Citrus Sinensis ID: 015984

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------
MESALASASAITDQRQKIEQYKHILSSVISSNDIVQAKKFIDHMLSDDVPLVVSRQLLQTFAQELGRLEPETQKEIANYTLAQIQPRVVSFEEQVLIIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVLNLQYKVCYARILDLKRKFLEAALRYYDISQIQKRQIGDETIDEEALEQALSAAVTCTILAAAGPQRSRVLATLYKDERCSKLKIYPILQKVYLERILRKPEIDAFAEELKPHQKALLPDNFTVLDRAMIEHNLLSASKLYTNISFEELGTLLGIAPQKAEKIASRMIFEDRMRGSIDQVEAVIHFEDDTEELQQWDQQIVGLCQALNDILDSMAKKGLPIPV
cHHHHHHHHHcccHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHccccccHHHHHHHHHHHHHHcHHcccHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHccccccHHHHHHHHHHHHHHHHHHccccccHHHHHHHHcccHHHHHHHHHHHHHcccEEEEEcccccEEEEccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccc
cHHHHHHHHHcccHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHccccEEEcHHHHHHHHHHHHccccHHHHHHHHHHHHHcccccEEHHHHHHHHHHHHHHHHHHcccHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHccHHHHcHHHHHHHHHHHHHHccHHHHHHHHHHHcHccccccccccHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHcccHHHHHHHHHHHHHcccEEEEEEccccEEEEcccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccc
MESALASASAITDQRQKIEQYKHILSSVISSNDIVQAKKFIDhmlsddvplVVSRQLLQTFAQELGRLEPETQKEIANYTLaqiqprvvsFEEQVLIIREKLADLYESEQQWSKAAQMLSgidldsgmrviddtfRLSKCVQIARLyledddavNAEAFINKASFLVSSSQQEVLNLQYKVCYARILDLKRKFLEAALRYYDISQiqkrqigdetIDEEALEQALSAAVTCTILAAAGPQRSRVLATLykdercsklkiyPILQKVYLERILRKPEIDAFAEELKphqkallpdnftVLDRAMIEHNLLSASKLYtnisfeelgtllgiapQKAEKIASRMIFEdrmrgsidqVEAVIHFEDDTEELQQWDQQIVGLCQALNDILDSMakkglpipv
MESALASASAITDQRQKIEQYKHILSSVISSNDIVQAKKFIDHMLSDDVPLVVSRQLLQTFAQELGRLEPETQKEIANYtlaqiqprvvSFEEQVLIIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVLNLQYKVCYARILDLKRKFLEAALRYYDISQIQKRQIGDETIDEEALEQALSAAVTCTILAAAGPQRSRVLAtlykdercsklkiypilqKVYLERILRKPEIDAFAEELKPHQKALLPDNFTVLDRAMIEHNLLSASKLYTNISFEELGTLLGIAPQKAEKIASRMIFEDRMRGSIDQVEAVIHFEDDTEELQQWDQQIVGLCQALNDILDsmakkglpipv
MESALASASAITDQRQKIEQYKHILSSVISSNDIVQAKKFIDHMLSDDVPLVVSRQLLQTFAQELGRLEPETQKEIANYTLAQIQPRVVSFEEQVLIIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVLNLQYKVCYARILDLKRKFLEAALRYYDISQIQKRQIGDETIDEEALEQALSAAVTCTILAAAGPQRSRVLATLYKDERCSKLKIYPILQKVYLERILRKPEIDAFAEELKPHQKALLPDNFTVLDRAMIEHNLLSASKLYTNISFEELGTLLGIAPQKAEKIASRMIFEDRMRGSIDQVEAVIHFEDDTEELQQWDQQIVGLCQALNDILDSMAKKGLPIPV
******************EQYKHILSSVISSNDIVQAKKFIDHMLSDDVPLVVSRQLLQTFAQELGRLEPETQKEIANYTLAQIQPRVVSFEEQVLIIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVLNLQYKVCYARILDLKRKFLEAALRYYDISQIQKRQIGDETIDEEALEQALSAAVTCTILAAAGPQRSRVLATLYKDERCSKLKIYPILQKVYLERILRKPEIDAFAEELKPHQKALLPDNFTVLDRAMIEHNLLSASKLYTNISFEELGTLLGIAPQKAEKIASRMIFEDRMRGSIDQVEAVIHFEDDTEELQQWDQQIVGLCQALNDILD***********
**SALA*************QYKHILSSVIS*NDIVQAKKFIDHMLSDDVPLVVSRQLLQTFAQELGRLEPETQKEIANYTLAQIQPRVVSFEEQVLIIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVLNLQYKVCYARILDLKRKFLEAALRYYDISQIQKRQIGDETIDEEALEQALSAAVTCTILAAAGP*********YKDERCSKLKIYPILQKVYLERILRKPEIDAFAEELKPHQKALLPDNFTVLDRAMIEHNLLSASKLYTNISFEELGTLLGIAPQKAEKIASRMIFEDRMRGSIDQVEAVIHFEDDTEELQQWDQQIVGLCQALNDILDSMAKKGLPI**
************DQRQKIEQYKHILSSVISSNDIVQAKKFIDHMLSDDVPLVVSRQLLQTFAQELGRLEPETQKEIANYTLAQIQPRVVSFEEQVLIIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVLNLQYKVCYARILDLKRKFLEAALRYYDISQIQKRQIGDETIDEEALEQALSAAVTCTILAAAGPQRSRVLATLYKDERCSKLKIYPILQKVYLERILRKPEIDAFAEELKPHQKALLPDNFTVLDRAMIEHNLLSASKLYTNISFEELGTLLGIAPQKAEKIASRMIFEDRMRGSIDQVEAVIHFEDDTEELQQWDQQIVGLCQALNDILDSMAKKGLPIPV
*****ASASAITDQRQKIEQYKHILSSVISSNDIVQAKKFIDHMLSDDVPLVVSRQLLQTFAQELGRLEPETQKEIANYTLAQIQPRVVSFEEQVLIIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVLNLQYKVCYARILDLKRKFLEAALRYYDISQIQKRQIGDETIDEEALEQALSAAVTCTILAAAGPQRSRVLATLYKDERCSKLKIYPILQKVYLERILRKPEIDAFAEELKPHQKALLPDNFTVLDRAMIEHNLLSASKLYTNISFEELGTLLGIAPQKAEKIASRMIFEDRMRGSIDQVEAVIHFEDDTEELQQWDQQIVGLCQALNDILDSMAKKGLPI**
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MESALASASAITDQRQKIEQYKHILSSVISSNDIVQAKKFIDHMLSDDVPLVVSRQLLQTFAQELGRLEPETQKEIANYTLAQIQPRVVSFEEQVLIIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVLNLQYKVCYARILDLKRKFLEAALRYYDISQIQKRQIGDETIDEEALEQALSAAVTCTILAAAGPQRSRVLATLYKDERCSKLKIYPILQKVYLERILRKPEIDAFAEELKPHQKALLPDNFTVLDRAMIEHNLLSASKLYTNISFEELGTLLGIAPQKAEKIASRMIFEDRMRGSIDQVEAVIHFEDDTEELQQWDQQIVGLCQALNDILDSMAKKGLPIPV
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query397 2.2.26 [Sep-21-2011]
Q8L5U0397 COP9 signalosome complex yes no 1.0 1.0 0.858 0.0
Q54B82393 COP9 signalosome complex yes no 0.962 0.972 0.489 1e-102
Q3SZA0406 COP9 signalosome complex yes no 0.914 0.894 0.521 1e-101
Q68FS2406 COP9 signalosome complex yes no 0.914 0.894 0.516 1e-101
A7Y521406 COP9 signalosome complex yes no 0.914 0.894 0.521 1e-101
Q4R5E6406 COP9 signalosome complex N/A no 0.914 0.894 0.521 1e-101
Q9BT78406 COP9 signalosome complex yes no 0.914 0.894 0.521 1e-101
O88544406 COP9 signalosome complex yes no 0.914 0.894 0.518 1e-101
Q5R648406 COP9 signalosome complex yes no 0.914 0.894 0.518 1e-101
Q6P0H6406 COP9 signalosome complex yes no 0.914 0.894 0.513 1e-101
>sp|Q8L5U0|CSN4_ARATH COP9 signalosome complex subunit 4 OS=Arabidopsis thaliana GN=CSN4 PE=1 SV=2 Back     alignment and function desciption
 Score =  704 bits (1818), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 341/397 (85%), Positives = 369/397 (92%)

Query: 1   MESALASASAITDQRQKIEQYKHILSSVISSNDIVQAKKFIDHMLSDDVPLVVSRQLLQT 60
           M+ AL +ASAI DQRQKIEQYK ILSSV+SSND++QA++FIDH+LSDDVPLVVSRQLLQ+
Sbjct: 1   MDEALTNASAIGDQRQKIEQYKLILSSVLSSNDLLQAQRFIDHILSDDVPLVVSRQLLQS 60

Query: 61  FAQELGRLEPETQKEIANYTLAQIQPRVVSFEEQVLIIREKLADLYESEQQWSKAAQMLS 120
           FAQELGRLEPETQKEIA +TL QIQPRVVSFEEQ L+IREKLA LYESEQ+WSKAAQMLS
Sbjct: 61  FAQELGRLEPETQKEIAQFTLTQIQPRVVSFEEQALVIREKLAGLYESEQEWSKAAQMLS 120

Query: 121 GIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVLNLQYK 180
           GIDLDSGMR +DD F+LSKC+QIARLYLEDDDAVNAEAFINKASFLVS+SQ EVLNLQYK
Sbjct: 121 GIDLDSGMRAVDDNFKLSKCIQIARLYLEDDDAVNAEAFINKASFLVSNSQNEVLNLQYK 180

Query: 181 VCYARILDLKRKFLEAALRYYDISQIQKRQIGDETIDEEALEQALSAAVTCTILAAAGPQ 240
           VCYARILD+KRKFLEAALRYY ISQI++RQIGDE IDE ALEQALSAAVTCTILA AGPQ
Sbjct: 181 VCYARILDMKRKFLEAALRYYGISQIEQRQIGDEEIDENALEQALSAAVTCTILAGAGPQ 240

Query: 241 RSRVLATLYKDERCSKLKIYPILQKVYLERILRKPEIDAFAEELKPHQKALLPDNFTVLD 300
           RSRVLATLYKDERCSKLKIYPILQKVYLERILR+PEIDAF+EEL+PHQKA LPD  TVLD
Sbjct: 241 RSRVLATLYKDERCSKLKIYPILQKVYLERILRRPEIDAFSEELRPHQKASLPDKSTVLD 300

Query: 301 RAMIEHNLLSASKLYTNISFEELGTLLGIAPQKAEKIASRMIFEDRMRGSIDQVEAVIHF 360
           RAMIEHNLLSASKLYTNI F+ELGTLL I P+KAEKIA+ MI +DRMRGSIDQ EAVIHF
Sbjct: 301 RAMIEHNLLSASKLYTNIRFDELGTLLAIDPRKAEKIAANMIGQDRMRGSIDQEEAVIHF 360

