLAKCQ--LENMHKVEPPLFRD-RFFLKSVVD-LTASADLDLQEKALAAIKNLLQLRTTEALVLK  341 (397)
Q Consensus       266 ~~d~klr~kA~~lL~~L~~~~--l~~~~~~~~~~l~~-~g~v~~Lv~-lL~~~d~dv~E~aL~aL~~L~~~~~~~r~~~~  341 (397)
                        +.-.|.-|+|.+..+....  +. .--...+.|.. ..++..+|. +...+++.+..++.+|-..|+.+.. .|..++
T Consensus       158 --selSKtvAtfIlqKIL~dd~GL~-YiC~t~eRF~av~~vL~~mV~~l~~~ps~RLLKhiircYlRLsdn~r-ar~aL~  233 (268)
T 2fv2_A          158 --SELSKTVATFILQKILLDDTGLA-YICQTYERFSHVAMILGKMVLQLSKEPSARLLKHVVRCYLRLSDNPR-AREALR  233 (268)
T ss_dssp             --CHHHHHHHHHHHHHHHHSHHHHH-HHTSSHHHHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTSHH-HHHHHH
T ss_pred             --cHHHHHHHHHHHHHHhccchhHH-HHHccHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCHH-HHHHHH
Confidence              3457889999999887631  00 00011122211 123333333 4456789999999999999997743 555554

>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}

Probab=96.16  E-value=0.087  Score=49.99  Aligned_cols=168  Identities=11%  Similarity=0.042  Sum_probs=112.0

Q ss_pred             CHHHHHHHHHHHHhccCCCCchhHHHhcCCHHHHHHhc----CCCCHHHHHHHHHHHHHHhcC----ChHHHHHHHHcCc
Q 015951          141 SLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQL----NHPDTDIRKISAWILGKASQN----NPLVQKQVLELGA  212 (397)
Q Consensus       141 s~e~k~~AL~~L~~Lve~iDnA~~~~~lGGl~~Li~lL----~s~~~~ir~~Aa~vLg~~aqN----Np~~Q~~vl~~g~  212 (397)
                      +...+..|++.|...+++.  ...+.  .-+..++..+    .++++.+-..+..+|..+...    +....+.-. .-.
T Consensus        59 d~k~~~~ale~L~~~l~~~--~~~~~--~~lDll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y~~~~~ea-~~~  133 (266)
T 2of3_A           59 DFKQHLAALDSLVRLADTS--PRSLL--SNSDLLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTETPMSQEEV-SAF  133 (266)
T ss_dssp             CHHHHHHHHHHHHHHHHHC--HHHHH--HTHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTCCCCHHHH-HHH
T ss_pred             CHHHHHHHHHHHHHHhhhC--hHHHH--HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhccccchHHHH-HHH
Confidence            5678888999998876532  12211  1233333332    367999999999998887532    111111111 126


Q ss_pred             HHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCC
Q 015951          213 LSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHK  292 (397)
Q Consensus       213 lp~Ll~LL~s~~~~v~~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klr~kA~~lL~~L~~~~l~~~~~  292 (397)
                      +|.|+.-+-+..+.+|.++-..+-.+..-+|+.  .     -++.+...++++  +.|.|..++..+.++....    +.
T Consensus       134 lP~LveKlGd~k~~vR~~~r~il~~l~~v~~~~--~-----v~~~l~~g~ksK--N~R~R~e~l~~l~~li~~~----G~  200 (266)
T 2of3_A          134 VPYLLLKTGEAKDNMRTSVRDIVNVLSDVVGPL--K-----MTPMLLDALKSK--NARQRSECLLVIEYYITNA----GI  200 (266)
T ss_dssp             HHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCHH--H-----HHHHHHHGGGCS--CHHHHHHHHHHHHHHHHHH----CS
T ss_pred             HHHHHHHhCCChHHHHHHHHHHHHHHHHHCCHH--H-----HHHHHHHHHccC--CHHHHHHHHHHHHHHHHhc----CC
Confidence            899999888888888877666555444323332  1     234567778877  5789999999999998642    11


Q ss_pred             CcchhHHhCCcH---HHHHHhccCCChHHHHHHHHHHHHHhcC
Q 015951          293 VEPPLFRDRFFL---KSVVDLTASADLDLQEKALAAIKNLLQL  332 (397)
Q Consensus       293 ~~~~~l~~~g~v---~~Lv~lL~~~d~dv~E~aL~aL~~L~~~  332 (397)
                      .      -...+   +.+..++...|..||+.|+.++..+-..
T Consensus       201 ~------~~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y~~  237 (266)
T 2of3_A          201 S------PLKSLSVEKTVAPFVGDKDVNVRNAAINVLVACFKF  237 (266)
T ss_dssp             G------GGGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHHHH
T ss_pred             C------ccccccchHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence            1      13467   9999999999999999999999987765

>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}

Probab=95.96  E-value=0.27  Score=44.61  Aligned_cols=201  Identities=17%  Similarity=0.196  Sum_probs=131.1

Q ss_pred             HHHHHHHHHhcCCCCHHHHHHHHHHHhhCCCCC-HHHHHHHHHHHHhcc---CCCCchhHHHh----c---------CCH
Q 015951          109 QMEIKELMEKLKTPSDAQLIQIAIDDLNNSTLS-LEDSQRALQELLILV---EPIDNANDLSK----L---------GGL  171 (397)
Q Consensus       109 ~~~L~ea~~~~~~~~d~~lmk~~i~~L~~~~~s-~e~k~~AL~~L~~Lv---e~iDnA~~~~~----l---------GGl  171 (397)
                      .++|++.+..+ -.|-+..-|.++.++.+-..+ ++-...++..|--++   |.|+-...+.+    +         +.+
T Consensus        31 ~~~l~~lI~~L-DDDlwtV~kNAl~vi~~i~~~~~el~epl~~kL~vm~~ksEaIpltqeIa~a~G~la~i~Pe~v~~vV  109 (253)
T 2db0_A           31 ESVLKKLIELL-DDDLWTVVKNAISIIMVIAKTREDLYEPMLKKLFSLLKKSEAIPLTQEIAKAFGQMAKEKPELVKSMI  109 (253)
T ss_dssp             HHHHHHHHHHT-TCSCHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred             HHHHHHHHHHh-ccHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHHHHhhcccCchHHHHHHHHhHHHHhCHHHHHhhH
Confidence            45566666543 223345556666665443211 233333444443332   33333222211    1         234


Q ss_pred             HHHHHhcCCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHHHh
Q 015951          172 SVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYV  251 (397)
Q Consensus       172 ~~Li~lL~s~~~~ir~~Aa~vLg~~aqNNp~~Q~~vl~~g~lp~Ll~LL~s~~~~v~~kAl~ALS~LiR~~~~~~~~f~~  251 (397)
                      |.+..-+.-.++.+|..-..+|+.++.+||..--     +.+.-+..|+.|.+..-+..|+.-|+.+--+++.....   
T Consensus       110 p~lfanyrigd~kikIn~~yaLeeIaranP~l~~-----~v~rdi~smltskd~~Dkl~aLnFi~alGen~~~yv~P---  181 (253)
T 2db0_A          110 PVLFANYRIGDEKTKINVSYALEEIAKANPMLMA-----SIVRDFMSMLSSKNREDKLTALNFIEAMGENSFKYVNP---  181 (253)
T ss_dssp             HHHHHHSCCCSHHHHHHHHHHHHHHHHHCHHHHH-----HHHHHHHHHTSCSSHHHHHHHHHHHHTCCTTTHHHHGG---
T ss_pred             HHHHHHHhcCCccceecHHHHHHHHHHhChHHHH-----HHHHHHHHHhcCCChHHHHHHHHHHHHHhccCccccCc---
Confidence            4444555668999999999999999999997654     34567889999888777889999999886666554444   


Q ss_pred             cCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHHhCCcHHHHHHhccCCChHHHHHHHHHHHHHhc
Q 015951          252 EAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQ  331 (397)
Q Consensus       252 ~gGi~~L~~lL~s~~~d~klr~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~dv~E~aL~aL~~L~~  331 (397)
                        =++.|..+|.++  +.-+|.-|+-.|.+++.     .++..+..      +..-++-++.....++.++-.+|..|+-
T Consensus       182 --fLprL~aLL~D~--deiVRaSaVEtL~~lA~-----~npklRki------i~~kl~e~~D~S~lv~~~V~egL~rl~l  246 (253)
T 2db0_A          182 --FLPRIINLLHDG--DEIVRASAVEALVHLAT-----LNDKLRKV------VIKRLEELNDTSSLVNKTVKEGISRLLL  246 (253)
T ss_dssp             --GHHHHHGGGGCS--SHHHHHHHHHHHHHHHT-----SCHHHHHH------HHHHHHHCCCSCHHHHHHHHHHHHHHHH
T ss_pred             --chHHHHHHHcCc--chhhhHHHHHHHHHHHH-----cCHHHHHH------HHHHHHHhcCcHHHHHHHHHHHHHHHHH
Confidence              468899999987  55699999999999995     34444433      3344555677778899999999988875


Q ss_pred             CC
Q 015951          332 LR  333 (397)
Q Consensus       332 ~~  333 (397)
                      ..
T Consensus       247 ~e  248 (253)
T 2db0_A          247 LE  248 (253)
T ss_dssp             C-
T ss_pred             Hh
Confidence            53

>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}

Probab=95.96  E-value=0.14  Score=47.34  Aligned_cols=133  Identities=20%  Similarity=0.171  Sum_probs=89.1

Q ss_pred             HHHHHhcc--CCCCchhHHHhcCCHHHHHHhcCC----C-------CHHHHHHHHHHHHHHhcCChHHHHHHHH-cCcHH
Q 015951          149 LQELLILV--EPIDNANDLSKLGGLSVLVGQLNH----P-------DTDIRKISAWILGKASQNNPLVQKQVLE-LGALS  214 (397)
Q Consensus       149 L~~L~~Lv--e~iDnA~~~~~lGGl~~Li~lL~s----~-------~~~ir~~Aa~vLg~~aqNNp~~Q~~vl~-~g~lp  214 (397)
                      |..|.-.+  ++++....| ..||+..|+.+|..    +       +..++.....||..+. ||..--+.++. .+++.
T Consensus        22 L~~L~v~Lrt~~~~Wv~~F-~~~Gl~~L~~~L~~~~~~~~~~~~~~~~~~~~~~l~CLkalm-n~~~G~~~vl~~~~~i~   99 (233)
T 2f31_A           22 LESLRVSLNNNPVSWVQTF-GAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFM-NNKFGIKTMLETEEGIL   99 (233)
T ss_dssp             HHHHHHHHHHSCHHHHHHH-HHHHHHHHHHHHHHHHTCC-----CCHHHHHHHHHHHHHHHT-SSHHHHHHHHTSSSHHH
T ss_pred             HHHHhHhHhcCCcHHHHHH-HHhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHh-CChHHHHHHHcCcHHHH
Confidence            44444333  456777888 57999999988742    1       4577889999999988 55555555554 56899


Q ss_pred             HHHHhhcCCCHHHHHHHHHHHHHHhcCCh-hc-HHHHH----------hcCcHHHHHHhhcCCCccHHHHHHHHHHHHHH
Q 015951          215 KLMKMVKSSFVEEAVKALYTVSSLIRNNL-AG-QEMFY----------VEAGDLMLQDILGNSSFEIRLHRKAVSLVGDL  282 (397)
Q Consensus       215 ~Ll~LL~s~~~~v~~kAl~ALS~LiR~~~-~~-~~~f~----------~~gGi~~L~~lL~s~~~d~klr~kA~~lL~~L  282 (397)
                      .|...|.+....++..++--|+.++.... .+ ...++          +..-+..++..+.+. .+..++..++.++..+
T Consensus       100 ~l~~~L~s~~~~~r~~~leLL~~lc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~-~~~e~~~~~m~lIN~l  178 (233)
T 2f31_A          100 LLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSG-TSIALKVGCLQLINAL  178 (233)
T ss_dssp             HHHTTCCTTSHHHHHHHHHHHHHHHTCSSSSCHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTT-SCHHHHHHHHHHHHHH
T ss_pred             HHHHHhCCCCchHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHHhCCcchHHHHHHHHhcC-ChHHHHHHHHHHHHHH
Confidence            99999998888888887766666554332 23 22221          223466677777653 3566777888888887


Q ss_pred             hh
Q 015951          283 AK  284 (397)
Q Consensus       283 ~~  284 (397)
                      +.
T Consensus       179 i~  180 (233)
T 2f31_A          179 IT  180 (233)
T ss_dssp             HT
T ss_pred             HC
Confidence            75

>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*

Probab=95.45  E-value=0.71  Score=51.30  Aligned_cols=112  Identities=13%  Similarity=0.026  Sum_probs=79.1

Q ss_pred             CCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhccCCCCchhHHHhcCCHHHHHHhcCCC---CHHHHHHHHHHHHHHh
Q 015951          121 TPSDAQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHP---DTDIRKISAWILGKAS  197 (397)
Q Consensus       121 ~~~d~~lmk~~i~~L~~~~~s~e~k~~AL~~L~~Lve~iDnA~~~~~lGGl~~Li~lL~s~---~~~ir~~Aa~vLg~~a  197 (397)
                      +|.+++.+.++++..-++..+++.|..|.+-|..+=++.         ++|.....+|.++   ++.+|..|+.+|-+..
T Consensus         1 ~~m~~~~v~~Al~~~~~p~sd~~~r~~A~~~L~~~q~sp---------~aw~~~~~iL~~~~~~~~~vr~fa~~~L~~~I   71 (980)
T 3ibv_A            1 GPMSAQDVENAVEAALDPSVGPIIKQQATDFIGSLRSSS---------TGWKICHEIFSEKTKYKPSTRLICLQTLSEKV   71 (980)
T ss_dssp             --CHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHST---------THHHHHHHHTTCTTTSCHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHcCh---------hHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHH
Confidence            466788888999877788888999999988887655543         3888888988653   7899999999999888


Q ss_pred             cCChHH----HHHHHHcCcHHHHHHhhc-CCCHHHHHHHHHHHHHHhcC
Q 015951          198 QNNPLV----QKQVLELGALSKLMKMVK-SSFVEEAVKALYTVSSLIRN  241 (397)
Q Consensus       198 qNNp~~----Q~~vl~~g~lp~Ll~LL~-s~~~~v~~kAl~ALS~LiR~  241 (397)
                      +.-|.-    +...++...+..+.+.-. .++.-++.|...+++.++..
T Consensus        72 ~~l~~e~~~~~~~~lr~~ll~~l~~~~~~~~~~~IrnKL~~~la~l~~~  120 (980)
T 3ibv_A           72 REWNNESNLLELQMIRDSVWSYIKELSFLDEPAYISNAVQHLLTLLFLQ  120 (980)
T ss_dssp             HHCCTTTSHHHHHHHHHHHHHHHHHCCSTTSCTHHHHHHHHHHHHHHHH
T ss_pred             HhCChhhhHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHH
Confidence            743333    445555555665555211 23446788888888877654

>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B

Probab=95.27  E-value=0.45  Score=47.32  Aligned_cols=157  Identities=16%  Similarity=0.098  Sum_probs=106.5

Q ss_pred             CCCCchhHHHhcCCHHHHHHhcCC-----------CCHHHHHHHHHHHHHHhcCChHHHHHHH-HcCcHHHHHHhhcCCC
Q 015951          157 EPIDNANDLSKLGGLSVLVGQLNH-----------PDTDIRKISAWILGKASQNNPLVQKQVL-ELGALSKLMKMVKSSF  224 (397)
Q Consensus       157 e~iDnA~~~~~lGGl~~Li~lL~s-----------~~~~ir~~Aa~vLg~~aqNNp~~Q~~vl-~~g~lp~Ll~LL~s~~  224 (397)
                      .+++.-..|. .+|+..|+.+|..           .+..+......||..+. ||..--+.++ ..+++..|...+.+..
T Consensus        36 ~~~~Wv~~F~-~~Gl~~Ll~~L~~~~~~~~~~~~~~d~~~~~~~l~CLkalm-N~~~Gl~~vl~~~~~i~~l~~sL~s~~  113 (386)
T 2bnx_A           36 NPVSWVQTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFM-NNKFGIKTMLETEEGILLLVRAMDPAV  113 (386)
T ss_dssp             SCHHHHHHHH-HHHHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHHHHT-SSHHHHHHHHHSSSHHHHHHHTCCTTS
T ss_pred             CCcHHHHHHH-HhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHh-CCHHHHHHHHcCcHHHHHHHHHhCCCC
Confidence            4567778886 6899999987742           14578889999999998 4554445555 4578999999999888


Q ss_pred             HHHHHHHHHHHHHHhcCCh-hc-HHHH----------HhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCC
Q 015951          225 VEEAVKALYTVSSLIRNNL-AG-QEMF----------YVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHK  292 (397)
Q Consensus       225 ~~v~~kAl~ALS~LiR~~~-~~-~~~f----------~~~gGi~~L~~lL~s~~~d~klr~kA~~lL~~L~~~~l~~~~~  292 (397)
                      ..++..++--|+.++-... .+ ...+          .+..-+..|+..+.+. .+..++..++.+|..++.+     .+
T Consensus       114 ~~~r~~vleLL~alc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~-~~~e~~~a~m~lIN~lv~~-----~~  187 (386)
T 2bnx_A          114 PNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSG-TSIALKVGCLQLINALITP-----AE  187 (386)
T ss_dssp             HHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHHTSTT-SCHHHHHHHHHHHHHHHTT-----CS
T ss_pred             chHHHHHHHHHHHHHcCCCCCChHHHHHHHHHHHHHhCchhhHHHHHHHHHcC-ChHHHHHHHHHHHHHHHCC-----CC
Confidence            8888777766665554332 23 2222          2233577788888754 3667899999999999863     23


Q ss_pred             C------cchhHHhCCcHHHHHHhccCCChHHHHH
Q 015951          293 V------EPPLFRDRFFLKSVVDLTASADLDLQEK  321 (397)
Q Consensus       293 ~------~~~~l~~~g~v~~Lv~lL~~~d~dv~E~  321 (397)
                      +      .+..|...|+.+.+-.+-...++++..+
T Consensus       188 dl~~R~~LR~Ef~~~GL~~il~~Lr~~~~~~L~~Q  222 (386)
T 2bnx_A          188 ELDFRVHIRSELMRLGLHQVLQELREIENEDMKVQ  222 (386)
T ss_dssp             CHHHHHHHHHHHHHTTHHHHHHHHTTCCCHHHHHH
T ss_pred             CHHHHHHHHHHHHHCChHHHHHHHhccCChhHHHH
Confidence            2      4556778898887766544455554444

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=95.23  E-value=0.21  Score=55.59  Aligned_cols=191  Identities=13%  Similarity=0.146  Sum_probs=122.6

Q ss_pred             HHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhccCCCCchhHHHhc-CCHHHHHHhcCCCCHHHHHHHHHHHHHHhc--CC
Q 015951          124 DAQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKL-GGLSVLVGQLNHPDTDIRKISAWILGKASQ--NN  200 (397)
Q Consensus       124 d~~lmk~~i~~L~~~~~s~e~k~~AL~~L~~Lve~iDnA~~~~~l-GGl~~Li~lL~s~~~~ir~~Aa~vLg~~aq--NN  200 (397)
                      -..++..++..+.+.. -=..|+.||..+..+++.. ....-..+ ..+|.+-++.-.+.++|+..|..++..+|+  .|
T Consensus       131 ~~~~~~~~~~~~~~~~-kw~~k~~~l~~~~~~~~~~-~~~~~~~~~~~~p~~~~~~~d~k~~v~~~~~~~~~~~~~~~~n  208 (986)
T 2iw3_A          131 IKALLPHLTNAIVETN-KWQEKIAILAAFSAMVDAA-KDQVALRMPELIPVLSETMWDTKKEVKAAATAAMTKATETVDN  208 (986)
T ss_dssp             HHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHGGGCCC
T ss_pred             HHHHHHHHHHHhcccc-chHHHHHHHHHHHHHHHHh-HHHHHHhccchhcchHhhcccCcHHHHHHHHHHHHHHHhcCCC
Confidence            3445556666665543 3578999999999999754 11111222 346666678888999999999999999986  34


Q ss_pred             hHHHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHH
Q 015951          201 PLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVG  280 (397)
Q Consensus       201 p~~Q~~vl~~g~lp~Ll~LL~s~~~~v~~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klr~kA~~lL~  280 (397)
                      ..+.      ..+|.|++.+.+++.  --+++..||+..--.  ....=--+=-+|+|.+.|...+  ..++++++-.+-
T Consensus       209 ~d~~------~~~~~~~~~~~~p~~--~~~~~~~l~~~tfv~--~v~~~~l~~~~p~l~r~l~~~~--~~~~r~~~~~~~  276 (986)
T 2iw3_A          209 KDIE------RFIPSLIQCIADPTE--VPETVHLLGATTFVA--EVTPATLSIMVPLLSRGLNERE--TGIKRKSAVIID  276 (986)
T ss_dssp             TTTG------GGHHHHHHHHHCTTH--HHHHHHHHTTCCCCS--CCCHHHHHHHHHHHHHHHTSSS--HHHHHHHHHHHH
T ss_pred             cchh------hhHHHHHHHhcChhh--hHHHHHHhhcCeeEe--eecchhHHHHHHHHHhhhccCc--chhheeeEEEEc
Confidence            4332      479999999988643  446688888754221  1111000113577777787663  347899999999


Q ss_pred             HHhhchhccCCCCcchhHHhCCcHHHHHHhccC-CChHHHHHHHHHHHHHhcC
Q 015951          281 DLAKCQLENMHKVEPPLFRDRFFLKSVVDLTAS-ADLDLQEKALAAIKNLLQL  332 (397)
Q Consensus       281 ~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~-~d~dv~E~aL~aL~~L~~~  332 (397)
                      |||.  |. .+|.....|. ..+++.+-..... .||++||.|..|+..|...
T Consensus       277 n~~~--lv-~~~~~~~~f~-~~l~p~~~~~~~~~~~pe~r~~~~~a~~~l~~~  325 (986)
T 2iw3_A          277 NMCK--LV-EDPQVIAPFL-GKLLPGLKSNFATIADPEAREVTLRALKTLRRV  325 (986)
T ss_dssp             HHHT--TC-CCHHHHHHHH-TTTHHHHHHHTTTCCSHHHHHHHHHHHHHHHHH
T ss_pred             chhh--hc-CCHHHHhhhh-hhhhhHHHHHhhccCCHHHHHHHHHHHHHHHHh
Confidence            9995  21 1222222221 3455555554433 5999999999999998543

>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}

Probab=95.14  E-value=1.1  Score=44.15  Aligned_cols=209  Identities=10%  Similarity=0.045  Sum_probs=121.6

Q ss_pred             CCCHHHHHHhHHHHHHHHHhcC-CCC--HH---HHHHHHHHHhhCCCCCHHHHHHHHHHHHhccCCCCchhHHHhcCCHH
Q 015951           99 RLSPSELKKRQMEIKELMEKLK-TPS--DA---QLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLS  172 (397)
Q Consensus        99 ~~s~e~l~~r~~~L~ea~~~~~-~~~--d~---~lmk~~i~~L~~~~~s~e~k~~AL~~L~~Lve~iDnA~~~~~lGGl~  172 (397)
                      |.++.   ++++-+++++-.+. |.+  ..   .+.-..++.+.++  +.+.|.-..--+..+....+.+  |   =...
T Consensus        38 ~~~~~---kc~~~l~kll~l~~~G~~f~~~e~t~lf~~v~kl~~s~--d~~lKrLvYLyl~~~~~~~~e~--i---Lv~N  107 (355)
T 3tjz_B           38 PINPR---KCAHILTKILYLINQGEHLGTTEATEAFFAMTKLFQSN--DPTLRRMCYLTIKEMSCIAEDV--I---IVTS  107 (355)
T ss_dssp             SCCHH---HHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHGGGGCC--CHHHHHHHHHHHHHHTTTSSCG--G---GGHH
T ss_pred             CCcHH---HHHHHHHHHHHHHHCCCCCchhHHHHHHHHHHHHhcCC--CHHHHHHHHHHHHHhCCCHHHH--H---HHHH
Confidence            45664   55777888776552 322  11   1222334455544  4566655544555444443322  1   1455


Q ss_pred             HHHHhcCCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHHHhc
Q 015951          173 VLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVE  252 (397)
Q Consensus       173 ~Li~lL~s~~~~ir~~Aa~vLg~~aqNNp~~Q~~vl~~g~lp~Ll~LL~s~~~~v~~kAl~ALS~LiR~~~~~~~~f~~~  252 (397)
                      .+.+-++++++-+|..|.++++.+..  |+.-+     ...+.+-+.+.+.++-||.+|+.+...++..+|...+     
T Consensus       108 sl~kDl~~~N~~iR~lALRtL~~I~~--~~m~~-----~l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~pe~v~-----  175 (355)
T 3tjz_B          108 SLTKDMTGKEDSYRGPAVRALCQITD--STMLQ-----AIERYMKQAIVDKVPSVSSSALVSSLHLLKCSFDVVK-----  175 (355)
T ss_dssp             HHHHHHHSSCHHHHHHHHHHHHHHCC--TTTHH-----HHHHHHHHHHTCSSHHHHHHHHHHHHHHTTTCHHHHH-----
T ss_pred             HHHhhcCCCcHhHHHHHHHHHhcCCC--HHHHH-----HHHHHHHHHcCCCCHHHHHHHHHHHHHHhccCHHHHH-----
Confidence            66677888999999999999999974  32222     2566788888888899999999999999888876543     


Q ss_pred             CcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhch----------hccCC--CCc--chhH-------------HhCCcHH
Q 015951          253 AGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQ----------LENMH--KVE--PPLF-------------RDRFFLK  305 (397)
Q Consensus       253 gGi~~L~~lL~s~~~d~klr~kA~~lL~~L~~~~----------l~~~~--~~~--~~~l-------------~~~g~v~  305 (397)
                      +.+..+..++.+.  +.-++..|+.+++.+....          +....  ...  ...+             ....+++
T Consensus       176 ~~~~~l~~ll~d~--n~~V~~~Al~lL~ei~~~d~~a~~kLv~~l~~~~l~~~~~q~~llr~l~~~~~~d~~~~~~~~~~  253 (355)
T 3tjz_B          176 RWVNEAQEAASSD--NIMVQYHALGLLYHVRKNDRLAVSKMISKFTRHGLKSPFAYCMMIRVASRQLEDEDGSRDSPLFD  253 (355)
T ss_dssp             TTHHHHHHHTTCS--SHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHSSCCSCHHHHHHHHHHHTCC--------------
T ss_pred             HHHHHHHHHhcCC--CccHHHHHHHHHHHHHhhchHHHHHHHHHHhcCCCcChHHHHHHHHHHHHhccccchhhHHHHHH
Confidence            4567778888765  4457778888888776420          00000  000  0000             0123445


Q ss_pred             HHHHhccCCChHHHHHHHHHHHHHhc
Q 015951          306 SVVDLTASADLDLQEKALAAIKNLLQ  331 (397)
Q Consensus       306 ~Lv~lL~~~d~dv~E~aL~aL~~L~~  331 (397)
                      .+...|++.++-|.-.|+.++..+..
T Consensus       254 ~l~~~L~~~~~aVvyEa~k~I~~l~~  279 (355)
T 3tjz_B          254 FIESCLRNKHEMVVYEAASAIVNLPG  279 (355)
T ss_dssp             ---CCCCCSSHHHHHHHHHHHTC---
T ss_pred             HHHHHHcCCChHHHHHHHHHHHhccC
Confidence            55556677777788778777777655

>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B

Probab=94.79  E-value=0.26  Score=49.09  Aligned_cols=142  Identities=16%  Similarity=0.177  Sum_probs=94.9

Q ss_pred             cCcHHHHHHhhcC----C-------CHHHHHHHHHHHHHHhcCChhcHHHHHhc-CcHHHHHHhhcCCCccHHHHHHHHH
Q 015951          210 LGALSKLMKMVKS----S-------FVEEAVKALYTVSSLIRNNLAGQEMFYVE-AGDLMLQDILGNSSFEIRLHRKAVS  277 (397)
Q Consensus       210 ~g~lp~Ll~LL~s----~-------~~~v~~kAl~ALS~LiR~~~~~~~~f~~~-gGi~~L~~lL~s~~~d~klr~kA~~  277 (397)
                      .+|+..|+.+|..    .       +......++.+|.++. ++..+...+..+ +++..|..+|.++  .++++..++.
T Consensus        46 ~~Gl~~Ll~~L~~~~~~~~~~~~~~d~~~~~~~l~CLkalm-N~~~Gl~~vl~~~~~i~~l~~sL~s~--~~~~r~~vle  122 (386)
T 2bnx_A           46 AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFM-NNKFGIKTMLETEEGILLLVRAMDPA--VPNMMIDAAK  122 (386)
T ss_dssp             HHHHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHHHHT-SSHHHHHHHHHSSSHHHHHHHTCCTT--SHHHHHHHHH
T ss_pred             HhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHh-CCHHHHHHHHcCcHHHHHHHHHhCCC--CchHHHHHHH
Confidence            5788888877742    1       1234667888888775 566777777765 6899999999876  6678889999


Q ss_pred             HHHHHhhchhccC-CCCcchhH------HhCCcHHHHHHhcc-CCChHHHHHHHHHHHHHhcCChH------HHHHHHhc
Q 015951          278 LVGDLAKCQLENM-HKVEPPLF------RDRFFLKSVVDLTA-SADLDLQEKALAAIKNLLQLRTT------EALVLKDF  343 (397)
Q Consensus       278 lL~~L~~~~l~~~-~~~~~~~l------~~~g~v~~Lv~lL~-~~d~dv~E~aL~aL~~L~~~~~~------~r~~~~~~  343 (397)
                      +|..+|.-...++ ++...+.+      .+..-...+++.+. ..+.+++-.++..+-.+....++      .|..|. .
T Consensus       123 LL~alc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~~~~e~~~a~m~lIN~lv~~~~dl~~R~~LR~Ef~-~  201 (386)
T 2bnx_A          123 LLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVHIRSELM-R  201 (386)
T ss_dssp             HHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHHTSTTSCHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHH-H
T ss_pred             HHHHHHcCCCCCChHHHHHHHHHHHHHhCchhhHHHHHHHHHcCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH-H
Confidence            9999986210001 11111111      22334455777776 45788998888888888887653      233455 7


Q ss_pred             CChHHHHHHHHH
Q 015951          344 CGLDTALERLRQ  355 (397)
Q Consensus       344 ~gL~~~L~~Lr~  355 (397)
                      +||...+..||.
T Consensus       202 ~GL~~il~~Lr~  213 (386)
T 2bnx_A          202 LGLHQVLQELRE  213 (386)
T ss_dssp             TTHHHHHHHHTT
T ss_pred             CChHHHHHHHhc
Confidence            999999998876

>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*

Probab=94.59  E-value=1.2  Score=44.15  Aligned_cols=243  Identities=14%  Similarity=0.125  Sum_probs=128.9

Q ss_pred             cccCCCCHHHHHHhHHHHHHHHHhcCCCCHHHHHHHHHHHhhCCCCCHHHHHHHHH-HHHhccCCCCchhHHHhcCCHHH
Q 015951           95 QDVQRLSPSELKKRQMEIKELMEKLKTPSDAQLIQIAIDDLNNSTLSLEDSQRALQ-ELLILVEPIDNANDLSKLGGLSV  173 (397)
Q Consensus        95 ~~~~~~s~e~l~~r~~~L~ea~~~~~~~~d~~lmk~~i~~L~~~~~s~e~k~~AL~-~L~~Lve~iDnA~~~~~lGGl~~  173 (397)
                      +...++|++++.   +-+++.|++++.+.+..      +-+.+.  +.+.|-.-+. ....  .... ........--.-
T Consensus         5 ~~~~~~se~ev~---~~F~~mL~~mnl~~ek~------~~l~~~--~~e~Kw~mi~~~~~~--~~~~-~~~~~~~~sP~~   70 (383)
T 3eg5_B            5 QSLQDISDEQVL---VLFEQMLVDMNLNEEKQ------QPLREK--DIVIKREMVSQYLHT--SKAG-MNQKESSRSAMM   70 (383)
T ss_dssp             ----------CC---HHHHHHHHHTTCCHHHH------HHHHSS--CHHHHHHHHHHHHHH--C----------CCCHHH
T ss_pred             hhcccCCHHHHH---HHHHHHHHHcCCCHHHH------HHHHhC--CHHHHHHHHHHHHHH--hhhc-cccccCCCCHHH
Confidence            345567776653   23466777777765443      333333  4455533322 1111  0000 000111122223


Q ss_pred             HHHhcCCCC-HHHHHHHHHHHHHHhcCChH-HHHHHHHcCcHHHHHHhhcC-----------CCHHHHHHHHHHHHHHhc
Q 015951          174 LVGQLNHPD-TDIRKISAWILGKASQNNPL-VQKQVLELGALSKLMKMVKS-----------SFVEEAVKALYTVSSLIR  240 (397)
Q Consensus       174 Li~lL~s~~-~~ir~~Aa~vLg~~aqNNp~-~Q~~vl~~g~lp~Ll~LL~s-----------~~~~v~~kAl~ALS~LiR  240 (397)
                      .+..|.+.. .+--.....-|...-.++|. .=+.|. .+|+..|+.+|..           .+.......+.||.++. 
T Consensus        71 yi~~L~~~~~~~kl~~~L~sL~v~Lrt~~~sWV~~F~-~~Gl~~Ll~iL~~~~~~~~~~~~~~d~~~q~~~l~CLkalm-  148 (383)
T 3eg5_B           71 YIQELRSGLRDMHLLSCLESLRVSLTSHPVSWVQTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFM-  148 (383)
T ss_dssp             HHHHHTTTCCHHHHHHHHHHHHHHHHHSCHHHHHHHH-HHHHHHHHHHHHHHHTCC-------CHHHHHHHHHHHHHHT-
T ss_pred             HHHHHHhcccchhHHHHHHHHHHHHhhCccHHHHHHH-HccHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHh-
Confidence            445554432 11111122233333334443 334454 7889999998852           11245567788888775 


Q ss_pred             CChhcHHHHHhc-CcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccC-CCCcchhH------HhCCcHHHHHHhcc
Q 015951          241 NNLAGQEMFYVE-AGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENM-HKVEPPLF------RDRFFLKSVVDLTA  312 (397)
Q Consensus       241 ~~~~~~~~f~~~-gGi~~L~~lL~s~~~d~klr~kA~~lL~~L~~~~l~~~-~~~~~~~l------~~~g~v~~Lv~lL~  312 (397)
                      ++..+...++.+ .++..|..+|.++  .++++.-|+-+|+.+|.-....+ ++...+.+      .+..-...+++.|.
T Consensus       149 N~~~G~~~vl~~~~~i~~l~~~L~s~--~~~~~~~aleLL~~lc~~~~~~gG~~~VL~Al~~~~~~~e~~RF~~lv~~L~  226 (383)
T 3eg5_B          149 NNKFGIKTMLETEEGILLLVRAMDPA--VPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLK  226 (383)
T ss_dssp             SSHHHHHHHHTCSSHHHHHHHTCCTT--SHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHTTS
T ss_pred             cchhhHHHHHcChHHHHHHHHHhCCC--chHHHHHHHHHHHHHHhCcCcCCcHHHHHHHHHHHHHhCCCCcHHHHHHHHH
Confidence            567777777765 6789999999876  66789999999999986210000 11111111      22344566788887


