Citrus Sinensis ID: 015986

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------

MAEKMVKSSSITRWVSLFMFVVAHLASSILAEDGLVANGDFETSPSHGFPSESIADGPTEIPSWKLNGTVELVSSGQKQGGMILIVPQGSHAVRLGNDAEISQEVKVEKGSTYSVTFSAARTCAQLESLNVSVPPASQTIDLQTLYNVQGWDPYAWAFEAEDDNVKLLFKNPGMEDDPTCGPIIDDIAIKKLFAPDKPKDNAVDNGDFEEGPWMFRNVSLGVLLPTNLDEETSSLPGWIVESNRAVRYIDSYHYSVPQGKRAIELLSGKEGIISQMVETMANKDYSLTFSLGHAGDKCKQPLAVMAFAGDQAQIVHYTEDANSTFHDANVNFTAKADRTRIAFYSVYYNTRTDDMSSLCGPVVDDVRVWFSGSSRIVFGQLGLGLGVGFWLLVLVLF

cccccccccHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccEEEEEEEEEccccccccEEEEcccccEEEEcccccEEEEEEEEccccEEEEEEEEcccccccccEEEEEcccccEEEEEEEccccccEEEEEEEEEEcccEEEEEccccccccccccccccEEEEEcccccccccccccccccccccccccccccccEEcccccccccccccccEEEEccEEEEEcccccccccccEEEEEccccccEEEEEEEcccccEEEEEEEcccccccccccEEEEEEEEccEEEEEEEccccccEEEEEEEEEEccccEEEEEEEccccccccccccccccEEEEEEEEEccccHHHHHHHHHHHHHHHHHHHHHHc

cHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccEEcccccccccEEEEEEEEEccccccccEEEEEccccEEEEEccccEEEEEEEEEcccEEEEEEEcccccccccEEEEEEcccccEEEEEEEEcccccccEEEEEEEEccEEEEEEEcccccccccccccEccEEEEEcccccccccccccccccccccccccccccEEEccccccccccccccEEEEcccEEEEEcccccccccccEEEEEEcccHHHEEEEEEEccccEEEEEEEEEcccccccccEEEEEEEccccEEEEEEEcccccEEEEEEEEEEEcccEEEEEEEEEEcccccccccccccEEccEEEEEccccccccHHHHHHHHHHHHHHHHHHc

maekmvksssITRWVSLFMFVVAHLASSIlaedglvangdfetspshgfpsesiadgpteipswklngTVELVssgqkqggmilivpqgshavrlgndaeisqevkvekgstysvTFSAARTCAQLEslnvsvppasqtidlqtlynvqgwdpyawafeaeddNVKLlfknpgmeddptcgpiiddiaikklfapdkpkdnavdngdfeegpwmfrnvslgvllptnldeetsslpgwivesnravryidsyhysvpqGKRAIELLSGKEGIISQMVETMANkdysltfslghagdkckqpLAVMAFAGDQAQIVHYtedanstfhdanvnftakadRTRIAFYSVYYNtrtddmsslcgpvvddvRVWFSGSSRIVFGQLGLGLGVGFWLLVLVLF

maekmvksssitRWVSLFMFVVAHLASSILAEDGLVANGDFETSPSHGFPSESIADGPTEIPSWKLNGTVELVSSGQKQGGMILIVPQGSHAVRLGNDAEISQEVKVEKGSTYSVTFSAARTCAQLESLNVSVPPASQTIDLQTLYNVQGWDPYAWAFEAEDDNVKLLFKNPGMEDDPTCGPIIDDIAIKKLFAPDKPKDNAVDNGDFEEGPWMFRNVSLGVLLPTNLDEETSSLPGWIVESNRAVRYIDSYHYSVPQGKRAIELLSGKEGIISQMVETMANKDYSLTFSLGHAGDKCKQPLAVMAFAGDQAQIVHYTEDANSTFHDANvnftakadrtrIAFYSVYYNTRTDDMSSLCGPVVDDVRVWFSGSSRIVFGQLGLGLGVGFWLLVLVLF

**********ITRWVSLFMFVVAHLASSILAEDGLVANG************************WKLNGTVELVSSGQKQGGMILIVPQGSHAVRLGNDAEISQEVKVEKGSTYSVTFSAARTCAQLESLNVSVPPASQTIDLQTLYNVQGWDPYAWAFEAEDDNVKLLFKNPGMEDDPTCGPIIDDIAIKKLFAP********DNGDFEEGPWMFRNVSLGVLLPTNLDEETSSLPGWIVESNRAVRYIDSYHYSVPQGKRAIELLSGKEGIISQMVETMANKDYSLTFSLGHAGDKCKQPLAVMAFAGDQAQIVHYTEDANSTFHDANVNFTAKADRTRIAFYSVYYNTRTDDMSSLCGPVVDDVRVWFSGSSRIVFGQLGLGLGVGFWLLVLVL*

***********TRWVSLFMFVVAHLASSILAEDGLVANGDFETSPSHGFPSESIADGPTEIPSWKLNGTVELVSSGQKQGGMILIVPQGSHAVRLGNDAEISQEVKVEKGSTYSVTFSAARTCAQLESLNVSVPPASQTIDLQTLYNVQGWDPYAWAFEAEDDNVKLLFKNPGMEDDPTCGPIIDDIAIKKLFAPDKPKDNAVDNGDFEEGPWMFRNVSLGVLLPTNLDEETSSLPGWIVESNRAVRYIDSYHYSVPQGKRAIELLSGKEGIISQMVETMANKDYSLTFSLGHAG******LAVMAFAGDQAQIVHYTEDANSTFHDANVNFTAKADRTRIAFYSVYYNTRTDDMSSLCGPVVDDVRVWFSGSSRIVFGQLGLGLGVGFWLLVLVLF

*********SITRWVSLFMFVVAHLASSILAEDGLVANGDFETSPSHGFPSESIADGPTEIPSWKLNGTVELVSSGQKQGGMILIVPQGSHAVRLGNDAEISQEVKVEKGSTYSVTFSAARTCAQLESLNVSVPPASQTIDLQTLYNVQGWDPYAWAFEAEDDNVKLLFKNPGMEDDPTCGPIIDDIAIKKLFAPDKPKDNAVDNGDFEEGPWMFRNVSLGVLLPTNLDEETSSLPGWIVESNRAVRYIDSYHYSVPQGKRAIELLSGKEGIISQMVETMANKDYSLTFSLGHAGDKCKQPLAVMAFAGDQAQIVHYTEDANSTFHDANVNFTAKADRTRIAFYSVYYNTRTDDMSSLCGPVVDDVRVWFSGSSRIVFGQLGLGLGVGFWLLVLVLF

*******SSSITRWVSLFMFVVAHLASSILAEDGLVANGDFETSPSHGFPSESIADGPTEIPSWKLNGTVELVSSGQKQGGMILIVPQGSHAVRLGNDAEISQEVKVEKGSTYSVTFSAARTCAQLESLNVSVPPASQTIDLQTLYNVQGWDPYAWAFEAEDDNVKLLFKNPGMEDDPTCGPIIDDIAIKKLFAPDKPKDNAVDNGDFEEGPWMFRNVSLGVLLPTNLDEETSSLPGWIVESNRAVRYIDSYHYSVPQGKRAIELLSGKEGIISQMVETMANKDYSLTFSLGHAGDKCKQPLAVMAFAGDQAQIVHYTEDANSTFHDANVNFTAKADRTRIAFYSVYYNTRTDDMSSLCGPVVDDVRVWFSGSSRIVFGQLGLGLGVGFWLLVLVLF

ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHi

iiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHi

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SSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHooo

SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHi

SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		397
255557319		393	conserved hypothetical protein [Ricinus	0.987	0.997	0.811	0.0
118486479		393	unknown [Populus trichocarpa]	0.937	0.946	0.817	0.0
356555534		393	PREDICTED: uncharacterized protein LOC10	0.931	0.941	0.800	1e-178
388521347		395	unknown [Lotus japonicus]	0.949	0.954	0.790	1e-177
225444537		394	PREDICTED: uncharacterized protein LOC10	0.984	0.992	0.75	1e-177
297740685		392	unnamed protein product [Vitis vinifera]	0.982	0.994	0.751	1e-177
356549095		393	PREDICTED: uncharacterized protein LOC10	0.924	0.933	0.798	1e-175
449433631		394	PREDICTED: uncharacterized protein LOC10	0.987	0.994	0.781	1e-174
357447333		598	Glutamate-gated kainate-type ion channel	0.937	0.622	0.782	1e-173
357447335		393	hypothetical protein MTR_2g019600 [Medic	0.937	0.946	0.782	1e-173

>gi\|255557319\|ref\|XP_002519690.1\| conserved hypothetical protein [Ricinus communis] gi\|223541107\|gb\|EEF42663.1\| conserved hypothetical protein [Ricinus communis]	Back alignment and taxonomy information

 Score =  669 bits (1725), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 318/392 (81%), Positives = 350/392 (89%)

Query: 5   MVKSSSITRWVSLFMFVVAHLASSILAEDGLVANGDFETSPSHGFPSESIADGPTEIPSW 64
           MV+SS+ ++W +  + + A  AS+   EDGLV NG FET PS+GFPSE+IADGP+EIPSW
Sbjct: 1   MVQSSTRSKWFTSSIILFALFASATFGEDGLVTNGGFETPPSNGFPSEAIADGPSEIPSW 60

Query: 65  KLNGTVELVSSGQKQGGMILIVPQGSHAVRLGNDAEISQEVKVEKGSTYSVTFSAARTCA 124
           KLNGTVELVSSGQKQGGMILIVP G HAVRLGNDAEISQE+ VEKGS YS+TFSAARTCA
Sbjct: 61  KLNGTVELVSSGQKQGGMILIVPGGKHAVRLGNDAEISQELTVEKGSIYSITFSAARTCA 120

Query: 125 QLESLNVSVPPASQTIDLQTLYNVQGWDPYAWAFEAEDDNVKLLFKNPGMEDDPTCGPII 184
           QLESLNVSVP ASQTIDLQT+YNVQGWDPYAWAFEAE+D V L+F+NPGMEDDPTCGPII
Sbjct: 121 QLESLNVSVPSASQTIDLQTVYNVQGWDPYAWAFEAEEDKVNLVFRNPGMEDDPTCGPII 180

Query: 185 DDIAIKKLFAPDKPKDNAVDNGDFEEGPWMFRNVSLGVLLPTNLDEETSSLPGWIVESNR 244
           DDIAIKKLFAPDKPKDNAV NGD EEGPWMFRNVSLG+LLPTNLDEET+ LPGWIVESNR
Sbjct: 181 DDIAIKKLFAPDKPKDNAVMNGDLEEGPWMFRNVSLGILLPTNLDEETTPLPGWIVESNR 240

Query: 245 AVRYIDSYHYSVPQGKRAIELLSGKEGIISQMVETMANKDYSLTFSLGHAGDKCKQPLAV 304
           AVRYIDSYH+SVP+GKRAIELLSGKEGIISQMVET  NK Y+L+F+LGHA DKCK PLAV
Sbjct: 241 AVRYIDSYHFSVPEGKRAIELLSGKEGIISQMVETTPNKAYTLSFALGHADDKCKPPLAV 300

Query: 305 MAFAGDQAQIVHYTEDANSTFHDANVNFTAKADRTRIAFYSVYYNTRTDDMSSLCGPVVD 364
           M FAGDQAQ VHYT D+NSTF  A++NFTAKA+RTRIAFYSVYYNTRTDDMSSLCGPVVD
Sbjct: 301 MVFAGDQAQNVHYTPDSNSTFQIADLNFTAKAERTRIAFYSVYYNTRTDDMSSLCGPVVD 360

Query: 365 DVRVWFSGSSRIVFGQLGLGLGVGFWLLVLVL 396
            VRVWFS + RI    LGLG+G+ FW+LVLVL
Sbjct: 361 GVRVWFSSARRIAVSGLGLGVGLTFWVLVLVL 392

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|118486479\|gb\|ABK95079.1\| unknown [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|356555534\|ref\|XP_003546086.1\| PREDICTED: uncharacterized protein LOC100807088 [Glycine max]	Back alignment and taxonomy information

>gi\|388521347\|gb\|AFK48735.1\| unknown [Lotus japonicus]	Back alignment and taxonomy information

>gi\|225444537\|ref\|XP_002275370.1\| PREDICTED: uncharacterized protein LOC100253669 [Vitis vinifera]	Back alignment and taxonomy information

>gi\|297740685\|emb\|CBI30867.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|356549095\|ref\|XP_003542933.1\| PREDICTED: uncharacterized protein LOC100788675 [Glycine max]	Back alignment and taxonomy information

>gi\|449433631\|ref\|XP_004134601.1\| PREDICTED: uncharacterized protein LOC101220961 [Cucumis sativus] gi\|449518599\|ref\|XP_004166324.1\| PREDICTED: uncharacterized LOC101220961 [Cucumis sativus]	Back alignment and taxonomy information

>gi\|357447333\|ref\|XP_003593942.1\| Glutamate-gated kainate-type ion channel receptor subunit GluR5 [Medicago truncatula] gi\|355482990\|gb\|AES64193.1\| Glutamate-gated kainate-type ion channel receptor subunit GluR5 [Medicago truncatula]	Back alignment and taxonomy information

>gi\|357447335\|ref\|XP_003593943.1\| hypothetical protein MTR_2g019600 [Medicago truncatula] gi\|355482991\|gb\|AES64194.1\| hypothetical protein MTR_2g019600 [Medicago truncatula]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		397
TAIR\|locus:2198279		407	AT1G29980 [Arabidopsis thalian	0.911	0.889	0.778	3.8e-156
TAIR\|locus:2062321		401	AT2G34510 "AT2G34510" [Arabido	0.869	0.860	0.8	4.1e-152
TAIR\|locus:2127831		365	AT4G32460 "AT4G32460" [Arabido	0.846	0.920	0.511	2.7e-93
TAIR\|locus:2144206		366	AT5G11420 "AT5G11420" [Arabido	0.886	0.961	0.480	1.7e-91
TAIR\|locus:2145457		369	DGR2 "AT5G25460" [Arabidopsis	0.891	0.959	0.481	6.5e-90
TAIR\|locus:2016324		370	DGR1 "AT1G80240" [Arabidopsis	0.899	0.964	0.473	8.3e-90
TAIR\|locus:2054351		370	AT2G41810 "AT2G41810" [Arabido	0.894	0.959	0.441	7.6e-80
TAIR\|locus:2054336		370	AT2G41800 "AT2G41800" [Arabido	0.843	0.905	0.448	4.8e-78
TAIR\|locus:2077467		365	AT3G08030 "AT3G08030" [Arabido	0.881	0.958	0.442	1.5e-76
TAIR\|locus:2174713		383	AT5G14150 "AT5G14150" [Arabido	0.836	0.866	0.322	2e-33