Query: 361 EDDTEELQQWDQQIVGLCQALNDILDSMAKKGLPIPV 397
           EDD EELQQWDQQI GLCQALNDILD MAKKG+ +PV
Sbjct: 361 EDDVEELQQWDQQISGLCQALNDILDGMAKKGMSVPV 397
Component of the COP9 signalosome complex (CSN), a complex involved in various cellular and developmental processes such as photomorphogenesis and auxin and jasmonate responses. The CSN complex is an essential regulator of the ubiquitin (Ubl) conjugation pathway by mediating the deneddylation of the cullin subunits of SCF-type E3 ligase complexes, leading to decrease the Ubl ligase activity of SCF. It is involved in repression of photomorphogenesis in darkness by regulating the activity of COP1-containing Ubl ligase complexes. The complex is also required for degradation of IAA6 by regulating the activity of the Ubl ligase SCF-TIR complex.
Arabidopsis thaliana (taxid: 3702)
>sp|Q54B82|CSN4_DICDI COP9 signalosome complex subunit 4 OS=Dictyostelium discoideum GN=csn4 PE=2 SV=1 Back     alignment and function description
>sp|Q3SZA0|CSN4_BOVIN COP9 signalosome complex subunit 4 OS=Bos taurus GN=COPS4 PE=2 SV=1 Back     alignment and function description
>sp|Q68FS2|CSN4_RAT COP9 signalosome complex subunit 4 OS=Rattus norvegicus GN=Cops4 PE=2 SV=1 Back     alignment and function description
>sp|A7Y521|CSN4_PIG COP9 signalosome complex subunit 4 OS=Sus scrofa GN=COPS4 PE=2 SV=1 Back     alignment and function description
>sp|Q4R5E6|CSN4_MACFA COP9 signalosome complex subunit 4 OS=Macaca fascicularis GN=COPS4 PE=2 SV=1 Back     alignment and function description
>sp|Q9BT78|CSN4_HUMAN COP9 signalosome complex subunit 4 OS=Homo sapiens GN=COPS4 PE=1 SV=1 Back     alignment and function description
>sp|O88544|CSN4_MOUSE COP9 signalosome complex subunit 4 OS=Mus musculus GN=Cops4 PE=1 SV=1 Back     alignment and function description
>sp|Q5R648|CSN4_PONAB COP9 signalosome complex subunit 4 OS=Pongo abelii GN=COPS4 PE=2 SV=1 Back     alignment and function description
>sp|Q6P0H6|CSN4_DANRE COP9 signalosome complex subunit 4 OS=Danio rerio GN=cops4 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query397
255538588397 cop9 complex subunit, putative [Ricinus 1.0 1.0 0.957 0.0
224129434397 predicted protein [Populus trichocarpa] 1.0 1.0 0.949 0.0
118483400397 unknown [Populus trichocarpa] 1.0 1.0 0.937 0.0
356531693397 PREDICTED: COP9 signalosome complex subu 1.0 1.0 0.926 0.0
356541824397 PREDICTED: COP9 signalosome complex subu 1.0 1.0 0.926 0.0
225458329397 PREDICTED: COP9 signalosome complex subu 0.969 0.969 0.942 0.0
147780809397 hypothetical protein VITISV_036371 [Viti 0.969 0.969 0.942 0.0
217073438392 unknown [Medicago truncatula] 0.987 1.0 0.913 0.0
449460112397 PREDICTED: COP9 signalosome complex subu 1.0 1.0 0.919 0.0
148909993401 unknown [Picea sitchensis] 1.0 0.990 0.866 0.0
>gi|255538588|ref|XP_002510359.1| cop9 complex subunit, putative [Ricinus communis] gi|223551060|gb|EEF52546.1| cop9 complex subunit, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  774 bits (1998), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 380/397 (95%), Positives = 390/397 (98%)

Query: 1   MESALASASAITDQRQKIEQYKHILSSVISSNDIVQAKKFIDHMLSDDVPLVVSRQLLQT 60
           MESA ASASAITDQRQKIEQYKHIL+SVISSNDI QAKKFIDHMLSDDVPLVVSRQLLQ+
Sbjct: 1   MESAFASASAITDQRQKIEQYKHILASVISSNDIDQAKKFIDHMLSDDVPLVVSRQLLQS 60

Query: 61  FAQELGRLEPETQKEIANYTLAQIQPRVVSFEEQVLIIREKLADLYESEQQWSKAAQMLS 120
           FAQELGRLEP+TQKEIA+YTLAQIQPRVVSFEEQVLIIREKLA+LYESEQQWSKAAQMLS
Sbjct: 61  FAQELGRLEPDTQKEIAHYTLAQIQPRVVSFEEQVLIIREKLAELYESEQQWSKAAQMLS 120

Query: 121 GIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVLNLQYK 180
           GIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVS+SQ EVLNLQYK
Sbjct: 121 GIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSNSQHEVLNLQYK 180

Query: 181 VCYARILDLKRKFLEAALRYYDISQIQKRQIGDETIDEEALEQALSAAVTCTILAAAGPQ 240
           VCYARILDLKRKFLEAALRYYDISQI+KRQIGDETIDEEALEQALSAAVTCTILAAAGPQ
Sbjct: 181 VCYARILDLKRKFLEAALRYYDISQIEKRQIGDETIDEEALEQALSAAVTCTILAAAGPQ 240

Query: 241 RSRVLATLYKDERCSKLKIYPILQKVYLERILRKPEIDAFAEELKPHQKALLPDNFTVLD 300
           RSRVLATLYKDERCSKLKIYPILQKVYLERILRKPEIDAFAEELK HQKALLPDNFTVLD
Sbjct: 241 RSRVLATLYKDERCSKLKIYPILQKVYLERILRKPEIDAFAEELKAHQKALLPDNFTVLD 300

Query: 301 RAMIEHNLLSASKLYTNISFEELGTLLGIAPQKAEKIASRMIFEDRMRGSIDQVEAVIHF 360
           RAMIEHNLLSASKLYTNISF+ELGTLLGI P KAEKIASRMI+EDRMRGSIDQVEAVIHF
Sbjct: 301 RAMIEHNLLSASKLYTNISFDELGTLLGIPPHKAEKIASRMIYEDRMRGSIDQVEAVIHF 360

Query: 361 EDDTEELQQWDQQIVGLCQALNDILDSMAKKGLPIPV 397
           EDDTEELQQWDQQIVGLCQALND+LDSMAKKGL IPV
Sbjct: 361 EDDTEELQQWDQQIVGLCQALNDVLDSMAKKGLSIPV 397

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224129434|ref|XP_002320585.1| predicted protein [Populus trichocarpa] gi|222861358|gb|EEE98900.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|118483400|gb|ABK93600.1| unknown [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356531693|ref|XP_003534411.1| PREDICTED: COP9 signalosome complex subunit 4-like [Glycine max] Back     alignment and taxonomy information
>gi|356541824|ref|XP_003539372.1| PREDICTED: COP9 signalosome complex subunit 4-like [Glycine max] Back     alignment and taxonomy information
>gi|225458329|ref|XP_002283011.1| PREDICTED: COP9 signalosome complex subunit 4 [Vitis vinifera] gi|302142470|emb|CBI19673.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|147780809|emb|CAN77214.1| hypothetical protein VITISV_036371 [Vitis vinifera] Back     alignment and taxonomy information
>gi|217073438|gb|ACJ85078.1| unknown [Medicago truncatula] Back     alignment and taxonomy information
>gi|449460112|ref|XP_004147790.1| PREDICTED: COP9 signalosome complex subunit 4-like [Cucumis sativus] gi|449476780|ref|XP_004154832.1| PREDICTED: COP9 signalosome complex subunit 4-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|148909993|gb|ABR18081.1| unknown [Picea sitchensis] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query397
TAIR|locus:2159961397 COP8 "AT5G42970" [Arabidopsis 1.0 1.0 0.858 1.2e-177
DICTYBASE|DDB_G0293844393 csn4 "proteasome component reg 0.962 0.972 0.489 7.8e-94
RGD|1302952406 Cops4 "COP9 signalosome subuni 0.914 0.894 0.518 3.4e-93
UNIPROTKB|Q3SZA0406 COPS4 "COP9 signalosome comple 0.914 0.894 0.524 5.5e-93
MGI|MGI:1349414406 Cops4 "COP9 (constitutive phot 0.914 0.894 0.521 5.5e-93
ZFIN|ZDB-GENE-030131-4317406 cops4 "COP9 constitutive photo 0.914 0.894 0.516 5.5e-93
UNIPROTKB|E2RT55406 COPS4 "Uncharacterized protein 0.914 0.894 0.524 7e-93
UNIPROTKB|Q9BT78406 COPS4 "COP9 signalosome comple 0.914 0.894 0.524 7e-93
UNIPROTKB|A7Y521406 COPS4 "COP9 signalosome comple 0.914 0.894 0.524 7e-93
UNIPROTKB|Q5ZJV0411 COPS4 "Uncharacterized protein 0.914 0.883 0.521 1.1e-92
TAIR|locus:2159961 COP8 "AT5G42970" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1725 (612.3 bits), Expect = 1.2e-177, P = 1.2e-177
 Identities = 341/397 (85%), Positives = 369/397 (92%)

Query:     1 MESALASASAITDQRQKIEQYKHILSSVISSNDIVQAKKFIDHMLSDDVPLVVSRQLLQT 60
             M+ AL +ASAI DQRQKIEQYK ILSSV+SSND++QA++FIDH+LSDDVPLVVSRQLLQ+
Sbjct:     1 MDEALTNASAIGDQRQKIEQYKLILSSVLSSNDLLQAQRFIDHILSDDVPLVVSRQLLQS 60

Query:    61 FAQELGRLEPETQKEIANYTLAQIQPRVVSFEEQVLIIREKLADLYESEQQWSKAAQMLS 120
             FAQELGRLEPETQKEIA +TL QIQPRVVSFEEQ L+IREKLA LYESEQ+WSKAAQMLS
Sbjct:    61 FAQELGRLEPETQKEIAQFTLTQIQPRVVSFEEQALVIREKLAGLYESEQEWSKAAQMLS 120

Query:   121 GIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVLNLQYK 180
             GIDLDSGMR +DD F+LSKC+QIARLYLEDDDAVNAEAFINKASFLVS+SQ EVLNLQYK
Sbjct:   121 GIDLDSGMRAVDDNFKLSKCIQIARLYLEDDDAVNAEAFINKASFLVSNSQNEVLNLQYK 180

Query:   181 VCYARILDLKRKFLEAALRYYDISQIQKRQIGDETIDEEALEQALSAAVTCTILAAAGPQ 240
             VCYARILD+KRKFLEAALRYY ISQI++RQIGDE IDE ALEQALSAAVTCTILA AGPQ
Sbjct:   181 VCYARILDMKRKFLEAALRYYGISQIEQRQIGDEEIDENALEQALSAAVTCTILAGAGPQ 240

Query:   241 RSRVLATLYKDERCSKLKIYPILQKVYLERILRKPEIDAFAEELKPHQKALLPDNFTVLD 300
             RSRVLATLYKDERCSKLKIYPILQKVYLERILR+PEIDAF+EEL+PHQKA LPD  TVLD
Sbjct:   241 RSRVLATLYKDERCSKLKIYPILQKVYLERILRRPEIDAFSEELRPHQKASLPDKSTVLD 300