Q ss_pred             C-CChHHHHHHHHHHHHHhcCChH--H----HHHHHhcCChHHHHHHHHHH
Q 015951          313 S-ADLDLQEKALAAIKNLLQLRTT--E----ALVLKDFCGLDTALERLRQQ  356 (397)
Q Consensus       313 ~-~d~dv~E~aL~aL~~L~~~~~~--~----r~~~~~~~gL~~~L~~Lr~~  356 (397)
                      . .+.+++-.++..+-.+....+.  .    |..|. .+|+...+..||..
T Consensus       227 ~~~~~e~~~~~m~lIN~li~~~~dl~~R~~lR~ef~-~~Gl~~il~~lr~~  276 (383)
T 3eg5_B          227 SGTSIALKVGCLQLINALITPAEELDFRVHIRSELM-RLGLHQVLQELREI  276 (383)
T ss_dssp             TTSCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHH-HTTHHHHHHHHTTS
T ss_pred             ccCcHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH-HCChHHHHHHHhcC
Confidence            6 5888888888888888877543  2    23444 68999999988753

>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}

Probab=94.56  E-value=0.67  Score=42.59  Aligned_cols=148  Identities=16%  Similarity=0.157  Sum_probs=97.8

Q ss_pred             HHHHHHHcCcHHHHHHhhcCC-----------CHHHHHHHHHHHHHHhcCChhcHHHHHhc-CcHHHHHHhhcCCCccHH
Q 015951          203 VQKQVLELGALSKLMKMVKSS-----------FVEEAVKALYTVSSLIRNNLAGQEMFYVE-AGDLMLQDILGNSSFEIR  270 (397)
Q Consensus       203 ~Q~~vl~~g~lp~Ll~LL~s~-----------~~~v~~kAl~ALS~LiR~~~~~~~~f~~~-gGi~~L~~lL~s~~~d~k  270 (397)
                      .=+.| ..+|+..|+.+|..-           +......++.+|.++. ++..+...+..+ +++..|...|.++  .++
T Consensus        36 Wv~~F-~~~Gl~~L~~~L~~~~~~~~~~~~~~~~~~~~~~l~CLkalm-n~~~G~~~vl~~~~~i~~l~~~L~s~--~~~  111 (233)
T 2f31_A           36 WVQTF-GAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFM-NNKFGIKTMLETEEGILLLVRAMDPA--VPN  111 (233)
T ss_dssp             HHHHH-HHHHHHHHHHHHHHHHTCC-----CCHHHHHHHHHHHHHHHT-SSHHHHHHHHTSSSHHHHHHTTCCTT--SHH
T ss_pred             HHHHH-HHhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHh-CChHHHHHHHcCcHHHHHHHHHhCCC--Cch
Confidence            33445 578888888887531           1234567788888775 567777777765 6789999999876  668


Q ss_pred             HHHHHHHHHHHHhhchhccC-CCCcchhH------HhCCcHHHHHHhcc-CCChHHHHHHHHHHHHHhcCChH------H
Q 015951          271 LHRKAVSLVGDLAKCQLENM-HKVEPPLF------RDRFFLKSVVDLTA-SADLDLQEKALAAIKNLLQLRTT------E  336 (397)
Q Consensus       271 lr~kA~~lL~~L~~~~l~~~-~~~~~~~l------~~~g~v~~Lv~lL~-~~d~dv~E~aL~aL~~L~~~~~~------~  336 (397)
                      ++.-|+.+|+.+|.-...++ ++...+.+      .+..-...+++.++ ..+.+.+-.++..+-.+....++      .
T Consensus       112 ~r~~~leLL~~lc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~~~~e~~~~~m~lIN~li~~~~dl~~R~~l  191 (233)
T 2f31_A          112 MMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVHI  191 (233)
T ss_dssp             HHHHHHHHHHHHHTCSSSSCHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHTTCCCHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHHhCCcchHHHHHHHHhcCChHHHHHHHHHHHHHHHCCCCCHHHHHHH
Confidence            89999999999886310001 11111111      22233445677776 45788888888888888877653      2


Q ss_pred             HHHHHhcCChHHHHHHHHH
Q 015951          337 ALVLKDFCGLDTALERLRQ  355 (397)
Q Consensus       337 r~~~~~~~gL~~~L~~Lr~  355 (397)
                      |..|. .+|+...++.||.
T Consensus       192 R~ef~-~~Gl~~il~~l~~  209 (233)
T 2f31_A          192 RSELM-RLGLHQVLQELRE  209 (233)
T ss_dssp             HHHHH-HTTHHHHHHHHHH
T ss_pred             HHHHH-HCChHHHHHHHhc
Confidence            33444 7899999998875

>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B

Probab=94.49  E-value=1  Score=48.91  Aligned_cols=138  Identities=13%  Similarity=0.069  Sum_probs=91.6

Q ss_pred             CCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCcHHHHHHhh---cCCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcH
Q 015951          179 NHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMV---KSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGD  255 (397)
Q Consensus       179 ~s~~~~ir~~Aa~vLg~~aqNNp~~Q~~vl~~g~lp~Ll~LL---~s~~~~v~~kAl~ALS~LiR~~~~~~~~f~~~gGi  255 (397)
                      ++++...+..|++++|.++..-+...     ...++.++..+   .++++.++..++|+|+...+...... .+. ..-+
T Consensus       459 ~~~~w~~~eaal~al~~i~~~~~~~~-----~~~l~~l~~~l~~l~~~~~~vr~~~~~~l~~~~~~l~~~~-~~l-~~vl  531 (963)
T 2x19_B          459 EPYSWQHTEALLYGFQSIAETIDVNY-----SDVVPGLIGLIPRISISNVQLADTVMFTIGALSEWLADHP-VMI-NSVL  531 (963)
T ss_dssp             CSCCHHHHHHHHHHHHHHTTSCCSSC-----CSHHHHHHHHGGGSCCCSHHHHHHHHHHHHHTHHHHHHCH-HHH-TTTH
T ss_pred             CCCchHHHHHHHHHHHHHHhhcCchh-----hHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHhCH-HHH-HHHH
Confidence            55677889999999999997643211     22344454443   33457799999999998765422221 333 3677


Q ss_pred             HHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHHhCCcHHHHHHhccCC--ChHHHHHHHHHHHHHhcCC
Q 015951          256 LMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASA--DLDLQEKALAAIKNLLQLR  333 (397)
Q Consensus       256 ~~L~~lL~s~~~d~klr~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~--d~dv~E~aL~aL~~L~~~~  333 (397)
                      +.|...|.+    .+++..|+.++.+++..    ......+.+  ..++..+..++..+  +.+.++.+..|+..++...
T Consensus       532 ~~l~~~l~~----~~V~~~A~~al~~l~~~----~~~~l~p~~--~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~~~  601 (963)
T 2x19_B          532 PLVLHALGN----PELSVSSVSTLKKICRE----CKYDLPPYA--ANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSAL  601 (963)
T ss_dssp             HHHHHHTTC----GGGHHHHHHHHHHHHHH----TGGGCTTTH--HHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTS
T ss_pred             HHHHHHhCC----chHHHHHHHHHHHHHHH----HHHHHHhhH--HHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhcC
Confidence            888888864    35899999999999962    222233332  23455555666653  5789999999999998654

>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N

Probab=94.35  E-value=0.18  Score=55.81  Aligned_cols=134  Identities=14%  Similarity=0.118  Sum_probs=82.7

Q ss_pred             CHHHHHHhc-CCCCHHHHHHHHHHHHHHhc--CChHHHHHHHHcCcHHHHHHhhcC-CCHHHHHHHHHHHHHHhcCChhc
Q 015951          170 GLSVLVGQL-NHPDTDIRKISAWILGKASQ--NNPLVQKQVLELGALSKLMKMVKS-SFVEEAVKALYTVSSLIRNNLAG  245 (397)
Q Consensus       170 Gl~~Li~lL-~s~~~~ir~~Aa~vLg~~aq--NNp~~Q~~vl~~g~lp~Ll~LL~s-~~~~v~~kAl~ALS~LiR~~~~~  245 (397)
                      .++.+++.| .+.++-+|..|+.++|-+.-  .|+         .+|..|++.+.+ .++.+|..|+.||+-+.-+.+..
T Consensus       542 ~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn~---------~aIq~LL~~~~~d~~d~VRraAViaLGlI~~g~~e~  612 (963)
T 4ady_A          542 LADDLITKMLASDESLLRYGGAFTIALAYAGTGNN---------SAVKRLLHVAVSDSNDDVRRAAVIALGFVLLRDYTT  612 (963)
T ss_dssp             GGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCH---------HHHHHHHHHHHHCSCHHHHHHHHHHHHHHTSSSCSS
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCH---------HHHHHHHHHhccCCcHHHHHHHHHHHHhhccCCHHH
Confidence            344444443 23455555555555543332  222         245656665544 45678888999999876555432


Q ss_pred             HHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHHhCCcHHHHHHhccCCChHHHHHHHHH
Q 015951          246 QEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAA  325 (397)
Q Consensus       246 ~~~f~~~gGi~~L~~lL~s~~~d~klr~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~dv~E~aL~a  325 (397)
                               ++.++..|... .+.-+|..|++++.-++.     +++.       ..++..|..+++..|..|+..|+.+
T Consensus       613 ---------v~rlv~~L~~~-~d~~VR~gAalALGli~a-----Gn~~-------~~aid~L~~L~~D~d~~Vrq~Ai~A  670 (963)
T 4ady_A          613 ---------VPRIVQLLSKS-HNAHVRCGTAFALGIACA-----GKGL-------QSAIDVLDPLTKDPVDFVRQAAMIA  670 (963)
T ss_dssp             ---------HHHHTTTGGGC-SCHHHHHHHHHHHHHHTS-----SSCC-------HHHHHHHHHHHTCSSHHHHHHHHHH
T ss_pred             ---------HHHHHHHHHhc-CCHHHHHHHHHHHHHhcc-----CCCc-------HHHHHHHHHHccCCCHHHHHHHHHH
Confidence                     33344444322 256789999999998874     2221       2346677777888899999999999


Q ss_pred             HHHHhcCCh
Q 015951          326 IKNLLQLRT  334 (397)
Q Consensus       326 L~~L~~~~~  334 (397)
                      |+.+.....
T Consensus       671 LG~Ig~gtn  679 (963)
T 4ady_A          671 LSMILIQQT  679 (963)
T ss_dssp             HHHHSTTCC
T ss_pred             HHHHhcCCc
Confidence            998886543

>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}

Probab=94.27  E-value=0.44  Score=44.95  Aligned_cols=161  Identities=15%  Similarity=0.066  Sum_probs=113.1

Q ss_pred             CHHHHHHHHHHHhhC---CCCCH--HHH-HHHHHHHHhccCCCCchhHHHhcCCHHHHHHhcCCC-----CHHHHHHHHH
Q 015951          123 SDAQLIQIAIDDLNN---STLSL--EDS-QRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHP-----DTDIRKISAW  191 (397)
Q Consensus       123 ~d~~lmk~~i~~L~~---~~~s~--e~k-~~AL~~L~~Lve~iDnA~~~~~lGGl~~Li~lL~s~-----~~~ir~~Aa~  191 (397)
                      +-+.+.++.+.++-.   +..+.  .+| .+||.-|+-.+...|....|.+.+----|.++|+.+     .+-+|-.+..
T Consensus        45 tia~LLQEIisiYp~lspp~Lt~~~SnRVcnaLaLlQcvAshpetr~~Fl~a~iplyLyPfL~t~sk~r~fE~LRLtsLG  124 (268)
T 2fv2_A           45 TIAALLQEIVNIYPSINPPTLTAHQSNRVCNALALLQCVASHPETRSAFLAAHIPLFLYPFLHTVSKTRPFEYLRLTSLG  124 (268)
T ss_dssp             HHHHHHHHHHHTGGGBTTBCCCHHHHHHHHHHHHHHHHHHHCTTTHHHHHHTTGGGGTHHHHHCCCCSHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcccCCCcccCHHHHhHHHHHHHHHHHHHcCcchhhHHHHccchHHhhhhhccccCCCcchhhhhhHHH
Confidence            456777888877633   23333  233 567777788888899999999987665666777543     3679999999


Q ss_pred             HHHHHhc-CChHHHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChh------cHHHHHhc-CcHHHHHHhhc
Q 015951          192 ILGKASQ-NNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLA------GQEMFYVE-AGDLMLQDILG  263 (397)
Q Consensus       192 vLg~~aq-NNp~~Q~~vl~~g~lp~Ll~LL~s~~~~v~~kAl~ALS~LiR~~~~------~~~~f~~~-gGi~~L~~lL~  263 (397)
                      +||.+++ +++++-..+++.+.+|..++.+..+++--+..|.|-+.-++-+...      ..+.|..- ..+..++..+.
T Consensus       125 VIgaLvK~dd~eVi~fLL~tEiiplCLrime~GselSKtvAtfIlqKIL~dd~GL~YiC~t~eRF~av~~vL~~mV~~l~  204 (268)
T 2fv2_A          125 VIGALVKTDEQEVINFLLTTEIIPLCLRIMESGSELSKTVATFILQKILLDDTGLAYICQTYERFSHVAMILGKMVLQLS  204 (268)
T ss_dssp             HHHHHGGGCCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHHHHHHHHHHSHHHHHHHTSSHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHhccCcHHHHHHHHhhhHHHHHHHHHhhccHHHHHHHHHHHHHHhccchhHHHHHccHHHHHHHHHHHHHHHHHHh
Confidence            9999997 4678888899999999999999999988899999999988755322      12233321 22333333333


Q ss_pred             CCCccHHHHHHHHHHHHHHhh
Q 015951          264 NSSFEIRLHRKAVSLVGDLAK  284 (397)
Q Consensus       264 s~~~d~klr~kA~~lL~~L~~  284 (397)
                      .. .+.|+-+.++.+-..|+.
T Consensus       205 ~~-ps~RLLKhiircYlRLsd  224 (268)
T 2fv2_A          205 KE-PSARLLKHVVRCYLRLSD  224 (268)
T ss_dssp             TS-CCHHHHHHHHHHHHHHTT
T ss_pred             cC-CChHHHHHHHHHHHHHhc
Confidence            22 356777777777777764

>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A

Probab=94.23  E-value=0.32  Score=53.40  Aligned_cols=181  Identities=9%  Similarity=0.029  Sum_probs=104.1

Q ss_pred             CHHHHHHHHHHHHhccCCCC----chh------HHHhcCCHHHHHHhcCCC---CHHHHHHHHHHHHHHhcCChHHHHHH
Q 015951          141 SLEDSQRALQELLILVEPID----NAN------DLSKLGGLSVLVGQLNHP---DTDIRKISAWILGKASQNNPLVQKQV  207 (397)
Q Consensus       141 s~e~k~~AL~~L~~Lve~iD----nA~------~~~~lGGl~~Li~lL~s~---~~~ir~~Aa~vLg~~aqNNp~~Q~~v  207 (397)
                      +-..|..|+-.+.-+.+...    ...      ++... -...+++.|.++   ++-+|..|+|+||..+..-+   ...
T Consensus       418 ~w~~reaal~algaia~~~~~~~~~~~~~~~~~~l~~~-l~~~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~~~---~~~  493 (960)
T 1wa5_C          418 NWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDF-FTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQLT---KAQ  493 (960)
T ss_dssp             CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHH-HHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGSC---HHH
T ss_pred             hHHHHHHHHHHHHHHHHHhccccCCcccccccccHHHH-HHHHhHHHhcCCCCCCceehHHHHHHHHHHHhhCC---HHH
Confidence            34577778777766654311    011      11110 012244556666   89999999999999986522   222


Q ss_pred             HHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCh-------h-cHHHHHh--cCcHHHHHHhhcCCC-ccHH--HHHH
Q 015951          208 LELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNL-------A-GQEMFYV--EAGDLMLQDILGNSS-FEIR--LHRK  274 (397)
Q Consensus       208 l~~g~lp~Ll~LL~s~~~~v~~kAl~ALS~LiR~~~-------~-~~~~f~~--~gGi~~L~~lL~s~~-~d~k--lr~k  274 (397)
                      + ...++.+++.+.+++..|+..|++||.+++.+..       . ....+..  ..-++.|..++.... ...+  ....
T Consensus       494 l-~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~~~~~~~~~~~~~~~~l~p~l~~ll~~L~~ll~~~~~~~~~~~~~e~  572 (960)
T 1wa5_C          494 L-IELMPILATFLQTDEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNSTEILLKNLIALILKHGSSPEKLAENEF  572 (960)
T ss_dssp             H-HHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTTTHHHHHHHHHHHHHTTCCCHHHHTSCHH
T ss_pred             H-HHHHHHHHHHhCCCChhHHHHHHHHHHHHHhcccccccccccccHHHhhhhHHHHHHHHHHHHHhccCCCCcccccHH
Confidence            2 2478889998988778899999999999987421       1 1122211  234555566666531 0011  2235


Q ss_pred             HHHHHHHHhhchhccCCCCcchhHHhCCcHHHHHHhc----c-CCChHHHHHHHHHHHHHhcC
Q 015951          275 AVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLT----A-SADLDLQEKALAAIKNLLQL  332 (397)
Q Consensus       275 A~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL----~-~~d~dv~E~aL~aL~~L~~~  332 (397)
                      +..++..++..    ..+...+.+.  .+++.+...+    + .++..+...++.+|..++..
T Consensus       573 l~~al~~vv~~----~~~~~~p~~~--~l~~~L~~~l~~~~~~~~~~~~~~~~~e~l~~l~~~  629 (960)
T 1wa5_C          573 LMRSIFRVLQT----SEDSIQPLFP--QLLAQFIEIVTIMAKNPSNPRFTHYTFESIGAILNY  629 (960)
T ss_dssp             HHHHHHHHHHH----HTTTTGGGHH--HHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHH----HHHhhhhHHH--HHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhc
Confidence            66667766642    2334444322  2344444433    2 34677888888888888875

>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B

Probab=94.06  E-value=0.31  Score=54.49  Aligned_cols=145  Identities=11%  Similarity=0.110  Sum_probs=87.9

Q ss_pred             CCHHHHHHHHHHHHHHhcCChHHHHHHHHcCcHHHHHHhhcCCC---H--HHHHHHHHHHHHHhc---CChhcHHHHHhc
Q 015951          181 PDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSF---V--EEAVKALYTVSSLIR---NNLAGQEMFYVE  252 (397)
Q Consensus       181 ~~~~ir~~Aa~vLg~~aqNNp~~Q~~vl~~g~lp~Ll~LL~s~~---~--~v~~kAl~ALS~LiR---~~~~~~~~f~~~  252 (397)
                      .+-..+..|+|++|.++..-..-+..-.=..++|.|+.+.....   +  -++..++|.||...+   .|+.    |+ .
T Consensus       465 ~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lGry~~wl~~~~~----~L-~  539 (1023)
T 4hat_C          465 WSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLCVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWN----FL-R  539 (1023)
T ss_dssp             CCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCHHHHHHCHH----HH-H
T ss_pred             CCHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhhhccccCcchHHHHHHHHHHHHHHHHHHhccHH----HH-H
Confidence            56789999999999999764433333233357888999886411   2  244567799987544   2322    21 2


Q ss_pred             CcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhch---hccCC-CCcchhHHhCCcHHHHHHhccCCChHHHHHHHHHHHH
Q 015951          253 AGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQ---LENMH-KVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKN  328 (397)
Q Consensus       253 gGi~~L~~lL~s~~~d~klr~kA~~lL~~L~~~~---l~~~~-~~~~~~l~~~g~v~~Lv~lL~~~d~dv~E~aL~aL~~  328 (397)
                      .-+..|...+.++  ..+++..|++++.+||..-   +...+ .+..+.+  ..++..+...+..-+..-+..+..|+..
T Consensus       540 ~vl~~L~~~l~~~--~~~v~~~A~~al~~l~~~c~~~l~~~~~~e~~p~~--~~il~~l~~~~~~l~~~~~~~lyeai~~  615 (1023)
T 4hat_C          540 TVILKLFEFMHET--HEGVQDMACDTFIKIVQKCKYHFVIQQPRESEPFI--QTIIRDIQKTTADLQPQQVHTFYKACGI  615 (1023)
T ss_dssp             HHHHHHHHHTTCS--CHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHH--HHHHHTHHHHHTTSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhcC--CHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchhH--HHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence            3344566666544  4679999999999999631   10000 0001111  1233334444444577788899999999


Q ss_pred             HhcCCh
Q 015951          329 LLQLRT  334 (397)
Q Consensus       329 L~~~~~  334 (397)
                      +++..+
T Consensus       616 vi~~~~  621 (1023)
T 4hat_C          616 IISEER  621 (1023)
T ss_dssp             HHTTCC
T ss_pred             HHHhCC
Confidence            998754

>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N

Probab=94.02  E-value=0.68  Score=51.23  Aligned_cols=140  Identities=14%  Similarity=0.099  Sum_probs=91.6

Q ss_pred             CCHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhcc-CCCCchhHHHhcCCHHHHHHhc-CCCCHHHHHHHHHHHHHHhcC
Q 015951          122 PSDAQLIQIAIDDLNNSTLSLEDSQRALQELLILV-EPIDNANDLSKLGGLSVLVGQL-NHPDTDIRKISAWILGKASQN  199 (397)
Q Consensus       122 ~~d~~lmk~~i~~L~~~~~s~e~k~~AL~~L~~Lv-e~iDnA~~~~~lGGl~~Li~lL-~s~~~~ir~~Aa~vLg~~aqN  199 (397)
                      ..+...+++++..+.+.. +.+.+..|...|..+. .+.         ..++.++..| .+.++.+|..|++++|.++..
T Consensus       573 TGn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~---------e~v~rlv~~L~~~~d~~VR~gAalALGli~aG  642 (963)
T 4ady_A          573 TGNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDY---------TTVPRIVQLLSKSHNAHVRCGTAFALGIACAG  642 (963)
T ss_dssp             SCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSC---------SSHHHHTTTGGGCSCHHHHHHHHHHHHHHTSS
T ss_pred             CCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCH---------HHHHHHHHHHHhcCCHHHHHHHHHHHHHhccC
Confidence            345666777777776543 4456667777776543 222         2467777644 778999999999999999988


Q ss_pred             ChHHHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhc----HHHHHhcCcHHHHHHhhcCCCccHHHHHHH
Q 015951          200 NPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAG----QEMFYVEAGDLMLQDILGNSSFEIRLHRKA  275 (397)
Q Consensus       200 Np~~Q~~vl~~g~lp~Ll~LL~s~~~~v~~kAl~ALS~LiR~~~~~----~~~f~~~gGi~~L~~lL~s~~~d~klr~kA  275 (397)
                      ||.  .     .++..|..+..+.+..||..|+.||+-+.-+...+    ...|.     ..|.....+++.+...+--|
T Consensus       643 n~~--~-----~aid~L~~L~~D~d~~Vrq~Ai~ALG~Ig~gtnna~~~rva~~l-----~~L~~~~~dk~~d~~~~fga  710 (963)
T 4ady_A          643 KGL--Q-----SAIDVLDPLTKDPVDFVRQAAMIALSMILIQQTEKLNPQVADIN-----KNFLSVITNKHQEGLAKFGA  710 (963)
T ss_dssp             SCC--H-----HHHHHHHHHHTCSSHHHHHHHHHHHHHHSTTCCTTTCTTHHHHH-----HHHHHHHHCSSSCHHHHHHH
T ss_pred             CCc--H-----HHHHHHHHHccCCCHHHHHHHHHHHHHHhcCCccccchHHHHHH-----HHHHHHHhcccccHHHHHHH
Confidence            772  1     25667778888888999999999999887665444    23232     22444444433344455555


Q ss_pred             HHHHHHHh
Q 015951          276 VSLVGDLA  283 (397)
Q Consensus       276 ~~lL~~L~  283 (397)
                      ..+..-+.
T Consensus       711 ~iAqGll~  718 (963)
T 4ady_A          711 CVAQGIMN  718 (963)
T ss_dssp             HHHHHHHT
T ss_pred             HHHHHHHh
Confidence            55555443

>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9

Probab=93.67  E-value=0.036  Score=56.76  Aligned_cols=82  Identities=15%  Similarity=0.131  Sum_probs=69.1

Q ss_pred             chhHHHhc--CCHHHHHHhcCC----------CCHHHHHHHHHHHHHHhcCChHHHHHHHHcCcHHHHHHhhcCCCHHHH
Q 015951          161 NANDLSKL--GGLSVLVGQLNH----------PDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEA  228 (397)
Q Consensus       161 nA~~~~~l--GGl~~Li~lL~s----------~~~~ir~~Aa~vLg~~aqNNp~~Q~~vl~~g~lp~Ll~LL~s~~~~v~  228 (397)
                      ||..|.+-  ..+..|+.+|.+          .++.+.+-||.=||..++..|.-+..+-+.|+=..+++|+.+++++||
T Consensus       385 Na~kf~e~~~~llk~L~~iL~~~~~~~~~~~s~d~~~laVAc~Digefvr~~P~gr~i~~~lg~K~~VM~Lm~h~d~~Vr  464 (480)
T 1ho8_A          385 NIDEFKKDNYKIFRQLIELLQAKVRNGDVNAKQEKIIIQVALNDITHVVELLPESIDVLDKTGGKADIMELLNHSDSRVK  464 (480)
T ss_dssp             HSGGGSSGGGHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHSHHHHHHHHTSCSSHHHH
T ss_pred             HHHHHHhcchHHHHHHHHHHhhhccccccccCCCcceEEeecccHHHHHHHCcchhHHHHHcCcHHHHHHHhcCCCHHHH
Confidence            44444432  245678888863          478999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhcCC
Q 015951          229 VKALYTVSSLIRNN  242 (397)
Q Consensus       229 ~kAl~ALS~LiR~~  242 (397)
                      ..|+.|+.-++.++
T Consensus       465 ~~AL~avQklm~~~  478 (480)
T 1ho8_A          465 YEALKATQAIIGYT  478 (480)
T ss_dssp             HHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHhc
Confidence            99999999887654

>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}

Probab=93.54  E-value=0.41  Score=52.34  Aligned_cols=131  Identities=10%  Similarity=0.121  Sum_probs=82.8

Q ss_pred             CHHHHHHHHHHHHhccCCCCchhHHHhcCCHHHHH---HhcC--CCCHHHHHHHHHHHHHHhc---CChHHHHHHHHcCc
Q 015951          141 SLEDSQRALQELLILVEPIDNANDLSKLGGLSVLV---GQLN--HPDTDIRKISAWILGKASQ---NNPLVQKQVLELGA  212 (397)
Q Consensus       141 s~e~k~~AL~~L~~Lve~iDnA~~~~~lGGl~~Li---~lL~--s~~~~ir~~Aa~vLg~~aq---NNp~~Q~~vl~~g~  212 (397)
                      +-..++.|+-.+.-+.+.......    ..++.++   ..|.  .+++.||..|+|+||..+.   .+|    ..+. ..
T Consensus       477 ~w~~~eaal~~l~~iae~~~~~~~----~~l~~l~~~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~~----~~l~-~v  547 (971)
T 2x1g_F          477 HWTKLEACIYSFQSVAEHFGGEEK----RQIPRLMRVLAEIPYEKLNVKLLGTALETMGSYCNWLMENP----AYIP-PA  547 (971)
T ss_dssp             CCHHHHHHHHHHHHTTTC----------CHHHHHHHHHHHSCTTTSCHHHHHHHHHHHHHTHHHHC--------CHH-HH
T ss_pred             cHHHHHHHHHHHHHHHhhcChhhh----HHHHHHHHHHHhcCccccCHHHHHHHHHHHHHHHHHHhcCH----HHHH-HH
Confidence            445788888888887776543221    2233333   3334  2489999999999999874   223    1121 35


Q ss_pred             HHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhh
Q 015951          213 LSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAK  284 (397)
Q Consensus       213 lp~Ll~LL~s~~~~v~~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klr~kA~~lL~~L~~  284 (397)
                      +|.|+..++   +.++..|.+|+..+++........++ ..-+..|..++..+..+.+.+..+..++..++.
T Consensus       548 l~~l~~~l~---~~v~~~A~~al~~l~~~~~~~l~p~~-~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~  615 (971)
T 2x1g_F          548 INLLVRGLN---SSMSAQATLGLKELCRDCQLQLKPYA-DPLLNACHASLNTGRMKNSDSVRLMFSIGKLMS  615 (971)
T ss_dssp             HHHHHHHHH---SSCHHHHHHHHHHHHHHCHHHHHHHH-HHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhC---hHHHHHHHHHHHHHHHHHHHhccccH-HHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHH
Confidence            677777773   56899999999999987654333332 234556667777643456788888999998885

>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A

Probab=92.85  E-value=0.64  Score=47.56  Aligned_cols=122  Identities=10%  Similarity=0.087  Sum_probs=83.4

Q ss_pred             CCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHH
Q 015951          180 HPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQ  259 (397)
Q Consensus       180 s~~~~ir~~Aa~vLg~~aqNNp~~Q~~vl~~g~lp~Ll~LL~s~~~~v~~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~  259 (397)
                      .+++..+..|+..|....++-|..++..     |..++.|..+++..+|+.|+..|..++++  .....     -..+|+
T Consensus        39 kg~~k~K~LaaQ~I~kffk~FP~l~~~A-----i~a~lDLcEDed~~IR~qaik~Lp~~ck~--~~i~k-----iaDvL~  106 (507)
T 3u0r_A           39 KGGTKEKRLAAQFIPKFFKHFPELADSA-----INAQLDLCEDEDVSIRRQAIKELPQFATG--ENLPR-----VADILT  106 (507)
T ss_dssp             GSCHHHHHHHHHHHHHHGGGCGGGHHHH-----HHHHHHHHTCSSHHHHHHHHHHGGGGCCT--TCHHH-----HHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHhhChhhHHHH-----HHHHHHHHhcccHHHHHHHHHhhHHHhhh--hhhhh-----HHHHHH
Confidence            3579999999999999999999999865     66799999999999999999999999997  33333     457899


Q ss_pred             HhhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHHhCCcHHHHHHhccCCChHHHHHHHHHHHH
Q 015951          260 DILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKN  328 (397)
Q Consensus       260 ~lL~s~~~d~klr~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~dv~E~aL~aL~~  328 (397)
                      ++|+++.  ..-..-+-..|..|...     ++        .+.+..+...+.+++..+||+++..|..
T Consensus       107 QlLqtdd--~~E~~~V~~sL~sllk~-----Dp--------k~tl~~lf~~i~~~~e~~Rer~lkFi~~  160 (507)
T 3u0r_A          107 QLLQTDD--SAEFNLVNNALLSIFKM-----DA--------KGTLGGLFSQILQGEDIVRERAIKFLST  160 (507)
T ss_dssp             HHTTCCC--HHHHHHHHHHHHHHHHH-----CH--------HHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred             HHHhccc--hHHHHHHHHHHHHHHhc-----Ch--------HHHHHHHHHHHcccchHHHHHHHHHHHH
Confidence            9999763  21222233333333321     11        1333344444444566777777766643

>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}

Probab=92.62  E-value=4.4  Score=37.91  Aligned_cols=144  Identities=8%  Similarity=0.041  Sum_probs=97.6

Q ss_pred             HHHHHHHHHhhCCCCCHHHHHHHHHHHHhccCCCCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHHHH
Q 015951          126 QLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQK  205 (397)
Q Consensus       126 ~lmk~~i~~L~~~~~s~e~k~~AL~~L~~Lve~iDnA~~~~~lGGl~~Li~lL~s~~~~ir~~Aa~vLg~~aqNNp~~Q~  205 (397)
                      +.+-+++......  +.++|+..|....+++-+-|.+ -+-  .-++.++++-..++.++|...+..|..++...++.- 
T Consensus        15 ~~v~~lln~A~~~--~~~~kl~~L~qa~el~~~~dp~-ll~--~~l~~il~~~~~~~~~vrk~~~~Fi~e~~~~k~~l~-   88 (257)
T 3gs3_A           15 AKVVDWCNELVIA--SPSTKCELLAKVQETVLGSCAE-LAE--EFLESVLSLAHDSNMEVRKQVVAFVEQVCKVKVELL-   88 (257)
T ss_dssp             HHHHHHHHHHTTC--CHHHHHHHHHHHHHHHTTTTGG-GHH--HHHHHHHGGGGCSCHHHHHHHHHHHHHHHHHCGGGH-
T ss_pred             HHHHHHHHHhhhc--CcHHHHHHHHHHHHHHHccCHh-HHH--HHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHH-
Confidence            3444445544443  3479999999999976554432 222  356777777677899999999999999996655322 


Q ss_pred             HHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCc--------HH-------HHHHhhcCCCccHH
Q 015951          206 QVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAG--------DL-------MLQDILGNSSFEIR  270 (397)
Q Consensus       206 ~vl~~g~lp~Ll~LL~s~~~~v~~kAl~ALS~LiR~~~~~~~~f~~~gG--------i~-------~L~~lL~s~~~d~k  270 (397)
                          ...++.|..+++++++.+.++++.+.+++-   |...+.+...++        |.       .+...+.+.  +..
T Consensus        89 ----~~~l~~L~~Ll~d~d~~V~K~~I~~~~~iY---~~~l~~i~~~~~~~~~~~~~W~~m~~lK~~Il~~~~s~--n~g  159 (257)
T 3gs3_A           89 ----PHVINVVSMLLRDNSAQVIKRVIQACGSIY---KNGLQYLCSLMEPGDSAEQAWNILSLIKAQILDMIDNE--NDG  159 (257)
T ss_dssp             ----HHHHHHHHHHTTCSCHHHHHHHHHHHHHHH---HHHHHHHTTSSSCCHHHHHHHHHHHHHHHHHHHGGGSS--CHH
T ss_pred             ----HHHHHHHHHHHcCCCHHHHHHHHHHHHHHH---HHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHHccC--Ccc
Confidence                246788889999888889999998888873   344444444333        22       233445554  566


Q ss_pred             HHHHHHHHHHHHhh
Q 015951          271 LHRKAVSLVGDLAK  284 (397)
Q Consensus       271 lr~kA~~lL~~L~~  284 (397)
                      +|..+..++..+..
T Consensus       160 vkl~~iKF~e~vIl  173 (257)
T 3gs3_A          160 IRTNAIKFLEGVVV  173 (257)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHH
Confidence            88899988888763