TAIR\|locus:2198279 AT1G29980 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 1522 (540.8 bits), Expect = 3.8e-156, P = 3.8e-156
 Identities = 289/371 (77%), Positives = 320/371 (86%)

Query:    15 VSLFMFVVAHLASSILAEDGLVANGDFETSPSHGFPSESIADGPTEIPSWKLNGTVELVS 74
             VS+ + V      S   EDGLV NGDFETSPS GFP + + DGP++IPSWK NGTVEL++
Sbjct:    20 VSVAVLVAVADDKSPAVEDGLVINGDFETSPSSGFPDDGVTDGPSDIPSWKSNGTVELIN 79

Query:    75 SGQKQGGMILIVPQGSHAVRLGNDAEISQEVKVEKGSTYSVTFSAARTCAQLESLNVSVP 134
             SGQKQGGMILIVPQG HAVRLGNDAEISQ++ VEKG  YSVTFSAARTCAQLES+NVSV 
Sbjct:    80 SGQKQGGMILIVPQGRHAVRLGNDAEISQDLTVEKGFVYSVTFSAARTCAQLESINVSVA 139

Query:   135 P---------ASQTIDLQTLYNVQGWDPYAWAFEAEDDNVKLLFKNPGMEDDPTCGPIID 185
                       AS+ +DLQTLY+VQGWDPYAWAFEAEDD+V+L+FKNPGMEDDPTCGPIID
Sbjct:   140 SVNADADDMLASRNVDLQTLYSVQGWDPYAWAFEAEDDHVRLVFKNPGMEDDPTCGPIID 199

Query:   186 DIAIKKLFAPDKPKDNAVDNGDFEEGPWMFRNVSLGVLLPTNLDEETSSLPGWIVESNRA 245
             DIAIKKLF PDKPKDNAV NGDFE+GPWMFRN SLGVLLPTNLDEE SSLPGW VESNRA
Sbjct:   200 DIAIKKLFTPDKPKDNAVINGDFEDGPWMFRNTSLGVLLPTNLDEEISSLPGWTVESNRA 259

Query:   246 VRYIDSYHYSVPQGKRAIELLSGKEGIISQMVETMANKDYSLTFSLGHAGDKCKQPLAVM 305
             VR++DS H+SVP+GKRA+ELLSGKEGIISQMVET A+K Y L+FSLGHAGDKCK+PLA+M
Sbjct:   260 VRFVDSDHFSVPKGKRAVELLSGKEGIISQMVETKADKPYILSFSLGHAGDKCKEPLAIM 319

Query:   306 AFAGDQAQIVHYTEDANSTFHDANVNFTAKADRTRIAFYSVYYNTRTDDMSSLCGPVVDD 365
             AFAGDQAQ  HY   ANS+F  A +NFTAKADRTR+AFYSVYYNTRTDDMSSLCGPV+DD
Sbjct:   320 AFAGDQAQNFHYMAQANSSFEKAGLNFTAKADRTRVAFYSVYYNTRTDDMSSLCGPVIDD 379

Query:   366 VRVWFSGSSRI 376
             VRVWFSGS RI
Sbjct:   380 VRVWFSGSKRI 390

GO:0005576 "extracellular region" evidence=ISM

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0031225 "anchored to membrane" evidence=TAS

GO:0005886 "plasma membrane" evidence=IDA

TAIR\|locus:2062321 AT2G34510 "AT2G34510" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2127831 AT4G32460 "AT4G32460" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2144206 AT5G11420 "AT5G11420" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2145457 DGR2 "AT5G25460" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2016324 DGR1 "AT1G80240" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2054351 AT2G41810 "AT2G41810" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2054336 AT2G41800 "AT2G41800" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2077467 AT3G08030 "AT3G08030" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2174713 AT5G14150 "AT5G14150" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		397
PLN03089		373	PLN03089, PLN03089, hypothetical protein; Provisio	0.0
pfam04862		323	pfam04862, DUF642, Protein of unknown function, DU	1e-180
TIGR04362		157	TIGR04362, choice_anch_C, choice-of-anchor C domai	3e-11
pfam04862		323	pfam04862, DUF642, Protein of unknown function, DU	1e-06
TIGR04362		157	TIGR04362, choice_anch_C, choice-of-anchor C domai	1e-06

>gnl\|CDD\|215569 PLN03089, PLN03089, hypothetical protein; Provisional	Back alignment and domain information

 Score =  619 bits (1598), Expect = 0.0
 Identities = 201/363 (55%), Positives = 260/363 (71%)

Query: 17  LFMFVVAHLASSILAEDGLVANGDFETSPSHGFPSESIADGPTEIPSWKLNGTVELVSSG 76
           L + + A  AS+    DGL+ NGDFET P     + ++  G   IP W+++G VE +SSG
Sbjct: 11  LLLLLCAAAASAAPVTDGLLPNGDFETPPKKSQMNGTVVIGKNAIPGWEISGFVEYISSG 70

Query: 77  QKQGGMILIVPQGSHAVRLGNDAEISQEVKVEKGSTYSVTFSAARTCAQLESLNVSVPPA 136
           QKQGGM+L+VP+G+HAVRLGN+A ISQ + V KGS YS+TFSAARTCAQ ESLNVSVPP 
Sbjct: 71  QKQGGMLLVVPEGAHAVRLGNEASISQTLTVTKGSYYSLTFSAARTCAQDESLNVSVPPE 130

Query: 137 SQTIDLQTLYNVQGWDPYAWAFEAEDDNVKLLFKNPGMEDDPTCGPIIDDIAIKKLFAPD 196
           S  + LQTLY+  GWD YAWAF+AE D V L+F NPG+E+DP CGP+ID +AIK LF P 
Sbjct: 131 SGVLPLQTLYSSSGWDSYAWAFKAESDVVNLVFHNPGVEEDPACGPLIDAVAIKTLFPPR 190

Query: 197 KPKDNAVDNGDFEEGPWMFRNVSLGVLLPTNLDEETSSLPGWIVESNRAVRYIDSYHYSV 256
             KDN + NG FEEGP++F N S GVLLP N++++TS LPGW++ES +AV+YIDS H+SV
Sbjct: 191 PTKDNLLKNGGFEEGPYVFPNSSWGVLLPPNIEDDTSPLPGWMIESLKAVKYIDSAHFSV 250

Query: 257 PQGKRAIELLSGKEGIISQMVETMANKDYSLTFSLGHAGDKCKQPLAVMAFAGDQAQIVH 316
           P+GKRA+EL+SGKE  I+Q+V T+  K Y+L+F++G A + C   + V AFAG   Q V 
Sbjct: 251 PEGKRAVELVSGKESAIAQVVRTVPGKSYNLSFTVGDANNGCHGSMMVEAFAGKDTQKVP 310