Query:   301 RAMIEHNLLSASKLYTNISFEELGTLLGIAPQKAEKIASRMIFEDRMRGSIDQVEAVIHF 360
             RAMIEHNLLSASKLYTNI F+ELGTLL I P+KAEKIA+ MI +DRMRGSIDQ EAVIHF
Sbjct:   301 RAMIEHNLLSASKLYTNIRFDELGTLLAIDPRKAEKIAANMIGQDRMRGSIDQEEAVIHF 360

Query:   361 EDDTEELQQWDQQIVGLCQALNDILDSMAKKGLPIPV 397
             EDD EELQQWDQQI GLCQALNDILD MAKKG+ +PV
Sbjct:   361 EDDVEELQQWDQQISGLCQALNDILDGMAKKGMSVPV 397
GO:0008180 "signalosome" evidence=IDA;TAS;IPI
GO:0009640 "photomorphogenesis" evidence=RCA;TAS
GO:0005515 "protein binding" evidence=IPI
GO:0010388 "cullin deneddylation" evidence=RCA;IMP
GO:0010971 "positive regulation of G2/M transition of mitotic cell cycle" evidence=IMP
GO:0043234 "protein complex" evidence=IDA
GO:0005829 "cytosol" evidence=IDA
DICTYBASE|DDB_G0293844 csn4 "proteasome component region PCI (PINT) domain-containing protein" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
RGD|1302952 Cops4 "COP9 signalosome subunit 4" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|Q3SZA0 COPS4 "COP9 signalosome complex subunit 4" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
MGI|MGI:1349414 Cops4 "COP9 (constitutive photomorphogenic) homolog, subunit 4 (Arabidopsis thaliana)" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-030131-4317 cops4 "COP9 constitutive photomorphogenic homolog subunit 4 (Arabidopsis)" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|E2RT55 COPS4 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|Q9BT78 COPS4 "COP9 signalosome complex subunit 4" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|A7Y521 COPS4 "COP9 signalosome complex subunit 4" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|Q5ZJV0 COPS4 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9C467CSN4_EMENINo assigned EC number0.39400.96720.9411yesno
A7Y521CSN4_PIGNo assigned EC number0.52130.91430.8940yesno
Q9V345CSN4_DROMENo assigned EC number0.48020.92690.9041yesno
Q5R648CSN4_PONABNo assigned EC number0.51870.91430.8940yesno
Q9N359CSN4_CAEELNo assigned EC number0.33930.92190.8883yesno
Q54B82CSN4_DICDINo assigned EC number0.48970.96220.9720yesno
Q3SZA0CSN4_BOVINNo assigned EC number0.52130.91430.8940yesno
O88544CSN4_MOUSENo assigned EC number0.51870.91430.8940yesno
Q68FS2CSN4_RATNo assigned EC number0.51600.91430.8940yesno
Q8L5U0CSN4_ARATHNo assigned EC number0.85891.01.0yesno
Q9BT78CSN4_HUMANNo assigned EC number0.52130.91430.8940yesno
Q6P0H6CSN4_DANRENo assigned EC number0.51330.91430.8940yesno
Q4R5E6CSN4_MACFANo assigned EC number0.52130.91430.8940N/Ano

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query397
pfam01399100 pfam01399, PCI, PCI domain 3e-17
smart0075388 smart00753, PAM, PCI/PINT associated module 4e-11
smart0008888 smart00088, PINT, motif in proteasome subunits, In 4e-11
COG5071439 COG5071, RPN5, 26S proteasome regulatory complex c 9e-06
>gnl|CDD|216479 pfam01399, PCI, PCI domain Back     alignment and domain information 
 Score = 76.1 bits (188), Expect = 3e-17
 Identities = 33/98 (33%), Positives = 52/98 (53%), Gaps = 4/98 (4%)

Query: 267 YLERILRKPEIDAFAEELKPHQKAL----LPDNFTVLDRAMIEHNLLSASKLYTNISFEE 322
            L R     ++  F E L  ++  L    L +    L R + E NL   +K Y++IS  +
Sbjct: 3   DLLRAFYSGDLSDFEEILADNEDELLDDGLAELLEDLRRKIRELNLRRLAKPYSSISLSD 62

Query: 323 LGTLLGIAPQKAEKIASRMIFEDRMRGSIDQVEAVIHF 360
           L  LLG++  + EKI S++I + R+RG IDQV  ++ F
Sbjct: 63  LAKLLGLSVDEVEKILSKLIRDGRIRGKIDQVNGIVVF 100

This domain has also been called the PINT motif (Proteasome, Int-6, Nip-1 and TRIP-15). Length = 100
>gnl|CDD|214803 smart00753, PAM, PCI/PINT associated module Back     alignment and domain information
>gnl|CDD|214509 smart00088, PINT, motif in proteasome subunits, Int-6, Nip-1 and TRIP-15 Back     alignment and domain information
>gnl|CDD|227403 COG5071, RPN5, 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 397
KOG1497399 consensus COP9 signalosome, subunit CSN4 [Posttran 100.0
KOG1498439 consensus 26S proteasome regulatory complex, subun 100.0
COG5071439 RPN5 26S proteasome regulatory complex component [ 100.0
KOG1463411 consensus 26S proteasome regulatory complex, subun 100.0
COG5159421 RPN6 26S proteasome regulatory complex component [ 100.0
KOG0687393 consensus 26S proteasome regulatory complex, subun 100.0
KOG1464440 consensus COP9 signalosome, subunit CSN2 [Posttran 99.97
COG5187412 RPN7 26S proteasome regulatory complex component, 99.95
KOG2581493 consensus 26S proteasome regulatory complex, subun 99.87
KOG2908380 consensus 26S proteasome regulatory complex, subun 99.73
KOG0686466 consensus COP9 signalosome, subunit CSN1 [Posttran 99.7
PF01399105 PCI: PCI domain; InterPro: IPR000717 A homology do 99.65
PF10602177 RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 99.6
smart0075388 PAM PCI/PINT associated module. 99.42
smart0008888 PINT motif in proteasome subunits, Int-6, Nip-1 an 99.42
KOG2582422 consensus COP9 signalosome, subunit CSN3 [Posttran 99.36
KOG2753378 consensus Uncharacterized conserved protein, conta 98.3
KOG2688394 consensus Transcription-associated recombination p 98.16
KOG1076843 consensus Translation initiation factor 3, subunit 98.05
COG5600413 Transcription-associated recombination protein [DN 97.99
KOG2758432 consensus Translation initiation factor 3, subunit 97.66
PF10255404 Paf67: RNA polymerase I-associated factor PAF67; I 97.34
PF09976145 TPR_21: Tetratricopeptide repeat; InterPro: IPR018 97.27
PF14938282 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 97.19
KOG2072 988 consensus Translation initiation factor 3, subunit 96.69
PF14938282 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 96.17
cd00189100 TPR Tetratricopeptide repeat domain; typically con 95.72
TIGR02795119 tol_pal_ybgF tol-pal system protein YbgF. Members 95.58
TIGR02521234 type_IV_pilW type IV pilus biogenesis/stability pr 95.46
KOG1840508 consensus Kinesin light chain [Cytoskeleton] 95.45
KOG2076 895 consensus RNA polymerase III transcription factor 95.24
PF10075143 PCI_Csn8: COP9 signalosome, subunit CSN8; InterPro 95.12
PF1342478 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 95.02
PF09976145 TPR_21: Tetratricopeptide repeat; InterPro: IPR018 94.96
KOG2300 629 consensus Uncharacterized conserved protein [Funct 94.65
PF0901269 FeoC: FeoC like transcriptional regulator; InterPr 94.6
PRK02603172 photosystem I assembly protein Ycf3; Provisional 94.04
PRK11788389 tetratricopeptide repeat protein; Provisional 93.79
PF1342478 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 93.66
TIGR02521234 type_IV_pilW type IV pilus biogenesis/stability pr 93.65
PF1289584 Apc3: Anaphase-promoting complex, cyclosome, subun 93.64
COG3063250 PilF Tfp pilus assembly protein PilF [Cell motilit 93.61
CHL00033168 ycf3 photosystem I assembly protein Ycf3 93.3
TIGR02552135 LcrH_SycD type III secretion low calcium response 93.18
COG2956389 Predicted N-acetylglucosaminyl transferase [Carboh 92.93
PRK11788389 tetratricopeptide repeat protein; Provisional 92.82
PF10345 608 Cohesin_load: Cohesin loading factor; InterPro: IP 92.76
PF04348 536 LppC: LppC putative lipoprotein; InterPro: IPR0074 92.26
KOG1840508 consensus Kinesin light chain [Cytoskeleton] 92.24
PF12569517 NARP1: NMDA receptor-regulated protein 1 ; InterPr 92.07
PF09295395 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter 91.99
PF1455968 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN 91.98
PF1343265 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL 91.93
PF09756188 DDRGK: DDRGK domain; InterPro: IPR019153 This is a 91.89
KOG2003840 consensus TPR repeat-containing protein [General f 91.67
PLN03218 1060 maturation of RBCL 1; Provisional 91.58
COG2956389 Predicted N-acetylglucosaminyl transferase [Carboh 91.26
PF1289584 Apc3: Anaphase-promoting complex, cyclosome, subun 91.09
PLN03218 1060 maturation of RBCL 1; Provisional 91.07
TIGR00540409 hemY_coli hemY protein. This is an uncharacterized 90.97
PF1341469 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A 90.86
TIGR03302235 OM_YfiO outer membrane assembly lipoprotein YfiO. 90.75
PRK10049 765 pgaA outer membrane protein PgaA; Provisional 90.63
PF03704146 BTAD: Bacterial transcriptional activator domain; 89.97
KOG1586288 consensus Protein required for fusion of vesicles 89.8
TIGR02917 899 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat 89.74
PF1341469 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A 89.69
PF1343265 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL 89.54
cd05804355 StaR_like StaR_like; a well-conserved protein foun 89.45
PF08784102 RPA_C: Replication protein A C terminal; InterPro: 89.43
TIGR00990615 3a0801s09 mitochondrial precursor proteins import 88.99
COG3107 604 LppC Putative lipoprotein [General function predic 88.65
TIGR00990615 3a0801s09 mitochondrial precursor proteins import 88.43
PLN03088356 SGT1, suppressor of G2 allele of SKP1; Provisional 88.32
KOG2003840 consensus TPR repeat-containing protein [General f 88.3
PRK15359144 type III secretion system chaperone protein SscB; 88.04
TIGR02917899 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat 88.0
KOG2300629 consensus Uncharacterized conserved protein [Funct 87.48
PRK10370198 formate-dependent nitrite reductase complex subuni 87.06
TIGR03302235 OM_YfiO outer membrane assembly lipoprotein YfiO. 86.84
PRK11189296 lipoprotein NlpI; Provisional 86.27
KOG1129478 consensus TPR repeat-containing protein [General f 86.12
PF1280262 MarR_2: MarR family; PDB: 3ECO_B 2QWW_B 3KP6_B 3KP 86.02
PRK1543178 ferrous iron transport protein FeoC; Provisional 85.77
PF04733290 Coatomer_E: Coatomer epsilon subunit; InterPro: IP 85.56
PLN03081697 pentatricopeptide (PPR) repeat-containing protein; 83.47
PRK11447 1157 cellulose synthase subunit BcsC; Provisional 83.18
KOG2076 895 consensus RNA polymerase III transcription factor 83.11
PRK11447 1157 cellulose synthase subunit BcsC; Provisional 83.07
PF1341248 HTH_24: Winged helix-turn-helix DNA-binding; PDB: 83.04
KOG3785 557 consensus Uncharacterized conserved protein [Funct 82.97
PRK09782 987 bacteriophage N4 receptor, outer membrane subunit; 82.95
PF12688120 TPR_5: Tetratrico peptide repeat 82.58
KOG3250258 consensus COP9 signalosome, subunit CSN7 [Posttran 82.51
PF1337173 TPR_9: Tetratricopeptide repeat 82.49
KOG1586288 consensus Protein required for fusion of vesicles 82.34
PF03399204 SAC3_GANP: SAC3/GANP/Nin1/mts3/eIF-3 p25 family; I 82.24
PF12569 517 NARP1: NMDA receptor-regulated protein 1 ; InterPr 82.1
PF04733290 Coatomer_E: Coatomer epsilon subunit; InterPro: IP 81.8
PF1337173 TPR_9: Tetratricopeptide repeat 81.75
CHL00033168 ycf3 photosystem I assembly protein Ycf3 81.74
KOG2002 1018 consensus TPR-containing nuclear phosphoprotein th 81.63
smart0055068 Zalpha Z-DNA-binding domain in adenosine deaminase 81.62
PRK10803263 tol-pal system protein YbgF; Provisional 81.42
PRK14574 822 hmsH outer membrane protein; Provisional 80.37
PF13429280 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 80.36
cd00189100 TPR Tetratricopeptide repeat domain; typically con 80.06
>KOG1497 consensus COP9 signalosome, subunit CSN4 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] Back     alignment and domain information 
Probab=100.00  E-value=2.3e-83  Score=601.16  Aligned_cols=384  Identities=57%  Similarity=0.886  Sum_probs=369.7