>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B

Probab=92.46  E-value=1.3  Score=48.04  Aligned_cols=136  Identities=14%  Similarity=0.126  Sum_probs=86.0

Q ss_pred             CCHHHHHHHHHHHHhccCCCCchhHHHhcCCHHHHHHh---cCCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCcHHHH
Q 015951          140 LSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQ---LNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKL  216 (397)
Q Consensus       140 ~s~e~k~~AL~~L~~Lve~iDnA~~~~~lGGl~~Li~l---L~s~~~~ir~~Aa~vLg~~aqNNp~~Q~~vl~~g~lp~L  216 (397)
                      .+...++.++-.+.-+.+.++...    ..-++.+++.   +.++++.||..++|+||..+.--.... .++. ..++.|
T Consensus       461 ~~w~~~eaal~al~~i~~~~~~~~----~~~l~~l~~~l~~l~~~~~~vr~~~~~~l~~~~~~l~~~~-~~l~-~vl~~l  534 (963)
T 2x19_B          461 YSWQHTEALLYGFQSIAETIDVNY----SDVVPGLIGLIPRISISNVQLADTVMFTIGALSEWLADHP-VMIN-SVLPLV  534 (963)
T ss_dssp             CCHHHHHHHHHHHHHHTTSCCSSC----CSHHHHHHHHGGGSCCCSHHHHHHHHHHHHHTHHHHHHCH-HHHT-TTHHHH
T ss_pred             CchHHHHHHHHHHHHHHhhcCchh----hHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHhCH-HHHH-HHHHHH
Confidence            356778777777777766543211    1123334433   344688999999999999875211111 2333 689999


Q ss_pred             HHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhh
Q 015951          217 MKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAK  284 (397)
Q Consensus       217 l~LL~s~~~~v~~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klr~kA~~lL~~L~~  284 (397)
                      +..+.+  +.++..|++|+..+++..+.....++ ..-++.|..++.++..+.+.+..+..++..++.
T Consensus       535 ~~~l~~--~~V~~~A~~al~~l~~~~~~~l~p~~-~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~  599 (963)
T 2x19_B          535 LHALGN--PELSVSSVSTLKKICRECKYDLPPYA-ANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLS  599 (963)
T ss_dssp             HHHTTC--GGGHHHHHHHHHHHHHHTGGGCTTTH-HHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHT
T ss_pred             HHHhCC--chHHHHHHHHHHHHHHHHHHHHHhhH-HHHHHHHHHHhccCCCChHHHHHHHHHHHHHHh
Confidence            998865  67899999999999976543222221 123444555566533345678888888888875

>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1

Probab=92.30  E-value=4.1  Score=45.58  Aligned_cols=128  Identities=16%  Similarity=0.108  Sum_probs=64.4

Q ss_pred             HHHHHHHHHhcCCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhccCCCCchhHHHhcCCHHHHHHhcCC----CCHH
Q 015951          109 QMEIKELMEKLKTPSDAQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNH----PDTD  184 (397)
Q Consensus       109 ~~~L~ea~~~~~~~~d~~lmk~~i~~L~~~~~s~e~k~~AL~~L~~Lve~iDnA~~~~~lGGl~~Li~lL~s----~~~~  184 (397)
                      +.|+.+++-..+.+.-...|++.   +.+...+..+-..++-.+...+.+ + .      ..+..+..++.+    .++.
T Consensus       342 r~~~lDal~~aGT~~a~~~i~~~---i~~~~l~~~ea~~~l~~~~~~~~P-t-~------e~l~~~~~l~~~~~~~~~~~  410 (1056)
T 1lsh_A          342 RRWILDAVPAMATSEALLFLKRT---LASEQLTSAEATQIVASTLSNQQA-T-R------ESLSYARELLNTSFIRNRPI  410 (1056)
T ss_dssp             HHHHHHHHHHHCSHHHHHHHHHH---HHTTCSCHHHHHHHHHHHHHTCCC-C-H------HHHHHHHHHHTCHHHHTCHH
T ss_pred             HHHHHHHhHhcCCHHHHHHHHHH---HHcCCCCHHHHHHHHHHhhccCCC-C-H------HHHHHHHHHHhCcccccCHH
Confidence            46777777766654444444444   556666765544444433333321 1 1      123334455554    4677


Q ss_pred             HHHHHHHHHHHHhc----CChHHHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHHH
Q 015951          185 IRKISAWILGKASQ----NNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFY  250 (397)
Q Consensus       185 ir~~Aa~vLg~~aq----NNp~~Q~~vl~~g~lp~Ll~LL~s~~~~v~~kAl~ALS~LiR~~~~~~~~f~  250 (397)
                      +|..|.-++|+++.    +++.|...++. -....|.+.+.+.+.+.+..++.||+|+  ++|.....+.
T Consensus       411 l~~ta~La~gslV~k~c~~~~~c~~~~v~-~i~~~l~~~~~~~~~~~~~~~LkaLGN~--g~p~~l~~l~  477 (1056)
T 1lsh_A          411 LRKTAVLGYGSLVFRYCANTVSCPDELLQ-PLHDLLSQSSDRAKEEEIVLALKALGNA--GQPNSIKKIQ  477 (1056)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCSSCCGGGTH-HHHHHHHHHHHTTCHHHHHHHHHHHHHH--TCGGGHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhccCCCCCHHHHH-HHHHHHHHHHhcCChHHHHHHHHHhhcc--CChhHHHHHH
Confidence            78777777776653    33322211111 0122233334444555566777777776  3455444443

>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*

Probab=91.60  E-value=3.3  Score=41.18  Aligned_cols=197  Identities=13%  Similarity=0.116  Sum_probs=124.9

Q ss_pred             CHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhccCCCCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChH
Q 015951          123 SDAQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPL  202 (397)
Q Consensus       123 ~d~~lmk~~i~~L~~~~~s~e~k~~AL~~L~~Lve~iDnA~~~~~lGGl~~Li~lL~s~~~~ir~~Aa~vLg~~aqNNp~  202 (397)
                      +.-+.+-+++....... + ++|+..|..+.+++-+-|. .-+  -.-++.++++-..++.+||...+..|+.++...++
T Consensus        22 ~~~~~v~~lln~A~~~~-~-~~Kl~~L~q~~EL~l~~dp-sLl--~~fl~~il~f~~d~~~~vRk~~a~FieEa~~~~~e   96 (386)
T 3o2t_A           22 TTSERVVDLLNQAALIT-N-DSKITVLKQVQELIINKDP-TLL--DNFLDEIIAFQADKSIEVRKFVIGFIEEACKRDIE   96 (386)
T ss_dssp             CHHHHHHHHHHHHHHCC-S-THHHHHHHHHHHHHHTTCG-GGG--GGGHHHHHGGGGCSCHHHHHHHHHHHHHHHHHCGG
T ss_pred             cHHHHHHHHHHhhhccC-h-HHHHHHHHHHHHHHhccCH-HHH--HHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHH
Confidence            44555666666665533 2 5799999999997543332 111  24678899988888999999999999999975443


Q ss_pred             HHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCc--------HHH-------HHHhhcCCCc
Q 015951          203 VQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAG--------DLM-------LQDILGNSSF  267 (397)
Q Consensus       203 ~Q~~vl~~g~lp~Ll~LL~s~~~~v~~kAl~ALS~LiR~~~~~~~~f~~~gG--------i~~-------L~~lL~s~~~  267 (397)
                      .-     ..+++.|..|+.++++.+.++++.+.+++-   +...+.++..++        |..       +...+.+.  
T Consensus        97 l~-----~~~l~~L~~LL~d~d~~V~K~~I~~~tslY---pl~f~~i~~~~~~~~~~e~~W~~m~~lK~~Il~~~ds~--  166 (386)
T 3o2t_A           97 LL-----LKLIANLNMLLRDENVNVVKKAILTMTQLY---KVALQWMVKSRVISELQEACWDMVSAMAGDIILLLDSD--  166 (386)
T ss_dssp             GH-----HHHHHHHHHHHTCSSHHHHHHHHHHHHHHH---HHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHGGGCS--
T ss_pred             HH-----HHHHHHHHHHHcCCCHHHHHHHHHHHHHHH---HHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHhccC--
Confidence            32     236788888998888889899988888873   455555554443        322       33345554  


Q ss_pred             cHHHHHHHHHHHHHHhhchhcc-CCC--------------------Cc-chhHH--hCCcHHHHHHhccCC--ChHHHHH
Q 015951          268 EIRLHRKAVSLVGDLAKCQLEN-MHK--------------------VE-PPLFR--DRFFLKSVVDLTASA--DLDLQEK  321 (397)
Q Consensus       268 d~klr~kA~~lL~~L~~~~l~~-~~~--------------------~~-~~~l~--~~g~v~~Lv~lL~~~--d~dv~E~  321 (397)
                      +..+|..++.++..++.-+-.. .++                    -+ ...+.  -.+++..|+..+..+  +.-..-.
T Consensus       167 n~GVrl~aiKFle~VIl~qS~~~~d~~~p~~~~~d~SL~~VP~nHp~L~~~~Le~EA~~lLd~LL~~l~~~~iss~~l~a  246 (386)
T 3o2t_A          167 NDGIRTHAIKFVEGLIVTLSPRMADSEIPRRQEHDISLDRIPRDHPYIQYNVLWEEGKAALEQLLKFMVHPAISSINLTT  246 (386)
T ss_dssp             SHHHHHHHHHHHHHHHHHTSCCCTTCCCCGGGTTSCCGGGSCTTCSSSCHHHHHHHHHHHHHHHHHHTTC--CCHHHHHH
T ss_pred             CcchHHHHHHHHHHHHHHhCCCCCCcccccccCCCCCHhhCCCCCCcCCHHHHHHHHHHHHHHHHHHHcccccccHHHHH
Confidence            5678889998888776422100 010                    00 11122  246677777777764  3445566


Q ss_pred             HHHHHHHHhcCCh
Q 015951          322 ALAAIKNLLQLRT  334 (397)
Q Consensus       322 aL~aL~~L~~~~~  334 (397)
                      ++++|..++...+
T Consensus       247 ~lnsLa~Iak~RP  259 (386)
T 3o2t_A          247 ALGSLANIARQRP  259 (386)
T ss_dssp             HHHHHHHHHHHSG
T ss_pred             HHHHHHHHHHhcH
Confidence            7777777776544

>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}

Probab=91.56  E-value=9.8  Score=36.34  Aligned_cols=219  Identities=12%  Similarity=0.044  Sum_probs=118.3

Q ss_pred             CChHHHHHHHHH-hccccccccCCCCHHHHHHhHHHHHHHHHhcC--CCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHHH
Q 015951           77 SSIDGMLQWAIA-KLKETAQDVQRLSPSELKKRQMEIKELMEKLK--TPSDAQLIQIAIDDLNNSTLSLEDSQRALQELL  153 (397)
Q Consensus        77 ~~l~glLkwsi~-~~~~~~~~~~~~s~e~l~~r~~~L~ea~~~~~--~~~d~~lmk~~i~~L~~~~~s~e~k~~AL~~L~  153 (397)
                      -|++++++==-+ |.+  ....-+++|+++. ..+.+-..++.-.  .+++ ..+.-+.+.+   ..+.+.+.-++|-|+
T Consensus        55 an~~~i~~KL~EfN~~--~~~~~~Ls~~el~-~L~~l~~~l~~~s~~~~~~-~~l~~l~kil---~WP~~~~fPvLDLlR  127 (304)
T 3ebb_A           55 ANPTQILGKLKELNGT--APEEKKLTEDDLI-LLEKILSLICNSSSEKPTV-QQLQILWKAI---NCPEDIVFPALDILR  127 (304)
T ss_dssp             CCHHHHHHHHHHHHTT--SCGGGCCCHHHHH-HHHHHHHHHHTTCSSCCCH-HHHHHHHHHH---TSCTTTCHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHc--cccccCcCHHHHH-HHHHHHHHHhccCCCccch-HHHHHHHHHH---cCCHHhHHHHHHHHH
Confidence            357777663332 211  1112368998773 4444444443221  2332 2334444444   355677888999999


Q ss_pred             hccCCCCchhHHHhcCCHHHHH----HhcC-CCCHHHHHHHHHHHHHHhcCChHHHHHHHHc--CcHHHHHHhhcCCCHH
Q 015951          154 ILVEPIDNANDLSKLGGLSVLV----GQLN-HPDTDIRKISAWILGKASQNNPLVQKQVLEL--GALSKLMKMVKSSFVE  226 (397)
Q Consensus       154 ~Lve~iDnA~~~~~lGGl~~Li----~lL~-s~~~~ir~~Aa~vLg~~aqNNp~~Q~~vl~~--g~lp~Ll~LL~s~~~~  226 (397)
                      -.+-+.+.+..|..-+.-..++    ..++ ...+..+..++++++|+..+ +..++.++..  ..++.+...+.+.+..
T Consensus       128 l~~l~p~~~~~~~~~~~~~~l~~~l~~~~~~~~~p~n~ml~lR~l~NlF~~-~~g~~~l~~~~~~il~~~~~~~~~~nkn  206 (304)
T 3ebb_A          128 LSIKHPSVNENFCNEKEGAQFSSHLINLLNPKGKPANQLLALRTFCNCFVG-QAGQKLMMSQRESLMSHAIELKSGSNKN  206 (304)
T ss_dssp             HHTTSHHHHHHHHSTTTHHHHHHHHHHTTCTTSCHHHHHHHHHHHHHGGGS-HHHHHHHHHTHHHHHHHHHGGGSSCCHH
T ss_pred             HHHcCccHHHHhhccccchHHHHHHHHhcCCCCChHHHHHHHHHHHHccCC-chhHHHHHHHHHHHHHHHHHHhcCCChh
Confidence            8887666665665543333333    4443 24577899999999999975 5566666653  3455555555555667


Q ss_pred             HHHHHH---HHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHHhCCc
Q 015951          227 EAVKAL---YTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFF  303 (397)
Q Consensus       227 v~~kAl---~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klr~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~  303 (397)
                      ++..+.   +-++........ .+.-.  --...+..++... .+.....+++-++.+|+.     .+++..+.....|+
T Consensus       207 l~iA~ATl~~NlAv~~~~~~~-~~~~~--~ll~~l~~il~~~-~d~EalyR~LvALGtL~~-----~~~~~~~lak~l~~  277 (304)
T 3ebb_A          207 IHIALATLALNYSVCFHKDHN-IEGKA--QCLSLISTILEVV-QDLEATFRLLVALGTLIS-----DDSNAVQLAKSLGV  277 (304)
T ss_dssp             HHHHHHHHHHHHHHHHHHSCC-HHHHH--HHHHHHHHHHTTC-CCHHHHHHHHHHHHHHHT-----TCHHHHHHHHHTTH
T ss_pred             HHHHHHHHHHHHHHHHhhcCC-chHHH--HHHHHHHHHHhcc-CCHHHHHHHHHHHHHHHh-----CChhHHHHHHHcCH
Confidence            765443   333433322111 11111  1234444555543 355678889999999985     23333333344454


Q ss_pred             HHHHHHhcc
Q 015951          304 LKSVVDLTA  312 (397)
Q Consensus       304 v~~Lv~lL~  312 (397)
                      -..+-....
T Consensus       278 ~~~v~~~~~  286 (304)
T 3ebb_A          278 DSQIKKYSS  286 (304)
T ss_dssp             HHHGGGGGG
T ss_pred             HHHHHHHHh
Confidence            443333333

>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*

Probab=91.46  E-value=11  Score=36.77  Aligned_cols=149  Identities=15%  Similarity=0.125  Sum_probs=109.7

Q ss_pred             HHHHHHHHHHHHHHhcCChHHHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHHHhcC---cHHHHH
Q 015951          183 TDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEA---GDLMLQ  259 (397)
Q Consensus       183 ~~ir~~Aa~vLg~~aqNNp~~Q~~vl~~g~lp~Ll~LL~s~~~~v~~kAl~ALS~LiR~~~~~~~~f~~~g---Gi~~L~  259 (397)
                      +++--.+-.+|..++. ++.+-..++..+.+-.+.+.+..++=++..-|...+-.++..|+.....|+..+   =+....
T Consensus       137 ~diAl~~G~mLRecir-~e~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~  215 (341)
T 1upk_A          137 PEIALNCGIMLRECIR-HEPLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYE  215 (341)
T ss_dssp             TTTHHHHHHHHHHHHT-SHHHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHH
T ss_pred             chhHhHHHHHHHHHHH-hHHHHHHHhccHHHHHHHHHhcCCCchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHH
Confidence            3444455555566654 455777777777888888888887778888899899888888888777887765   345566


Q ss_pred             HhhcCCCccHHHHHHHHHHHHHHhhchhccCCCC-cchhHHhCCcHHHHHHhccCCChHHHHHHHHHHHHHhcCChHHH
Q 015951          260 DILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKV-EPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLRTTEA  337 (397)
Q Consensus       260 ~lL~s~~~d~klr~kA~~lL~~L~~~~l~~~~~~-~~~~l~~~g~v~~Lv~lL~~~d~dv~E~aL~aL~~L~~~~~~~r  337 (397)
                      .+|.++  +.=+|+.++-+|+.|....   ++.. ...++.+..-++.++.+|++....+|-.|-....-++..+...+
T Consensus       216 ~Ll~S~--NYVTkRQSlKLLgelLldr---~N~~vM~~Yis~~~nLkl~M~LL~d~sk~Iq~EAFhVFKvFVANP~K~~  289 (341)
T 1upk_A          216 KLLHSE--NYVTKRQSLKLLGELLLDR---HNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVANPNKTQ  289 (341)
T ss_dssp             HHTTCS--SHHHHHHHHHHHHHHHHSG---GGHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHCSSCCH
T ss_pred             HHhcCC--cchhHHHHHHHHHHHHhCc---hHHHHHHHHhCCHHHHHHHHHHhcCchhchhhhhhhheeeeeeCCCCCh
Confidence            778887  4458999999999998631   1211 22344556778889999999999999999999999998865433

>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A

Probab=91.09  E-value=6  Score=43.25  Aligned_cols=193  Identities=9%  Similarity=0.092  Sum_probs=115.1

Q ss_pred             HHHHHhhCCC-CCHHHHHHHHHHHHhccCCCCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCC-------h
Q 015951          130 IAIDDLNNST-LSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNN-------P  201 (397)
Q Consensus       130 ~~i~~L~~~~-~s~e~k~~AL~~L~~Lve~iDnA~~~~~lGGl~~Li~lL~s~~~~ir~~Aa~vLg~~aqNN-------p  201 (397)
                      ..+..+.++. ..+--|..|+..+..+.+.+. ...+.  ..++.++..|.++++.||..||++|.+++.+.       +
T Consensus       459 ~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~~~-~~~l~--~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~~~~~~~~~~  535 (960)
T 1wa5_C          459 EIAPDLTSNNIPHIILRVDAIKYIYTFRNQLT-KAQLI--ELMPILATFLQTDEYVVYTYAAITIEKILTIRESNTSPAF  535 (960)
T ss_dssp             HTHHHHHCSSCSCHHHHHHHHHHHHHTGGGSC-HHHHH--HHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBSCSSSCCB
T ss_pred             HhHHHhcCCCCCCceehHHHHHHHHHHHhhCC-HHHHH--HHHHHHHHHhCCCChhHHHHHHHHHHHHHhcccccccccc
Confidence            3555566542 256678889999998888763 22222  35778888888889999999999999988741       1


Q ss_pred             H-HHHHHHH--cCcHHHHHHhhcCCC---HH--HHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhh----cCCCccH
Q 015951          202 L-VQKQVLE--LGALSKLMKMVKSSF---VE--EAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDIL----GNSSFEI  269 (397)
Q Consensus       202 ~-~Q~~vl~--~g~lp~Ll~LL~s~~---~~--v~~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL----~s~~~d~  269 (397)
                      . .+..+..  ...++.|+.++....   ..  ....++.||+.++...+.....++. .-++.|...+    +++ .+.
T Consensus       536 ~~~~~~l~p~l~~ll~~L~~ll~~~~~~~~~~~~~e~l~~al~~vv~~~~~~~~p~~~-~l~~~L~~~l~~~~~~~-~~~  613 (960)
T 1wa5_C          536 IFHKEDISNSTEILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSEDSIQPLFP-QLLAQFIEIVTIMAKNP-SNP  613 (960)
T ss_dssp             SSCGGGTTTTHHHHHHHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHHHTTTTGGGHH-HHHHHHHHHHHHHTTSC-CCH
T ss_pred             cccHHHhhhhHHHHHHHHHHHHHhccCCCCcccccHHHHHHHHHHHHHHHHhhhhHHH-HHHHHHHHHHHHHHhCC-CCc
Confidence            1 1222211  135667777777641   11  2345667776665543332222221 1223333333    333 355


Q ss_pred             HHHHHHHHHHHHHhhchhccCCCCcchhHHhCCcHHHHHHhccCCChHHHHHHHHHHHHHhcC
Q 015951          270 RLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQL  332 (397)
Q Consensus       270 klr~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~dv~E~aL~aL~~L~~~  332 (397)
                      .++..+..+|+.++..    .+++....+ ...+++.+...|.....++.+.+...+..+...
T Consensus       614 ~~~~~~~e~l~~l~~~----~~~~~~~~~-~~~~~p~~~~iL~~~~~~~~~~~~~i~~~l~~~  671 (960)
T 1wa5_C          614 RFTHYTFESIGAILNY----TQRQNLPLL-VDSMMPTFLTVFSEDIQEFIPYVFQIIAFVVEQ  671 (960)
T ss_dssp             HHHHHHHHHHHHHHHT----SCGGGHHHH-HHHHHHHHHHHHHTTCTTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhc----CCcchHHHH-HHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHh
Confidence            6777788888888862    233333322 334566777777776667777788777777643

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=90.99  E-value=1.6  Score=48.44  Aligned_cols=173  Identities=10%  Similarity=0.045  Sum_probs=111.7

Q ss_pred             HHHHHHHHHHHhccCC-CCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCh---HHHHHHHHcCcHHHHHH
Q 015951          143 EDSQRALQELLILVEP-IDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNP---LVQKQVLELGALSKLMK  218 (397)
Q Consensus       143 e~k~~AL~~L~~Lve~-iDnA~~~~~lGGl~~Li~lL~s~~~~ir~~Aa~vLg~~aqNNp---~~Q~~vl~~g~lp~Ll~  218 (397)
                      +++..|...+..++.. +.. ..+. .+.+..|...+......  +.|+.+++.+|+..+   ...-.++  +.+|.++.
T Consensus        29 ~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~k~~~--~~a~~~~~~~~~~~~~~~~~e~~~~--~~~~~~~~  102 (986)
T 2iw3_A           29 DNRHEIASEVASFLNGNIIE-HDVP-EHFFGELAKGIKDKKTA--ANAMQAVAHIANQSNLSPSVEPYIV--QLVPAICT  102 (986)
T ss_dssp             TTHHHHHHHHHHHHTSSCSS-SSCC-HHHHHHHHHHHTSHHHH--HHHHHHHHHHTCTTTCCTTTHHHHH--TTHHHHHH
T ss_pred             hHHHHHHHHHHHHHhccccc-cccc-hhHHHHHHHHHhccCCH--HHHHHHHHHHHHhcCCCCCcccchH--HHHHHHHH
Confidence            3455566666665542 221 1111 35667777777664444  999999999996542   2323333  68999999


Q ss_pred             hhcCCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhH
Q 015951          219 MVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLF  298 (397)
Q Consensus       219 LL~s~~~~v~~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klr~kA~~lL~~L~~~~l~~~~~~~~~~l  298 (397)
                      .+.+....||..|-+|+-+++...++..-    ..-++.|...|.+.. .=..+.-|+.++..|+..    . +... ..
T Consensus       103 ~~~dk~~~v~~aa~~~~~~~~~~~~~~a~----~~~~~~~~~~~~~~~-kw~~k~~~l~~~~~~~~~----~-~~~~-~~  171 (986)
T 2iw3_A          103 NAGNKDKEIQSVASETLISIVNAVNPVAI----KALLPHLTNAIVETN-KWQEKIAILAAFSAMVDA----A-KDQV-AL  171 (986)
T ss_dssp             HTTCSSHHHHHHHHHHHHHHHHHSCGGGH----HHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHHH----S-HHHH-HH
T ss_pred             HhcCCchHHHHHHHHHHHHHHHhCCHHHH----HHHHHHHHHHhcccc-chHHHHHHHHHHHHHHHH----h-HHHH-HH
Confidence            99988889999999999999887655322    234788888887542 345677888899999852    1 1111 11


Q ss_pred             HhCCcHHHHHHhccCCChHHHHHHHHHHHHHhcC
Q 015951          299 RDRFFLKSVVDLTASADLDLQEKALAAIKNLLQL  332 (397)
Q Consensus       299 ~~~g~v~~Lv~lL~~~d~dv~E~aL~aL~~L~~~  332 (397)
                      .=..++|.+.+.+....+++...|..++..++..
T Consensus       172 ~~~~~~p~~~~~~~d~k~~v~~~~~~~~~~~~~~  205 (986)
T 2iw3_A          172 RMPELIPVLSETMWDTKKEVKAAATAAMTKATET  205 (986)
T ss_dssp             HHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHGGG
T ss_pred             hccchhcchHhhcccCcHHHHHHHHHHHHHHHhc
Confidence            1134566666667666777777777777666653

>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}

Probab=90.90  E-value=1  Score=49.21  Aligned_cols=134  Identities=12%  Similarity=0.054  Sum_probs=82.9

Q ss_pred             CCHHHHHHHHHHHHHHhcCChHHHHHHHHcCcHHHHHHhh---c--CCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcH
Q 015951          181 PDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMV---K--SSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGD  255 (397)
Q Consensus       181 ~~~~ir~~Aa~vLg~~aqNNp~~Q~~vl~~g~lp~Ll~LL---~--s~~~~v~~kAl~ALS~LiR~~~~~~~~f~~~gGi  255 (397)
                      ++-..+..|..++|.++..-+...     ...++.++.++   .  +..+.+|..++++|+.+........ .+. ..-+
T Consensus       476 ~~w~~~eaal~~l~~iae~~~~~~-----~~~l~~l~~~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~~-~~l-~~vl  548 (971)
T 2x1g_F          476 THWTKLEACIYSFQSVAEHFGGEE-----KRQIPRLMRVLAEIPYEKLNVKLLGTALETMGSYCNWLMENP-AYI-PPAI  548 (971)
T ss_dssp             TCCHHHHHHHHHHHHTTTC-----------CHHHHHHHHHHHSCTTTSCHHHHHHHHHHHHHTHHHHC-----CH-HHHH
T ss_pred             CcHHHHHHHHHHHHHHHhhcChhh-----hHHHHHHHHHHHhcCccccCHHHHHHHHHHHHHHHHHHhcCH-HHH-HHHH
Confidence            456789999999999997644322     13445444433   3  2367889999999998764322111 111 1234


Q ss_pred             HHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHHhCCcHHHHHHhccCC--ChHHHHHHHHHHHHHhcC
Q 015951          256 LMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASA--DLDLQEKALAAIKNLLQL  332 (397)
Q Consensus       256 ~~L~~lL~s~~~d~klr~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~--d~dv~E~aL~aL~~L~~~  332 (397)
                      +.|...|.     .+++..|++++.+|+..    ......+.+  ..++..+..++..+  +.+.++.+..++..++..
T Consensus       549 ~~l~~~l~-----~~v~~~A~~al~~l~~~----~~~~l~p~~--~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~  616 (971)
T 2x1g_F          549 NLLVRGLN-----SSMSAQATLGLKELCRD----CQLQLKPYA--DPLLNACHASLNTGRMKNSDSVRLMFSIGKLMSL  616 (971)
T ss_dssp             HHHHHHHH-----SSCHHHHHHHHHHHHHH----CHHHHHHHH--HHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHhC-----hHHHHHHHHHHHHHHHH----HHHhccccH--HHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHh
Confidence            55666662     24799999999999952    221222222  24555666677763  678999999999999875

>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2

Probab=90.49  E-value=1.2  Score=38.26  Aligned_cols=70  Identities=11%  Similarity=0.096  Sum_probs=56.2

Q ss_pred             HHHHhcCCCCHHHHHHHHHHHHHHhcCC-hHHHHHHHHcCcHHHHHHhhcC------CCHHHHHHHHHHHHHHhcCC
Q 015951          173 VLVGQLNHPDTDIRKISAWILGKASQNN-PLVQKQVLELGALSKLMKMVKS------SFVEEAVKALYTVSSLIRNN  242 (397)
Q Consensus       173 ~Li~lL~s~~~~ir~~Aa~vLg~~aqNN-p~~Q~~vl~~g~lp~Ll~LL~s------~~~~v~~kAl~ALS~LiR~~  242 (397)
                      .|..-|++.++.++..|..+|-++++|. +.++..|.....+..|++++..      .+..|+.|.+.-|-+-...+
T Consensus        42 ai~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~f  118 (148)
T 1mhq_A           42 LLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSWTVWF  118 (148)
T ss_dssp             HHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHHHHHc
Confidence            3445568899999999999999999994 6788888888999999999974      35688988877776654333

>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B

Probab=90.10  E-value=1.1  Score=39.09  Aligned_cols=67  Identities=12%  Similarity=0.129  Sum_probs=53.3

Q ss_pred             HHHHhcCCCCHHHHHHHHHHHHHHhcCC-hHHHHHHHHcCcHHHHHHhhcC-CCHHHHHHHHHHHHHHh
Q 015951          173 VLVGQLNHPDTDIRKISAWILGKASQNN-PLVQKQVLELGALSKLMKMVKS-SFVEEAVKALYTVSSLI  239 (397)
Q Consensus       173 ~Li~lL~s~~~~ir~~Aa~vLg~~aqNN-p~~Q~~vl~~g~lp~Ll~LL~s-~~~~v~~kAl~ALS~Li  239 (397)
                      .|..-|++.++.++..|..+|-++++|. +..+..|.....+..|++++.. .++.|+.|++..|-.-.
T Consensus        56 al~krl~~~n~~vql~AL~LLd~~vkNcG~~Fh~evas~~Fl~el~~l~~~~~~~~Vk~kil~li~~W~  124 (163)
T 1x5b_A           56 AIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEVCSRDFATEVRAVIKNKAHPKVCEKLKSLMVEWS  124 (163)
T ss_dssp             HHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHHHHHHTSHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHHH
Confidence            3445678889999999999999999995 6688788877888889998875 34688888877665543

>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0

Probab=89.80  E-value=1.3  Score=37.65  Aligned_cols=67  Identities=13%  Similarity=0.157  Sum_probs=52.8

Q ss_pred             HHHHhcCCCCHHHHHHHHHHHHHHhcCC-hHHHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHh
Q 015951          173 VLVGQLNHPDTDIRKISAWILGKASQNN-PLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLI  239 (397)
Q Consensus       173 ~Li~lL~s~~~~ir~~Aa~vLg~~aqNN-p~~Q~~vl~~g~lp~Ll~LL~s~~~~v~~kAl~ALS~Li  239 (397)
                      .|..-|++.++.++..|..+|-++++|. +..+..+.....+..|+++++..++.|+.+.+..|-+-.
T Consensus        46 ai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~f~~evas~~Fl~el~~l~~~~~~~Vk~kil~li~~W~  113 (140)
T 3ldz_A           46 SIMRRVNHKDPHVAMQALTLLGACVSNCGKIFHLEVCSRDFASEVSNVLNKGHPKVCEKLKALMVEWT  113 (140)
T ss_dssp             HHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHHHHHHHHHHSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHcCCChHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHhccCCHHHHHHHHHHHHHHH
Confidence            3445577889999999999999999996 557777777778888888887777888888877766543

>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*

Probab=89.56  E-value=1.3  Score=39.06  Aligned_cols=71  Identities=15%  Similarity=0.105  Sum_probs=56.9

Q ss_pred             HHHHHhcCCCCHHHHHHHHHHHHHHhcCC-hHHHHHHHHcCcHHHHHHhhcC------CCHHHHHHHHHHHHHHhcCC
Q 015951          172 SVLVGQLNHPDTDIRKISAWILGKASQNN-PLVQKQVLELGALSKLMKMVKS------SFVEEAVKALYTVSSLIRNN  242 (397)
Q Consensus       172 ~~Li~lL~s~~~~ir~~Aa~vLg~~aqNN-p~~Q~~vl~~g~lp~Ll~LL~s------~~~~v~~kAl~ALS~LiR~~  242 (397)
                      ..|..-|++.++.++..|..+|-++++|. +.++..|.....+..|++++..      .+..|+.|++..|-.-...+
T Consensus        53 ral~krl~~~n~~vql~AL~LLd~~vkNCG~~Fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~f  130 (171)
T 1juq_A           53 RLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTKVIELLYSWTMAL  130 (171)
T ss_dssp             HHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHHHc
Confidence            34556678899999999999999999995 5688888888899999999973      24688998888777654433

>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B

Probab=89.22  E-value=3.5  Score=45.59  Aligned_cols=147  Identities=12%  Similarity=0.077  Sum_probs=82.5

Q ss_pred             CCHHHHHHHHHHHHHHhcCChHHHHHHHHcCcHHHHHHhhcCC----C-HHHHHHHHHHHHHHhcCChhcHHHHHhcCcH
Q 015951          181 PDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSS----F-VEEAVKALYTVSSLIRNNLAGQEMFYVEAGD  255 (397)
Q Consensus       181 ~~~~ir~~Aa~vLg~~aqNNp~~Q~~vl~~g~lp~Ll~LL~s~----~-~~v~~kAl~ALS~LiR~~~~~~~~f~~~gGi  255 (397)
                      .+-..+..|++++|.++.......+.-+-...++.|+.+....    + +-++..++|+++...+-.... ..++ ..-+
T Consensus       465 ~~W~~~eaal~algsia~~~~~~~e~~~l~~v~~~l~~l~~~~~~~~~~~~v~~~~~~~lgry~~~~~~~-~~~l-~~vl  542 (1049)
T 3m1i_C          465 WSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLTVKKRGKDNKAVVASDIMYVVGQYPRFLKAH-WNFL-RTVI  542 (1049)
T ss_dssp             CCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHCHHHHHHC-HHHH-HHHH
T ss_pred             CCHHHHHHHHHHHHHHhcccCchhhHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHHhH-HHHH-HHHH
Confidence            5667899999999999865443322111122455555544321    1 234446889998765432221 1222 2345