Query: 317 YTEDANSTFHDANVNFTAKADRTRIAFYSVYYNTRTDDMSSLCGPVVDDVRVWFSGSSRI 376
           Y       F  A++ F A ++RTRI FYS +Y+T++DD  SLCGPVVDDVRV    + R 
Sbjct: 311 YESQGKGGFKRASLRFKAVSNRTRITFYSSFYHTKSDDFGSLCGPVVDDVRVVPVRAPRA 370

Query: 377 VFG 379
              
Sbjct: 371 GKP 373

Length = 373

>gnl\|CDD\|191115 pfam04862, DUF642, Protein of unknown function, DUF642	Back alignment and domain information

>gnl\|CDD\|234562 TIGR04362, choice_anch_C, choice-of-anchor C domain	Back alignment and domain information

>gnl\|CDD\|191115 pfam04862, DUF642, Protein of unknown function, DUF642	Back alignment and domain information

>gnl\|CDD\|234562 TIGR04362, choice_anch_C, choice-of-anchor C domain	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		397
PLN03089		373	hypothetical protein; Provisional	100.0
PF04862		159	DUF642: Protein of unknown function (DUF642); Inte	100.0
PLN03089		373	hypothetical protein; Provisional	100.0
PF04862		159	DUF642: Protein of unknown function (DUF642); Inte	100.0
PF02018		131	CBM_4_9: Carbohydrate binding domain; InterPro: IP	98.74
PF02018		131	CBM_4_9: Carbohydrate binding domain; InterPro: IP	98.59
cd06263		157	MAM Meprin, A5 protein, and protein tyrosine phosp	92.02
PF15425		212	DUF4627: Domain of unknown function (DUF4627); PDB	91.14
smart00137		161	MAM Domain in meprin, A5, receptor protein tyrosin	84.03
PF00629		160	MAM: MAM domain; InterPro: IPR000998 MAM is an acr	83.02
cd06263		157	MAM Meprin, A5 protein, and protein tyrosine phosp	82.44

>PLN03089 hypothetical protein; Provisional	Back alignment and domain information

Probab=100.00  E-value=3.5e-112  Score=850.00  Aligned_cols=363  Identities=55%  Similarity=0.962  Sum_probs=346.4

Q ss_pred             chhHHHHHHHHHhh--cccccccCCccCCCCCCCCCCCCCCcceecCCCCCCCcEEeeeEEEEeCCcccCceeEecCCCC
Q 015986           13 RWVSLFMFVVAHLA--SSILAEDGLVANGDFETSPSHGFPSESIADGPTEIPSWKLNGTVELVSSGQKQGGMILIVPQGS   90 (397)
Q Consensus        13 ~~~~~~~~~~~~~~--~~~~~~~nLl~NG~FE~gp~~~~~n~t~~~~~s~ipGW~i~g~Veyi~sg~~~~~~~~~vp~G~   90 (397)
                      +.++|+|+|+++++  ++++.++|||+|||||++|.+.++|+++.++.++||||+++|.||||+++||||||+|+||+|+
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~nLL~NG~FE~gP~~~~~n~t~~~g~s~LPgW~i~g~VeyI~s~~~~~~m~~~vP~G~   84 (373)
T PLN03089          5 HSLLLLLLLLLCAAAASAAPVTDGLLPNGDFETPPKKSQMNGTVVIGKNAIPGWEISGFVEYISSGQKQGGMLLVVPEGA   84 (373)
T ss_pred             hhHHHHHHHHHHhcccccccccCCeecCCCccCCCCcCCCCcccccCCCCCCCCEecCcEEEEeCCCccCceeEECCCCc
Confidence            33444444455555  4455889999999999999877789999999999999999999999999999999999999999


Q ss_pred             eEEEcCCCceeeEEEEccCCCeEEEEEEeccCcCCCcceEEEEcCCcceEEEEeeeeccCeeeEEEEEEEecceEEEEEE
Q 015986           91 HAVRLGNDAEISQEVKVEKGSTYSVTFSAARTCAQLESLNVSVPPASQTIDLQTLYNVQGWDPYAWAFEAEDDNVKLLFK  170 (397)
Q Consensus        91 ~aVeLG~~~~I~Q~~~t~~G~~Y~LTFsAa~~ca~~~~l~Vsv~~~~~~~~~~t~y~s~GW~~~s~~F~A~~~~t~l~F~  170 (397)
                      ||||||+|++|+|+|+|++|++|+|||+++|+|+|.|.|+|+++++++++++++.|+++||++|+|+|+|++++++|+||
T Consensus        85 ~Av~LG~e~sI~Q~i~t~~G~~Y~LTFs~ar~c~~~~~v~vsv~~~~~~~~~qt~~~~~gw~~~s~~F~A~s~~t~l~F~  164 (373)
T PLN03089         85 HAVRLGNEASISQTLTVTKGSYYSLTFSAARTCAQDESLNVSVPPESGVLPLQTLYSSSGWDSYAWAFKAESDVVNLVFH  164 (373)
T ss_pred             hhhhcCCCceEEEEEEccCCCEEEEEEEecCCCCCCceEEEEecCCCcEEeeEEeccCCCcEEEEEEEEEecccEEEEEE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCcCcceeeEEEEeecCCCCCccccccCCCcccCCcccccCCceeeecccccCCCCCCCCcEEeecceEEEEc
Q 015986          171 NPGMEDDPTCGPIIDDIAIKKLFAPDKPKDNAVDNGDFEEGPWMFRNVSLGVLLPTNLDEETSSLPGWIVESNRAVRYID  250 (397)
Q Consensus       171 s~g~~~~~~cGPvIDdV~V~~l~~p~~~~~NLl~NGsFE~gP~~~p~~~~g~~~~~~~~~~~s~IpGWtv~s~~~V~yI~  250 (397)
                      +++.++|++|||+||||+|+++.+|.++++|||+||+||+||+++|+++||++|||++++++++||||||+++|+|||||
T Consensus       165 ~~~~~~D~~CGPviD~VaIk~l~~P~p~~~Nll~NG~FE~Gp~~~~n~~~gvllp~~~~~~~s~LpgW~i~s~~~V~yid  244 (373)
T PLN03089        165 NPGVEEDPACGPLIDAVAIKTLFPPRPTKDNLLKNGGFEEGPYVFPNSSWGVLLPPNIEDDTSPLPGWMIESLKAVKYID  244 (373)
T ss_pred             CcccCCCCcccceeeeEEEeeccCCCccccceeecCCcccCCcccCCCCceEEeCCccccCCCCCCCcEEecCccEEEEe
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999889999999