Q ss_pred             HHHhhhhcchhhHhHHHHHHHHHHhhcCCC---HHHHHHHHHHHhcCCcchhhhHHHHHHHHHHhCCCChHHHHHHHHHH
Q 015984            4 ALASASAITDQRQKIEQYKHILSSVISSND---IVQAKKFIDHMLSDDVPLVVSRQLLQTFAQELGRLEPETQKEIANYT   80 (397)
Q Consensus         4 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~sr~~~~~~~~~l~~l~~~~~~~~~~~~   80 (397)
                      .+.-+-..+|||++.++|+.+|+..++++.   .+.++.|++++++++|++|+|||+++.|...|+.+|++++|++.+++
T Consensus         8 ev~~~~~~g~hk~~~~qyr~~l~~~lt~~~~el~e~~k~~id~~~~~~vslvvsrqllsl~~~~l~~l~~e~~Kei~~~~   87 (399)
T KOG1497|consen    8 EVVLIFAEGDHKDQAEQYRQLLAKVLTNNGMELLEALKRFIDAIVNENVSLVVSRQLLSLFDVELSILEDELRKEISHFT   87 (399)
T ss_pred             HHHHHHhcCchhhHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHcCCchhhhHHHHHHHHHHHhccCCHHHHHHHHHHH
Confidence            344556678999999999999999998873   58899999999999999999999999999999999999999999999


Q ss_pred             HHhhccccchHHHHHHHHHHHHHHHHHhhhcHHHHHHHHhhchhccCCCCCchhHHHHHHHHHHHHHhhcCChHHHHHHH
Q 015984           81 LAQIQPRVVSFEEQVLIIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFI  160 (397)
Q Consensus        81 l~~~~~~~~~~e~q~~~l~~~La~~~e~~~d~~~Aa~~L~~i~~et~~~~~~~~~kle~~L~i~Rl~L~~~d~~~A~~~l  160 (397)
                      ++.++||.+|||+|++.+|.+||.+||++++|+.||.+|.+|+.+||++..+.+.|+..|+++.|+||+.+|.+.|+.++
T Consensus        88 l~~iq~rvisfeEqv~~irl~LAsiYE~Eq~~~~aaq~L~~I~~~tg~~~~d~~~kl~l~iriarlyLe~~d~veae~~i  167 (399)
T KOG1497|consen   88 LEKIQPRVISFEEQVASIRLHLASIYEKEQNWRDAAQVLVGIPLDTGQKAYDVEQKLLLCIRIARLYLEDDDKVEAEAYI  167 (399)
T ss_pred             HHhcccccccHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccCcccchhhhhhHHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhcccccCcchHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHHHHHhcCCCCc
Q 015984          161 NKASFLVSSSQQEVLNLQYKVCYARILDLKRKFLEAALRYYDISQIQKRQIGDETIDEEALEQALSAAVTCTILAAAGPQ  240 (397)
Q Consensus       161 ~ka~~~~~~~~~~~l~~~~~~~~~~~~~~~r~f~~Aa~~y~e~~~~~~~~~~~~~~~~~~~~~~L~~av~~~ILa~~~~~  240 (397)
                      ||++-......++++++.|++|+||++|.+|+|.|||++||+++++       ..+++.++.++|+.++.|++||.+||+
T Consensus       168 nRaSil~a~~~Ne~Lqie~kvc~ARvlD~krkFlEAAqrYyels~~-------ki~~e~~~~~aL~~a~~CtlLA~~gpq  240 (399)
T KOG1497|consen  168 NRASILQAESSNEQLQIEYKVCYARVLDYKRKFLEAAQRYYELSQR-------KIVDESERLEALKKALQCTLLASAGPQ  240 (399)
T ss_pred             HHHHHhhhcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HhcchHHHHHHHHHhHhheeecCCChH
Confidence            9999988777899999999999999999999999999999999995       457899999999999999999999999


Q ss_pred             chHHHHhhhhchhhccccchHHHHHHHHHhhcChhhHHHHHHHhchhhhhhCCCchhhHHHHHHHHHHHHHHhhccccCH
Q 015984          241 RSRVLATLYKDERCSKLKIYPILQKVYLERILRKPEIDAFAEELKPHQKALLPDNFTVLDRAMIEHNLLSASKLYTNISF  320 (397)
Q Consensus       241 rs~ll~~l~~d~~~~~l~~~~~L~k~f~~~ii~~~~l~~F~~~L~~h~~~~~~d~~~~L~~~v~EhNl~~is~~Y~~Isl  320 (397)
                      |+|+|+.+++|+||+++|.|..+.|||++++|+.+++++|++.|.|||++-+.||.++|.++++||||+.+|++|.||||
T Consensus       241 rsr~Latlfkder~~~l~~y~ileKmyl~riI~k~el~ef~~~L~pHQka~~~dgssil~ra~~EhNlls~Skly~nisf  320 (399)
T KOG1497|consen  241 RSRMLATLFKDERCQKLPAYGILEKMYLERIIRKEELQEFEAFLQPHQKAHTMDGSSILDRAVIEHNLLSASKLYNNISF  320 (399)
T ss_pred             HHHHHHHHhcCcccccccchHHHHHHHHHHHhcchhHHHHHHHhcchhhhcccCcchhhhhHHHHHhHHHHHHHHHhccH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhCCChHHHHHHHHHhHhcCceEEEeccCCcEEEECCcchHHHHHHHHHHHHHHHHHHHHHHHhhcCCCC
Q 015984          321 EELGTLLGIAPQKAEKIASRMIFEDRMRGSIDQVEAVIHFEDDTEELQQWDQQIVGLCQALNDILDSMAKKGLPI  395 (397)
Q Consensus       321 ~~La~ll~ls~~~~E~~ls~mI~~grl~gkIDQv~giV~f~~~~~~l~~w~~~I~~l~~~v~~v~~~i~~~~~~~  395 (397)
                      +.||.+|++|++++|+++++||.+||++|.|||.+|+|+|++ .+.+..||.+|.++|..||++.+.|.+.|+.|
T Consensus       321 ~~Lg~ll~i~~ekaekiaa~MI~qeRmng~IDQ~egiihFe~-~e~l~~wdkqi~sl~~qvNki~~~i~~~~s~~  394 (399)
T KOG1497|consen  321 EELGALLKIDAEKAEKIAAQMITQERMNGSIDQIEGIIHFED-REELPQWDKQIQSLCNQVNKILDKISHYGSEW  394 (399)
T ss_pred             HHHHHHhCCCHHHHHHHHHHHHhHHHhccchHhhcceEeecc-hhhhhhhhHHHHHHHHHHHHHHHHHHHhCcch
Confidence            999999999999999999999999999999999999999997 47899999999999999999999999998654