Q ss_pred             HHHHHhhcCCCccHHHHHHHHHHHHHHhhchh---c-cCCCCcchhHHhCCcHHHHHHhccCCChHHHHHHHHHHHHHhc
Q 015951          256 LMLQDILGNSSFEIRLHRKAVSLVGDLAKCQL---E-NMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQ  331 (397)
Q Consensus       256 ~~L~~lL~s~~~d~klr~kA~~lL~~L~~~~l---~-~~~~~~~~~l~~~g~v~~Lv~lL~~~d~dv~E~aL~aL~~L~~  331 (397)
                      +.|...+.++  +.+++..|++++.+++..-.   . .......+.+  ..++..+..++...+.+-......|+..++.
T Consensus       543 ~~ll~~l~~~--~~~V~~~A~~al~~l~~~~~~~l~~~~~~~~~p~~--~~il~~l~~~~~~~~~~~~~~~~eai~~ii~  618 (1049)
T 3m1i_C          543 LKLFEFMHET--HEGVQDMACDTFIKIVQKCKYHFVIQQPRESEPFI--QTIIRDIQKTTADLQPQQVHTFYKACGIIIS  618 (1049)
T ss_dssp             HHHHHHTTSS--CHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHH--HHHHHTHHHHHTTSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhcCC--CHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCcHH--HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence            6677777765  57899999999999996310   0 0000001111  1234444455555566666777788888776


Q ss_pred             CC
Q 015951          332 LR  333 (397)
Q Consensus       332 ~~  333 (397)
                      ..
T Consensus       619 ~~  620 (1049)
T 3m1i_C          619 EE  620 (1049)
T ss_dssp             TC
T ss_pred             cC
Confidence            54

>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}

Probab=87.79  E-value=15  Score=33.67  Aligned_cols=145  Identities=14%  Similarity=0.020  Sum_probs=93.0

Q ss_pred             HHHhcCCCCHHHHHHHHHHHHHHhcCChHHHH--H-HHHcC-cHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhc---H
Q 015951          174 LVGQLNHPDTDIRKISAWILGKASQNNPLVQK--Q-VLELG-ALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAG---Q  246 (397)
Q Consensus       174 Li~lL~s~~~~ir~~Aa~vLg~~aqNNp~~Q~--~-vl~~g-~lp~Ll~LL~s~~~~v~~kAl~ALS~LiR~~~~~---~  246 (397)
                      +-+-|.|.+=..|..|..-|..+.++++....  . +...+ ..+.+-+.+.+.+..+..+++.+|..++......   .
T Consensus        14 l~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~~~~   93 (278)
T 4ffb_C           14 LEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNSLIDAFASSSLKN   93 (278)
T ss_dssp             HHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC---CCH
T ss_pred             HHHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhccc
Confidence            44678899999999999999999887664321  1 11233 3455557888888899999999999988754322   1


Q ss_pred             HHHH--hcCcHHHHHH-hhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHHhCCcHHHHHHhccCCChHHHHHHH
Q 015951          247 EMFY--VEAGDLMLQD-ILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKAL  323 (397)
Q Consensus       247 ~~f~--~~gGi~~L~~-lL~s~~~d~klr~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~dv~E~aL  323 (397)
                      ..+.  -..-++.|+. ++.+.  ..+++..+..++..++..    ..  ...     .+++.+...+.+.++.++..++
T Consensus        94 ~~~~~~~~~~l~~lveK~l~~~--k~~~~~~a~~~l~~~~~~----~~--~~~-----~~~e~l~~~l~~Knpkv~~~~l  160 (278)
T 4ffb_C           94 AHNITLISTWTPLLVEKGLTSS--RATTKTQSMSCILSLCGL----DT--SIT-----QSVELVIPFFEKKLPKLIAAAA  160 (278)
T ss_dssp             HHHHHHHHHHHHHHHHHTSSCC--CHHHHHHHHHHHHHHHHT----SS--SSH-----HHHHHHGGGGGCSCHHHHHHHH
T ss_pred             chhHHHHHHHHHHHHHHHhcCc--cHHHHHHHHHHHHHHHHh----cC--cHH-----HHHHHHHHHHhccCHHHHHHHH
Confidence            1121  1233455553 46655  456888888888887741    11  111     1345566677888889998888


Q ss_pred             HHHHHHhc
Q 015951          324 AAIKNLLQ  331 (397)
Q Consensus       324 ~aL~~L~~  331 (397)
                      ..|..+..
T Consensus       161 ~~l~~~l~  168 (278)
T 4ffb_C          161 NCVYELMA  168 (278)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            88887764

>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B

Probab=87.49  E-value=10  Score=42.24  Aligned_cols=111  Identities=12%  Similarity=0.073  Sum_probs=73.9

Q ss_pred             CCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhccCCCCchhHHHhcCCHHHHHHhc-CCCCHHHHHHHHHHHHHHhc
Q 015951          120 KTPSDAQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQL-NHPDTDIRKISAWILGKASQ  198 (397)
Q Consensus       120 ~~~~d~~lmk~~i~~L~~~~~s~e~k~~AL~~L~~Lve~iDnA~~~~~lGGl~~Li~lL-~s~~~~ir~~Aa~vLg~~aq  198 (397)
                      ..|-|.+.+.+++..+-++.  .+.|..|-+.|..+-.+.         ++|..+..+| ++.++.+|..|+.+|-+..+
T Consensus        10 ~~~~dv~~Le~av~~ly~p~--~~~r~~A~~~L~~~q~sp---------~aw~~~~~iL~~s~~~~vR~faa~~Lk~~I~   78 (1023)
T 4hat_C           10 SNDLDIALLDQVVSTFYQGS--GVQQKQAQEILTKFQDNP---------DAWQKADQILQFSTNPQSKFIALSILDKLIT   78 (1023)
T ss_dssp             TSCCCHHHHHHHHHHHHHCC--HHHHHHHHHHHHHHHHCT---------TGGGGHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHhCCC--hHHHHHHHHHHHHHHcCc---------cHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Confidence            45667777888888877764  346777777776544443         4677777777 45688999999999998887


Q ss_pred             C----ChHHHHHHHHcCcHHHHHHhhcCC-----CHHHHHHHHHHHHHHhcC
Q 015951          199 N----NPLVQKQVLELGALSKLMKMVKSS-----FVEEAVKALYTVSSLIRN  241 (397)
Q Consensus       199 N----Np~~Q~~vl~~g~lp~Ll~LL~s~-----~~~v~~kAl~ALS~LiR~  241 (397)
                      .    -|.-+...++...+..+.+...++     ...++.|...+++.+++.
T Consensus        79 ~~W~~L~~e~~~~Ir~~Ll~~l~~~~~~~~~i~~~~~i~nKLa~~la~I~~~  130 (1023)
T 4hat_C           79 RKWKLLPNDHRIGIRNFVVGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQ  130 (1023)
T ss_dssp             HHGGGSCHHHHHHHHHHHHHHHHHHHHSHHHHHHCHHHHHHHHHHHHHHHHH
T ss_pred             hhhhcCCHHHHHHHHHHHHHHHHHhcCCcccccccHHHHHHHHHHHHHHHHH
Confidence            4    244444555555666666654332     234566777777777664

>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5

Probab=87.48  E-value=0.31  Score=45.46  Aligned_cols=44  Identities=16%  Similarity=0.145  Sum_probs=26.8

Q ss_pred             HHHHhcCCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHH
Q 015951          173 VLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYT  234 (397)
Q Consensus       173 ~Li~lL~s~~~~ir~~Aa~vLg~~aqNNp~~Q~~vl~~g~lp~Ll~LL~s~~~~v~~kAl~A  234 (397)
                      .+..+++++++.||..|+..++                  .+.|..++.+++..||..+...
T Consensus        78 ~l~~L~~D~~~~VR~~aA~~L~------------------~~~L~~ll~D~d~~VR~~aA~~  121 (244)
T 1lrv_A           78 ALTPLIRDSDEVVRRAVAYRLP------------------REQLSALMFDEDREVRITVADR  121 (244)
T ss_dssp             GGGGGTTCSSHHHHHHHHTTSC------------------SGGGGGTTTCSCHHHHHHHHHH
T ss_pred             HHHHHccCcCHHHHHHHHHHCC------------------HHHHHHHHcCCCHHHHHHHHHh
Confidence            3446667888888888886431                  1345556666566666555553

>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B

Probab=87.16  E-value=11  Score=41.75  Aligned_cols=69  Identities=13%  Similarity=0.071  Sum_probs=43.2

Q ss_pred             CCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhccCCCCchhHHHhcCCHHHHHHhc-CCCCHHHHHHHHHHHHHHhc
Q 015951          120 KTPSDAQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQL-NHPDTDIRKISAWILGKASQ  198 (397)
Q Consensus       120 ~~~~d~~lmk~~i~~L~~~~~s~e~k~~AL~~L~~Lve~iDnA~~~~~lGGl~~Li~lL-~s~~~~ir~~Aa~vLg~~aq  198 (397)
                      +.|.+.+.+.+++..+-+++  .+.+..|-+.|..+-.+.         ++|..+..+| ++.++.+|..|+.+|-+..+
T Consensus        10 ~~~~~~~~l~~~l~~~~~p~--~~~r~~Ae~~L~~~~~~p---------~~~~~l~~iL~~s~~~~vr~~aa~~Lk~~i~   78 (1049)
T 3m1i_C           10 SNDLDIALLDQVVSTFYQGS--GVQQKQAQEILTKFQDNP---------DAWQKADQILQFSTNPQSKFIALSILDKLIT   78 (1049)
T ss_dssp             TSCCCHHHHHHHHHHHHHCC--HHHHHHHHHHHHHHHHST---------TGGGGHHHHHHHCSCHHHHHHHHHHHHHHHH
T ss_pred             CCcccHHHHHHHHHHHhCCC--hHHHHHHHHHHHHHHhCc---------hHHHHHHHHHhhCCCHHHHHHHHHHHHHHHH
Confidence            34556666777777666654  345666666665543332         3566666666 35677888888888887764


Q ss_pred             C
Q 015951          199 N  199 (397)
Q Consensus       199 N  199 (397)
                      .
T Consensus        79 ~   79 (1049)
T 3m1i_C           79 R   79 (1049)
T ss_dssp             H
T ss_pred             h
Confidence            3

>3c2g_A SYS-1 protein; beta-catenin, phylogeny, SYS-1, developmental protein, DNA-binding, nucleus; 2.50A {Caenorhabditis elegans} PDB: 3c2h_A*

Probab=87.07  E-value=3.7  Score=40.65  Aligned_cols=183  Identities=15%  Similarity=0.197  Sum_probs=124.8

Q ss_pred             HHHHHHHHhccCCCCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCcHHHHHHhhc-CCC
Q 015951          146 QRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVK-SSF  224 (397)
Q Consensus       146 ~~AL~~L~~Lve~iDnA~~~~~lGGl~~Li~lL~s~~~~ir~~Aa~vLg~~aqNNp~~Q~~vl~~g~lp~Ll~LL~-s~~  224 (397)
                      .++++-|--|.|+.+--+-|++..|+..+-...+.++.++-...+..+-.++-.-.-|..  --...+|.+++.+. +++
T Consensus       261 tR~FDLL~LLmHdSnAIDGFVk~DGv~~I~TvinYpN~~l~RaG~KLLLQVSDaksL~~t--~L~e~LPFi~~~i~~h~e  338 (619)
T 3c2g_A          261 IRTFDLLGLLLHDSDAIDGFVRSDGVGAITTVVQYPNNDLIRAGCKLLLQVSDAKALAKT--PLENILPFLLRLIEIHPD  338 (619)
T ss_dssp             HHHHHHHHHHCCSHHHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHTTCGGGGTS--CCTTHHHHHHHHHHHCCC
T ss_pred             HHHHHHHHHHhcccccccceeecccceeEEEEeecCCcHHHHhhhheeeeecchHHHhhc--cccccchHHHHHhccCCC
Confidence            457777777888877778899999999999999999999999999998877643221111  11357899998886 556


Q ss_pred             HHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcC-C----CccHHHHHHHHHHHHHHhhch---h------ccC
Q 015951          225 VEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGN-S----SFEIRLHRKAVSLVGDLAKCQ---L------ENM  290 (397)
Q Consensus       225 ~~v~~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s-~----~~d~klr~kA~~lL~~L~~~~---l------~~~  290 (397)
                      +++.-....-||+.+.|..+..+.-+..|++..|...+.. +    =.+-.-|..|+..++|-...-   +      .++
T Consensus       339 DdvvYSGTGFLSNVVAHKq~VKelAI~~nAI~LLh~~I~ky~~Lsdf~ea~Kkk~aC~IicN~LRalNNFLMmWIPm~NG  418 (619)
T 3c2g_A          339 DEVIYSGTGFLSNVVAHKQHVKDIAIRSNAIFLLHTIISKYPRLDELTDAPKRNRVCEIICNCLRTLNNFLMMWIPTPNG  418 (619)
T ss_dssp             HHHHHHHHHHHHHHSTTCHHHHHHHHHTTHHHHHHHHHHTSCCGGGCCSHHHHHHHHHHHHHHHHHHHHHHGGGSCCTTS
T ss_pred             cceEEecchHHHHHHhcccchHHHHhccCcHHHHHHHHhhCCChhhhhhhhhhcchHHHHHHHHHHHhhheeEEEecCCC
Confidence            7888899999999999999988888999999999888642 1    123334666777776644310   0      011


Q ss_pred             C-----C---CcchhHHhCCcHHHHHHhccCC--C----hHHHHHHHHHHHHHh
Q 015951          291 H-----K---VEPPLFRDRFFLKSVVDLTASA--D----LDLQEKALAAIKNLL  330 (397)
Q Consensus       291 ~-----~---~~~~~l~~~g~v~~Lv~lL~~~--d----~dv~E~aL~aL~~L~  330 (397)
                      .     +   ...-.|++..+++.|+..|+.+  |    .+++...++...-++
T Consensus       419 qr~~~G~~EqQQVckFIE~d~LKrLMtCLS~e~fDv~~LlELRSTILR~F~Lvl  472 (619)
T 3c2g_A          419 ETKTAGPNEKQQVCKFIEIDILKKLMSCLSCEGMDTPGLLELRSTILRSFILLL  472 (619)
T ss_dssp             CCCCCCHHHHHHHHGGGSHHHHHHHHHHHHCCC-CCTTHHHHHHHHHHHHHHHH
T ss_pred             ccccCChHHHHHHHHHHHHHHHHHHHHHhcccccCcchHHHHHHHHHHHHHHHh
Confidence            1     0   1112456667888888887654  2    244555555444333

>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A

Probab=86.76  E-value=17  Score=40.75  Aligned_cols=110  Identities=14%  Similarity=0.085  Sum_probs=75.7

Q ss_pred             CCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhccCCCCchhHHHhcCCHHHHHHhcC-CCCHHHHHHHHHHHHHHhcC
Q 015951          121 TPSDAQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLN-HPDTDIRKISAWILGKASQN  199 (397)
Q Consensus       121 ~~~d~~lmk~~i~~L~~~~~s~e~k~~AL~~L~~Lve~iDnA~~~~~lGGl~~Li~lL~-s~~~~ir~~Aa~vLg~~aqN  199 (397)
                      .+-|.+.+.+++..+-++  +.+.|..|-+.|..+-.+.+         +|..+..+|. +.++.+|..|+.+|-+..+.
T Consensus        23 ~~~Dv~~Le~lv~~ly~p--~~~~r~qA~~~L~q~q~sp~---------aw~~~~~iL~~s~~~~vR~fAa~~L~~~I~~   91 (1073)
T 3gjx_A           23 QKLDINLLDNVVNCLYHG--EGAQQRMAQEVLTHLKEHPD---------AWTRVDTILEFSQNMNTKYYGLQILENVIKT   91 (1073)
T ss_dssp             CCCSHHHHHHHHHTTTCS--SHHHHHHHHHHHHTSSCCSC---------HHHHHTCC---CCSHHHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHhCC--CHHHHHHHHHHHHHHHcCch---------HHHHHHHHhcCCCCHHHHHHHHHHHHHHHHh
Confidence            445677777888877666  46778888888877665443         6777777774 46899999999999999874


Q ss_pred             C----hHHHHHHHHcCcHHHHHHhhcCC-----CHHHHHHHHHHHHHHhcC
Q 015951          200 N----PLVQKQVLELGALSKLMKMVKSS-----FVEEAVKALYTVSSLIRN  241 (397)
Q Consensus       200 N----p~~Q~~vl~~g~lp~Ll~LL~s~-----~~~v~~kAl~ALS~LiR~  241 (397)
                      +    |.-+...++...+..+.+...++     +..++.|...+++.+++.
T Consensus        92 ~W~~L~~e~~~~LR~~Ll~~l~~~~~~~~~~e~~~~vinKLa~~La~I~k~  142 (1073)
T 3gjx_A           92 RWKILPRNQCEGIKKYVVGLIIKTSSDPTCVEKEKVYIGKLNMILVQILKQ  142 (1073)
T ss_dssp             TGGGSCHHHHHHHHHHHHHHHHHHHTCGGGGTSCHHHHHHHHHHHHHHHHH
T ss_pred             hhhhCCHHHHHHHHHHHHHHHHHHccCccccccchHHHHHHHHHHHHHHHH
Confidence            2    44455555555667666654432     345667777788877664

>3qml_C Protein SLS1, nucleotide exchange factor SIL1; armadillo like repeats, chaperone-protein transport complex; 2.31A {Saccharomyces cerevisiae}

Probab=86.39  E-value=5.5  Score=38.35  Aligned_cols=130  Identities=15%  Similarity=0.083  Sum_probs=77.6

Q ss_pred             HHHHHHHHHhcCChHHHHHHHHc--CcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHHHhcC------cHHHHH
Q 015951          188 ISAWILGKASQNNPLVQKQVLEL--GALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEA------GDLMLQ  259 (397)
Q Consensus       188 ~Aa~vLg~~aqNNp~~Q~~vl~~--g~lp~Ll~LL~s~~~~v~~kAl~ALS~LiR~~~~~~~~f~~~g------Gi~~L~  259 (397)
                      .|...|-.++. .-+.--++.+.  ..+..|+ +..+.++.++.+|...|++.+||||++...+.+.-      -++-|.
T Consensus        47 ~aLD~L~ElSH-Di~~G~KI~~~ef~lL~nL~-~~~~~~~~~rE~aarII~ssLRNNP~Al~~V~~~~p~fv~~lf~~L~  124 (315)
T 3qml_C           47 DSFDRIMEFAH-DYKHGYKIITHEFALLANLS-LNENLPLTLRELSTRVITSCLRNNPPVVEFINESFPNFKSKIMAALS  124 (315)
T ss_dssp             HHHHHHGGGTT-SHHHHHHHHHHHHHHHHHHH-HCTTSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHCTTHHHHHHHHHH
T ss_pred             HHHHHHHHhhh-hHHhhhHHHhCcHHHHHHHH-hhccCChhHHHHHHHHHHHHHccCHHHHHHHHHhChhHHHHHHHHHH
Confidence            34444444443 23344444432  2333343 33445567899999999999999999988765421      112233


Q ss_pred             HhhcCC--CccHHHHHHHHHHHHHHhhchhccCCCCcchhHHhCCcHHHHHHhccCC--ChHHHHHHHHHHHHHh
Q 015951          260 DILGNS--SFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASA--DLDLQEKALAAIKNLL  330 (397)
Q Consensus       260 ~lL~s~--~~d~klr~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~--d~dv~E~aL~aL~~L~  330 (397)
                      .++..+  +.+ .++.+-+.+|.-|+.      ++.   .|. ...+..|.+++...  ++.++.+++..+..+-
T Consensus       125 ~~~~~~~~~~~-~l~KR~LsII~~L~~------~~~---~F~-~~~m~~L~~ly~~~~~d~~~k~Kvl~li~d~f  188 (315)
T 3qml_C          125 NLNDSNHRSSN-ILIKRYLSILNELPV------TSE---DLP-IYSTVVLQNVYERNNKDKQLQIKVLELISKIL  188 (315)
T ss_dssp             HHHCC--CCCH-HHHHHHHHHHHHSCC------CST---TC---CCHHHHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred             HHhhcccchhH-HHHHHHHHHHHHHhc------ChH---hhh-hccHHHHHHHHccCCCCHHHHHHHHHHHHHHc
Confidence            333321  223 467777888888875      221   122 33457777776666  9999999999888766

>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*

Probab=85.64  E-value=2.3  Score=38.97  Aligned_cols=68  Identities=15%  Similarity=0.215  Sum_probs=53.1

Q ss_pred             HHHHhcCCCCHHHHHHHHHHHHHHhcCCh-HHHHHHHHcCcHHHHHHhhcCC-CHHHHHHHHHHHHHHhc
Q 015951          173 VLVGQLNHPDTDIRKISAWILGKASQNNP-LVQKQVLELGALSKLMKMVKSS-FVEEAVKALYTVSSLIR  240 (397)
Q Consensus       173 ~Li~lL~s~~~~ir~~Aa~vLg~~aqNNp-~~Q~~vl~~g~lp~Ll~LL~s~-~~~v~~kAl~ALS~LiR  240 (397)
                      .|..-|++.++.++..|..+|-++++|.. ..+..|.....+..|+++++.. +..|+.|++..|-.-..
T Consensus        49 al~krl~~~n~~v~l~aL~LLe~~vkNcG~~f~~eias~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~  118 (226)
T 3zyq_A           49 SIKKKVNDKNPHVALYALEVMESVVKNCGQTVHDEVANKQTMEELKDLLKRQVEVNVRNKILYLIQAWAH  118 (226)
T ss_dssp             HHHHHHTCSSHHHHHHHHHHHHHHHHHHCHHHHHHHSSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHHHHHhcchHHHHhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Confidence            34556788999999999999999999954 4777777777888888888653 46788888877776543

>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*

Probab=85.54  E-value=4.4  Score=34.78  Aligned_cols=70  Identities=16%  Similarity=0.096  Sum_probs=55.4

Q ss_pred             HHHHhcCCCCHHHHHHHHHHHHHHhcCCh-HHHHHHHHcCcHHHHHHhhcC------CCHHHHHHHHHHHHHHhcCC
Q 015951          173 VLVGQLNHPDTDIRKISAWILGKASQNNP-LVQKQVLELGALSKLMKMVKS------SFVEEAVKALYTVSSLIRNN  242 (397)
Q Consensus       173 ~Li~lL~s~~~~ir~~Aa~vLg~~aqNNp-~~Q~~vl~~g~lp~Ll~LL~s------~~~~v~~kAl~ALS~LiR~~  242 (397)
                      .|..-|++.++.++..|..+|-++++|.. .++..|.....+..|++++..      .+..|+.|.+..|-+-...+
T Consensus        52 al~krl~~~n~~v~l~AL~LLe~cvkNCG~~fh~eias~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~f  128 (149)
T 3g2s_A           52 LLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWTVGL  128 (149)
T ss_dssp             HHHHHHTCSSHHHHHHHHHHHHHHHHHCCHHHHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHHcccccCCCCCHHHHHHHHHHHHHHHHHh
Confidence            34455678899999999999999999964 567778788889999999974      45788988888777655444

>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2

Probab=85.53  E-value=3.1  Score=35.92  Aligned_cols=66  Identities=11%  Similarity=0.037  Sum_probs=52.0

Q ss_pred             HHHHhcC-CCCHHHHHHHHHHHHHHhcCC-hHHHHHHHHcCcHHH-HHHhhcC---CCHHHHHHHHHHHHHH
Q 015951          173 VLVGQLN-HPDTDIRKISAWILGKASQNN-PLVQKQVLELGALSK-LMKMVKS---SFVEEAVKALYTVSSL  238 (397)
Q Consensus       173 ~Li~lL~-s~~~~ir~~Aa~vLg~~aqNN-p~~Q~~vl~~g~lp~-Ll~LL~s---~~~~v~~kAl~ALS~L  238 (397)
                      .|..-|+ +.++.++..|..+|-++++|. +..+..+.....+.. |++++..   .+..|+.|++..|-.-
T Consensus        57 al~krl~~~~n~~v~l~AL~LLd~~vkNcG~~fh~eva~~~fl~e~Lvk~~~~k~~~~~~Vk~kil~li~~W  128 (157)
T 1elk_A           57 AVKKRIVGNKNFHEVMLALTVLETCVKNCGHRFHVLVASQDFVESVLVRTILPKNNPPTIVHDKVLNLIQSW  128 (157)
T ss_dssp             HHHHHHTTCCCHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHTHHHHSTTTCCCHHHHHHHHHHHHHH
T ss_pred             HHHHHhccCCCHHHHHHHHHHHHHHHHHhCHHHHHHHhhHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHH
Confidence            3445565 478999999999999999996 888888888889998 8898853   2357888887766654

>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5

Probab=85.51  E-value=0.34  Score=45.20  Aligned_cols=21  Identities=19%  Similarity=0.102  Sum_probs=16.1

Q ss_pred             HHHHHhcCCCCHHHHHHHHHH
Q 015951          172 SVLVGQLNHPDTDIRKISAWI  192 (397)
Q Consensus       172 ~~Li~lL~s~~~~ir~~Aa~v  192 (397)
                      +.|..+++.+++.||..++.-
T Consensus       101 ~~L~~ll~D~d~~VR~~aA~~  121 (244)
T 1lrv_A          101 EQLSALMFDEDREVRITVADR  121 (244)
T ss_dssp             GGGGGTTTCSCHHHHHHHHHH
T ss_pred             HHHHHHHcCCCHHHHHHHHHh
Confidence            356677888888888888874

>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1

Probab=84.10  E-value=5.2  Score=36.25  Aligned_cols=67  Identities=16%  Similarity=0.182  Sum_probs=52.6

Q ss_pred             HHHHhcCCCCHHHHHHHHHHHHHHhcCC-hHHHHHHHHcCcHHHHHHhhcCC-CHHHHHHHHHHHHHHh
Q 015951          173 VLVGQLNHPDTDIRKISAWILGKASQNN-PLVQKQVLELGALSKLMKMVKSS-FVEEAVKALYTVSSLI  239 (397)
Q Consensus       173 ~Li~lL~s~~~~ir~~Aa~vLg~~aqNN-p~~Q~~vl~~g~lp~Ll~LL~s~-~~~v~~kAl~ALS~Li  239 (397)
                      .|..-|++.++.++..|..+|-++++|. +..+..|.....+..|++++.+. +..|+.+++.-+-.-.
T Consensus        46 ~l~krl~~~n~~~~l~aL~Lle~~vkNcG~~f~~eva~~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~  114 (220)
T 1dvp_A           46 AIKKKMNSPNPHSSCYSLLVLESIVKNCGAPVHEEVFTKENCEMFSSFLESTPHENVRQKMLELVQTWA  114 (220)
T ss_dssp             HHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHSSHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHHHHhccCHHHHHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH
Confidence            3445678899999999999999999996 55778877777888899988754 4678888776665543

>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}

Probab=83.81  E-value=4.7  Score=37.94  Aligned_cols=101  Identities=14%  Similarity=0.122  Sum_probs=79.5

Q ss_pred             CHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHH
Q 015951          170 GLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMF  249 (397)
Q Consensus       170 Gl~~Li~lL~s~~~~ir~~Aa~vLg~~aqNNp~~Q~~vl~~g~lp~Ll~LL~s~~~~v~~kAl~ALS~LiR~~~~~~~~f  249 (397)
                      -+|.|+.=|..+.+.+|..+-.++..+++-.|       -...++.++.-+.+.+.-+|..++..+++++..+...    
T Consensus       133 ~lP~LveKlGd~k~~vR~~~r~il~~l~~v~~-------~~~v~~~l~~g~ksKN~R~R~e~l~~l~~li~~~G~~----  201 (266)
T 2of3_A          133 FVPYLLLKTGEAKDNMRTSVRDIVNVLSDVVG-------PLKMTPMLLDALKSKNARQRSECLLVIEYYITNAGIS----  201 (266)
T ss_dssp             HHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHC-------HHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHCSG----
T ss_pred             HHHHHHHHhCCChHHHHHHHHHHHHHHHHHCC-------HHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCCC----
Confidence            46888888888889999999999988875322       1235677888888888888999999999998776543    


Q ss_pred             HhcCcH---HHHHHhhcCCCccHHHHHHHHHHHHHHhh
Q 015951          250 YVEAGD---LMLQDILGNSSFEIRLHRKAVSLVGDLAK  284 (397)
Q Consensus       250 ~~~gGi---~~L~~lL~s~~~d~klr~kA~~lL~~L~~  284 (397)
                       ...++   +.+..++.++  |..+|.-|..++..+..
T Consensus       202 -~~~~l~~~~~ia~ll~D~--d~~VR~aAl~~lve~y~  236 (266)
T 2of3_A          202 -PLKSLSVEKTVAPFVGDK--DVNVRNAAINVLVACFK  236 (266)
T ss_dssp             -GGGGGCHHHHHGGGGGCS--SHHHHHHHHHHHHHHHH
T ss_pred             -ccccccchHHHHHHHcCC--CHHHHHHHHHHHHHHHH
Confidence             13478   9999999986  66789999999887765

>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}

Probab=83.19  E-value=15  Score=35.06  Aligned_cols=148  Identities=13%  Similarity=0.010  Sum_probs=87.3

Q ss_pred             HHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhccCCCCchhHHHhc--CCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCh
Q 015951          124 DAQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKL--GGLSVLVGQLNHPDTDIRKISAWILGKASQNNP  201 (397)
Q Consensus       124 d~~lmk~~i~~L~~~~~s~e~k~~AL~~L~~Lve~iDnA~~~~~l--GGl~~Li~lL~s~~~~ir~~Aa~vLg~~aqNNp  201 (397)
                      ...++..++..+.+ ...+....-++..+.++........-+...  ..++.+..++.+++..+|..++.++-|.+--+-
T Consensus       145 ~~~l~~~l~~~~~~-~~~p~n~ml~lR~l~NlF~~~~g~~~l~~~~~~il~~~~~~~~~~nknl~iA~ATl~~NlAv~~~  223 (304)
T 3ebb_A          145 GAQFSSHLINLLNP-KGKPANQLLALRTFCNCFVGQAGQKLMMSQRESLMSHAIELKSGSNKNIHIALATLALNYSVCFH  223 (304)
T ss_dssp             HHHHHHHHHHTTCT-TSCHHHHHHHHHHHHHGGGSHHHHHHHHHTHHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHhcCC-CCChHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHh
Confidence            34555555565544 335667888899999888766544444432  123334445566899999999999988874211


Q ss_pred             H--HHHHHHHcCcHHHHHHhhcC-CCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHH
Q 015951          202 L--VQKQVLELGALSKLMKMVKS-SFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKA  275 (397)
Q Consensus       202 ~--~Q~~vl~~g~lp~Ll~LL~s-~~~~v~~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klr~kA  275 (397)
                      +  ..+..  ...+..+.+++.. .+.+..-+++-||++++...+...+.....|....+..+...+ .+.|+..-+
T Consensus       224 ~~~~~~~~--~~ll~~l~~il~~~~d~EalyR~LvALGtL~~~~~~~~~lak~l~~~~~v~~~~~~~-~~~kv~~~~  297 (304)
T 3ebb_A          224 KDHNIEGK--AQCLSLISTILEVVQDLEATFRLLVALGTLISDDSNAVQLAKSLGVDSQIKKYSSVS-EPAKVSECC  297 (304)
T ss_dssp             HSCCHHHH--HHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHGGGGGGCC-SSHHHHHHH
T ss_pred             hcCCchHH--HHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhCChhHHHHHHHcCHHHHHHHHHhCC-CchhHHHHH
Confidence            0  00111  1145555566654 3567888999999999987554333333344444455555443 356655443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	397
d1xqra1	264	a.118.1.21 (A:87-350) Hsp70-binding protein 1 (Hsp	6e-18
d1xm9a1	457	a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo	2e-06
d1jdha_	529	a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens)	5e-06

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 264

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HspBP1 domain
domain: Hsp70-binding protein 1 (HspBP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 80.9 bits (198), Expect = 6e-18
 Identities = 62/263 (23%), Positives = 114/263 (43%), Gaps = 13/263 (4%)

Query: 111 EIKELMEKLKTPSDAQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGG 170
           E++++   L+  S          +        ++ + AL+ L  L E +DNA D  +L G
Sbjct: 3   EVEQMKSCLRVLSQPMPPTAGEAE---QAADQQEREGALELLADLCENMDNAADFCQLSG 59

Query: 171 LSVLVGQ-LNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKS-SFVEEA 228
           + +LVG+ L      +R  +A ++G  SQN   +Q+QVL LGAL KL++++   +     
Sbjct: 60  MHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVR 119

Query: 229 VKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLE 288
           VKAL+ +S L+R   AG   F    G  +L   +     ++    K+  L+ +L     E
Sbjct: 120 VKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKL--KVKSAFLLQNLLVGHPE 177

Query: 289 NMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQL-RTTEALVLKDFCGLD 347
           +              ++ +V L  +      E  L A+ +L+           +   GL+
Sbjct: 178 HKGT-----LCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTDFPQGVRECREPELGLE 232

Query: 348 TALERLRQQLQEVMLEEDQRDYA 370
             L    Q LQ+    +++ ++ 
Sbjct: 233 ELLRHRCQLLQQHEEYQEELEFC 255

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.1 bits (110), Expect = 2e-06
 Identities = 15/107 (14%), Positives = 43/107 (40%)

Query: 160 DNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKM 219
                + +LGG+  LV  L  P+ ++++ +A  L      +   + +      + + + +
Sbjct: 35  SAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLETRRQNGIREAVSL 94

Query: 220 VKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSS 266
           ++ +   E  K L  +   + +    +E    +A  ++   ++   S
Sbjct: 95  LRRTGNAEIQKQLTGLLWNLSSTDELKEELIADALPVLADRVIIPFS 141

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.0 bits (107), Expect = 5e-06
 Identities = 23/132 (17%), Positives = 51/132 (38%), Gaps = 8/132 (6%)

Query: 112 IKELMEKLKTPSDAQLIQIAIDDLNNSTL----SLEDSQRALQELLILVEPIDNANDLSK 167
           I  L++ L         + ++       +      E  +     L IL   + N   +  
Sbjct: 399 IPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRG 458

Query: 168 LGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSS---F 224
           L  + + V  L  P  +I++++A +L + +Q +    + +   GA + L +++ S     
Sbjct: 459 LNTIPLFVQLLYSPIENIQRVAAGVLCELAQ-DKEAAEAIEAEGATAPLTELLHSRNEGV 517