Q ss_pred             CCCccCCCCCeEEEecCCCcceeEEEEEcccCCeEEEEEEeccCCCCCCCCeeEEEEecCcceEEEEEecCCCCeEEEEE
Q 015986          251 SYHYSVPQGKRAIELLSGKEGIISQMVETMANKDYSLTFSLGHAGDKCKQPLAVMAFAGDQAQIVHYTEDANSTFHDANV  330 (397)
Q Consensus       251 s~~~~vp~G~~aVeL~~g~~~~I~Q~~~T~~G~~Y~LtF~lg~A~n~c~g~~~v~~~~g~~~~~~~~~s~g~~gw~~~s~  330 (397)
                      ++||+||+|+|||||++|+|++|+|+++|++|+.|+|+|+||+|+|.|+++|.|++++|+.+++++|+++|+++|+++++
T Consensus       245 s~h~~vp~G~~aveL~~g~e~aI~Q~v~T~~G~~Y~LsFs~g~a~~~c~gs~~V~a~ag~~~~~v~~~s~g~gg~~~~s~  324 (373)
T PLN03089        245 SAHFSVPEGKRAVELVSGKESAIAQVVRTVPGKSYNLSFTVGDANNGCHGSMMVEAFAGKDTQKVPYESQGKGGFKRASL  324 (373)
T ss_pred             cCcccCCCCceEEEeccCCcceEEEEEEccCCCEEEEEEEEccCCCCCCCcEEEEEEeecccceEEEecCCCcceEEEEE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEccceeEEEEEEcccccccCCCCCcCcceeeeEEEE-ecCCCc
Q 015986          331 NFTAKADRTRIAFYSVYYNTRTDDMSSLCGPVVDDVRVW-FSGSSR  375 (397)
Q Consensus       331 ~F~A~s~~T~L~F~S~~~~~~~d~~~~~cGpvIDdVsV~-v~~p~~  375 (397)
                      .|+|++++|||+|+|.+||++.|+.+++|||+||||+|+ ++.|++
T Consensus       325 ~F~A~s~~Trl~F~s~~y~~~~d~~~~~cGPvlDdV~v~~~~~~~~  370 (373)
T PLN03089        325 RFKAVSNRTRITFYSSFYHTKSDDFGSLCGPVVDDVRVVPVRAPRA  370 (373)
T ss_pred             EEEeccCCEEEEEEEeecccccCcCCCcccceeeeEEEEEccCCcc
Confidence            999999999999999999999998899999999999999 988765

>PF04862 DUF642: Protein of unknown function (DUF642); InterPro: IPR006946 This family contains a conserved region found in a number of uncharacterised plant proteins	Back alignment and domain information

>PLN03089 hypothetical protein; Provisional	Back alignment and domain information

>PF04862 DUF642: Protein of unknown function (DUF642); InterPro: IPR006946 This family contains a conserved region found in a number of uncharacterised plant proteins	Back alignment and domain information

>PF02018 CBM_4_9: Carbohydrate binding domain; InterPro: IPR003305 The 1,4-beta-glucanase CenC from Cellulomonas fimi contains two cellulose-binding domains, CBD(N1) and CBD(N2), arranged in tandem at its N terminus	Back alignment and domain information

>PF02018 CBM_4_9: Carbohydrate binding domain; InterPro: IPR003305 The 1,4-beta-glucanase CenC from Cellulomonas fimi contains two cellulose-binding domains, CBD(N1) and CBD(N2), arranged in tandem at its N terminus	Back alignment and domain information

>cd06263 MAM Meprin, A5 protein, and protein tyrosine phosphatase Mu (MAM) domain	Back alignment and domain information

>PF15425 DUF4627: Domain of unknown function (DUF4627); PDB: 3SEE_A	Back alignment and domain information

>smart00137 MAM Domain in meprin, A5, receptor protein tyrosine phosphatase mu (and others)	Back alignment and domain information

>PF00629 MAM: MAM domain; InterPro: IPR000998 MAM is an acronym derived from meprin, A-5 protein, and receptor protein-tyrosine phosphatase mu	Back alignment and domain information

>cd06263 MAM Meprin, A5 protein, and protein tyrosine phosphatase Mu (MAM) domain	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		397
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-06
1gui_A		155	Laminarinase 16A; carbohydrate binding module, CBM	3e-05
2zex_A		147	S-layer associated multidomain endoglucanase; fami	7e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

 Score = 47.2 bits (111), Expect = 8e-06
 Identities = 38/207 (18%), Positives = 71/207 (34%), Gaps = 49/207 (23%)

Query: 207 DFEEGP--WMFRNVSLGVLLPT---NLD-EETSSLPGWIVESNRAVRYIDSYHYSVPQGK 260
           DFE G   + ++++ L V       N D ++   +P  I+ S   + +I     +V    
Sbjct: 8   DFETGEHQYQYKDI-LSVFEDAFVDNFDCKDVQDMPKSIL-SKEEIDHIIMSKDAVSGTL 65

Query: 261 RAIELLSGK-EGIISQMVETMANKDYSLTFSLGHAGDKCKQPLAVMAFAGDQAQIVHYTE 319
           R    L  K E ++ + VE +   +Y   F +     + +QP  +            Y E
Sbjct: 66  RLFWTLLSKQEEMVQKFVEEVLRINYK--FLMSPIKTEQRQPSMMT---------RMYIE 114

Query: 320 DANSTFHDANVNFTAKADRTRIAFY----SVYYNTRTDD------M-----SSLCGPVVD 364
             +  ++D N  F  K + +R+  Y          R         +     + +   V  
Sbjct: 115 QRDRLYND-NQVFA-KYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCL 172

Query: 365 DVRVWFSGSSRIVFGQLGLGLGVGFWL 391
             +V           Q  +   + FWL
Sbjct: 173 SYKV-----------QCKMDFKI-FWL 187

PyMOL of 1vt4

>1gui_A Laminarinase 16A; carbohydrate binding module, CBM, glucan, cellulose; HET: BGC; 1.9A {Thermotoga maritima} SCOP: b.18.1.14 Length = 155	Back alignment and structure

>2zex_A S-layer associated multidomain endoglucanase; family 16 CBM-1 cellopentaose complex, glycosidase, hydrolase; HET: BGC; 1.20A {Thermoanaerobacteriumpolysaccharolyticum} PDB: 2zew_A 2zey_A* 3oea_A* 3oeb_A* Length = 147	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		397
2zex_A		147	S-layer associated multidomain endoglucanase; fami	99.3
2zex_A		147	S-layer associated multidomain endoglucanase; fami	99.23
2zez_A		144	Family 16 CBM-2, S-layer associated multidomain en	98.99
2zez_A		144	Family 16 CBM-2, S-layer associated multidomain en	98.94
2xom_A		152	Arabinogalactan endo-1,4-beta-galactosidase; hydro	98.93
1gu3_A		149	Endoglucanase C; carbohydrate-binding module, carb	98.92
1gui_A		155	Laminarinase 16A; carbohydrate binding module, CBM	98.82
2xom_A		152	Arabinogalactan endo-1,4-beta-galactosidase; hydro	98.77
1gui_A		155	Laminarinase 16A; carbohydrate binding module, CBM	98.7
1gu3_A		149	Endoglucanase C; carbohydrate-binding module, carb	98.68
1cx1_A		153	Endoglucanase C; cellulose-binding domain, cellool	98.66
1cx1_A		153	Endoglucanase C; cellulose-binding domain, cellool	98.58
3k4z_A		289	Glycoside hydrolase family 9; cellulase, CBHA, CBM	98.51
3p6b_A		205	Cellulose 1,4-beta-cellobiosidase; beta-sandwich,	98.47
1dyo_A		160	Endo-1,4-beta-xylanase Y; carbohydrate-binding mod	98.42
3p6b_A		205	Cellulose 1,4-beta-cellobiosidase; beta-sandwich,	98.41
3ecq_A		1531	Protein SPR0328, endo-alpha-N-acetylgalactosaminid	98.4
3k4z_A		289	Glycoside hydrolase family 9; cellulase, CBHA, CBM	98.38
2zxq_A		1376	Endo-alpha-N-acetylgalactosaminidase; broken TIM b	98.33
1dyo_A		160	Endo-1,4-beta-xylanase Y; carbohydrate-binding mod	98.17
2w5f_A		540	Endo-1,4-beta-xylanase Y; cellulosome, glycosidase	97.41
2w5f_A		540	Endo-1,4-beta-xylanase Y; cellulosome, glycosidase	97.26
2y6h_A		167	Xylanase, CBM4-2; hydrolase; 1.08A {Rhodothermus m	96.6
2y6h_A		167	Xylanase, CBM4-2; hydrolase; 1.08A {Rhodothermus m	96.58
2w47_A		144	Lipolytic enzyme, G-D-S-L; hydrolase; HET: UNF; 1.	94.06
2w3j_A		145	Carbohydrate binding module; sugar-binding protein	93.37
2zxq_A		1376	Endo-alpha-N-acetylgalactosaminidase; broken TIM b	93.22
3ecq_A		1531	Protein SPR0328, endo-alpha-N-acetylgalactosaminid	93.16
2wz8_A		156	Cellulosome protein dockerin type I; sugar binding	92.33
2w47_A		144	Lipolytic enzyme, G-D-S-L; hydrolase; HET: UNF; 1.	91.42
2w3j_A		145	Carbohydrate binding module; sugar-binding protein	91.12
2w87_A		139	Esterase D, XYL-CBM35; plant cell WALL degradation	90.96
2w87_A		139	Esterase D, XYL-CBM35; plant cell WALL degradation	90.11
2wz8_A		156	Cellulosome protein dockerin type I; sugar binding	89.55
2vzp_A		127	Aocbm35, EXO-beta-D-glucosaminidase; family 35, CS	89.01
2vzp_A		127	Aocbm35, EXO-beta-D-glucosaminidase; family 35, CS	82.44