>KOG1498 consensus 26S proteasome regulatory complex, subunit RPN5/PSMD12 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG5071 RPN5 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] Back     alignment and domain information
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] Back     alignment and domain information
>PF01399 PCI: PCI domain; InterPro: IPR000717 A homology domain of unclear function, occurs in the C-terminal region of several regulatory components of the 26S proteasome as well as in other proteins Back     alignment and domain information
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome Back     alignment and domain information
>smart00753 PAM PCI/PINT associated module Back     alignment and domain information
>smart00088 PINT motif in proteasome subunits, Int-6, Nip-1 and TRIP-15 Back     alignment and domain information
>KOG2582 consensus COP9 signalosome, subunit CSN3 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] Back     alignment and domain information
>KOG2753 consensus Uncharacterized conserved protein, contains PCI domain [General function prediction only] Back     alignment and domain information
>KOG2688 consensus Transcription-associated recombination protein - Thp1p [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG1076 consensus Translation initiation factor 3, subunit c (eIF-3c) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>COG5600 Transcription-associated recombination protein [DNA replication, recombination, and repair] Back     alignment and domain information
>KOG2758 consensus Translation initiation factor 3, subunit e (eIF-3e) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [] Back     alignment and domain information
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function Back     alignment and domain information
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A Back     alignment and domain information
>KOG2072 consensus Translation initiation factor 3, subunit a (eIF-3a) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A Back     alignment and domain information
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C Back     alignment and domain information
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF Back     alignment and domain information
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW Back     alignment and domain information
>KOG1840 consensus Kinesin light chain [Cytoskeleton] Back     alignment and domain information
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] Back     alignment and domain information
>PF10075 PCI_Csn8: COP9 signalosome, subunit CSN8; InterPro: IPR019280 The photomorphogenic 9 (COP9) signalosome or CSN complex is composed of eight subunits: Cops1/GPS1, Cops2, Cops3, Cops4, Cops5, Cop6, Cops7 (Cops7A or Cops7B) and Cops8 Back     alignment and domain information
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H Back     alignment and domain information
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function Back     alignment and domain information
>KOG2300 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF09012 FeoC: FeoC like transcriptional regulator; InterPro: IPR015102 This entry contains several transcriptional regulators, including FeoC, which contain a HTH motif Back     alignment and domain information
>PRK02603 photosystem I assembly protein Ycf3; Provisional Back     alignment and domain information
>PRK11788 tetratricopeptide repeat protein; Provisional Back     alignment and domain information
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H Back     alignment and domain information
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW Back     alignment and domain information
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A Back     alignment and domain information
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] Back     alignment and domain information
>CHL00033 ycf3 photosystem I assembly protein Ycf3 Back     alignment and domain information
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD Back     alignment and domain information
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PRK11788 tetratricopeptide repeat protein; Provisional Back     alignment and domain information
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi Back     alignment and domain information
>PF04348 LppC: LppC putative lipoprotein; InterPro: IPR007443 This entry includes several bacterial outer membrane antigens, whose molecular function is unknown Back     alignment and domain information
>KOG1840 consensus Kinesin light chain [Cytoskeleton] Back     alignment and domain information
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala Back     alignment and domain information
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi Back     alignment and domain information
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A Back     alignment and domain information
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B Back     alignment and domain information
>PF09756 DDRGK: DDRGK domain; InterPro: IPR019153 This is a family of proteins of approximately 300 residues Back     alignment and domain information
>KOG2003 consensus TPR repeat-containing protein [General function prediction only] Back     alignment and domain information
>PLN03218 maturation of RBCL 1; Provisional Back     alignment and domain information
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A Back     alignment and domain information
>PLN03218 maturation of RBCL 1; Provisional Back     alignment and domain information
>TIGR00540 hemY_coli hemY protein Back     alignment and domain information
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A Back     alignment and domain information
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO Back     alignment and domain information
>PRK10049 pgaA outer membrane protein PgaA; Provisional Back     alignment and domain information
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production Back     alignment and domain information
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein Back     alignment and domain information
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A Back     alignment and domain information
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B Back     alignment and domain information
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals Back     alignment and domain information
>PF08784 RPA_C: Replication protein A C terminal; InterPro: IPR014892 This protein corresponds to the C-terminal of the single stranded DNA binding protein RPA (replication protein A) Back     alignment and domain information
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) Back     alignment and domain information
>COG3107 LppC Putative lipoprotein [General function prediction only] Back     alignment and domain information
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) Back     alignment and domain information
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional Back     alignment and domain information
>KOG2003 consensus TPR repeat-containing protein [General function prediction only] Back     alignment and domain information
>PRK15359 type III secretion system chaperone protein SscB; Provisional Back     alignment and domain information
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein Back     alignment and domain information
>KOG2300 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional Back     alignment and domain information
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO Back     alignment and domain information
>PRK11189 lipoprotein NlpI; Provisional Back     alignment and domain information
>KOG1129 consensus TPR repeat-containing protein [General function prediction only] Back     alignment and domain information
>PF12802 MarR_2: MarR family; PDB: 3ECO_B 2QWW_B 3KP6_B 3KP4_B 3KP2_A 3KP5_A 3KP3_B 3KP7_A 3NQO_B 3K0L_B Back     alignment and domain information
>PRK15431 ferrous iron transport protein FeoC; Provisional Back     alignment and domain information
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment Back     alignment and domain information
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional Back     alignment and domain information
>PRK11447 cellulose synthase subunit BcsC; Provisional Back     alignment and domain information
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] Back     alignment and domain information
>PRK11447 cellulose synthase subunit BcsC; Provisional Back     alignment and domain information
>PF13412 HTH_24: Winged helix-turn-helix DNA-binding; PDB: 1I1G_B 2IA0_B 3I4P_A 2GQQ_A 2L4A_A 2CFX_B 2DBB_B 2EFO_A 2EFQ_A 2PN6_A Back     alignment and domain information
>KOG3785 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional Back     alignment and domain information
>PF12688 TPR_5: Tetratrico peptide repeat Back     alignment and domain information
>KOG3250 consensus COP9 signalosome, subunit CSN7 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] Back     alignment and domain information
>PF13371 TPR_9: Tetratricopeptide repeat Back     alignment and domain information
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF03399 SAC3_GANP: SAC3/GANP/Nin1/mts3/eIF-3 p25 family; InterPro: IPR005062 This large family includes diverse proteins involved in large complexes [, , ] Back     alignment and domain information
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala Back     alignment and domain information
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment Back     alignment and domain information
>PF13371 TPR_9: Tetratricopeptide repeat Back     alignment and domain information
>CHL00033 ycf3 photosystem I assembly protein Ycf3 Back     alignment and domain information
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] Back     alignment and domain information
>smart00550 Zalpha Z-DNA-binding domain in adenosine deaminases Back     alignment and domain information
>PRK10803 tol-pal system protein YbgF; Provisional Back     alignment and domain information
>PRK14574 hmsH outer membrane protein; Provisional Back     alignment and domain information
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B Back     alignment and domain information
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query397
1ufm_A84 Solution Structure Of The Pci Domain Length = 84 2e-20
>pdb|1UFM|A Chain A, Solution Structure Of The Pci Domain Length = 84 Back     alignment and structure 
Iteration: 1

 Score = 96.7 bits (239), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 45/64 (70%), Positives = 53/64 (82%)
Query: 298 VLDRAMIEHNLLSASKLYTNISFEELGTLLGIAPQKAEKIASRMIFEDRMRGSIDQVEAV 357
           +LDRA+IEHNLLSASKLY NI+FEELG LL I   KAEKIAS+MI E RM G IDQ++ +
Sbjct: 11  ILDRAVIEHNLLSASKLYNNITFEELGALLEIPAAKAEKIASQMITEGRMNGFIDQIDGI 70
Query: 358 IHFE 361
           +HFE
Sbjct: 71  VHFE 74

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query397
1ufm_A84 COP9 complex subunit 4; helix-turn-helix, structur 3e-24
3txn_A394 26S proteasome regulatory complex subunit P42B; PC 3e-23
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-12
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-07
>1ufm_A COP9 complex subunit 4; helix-turn-helix, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Mus musculus} SCOP: a.4.5.47 Length = 84 Back     alignment and structure
 Score = 94.1 bits (234), Expect = 3e-24
 Identities = 45/69 (65%), Positives = 54/69 (78%)

Query: 294 DNFTVLDRAMIEHNLLSASKLYTNISFEELGTLLGIAPQKAEKIASRMIFEDRMRGSIDQ 353
              ++LDRA+IEHNLLSASKLY NI+FEELG LL I   KAEKIAS+MI E RM G IDQ
Sbjct: 7   GGSSILDRAVIEHNLLSASKLYNNITFEELGALLEIPAAKAEKIASQMITEGRMNGFIDQ 66