Query: 225 VEEAVKALYTVS 236
              A   L+ +S
Sbjct: 518 ATYAAAVLFRMS 529

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	397
d1xqra1	264	Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi	100.0
d1jdha_	529	beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}	99.78
d1q1sc_	434	Importin alpha {Mouse (Mus musculus) [TaxId: 10090	99.76
d1q1sc_	434	Importin alpha {Mouse (Mus musculus) [TaxId: 10090	99.75
d1wa5b_	503	Karyopherin alpha {Baker's yeast (Saccharomyces ce	99.74
d1wa5b_	503	Karyopherin alpha {Baker's yeast (Saccharomyces ce	99.73
d1xm9a1	457	Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}	99.73
d1jdha_	529	beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}	99.68
d1xm9a1	457	Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}	99.65
d1xqra1	264	Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi	99.62
d1b3ua_	588	Constant regulatory domain of protein phosphatase	98.21
d2vglb_	579	Adaptin beta subunit N-terminal fragment {Human (H	98.09
d1te4a_	111	MTH187 {Archaeon Methanobacterium thermoautotrophi	98.09
d2vglb_	579	Adaptin beta subunit N-terminal fragment {Human (H	98.07
d1b3ua_	588	Constant regulatory domain of protein phosphatase	97.93
d1te4a_	111	MTH187 {Archaeon Methanobacterium thermoautotrophi	97.92
d1qbkb_	888	Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96	97.91
d1oyza_	276	Hypothetical protein YibA {Escherichia coli [TaxId	97.86
d1ibrb_	458	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	97.76
d2bpta1	861	Importin beta {Baker's yeast (Saccharomyces cerevi	97.7
d1oyza_	276	Hypothetical protein YibA {Escherichia coli [TaxId	97.68
d1u6gc_	1207	Cullin-associated NEDD8-dissociated protein 1 (Tip	97.62
d1qbkb_	888	Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96	97.33
d2vgla_	584	Adaptin alpha C subunit N-terminal fragment {Mouse	97.28
d1ibrb_	458	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	97.28
d1u6gc_	1207	Cullin-associated NEDD8-dissociated protein 1 (Tip	97.25
d1qgra_	876	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	97.08
d2vgla_	584	Adaptin alpha C subunit N-terminal fragment {Mouse	96.77
d1ho8a_	477	Regulatory subunit H of the V-type ATPase {Baker's	96.44
d2bpta1	861	Importin beta {Baker's yeast (Saccharomyces cerevi	96.42
d1qgra_	876	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	95.75
d1lsha1	336	Lipovitellin-phosvitin complex, superhelical domai	95.59
d1ho8a_	477	Regulatory subunit H of the V-type ATPase {Baker's	95.47
d1lrva_	233	Leucine-rich repeat variant {Azotobacter vinelandi	95.28
d2bnxa1	343	Diaphanous protein homolog 1, Diap1 (Dia1, DRF1) {	95.08
d1upka_	330	Mo25 protein {Human (Homo sapiens) [TaxId: 9606]}	94.99
d2bnxa1	343	Diaphanous protein homolog 1, Diap1 (Dia1, DRF1) {	93.76
d1mhqa_	143	ADP-ribosylation factor binding protein Gga2 {Huma	93.15
d1dvpa1	145	Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7	92.95
d1lrva_	233	Leucine-rich repeat variant {Azotobacter vinelandi	92.63
d1ujka_	145	ADP-ribosylation factor binding protein Gga1 {Huma	92.3
d1wa5c_	959	Exportin Cse1p {Baker's yeast (Saccharomyces cerev	89.3
d1juqa_	151	ADP-ribosylation factor binding protein Gga3 {Huma	86.83
d1upka_	330	Mo25 protein {Human (Homo sapiens) [TaxId: 9606]}	85.92
d1mhqa_	143	ADP-ribosylation factor binding protein Gga2 {Huma	84.15
d1ujka_	145	ADP-ribosylation factor binding protein Gga1 {Huma	82.57
d1dvpa1	145	Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7	80.11

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HspBP1 domain
domain: Hsp70-binding protein 1 (HspBP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.4e-32  Score=258.50  Aligned_cols=244  Identities=25%  Similarity=0.326  Sum_probs=211.1

Q ss_pred             CHHHHHHHHHHHhhCCC----------CCHHHHHHHHHHHHhccCCCCchhHHHhcCCHHHHHH-hcCCCCHHHHHHHHH
Q 015951          123 SDAQLIQIAIDDLNNST----------LSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVG-QLNHPDTDIRKISAW  191 (397)
Q Consensus       123 ~d~~lmk~~i~~L~~~~----------~s~e~k~~AL~~L~~Lve~iDnA~~~~~lGGl~~Li~-lL~s~~~~ir~~Aa~  191 (397)
                      +|++.||+++.++.++.          .+.+.+..|++.|.+|++++|||++|+++||+++++. +|+++++++|..|++
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~L~~L~~~~d~a~~l~~~gg~~~ll~~ll~s~~~~vr~~A~~   81 (264)
T d1xqra1           2 GEVEQMKSCLRVLSQPMPPTAGEAEQAADQQEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQ   81 (264)
T ss_dssp             HHHHHHHHHHHHHHSCCCSSCCHHHHHHHHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHH
T ss_pred             cHHHHHHHHHHHhhccCcchHHHhhcCCCHHHHHHHHHHHHHHHcCHHHHHHHHHcCCHHHHHHHHhCCCCHHHHHHHHH
Confidence            47888999999998883          3567889999999999999999999999999999985 789999999999999


Q ss_pred             HHHHHhcCChHHHHHHHHcCcHHHHHHhhcC-CCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHH
Q 015951          192 ILGKASQNNPLVQKQVLELGALSKLMKMVKS-SFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIR  270 (397)
Q Consensus       192 vLg~~aqNNp~~Q~~vl~~g~lp~Ll~LL~s-~~~~v~~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~k  270 (397)
                      +|+++++|||.+|..+.+.|++|.|++++.+ .++.++.+|++||+++++++++++..|+..||++.|++++.++  +.+
T Consensus        82 ~L~~l~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~gi~~L~~lL~~~--~~~  159 (264)
T d1xqra1          82 LIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQ--VQK  159 (264)
T ss_dssp             HHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSS--CHH
T ss_pred             HHHHHHHHHHHHHHHHHHcCchHHHHHHhhcCCCHHHHHHHHHHHHHHhccchhhHHHHHHhhhhhHHHHHHhcC--chH
Confidence            9999999999999999999999999999975 4578999999999999999999999999999999999999987  667


Q ss_pred             HHHHHHHHHHHHhhchhccCCCCcchhHHhCCcHHHHHHhccCCChHHHHHHHHHHHHHhcCChHHHHHHHhc-CChHHH
Q 015951          271 LHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLRTTEALVLKDF-CGLDTA  349 (397)
Q Consensus       271 lr~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~dv~E~aL~aL~~L~~~~~~~r~~~~~~-~gL~~~  349 (397)
                      ++.+++++|.+|+.+     +++.+..+.+.|+++.|+.+|++++++++++|+.+|.+|+...+..+..+... -++...
T Consensus       160 ~~~~a~~~L~~l~~~-----~~~~~~~~~~~~~v~~L~~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~~~l~~~~~  234 (264)
T d1xqra1         160 LKVKSAFLLQNLLVG-----HPEHKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTDFPQGVRECREPELGLEEL  234 (264)
T ss_dssp             HHHHHHHHHHHHHHH-----CGGGHHHHHHTTHHHHHHHHHTSCCSTHHHHHHHHHHHHHTTCHHHHHHHHCGGGCHHHH
T ss_pred             HHHHHHHHHHHHHhc-----cHHHHHHHHHhhhHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHhhhhHHHH
Confidence            999999999999863     67888899999999999999999999999999999999999887666665522 234556


Q ss_pred             HHHHHHHhHHhhhhhhhhhhHHhH
Q 015951          350 LERLRQQLQEVMLEEDQRDYAMDV  373 (397)
Q Consensus       350 L~~Lr~~~~~l~~~e~~~~~~~~l  373 (397)
                      +..+.+.+.......+..+|+..+
T Consensus       235 L~~~~~~~~~~~~~~e~~~~~~~l  258 (264)
T d1xqra1         235 LRHRCQLLQQHEEYQEELEFCEKL  258 (264)
T ss_dssp             HHHHHHHHTTCGGGHHHHHHHHHH
T ss_pred             HHHHHHhccchHHHHHHHHHHHHH
Confidence            665555544444445556666655

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.78  E-value=8.3e-18  Score=169.45  Aligned_cols=223  Identities=16%  Similarity=0.208  Sum_probs=188.9

Q ss_pred             HHHHHHHHHHhhCCCCCHHHHHHHHHHHHhccCCCCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHHH
Q 015951          125 AQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQ  204 (397)
Q Consensus       125 ~~lmk~~i~~L~~~~~s~e~k~~AL~~L~~Lve~iDnA~~~~~lGGl~~Li~lL~s~~~~ir~~Aa~vLg~~aqNNp~~Q  204 (397)
                      ...+..++..|.+.+ +++.+..|...|..++++.++...+.+.||+++|+.+|++++++++..|+++|++++.+++..|
T Consensus        58 ~~~v~~l~~~L~~~~-~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~Li~lL~~~~~~v~~~a~~aL~~l~~~~~~~~  136 (529)
T d1jdha_          58 PQMVSAIVRTMQNTN-DVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAK  136 (529)
T ss_dssp             HHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHH
T ss_pred             hhHHHHHHHHHcCCC-CHHHHHHHHHHHHHHhCCchhHHHHHHCCCHHHHHHHhCCCCHHHHHHHHHHHHHhhcccchhh
Confidence            355677777787654 5678889999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhh
Q 015951          205 KQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAK  284 (397)
Q Consensus       205 ~~vl~~g~lp~Ll~LL~s~~~~v~~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klr~kA~~lL~~L~~  284 (397)
                      ..+.+.|++|.|+.++++++.+++..++++|+++..+++..+..+...||++.|+.++..+. ...++..++.++.+++.
T Consensus       137 ~~~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~-~~~~~~~~~~~l~~ls~  215 (529)
T d1jdha_         137 MAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYT-YEKLLWTTSRVLKVLSV  215 (529)
T ss_dssp             HHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCC-CHHHHHHHHHHHHHHTT
T ss_pred             hHHHhcCCchHHHHHHHccChHHHHHHHHHHHHHhhhhhHHHHHHHhcccchHHHHHHHhhh-hHHHHHHHHHHHhhhhc
Confidence            99999999999999999999999999999999999998888999999999999999998653 45688899999999874


Q ss_pred             chhccCCCCcchhHHh---------------------------------------CCcHHHHHHhccCCChHHHHHHHHH
Q 015951          285 CQLENMHKVEPPLFRD---------------------------------------RFFLKSVVDLTASADLDLQEKALAA  325 (397)
Q Consensus       285 ~~l~~~~~~~~~~l~~---------------------------------------~g~v~~Lv~lL~~~d~dv~E~aL~a  325 (397)
                      .      ++.+..+.+                                       .|+++.|+.++.++|..+++.++.+
T Consensus       216 ~------~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~l~~ls~~~~~~~~~~~~i~~Lv~ll~~~~~~~~~~a~~~  289 (529)
T d1jdha_         216 C------SSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGI  289 (529)
T ss_dssp             S------TTHHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHHHTTCTTCSCCHHHHHHHHHHTTCSCHHHHHHHHHH
T ss_pred             c------ccccchhhhhhhhhhHHHHhcccchhhhhhhhhHHHhccccccchhhhhhcchhhhhhcccccHHHHHHHHHH
Confidence            2      222222222                                       3667777777888888999999999


Q ss_pred             HHHHhcCChHHHHHHHhcCChHHHHHHHHH
Q 015951          326 IKNLLQLRTTEALVLKDFCGLDTALERLRQ  355 (397)
Q Consensus       326 L~~L~~~~~~~r~~~~~~~gL~~~L~~Lr~  355 (397)
                      |.+|+..++..+..+.+.+|+..++..+..
T Consensus       290 L~~l~~~~~~~~~~i~~~~~i~~Li~~l~~  319 (529)
T d1jdha_         290 LSNLTCNNYKNKMMVCQVGGIEALVRTVLR  319 (529)
T ss_dssp             HHHHTTTCHHHHHHHHHTTHHHHHHHHHHH
T ss_pred             HHhhccchhHHHHHHHHhhhHHHHHHHHHh
Confidence            999998877777777777888887776653

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.76  E-value=5.8e-17  Score=157.55  Aligned_cols=221  Identities=16%  Similarity=0.194  Sum_probs=182.7

Q ss_pred             HHHHHHHhhCCCCCHHHHHHHHHHHHhccCCCCc--hhHHHhcCCHHHHHHhcCC-CCHHHHHHHHHHHHHHhcCChHHH
Q 015951          128 IQIAIDDLNNSTLSLEDSQRALQELLILVEPIDN--ANDLSKLGGLSVLVGQLNH-PDTDIRKISAWILGKASQNNPLVQ  204 (397)
Q Consensus       128 mk~~i~~L~~~~~s~e~k~~AL~~L~~Lve~iDn--A~~~~~lGGl~~Li~lL~s-~~~~ir~~Aa~vLg~~aqNNp~~Q  204 (397)
                      ++++++.+.++  +++.+..|+..+..++..-+|  ...+.+.|++|+|+++|++ +++++|..|+++|++++..++...
T Consensus        15 i~~lv~~l~s~--~~~~~~~a~~~l~~l~s~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~la~~~~~~~   92 (434)
T d1q1sc_          15 VEDIVKGINSN--NLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQT   92 (434)
T ss_dssp             HHHHHHHHTSS--CHHHHHHHHHHHHHHHHSSSCCCHHHHHHTTCHHHHHHHTTCGGGHHHHHHHHHHHHHHHTSCHHHH
T ss_pred             HHHHHHHHcCC--CHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHccCCCHHHHHHHHHHHHHHhcCChhhh
Confidence            56667777665  678899999999887754444  4678999999999999965 578999999999999999999999


Q ss_pred             HHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCc---cHHHHHHHHHHHHH
Q 015951          205 KQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSF---EIRLHRKAVSLVGD  281 (397)
Q Consensus       205 ~~vl~~g~lp~Ll~LL~s~~~~v~~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~---d~klr~kA~~lL~~  281 (397)
                      ..+++.|++|.|++++.+++.+++..|+++|++++.+++..+..+.+.||+..|+.++..+..   .....+.+++++++
T Consensus        93 ~~i~~~~~i~~l~~~L~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~  172 (434)
T d1q1sc_          93 KAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSN  172 (434)
T ss_dssp             HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHH
T ss_pred             hHhhhccchhhhhhccccCCHHHHHHHHHHHHHHhccchHHHHHHHHhhhhhHHHHHHHhcccccchHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999888999999999999999986532   23466778899999


Q ss_pred             HhhchhccCCCCcchhHHhCCcHHHHHHhccCCChHHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHHHH
Q 015951          282 LAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLRTTEALVLKDFCGLDTALERLRQ  355 (397)
Q Consensus       282 L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~dv~E~aL~aL~~L~~~~~~~r~~~~~~~gL~~~L~~Lr~  355 (397)
                      ++..     .+.........++++.++.++.++|+++++.++.+|.+|+.........+...++++.++..++.
T Consensus       173 ~~~~-----~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~Lv~ll~~  241 (434)
T d1q1sc_         173 LCRN-----KNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGA  241 (434)
T ss_dssp             HTCC-----CTTCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTC
T ss_pred             Hhhc-----ccccchhhhhhhHHHHHHHHHhccccchhhhHHhhhcccchhhhhhHHHHhhcccchhccccccc
Confidence            9862     33344444567889999999999999999999999999998877666666645566666665543

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.75  E-value=8.1e-17  Score=156.50  Aligned_cols=206  Identities=15%  Similarity=0.183  Sum_probs=176.8

Q ss_pred             CHHHHHHHHHHHHhccCCCCc-hhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCcHHHHHHh
Q 015951          141 SLEDSQRALQELLILVEPIDN-ANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKM  219 (397)
Q Consensus       141 s~e~k~~AL~~L~~Lve~iDn-A~~~~~lGGl~~Li~lL~s~~~~ir~~Aa~vLg~~aqNNp~~Q~~vl~~g~lp~Ll~L  219 (397)
                      +++.+..++..|.+++...+. ...+...|+++.++.++.++++.++..|+++|++++.+++.....+++.|+++.|+.+
T Consensus       201 ~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~Lv~ll~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~~~~~~l~~l  280 (434)
T d1q1sc_         201 DPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSL  280 (434)
T ss_dssp             CHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHH
T ss_pred             ccchhhhHHhhhcccchhhhhhHHHHhhcccchhcccccccchhhhhhchhhhhhhHHhhhhHHHHHHHhccccchHHHh
Confidence            567888899999998876544 3456778999999999999999999999999999999999999999999999999999


Q ss_pred             hcCCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHH
Q 015951          220 VKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFR  299 (397)
Q Consensus       220 L~s~~~~v~~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klr~kA~~lL~~L~~~~l~~~~~~~~~~l~  299 (397)
                      +++++++++..|+++|++++++++.....+.+.|+++.++.++.++  +.+++..|++++.+++..    .+++....+.
T Consensus       281 l~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~li~~l~~~--~~~v~~~a~~~l~nl~~~----~~~~~~~~l~  354 (434)
T d1q1sc_         281 LTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKA--DFKTQKEAAWAITNYTSG----GTVEQIVYLV  354 (434)
T ss_dssp             TTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHSS--CHHHHHHHHHHHHHHHHH----SCHHHHHHHH
T ss_pred             hcccchhhhHHHHHHHhhhccccchhHHHHhhhhhHHHHHHHHhcc--ChHHHHHHHHHHHHHHhc----CCHHHHHHHH
Confidence            9999999999999999999999988889999999999999999986  667999999999999863    3445667788


Q ss_pred             hCCcHHHHHHhccCCChHHHHHHHHHHHHHhcCC------hHHHHHHHhcCChHHHHHHH
Q 015951          300 DRFFLKSVVDLTASADLDLQEKALAAIKNLLQLR------TTEALVLKDFCGLDTALERL  353 (397)
Q Consensus       300 ~~g~v~~Lv~lL~~~d~dv~E~aL~aL~~L~~~~------~~~r~~~~~~~gL~~~L~~L  353 (397)
                      +.|+++.|++++...|++++..++.+|.+|....      +..+..+.+.+|++ .|+.|
T Consensus       355 ~~~~i~~L~~ll~~~d~~~~~~~l~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~-~i~~L  413 (434)
T d1q1sc_         355 HCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLD-KIEAL  413 (434)
T ss_dssp             HTTCHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTSHH-HHHHH
T ss_pred             HCCcHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHcCCHH-HHHHH
Confidence            9999999999999999999999999999987531      12344566555554 44544

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin alpha
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.74  E-value=3e-16  Score=157.11  Aligned_cols=218  Identities=15%  Similarity=0.145  Sum_probs=182.2

Q ss_pred             HHHHHHHhhCCCCCHHHHHHHHHHHHhccCCC--CchhHHHhcCCHHHHHHhcCC-CCHHHHHHHHHHHHHHhcCChHHH
Q 015951          128 IQIAIDDLNNSTLSLEDSQRALQELLILVEPI--DNANDLSKLGGLSVLVGQLNH-PDTDIRKISAWILGKASQNNPLVQ  204 (397)
Q Consensus       128 mk~~i~~L~~~~~s~e~k~~AL~~L~~Lve~i--DnA~~~~~lGGl~~Li~lL~s-~~~~ir~~Aa~vLg~~aqNNp~~Q  204 (397)
                      +.+.+..+.+.  +.+.+..|+..+..++...  ...+.+.+.|++|.|+.+|.+ .++.++..|+|+|++++..++...
T Consensus        78 l~~~~~~~~s~--~~~~~~~a~~~~r~~ls~~~~~~i~~ii~~g~i~~Lv~~l~~~~~~~iq~~a~~~L~ni~~~~~~~~  155 (503)
T d1wa5b_          78 LPQMTQQLNSD--DMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQT  155 (503)
T ss_dssp             HHHHHHHHSCS--SHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHH
T ss_pred             HHHHHHHhcCC--CHHHHHHHHHHHHHHHhcCCCchHHHHHHCCChHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHH
Confidence            34444445433  5677888999998877433  346789999999999999975 578899999999999999999999


Q ss_pred             HHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhh
Q 015951          205 KQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAK  284 (397)
Q Consensus       205 ~~vl~~g~lp~Ll~LL~s~~~~v~~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klr~kA~~lL~~L~~  284 (397)
                      ..+.+.|++|.|+.++.+++.+++..|+|+|++++.+++..+..+.+.||++.|+.++.+.  +..+++.++|++++|+.
T Consensus       156 ~~~~~~g~i~~l~~lL~s~~~~i~~~a~~~L~nia~~~~~~r~~l~~~~~~~~L~~ll~~~--~~~~~~~~~~~l~nl~~  233 (503)
T d1wa5b_         156 KVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSN--KPSLIRTATWTLSNLCR  233 (503)
T ss_dssp             HHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSC--CHHHHHHHHHHHHHHHC
T ss_pred             HHHHhCCChHHHHHHhcCCChhHHHHHHHHHHHHhhhhHHHHHHHHhhcccccchhhcccC--CHHHHHHHHHHHHHHhc
Confidence            9999999999999999999999999999999999999999999999999999999999976  55789999999999996


Q ss_pred             chhccCCCCcchhHHhCCcHHHHHHhccCCChHHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHHH
Q 015951          285 CQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLRTTEALVLKDFCGLDTALERLR  354 (397)
Q Consensus       285 ~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~dv~E~aL~aL~~L~~~~~~~r~~~~~~~gL~~~L~~Lr  354 (397)
                      +     .+.........++++.++.++.++|.+++..++.+|..|+.........+.+.+.+..++..++
T Consensus       234 ~-----~~~~~~~~~~~~~l~~l~~~l~~~d~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~  298 (503)
T d1wa5b_         234 G-----KKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLS  298 (503)
T ss_dssp             C-----SSSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGG
T ss_pred             C-----CccchHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhccCCchhhhhhhhhhhhhhhhhccc
Confidence            3     2333344456789999999999999999999999999999887766666665666666666554

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin alpha
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.73  E-value=7.9e-17  Score=161.41  Aligned_cols=216  Identities=14%  Similarity=0.120  Sum_probs=182.0

Q ss_pred             HHHHHHHhhCCCCCHHHHHHHHHHHHhccCCC-CchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHHHHH
Q 015951          128 IQIAIDDLNNSTLSLEDSQRALQELLILVEPI-DNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQ  206 (397)
Q Consensus       128 mk~~i~~L~~~~~s~e~k~~AL~~L~~Lve~i-DnA~~~~~lGGl~~Li~lL~s~~~~ir~~Aa~vLg~~aqNNp~~Q~~  206 (397)
                      +..++..+... .+.+-+..|+..|.+++... +....+...|+++.++.+|.+++++++..|+|+|++++..++.++..
T Consensus       121 i~~Lv~~l~~~-~~~~iq~~a~~~L~ni~~~~~~~~~~~~~~g~i~~l~~lL~s~~~~i~~~a~~~L~nia~~~~~~r~~  199 (503)
T d1wa5b_         121 VPRLVEFMREN-QPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDY  199 (503)
T ss_dssp             HHHHHHTTSTT-SCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             hHHHHHHHcCC-CCHHHHHHHHHHHHHHHcCCHHHHHHHHhCCChHHHHHHhcCCChhHHHHHHHHHHHHhhhhHHHHHH
Confidence            44566666543 35567788999999988654 45667888999999999999999999999999999999999999999


Q ss_pred             HHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhch
Q 015951          207 VLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQ  286 (397)
Q Consensus       207 vl~~g~lp~Ll~LL~s~~~~v~~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klr~kA~~lL~~L~~~~  286 (397)
                      +.+.|+++.|+.++.+....++..++|+|++++++.++........++++.|..++.++  +..++..+++++++|+.  
T Consensus       200 l~~~~~~~~L~~ll~~~~~~~~~~~~~~l~nl~~~~~~~~~~~~~~~~l~~l~~~l~~~--d~~~~~~~~~~l~~l~~--  275 (503)
T d1wa5b_         200 VLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSM--DTETLVDACWAISYLSD--  275 (503)
T ss_dssp             HHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCSSSCCCHHHHGGGHHHHHHHTTCC--CHHHHHHHHHHHHHHHS--
T ss_pred             HHhhcccccchhhcccCCHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHHHhccc--cHHHHHHHHHHHHhhcc--
Confidence            99999999999999999999999999999999998766666666789999999999986  56689999999999985  


Q ss_pred             hccCCCCcchhHHhCCcHHHHHHhccCCChHHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHH
Q 015951          287 LENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLRTTEALVLKDFCGLDTALE  351 (397)
Q Consensus       287 l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~dv~E~aL~aL~~L~~~~~~~r~~~~~~~gL~~~L~  351 (397)
                         .+++....+.+.|+++.++.++.+++..++..++.+|.+++...+.....+.+.+.++.+..
T Consensus       276 ---~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~l~nl~~~~~~~~~~~~~~~~l~~l~~  337 (503)
T d1wa5b_         276 ---GPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRL  337 (503)
T ss_dssp             ---SCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHH
T ss_pred             ---CCchhhhhhhhhhhhhhhhhcccCCchhhhhhHHHHHHHHHHHHHHHHHhhhccchHHHHHH
Confidence               24456677889999999999999999999999999999999987765555653444444443

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.73  E-value=6.6e-17  Score=153.94  Aligned_cols=182  Identities=14%  Similarity=0.177  Sum_probs=148.2

Q ss_pred             CHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHH
Q 015951          170 GLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMF  249 (397)
Q Consensus       170 Gl~~Li~lL~s~~~~ir~~Aa~vLg~~aqNNp~~Q~~vl~~g~lp~Ll~LL~s~~~~v~~kAl~ALS~LiR~~~~~~~~f  249 (397)
                      .+|.||++|+++++++|..|+++|+++|.+|+..|..+.+.|+||.|+++|++++++++..|++||.+++.+++.++..+
T Consensus         3 ~ip~lv~~L~~~~~~~~~~a~~~l~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~~~~i   82 (457)
T d1xm9a1           3 TIPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLET   82 (457)
T ss_dssp             CHHHHHHHHHSSCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHH
T ss_pred             CHHHHHHHhCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCcHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence            48999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHHhCCcHHHHHHh---------------ccCC
Q 015951          250 YVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDL---------------TASA  314 (397)
Q Consensus       250 ~~~gGi~~L~~lL~s~~~d~klr~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~l---------------L~~~  314 (397)
                      .+.||++.|+.++.+. .+..++..|++++.+++.      ++.....+...|+...+..+               ....
T Consensus        83 ~~~g~v~~li~~l~~~-~~~~~~~~a~~~l~~l~~------~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  155 (457)
T d1xm9a1          83 RRQNGIREAVSLLRRT-GNAEIQKQLTGLLWNLSS------TDELKEELIADALPVLADRVIIPFSGWCDGNSNMSREVV  155 (457)
T ss_dssp             HHTTCHHHHHHHHTTC-CCHHHHHHHHHHHHHHHT------SSSTHHHHHHHHHHHHHHHTTHHHHTCC---------CC
T ss_pred             HHCCChHHHHHHHhcc-CcHHHHHHHHHHHHHHHh------hhhhHHHHHhcccHHHHHHHHhhhhhhhcchhhhhcccc
Confidence            9999999999999865 356799999999999985      33444445554544333332               2345


Q ss_pred             ChHHHHHHHHHHHHHhcCChHHHHHHHhcCCh-HHHHHHHHHHhHH
Q 015951          315 DLDLQEKALAAIKNLLQLRTTEALVLKDFCGL-DTALERLRQQLQE  359 (397)
Q Consensus       315 d~dv~E~aL~aL~~L~~~~~~~r~~~~~~~gL-~~~L~~Lr~~~~~  359 (397)
                      +.++++.++.++..+....+ .+..+....|+ +.++..++.....
T Consensus       156 ~~~v~~~a~~~l~~~~~~~~-~~~~~~~~~~~i~~l~~ll~~~~~~  200 (457)
T d1xm9a1         156 DPEVFFNATGCLRNLSSADA-GRQTMRNYSGLIDSLMAYVQNCVAA  200 (457)
T ss_dssp             CHHHHHHHHHHHHHHTTSHH-HHHHHTTSTTHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHhcCch-HHHHHHHHhccHHHHHHHHhcchhh
Confidence            78999999999999998865 45555445564 5566656554433

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.68  E-value=4e-16  Score=156.97  Aligned_cols=215  Identities=13%  Similarity=0.090  Sum_probs=180.1

Q ss_pred             HHHHHHHhhCCCCCHHHHHHHHHHHHhccCCCCchhHHHhc-CCHHHHHHhcC-CCCHHHHHHHHHHHHHHhcCChHHHH
Q 015951          128 IQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKL-GGLSVLVGQLN-HPDTDIRKISAWILGKASQNNPLVQK  205 (397)
Q Consensus       128 mk~~i~~L~~~~~s~e~k~~AL~~L~~Lve~iDnA~~~~~l-GGl~~Li~lL~-s~~~~ir~~Aa~vLg~~aqNNp~~Q~  205 (397)
                      +..+++.|++.  +.+.+..|+..+..+...-.....+... |+++.|+.+|. +++++++..|+++|.+++. ++..+.
T Consensus        19 ip~L~~lL~~~--~~~v~~~A~~~l~~l~~~~~~~~~~~~~~~~v~~l~~~L~~~~~~~~~~~a~~~L~~l~~-~~~~~~   95 (529)
T d1jdha_          19 IPELTKLLNDE--DQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSH-HREGLL   95 (529)
T ss_dssp             HHHHHHHHTCS--CHHHHHHHHHHHHHHHTSHHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTT-SHHHHH
T ss_pred             HHHHHHHHcCC--CHHHHHHHHHHHHHHHhccHHHHHHHHhhhHHHHHHHHHcCCCCHHHHHHHHHHHHHHhC-CchhHH
Confidence            55667777654  5678888988888887655555566665 45889999995 4679999999999999996 677889


Q ss_pred             HHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhc
Q 015951          206 QVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKC  285 (397)
Q Consensus       206 ~vl~~g~lp~Ll~LL~s~~~~v~~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klr~kA~~lL~~L~~~  285 (397)
                      .+++.|++|.|+++|+++++.++..|+++|++++.+++..+..|.+.||++.|+.+|+++  +..++..+++++.+|+. 
T Consensus        96 ~i~~~g~i~~Li~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~--~~~~~~~a~~~L~~l~~-  172 (529)
T d1jdha_          96 AIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKT--NVKFLAITTDCLQILAY-  172 (529)
T ss_dssp             HHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCC--CHHHHHHHHHHHHHHHT-
T ss_pred             HHHHCCCHHHHHHHhCCCCHHHHHHHHHHHHHhhcccchhhhHHHhcCCchHHHHHHHcc--ChHHHHHHHHHHHHHhh-
Confidence            999999999999999999999999999999999999999999999999999999999987  56789999999999985 


Q ss_pred             hhccCCCCcchhHHhCCcHHHHHHhccCC-ChHHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHH
Q 015951          286 QLENMHKVEPPLFRDRFFLKSVVDLTASA-DLDLQEKALAAIKNLLQLRTTEALVLKDFCGLDTALERL  353 (397)
Q Consensus       286 ~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~-d~dv~E~aL~aL~~L~~~~~~~r~~~~~~~gL~~~L~~L  353 (397)
                          .++..+..+...|.++.++.++... +..+++.+..++.+++...+ .+..+.+.+++.+++..+
T Consensus       173 ----~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~l~~ls~~~~-~~~~~~~~g~~~~L~~ll  236 (529)
T d1jdha_         173 ----GNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSS-NKPAIVEAGGMQALGLHL  236 (529)
T ss_dssp             ----TCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSTT-HHHHHHHTTHHHHHHTTT
T ss_pred             ----hhhHHHHHHHhcccchHHHHHHHhhhhHHHHHHHHHHHhhhhcccc-ccchhhhhhhhhhHHHHh
Confidence                2455667788999999999999654 57899999999999988765 666677677777666544

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.65  E-value=7.3e-15  Score=139.54  Aligned_cols=218  Identities=15%  Similarity=0.148  Sum_probs=172.4

Q ss_pred             HHHHHHHhhCCCCCHHHHHHHHHHHHhccC-CCCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHHHHH
Q 015951          128 IQIAIDDLNNSTLSLEDSQRALQELLILVE-PIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQ  206 (397)
Q Consensus       128 mk~~i~~L~~~~~s~e~k~~AL~~L~~Lve-~iDnA~~~~~lGGl~~Li~lL~s~~~~ir~~Aa~vLg~~aqNNp~~Q~~  206 (397)
                      |..+++.|.++  +++.+..|...|.+++. +-++.+.+...||+|+|+++|+++++++|..|+++|++++..|+..|..
T Consensus         4 ip~lv~~L~~~--~~~~~~~a~~~l~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~~~~   81 (457)
T d1xm9a1           4 IPKAVQYLSSQ--DEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLE   81 (457)
T ss_dssp             HHHHHHHHHSS--CTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHH
T ss_pred             HHHHHHHhCCC--CHHHHHHHHHHHHHHHcCCHHHHHHHHHCCcHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHH
Confidence            56788888776  57889999999999885 5678999999999999999999999999999999999999999999999


Q ss_pred             HHHcCcHHHHHHhhcCC-CHHHHHHHHHHHHHHhcCChh-----------------------------------------
Q 015951          207 VLELGALSKLMKMVKSS-FVEEAVKALYTVSSLIRNNLA-----------------------------------------  244 (397)
Q Consensus       207 vl~~g~lp~Ll~LL~s~-~~~v~~kAl~ALS~LiR~~~~-----------------------------------------  244 (397)
                      +.+.|+++.|++++.+. +.+++..|+++|.++..+...                                         
T Consensus        82 i~~~g~v~~li~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  161 (457)
T d1xm9a1          82 TRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFF  161 (457)
T ss_dssp             HHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTHHHHHHHHHHHHHHHTTHHHHTCC---------CCCHHHHH
T ss_pred             HHHCCChHHHHHHHhccCcHHHHHHHHHHHHHHHhhhhhHHHHHhcccHHHHHHHHhhhhhhhcchhhhhcccccHHHHH
Confidence            99999999999988754 455665555555555332100                                         


Q ss_pred             --------------------------------------------------------------------------------
Q 015951          245 --------------------------------------------------------------------------------  244 (397)
Q Consensus       245 --------------------------------------------------------------------------------  244 (397)
                                                                                                      
T Consensus       162 ~a~~~l~~~~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (457)
T d1xm9a1         162 NATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAY  241 (457)
T ss_dssp             HHHHHHHHHTTSHHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC----
T ss_pred             HHHHHHHHHhcCchHHHHHHHHhccHHHHHHHHhcchhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhhhhhhh
Confidence                                                                                            


Q ss_pred             --------------------------------------------------------------------------------
Q 015951          245 --------------------------------------------------------------------------------  244 (397)
Q Consensus       245 --------------------------------------------------------------------------------  244 (397)
                                                                                                      
T Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~l~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~  321 (457)
T d1xm9a1         242 TEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSG  321 (457)
T ss_dssp             ------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHHHH
T ss_pred             hHHHhhhhhhhhhHHHHHHHHhhhhHHhhhhhHHHHHHHhhcHHHHHHHHHhcccchHHHHHHHHHHHHHhhccccchHH
Confidence                                                                                            