>2zex_A S-layer associated multidomain endoglucanase; family 16 CBM-1 cellopentaose complex, glycosidase, hydrolase; HET: BGC; 1.20A {Thermoanaerobacteriumpolysaccharolyticum} PDB: 2zew_A 2zey_A* 3oea_A* 3oeb_A*	Back alignment and structure

Probab=99.30  E-value=1.5e-11  Score=107.38  Aligned_cols=133  Identities=20%  Similarity=0.237  Sum_probs=82.2

Q ss_pred             ccccCCccCCCCCCCCCCCCCCcceecCCCCCCCcEEeee--EEEEeCCcccCceeEecCCCCeEEEc-C-CCceeeEEE
Q 015986           30 LAEDGLVANGDFETSPSHGFPSESIADGPTEIPSWKLNGT--VELVSSGQKQGGMILIVPQGSHAVRL-G-NDAEISQEV  105 (397)
Q Consensus        30 ~~~~nLl~NG~FE~gp~~~~~n~t~~~~~s~ipGW~i~g~--Veyi~sg~~~~~~~~~vp~G~~aVeL-G-~~~~I~Q~~  105 (397)
                      |+..|||+||+||++                +.||+..|.  .. +..         .+-.|.+++++ + ..+.+.|.|
T Consensus         2 a~~~Nli~N~~FE~g----------------~~~W~~~~~~~~~-~~~---------~~~~G~~~l~~~~~~~~~~~Q~v   55 (147)
T 2zex_A            2 AHMVNMVSNPGFEDG----------------LDSWQDWQQDMSA-VPE---------AAHNGALGLKIGGGKAAGGGQDI   55 (147)
T ss_dssp             CCCEECCSSTTSTTT----------------TTTCEETTSCEEE-EGG---------GCSSSSCEEEECSSSCEEEEEEC
T ss_pred             ccccceecCCCcccC----------------ccCCcCcCCceeE-Eec---------cccCCceEEEEcCCCCccEeEEE
Confidence            346899999999985                237887553  22 221         12378999998 5 347999999


Q ss_pred             EccCCCeEEEEEEecc--CcCCCcceEEEEc--CCcceEEEEe-eeeccCeeeEEEEEEEecceEE----EEEECCCCCC
Q 015986          106 KVEKGSTYSVTFSAAR--TCAQLESLNVSVP--PASQTIDLQT-LYNVQGWDPYAWAFEAEDDNVK----LLFKNPGMED  176 (397)
Q Consensus       106 ~t~~G~~Y~LTFsAa~--~ca~~~~l~Vsv~--~~~~~~~~~t-~y~s~GW~~~s~~F~A~~~~t~----l~F~s~g~~~  176 (397)
                      .+.||++|+|+|++.-  ...+.-.+.|.+.  .........+ ...+.+|+..+++|++.+..+.    +.|....   
T Consensus        56 ~v~~~~~Y~ls~wvk~~~~g~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~W~~~s~~ftt~~~~~~~~~~~~~~~~~---  132 (147)
T 2zex_A           56 PLKPNTTYILGAWAKFDSKPAGTFDVVVQYHLKDANNTYVQHILNFNETDWTYKQLLFTTPDVFGSTPQLALWKGDT---  132 (147)
T ss_dssp             CCCTTCEEEEEEEEEESSCCSSCEEEEEEEEBSSTTCCEEEEEEEECCSSCEEEEEEEECCSSBSSCCEEEEEECCC---
T ss_pred             EECCCCEEEEEEEEEeccCCCceEEEEEEEeeCCCCCcEEEeEeeeCCCCcEEEEEEEEcCCCCceEEEEEEEecCC---
Confidence            9999999999999422  2221112444432  1122222222 2356789999999997765432    2233321   


Q ss_pred             CCCcCcceeeEEEEee
Q 015986          177 DPTCGPIIDDIAIKKL  192 (397)
Q Consensus       177 ~~~cGPvIDdV~V~~l  192 (397)
                       ...--.||||+|+.+
T Consensus       133 -~~~~~~iDDv~l~~v  147 (147)
T 2zex_A          133 -SKANLYVDDVYLVEV  147 (147)
T ss_dssp             -SSCCEEEEEEEEEEC
T ss_pred             -CcceEEEEeEEEEEC
Confidence             122235999999864

PyMOL of 2zex

>2zex_A S-layer associated multidomain endoglucanase; family 16 CBM-1 cellopentaose complex, glycosidase, hydrolase; HET: BGC; 1.20A {Thermoanaerobacteriumpolysaccharolyticum} PDB: 2zew_A 2zey_A* 3oea_A* 3oeb_A*	Back alignment and structure

>2zez_A Family 16 CBM-2, S-layer associated multidomain endoglucanase; family 16 carbohydrate binding module-2; 1.90A {Thermoanaerobacterium polysaccharolytiorganism_taxid}	Back alignment and structure

>2zez_A Family 16 CBM-2, S-layer associated multidomain endoglucanase; family 16 carbohydrate binding module-2; 1.90A {Thermoanaerobacterium polysaccharolytiorganism_taxid}	Back alignment and structure

>2xom_A Arabinogalactan endo-1,4-beta-galactosidase; hydrolase, carbohydrate-binding module, glycoside hydrolase, beta-sandwich.; HET: GAL; 0.95A {Thermotoga maritima} PDB: 2xon_A*	Back alignment and structure

>1gu3_A Endoglucanase C; carbohydrate-binding module, carbohydrate binding module, CBM, cellulose; HET: BGC; 2.3A {Cellulomonas fimi} SCOP: b.18.1.14 PDB: 1ulo_A 1ulp_A	Back alignment and structure