Query: 354 VEAVIHFED 362
           ++ ++HFE 
Sbjct: 67  IDGIVHFET 75
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A Length = 394 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query397
4b4t_P445 26S proteasome regulatory subunit RPN5; hydrolase, 100.0
3txn_A394 26S proteasome regulatory complex subunit P42B; PC 100.0
4b4t_R429 RPN7, 26S proteasome regulatory subunit RPN7; hydr 100.0
4b4t_Q434 26S proteasome regulatory subunit RPN6; hydrolase, 100.0
4b4t_S523 RPN3, 26S proteasome regulatory subunit RPN3; hydr 99.94
4b4t_O393 26S proteasome regulatory subunit RPN9; hydrolase, 99.93
1ufm_A84 COP9 complex subunit 4; helix-turn-helix, structur 99.82
3t5x_A203 PCI domain-containing protein 2; PCI, mRNA nuclear 99.69
3t5v_B455 Nuclear mRNA export protein THP1; PCI, mRNA nuclea 99.6
3chm_A169 COP9 signalosome complex subunit 7; heat/ARM repea 98.37
4b0z_A229 RPN12, 26S proteasome regulatory subunit RPN12; pr 98.19
3ro3_A164 PINS homolog, G-protein-signaling modulator 2; asy 97.58
3ro3_A164 PINS homolog, G-protein-signaling modulator 2; asy 97.57
3u3w_A293 Transcriptional activator PLCR protein; ternary co 97.49
3ro2_A338 PINS homolog, G-protein-signaling modulator 2; TPR 97.35
3gw4_A203 Uncharacterized protein; structural genomics, PSI- 97.31
3sf4_A406 G-protein-signaling modulator 2; tetratricopeptide 97.28
3nf1_A311 KLC 1, kinesin light chain 1; TPR, structural geno 97.25
3sf4_A406 G-protein-signaling modulator 2; tetratricopeptide 97.25
4a1s_A411 PINS, partner of inscuteable; cell cycle, LGN, mit 97.24
3ro2_A338 PINS homolog, G-protein-signaling modulator 2; TPR 97.21
3gw4_A203 Uncharacterized protein; structural genomics, PSI- 97.07
4a1s_A411 PINS, partner of inscuteable; cell cycle, LGN, mit 97.01
3u3w_A293 Transcriptional activator PLCR protein; ternary co 97.0
3ulq_A383 Response regulator aspartate phosphatase F; tetrat 96.97
2qfc_A293 PLCR protein; TPR, HTH, transcription regulation; 96.95
1qqe_A292 Vesicular transport protein SEC17; helix-turn-heli 96.92
1elr_A131 TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp 96.87
2qfc_A293 PLCR protein; TPR, HTH, transcription regulation; 96.87
4ga2_A150 E3 SUMO-protein ligase ranbp2; TPR motif, nuclear 96.81
4gcn_A127 Protein STI-1; structural genomics, PSI-biology, m 96.8
3nf1_A311 KLC 1, kinesin light chain 1; TPR, structural geno 96.75
3edt_B283 KLC 2, kinesin light chain 2; superhelical, struct 96.69
2ifu_A307 Gamma-SNAP; membrane fusion, snare complex disasse 96.61
3ulq_A383 Response regulator aspartate phosphatase F; tetrat 96.59
2dba_A148 Smooth muscle cell associated protein-1, isoform 2 96.58
3edt_B283 KLC 2, kinesin light chain 2; superhelical, struct 96.54
4gco_A126 Protein STI-1; structural genomics, PSI-biology, m 96.5
3q15_A378 PSP28, response regulator aspartate phosphatase H; 96.47
2xev_A129 YBGF; tetratricopeptide, alpha-helical, metal bind 96.43
2ifu_A307 Gamma-SNAP; membrane fusion, snare complex disasse 96.38
3q15_A378 PSP28, response regulator aspartate phosphatase H; 96.37
3as5_A186 MAMA; tetratricopeptide repeats (TPR) containing p 96.22
2vyi_A131 SGTA protein; chaperone, TPR repeat, phosphoprotei 96.18
2ho1_A252 Type 4 fimbrial biogenesis protein PILF; type IV p 96.16
3mkr_A291 Coatomer subunit epsilon; tetratricopeptide repeat 96.13
2vq2_A225 PILW, putative fimbrial biogenesis and twitching m 96.11
3uq3_A258 Heat shock protein STI1; HSP90, peptide binding, c 96.08
3vtx_A184 MAMA; tetratricopeptide repeats (TPR) containing p 96.04
2lni_A133 Stress-induced-phosphoprotein 1; structural genomi 96.02
3sz7_A164 HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G 96.01
1elw_A118 TPR1-domain of HOP; HOP, TPR-domain, peptide-compl 95.95
3n71_A490 Histone lysine methyltransferase SMYD1; heart deve 95.93
3upv_A126 Heat shock protein STI1; TPR-fold, adaptor protein 95.92
4ga2_A150 E3 SUMO-protein ligase ranbp2; TPR motif, nuclear 95.9
3gyz_A151 Chaperone protein IPGC; asymmetric homodimer, tetr 95.89
4b4t_Q434 26S proteasome regulatory subunit RPN6; hydrolase, 95.78
1qqe_A292 Vesicular transport protein SEC17; helix-turn-heli 95.77
1a17_A166 Serine/threonine protein phosphatase 5; hydrolase, 95.73
2fbn_A198 70 kDa peptidylprolyl isomerase, putative; sulfur 95.69
1na0_A125 Designed protein CTPR3; de novo protein; HET: IPT; 95.57
3q49_B137 STIP1 homology and U box-containing protein 1; E3 95.57
3uq3_A258 Heat shock protein STI1; HSP90, peptide binding, c 95.53
1hz4_A373 MALT regulatory protein; two-helix bundles, helix 95.53
2xpi_A597 Anaphase-promoting complex subunit CUT9; cell cycl 95.43
2xcb_A142 PCRH, regulatory protein PCRH; protein transport, 95.4
3rkv_A162 Putative peptidylprolyl isomerase; structural geno 95.4
3mv2_B310 Coatomer subunit epsilon; vesicular membrane coat 95.39
3as5_A186 MAMA; tetratricopeptide repeats (TPR) containing p 95.35
4i17_A228 Hypothetical protein; TPR repeats protein, structu 95.29
2vgx_A148 Chaperone SYCD; alternative dimer assembly, tetrat 95.21
3qky_A261 Outer membrane assembly lipoprotein YFIO; membrane 95.16
2l6j_A111 TPR repeat-containing protein associated with HSP; 95.12
1hh8_A213 P67PHOX, NCF-2, neutrophil cytosol factor 2; cell 95.09
1hxi_A121 PEX5, peroxisome targeting signal 1 receptor PEX5; 95.09
2q7f_A243 YRRB protein; TPR, protein binding; 2.49A {Bacillu 95.05
2fo7_A136 Synthetic consensus TPR protein; tetratricopeptide 94.85
1hz4_A373 MALT regulatory protein; two-helix bundles, helix 94.84
3hym_B330 Cell division cycle protein 16 homolog; APC, anaph 94.83
2fo7_A136 Synthetic consensus TPR protein; tetratricopeptide 94.83
1ihg_A370 Cyclophilin 40; ppiase immunophilin tetratricopept 94.76
3u4t_A272 TPR repeat-containing protein; structural genomics 94.76
2ho1_A252 Type 4 fimbrial biogenesis protein PILF; type IV p 94.7
3qky_A261 Outer membrane assembly lipoprotein YFIO; membrane 94.69
3ieg_A359 DNAJ homolog subfamily C member 3; TPR motif, chap 94.64
1hh8_A213 P67PHOX, NCF-2, neutrophil cytosol factor 2; cell 94.55
2kck_A112 TPR repeat; tetratricopeptide repeat, structural g 94.53
3mv2_B310 Coatomer subunit epsilon; vesicular membrane coat 94.49
4eqf_A365 PEX5-related protein; accessory protein, tetratric 94.48
2e2e_A177 Formate-dependent nitrite reductase complex NRFG; 94.43
1p5q_A336 FKBP52, FK506-binding protein 4; isomerase; 2.80A 94.42
3ieg_A359 DNAJ homolog subfamily C member 3; TPR motif, chap 94.4
1wi9_A72 Protein C20ORF116 homolog; helix-turn-helix motif, 94.37
2q7f_A243 YRRB protein; TPR, protein binding; 2.49A {Bacillu 94.34
2xpi_A597 Anaphase-promoting complex subunit CUT9; cell cycl 94.22
1a17_A166 Serine/threonine protein phosphatase 5; hydrolase, 94.21
2y4t_A450 DNAJ homolog subfamily C member 3; chaperone, endo 94.14
4i17_A228 Hypothetical protein; TPR repeats protein, structu 94.12
4eqf_A365 PEX5-related protein; accessory protein, tetratric 94.1
3vtx_A184 MAMA; tetratricopeptide repeats (TPR) containing p 94.05
3fp2_A537 TPR repeat-containing protein YHR117W; TOM71, mito 94.01
1fch_A368 Peroxisomal targeting signal 1 receptor; protein-p 94.0
2gw1_A514 Mitochondrial precursor proteins import receptor; 93.93
4f3v_A282 ESX-1 secretion system protein ECCA1; tetratricope 93.93
1xnf_A275 Lipoprotein NLPI; TPR, tetratricopeptide, structur 93.89
2vq2_A225 PILW, putative fimbrial biogenesis and twitching m 93.84
3hym_B330 Cell division cycle protein 16 homolog; APC, anaph 93.79
2y4t_A450 DNAJ homolog subfamily C member 3; chaperone, endo 93.77
3fp2_A537 TPR repeat-containing protein YHR117W; TOM71, mito 93.77
3mkr_A291 Coatomer subunit epsilon; tetratricopeptide repeat 93.75
2c2l_A281 CHIP, carboxy terminus of HSP70-interacting protei 93.69
1kt0_A457 FKBP51, 51 kDa FK506-binding protein; FKBP-like pp 93.59
3k9i_A117 BH0479 protein; putative protein binding protein, 93.54
2yhc_A225 BAMD, UPF0169 lipoprotein YFIO; essential BAM comp 93.32
3n71_A490 Histone lysine methyltransferase SMYD1; heart deve 93.21
3u4t_A272 TPR repeat-containing protein; structural genomics 93.14
3cv0_A327 Peroxisome targeting signal 1 receptor PEX5; TPR m 93.06
1xnf_A275 Lipoprotein NLPI; TPR, tetratricopeptide, structur 92.99
3urz_A208 Uncharacterized protein; tetratricopeptide repeats 92.92
1fch_A368 Peroxisomal targeting signal 1 receptor; protein-p 92.83
2yhc_A225 BAMD, UPF0169 lipoprotein YFIO; essential BAM comp 92.82
2pl2_A217 Hypothetical conserved protein TTC0263; TPR, prote 92.8
2gw1_A514 Mitochondrial precursor proteins import receptor; 92.8
2pl2_A217 Hypothetical conserved protein TTC0263; TPR, prote 92.28
4abn_A474 Tetratricopeptide repeat protein 5; P53 cofactor, 91.7
4gyw_A 723 UDP-N-acetylglucosamine--peptide N- acetylglucosam 91.69
3qou_A287 Protein YBBN; thioredoxin-like fold, tetratricopep 91.57
3cv0_A327 Peroxisome targeting signal 1 receptor PEX5; TPR m 91.55
1elr_A131 TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp 91.49
2vsy_A 568 XCC0866; transferase, glycosyl transferase, GT-B, 91.43
3urz_A208 Uncharacterized protein; tetratricopeptide repeats 91.37
3ma5_A100 Tetratricopeptide repeat domain protein; NESG, str 91.27
1na3_A91 Designed protein CTPR2; de novo protein; HET: IPT; 91.2
1p5q_A336 FKBP52, FK506-binding protein 4; isomerase; 2.80A 91.16
1rz4_A226 Eukaryotic translation initiation factor 3 subuni; 90.86
3qww_A433 SET and MYND domain-containing protein 2; methyltr 90.85
3qww_A433 SET and MYND domain-containing protein 2; methyltr 90.55
3qwp_A429 SET and MYND domain-containing protein 3; SMYD3,SE 90.34
2hr2_A159 Hypothetical protein; alpha-alpha superhelix fold, 90.25
3qwp_A429 SET and MYND domain-containing protein 3; SMYD3,SE 89.97
2if4_A338 ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, 89.82
2v5f_A104 Prolyl 4-hydroxylase subunit alpha-1; endoplasmic 89.78
1w3b_A388 UDP-N-acetylglucosamine--peptide N-acetylglucosami 89.73
1w3b_A 388 UDP-N-acetylglucosamine--peptide N-acetylglucosami 89.58
2kat_A115 Uncharacterized protein; NESG, structure, structur 89.54
2xev_A129 YBGF; tetratricopeptide, alpha-helical, metal bind 89.45
2vsy_A 568 XCC0866; transferase, glycosyl transferase, GT-B, 88.96
4abn_A474 Tetratricopeptide repeat protein 5; P53 cofactor, 88.91
4gyw_A 723 UDP-N-acetylglucosamine--peptide N- acetylglucosam 88.89
4g1t_A 472 Interferon-induced protein with tetratricopeptide 88.76
2vyi_A131 SGTA protein; chaperone, TPR repeat, phosphoprotei 88.65
2kc7_A99 BFR218_protein; tetratricopeptide repeat, all-alph 88.42
2r5s_A176 Uncharacterized protein VP0806; APC090868.1, vibri 88.24
3upv_A126 Heat shock protein STI1; TPR-fold, adaptor protein 87.9
1kt0_A457 FKBP51, 51 kDa FK506-binding protein; FKBP-like pp 87.7
1wao_1 477 Serine/threonine protein phosphatase 5; hydrolase, 87.57
1xn7_A78 Hypothetical protein YHGG; alpha+beta, GFT structu 87.43
3sz7_A164 HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G 87.38
1na3_A91 Designed protein CTPR2; de novo protein; HET: IPT; 87.11
3k9i_A117 BH0479 protein; putative protein binding protein, 86.9
3rkv_A162 Putative peptidylprolyl isomerase; structural geno 86.89
4f3v_A282 ESX-1 secretion system protein ECCA1; tetratricope 86.81
1ub9_A100 Hypothetical protein PH1061; helix-turn-helix moti 86.79
1qgp_A77 Protein (double stranded RNA adenosine deaminase); 86.66
3ma5_A100 Tetratricopeptide repeat domain protein; NESG, str 86.65
2fbn_A198 70 kDa peptidylprolyl isomerase, putative; sulfur 86.63
2pzi_A681 Probable serine/threonine-protein kinase PKNG; ATP 86.55
2kck_A112 TPR repeat; tetratricopeptide repeat, structural g 86.32
4gco_A126 Protein STI-1; structural genomics, PSI-biology, m 86.1
4g1t_A472 Interferon-induced protein with tetratricopeptide 86.04
4gcn_A127 Protein STI-1; structural genomics, PSI-biology, m 86.02
3qou_A287 Protein YBBN; thioredoxin-like fold, tetratricopep 85.87
1ouv_A273 Conserved hypothetical secreted protein; TPR repea 85.77
1elw_A118 TPR1-domain of HOP; HOP, TPR-domain, peptide-compl 85.69
2k02_A87 Ferrous iron transport protein C; FEOC, iron-sulfu 85.61
2kc7_A99 BFR218_protein; tetratricopeptide repeat, all-alph 85.35
2xcb_A142 PCRH, regulatory protein PCRH; protein transport, 85.11
1na0_A125 Designed protein CTPR3; de novo protein; HET: IPT; 85.09
1qbj_A81 Protein (double-stranded RNA specific adenosine D 84.92
2vgx_A148 Chaperone SYCD; alternative dimer assembly, tetrat 84.68
1ihg_A370 Cyclophilin 40; ppiase immunophilin tetratricopept 84.39
3r0a_A123 Putative transcriptional regulator; structural gen 84.34
4b8x_A147 SCO5413, possible MARR-transcriptional regulator; 83.9
1sfx_A109 Conserved hypothetical protein AF2008; structural 83.87
2lni_A133 Stress-induced-phosphoprotein 1; structural genomi 83.44
2ond_A308 Cleavage stimulation factor 77 kDa subunit; HAT do 83.31
2dba_A148 Smooth muscle cell associated protein-1, isoform 2 83.06
2kat_A115 Uncharacterized protein; NESG, structure, structur 82.41
1wao_1 477 Serine/threonine protein phosphatase 5; hydrolase, 81.98
4b4t_T274 26S proteasome regulatory subunit RPN12; hydrolase 81.11
3ffl_A167 Anaphase-promoting complex subunit 7; tetratricope 80.88
2l6j_A111 TPR repeat-containing protein associated with HSP; 80.82
2r5s_A176 Uncharacterized protein VP0806; APC090868.1, vibri 80.27
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} Back     alignment and structure
Probab=100.00  E-value=2.6e-61  Score=492.82  Aligned_cols=333  Identities=19%  Similarity=0.277  Sum_probs=266.9