Q ss_pred             -cHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHHhCCcHHHHHHhccCC------ChH
Q 015951          245 -GQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASA------DLD  317 (397)
Q Consensus       245 -~~~~f~~~gGi~~L~~lL~s~~~d~klr~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~------d~d  317 (397)
                       .+..+.+.||++.|+.+++++  +..++..+++++.+|+.      ++..+..+.+ +.++.++.+|...      +.+
T Consensus       322 ~~~~~~~~~~~l~~L~~~l~~~--~~~v~~~a~~~l~~La~------~~~~~~~i~~-~~i~~li~~L~~~~~~~~~~~~  392 (457)
T d1xm9a1         322 MSQLIGLKEKGLPQIARLLQSG--NSDVVRSGASLLSNMSR------HPLLHRVMGN-QVFPEVTRLLTSHTGNTSNSED  392 (457)
T ss_dssp             HHHHHHTTSCCHHHHHHHTTCS--CHHHHHHHHHHHHHHHT------SGGGHHHHHH-HTHHHHHHTTTSCCSCSTTHHH
T ss_pred             HHHHHHHHcCChHHHHhhhcCc--cHHHHHHHHHHHHHHhh------ChhHHHHHHH-hhHHHHHHHHhccccCcCCcHH
Confidence             112223467888888888876  55688899999999985      3455555554 6688899888542      457


Q ss_pred             HHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHHHHH
Q 015951          318 LQEKALAAIKNLLQLRTTEALVLKDFCGLDTALERLRQQ  356 (397)
Q Consensus       318 v~E~aL~aL~~L~~~~~~~r~~~~~~~gL~~~L~~Lr~~  356 (397)
                      +++.++.+|.+|+...+..++.+.+.||+..++..+++.
T Consensus       393 v~~~a~~~L~~l~~~~~~~~~~l~~~g~i~~L~~l~~~~  431 (457)
T d1xm9a1         393 ILSSACYTVRNLMASQPQLAKQYFSSSMLNNIINLCRSS  431 (457)
T ss_dssp             HHHHHHHHHHHHHTTCTHHHHHHCCHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHhCC
Confidence            999999999999988777888888788888888766543

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HspBP1 domain
domain: Hsp70-binding protein 1 (HspBP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.62  E-value=2.3e-15  Score=139.85  Aligned_cols=171  Identities=14%  Similarity=0.034  Sum_probs=149.0

Q ss_pred             CCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCcHHHHHH-hhcCCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHH
Q 015951          179 NHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMK-MVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLM  257 (397)
Q Consensus       179 ~s~~~~ir~~Aa~vLg~~aqNNp~~Q~~vl~~g~lp~Ll~-LL~s~~~~v~~kAl~ALS~LiR~~~~~~~~f~~~gGi~~  257 (397)
                      .+.+.+.|..|+.+|..++. +......+...|+++.|+. +++++++++|..|+++|++++++++..+..+.+.||++.
T Consensus        27 ~~~~~~~~~~Al~~L~~L~~-~~d~a~~l~~~gg~~~ll~~ll~s~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~~i~~  105 (264)
T d1xqra1          27 QAADQQEREGALELLADLCE-NMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRK  105 (264)
T ss_dssp             HHHHHHHHHHHHHHHHHHHT-SHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHH
T ss_pred             cCCCHHHHHHHHHHHHHHHc-CHHHHHHHHHcCCHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHH
Confidence            34567899999999999996 5668888999999999985 788888999999999999999999999999999999999


Q ss_pred             HHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHHhCCcHHHHHHhccCCChHHHHHHHHHHHHHhcCChHHH
Q 015951          258 LQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLRTTEA  337 (397)
Q Consensus       258 L~~lL~s~~~d~klr~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~dv~E~aL~aL~~L~~~~~~~r  337 (397)
                      |+.++.+. .+..++.++++++++|+.+     ++.....+...|.++.++.+|.+++.+++.+++.+|.+|+...+..+
T Consensus       106 Lv~lL~~~-~~~~v~~~a~~aL~~l~~~-----~~~~~~~~~~~~gi~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~  179 (264)
T d1xqra1         106 LLRLLDRD-ACDTVRVKALFAISCLVRE-----QEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHK  179 (264)
T ss_dssp             HHHHHHHC-SCHHHHHHHHHHHHHHHTT-----CHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGH
T ss_pred             HHHHhhcC-CCHHHHHHHHHHHHHHhcc-----chhhHHHHHHhhhhhHHHHHHhcCchHHHHHHHHHHHHHHhccHHHH
Confidence            99999754 2567999999999999963     55667788899999999999999999999999999999998777677


Q ss_pred             HHHHhcCChHHHHHHHHHH
Q 015951          338 LVLKDFCGLDTALERLRQQ  356 (397)
Q Consensus       338 ~~~~~~~gL~~~L~~Lr~~  356 (397)
                      ..+.+.++++.++..|++.
T Consensus       180 ~~~~~~~~v~~L~~lL~~~  198 (264)
T d1xqra1         180 GTLCSMGMVQQLVALVRTE  198 (264)
T ss_dssp             HHHHHTTHHHHHHHHHTSC
T ss_pred             HHHHHhhhHHHHHHHHcCC
Confidence            7787777787777776543

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.21  E-value=5e-06  Score=82.75  Aligned_cols=172  Identities=11%  Similarity=0.016  Sum_probs=121.4

Q ss_pred             CHHHHHHHHHHHHhccCCCCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCcHHHHHHhh
Q 015951          141 SLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMV  220 (397)
Q Consensus       141 s~e~k~~AL~~L~~Lve~iDnA~~~~~lGGl~~Li~lL~s~~~~ir~~Aa~vLg~~aqNNp~~Q~~vl~~g~lp~Ll~LL  220 (397)
                      ....+..+++.+..++......  +..-...+.++.+|..+...||..|+++++.++++...  + ......+|.+..++
T Consensus       415 ~~~~r~~~~~~l~~l~~~~~~~--~~~~~l~~~l~~~l~D~~~~VR~~A~~~L~~l~~~~~~--~-~~~~~i~~~l~~~~  489 (588)
T d1b3ua_         415 KWRVRLAIIEYMPLLAGQLGVE--FFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGK--E-WAHATIIPKVLAMS  489 (588)
T ss_dssp             SHHHHHHHHHHHHHHHHHHCGG--GCCHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCH--H-HHHHHTHHHHHHTT
T ss_pred             cHHHHHHHHHHHHHHHHHcChH--hHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHhCc--H-HHHHHHHHHHHHHh
Confidence            4456666666666554432211  11112345667888899999999999999999875321  1 12234789999999


Q ss_pred             cCCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHHh
Q 015951          221 KSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRD  300 (397)
Q Consensus       221 ~s~~~~v~~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klr~kA~~lL~~L~~~~l~~~~~~~~~~l~~  300 (397)
                      .+++...|..++++++.+....+.   .+....-++.|..++.++  .+.+|..++.++..+...    .+    .....
T Consensus       490 ~~~~~~~R~~~~~~l~~l~~~~~~---~~~~~~ilp~ll~~~~D~--v~nVR~~a~~~l~~i~~~----~~----~~~~~  556 (588)
T d1b3ua_         490 GDPNYLHRMTTLFCINVLSEVCGQ---DITTKHMLPTVLRMAGDP--VANVRFNVAKSLQKIGPI----LD----NSTLQ  556 (588)
T ss_dssp             TCSCHHHHHHHHHHHHHHHHHHHH---HHHHHHTHHHHHHGGGCS--CHHHHHHHHHHHHHHGGG----SC----HHHHH
T ss_pred             cCCCHHHHHHHHHHHHHHHHHcCh---HHHHHHHHHHHHHHcCCC--CHHHHHHHHHHHHHHHHH----cC----cHhHH
Confidence            998888899999999998765443   334455788999999886  456899999999998752    11    12233


Q ss_pred             CCcHHHHHHhccCCChHHHHHHHHHHHHHh
Q 015951          301 RFFLKSVVDLTASADLDLQEKALAAIKNLL  330 (397)
Q Consensus       301 ~g~v~~Lv~lL~~~d~dv~E~aL~aL~~L~  330 (397)
                      ..+.+.+..+++.+|.+|++.|..|+..|+
T Consensus       557 ~~i~~~l~~L~~D~d~dVr~~A~~al~~l~  586 (588)
T d1b3ua_         557 SEVKPILEKLTQDQDVDVKYFAQEALTVLS  586 (588)
T ss_dssp             HHHHHHHHHHTTCSSHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHcCCCCHHHHHHHHHHHHHHh
Confidence            445677777788889999999999998775

>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: MTH187
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=98.09  E-value=1.6e-07  Score=74.71  Aligned_cols=109  Identities=9%  Similarity=0.051  Sum_probs=87.8

Q ss_pred             cCCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHH
Q 015951          178 LNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLM  257 (397)
Q Consensus       178 L~s~~~~ir~~Aa~vLg~~aqNNp~~Q~~vl~~g~lp~Ll~LL~s~~~~v~~kAl~ALS~LiR~~~~~~~~f~~~gGi~~  257 (397)
                      |+++++.||..|++.||.+.   +         .+++.|++++.+++..+|..|+++|+.+-  .+         ..++.
T Consensus         1 L~D~~~~VR~~A~~aL~~~~---~---------~~~~~L~~~l~d~~~~vR~~a~~~L~~~~--~~---------~~~~~   57 (111)
T d1te4a_           1 MADENKWVRRDVSTALSRMG---D---------EAFEPLLESLSNEDWRIRGAAAWIIGNFQ--DE---------RAVEP   57 (111)
T ss_dssp             CCSSCCCSSSSCCSSTTSCS---S---------TTHHHHHHGGGCSCHHHHHHHHHHHGGGC--SH---------HHHHH
T ss_pred             CCCcCHHHHHHHHHHHHHhC---H---------HHHHHHHHHHcCCCHHHHHHHHHHHHhcc--hh---------hhHHH
Confidence            56788999999999998652   1         36889999999999999999999998652  11         24678


Q ss_pred             HHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHHhCCcHHHHHHhccCCChHHHHHHHHHHH
Q 015951          258 LQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIK  327 (397)
Q Consensus       258 L~~lL~s~~~d~klr~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~dv~E~aL~aL~  327 (397)
                      |..+|+++  +..+|..|+.+|..+-.                ...++.|..++..+++.++..|+.+|.
T Consensus        58 L~~~l~d~--~~~VR~~a~~aL~~i~~----------------~~~~~~L~~ll~d~~~~vr~~A~~aL~  109 (111)
T d1te4a_          58 LIKLLEDD--SGFVRSGAARSLEQIGG----------------ERVRAAMEKLAETGTGFARKVAVNYLE  109 (111)
T ss_dssp             HHHHHHHC--CTHHHHHHHHHHHHHCS----------------HHHHHHHHHHTTSCCTHHHHHHHHHGG
T ss_pred             HHhhhccc--hhHHHHHHHHHHHHhCc----------------cchHHHHHHHHcCCCHHHHHHHHHHHH
Confidence            89999876  56799999999988742                245778888999999999999998764

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.93  E-value=0.00021  Score=70.64  Aligned_cols=171  Identities=13%  Similarity=0.058  Sum_probs=110.6

Q ss_pred             HHHHHHHHHHHHhccCCCCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCcHHHHHHhhc
Q 015951          142 LEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVK  221 (397)
Q Consensus       142 ~e~k~~AL~~L~~Lve~iDnA~~~~~lGGl~~Li~lL~s~~~~ir~~Aa~vLg~~aqNNp~~Q~~vl~~g~lp~Ll~LL~  221 (397)
                      .+.+..+.+.|..++..+...+..  ...++++..++.++++.||..|+.+++.+++..+..   .++.-.+|.+..+.+
T Consensus        62 ~ev~~~~~~~l~~~~~~~~~~~~~--~~ll~~l~~l~~~~~~~Vr~~a~~~l~~i~~~~~~~---~~~~~l~p~i~~L~~  136 (588)
T d1b3ua_          62 DEVLLALAEQLGTFTTLVGGPEYV--HCLLPPLESLATVEETVVRDKAVESLRAISHEHSPS---DLEAHFVPLVKRLAG  136 (588)
T ss_dssp             HHHHHHHHHHHTTCSGGGTSGGGG--GGGHHHHHHHTTSSCHHHHHHHHHHHHHHHTTSCHH---HHHHTHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHcCChhHH--HHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhCCHH---HHHHHHHHHHHHHhc
Confidence            355666677777665543322221  123677778888999999999999999999764422   233345677777777


Q ss_pred             CCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHHhC
Q 015951          222 SSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDR  301 (397)
Q Consensus       222 s~~~~v~~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klr~kA~~lL~~L~~~~l~~~~~~~~~~l~~~  301 (397)
                      ++....|..|+..++.+.....+...    ..-++.+..++.++  ++.+|+.++..+..++..    ..    ......
T Consensus       137 ~~~~~~r~~a~~ll~~~~~~~~~~~~----~~l~~~~~~l~~D~--~~~VR~~a~~~l~~~~~~----~~----~~~~~~  202 (588)
T d1b3ua_         137 GDWFTSRTSACGLFSVCYPRVSSAVK----AELRQYFRNLCSDD--TPMVRRAAASKLGEFAKV----LE----LDNVKS  202 (588)
T ss_dssp             CSSHHHHHHHGGGHHHHTTTSCHHHH----HHHHHHHHHHHTCS--CHHHHHHHHHHHHHHHHT----SC----HHHHHH
T ss_pred             ccchHHHHHHHHHHHHHHHHhhHHHH----HHHHHHHHHHhccC--CHHHHHHHHHHHHHHHHH----hc----HHHHHH
Confidence            77677788888888877654332211    12356677777765  567888999998888752    11    112233


Q ss_pred             CcHHHHHHhccCCChHHHHHHHHHHHHHhc
Q 015951          302 FFLKSVVDLTASADLDLQEKALAAIKNLLQ  331 (397)
Q Consensus       302 g~v~~Lv~lL~~~d~dv~E~aL~aL~~L~~  331 (397)
                      .+++.+..+++.++..++..++.++..++.
T Consensus       203 ~l~~~l~~l~~d~~~~vr~~a~~~l~~i~~  232 (588)
T d1b3ua_         203 EIIPMFSNLASDEQDSVRLLAVEACVNIAQ  232 (588)
T ss_dssp             THHHHHHHHHTCSCHHHHTTHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCchhhHHHHHHHHHHhhc
Confidence            455666666666677777777777766654

>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: MTH187
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=97.92  E-value=5.1e-06  Score=65.71  Aligned_cols=88  Identities=17%  Similarity=0.228  Sum_probs=71.6

Q ss_pred             CCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHH
Q 015951          169 GGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEM  248 (397)
Q Consensus       169 GGl~~Li~lL~s~~~~ir~~Aa~vLg~~aqNNp~~Q~~vl~~g~lp~Ll~LL~s~~~~v~~kAl~ALS~LiR~~~~~~~~  248 (397)
                      .++++|+..|+++++.+|..|+++||.+.  .+         +++|.|+.+|.++++.+|..|+.||+.+  +.+     
T Consensus        22 ~~~~~L~~~l~d~~~~vR~~a~~~L~~~~--~~---------~~~~~L~~~l~d~~~~VR~~a~~aL~~i--~~~-----   83 (111)
T d1te4a_          22 EAFEPLLESLSNEDWRIRGAAAWIIGNFQ--DE---------RAVEPLIKLLEDDSGFVRSGAARSLEQI--GGE-----   83 (111)
T ss_dssp             TTHHHHHHGGGCSCHHHHHHHHHHHGGGC--SH---------HHHHHHHHHHHHCCTHHHHHHHHHHHHH--CSH-----
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHhcc--hh---------hhHHHHHhhhccchhHHHHHHHHHHHHh--Ccc-----
Confidence            47899999999999999999999999764  22         3689999999999999999999999987  222     


Q ss_pred             HHhcCcHHHHHHhhcCCCccHHHHHHHHHHHH
Q 015951          249 FYVEAGDLMLQDILGNSSFEIRLHRKAVSLVG  280 (397)
Q Consensus       249 f~~~gGi~~L~~lL~s~~~d~klr~kA~~lL~  280 (397)
                          ..++.|..++.++  +..+|..|+.+|.
T Consensus        84 ----~~~~~L~~ll~d~--~~~vr~~A~~aL~  109 (111)
T d1te4a_          84 ----RVRAAMEKLAETG--TGFARKVAVNYLE  109 (111)
T ss_dssp             ----HHHHHHHHHTTSC--CTHHHHHHHHHGG
T ss_pred             ----chHHHHHHHHcCC--CHHHHHHHHHHHH
Confidence                3467788888876  5568888877653

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin beta2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.91  E-value=5.7e-05  Score=79.21  Aligned_cols=149  Identities=14%  Similarity=0.095  Sum_probs=109.3

Q ss_pred             HHHHhcCCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhc-HHHHHh
Q 015951          173 VLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAG-QEMFYV  251 (397)
Q Consensus       173 ~Li~lL~s~~~~ir~~Aa~vLg~~aqNNp~~Q~~vl~~g~lp~Ll~LL~s~~~~v~~kAl~ALS~LiR~~~~~-~~~f~~  251 (397)
                      .+...+++++...|..|+.++|.++.+.++.-...+. ..+|.|+..++++++.+|..|+|+||.++....+. ...+ -
T Consensus       399 ~l~~~l~s~~~~~reaa~~alg~i~eg~~~~~~~~l~-~li~~l~~~l~d~~~~Vr~~a~~~l~~~~~~~~~~~~~~~-~  476 (888)
T d1qbkb_         399 LLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYLP-ELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTY-L  476 (888)
T ss_dssp             HHHHTTTSSSHHHHHHHHHHHHHHTTTSHHHHTTTHH-HHHHHHHHHTTSSCHHHHHHHHHHHHHTHHHHHSSCHHHH-T
T ss_pred             HHHHhhccchhHHHHHHHHHhhhhhhhHHHHhcccch-hhhHHHHHhccCCCHHHHHHHHHHHHHHHHHhhhhhhhhh-h
Confidence            3335678899999999999999999875543332222 36888999999989999999999999887543222 2222 2


Q ss_pred             cCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHHhCCcHHHHHHhccCCChHHHHHHHHHHHHHhc
Q 015951          252 EAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQ  331 (397)
Q Consensus       252 ~gGi~~L~~lL~s~~~d~klr~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~dv~E~aL~aL~~L~~  331 (397)
                      ...++.|...+.++  +.+++..|++++.+++..    ..+...+.+.  .+++.++..+...+......++.++.+++.
T Consensus       477 ~~~l~~ll~~l~d~--~~~V~~~a~~al~~l~~~----~~~~l~p~~~--~il~~l~~~l~~~~~~~~~~~~~al~~l~~  548 (888)
T d1qbkb_         477 KPLMTELLKRILDS--NKRVQEAACSAFATLEEE----ACTELVPYLA--YILDTLVFAFSKYQHKNLLILYDAIGTLAD  548 (888)
T ss_dssp             TTHHHHHHHHHSSS--CHHHHHHHHHHHHHHHHH----HTTSSGGGHH--HHHHHHHHHTTTCCHHHHHHHHHHHHHHHH
T ss_pred             hhhHHHHHHHhcCC--CHHHHHHHHHHHHHHHHH----hhhhhhhHHH--HHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence            45677788877775  568999999999999864    3445555542  467778888888877777777888877764

>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: Hypothetical protein YibA
species: Escherichia coli [TaxId: 562]

Probab=97.86  E-value=0.00012  Score=64.62  Aligned_cols=98  Identities=11%  Similarity=0.036  Sum_probs=67.0

Q ss_pred             cCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHH
Q 015951          168 LGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQE  247 (397)
Q Consensus       168 lGGl~~Li~lL~s~~~~ir~~Aa~vLg~~aqNNp~~Q~~vl~~g~lp~Ll~LL~s~~~~v~~kAl~ALS~LiR~~~~~~~  247 (397)
                      -.-.+.|+.+|+++++.+|..|+.+|+...  ++         .++|.|++++++++..+|..|+.+|+.+...... ..
T Consensus        18 ~~~~~~L~~~L~d~~~~vR~~A~~~L~~~~--~~---------~~~~~l~~~l~d~~~~vr~~a~~aL~~l~~~~~~-~~   85 (276)
T d1oyza_          18 KLNDDELFRLLDDHNSLKRISSARVLQLRG--GQ---------DAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKC-ED   85 (276)
T ss_dssp             TSCHHHHHHHTTCSSHHHHHHHHHHHHHHC--CH---------HHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTTT-HH
T ss_pred             cCCHHHHHHHhcCCCHHHHHHHHHHHHhhC--CH---------hHHHHHHHHHcCCCHHHHHHHHHHHHHhcccccc-cc
Confidence            345667788888889999999999888774  22         3578888888888888888888888877432211 11


Q ss_pred             HHHhcCcHHHHHH-hhcCCCccHHHHHHHHHHHHHHhh
Q 015951          248 MFYVEAGDLMLQD-ILGNSSFEIRLHRKAVSLVGDLAK  284 (397)
Q Consensus       248 ~f~~~gGi~~L~~-lL~s~~~d~klr~kA~~lL~~L~~  284 (397)
                      .     .++.|.. +++++  +..++..++..+..++.
T Consensus        86 ~-----~~~~l~~~~l~d~--~~~vr~~a~~aL~~~~~  116 (276)
T d1oyza_          86 N-----VFNILNNMALNDK--SACVRATAIESTAQRCK  116 (276)
T ss_dssp             H-----HHHHHHHHHHHCS--CHHHHHHHHHHHHHHHH
T ss_pred             c-----hHHHHHHHHhcCC--ChhHHHHHHHHHHHHcc
Confidence            1     1223333 34444  55678888888887764

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.76  E-value=0.00029  Score=65.78  Aligned_cols=198  Identities=14%  Similarity=0.102  Sum_probs=123.9

Q ss_pred             HHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhccCCCCchh--HHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCh
Q 015951          124 DAQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNAN--DLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNP  201 (397)
Q Consensus       124 d~~lmk~~i~~L~~~~~s~e~k~~AL~~L~~Lve~iDnA~--~~~~lGGl~~Li~lL~s~~~~ir~~Aa~vLg~~aqNNp  201 (397)
                      -..++...+..+.+.+.+.+.+..|+..+..++.......  .......++.+...+.+++++++..++.+++.+++..|
T Consensus       169 ~~~il~~~~~~l~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~i~~~~~  248 (458)
T d1ibrb_         169 SNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYY  248 (458)
T ss_dssp             HHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCG
T ss_pred             HHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhHhhHHHHhcCCCHHHHHHHHHHHHHHHHHhH
Confidence            3456777788888877788889999999988887653221  12222345566678899999999999999999997765


Q ss_pred             HHHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHH-------------------------------------------
Q 015951          202 LVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSL-------------------------------------------  238 (397)
Q Consensus       202 ~~Q~~vl~~g~lp~Ll~LL~s~~~~v~~kAl~ALS~L-------------------------------------------  238 (397)
                      ..-...+.....+.+.....++.+.++..|+..++.+                                           
T Consensus       249 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~a~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~  328 (458)
T d1ibrb_         249 QYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQT  328 (458)
T ss_dssp             GGCTTTTTTTHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHhhhHHHHHHHHHHHHHHHHHhhhHHhh
Confidence            3221111222223333444444445554444444433                                           


Q ss_pred             --------------------------hcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCC
Q 015951          239 --------------------------IRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHK  292 (397)
Q Consensus       239 --------------------------iR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klr~kA~~lL~~L~~~~l~~~~~  292 (397)
                                                +...+..   +. ..-++.+...++++  +.+.|.-|+.+++.++..-   ...
T Consensus       329 ~~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~---~~-~~l~~~i~~~l~s~--~~~~r~aal~~l~~i~~~~---~~~  399 (458)
T d1ibrb_         329 LTKQDENDDDDDWNPCKAAGVCLMLLATCCEDD---IV-PHVLPFIKEHIKNP--DWRYRDAAVMAFGCILEGP---EPS  399 (458)
T ss_dssp             TTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTTT---HH-HHHHHHHHHHTTCS--SHHHHHHHHHHHHHTSSSS---CTT
T ss_pred             hhcchhhhccccccHHHHHHHHHHHHHHhccHh---hh-hHHHHHHHHHhcCC--CHHHHHHHHHHHHHHHHhc---CHh
Confidence                                      2211110   00 01234455556655  6678888899999887420   111


Q ss_pred             CcchhHHhCCcHHHHHHhccCCChHHHHHHHHHHHHHhcC
Q 015951          293 VEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQL  332 (397)
Q Consensus       293 ~~~~~l~~~g~v~~Lv~lL~~~d~dv~E~aL~aL~~L~~~  332 (397)
                      ...+.+  ..+++.++..++++++.||..|+.+|+.++..
T Consensus       400 ~~~~~l--~~i~~~l~~~l~d~~~~VR~~a~~~l~~i~~~  437 (458)
T d1ibrb_         400 QLKPLV--IQAMPTLIELMKDPSVVVRDTAAWTVGRICEL  437 (458)
T ss_dssp             TTCTTT--TTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHH--HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHH
Confidence            222222  35788999999999999999999999998854

>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.70  E-value=0.00089  Score=67.43  Aligned_cols=199  Identities=10%  Similarity=0.053  Sum_probs=133.4

Q ss_pred             CHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhccCCCCchhHHHh-------c------CCHHHHHHhcCCCCHHHHHHH
Q 015951          123 SDAQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSK-------L------GGLSVLVGQLNHPDTDIRKIS  189 (397)
Q Consensus       123 ~d~~lmk~~i~~L~~~~~s~e~k~~AL~~L~~Lve~iDnA~~~~~-------l------GGl~~Li~lL~s~~~~ir~~A  189 (397)
                      +..+.+..+++++.+.+.+.+.|..|.-.|.+.+........-..       +      .-...+++.|.++++.||..+
T Consensus        36 ~~~~~~~~l~~il~~~~~~~~~r~~A~i~lkn~i~~~~~~~~~~~~~~~~~~i~~~~~~~ik~~ll~~l~~~~~~vr~~~  115 (861)
T d2bpta1          36 NFLQFAGLSSQVLIDENTKLEGRILAALTLKNELVSKDSVKTQQFAQRWITQVSPEAKNQIKTNALTALVSIEPRIANAA  115 (861)
T ss_dssp             CHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHTTTCCSSHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHTCSSHHHHHHH
T ss_pred             CchHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhcccchhhhhHHhhhHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHH
Confidence            457888899999999888888898888888888876543321111       1      112456677888999999999


Q ss_pred             HHHHHHHhcCChHHHHHHHHc---CcHHHHHHhhcCCC-HHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHH---HHhh
Q 015951          190 AWILGKASQNNPLVQKQVLEL---GALSKLMKMVKSSF-VEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLML---QDIL  262 (397)
Q Consensus       190 a~vLg~~aqNNp~~Q~~vl~~---g~lp~Ll~LL~s~~-~~v~~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L---~~lL  262 (397)
                      +.+++.++...      +-+.   ..+|.|++.+.+++ ..++..|+.+++.++....+....+. ..-.+.|   ...+
T Consensus       116 a~~i~~i~~~~------~p~~~wpeli~~L~~~~~s~~~~~~~~~al~~l~~i~e~~~~~~~~~~-~~~~~il~~i~~~~  188 (861)
T d2bpta1         116 AQLIAAIADIE------LPHGAWPELMKIMVDNTGAEQPENVKRASLLALGYMCESADPQSQALV-SSSNNILIAIVQGA  188 (861)
T ss_dssp             HHHHHHHHHHH------GGGTCCHHHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHTSSTTSSTTG-GGHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHh------CCcCchHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhhHHHHHHH-HHHHHHHHHHHHHH
Confidence            99999998531      1111   25788888887755 56788899999999876544322222 1122333   3334


Q ss_pred             cCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHHhCCcHHHHHHhccCCChHHHHHHHHHHHHHhcC
Q 015951          263 GNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQL  332 (397)
Q Consensus       263 ~s~~~d~klr~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~dv~E~aL~aL~~L~~~  332 (397)
                      .+...+..++..+..++.++...-    .+..........+++.+...+..++++++..+..++..++..
T Consensus       189 ~~~~~~~~v~~~a~~~l~~~~~~~----~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~i~~~  254 (861)
T d2bpta1         189 QSTETSKAVRLAALNALADSLIFI----KNNMEREGERNYLMQVVCEATQAEDIEVQAAAFGCLCKIMSK  254 (861)
T ss_dssp             STTCCCHHHHHHHHHHHHHHGGGC----HHHHTSHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHH
T ss_pred             hcccCCHHHHHHHHHHHHHHHHHH----hHhHHhhhhhhHHHHhHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence            444345678999999999887531    111111112234667778888999999999999999988753

>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: Hypothetical protein YibA
species: Escherichia coli [TaxId: 562]

Probab=97.68  E-value=0.0014  Score=57.37  Aligned_cols=128  Identities=10%  Similarity=0.011  Sum_probs=83.6

Q ss_pred             HHHHHhhCCCCCHHHHHHHHHHHHhccCCCCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHHHHHHHH
Q 015951          130 IAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLE  209 (397)
Q Consensus       130 ~~i~~L~~~~~s~e~k~~AL~~L~~Lve~iDnA~~~~~lGGl~~Li~lL~s~~~~ir~~Aa~vLg~~aqNNp~~Q~~vl~  209 (397)
                      ++++.|.++  ++..|..|...|..+-.          -..++.|+.+|+++++.+|..|+++|+.+..... ....   
T Consensus        23 ~L~~~L~d~--~~~vR~~A~~~L~~~~~----------~~~~~~l~~~l~d~~~~vr~~a~~aL~~l~~~~~-~~~~---   86 (276)
T d1oyza_          23 ELFRLLDDH--NSLKRISSARVLQLRGG----------QDAVRLAIEFCSDKNYIRRDIGAFILGQIKICKK-CEDN---   86 (276)
T ss_dssp             HHHHHTTCS--SHHHHHHHHHHHHHHCC----------HHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTT-THHH---
T ss_pred             HHHHHhcCC--CHHHHHHHHHHHHhhCC----------HhHHHHHHHHHcCCCHHHHHHHHHHHHHhccccc-cccc---
Confidence            455666654  57788888888865421          1357888899999999999999999998875433 2221   


Q ss_pred             cCcHHHHH-HhhcCCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHH
Q 015951          210 LGALSKLM-KMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDL  282 (397)
Q Consensus       210 ~g~lp~Ll-~LL~s~~~~v~~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klr~kA~~lL~~L  282 (397)
                        .++.|+ .+++++++.++..|+++|+.+..+.+....     ..++.+...+.++  +..++..++..+..+
T Consensus        87 --~~~~l~~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~~-----~~~~~l~~~~~d~--~~~vr~~a~~~l~~~  151 (276)
T d1oyza_          87 --VFNILNNMALNDKSACVRATAIESTAQRCKKNPIYSP-----KIVEQSQITAFDK--STNVRRATAFAISVI  151 (276)
T ss_dssp             --HHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGGGHH-----HHHHHHHHHTTCS--CHHHHHHHHHHHHTC
T ss_pred             --hHHHHHHHHhcCCChhHHHHHHHHHHHHccccchhhH-----HHHHHHHHHhcCc--chHHHHHHHHHHhhc
Confidence              233444 345666788899999999988765543222     2345566666654  445666666655543

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.62  E-value=0.00077  Score=71.90  Aligned_cols=190  Identities=11%  Similarity=0.118  Sum_probs=129.3

Q ss_pred             HHHHHHHhhCCCCCHHHHHHHHHHHHhccCC----CCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHH
Q 015951          128 IQIAIDDLNNSTLSLEDSQRALQELLILVEP----IDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLV  203 (397)
Q Consensus       128 mk~~i~~L~~~~~s~e~k~~AL~~L~~Lve~----iDnA~~~~~lGGl~~Li~lL~s~~~~ir~~Aa~vLg~~aqNNp~~  203 (397)
                      |..+++.+.++  +++-|..|+.+|...+.+    .|+. ...  .-++.|+.+|+.++++||..|+.|++.++...+..
T Consensus         5 ~~~ll~k~~~~--D~d~R~ma~~dl~~~l~~~~~~~~~~-~~~--~i~~~ll~~L~D~~~~Vq~~A~k~l~~l~~~~~~~   79 (1207)
T d1u6gc_           5 ISNLLEKMTSS--DKDFRFMATNDLMTELQKDSIKLDDD-SER--KVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKEY   79 (1207)
T ss_dssp             HHHHHHHTTCS--SHHHHHHHHHHHHHHTSSSCCSCCTT-HHH--HHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCHH
T ss_pred             HHHHHHhcCCC--CHhHHHHHHHHHHHHHhhcccccChH-HHH--HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCcHh
Confidence            45566666655  678888899888876642    2221 111  25778899999999999999999999999775543


Q ss_pred             HHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcH-----HHHHhcCcHHHHHHhhcCCCccHHHHHHHHHH
Q 015951          204 QKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQ-----EMFYVEAGDLMLQDILGNSSFEIRLHRKAVSL  278 (397)
Q Consensus       204 Q~~vl~~g~lp~Ll~LL~s~~~~v~~kAl~ALS~LiR~~~~~~-----~~f~~~gGi~~L~~lL~s~~~d~klr~kA~~l  278 (397)
                      +.   . ..++.|+..+.+++...+..+..+|..++...+...     ...+-..-++.|...+... .+..++..++.+
T Consensus        80 ~~---~-~l~~~L~~~l~~~~~~~r~~~~~~L~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~-~~~~v~~~al~~  154 (1207)
T d1u6gc_          80 QV---E-TIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQ-EDVSVQLEALDI  154 (1207)
T ss_dssp             HH---H-HHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCC-SCHHHHHHHHHH
T ss_pred             hH---H-HHHHHHHHHhcCCchhhhHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhhcCC-CCHHHHHHHHHH
Confidence            22   2 367888888877777778777778877766543211     1112222344455555544 356788899999


Q ss_pred             HHHHhhchhccCCCCcchhHHhCCcHHHHHHhccCCChHHHHHHHHHHHHHhcCC
Q 015951          279 VGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLR  333 (397)
Q Consensus       279 L~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~dv~E~aL~aL~~L~~~~  333 (397)
                      +..++..    ..+...+..  ..+++.++..+.+++..++..|+.||..++...
T Consensus       155 l~~l~~~----~g~~l~~~~--~~il~~l~~~l~~~~~~vR~~A~~~l~~l~~~~  203 (1207)
T d1u6gc_         155 MADMLSR----QGGLLVNFH--PSILTCLLPQLTSPRLAVRKRTIIALGHLVMSC  203 (1207)
T ss_dssp             HHHHHHH----TCSSCTTTH--HHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC
T ss_pred             HHHHHHH----hhHhhHHHH--HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHC
Confidence            9999863    222222222  246778888899999999999999999998764

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin beta2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.33  E-value=0.00077  Score=70.29  Aligned_cols=184  Identities=14%  Similarity=0.129  Sum_probs=124.4