>1gui_A Laminarinase 16A; carbohydrate binding module, CBM, glucan, cellulose; HET: BGC; 1.9A {Thermotoga maritima} SCOP: b.18.1.14	Back alignment and structure

>2xom_A Arabinogalactan endo-1,4-beta-galactosidase; hydrolase, carbohydrate-binding module, glycoside hydrolase, beta-sandwich.; HET: GAL; 0.95A {Thermotoga maritima} PDB: 2xon_A*	Back alignment and structure

>1gui_A Laminarinase 16A; carbohydrate binding module, CBM, glucan, cellulose; HET: BGC; 1.9A {Thermotoga maritima} SCOP: b.18.1.14	Back alignment and structure

>1gu3_A Endoglucanase C; carbohydrate-binding module, carbohydrate binding module, CBM, cellulose; HET: BGC; 2.3A {Cellulomonas fimi} SCOP: b.18.1.14 PDB: 1ulo_A 1ulp_A	Back alignment and structure

>1cx1_A Endoglucanase C; cellulose-binding domain, cellooligosacharides, cellulase, protein- carbohydrate interaction, hydrolase; NMR {Cellulomonas fimi} SCOP: b.18.1.14	Back alignment and structure

>1cx1_A Endoglucanase C; cellulose-binding domain, cellooligosacharides, cellulase, protein- carbohydrate interaction, hydrolase; NMR {Cellulomonas fimi} SCOP: b.18.1.14	Back alignment and structure

>3k4z_A Glycoside hydrolase family 9; cellulase, CBHA, CBM4, IG-like, cellulosome, CBM, sugar binding protein; HET: CBI XGP; 2.11A {Clostridium thermocellum dsm 4150}	Back alignment and structure

>3p6b_A Cellulose 1,4-beta-cellobiosidase; beta-sandwich, carbohydrate binding, sugar binding protein; 2.00A {Clostridium thermocellum}	Back alignment and structure

>1dyo_A Endo-1,4-beta-xylanase Y; carbohydrate-binding module, xylan-binding; 2.1A {Clostridium thermocellum} SCOP: b.18.1.7 PDB: 1h6y_A 1h6x_A	Back alignment and structure

>3p6b_A Cellulose 1,4-beta-cellobiosidase; beta-sandwich, carbohydrate binding, sugar binding protein; 2.00A {Clostridium thermocellum}	Back alignment and structure

>3ecq_A Protein SPR0328, endo-alpha-N-acetylgalactosaminidase; distorted (beta/alpha)8 (TIM) barrel glycoside hydrolase DOM WALL; 2.90A {Streptococcus pneumoniae}	Back alignment and structure

>3k4z_A Glycoside hydrolase family 9; cellulase, CBHA, CBM4, IG-like, cellulosome, CBM, sugar binding protein; HET: CBI XGP; 2.11A {Clostridium thermocellum dsm 4150}	Back alignment and structure

>2zxq_A Endo-alpha-N-acetylgalactosaminidase; broken TIM barrel, glycosidase, hydrolase; 2.00A {Bifidobacterium longum}	Back alignment and structure

>1dyo_A Endo-1,4-beta-xylanase Y; carbohydrate-binding module, xylan-binding; 2.1A {Clostridium thermocellum} SCOP: b.18.1.7 PDB: 1h6y_A 1h6x_A	Back alignment and structure

>2w5f_A Endo-1,4-beta-xylanase Y; cellulosome, glycosidase, xylan degradation, hydrolase; HET: XYP; 1.90A {Clostridium thermocellum} PDB: 2wze_A* 2wys_A*	Back alignment and structure

>2w5f_A Endo-1,4-beta-xylanase Y; cellulosome, glycosidase, xylan degradation, hydrolase; HET: XYP; 1.90A {Clostridium thermocellum} PDB: 2wze_A* 2wys_A*	Back alignment and structure

>2y6h_A Xylanase, CBM4-2; hydrolase; 1.08A {Rhodothermus marinus} PDB: 2y64_A* 2y6g_A 2y6l_A* 2y6j_A* 2y6k_A* 3jxs_A 1k42_A 1k45_A	Back alignment and structure

>2y6h_A Xylanase, CBM4-2; hydrolase; 1.08A {Rhodothermus marinus} PDB: 2y64_A* 2y6g_A 2y6l_A* 2y6j_A* 2y6k_A* 3jxs_A 1k42_A 1k45_A	Back alignment and structure

>2w47_A Lipolytic enzyme, G-D-S-L; hydrolase; HET: UNF; 1.40A {Clostridium thermocellum} PDB: 2w1w_A	Back alignment and structure

>2w3j_A Carbohydrate binding module; sugar-binding protein, family 35, uronic acid sugars; 1.70A {Uncultured bacterium}	Back alignment and structure

>2zxq_A Endo-alpha-N-acetylgalactosaminidase; broken TIM barrel, glycosidase, hydrolase; 2.00A {Bifidobacterium longum}	Back alignment and structure

>3ecq_A Protein SPR0328, endo-alpha-N-acetylgalactosaminidase; distorted (beta/alpha)8 (TIM) barrel glycoside hydrolase DOM WALL; 2.90A {Streptococcus pneumoniae}	Back alignment and structure

>2wz8_A Cellulosome protein dockerin type I; sugar binding protein; 1.50A {Clostridium thermocellum}	Back alignment and structure

>2w47_A Lipolytic enzyme, G-D-S-L; hydrolase; HET: UNF; 1.40A {Clostridium thermocellum} PDB: 2w1w_A	Back alignment and structure

>2w3j_A Carbohydrate binding module; sugar-binding protein, family 35, uronic acid sugars; 1.70A {Uncultured bacterium}	Back alignment and structure

>2w87_A Esterase D, XYL-CBM35; plant cell WALL degradation, carbohydrate protein binding, xylan, CMB35, glucuronic acid, hydrolase; HET: GCU; 1.60A {Cellvibrio japonicus} PDB: 2w46_A	Back alignment and structure

>2w87_A Esterase D, XYL-CBM35; plant cell WALL degradation, carbohydrate protein binding, xylan, CMB35, glucuronic acid, hydrolase; HET: GCU; 1.60A {Cellvibrio japonicus} PDB: 2w46_A	Back alignment and structure

>2wz8_A Cellulosome protein dockerin type I; sugar binding protein; 1.50A {Clostridium thermocellum}	Back alignment and structure

>2vzp_A Aocbm35, EXO-beta-D-glucosaminidase; family 35, CSXA, glucuronic acid, hydrolase; 1.05A {Amycolatopsis orientalis} PDB: 2vzq_A* 2vzr_A*	Back alignment and structure

>2vzp_A Aocbm35, EXO-beta-D-glucosaminidase; family 35, CSXA, glucuronic acid, hydrolase; 1.05A {Amycolatopsis orientalis} PDB: 2vzq_A* 2vzr_A*	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		397
d1guia_		155	b.18.1.14 (A:) Carbohydrate binding module from la	5e-04
d1cx1a_		153	b.18.1.14 (A:) Cellulose-binding domain of cellula	0.002

>d1guia_ b.18.1.14 (A:) Carbohydrate binding module from laminarinase 16A {Thermotoga maritima [TaxId: 2336]} Length = 155	Back information, alignment and structure


class: All beta proteins
fold: Galactose-binding domain-like
superfamily: Galactose-binding domain-like
family: CBM4/9
domain: Carbohydrate binding module from laminarinase 16A
species: Thermotoga maritima [TaxId: 2336]