Q ss_pred             HHHHHHHHHhCCCC--hHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHhhhcHHHHHHHHhhchhccCCCCCch
Q 015984           56 QLLQTFAQELGRLE--PETQKEIANYTLAQIQPRVVSFEEQVLIIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDD  133 (397)
Q Consensus        56 ~~~~~~~~~l~~l~--~~~~~~~~~~~l~~~~~~~~~~e~q~~~l~~~La~~~e~~~d~~~Aa~~L~~i~~et~~~~~~~  133 (397)
                      .++..++..+.+.|  +...+.-+..++.+++++++++|.+++|++.+||++|++.|+|.+|+++|+++++|| ++.++.
T Consensus        95 ~~V~~~~~~l~~~~~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et-~~~~~~  173 (445)
T 4b4t_P           95 YMIQKVMEYLKSSKSLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVET-YGSMEM  173 (445)
T ss_dssp             HHHHHHHHHHHHHCTTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CSSSCH
T ss_pred             HHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH-HhcccH
Confidence            45555666665544  223344555677788999999999999999999999999999999999999999999 788999


Q ss_pred             hHHHHHHHHHHHHHhhcCChHHHHHHHHHhccccc-CcchHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhcC
Q 015984          134 TFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVS-SSQQEVLNLQYKVCYARILDLKRKFLEAALRYYDISQIQKRQIG  212 (397)
Q Consensus       134 ~~kle~~L~i~Rl~L~~~d~~~A~~~l~ka~~~~~-~~~~~~l~~~~~~~~~~~~~~~r~f~~Aa~~y~e~~~~~~~~~~  212 (397)
                      .+|++++++++|+|++.+||++|+.+++|++...+ ..++|+++++|+.|+|++++++++|.+|+++|+++|.++..   
T Consensus       174 ~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~~~~---  250 (445)
T 4b4t_P          174 SEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQTDAI---  250 (445)
T ss_dssp             HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH---
T ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcccc---
Confidence            99999999999999999999999999999987665 44789999999999999999999999999999999998752   


Q ss_pred             CCCCCHHHHHHHHHHHHHHHHhcCCCCcchHHHHhhhhchhhccccchHHHHHHHHH-hhcChhhHH-HHHHHhchhhhh
Q 015984          213 DETIDEEALEQALSAAVTCTILAAAGPQRSRVLATLYKDERCSKLKIYPILQKVYLE-RILRKPEID-AFAEELKPHQKA  290 (397)
Q Consensus       213 ~~~~~~~~~~~~L~~av~~~ILa~~~~~rs~ll~~l~~d~~~~~l~~~~~L~k~f~~-~ii~~~~l~-~F~~~L~~h~~~  290 (397)
                        ..++..+..+|+++++|.||+|++|+|+++++++++|++++++|.|+.|.++|.+ ++++|+.+. .|...|.+|+.+
T Consensus       251 --~~d~~~~~~~L~~~v~~~iLa~~~~~~~~ll~~~~~~~~~~~l~~~~~L~k~f~~~~L~~~~~~~~~~~~~L~~~~~~  328 (445)
T 4b4t_P          251 --KSDEAKWKPVLSHIVYFLVLSPYGNLQNDLIHKIQNDNNLKKLESQESLVKLFTTNELMRWPIVQKTYEPVLNEDDLA  328 (445)
T ss_dssp             --HSCHHHHHHHHHHHHHHHHHSSCSSTTHHHHHSHHHHSSCHHHHHHHHHHHHHHHCCSSSHHHHHHHTCSSTTTCCSS
T ss_pred             --cCCHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHhhcccccccHHHHHHHHHHHhchHhhhHHHHHHHHHHhcccchh
Confidence              3467788999999999999999999999999999999999999999999999975 566776654 677778888776


Q ss_pred             hCCCc----hhhHHHHHHHHHHHHHHhhccccCHHHHHHHhCCChHHHHHHHHHhHhcCceEEEeccCCcEEEECCc---
Q 015984          291 LLPDN----FTVLDRAMIEHNLLSASKLYTNISFEELGTLLGIAPQKAEKIASRMIFEDRMRGSIDQVEAVIHFEDD---  363 (397)
Q Consensus       291 ~~~d~----~~~L~~~v~EhNl~~is~~Y~~Isl~~La~ll~ls~~~~E~~ls~mI~~grl~gkIDQv~giV~f~~~---  363 (397)
                      ...++    ++.|+++|+|||++++++||++|+|++||++||+|++++|..+++||.+|+|+|+|||++|+|+|+++   
T Consensus       329 ~~~~~~~~~~~~L~~~v~ehnl~~i~k~Ys~I~l~~la~lL~l~~~evE~~ls~mI~~g~i~akIDq~~giV~F~~~~~~  408 (445)
T 4b4t_P          329 FGGEANKHHWEDLQKRVIEHNLRVISEYYSRITLLRLNELLDLTESQTETYISDLVNQGIIYAKVNRPAKIVNFEKPKNS  408 (445)
T ss_dssp             CCCSCSSHHHHHHHHHHHHHHHHHHHHHEEEEEHHHHHHHHTSCHHHHHHHHHHHHHHTSSCCEEETTTTEEEC------
T ss_pred             hhcchhhHHHHHHHHHHHHHHHHHHHHHhceeeHHHHHHHhCcCHHHHHHHHHHHHHCCCEEEEEcCCCCEEEECCCCCh
Confidence            55443    58999999999999999999999999999999999999999999999999999999999999999974   


Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 015984          364 TEELQQWDQQIVGLCQALNDILDSMAKKGLP  394 (397)
Q Consensus       364 ~~~l~~w~~~I~~l~~~v~~v~~~i~~~~~~  394 (397)
                      ++.+++|+.+|+++|+.|++++|+|+||+|-
T Consensus       409 ~~~l~~W~~~i~~l~~~v~k~~~lI~kE~m~  439 (445)
T 4b4t_P          409 SQLLNEWSHNVDELLEHIETIGHLITKEEIM  439 (445)
T ss_dssp             -------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5789999999999999999999999999985
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A Back     alignment and structure
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} Back     alignment and structure
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} Back     alignment and structure
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} Back     alignment and structure
>4b4t_O 26S proteasome regulatory subunit RPN9; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} Back     alignment and structure
>1ufm_A COP9 complex subunit 4; helix-turn-helix, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Mus musculus} SCOP: a.4.5.47 Back     alignment and structure
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens} Back     alignment and structure
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae} Back     alignment and structure
>3chm_A COP9 signalosome complex subunit 7; heat/ARM repeats, winged helix motif, developmental protein, phosphoprotein; 1.50A {Arabidopsis thaliana} Back     alignment and structure
>4b0z_A RPN12, 26S proteasome regulatory subunit RPN12; protein binding, proteasome ubitquitin; HET: SGM GOL; 1.58A {Schizosaccharomyces pombe} Back     alignment and structure
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} Back     alignment and structure
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} Back     alignment and structure
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A Back     alignment and structure
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Back     alignment and structure
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} Back     alignment and structure
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Back     alignment and structure
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} Back     alignment and structure
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Back     alignment and structure
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Back     alignment and structure
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Back     alignment and structure
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} Back     alignment and structure
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Back     alignment and structure
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A Back     alignment and structure
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} Back     alignment and structure
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} Back     alignment and structure
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 Back     alignment and structure
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A Back     alignment and structure
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} Back     alignment and structure
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* Back     alignment and structure
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} Back     alignment and structure
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} Back     alignment and structure
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A Back     alignment and structure
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} Back     alignment and structure
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} Back     alignment and structure
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A Back     alignment and structure
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} Back     alignment and structure
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Back     alignment and structure
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} Back     alignment and structure
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} Back     alignment and structure
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Back     alignment and structure
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Back     alignment and structure
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 Back     alignment and structure
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Back     alignment and structure
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Back     alignment and structure
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Back     alignment and structure
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Back     alignment and structure
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A Back     alignment and structure
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} Back     alignment and structure
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} Back     alignment and structure
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 Back     alignment and structure
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} Back     alignment and structure
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} Back     alignment and structure
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* Back     alignment and structure
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Back     alignment and structure
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} Back     alignment and structure
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 Back     alignment and structure
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A Back     alignment and structure
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 Back     alignment and structure
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Back     alignment and structure
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* Back     alignment and structure
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Back     alignment and structure
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 Back     alignment and structure
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Back     alignment and structure
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Back     alignment and structure
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} Back     alignment and structure
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B Back     alignment and structure
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Back     alignment and structure
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} Back     alignment and structure
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Back     alignment and structure
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} Back     alignment and structure
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} Back     alignment and structure
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Back     alignment and structure
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Back     alignment and structure
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Back     alignment and structure
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Back     alignment and structure
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 Back     alignment and structure
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Back     alignment and structure
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Back     alignment and structure
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A Back     alignment and structure
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Back     alignment and structure
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Back     alignment and structure
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} Back     alignment and structure
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Back     alignment and structure
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Back     alignment and structure
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Back     alignment and structure
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B Back     alignment and structure
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Back     alignment and structure
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Back     alignment and structure
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A Back     alignment and structure
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Back     alignment and structure
>1wi9_A Protein C20ORF116 homolog; helix-turn-helix motif, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.4.5.47 Back     alignment and structure
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Back     alignment and structure
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Back     alignment and structure
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A Back     alignment and structure
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Back     alignment and structure
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} Back     alignment and structure
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Back     alignment and structure
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A Back     alignment and structure
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Back     alignment and structure
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Back     alignment and structure
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Back     alignment and structure
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} Back     alignment and structure
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Back     alignment and structure
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Back     alignment and structure
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Back     alignment and structure
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Back     alignment and structure
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Back     alignment and structure
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Back     alignment and structure
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 Back     alignment and structure
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A Back     alignment and structure
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Back     alignment and structure
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A Back     alignment and structure
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} Back     alignment and structure
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Back     alignment and structure
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Back     alignment and structure
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Back     alignment and structure
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Back     alignment and structure
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Back     alignment and structure
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A Back     alignment and structure
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Back     alignment and structure
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Back     alignment and structure
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Back     alignment and structure
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Back     alignment and structure
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* Back     alignment and structure
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* Back     alignment and structure
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Back     alignment and structure
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A Back     alignment and structure
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Back     alignment and structure
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Back     alignment and structure
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Back     alignment and structure
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A Back     alignment and structure
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A Back     alignment and structure
>1rz4_A Eukaryotic translation initiation factor 3 subuni; heat analogous motif, winged-helix, biosynthetic protein; 2.10A {Homo sapiens} SCOP: a.4.5.53 a.118.1.18 Back     alignment and structure
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* Back     alignment and structure
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* Back     alignment and structure
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* Back     alignment and structure
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 Back     alignment and structure
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* Back     alignment and structure
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} Back     alignment and structure
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A Back     alignment and structure
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Back     alignment and structure
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Back     alignment and structure
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Back     alignment and structure
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} Back     alignment and structure
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Back     alignment and structure
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Back     alignment and structure
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* Back     alignment and structure
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Back     alignment and structure
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 Back     alignment and structure
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} Back     alignment and structure
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} Back     alignment and structure
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} Back     alignment and structure
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A Back     alignment and structure
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 Back     alignment and structure
>1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} SCOP: a.4.5.62 Back     alignment and structure
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} Back     alignment and structure
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A Back     alignment and structure
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Back     alignment and structure
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} Back     alignment and structure
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} Back     alignment and structure
>1ub9_A Hypothetical protein PH1061; helix-turn-helix motif, winged helix motif, structural genom transcription; 2.05A {Pyrococcus horikoshii} SCOP: a.4.5.28 Back     alignment and structure
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19 Back     alignment and structure
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Back     alignment and structure
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 Back     alignment and structure
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} Back     alignment and structure
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Back     alignment and structure
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} Back     alignment and structure
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Back     alignment and structure
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} Back     alignment and structure
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* Back     alignment and structure
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 Back     alignment and structure
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 Back     alignment and structure
>2k02_A Ferrous iron transport protein C; FEOC, iron-sulfur, metal-binding, metal binding protein; NMR {Klebsiella pneumoniae subsp} Back     alignment and structure
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} Back     alignment and structure
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Back     alignment and structure
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Back     alignment and structure
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A Back     alignment and structure
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Back     alignment and structure
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A Back     alignment and structure
>3r0a_A Putative transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.31A {Methanosarcina mazei} Back     alignment and structure
>4b8x_A SCO5413, possible MARR-transcriptional regulator; winged helix motif; HET: CME; 1.25A {Streptomyces coelicolor} Back     alignment and structure
>1sfx_A Conserved hypothetical protein AF2008; structural genomics, HTH MOT protein structure initiative, midwest center for structural genomics; 1.55A {Archaeoglobus fulgidus} SCOP: a.4.5.50 Back     alignment and structure
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} Back     alignment and structure
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 Back     alignment and structure
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Back     alignment and structure
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 Back     alignment and structure
>4b4t_T 26S proteasome regulatory subunit RPN12; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} Back     alignment and structure
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} Back     alignment and structure
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} Back     alignment and structure
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 397
d1ufma_84 a.4.5.47 (A:) COP9 signalosome complex subunit 4, 8e-20
>d1ufma_ a.4.5.47 (A:) COP9 signalosome complex subunit 4, GSN4 {Mouse (Mus musculus) [TaxId: 10090]} Length = 84 Back     information, alignment and structure