Q ss_pred             HHHHHHHHHHHhccCCCCc-hhHHH-hcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCcHHHHHHhh
Q 015951          143 EDSQRALQELLILVEPIDN-ANDLS-KLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMV  220 (397)
Q Consensus       143 e~k~~AL~~L~~Lve~iDn-A~~~~-~lGGl~~Li~lL~s~~~~ir~~Aa~vLg~~aqNNp~~Q~~vl~~g~lp~Ll~LL  220 (397)
                      +-...+++.+..+++.... -..+. ...-++.++.++++.++++|..|..++|.++...+..=...++ ..+|.|++-+
T Consensus       637 ~~~~~~l~~l~~l~~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~vr~~a~~llgdl~~~~~~~~~~~l~-~~~~~l~~~L  715 (888)
T d1qbkb_         637 DFMIVALDLLSGLAEGLGGNIEQLVARSNILTLMYQCMQDKMPEVRQSSFALLGDLTKACFQHVKPCIA-DFMPILGTNL  715 (888)
T ss_dssp             HHHHHHHHHHHHHHHHHTTTTHHHHHTSCHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTGGGHH-HHHHHHHHTC
T ss_pred             HHHHHHHHHHHHHHHHhhhhhhhhhhHhhHHHHHHHHhCCCChHHHHHHHHHHHHHHHhhhHHHHHHHH-HHHHHHHHHh
Confidence            3344556666555543321 12222 2344666778899999999999999999998754432111122 3678888888


Q ss_pred             cCCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHHh
Q 015951          221 KSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRD  300 (397)
Q Consensus       221 ~s~~~~v~~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klr~kA~~lL~~L~~~~l~~~~~~~~~~l~~  300 (397)
                      +++..+++..|+|+++-++.+.+.....++ ..-++.|+.++++++.+..++.+++.+++.|+..     .|+...-...
T Consensus       716 ~~~~~~v~~~a~~~ig~ia~~~~~~~~py~-~~il~~L~~il~~~~~~~~v~~n~~~~lgrl~~~-----~p~~~~~~l~  789 (888)
T d1qbkb_         716 NPEFISVCNNATWAIGEISIQMGIEMQPYI-PMVLHQLVEIINRPNTPKTLLENTAITIGRLGYV-----CPQEVAPMLQ  789 (888)
T ss_dssp             CGGGHHHHHHHHHHHHHHHHHTGGGGGGGS-HHHHHHHHHHHTCTTCCHHHHHHHHHHHHHHHHH-----CHHHHGGGGG
T ss_pred             CcCCHHHHHHHHHHHHHHHHHHHHHhhhhH-HHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHHH-----CHHHHHhhHH
Confidence            887888999999999999887665544443 3578899999998766667899999999999852     3322211122


Q ss_pred             CCcHHHHHHhccC-CChHHHHHHHHHHHHHhcCCh
Q 015951          301 RFFLKSVVDLTAS-ADLDLQEKALAAIKNLLQLRT  334 (397)
Q Consensus       301 ~g~v~~Lv~lL~~-~d~dv~E~aL~aL~~L~~~~~  334 (397)
                       .+++.++..|.. .|..-++.|...+..+...++
T Consensus       790 -~~~~~~~~~l~~~~d~~ek~~~~~g~~~~i~~~p  823 (888)
T d1qbkb_         790 -QFIRPWCTSLRNIRDNEEKDSAFRGICTMISVNP  823 (888)
T ss_dssp             -GTHHHHHHHHTTSCCSHHHHHHHHHHHHHHHHCG
T ss_pred             -HHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHCc
Confidence             345566665554 466678889999999887654

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.28  E-value=0.0023  Score=59.36  Aligned_cols=212  Identities=9%  Similarity=-0.043  Sum_probs=132.8

Q ss_pred             HHHHHHHHhcCCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhccCCCCchhHH------------HhcCCHHHHHHh
Q 015951          110 MEIKELMEKLKTPSDAQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDL------------SKLGGLSVLVGQ  177 (397)
Q Consensus       110 ~~L~ea~~~~~~~~d~~lmk~~i~~L~~~~~s~e~k~~AL~~L~~Lve~iDnA~~~------------~~lGGl~~Li~l  177 (397)
                      ++|++..+.    +..+.+-.++.++.+...+..-|..|.-.|...+...+....-            .+......++..
T Consensus        22 ~~L~~~~~~----~~~~~~~~l~~il~~~~~~~~~R~~A~i~lk~~l~~~~~~~~~~~~~~~~~l~~~~~~~i~~~ll~~   97 (458)
T d1ibrb_          22 KFLERAAVE----NLPTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQRWLAIDANARREVKNYVLQT   97 (458)
T ss_dssp             HHHHHHHHH----HHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhc----CchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhccCchhhhHHhhhhccCCHHHHHHHHHHHHhc
Confidence            445555442    4567788899999888777788888877777777654422111            111233456677


Q ss_pred             cCCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCcHHHHHHhhcCCC--HHHHHHHHHHHHHHhcCChhcHHHHHhcCcH
Q 015951          178 LNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSF--VEEAVKALYTVSSLIRNNLAGQEMFYVEAGD  255 (397)
Q Consensus       178 L~s~~~~ir~~Aa~vLg~~aqNNp~~Q~~vl~~g~lp~Ll~LL~s~~--~~v~~kAl~ALS~LiR~~~~~~~~f~~~gGi  255 (397)
                      +.++++.++ .++.+++.++.......   .-.+.++.|++.+.++.  ...+..++++++.++....+....-....-+
T Consensus        98 ~~~~~~~~~-~~~~~~~~i~~~~~~~~---~~~~~~~~l~~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~il  173 (458)
T d1ibrb_          98 LGTETYRPS-SASQCVAGIACAEIPVN---QWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEIL  173 (458)
T ss_dssp             TTCCCSSSC-SHHHHHHHHHHHHGGGT---CCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGGHHHHH
T ss_pred             cCCCcHHHH-HHHHHHHHHHHHhCCcc---cCcchhHHHHHHHHhhcchHHHHHHHHHHHHHHHhhccchhhhhhHHHHH
Confidence            777665544 56677776664211000   01257899999887643  5677788888888765443322211112345


Q ss_pred             HHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHHhCCcHHHHHHhccCCChHHHHHHHHHHHHHhcCC
Q 015951          256 LMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLR  333 (397)
Q Consensus       256 ~~L~~lL~s~~~d~klr~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~dv~E~aL~aL~~L~~~~  333 (397)
                      +.+...+.++..+..++..++..+..+....    ............+.+.+..++..++++++..++.++..++...
T Consensus       174 ~~~~~~l~~~~~~~~v~~~a~~~l~~~~~~~----~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~i~~~~  247 (458)
T d1ibrb_         174 TAIIQGMRKEEPSNNVKLAATNALLNSLEFT----KANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLY  247 (458)
T ss_dssp             HHHHHHHSTTCCCHHHHHHHHHHHHHHTTTT----HHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHhcccccCHHHHHHHHHHHHHHHHhh----hhhhhhHHHHHHhHhhHHHHhcCCCHHHHHHHHHHHHHHHHHh
Confidence            6777777765456678999999999887521    1111111223346677788888899999999999999988643

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.25  E-value=0.00088  Score=71.43  Aligned_cols=145  Identities=17%  Similarity=0.165  Sum_probs=105.4

Q ss_pred             HHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHHH
Q 015951          171 LSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFY  250 (397)
Q Consensus       171 l~~Li~lL~s~~~~ir~~Aa~vLg~~aqNNp~~Q~~vl~~g~lp~Ll~LL~s~~~~v~~kAl~ALS~LiR~~~~~~~~f~  250 (397)
                      |+.|+..+.+++..+|..++.|+|.++.-+|.        ..+|.|..++.+++..+|..++.++..++.+.+.....++
T Consensus       930 ~~~L~~~~~~~~~~vr~~~a~~lg~L~~~~~~--------~~lp~L~~~l~~~~~~~r~~ai~~l~~~~~~~~~~~~~~l 1001 (1207)
T d1u6gc_         930 WALLLKHCECAEEGTRNVVAECLGKLTLIDPE--------TLLPRLKGYLISGSSYARSSVVTAVKFTISDHPQPIDPLL 1001 (1207)
T ss_dssp             HHHHTTCCCCSSTTHHHHHHHHHHHHHHSSGG--------GTHHHHTTTSSSSCHHHHHHHHHHTGGGCCSSCCTHHHHH
T ss_pred             HHHHHHHhCCCcHHHHHHHHHHHHHHHhcCHH--------HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcchhhHHHH
Confidence            45555666778899999999999999987773        4799999999999999999999999999888776655544


Q ss_pred             hcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHHhCCcHHHHHHhccC-----------------
Q 015951          251 VEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTAS-----------------  313 (397)
Q Consensus       251 ~~gGi~~L~~lL~s~~~d~klr~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~-----------------  313 (397)
                      . .-++.+...|+++  +..+|+.|+.++..++.++    ..-.++.+-  .+++.+.+...-                 
T Consensus      1002 ~-~li~~ll~~l~d~--~~~vR~~al~~l~~~~~~~----p~li~~~l~--~llp~l~~~t~~~~e~ir~v~~gp~kh~~ 1072 (1207)
T d1u6gc_        1002 K-NCIGDFLKTLEDP--DLNVRRVALVTFNSAAHNK----PSLIRDLLD--TVLPHLYNETKVRKELIREVEMGPFKHTV 1072 (1207)
T ss_dssp             H-HHSTTTHHHHSSS--STHHHHHHHHHHHHHHHHC----GGGTGGGHH--HHHHHHHHTTSCCGGGEEEEEETTEEEEE
T ss_pred             H-HHHHHHHHHhCCC--CHHHHHHHHHHHHHHHHhC----hHHHHHHHH--HHHHHHHHHhccchhheeeeecCCceeec
Confidence            2 2344556678876  6679999999999998642    222333331  255555443211                 


Q ss_pred             -CChHHHHHHHHHHHHHhcC
Q 015951          314 -ADLDLQEKALAAIKNLLQL  332 (397)
Q Consensus       314 -~d~dv~E~aL~aL~~L~~~  332 (397)
                       +-.++|..|..++.+|...
T Consensus      1073 d~gl~~rk~a~e~~~~~l~~ 1092 (1207)
T d1u6gc_        1073 DDGLDIRKAAFECMYTLLDS 1092 (1207)
T ss_dssp             ETHHHHHHHHHHHHHHHHHS
T ss_pred             CCcHHHHHHHHHHHHHHHHH
Confidence             2357899999999988844

>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.08  E-value=0.0024  Score=64.56  Aligned_cols=209  Identities=9%  Similarity=-0.031  Sum_probs=134.8

Q ss_pred             HHHHHHHHhcCCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhccCCCCchhHH------------HhcCCHHHHHHh
Q 015951          110 MEIKELMEKLKTPSDAQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDL------------SKLGGLSVLVGQ  177 (397)
Q Consensus       110 ~~L~ea~~~~~~~~d~~lmk~~i~~L~~~~~s~e~k~~AL~~L~~Lve~iDnA~~~------------~~lGGl~~Li~l  177 (397)
                      ++|+++.+.    +..+.+..+++++.+.+.+.+-|..|.-.|.+.+...+....-            .+..--..+++.
T Consensus        23 ~~L~~~~~~----~~~~f~~~L~~i~~~~~~~~~iR~~A~i~lKn~i~~~~~~~~~~~~~~~~~i~~~~k~~ik~~ll~~   98 (876)
T d1qgra_          23 KFLERAAVE----NLPTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQRWLAIDANARREVKNYVLHT   98 (876)
T ss_dssp             HHHHHHHHH----HHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhc----ChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhccccchhhhhhcccccCCHHHHHHHHHHHHHH
Confidence            445555442    3467888899999998888888988888887777543321100            011122456777


Q ss_pred             cCCCCHHHHHHHHHHHHHHhcCChHHHHHHH-H--cCcHHHHHHhhcCCC--HHHHHHHHHHHHHHhcCChhcHHHHHhc
Q 015951          178 LNHPDTDIRKISAWILGKASQNNPLVQKQVL-E--LGALSKLMKMVKSSF--VEEAVKALYTVSSLIRNNLAGQEMFYVE  252 (397)
Q Consensus       178 L~s~~~~ir~~Aa~vLg~~aqNNp~~Q~~vl-~--~g~lp~Ll~LL~s~~--~~v~~kAl~ALS~LiR~~~~~~~~f~~~  252 (397)
                      |.+++. ++..++.+|+.++...      +- +  .+.+|.|++.+.+++  ..++..++.+++.++....+....-.-.
T Consensus        99 l~~~~~-~~~~~a~~i~~i~~~~------~p~~~Wpeli~~L~~~l~~~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~  171 (876)
T d1qgra_          99 LGTETY-RPSSASQCVAGIACAE------IPVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSN  171 (876)
T ss_dssp             TTTCCS-SSCHHHHHHHHHHHHH------GGGTCCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCHHHHGGGHH
T ss_pred             hcCCcH-HHHHHHHHHHHHHHHH------CCccccHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHCCHHHHHHHHH
Confidence            877664 5667899999988531      11 1  257899999887654  5678889999999886543211111112


Q ss_pred             CcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHHhCCcHHHHHHhccCCChHHHHHHHHHHHHHhcC
Q 015951          253 AGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQL  332 (397)
Q Consensus       253 gGi~~L~~lL~s~~~d~klr~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~dv~E~aL~aL~~L~~~  332 (397)
                      .-++.+...+.++..+..++..+...+.++....    .+.........-+++.+...+..++++++..+..++..+...
T Consensus       172 ~il~~i~~~l~~~~~~~~v~~~a~~~l~~~~~~~----~~~~~~~~~~~~i~~~l~~~~~~~~~~v~~~~~~~l~~l~~~  247 (876)
T d1qgra_         172 EILTAIIQGMRKEEPSNNVKLAATNALLNSLEFT----KANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSL  247 (876)
T ss_dssp             HHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGC----HHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCcCccHHHHHHHHHHHHHHHHHh----hhhhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence            3567778888765556678888888888776421    110000111223566777788889999999999999998865


Q ss_pred             C
Q 015951          333 R  333 (397)
Q Consensus       333 ~  333 (397)
                      .
T Consensus       248 ~  248 (876)
T d1qgra_         248 Y  248 (876)
T ss_dssp             S
T ss_pred             h
Confidence            3

>d1ho8a_ a.118.1.9 (A:) Regulatory subunit H of the V-type ATPase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Regulatory subunit H of the V-type ATPase
domain: Regulatory subunit H of the V-type ATPase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.44  E-value=0.02  Score=56.23  Aligned_cols=240  Identities=11%  Similarity=0.066  Sum_probs=143.3

Q ss_pred             HHHHHHHhhCCCCCHHHHHHHHHHHHhccCCCCchhH----HHhcC--CHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCh
Q 015951          128 IQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNAND----LSKLG--GLSVLVGQLNHPDTDIRKISAWILGKASQNNP  201 (397)
Q Consensus       128 mk~~i~~L~~~~~s~e~k~~AL~~L~~Lve~iDnA~~----~~~lG--Gl~~Li~lL~s~~~~ir~~Aa~vLg~~aqNNp  201 (397)
                      .+..+..+.+.+ -+|...-.|--+.+++.+-+....    +.+-.  -++++..+|++++.-+...++.+++.+++..+
T Consensus        76 ~~~~l~lL~~~s-k~d~vqyvL~Li~dLL~~d~~~~~~~~~~~~~~~~~~~~f~~~l~~~d~~~~~~s~~i~~ll~~~~~  154 (477)
T d1ho8a_          76 LIPLIHLLSTSD-NEDCKKSVQNLIAELLSSDKYGDDTVKFFQEDPKQLEQLFDVSLKGDFQTVLISGFNVVSLLVQNGL  154 (477)
T ss_dssp             HHHHHHHHHSCC-CHHHHHHHHHHHHHHHHCSSSSHHHHHHHHHCTTHHHHHHHHCSCSSHHHHHHHHHHHHHHHTSTTT
T ss_pred             HHHHHHHHhhcC-cHHHHHHHHHHHHHHHhcCcchhHHHHHHhhCccchhHHHHHhccCchhHHHHHHHHHHHHHHhccc
Confidence            445556665543 234444444444444433232222    22222  34567778888888888899999999987644


Q ss_pred             HHH---HHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHHHhcC--cHHHHHHhhcC------------
Q 015951          202 LVQ---KQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEA--GDLMLQDILGN------------  264 (397)
Q Consensus       202 ~~Q---~~vl~~g~lp~Ll~LL~s~~~~v~~kAl~ALS~LiR~~~~~~~~f~~~g--Gi~~L~~lL~s------------  264 (397)
                      ...   +....  ....+-.+..+++.....-++..++.++|. ++.+..|....  .+..|..+|..            
T Consensus       155 ~~~~~~e~l~~--~~~~l~~l~~~~~~~~~~i~v~~lq~llr~-~~~R~~fw~~~~~~~~~l~~il~~a~~~~~~~~~~~  231 (477)
T d1ho8a_         155 HNVKLVEKLLK--NNNLINILQNIEQMDTCYVCIRLLQELAVI-PEYRDVIWLHEKKFMPTLFKILQRATDSQLATRIVA  231 (477)
T ss_dssp             CCHHHHHHHHH--CHHHHHHHHCTTCHHHHHHHHHHHHHHHTS-HHHHHHHHTTHHHHHHHHHHHHHHHHC---------
T ss_pred             cccchHHHHHH--hhHHHHHhhcccccchHHHHHHHHHHHhcC-ccHHHHHHHcccchHHHHHHHHHHHhcccccchhhc
Confidence            322   22222  233333444666677777788889999886 56677775433  34555555431            


Q ss_pred             ---CCccHHHHHHHHHHHHHHhhchhccCCCCcchhHHhCC--cHHHHHHhccC-CChHHHHHHHHHHHHHhcCChH---
Q 015951          265 ---SSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRF--FLKSVVDLTAS-ADLDLQEKALAAIKNLLQLRTT---  335 (397)
Q Consensus       265 ---~~~d~klr~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g--~v~~Lv~lL~~-~d~dv~E~aL~aL~~L~~~~~~---  335 (397)
                         ++....++-.++++++-|+.      ++.....+.+.+  .+..++++++. .-..+..-++.++.|++.....   
T Consensus       232 ~~~~~~~~Ql~Y~~ll~lWlLSF------~~~~~~~l~~~~~~~i~~l~~i~~~s~KEKvvRv~l~~l~Nll~~~~~~~~  305 (477)
T d1ho8a_         232 TNSNHLGIQLQYHSLLLIWLLTF------NPVFANELVQKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRVKQHK  305 (477)
T ss_dssp             ----CCHHHHHHHHHHHHHHHTT------SHHHHHHHHTTSHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSSSTTHH
T ss_pred             ccCCCccHHHHHHHHHHHHHHHc------CHHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhhhhhhh
Confidence               12345688899999998876      345555666653  48888888754 4678888999999999875321   


Q ss_pred             --HHHHHHhcCChHHHHHHHHHHhHHhhhhhhhhhhHHhHHHHHHHHHHHH
Q 015951          336 --EALVLKDFCGLDTALERLRQQLQEVMLEEDQRDYAMDVEALRREVELIF  384 (397)
Q Consensus       336 --~r~~~~~~~gL~~~L~~Lr~~~~~l~~~e~~~~~~~~l~~~~~e~~~~~  384 (397)
                        +...+. .|++.+.+..|..+   -..|+   |-.+|++.|.+..+..+
T Consensus       306 ~~~~~~~v-~~~~l~~l~~L~~r---~~~De---dl~edl~~L~~~L~~~~  349 (477)
T d1ho8a_         306 KVIKQLLL-LGNALPTVQSLSER---KYSDE---ELRQDISNLKEILENEY  349 (477)
T ss_dssp             HHHHHHHH-HHCHHHHHHHHHSS---CCSSH---HHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHH-HcchhHHHHHHhcC---CCCCH---HHHHHHHHHHHHHHHHH
Confidence              222333 45666666655433   12344   34556766766666554

>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.42  E-value=0.018  Score=57.38  Aligned_cols=157  Identities=10%  Similarity=0.047  Sum_probs=102.9

Q ss_pred             HHHHHHHHHHhhCCCCCHHHHHHHHHHHHhccCCCCchhHHHhc---CCHHHHHHhc--CCCCHHHHHHHHHHHHHHhcC
Q 015951          125 AQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKL---GGLSVLVGQL--NHPDTDIRKISAWILGKASQN  199 (397)
Q Consensus       125 ~~lmk~~i~~L~~~~~s~e~k~~AL~~L~~Lve~iDnA~~~~~l---GGl~~Li~lL--~s~~~~ir~~Aa~vLg~~aqN  199 (397)
                      ++++..+++.+.+.+ +...+..|+..|..+++..+......-.   .-+..++..+  ..++..+|..|..+++.+...
T Consensus       133 peli~~L~~~~~s~~-~~~~~~~al~~l~~i~e~~~~~~~~~~~~~~~il~~i~~~~~~~~~~~~v~~~a~~~l~~~~~~  211 (861)
T d2bpta1         133 PELMKIMVDNTGAEQ-PENVKRASLLALGYMCESADPQSQALVSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIF  211 (861)
T ss_dssp             HHHHHHHHHHTSTTS-CHHHHHHHHHHHHHHHHTSSTTSSTTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGG
T ss_pred             HHHHHHHHHHhcCCC-cHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHH
Confidence            467777777776544 5567888999999988777654321111   1233444444  346789999999999999887


Q ss_pred             ChHHHHHH-HHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHH
Q 015951          200 NPLVQKQV-LELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSL  278 (397)
Q Consensus       200 Np~~Q~~v-l~~g~lp~Ll~LL~s~~~~v~~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klr~kA~~l  278 (397)
                      .+...... .....++.|...+.+++++++..++.++..++..++.....+...--...+....++.  +..++..+..+
T Consensus       212 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~l~~~l~~l~~~~~~~~--~~~v~~~~~~~  289 (861)
T d2bpta1         212 IKNNMEREGERNYLMQVVCEATQAEDIEVQAAAFGCLCKIMSKYYTFMKPYMEQALYALTIATMKSP--NDKVASMTVEF  289 (861)
T ss_dssp             CHHHHTSHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHHHGGGCHHHHHHTHHHHHHHHTTCS--SHHHHHHHHHH
T ss_pred             HhHhHHhhhhhhHHHHhHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc--cHHHHHHHHHH
Confidence            55433211 1223567788888988899999999999999887766544444333333444444544  55677777777


Q ss_pred             HHHHhh
Q 015951          279 VGDLAK  284 (397)
Q Consensus       279 L~~L~~  284 (397)
                      +..++.
T Consensus       290 l~~l~~  295 (861)
T d2bpta1         290 WSTICE  295 (861)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            666543

>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.75  E-value=0.044  Score=54.84  Aligned_cols=158  Identities=10%  Similarity=0.081  Sum_probs=111.9

Q ss_pred             HHHHHHHHHHhhCCCCCHHHHHHHHHHHHhccCCCCchhHHHhc-CCHHHHHHhcCC--CCHHHHHHHHHHHHHHhcCCh
Q 015951          125 AQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKL-GGLSVLVGQLNH--PDTDIRKISAWILGKASQNNP  201 (397)
Q Consensus       125 ~~lmk~~i~~L~~~~~s~e~k~~AL~~L~~Lve~iDnA~~~~~l-GGl~~Li~lL~s--~~~~ir~~Aa~vLg~~aqNNp  201 (397)
                      .+++..+++.+.+++.+...+..++..|.++++.++........ ..++.++..+.+  ++.++|..|..++.+.....+
T Consensus       127 peli~~L~~~l~~~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~il~~i~~~l~~~~~~~~v~~~a~~~l~~~~~~~~  206 (876)
T d1qgra_         127 PELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTK  206 (876)
T ss_dssp             TTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCH
T ss_pred             HHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHcCcCccHHHHHHHHHHHHHHHHHhh
Confidence            36788888888888878788889999999988776643221111 357778887754  457899999999998887654


Q ss_pred             HHHHHHHH-cCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHH
Q 015951          202 LVQKQVLE-LGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVG  280 (397)
Q Consensus       202 ~~Q~~vl~-~g~lp~Ll~LL~s~~~~v~~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klr~kA~~lL~  280 (397)
                      ........ .-.++.+..++.+++..++..++.++..++..++.....+........+...+.+.  ...++..+...+.
T Consensus       207 ~~~~~~~~~~~i~~~l~~~~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~--~~~~~~~~~~~~~  284 (876)
T d1qgra_         207 ANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSD--IDEVALQGIEFWS  284 (876)
T ss_dssp             HHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSGGGCHHHHTTTHHHHHHHHHTCS--SHHHHHHHHHHHH
T ss_pred             hhhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhccc--cHHHHHHHHHHHH
Confidence            33221111 12456677778888888999999999999998877666666555666777777765  3456777776666


Q ss_pred             HHhh
Q 015951          281 DLAK  284 (397)
Q Consensus       281 ~L~~  284 (397)
                      .++.
T Consensus       285 ~i~~  288 (876)
T d1qgra_         285 NVCD  288 (876)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            6654

>d1lsha1 a.118.4.1 (A:285-620) Lipovitellin-phosvitin complex, superhelical domain {Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Lipovitellin-phosvitin complex, superhelical domain
family: Lipovitellin-phosvitin complex, superhelical domain
domain: Lipovitellin-phosvitin complex, superhelical domain
species: Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]

Probab=95.59  E-value=0.35  Score=44.71  Aligned_cols=79  Identities=15%  Similarity=0.099  Sum_probs=47.7

Q ss_pred             HHHHHHHHHhcCCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhccCCCCchhHHHhcCCHHHHHHhcCC----CCHH
Q 015951          109 QMEIKELMEKLKTPSDAQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNH----PDTD  184 (397)
Q Consensus       109 ~~~L~ea~~~~~~~~d~~lmk~~i~~L~~~~~s~e~k~~AL~~L~~Lve~iDnA~~~~~lGGl~~Li~lL~s----~~~~  184 (397)
                      |.|+-+++-..|.+.-.   +-..+.+.+...+..+....+..+....++..  .      .+..+..++.+    .++.
T Consensus        74 r~~~lDal~~~GT~~a~---~~i~~~I~~~~ls~~ea~~~l~~l~~~~~Pt~--~------~l~~~~~l~~~~~~~~~~~  142 (336)
T d1lsha1          74 RRWILDAVPAMATSEAL---LFLKRTLASEQLTSAEATQIVASTLSNQQATR--E------SLSYARELLNTSFIRNRPI  142 (336)
T ss_dssp             HHHHHHHHHHHCSHHHH---HHHHHHHHTTCSCHHHHHHHHHHHHHTCCCCH--H------HHHHHHHHHTCHHHHTCHH
T ss_pred             HHHHHHHHHHhCCHHHH---HHHHHHHHcCCCCHHHHHHHHHHHhccCCCCH--H------HHHHHHHHHcCcccccchh
Confidence            56777777766644333   44445555677777766667777765554221  1      23334455554    4677


Q ss_pred             HHHHHHHHHHHHhc
Q 015951          185 IRKISAWILGKASQ  198 (397)
Q Consensus       185 ir~~Aa~vLg~~aq  198 (397)
                      ++..+.-.+|+++.
T Consensus       143 l~~~a~La~gslv~  156 (336)
T d1lsha1         143 LRKTAVLGYGSLVF  156 (336)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence            88888888877764

>d1ho8a_ a.118.1.9 (A:) Regulatory subunit H of the V-type ATPase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Regulatory subunit H of the V-type ATPase
domain: Regulatory subunit H of the V-type ATPase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.47  E-value=0.0025  Score=62.74  Aligned_cols=90  Identities=18%  Similarity=0.163  Sum_probs=69.2

Q ss_pred             HHHHHHHHhcCCCCHHHHHHHHHHHhhC----C----CCCHHHHHHHHHHHHhccCCCCchh-HHHhcCCHHHHHHhcCC
Q 015951          110 MEIKELMEKLKTPSDAQLIQIAIDDLNN----S----TLSLEDSQRALQELLILVEPIDNAN-DLSKLGGLSVLVGQLNH  180 (397)
Q Consensus       110 ~~L~ea~~~~~~~~d~~lmk~~i~~L~~----~----~~s~e~k~~AL~~L~~Lve~iDnA~-~~~~lGGl~~Li~lL~s  180 (397)
                      +|-+|-...|. .++.+++|.++++|..    .    +.++.....|+.++-++|...-+.+ .+.++||=..++++++|
T Consensus       377 ~FW~EN~~kf~-e~~~~llk~L~~lL~~~~~~~~~~~s~D~~~lAVAc~DiGefvr~~P~gr~il~~lg~K~~vM~Lm~h  455 (477)
T d1ho8a_         377 GFWSDNIDEFK-KDNYKIFRQLIELLQAKVRNGDVNAKQEKIIIQVALNDITHVVELLPESIDVLDKTGGKADIMELLNH  455 (477)
T ss_dssp             HHHHHHSGGGS-SGGGHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHSHHHHHHHHTSC
T ss_pred             hHHHHHHHhhc-ccchHHHHHHHHHHhhcccccccccCCCcceeehhhhhHHHHHHHCcchhHHHHHcCcHHHHHHHhcC
Confidence            34555555554 5789999999999962    2    2233445678999999997766555 57778998889999999


Q ss_pred             CCHHHHHHHHHHHHHHhcCC
Q 015951          181 PDTDIRKISAWILGKASQNN  200 (397)
Q Consensus       181 ~~~~ir~~Aa~vLg~~aqNN  200 (397)
                      ++++||..|..|++.+..+|
T Consensus       456 ~d~~Vr~eAL~avQklm~~n  475 (477)
T d1ho8a_         456 SDSRVKYEALKATQAIIGYT  475 (477)
T ss_dssp             SSHHHHHHHHHHHHHHHHHS
T ss_pred             CCHHHHHHHHHHHHHHHHhc
Confidence            99999999999999887544

>d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Leucine-rich repeat variant
domain: Leucine-rich repeat variant
species: Azotobacter vinelandii [TaxId: 354]

Probab=95.28  E-value=0.0021  Score=57.72  Aligned_cols=105  Identities=14%  Similarity=0.147  Sum_probs=51.2

Q ss_pred             HHHHHHhcCCCCHHHHHHHHHHHHH-----Hh-cCChHHHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHH-----HHh
Q 015951          171 LSVLVGQLNHPDTDIRKISAWILGK-----AS-QNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVS-----SLI  239 (397)
Q Consensus       171 l~~Li~lL~s~~~~ir~~Aa~vLg~-----~a-qNNp~~Q~~vl~~g~lp~Ll~LL~s~~~~v~~kAl~ALS-----~Li  239 (397)
                      +..|+.+++.+++.||..|+..|+.     +. -.++.++..+...=..+.|..++.+++..||..+..+++     .++
T Consensus        68 ~~~L~~Ll~D~d~~VR~~AA~~Lp~~~L~~L~~D~d~~VR~~aa~~l~~~~L~~Ll~D~d~~VR~~aa~~~~~~~L~~L~  147 (233)
T d1lrva_          68 VEALTPLIRDSDEVVRRAVAYRLPREQLSALMFDEDREVRITVADRLPLEQLEQMAADRDYLVRAYVVQRIPPGRLFRFM  147 (233)
T ss_dssp             GGGGGGGTTCSSHHHHHHHHTTSCSGGGGGTTTCSCHHHHHHHHHHSCTGGGGGGTTCSSHHHHHHHHHHSCGGGGGGTT
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHcCHHHHHHHhcCCChhHHHHHHhccCHHHHHHHhcCCCHHHHHHHHhccchhHHHHHh
Confidence            3345556666666666666654431     11 123444444444334455666666666666665544321     122


Q ss_pred             cC-ChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHH
Q 015951          240 RN-NLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVS  277 (397)
Q Consensus       240 R~-~~~~~~~f~~~gGi~~L~~lL~s~~~d~klr~kA~~  277 (397)
                      .+ ++.....+...-|.+.|..+++++  +..+|..++.
T Consensus       148 ~D~d~~VR~~aA~~~~~~~L~~l~~D~--d~~VR~~aa~  184 (233)
T d1lrva_         148 RDEDRQVRKLVAKRLPEESLGLMTQDP--EPEVRRIVAS  184 (233)
T ss_dssp             TCSCHHHHHHHHHHSCGGGGGGSTTCS--SHHHHHHHHH
T ss_pred             cCCCHHHHHHHHHhcCHHHHHHHccCC--CHHHHHHHHH
Confidence            22 222223333334555666666655  4456665554

>d2bnxa1 a.118.1.23 (A:133-475) Diaphanous protein homolog 1, Diap1 (Dia1, DRF1) {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Diap1 N-terninal region-like
domain: Diaphanous protein homolog 1, Diap1 (Dia1, DRF1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.08  E-value=0.48  Score=43.91  Aligned_cols=169  Identities=15%  Similarity=0.087  Sum_probs=114.6

Q ss_pred             HHHHHHHHhcc--CCCCchhHHHhcCCHHHHHHhcCC-----------CCHHHHHHHHHHHHHHhcCChHHHHHHHHcCc
Q 015951          146 QRALQELLILV--EPIDNANDLSKLGGLSVLVGQLNH-----------PDTDIRKISAWILGKASQNNPLVQKQVLELGA  212 (397)
Q Consensus       146 ~~AL~~L~~Lv--e~iDnA~~~~~lGGl~~Li~lL~s-----------~~~~ir~~Aa~vLg~~aqNNp~~Q~~vl~~g~  212 (397)
                      ..-|+.|.--+  ++++.-..| ..+|+..|+.+|..           .++.+.-....||..+..+.+..+..+-..++
T Consensus        21 ~~~L~sL~v~Lrt~~~sWv~~F-~~~G~~~L~~~L~~l~~~~~~~~~~~d~~~e~e~l~CLkalmn~~~G~~~vl~~~~~   99 (343)
T d2bnxa1          21 LSCLESLRVSLNNNPVSWVQTF-GAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEG   99 (343)
T ss_dssp             HHHHHHHHHHHHHSCHHHHHHH-HHHHHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHHHHTSSHHHHHHHHHSSSH
T ss_pred             HHHHHHHHHHHhcCCchHHHHH-HhccHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHhccHHHHHHHHcChHH
Confidence            33455543322  567777888 57899999887731           12568889999999999665555665666788


Q ss_pred             HHHHHHhhcCCCHHHHHHHHHHHHHHhcC------ChhcHHHH------HhcCcHHHHHHhhcCCCccHHHHHHHHHHHH
Q 015951          213 LSKLMKMVKSSFVEEAVKALYTVSSLIRN------NLAGQEMF------YVEAGDLMLQDILGNSSFEIRLHRKAVSLVG  280 (397)
Q Consensus       213 lp~Ll~LL~s~~~~v~~kAl~ALS~LiR~------~~~~~~~f------~~~gGi~~L~~lL~s~~~d~klr~kA~~lL~  280 (397)
                      +..|...+.++...++.-|+--|+.++--      ++...++|      .+.+-+..++..|++.. +..++..++.+|.
T Consensus       100 i~~l~~~L~s~~~~tr~~a~elL~~lc~~~~~~~g~~~vL~Al~~~~~~~e~~RF~~lv~~l~~~~-~~ey~~a~m~lIN  178 (343)
T d2bnxa1         100 ILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGT-SIALKVGCLQLIN  178 (343)
T ss_dssp             HHHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHHTSTTS-CHHHHHHHHHHHH
T ss_pred             HHHHHHccCCCchHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHhcCCCcHHHHHHHHhccc-cHHHHHHHHHHHH
Confidence            99999999998888888888877776532      22222222      23456788888888653 4568889999999


Q ss_pred             HHhhchhccCCCC------cchhHHhCCcHHHHHHhccCCChHHHHH
Q 015951          281 DLAKCQLENMHKV------EPPLFRDRFFLKSVVDLTASADLDLQEK  321 (397)
Q Consensus       281 ~L~~~~l~~~~~~------~~~~l~~~g~v~~Lv~lL~~~d~dv~E~  321 (397)
                      .|+.+     .++      .+..|...|+.+.+-.+=...++++..+
T Consensus       179 ~li~~-----~~dl~~R~~lR~E~~~~Gl~~il~~l~~~~~~~L~~Q  220 (343)
T d2bnxa1         179 ALITP-----AEELDFRVHIRSELMRLGLHQVLQELREIENEDMKVQ  220 (343)
T ss_dssp             HHHTT-----CSCHHHHHHHHHHHHHTTHHHHHHHHTTCCCHHHHHH
T ss_pred             HHHcC-----cccHHHHHHHHHHHHHCChHHHHHHHHccCChHHHHH
Confidence            99863     332      3556778898877666544445444443

>d1upka_ a.118.1.15 (A:) Mo25 protein {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Mo25 protein
domain: Mo25 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.99  E-value=0.48  Score=43.71  Aligned_cols=149  Identities=15%  Similarity=0.123  Sum_probs=104.8

Q ss_pred             HHHHHHHHHHHHHHhcCChHHHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHHHhcC---cHHHHH
Q 015951          183 TDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEA---GDLMLQ  259 (397)
Q Consensus       183 ~~ir~~Aa~vLg~~aqNNp~~Q~~vl~~g~lp~Ll~LL~s~~~~v~~kAl~ALS~LiR~~~~~~~~f~~~g---Gi~~L~  259 (397)
                      +++-..+-.+|..++. ++..-..++....+..+.+.+..++=++..-|...+-.++..|+.....|+..+   =+....
T Consensus       128 ~eiAl~~G~mLREcik-~e~lak~iL~s~~f~~fF~yv~~~~FdiasDAf~TfkelLt~hk~~~aefl~~Nyd~Ff~~~~  206 (330)
T d1upka_         128 PEIALNCGIMLRECIR-HEPLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYE  206 (330)
T ss_dssp             TTTHHHHHHHHHHHHT-SHHHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHH
T ss_pred             cchhhhhhHHHHHHHh-hHHHHHHHHccHHHHHHHHHHcCCchHHHHHHHHHHHHHHHhCHHHHHHHHHHhHHHHHHHHH
Confidence            3333344444444443 344556666667777777777777777888888888888888888777887665   344556


Q ss_pred             HhhcCCCccHHHHHHHHHHHHHHhhchhccCCCCc-chhHHhCCcHHHHHHhccCCChHHHHHHHHHHHHHhcCChHHH
Q 015951          260 DILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVE-PPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLRTTEA  337 (397)
Q Consensus       260 ~lL~s~~~d~klr~kA~~lL~~L~~~~l~~~~~~~-~~~l~~~g~v~~Lv~lL~~~d~dv~E~aL~aL~~L~~~~~~~r  337 (397)
                      .+|.++  +.=+|+.++-+|+.+....   .+... ...+.+..-++.++.+|++....+|-.|-....-++..+...+
T Consensus       207 ~LL~s~--NYVtrRqSlKLLgelLldr---~N~~vm~~Yvs~~~nLkl~M~LLrd~sk~Iq~EAFhVFKvFVANpnKp~  280 (330)
T d1upka_         207 KLLHSE--NYVTKRQSLKLLGELLLDR---HNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVANPNKTQ  280 (330)
T ss_dssp             HHTTCS--SHHHHHHHHHHHHHHHHSG---GGHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHCSSCCH
T ss_pred             HHhcCC--chHHHHHHHHHHHHHHhhh---hHHHHHHHHhCCHHHHHHHHHHhcCchhhHHHHhhhHhhhhhcCCCCCH
Confidence            788876  4558999999999998631   11111 2234455678889999999999999999999999998865433

>d2bnxa1 a.118.1.23 (A:133-475) Diaphanous protein homolog 1, Diap1 (Dia1, DRF1) {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Diap1 N-terninal region-like
domain: Diaphanous protein homolog 1, Diap1 (Dia1, DRF1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.76  E-value=1.7  Score=40.03  Aligned_cols=156  Identities=19%  Similarity=0.214  Sum_probs=100.1

Q ss_pred             cCChHHHHHHHHcCcHHHHHHhhc----CC----C---HHHHHHHHHHHHHHhcCChhcHHHHHh-cCcHHHHHHhhcCC
Q 015951          198 QNNPLVQKQVLELGALSKLMKMVK----SS----F---VEEAVKALYTVSSLIRNNLAGQEMFYV-EAGDLMLQDILGNS  265 (397)
Q Consensus       198 qNNp~~Q~~vl~~g~lp~Ll~LL~----s~----~---~~v~~kAl~ALS~LiR~~~~~~~~f~~-~gGi~~L~~lL~s~  265 (397)
                      .++|-....-+..+|+..|+.+|.    ..    .   ......++.+|-++.. +..+...++. .+++..|..+|.++
T Consensus        32 rt~~~sWv~~F~~~G~~~L~~~L~~l~~~~~~~~~~~d~~~e~e~l~CLkalmn-~~~G~~~vl~~~~~i~~l~~~L~s~  110 (343)
T d2bnxa1          32 NNNPVSWVQTFGAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMN-NKFGIKTMLETEEGILLLVRAMDPA  110 (343)
T ss_dssp             HHSCHHHHHHHHHHHHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHHHHTS-SHHHHHHHHHSSSHHHHHHHTCCTT
T ss_pred             hcCCchHHHHHHhccHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHhc-cHHHHHHHHcChHHHHHHHHccCCC
Confidence            344533222225678888888773    11    1   2345577888888865 4555555554 57899999999886


Q ss_pred             CccHHHHHHHHHHHHHHhhchh-ccCCCCcc------hhHHhCCcHHHHHHhccCC-ChHHHHHHHHHHHHHhcCChH--
Q 015951          266 SFEIRLHRKAVSLVGDLAKCQL-ENMHKVEP------PLFRDRFFLKSVVDLTASA-DLDLQEKALAAIKNLLQLRTT--  335 (397)
Q Consensus       266 ~~d~klr~kA~~lL~~L~~~~l-~~~~~~~~------~~l~~~g~v~~Lv~lL~~~-d~dv~E~aL~aL~~L~~~~~~--  335 (397)
                        ..+++.-|+-+|+.+|.-.. +.+++...      ....+.+-...+++.++.. +.+.+-.++..+-.+....+.  
T Consensus       111 --~~~tr~~a~elL~~lc~~~~~~~g~~~vL~Al~~~~~~~e~~RF~~lv~~l~~~~~~ey~~a~m~lIN~li~~~~dl~  188 (343)
T d2bnxa1         111 --VPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELD  188 (343)
T ss_dssp             --SHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHHTSTTSCHHHHHHHHHHHHHHHTTCSCHH
T ss_pred             --chHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHhcCCCcHHHHHHHHhccccHHHHHHHHHHHHHHHcCcccHH
Confidence              67789999999999985210 00011111      1223445556777777665 688998888888888877554  


Q ss_pred             ----HHHHHHhcCChHHHHHHHHHHh
Q 015951          336 ----EALVLKDFCGLDTALERLRQQL  357 (397)
Q Consensus       336 ----~r~~~~~~~gL~~~L~~Lr~~~  357 (397)
                          .|..|. .+||...+..|+.-.
T Consensus       189 ~R~~lR~E~~-~~Gl~~il~~l~~~~  213 (343)
T d2bnxa1         189 FRVHIRSELM-RLGLHQVLQELREIE  213 (343)
T ss_dssp             HHHHHHHHHH-HTTHHHHHHHHTTCC
T ss_pred             HHHHHHHHHH-HCChHHHHHHHHccC
Confidence                233455 689999999887643

>d1mhqa_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ENTH/VHS domain
family: VHS domain
domain: ADP-ribosylation factor binding protein Gga2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.15  E-value=0.18  Score=41.21  Aligned_cols=107  Identities=12%  Similarity=0.083  Sum_probs=75.6

Q ss_pred             HHHHHHhcCCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhccCCCCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHH
Q 015951          112 IKELMEKLKTPSDAQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAW  191 (397)
Q Consensus       112 L~ea~~~~~~~~d~~lmk~~i~~L~~~~~s~e~k~~AL~~L~~Lve~iDnA~~~~~lGGl~~Li~lL~s~~~~ir~~Aa~  191 (397)
                      +.+|-+......|.+.+.++.+.++...   +.-..|+..                      |..=|+++++.++-.|..
T Consensus         6 iekAT~~~~~~~dw~~il~icD~I~~~~---~~~k~a~ra----------------------l~krl~~~n~~~~l~aL~   60 (143)
T d1mhqa_           6 LNKATDPSMSEQDWSAIQNFCEQVNTDP---NGPTHAPWL----------------------LAHKIQSPQEKEALYALT   60 (143)
T ss_dssp             HHHHHCTTCSSCCHHHHHHHHHHHHHSS---HHHHHHHHH----------------------HHHHHTCSSHHHHHHHHH
T ss_pred             HHHHcCCCCCCcCHHHHHHHHHHHHcCC---CCHHHHHHH----------------------HHHHHcCCCHHHHHHHHH
Confidence            4444444344456777777777765432   111122322                      334468889999999999


Q ss_pred             HHHHHhcCC-hHHHHHHHHcCcHHHHHHhhcC------CCHHHHHHHHHHHHHHhcCCh
Q 015951          192 ILGKASQNN-PLVQKQVLELGALSKLMKMVKS------SFVEEAVKALYTVSSLIRNNL  243 (397)
Q Consensus       192 vLg~~aqNN-p~~Q~~vl~~g~lp~Ll~LL~s------~~~~v~~kAl~ALS~LiR~~~  243 (397)
                      ++-.+++|. +.++..+.....+..|++++..      .+..|+.+++..|-+....++
T Consensus        61 LLe~~vkNcG~~fh~evask~Fl~~l~~li~~k~~~~~~~~~Vk~kil~li~~Wa~~f~  119 (143)
T d1mhqa_          61 VLEMCMNHCGEKFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSWTVWFP  119 (143)
T ss_dssp             HHHHHHHHSCHHHHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHcCHHHHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHHHHHcC
Confidence            999999996 8999999988999999999973      346799998888877665554

>d1dvpa1 a.118.9.2 (A:1-145) Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ENTH/VHS domain
family: VHS domain
domain: Hrs
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=92.95  E-value=0.27  Score=39.98  Aligned_cols=106  Identities=16%  Similarity=0.206  Sum_probs=74.4

Q ss_pred             HHHHHHhcCCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhccCCCCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHH
Q 015951          112 IKELMEKLKTPSDAQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAW  191 (397)
Q Consensus       112 L~ea~~~~~~~~d~~lmk~~i~~L~~~~~s~e~k~~AL~~L~~Lve~iDnA~~~~~lGGl~~Li~lL~s~~~~ir~~Aa~  191 (397)
                      +.+|=+......|++.+.+..+.++.....+.   .|+                      ..|..-|+++++.++..|..
T Consensus        10 iekAT~~~~~~~dw~~il~icD~I~~~~~~~k---~a~----------------------ral~krl~~~n~~v~l~aL~   64 (145)
T d1dvpa1          10 LENATSHLRLEPDWPSILLICDEINQKDVTPK---NAF----------------------AAIKKKMNSPNPHSSCYSLL   64 (145)
T ss_dssp             HHHHHCTTCSSCCHHHHHHHHHHHHTTSSCHH---HHH----------------------HHHHHHHTCSSHHHHHHHHH
T ss_pred             HHHHcCcCCCCCCHHHHHHHHHHHhCCCccHH---HHH----------------------HHHHHHHcCCCHHHHHHHHH
Confidence            34444443445667777777777765433322   222                      22334567889999999999


Q ss_pred             HHHHHhcCC-hHHHHHHHHcCcHHHHHHhhcCC-CHHHHHHHHHHHHHHhcCC
Q 015951          192 ILGKASQNN-PLVQKQVLELGALSKLMKMVKSS-FVEEAVKALYTVSSLIRNN  242 (397)
Q Consensus       192 vLg~~aqNN-p~~Q~~vl~~g~lp~Ll~LL~s~-~~~v~~kAl~ALS~LiR~~  242 (397)
                      +|-.+++|. +..+..+...+.+..|.+++++. +..|+.+++..|-.-...+
T Consensus        65 LLd~~vkNcG~~f~~~i~s~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f  117 (145)
T d1dvpa1          65 VLESIVKNCGAPVHEEVFTKENCEMFSSFLESTPHENVRQKMLELVQTWAYAF  117 (145)
T ss_dssp             HHHHHHHHSHHHHHHHHSSHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHccchHHHHHHhhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHh
Confidence            999999996 66888888888999999999765 4678888887777655444

>d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Leucine-rich repeat variant
domain: Leucine-rich repeat variant
species: Azotobacter vinelandii [TaxId: 354]

Probab=92.63  E-value=0.024  Score=50.55  Aligned_cols=127  Identities=12%  Similarity=0.076  Sum_probs=67.0

Q ss_pred             HhcCCCCHHHHHHHHHH------HHHHhcCChHHHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHH
Q 015951          176 GQLNHPDTDIRKISAWI------LGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMF  249 (397)
Q Consensus       176 ~lL~s~~~~ir~~Aa~v------Lg~~aqNNp~~Q~~vl~~g~lp~Ll~LL~s~~~~v~~kAl~ALS~LiR~~~~~~~~f  249 (397)
                      .+|.+++.++|..|+.-      +.-+.-.+|.++..+...=+.+.|..++.+++..||..+..+++             
T Consensus        49 ~~l~~p~~e~Ra~Aa~~a~~~~L~~Ll~D~d~~VR~~AA~~Lp~~~L~~L~~D~d~~VR~~aa~~l~-------------  115 (233)
T d1lrva_          49 QYLADPFWERRAIAVRYSPVEALTPLIRDSDEVVRRAVAYRLPREQLSALMFDEDREVRITVADRLP-------------  115 (233)
T ss_dssp             GGTTCSSHHHHHHHHTTSCGGGGGGGTTCSSHHHHHHHHTTSCSGGGGGTTTCSCHHHHHHHHHHSC-------------
T ss_pred             HHhcCCcHHHHHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHcCHHHHHHHhcCCChhHHHHHHhccC-------------
Confidence            58899999999888862      22222345666666655433445666666666666655554432             


Q ss_pred             HhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchh----ccCCCCcchhHHhCCcHHHHHHhccCCChHHHHHHHHH
Q 015951          250 YVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQL----ENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAA  325 (397)
Q Consensus       250 ~~~gGi~~L~~lL~s~~~d~klr~kA~~lL~~L~~~~l----~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~dv~E~aL~a  325 (397)
                           .+.|..++.++  +..+|..++.-   +....+    ...++..+..+...-..+.+..+++.+++.++..++..
T Consensus       116 -----~~~L~~Ll~D~--d~~VR~~aa~~---~~~~~L~~L~~D~d~~VR~~aA~~~~~~~L~~l~~D~d~~VR~~aa~~  185 (233)
T d1lrva_         116 -----LEQLEQMAADR--DYLVRAYVVQR---IPPGRLFRFMRDEDRQVRKLVAKRLPEESLGLMTQDPEPEVRRIVASR  185 (233)
T ss_dssp             -----TGGGGGGTTCS--SHHHHHHHHHH---SCGGGGGGTTTCSCHHHHHHHHHHSCGGGGGGSTTCSSHHHHHHHHHH
T ss_pred             -----HHHHHHHhcCC--CHHHHHHHHhc---cchhHHHHHhcCCCHHHHHHHHHhcCHHHHHHHccCCCHHHHHHHHHh
Confidence                 23455555554  44455554432   111100    01122233333332234455666677777777777754

>d1ujka_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ENTH/VHS domain
family: VHS domain
domain: ADP-ribosylation factor binding protein Gga1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.30  E-value=0.41  Score=38.97  Aligned_cols=108  Identities=17%  Similarity=0.084  Sum_probs=77.6

Q ss_pred             HHHHHHHhcCCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhccCCCCchhHHHhcCCHHHHHHhcCCCCHHHHHHHH
Q 015951          111 EIKELMEKLKTPSDAQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISA  190 (397)
Q Consensus       111 ~L~ea~~~~~~~~d~~lmk~~i~~L~~~~~s~e~k~~AL~~L~~Lve~iDnA~~~~~lGGl~~Li~lL~s~~~~ir~~Aa  190 (397)
                      ++.+|=+......|.+.+-++.+.++.....+   ..|+.                      .|..=|.+.++.++-.|.
T Consensus        12 ~iekAT~~~l~~~dw~~ileicD~I~~~~~~~---k~a~r----------------------~l~krl~~~~~~~~l~aL   66 (145)
T d1ujka_          12 RINRATNPLNKELDWASINGFCEQLNEDFEGP---PLATR----------------------LLAHKIQSPQEWEAIQAL   66 (145)
T ss_dssp             HHHHHTCTTCSSCCHHHHHHHHHHHTSSTTHH---HHHHH----------------------HHHHHHTCSSHHHHHHHH
T ss_pred             HHHHHcCCCCCCcCHHHHHHHHHHHhCCCccH---HHHHH----------------------HHHHHHcCCCHHHHHHHH
Confidence            34455444445566777777777776532111   12322                      234446888999999999


Q ss_pred             HHHHHHhcCC-hHHHHHHHHcCcHHHHHHhhcC------CCHHHHHHHHHHHHHHhcCCh
Q 015951          191 WILGKASQNN-PLVQKQVLELGALSKLMKMVKS------SFVEEAVKALYTVSSLIRNNL  243 (397)
Q Consensus       191 ~vLg~~aqNN-p~~Q~~vl~~g~lp~Ll~LL~s------~~~~v~~kAl~ALS~LiR~~~  243 (397)
                      .+|-.+++|. +.++..+...+.+..|+++++.      .+..|+.|.+..|-.-...+|
T Consensus        67 ~LLe~~vkNCG~~f~~evas~~Fl~~L~kli~~k~~~~~~~~~Vk~kil~li~~W~~~fp  126 (145)
T d1ujka_          67 TVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWTVGLP  126 (145)
T ss_dssp             HHHHHHHTSCCHHHHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHHHhHHHHHHHhhHHHHHHHHHHHhhccCCCCCcHHHHHHHHHHHHHHHHHCC
Confidence            9999999995 9999999999999999999963      346789999888877666554

>d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Exportin Cse1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=89.30  E-value=0.68  Score=46.79  Aligned_cols=136  Identities=11%  Similarity=0.098  Sum_probs=97.2

Q ss_pred             HHHHHHhc-CCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCcHHHHHHhhcCCC--HHHHHHHHHHHHHHhcCC-----
Q 015951          171 LSVLVGQL-NHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSF--VEEAVKALYTVSSLIRNN-----  242 (397)
Q Consensus       171 l~~Li~lL-~s~~~~ir~~Aa~vLg~~aqNNp~~Q~~vl~~g~lp~Ll~LL~s~~--~~v~~kAl~ALS~LiR~~-----  242 (397)
                      ++.+.++| .+.+|+.|..|-.-|..+. ++|         |.+..|++++.+.+  ..+|..|+-.+-+.++.+     
T Consensus         4 ~~~l~~ll~~s~~~~~~k~Ae~~L~~~~-~~p---------~f~~~L~~i~~~~~~~~~iR~~A~i~lKn~i~~~W~~~~   73 (959)
T d1wa5c_           4 LETVAKFLAESVIASTAKTSERNLRQLE-TQD---------GFGLTLLHVIASTNLPLSTRLAGALFFKNFIKRKWVDEN   73 (959)
T ss_dssp             HHHHHHHHHHTTSGGGHHHHHHHHHHHH-TST---------THHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHHSBCSS
T ss_pred             HHHHHHHHHHCCChHHHHHHHHHHHHHH-cCC---------CHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhccccc
Confidence            45666776 5678889999999998874 567         78889999987664  468888888888877642     


Q ss_pred             -----hhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHHhCCcHHHHHHhccCCChH
Q 015951          243 -----LAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLD  317 (397)
Q Consensus       243 -----~~~~~~f~~~gGi~~L~~lL~s~~~d~klr~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~d  317 (397)
                           ++..+..++    ..|..+|.++  +..+|...+.+++.++...    .|+..     .++++.+.+.++++|+.
T Consensus        74 ~~~~i~~e~k~~Ik----~~ll~~l~~~--~~~ir~~l~~~i~~I~~~d----~p~~W-----p~ll~~l~~~l~s~~~~  138 (959)
T d1wa5c_          74 GNHLLPANNVELIK----KEIVPLMISL--PNNLQVQIGEAISSIADSD----FPDRW-----PTLLSDLASRLSNDDMV  138 (959)
T ss_dssp             SCBSSCHHHHHHHH----HHHHHHHHHS--CHHHHHHHHHHHHHHHHHH----STTTC-----TTHHHHHHTTCCSSCTT
T ss_pred             ccCCCCHHHHHHHH----HHHHHHHhCC--cHHHHHHHHHHHHHHHHHh----Ccccc-----HHHHHHHHHHhCCCCHH
Confidence                 112233333    3344445444  4568889999999988631    23222     35788889999999999


Q ss_pred             HHHHHHHHHHHHhc
Q 015951          318 LQEKALAAIKNLLQ  331 (397)
Q Consensus       318 v~E~aL~aL~~L~~  331 (397)
                      .+..++.+|..+..
T Consensus       139 ~~~~~L~~l~~i~k  152 (959)
T d1wa5c_         139 TNKGVLTVAHSIFK  152 (959)
T ss_dssp             HHHHHHHHHHHHHG
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999999998875

>d1juqa_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga3 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ENTH/VHS domain
family: VHS domain
domain: ADP-ribosylation factor binding protein Gga3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.83  E-value=1.1  Score=36.57  Aligned_cols=70  Identities=16%  Similarity=0.093  Sum_probs=57.2

Q ss_pred             HHHhcCCCCHHHHHHHHHHHHHHhcCC-hHHHHHHHHcCcHHHHHHhhcCC------CHHHHHHHHHHHHHHhcCCh
Q 015951          174 LVGQLNHPDTDIRKISAWILGKASQNN-PLVQKQVLELGALSKLMKMVKSS------FVEEAVKALYTVSSLIRNNL  243 (397)
Q Consensus       174 Li~lL~s~~~~ir~~Aa~vLg~~aqNN-p~~Q~~vl~~g~lp~Ll~LL~s~------~~~v~~kAl~ALS~LiR~~~  243 (397)
                      |..=|++.++.++.+|..+|-.+++|. +..+..+.....+..|++++...      +..|+.+.+.-|-+-...+|
T Consensus        44 i~krl~~~~~~~~l~aL~LLe~~vkNCG~~F~~evask~Fl~~l~kli~~k~~~~~~~~~Vk~kil~ll~~Wa~~f~  120 (151)
T d1juqa_          44 LAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTKVIELLYSWTMALP  120 (151)
T ss_dssp             HHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHHHHHHHHCT
T ss_pred             HHHHHcCCCHHHHHHHHHHHHHHHHHccHHHHHHHhhHHHHHHHHHHHcccCCCCcccHHHHHHHHHHHHHHHHHcc
Confidence            344567889999999999999999996 77888888888999999999742      45789988888887766554

>d1upka_ a.118.1.15 (A:) Mo25 protein {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Mo25 protein
domain: Mo25 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.92  E-value=12  Score=33.87  Aligned_cols=199  Identities=11%  Similarity=0.081  Sum_probs=129.2

Q ss_pred             HHHHHHHHHhhCCCCCHHHHHHHHHHHHhccCCCCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHHHH
Q 015951          126 QLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQK  205 (397)
Q Consensus       126 ~lmk~~i~~L~~~~~s~e~k~~AL~~L~~Lve~iDnA~~~~~lGGl~~Li~lL~s~~~~ir~~Aa~vLg~~aqNNp~~Q~  205 (397)
                      +++-.++.-+.+++    --..+-.-|.+|+..-.-|.-+.....+..+.++...++=+|-.-|...+..+-..++.+-.
T Consensus       116 eil~~L~~gye~~e----iAl~~G~mLREcik~e~lak~iL~s~~f~~fF~yv~~~~FdiasDAf~TfkelLt~hk~~~a  191 (330)
T d1upka_         116 NILFMLLKGYESPE----IALNCGIMLRECIRHEPLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSA  191 (330)
T ss_dssp             HHHHHHHHGGGSTT----THHHHHHHHHHHHTSHHHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHH
T ss_pred             HHHHHHHhhcCCcc----hhhhhhHHHHHHHhhHHHHHHHHccHHHHHHHHHHcCCchHHHHHHHHHHHHHHHhCHHHHH
Confidence            34444444444442    22333444555665555566666667888888999999999999999999999999988777


Q ss_pred             HHHHcC---cHHHHHHhhcCCCHHHHHHHHHHHHHHh--cCChhcHHHHHhc-CcHHHHHHhhcCCCccHHHHHHHHHHH
Q 015951          206 QVLELG---ALSKLMKMVKSSFVEEAVKALYTVSSLI--RNNLAGQEMFYVE-AGDLMLQDILGNSSFEIRLHRKAVSLV  279 (397)
Q Consensus       206 ~vl~~g---~lp~Ll~LL~s~~~~v~~kAl~ALS~Li--R~~~~~~~~f~~~-gGi~~L~~lL~s~~~d~klr~kA~~lL  279 (397)
                      .++..+   .+...-+||.+++=-.|+.++--|+.++  |.|......++.. .-+.+++.+|++++  ..+|..|....
T Consensus       192 efl~~Nyd~Ff~~~~~LL~s~NYVtrRqSlKLLgelLldr~N~~vm~~Yvs~~~nLkl~M~LLrd~s--k~Iq~EAFhVF  269 (330)
T d1upka_         192 EFLEQHYDRFFSEYEKLLHSENYVTKRQSLKLLGELLLDRHNFTIMTKYISKPENLKLMMNLLRDKS--RNIQFEAFHVF  269 (330)
T ss_dssp             HHHHHTHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCSC--HHHHHHHHHHH
T ss_pred             HHHHHhHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHhcCch--hhHHHHhhhHh
Confidence            777665   4677788999888778999999999988  4454444555543 46889999999874  45788998888


Q ss_pred             HHHhhchhccCCCCcchhHHh--CCcHHHHHHhccC--CChHHHHHHHHHHHHHhcC
Q 015951          280 GDLAKCQLENMHKVEPPLFRD--RFFLKSVVDLTAS--ADLDLQEKALAAIKNLLQL  332 (397)
Q Consensus       280 ~~L~~~~l~~~~~~~~~~l~~--~g~v~~Lv~lL~~--~d~dv~E~aL~aL~~L~~~  332 (397)
                      .=++.++  +..+.....+..  ..++..+-+....  +|..+.+-=...+..+...
T Consensus       270 KvFVANp--nKp~~I~~IL~~Nr~kLl~fl~~f~~d~~~DeqF~~EK~~lI~~I~~L  324 (330)
T d1upka_         270 KVFVANP--NKTQPILDILLKNQAKLIEFLSKFQNDRTEDEQFNDEKTYLVKQIRDL  324 (330)
T ss_dssp             HHHHHCS--SCCHHHHHHHHHTHHHHHHHHHHTTTTC-CCSHHHHHHHHHHHHHHTC
T ss_pred             hhhhcCC--CCCHHHHHHHHHhHHHHHHHHHhCCCCCCchhhHHHHHHHHHHHHHhC
Confidence            8777532  111223333332  2444444444332  3444543333344444433

>d1mhqa_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ENTH/VHS domain
family: VHS domain
domain: ADP-ribosylation factor binding protein Gga2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.15  E-value=0.89  Score=36.73  Aligned_cols=92  Identities=8%  Similarity=0.078  Sum_probs=68.4

Q ss_pred             HHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHHhCCcHHHHH
Q 015951          229 VKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVV  308 (397)
Q Consensus       229 ~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klr~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv  308 (397)
                      ..++..|+-+++..+.+..     ..+..|..=++++  ++..+..|+.++-.++.    +.++.+...+.+..++..++
T Consensus        19 w~~il~icD~I~~~~~~~k-----~a~ral~krl~~~--n~~~~l~aL~LLe~~vk----NcG~~fh~evask~Fl~~l~   87 (143)
T d1mhqa_          19 WSAIQNFCEQVNTDPNGPT-----HAPWLLAHKIQSP--QEKEALYALTVLEMCMN----HCGEKFHSEVAKFRFLNELI   87 (143)
T ss_dssp             HHHHHHHHHHHHHSSHHHH-----HHHHHHHHHHTCS--SHHHHHHHHHHHHHHHH----HSCHHHHHHHTSHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCCCHH-----HHHHHHHHHHcCC--CHHHHHHHHHHHHHHHH----HcCHHHHHHHhhHHHHHHHH
Confidence            4566667777765544322     2445566667776  56789999999999887    35677778888889999999


Q ss_pred             HhccC------CChHHHHHHHHHHHHHhc
Q 015951          309 DLTAS------ADLDLQEKALAAIKNLLQ  331 (397)
Q Consensus       309 ~lL~~------~d~dv~E~aL~aL~~L~~  331 (397)
                      .++..      .+..|+++++..|...+.
T Consensus        88 ~li~~k~~~~~~~~~Vk~kil~li~~Wa~  116 (143)
T d1mhqa_          88 KVLSPKYLGSWATGKVKGRVIEILFSWTV  116 (143)
T ss_dssp             HTTCCSTTSCCCCHHHHHHHHHHHHHHHH
T ss_pred             HHHccccCCCCCCHHHHHHHHHHHHHHHH
Confidence            99863      478899999998888874

>d1ujka_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ENTH/VHS domain
family: VHS domain
domain: ADP-ribosylation factor binding protein Gga1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.57  E-value=2.2  Score=34.37  Aligned_cols=108  Identities=10%  Similarity=0.131  Sum_probs=76.8

Q ss_pred             cHHHHHHhhcCCC-HHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccC
Q 015951          212 ALSKLMKMVKSSF-VEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENM  290 (397)
Q Consensus       212 ~lp~Ll~LL~s~~-~~v~~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klr~kA~~lL~~L~~~~l~~~  290 (397)
                      .+..++.-..++. .+.-..++-.|+-+++..+.....     ++..|..=|+++  ++.++..|+.++-.++.    +.
T Consensus         8 ~~e~~iekAT~~~l~~~dw~~ileicD~I~~~~~~~k~-----a~r~l~krl~~~--~~~~~l~aL~LLe~~vk----NC   76 (145)
T d1ujka_           8 TLEARINRATNPLNKELDWASINGFCEQLNEDFEGPPL-----ATRLLAHKIQSP--QEWEAIQALTVLETCMK----SC   76 (145)
T ss_dssp             SHHHHHHHHTCTTCSSCCHHHHHHHHHHHTSSTTHHHH-----HHHHHHHHHTCS--SHHHHHHHHHHHHHHHT----SC
T ss_pred             hHHHHHHHHcCCCCCCcCHHHHHHHHHHHhCCCccHHH-----HHHHHHHHHcCC--CHHHHHHHHHHHHHHHH----HH
Confidence            3444555444432 222346777888888876653332     455567777776  56789999999988886    46


Q ss_pred             CCCcchhHHhCCcHHHHHHhccC------CChHHHHHHHHHHHHHh
Q 015951          291 HKVEPPLFRDRFFLKSVVDLTAS------ADLDLQEKALAAIKNLL  330 (397)
Q Consensus       291 ~~~~~~~l~~~g~v~~Lv~lL~~------~d~dv~E~aL~aL~~L~  330 (397)
                      ++.+...+.+..|+..|+.++..      .+..|+++++..|..-+
T Consensus        77 G~~f~~evas~~Fl~~L~kli~~k~~~~~~~~~Vk~kil~li~~W~  122 (145)
T d1ujka_          77 GKRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWT  122 (145)
T ss_dssp             CHHHHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHhhHHHHHHHHHHHhhccCCCCCcHHHHHHHHHHHHHHH
Confidence            67788888899999999999863      47789999998887765

>d1dvpa1 a.118.9.2 (A:1-145) Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ENTH/VHS domain
family: VHS domain
domain: Hrs
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=80.11  E-value=1.7  Score=34.97  Aligned_cols=93  Identities=5%  Similarity=-0.004  Sum_probs=68.5

Q ss_pred             HHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHHhCCcHHHH
Q 015951          228 AVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSV  307 (397)
Q Consensus       228 ~~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klr~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~L  307 (397)
                      -..++-.|+-+++..+.+..     ..+..|..-++++  ++.++..|+.++-.++.+    .++.+...+.+..++..+
T Consensus        22 dw~~il~icD~I~~~~~~~k-----~a~ral~krl~~~--n~~v~l~aL~LLd~~vkN----cG~~f~~~i~s~~fl~~l   90 (145)
T d1dvpa1          22 DWPSILLICDEINQKDVTPK-----NAFAAIKKKMNSP--NPHSSCYSLLVLESIVKN----CGAPVHEEVFTKENCEMF   90 (145)
T ss_dssp             CHHHHHHHHHHHHTTSSCHH-----HHHHHHHHHHTCS--SHHHHHHHHHHHHHHHHH----SHHHHHHHHSSHHHHHHH
T ss_pred             CHHHHHHHHHHHhCCCccHH-----HHHHHHHHHHcCC--CHHHHHHHHHHHHHHHHc----cchHHHHHHhhHHHHHHH
Confidence            34567778888887655333     2456677778876  567899999999998863    455566667777888888


Q ss_pred             HHhccCC-ChHHHHHHHHHHHHHhc
Q 015951          308 VDLTASA-DLDLQEKALAAIKNLLQ  331 (397)
Q Consensus       308 v~lL~~~-d~dv~E~aL~aL~~L~~  331 (397)
                      ..++++. +..|+++++..+...+.
T Consensus        91 ~~l~~~~~~~~Vk~kil~li~~W~~  115 (145)
T d1dvpa1          91 SSFLESTPHENVRQKMLELVQTWAY  115 (145)
T ss_dssp             HHHHHHCSCHHHHHHHHHHHHHHHH
T ss_pred             HHHhcCCCCHHHHHHHHHHHHHHHH
Confidence            8887654 78899999988887764