 Score = 38.3 bits (88), Expect = 5e-04
 Identities = 25/164 (15%), Positives = 54/164 (32%), Gaps = 23/164 (14%)

Query: 36  VANGDFETSPSHGFPSESIADGPTEIPSWKLNGTVELVSSGQKQGGMILIVPQGSHAVRL 95
           + NG F+             D       W +    +   SG +       V  G   + +
Sbjct: 2   INNGTFDEPIV--------NDQANNPDEWFIWQAGDYGISGARVSDYG--VRDGYAYITI 51

Query: 96  GN------DAEISQEVKVEKGSTYSVTFSA-ARTCAQLESLNVSVPPASQTIDLQTLYNV 148
            +        + +Q + + +G TY+++F A A T   +    +           QT+   
Sbjct: 52  ADPGTDTWHIQFNQWIGLYRGKTYTISFKAKADTPRPINVKILQNHDPWTNYFAQTVNLT 111

Query: 149 QGWDPYAWAFEAE---DDNVKLLFKNPGMEDDPTCGPIIDDIAI 189
             W  + + +      D+ V++ F    + +        DD+ +
Sbjct: 112 ADWQTFTFTYTHPDDADEVVQISF---ELGEGTATTIYFDDVTV 152

PyMOL of d1guia_

>d1cx1a_ b.18.1.14 (A:) Cellulose-binding domain of cellulase C {Cellulomonas fimi [TaxId: 1708]} Length = 153	Back information, alignment and structure

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		397
d1guia_		155	Carbohydrate binding module from laminarinase 16A	99.13
d1guia_		155	Carbohydrate binding module from laminarinase 16A	99.07
d1cx1a_		153	Cellulose-binding domain of cellulase C {Cellulomo	99.06
d1cx1a_		153	Cellulose-binding domain of cellulase C {Cellulomo	99.03
d1h6ya_		157	Xylan-binding domain {Clostridium thermocellum [Ta	98.75
d1h6ya_		157	Xylan-binding domain {Clostridium thermocellum [Ta	98.6
d1gu3a_		142	Cellulose-binding domain of cellulase C {Cellulomo	98.44
d1gu3a_		142	Cellulose-binding domain of cellulase C {Cellulomo	98.23
d1k42a_		168	Carbohydrate binding module from a thermostable xy	96.42
d1k42a_		168	Carbohydrate binding module from a thermostable xy	95.72

>d1guia_ b.18.1.14 (A:) Carbohydrate binding module from laminarinase 16A {Thermotoga maritima [TaxId: 2336]}	Back information, alignment and structure

class: All beta proteins
fold: Galactose-binding domain-like
superfamily: Galactose-binding domain-like
family: CBM4/9
domain: Carbohydrate binding module from laminarinase 16A
species: Thermotoga maritima [TaxId: 2336]

Probab=99.13  E-value=5.9e-10  Score=94.24  Aligned_cols=101  Identities=16%  Similarity=0.196  Sum_probs=64.5

Q ss_pred             CCCeEEEecCCCc----ceeEEEEEcccCCeEEEEEEeccCCCCCCCCeeEEEEecCcceEE--EEEecCCCCeEEEEEE
Q 015986          258 QGKRAIELLSGKE----GIISQMVETMANKDYSLTFSLGHAGDKCKQPLAVMAFAGDQAQIV--HYTEDANSTFHDANVN  331 (397)
Q Consensus       258 ~G~~aVeL~~g~~----~~I~Q~~~T~~G~~Y~LtF~lg~A~n~c~g~~~v~~~~g~~~~~~--~~~s~g~~gw~~~s~~  331 (397)
                      .|..++++.+...    ..+.|.+++.+|++|+|+|.+-.. .  .+.+.+.+.........  .-....+..|++++++
T Consensus        44 ~g~~~~~i~~~g~~~~~~~~~q~v~l~~g~~Y~lSf~~k~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~t~~W~~~s~~  120 (155)
T d1guia_          44 DGYAYITIADPGTDTWHIQFNQWIGLYRGKTYTISFKAKAD-T--PRPINVKILQNHDPWTNYFAQTVNLTADWQTFTFT  120 (155)
T ss_dssp             TTEEEEEEEECCSSGGGEEEEEEEECCTTCEEEEEEEEEES-S--CEEEEEEEECSSTTCCEEEEEEEEECSSCEEEEEE
T ss_pred             CCeEEEEEecCCCCccceEEEEeeEecCCCEEEEEEEEEeC-C--CCcEEEEEEEcCCCCeEEeeeEEeeccccEEEEEE
Confidence            5888999965322    248999999999999999997421 1  23344443322211111  1111224579999999


Q ss_pred             EEEcc---ceeEEEEEEcccccccCCCCCcCcceeeeEEEE
Q 015986          332 FTAKA---DRTRIAFYSVYYNTRTDDMSSLCGPVVDDVRVW  369 (397)
Q Consensus       332 F~A~s---~~T~L~F~S~~~~~~~d~~~~~cGpvIDdVsV~  369 (397)
                      |++.+   ...+|.|...     .+   ..+.-.||||+|+
T Consensus       121 f~~~~~~~~~~~l~~~~~-----~~---~~~~~~iDnV~l~  153 (155)
T d1guia_         121 YTHPDDADEVVQISFELG-----EG---TATTIYFDDVTVS  153 (155)
T ss_dssp             EECCTTSCSEEEEEEECC-----SS---CCCEEEEEEEEEE
T ss_pred             EEecCCCCccEEEEEEEC-----CC---CCcEEEEEEEEEE
Confidence            99986   4568888641     12   2356899999997

PyMOL of d1guia_

>d1guia_ b.18.1.14 (A:) Carbohydrate binding module from laminarinase 16A {Thermotoga maritima [TaxId: 2336]}	Back information, alignment and structure

>d1cx1a_ b.18.1.14 (A:) Cellulose-binding domain of cellulase C {Cellulomonas fimi [TaxId: 1708]}	Back information, alignment and structure

>d1cx1a_ b.18.1.14 (A:) Cellulose-binding domain of cellulase C {Cellulomonas fimi [TaxId: 1708]}	Back information, alignment and structure

>d1h6ya_ b.18.1.7 (A:) Xylan-binding domain {Clostridium thermocellum [TaxId: 1515]}	Back information, alignment and structure

>d1h6ya_ b.18.1.7 (A:) Xylan-binding domain {Clostridium thermocellum [TaxId: 1515]}	Back information, alignment and structure

>d1gu3a_ b.18.1.14 (A:) Cellulose-binding domain of cellulase C {Cellulomonas fimi [TaxId: 1708]}	Back information, alignment and structure

>d1gu3a_ b.18.1.14 (A:) Cellulose-binding domain of cellulase C {Cellulomonas fimi [TaxId: 1708]}	Back information, alignment and structure

>d1k42a_ b.18.1.14 (A:) Carbohydrate binding module from a thermostable xylanase {Rhodothermus marinus [TaxId: 29549]}	Back information, alignment and structure

>d1k42a_ b.18.1.14 (A:) Carbohydrate binding module from a thermostable xylanase {Rhodothermus marinus [TaxId: 29549]}	Back information, alignment and structure