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: PCI domain (PINT motif)
domain: COP9 signalosome complex subunit 4, GSN4
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 81.0 bits (200), Expect = 8e-20
 Identities = 45/66 (68%), Positives = 54/66 (81%)

Query: 297 TVLDRAMIEHNLLSASKLYTNISFEELGTLLGIAPQKAEKIASRMIFEDRMRGSIDQVEA 356
           ++LDRA+IEHNLLSASKLY NI+FEELG LL I   KAEKIAS+MI E RM G IDQ++ 
Sbjct: 10  SILDRAVIEHNLLSASKLYNNITFEELGALLEIPAAKAEKIASQMITEGRMNGFIDQIDG 69

Query: 357 VIHFED 362
           ++HFE 
Sbjct: 70  IVHFET 75

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query397
d1ufma_84 COP9 signalosome complex subunit 4, GSN4 {Mouse (M 99.81
d1qqea_290 Vesicular transport protein sec17 {Baker's yeast ( 97.41
d1qqea_290 Vesicular transport protein sec17 {Baker's yeast ( 96.04
d1hz4a_366 Transcription factor MalT domain III {Escherichia 95.5
d1elra_128 Hop {Human (Homo sapiens) [TaxId: 9606]} 95.49
d1hxia_112 Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 95.4
d1a17a_159 Protein phosphatase 5 {Human (Homo sapiens) [TaxId 95.29
d1xnfa_259 Lipoprotein NlpI {Escherichia coli [TaxId: 562]} 95.13
d2c2la1201 STIP1 homology and U box-containing protein 1, STU 95.08
d1hz4a_366 Transcription factor MalT domain III {Escherichia 95.01
d1elwa_117 Hop {Human (Homo sapiens) [TaxId: 9606]} 94.83
d1p5qa1170 FKBP52 (FKBP4), C-terminal domain {Human (Homo sap 94.79
d1w3ba_ 388 O-GlcNAc transferase p110 subunit, OGT {Human (Hom 94.44
d1wi9a_72 Hypothetical protein C20orf116 homolog {Mouse (Mus 94.35
d1w3ba_388 O-GlcNAc transferase p110 subunit, OGT {Human (Hom 94.07
d1fcha_323 Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 93.44
d1hh8a_192 Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H 93.42
d1kt1a1168 FKBP51, C-terminal domain {Monkey (Saimiri bolivie 93.38
d1kt1a1168 FKBP51, C-terminal domain {Monkey (Saimiri bolivie 92.73
d2hr2a1156 Hypothetical protein CT2138 {Chlorobium tepidum [T 92.24
d1p5qa1170 FKBP52 (FKBP4), C-terminal domain {Human (Homo sap 92.1
d2fbna1153 Putative 70 kda peptidylprolyl isomerase PFL2275c 91.64
d1fcha_323 Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 91.27
d1tjca_95 Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human 91.17
d1dpua_69 C-terminal domain of RPA32 {Human (Homo sapiens) [ 91.15
d1xnfa_259 Lipoprotein NlpI {Escherichia coli [TaxId: 562]} 91.11
d2cfxa163 Transcriptional regulator LrpC {Bacillus subtilis 90.8
d1ihga1169 Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} 90.28
d2fbna1153 Putative 70 kda peptidylprolyl isomerase PFL2275c 89.09
d1a17a_159 Protein phosphatase 5 {Human (Homo sapiens) [TaxId 88.52
d1tjca_95 Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human 88.51
d1z05a171 Transcriptional regulator VC2007 N-terminal domain 88.37
d2cg4a163 Regulatory protein AsnC {Escherichia coli [TaxId: 88.28
d1ub9a_100 Hypothetical protein PH1061 {Archaeon Pyrococcus h 88.21
d1elwa_117 Hop {Human (Homo sapiens) [TaxId: 9606]} 87.83
d1i1ga160 LprA {Archaeon Pyrococcus furiosus [TaxId: 2261]} 86.56
d1z6ra170 Mlc protein N-terminal domain {Escherichia coli [T 86.29
d1ihga1169 Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} 86.22
d2cyya160 Putative transcriptional regulator PH1519 {Archaeo 84.98
d1nzna_122 Mitochondria fission protein Fis1 {Human (Homo sap 84.95
d1hh8a_192 Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H 84.26
d1sfxa_109 Hypothetical protein AF2008 {Archaeoglobus fulgidu 83.76
d1jgsa_138 Multiple antibiotic resistance repressor, MarR {Es 83.0
d1nzna_122 Mitochondria fission protein Fis1 {Human (Homo sap 81.07
>d1ufma_ a.4.5.47 (A:) COP9 signalosome complex subunit 4, GSN4 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: PCI domain (PINT motif)
domain: COP9 signalosome complex subunit 4, GSN4
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.81  E-value=8.8e-21  Score=147.01  Aligned_cols=72  Identities=63%  Similarity=0.914  Sum_probs=69.1

Q ss_pred             CCCchhhHHHHHHHHHHHHHHhhccccCHHHHHHHhCCChHHHHHHHHHhHhcCceEEEeccCCcEEEECCc
Q 015984          292 LPDNFTVLDRAMIEHNLLSASKLYTNISFEELGTLLGIAPQKAEKIASRMIFEDRMRGSIDQVEAVIHFEDD  363 (397)
Q Consensus       292 ~~d~~~~L~~~v~EhNl~~is~~Y~~Isl~~La~ll~ls~~~~E~~ls~mI~~grl~gkIDQv~giV~f~~~  363 (397)
                      +.+|++.|+++|+||||++++++|++|+|++||++|++|++++|..+++||.+|+|+|+|||++|+|+|+.+
T Consensus         5 ~~~~~t~L~~~i~Ehni~~is~~Y~~Isl~~la~~l~l~~~evE~~l~~mI~~~~i~akIDq~~g~V~F~~~   76 (84)
T d1ufma_           5 SSGGSSILDRAVIEHNLLSASKLYNNITFEELGALLEIPAAKAEKIASQMITEGRMNGFIDQIDGIVHFETR   76 (84)
T ss_dssp             CCCSSCCCCHHHHHHHHHHHHHSCSEEEHHHHHHHTTSCHHHHHHHHHHHHHTTSSCEEEETTTTEEEECCS
T ss_pred             ccchhHHHHHHHHHHHHHHHHHhhceeeHHHHHHHHCCCHHHHHHHHHHHHhcCeEEEEEeCCCCEEEECCC
Confidence            356789999999999999999999999999999999999999999999999999999999999999999874
>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} Back     information, alignment and structure
>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wi9a_ a.4.5.47 (A:) Hypothetical protein C20orf116 homolog {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} Back     information, alignment and structure
>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} Back     information, alignment and structure
>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} Back     information, alignment and structure
>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} Back     information, alignment and structure
>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1dpua_ a.4.5.16 (A:) C-terminal domain of RPA32 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2cfxa1 a.4.5.32 (A:1-63) Transcriptional regulator LrpC {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} Back     information, alignment and structure
>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1z05a1 a.4.5.63 (A:10-80) Transcriptional regulator VC2007 N-terminal domain {Vibrio cholerae [TaxId: 666]} Back     information, alignment and structure
>d2cg4a1 a.4.5.32 (A:4-66) Regulatory protein AsnC {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1ub9a_ a.4.5.28 (A:) Hypothetical protein PH1061 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure
>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1i1ga1 a.4.5.32 (A:2-61) LprA {Archaeon Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d1z6ra1 a.4.5.63 (A:12-81) Mlc protein N-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d2cyya1 a.4.5.32 (A:5-64) Putative transcriptional regulator PH1519 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure
>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1sfxa_ a.4.5.50 (A:) Hypothetical protein AF2008 {Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1jgsa_ a.4.5.28 (A:) Multiple antibiotic resistance repressor, MarR {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure