Citrus Sinensis ID: 016003
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 397 | 2.2.26 [Sep-21-2011] | |||||||
| Q84WQ5 | 391 | CBS domain-containing pro | no | no | 0.954 | 0.969 | 0.553 | 1e-104 | |
| Q8GZA4 | 425 | CBS domain-containing pro | no | no | 0.889 | 0.830 | 0.281 | 2e-24 | |
| Q8GXI9 | 357 | SNF1-related protein kina | no | no | 0.833 | 0.927 | 0.209 | 4e-07 |
| >sp|Q84WQ5|CBSX5_ARATH CBS domain-containing protein CBSX5 OS=Arabidopsis thaliana GN=CBSX5 PE=2 SV=2 | Back alignment and function desciption |
|---|
Score = 379 bits (972), Expect = e-104, Method: Compositional matrix adjust.
Identities = 224/405 (55%), Positives = 289/405 (71%), Gaps = 26/405 (6%)
Query: 1 MAVSLLADEVSDLCLGKPALRALSISAAIA-DALSALKNSDESFISVWDCNCCSNHRKLG 59
MA+SLL+ VSDLCLGKP LR LS S++ DA++ALK+S+++F+SVW+CN ++
Sbjct: 1 MALSLLSYNVSDLCLGKPPLRCLSSSSSSVSDAIAALKSSEDTFLSVWNCNHDDDNNT-- 58
Query: 60 DACECQCVGKVCMVDVICYLCKDSNSLSPSL-ALKQPVSVLLPQLLPPLVMHVEPSCSLL 118
EC+C+GK+ M DVIC+L KD + SL AL VSVLLP+ +V+HV+PSCSL+
Sbjct: 59 ---ECECLGKISMADVICHLSKDHDH---SLCALNSSVSVLLPKT-RSIVLHVQPSCSLI 111
Query: 119 EAMDLMLGGAQNLVVPIKNRLSIKRKQQQKLSSSSLTNH-NGREFCWLTQEDIIRFILSS 177
EA+DL++ GAQNL+VPI + K+KQ S + T H NG+ FCW+TQEDII+F+L
Sbjct: 112 EAIDLIIKGAQNLIVPIHTKPYTKKKQHNDNVSVTTTTHSNGQRFCWITQEDIIQFLLGF 171
Query: 178 ISLFSPIPALSIDSLGIISTD--VVAVDYHSPASLALEAISRSLFDQTSVAVVDSDG--- 232
I+ FSP+PA+S+ LG+I++ VVAVDYHS AS + A+S +L QTSVAVVD +G
Sbjct: 172 IAAFSPLPAMSLSDLGVINSTHTVVAVDYHSSASAVVSAVSNALAVQTSVAVVDGEGDDP 231
Query: 233 --FLIGEISPSTLGCCDETVAAAITTLSAGDLMAYIDCGGPPEDLVRVVKERLKDKGLEG 290
LIGEISP TL CCDET AAA+ TLSAGDLMAYID PPE LV++V+ RL+DKGL G
Sbjct: 232 FTSLIGEISPMTLTCCDETAAAAVATLSAGDLMAYIDGANPPESLVQIVRNRLEDKGLIG 291
Query: 291 MLEHFDMSSSLMPYLSTSSSSDEESTATSKLTRSGKHSRSMSYSARMVRRAEAIVCHPTS 350
++ FD SS S+ SS+EE+ R+ + RSMS SARM R++EAIVC+P S
Sbjct: 292 LMSLFDSLSSYS--TSSGYSSEEEAPV-----RTTSYGRSMSSSARMARKSEAIVCNPKS 344
Query: 351 SLMAVMIQAIAHRVTYVWVIEDDCTLTGIVTFSDLLKVFRKHLET 395
SLMAVMIQA+AHRV Y WV+E D G+VTF D+LKVFRK LE
Sbjct: 345 SLMAVMIQAVAHRVNYAWVVEKDGCFVGMVTFVDILKVFRKFLEN 389
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q8GZA4|CBSX6_ARATH CBS domain-containing protein CBSX6 OS=Arabidopsis thaliana GN=CBSX6 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 114 bits (284), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 125/444 (28%), Positives = 201/444 (45%), Gaps = 91/444 (20%)
Query: 1 MAVSLLADEVSDLCLGKPALRALSISAAIADALSALKNSDESFISVWDCNCCSNHRKLGD 60
MA L V DL +GKP + + + A+ A+ S E I VW + +
Sbjct: 1 MASVFLYHVVGDLTVGKPEMVEFYETETVESAIRAIGESTECGIPVWRKRTTPSLPGFVE 60
Query: 61 ACECQ---CVGKVCMVDVICYLCKDSNSLSPSLALKQPVSVLLPQLLPP---LVMHVEPS 114
E + VG + +D++ +L K + L A+K PVS +++ P L+ V+P
Sbjct: 61 NSEMRQQRFVGILNSLDIVAFLAK-TECLQEEKAMKIPVS----EVVSPDNTLLKQVDPG 115
Query: 115 CSLLEAMDLMLGGAQNLVVP-------IKNRLSIKRKQQ------------------QKL 149
L++A+++M G + L+VP + R SI +
Sbjct: 116 TRLIDALEMMKQGVRRLLVPKSVVWRGMSKRFSILYNGKWLKNSENSSSSSGLSADSTNR 175
Query: 150 SSSSLTNHNGREFCWLTQEDIIRFILSSISLFSPIPALSIDSLGIISTDVVAVDYHSPAS 209
++S+T+ + FC L++ED+IRF++ + +P+P SI +LGII+ + ++ P
Sbjct: 176 PTTSMTSSRDK-FCCLSREDVIRFLIGVLGALAPLPLTSISTLGIINQNYNFIEASLP-- 232
Query: 210 LALEAISRSLFDQTSVAVVDS----DGF-LIGEISPSTLGCCD-ETVAAAITTLSAGDLM 263
A+EA R L D +++AV++ F +IGEIS S L CD A A+ L AG +
Sbjct: 233 -AIEATRRPLCDPSAIAVLEQTENEQQFKIIGEISASKLWKCDYLAAAWALANLYAGQFV 291
Query: 264 AYIDCGGPPEDLVRVVKERLKDKGLEGMLEHFDMSS-SLMPYLSTSSSSDEES-TATSKL 321
+ ED +MSS S +L TS E++ TAT+
Sbjct: 292 MGV------ED---------------------NMSSRSFSDFLQTSFPGGEQNGTATNAK 324
Query: 322 TRSGKHSRSMSYSA----------RMVR-RAEAIVCHPTSSLMAVMIQAIAHRVTYVWVI 370
S SRS+ ++ M R R+ + C +SSL AVM Q ++HR T+VWV
Sbjct: 325 KFS---SRSIGFNPTSPTRLSIGRSMYRGRSAPLTCKTSSSLAAVMAQMLSHRATHVWVT 381
Query: 371 EDDC--TLTGIVTFSDLLKVFRKH 392
E D L G+V + ++L K
Sbjct: 382 EADSDDVLVGVVGYGEILTAVTKQ 405
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q8GXI9|PV42B_ARATH SNF1-related protein kinase regulatory subunit gamma-like PV42b OS=Arabidopsis thaliana GN=PV42B PE=2 SV=1 | Back alignment and function description |
|---|
Score = 56.2 bits (134), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 84/401 (20%), Positives = 161/401 (40%), Gaps = 70/401 (17%)
Query: 5 LLADEVSDLCLGKPALRALSISAAIADALSALKNSDESFISV------W---DCNCCSNH 55
L+ +V DL + K L + +A + DAL+ + + + V W +
Sbjct: 7 LMQFKVKDLMIDKRRLVEVPDNATLGDALNTMVANRVRAVPVAAKPGQWLGAGGSMIVEL 66
Query: 56 RKLGDACECQCVGKVCMVDVICYLCKDSNSLSPSLALKQPVSVLL---PQLLPPLVMHVE 112
K + Q +G V M+DV+ ++ D + PVS ++ P+ L + +
Sbjct: 67 DKQSGSARKQYIGMVTMLDVVAHIAGDDGESGLDKKMAAPVSSIIGHCPEGLS--LWSLN 124
Query: 113 PSCSLLEAMDLMLGGAQNLVVPIKNRLSIKRKQQQKLSSSSLTNHNGREFCWLTQEDIIR 172
P+ S+++ M+++ G ++VP+ + + ++ L + + L+Q D+I
Sbjct: 125 PNTSIMDCMEMLSKGIHRVLVPLDS-------NTENITGPELVE-SASAYAMLSQMDLIS 176
Query: 173 FILSSISLFSPIPALSIDSLGIISTDVVAVDYHSPASLALEAISRSLFDQTSVAVVDSDG 232
F S I + ++ L I V+A+ + A++ +S ++ + +V +V++ G
Sbjct: 177 FFFDQSSQLHGILSHTVTDLSAIHNTVLALTSQARVKDAIQCMSIAMLN--AVPIVEASG 234
Query: 233 FLIGEISPSTLGCCDETVAAAITTLSAGDLMAYIDCGGPPEDLVRVVKERLKDKGLEGML 292
GE + + V + T SA DL KG
Sbjct: 235 E--GEDHKQLVDGKNRRV---VGTFSASDL-----------------------KGC---- 262
Query: 293 EHFDMSSSLMPYLSTSSSSDEESTATSKLTRSGKHSRSMSYSARMVRRAEAIVCHPTSSL 352
H S +P + K+ R+ + + S R E + CH TS+L
Sbjct: 263 -HLATLRSWLPLNALE--------FVEKIPRTLLFTAATSTPGR-----ELVTCHVTSTL 308
Query: 353 MAVMIQAIAHRVTYVWVIEDDCTLTGIVTFSDLLKVFRKHL 393
V+ RV VWV++ + L G+V+ +D++ V R L
Sbjct: 309 AQVIHMVTTKRVHRVWVVDQNGGLQGLVSLTDIIAVVRSAL 349
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Plays redundant role with PV42a in regulating male gametogenesis and pollen tube guidance. Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 397 | ||||||
| 224128366 | 411 | predicted protein [Populus trichocarpa] | 0.997 | 0.963 | 0.691 | 1e-154 | |
| 255575342 | 408 | conserved hypothetical protein [Ricinus | 0.994 | 0.968 | 0.7 | 1e-147 | |
| 224117210 | 401 | predicted protein [Populus trichocarpa] | 0.982 | 0.972 | 0.674 | 1e-145 | |
| 356544022 | 390 | PREDICTED: CBS domain-containing protein | 0.969 | 0.987 | 0.645 | 1e-136 | |
| 356549749 | 389 | PREDICTED: CBS domain-containing protein | 0.967 | 0.987 | 0.640 | 1e-133 | |
| 225461389 | 394 | PREDICTED: CBS domain-containing protein | 0.984 | 0.992 | 0.68 | 1e-133 | |
| 388520909 | 389 | unknown [Medicago truncatula] | 0.967 | 0.987 | 0.630 | 1e-128 | |
| 449447217 | 401 | PREDICTED: CBS domain-containing protein | 0.979 | 0.970 | 0.651 | 1e-123 | |
| 225470342 | 384 | PREDICTED: CBS domain-containing protein | 0.959 | 0.992 | 0.582 | 1e-115 | |
| 255556011 | 396 | conserved hypothetical protein [Ricinus | 0.984 | 0.987 | 0.54 | 1e-109 |
| >gi|224128366|ref|XP_002329144.1| predicted protein [Populus trichocarpa] gi|222869813|gb|EEF06944.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 549 bits (1415), Expect = e-154, Method: Compositional matrix adjust.
Identities = 285/412 (69%), Positives = 331/412 (80%), Gaps = 16/412 (3%)
Query: 1 MAVSLLADEVSDLCLGKPALRALSISAAIADALSALKNSDESFISVWDCNCC--SNHRKL 58
MAVSLLA EVSDLCLGKPALR+L+++ IA+AL ALKNSD++FISVW+C+ +N+
Sbjct: 1 MAVSLLAHEVSDLCLGKPALRSLALTTTIAEALFALKNSDDNFISVWNCDHAAKTNNDYK 60
Query: 59 G-------DACECQCVGKVCMVDVICYLCKDSNSLSPSLALKQPVSVLLPQLLPPLVMHV 111
G D CEC+CVGKV MVDV+CYLCKD N L PS ALK PVSVLLP++ P +V+HV
Sbjct: 61 GNCEEEGCDVCECKCVGKVSMVDVVCYLCKDENLLFPSDALKAPVSVLLPEI-PGMVVHV 119
Query: 112 EPSCSLLEAMDLMLGGAQNLVVPIKNRLSIKRKQQQKLSSSSLTNHNGREFCWLTQEDII 171
EP+ SLLEA+DL+L GA+NLVVPIK R S +RKQ QKLS +S T HNGREFCWLTQEDII
Sbjct: 120 EPTSSLLEAIDLILQGAKNLVVPIKTRYSTRRKQHQKLSITSPTIHNGREFCWLTQEDII 179
Query: 172 RFILSSISLFSPIPALSIDSLGIISTDVVAVDYHSPASLALEAISRSLFDQTSVAVVDSD 231
RF L SI LF+P+PALSID+LGIIST+ + +DYHSPA LEAISRSL D+TSVAV+DSD
Sbjct: 180 RFFLGSIGLFAPLPALSIDTLGIISTEFLTIDYHSPAISELEAISRSLADETSVAVIDSD 239
Query: 232 GFLIGEISPSTLGCCDETVAAAITTLSAGDLMAYIDCGGPPEDLVRVVKERLKDKGLEGM 291
G LIGE+SP TL CCD++VAAAITTLS+GDLMAYIDCGGPPEDLV+VV ERLK++GLE M
Sbjct: 240 GILIGELSPFTLACCDDSVAAAITTLSSGDLMAYIDCGGPPEDLVKVVMERLKERGLEAM 299
Query: 292 LEHFD------MSSSLMPYLSTSSSSDEESTATSKLTRSGKHSRSMSYSARMVRRAEAIV 345
L+ F +SS S+S ST S L RSGK+SRSMSYSARMVRRAEAIV
Sbjct: 300 LQEFTNSSCYSTTSSCQSQSSSSDEESASSTPVSTLHRSGKYSRSMSYSARMVRRAEAIV 359
Query: 346 CHPTSSLMAVMIQAIAHRVTYVWVIEDDCTLTGIVTFSDLLKVFRKHLETMA 397
CHP SSL+AVMIQAIAHRV YVWVIEDDC+L GIV F D+LKVFR+ LE MA
Sbjct: 360 CHPKSSLVAVMIQAIAHRVNYVWVIEDDCSLVGIVRFYDMLKVFRESLEDMA 411
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Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255575342|ref|XP_002528574.1| conserved hypothetical protein [Ricinus communis] gi|223532018|gb|EEF33829.1| conserved hypothetical protein [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 526 bits (1356), Expect = e-147, Method: Compositional matrix adjust.
Identities = 287/410 (70%), Positives = 334/410 (81%), Gaps = 15/410 (3%)
Query: 1 MAVSLLADEVSDLCLGKPALRALSISAAIADALSALKNSDESFISVWDCNCCSNHRKLGD 60
MAVSL A EVSDLCLGKPALR+L ++A +A+ALSALKNSD+SF+SVW+C+ + R G
Sbjct: 1 MAVSLFAHEVSDLCLGKPALRSLPVTATVAEALSALKNSDDSFLSVWNCDHITK-RNSGF 59
Query: 61 AC------ECQCVGKVCMVDVICYLCKDSNSLSPSLALKQPVSVLLPQLLPPLVMHVEPS 114
C EC+CVGKV +VDVICYLC+D N +SPS ALK PVSVLLP++ P LVMHVEPS
Sbjct: 60 NCDREDRDECKCVGKVSIVDVICYLCQDKNLVSPSDALKDPVSVLLPKI-PGLVMHVEPS 118
Query: 115 CSLLEAMDLMLGGAQNLVVPIKNRLSI---KRKQQQKLSSSSL---TNHNGREFCWLTQE 168
SL+EA+DL+L GAQNLVVPIK RLS +RKQQQKLS++S T H GREFCWL QE
Sbjct: 119 SSLVEAIDLILQGAQNLVVPIKTRLSSSNSRRKQQQKLSATSTGLTTIHKGREFCWLAQE 178
Query: 169 DIIRFILSSISLFSPIPALSIDSLGIISTDVVAVDYHSPASLALEAISRSLFDQTSVAVV 228
DIIRF LSSI LFSP+PALSIDSLGII+TD++ +DY+SPAS L AI+R+L QTSVAVV
Sbjct: 179 DIIRFFLSSIGLFSPVPALSIDSLGIITTDIITIDYNSPASATLGAINRALATQTSVAVV 238
Query: 229 DSD-GFLIGEISPSTLGCCDETVAAAITTLSAGDLMAYIDCGGPPEDLVRVVKERLKDKG 287
D D G LIGE+SP TL CCDETVAAAITTLS+GDLMAYIDCGGPPEDLVRVV RLK +G
Sbjct: 239 DGDEGILIGELSPFTLACCDETVAAAITTLSSGDLMAYIDCGGPPEDLVRVVMARLKHRG 298
Query: 288 LEGMLEHFDMSSSLMPYLSTSSSSDEESTATSKLTRSGKHSRSMSYSARMVRRAEAIVCH 347
LE ML+ F S++ + ST SSS + +T+ L RSGK+SRS SYSARMVRRAEAIVCH
Sbjct: 299 LEAMLQEFTNSTTSLVSFSTLSSSSSDEESTTTLHRSGKYSRSKSYSARMVRRAEAIVCH 358
Query: 348 PTSSLMAVMIQAIAHRVTYVWVIEDDCTLTGIVTFSDLLKVFRKHLETMA 397
P SSL+AVMIQAIAHRV YVWVIE+DC+L GIVTF ++LKVFR+HLE MA
Sbjct: 359 PKSSLVAVMIQAIAHRVNYVWVIEEDCSLVGIVTFCNMLKVFREHLEAMA 408
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Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224117210|ref|XP_002317509.1| predicted protein [Populus trichocarpa] gi|222860574|gb|EEE98121.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 519 bits (1337), Expect = e-145, Method: Compositional matrix adjust.
Identities = 275/408 (67%), Positives = 320/408 (78%), Gaps = 18/408 (4%)
Query: 1 MAVSLLADEVSDLCLGKPALRALSISAAIADALSALKNSDESFISVWDCNCCSNHRK--- 57
MAVSLLA E+SDLCLGKPALR+LS++ I + L ALKNSD++F+SVW C + K
Sbjct: 1 MAVSLLAREISDLCLGKPALRSLSLTTTITEVLFALKNSDDNFLSVWSCEHTAKTNKDYR 60
Query: 58 ---LGDAC---ECQCVGKVCMVDVICYLCKDSNSLSPSLALKQPVSVLLPQLLPPLVMHV 111
D C EC+CVGKV MVDVICYLCKD N LSPS ALK PVSVLLP++ P +V+HV
Sbjct: 61 GNCEEDGCDVGECKCVGKVSMVDVICYLCKDENLLSPSDALKAPVSVLLPEI-PGMVVHV 119
Query: 112 EPSCSLLEAMDLMLGGAQNLVVPIKNRLSI--KRKQQQKLSSSSLTNHNGREFCWLTQED 169
EP+ SLL+A+DL+L GA+NLVVPIK R S +RKQ QKLS +S T HNGREFCWLTQED
Sbjct: 120 EPTSSLLDAIDLILQGAKNLVVPIKTRYSSSSRRKQHQKLSITSPTIHNGREFCWLTQED 179
Query: 170 IIRFILSSISLFSPIPALSIDSLGIISTDVVAVDYHSPASLALEAISRSLFDQTSVAVVD 229
IIRF L SI LF+P+PALSID+LGIISTD + +DYHSPA LEAIS SL D+ SVA++D
Sbjct: 180 IIRFFLGSIGLFAPLPALSIDTLGIISTDYLTIDYHSPAISELEAISGSLADENSVAIID 239
Query: 230 SDGFLIGEISPSTLGCCDETVAAAITTLSAGDLMAYIDCGGPPEDLVRVVKERLKDKGLE 289
SDG LIGE+SP TL CCDE+VAAAITTLS+GDLMAYIDCGGPP+DLV +V RLK +GLE
Sbjct: 240 SDGILIGELSPFTLACCDESVAAAITTLSSGDLMAYIDCGGPPDDLVNLVMTRLKGRGLE 299
Query: 290 GMLEHFDMSSSLMPYLSTSSSSDEESTATSKLTRSGKHSRSMSYSARMVRRAEAIVCHPT 349
ML+ F SS S++S ST S L R GK+SRSMSYSARMVRRAEAIVCHP
Sbjct: 300 AMLQEFTNSS------CYSTTSSWSSTPFSALQRPGKYSRSMSYSARMVRRAEAIVCHPK 353
Query: 350 SSLMAVMIQAIAHRVTYVWVIEDDCTLTGIVTFSDLLKVFRKHLETMA 397
SSL+AVMIQAIAHR+ YVWVIEDDC+L GIV F D+LKVFR+ +E MA
Sbjct: 354 SSLVAVMIQAIAHRLNYVWVIEDDCSLVGIVRFCDVLKVFRESIEDMA 401
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Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356544022|ref|XP_003540455.1| PREDICTED: CBS domain-containing protein CBSX5-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 491 bits (1263), Expect = e-136, Method: Compositional matrix adjust.
Identities = 259/401 (64%), Positives = 318/401 (79%), Gaps = 16/401 (3%)
Query: 1 MAVSLLADEVSDLCLGKPALRALSISAAIADALSALKNSD-ESFISVWDCNCCSNHRKLG 59
MAVS LA +VSDLCLGKP LR+LS +A +ADAL ALK+SD E +SVW S ++G
Sbjct: 1 MAVSFLARDVSDLCLGKPPLRSLSAAATVADALDALKSSDGEIHVSVW-----SFENEVG 55
Query: 60 DACECQCVGKVCMVDVICYLCKDSNSLSPSLALKQPVSVLLPQLLPPLVMHVEPSCSLLE 119
+CVGK+CMVDVICYLC++ N LSPS +LK+P+S +LP+ LV+H++PS SLLE
Sbjct: 56 -----RCVGKLCMVDVICYLCREDNLLSPSKSLKEPLSSILPKD-HNLVVHLQPSSSLLE 109
Query: 120 AMDLMLGGAQNLVVPI---KNRLSIKRKQQQKLSSSSLTNHNGREFCWLTQEDIIRFILS 176
A+DL+L GAQN VVPI K +RKQQ + +SS++ +H+ EFCWLTQED+IRF+L
Sbjct: 110 AIDLILQGAQNFVVPILPTKRSGVSRRKQQHQKASSTINSHSSCEFCWLTQEDVIRFLLG 169
Query: 177 SISLFSPIPALSIDSLGIISTDVVAVDYHSPASLALEAISRSLFDQTSVAVVDSDGFLIG 236
SI +F+P+PALSIDSLGI+S+DV+A+DY+SPAS + AIS+SL QTSVA+VDSDG IG
Sbjct: 170 SIGVFTPLPALSIDSLGIVSSDVLAIDYYSPASSTVGAISKSLAQQTSVAIVDSDGTFIG 229
Query: 237 EISPSTLGCCDETVAAAITTLSAGDLMAYIDCGGPPEDLVRVVKERLKDKGLEGMLEHFD 296
EISP TL CCDETVAAA+ TLSAGDLMAYIDCGGPPEDLVRVVK RLK+K LE ML+ F
Sbjct: 230 EISPFTLACCDETVAAAMATLSAGDLMAYIDCGGPPEDLVRVVKARLKEKNLEKMLQEFT 289
Query: 297 MSSSLMPYLSTSSSSDEESTATSKL-TRSGKHSRSMSYSARMVRRAEAIVCHPTSSLMAV 355
+ SS SSSS + +T++ RSG+ +RS SYSARMVR+AEAIVCHP SSL+AV
Sbjct: 290 ILSSCESSQLASSSSSSDEESTTRTPARSGRLARSSSYSARMVRKAEAIVCHPKSSLVAV 349
Query: 356 MIQAIAHRVTYVWVIEDDCTLTGIVTFSDLLKVFRKHLETM 396
MIQAIAHRV Y+WVIEDDC+L GIVTFS++LKVFR+HLETM
Sbjct: 350 MIQAIAHRVNYLWVIEDDCSLVGIVTFSNMLKVFREHLETM 390
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356549749|ref|XP_003543253.1| PREDICTED: CBS domain-containing protein CBSX5-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 481 bits (1238), Expect = e-133, Method: Compositional matrix adjust.
Identities = 257/401 (64%), Positives = 321/401 (80%), Gaps = 17/401 (4%)
Query: 1 MAVSLLADEVSDLCLGKPALRALSISAAIADALSALKNSD-ESFISVWDCNCCSNHRKLG 59
MAVS LA +VSDLCLGKP LR+LS +A +ADAL+ALK+SD E+ +S+W + C N
Sbjct: 1 MAVSFLARDVSDLCLGKPPLRSLSAAATVADALAALKSSDHETHVSLW--SFCENKN--- 55
Query: 60 DACECQCVGKVCMVDVICYLCKDSNSLSPSLALKQPVSVLLPQLLPPLVMHVEPSCSLLE 119
E +CVGK+CMVDVICYLC++ N LSPS ALK+P+S +LP+ LV+H++PS SL E
Sbjct: 56 ---EVRCVGKLCMVDVICYLCREDNLLSPSKALKEPLSSILPKD-QSLVVHLQPSSSLFE 111
Query: 120 AMDLMLGGAQNLVVPI----KNRLSIKRKQQQKLSSSSLTNHNGREFCWLTQEDIIRFIL 175
A+DL+L GAQNLVVPI ++ +S +++QQ + +SS++ +H+ EFCWLTQED+IRF+L
Sbjct: 112 AIDLILQGAQNLVVPILPTKRSGVSRRKQQQHQKASSTINSHSSCEFCWLTQEDVIRFLL 171
Query: 176 SSISLFSPIPALSIDSLGIISTDVVAVDYHSPASLALEAISRSLFDQTSVAVVDSDGFLI 235
SI +F+P+PALSIDSLGIIS+DV+A+DY+SPAS A+ AIS+SL QTSVA+VDSDG I
Sbjct: 172 GSIGVFTPLPALSIDSLGIISSDVLAIDYYSPASSAVGAISKSLTQQTSVAIVDSDGTFI 231
Query: 236 GEISPSTLGCCDETVAAAITTLSAGDLMAYIDCGGPPEDLVRVVKERLKDKGLEGMLEHF 295
GEISP TL CCDETVAAAI TLSAGDLMAYIDCGGPPEDLVR+VK RLK+K E ML+ F
Sbjct: 232 GEISPFTLACCDETVAAAIATLSAGDLMAYIDCGGPPEDLVRLVKARLKEKNFEKMLQEF 291
Query: 296 DMSSSLMPYLSTSSSSDEESTATSKLTRSGKHSRSMSYSARMVRRAEAIVCHPTSSLMAV 355
+ L S+ S+S +E T RSG+ +RS SYSARMVR+AEAIVCHP SSL+AV
Sbjct: 292 TI---LSSCESSQSTSSDEELPTRTPARSGRLARSSSYSARMVRKAEAIVCHPKSSLVAV 348
Query: 356 MIQAIAHRVTYVWVIEDDCTLTGIVTFSDLLKVFRKHLETM 396
MIQAIAHRV Y+WVIEDDC+L GIVTFS++LKVFR+HLET+
Sbjct: 349 MIQAIAHRVNYLWVIEDDCSLVGIVTFSNMLKVFREHLETI 389
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225461389|ref|XP_002284800.1| PREDICTED: CBS domain-containing protein CBSX5 [Vitis vinifera] gi|302143038|emb|CBI20333.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 481 bits (1237), Expect = e-133, Method: Compositional matrix adjust.
Identities = 272/400 (68%), Positives = 318/400 (79%), Gaps = 9/400 (2%)
Query: 1 MAVSLLADEVSDLCLGKPALRALSISAAIADALSALKNSDESFISVWDCNCCSNHRKLGD 60
MA SLLA VSDLCLGKPALR+LSISA + +ALSALK S++SFISVW C+ +N +
Sbjct: 1 MAFSLLAHVVSDLCLGKPALRSLSISATVGEALSALKTSEDSFISVWSCDHSANIQD--- 57
Query: 61 ACECQCVGKVCMVDVICYLCKDSNSLSPSLALKQPVSVLLPQLLPPLVMHVEPSCSLLEA 120
EC+CVGK+CMVDV+CYLCKD N LSPS ALK PVS LLP + P LVMHVEP SLLEA
Sbjct: 58 --ECRCVGKICMVDVVCYLCKDDNLLSPSSALKSPVSDLLPNI-PGLVMHVEPHSSLLEA 114
Query: 121 MDLMLGGAQNLVVPIKNRLSIKR--KQQQKLSSSSLTNHNGREFCWLTQEDIIRFILSSI 178
+DL+L GAQNLVVPI++ +S K QK +S T H G E+CWLTQED++R++LSSI
Sbjct: 115 IDLILQGAQNLVVPIRSSISNSSRRKLYQKPQTSPTTMHKGCEYCWLTQEDVVRYLLSSI 174
Query: 179 SLFSPIPALSIDSLGIISTDVVAVDYHSPASLALEAISRSLFDQTSVAVVDSDGFLIGEI 238
L SPI AL ID+L II TDV+A++YHSPAS +L AI RSL DQTSVAVVD +G LIGEI
Sbjct: 175 GLLSPIAALPIDTLRIIDTDVLAINYHSPASSSLPAILRSLRDQTSVAVVDENGALIGEI 234
Query: 239 SPSTLGCCDETVAAAITTLSAGDLMAYIDCGGPPEDLVRVVKERLKDKGLEGMLEHFDMS 298
SP TL CCDETVAAAITTLS+GDLM+YIDCGGPPE++V+ VK RLK + LEGMLE F +
Sbjct: 235 SPFTLACCDETVAAAITTLSSGDLMSYIDCGGPPEEIVKTVKTRLKQRNLEGMLEEFALD 294
Query: 299 SSLMPYLSTSSSSDEESTAT-SKLTRSGKHSRSMSYSARMVRRAEAIVCHPTSSLMAVMI 357
SS LS SSS +E S + + L R GK+SRS SYSARMVRRAEAIVCHP SSL+AVMI
Sbjct: 295 SSSTSSLSASSSDEESSPSPKTALYRPGKYSRSSSYSARMVRRAEAIVCHPGSSLVAVMI 354
Query: 358 QAIAHRVTYVWVIEDDCTLTGIVTFSDLLKVFRKHLETMA 397
QAIAHRV YVWVIEDDC L GIVTFS +LK+FR+HL++MA
Sbjct: 355 QAIAHRVNYVWVIEDDCCLAGIVTFSSMLKIFREHLQSMA 394
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|388520909|gb|AFK48516.1| unknown [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 463 bits (1192), Expect = e-128, Method: Compositional matrix adjust.
Identities = 253/401 (63%), Positives = 313/401 (78%), Gaps = 17/401 (4%)
Query: 1 MAVSLLADEVSDLCLGKPALRALSISAAIADALSALKNSD-ESFISVWDCNCCSNHRKLG 59
M V L+ E+SDLCLGKP L++LS SA +A+A+ L++S ESF+SVW+C+ H + G
Sbjct: 1 MEVFFLSHELSDLCLGKPPLKSLSTSATVAEAIEVLRSSGGESFVSVWNCD----HSEFG 56
Query: 60 DACECQCVGKVCMVDVICYLCKDSNSLSPSLALKQPVSVLLPQLLPPLVMHVEPSCSLLE 119
+CQCVGK+CMVDVI +LCK N L PS ALK +S + ++ LV+H+EPS SLL+
Sbjct: 57 ---QCQCVGKICMVDVIVFLCKQENLLCPSKALKASISNVFNEV-DGLVVHLEPSSSLLD 112
Query: 120 AMDLMLGGAQNLVVPI----KNRLSIKRKQQQKLSSSSLTNHNGREFCWLTQEDIIRFIL 175
A+DL+L GAQNLVVPI K LS +RK QQK S ++ +HNG EFCWLTQED+IRF+L
Sbjct: 113 AIDLILEGAQNLVVPISQTKKGGLS-RRKLQQK--SLTINSHNGAEFCWLTQEDVIRFLL 169
Query: 176 SSISLFSPIPALSIDSLGIISTDVVAVDYHSPASLALEAISRSLFDQTSVAVVDSDGFLI 235
SI FS +PA SID L IIS+DV+++DY SPAS A+EAIS+SL QTSVA+VD DG I
Sbjct: 170 GSIGRFSALPAQSIDRLNIISSDVLSIDYSSPASSAVEAISKSLTQQTSVAIVDGDGTFI 229
Query: 236 GEISPSTLGCCDETVAAAITTLSAGDLMAYIDCGGPPEDLVRVVKERLKDKGLEGMLEHF 295
GEISP TL CCDETVAAAITTLSAG LMAYIDCG PPEDLVRVVK RLK+K LE +L+ F
Sbjct: 230 GEISPFTLACCDETVAAAITTLSAGGLMAYIDCGRPPEDLVRVVKARLKEKNLEKLLQEF 289
Query: 296 DMSSSLMPYLSTSSSSDEESTATSKLTRSGKHSRSMSYSARMVRRAEAIVCHPTSSLMAV 355
+ +SL +S+SSSSDEES S LTRSGK++RS SYSA+ VR+AEAIVCHP SSL+AV
Sbjct: 290 TLMTSLTGDMSSSSSSDEESPGRS-LTRSGKYARSSSYSAKYVRKAEAIVCHPKSSLIAV 348
Query: 356 MIQAIAHRVTYVWVIEDDCTLTGIVTFSDLLKVFRKHLETM 396
M+QAIA+RV Y+WVIEDD +L GIVTFS++LKVF++ LE +
Sbjct: 349 MMQAIANRVNYLWVIEDDWSLVGIVTFSNILKVFKERLEVI 389
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449447217|ref|XP_004141365.1| PREDICTED: CBS domain-containing protein CBSX5-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 448 bits (1152), Expect = e-123, Method: Compositional matrix adjust.
Identities = 264/405 (65%), Positives = 310/405 (76%), Gaps = 16/405 (3%)
Query: 1 MAVSLLADEVSDLCLGKPALRALSISAAIADALSALKNSDESFISVWDCNC----CSNHR 56
MAVSL + +VSDLCLGKP LR LS+SA +ADAL AL+ S + F+SVWDC C+
Sbjct: 1 MAVSLFSHDVSDLCLGKPPLRPLSLSATLADALLALQFSHDYFVSVWDCRLPKRGCTGAV 60
Query: 57 KLGDACE----CQCVGKVCMVDVICYLCKDSNSLSPSLALKQPVSVLLPQLLPPLVMHVE 112
G A C+CVGK+CMVDVICYLCK+ N LSPS AL+ VS +LPQ+ P +VMH+E
Sbjct: 61 DGGAAGGDFECCRCVGKLCMVDVICYLCKEENLLSPSSALQASVSEILPQI-PGIVMHLE 119
Query: 113 PSCSLLEAMDLMLGGAQNLVVPIKNRL-SIKRKQQQKLSSSSLTNHNGREFCWLTQEDII 171
PS SLLEA+DL+L GAQNLVVPIK RL S R++Q K S++ + H G EFCWLTQEDII
Sbjct: 120 PSASLLEAIDLVLQGAQNLVVPIKTRLGSNSRRKQLKNSTNGI--HGGHEFCWLTQEDII 177
Query: 172 RFILSSISLFSPIPALSIDSLGIISTDVVAVDYHSPASLALEAISRSLFDQTSVAVVDSD 231
R++L SI LFSPI ALS+DSLGII T+ ++V+YHSPAS A+ AIS S+ +QTSVAV+D D
Sbjct: 178 RYLLGSIGLFSPIAALSLDSLGIICTNALSVNYHSPASSAIGAISHSITNQTSVAVIDGD 237
Query: 232 GFLIGEISPSTLGCCDETVAAAITTLSAGDLMAYIDCGGPPEDLVRVVKERLKDKGLEGM 291
G LIGEISP L CD+ VAAAI TLS+GDLMAYIDCGGPPEDLV+VVK RLKD LEGM
Sbjct: 238 GILIGEISPFALAGCDKAVAAAIMTLSSGDLMAYIDCGGPPEDLVKVVKARLKDSKLEGM 297
Query: 292 LEHFDMS-SSLMPYLSTSSSSDEESTATSKLTRSGKHSRSMSYSARMVRRAEAIVCHPTS 350
LE F S SS+ TSSSSDEE + + R RS SYSAR+ RRAEAIVCHP S
Sbjct: 298 LEEFTNSPSSIGSPSFTSSSSDEEFSPSPSSRRY---RRSSSYSARITRRAEAIVCHPRS 354
Query: 351 SLMAVMIQAIAHRVTYVWVIEDDCTLTGIVTFSDLLKVFRKHLET 395
SL+AVMIQAI HRV YVWVIEDDC+L G+VTF D+LKVFR+HLET
Sbjct: 355 SLVAVMIQAITHRVNYVWVIEDDCSLIGMVTFLDMLKVFREHLET 399
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225470342|ref|XP_002269338.1| PREDICTED: CBS domain-containing protein CBSX5 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 421 bits (1083), Expect = e-115, Method: Compositional matrix adjust.
Identities = 233/400 (58%), Positives = 300/400 (75%), Gaps = 19/400 (4%)
Query: 1 MAVSLLADEVSDLCLGKPALRALSISAAIADALSALKNSDESFISVWDCNCCS--NHRKL 58
MAVSLL EVSDLCLGKPALR+L +SA +ADAL+ALK S ++++SVW C+ S N L
Sbjct: 1 MAVSLLGHEVSDLCLGKPALRSLPVSATVADALAALKRSGDAYLSVWSCDHTSKINKSHL 60
Query: 59 GDACECQCVGKVCMVDVICYLCKDSNSLSPSLALKQPVSVLLPQLLPPLVMHVEPSCSLL 118
D C+C+GK+CMVDV+C+LC++ N PS AL+ P+S+LLP++ P LV H++P+ LL
Sbjct: 61 ED---CRCIGKICMVDVVCFLCREDNLSCPSDALQSPLSLLLPKV-PGLVRHLKPNSRLL 116
Query: 119 EAMDLMLGGAQNLVVPIKNRLSIKRKQQQKLSSSSLTNHNGREFCWLTQEDIIRFILSSI 178
EA+DLML GAQN+V+PI++R + ++K K S +S T HNG EFCWLTQED++RF+L+SI
Sbjct: 117 EAIDLMLEGAQNIVIPIQSRTNPRKKLVPKPSFNS-TLHNGVEFCWLTQEDVVRFLLNSI 175
Query: 179 SLFSPIPALSIDSLGIIST-DVVAVDYHSPASLALEAISRSLFDQTSVAVVDSDGFLIGE 237
FSP+P L+I+SL II T ++ +V YH PAS AL AIS+SL +QTSVAV+D + L+GE
Sbjct: 176 GSFSPLPGLTIESLNIIDTENIPSVYYHDPASSALTAISQSLINQTSVAVLDQENKLVGE 235
Query: 238 ISPSTLGCCDETVAAAITTLSAGDLMAYIDCGGPPEDLVRVVKERLKDKGLEGMLEHFDM 297
ISP TL CCDETVAAAI TLSAGDLMAYIDCGGPPEDLV++VK RL+++ L L+
Sbjct: 236 ISPFTLACCDETVAAAIATLSAGDLMAYIDCGGPPEDLVQLVKARLEERKLGAFLD---- 291
Query: 298 SSSLMPYLSTSSSSDEESTATSKLTRSGKHSRSMSYSARMVRRAEAIVCHPTSSLMAVMI 357
L S S+++ + G+ S YSARM RR+EAIVC+P SSLMAVMI
Sbjct: 292 -------LMDEEFSYSSSSSSDEEFGFGRRGGSGKYSARMARRSEAIVCYPWSSLMAVMI 344
Query: 358 QAIAHRVTYVWVIEDDCTLTGIVTFSDLLKVFRKHLETMA 397
QA+AHRV+YVWVIE+D +L GIVTFS + KVFR+HL T A
Sbjct: 345 QALAHRVSYVWVIEEDWSLAGIVTFSGIFKVFRQHLRTQA 384
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255556011|ref|XP_002519040.1| conserved hypothetical protein [Ricinus communis] gi|223541703|gb|EEF43251.1| conserved hypothetical protein [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 401 bits (1030), Expect = e-109, Method: Compositional matrix adjust.
Identities = 216/400 (54%), Positives = 289/400 (72%), Gaps = 9/400 (2%)
Query: 1 MAVSLLADEVSDLCLGKPALRALSISAAIADALSALKNSDESFISVWDCN---CCSNHRK 57
MAVSLLA EVSDLCLGKPALR+LS+SA +A+ALS LK SD+ ++SVW C+ +
Sbjct: 1 MAVSLLAREVSDLCLGKPALRSLSVSATVAEALSGLKRSDDPYLSVWSCDHNNKKNYINN 60
Query: 58 LGDACECQCVGKVCMVDVICYLCKDSNSLSPSLALKQPVSVLLPQLLPPLVMHVEPSCSL 117
++ EC+C+GK+CMVD+I +LCK+ N + AL++P+S +L + LV +EP SL
Sbjct: 61 NNNSNECRCIGKICMVDIISFLCKEENLKNLPRALQEPLSSVLVSKVYGLVRPLEPHASL 120
Query: 118 LEAMDLMLGGAQNLVVPIKNRLSIKRKQQQKLSSSSLTNHNGREFCWLTQEDIIRFILSS 177
LEA+DL+L GAQNLV+P+ + + RK+ +SS T HN RE+CWLTQEDIIR++L+
Sbjct: 121 LEAIDLILEGAQNLVIPVHSPFT--RKKLIHRTSSYSTLHNNREYCWLTQEDIIRYLLNC 178
Query: 178 ISLFSPIPALSIDSLGIISTD-VVAVDYHSPASLALEAISRSLFDQTSVAVVDSDGFLIG 236
I LFSPIP +++SL II T+ ++AV Y PAS AL IS+SL QTSVA++D +G LIG
Sbjct: 179 IGLFSPIPNHTVESLNIIDTESILAVCYDEPASSALPLISQSLVKQTSVAILDIEGKLIG 238
Query: 237 EISPSTLGCCDETVAAAITTLSAGDLMAYIDCGGPPEDLVRVVKERLKDKGLEGMLEHFD 296
EISP TL CDE VAAAI TLSAG+LMAY+DCG PPEDL+R+VKERL+++ LE +LE +
Sbjct: 239 EISPYTLNSCDELVAAAIATLSAGELMAYVDCGDPPEDLIRLVKERLEERNLEIVLELME 298
Query: 297 MSSSLMPYLSTSSSSDEESTATSKLTRSGKHSRSMSYSARMVRRAEAIVCHPTSSLMAVM 356
S + S+ SS S L +SG +S R+ RR +AIVC P SSL+AVM
Sbjct: 299 EESGISSSSSSFSSFSSSSDEEFGLGKSGSFR---GHSTRVARRTDAIVCFPWSSLVAVM 355
Query: 357 IQAIAHRVTYVWVIEDDCTLTGIVTFSDLLKVFRKHLETM 396
IQAI+HR +YVWV+E+D TL G+VTF+ +LKVFR+ +++M
Sbjct: 356 IQAISHRASYVWVVEEDGTLVGVVTFTGMLKVFRERVKSM 395
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 397 | ||||||
| TAIR|locus:2123999 | 391 | CBSX5 "AT4G27460" [Arabidopsis | 0.954 | 0.969 | 0.459 | 6.4e-83 | |
| TAIR|locus:2164027 | 408 | AT5G53750 "AT5G53750" [Arabido | 0.589 | 0.573 | 0.477 | 1.2e-51 | |
| TAIR|locus:2206265 | 425 | CBSX6 "AT1G65320" [Arabidopsis | 0.153 | 0.143 | 0.390 | 1e-12 |
| TAIR|locus:2123999 CBSX5 "AT4G27460" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 831 (297.6 bits), Expect = 6.4e-83, P = 6.4e-83
Identities = 185/403 (45%), Positives = 232/403 (57%)
Query: 1 MAVSLLADEVSDLCLGKPXXX-XXXXXXXXXXXXXXXKNSDESFISVWDCNCCSNHRKLG 59
MA+SLL+ VSDLCLGKP K+S+++F+SVW+CN ++
Sbjct: 1 MALSLLSYNVSDLCLGKPPLRCLSSSSSSVSDAIAALKSSEDTFLSVWNCNHDDDNNT-- 58
Query: 60 DACECQCVGKVCMVDVICYLCKDSNSLSPSLAXXXXXXXXXXXXXXXXXMHVEPSCSLLE 119
EC+C+GK+ M DVIC+L KD + SL +HV+PSCSL+E
Sbjct: 59 ---ECECLGKISMADVICHLSKDHDH---SLCALNSSVSVLLPKTRSIVLHVQPSCSLIE 112
Query: 120 AMDLMLGGAQNLVVPIKNXXXXXXXXXXXXXXXXXTNH-NGREFCWLTQEDXXXXXXXXX 178
A+DL++ GAQNL+VPI T H NG+ FCW+TQED
Sbjct: 113 AIDLIIKGAQNLIVPIHTKPYTKKKQHNDNVSVTTTTHSNGQRFCWITQEDIIQFLLGFI 172
Query: 179 XXXXXXXXXXXDSLGIISTD--VVAVDYHSPASLALEAISRSLFDQTSVAVVDSDG---F 233
LG+I++ VVAVDYHS AS + A+S +L QTSVAVVD +G F
Sbjct: 173 AAFSPLPAMSLSDLGVINSTHTVVAVDYHSSASAVVSAVSNALAVQTSVAVVDGEGDDPF 232
Query: 234 --LIGEISPSTLGCCDETVAAAITTLSAGDLMAYIDCGGPPEDLVRVVKERLKDKGLEGM 291
LIGEISP TL CCDET AAA+ TLSAGDLMAYID PPE LV++V+ RL+DKGL G+
Sbjct: 233 TSLIGEISPMTLTCCDETAAAAVATLSAGDLMAYIDGANPPESLVQIVRNRLEDKGLIGL 292
Query: 292 LEHFDXXXXXXXXXXXXXXXXXXXXXXXKLTRSGKHSRSMSYSARMVRRAEAIVCHPTSS 351
+ FD R+ + RSMS SARM R++EAIVC+P SS
Sbjct: 293 MSLFDSLSSYSTSSGYSSEEEAP-------VRTTSYGRSMSSSARMARKSEAIVCNPKSS 345
Query: 352 LMAVMIQAIAHRVTYVWVIEDDCTLTGIVTFSDLLKVFRKHLE 394
LMAVMIQA+AHRV Y WV+E D G+VTF D+LKVFRK LE
Sbjct: 346 LMAVMIQAVAHRVNYAWVVEKDGCFVGMVTFVDILKVFRKFLE 388
|
|
| TAIR|locus:2164027 AT5G53750 "AT5G53750" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 536 (193.7 bits), Expect = 1.2e-51, P = 1.2e-51
Identities = 119/249 (47%), Positives = 155/249 (62%)
Query: 155 TNHNGREFCWLTQEDXXXXXXXXXXXXXXXXXXXXDSLGIISTD--VVAVDYHSPASLAL 212
T+ N REFCW+TQED LG+I++ ++AVDY+S A+ A+
Sbjct: 163 THKNSREFCWITQEDIIRFLLDSISVFSPLPSLSISDLGVINSTHTILAVDYYSSAASAV 222
Query: 213 EAISRSLFDQTSVAVV----DSDG---FLIGEISPSTLGCCDETVAAAITTLSAGDLMAY 265
AISR++ D SVAVV D + LIGEISP TL CCDET AA+ TLSAGDLM+Y
Sbjct: 223 SAISRAILDNVSVAVVGKGCDQEDPCMVLIGEISPMTLACCDETAVAAVATLSAGDLMSY 282
Query: 266 IDCGGPPEDLVRVVKERLKDKGLEGMLEHFDXXXXXXXXXXXXXXXXXXXXXXXKLTRSG 325
ID GPPE LV VV+ RL+DKG+ G++ D ++T S
Sbjct: 283 IDGSGPPESLVGVVRNRLEDKGMVGLISLIDSLSLSSGSSSDEESPAGKT----RMTSS- 337
Query: 326 KHSRSMSYSARMVRRAEAIVCHPTSSLMAVMIQAIAHRVTYVWVIEDDCTLTGIVTFSDL 385
+ RS+S +ARM R++ AIVC+ SSLMAVMIQAIAHRV+YVWVI++D L G+VTF D+
Sbjct: 338 -YGRSVSSAARMARKSVAIVCNRKSSLMAVMIQAIAHRVSYVWVIDEDGCLIGMVTFVDI 396
Query: 386 LKVFRKHLE 394
LK+FR+ L+
Sbjct: 397 LKLFREFLD 405
|
|
| TAIR|locus:2206265 CBSX6 "AT1G65320" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 110 (43.8 bits), Expect = 1.0e-12, Sum P(3) = 1.0e-12
Identities = 25/64 (39%), Positives = 36/64 (56%)
Query: 331 MSYSARMVR-RAEAIVCHPTSSLMAVMIQAIAHRVTYVWVIEDDC--TLTGIVTFSDLLK 387
+S M R R+ + C +SSL AVM Q ++HR T+VWV E D L G+V + ++L
Sbjct: 341 LSIGRSMYRGRSAPLTCKTSSSLAAVMAQMLSHRATHVWVTEADSDDVLVGVVGYGEILT 400
Query: 388 VFRK 391
K
Sbjct: 401 AVTK 404
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 397 | |||
| cd04627 | 123 | cd04627, CBS_pair_14, The CBS domain, named after | 1e-05 | |
| cd04642 | 126 | cd04642, CBS_pair_29, The CBS domain, named after | 5e-04 | |
| cd02205 | 113 | cd02205, CBS_pair, The CBS domain, named after hum | 0.002 | |
| pfam00571 | 57 | pfam00571, CBS, CBS domain | 0.003 |
| >gnl|CDD|239999 cd04627, CBS_pair_14, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Score = 43.8 bits (104), Expect = 1e-05
Identities = 31/132 (23%), Positives = 57/132 (43%), Gaps = 24/132 (18%)
Query: 111 VEPSCSLLEAMDLMLGGAQNLVVPIKNRLSIKRKQQQKLSSSSLTNHNGREFCWLTQEDI 170
V + SL +A++++ G + V + S + L+Q +
Sbjct: 6 VPSTASLFQAIEILGSGGIH-RVAVTEE-----------ESGEVIG-------ILSQRRL 46
Query: 171 IRFILSSISLFS---PIPALSIDSLGIISTDVVAVDYHSPASLALEAISRSLFDQTSVAV 227
+ F+ + F P+ + + L I ++DV++++ P AL + +SVAV
Sbjct: 47 VEFLWENARSFPGLDPLYPIPLRDLTIGTSDVISINGDQPLIDALHLMHNE--GISSVAV 104
Query: 228 VDSDGFLIGEIS 239
VD+ G LIG IS
Sbjct: 105 VDNQGNLIGNIS 116
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 123 |
| >gnl|CDD|240013 cd04642, CBS_pair_29, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Score = 39.2 bits (92), Expect = 5e-04
Identities = 14/47 (29%), Positives = 31/47 (65%)
Query: 342 EAIVCHPTSSLMAVMIQAIAHRVTYVWVIEDDCTLTGIVTFSDLLKV 388
I C P+S+L V+ + +A++V VWV++++ G++T +D++ +
Sbjct: 80 PLITCTPSSTLKEVITKLVANKVHRVWVVDEEGKPIGVITLTDIISI 126
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 126 |
| >gnl|CDD|239067 cd02205, CBS_pair, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Score = 37.4 bits (87), Expect = 0.002
Identities = 26/133 (19%), Positives = 50/133 (37%), Gaps = 28/133 (21%)
Query: 111 VEPSCSLLEAMDLMLGGAQNLVVPIKNRLSIKRKQQQKLSSSSLTNHNGREFCWLTQEDI 170
V P ++ EA+ LML + +P+ + +GR +T+ D+
Sbjct: 6 VSPDDTVAEALRLMLEHGIS-GLPV-------------------VDDDGRLVGIVTERDL 45
Query: 171 IRFILSSISLFSPIPALSIDSLGIISTDVVAVDYHSPASLALEAISRSLFDQTSVAVVDS 230
+R + +++ DVV V + A E + + VVD
Sbjct: 46 LRALAEGGLDPLVTVG------DVMTRDVVTVSPDTSLEEAAELMLEH--GIRRLPVVDD 97
Query: 231 DGFLIGEISPSTL 243
+G L+G ++ S +
Sbjct: 98 EGRLVGIVTRSDI 110
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 113 |
| >gnl|CDD|201313 pfam00571, CBS, CBS domain | Back alignment and domain information |
|---|
Score = 35.6 bits (83), Expect = 0.003
Identities = 13/50 (26%), Positives = 26/50 (52%)
Query: 342 EAIVCHPTSSLMAVMIQAIAHRVTYVWVIEDDCTLTGIVTFSDLLKVFRK 391
+ + P +SL + + ++ + V+++D L GIVT DLL+ +
Sbjct: 8 DVVTVPPDTSLEEALELMRENGISRLPVVDEDGKLVGIVTLRDLLRALLE 57
|
CBS domains are small intracellular modules that pair together to form a stable globular domain. This family represents a single CBS domain. Pairs of these domains have been termed a Bateman domain. CBS domains have been shown to bind ligands with an adenosyl group such as AMP, ATP and S-AdoMet. CBS domains are found attached to a wide range of other protein domains suggesting that CBS domains may play a regulatory role making proteins sensitive to adenosyl carrying ligands. The region containing the CBS domains in Cystathionine-beta synthase is involved in regulation by S-AdoMet. CBS domain pairs from AMPK bind AMP or ATP. The CBS domains from IMPDH and the chloride channel CLC2 bind ATP. Length = 57 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 397 | |||
| KOG1764 | 381 | consensus 5'-AMP-activated protein kinase, gamma s | 99.98 | |
| COG3448 | 382 | CBS-domain-containing membrane protein [Signal tra | 99.73 | |
| COG2524 | 294 | Predicted transcriptional regulator, contains C-te | 99.7 | |
| COG2524 | 294 | Predicted transcriptional regulator, contains C-te | 99.66 | |
| cd04618 | 98 | CBS_pair_5 The CBS domain, named after human CBS, | 99.61 | |
| cd04641 | 120 | CBS_pair_28 The CBS domain, named after human CBS, | 99.58 | |
| PRK14869 | 546 | putative manganese-dependent inorganic pyrophospha | 99.56 | |
| cd04603 | 111 | CBS_pair_KefB_assoc This cd contains two tandem re | 99.54 | |
| cd04614 | 96 | CBS_pair_1 The CBS domain, named after human CBS, | 99.53 | |
| cd04619 | 114 | CBS_pair_6 The CBS domain, named after human CBS, | 99.5 | |
| COG3620 | 187 | Predicted transcriptional regulator with C-termina | 99.49 | |
| cd04642 | 126 | CBS_pair_29 The CBS domain, named after human CBS, | 99.49 | |
| COG2905 | 610 | Predicted signal-transduction protein containing c | 99.47 | |
| PRK10892 | 326 | D-arabinose 5-phosphate isomerase; Provisional | 99.47 | |
| PRK11543 | 321 | gutQ D-arabinose 5-phosphate isomerase; Provisiona | 99.46 | |
| cd04617 | 118 | CBS_pair_4 The CBS domain, named after human CBS, | 99.45 | |
| cd04630 | 114 | CBS_pair_17 The CBS domain, named after human CBS, | 99.44 | |
| cd04600 | 124 | CBS_pair_HPP_assoc This cd contains two tandem rep | 99.44 | |
| COG3448 | 382 | CBS-domain-containing membrane protein [Signal tra | 99.44 | |
| cd04608 | 124 | CBS_pair_PALP_assoc This cd contains two tandem re | 99.43 | |
| cd04627 | 123 | CBS_pair_14 The CBS domain, named after human CBS, | 99.41 | |
| cd04631 | 125 | CBS_pair_18 The CBS domain, named after human CBS, | 99.41 | |
| cd04596 | 108 | CBS_pair_DRTGG_assoc This cd contains two tandem r | 99.4 | |
| PRK07807 | 479 | inosine 5-monophosphate dehydrogenase; Validated | 99.4 | |
| cd04605 | 110 | CBS_pair_MET2_assoc This cd contains two tandem re | 99.39 | |
| cd04618 | 98 | CBS_pair_5 The CBS domain, named after human CBS, | 99.39 | |
| cd04632 | 128 | CBS_pair_19 The CBS domain, named after human CBS, | 99.39 | |
| cd04593 | 115 | CBS_pair_EriC_assoc_bac_arch This cd contains two | 99.38 | |
| COG3620 | 187 | Predicted transcriptional regulator with C-termina | 99.38 | |
| cd04590 | 111 | CBS_pair_CorC_HlyC_assoc This cd contains two tand | 99.38 | |
| cd04582 | 106 | CBS_pair_ABC_OpuCA_assoc This cd contains two tand | 99.38 | |
| cd04621 | 135 | CBS_pair_8 The CBS domain, named after human CBS, | 99.38 | |
| cd04803 | 122 | CBS_pair_15 The CBS domain, named after human CBS, | 99.37 | |
| cd04623 | 113 | CBS_pair_10 The CBS domain, named after human CBS, | 99.37 | |
| cd04607 | 113 | CBS_pair_NTP_transferase_assoc This cd contains tw | 99.36 | |
| cd04639 | 111 | CBS_pair_26 The CBS domain, named after human CBS, | 99.36 | |
| cd04801 | 114 | CBS_pair_M50_like This cd contains two tandem repe | 99.36 | |
| cd04643 | 116 | CBS_pair_30 The CBS domain, named after human CBS, | 99.36 | |
| cd04626 | 111 | CBS_pair_13 The CBS domain, named after human CBS, | 99.35 | |
| cd04583 | 109 | CBS_pair_ABC_OpuCA_assoc2 This cd contains two tan | 99.35 | |
| cd04635 | 122 | CBS_pair_22 The CBS domain, named after human CBS, | 99.34 | |
| cd04641 | 120 | CBS_pair_28 The CBS domain, named after human CBS, | 99.34 | |
| cd04586 | 135 | CBS_pair_BON_assoc This cd contains two tandem rep | 99.34 | |
| PRK01862 | 574 | putative voltage-gated ClC-type chloride channel C | 99.33 | |
| cd04615 | 113 | CBS_pair_2 The CBS domain, named after human CBS, | 99.33 | |
| cd04604 | 114 | CBS_pair_KpsF_GutQ_assoc This cd contains two tand | 99.33 | |
| cd04640 | 126 | CBS_pair_27 The CBS domain, named after human CBS, | 99.33 | |
| cd04629 | 114 | CBS_pair_16 The CBS domain, named after human CBS, | 99.33 | |
| cd04624 | 112 | CBS_pair_11 The CBS domain, named after human CBS, | 99.32 | |
| cd04601 | 110 | CBS_pair_IMPDH This cd contains two tandem repeats | 99.32 | |
| cd04620 | 115 | CBS_pair_7 The CBS domain, named after human CBS, | 99.32 | |
| cd04627 | 123 | CBS_pair_14 The CBS domain, named after human CBS, | 99.32 | |
| cd04588 | 110 | CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains | 99.31 | |
| cd04585 | 122 | CBS_pair_ACT_assoc2 This cd contains two tandem re | 99.31 | |
| cd04606 | 109 | CBS_pair_Mg_transporter This cd contains two tande | 99.31 | |
| cd04587 | 113 | CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains | 99.3 | |
| cd04613 | 114 | CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two | 99.3 | |
| PRK15094 | 292 | magnesium/cobalt efflux protein CorC; Provisional | 99.3 | |
| COG0517 | 117 | FOG: CBS domain [General function prediction only] | 99.3 | |
| cd04612 | 111 | CBS_pair_SpoIVFB_EriC_assoc This cd contains two t | 99.3 | |
| cd04800 | 111 | CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains | 99.29 | |
| PRK07107 | 502 | inosine 5-monophosphate dehydrogenase; Validated | 99.29 | |
| cd04610 | 107 | CBS_pair_ParBc_assoc This cd contains two tandem r | 99.29 | |
| cd04636 | 132 | CBS_pair_23 The CBS domain, named after human CBS, | 99.29 | |
| PLN02274 | 505 | inosine-5'-monophosphate dehydrogenase | 99.29 | |
| TIGR00400 | 449 | mgtE Mg2+ transporter (mgtE). This family of proka | 99.29 | |
| cd04595 | 110 | CBS_pair_DHH_polyA_Pol_assoc This cd contains two | 99.28 | |
| cd04602 | 114 | CBS_pair_IMPDH_2 This cd contains two tandem repea | 99.28 | |
| cd04637 | 122 | CBS_pair_24 The CBS domain, named after human CBS, | 99.27 | |
| cd04611 | 111 | CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two | 99.27 | |
| cd04622 | 113 | CBS_pair_9 The CBS domain, named after human CBS, | 99.27 | |
| cd04633 | 121 | CBS_pair_20 The CBS domain, named after human CBS, | 99.27 | |
| TIGR01303 | 475 | IMP_DH_rel_1 IMP dehydrogenase family protein. Thi | 99.26 | |
| TIGR01302 | 450 | IMP_dehydrog inosine-5'-monophosphate dehydrogenas | 99.26 | |
| PRK10892 | 326 | D-arabinose 5-phosphate isomerase; Provisional | 99.26 | |
| cd04599 | 105 | CBS_pair_GGDEF_assoc2 This cd contains two tandem | 99.25 | |
| cd04603 | 111 | CBS_pair_KefB_assoc This cd contains two tandem re | 99.25 | |
| cd04608 | 124 | CBS_pair_PALP_assoc This cd contains two tandem re | 99.25 | |
| TIGR03520 | 408 | GldE gliding motility-associated protein GldE. Mem | 99.24 | |
| cd04802 | 112 | CBS_pair_3 The CBS domain, named after human CBS, | 99.24 | |
| PRK14869 | 546 | putative manganese-dependent inorganic pyrophospha | 99.24 | |
| cd04625 | 112 | CBS_pair_12 The CBS domain, named after human CBS, | 99.24 | |
| PRK05567 | 486 | inosine 5'-monophosphate dehydrogenase; Reviewed | 99.23 | |
| cd04594 | 104 | CBS_pair_EriC_assoc_archaea This cd contains two t | 99.23 | |
| TIGR03520 | 408 | GldE gliding motility-associated protein GldE. Mem | 99.21 | |
| cd04589 | 111 | CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains | 99.21 | |
| cd04617 | 118 | CBS_pair_4 The CBS domain, named after human CBS, | 99.2 | |
| cd04609 | 110 | CBS_pair_PALP_assoc2 This cd contains two tandem r | 99.2 | |
| cd04630 | 114 | CBS_pair_17 The CBS domain, named after human CBS, | 99.2 | |
| cd04619 | 114 | CBS_pair_6 The CBS domain, named after human CBS, | 99.2 | |
| PRK11543 | 321 | gutQ D-arabinose 5-phosphate isomerase; Provisiona | 99.19 | |
| PTZ00314 | 495 | inosine-5'-monophosphate dehydrogenase; Provisiona | 99.18 | |
| cd02205 | 113 | CBS_pair The CBS domain, named after human CBS, is | 99.18 | |
| cd04642 | 126 | CBS_pair_29 The CBS domain, named after human CBS, | 99.18 | |
| cd04634 | 143 | CBS_pair_21 The CBS domain, named after human CBS, | 99.18 | |
| PRK07807 | 479 | inosine 5-monophosphate dehydrogenase; Validated | 99.18 | |
| cd04632 | 128 | CBS_pair_19 The CBS domain, named after human CBS, | 99.17 | |
| PRK15094 | 292 | magnesium/cobalt efflux protein CorC; Provisional | 99.16 | |
| TIGR00393 | 268 | kpsF KpsF/GutQ family protein. This model describe | 99.16 | |
| cd04591 | 105 | CBS_pair_EriC_assoc_euk_bac This cd contains two t | 99.16 | |
| cd04643 | 116 | CBS_pair_30 The CBS domain, named after human CBS, | 99.15 | |
| cd04623 | 113 | CBS_pair_10 The CBS domain, named after human CBS, | 99.15 | |
| cd04636 | 132 | CBS_pair_23 The CBS domain, named after human CBS, | 99.15 | |
| cd04593 | 115 | CBS_pair_EriC_assoc_bac_arch This cd contains two | 99.14 | |
| cd04584 | 121 | CBS_pair_ACT_assoc This cd contains two tandem rep | 99.14 | |
| cd04600 | 124 | CBS_pair_HPP_assoc This cd contains two tandem rep | 99.13 | |
| PF00571 | 57 | CBS: CBS domain CBS domain web page. Mutations in | 99.13 | |
| cd04801 | 114 | CBS_pair_M50_like This cd contains two tandem repe | 99.13 | |
| KOG1764 | 381 | consensus 5'-AMP-activated protein kinase, gamma s | 99.13 | |
| COG4109 | 432 | Predicted transcriptional regulator containing CBS | 99.12 | |
| cd04631 | 125 | CBS_pair_18 The CBS domain, named after human CBS, | 99.12 | |
| TIGR00400 | 449 | mgtE Mg2+ transporter (mgtE). This family of proka | 99.12 | |
| cd04598 | 119 | CBS_pair_GGDEF_assoc This cd contains two tandem r | 99.12 | |
| cd04607 | 113 | CBS_pair_NTP_transferase_assoc This cd contains tw | 99.12 | |
| COG2905 | 610 | Predicted signal-transduction protein containing c | 99.11 | |
| cd04614 | 96 | CBS_pair_1 The CBS domain, named after human CBS, | 99.11 | |
| PRK01862 | 574 | putative voltage-gated ClC-type chloride channel C | 99.11 | |
| cd04638 | 106 | CBS_pair_25 The CBS domain, named after human CBS, | 99.1 | |
| cd04629 | 114 | CBS_pair_16 The CBS domain, named after human CBS, | 99.1 | |
| cd04589 | 111 | CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains | 99.09 | |
| cd04639 | 111 | CBS_pair_26 The CBS domain, named after human CBS, | 99.09 | |
| COG0517 | 117 | FOG: CBS domain [General function prediction only] | 99.07 | |
| cd04613 | 114 | CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two | 99.07 | |
| TIGR01137 | 454 | cysta_beta cystathionine beta-synthase. Members of | 99.07 | |
| cd04621 | 135 | CBS_pair_8 The CBS domain, named after human CBS, | 99.07 | |
| cd04590 | 111 | CBS_pair_CorC_HlyC_assoc This cd contains two tand | 99.06 | |
| TIGR01303 | 475 | IMP_DH_rel_1 IMP dehydrogenase family protein. Thi | 99.06 | |
| cd04588 | 110 | CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains | 99.06 | |
| PRK05567 | 486 | inosine 5'-monophosphate dehydrogenase; Reviewed | 99.06 | |
| cd04624 | 112 | CBS_pair_11 The CBS domain, named after human CBS, | 99.06 | |
| cd04615 | 113 | CBS_pair_2 The CBS domain, named after human CBS, | 99.06 | |
| cd04803 | 122 | CBS_pair_15 The CBS domain, named after human CBS, | 99.05 | |
| cd04587 | 113 | CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains | 99.05 | |
| cd04800 | 111 | CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains | 99.05 | |
| cd04626 | 111 | CBS_pair_13 The CBS domain, named after human CBS, | 99.04 | |
| cd04586 | 135 | CBS_pair_BON_assoc This cd contains two tandem rep | 99.04 | |
| cd04605 | 110 | CBS_pair_MET2_assoc This cd contains two tandem re | 99.04 | |
| cd04609 | 110 | CBS_pair_PALP_assoc2 This cd contains two tandem r | 99.04 | |
| cd04582 | 106 | CBS_pair_ABC_OpuCA_assoc This cd contains two tand | 99.03 | |
| cd04625 | 112 | CBS_pair_12 The CBS domain, named after human CBS, | 99.03 | |
| cd04611 | 111 | CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two | 99.03 | |
| cd04620 | 115 | CBS_pair_7 The CBS domain, named after human CBS, | 99.02 | |
| cd04583 | 109 | CBS_pair_ABC_OpuCA_assoc2 This cd contains two tan | 99.02 | |
| cd04585 | 122 | CBS_pair_ACT_assoc2 This cd contains two tandem re | 99.01 | |
| cd04595 | 110 | CBS_pair_DHH_polyA_Pol_assoc This cd contains two | 99.01 | |
| cd04633 | 121 | CBS_pair_20 The CBS domain, named after human CBS, | 99.01 | |
| TIGR01137 | 454 | cysta_beta cystathionine beta-synthase. Members of | 99.0 | |
| cd04637 | 122 | CBS_pair_24 The CBS domain, named after human CBS, | 99.0 | |
| cd04592 | 133 | CBS_pair_EriC_assoc_euk This cd contains two tande | 98.99 | |
| cd04604 | 114 | CBS_pair_KpsF_GutQ_assoc This cd contains two tand | 98.98 | |
| cd04635 | 122 | CBS_pair_22 The CBS domain, named after human CBS, | 98.98 | |
| cd04612 | 111 | CBS_pair_SpoIVFB_EriC_assoc This cd contains two t | 98.97 | |
| cd04622 | 113 | CBS_pair_9 The CBS domain, named after human CBS, | 98.96 | |
| cd04802 | 112 | CBS_pair_3 The CBS domain, named after human CBS, | 98.96 | |
| PRK07107 | 502 | inosine 5-monophosphate dehydrogenase; Validated | 98.94 | |
| cd04640 | 126 | CBS_pair_27 The CBS domain, named after human CBS, | 98.92 | |
| cd04596 | 108 | CBS_pair_DRTGG_assoc This cd contains two tandem r | 98.92 | |
| cd04602 | 114 | CBS_pair_IMPDH_2 This cd contains two tandem repea | 98.91 | |
| cd04599 | 105 | CBS_pair_GGDEF_assoc2 This cd contains two tandem | 98.91 | |
| cd04601 | 110 | CBS_pair_IMPDH This cd contains two tandem repeats | 98.9 | |
| PLN02274 | 505 | inosine-5'-monophosphate dehydrogenase | 98.9 | |
| cd02205 | 113 | CBS_pair The CBS domain, named after human CBS, is | 98.89 | |
| cd04584 | 121 | CBS_pair_ACT_assoc This cd contains two tandem rep | 98.87 | |
| PRK11573 | 413 | hypothetical protein; Provisional | 98.87 | |
| TIGR00393 | 268 | kpsF KpsF/GutQ family protein. This model describe | 98.86 | |
| cd04592 | 133 | CBS_pair_EriC_assoc_euk This cd contains two tande | 98.85 | |
| cd04610 | 107 | CBS_pair_ParBc_assoc This cd contains two tandem r | 98.85 | |
| PF00571 | 57 | CBS: CBS domain CBS domain web page. Mutations in | 98.84 | |
| cd04606 | 109 | CBS_pair_Mg_transporter This cd contains two tande | 98.83 | |
| TIGR01302 | 450 | IMP_dehydrog inosine-5'-monophosphate dehydrogenas | 98.82 | |
| cd04634 | 143 | CBS_pair_21 The CBS domain, named after human CBS, | 98.82 | |
| cd04594 | 104 | CBS_pair_EriC_assoc_archaea This cd contains two t | 98.82 | |
| PTZ00314 | 495 | inosine-5'-monophosphate dehydrogenase; Provisiona | 98.81 | |
| cd04591 | 105 | CBS_pair_EriC_assoc_euk_bac This cd contains two t | 98.8 | |
| COG2239 | 451 | MgtE Mg/Co/Ni transporter MgtE (contains CBS domai | 98.78 | |
| PRK11573 | 413 | hypothetical protein; Provisional | 98.74 | |
| cd04598 | 119 | CBS_pair_GGDEF_assoc This cd contains two tandem r | 98.7 | |
| COG1253 | 429 | TlyC Hemolysins and related proteins containing CB | 98.65 | |
| TIGR01186 | 363 | proV glycine betaine/L-proline transport ATP bindi | 98.62 | |
| cd04638 | 106 | CBS_pair_25 The CBS domain, named after human CBS, | 98.58 | |
| COG4109 | 432 | Predicted transcriptional regulator containing CBS | 98.55 | |
| COG1253 | 429 | TlyC Hemolysins and related proteins containing CB | 98.45 | |
| PRK10070 | 400 | glycine betaine transporter ATP-binding subunit; P | 98.45 | |
| smart00116 | 49 | CBS Domain in cystathionine beta-synthase and othe | 98.29 | |
| KOG2550 | 503 | consensus IMP dehydrogenase/GMP reductase [Nucleot | 98.28 | |
| COG4536 | 423 | CorB Putative Mg2+ and Co2+ transporter CorB [Inor | 98.26 | |
| cd04597 | 113 | CBS_pair_DRTGG_assoc2 This cd contains two tandem | 98.12 | |
| KOG2550 | 503 | consensus IMP dehydrogenase/GMP reductase [Nucleot | 97.95 | |
| cd04597 | 113 | CBS_pair_DRTGG_assoc2 This cd contains two tandem | 97.91 | |
| COG2239 | 451 | MgtE Mg/Co/Ni transporter MgtE (contains CBS domai | 97.79 | |
| KOG0474 | 762 | consensus Cl- channel CLC-7 and related proteins ( | 97.69 | |
| COG4535 | 293 | CorC Putative Mg2+ and Co2+ transporter CorC [Inor | 97.59 | |
| PRK10070 | 400 | glycine betaine transporter ATP-binding subunit; P | 97.54 | |
| TIGR01186 | 363 | proV glycine betaine/L-proline transport ATP bindi | 97.53 | |
| smart00116 | 49 | CBS Domain in cystathionine beta-synthase and othe | 97.5 | |
| COG4536 | 423 | CorB Putative Mg2+ and Co2+ transporter CorB [Inor | 97.4 | |
| COG4535 | 293 | CorC Putative Mg2+ and Co2+ transporter CorC [Inor | 97.36 | |
| KOG0474 | 762 | consensus Cl- channel CLC-7 and related proteins ( | 97.26 | |
| KOG0475 | 696 | consensus Cl- channel CLC-3 and related proteins ( | 96.61 | |
| KOG0475 | 696 | consensus Cl- channel CLC-3 and related proteins ( | 95.93 | |
| COG4175 | 386 | ProV ABC-type proline/glycine betaine transport sy | 94.98 | |
| TIGR03415 | 382 | ABC_choXWV_ATP choline ABC transporter, ATP-bindin | 94.97 | |
| COG1125 | 309 | OpuBA ABC-type proline/glycine betaine transport s | 88.9 | |
| TIGR03415 | 382 | ABC_choXWV_ATP choline ABC transporter, ATP-bindin | 87.38 | |
| COG4175 | 386 | ProV ABC-type proline/glycine betaine transport sy | 83.33 |
| >KOG1764 consensus 5'-AMP-activated protein kinase, gamma subunit [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=99.98 E-value=5.4e-31 Score=263.68 Aligned_cols=287 Identities=25% Similarity=0.382 Sum_probs=224.1
Q ss_pred cccccchhhhhhcCCCCeEEEeCChhHHHHHHHHhhCCCceEEEEccCCCCCCCCCCCCCCCeEEEEEehhHHHHHHhhc
Q 016003 3 VSLLADEVSDLCLGKPALRALSISAAIADALSALKNSDESFISVWDCNCCSNHRKLGDACECQCVGKVCMVDVICYLCKD 82 (397)
Q Consensus 3 ~~~~~~~v~dl~~~k~~li~v~~~~tv~~Al~~L~~~~I~s~PV~d~~~~~~~~~~~~~~~~~~vGiv~~~Dil~~l~~~ 82 (397)
-|+..+++.+++...-+++.++..+++.+|+.+|..++..++||||.. +++++|++++.|++.++...
T Consensus 61 ~~~~~~~~~~~~p~~~~l~~~d~~~~v~~a~~~l~~~~~~~~p~~~~~------------~~~~~g~~~~~d~i~~~~~~ 128 (381)
T KOG1764|consen 61 KFMKSHTCYDLLPTSSKLVVFDTKLSVKKAFNALVQNGVRAAPLWDSK------------KQQFVGMLTITDFITVLLRY 128 (381)
T ss_pred HHHhccCcccccCCcceeEEeeCCCcHHHHHHHHHhhceeeeccccCc------------cceeEEEEEHHHHHHHHHHh
Confidence 477889999999888899999999999999999999999999999986 47999999999999988642
Q ss_pred CCC-CChhhh---------hcCChhhhccCCCCCceEEeCCCCCHHHHHHHHh-cCCceEEEeccCcchhhhhhhccccc
Q 016003 83 SNS-LSPSLA---------LKQPVSVLLPQLLPPLVMHVEPSCSLLEAMDLML-GGAQNLVVPIKNRLSIKRKQQQKLSS 151 (397)
Q Consensus 83 ~~l-~~~~~~---------~~~~V~~lm~~~~~~~~~~V~~~~sL~~al~~m~-~g~~r~~V~~~~~~~~~~~~~~~~~~ 151 (397)
... .+.... -..++..+.......++..+.|..++.+++..+. .++||++|.+..
T Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~s~l~~~~~l~~~~~~rvpv~d~~-------------- 194 (381)
T KOG1764|consen 129 YKSKSSLDNIEVLEDSQLSKRREVECLLKETLKPPFVSISPESSLLDAVLLLIKSRIHRVPVIDPE-------------- 194 (381)
T ss_pred hccCCcHHHHhhhhhhhccccchhhhhhccccCCCceeecCcHHHHHHHHHHHhCCccceeeeccc--------------
Confidence 110 011111 1234545554443445699999999999999888 799999987621
Q ss_pred ccccCCCCceeeeecHHHHHHHHHhccCCC--CCCccCCccccCCCCcC-eEEEeCCCcHHHHHHHHHhcCCCCCEEEEE
Q 016003 152 SSLTNHNGREFCWLTQEDIIRFILSSISLF--SPIPALSIDSLGIISTD-VVAVDYHSPASLALEAISRSLFDQTSVAVV 228 (397)
Q Consensus 152 ~~~~~~~~~~~~IITq~DIi~~l~~~~~~l--~~l~~~ti~~L~~~~~~-v~tv~~~~~~~~a~~~m~~~~i~~s~vpVV 228 (397)
.+.+.+++||..|++|++.+.+.+ ..+..+++.+|++.+-. +..+..++++.+|+++|...++ +++|||
T Consensus 195 ------~~~v~~ilt~~rIl~~l~~~~~~~~~~~~l~~s~~dl~ig~~~~i~~i~~~~~v~~al~~m~~~~i--s~lpvV 266 (381)
T KOG1764|consen 195 ------TGEVLYILTQRRILKFLWLNGRLLPLPSLLSKSLSDLGIGTWSNIASISEDTPVIEALKIMSERRI--SALPVV 266 (381)
T ss_pred ------ccceeeehhHHHHHHHHHHhhcccccHHHhhCCHHHhCcchhhhheeecCCCcHHHHHHHHHhcCc--CcceEE
Confidence 136788999999999999987776 47889999999998854 9999999999999999999999 999999
Q ss_pred cCCCcEEEeeccCcccCcchhHHHHHhhcChhhhhhhhccCCCCchhHHH-HHHHhhhcchhhhhhhhccccCCCCCCCC
Q 016003 229 DSDGFLIGEISPSTLGCCDETVAAAITTLSAGDLMAYIDCGGPPEDLVRV-VKERLKDKGLEGMLEHFDMSSSLMPYLST 307 (397)
Q Consensus 229 d~~g~lvG~is~~dl~~~~~~~~~~~~~ls~~Dl~~~~~~~~~~~~l~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 307 (397)
|..|+++|++|..|..+ ..... .+..+... +++++
T Consensus 267 ~~~g~~v~~~s~~Dv~~-------------------l~~~~-~~~~~~~~~l~~~~------------------------ 302 (381)
T KOG1764|consen 267 DENGKKVGNYSRFDVIH-------------------LAREG-TYNNLDLSCLSEAL------------------------ 302 (381)
T ss_pred cCCCceecceehhhhhh-------------------hhhcC-ccCccchhHHHHHh------------------------
Confidence 99998899966555544 22110 01111000 00000
Q ss_pred CCCCCccchhhhccccCCCccccccchhhhhcCCccEEeCCCCcHHHHHHHHHHcCCcEEEEEcCCCcEEEEEehHHHHH
Q 016003 308 SSSSDEESTATSKLTRSGKHSRSMSYSARMVRRAEAIVCHPTSSLMAVMIQAIAHRVTYVWVIEDDCTLTGIVTFSDLLK 387 (397)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~~~~sl~~v~~~m~~~~i~rl~VVd~~~~lvGvVt~~DIl~ 387 (397)
..+. ....+++||++++||++++++|+.+++||+||||++|+++||||++||+.
T Consensus 303 -------------~~~~-------------~~~~~vvtc~~~ssL~~vi~~lv~~~vHRl~VVd~~~~l~GvvSLsDil~ 356 (381)
T KOG1764|consen 303 -------------SHRP-------------IRFEGVVTCRPTSTLAEVIDKLVAHRVHRLWVVDEDGVLVGVISLSDILS 356 (381)
T ss_pred -------------hhcc-------------cccCccEEEeecchHHHHHHHHHhcCceEEEEEcCCCcEEEEeeHHHHHH
Confidence 0011 12346999999999999999999999999999999999999999999999
Q ss_pred HHHHHH
Q 016003 388 VFRKHL 393 (397)
Q Consensus 388 ~l~~~~ 393 (397)
++....
T Consensus 357 ~l~~~p 362 (381)
T KOG1764|consen 357 YLVLTP 362 (381)
T ss_pred HHHhCc
Confidence 998764
|
|
| >COG3448 CBS-domain-containing membrane protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.73 E-value=2.1e-17 Score=155.44 Aligned_cols=208 Identities=15% Similarity=0.203 Sum_probs=147.9
Q ss_pred CceEEeCCCCCHHHHHHHHhcCCceEEEeccCcch--h-hhhhhccccccccc--------CCCCceeeeecHHHHHHHH
Q 016003 106 PLVMHVEPSCSLLEAMDLMLGGAQNLVVPIKNRLS--I-KRKQQQKLSSSSLT--------NHNGREFCWLTQEDIIRFI 174 (397)
Q Consensus 106 ~~~~~V~~~~sL~~al~~m~~g~~r~~V~~~~~~~--~-~~~~~~~~~~~~~~--------~~~~~~~~IITq~DIi~~l 174 (397)
.++|++-.++-++-.+.+++++.-|..+|..-... + .+..++.|++...+ ...-..+--|++.|+-+.|
T Consensus 151 F~l~Pval~SliLv~~a~lynnl~~r~YPh~~~~p~an~HgT~Dppp~~rvgfs~~Dld~aL~~~~E~lDIdrddLe~ll 230 (382)
T COG3448 151 FVLWPVALNSLILVGLALLYNNLTRRTYPHHWLSPPANLHGTADPPPSQRVGFSSEDLDAALQRLGETLDIDRDDLERLL 230 (382)
T ss_pred ceehhhhhhhHHHHHHHHHHHHHhcCCCCCccCCCcccccCCCCCCchhccCCCHHHHHHHHHhcCceecCCHHHHHHHH
Confidence 46888999999998898888778787788632211 1 11123333321111 1222445578888888887
Q ss_pred Hhc-----cCCCCCCccCCccccCCCCcCeEEEeCCCcHHHHHHHHHhcCCCCCEEEEEcCCCcEEEeeccCcccCcchh
Q 016003 175 LSS-----ISLFSPIPALSIDSLGIISTDVVAVDYHSPASLALEAISRSLFDQTSVAVVDSDGFLIGEISPSTLGCCDET 249 (397)
Q Consensus 175 ~~~-----~~~l~~l~~~ti~~L~~~~~~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~is~~dl~~~~~~ 249 (397)
.+. .+..+.+.+. +||+++|+|+.+++++.+|.++|.+|++ .++||+|++.+++|+++.
T Consensus 231 r~~elqa~~R~~~~Ltca-----dIMSrdVvtv~~~ts~dhA~~ll~~H~i--kaLPV~d~~~rl~GiVt~--------- 294 (382)
T COG3448 231 RETELQALRRRMGELTCA-----DIMSRDVVTVSTDTSIDHARKLLQEHRI--KALPVLDEHRRLVGIVTQ--------- 294 (382)
T ss_pred HHHHHHHHHHHhccccHH-----HhcCccceecCCcCChHHHHHHHHHcCc--ccccccccccceeeeeeH---------
Confidence 653 1223333333 4899999999999999999999999999 999999999999999664
Q ss_pred HHHHHhhcChhhhhhhhccCCCCchhHHHHHHHhhhcchhhhhhhhccccCCCCCCCCCCCCCccchhhhccccCCCccc
Q 016003 250 VAAAITTLSAGDLMAYIDCGGPPEDLVRVVKERLKDKGLEGMLEHFDMSSSLMPYLSTSSSSDEESTATSKLTRSGKHSR 329 (397)
Q Consensus 250 ~~~~~~~ls~~Dl~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (397)
+||.+.... +| ...++ +. +..+
T Consensus 295 ----------~dl~~~a~~-~p----------------~qrlr--~~--------------------------~~~~--- 316 (382)
T COG3448 295 ----------RDLLKHARP-SP----------------FQRLR--FL--------------------------RPPT--- 316 (382)
T ss_pred ----------HHHhhccCc-ch----------------HHHhh--cc--------------------------CCCc---
Confidence 444431110 00 11110 00 0111
Q ss_pred cccchhhhhcCCccEEeCCCCcHHHHHHHHHHcCCcEEEEEcCCCcEEEEEehHHHHHHHHHH
Q 016003 330 SMSYSARMVRRAEAIVCHPTSSLMAVMIQAIAHRVTYVWVIEDDCTLTGIVTFSDLLKVFRKH 392 (397)
Q Consensus 330 ~~~~~~~~~~~~~~it~~~~~sl~~v~~~m~~~~i~rl~VVd~~~~lvGvVt~~DIl~~l~~~ 392 (397)
.+.+|+.++.|+.|+++..+.+-.+.+.+.|.+||+|++|+++||||.+|++.+++..
T Consensus 317 -----vk~imt~~v~tv~pdtpa~~lvp~lad~g~H~lpvld~~g~lvGIvsQtDliaal~r~ 374 (382)
T COG3448 317 -----VKGIMTTPVVTVRPDTPAVELVPRLADEGLHALPVLDAAGKLVGIVSQTDLIAALYRN 374 (382)
T ss_pred -----ccccccCcceeecCCCcHHHHHHHhhcCCcceeeEEcCCCcEEEEeeHHHHHHHHHHH
Confidence 1246899999999999999999999999999999999999999999999999999875
|
|
| >COG2524 Predicted transcriptional regulator, contains C-terminal CBS domains [Transcription] | Back alignment and domain information |
|---|
Probab=99.70 E-value=9e-17 Score=148.82 Aligned_cols=127 Identities=18% Similarity=0.265 Sum_probs=106.6
Q ss_pred CCCCccCCccccCCCCcCeEEEeCCCcHHHHHHHHHhcCCCCCEEEEEcCCCcEEEeeccCcccCcchhHHHHHhhcChh
Q 016003 181 FSPIPALSIDSLGIISTDVVAVDYHSPASLALEAISRSLFDQTSVAVVDSDGFLIGEISPSTLGCCDETVAAAITTLSAG 260 (397)
Q Consensus 181 l~~l~~~ti~~L~~~~~~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~is~~dl~~~~~~~~~~~~~ls~~ 260 (397)
...++..++.+ +|+++++++.+++++.+|.+.+.++++ .+.||+|++ +++|+ ++.+
T Consensus 166 m~siPk~~V~~--~~s~~~i~v~~d~tl~eaak~f~~~~i--~GaPVvd~d-k~vGi-------------------it~~ 221 (294)
T COG2524 166 MVSIPKEKVKN--LMSKKLITVRPDDTLREAAKLFYEKGI--RGAPVVDDD-KIVGI-------------------ITLS 221 (294)
T ss_pred eeecCcchhhh--hccCCceEecCCccHHHHHHHHHHcCc--cCCceecCC-ceEEE-------------------EEHH
Confidence 34567778877 799999999999999999999999999 999999976 99999 5567
Q ss_pred hhhhhhccCCCCchhHHHHHHHhhhcchhhhhhhhccccCCCCCCCCCCCCCccchhhhccccCCCccccccchhhhhcC
Q 016003 261 DLMAYIDCGGPPEDLVRVVKERLKDKGLEGMLEHFDMSSSLMPYLSTSSSSDEESTATSKLTRSGKHSRSMSYSARMVRR 340 (397)
Q Consensus 261 Dl~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (397)
|+...+..+ .+ ..+ ..++|.
T Consensus 222 dI~~aia~g--------------------~~--------------------------------~~k--------V~~~M~ 241 (294)
T COG2524 222 DIAKAIANG--------------------NL--------------------------------DAK--------VSDYMR 241 (294)
T ss_pred HHHHHHHcC--------------------Cc--------------------------------ccc--------HHHHhc
Confidence 776533210 00 001 124689
Q ss_pred CccEEeCCCCcHHHHHHHHHHcCCcEEEEEcCCCcEEEEEehHHHHHHHHH
Q 016003 341 AEAIVCHPTSSLMAVMIQAIAHRVTYVWVIEDDCTLTGIVTFSDLLKVFRK 391 (397)
Q Consensus 341 ~~~it~~~~~sl~~v~~~m~~~~i~rl~VVd~~~~lvGvVt~~DIl~~l~~ 391 (397)
++++|++.|.++.+|+++|..+++.||-|+|++|+++|+||++|||+.++.
T Consensus 242 k~vitI~eDe~i~dAir~M~~~nVGRLlV~ds~gkpvGiITrTDIL~~ia~ 292 (294)
T COG2524 242 KNVITINEDEDIYDAIRLMNKNNVGRLLVTDSNGKPVGIITRTDILTRIAG 292 (294)
T ss_pred cCCceEcCchhHHHHHHHHHhcCcceEEEEccCCcEEEEEehHHHHHHhhc
Confidence 999999999999999999999999999999999999999999999998864
|
|
| >COG2524 Predicted transcriptional regulator, contains C-terminal CBS domains [Transcription] | Back alignment and domain information |
|---|
Probab=99.66 E-value=6.1e-16 Score=143.34 Aligned_cols=121 Identities=20% Similarity=0.244 Sum_probs=108.6
Q ss_pred ccchhhhhhcCCCCeEEEeCChhHHHHHHHHhhCCCceEEEEccCCCCCCCCCCCCCCCeEEEEEehhHHHHHHhhcCCC
Q 016003 6 LADEVSDLCLGKPALRALSISAAIADALSALKNSDESFISVWDCNCCSNHRKLGDACECQCVGKVCMVDVICYLCKDSNS 85 (397)
Q Consensus 6 ~~~~v~dl~~~k~~li~v~~~~tv~~Al~~L~~~~I~s~PV~d~~~~~~~~~~~~~~~~~~vGiv~~~Dil~~l~~~~~l 85 (397)
-..+|.++| +++++++++++|+.+|.+.+++++|.++||.|. ++++||++..||...+++.
T Consensus 170 Pk~~V~~~~--s~~~i~v~~d~tl~eaak~f~~~~i~GaPVvd~--------------dk~vGiit~~dI~~aia~g--- 230 (294)
T COG2524 170 PKEKVKNLM--SKKLITVRPDDTLREAAKLFYEKGIRGAPVVDD--------------DKIVGIITLSDIAKAIANG--- 230 (294)
T ss_pred Ccchhhhhc--cCCceEecCCccHHHHHHHHHHcCccCCceecC--------------CceEEEEEHHHHHHHHHcC---
Confidence 356789999 688999999999999999999999999999995 5899999999999998863
Q ss_pred CChhhhhcCChhhhccCCCCCceEEeCCCCCHHHHHHHHh-cCCceEEEeccCcchhhhhhhcccccccccCCCCceeee
Q 016003 86 LSPSLALKQPVSVLLPQLLPPLVMHVEPSCSLLEAMDLML-GGAQNLVVPIKNRLSIKRKQQQKLSSSSLTNHNGREFCW 164 (397)
Q Consensus 86 ~~~~~~~~~~V~~lm~~~~~~~~~~V~~~~sL~~al~~m~-~g~~r~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I 164 (397)
.++.+|+++|.++ +++++.++.|.||+++|. ++++|++|.+++ ++.+||
T Consensus 231 -----~~~~kV~~~M~k~----vitI~eDe~i~dAir~M~~~nVGRLlV~ds~---------------------gkpvGi 280 (294)
T COG2524 231 -----NLDAKVSDYMRKN----VITINEDEDIYDAIRLMNKNNVGRLLVTDSN---------------------GKPVGI 280 (294)
T ss_pred -----CccccHHHHhccC----CceEcCchhHHHHHHHHHhcCcceEEEEccC---------------------CcEEEE
Confidence 3467899999877 999999999999999999 899999998643 577899
Q ss_pred ecHHHHHHHHH
Q 016003 165 LTQEDIIRFIL 175 (397)
Q Consensus 165 ITq~DIi~~l~ 175 (397)
||.+||++.++
T Consensus 281 ITrTDIL~~ia 291 (294)
T COG2524 281 ITRTDILTRIA 291 (294)
T ss_pred EehHHHHHHhh
Confidence 99999999875
|
|
| >cd04618 CBS_pair_5 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=99.61 E-value=6.8e-15 Score=119.84 Aligned_cols=94 Identities=23% Similarity=0.309 Sum_probs=82.6
Q ss_pred CeEEEeCCCcHHHHHHHHHhcCCCCCEEEEEcCC-CcEEEeeccCcccCcchhHHHHHhhcChhhhhhhhccCCCCchhH
Q 016003 198 DVVAVDYHSPASLALEAISRSLFDQTSVAVVDSD-GFLIGEISPSTLGCCDETVAAAITTLSAGDLMAYIDCGGPPEDLV 276 (397)
Q Consensus 198 ~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~-g~lvG~is~~dl~~~~~~~~~~~~~ls~~Dl~~~~~~~~~~~~l~ 276 (397)
.++++.+++++.+|++.|.++++ +++||+|++ |+++|+| |.+|+...
T Consensus 2 ~~~~v~~~~~l~~a~~~~~~~~~--~~~~Vvd~~~~~~~Giv-------------------t~~Dl~~~----------- 49 (98)
T cd04618 2 KLVVFDTKLPVKKAFNALVENGI--RSAPLWDSRKQQFVGML-------------------TITDFILI----------- 49 (98)
T ss_pred eEEEECCCCcHHHHHHHHHHcCC--ceEEEEeCCCCEEEEEE-------------------EHHHHhhh-----------
Confidence 47899999999999999999999 999999975 8999994 45555420
Q ss_pred HHHHHHhhhcchhhhhhhhccccCCCCCCCCCCCCCccchhhhccccCCCccccccchhhhhcCCccEEeCCCCcHHHHH
Q 016003 277 RVVKERLKDKGLEGMLEHFDMSSSLMPYLSTSSSSDEESTATSKLTRSGKHSRSMSYSARMVRRAEAIVCHPTSSLMAVM 356 (397)
Q Consensus 277 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~~~~sl~~v~ 356 (397)
+. +++|+|++++.+++
T Consensus 50 --------------------------------------------------------------~~--~~~v~~~~~l~~a~ 65 (98)
T cd04618 50 --------------------------------------------------------------LR--LVSIHPERSLFDAA 65 (98)
T ss_pred --------------------------------------------------------------ee--eEEeCCCCcHHHHH
Confidence 01 68999999999999
Q ss_pred HHHHHcCCcEEEEEcCC-CcEEEEEehHHHHH
Q 016003 357 IQAIAHRVTYVWVIEDD-CTLTGIVTFSDLLK 387 (397)
Q Consensus 357 ~~m~~~~i~rl~VVd~~-~~lvGvVt~~DIl~ 387 (397)
++|.+++++++||+|++ |+++|+||.+||++
T Consensus 66 ~~m~~~~~~~lpVvd~~~~~~~giit~~d~~~ 97 (98)
T cd04618 66 LLLLKNKIHRLPVIDPSTGTGLYILTSRRILK 97 (98)
T ss_pred HHHHHCCCCEeeEEECCCCCceEEeehhhhhc
Confidence 99999999999999987 89999999999986
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera |
| >cd04641 CBS_pair_28 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=99.58 E-value=3e-14 Score=119.18 Aligned_cols=120 Identities=17% Similarity=0.280 Sum_probs=90.0
Q ss_pred cCeEEEeCCCcHHHHHHHHHhcCCCCCEEEEEcCCCcEEEeeccCcccCcchhHHHHHhhcChhhhhhhhccCCCCchhH
Q 016003 197 TDVVAVDYHSPASLALEAISRSLFDQTSVAVVDSDGFLIGEISPSTLGCCDETVAAAITTLSAGDLMAYIDCGGPPEDLV 276 (397)
Q Consensus 197 ~~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~is~~dl~~~~~~~~~~~~~ls~~Dl~~~~~~~~~~~~l~ 276 (397)
++++++++++++.+|++.|.++++ +++||+|++|+++|+ ++.+|++.+...+.+. .
T Consensus 1 ~~~~~i~~~~~l~~a~~~~~~~~~--~~~pVv~~~~~~~Gi-------------------v~~~dl~~~~~~~~~~-~-- 56 (120)
T cd04641 1 KNIATARPDTPLIDVLDMLVERRV--SALPIVDENGKVVDV-------------------YSRFDVINLAKEGAYN-N-- 56 (120)
T ss_pred CCcEEEcCCCCHHHHHHHHHHcCC--CeeeEECCCCeEEEE-------------------EeHHHHHHHHhcCccc-c--
Confidence 467899999999999999999999 999999999999999 5566666532110000 0
Q ss_pred HHHHHHhhhcchhhhhhhhccccCCCCCCCCCCCCCccchhhhccccCCCccccccchhhhhcCCccEEeCCCCcHHHHH
Q 016003 277 RVVKERLKDKGLEGMLEHFDMSSSLMPYLSTSSSSDEESTATSKLTRSGKHSRSMSYSARMVRRAEAIVCHPTSSLMAVM 356 (397)
Q Consensus 277 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~~~~sl~~v~ 356 (397)
..... .+. . .....|..++.+|++++++.+++
T Consensus 57 ----------~~~~~-------------------------~~~-------~------~~~~~~~~~~~~v~~~~~l~~~~ 88 (120)
T cd04641 57 ----------LDLTV-------------------------GEA-------L------ERRSQDFEGVRTCSPDDCLRTIF 88 (120)
T ss_pred ----------ccCCH-------------------------HHH-------H------hhcccCCCCCeEEcCCCcHHHHH
Confidence 00000 000 0 00012456789999999999999
Q ss_pred HHHHHcCCcEEEEEcCCCcEEEEEehHHHHHH
Q 016003 357 IQAIAHRVTYVWVIEDDCTLTGIVTFSDLLKV 388 (397)
Q Consensus 357 ~~m~~~~i~rl~VVd~~~~lvGvVt~~DIl~~ 388 (397)
++|.+++++++||+|++|+++|+||+.|++++
T Consensus 89 ~~m~~~~~~~l~Vvd~~~~~~Givt~~di~~~ 120 (120)
T cd04641 89 DLIVKARVHRLVVVDENKRVEGIISLSDILQF 120 (120)
T ss_pred HHHHhcCccEEEEECCCCCEEEEEEHHHhhcC
Confidence 99999999999999998999999999999863
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener |
| >PRK14869 putative manganese-dependent inorganic pyrophosphatase; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.7e-14 Score=152.17 Aligned_cols=201 Identities=16% Similarity=0.111 Sum_probs=135.2
Q ss_pred chhhhhhcCCCCeEEEeCChhHHHHHHHHhhCCCceEEEEccCCCCCCCCCCCCCCCeEEEEEehhHHHHHHhhcCCCCC
Q 016003 8 DEVSDLCLGKPALRALSISAAIADALSALKNSDESFISVWDCNCCSNHRKLGDACECQCVGKVCMVDVICYLCKDSNSLS 87 (397)
Q Consensus 8 ~~v~dl~~~k~~li~v~~~~tv~~Al~~L~~~~I~s~PV~d~~~~~~~~~~~~~~~~~~vGiv~~~Dil~~l~~~~~l~~ 87 (397)
.+|+|+| .++++++++++++.+|+++|.++++..+||+|. +++++|+++..|+..++.+.....
T Consensus 68 ~~V~dim--~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~-------------~g~l~Givt~~di~~~~~~~~~~~- 131 (546)
T PRK14869 68 PQVRDLE--IDKPVTVSPDTSLKEAWNLMDENNVKTLPVVDE-------------EGKLLGLVSLSDLARAYMDILDPE- 131 (546)
T ss_pred CcHHHhc--CCCCcEECCCCcHHHHHHHHHHcCCCEEEEEcC-------------CCEEEEEEEHHHHHHHHHhhcchh-
Confidence 6899999 467999999999999999999999999999996 368999999999998766422100
Q ss_pred hhhhhcCChhhhc--------------------------------cCCCCCceEEeCCCCCHHHHHHHHhcCCceEEEec
Q 016003 88 PSLALKQPVSVLL--------------------------------PQLLPPLVMHVEPSCSLLEAMDLMLGGAQNLVVPI 135 (397)
Q Consensus 88 ~~~~~~~~V~~lm--------------------------------~~~~~~~~~~V~~~~sL~~al~~m~~g~~r~~V~~ 135 (397)
.-.....++.++. ..-.++.++.+.....+.. ..+..|+..+.+..
T Consensus 132 ~~~~~~~t~~~i~~~L~~~~l~~~~~~~~~~~~~~v~a~~~~~~~~~~~~~~lvi~gdr~d~~~--~ai~~~~~~lIlt~ 209 (546)
T PRK14869 132 ILSKSPTSLENIIRTLDGEVLVGAEEDKVEEGKVVVAAMAPESLLERIEEGDIVIVGDREDIQL--AAIEAGVRLLIITG 209 (546)
T ss_pred hhhhcCCCHHHHHHhcCcEEEecCcccccccccEEEEEcCHHHHHHhccCCCEEEEcCcHHHHH--HHHHcCCCEEEECC
Confidence 0001111121111 1111233444433333222 22336777776653
Q ss_pred cCcchhhhhhhcccccccccCCCCceeeeecHHHHHHHHHhccCCCCCCccCCccccCCCC-cCeEEEeCCCcHHHHHHH
Q 016003 136 KNRLSIKRKQQQKLSSSSLTNHNGREFCWLTQEDIIRFILSSISLFSPIPALSIDSLGIIS-TDVVAVDYHSPASLALEA 214 (397)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~IITq~DIi~~l~~~~~~l~~l~~~ti~~L~~~~-~~v~tv~~~~~~~~a~~~ 214 (397)
......... .......+..|.|+.|..+....-. ...++++ +|+ ++++++++++++.+|.+.
T Consensus 210 g~~~~~~v~---------~la~~~~i~ii~t~~dt~~t~~~l~------~~~~V~~--iM~~~~~~~~~~~~~~~~~~~~ 272 (546)
T PRK14869 210 GAPVSEDVL---------ELAKENGVTVISTPYDTFTTARLIN------QSIPVSY--IMTTEDLVTFSKDDYLEDVKEV 272 (546)
T ss_pred CCCCCHHHH---------HHHHhCCCeEEEecccHHHHHHHhh------cCCCHHH--hccCCCcEEECCCCcHHHHHHH
Confidence 221100000 0012235667899999887765321 1455666 799 899999999999999999
Q ss_pred HHhcCCCCCEEEEEcCCCcEEEeeccCcccC
Q 016003 215 ISRSLFDQTSVAVVDSDGFLIGEISPSTLGC 245 (397)
Q Consensus 215 m~~~~i~~s~vpVVd~~g~lvG~is~~dl~~ 245 (397)
|.++++ ..+||||++|+++|+||.+||.+
T Consensus 273 m~~~~~--~~~PVvd~~g~lvGiit~~dl~~ 301 (546)
T PRK14869 273 MLKSRY--RSYPVVDEDGKVVGVISRYHLLS 301 (546)
T ss_pred HHhcCC--CceEEEcCCCCEEEEEEHHHhhc
Confidence 999999 99999999999999977666655
|
|
| >cd04603 CBS_pair_KefB_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the KefB (Kef-type K+ transport systems) domain which is involved in inorganic ion transport and metabolism | Back alignment and domain information |
|---|
Probab=99.54 E-value=1e-13 Score=114.54 Aligned_cols=109 Identities=19% Similarity=0.205 Sum_probs=87.4
Q ss_pred CeEEEeCCCcHHHHHHHHHhcCCCCCEEEEEcCCCcEEEeeccCcccCcchhHHHHHhhcChhhhhhhhccCCCCchhHH
Q 016003 198 DVVAVDYHSPASLALEAISRSLFDQTSVAVVDSDGFLIGEISPSTLGCCDETVAAAITTLSAGDLMAYIDCGGPPEDLVR 277 (397)
Q Consensus 198 ~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~is~~dl~~~~~~~~~~~~~ls~~Dl~~~~~~~~~~~~l~~ 277 (397)
+++++.+++++.+|++.|...+. +.+||+|++|+++|+| +..|++.....
T Consensus 2 ~~~~v~~~~~l~~a~~~~~~~~~--~~~~V~d~~~~~~G~v-------------------~~~dl~~~~~~--------- 51 (111)
T cd04603 2 QTVSVNCENPLREAIKMINELGA--RAVVVVDEENKVLGQV-------------------TLSDLLEIGPN--------- 51 (111)
T ss_pred ceEEeCCCCcHHHHHHHHHHcCC--CEEEEEcCCCCEEEEE-------------------EHHHHHhhccc---------
Confidence 46789999999999999998888 9999999999999994 56665541000
Q ss_pred HHHHHhhhcchhhhhhhhccccCCCCCCCCCCCCCccchhhhccccCCCccccccchhhhhcCCccEEeCCCCcHHHHHH
Q 016003 278 VVKERLKDKGLEGMLEHFDMSSSLMPYLSTSSSSDEESTATSKLTRSGKHSRSMSYSARMVRRAEAIVCHPTSSLMAVMI 357 (397)
Q Consensus 278 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~~~~sl~~v~~ 357 (397)
.+. ... ..++|..++.++.+++++.+++.
T Consensus 52 -----------------------~~~--------------------~~~--------v~~~~~~~~~~v~~~~~l~~al~ 80 (111)
T cd04603 52 -----------------------DYE--------------------TLK--------VCEVYIVPVPIVYCDSKVTDLLR 80 (111)
T ss_pred -----------------------ccc--------------------ccC--------hhheeecCCcEECCCCcHHHHHH
Confidence 000 000 01235667899999999999999
Q ss_pred HHHHcCCcEEEEEcCCCcEEEEEehHHHHH
Q 016003 358 QAIAHRVTYVWVIEDDCTLTGIVTFSDLLK 387 (397)
Q Consensus 358 ~m~~~~i~rl~VVd~~~~lvGvVt~~DIl~ 387 (397)
+|.+++.+++||+|++|+++|+||.+||++
T Consensus 81 ~m~~~~~~~lpVvd~~~~~~Giit~~di~~ 110 (111)
T cd04603 81 IFRETEPPVVAVVDKEGKLVGTIYERELLR 110 (111)
T ss_pred HHHHcCCCeEEEEcCCCeEEEEEEhHHhhc
Confidence 999999999999999899999999999986
|
CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. |
| >cd04614 CBS_pair_1 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=99.53 E-value=9.5e-14 Score=112.40 Aligned_cols=95 Identities=23% Similarity=0.345 Sum_probs=83.5
Q ss_pred CeEEEeCCCcHHHHHHHHHhcCCCCCEEEEEcCCCcEEEeeccCcccCcchhHHHHHhhcChhhhhhhhccCCCCchhHH
Q 016003 198 DVVAVDYHSPASLALEAISRSLFDQTSVAVVDSDGFLIGEISPSTLGCCDETVAAAITTLSAGDLMAYIDCGGPPEDLVR 277 (397)
Q Consensus 198 ~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~is~~dl~~~~~~~~~~~~~ls~~Dl~~~~~~~~~~~~l~~ 277 (397)
+++++.+++++.+|++.|.+.++ +.+||+|++|+++|+ ++.+|++..
T Consensus 2 ~~~~v~~~~~i~~a~~~~~~~~~--~~~~V~d~~~~~~Gi-------------------v~~~dl~~~------------ 48 (96)
T cd04614 2 NVPTVWEETPLPVAVRIMELANV--KALPVLDDDGKLSGI-------------------ITERDLIAK------------ 48 (96)
T ss_pred CccEeCCCCcHHHHHHHHHHcCC--CeEEEECCCCCEEEE-------------------EEHHHHhcC------------
Confidence 57889999999999999999988 999999999999998 445555430
Q ss_pred HHHHHhhhcchhhhhhhhccccCCCCCCCCCCCCCccchhhhccccCCCccccccchhhhhcCCccEEeCCCCcHHHHHH
Q 016003 278 VVKERLKDKGLEGMLEHFDMSSSLMPYLSTSSSSDEESTATSKLTRSGKHSRSMSYSARMVRRAEAIVCHPTSSLMAVMI 357 (397)
Q Consensus 278 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~~~~sl~~v~~ 357 (397)
..+.+|.+++++.+++.
T Consensus 49 ---------------------------------------------------------------~~~~~v~~~~~l~~a~~ 65 (96)
T cd04614 49 ---------------------------------------------------------------SEVVTATKRTTVSECAQ 65 (96)
T ss_pred ---------------------------------------------------------------CCcEEecCCCCHHHHHH
Confidence 02588999999999999
Q ss_pred HHHHcCCcEEEEEcCCCcEEEEEehHHHHHH
Q 016003 358 QAIAHRVTYVWVIEDDCTLTGIVTFSDLLKV 388 (397)
Q Consensus 358 ~m~~~~i~rl~VVd~~~~lvGvVt~~DIl~~ 388 (397)
+|.+++++++||+|++|+++|+||++||+++
T Consensus 66 ~m~~~~~~~lpVv~~~~~~~Giit~~di~~~ 96 (96)
T cd04614 66 KMKRNRIEQIPIINGNDKLIGLLRDHDLLKP 96 (96)
T ss_pred HHHHhCCCeeeEECCCCcEEEEEEHHHhhcC
Confidence 9999999999999988899999999999874
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera |
| >cd04619 CBS_pair_6 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=99.50 E-value=3.1e-13 Score=112.16 Aligned_cols=111 Identities=17% Similarity=0.240 Sum_probs=87.7
Q ss_pred eEEEeCCCcHHHHHHHHHhcCCCCCEEEEEcCCCcEEEeeccCcccCcchhHHHHHhhcChhhhhhhhccCCCCchhHHH
Q 016003 199 VVAVDYHSPASLALEAISRSLFDQTSVAVVDSDGFLIGEISPSTLGCCDETVAAAITTLSAGDLMAYIDCGGPPEDLVRV 278 (397)
Q Consensus 199 v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~is~~dl~~~~~~~~~~~~~ls~~Dl~~~~~~~~~~~~l~~~ 278 (397)
|.++.+++++.+|++.|.+.+. ..+||+|++|+++|+|| .+|++.....
T Consensus 3 ~~~v~~~~~l~~a~~~~~~~~~--~~~~Vvd~~g~~~G~vt-------------------~~dl~~~~~~---------- 51 (114)
T cd04619 3 LAKIDVNATLQRAAKILGEPGI--DLVVVCDPHGKLAGVLT-------------------KTDVVRQMGR---------- 51 (114)
T ss_pred eEEECCCCcHHHHHHHHHhcCC--CEEEEECCCCCEEEEEe-------------------hHHHHHHHhh----------
Confidence 7789999999999999999988 99999999999999954 5555431100
Q ss_pred HHHHhhhcchhhhhhhhccccCCCCCCCCCCCCCccchhhhccccCCCccccccchhhhhcCCccEEeCCCCcHHHHHHH
Q 016003 279 VKERLKDKGLEGMLEHFDMSSSLMPYLSTSSSSDEESTATSKLTRSGKHSRSMSYSARMVRRAEAIVCHPTSSLMAVMIQ 358 (397)
Q Consensus 279 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~~~~sl~~v~~~ 358 (397)
. . ... . . ....+.|..++++|++++++.+++..
T Consensus 52 ----~------------~---~~~--------------~------~--------~~v~~~~~~~~~~v~~~~~l~~a~~~ 84 (114)
T cd04619 52 ----C------------G---GPG--------------C------T--------APVENVMTRAVVSCRPGDLLHDVWQV 84 (114)
T ss_pred ----c------------C---CCc--------------c------c--------CCHHHHhcCCCeeECCCCCHHHHHHH
Confidence 0 0 000 0 0 00113466788999999999999999
Q ss_pred HHHcCCcEEEEEcCCCcEEEEEehHHHHH
Q 016003 359 AIAHRVTYVWVIEDDCTLTGIVTFSDLLK 387 (397)
Q Consensus 359 m~~~~i~rl~VVd~~~~lvGvVt~~DIl~ 387 (397)
|.+++++++||+|++|+++|+||+.|+++
T Consensus 85 m~~~~~~~lpVvd~~~~~~Gvi~~~dl~~ 113 (114)
T cd04619 85 MKQRGLKNIPVVDENARPLGVLNARDALK 113 (114)
T ss_pred HHHcCCCeEEEECCCCcEEEEEEhHhhcc
Confidence 99999999999998899999999999986
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera |
| >COG3620 Predicted transcriptional regulator with C-terminal CBS domains [Transcription] | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.9e-13 Score=118.37 Aligned_cols=120 Identities=18% Similarity=0.236 Sum_probs=99.4
Q ss_pred hhhhhhcCCCCeEEEeCChhHHHHHHHHhhCCCceEEEEccCCCCCCCCCCCCCCCeEEEEEehhHHHHHHhhcCCCCCh
Q 016003 9 EVSDLCLGKPALRALSISAAIADALSALKNSDESFISVWDCNCCSNHRKLGDACECQCVGKVCMVDVICYLCKDSNSLSP 88 (397)
Q Consensus 9 ~v~dl~~~k~~li~v~~~~tv~~Al~~L~~~~I~s~PV~d~~~~~~~~~~~~~~~~~~vGiv~~~Dil~~l~~~~~l~~~ 88 (397)
++..+| +.+++++.+++++.+|+++|.++||+.+||.+. +.+||-|++.||++.+.++.
T Consensus 66 ta~~iM--~spvv~v~pdDsi~~vv~lM~~~g~SQlPVi~~--------------~k~VGsItE~~iv~~~le~~----- 124 (187)
T COG3620 66 TAKTIM--HSPVVSVSPDDSISDVVNLMRDKGISQLPVIEE--------------DKVVGSITENDIVRALLEGM----- 124 (187)
T ss_pred eHhhhc--cCCeeEECchhhHHHHHHHHHHcCCccCceeeC--------------CeeeeeecHHHHHHHHhccc-----
Confidence 577888 579999999999999999999999999999995 68999999999999988752
Q ss_pred hhhhcCChhhhccCCCCCceEEeCCCCCHHHHHHHHhcCCceEEEeccCcchhhhhhhcccccccccCCCCceeeeecHH
Q 016003 89 SLALKQPVSVLLPQLLPPLVMHVEPSCSLLEAMDLMLGGAQNLVVPIKNRLSIKRKQQQKLSSSSLTNHNGREFCWLTQE 168 (397)
Q Consensus 89 ~~~~~~~V~~lm~~~~~~~~~~V~~~~sL~~al~~m~~g~~r~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IITq~ 168 (397)
+......|+++|+.. |++|+++.+|..+-.++ .+...++|.. +|+.+||||+.
T Consensus 125 e~i~~~~vr~vM~e~----fP~Vs~~~~l~vI~~LL-~~~~AVlV~e----------------------~G~~vGIITk~ 177 (187)
T COG3620 125 ESIRSLRVREVMGEP----FPTVSPDESLNVISQLL-EEHPAVLVVE----------------------NGKVVGIITKA 177 (187)
T ss_pred cchhhhhHHHHhcCC----CCcCCCCCCHHHHHHHH-hhCCeEEEEe----------------------CCceEEEEeHH
Confidence 234467899999866 99999999987666554 4445555552 35789999999
Q ss_pred HHHHHHHh
Q 016003 169 DIIRFILS 176 (397)
Q Consensus 169 DIi~~l~~ 176 (397)
||++++.+
T Consensus 178 DI~k~~~~ 185 (187)
T COG3620 178 DIMKLLAG 185 (187)
T ss_pred HHHHHHhc
Confidence 99999864
|
|
| >cd04642 CBS_pair_29 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=99.49 E-value=4e-13 Score=113.48 Aligned_cols=124 Identities=27% Similarity=0.453 Sum_probs=88.6
Q ss_pred CeEEEeCCCcHHHHHHHHHhcCCCCCEEEEEcCCCcEEEeeccCcccCcchhHHHHHhhcChhhhhhhhccCCCCchhHH
Q 016003 198 DVVAVDYHSPASLALEAISRSLFDQTSVAVVDSDGFLIGEISPSTLGCCDETVAAAITTLSAGDLMAYIDCGGPPEDLVR 277 (397)
Q Consensus 198 ~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~is~~dl~~~~~~~~~~~~~ls~~Dl~~~~~~~~~~~~l~~ 277 (397)
+++++.+++++.+|++.|.++++ +++||+|++|+++|+++ .+|++.....+..
T Consensus 2 ~~~~v~~~~~~~~a~~~~~~~~~--~~i~V~d~~~~~~Giv~-------------------~~dl~~~~~~~~~------ 54 (126)
T cd04642 2 KVVSIDSDERVLDAFKLMRKNNI--SGLPVVDEKGKLIGNIS-------------------ASDLKGLLLSPDD------ 54 (126)
T ss_pred CeEEECCCccHHHHHHHHHHhCC--CcccEECCCCcEEEEEE-------------------HHHhhhhhcCcch------
Confidence 47889999999999999999988 99999999999999955 5555542210000
Q ss_pred HHHHHhhhcchhhhhhhhccccCCCCCCCCCCCCCccchhhhccccCCCccccccchhhhhcCCccEEeCCCCcHHHHHH
Q 016003 278 VVKERLKDKGLEGMLEHFDMSSSLMPYLSTSSSSDEESTATSKLTRSGKHSRSMSYSARMVRRAEAIVCHPTSSLMAVMI 357 (397)
Q Consensus 278 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~~~~sl~~v~~ 357 (397)
... .....+.. +. ++ .. .....+..++++|.+++++.++++
T Consensus 55 ----~~~-~~~~~~~~-~~--------------------~~--------~~-----~~~~~~~~~~~~v~~~~~l~~a~~ 95 (126)
T cd04642 55 ----LLL-YRTITFKE-LS--------------------EK--------FT-----DSDGVKSRPLITCTPSSTLKEVIT 95 (126)
T ss_pred ----hhc-ccchhhhh-hh--------------------hh--------cc-----cccccccCCCeEECCCCcHHHHHH
Confidence 000 00000000 00 00 00 001135668999999999999999
Q ss_pred HHHHcCCcEEEEEcCCCcEEEEEehHHHHH
Q 016003 358 QAIAHRVTYVWVIEDDCTLTGIVTFSDLLK 387 (397)
Q Consensus 358 ~m~~~~i~rl~VVd~~~~lvGvVt~~DIl~ 387 (397)
+|.+++++++||+|++++++|+||.+||++
T Consensus 96 ~~~~~~~~~l~Vvd~~~~~~Giit~~dil~ 125 (126)
T cd04642 96 KLVANKVHRVWVVDEEGKPIGVITLTDIIS 125 (126)
T ss_pred HHHHhCCcEEEEECCCCCEEEEEEHHHHhc
Confidence 999999999999999899999999999985
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener |
| >COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.6e-13 Score=139.56 Aligned_cols=118 Identities=21% Similarity=0.282 Sum_probs=98.9
Q ss_pred CCCcCeEEEeCCCcHHHHHHHHHhcCCCCCEEEEEcCCCcEEEeeccCcccCcchhHHHHHhhcChhhhhhhhccCCCCc
Q 016003 194 IISTDVVAVDYHSPASLALEAISRSLFDQTSVAVVDSDGFLIGEISPSTLGCCDETVAAAITTLSAGDLMAYIDCGGPPE 273 (397)
Q Consensus 194 ~~~~~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~is~~dl~~~~~~~~~~~~~ls~~Dl~~~~~~~~~~~ 273 (397)
+++.+.++|++.+|+.+|.+.|.++|+ +++.+++++|++.|||| .+|++..+
T Consensus 154 ~~~~~~~~v~~~~~i~~aa~km~~~gv--~s~v~l~~~~~~~GIvT-------------------~~dl~~~v------- 205 (610)
T COG2905 154 VKTLPAVTVSPQASIQDAARKMKDEGV--SSLVVLDDSGPLLGIVT-------------------RKDLRSRV------- 205 (610)
T ss_pred HhcCCCcccCccCcHHHHHHHHHhcCC--CeEEEEcCCCCccceee-------------------hHHHHHHH-------
Confidence 578899999999999999999999999 99999999999999954 66666522
Q ss_pred hhHHHHHHHhhhcchhhhhhhhccccCCCCCCCCCCCCCccchhhhccccCCCccccccchhhhhcCCccEEeCCCCcHH
Q 016003 274 DLVRVVKERLKDKGLEGMLEHFDMSSSLMPYLSTSSSSDEESTATSKLTRSGKHSRSMSYSARMVRRAEAIVCHPTSSLM 353 (397)
Q Consensus 274 ~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~~~~sl~ 353 (397)
+.. +.++ +.....+|+.|++++.+++-+-
T Consensus 206 ---------------------~~~---g~~~---------------------------~~~V~evmT~p~~svd~~~~~f 234 (610)
T COG2905 206 ---------------------IAD---GRSK---------------------------TQKVSEVMTSPVISVDRGDFLF 234 (610)
T ss_pred ---------------------Hhc---CCCc---------------------------ccchhhhhccCceeecCcchHH
Confidence 010 0100 1223357999999999999999
Q ss_pred HHHHHHHHcCCcEEEEEcCCCcEEEEEehHHHHHHHHH
Q 016003 354 AVMIQAIAHRVTYVWVIEDDCTLTGIVTFSDLLKVFRK 391 (397)
Q Consensus 354 ~v~~~m~~~~i~rl~VVd~~~~lvGvVt~~DIl~~l~~ 391 (397)
+||-+|.+++||||||+++ |+++||||++|||+.+.+
T Consensus 235 eAml~m~r~~I~hl~V~e~-gq~~Gilt~~dIl~l~s~ 271 (610)
T COG2905 235 EAMLMMLRNRIKHLPVTED-GQPLGILTLTDILRLFSQ 271 (610)
T ss_pred HHHHHHHHhCCceeeeecC-CeeeEEeeHHHHHHhhCC
Confidence 9999999999999999987 899999999999999864
|
|
| >PRK10892 D-arabinose 5-phosphate isomerase; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=4.1e-13 Score=132.68 Aligned_cols=119 Identities=22% Similarity=0.276 Sum_probs=94.7
Q ss_pred CccccCCCCc--CeEEEeCCCcHHHHHHHHHhcCCCCCEEEEEcCCCcEEEeeccCcccCcchhHHHHHhhcChhhhhhh
Q 016003 188 SIDSLGIIST--DVVAVDYHSPASLALEAISRSLFDQTSVAVVDSDGFLIGEISPSTLGCCDETVAAAITTLSAGDLMAY 265 (397)
Q Consensus 188 ti~~L~~~~~--~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~is~~dl~~~~~~~~~~~~~ls~~Dl~~~ 265 (397)
++++ +|++ +++++++++++.+|++.|.+.++ +.+||+|++|+++|+| +.+|+++.
T Consensus 203 ~V~d--im~~~~~~~~v~~~~sl~~a~~~~~~~~~--~~~vVvd~~g~lvGiv-------------------t~~Dl~~~ 259 (326)
T PRK10892 203 RVSD--IMHTGDEIPHVSKTASLRDALLEITRKNL--GMTVICDDNMKIEGIF-------------------TDGDLRRV 259 (326)
T ss_pred cHHH--HhCCCCCCeEECCCCCHHHHHHHHHhcCC--CeEEEEcCCCcEEEEE-------------------ecHHHHHH
Confidence 4444 7887 89999999999999999999888 8999999999999995 45665542
Q ss_pred hccCCCCchhHHHHHHHhhhcchhhhhhhhccccCCCCCCCCCCCCCccchhhhccccCCCccccccchhhhhcCCccEE
Q 016003 266 IDCGGPPEDLVRVVKERLKDKGLEGMLEHFDMSSSLMPYLSTSSSSDEESTATSKLTRSGKHSRSMSYSARMVRRAEAIV 345 (397)
Q Consensus 266 ~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it 345 (397)
...+ . .++ ..+..++|+.++++
T Consensus 260 ~~~~------------------~------------~~~----------------------------~~~v~~im~~~~~~ 281 (326)
T PRK10892 260 FDMG------------------I------------DLR----------------------------QASIADVMTPGGIR 281 (326)
T ss_pred HhcC------------------C------------Ccc----------------------------cCCHHHhcCCCCEE
Confidence 1100 0 000 00112457889999
Q ss_pred eCCCCcHHHHHHHHHHcCCcEEEEEcCCCcEEEEEehHHHHHH
Q 016003 346 CHPTSSLMAVMIQAIAHRVTYVWVIEDDCTLTGIVTFSDLLKV 388 (397)
Q Consensus 346 ~~~~~sl~~v~~~m~~~~i~rl~VVd~~~~lvGvVt~~DIl~~ 388 (397)
+.+++++.+++++|.+++++++||+|+ ++++||||++||+++
T Consensus 282 v~~~~~l~~a~~~m~~~~~~~lpVv~~-~~lvGiit~~dil~~ 323 (326)
T PRK10892 282 VRPGILAVDALNLMQSRHITSVLVADG-DHLLGVLHMHDLLRA 323 (326)
T ss_pred ECCCCCHHHHHHHHHHCCCcEEEEeeC-CEEEEEEEhHHhHhc
Confidence 999999999999999999999999985 799999999999985
|
|
| >PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=6.3e-13 Score=130.94 Aligned_cols=121 Identities=17% Similarity=0.235 Sum_probs=97.8
Q ss_pred cCCccccCCCCcC--eEEEeCCCcHHHHHHHHHhcCCCCCEEEEEcCCCcEEEeeccCcccCcchhHHHHHhhcChhhhh
Q 016003 186 ALSIDSLGIISTD--VVAVDYHSPASLALEAISRSLFDQTSVAVVDSDGFLIGEISPSTLGCCDETVAAAITTLSAGDLM 263 (397)
Q Consensus 186 ~~ti~~L~~~~~~--v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~is~~dl~~~~~~~~~~~~~ls~~Dl~ 263 (397)
..++++ +|+++ ++++++++++.+|++.|..++. +.+||||++|+++|+ ++.+|++
T Consensus 196 ~~~V~~--im~~~~~~~~v~~~~sv~~a~~~~~~~~~--~~~~Vvd~~g~~iG~-------------------vt~~dl~ 252 (321)
T PRK11543 196 LNKVHH--LMRRDDAIPQVALTASVMDAMLELSRTGL--GLVAVCDAQQQVQGV-------------------FTDGDLR 252 (321)
T ss_pred HhHHHH--HhccCCCCcEeCCCCCHHHHHHHHHHcCC--CEEEEEcCCCcEEEE-------------------ecHHHHH
Confidence 345555 79888 9999999999999999998888 999999999999999 5567766
Q ss_pred hhhccCCCCchhHHHHHHHhhhcchhhhhhhhccccCCCCCCCCCCCCCccchhhhccccCCCccccccchhhhhcCCcc
Q 016003 264 AYIDCGGPPEDLVRVVKERLKDKGLEGMLEHFDMSSSLMPYLSTSSSSDEESTATSKLTRSGKHSRSMSYSARMVRRAEA 343 (397)
Q Consensus 264 ~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (397)
..+... ..+ . ....++|..++
T Consensus 253 ~~~~~~-------------------------------~~~--------------------~--------~~v~~im~~~~ 273 (321)
T PRK11543 253 RWLVGG-------------------------------GAL--------------------T--------TPVNEAMTRGG 273 (321)
T ss_pred HHHhCC-------------------------------CCc--------------------C--------CcHHHhcCCCC
Confidence 522100 000 0 00123577889
Q ss_pred EEeCCCCcHHHHHHHHHHcCCcEEEEEcCCCcEEEEEehHHHHHH
Q 016003 344 IVCHPTSSLMAVMIQAIAHRVTYVWVIEDDCTLTGIVTFSDLLKV 388 (397)
Q Consensus 344 it~~~~~sl~~v~~~m~~~~i~rl~VVd~~~~lvGvVt~~DIl~~ 388 (397)
+++.+++++.+++++|.++++.++||||++|+++|+||+.||+++
T Consensus 274 ~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~lvGvIt~~di~~~ 318 (321)
T PRK11543 274 TTLQAQSRAIDAKEILMKRKITAAPVVDENGKLTGAINLQDFYQA 318 (321)
T ss_pred EEECCCCCHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHhc
Confidence 999999999999999999999999999988999999999999975
|
|
| >cd04617 CBS_pair_4 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.2e-12 Score=109.30 Aligned_cols=111 Identities=23% Similarity=0.247 Sum_probs=86.1
Q ss_pred CeEEEeCCCcHHHHHHHHHhcCCCCCEEEEEcCCCcEEEeeccCcccCcchhHHHHHhhcChhhhhhhhccCCCCchhHH
Q 016003 198 DVVAVDYHSPASLALEAISRSLFDQTSVAVVDSDGFLIGEISPSTLGCCDETVAAAITTLSAGDLMAYIDCGGPPEDLVR 277 (397)
Q Consensus 198 ~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~is~~dl~~~~~~~~~~~~~ls~~Dl~~~~~~~~~~~~l~~ 277 (397)
+++++++++++.+|++.|..+++ +.+||+|++|+++|+|+ ..|++......
T Consensus 2 ~~~~~~~~~~~~~a~~~~~~~~~--~~~~V~d~~~~~~Givt-------------------~~dl~~~~~~~-------- 52 (118)
T cd04617 2 PPVVVRENTSVYDAIVTLFLEDV--GSLFVVDEDGDLVGVVS-------------------RKDLLKASIGG-------- 52 (118)
T ss_pred CCEEECCCCCHHHHHHHHHHcCC--CEEEEEcCCCCEEEEEE-------------------HHHHHHHHHcC--------
Confidence 56889999999999999999999 99999999899999954 55554411000
Q ss_pred HHHHHhhhcchhhhhhhhccccCCCCCCCCCCCCCccchhhhccccCCCccccccchhhhhcC--CccEEeCCCCcHHHH
Q 016003 278 VVKERLKDKGLEGMLEHFDMSSSLMPYLSTSSSSDEESTATSKLTRSGKHSRSMSYSARMVRR--AEAIVCHPTSSLMAV 355 (397)
Q Consensus 278 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~it~~~~~sl~~v 355 (397)
..+ .... ...+|. .++.++++++++.++
T Consensus 53 ----------------------~~~--------------------~~~~--------~~~~~~~~~~~~~v~~~~~l~~~ 82 (118)
T cd04617 53 ----------------------ADL--------------------QKVP--------VGVIMTRMPNITTTTPEESVLEA 82 (118)
T ss_pred ----------------------CCc--------------------cCCC--------HHHHhCCCCCcEEECCCCcHHHH
Confidence 000 0000 012344 368899999999999
Q ss_pred HHHHHHcCCcEEEEEcCC---CcEEEEEehHHHHH
Q 016003 356 MIQAIAHRVTYVWVIEDD---CTLTGIVTFSDLLK 387 (397)
Q Consensus 356 ~~~m~~~~i~rl~VVd~~---~~lvGvVt~~DIl~ 387 (397)
+++|.+++++++||||++ |+++|+||.+||++
T Consensus 83 ~~~~~~~~~~~lpVvd~~~~~~~l~Gvit~~~l~~ 117 (118)
T cd04617 83 AKKLIEHQVDSLPVVEKVDEGLEVIGRITKTNITK 117 (118)
T ss_pred HHHHHHcCCCEeeEEeCCCccceEEEEEEhhheec
Confidence 999999999999999987 69999999999975
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera |
| >cd04630 CBS_pair_17 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.4e-12 Score=107.84 Aligned_cols=112 Identities=17% Similarity=0.218 Sum_probs=88.2
Q ss_pred CeEEEeCCCcHHHHHHHHHhcCCCCCEEEEEcCC-CcEEEeeccCcccCcchhHHHHHhhcChhhhhhhhccCCCCchhH
Q 016003 198 DVVAVDYHSPASLALEAISRSLFDQTSVAVVDSD-GFLIGEISPSTLGCCDETVAAAITTLSAGDLMAYIDCGGPPEDLV 276 (397)
Q Consensus 198 ~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~-g~lvG~is~~dl~~~~~~~~~~~~~ls~~Dl~~~~~~~~~~~~l~ 276 (397)
++.++.+++++.+|++.|.++++ +.+||+|++ |+++|+ ++.+|++..+...
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~--~~~~V~~~~~~~~~G~-------------------v~~~dl~~~~~~~------- 53 (114)
T cd04630 2 NVVTIDGLATVAEALQLMKEHGV--SSLVVEKRRESDAYGI-------------------VTMRDILKKVVAE------- 53 (114)
T ss_pred CcEEECCCCcHHHHHHHHHHcCC--CEEEEEECCCCcEEEE-------------------EehHHHHHHHHhC-------
Confidence 57889999999999999998888 999999987 899999 5566766522100
Q ss_pred HHHHHHhhhcchhhhhhhhccccCCCCCCCCCCCCCccchhhhccccCCCccccccchhhhhcCCccEEeCCCCcHHHHH
Q 016003 277 RVVKERLKDKGLEGMLEHFDMSSSLMPYLSTSSSSDEESTATSKLTRSGKHSRSMSYSARMVRRAEAIVCHPTSSLMAVM 356 (397)
Q Consensus 277 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~~~~sl~~v~ 356 (397)
. . .+ . ......+|..++.++++++++.+++
T Consensus 54 ----------~--------~-----~~-------------~--------------~~~v~~~~~~~~~~v~~~~~l~~~~ 83 (114)
T cd04630 54 ----------G--------R-----DP-------------D--------------RVNVYEIMTKPLISVSPDMDIKYCA 83 (114)
T ss_pred ----------C--------C-----CC-------------C--------------ccCHHHHhcCCCeeECCCCCHHHHH
Confidence 0 0 00 0 0001124566889999999999999
Q ss_pred HHHHHcCCcEEEEEcCCCcEEEEEehHHHHHH
Q 016003 357 IQAIAHRVTYVWVIEDDCTLTGIVTFSDLLKV 388 (397)
Q Consensus 357 ~~m~~~~i~rl~VVd~~~~lvGvVt~~DIl~~ 388 (397)
.+|.+++.+++||+|+ |+++|+||+.||+++
T Consensus 84 ~~~~~~~~~~~~Vvd~-~~~~Gvi~~~dl~~~ 114 (114)
T cd04630 84 RLMERTNIRRAPVVEN-NELIGIISLTDIFLA 114 (114)
T ss_pred HHHHHcCCCEeeEeeC-CEEEEEEEHHHhhcC
Confidence 9999999999999998 899999999999863
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener |
| >cd04600 CBS_pair_HPP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the HPP motif domain | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.2e-12 Score=109.46 Aligned_cols=123 Identities=23% Similarity=0.279 Sum_probs=90.5
Q ss_pred cCeEEEeCCCcHHHHHHHHHhcCCCCCEEEEEcCCCcEEEeeccCcccCcchhHHHHHhhcChhhhhhhhccCCCCchhH
Q 016003 197 TDVVAVDYHSPASLALEAISRSLFDQTSVAVVDSDGFLIGEISPSTLGCCDETVAAAITTLSAGDLMAYIDCGGPPEDLV 276 (397)
Q Consensus 197 ~~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~is~~dl~~~~~~~~~~~~~ls~~Dl~~~~~~~~~~~~l~ 276 (397)
+++.++.++.++.++++.|.+.+. +.+||+|++|+++|+++ .+|++.+....... ..
T Consensus 2 ~~~~~v~~~~~~~~~~~~~~~~~~--~~~~V~~~~~~~~Giv~-------------------~~~l~~~~~~~~~~-~~- 58 (124)
T cd04600 2 RDVVTVTPDTSLEEAWALLRRHRI--KALPVVDGDRRLVGIVT-------------------QRDLLRHARPDGRR-PL- 58 (124)
T ss_pred CCcEEeCCCCCHHHHHHHHHHcCC--ceeeEECCCCCEEEEEE-------------------HHHHHhhhcccccc-hh-
Confidence 578899999999999999999888 99999999899999955 45544322100000 00
Q ss_pred HHHHHHhhhcchhhhhhhhccccCCCCCCCCCCCCCccchhhhccccCCCccccccchhhhhcCCccEEeCCCCcHHHHH
Q 016003 277 RVVKERLKDKGLEGMLEHFDMSSSLMPYLSTSSSSDEESTATSKLTRSGKHSRSMSYSARMVRRAEAIVCHPTSSLMAVM 356 (397)
Q Consensus 277 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~~~~sl~~v~ 356 (397)
.+ . +.. ... ......+|..+++++.+++++.+++
T Consensus 59 -----------~~-~---~~~-------------------------~~~------~~~i~~~~~~~~~~~~~~~~l~~~~ 92 (124)
T cd04600 59 -----------RG-R---LRG-------------------------RDK------PETVGDIMSPPVVTVRPDTPIAELV 92 (124)
T ss_pred -----------hh-h---hhc-------------------------ccc------cccHHHhccCCCeeeCCCCcHHHHH
Confidence 00 0 000 000 0011234677899999999999999
Q ss_pred HHHHHcCCcEEEEEcCCCcEEEEEehHHHHHH
Q 016003 357 IQAIAHRVTYVWVIEDDCTLTGIVTFSDLLKV 388 (397)
Q Consensus 357 ~~m~~~~i~rl~VVd~~~~lvGvVt~~DIl~~ 388 (397)
++|.+++.+++||+|++|+++|+||..|++++
T Consensus 93 ~~~~~~~~~~~~Vv~~~g~~~Gvit~~di~~~ 124 (124)
T cd04600 93 PLLADGGHHHVPVVDEDRRLVGIVTQTDLIAA 124 (124)
T ss_pred HHHHhcCCCceeEEcCCCCEEEEEEhHHhhcC
Confidence 99999999999999988999999999999864
|
These proteins are integral membrane proteins with four transmembrane spanning helices. The function of these proteins is uncertain, but they are thought to be transporters. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. |
| >COG3448 CBS-domain-containing membrane protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.44 E-value=4.5e-13 Score=126.54 Aligned_cols=131 Identities=18% Similarity=0.162 Sum_probs=107.6
Q ss_pred ccchhhhhhcCCCCeEEEeCChhHHHHHHHHhhCCCceEEEEccCCCCCCCCCCCCCCCeEEEEEehhHHHHHHhhcCCC
Q 016003 6 LADEVSDLCLGKPALRALSISAAIADALSALKNSDESFISVWDCNCCSNHRKLGDACECQCVGKVCMVDVICYLCKDSNS 85 (397)
Q Consensus 6 ~~~~v~dl~~~k~~li~v~~~~tv~~Al~~L~~~~I~s~PV~d~~~~~~~~~~~~~~~~~~vGiv~~~Dil~~l~~~~~l 85 (397)
..-++.|+| ++.++++..++|+.+|.++|.+|+|..+||.|+ +.+++|||+.+|++....- ...
T Consensus 243 ~~LtcadIM--SrdVvtv~~~ts~dhA~~ll~~H~ikaLPV~d~-------------~~rl~GiVt~~dl~~~a~~-~p~ 306 (382)
T COG3448 243 GELTCADIM--SRDVVTVSTDTSIDHARKLLQEHRIKALPVLDE-------------HRRLVGIVTQRDLLKHARP-SPF 306 (382)
T ss_pred ccccHHHhc--CccceecCCcCChHHHHHHHHHcCccccccccc-------------ccceeeeeeHHHHhhccCc-chH
Confidence 455789999 799999999999999999999999999999997 3589999999999975432 111
Q ss_pred CChhhhhcCChhhhccCCCCCceEEeCCCCCHHHHHHHHh-cCCceEEEeccCcchhhhhhhcccccccccCCCCceeee
Q 016003 86 LSPSLALKQPVSVLLPQLLPPLVMHVEPSCSLLEAMDLML-GGAQNLVVPIKNRLSIKRKQQQKLSSSSLTNHNGREFCW 164 (397)
Q Consensus 86 ~~~~~~~~~~V~~lm~~~~~~~~~~V~~~~sL~~al~~m~-~g~~r~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I 164 (397)
+.....-...|+.+|+. ++.++.|+++..+++-.+. .|.|.++|.+. .|+.+||
T Consensus 307 qrlr~~~~~~vk~imt~----~v~tv~pdtpa~~lvp~lad~g~H~lpvld~---------------------~g~lvGI 361 (382)
T COG3448 307 QRLRFLRPPTVKGIMTT----PVVTVRPDTPAVELVPRLADEGLHALPVLDA---------------------AGKLVGI 361 (382)
T ss_pred HHhhccCCCcccccccC----cceeecCCCcHHHHHHHhhcCCcceeeEEcC---------------------CCcEEEE
Confidence 11222234679999964 4899999999999999998 78999988763 3688999
Q ss_pred ecHHHHHHHHHhc
Q 016003 165 LTQEDIIRFILSS 177 (397)
Q Consensus 165 ITq~DIi~~l~~~ 177 (397)
|||+|++.-++.+
T Consensus 362 vsQtDliaal~r~ 374 (382)
T COG3448 362 VSQTDLIAALYRN 374 (382)
T ss_pred eeHHHHHHHHHHH
Confidence 9999999988864
|
|
| >cd04608 CBS_pair_PALP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream | Back alignment and domain information |
|---|
Probab=99.43 E-value=2.8e-13 Score=114.83 Aligned_cols=114 Identities=20% Similarity=0.204 Sum_probs=89.2
Q ss_pred cCeEEEeCCCcHHHHHHHHHhcCCCCCEEEEEcCCCcEEEeeccCcccCcchhHHHHHhhcChhhhhhhhccCCCCchhH
Q 016003 197 TDVVAVDYHSPASLALEAISRSLFDQTSVAVVDSDGFLIGEISPSTLGCCDETVAAAITTLSAGDLMAYIDCGGPPEDLV 276 (397)
Q Consensus 197 ~~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~is~~dl~~~~~~~~~~~~~ls~~Dl~~~~~~~~~~~~l~ 276 (397)
++++++.++.++.+|++.|.++++ +.+||+|++|+++|+ ++..|++..+...
T Consensus 2 ~~~~~v~~~~~v~~a~~~m~~~~~--~~~~Vvd~~~~~~Gi-------------------i~~~dl~~~~~~~------- 53 (124)
T cd04608 2 KAPVTVLPTVTCAEAIEILKEKGF--DQLPVVDESGKILGM-------------------VTLGNLLSSLSSG------- 53 (124)
T ss_pred CCCEEECCCCCHHHHHHHHHHcCC--CEEEEEcCCCCEEEE-------------------EEHHHHHHHHHHh-------
Confidence 457889999999999999999998 999999999999999 4566665421100
Q ss_pred HHHHHHhhhcchhhhhhhhccccCCCCCCCCCCCCCccchhhhccccCCCccccccchhhhhcCCccEEeCCCCcHHHHH
Q 016003 277 RVVKERLKDKGLEGMLEHFDMSSSLMPYLSTSSSSDEESTATSKLTRSGKHSRSMSYSARMVRRAEAIVCHPTSSLMAVM 356 (397)
Q Consensus 277 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~~~~sl~~v~ 356 (397)
+ .. .. ....++|..++++|++++++.+++
T Consensus 54 -----~------------~~--------------------------~~--------~~v~~im~~~~~~v~~~~~~~~v~ 82 (124)
T cd04608 54 -----K------------VQ--------------------------PS--------DPVSKALYKQFKRVNKNDTLGKLS 82 (124)
T ss_pred -----c------------cC--------------------------CC--------CcHHHHhhccceecCCCCCHHHHH
Confidence 0 00 00 012346888999999999999999
Q ss_pred HHH---------HHcCCcEEEEEcCCCcEEEEEehHHHHHHH
Q 016003 357 IQA---------IAHRVTYVWVIEDDCTLTGIVTFSDLLKVF 389 (397)
Q Consensus 357 ~~m---------~~~~i~rl~VVd~~~~lvGvVt~~DIl~~l 389 (397)
++| .+.+.+++||+|++|+++||||.+||++++
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~Givt~~Dl~~~~ 124 (124)
T cd04608 83 RILETDAFLLVFFEQISSAAIGKEKQEKPIGIVTKIDLLSYI 124 (124)
T ss_pred hhcccCCceEEEeccccccccccccccceEEEEehhHhhhhC
Confidence 965 344789999999889999999999999874
|
The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a poten |
| >cd04627 CBS_pair_14 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=99.41 E-value=2.2e-12 Score=108.31 Aligned_cols=118 Identities=16% Similarity=0.218 Sum_probs=86.0
Q ss_pred CeEEEeCCCcHHHHHHHHHhcCCCCCEEEEEcCC-CcEEEeeccCcccCcchhHHHHHhhcChhhhhhhhccCCCCchhH
Q 016003 198 DVVAVDYHSPASLALEAISRSLFDQTSVAVVDSD-GFLIGEISPSTLGCCDETVAAAITTLSAGDLMAYIDCGGPPEDLV 276 (397)
Q Consensus 198 ~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~-g~lvG~is~~dl~~~~~~~~~~~~~ls~~Dl~~~~~~~~~~~~l~ 276 (397)
++.++.+++++.+|++.|..+++ +.+||+|++ |+++|+|+ ..|++......
T Consensus 2 ~~~~v~~~~~i~~a~~~~~~~~~--~~~~V~d~~~~~~~Giv~-------------------~~dl~~~~~~~------- 53 (123)
T cd04627 2 PFIPVPSTASLFQAIEILGSGGI--HRVAVTEEESGEVIGILS-------------------QRRLVEFLWEN------- 53 (123)
T ss_pred CceecCCCCCHHHHHHHHhhCCc--ceEEEEeCCCCcEEEEEE-------------------HHHHHHHHHHh-------
Confidence 57889999999999999998888 999999997 99999955 55554421100
Q ss_pred HHHHHHhhhcchhhhhhhhccccCCCCCCCCCCCCCccchhhhccccCCCccccccchhhhhcCCccEEeCCCCcHHHHH
Q 016003 277 RVVKERLKDKGLEGMLEHFDMSSSLMPYLSTSSSSDEESTATSKLTRSGKHSRSMSYSARMVRRAEAIVCHPTSSLMAVM 356 (397)
Q Consensus 277 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~~~~sl~~v~ 356 (397)
. .. .. . .++. .+. . ......|..++.++++++++.+++
T Consensus 54 -----~------~~----~~----~---------------~~~~-~~~-~------~~~~~~~~~~~~~v~~~~~l~~a~ 91 (123)
T cd04627 54 -----A------RS----FP----G---------------LDPL-YPI-P------LRDLTIGTSDVISINGDQPLIDAL 91 (123)
T ss_pred -----H------Hh----cc----c---------------hhhh-hhh-h------hhhcccCcCCceEeCCCCCHHHHH
Confidence 0 00 00 0 0000 000 0 000113567889999999999999
Q ss_pred HHHHHcCCcEEEEEcCCCcEEEEEehHHH
Q 016003 357 IQAIAHRVTYVWVIEDDCTLTGIVTFSDL 385 (397)
Q Consensus 357 ~~m~~~~i~rl~VVd~~~~lvGvVt~~DI 385 (397)
++|.+++++++||+|++++++|+||.+||
T Consensus 92 ~~m~~~~~~~lpVvd~~~~~vGiit~~di 120 (123)
T cd04627 92 HLMHNEGISSVAVVDNQGNLIGNISVTDV 120 (123)
T ss_pred HHHHHcCCceEEEECCCCcEEEEEeHHHh
Confidence 99999999999999998999999999997
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener |
| >cd04631 CBS_pair_18 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=99.41 E-value=2.3e-12 Score=107.94 Aligned_cols=124 Identities=30% Similarity=0.387 Sum_probs=90.4
Q ss_pred cCeEEEeCCCcHHHHHHHHHhcCCCCCEEEEEcCC-CcEEEeeccCcccCcchhHHHHHhhcChhhhhhhhccCCCCchh
Q 016003 197 TDVVAVDYHSPASLALEAISRSLFDQTSVAVVDSD-GFLIGEISPSTLGCCDETVAAAITTLSAGDLMAYIDCGGPPEDL 275 (397)
Q Consensus 197 ~~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~-g~lvG~is~~dl~~~~~~~~~~~~~ls~~Dl~~~~~~~~~~~~l 275 (397)
++++++.++.++.+|+++|.+.+. .++||+|++ |+++|+| +..|++.++.....+
T Consensus 1 ~~~~~v~~~~~~~~~~~~~~~~~~--~~i~V~d~~~~~~~G~v-------------------~~~dl~~~~~~~~~~--- 56 (125)
T cd04631 1 KDVVTVPPTTPIMEAAKIMVRNGF--RRLPVVDEGTGKLVGII-------------------TATDILKYLGGGEKF--- 56 (125)
T ss_pred CCceEeCCCCcHHHHHHHHHHcCc--ccceeEeCCCCEEEEEE-------------------EHHHHHHHhhccchh---
Confidence 357889999999999999999988 999999987 9999995 455655433210000
Q ss_pred HHHHHHHhhhcchhhhhhhhccccCCCCCCCCCCCCCccchhhhccccCCCccccccchhhhhcCCccEEeCCCCcHHHH
Q 016003 276 VRVVKERLKDKGLEGMLEHFDMSSSLMPYLSTSSSSDEESTATSKLTRSGKHSRSMSYSARMVRRAEAIVCHPTSSLMAV 355 (397)
Q Consensus 276 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~~~~sl~~v 355 (397)
... ... . ..+ ..+.+...++..++++|.+++++.++
T Consensus 57 -------------~~~---~~~--~---------------~~~-----------~~~~~~~~~~~~~~~~v~~~~~l~~~ 92 (125)
T cd04631 57 -------------NKI---KTG--N---------------GLE-----------AINEPVRSIMTRNVITITPDDSIKDA 92 (125)
T ss_pred -------------ccc---ccc--c---------------cch-----------hhhcCHHHHhcCCceEeCCCCcHHHH
Confidence 000 000 0 000 00011223456789999999999999
Q ss_pred HHHHHHcCCcEEEEEcCCCcEEEEEehHHHHHH
Q 016003 356 MIQAIAHRVTYVWVIEDDCTLTGIVTFSDLLKV 388 (397)
Q Consensus 356 ~~~m~~~~i~rl~VVd~~~~lvGvVt~~DIl~~ 388 (397)
++.|.+++.+++||+|++|+++|+||..||+++
T Consensus 93 ~~~~~~~~~~~~~V~~~~~~~~Gvit~~di~~~ 125 (125)
T cd04631 93 AELMLEKRVGGLPVVDDDGKLVGIVTERDLLKA 125 (125)
T ss_pred HHHHHHcCCceEEEEcCCCcEEEEEEHHHhhcC
Confidence 999999999999999988899999999999874
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener |
| >cd04596 CBS_pair_DRTGG_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream | Back alignment and domain information |
|---|
Probab=99.40 E-value=3.6e-12 Score=104.38 Aligned_cols=106 Identities=20% Similarity=0.222 Sum_probs=86.6
Q ss_pred cCeEEEeCCCcHHHHHHHHHhcCCCCCEEEEEcCCCcEEEeeccCcccCcchhHHHHHhhcChhhhhhhhccCCCCchhH
Q 016003 197 TDVVAVDYHSPASLALEAISRSLFDQTSVAVVDSDGFLIGEISPSTLGCCDETVAAAITTLSAGDLMAYIDCGGPPEDLV 276 (397)
Q Consensus 197 ~~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~is~~dl~~~~~~~~~~~~~ls~~Dl~~~~~~~~~~~~l~ 276 (397)
.++.++.+++++.+|++.|.+++. +.+||+|++|+++|+| +..|++.....
T Consensus 2 ~~~~~~~~~~~~~~a~~~~~~~~~--~~~~V~d~~~~~~G~v-------------------~~~~l~~~~~~-------- 52 (108)
T cd04596 2 EDTGYLTTTDTVKDWHELNKETGH--SRFPVVDEKNKVVGIV-------------------TSKDVAGKDPD-------- 52 (108)
T ss_pred CccEEeCCCCCHHHHHHHHHHcCC--CceeEECCCCeEEEEe-------------------cHHHHhccccc--------
Confidence 357889999999999999999888 9999999999999995 45555431000
Q ss_pred HHHHHHhhhcchhhhhhhhccccCCCCCCCCCCCCCccchhhhccccCCCccccccchhhhhcCCccEEeCCCCcHHHHH
Q 016003 277 RVVKERLKDKGLEGMLEHFDMSSSLMPYLSTSSSSDEESTATSKLTRSGKHSRSMSYSARMVRRAEAIVCHPTSSLMAVM 356 (397)
Q Consensus 277 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~~~~sl~~v~ 356 (397)
..+ ...|..++.++.+++++.+++
T Consensus 53 ---------~~v-----------------------------------------------~~~~~~~~~~v~~~~~l~~~~ 76 (108)
T cd04596 53 ---------TTI-----------------------------------------------EKVMTKNPITVNPKTSVASVA 76 (108)
T ss_pred ---------ccH-----------------------------------------------HHHhcCCCeEECCCCCHHHHH
Confidence 000 012455788999999999999
Q ss_pred HHHHHcCCcEEEEEcCCCcEEEEEehHHHHH
Q 016003 357 IQAIAHRVTYVWVIEDDCTLTGIVTFSDLLK 387 (397)
Q Consensus 357 ~~m~~~~i~rl~VVd~~~~lvGvVt~~DIl~ 387 (397)
++|.+++.+.+||+|++|+++|+||+.||++
T Consensus 77 ~~~~~~~~~~~~Vv~~~~~~~G~it~~di~~ 107 (108)
T cd04596 77 HMMIWEGIEMLPVVDDNKKLLGIISRQDVLK 107 (108)
T ss_pred HHHHHcCCCeeeEEcCCCCEEEEEEHHHhhc
Confidence 9999999999999998899999999999986
|
The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. |
| >PRK07807 inosine 5-monophosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.40 E-value=2.4e-12 Score=132.93 Aligned_cols=113 Identities=19% Similarity=0.216 Sum_probs=95.5
Q ss_pred CCCcCeEEEeCCCcHHHHHHHHHhcCCCCCEEEEEcCCCcEEEeeccCcccCcchhHHHHHhhcChhhhhhhhccCCCCc
Q 016003 194 IISTDVVAVDYHSPASLALEAISRSLFDQTSVAVVDSDGFLIGEISPSTLGCCDETVAAAITTLSAGDLMAYIDCGGPPE 273 (397)
Q Consensus 194 ~~~~~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~is~~dl~~~~~~~~~~~~~ls~~Dl~~~~~~~~~~~ 273 (397)
+|.++++++.+++++.+|+++|.++++ +++||+|++|+++|+| +.+|+... +.
T Consensus 94 iMi~~pvtv~~d~tv~eA~~~m~~~~~--s~l~VVD~~gklvGIV-------------------T~rDL~~~-~~----- 146 (479)
T PRK07807 94 LVFDTPVTLSPDDTVGDALALLPKRAH--GAVVVVDEEGRPVGVV-------------------TEADCAGV-DR----- 146 (479)
T ss_pred ccccCCeEECCCCCHHHHHHHHHhcCC--ceEEEECCCCeEEEEE-------------------eHHHHhcC-cc-----
Confidence 688999999999999999999999999 9999999999999995 45555320 00
Q ss_pred hhHHHHHHHhhhcchhhhhhhhccccCCCCCCCCCCCCCccchhhhccccCCCccccccchhhhhcCCccEEeCCCCcHH
Q 016003 274 DLVRVVKERLKDKGLEGMLEHFDMSSSLMPYLSTSSSSDEESTATSKLTRSGKHSRSMSYSARMVRRAEAIVCHPTSSLM 353 (397)
Q Consensus 274 ~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~~~~sl~ 353 (397)
... ..++|+.+++++++++++.
T Consensus 147 --------------------------------------------------~~~--------V~diMt~~~itV~~d~sL~ 168 (479)
T PRK07807 147 --------------------------------------------------FTQ--------VRDVMSTDLVTLPAGTDPR 168 (479)
T ss_pred --------------------------------------------------CCC--------HHHhccCCceEECCCCcHH
Confidence 000 1134678999999999999
Q ss_pred HHHHHHHHcCCcEEEEEcCCCcEEEEEehHHHHHHHHH
Q 016003 354 AVMIQAIAHRVTYVWVIEDDCTLTGIVTFSDLLKVFRK 391 (397)
Q Consensus 354 ~v~~~m~~~~i~rl~VVd~~~~lvGvVt~~DIl~~l~~ 391 (397)
++++.|.+++++++||||++++++|+||.+||++....
T Consensus 169 eAl~lM~~~~i~~LPVVD~~g~lvGIIT~~DIl~~~~~ 206 (479)
T PRK07807 169 EAFDLLEAARVKLAPVVDADGRLVGVLTRTGALRATIY 206 (479)
T ss_pred HHHHHHHhcCCCEEEEEcCCCeEEEEEEHHHHHHHhhC
Confidence 99999999999999999998999999999999997653
|
|
| >cd04605 CBS_pair_MET2_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the MET2 domain | Back alignment and domain information |
|---|
Probab=99.39 E-value=8e-12 Score=102.28 Aligned_cols=108 Identities=19% Similarity=0.283 Sum_probs=87.9
Q ss_pred cCeEEEeCCCcHHHHHHHHHhcCCCCCEEEEEcCCCcEEEeeccCcccCcchhHHHHHhhcChhhhhhhhccCCCCchhH
Q 016003 197 TDVVAVDYHSPASLALEAISRSLFDQTSVAVVDSDGFLIGEISPSTLGCCDETVAAAITTLSAGDLMAYIDCGGPPEDLV 276 (397)
Q Consensus 197 ~~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~is~~dl~~~~~~~~~~~~~ls~~Dl~~~~~~~~~~~~l~ 276 (397)
++++++.++.++.+|++.|.+++. +.+||+|++|+++|++ +..|++......
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~V~d~~~~~~G~v-------------------~~~~l~~~~~~~------- 53 (110)
T cd04605 2 RPVVTISEDASIKEAAKLMIEENI--NHLPVVDEDGRLVGIV-------------------TSWDISKAVARD------- 53 (110)
T ss_pred CCCEEECCCCCHHHHHHHHHhCCC--ceEEEECCCCcEEEEE-------------------eHHHHHHHHhhC-------
Confidence 567889999999999999999988 9999999999999994 566665421100
Q ss_pred HHHHHHhhhcchhhhhhhhccccCCCCCCCCCCCCCccchhhhccccCCCccccccchhhhhcCCccEEeCCCCcHHHHH
Q 016003 277 RVVKERLKDKGLEGMLEHFDMSSSLMPYLSTSSSSDEESTATSKLTRSGKHSRSMSYSARMVRRAEAIVCHPTSSLMAVM 356 (397)
Q Consensus 277 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~~~~sl~~v~ 356 (397)
. . . ....|..++.+|.+++++.+++
T Consensus 54 -------------------------~--------------------~--~--------~~~~~~~~~~~v~~~~~l~~~~ 78 (110)
T cd04605 54 -------------------------K--------------------K--S--------VEDIMTRNVITATPDEPIDVAA 78 (110)
T ss_pred -------------------------c--------------------c--C--------HHHhcCCCCeEECCCCcHHHHH
Confidence 0 0 0 0112456788999999999999
Q ss_pred HHHHHcCCcEEEEEcCCCcEEEEEehHHHHH
Q 016003 357 IQAIAHRVTYVWVIEDDCTLTGIVTFSDLLK 387 (397)
Q Consensus 357 ~~m~~~~i~rl~VVd~~~~lvGvVt~~DIl~ 387 (397)
+.|.+++.+++||+|++|+++|+||+.||++
T Consensus 79 ~~~~~~~~~~~~Vv~~~~~~~G~v~~~di~~ 109 (110)
T cd04605 79 RKMERHNISALPVVDAENRVIGIITSEDISK 109 (110)
T ss_pred HHHHHhCCCEEeEECCCCcEEEEEEHHHhhh
Confidence 9999999999999999899999999999975
|
Met2 is a key enzyme in the biosynthesis of methionine. It encodes a homoserine transacetylase involved in converting homoserine to O-acetyl homoserine. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. |
| >cd04618 CBS_pair_5 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=99.39 E-value=3.4e-12 Score=103.89 Aligned_cols=96 Identities=26% Similarity=0.399 Sum_probs=82.7
Q ss_pred CeEEEeCChhHHHHHHHHhhCCCceEEEEccCCCCCCCCCCCCCCCeEEEEEehhHHHHHHhhcCCCCChhhhhcCChhh
Q 016003 19 ALRALSISAAIADALSALKNSDESFISVWDCNCCSNHRKLGDACECQCVGKVCMVDVICYLCKDSNSLSPSLALKQPVSV 98 (397)
Q Consensus 19 ~li~v~~~~tv~~Al~~L~~~~I~s~PV~d~~~~~~~~~~~~~~~~~~vGiv~~~Dil~~l~~~~~l~~~~~~~~~~V~~ 98 (397)
.++++++++|+.+|++.|.++++.++||+|++ +++++|+++..|+...+.
T Consensus 2 ~~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~~------------~~~~~Givt~~Dl~~~~~------------------ 51 (98)
T cd04618 2 KLVVFDTKLPVKKAFNALVENGIRSAPLWDSR------------KQQFVGMLTITDFILILR------------------ 51 (98)
T ss_pred eEEEECCCCcHHHHHHHHHHcCCceEEEEeCC------------CCEEEEEEEHHHHhhhee------------------
Confidence 47899999999999999999999999999963 268999999999986421
Q ss_pred hccCCCCCceEEeCCCCCHHHHHHHHh-cCCceEEEeccCcchhhhhhhcccccccccCCCCceeeeecHHHHHHH
Q 016003 99 LLPQLLPPLVMHVEPSCSLLEAMDLML-GGAQNLVVPIKNRLSIKRKQQQKLSSSSLTNHNGREFCWLTQEDIIRF 173 (397)
Q Consensus 99 lm~~~~~~~~~~V~~~~sL~~al~~m~-~g~~r~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IITq~DIi~~ 173 (397)
+.++.|+++|.+|++.|. +++++++|.+.+ +++.+|+||++|++++
T Consensus 52 ---------~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~--------------------~~~~~giit~~d~~~~ 98 (98)
T cd04618 52 ---------LVSIHPERSLFDAALLLLKNKIHRLPVIDPS--------------------TGTGLYILTSRRILKF 98 (98)
T ss_pred ---------eEEeCCCCcHHHHHHHHHHCCCCEeeEEECC--------------------CCCceEEeehhhhhcC
Confidence 678999999999999999 899999998632 1467899999999863
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera |
| >cd04632 CBS_pair_19 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=99.39 E-value=3.6e-12 Score=107.64 Aligned_cols=125 Identities=20% Similarity=0.323 Sum_probs=88.6
Q ss_pred CeEEEeCCCcHHHHHHHHHhcCCCCCEEEEEcCCCcEEEeeccCcccCcchhHHHHHhhcChhhhhhhhccCCCCchhHH
Q 016003 198 DVVAVDYHSPASLALEAISRSLFDQTSVAVVDSDGFLIGEISPSTLGCCDETVAAAITTLSAGDLMAYIDCGGPPEDLVR 277 (397)
Q Consensus 198 ~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~is~~dl~~~~~~~~~~~~~ls~~Dl~~~~~~~~~~~~l~~ 277 (397)
++.++.+++++.+|+++|.+.++ +++||+|++|+++|+|| .+|++.++.......
T Consensus 2 ~~~~i~~~~~~~~~~~~~~~~~~--~~~~Vv~~~~~~~G~it-------------------~~dl~~~~~~~~~~~---- 56 (128)
T cd04632 2 DVITVREDDSVGKAINVLREHGI--SRLPVVDDNGKLTGIVT-------------------RHDIVDFVVRDRDKA---- 56 (128)
T ss_pred CceEeCCCCCHHHHHHHHHHcCC--CEEEEECCCCcEEEEEE-------------------HHHHHHHHhhhhhhc----
Confidence 56789999999999999999998 99999999999999954 555554221000000
Q ss_pred HHHHHhhhcchhhhhhhhccccCCCCCCCCCCCCCccchhhhccccCCCccccccchhhhhcCCccEEeCCCCcHHHHHH
Q 016003 278 VVKERLKDKGLEGMLEHFDMSSSLMPYLSTSSSSDEESTATSKLTRSGKHSRSMSYSARMVRRAEAIVCHPTSSLMAVMI 357 (397)
Q Consensus 278 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~~~~sl~~v~~ 357 (397)
.. +.... . .+. . .......+|..++++|.+++++.+++.
T Consensus 57 ----~~--~~~~~-----~--------------------~~~----~------~~~~~~~~~~~~~~~v~~~~~l~~~l~ 95 (128)
T cd04632 57 ----RT--GDRSG-----E--------------------KER----M------LDLPVYDAMSSPVITASPNDSVRDAVD 95 (128)
T ss_pred ----ch--hhhhh-----h--------------------hhh----h------ccCcHHHHhcCCCceECCCCcHHHHHH
Confidence 00 00000 0 000 0 001122356778999999999999999
Q ss_pred HHHHcCCcEEEEEc--CCCcEEEEEehHHHHHH
Q 016003 358 QAIAHRVTYVWVIE--DDCTLTGIVTFSDLLKV 388 (397)
Q Consensus 358 ~m~~~~i~rl~VVd--~~~~lvGvVt~~DIl~~ 388 (397)
.|.+++++.+||++ ++|+++|+||+.||+++
T Consensus 96 ~~~~~~~~~~~V~~~~~~~~~~Gvit~~di~~~ 128 (128)
T cd04632 96 RMLENDDSSVVVVTPDDDTKVVGILTKKDVLRA 128 (128)
T ss_pred HHHhCCCCeEeEeccCCCCcEEEEEEhHhhhcC
Confidence 99999999999995 46899999999999863
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener |
| >cd04593 CBS_pair_EriC_assoc_bac_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in bacteria and archaea | Back alignment and domain information |
|---|
Probab=99.38 E-value=4.9e-12 Score=104.67 Aligned_cols=112 Identities=19% Similarity=0.251 Sum_probs=88.2
Q ss_pred CeEEEeCCCcHHHHHHHHHhcCCCCCEEEEEcCCCcEEEeeccCcccCcchhHHHHHhhcChhhhhhhhccCCCCchhHH
Q 016003 198 DVVAVDYHSPASLALEAISRSLFDQTSVAVVDSDGFLIGEISPSTLGCCDETVAAAITTLSAGDLMAYIDCGGPPEDLVR 277 (397)
Q Consensus 198 ~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~is~~dl~~~~~~~~~~~~~ls~~Dl~~~~~~~~~~~~l~~ 277 (397)
++.++.+++++.+|++.|.+.+. +.+||+|++|+++|+ ++.+|++......
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~--~~~~V~d~~~~~~G~-------------------v~~~dl~~~~~~~-------- 52 (115)
T cd04593 2 PPPVLSATTPLREAAEQLIESKH--GSALVVDRDGGVVGI-------------------ITLPDLLRALEAD-------- 52 (115)
T ss_pred CCcEeCCCCCHHHHHHHHHhCCC--cEEEEEcCCCCEEEE-------------------EEHHHHHHHHhcc--------
Confidence 46788999999999999999888 999999999999999 5566665421100
Q ss_pred HHHHHhhhcchhhhhhhhccccCCCCCCCCCCCCCccchhhhccccCCCccccccchhhhhcCCccEEeCCCCcHHHHHH
Q 016003 278 VVKERLKDKGLEGMLEHFDMSSSLMPYLSTSSSSDEESTATSKLTRSGKHSRSMSYSARMVRRAEAIVCHPTSSLMAVMI 357 (397)
Q Consensus 278 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~~~~sl~~v~~ 357 (397)
..++ ... ....|..++++|.+++++.++++
T Consensus 53 ----------------------~~~~--------------------~~~--------~~~~~~~~~~~v~~~~~l~~~l~ 82 (115)
T cd04593 53 ----------------------EAGE--------------------PSA--------VDEVATPPLLTVHPDEPLAHALD 82 (115)
T ss_pred ----------------------cccc--------------------ccc--------HHHhccCCceEECCCCCHHHHHH
Confidence 0000 000 01235668899999999999999
Q ss_pred HHHHcCCcEEEEEcCC--CcEEEEEehHHHHHH
Q 016003 358 QAIAHRVTYVWVIEDD--CTLTGIVTFSDLLKV 388 (397)
Q Consensus 358 ~m~~~~i~rl~VVd~~--~~lvGvVt~~DIl~~ 388 (397)
+|.+++.+++||+|++ |+++|+||.+||+++
T Consensus 83 ~~~~~~~~~~~Vvd~~~~~~~~Gvit~~di~~~ 115 (115)
T cd04593 83 RMASRGLRQLPVVDRGNPGQVLGLLTRENVLLA 115 (115)
T ss_pred HHHHcCCceeeEEeCCCCCeEEEEEEhHHhhcC
Confidence 9999999999999987 799999999999864
|
These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS d |
| >COG3620 Predicted transcriptional regulator with C-terminal CBS domains [Transcription] | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.5e-12 Score=112.87 Aligned_cols=137 Identities=23% Similarity=0.293 Sum_probs=96.6
Q ss_pred cHHHHHHHHHhccCCCCCCccCCccccCCCCcCeEEEeCCCcHHHHHHHHHhcCCCCCEEEEEcCCCcEEEeeccCcccC
Q 016003 166 TQEDIIRFILSSISLFSPIPALSIDSLGIISTDVVAVDYHSPASLALEAISRSLFDQTSVAVVDSDGFLIGEISPSTLGC 245 (397)
Q Consensus 166 Tq~DIi~~l~~~~~~l~~l~~~ti~~L~~~~~~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~is~~dl~~ 245 (397)
|-..|+++|-++.+ ..+.++ .+|+.+++++.+++++.+|+++|.++++ |-+||+++ |++||-||
T Consensus 49 t~k~Il~aL~e~e~--~~ita~-----~iM~spvv~v~pdDsi~~vv~lM~~~g~--SQlPVi~~-~k~VGsIt------ 112 (187)
T COG3620 49 TVKRILEALEEAEK--TRITAK-----TIMHSPVVSVSPDDSISDVVNLMRDKGI--SQLPVIEE-DKVVGSIT------ 112 (187)
T ss_pred HHHHHHHHHHHhhc--ceEeHh-----hhccCCeeEECchhhHHHHHHHHHHcCC--ccCceeeC-Ceeeeeec------
Confidence 33456666655433 112222 3899999999999999999999999999 99999997 79999855
Q ss_pred cchhHHHHHhhcChhhhhhhhccCCCCchhHHHHHHHhhhcchhhhhhhhccccCCCCCCCCCCCCCccchhhhccccCC
Q 016003 246 CDETVAAAITTLSAGDLMAYIDCGGPPEDLVRVVKERLKDKGLEGMLEHFDMSSSLMPYLSTSSSSDEESTATSKLTRSG 325 (397)
Q Consensus 246 ~~~~~~~~~~~ls~~Dl~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (397)
++|+....-.+ .+++ ++.
T Consensus 113 -------------E~~iv~~~le~--~e~i-----------------------------------------------~~~ 130 (187)
T COG3620 113 -------------ENDIVRALLEG--MESI-----------------------------------------------RSL 130 (187)
T ss_pred -------------HHHHHHHHhcc--ccch-----------------------------------------------hhh
Confidence 45544311000 0000 011
Q ss_pred CccccccchhhhhcCCccEEeCCCCcHHHHHHHHHHcCCcEEEEEcCCCcEEEEEehHHHHHHHHH
Q 016003 326 KHSRSMSYSARMVRRAEAIVCHPTSSLMAVMIQAIAHRVTYVWVIEDDCTLTGIVTFSDLLKVFRK 391 (397)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~it~~~~~sl~~v~~~m~~~~i~rl~VVd~~~~lvGvVt~~DIl~~l~~ 391 (397)
..+.+|..+..+++|+.++..+-.++-.| .-+-|++ +|+++||||+.||++.+.+
T Consensus 131 --------~vr~vM~e~fP~Vs~~~~l~vI~~LL~~~--~AVlV~e-~G~~vGIITk~DI~k~~~~ 185 (187)
T COG3620 131 --------RVREVMGEPFPTVSPDESLNVISQLLEEH--PAVLVVE-NGKVVGIITKADIMKLLAG 185 (187)
T ss_pred --------hHHHHhcCCCCcCCCCCCHHHHHHHHhhC--CeEEEEe-CCceEEEEeHHHHHHHHhc
Confidence 12357888999999999998766666554 4577775 5899999999999998764
|
|
| >cd04590 CBS_pair_CorC_HlyC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the CorC_HlyC domain | Back alignment and domain information |
|---|
Probab=99.38 E-value=7.9e-12 Score=102.48 Aligned_cols=108 Identities=22% Similarity=0.255 Sum_probs=86.4
Q ss_pred CeEEEeCCCcHHHHHHHHHhcCCCCCEEEEEcCC-CcEEEeeccCcccCcchhHHHHHhhcChhhhhhhhccCCCCchhH
Q 016003 198 DVVAVDYHSPASLALEAISRSLFDQTSVAVVDSD-GFLIGEISPSTLGCCDETVAAAITTLSAGDLMAYIDCGGPPEDLV 276 (397)
Q Consensus 198 ~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~-g~lvG~is~~dl~~~~~~~~~~~~~ls~~Dl~~~~~~~~~~~~l~ 276 (397)
+++++.++.++.+|++.|.+.+. +.+||+|++ |+++|+ ++..|++.....
T Consensus 2 ~~~~i~~~~~i~~a~~~~~~~~~--~~~~v~~~~~~~~~G~-------------------v~~~~l~~~~~~-------- 52 (111)
T cd04590 2 DIVALDADDTLEEILELIAESGH--SRFPVYDGDLDNIIGV-------------------VHVKDLLRALAE-------- 52 (111)
T ss_pred ceEEEcCCCCHHHHHHHHhhCCC--ceEEEECCCCceEEEE-------------------EEHHHHHHHHHc--------
Confidence 57889999999999999999888 999999998 999999 556666542210
Q ss_pred HHHHHHhhhcchhhhhhhhccccCCCCCCCCCCCCCccchhhhccccCCCccccccchhhhhcCCccEEeCCCCcHHHHH
Q 016003 277 RVVKERLKDKGLEGMLEHFDMSSSLMPYLSTSSSSDEESTATSKLTRSGKHSRSMSYSARMVRRAEAIVCHPTSSLMAVM 356 (397)
Q Consensus 277 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~~~~sl~~v~ 356 (397)
.+. . .. ... +..++.++.+++++.+++
T Consensus 53 ------------------------~~~-------------------~-~~--------~~~-~~~~~~~v~~~~~l~~~~ 79 (111)
T cd04590 53 ------------------------GEE-------------------D-LD--------LRD-LLRPPLFVPESTPLDDLL 79 (111)
T ss_pred ------------------------CCC-------------------c-CC--------HHH-HhcCCeecCCCCcHHHHH
Confidence 000 0 00 001 124678999999999999
Q ss_pred HHHHHcCCcEEEEEcCCCcEEEEEehHHHHH
Q 016003 357 IQAIAHRVTYVWVIEDDCTLTGIVTFSDLLK 387 (397)
Q Consensus 357 ~~m~~~~i~rl~VVd~~~~lvGvVt~~DIl~ 387 (397)
+.|.+++.+++||+|++|+++|+||+.|+++
T Consensus 80 ~~~~~~~~~~~~Vv~~~~~~~Gvit~~di~~ 110 (111)
T cd04590 80 EEMRKERSHMAIVVDEYGGTAGLVTLEDILE 110 (111)
T ss_pred HHHHhcCCcEEEEEECCCCEEEEeEHHHhhc
Confidence 9999999999999999899999999999985
|
CorC_HlyC is a transporter associated domain. This small domain is found in Na+/H+ antiporters, in proteins involved in magnesium and cobalt efflux, and in association with some proteins of unknown function. The function of the CorC_HlyC domain is uncertain but it might be involved in modulating transport of ion substrates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, |
| >cd04582 CBS_pair_ABC_OpuCA_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA | Back alignment and domain information |
|---|
Probab=99.38 E-value=7.5e-12 Score=101.74 Aligned_cols=104 Identities=19% Similarity=0.233 Sum_probs=84.8
Q ss_pred CeEEEeCCCcHHHHHHHHHhcCCCCCEEEEEcCCCcEEEeeccCcccCcchhHHHHHhhcChhhhhhhhccCCCCchhHH
Q 016003 198 DVVAVDYHSPASLALEAISRSLFDQTSVAVVDSDGFLIGEISPSTLGCCDETVAAAITTLSAGDLMAYIDCGGPPEDLVR 277 (397)
Q Consensus 198 ~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~is~~dl~~~~~~~~~~~~~ls~~Dl~~~~~~~~~~~~l~~ 277 (397)
++.++.++.++.+|++.|.+.+. +.+||+|++|+++|++ +..|++....
T Consensus 2 ~~~~v~~~~~~~~a~~~~~~~~~--~~~~v~d~~g~~~Giv-------------------~~~dl~~~~~---------- 50 (106)
T cd04582 2 EPITVRPDDPLSDALGLMDDSDL--RALTVVDADGQPLGFV-------------------TRREAARASG---------- 50 (106)
T ss_pred CCcEecCCCcHHHHHHHHHhcCC--CEEEEECCCCCEEEEE-------------------eHHHHHHhcc----------
Confidence 56789999999999999998888 9999999889999994 4555543100
Q ss_pred HHHHHhhhcchhhhhhhhccccCCCCCCCCCCCCCccchhhhccccCCCccccccchhhhhcCCccEEeCCCCcHHHHHH
Q 016003 278 VVKERLKDKGLEGMLEHFDMSSSLMPYLSTSSSSDEESTATSKLTRSGKHSRSMSYSARMVRRAEAIVCHPTSSLMAVMI 357 (397)
Q Consensus 278 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~~~~sl~~v~~ 357 (397)
..+ ...|.....++.+++++.++++
T Consensus 51 --------~~~-----------------------------------------------~~~~~~~~~~~~~~~~~~~~~~ 75 (106)
T cd04582 51 --------GCC-----------------------------------------------GDHAEPFKVTVSVDDDLRIVLS 75 (106)
T ss_pred --------cch-----------------------------------------------hhhcccCCEEECCCCCHHHHHH
Confidence 000 0123446678999999999999
Q ss_pred HHHHcCCcEEEEEcCCCcEEEEEehHHHHH
Q 016003 358 QAIAHRVTYVWVIEDDCTLTGIVTFSDLLK 387 (397)
Q Consensus 358 ~m~~~~i~rl~VVd~~~~lvGvVt~~DIl~ 387 (397)
.|.+++++.+||+|++|+++|+||+.|+++
T Consensus 76 ~~~~~~~~~~~Vv~~~~~~~Gvi~~~~l~~ 105 (106)
T cd04582 76 RMFAHDMSWLPCVDEDGRYVGEVTQRSIAD 105 (106)
T ss_pred HHHHCCCCeeeEECCCCcEEEEEEHHHhhc
Confidence 999999999999999899999999999985
|
OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzi |
| >cd04621 CBS_pair_8 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=99.38 E-value=6.8e-12 Score=107.97 Aligned_cols=134 Identities=14% Similarity=0.195 Sum_probs=90.5
Q ss_pred CeEEEeCCCcHHHHHHHHHhcCCCCCEEEEEcCCCcEEEeeccCcccCcchhHHHHHhhcChhhhhhhhccCCCCchhHH
Q 016003 198 DVVAVDYHSPASLALEAISRSLFDQTSVAVVDSDGFLIGEISPSTLGCCDETVAAAITTLSAGDLMAYIDCGGPPEDLVR 277 (397)
Q Consensus 198 ~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~is~~dl~~~~~~~~~~~~~ls~~Dl~~~~~~~~~~~~l~~ 277 (397)
+++++++++++.+|++.|.+.+. +++||+|++|+++|+|+..|| +.+..... ...+.
T Consensus 2 ~~~~v~~~~~~~~a~~~~~~~~~--~~l~V~d~~~~~~Giv~~~dl-------------------~~~~~~~~-~~~~~- 58 (135)
T cd04621 2 DIATVHPEHSLLHVVDEMEKNGV--GRVIVVDDNGKPVGVITYRDL-------------------AFAEFEDN-ERGLP- 58 (135)
T ss_pred CceEeCCCCcHHHHHHHHHHcCC--CcceEECCCCCEEEEEeHHHH-------------------HHHhhccc-ccccc-
Confidence 57789999999999999999988 999999999999999664444 43221000 00000
Q ss_pred HHHHHhhhcchhhhhhhhccccCCCCCCCCCCCCCccchhhhccccCCCccccccchhhhhcCCccEEeCCCCcHHHHHH
Q 016003 278 VVKERLKDKGLEGMLEHFDMSSSLMPYLSTSSSSDEESTATSKLTRSGKHSRSMSYSARMVRRAEAIVCHPTSSLMAVMI 357 (397)
Q Consensus 278 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~~~~sl~~v~~ 357 (397)
+.. + .+...... +..........+...+|..++.++.+++++.+++.
T Consensus 59 ---------~~~-~--~~~~~~~~---------------------~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~~~~ 105 (135)
T cd04621 59 ---------KKS-I--KMKRKAGQ---------------------KRYRYVKEVPLVAEDIMTEEIITVSPNDDVVDAAK 105 (135)
T ss_pred ---------hhh-h--hhhhhccc---------------------ccccccccccccHHHhcCCCCeEECCCCCHHHHHH
Confidence 000 0 00000000 00000001112233467788999999999999999
Q ss_pred HHHHcCCcEEEEEcCCCcEEEEEehHHHHHH
Q 016003 358 QAIAHRVTYVWVIEDDCTLTGIVTFSDLLKV 388 (397)
Q Consensus 358 ~m~~~~i~rl~VVd~~~~lvGvVt~~DIl~~ 388 (397)
.|.+++.+++||+|+ |+++|+||.+||+++
T Consensus 106 ~~~~~~~~~l~Vv~~-~~~~Gvit~~di~~~ 135 (135)
T cd04621 106 LMLEANISGLPVVDN-DNIVGVITKTDICRE 135 (135)
T ss_pred HHHHcCCCEEEEEeC-CEEEEEEEHHHHhhC
Confidence 999999999999998 899999999999863
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera |
| >cd04803 CBS_pair_15 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=99.37 E-value=7.4e-12 Score=104.42 Aligned_cols=121 Identities=21% Similarity=0.303 Sum_probs=89.3
Q ss_pred CeEEEeCCCcHHHHHHHHHhcCCCCCEEEEEcCCCcEEEeeccCcccCcchhHHHHHhhcChhhhhhhhccCCCCchhHH
Q 016003 198 DVVAVDYHSPASLALEAISRSLFDQTSVAVVDSDGFLIGEISPSTLGCCDETVAAAITTLSAGDLMAYIDCGGPPEDLVR 277 (397)
Q Consensus 198 ~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~is~~dl~~~~~~~~~~~~~ls~~Dl~~~~~~~~~~~~l~~ 277 (397)
++.++.+++++.+|++.|.+.++ +.+||+|++|+++|++ +.+|++.+.......
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~--~~~~V~~~~~~~~G~v-------------------~~~~l~~~~~~~~~~----- 55 (122)
T cd04803 2 PVVTLSEDDSLADAEELMREHRI--RHLPVVNEDGKLVGLL-------------------TQRDLLRAALSSLSD----- 55 (122)
T ss_pred CCEEeCCCCcHHHHHHHHHHcCc--ccccEECCCCCEEEEE-------------------EHHHHHHHhcccccc-----
Confidence 46789999999999999999999 9999999989999995 455555422100000
Q ss_pred HHHHHhhhcchhhhhhhhccccCCCCCCCCCCCCCccchhhhccccCCCccccccchhhhhcCCccEEeCCCCcHHHHHH
Q 016003 278 VVKERLKDKGLEGMLEHFDMSSSLMPYLSTSSSSDEESTATSKLTRSGKHSRSMSYSARMVRRAEAIVCHPTSSLMAVMI 357 (397)
Q Consensus 278 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~~~~sl~~v~~ 357 (397)
..... . .+........++..++++|.+++++.++++
T Consensus 56 ---------~~~~~---~--------------------------------~~~~~~~v~~~~~~~~~~v~~~~~~~~~~~ 91 (122)
T cd04803 56 ---------NGEES---L--------------------------------TKERDVPVAEVMKTDVLTVTPDTPLREAAE 91 (122)
T ss_pred ---------ccccc---c--------------------------------ccccCcCHHHhhCCCCeEeCCCCcHHHHHH
Confidence 00000 0 000001112345678899999999999999
Q ss_pred HHHHcCCcEEEEEcCCCcEEEEEehHHHHHH
Q 016003 358 QAIAHRVTYVWVIEDDCTLTGIVTFSDLLKV 388 (397)
Q Consensus 358 ~m~~~~i~rl~VVd~~~~lvGvVt~~DIl~~ 388 (397)
.|.+++.+++||+|++|+++|+||..||+++
T Consensus 92 ~~~~~~~~~~~Vv~~~~~~~Gvit~~dl~~~ 122 (122)
T cd04803 92 IMVENKIGCLPVVDDKGTLVGIITRSDFLRL 122 (122)
T ss_pred HHHHcCCCeEEEEcCCCCEEEEEEHHHhhcC
Confidence 9999999999999998899999999999863
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener |
| >cd04623 CBS_pair_10 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=99.37 E-value=1e-11 Score=101.74 Aligned_cols=111 Identities=22% Similarity=0.295 Sum_probs=87.4
Q ss_pred CeEEEeCCCcHHHHHHHHHhcCCCCCEEEEEcCCCcEEEeeccCcccCcchhHHHHHhhcChhhhhhhhccCCCCchhHH
Q 016003 198 DVVAVDYHSPASLALEAISRSLFDQTSVAVVDSDGFLIGEISPSTLGCCDETVAAAITTLSAGDLMAYIDCGGPPEDLVR 277 (397)
Q Consensus 198 ~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~is~~dl~~~~~~~~~~~~~ls~~Dl~~~~~~~~~~~~l~~ 277 (397)
++++++++.++.++++.|.+++. +.+||+|++|+++|++ +..|++..+...
T Consensus 2 ~~~~i~~~~~~~~~~~~~~~~~~--~~~~V~~~~~~~~Giv-------------------~~~~l~~~~~~~-------- 52 (113)
T cd04623 2 DVITVRPDATVAEAAKLMAEKNI--GAVVVVDDGGRLVGIF-------------------SERDIVRKVALR-------- 52 (113)
T ss_pred CCEEECCCCcHHHHHHHHHHcCC--CeEEEECCCCCEEEEE-------------------ehHHHHHHHhhc--------
Confidence 57789999999999999999888 9999999989999994 566665421100
Q ss_pred HHHHHhhhcchhhhhhhhccccCCCCCCCCCCCCCccchhhhccccCCCccccccchhhhhcCCccEEeCCCCcHHHHHH
Q 016003 278 VVKERLKDKGLEGMLEHFDMSSSLMPYLSTSSSSDEESTATSKLTRSGKHSRSMSYSARMVRRAEAIVCHPTSSLMAVMI 357 (397)
Q Consensus 278 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~~~~sl~~v~~ 357 (397)
.. . .. .....+.|..++.++.+++++.++++
T Consensus 53 -----------------------~~--------------~------~~------~~~~~~~~~~~~~~v~~~~~~~~~l~ 83 (113)
T cd04623 53 -----------------------GA--------------S------AL------DTPVSEIMTRNVITVTPDDTVDEAMA 83 (113)
T ss_pred -----------------------CC--------------C------cc------ccCHHHhcCCCcEEECCCCcHHHHHH
Confidence 00 0 00 00012345668899999999999999
Q ss_pred HHHHcCCcEEEEEcCCCcEEEEEehHHHHH
Q 016003 358 QAIAHRVTYVWVIEDDCTLTGIVTFSDLLK 387 (397)
Q Consensus 358 ~m~~~~i~rl~VVd~~~~lvGvVt~~DIl~ 387 (397)
.|.+++.+++||+|+ |+++|+||..||++
T Consensus 84 ~~~~~~~~~~~Vv~~-~~~~Gvit~~di~~ 112 (113)
T cd04623 84 LMTERRFRHLPVVDG-GKLVGIVSIGDVVK 112 (113)
T ss_pred HHHHcCCCEeEEEeC-CEEEEEEEHHHhhc
Confidence 999999999999998 89999999999986
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener |
| >cd04607 CBS_pair_NTP_transferase_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain associated with the NTP (Nucleotidyl transferase) domain downstream | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.3e-11 Score=101.86 Aligned_cols=109 Identities=22% Similarity=0.328 Sum_probs=85.7
Q ss_pred eEEEeCCCcHHHHHHHHHhcCCCCCEEEEEcCCCcEEEeeccCcccCcchhHHHHHhhcChhhhhhhhccCCCCchhHHH
Q 016003 199 VVAVDYHSPASLALEAISRSLFDQTSVAVVDSDGFLIGEISPSTLGCCDETVAAAITTLSAGDLMAYIDCGGPPEDLVRV 278 (397)
Q Consensus 199 v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~is~~dl~~~~~~~~~~~~~ls~~Dl~~~~~~~~~~~~l~~~ 278 (397)
.+++.+++++.+|++.|.+.+. ..++|+|++|+++|++ +.+|++..+...
T Consensus 4 ~~~v~~~~~~~~~~~~~~~~~~--~~~~v~d~~~~~~G~v-------------------~~~dl~~~~~~~--------- 53 (113)
T cd04607 4 QLLVSPDASILDALRKIDKNAL--RIVLVVDENGRLLGTV-------------------TDGDIRRALLKG--------- 53 (113)
T ss_pred ceEECCCCCHHHHHHHHHhcCc--CEEEEECCCCCEEEEE-------------------EcHHHHHHHhcC---------
Confidence 5678999999999999998888 9999999999999995 455554311000
Q ss_pred HHHHhhhcchhhhhhhhccccCCCCCCCCCCCCCccchhhhccccCCCccccccchhhhhcCCccEEeCCCCcHHHHHHH
Q 016003 279 VKERLKDKGLEGMLEHFDMSSSLMPYLSTSSSSDEESTATSKLTRSGKHSRSMSYSARMVRRAEAIVCHPTSSLMAVMIQ 358 (397)
Q Consensus 279 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~~~~sl~~v~~~ 358 (397)
. . . ... ...+|..++.++.+++++.+++++
T Consensus 54 ---------~-------~-----~---------------------~~~--------v~~~~~~~~~~v~~~~~l~~~~~~ 83 (113)
T cd04607 54 ---------L-------S-----L---------------------DDP--------VSEVMNRNPITAKVGSSREEILAL 83 (113)
T ss_pred ---------C-------C-----c---------------------CCC--------HHHhhcCCCEEEcCCCCHHHHHHH
Confidence 0 0 0 000 112356678899999999999999
Q ss_pred HHHcCCcEEEEEcCCCcEEEEEehHHHHH
Q 016003 359 AIAHRVTYVWVIEDDCTLTGIVTFSDLLK 387 (397)
Q Consensus 359 m~~~~i~rl~VVd~~~~lvGvVt~~DIl~ 387 (397)
|.+++.+++||+|++|+++|+||.+||+.
T Consensus 84 ~~~~~~~~~~Vv~~~~~~~Gvit~~di~~ 112 (113)
T cd04607 84 MRERSIRHLPILDEEGRVVGLATLDDLLS 112 (113)
T ss_pred HHHCCCCEEEEECCCCCEEEEEEhHHhcc
Confidence 99999999999998899999999999974
|
CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. |
| >cd04639 CBS_pair_26 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=99.36 E-value=9e-12 Score=102.15 Aligned_cols=109 Identities=24% Similarity=0.300 Sum_probs=86.8
Q ss_pred CeEEEeCCCcHHHHHHHHHhcCCCCCEEEEEcCCCcEEEeeccCcccCcchhHHHHHhhcChhhhhhhhccCCCCchhHH
Q 016003 198 DVVAVDYHSPASLALEAISRSLFDQTSVAVVDSDGFLIGEISPSTLGCCDETVAAAITTLSAGDLMAYIDCGGPPEDLVR 277 (397)
Q Consensus 198 ~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~is~~dl~~~~~~~~~~~~~ls~~Dl~~~~~~~~~~~~l~~ 277 (397)
+..++.+++++.+|++.|.+.+. +.+||+|++|+++|+| +..|+...+...
T Consensus 2 ~~~~v~~~~~i~e~~~~~~~~~~--~~~~V~~~~~~~~G~v-------------------~~~~l~~~~~~~-------- 52 (111)
T cd04639 2 HFETLSPADTLDDAADALLATTQ--HEFPVVDGDGHLVGLL-------------------TRDDLIRALAEG-------- 52 (111)
T ss_pred CceEcCCCCcHHHHHHHHHHcCC--CcceEECCCCcEEEEe-------------------eHHHHHHHHHhc--------
Confidence 46789999999999999988888 9999999989999994 556655422100
Q ss_pred HHHHHhhhcchhhhhhhhccccCCCCCCCCCCCCCccchhhhccccCCCccccccchhhhhcCCccEEeCCCCcHHHHHH
Q 016003 278 VVKERLKDKGLEGMLEHFDMSSSLMPYLSTSSSSDEESTATSKLTRSGKHSRSMSYSARMVRRAEAIVCHPTSSLMAVMI 357 (397)
Q Consensus 278 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~~~~sl~~v~~ 357 (397)
.+ ... ...+|..+++++.+++++.++++
T Consensus 53 ------------------------~~--------------------~~~--------v~~~~~~~~~~i~~~~~~~~~~~ 80 (111)
T cd04639 53 ------------------------GP--------------------DAP--------VRGVMRRDFPTVSPSATLDAVLR 80 (111)
T ss_pred ------------------------CC--------------------CCc--------HHHHhcCCCcEECCCCcHHHHHH
Confidence 00 000 01235568899999999999999
Q ss_pred HHHHcCCcEEEEEcCCCcEEEEEehHHHHH
Q 016003 358 QAIAHRVTYVWVIEDDCTLTGIVTFSDLLK 387 (397)
Q Consensus 358 ~m~~~~i~rl~VVd~~~~lvGvVt~~DIl~ 387 (397)
.|.+++.+++||+|++|+++|+||..||.+
T Consensus 81 ~~~~~~~~~~~Vv~~~~~~~G~it~~dl~~ 110 (111)
T cd04639 81 LMQQGGAPAVPVVDGSGRLVGLVTLENVGE 110 (111)
T ss_pred HHHhcCCceeeEEcCCCCEEEEEEHHHhhc
Confidence 999999999999998889999999999975
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener |
| >cd04801 CBS_pair_M50_like This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the metalloprotease peptidase M50 | Back alignment and domain information |
|---|
Probab=99.36 E-value=5.1e-12 Score=104.37 Aligned_cols=110 Identities=24% Similarity=0.218 Sum_probs=84.0
Q ss_pred cCeEEEeCCCcHHHHHHHHHhcC-CCCCEEEEEcCCCcEEEeeccCcccCcchhHHHHHhhcChhhhhhhhccCCCCchh
Q 016003 197 TDVVAVDYHSPASLALEAISRSL-FDQTSVAVVDSDGFLIGEISPSTLGCCDETVAAAITTLSAGDLMAYIDCGGPPEDL 275 (397)
Q Consensus 197 ~~v~tv~~~~~~~~a~~~m~~~~-i~~s~vpVVd~~g~lvG~is~~dl~~~~~~~~~~~~~ls~~Dl~~~~~~~~~~~~l 275 (397)
+++.++++++++.+|++.|.+++ . +.+||+|++|+++|+|+ .+|++......
T Consensus 1 ~~~~~~~~~~~l~~~~~~~~~~~~~--~~~~V~d~~~~~~G~v~-------------------~~dl~~~~~~~------ 53 (114)
T cd04801 1 RDFPTVPAHLTLREFVREYVLGSNQ--RRFVVVDNEGRYVGIIS-------------------LADLRAIPTSQ------ 53 (114)
T ss_pred CCcceeCCCCCHHHHHHHHhccCCc--eeEEEEcCCCcEEEEEE-------------------HHHHHHHHHhh------
Confidence 35778999999999999997765 7 99999999999999954 55555421000
Q ss_pred HHHHHHHhhhcchhhhhhhhccccCCCCCCCCCCCCCccchhhhccccCCCccccccchhhhhcC--CccEEeCCCCcHH
Q 016003 276 VRVVKERLKDKGLEGMLEHFDMSSSLMPYLSTSSSSDEESTATSKLTRSGKHSRSMSYSARMVRR--AEAIVCHPTSSLM 353 (397)
Q Consensus 276 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~it~~~~~sl~ 353 (397)
+ .. ... ..+|. .++.++.+++++.
T Consensus 54 ------~-------------~~---------------------------~~v--------~~~~~~~~~~~~v~~~~~l~ 79 (114)
T cd04801 54 ------W-------------AQ---------------------------TTV--------IQVMTPAAKLVTVLSEESLA 79 (114)
T ss_pred ------c-------------cc---------------------------cch--------hhhhcccccceEECCCCcHH
Confidence 0 00 000 01122 2467999999999
Q ss_pred HHHHHHHHcCCcEEEEEcCCCcEEEEEehHHHHH
Q 016003 354 AVMIQAIAHRVTYVWVIEDDCTLTGIVTFSDLLK 387 (397)
Q Consensus 354 ~v~~~m~~~~i~rl~VVd~~~~lvGvVt~~DIl~ 387 (397)
++++.|.+++.+++||+|++|+++|+||..||++
T Consensus 80 ~a~~~~~~~~~~~l~Vv~~~~~~~Gvl~~~di~~ 113 (114)
T cd04801 80 EVLKLLEEQGLDELAVVEDSGQVIGLITEADLLR 113 (114)
T ss_pred HHHHHHHHCCCCeeEEEcCCCcEEEEEeccceec
Confidence 9999999999999999998889999999999975
|
CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. |
| >cd04643 CBS_pair_30 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=99.36 E-value=8.3e-12 Score=103.05 Aligned_cols=115 Identities=18% Similarity=0.271 Sum_probs=86.0
Q ss_pred CeEEEeCCCcHHHHHHHHHhcCCCCCEEEEEcCCCcEEEeeccCcccCcchhHHHHHhhcChhhhhhhhccCCCCchhHH
Q 016003 198 DVVAVDYHSPASLALEAISRSLFDQTSVAVVDSDGFLIGEISPSTLGCCDETVAAAITTLSAGDLMAYIDCGGPPEDLVR 277 (397)
Q Consensus 198 ~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~is~~dl~~~~~~~~~~~~~ls~~Dl~~~~~~~~~~~~l~~ 277 (397)
+++++++++++.+|++.|...++ +.+||+|++|+++|+ ++.+|++...... +
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~--~~~~V~d~~~~~~Gi-------------------v~~~dl~~~~~~~-~------ 53 (116)
T cd04643 2 EVAYVQDTNTLRHALLVLTKHGY--SAIPVLDKEGKYVGT-------------------ISLTDILWKLKGL-E------ 53 (116)
T ss_pred CcEEECCCCcHHHHHHHHHHCCC--ceeeeECCCCcEEEE-------------------EeHHHHHHHhhcc-C------
Confidence 57899999999999999999988 999999998999999 4566665422100 0
Q ss_pred HHHHHhhhcchhhhhhhhccccCCCCCCCCCCCCCccchhhhccccCCCccccccchhhhhcCCccEEeCCCCcHHHHHH
Q 016003 278 VVKERLKDKGLEGMLEHFDMSSSLMPYLSTSSSSDEESTATSKLTRSGKHSRSMSYSARMVRRAEAIVCHPTSSLMAVMI 357 (397)
Q Consensus 278 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~~~~sl~~v~~ 357 (397)
..... .+. . ......|..++.++.+++++.+++.
T Consensus 54 ----------~~~~~-~~~---------------------------~--------~~v~~~~~~~~~~v~~~~~l~~a~~ 87 (116)
T cd04643 54 ----------NLDLE-RLV---------------------------D--------LKVIDVMNTDVPVIIDDADIEEILH 87 (116)
T ss_pred ----------chhHH-HHh---------------------------C--------CcHHHHhcCCCceecCCCCHHHHHH
Confidence 00000 000 0 0011245668899999999999999
Q ss_pred HHHHcCCcEEEEEcCCCcEEEEEehHHHHHH
Q 016003 358 QAIAHRVTYVWVIEDDCTLTGIVTFSDLLKV 388 (397)
Q Consensus 358 ~m~~~~i~rl~VVd~~~~lvGvVt~~DIl~~ 388 (397)
.|.+++ .+||+|++|+++|+||..||+++
T Consensus 88 ~~~~~~--~~~Vv~~~~~~~Gvit~~dil~~ 116 (116)
T cd04643 88 LLIDQP--FLPVVDDDGIFIGIITRREILKA 116 (116)
T ss_pred HHhcCC--ceeEEeCCCeEEEEEEHHHhhcC
Confidence 998865 59999998999999999999874
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener |
| >cd04626 CBS_pair_13 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=99.35 E-value=1.1e-11 Score=101.81 Aligned_cols=109 Identities=15% Similarity=0.152 Sum_probs=86.2
Q ss_pred CeEEEeCCCcHHHHHHHHHhcCCCCCEEEEEcCCCcEEEeeccCcccCcchhHHHHHhhcChhhhhhhhccCCCCchhHH
Q 016003 198 DVVAVDYHSPASLALEAISRSLFDQTSVAVVDSDGFLIGEISPSTLGCCDETVAAAITTLSAGDLMAYIDCGGPPEDLVR 277 (397)
Q Consensus 198 ~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~is~~dl~~~~~~~~~~~~~ls~~Dl~~~~~~~~~~~~l~~ 277 (397)
++.+++++.++.+|++.|.+.++ +.+||+|++|+++|++ +..|++.+....
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~--~~~~v~d~~~~~~G~v-------------------~~~dl~~~~~~~-------- 52 (111)
T cd04626 2 DFPTIDEDASIREALHEMLKYNT--NEIIVKDNEEKLKGVV-------------------TFTDILDLDLFE-------- 52 (111)
T ss_pred CceEECCCccHHHHHHHHHHhCC--CeEEEEcCCCCEEEEE-------------------ehHHhHHHHhhc--------
Confidence 57789999999999999999988 9999999999999994 455554321000
Q ss_pred HHHHHhhhcchhhhhhhhccccCCCCCCCCCCCCCccchhhhccccCCCccccccchhhhhcCCccEEeCCCCcHHHHHH
Q 016003 278 VVKERLKDKGLEGMLEHFDMSSSLMPYLSTSSSSDEESTATSKLTRSGKHSRSMSYSARMVRRAEAIVCHPTSSLMAVMI 357 (397)
Q Consensus 278 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~~~~sl~~v~~ 357 (397)
. . . . .+....|..+++++.+++++.+++.
T Consensus 53 ----~------~------~---------------------------~--------~~v~~~~~~~~~~v~~~~~l~~~~~ 81 (111)
T cd04626 53 ----S------F------L---------------------------E--------KKVFNIVSQDVFYVNEEDTIDEALD 81 (111)
T ss_pred ----c------c------c---------------------------c--------CcHHHHhcCCcEEEcCCCcHHHHHH
Confidence 0 0 0 0 0011235668899999999999999
Q ss_pred HHHHcCCcEEEEEcCCCcEEEEEehHHHHH
Q 016003 358 QAIAHRVTYVWVIEDDCTLTGIVTFSDLLK 387 (397)
Q Consensus 358 ~m~~~~i~rl~VVd~~~~lvGvVt~~DIl~ 387 (397)
.|.+++.+++||+|+ |+++|+||+.||+.
T Consensus 82 ~~~~~~~~~~~Vv~~-~~~~G~it~~di~~ 110 (111)
T cd04626 82 IMREKQIGRLPVVDD-NKLIGVVRTKDILD 110 (111)
T ss_pred HHHHcCCCeeeEeEC-CEEEEEEEhHHhcc
Confidence 999999999999998 89999999999974
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener |
| >cd04583 CBS_pair_ABC_OpuCA_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA | Back alignment and domain information |
|---|
Probab=99.35 E-value=1.4e-11 Score=100.31 Aligned_cols=106 Identities=23% Similarity=0.286 Sum_probs=86.3
Q ss_pred CeEEEeCCCcHHHHHHHHHhcCCCCCEEEEEcCCCcEEEeeccCcccCcchhHHHHHhhcChhhhhhhhccCCCCchhHH
Q 016003 198 DVVAVDYHSPASLALEAISRSLFDQTSVAVVDSDGFLIGEISPSTLGCCDETVAAAITTLSAGDLMAYIDCGGPPEDLVR 277 (397)
Q Consensus 198 ~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~is~~dl~~~~~~~~~~~~~ls~~Dl~~~~~~~~~~~~l~~ 277 (397)
++.++.++.++.+|++.|.+.++ ..+||+|++|+++|++ +..|++.....
T Consensus 3 ~~~~v~~~~~~~~~~~~~~~~~~--~~~~v~d~~~~~~G~v-------------------~~~dl~~~~~~--------- 52 (109)
T cd04583 3 NPVTITPDRTLAEAIKLMRDKKV--DSLLVVDKDNKLLGIV-------------------SLESLEQAYKE--------- 52 (109)
T ss_pred CCEEECCCCCHHHHHHHHHHCCC--ceEEEEcCCCcEEEEE-------------------EHHHHHHHhhc---------
Confidence 46789999999999999998888 9999999989999994 45665541100
Q ss_pred HHHHHhhhcchhhhhhhhccccCCCCCCCCCCCCCccchhhhccccCCCccccccchhhhhcCCccEEeCCCCcHHHHHH
Q 016003 278 VVKERLKDKGLEGMLEHFDMSSSLMPYLSTSSSSDEESTATSKLTRSGKHSRSMSYSARMVRRAEAIVCHPTSSLMAVMI 357 (397)
Q Consensus 278 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~~~~sl~~v~~ 357 (397)
.. .+ ...|...+.++++++++.++++
T Consensus 53 -----------------------~~-----------------------~v--------~~~~~~~~~~v~~~~~~~~~~~ 78 (109)
T cd04583 53 -----------------------AK-----------------------SL--------EDIMLEDVFTVQPDASLRDVLG 78 (109)
T ss_pred -----------------------CC-----------------------cH--------hHhhcCCceEECCCCcHHHHHH
Confidence 00 00 0124557789999999999999
Q ss_pred HHHHcCCcEEEEEcCCCcEEEEEehHHHHH
Q 016003 358 QAIAHRVTYVWVIEDDCTLTGIVTFSDLLK 387 (397)
Q Consensus 358 ~m~~~~i~rl~VVd~~~~lvGvVt~~DIl~ 387 (397)
.|.+++.+++||+|++|+++|+||..|+++
T Consensus 79 ~~~~~~~~~~~vv~~~g~~~Gvit~~~l~~ 108 (109)
T cd04583 79 LVLKRGPKYVPVVDEDGKLVGLITRSSLVD 108 (109)
T ss_pred HHHHcCCceeeEECCCCeEEEEEehHHhhc
Confidence 999999999999999899999999999985
|
OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyz |
| >cd04635 CBS_pair_22 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.1e-11 Score=103.27 Aligned_cols=122 Identities=22% Similarity=0.277 Sum_probs=89.3
Q ss_pred cCeEEEeCCCcHHHHHHHHHhcCCCCCEEEEEcCCCcEEEeeccCcccCcchhHHHHHhhcChhhhhhhhccCCCCchhH
Q 016003 197 TDVVAVDYHSPASLALEAISRSLFDQTSVAVVDSDGFLIGEISPSTLGCCDETVAAAITTLSAGDLMAYIDCGGPPEDLV 276 (397)
Q Consensus 197 ~~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~is~~dl~~~~~~~~~~~~~ls~~Dl~~~~~~~~~~~~l~ 276 (397)
++++++++++++.+|++.|...+. +.+||+|++|+++|+++..||.++. +.. ...+..
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~V~d~~~~~~G~v~~~~l~~~~-----------------~~~--~~~~~~- 58 (122)
T cd04635 1 REPVTCTPDDPVSKVWDLMLESGF--TGLPVVQKAGELIGIITRRDIIRAG-----------------SVR--TSVEDQ- 58 (122)
T ss_pred CCCEEeCCCCcHHHHHHHHHHcCC--CcccEECCCCcEEEEEEcHHHHhhc-----------------ccc--ccccch-
Confidence 357889999999999999998888 9999999999999996655544310 000 000000
Q ss_pred HHHHHHhhhcchhhhhhhhccccCCCCCCCCCCCCCccchhhhccccCCCccccccchhhhhcCCccEEeCCCCcHHHHH
Q 016003 277 RVVKERLKDKGLEGMLEHFDMSSSLMPYLSTSSSSDEESTATSKLTRSGKHSRSMSYSARMVRRAEAIVCHPTSSLMAVM 356 (397)
Q Consensus 277 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~~~~sl~~v~ 356 (397)
.. . . ... ..+..++|..++++|.+++++.+++
T Consensus 59 -----~~-----~------~--------------------------~~~------~~~~~~~~~~~~~~v~~~~~l~~~~ 90 (122)
T cd04635 59 -----QR-----T------Q--------------------------TKA------SPTVEKIMSTPVYSVTPDDSIATAV 90 (122)
T ss_pred -----hh-----h------h--------------------------hhc------cCcHHHHhcCCCeeECCCCCHHHHH
Confidence 00 0 0 000 0011234567889999999999999
Q ss_pred HHHHHcCCcEEEEEcCCCcEEEEEehHHHHHH
Q 016003 357 IQAIAHRVTYVWVIEDDCTLTGIVTFSDLLKV 388 (397)
Q Consensus 357 ~~m~~~~i~rl~VVd~~~~lvGvVt~~DIl~~ 388 (397)
+.|.+++.+++||+|++|+++|++|..|++++
T Consensus 91 ~~~~~~~~~~~~Vvd~~g~~~Gvit~~dl~~~ 122 (122)
T cd04635 91 ELMLEHDIGRLPVVNEKDQLVGIVDRHDVLKA 122 (122)
T ss_pred HHHHHcCCCeeeEEcCCCcEEEEEEhHHhhcC
Confidence 99999999999999998999999999999863
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener |
| >cd04641 CBS_pair_28 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.4e-11 Score=102.99 Aligned_cols=116 Identities=22% Similarity=0.186 Sum_probs=88.5
Q ss_pred CeEEEeCChhHHHHHHHHhhCCCceEEEEccCCCCCCCCCCCCCCCeEEEEEehhHHHHHHhhcCCCCChhhhhcCChhh
Q 016003 19 ALRALSISAAIADALSALKNSDESFISVWDCNCCSNHRKLGDACECQCVGKVCMVDVICYLCKDSNSLSPSLALKQPVSV 98 (397)
Q Consensus 19 ~li~v~~~~tv~~Al~~L~~~~I~s~PV~d~~~~~~~~~~~~~~~~~~vGiv~~~Dil~~l~~~~~l~~~~~~~~~~V~~ 98 (397)
+++++++++++.+|++.|.++++.++||++. +++++|+++..|++.++.+... .....++..
T Consensus 2 ~~~~i~~~~~l~~a~~~~~~~~~~~~pVv~~-------------~~~~~Giv~~~dl~~~~~~~~~-----~~~~~~~~~ 63 (120)
T cd04641 2 NIATARPDTPLIDVLDMLVERRVSALPIVDE-------------NGKVVDVYSRFDVINLAKEGAY-----NNLDLTVGE 63 (120)
T ss_pred CcEEEcCCCCHHHHHHHHHHcCCCeeeEECC-------------CCeEEEEEeHHHHHHHHhcCcc-----ccccCCHHH
Confidence 6789999999999999999999999999986 3689999999999987643211 011122332
Q ss_pred hc-cCC-CCCceEEeCCCCCHHHHHHHHh-cCCceEEEeccCcchhhhhhhcccccccccCCCCceeeeecHHHHHHH
Q 016003 99 LL-PQL-LPPLVMHVEPSCSLLEAMDLML-GGAQNLVVPIKNRLSIKRKQQQKLSSSSLTNHNGREFCWLTQEDIIRF 173 (397)
Q Consensus 99 lm-~~~-~~~~~~~V~~~~sL~~al~~m~-~g~~r~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IITq~DIi~~ 173 (397)
.+ ... ...++..+.+++++.++++.|. +++++++|++++ ++.+|+||+.|+++|
T Consensus 64 ~~~~~~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~---------------------~~~~Givt~~di~~~ 120 (120)
T cd04641 64 ALERRSQDFEGVRTCSPDDCLRTIFDLIVKARVHRLVVVDEN---------------------KRVEGIISLSDILQF 120 (120)
T ss_pred HHhhcccCCCCCeEEcCCCcHHHHHHHHHhcCccEEEEECCC---------------------CCEEEEEEHHHhhcC
Confidence 21 110 1123789999999999999999 799999987532 357899999999875
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener |
| >cd04586 CBS_pair_BON_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the BON (bacterial OsmY and nodulation domain) domain | Back alignment and domain information |
|---|
Probab=99.34 E-value=8.6e-12 Score=106.56 Aligned_cols=134 Identities=28% Similarity=0.311 Sum_probs=89.4
Q ss_pred cCeEEEeCCCcHHHHHHHHHhcCCCCCEEEEEcCCCcEEEeeccCcccCcchhHHHHHhhcChhhhhhhhccCCCCchhH
Q 016003 197 TDVVAVDYHSPASLALEAISRSLFDQTSVAVVDSDGFLIGEISPSTLGCCDETVAAAITTLSAGDLMAYIDCGGPPEDLV 276 (397)
Q Consensus 197 ~~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~is~~dl~~~~~~~~~~~~~ls~~Dl~~~~~~~~~~~~l~ 276 (397)
+++.++.++.++.+|++.|.+.++ ..+||+|++|+++|+|+.. |+......... ...
T Consensus 2 ~~~~~v~~~~~~~~~~~~~~~~~~--~~~~Vvd~~~~~~Gvi~~~-------------------dl~~~~~~~~~-~~~- 58 (135)
T cd04586 2 TDVVTVSPETSVAEAARLMLDNHI--SGLPVVDDDGRLVGIVSEG-------------------DLLRRAELGTE-RRR- 58 (135)
T ss_pred CCCEEeCCCCCHHHHHHHHHHcCC--CCceEECCCCCEEEEeeHH-------------------HHHHHhcccCc-chh-
Confidence 568899999999999999999988 9999999999999996544 44332110000 000
Q ss_pred HHHHHHhhhcchhhhhhhhccccCCCCCCCCCCCCCccchhhhccccCCCccccccchhhhhcCCccEEeCCCCcHHHHH
Q 016003 277 RVVKERLKDKGLEGMLEHFDMSSSLMPYLSTSSSSDEESTATSKLTRSGKHSRSMSYSARMVRRAEAIVCHPTSSLMAVM 356 (397)
Q Consensus 277 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~~~~sl~~v~ 356 (397)
..++. ..... ......+. ... ......+|..+++++.+++++.+++
T Consensus 59 ---~~~~~---------~~~~~--------------~~~~~~~~--~~~------~~~v~~~~~~~~~~v~~~~~~~~~~ 104 (135)
T cd04586 59 ---ARWLD---------LLAGA--------------EELAAAFV--RSH------GRKVADVMTRPVVTVGEDTPLAEVA 104 (135)
T ss_pred ---hhHHH---------Hhcch--------------HHHHHHHH--Hhc------CCCHHHHhCCCceEeCCCCcHHHHH
Confidence 00000 00000 00000000 000 0112234667899999999999999
Q ss_pred HHHHHcCCcEEEEEcCCCcEEEEEehHHHHHH
Q 016003 357 IQAIAHRVTYVWVIEDDCTLTGIVTFSDLLKV 388 (397)
Q Consensus 357 ~~m~~~~i~rl~VVd~~~~lvGvVt~~DIl~~ 388 (397)
..|.+++.+++||+| +|+++|+||+.||+++
T Consensus 105 ~~~~~~~~~~l~Vvd-~g~~~Gvit~~di~~~ 135 (135)
T cd04586 105 ELMEEHRIKRVPVVR-GGRLVGIVSRADLLRA 135 (135)
T ss_pred HHHHHcCCCccCEec-CCEEEEEEEhHhhhcC
Confidence 999999999999999 7999999999999863
|
BON is a putative phospholipid-binding domain found in a family of osmotic shock protection proteins. It is also found in some secretins and a group of potential haemolysins. Its likely function is attachment to phospholipid membranes. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. |
| >PRK01862 putative voltage-gated ClC-type chloride channel ClcB; Provisional | Back alignment and domain information |
|---|
Probab=99.33 E-value=7.8e-12 Score=132.72 Aligned_cols=126 Identities=17% Similarity=0.171 Sum_probs=99.4
Q ss_pred cCCccccCCCCcCeEEEeCCCcHHHHHHHHHhcCCCCCEEEEEcCCCcEEEeeccCcccCcchhHHHHHhhcChhhhhhh
Q 016003 186 ALSIDSLGIISTDVVAVDYHSPASLALEAISRSLFDQTSVAVVDSDGFLIGEISPSTLGCCDETVAAAITTLSAGDLMAY 265 (397)
Q Consensus 186 ~~ti~~L~~~~~~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~is~~dl~~~~~~~~~~~~~ls~~Dl~~~ 265 (397)
..++++ +|++++.++++++++.++++.|.+++. +.+||+|++|+++|+| +.+|+++.
T Consensus 446 ~~~V~d--im~~~~~~v~~~~tl~ea~~~l~~~~~--~~~~VvD~~g~lvGiV-------------------t~~dL~~~ 502 (574)
T PRK01862 446 TTQMRE--LIQPAQTVVPPTASVADMTRVFLEYPV--KYLYVVDDDGRFRGAV-------------------ALKDITSD 502 (574)
T ss_pred hCcHHH--HhcCCCceeCCCCCHHHHHHHHHhCCC--ceEEEEcCCCeEEEEE-------------------EHHHHHHH
Confidence 445555 788999999999999999999999988 9999999999999995 45565541
Q ss_pred hccCCCCchhHHHHHHHhhhcchhhhhhhhccccCCCCCCCCCCCCCccchhhhccccCCCccccccchhhhhcCCccEE
Q 016003 266 IDCGGPPEDLVRVVKERLKDKGLEGMLEHFDMSSSLMPYLSTSSSSDEESTATSKLTRSGKHSRSMSYSARMVRRAEAIV 345 (397)
Q Consensus 266 ~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it 345 (397)
... . ... + .....++|..++.+
T Consensus 503 l~~----------------------------~--~~~--------------~--------------~~~v~dim~~~~~~ 524 (574)
T PRK01862 503 LLD----------------------------K--RDT--------------T--------------DKTAADYAHTPFPL 524 (574)
T ss_pred hhc----------------------------c--ccc--------------c--------------cchHHHhccCCCee
Confidence 100 0 000 0 00012356778899
Q ss_pred eCCCCcHHHHHHHHHHcCCcEEEEEcCC--CcEEEEEehHHHHHHHHHH
Q 016003 346 CHPTSSLMAVMIQAIAHRVTYVWVIEDD--CTLTGIVTFSDLLKVFRKH 392 (397)
Q Consensus 346 ~~~~~sl~~v~~~m~~~~i~rl~VVd~~--~~lvGvVt~~DIl~~l~~~ 392 (397)
+++++++.+++++|.+++++++||||++ ++++|+||+.||++++.+.
T Consensus 525 v~~d~~L~~al~~m~~~~~~~lpVVd~~~~~~liGvIt~~DIl~~l~~~ 573 (574)
T PRK01862 525 LTPDMPLGDALEHFMAFQGERLPVVESEASPTLAGVVYKTSLLDAYRRM 573 (574)
T ss_pred ECCCCCHHHHHHHHHhcCCCeeeeEeCCCCCeEEEEEEHHHHHHHHHhh
Confidence 9999999999999999999999999987 4899999999999998663
|
|
| >cd04615 CBS_pair_2 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.8e-11 Score=100.71 Aligned_cols=109 Identities=21% Similarity=0.274 Sum_probs=86.7
Q ss_pred eEEEeCCCcHHHHHHHHHhcCCCCCEEEEEcCCCcEEEeeccCcccCcchhHHHHHhhcChhhhhhhh-ccCCCCchhHH
Q 016003 199 VVAVDYHSPASLALEAISRSLFDQTSVAVVDSDGFLIGEISPSTLGCCDETVAAAITTLSAGDLMAYI-DCGGPPEDLVR 277 (397)
Q Consensus 199 v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~is~~dl~~~~~~~~~~~~~ls~~Dl~~~~-~~~~~~~~l~~ 277 (397)
+.++.+++++.+|++.|.+.++ +.+||+|++|+++|++ +..|++... +.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~--~~~~vvd~~~~~~G~v-------------------~~~dl~~~~~~~--------- 52 (113)
T cd04615 3 PSCVVLNTDIARAVAEMYTSGS--RALPVVDDKKRLVGII-------------------TRYDVLSYALES--------- 52 (113)
T ss_pred CEEeeCCCcHHHHHHHHHHcCC--ceEeEEcCCCCEEEEE-------------------EHHHHHHhhhhh---------
Confidence 6778999999999999999988 9999999989999995 455655411 10
Q ss_pred HHHHHhhhcchhhhhhhhccccCCCCCCCCCCCCCccchhhhccccCCCccccccchhhhhcCCccEEeCCCCcHHHHHH
Q 016003 278 VVKERLKDKGLEGMLEHFDMSSSLMPYLSTSSSSDEESTATSKLTRSGKHSRSMSYSARMVRRAEAIVCHPTSSLMAVMI 357 (397)
Q Consensus 278 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~~~~sl~~v~~ 357 (397)
. .+. . .+...+|..++.++.+++++.+++.
T Consensus 53 ------------~---~~~---------------------------~--------~~i~~~~~~~~~~v~~~~~l~~~~~ 82 (113)
T cd04615 53 ------------E---ELK---------------------------D--------AKVREVMNSPVITIDANDSIAKARW 82 (113)
T ss_pred ------------h---hhc---------------------------C--------CcHHHhccCCceEECCCCcHHHHHH
Confidence 0 000 0 0011235668899999999999999
Q ss_pred HHHHcCCcEEEEEcCCCcEEEEEehHHHHH
Q 016003 358 QAIAHRVTYVWVIEDDCTLTGIVTFSDLLK 387 (397)
Q Consensus 358 ~m~~~~i~rl~VVd~~~~lvGvVt~~DIl~ 387 (397)
.|.+++.+++||+|++|+++|+||..||++
T Consensus 83 ~~~~~~~~~~~Vvd~~g~~~Gvvt~~dl~~ 112 (113)
T cd04615 83 LMSNNNISRLPVLDDKGKVGGIVTEDDILR 112 (113)
T ss_pred HHHHcCCCeeeEECCCCeEEEEEEHHHhhc
Confidence 999999999999999899999999999975
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera |
| >cd04604 CBS_pair_KpsF_GutQ_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with KpsF/GutQ domains in the API [A5P (D-arabinose 5-phosphate) isomerase] protein | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.7e-11 Score=100.65 Aligned_cols=112 Identities=24% Similarity=0.329 Sum_probs=88.0
Q ss_pred CeEEEeCCCcHHHHHHHHHhcCCCCCEEEEEcCCCcEEEeeccCcccCcchhHHHHHhhcChhhhhhhhccCCCCchhHH
Q 016003 198 DVVAVDYHSPASLALEAISRSLFDQTSVAVVDSDGFLIGEISPSTLGCCDETVAAAITTLSAGDLMAYIDCGGPPEDLVR 277 (397)
Q Consensus 198 ~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~is~~dl~~~~~~~~~~~~~ls~~Dl~~~~~~~~~~~~l~~ 277 (397)
++.+++++.++.++++.|.+.+. +.+||+|++|+++|+ ++..|++.++...
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~d~~~~~~G~-------------------v~~~~i~~~~~~~-------- 53 (114)
T cd04604 3 ALPLVSPDTSLKDALLEMSRKGL--GMTAVVDEDGRLVGI-------------------FTDGDLRRALEKG-------- 53 (114)
T ss_pred cccccCCCCcHHHHHHHHHhcCc--cEEEEEcCCCCEEEE-------------------echHHHHHHHhcc--------
Confidence 46778999999999999988878 999999999999999 5566666532100
Q ss_pred HHHHHhhhcchhhhhhhhccccCCCCCCCCCCCCCccchhhhccccCCCccccccchhhhhcCCccEEeCCCCcHHHHHH
Q 016003 278 VVKERLKDKGLEGMLEHFDMSSSLMPYLSTSSSSDEESTATSKLTRSGKHSRSMSYSARMVRRAEAIVCHPTSSLMAVMI 357 (397)
Q Consensus 278 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~~~~sl~~v~~ 357 (397)
.. + + . ......|..+..++.+++++.++++
T Consensus 54 -----------------~~-----~--------------~------~--------~~v~~~~~~~~~~v~~~~~~~~~~~ 83 (114)
T cd04604 54 -----------------LD-----I--------------L------T--------LPVADVMTRNPKTIDPDALAAEALE 83 (114)
T ss_pred -----------------Cc-----c--------------c------c--------CCHHHhhccCCeEECCCCcHHHHHH
Confidence 00 0 0 0 0011235667889999999999999
Q ss_pred HHHHcCCcEEEEEcCCCcEEEEEehHHHHHH
Q 016003 358 QAIAHRVTYVWVIEDDCTLTGIVTFSDLLKV 388 (397)
Q Consensus 358 ~m~~~~i~rl~VVd~~~~lvGvVt~~DIl~~ 388 (397)
+|.+++.+++||+|++++++|+||..||+++
T Consensus 84 ~~~~~~~~~~~Vv~~~~~~iG~it~~di~~~ 114 (114)
T cd04604 84 LMEENKITALPVVDDNGRPVGVLHIHDLLRA 114 (114)
T ss_pred HHHHcCCCEEEEECCCCCEEEEEEHHHhhcC
Confidence 9999999999999988999999999999863
|
These APIs catalyze the conversion of the pentose pathway intermediate D-ribulose 5-phosphate into A5P, a precursor of 3-deoxy-D-manno-octulosonate, which is an integral carbohydrate component of various glycolipids coating the surface of the outer membrane of Gram-negative bacteria, including lipopolysaccharide and many group 2 K-antigen capsules. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other funct |
| >cd04640 CBS_pair_27 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.2e-11 Score=104.49 Aligned_cols=117 Identities=21% Similarity=0.212 Sum_probs=82.3
Q ss_pred CeEEEeCCCcHHHHHHHHHhcCCCCCEEEEEcCCCcEEEeeccCcccCcchhHHHHHhhcChhhhhhhhccCCCCchhHH
Q 016003 198 DVVAVDYHSPASLALEAISRSLFDQTSVAVVDSDGFLIGEISPSTLGCCDETVAAAITTLSAGDLMAYIDCGGPPEDLVR 277 (397)
Q Consensus 198 ~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~is~~dl~~~~~~~~~~~~~ls~~Dl~~~~~~~~~~~~l~~ 277 (397)
++.++.++.++.+|++.|..+++ ..+||+|++|+++|+++ ..|++...-. +
T Consensus 2 ~~~~v~~~~~i~~a~~~~~~~~~--~~~~V~d~~~~~~Giv~-------------------~~dl~~~~~~--------~ 52 (126)
T cd04640 2 KPIVIPADTSIDEALELMIKHGV--RLLLVVDSDDNFIGVIT-------------------AVDLLGEEPI--------K 52 (126)
T ss_pred CCeEECCCCcHHHHHHHHHHcCC--cEEEEEcCCCcEEEEEE-------------------HHHHhhChhh--------H
Confidence 46789999999999999998888 99999999899999955 5555431000 0
Q ss_pred HHHHHhhhcchhhhhhhhccccCCCCCCCCCCCCCccchhhhccccCCCccccccchhhhhcCCccEEe------CCCCc
Q 016003 278 VVKERLKDKGLEGMLEHFDMSSSLMPYLSTSSSSDEESTATSKLTRSGKHSRSMSYSARMVRRAEAIVC------HPTSS 351 (397)
Q Consensus 278 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~------~~~~s 351 (397)
.+ .... ..+ . ......+|..+.+++ .++++
T Consensus 53 ----~~-----------~~~~-~~~--------------~--------------~~~v~~im~~~~~~~~~~~~~~~~~~ 88 (126)
T cd04640 53 ----RI-----------QEGG-ISR--------------S--------------ELTVADVMTPKEDLKALDLEELENAS 88 (126)
T ss_pred ----HH-----------HHcC-CCc--------------h--------------heEHHHhcCchhhhccccHHHhccCc
Confidence 00 0000 000 0 000112344443333 36899
Q ss_pred HHHHHHHHHHcCCcEEEEEcCC-CcEEEEEehHHHHH
Q 016003 352 LMAVMIQAIAHRVTYVWVIEDD-CTLTGIVTFSDLLK 387 (397)
Q Consensus 352 l~~v~~~m~~~~i~rl~VVd~~-~~lvGvVt~~DIl~ 387 (397)
+.+++++|.+++.+++||+|++ |+++|+||++||++
T Consensus 89 l~~~l~~m~~~~~~~lpVvd~~~~~~~G~it~~di~~ 125 (126)
T cd04640 89 VGDVVETLKASGRQHALVVDREHHQIRGIISTSDIAR 125 (126)
T ss_pred HHHHHHHHHHCCCceEEEEECCCCEEEEEEeHHHHhh
Confidence 9999999999999999999987 79999999999986
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener |
| >cd04629 CBS_pair_16 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.1e-11 Score=101.88 Aligned_cols=113 Identities=19% Similarity=0.272 Sum_probs=86.7
Q ss_pred CeEEEeCCCcHHHHHHHHHhcCCCCCEEEEEcCCCcEEEeeccCcccCcchhHHHHHhhcChhhhhhhhccCCCCchhHH
Q 016003 198 DVVAVDYHSPASLALEAISRSLFDQTSVAVVDSDGFLIGEISPSTLGCCDETVAAAITTLSAGDLMAYIDCGGPPEDLVR 277 (397)
Q Consensus 198 ~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~is~~dl~~~~~~~~~~~~~ls~~Dl~~~~~~~~~~~~l~~ 277 (397)
++.++.++.++.+|++.|.+.++ +.+||+|++|+++|+|+ ..|++..+-..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~V~~~~~~~~G~v~-------------------~~~l~~~~~~~-------- 52 (114)
T cd04629 2 NPVTFTPDMSVTEAVEKLLKSKI--SGGPVVDDNGNLVGFLS-------------------EQDCLKQLLES-------- 52 (114)
T ss_pred CCeEeCCCCCHHHHHHHHHhcCC--CCccEECCCCeEEEEee-------------------hHHHHHHhhhh--------
Confidence 56789999999999999998888 99999999999999954 55554311000
Q ss_pred HHHHHhhhcchhhhhhhhccccCCCCCCCCCCCCCccchhhhccccCCCccccccchhhhhcCCccEEeCCCCcHHHHHH
Q 016003 278 VVKERLKDKGLEGMLEHFDMSSSLMPYLSTSSSSDEESTATSKLTRSGKHSRSMSYSARMVRRAEAIVCHPTSSLMAVMI 357 (397)
Q Consensus 278 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~~~~sl~~v~~ 357 (397)
. ... . .. ....+.|..+++++.+++++.++++
T Consensus 53 ----~------------~~~----~--------------------~~--------~~v~~~~~~~~~~v~~~~~l~~~~~ 84 (114)
T cd04629 53 ----S------------YHC----D--------------------GV--------ATVRDIMTTEVLTVSPDDSIVDLAQ 84 (114)
T ss_pred ----h------------hcc----C--------------------CC--------ccHHHHhccCceEECCCCcHHHHHH
Confidence 0 000 0 00 0011235667899999999999999
Q ss_pred HHHHcCCcEEEEEcCCCcEEEEEehHHHHHH
Q 016003 358 QAIAHRVTYVWVIEDDCTLTGIVTFSDLLKV 388 (397)
Q Consensus 358 ~m~~~~i~rl~VVd~~~~lvGvVt~~DIl~~ 388 (397)
.|.+++.+++||+|+ |+++|+||..||+++
T Consensus 85 ~~~~~~~~~~~Vv~~-~~~~Gvit~~di~~~ 114 (114)
T cd04629 85 LMLKAKPKRYPVVDD-GKLVGQISRRDVLRA 114 (114)
T ss_pred HHHHhCCCccCEEEC-CEEEEEEEHHHHhcC
Confidence 999999999999998 899999999999863
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener |
| >cd04624 CBS_pair_11 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=99.32 E-value=3.6e-11 Score=98.70 Aligned_cols=110 Identities=19% Similarity=0.289 Sum_probs=87.6
Q ss_pred CeEEEeCCCcHHHHHHHHHhcCCCCCEEEEEcCCCcEEEeeccCcccCcchhHHHHHhhcChhhhhhhhccCCCCchhHH
Q 016003 198 DVVAVDYHSPASLALEAISRSLFDQTSVAVVDSDGFLIGEISPSTLGCCDETVAAAITTLSAGDLMAYIDCGGPPEDLVR 277 (397)
Q Consensus 198 ~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~is~~dl~~~~~~~~~~~~~ls~~Dl~~~~~~~~~~~~l~~ 277 (397)
++.+++++.++.+|++.|.+.+. +.+||+|++|+++|+ ++..|++..+...
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~--~~~~v~d~~~~~~G~-------------------v~~~~l~~~~~~~-------- 52 (112)
T cd04624 2 PVVTVDPDTSIREAAKLMAEENV--GSVVVVDPDERPIGI-------------------VTERDIVRAVAAG-------- 52 (112)
T ss_pred CCeEECCCCcHHHHHHHHHHcCC--CEEEEECCCCCEEEE-------------------eeHHHHHHHHhcc--------
Confidence 46789999999999999998888 999999999999999 4566665422100
Q ss_pred HHHHHhhhcchhhhhhhhccccCCCCCCCCCCCCCccchhhhccccCCCccccccchhhhhcCCccEEeCCCCcHHHHHH
Q 016003 278 VVKERLKDKGLEGMLEHFDMSSSLMPYLSTSSSSDEESTATSKLTRSGKHSRSMSYSARMVRRAEAIVCHPTSSLMAVMI 357 (397)
Q Consensus 278 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~~~~sl~~v~~ 357 (397)
.++ ... ...+|..++.+|.+++++.+++.
T Consensus 53 -----------------------~~~--------------------~~~--------v~~~~~~~~~~v~~~~~~~~~~~ 81 (112)
T cd04624 53 -----------------------IDL--------------------DTP--------VSEIMTRDLVTVDPDEPVAEAAK 81 (112)
T ss_pred -----------------------CCC--------------------ccC--------HHHhccCCCEEECCCCcHHHHHH
Confidence 000 000 11235668899999999999999
Q ss_pred HHHHcCCcEEEEEcCCCcEEEEEehHHHHH
Q 016003 358 QAIAHRVTYVWVIEDDCTLTGIVTFSDLLK 387 (397)
Q Consensus 358 ~m~~~~i~rl~VVd~~~~lvGvVt~~DIl~ 387 (397)
+|.+++++.+||+|++|+++|++|+.|+++
T Consensus 82 ~~~~~~~~~~~Vv~~~g~~~Gilt~~dl~~ 111 (112)
T cd04624 82 LMRKNNIRHHLVVDKGGELVGVISIRDLVR 111 (112)
T ss_pred HHHHcCccEEEEEcCCCcEEEEEEHHHhcc
Confidence 999999999999999899999999999986
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener |
| >cd04601 CBS_pair_IMPDH This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.9e-11 Score=99.74 Aligned_cols=107 Identities=25% Similarity=0.341 Sum_probs=83.2
Q ss_pred cCeEEEeCCCcHHHHHHHHHhcCCCCCEEEEEcCCCcEEEeeccCcccCcchhHHHHHhhcChhhhhhhhccCCCCchhH
Q 016003 197 TDVVAVDYHSPASLALEAISRSLFDQTSVAVVDSDGFLIGEISPSTLGCCDETVAAAITTLSAGDLMAYIDCGGPPEDLV 276 (397)
Q Consensus 197 ~~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~is~~dl~~~~~~~~~~~~~ls~~Dl~~~~~~~~~~~~l~ 276 (397)
+++.++.+++++.++++.|.+.+. +++||+|++|+++|+++..+|.+. ... .
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~V~d~~~~~~G~v~~~~l~~~-------------------~~~---~---- 53 (110)
T cd04601 2 RDPITVSPDATVAEALELMAEYGI--SGLPVVDDDGKLVGIVTNRDLRFE-------------------TDL---D---- 53 (110)
T ss_pred CCCeEeCCCCcHHHHHHHHHHcCC--ceEEEEcCCCEEEEEEEhhHeeec-------------------ccC---C----
Confidence 357789999999999999998888 999999998999999664443320 000 0
Q ss_pred HHHHHHhhhcchhhhhhhhccccCCCCCCCCCCCCCccchhhhccccCCCccccccchhhhhcCCccEEeCC-CCcHHHH
Q 016003 277 RVVKERLKDKGLEGMLEHFDMSSSLMPYLSTSSSSDEESTATSKLTRSGKHSRSMSYSARMVRRAEAIVCHP-TSSLMAV 355 (397)
Q Consensus 277 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~~-~~sl~~v 355 (397)
.. ...+|...+.++.+ ++++.++
T Consensus 54 ---------~~-----------------------------------------------v~~~~~~~~~~~~~~~~~l~~~ 77 (110)
T cd04601 54 ---------KP-----------------------------------------------VSEVMTPENLLTTVEGTSLEEA 77 (110)
T ss_pred ---------CC-----------------------------------------------HHHhcccCceEEecCCCCHHHH
Confidence 00 00123344556666 9999999
Q ss_pred HHHHHHcCCcEEEEEcCCCcEEEEEehHHHHH
Q 016003 356 MIQAIAHRVTYVWVIEDDCTLTGIVTFSDLLK 387 (397)
Q Consensus 356 ~~~m~~~~i~rl~VVd~~~~lvGvVt~~DIl~ 387 (397)
+++|.+++.+++||+|++|+++|+||.+|+++
T Consensus 78 ~~~~~~~~~~~~~Vv~~~~~~~Gvi~~~dil~ 109 (110)
T cd04601 78 LELLHEHKIEKLPVVDDEGKLKGLITVKDIEK 109 (110)
T ss_pred HHHHHHhCCCeeeEEcCCCCEEEEEEhhhhhc
Confidence 99999999999999998899999999999986
|
IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentosa. |
| >cd04620 CBS_pair_7 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=99.32 E-value=2.4e-11 Score=100.43 Aligned_cols=111 Identities=20% Similarity=0.312 Sum_probs=84.0
Q ss_pred CeEEEeCCCcHHHHHHHHHhcC-CCCCEEEEEcCCCcEEEeeccCcccCcchhHHHHHhhcChhhhhhhhccCCCCchhH
Q 016003 198 DVVAVDYHSPASLALEAISRSL-FDQTSVAVVDSDGFLIGEISPSTLGCCDETVAAAITTLSAGDLMAYIDCGGPPEDLV 276 (397)
Q Consensus 198 ~v~tv~~~~~~~~a~~~m~~~~-i~~s~vpVVd~~g~lvG~is~~dl~~~~~~~~~~~~~ls~~Dl~~~~~~~~~~~~l~ 276 (397)
++.++.++.++.+|++.|...+ . ..++|+| +|+++|+ ++..|++.+....
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~-~~~~~G~-------------------v~~~dl~~~~~~~------- 52 (115)
T cd04620 2 HPLTVTPDTPVADAIALMSQQGDS--SCVLVVE-KGRLLGI-------------------FTERDIVRLTAIG------- 52 (115)
T ss_pred CCeEeCCCCcHHHHHHHHHhcCCC--ceEEEcC-CCcEEEE-------------------EeHHHHHHHHhcC-------
Confidence 4678999999999999998877 5 6677777 5899999 5667766522100
Q ss_pred HHHHHHhhhcchhhhhhhhccccCCCCCCCCCCCCCccchhhhccccCCCccccccchhhhhcCCccEEeCCC--CcHHH
Q 016003 277 RVVKERLKDKGLEGMLEHFDMSSSLMPYLSTSSSSDEESTATSKLTRSGKHSRSMSYSARMVRRAEAIVCHPT--SSLMA 354 (397)
Q Consensus 277 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~~~--~sl~~ 354 (397)
. . . + . .+....|..+++++.++ +++.+
T Consensus 53 -----------~-------~-----~--------------~------~--------~~i~~~~~~~~~~v~~~~~~~l~~ 81 (115)
T cd04620 53 -----------K-------D-----L--------------S------D--------LPIGEVMTQPVVTLQESEIQDIFT 81 (115)
T ss_pred -----------C-------C-----c--------------c------c--------cCHHHhcCCCcEEEecccccCHHH
Confidence 0 0 0 0 0 00112356678889887 78999
Q ss_pred HHHHHHHcCCcEEEEEcCCCcEEEEEehHHHHHH
Q 016003 355 VMIQAIAHRVTYVWVIEDDCTLTGIVTFSDLLKV 388 (397)
Q Consensus 355 v~~~m~~~~i~rl~VVd~~~~lvGvVt~~DIl~~ 388 (397)
++++|.+++.+++||+|++|+++|+||..||+++
T Consensus 82 a~~~~~~~~~~~~pVvd~~~~~~Gvit~~dl~~~ 115 (115)
T cd04620 82 ALSLFRQHQIRHLPVLDDQGQLIGLVTAESIRQV 115 (115)
T ss_pred HHHHHHHhCCceEEEEcCCCCEEEEEEhHHhhcC
Confidence 9999999999999999998999999999999874
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera |
| >cd04627 CBS_pair_14 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.7e-11 Score=102.86 Aligned_cols=116 Identities=28% Similarity=0.466 Sum_probs=88.0
Q ss_pred ceEEeCCCCCHHHHHHHHh-cCCceEEEeccCcchhhhhhhcccccccccCCCCceeeeecHHHHHHHHHhccCCC---C
Q 016003 107 LVMHVEPSCSLLEAMDLML-GGAQNLVVPIKNRLSIKRKQQQKLSSSSLTNHNGREFCWLTQEDIIRFILSSISLF---S 182 (397)
Q Consensus 107 ~~~~V~~~~sL~~al~~m~-~g~~r~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IITq~DIi~~l~~~~~~l---~ 182 (397)
++.++.+++++.++++.|. +++++++|.+.+ .++..|+||+.|+++++.++.... .
T Consensus 2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~~--------------------~~~~~Giv~~~dl~~~~~~~~~~~~~~~ 61 (123)
T cd04627 2 PFIPVPSTASLFQAIEILGSGGIHRVAVTEEE--------------------SGEVIGILSQRRLVEFLWENARSFPGLD 61 (123)
T ss_pred CceecCCCCCHHHHHHHHhhCCcceEEEEeCC--------------------CCcEEEEEEHHHHHHHHHHhHHhccchh
Confidence 4788999999999999998 578888887532 035678999999999875432111 1
Q ss_pred CCccCCccccCCCCcCeEEEeCCCcHHHHHHHHHhcCCCCCEEEEEcCCCcEEEeeccCccc
Q 016003 183 PIPALSIDSLGIISTDVVAVDYHSPASLALEAISRSLFDQTSVAVVDSDGFLIGEISPSTLG 244 (397)
Q Consensus 183 ~l~~~ti~~L~~~~~~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~is~~dl~ 244 (397)
......+....+|..++.++.+++++.+|++.|.++++ +.+||+|++|+++|+||.+||.
T Consensus 62 ~~~~~~~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~--~~lpVvd~~~~~vGiit~~di~ 121 (123)
T cd04627 62 PLYPIPLRDLTIGTSDVISINGDQPLIDALHLMHNEGI--SSVAVVDNQGNLIGNISVTDVR 121 (123)
T ss_pred hhhhhhhhhcccCcCCceEeCCCCCHHHHHHHHHHcCC--ceEEEECCCCcEEEEEeHHHhh
Confidence 10001122234678889999999999999999999999 9999999999999997766554
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener |
| >cd04588 CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the archaeal CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain | Back alignment and domain information |
|---|
Probab=99.31 E-value=3.9e-11 Score=98.16 Aligned_cols=109 Identities=20% Similarity=0.291 Sum_probs=86.8
Q ss_pred cCeEEEeCCCcHHHHHHHHHhcCCCCCEEEEEcCCCcEEEeeccCcccCcchhHHHHHhhcChhhhhhhhccCCCCchhH
Q 016003 197 TDVVAVDYHSPASLALEAISRSLFDQTSVAVVDSDGFLIGEISPSTLGCCDETVAAAITTLSAGDLMAYIDCGGPPEDLV 276 (397)
Q Consensus 197 ~~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~is~~dl~~~~~~~~~~~~~ls~~Dl~~~~~~~~~~~~l~ 276 (397)
++++++++++++.+|++.|.+.++ +.+||+|+ |+++|++ +..|++.....+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~-~~~~G~v-------------------~~~~l~~~~~~~------- 51 (110)
T cd04588 1 KPLITLNPNATLREAARLFNTHHI--HGAPVVDD-GKLVGIV-------------------TLSDIAHAIARG------- 51 (110)
T ss_pred CCcEEECCCCCHHHHHHHHHHcCC--CEEEEeeC-CEEEEEE-------------------EHHHHHHHHhcc-------
Confidence 367889999999999999999988 99999998 9999994 455555421100
Q ss_pred HHHHHHhhhcchhhhhhhhccccCCCCCCCCCCCCCccchhhhccccCCCccccccchhhhhcCCccEEeCCCCcHHHHH
Q 016003 277 RVVKERLKDKGLEGMLEHFDMSSSLMPYLSTSSSSDEESTATSKLTRSGKHSRSMSYSARMVRRAEAIVCHPTSSLMAVM 356 (397)
Q Consensus 277 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~~~~sl~~v~ 356 (397)
++ . ......+..++.++.+++++.+++
T Consensus 52 -------------------------~~--------------------~--------~~v~~~~~~~~~~v~~~~~~~~~~ 78 (110)
T cd04588 52 -------------------------LE--------------------L--------AKVKDVMTKDVITIDEDEQLYDAI 78 (110)
T ss_pred -------------------------cc--------------------c--------cCHHHHhcCCceEECCCCCHHHHH
Confidence 00 0 000123456889999999999999
Q ss_pred HHHHHcCCcEEEEEcCCCcEEEEEehHHHHH
Q 016003 357 IQAIAHRVTYVWVIEDDCTLTGIVTFSDLLK 387 (397)
Q Consensus 357 ~~m~~~~i~rl~VVd~~~~lvGvVt~~DIl~ 387 (397)
+.|.+++++++||+|++|+++|+||..||++
T Consensus 79 ~~~~~~~~~~~~V~~~~~~~~G~i~~~dl~~ 109 (110)
T cd04588 79 RLMNKHNVGRLIVTDDEGRPVGIITRTDILR 109 (110)
T ss_pred HHHHhcCCCEEEEECCCCCEEEEEEhHHhhc
Confidence 9999999999999999899999999999985
|
Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. |
| >cd04585 CBS_pair_ACT_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria | Back alignment and domain information |
|---|
Probab=99.31 E-value=2.6e-11 Score=100.53 Aligned_cols=121 Identities=20% Similarity=0.230 Sum_probs=87.8
Q ss_pred CeEEEeCCCcHHHHHHHHHhcCCCCCEEEEEcCCCcEEEeeccCcccCcchhHHHHHhhcChhhhhhhhccCCCCchhHH
Q 016003 198 DVVAVDYHSPASLALEAISRSLFDQTSVAVVDSDGFLIGEISPSTLGCCDETVAAAITTLSAGDLMAYIDCGGPPEDLVR 277 (397)
Q Consensus 198 ~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~is~~dl~~~~~~~~~~~~~ls~~Dl~~~~~~~~~~~~l~~ 277 (397)
++.++.++.++.+|++.|.+.++ ..+||+|+ |+++|+|+ ..|++......
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~--~~~~V~d~-~~~~G~i~-------------------~~~l~~~~~~~-------- 51 (122)
T cd04585 2 NPITVTPDTSLMEALKLMKENSI--RRLPVVDR-GKLVGIVT-------------------DRDLKLASPSK-------- 51 (122)
T ss_pred CCEEeCCCCcHHHHHHHHHhCCc--ceeeEecC-CeEEEEEe-------------------HHHHHHhhhcc--------
Confidence 56789999999999999999888 99999998 99999955 44444321100
Q ss_pred HHHHHhhhcchhhhhhhhccccCCCCCCCCCCCCCccchhhhccccCCCccccccchhhhhcCCccEEeCCCCcHHHHHH
Q 016003 278 VVKERLKDKGLEGMLEHFDMSSSLMPYLSTSSSSDEESTATSKLTRSGKHSRSMSYSARMVRRAEAIVCHPTSSLMAVMI 357 (397)
Q Consensus 278 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~~~~sl~~v~~ 357 (397)
.... .. + +..+ ... +.+...+|..+++++.+++++.+++.
T Consensus 52 ----------~~~~---~~-----~-------------~~~~------~~~---~~~~~~~~~~~~~~v~~~~~l~~~~~ 91 (122)
T cd04585 52 ----------ATTL---DI-----W-------------ELYY------LLS---KIKVSDIMTRDPITVSPDASVEEAAE 91 (122)
T ss_pred ----------cccc---cc-----h-------------hhhh------hhc---ccCHHHhccCCCeEeCCCCcHHHHHH
Confidence 0000 00 0 0000 000 01112346678999999999999999
Q ss_pred HHHHcCCcEEEEEcCCCcEEEEEehHHHHHH
Q 016003 358 QAIAHRVTYVWVIEDDCTLTGIVTFSDLLKV 388 (397)
Q Consensus 358 ~m~~~~i~rl~VVd~~~~lvGvVt~~DIl~~ 388 (397)
.|.+++.+++||+|++|+++|+||..||+++
T Consensus 92 ~~~~~~~~~~~Vv~~~~~~~Gvvt~~di~~~ 122 (122)
T cd04585 92 LMLERKISGLPVVDDQGRLVGIITESDLFRA 122 (122)
T ss_pred HHHHcCCCceeEECCCCcEEEEEEHHHhhhC
Confidence 9999999999999988999999999999863
|
Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The i |
| >cd04606 CBS_pair_Mg_transporter This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain in the magnesium transporter, MgtE | Back alignment and domain information |
|---|
Probab=99.31 E-value=2.1e-11 Score=100.01 Aligned_cols=104 Identities=24% Similarity=0.294 Sum_probs=82.1
Q ss_pred EEeCCCcHHHHHHHHHhcC-----CCCCEEEEEcCCCcEEEeeccCcccCcchhHHHHHhhcChhhhhhhhccCCCCchh
Q 016003 201 AVDYHSPASLALEAISRSL-----FDQTSVAVVDSDGFLIGEISPSTLGCCDETVAAAITTLSAGDLMAYIDCGGPPEDL 275 (397)
Q Consensus 201 tv~~~~~~~~a~~~m~~~~-----i~~s~vpVVd~~g~lvG~is~~dl~~~~~~~~~~~~~ls~~Dl~~~~~~~~~~~~l 275 (397)
++.+++++.++++.|.+++ . ..+||+|++|+++|+|+ .+|++..- .+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~vvd~~~~~~G~v~-------------------~~~l~~~~-----~~-- 52 (109)
T cd04606 1 AVREDWTVGEALEYLRRNADDPETI--YYIYVVDEEGRLLGVVS-------------------LRDLLLAD-----PD-- 52 (109)
T ss_pred CccccCcHHHHHHHHHhccCcccce--eEEEEECCCCCEEEEEE-------------------HHHHhcCC-----Cc--
Confidence 3678999999999998776 4 68999998899999954 44443200 00
Q ss_pred HHHHHHHhhhcchhhhhhhhccccCCCCCCCCCCCCCccchhhhccccCCCccccccchhhhhcCCccEEeCCCCcHHHH
Q 016003 276 VRVVKERLKDKGLEGMLEHFDMSSSLMPYLSTSSSSDEESTATSKLTRSGKHSRSMSYSARMVRRAEAIVCHPTSSLMAV 355 (397)
Q Consensus 276 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~~~~sl~~v 355 (397)
.+....+..++.++.+++++.++
T Consensus 53 ---------------------------------------------------------~~v~~~~~~~~~~i~~~~~~~~~ 75 (109)
T cd04606 53 ---------------------------------------------------------TPVSDIMDTDVISVSADDDQEEV 75 (109)
T ss_pred ---------------------------------------------------------chHHHHhCCCCeEEcCCCCHHHH
Confidence 00011245578999999999999
Q ss_pred HHHHHHcCCcEEEEEcCCCcEEEEEehHHHHHHH
Q 016003 356 MIQAIAHRVTYVWVIEDDCTLTGIVTFSDLLKVF 389 (397)
Q Consensus 356 ~~~m~~~~i~rl~VVd~~~~lvGvVt~~DIl~~l 389 (397)
++.|.+++.+++||+|++|+++|+||..|+++++
T Consensus 76 ~~~~~~~~~~~~~Vv~~~~~~~Gvit~~dll~~~ 109 (109)
T cd04606 76 ARLFEKYDLLALPVVDEEGRLVGIITVDDVIDVI 109 (109)
T ss_pred HHHHHHcCCceeeeECCCCcEEEEEEhHHhhhhC
Confidence 9999999999999999889999999999999863
|
MgtE and its homologs are found in eubacteria, archaebacteria, and eukaryota. Members of this family transport Mg2+ or other divalent cations into the cell via two highly conserved aspartates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. |
| >cd04587 CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain | Back alignment and domain information |
|---|
Probab=99.30 E-value=2.1e-11 Score=100.20 Aligned_cols=111 Identities=14% Similarity=0.232 Sum_probs=86.1
Q ss_pred CeEEEeCCCcHHHHHHHHHhcCCCCCEEEEEcCCCcEEEeeccCcccCcchhHHHHHhhcChhhhhhhhccCCCCchhHH
Q 016003 198 DVVAVDYHSPASLALEAISRSLFDQTSVAVVDSDGFLIGEISPSTLGCCDETVAAAITTLSAGDLMAYIDCGGPPEDLVR 277 (397)
Q Consensus 198 ~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~is~~dl~~~~~~~~~~~~~ls~~Dl~~~~~~~~~~~~l~~ 277 (397)
++.++.+++++.++++.|.+++. +.+||+|+ |+++|+| +.+|++...-..
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~--~~~~V~~~-~~~~G~v-------------------~~~dl~~~~~~~-------- 51 (113)
T cd04587 2 KPATVSPTTTVQEAAKLMREKRV--SCVLVMDG-NKLVGIF-------------------TSKDIALRVVAQ-------- 51 (113)
T ss_pred CCeEeCCCCCHHHHHHHHHHcCC--CeEEEEEC-CEEEEEE-------------------EhHHHHHHHHhc--------
Confidence 57789999999999999998888 99999998 9999994 455654311000
Q ss_pred HHHHHhhhcchhhhhhhhccccCCCCCCCCCCCCCccchhhhccccCCCccccccchhhhhcCCccEEeCCCCcHHHHHH
Q 016003 278 VVKERLKDKGLEGMLEHFDMSSSLMPYLSTSSSSDEESTATSKLTRSGKHSRSMSYSARMVRRAEAIVCHPTSSLMAVMI 357 (397)
Q Consensus 278 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~~~~sl~~v~~ 357 (397)
+.. . . ..+...+|..++.+|.+++++.+++.
T Consensus 52 ---------~~~---------------------------~-----~--------~~~v~~i~~~~~~~v~~~~~l~~~~~ 82 (113)
T cd04587 52 ---------GLD---------------------------P-----E--------STLVERVMTPNPVCATSDTPVLEALH 82 (113)
T ss_pred ---------CCC---------------------------c-----C--------cCCHHHhcCCCCeEEcCCCCHHHHHH
Confidence 000 0 0 00011245668899999999999999
Q ss_pred HHHHcCCcEEEEEcCCCcEEEEEehHHHHH
Q 016003 358 QAIAHRVTYVWVIEDDCTLTGIVTFSDLLK 387 (397)
Q Consensus 358 ~m~~~~i~rl~VVd~~~~lvGvVt~~DIl~ 387 (397)
.|.+++.+++||+|++|+++|+||..||+.
T Consensus 83 ~~~~~~~~~l~Vv~~~~~~~Gvvs~~dl~~ 112 (113)
T cd04587 83 LMVQGKFRHLPVVDKSGQVVGLLDVTKLTH 112 (113)
T ss_pred HHHHcCCCcccEECCCCCEEEEEEHHHhcc
Confidence 999999999999998899999999999975
|
Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pai |
| >cd04613 CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC | Back alignment and domain information |
|---|
Probab=99.30 E-value=2.9e-11 Score=99.21 Aligned_cols=112 Identities=29% Similarity=0.325 Sum_probs=88.7
Q ss_pred cCeEEEeCCCcHHHHHHHHHhcCCCCCEEEEEcCCCcEEEeeccCcccCcchhHHHHHhhcChhhhhhhhccCCCCchhH
Q 016003 197 TDVVAVDYHSPASLALEAISRSLFDQTSVAVVDSDGFLIGEISPSTLGCCDETVAAAITTLSAGDLMAYIDCGGPPEDLV 276 (397)
Q Consensus 197 ~~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~is~~dl~~~~~~~~~~~~~ls~~Dl~~~~~~~~~~~~l~ 276 (397)
+++.++.+++++.++++.|...++ +.+||+|++|+++|+| +..|++.+....
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~G~v-------------------~~~~l~~~~~~~------- 52 (114)
T cd04613 1 RDVVTIPEDTPLNELLDVIAHSPE--NNFPVVDDDGRLVGIV-------------------SLDDIREILFDP------- 52 (114)
T ss_pred CCceeeCCCCcHHHHHHHHHhCCC--cceeEECCCCCEEEEE-------------------EHHHHHHHHhcc-------
Confidence 357889999999999999999888 9999999989999994 456665422100
Q ss_pred HHHHHHhhhcchhhhhhhhccccCCCCCCCCCCCCCccchhhhccccCCCccccccchhhhhcCCccEEeCCCCcHHHHH
Q 016003 277 RVVKERLKDKGLEGMLEHFDMSSSLMPYLSTSSSSDEESTATSKLTRSGKHSRSMSYSARMVRRAEAIVCHPTSSLMAVM 356 (397)
Q Consensus 277 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~~~~sl~~v~ 356 (397)
..+ + ..+...+|..++.++.+++++.+++
T Consensus 53 -----------------------~~~--------------~--------------~~~v~~~~~~~~~~v~~~~~~~~~~ 81 (114)
T cd04613 53 -----------------------SLY--------------D--------------LVVASDIMTKPPVVVYPEDSLEDAL 81 (114)
T ss_pred -----------------------ccc--------------c--------------cEEHHHhccCCCcEEcCCCCHHHHH
Confidence 000 0 0001124567889999999999999
Q ss_pred HHHHHcCCcEEEEEcC-CCcEEEEEehHHHHH
Q 016003 357 IQAIAHRVTYVWVIED-DCTLTGIVTFSDLLK 387 (397)
Q Consensus 357 ~~m~~~~i~rl~VVd~-~~~lvGvVt~~DIl~ 387 (397)
..|.+++.+++||+|+ +++++|+||..||++
T Consensus 82 ~~~~~~~~~~~~Vv~~~~~~~~Gvvt~~di~~ 113 (114)
T cd04613 82 KKFEDSDYEQLPVVDDDPGKLLGILSRSDLLS 113 (114)
T ss_pred HHHhhCCccEeeEEeCCCCEEEEEEEhHHhhc
Confidence 9999999999999998 789999999999986
|
SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase a |
| >PRK15094 magnesium/cobalt efflux protein CorC; Provisional | Back alignment and domain information |
|---|
Probab=99.30 E-value=2.2e-11 Score=118.67 Aligned_cols=126 Identities=18% Similarity=0.300 Sum_probs=99.8
Q ss_pred CccCCccccCCCCc--CeEEEeCCCcHHHHHHHHHhcCCCCCEEEEEcCC-CcEEEeeccCcccCcchhHHHHHhhcChh
Q 016003 184 IPALSIDSLGIIST--DVVAVDYHSPASLALEAISRSLFDQTSVAVVDSD-GFLIGEISPSTLGCCDETVAAAITTLSAG 260 (397)
Q Consensus 184 l~~~ti~~L~~~~~--~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~-g~lvG~is~~dl~~~~~~~~~~~~~ls~~ 260 (397)
+...++.+ +|++ +++++.+++++.++++.+..++. +.+||++++ ++++|+ ++.+
T Consensus 64 l~~~~V~d--iMtpr~~i~~l~~~~sl~e~~~~i~~~~~--sr~PV~~~~~d~iiGi-------------------v~~k 120 (292)
T PRK15094 64 IADQRVRD--IMIPRSQMITLKRNQTLDECLDVIIESAH--SRFPVISEDKDHIEGI-------------------LMAK 120 (292)
T ss_pred cCCCEEeE--EccchHHEEEEeCCCCHHHHHHHHHhcCC--cEEEEecCCCCcEEEE-------------------EEHH
Confidence 34566766 7986 79999999999999999999999 999999976 699999 5577
Q ss_pred hhhhhhccCCCCchhHHHHHHHhhhcchhhhhhhhccccCCCCCCCCCCCCCccchhhhccccCCCccccccchhhhhcC
Q 016003 261 DLMAYIDCGGPPEDLVRVVKERLKDKGLEGMLEHFDMSSSLMPYLSTSSSSDEESTATSKLTRSGKHSRSMSYSARMVRR 340 (397)
Q Consensus 261 Dl~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (397)
|++.+.... . .... ...+|
T Consensus 121 Dll~~~~~~--------------------------------~--------------------~~~~--------l~~l~- 139 (292)
T PRK15094 121 DLLPFMRSD--------------------------------A--------------------EAFS--------MDKVL- 139 (292)
T ss_pred HHHhHhhcc--------------------------------C--------------------CcCC--------HHHHc-
Confidence 776422100 0 0000 01123
Q ss_pred CccEEeCCCCcHHHHHHHHHHcCCcEEEEEcCCCcEEEEEehHHHHHHHHHHH
Q 016003 341 AEAIVCHPTSSLMAVMIQAIAHRVTYVWVIEDDCTLTGIVTFSDLLKVFRKHL 393 (397)
Q Consensus 341 ~~~it~~~~~sl~~v~~~m~~~~i~rl~VVd~~~~lvGvVt~~DIl~~l~~~~ 393 (397)
.+++++.++.++.+++.+|.+++.|.++|+|+.|.++|+||+.||+..+...+
T Consensus 140 r~~~~V~e~~~l~~~L~~m~~~~~~~a~VvDe~G~viGiVTleDIle~ivGei 192 (292)
T PRK15094 140 RQAVVVPESKRVDRMLKEFRSQRYHMAIVIDEFGGVSGLVTIEDILELIVGEI 192 (292)
T ss_pred CCCcCcCCCCcHHHHHHHHHhcCCEEEEEEeCCCCEEEEeEHHHHHHHHhCCC
Confidence 35669999999999999999999999999999899999999999999998653
|
|
| >COG0517 FOG: CBS domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.30 E-value=4.5e-11 Score=98.64 Aligned_cols=112 Identities=28% Similarity=0.453 Sum_probs=90.4
Q ss_pred CCCcCeEEEeCCCcHHHHHHHHHhcCCCCCEEEEEcCCCcEEEeeccCcccCcchhHHHHHhhcChhhhhhhhccCCCCc
Q 016003 194 IISTDVVAVDYHSPASLALEAISRSLFDQTSVAVVDSDGFLIGEISPSTLGCCDETVAAAITTLSAGDLMAYIDCGGPPE 273 (397)
Q Consensus 194 ~~~~~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~is~~dl~~~~~~~~~~~~~ls~~Dl~~~~~~~~~~~ 273 (397)
++.++++++.+++++.+|+..|.++++ +++||++.. +++|+ ++.+|++.......
T Consensus 4 ~~~~~~~~v~~~~~~~~a~~~m~~~~~--~~~~v~~~~-~l~Gi-------------------it~~di~~~~~~~~--- 58 (117)
T COG0517 4 IMTKDVITVKPDTSVRDALLLMSENGV--SAVPVVDDG-KLVGI-------------------ITERDILRALAAGG--- 58 (117)
T ss_pred cccCCCEEECCCCcHHHHHHHHHHcCC--CEEEEeeCC-EEEEE-------------------EEHHHHHHHHhccC---
Confidence 345789999999999999999999999 999999854 79999 56777776331100
Q ss_pred hhHHHHHHHhhhcchhhhhhhhccccCCCCCCCCCCCCCccchhhhccccCCCccccccchhhhhcCCccEEeCCCCcHH
Q 016003 274 DLVRVVKERLKDKGLEGMLEHFDMSSSLMPYLSTSSSSDEESTATSKLTRSGKHSRSMSYSARMVRRAEAIVCHPTSSLM 353 (397)
Q Consensus 274 ~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~~~~sl~ 353 (397)
. ... ....+|+.+++++.++.++.
T Consensus 59 ----------------------~--------------------------~~~--------~v~~v~~~~~~~~~~~~~~~ 82 (117)
T COG0517 59 ----------------------K--------------------------RLL--------PVKEVMTKPVVTVDPDTPLE 82 (117)
T ss_pred ----------------------C--------------------------ccc--------cHHHhccCCcEEECCCCCHH
Confidence 0 000 01235677999999999999
Q ss_pred HHHHHHHH-cCCcEEEEEcCCC-cEEEEEehHHHH
Q 016003 354 AVMIQAIA-HRVTYVWVIEDDC-TLTGIVTFSDLL 386 (397)
Q Consensus 354 ~v~~~m~~-~~i~rl~VVd~~~-~lvGvVt~~DIl 386 (397)
+++..|.+ ++++++||+|+++ +++|++|.+||+
T Consensus 83 ~~~~~m~~~~~~~~lpVv~~~~~~lvGivt~~di~ 117 (117)
T COG0517 83 EALELMVERHKIRRLPVVDDDGGKLVGIITLSDIL 117 (117)
T ss_pred HHHHHHHHHcCcCeEEEEECCCCeEEEEEEHHHcC
Confidence 99999999 7999999999986 999999999984
|
|
| >cd04612 CBS_pair_SpoIVFB_EriC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC | Back alignment and domain information |
|---|
Probab=99.30 E-value=3.4e-11 Score=98.42 Aligned_cols=111 Identities=23% Similarity=0.273 Sum_probs=87.3
Q ss_pred cCeEEEeCCCcHHHHHHHHHhcCCCCCEEEEEcCCCcEEEeeccCcccCcchhHHHHHhhcChhhhhhhhccCCCCchhH
Q 016003 197 TDVVAVDYHSPASLALEAISRSLFDQTSVAVVDSDGFLIGEISPSTLGCCDETVAAAITTLSAGDLMAYIDCGGPPEDLV 276 (397)
Q Consensus 197 ~~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~is~~dl~~~~~~~~~~~~~ls~~Dl~~~~~~~~~~~~l~ 276 (397)
++++++.+++++.++++.|.+.+. +.+||+|+ |+++|++ +..|+......
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~-~~~~G~v-------------------~~~dl~~~~~~-------- 50 (111)
T cd04612 1 PDVVTVPVDLTVDEVLALMFGERH--RGYPVVDD-GRLVGIV-------------------TLADIRRVPAE-------- 50 (111)
T ss_pred CCCEEeCCCCcHHHHHHHHHHcCC--CcceEeeC-CeEEEEE-------------------EHHHHHHHHhc--------
Confidence 357789999999999999998888 99999998 9999994 45555431100
Q ss_pred HHHHHHhhhcchhhhhhhhccccCCCCCCCCCCCCCccchhhhccccCCCccccccchhhhhcCCccEEeCCCCcHHHHH
Q 016003 277 RVVKERLKDKGLEGMLEHFDMSSSLMPYLSTSSSSDEESTATSKLTRSGKHSRSMSYSARMVRRAEAIVCHPTSSLMAVM 356 (397)
Q Consensus 277 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~~~~sl~~v~ 356 (397)
.+. + . ....+.|..++.+|.+++++.+++
T Consensus 51 ------------------------~~~-------------~------~--------~~~~~~~~~~~~~v~~~~~~~~~~ 79 (111)
T cd04612 51 ------------------------GRE-------------A------T--------VLVGDVMTRDPVTASPDETLRDAL 79 (111)
T ss_pred ------------------------Ccc-------------c------c--------cCHHHhccCCCeEECCCCCHHHHH
Confidence 000 0 0 001123567889999999999999
Q ss_pred HHHHHcCCcEEEEEcCCCcEEEEEehHHHHHH
Q 016003 357 IQAIAHRVTYVWVIEDDCTLTGIVTFSDLLKV 388 (397)
Q Consensus 357 ~~m~~~~i~rl~VVd~~~~lvGvVt~~DIl~~ 388 (397)
++|.+++.+++||+|++|+++|+||..||+++
T Consensus 80 ~~~~~~~~~~~~V~~~~~~~~G~it~~di~~~ 111 (111)
T cd04612 80 KRMAERDIGRLPVVDDSGRLVGIVSRSDLLRA 111 (111)
T ss_pred HHHHhCCCCeeeEEcCCCCEEEEEEHHHhhhC
Confidence 99999999999999988999999999999863
|
SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase an |
| >cd04800 CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain | Back alignment and domain information |
|---|
Probab=99.29 E-value=4.3e-11 Score=98.10 Aligned_cols=110 Identities=22% Similarity=0.349 Sum_probs=85.8
Q ss_pred cCeEEEeCCCcHHHHHHHHHhcCCCCCEEEEEcCCCcEEEeeccCcccCcchhHHHHHhhcChhhhhhhhccCCCCchhH
Q 016003 197 TDVVAVDYHSPASLALEAISRSLFDQTSVAVVDSDGFLIGEISPSTLGCCDETVAAAITTLSAGDLMAYIDCGGPPEDLV 276 (397)
Q Consensus 197 ~~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~is~~dl~~~~~~~~~~~~~ls~~Dl~~~~~~~~~~~~l~ 276 (397)
+++.+++++.++.+|++.|.+.+. +.+||+|+ |+++|+| +..|++.+....
T Consensus 1 ~~~~~v~~~~~~~~~~~~~~~~~~--~~i~V~~~-~~~~G~v-------------------~~~~l~~~~~~~------- 51 (111)
T cd04800 1 RPPVTCSPDTTIREAARLMTEHRV--SSLLVVDD-GRLVGIV-------------------TDRDLRNRVVAE------- 51 (111)
T ss_pred CCCEEECCCCcHHHHHHHHHHcCC--CeEEEEEC-CEEEEEE-------------------EhHHHHHHHhcc-------
Confidence 357889999999999999998888 99999998 9999995 455555411000
Q ss_pred HHHHHHhhhcchhhhhhhhccccCCCCCCCCCCCCCccchhhhccccCCCccccccchhhhhcCCccEEeCCCCcHHHHH
Q 016003 277 RVVKERLKDKGLEGMLEHFDMSSSLMPYLSTSSSSDEESTATSKLTRSGKHSRSMSYSARMVRRAEAIVCHPTSSLMAVM 356 (397)
Q Consensus 277 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~~~~sl~~v~ 356 (397)
+.. . . .+...++..+++++.+++++.+++
T Consensus 52 ----------~~~------~---------------------------~--------~~i~~~~~~~~~~v~~~~~l~~~~ 80 (111)
T cd04800 52 ----------GLD------P---------------------------D--------TPVSEVMTAPPITIPPDATVFEAL 80 (111)
T ss_pred ----------CCC------c---------------------------c--------CCHHHHhCCCCeEECCCCcHHHHH
Confidence 000 0 0 001123566889999999999999
Q ss_pred HHHHHcCCcEEEEEcCCCcEEEEEehHHHHH
Q 016003 357 IQAIAHRVTYVWVIEDDCTLTGIVTFSDLLK 387 (397)
Q Consensus 357 ~~m~~~~i~rl~VVd~~~~lvGvVt~~DIl~ 387 (397)
++|.+++.+++||+|+ |+++|+||..||++
T Consensus 81 ~~~~~~~~~~~~Vv~~-~~~~Giit~~di~~ 110 (111)
T cd04800 81 LLMLERGIHHLPVVDD-GRLVGVISATDLLR 110 (111)
T ss_pred HHHHHcCCCeeeEeEC-CEEEEEEEHHHhhc
Confidence 9999999999999998 89999999999985
|
Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pa |
| >PRK07107 inosine 5-monophosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.8e-11 Score=127.15 Aligned_cols=107 Identities=12% Similarity=0.099 Sum_probs=86.7
Q ss_pred EEEeCCCcHHHHHHHHHhcCCCCCEEEEEcC---CCcEEEeeccCcccCcchhHHHHHhhcChhhhhhhhccCCCCchhH
Q 016003 200 VAVDYHSPASLALEAISRSLFDQTSVAVVDS---DGFLIGEISPSTLGCCDETVAAAITTLSAGDLMAYIDCGGPPEDLV 276 (397)
Q Consensus 200 ~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~---~g~lvG~is~~dl~~~~~~~~~~~~~ls~~Dl~~~~~~~~~~~~l~ 276 (397)
+++++++++.+|++.|.++++ +++||||+ +|+++|+|| .+|++.....
T Consensus 108 ~tV~pd~tl~eAl~~m~~~~~--~~vpVVD~~~~~gkLvGIVT-------------------~~DLr~~~~~-------- 158 (502)
T PRK07107 108 SNLTPDNTLADVLDLKEKTGH--STVAVTEDGTAHGKLLGIVT-------------------SRDYRISRMS-------- 158 (502)
T ss_pred CEeCCCCcHHHHHHHHHhcCC--CeEEEEeCCCcCCEEEEEEE-------------------cHHhhccccC--------
Confidence 589999999999999999999 99999997 689999965 4444320000
Q ss_pred HHHHHHhhhcchhhhhhhhccccCCCCCCCCCCCCCccchhhhccccCCCccccccchhhhhcCC--ccEEeCCCCcHHH
Q 016003 277 RVVKERLKDKGLEGMLEHFDMSSSLMPYLSTSSSSDEESTATSKLTRSGKHSRSMSYSARMVRRA--EAIVCHPTSSLMA 354 (397)
Q Consensus 277 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~it~~~~~sl~~ 354 (397)
. ..+..++|+. +++++++++++.+
T Consensus 159 -------------------~-----------------------------------~~~V~dIMt~~~~~itv~~d~~l~e 184 (502)
T PRK07107 159 -------------------L-----------------------------------DTKVKDFMTPFEKLVTANEGTTLKE 184 (502)
T ss_pred -------------------C-----------------------------------CCCHHHHhCCCCCeEEECCCCcHHH
Confidence 0 0001124554 7899999999999
Q ss_pred HHHHHHHcCCcEEEEEcCCCcEEEEEehHHHHHHH
Q 016003 355 VMIQAIAHRVTYVWVIEDDCTLTGIVTFSDLLKVF 389 (397)
Q Consensus 355 v~~~m~~~~i~rl~VVd~~~~lvGvVt~~DIl~~l 389 (397)
++++|.++++++|||||++++|+|+||+.||++.-
T Consensus 185 Al~lM~e~~i~~LPVVD~~g~LvGIIT~~Dilk~~ 219 (502)
T PRK07107 185 ANDIIWDHKLNTLPIVDKNGNLVYLVFRKDYDSHK 219 (502)
T ss_pred HHHHHHHcCCCEEEEEcCCCeEEEEEEhHHHHhcc
Confidence 99999999999999999989999999999999864
|
|
| >cd04610 CBS_pair_ParBc_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a ParBc (ParB-like nuclease) domain downstream | Back alignment and domain information |
|---|
Probab=99.29 E-value=4.7e-11 Score=97.08 Aligned_cols=106 Identities=23% Similarity=0.374 Sum_probs=85.3
Q ss_pred cCeEEEeCCCcHHHHHHHHHhcCCCCCEEEEEcCCCcEEEeeccCcccCcchhHHHHHhhcChhhhhhhhccCCCCchhH
Q 016003 197 TDVVAVDYHSPASLALEAISRSLFDQTSVAVVDSDGFLIGEISPSTLGCCDETVAAAITTLSAGDLMAYIDCGGPPEDLV 276 (397)
Q Consensus 197 ~~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~is~~dl~~~~~~~~~~~~~ls~~Dl~~~~~~~~~~~~l~ 276 (397)
++++++..+.++.++++.|...+. +.+||+|+ |+++|+++ ..|++... .
T Consensus 2 ~~~~~v~~~~~~~~~~~~~~~~~~--~~~~v~d~-~~~~g~v~-------------------~~~l~~~~-----~---- 50 (107)
T cd04610 2 RDVITVSPDNTVKDVIKLIKETGH--DGFPVVDN-GKVVGIVS-------------------ARDLLGKD-----P---- 50 (107)
T ss_pred CCcEEECCCCcHHHHHHHHHHcCC--CeeeEeEC-CEEEEEEE-------------------HHHhhccC-----c----
Confidence 567889999999999999988888 89999997 89999954 45544200 0
Q ss_pred HHHHHHhhhcchhhhhhhhccccCCCCCCCCCCCCCccchhhhccccCCCccccccchhhhhcCCccEEeCCCCcHHHHH
Q 016003 277 RVVKERLKDKGLEGMLEHFDMSSSLMPYLSTSSSSDEESTATSKLTRSGKHSRSMSYSARMVRRAEAIVCHPTSSLMAVM 356 (397)
Q Consensus 277 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~~~~sl~~v~ 356 (397)
. .+..++|...+.++.+++++.+++
T Consensus 51 -------------------~------------------------------------~~~~~~~~~~~~~v~~~~~l~~~~ 75 (107)
T cd04610 51 -------------------D------------------------------------ETVEEIMSKDLVVAVPEMDIMDAA 75 (107)
T ss_pred -------------------c------------------------------------ccHHHhCCCCCeEECCCCCHHHHH
Confidence 0 000123455778999999999999
Q ss_pred HHHHHcCCcEEEEEcCCCcEEEEEehHHHHHH
Q 016003 357 IQAIAHRVTYVWVIEDDCTLTGIVTFSDLLKV 388 (397)
Q Consensus 357 ~~m~~~~i~rl~VVd~~~~lvGvVt~~DIl~~ 388 (397)
+.|.+++.+++||+|++|+++|+|+..||+++
T Consensus 76 ~~~~~~~~~~~~Vv~~~g~~~Gvi~~~di~~~ 107 (107)
T cd04610 76 RVMFRTGISKLPVVDENNNLVGIITNTDVIRS 107 (107)
T ss_pred HHHHHhCCCeEeEECCCCeEEEEEEHHHhhcC
Confidence 99999999999999998999999999999863
|
CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. |
| >cd04636 CBS_pair_23 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=99.29 E-value=3.9e-11 Score=102.08 Aligned_cols=131 Identities=20% Similarity=0.229 Sum_probs=88.5
Q ss_pred CeEEEeCCCcHHHHHHHHHhcCCCCCEEEEEcCCCcEEEeeccCcccCcchhHHHHHhhcChhhhhhhhccCCCCchhHH
Q 016003 198 DVVAVDYHSPASLALEAISRSLFDQTSVAVVDSDGFLIGEISPSTLGCCDETVAAAITTLSAGDLMAYIDCGGPPEDLVR 277 (397)
Q Consensus 198 ~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~is~~dl~~~~~~~~~~~~~ls~~Dl~~~~~~~~~~~~l~~ 277 (397)
+++++++++++.+|++.|.+.++ +++||+|++|+++|+|+..||.+ ............
T Consensus 2 ~~~~v~~~~~l~~~~~~~~~~~~--~~~~V~d~~~~~~G~i~~~~l~~-------------------~~~~~~~~~~~~- 59 (132)
T cd04636 2 DVITVKKDDTLRDVVEILLTGKI--SGVPVVDNEGRVVGIVSEGDLIR-------------------KIYKGKGLFYVT- 59 (132)
T ss_pred CCeEeCCCCcHHHHHHHHHHhCC--CccceECCCCCEEEEEeHHHHHH-------------------HHhccCCccccc-
Confidence 57789999999999999998888 99999999999999966444433 221000000000
Q ss_pred HHHHHhhhcchhhhhhhhccccCCCCCCCCCCCCCccchhhhccccCCCccccccchhhhhcCCccEEeCCCCcHHHHHH
Q 016003 278 VVKERLKDKGLEGMLEHFDMSSSLMPYLSTSSSSDEESTATSKLTRSGKHSRSMSYSARMVRRAEAIVCHPTSSLMAVMI 357 (397)
Q Consensus 278 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~~~~sl~~v~~ 357 (397)
+.... .+. . . +.. . .+. ......+|..+++++.+++++.+++.
T Consensus 60 ---------~~~~~--~~~---------------~--~-~~~---~--~~~---~~~v~~~~~~~~~~v~~~~~l~~~~~ 102 (132)
T cd04636 60 ---------LLYSV--IFL---------------D--E-SKI---K--KLL---GKKVEEIMTKKVITVDEDTTIEDVAR 102 (132)
T ss_pred ---------ccccc--ccc---------------c--h-HHH---H--HHc---CCCHHHhccCCceEECCCCcHHHHHH
Confidence 00000 000 0 0 000 0 000 01122346678899999999999999
Q ss_pred HHHHcCCcEEEEEcCCCcEEEEEehHHHHHH
Q 016003 358 QAIAHRVTYVWVIEDDCTLTGIVTFSDLLKV 388 (397)
Q Consensus 358 ~m~~~~i~rl~VVd~~~~lvGvVt~~DIl~~ 388 (397)
.|.+++.+++||+|+ |+++|+||..|++++
T Consensus 103 ~~~~~~~~~~~V~~~-~~~iGvit~~dl~~~ 132 (132)
T cd04636 103 IMSKKNIKRLPVVDD-GKLVGIISRGDIIRS 132 (132)
T ss_pred HHHHCCCCeeEEEEC-CEEEEEEEHHHhhcC
Confidence 999999999999998 999999999999863
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener |
| >PLN02274 inosine-5'-monophosphate dehydrogenase | Back alignment and domain information |
|---|
Probab=99.29 E-value=2.8e-11 Score=125.91 Aligned_cols=113 Identities=19% Similarity=0.132 Sum_probs=92.2
Q ss_pred CCcCeEEEeCCCcHHHHHHHHHhcCCCCCEEEEEcC---CCcEEEeeccCcccCcchhHHHHHhhcChhhhhhhhccCCC
Q 016003 195 ISTDVVAVDYHSPASLALEAISRSLFDQTSVAVVDS---DGFLIGEISPSTLGCCDETVAAAITTLSAGDLMAYIDCGGP 271 (397)
Q Consensus 195 ~~~~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~---~g~lvG~is~~dl~~~~~~~~~~~~~ls~~Dl~~~~~~~~~ 271 (397)
|.++++++.+++++.+|+++|.++++ +++||+|+ +|+++|+|| .+|++...+.
T Consensus 106 mi~dpvtV~pd~tV~dA~~lm~~~~~--~~lpVvD~~~~~GklvGIVT-------------------~~DL~~v~~~--- 161 (505)
T PLN02274 106 FVSDPVVKSPSSTISSLDELKASRGF--SSVCVTETGTMGSKLLGYVT-------------------KRDWDFVNDR--- 161 (505)
T ss_pred ccCCCeeeCCCCcHHHHHHHHHhcCC--ceEEEEeCCCcCCeEEEEEE-------------------HHHHhhcccc---
Confidence 56889999999999999999999999 99999997 489999954 5555421000
Q ss_pred CchhHHHHHHHhhhcchhhhhhhhccccCCCCCCCCCCCCCccchhhhccccCCCccccccchhhhhcCCc--cEEeCCC
Q 016003 272 PEDLVRVVKERLKDKGLEGMLEHFDMSSSLMPYLSTSSSSDEESTATSKLTRSGKHSRSMSYSARMVRRAE--AIVCHPT 349 (397)
Q Consensus 272 ~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~it~~~~ 349 (397)
. .+..++|+.+ ++++.++
T Consensus 162 ------------------------~------------------------------------~~V~eIMt~~~~lvtv~~~ 181 (505)
T PLN02274 162 ------------------------E------------------------------------TKLSEVMTSDDDLVTAPAG 181 (505)
T ss_pred ------------------------C------------------------------------CcHHHHhccCCCcEEECCC
Confidence 0 0001235544 8999999
Q ss_pred CcHHHHHHHHHHcCCcEEEEEcCCCcEEEEEehHHHHHHHHH
Q 016003 350 SSLMAVMIQAIAHRVTYVWVIEDDCTLTGIVTFSDLLKVFRK 391 (397)
Q Consensus 350 ~sl~~v~~~m~~~~i~rl~VVd~~~~lvGvVt~~DIl~~l~~ 391 (397)
+++.++++.|.+++++++||||++++++|+||+.||++.+..
T Consensus 182 ~sL~eAl~~m~~~~~~~LPVVD~~g~LvGvITr~DIlk~~~~ 223 (505)
T PLN02274 182 IDLEEAEAVLKDSKKGKLPLVNEDGELVDLVTRTDVKRVKGY 223 (505)
T ss_pred CCHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHHHhhC
Confidence 999999999999999999999998999999999999998753
|
|
| >TIGR00400 mgtE Mg2+ transporter (mgtE) | Back alignment and domain information |
|---|
Probab=99.29 E-value=4e-11 Score=123.63 Aligned_cols=123 Identities=20% Similarity=0.208 Sum_probs=99.8
Q ss_pred CccCCccccCCCCcCeEEEeCCCcHHHHHHHHHh-----cCCCCCEEEEEcCCCcEEEeeccCcccCcchhHHHHHhhcC
Q 016003 184 IPALSIDSLGIISTDVVAVDYHSPASLALEAISR-----SLFDQTSVAVVDSDGFLIGEISPSTLGCCDETVAAAITTLS 258 (397)
Q Consensus 184 l~~~ti~~L~~~~~~v~tv~~~~~~~~a~~~m~~-----~~i~~s~vpVVd~~g~lvG~is~~dl~~~~~~~~~~~~~ls 258 (397)
++..++++ +|++++++++++.++.+|++.|++ +++ ..++|+|++|+++|+| +
T Consensus 128 ~~e~tvg~--iMt~~~~~v~~~~tv~eal~~l~~~~~~~~~~--~~v~Vvd~~~~l~GvV-------------------~ 184 (449)
T TIGR00400 128 YSDDSAGR--IMTIEYVELKEDYTVGKALDYIRRVAKTKEDI--YTLYVTNESKHLKGVL-------------------S 184 (449)
T ss_pred CCcchHHH--hCcCceEEECCCCcHHHHHHHHHhcCCCccce--eEEEEECCCCeEEEEE-------------------E
Confidence 45566766 799999999999999999999975 445 7899999999999994 4
Q ss_pred hhhhhhhhccCCCCchhHHHHHHHhhhcchhhhhhhhccccCCCCCCCCCCCCCccchhhhccccCCCccccccchhhhh
Q 016003 259 AGDLMAYIDCGGPPEDLVRVVKERLKDKGLEGMLEHFDMSSSLMPYLSTSSSSDEESTATSKLTRSGKHSRSMSYSARMV 338 (397)
Q Consensus 259 ~~Dl~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (397)
.+|++..- + + .....+
T Consensus 185 l~dLl~a~----~---------------------------------------------~---------------~~v~~i 200 (449)
T TIGR00400 185 IRDLILAK----P---------------------------------------------E---------------EILSSI 200 (449)
T ss_pred HHHHhcCC----C---------------------------------------------C---------------CcHHHH
Confidence 55554200 0 0 001134
Q ss_pred cCCccEEeCCCCcHHHHHHHHHHcCCcEEEEEcCCCcEEEEEehHHHHHHHHHHH
Q 016003 339 RRAEAIVCHPTSSLMAVMIQAIAHRVTYVWVIEDDCTLTGIVTFSDLLKVFRKHL 393 (397)
Q Consensus 339 ~~~~~it~~~~~sl~~v~~~m~~~~i~rl~VVd~~~~lvGvVt~~DIl~~l~~~~ 393 (397)
|.++++++++++++.++++.|.+++++.+||||++|+++|+||..|+++.+.++.
T Consensus 201 m~~~~~~v~~~~~~~eal~~m~~~~~~~lpVVD~~g~lvGiIt~~Dil~~l~~~~ 255 (449)
T TIGR00400 201 MRSSVFSIVGVNDQEEVARLIQKYDFLAVPVVDNEGRLVGIVTVDDIIDVIQSEA 255 (449)
T ss_pred hCCCCeeECCCCCHHHHHHHHHHcCCCEEeEEcCCCeEEEEEEHHHHHHHHHhhh
Confidence 6678899999999999999999999999999999999999999999999997753
|
This family of prokaryotic proteins models a class of Mg++ transporter first described in Bacillus firmus. May form a homodimer. |
| >cd04595 CBS_pair_DHH_polyA_Pol_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with an upstream DHH domain which performs a phosphoesterase function and a downstream polyA polymerase domain | Back alignment and domain information |
|---|
Probab=99.28 E-value=6.7e-11 Score=96.91 Aligned_cols=108 Identities=27% Similarity=0.307 Sum_probs=85.9
Q ss_pred cCeEEEeCCCcHHHHHHHHHhcCCCCCEEEEEcCCCcEEEeeccCcccCcchhHHHHHhhcChhhhhhhhccCCCCchhH
Q 016003 197 TDVVAVDYHSPASLALEAISRSLFDQTSVAVVDSDGFLIGEISPSTLGCCDETVAAAITTLSAGDLMAYIDCGGPPEDLV 276 (397)
Q Consensus 197 ~~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~is~~dl~~~~~~~~~~~~~ls~~Dl~~~~~~~~~~~~l~ 276 (397)
+++.++.++.++.+|++.|.+.+. +.+||+|+ |+++|++ +..|++.....
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~V~d~-~~~~G~v-------------------~~~dl~~~~~~-------- 51 (110)
T cd04595 2 SPVKTVRPEATIEEARELLLRYGH--TALPVVEG-GRVVGII-------------------SRRDVEKALRH-------- 51 (110)
T ss_pred CCceEeCCCCcHHHHHHHHHHcCC--CeeeEeeC-CEEEEEE-------------------EHHHHHHHHhc--------
Confidence 467889999999999999998888 99999998 9999994 45555542110
Q ss_pred HHHHHHhhhcchhhhhhhhccccCCCCCCCCCCCCCccchhhhccccCCCccccccchhhhhcCCccEEeCCCCcHHHHH
Q 016003 277 RVVKERLKDKGLEGMLEHFDMSSSLMPYLSTSSSSDEESTATSKLTRSGKHSRSMSYSARMVRRAEAIVCHPTSSLMAVM 356 (397)
Q Consensus 277 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~~~~sl~~v~ 356 (397)
.++ ..+...+|..+++++.+++++.+++
T Consensus 52 ------------------------~~~----------------------------~~~~~~~~~~~~~~v~~~~~l~~~~ 79 (110)
T cd04595 52 ------------------------GLG----------------------------HAPVKDYMSTDVVTVPPDTPLSEVQ 79 (110)
T ss_pred ------------------------ccc----------------------------cCcHHHHhcCCCEEECCCCcHHHHH
Confidence 000 0001123566889999999999999
Q ss_pred HHHHHcCCcEEEEEcCCCcEEEEEehHHHHH
Q 016003 357 IQAIAHRVTYVWVIEDDCTLTGIVTFSDLLK 387 (397)
Q Consensus 357 ~~m~~~~i~rl~VVd~~~~lvGvVt~~DIl~ 387 (397)
.+|.+++.+++||+| +|+++|+||+.||++
T Consensus 80 ~~~~~~~~~~~~V~~-~~~~~Gvvt~~di~~ 109 (110)
T cd04595 80 ELMVEHDIGRVPVVE-DGRLVGIVTRTDLLR 109 (110)
T ss_pred HHHHHcCCCeeEEEe-CCEEEEEEEhHHhhc
Confidence 999999999999999 689999999999985
|
CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. |
| >cd04602 CBS_pair_IMPDH_2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein | Back alignment and domain information |
|---|
Probab=99.28 E-value=3.9e-11 Score=99.30 Aligned_cols=106 Identities=20% Similarity=0.213 Sum_probs=81.5
Q ss_pred CeEEEeCCCcHHHHHHHHHhcCCCCCEEEEEcC---CCcEEEeeccCcccCcchhHHHHHhhcChhhhhhhhccCCCCch
Q 016003 198 DVVAVDYHSPASLALEAISRSLFDQTSVAVVDS---DGFLIGEISPSTLGCCDETVAAAITTLSAGDLMAYIDCGGPPED 274 (397)
Q Consensus 198 ~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~---~g~lvG~is~~dl~~~~~~~~~~~~~ls~~Dl~~~~~~~~~~~~ 274 (397)
++.++.+++++.+|++.|.+.++ +.+||+|+ +|+++|+++ ..|++.....
T Consensus 3 ~~~~i~~~~~~~~~~~~~~~~~~--~~~~V~d~~~~~~~~~G~v~-------------------~~dl~~~~~~------ 55 (114)
T cd04602 3 DPSVLSPDHTVADVLEIKEKKGF--SGIPVTEDGKSGGKLLGIVT-------------------SRDIDFLTDS------ 55 (114)
T ss_pred CCeEcCCCCCHHHHHHHHHHcCC--CceEEeeCCCcCCEEEEEEE-------------------hHHhhhhhcc------
Confidence 46788999999999999998888 99999997 789999954 4444320000
Q ss_pred hHHHHHHHhhhcchhhhhhhhccccCCCCCCCCCCCCCccchhhhccccCCCccccccchhhhhcCCccEEeCC--CCcH
Q 016003 275 LVRVVKERLKDKGLEGMLEHFDMSSSLMPYLSTSSSSDEESTATSKLTRSGKHSRSMSYSARMVRRAEAIVCHP--TSSL 352 (397)
Q Consensus 275 l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~~--~~sl 352 (397)
. . . ...+|..+..++.+ ++++
T Consensus 56 ------------~--------------~-----------------------~--------v~~~~~~~~~~~~~~~~~~l 78 (114)
T cd04602 56 ------------E--------------T-----------------------P--------LSEVMTPREVLVVAPTGITL 78 (114)
T ss_pred ------------C--------------C-----------------------C--------HHHhcCCCceEEECCCCCCH
Confidence 0 0 0 00123444455544 9999
Q ss_pred HHHHHHHHHcCCcEEEEEcCCCcEEEEEehHHHHH
Q 016003 353 MAVMIQAIAHRVTYVWVIEDDCTLTGIVTFSDLLK 387 (397)
Q Consensus 353 ~~v~~~m~~~~i~rl~VVd~~~~lvGvVt~~DIl~ 387 (397)
.++++.|.+++.+++||+|++|+++|+||..||++
T Consensus 79 ~~~l~~~~~~~~~~~pVv~~~~~~~Gvit~~di~~ 113 (114)
T cd04602 79 EEANEILRESKKGKLPIVNDDGELVALVTRSDLKK 113 (114)
T ss_pred HHHHHHHHhcCCCceeEECCCCeEEEEEEHHHhhc
Confidence 99999999999999999999899999999999975
|
IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentos |
| >cd04637 CBS_pair_24 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=99.27 E-value=6e-11 Score=99.04 Aligned_cols=121 Identities=22% Similarity=0.290 Sum_probs=87.6
Q ss_pred CeEEEeCCCcHHHHHHHHHhcCCCCCEEEEEcCCCcEEEeeccCcccCcchhHHHHHhhcChhhhhhhhccCCCCchhHH
Q 016003 198 DVVAVDYHSPASLALEAISRSLFDQTSVAVVDSDGFLIGEISPSTLGCCDETVAAAITTLSAGDLMAYIDCGGPPEDLVR 277 (397)
Q Consensus 198 ~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~is~~dl~~~~~~~~~~~~~ls~~Dl~~~~~~~~~~~~l~~ 277 (397)
+++++.++.++.+|++.|.+.++ +.+||+|+ |+++|+++ ..|++.....
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~V~d~-~~~~G~v~-------------------~~~l~~~~~~--------- 50 (122)
T cd04637 2 RVVTVEMDDRLEEVREIFEKHKF--HHLLVVED-NELVGVIS-------------------DRDYLKAISP--------- 50 (122)
T ss_pred CceEeCCCCCHHHHHHHHHhCCC--CEEEEEeC-CeEEEEEE-------------------HHHHHHHHHH---------
Confidence 57889999999999999999988 99999997 89999955 5555432110
Q ss_pred HHHHHhhhcchhhhhhhhccccCCCCCCCCCCCCCccchhhhccccCCCccccccchhhhhcCCccEEeCCCCcHHHHHH
Q 016003 278 VVKERLKDKGLEGMLEHFDMSSSLMPYLSTSSSSDEESTATSKLTRSGKHSRSMSYSARMVRRAEAIVCHPTSSLMAVMI 357 (397)
Q Consensus 278 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~~~~sl~~v~~ 357 (397)
.+.. .-+.. .++. . . ......+|..+++++.+++++.++++
T Consensus 51 ----~~~~-~~~~~-------------------------~~~~--~---~----~~~~~~~~~~~~~~v~~~~~l~~~~~ 91 (122)
T cd04637 51 ----FLGT-AGETE-------------------------KDLA--T---L----NRRAHQIMTRDPITVSPDTPVDEASK 91 (122)
T ss_pred ----Hhcc-ccchH-------------------------HHHH--H---H----HhHHHHhhcCCCeeeCCCCcHHHHHH
Confidence 0000 00000 0000 0 0 00012235668999999999999999
Q ss_pred HHHHcCCcEEEEEcCCCcEEEEEehHHHHHH
Q 016003 358 QAIAHRVTYVWVIEDDCTLTGIVTFSDLLKV 388 (397)
Q Consensus 358 ~m~~~~i~rl~VVd~~~~lvGvVt~~DIl~~ 388 (397)
.|.+++.+++||+|++|+++|++|+.|++++
T Consensus 92 ~~~~~~~~~~~vv~~~~~~~Gvit~~dll~~ 122 (122)
T cd04637 92 LLLENSISCLPVVDENGQLIGIITWKDLLKY 122 (122)
T ss_pred HHHHcCCCeEeEECCCCCEEEEEEHHHhhhC
Confidence 9999999999999998999999999999874
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener |
| >cd04611 CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with a PAS domain, a GGDEF (DiGuanylate-Cyclase (DGC) domain, and a DUF1 domain downstream | Back alignment and domain information |
|---|
Probab=99.27 E-value=7.4e-11 Score=96.40 Aligned_cols=109 Identities=19% Similarity=0.295 Sum_probs=86.5
Q ss_pred CeEEEeCCCcHHHHHHHHHhcCCCCCEEEEEcCCCcEEEeeccCcccCcchhHHHHHhhcChhhhhhhhccCCCCchhHH
Q 016003 198 DVVAVDYHSPASLALEAISRSLFDQTSVAVVDSDGFLIGEISPSTLGCCDETVAAAITTLSAGDLMAYIDCGGPPEDLVR 277 (397)
Q Consensus 198 ~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~is~~dl~~~~~~~~~~~~~ls~~Dl~~~~~~~~~~~~l~~ 277 (397)
++.++.++.++.+|++.|.+.+. ..+||+|+ |+++|+ ++.+|++.+....
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~V~~~-~~~~G~-------------------v~~~~l~~~~~~~-------- 51 (111)
T cd04611 2 QILTCPPDTSLAEAASRMRERRI--SSIVVVDD-GRPLGI-------------------VTERDILRLLASG-------- 51 (111)
T ss_pred CceEECCCCcHHHHHHHHHHcCC--CEEEEeeC-CEEEEE-------------------EeHHHHHHHHhcC--------
Confidence 46789999999999999998888 99999987 899999 5566665422100
Q ss_pred HHHHHhhhcchhhhhhhhccccCCCCCCCCCCCCCccchhhhccccCCCccccccchhhhhcCCccEEeCCCCcHHHHHH
Q 016003 278 VVKERLKDKGLEGMLEHFDMSSSLMPYLSTSSSSDEESTATSKLTRSGKHSRSMSYSARMVRRAEAIVCHPTSSLMAVMI 357 (397)
Q Consensus 278 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~~~~sl~~v~~ 357 (397)
.. . .......|..+++++.+++++.++++
T Consensus 52 ----------~~------~-----------------------------------~~~v~~~~~~~~~~~~~~~~l~~~l~ 80 (111)
T cd04611 52 ----------PD------L-----------------------------------QTPVGEVMSSPLLTVPADTSLYDARQ 80 (111)
T ss_pred ----------CC------C-----------------------------------CcCHHHhcCCCceEECCCCCHHHHHH
Confidence 00 0 00011235668899999999999999
Q ss_pred HHHHcCCcEEEEEcCCCcEEEEEehHHHHH
Q 016003 358 QAIAHRVTYVWVIEDDCTLTGIVTFSDLLK 387 (397)
Q Consensus 358 ~m~~~~i~rl~VVd~~~~lvGvVt~~DIl~ 387 (397)
.|.+++.+.+||+|++|+++|+||..||++
T Consensus 81 ~~~~~~~~~~~Vv~~~~~~~Gvi~~~di~~ 110 (111)
T cd04611 81 LMREHGIRHLVVVDDDGELLGLLSQTDLLQ 110 (111)
T ss_pred HHHHcCCeEEEEECCCCcEEEEEEhHHhhc
Confidence 999999999999999899999999999986
|
PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CB |
| >cd04622 CBS_pair_9 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=99.27 E-value=5.7e-11 Score=97.52 Aligned_cols=111 Identities=20% Similarity=0.261 Sum_probs=86.2
Q ss_pred cCeEEEeCCCcHHHHHHHHHhcCCCCCEEEEEcCCCcEEEeeccCcccCcchhHHHHHhhcChhhhhh-hhccCCCCchh
Q 016003 197 TDVVAVDYHSPASLALEAISRSLFDQTSVAVVDSDGFLIGEISPSTLGCCDETVAAAITTLSAGDLMA-YIDCGGPPEDL 275 (397)
Q Consensus 197 ~~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~is~~dl~~~~~~~~~~~~~ls~~Dl~~-~~~~~~~~~~l 275 (397)
+++.++.+++++.+|++.|.+.+. +.+||+|+ |+++|.|+ ..|++. ....
T Consensus 1 ~~~~~v~~~~~~~~~~~~~~~~~~--~~~~v~~~-~~~~G~i~-------------------~~~l~~~~~~~------- 51 (113)
T cd04622 1 RDVVTVSPDDTIREAARLMREHDV--GALPVCEN-DRLVGIVT-------------------DRDIVVRAVAE------- 51 (113)
T ss_pred CCCEEECCCCcHHHHHHHHHHcCC--CEEEEeeC-CEEEEEEE-------------------hHHHHHHHhhc-------
Confidence 357889999999999999999888 99999998 99999955 444432 0000
Q ss_pred HHHHHHHhhhcchhhhhhhhccccCCCCCCCCCCCCCccchhhhccccCCCccccccchhhhhcCCccEEeCCCCcHHHH
Q 016003 276 VRVVKERLKDKGLEGMLEHFDMSSSLMPYLSTSSSSDEESTATSKLTRSGKHSRSMSYSARMVRRAEAIVCHPTSSLMAV 355 (397)
Q Consensus 276 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~~~~sl~~v 355 (397)
+.. . .. .+...+|...+.++.+++++.++
T Consensus 52 -----------~~~------------~--------------------~~--------~~~~~~~~~~~~~v~~~~~~~~~ 80 (113)
T cd04622 52 -----------GRD------------P--------------------DT--------TTVGDVMTRGVVTVTEDDDVDEA 80 (113)
T ss_pred -----------cCC------------c--------------------cc--------CCHHHhccCCccEECCCCCHHHH
Confidence 000 0 00 00112456688999999999999
Q ss_pred HHHHHHcCCcEEEEEcCCCcEEEEEehHHHHH
Q 016003 356 MIQAIAHRVTYVWVIEDDCTLTGIVTFSDLLK 387 (397)
Q Consensus 356 ~~~m~~~~i~rl~VVd~~~~lvGvVt~~DIl~ 387 (397)
++.|.+++.+++||+|++|+++|+||..|+++
T Consensus 81 ~~~~~~~~~~~~~V~~~~~~~~G~it~~di~~ 112 (113)
T cd04622 81 ARLMREHQVRRLPVVDDDGRLVGIVSLGDLAR 112 (113)
T ss_pred HHHHHHcCCCeeeEECCCCcEEEEEEHHHhhc
Confidence 99999999999999998899999999999986
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera |
| >cd04633 CBS_pair_20 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=99.27 E-value=4.8e-11 Score=99.36 Aligned_cols=120 Identities=19% Similarity=0.208 Sum_probs=86.4
Q ss_pred CeEEEeCCCcHHHHHHHHHhcCCCCCEEEEEcCCCcEEEeeccCcccCcchhHHHHHhhcChhhhhhhhccCCCCchhHH
Q 016003 198 DVVAVDYHSPASLALEAISRSLFDQTSVAVVDSDGFLIGEISPSTLGCCDETVAAAITTLSAGDLMAYIDCGGPPEDLVR 277 (397)
Q Consensus 198 ~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~is~~dl~~~~~~~~~~~~~ls~~Dl~~~~~~~~~~~~l~~ 277 (397)
+++++.+++++.+|++.|.+.++ .++||+|+ |+++|+++. .|++......
T Consensus 2 ~~~~i~~~~~~~~~~~~l~~~~~--~~i~V~~~-~~~~G~v~~-------------------~~l~~~~~~~-------- 51 (121)
T cd04633 2 PVITVSPDDRVSHARRLMLDHDI--SRLPVIEG-GKLVGIVTE-------------------KDIADALRSF-------- 51 (121)
T ss_pred CCEEECCCCcHHHHHHHHHHcCC--CeeEEEEC-CEEEEEEch-------------------HHHHHhhhhh--------
Confidence 57789999999999999998888 99999997 999999654 4444311100
Q ss_pred HHHHHhhhcchhhhhhhhccccCCCCCCCCCCCCCccchhhhccccCCCccccccchhhhhcCCccEEeCCCCcHHHHHH
Q 016003 278 VVKERLKDKGLEGMLEHFDMSSSLMPYLSTSSSSDEESTATSKLTRSGKHSRSMSYSARMVRRAEAIVCHPTSSLMAVMI 357 (397)
Q Consensus 278 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~~~~sl~~v~~ 357 (397)
. ...+ ... . . .. +. ..+....|..+.++|.+++++.+++.
T Consensus 52 ----~-----~~~~---~~~--~-~--------------~~--------~~---~~~~~~~~~~~~~~v~~~~~l~~~~~ 91 (121)
T cd04633 52 ----R-----PLVR---DRH--Q-E--------------RR--------IR---NLPVSDIMTRPVITIEPDTSVSDVAS 91 (121)
T ss_pred ----h-----hccc---chh--h-h--------------hh--------hh---ccCHHHHccCCceEECCCCcHHHHHH
Confidence 0 0000 000 0 0 00 00 00112245678999999999999999
Q ss_pred HHHHcCCcEEEEEcCCCcEEEEEehHHHHHH
Q 016003 358 QAIAHRVTYVWVIEDDCTLTGIVTFSDLLKV 388 (397)
Q Consensus 358 ~m~~~~i~rl~VVd~~~~lvGvVt~~DIl~~ 388 (397)
+|.+++.+++||+|+ |+++|+||..|++++
T Consensus 92 ~~~~~~~~~~~Vv~~-~~~~Gvi~~~dl~~~ 121 (121)
T cd04633 92 LMLENNIGGLPVVDD-GKLVGIVTRTDILRY 121 (121)
T ss_pred HHHHcCCCcccEEEC-CEEEEEEEHHHhhcC
Confidence 999999999999998 899999999999863
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener |
| >TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=99.26 E-value=4.4e-11 Score=123.50 Aligned_cols=112 Identities=15% Similarity=0.164 Sum_probs=92.8
Q ss_pred CCCcCeEEEeCCCcHHHHHHHHHhcCCCCCEEEEEcCCCcEEEeeccCcccCcchhHHHHHhhcChhhhhhhhccCCCCc
Q 016003 194 IISTDVVAVDYHSPASLALEAISRSLFDQTSVAVVDSDGFLIGEISPSTLGCCDETVAAAITTLSAGDLMAYIDCGGPPE 273 (397)
Q Consensus 194 ~~~~~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~is~~dl~~~~~~~~~~~~~ls~~Dl~~~~~~~~~~~ 273 (397)
+|.++++++.+++++.+|+++|.++++ +.+||+|+ ++++|+| +.+|++.. +.
T Consensus 93 im~~~pvtv~p~~tI~eA~~lm~~~~~--~~~vVvD~-gklvGIV-------------------T~rDL~~~-~~----- 144 (475)
T TIGR01303 93 LVLDTPITLAPHDTVSDAMALIHKRAH--GAAVVILE-DRPVGLV-------------------TDSDLLGV-DR----- 144 (475)
T ss_pred ccccCCeEECCCCCHHHHHHHHHhcCC--eEEEEEEC-CEEEEEE-------------------EHHHhhcC-CC-----
Confidence 577889999999999999999999988 99999985 7999995 45555320 00
Q ss_pred hhHHHHHHHhhhcchhhhhhhhccccCCCCCCCCCCCCCccchhhhccccCCCccccccchhhhhcCCccEEeCCCCcHH
Q 016003 274 DLVRVVKERLKDKGLEGMLEHFDMSSSLMPYLSTSSSSDEESTATSKLTRSGKHSRSMSYSARMVRRAEAIVCHPTSSLM 353 (397)
Q Consensus 274 ~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~~~~sl~ 353 (397)
... ..++|+.+++++.+++++.
T Consensus 145 --------------------------------------------------~~~--------V~dIMt~~litv~~~~sL~ 166 (475)
T TIGR01303 145 --------------------------------------------------FTQ--------VRDIMSTDLVTAPADTEPR 166 (475)
T ss_pred --------------------------------------------------CCC--------HHHHccCCceEeCCCCcHH
Confidence 000 1134778999999999999
Q ss_pred HHHHHHHHcCCcEEEEEcCCCcEEEEEehHHHHHHHHH
Q 016003 354 AVMIQAIAHRVTYVWVIEDDCTLTGIVTFSDLLKVFRK 391 (397)
Q Consensus 354 ~v~~~m~~~~i~rl~VVd~~~~lvGvVt~~DIl~~l~~ 391 (397)
+++.+|.+++++++||||++|+++|+||.+||++....
T Consensus 167 eAl~lM~~~~i~~LPVVD~~g~LvGIIT~~DLl~~~~~ 204 (475)
T TIGR01303 167 KAFDLLEHAPRDVAPLVDADGTLAGILTRTGALRATIY 204 (475)
T ss_pred HHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHHHHhC
Confidence 99999999999999999988999999999999997654
|
This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302. |
| >TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase | Back alignment and domain information |
|---|
Probab=99.26 E-value=7.4e-11 Score=121.59 Aligned_cols=113 Identities=23% Similarity=0.299 Sum_probs=93.1
Q ss_pred CCCcCeEEEeCCCcHHHHHHHHHhcCCCCCEEEEEcCC---CcEEEeeccCcccCcchhHHHHHhhcChhhhhhhhccCC
Q 016003 194 IISTDVVAVDYHSPASLALEAISRSLFDQTSVAVVDSD---GFLIGEISPSTLGCCDETVAAAITTLSAGDLMAYIDCGG 270 (397)
Q Consensus 194 ~~~~~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~---g~lvG~is~~dl~~~~~~~~~~~~~ls~~Dl~~~~~~~~ 270 (397)
.|.++++++.+++++.+|+++|.++++ +++||+|++ ++++|+|+ .+|++...+.
T Consensus 85 ~~~~~~vtl~~~~tv~eal~~m~~~~~--s~lpVvd~~~~~~~lvGIVt-------------------~rDL~~~~~~-- 141 (450)
T TIGR01302 85 GIISDPVTISPETTVADVLELMERKGI--SGIPVVEDGDMTGKLVGIIT-------------------KRDIRFVKDK-- 141 (450)
T ss_pred ceecCceEeCCCCCHHHHHHHHHHcCC--CEEEEEeCCCCCCeEEEEEE-------------------HHHHhhhhcC--
Confidence 566789999999999999999999999 999999988 79999954 5555420000
Q ss_pred CCchhHHHHHHHhhhcchhhhhhhhccccCCCCCCCCCCCCCccchhhhccccCCCccccccchhhhhcC-CccEEeCCC
Q 016003 271 PPEDLVRVVKERLKDKGLEGMLEHFDMSSSLMPYLSTSSSSDEESTATSKLTRSGKHSRSMSYSARMVRR-AEAIVCHPT 349 (397)
Q Consensus 271 ~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~it~~~~ 349 (397)
. .. ...+|. .+++++.++
T Consensus 142 -------------------------~----------------------------~~--------V~dvm~~~~~~~V~~~ 160 (450)
T TIGR01302 142 -------------------------G----------------------------KP--------VSEVMTREEVITVPEG 160 (450)
T ss_pred -------------------------C----------------------------CC--------HHHhhCCCCCEEECCC
Confidence 0 00 012355 489999999
Q ss_pred CcHHHHHHHHHHcCCcEEEEEcCCCcEEEEEehHHHHHHHH
Q 016003 350 SSLMAVMIQAIAHRVTYVWVIEDDCTLTGIVTFSDLLKVFR 390 (397)
Q Consensus 350 ~sl~~v~~~m~~~~i~rl~VVd~~~~lvGvVt~~DIl~~l~ 390 (397)
+++.++++.|.+++++++||||++|+++|+||+.||++.+.
T Consensus 161 ~sl~eal~~m~~~~~~~lpVVDe~G~lvGiVT~~DIl~~~~ 201 (450)
T TIGR01302 161 IDLEEALKVLHEHRIEKLPVVDKNGELVGLITMKDIVKRRK 201 (450)
T ss_pred CcHHHHHHHHHHcCCCeEEEEcCCCcEEEEEEhHHhhhccc
Confidence 99999999999999999999999999999999999998763
|
This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models. |
| >PRK10892 D-arabinose 5-phosphate isomerase; Provisional | Back alignment and domain information |
|---|
Probab=99.26 E-value=7.4e-11 Score=116.62 Aligned_cols=123 Identities=17% Similarity=0.176 Sum_probs=101.0
Q ss_pred ccchhhhhhcCCCCeEEEeCChhHHHHHHHHhhCCCceEEEEccCCCCCCCCCCCCCCCeEEEEEehhHHHHHHhhcCCC
Q 016003 6 LADEVSDLCLGKPALRALSISAAIADALSALKNSDESFISVWDCNCCSNHRKLGDACECQCVGKVCMVDVICYLCKDSNS 85 (397)
Q Consensus 6 ~~~~v~dl~~~k~~li~v~~~~tv~~Al~~L~~~~I~s~PV~d~~~~~~~~~~~~~~~~~~vGiv~~~Dil~~l~~~~~l 85 (397)
...+|+|+|...++++++++++|+.+|++.|.++++..+||+|. +++++|+|+..|+.+.+..+..
T Consensus 200 ~~~~V~dim~~~~~~~~v~~~~sl~~a~~~~~~~~~~~~vVvd~-------------~g~lvGivt~~Dl~~~~~~~~~- 265 (326)
T PRK10892 200 LLLRVSDIMHTGDEIPHVSKTASLRDALLEITRKNLGMTVICDD-------------NMKIEGIFTDGDLRRVFDMGID- 265 (326)
T ss_pred ccCcHHHHhCCCCCCeEECCCCCHHHHHHHHHhcCCCeEEEEcC-------------CCcEEEEEecHHHHHHHhcCCC-
Confidence 45679999963348999999999999999999999988888885 3689999999999875543211
Q ss_pred CChhhhhcCChhhhccCCCCCceEEeCCCCCHHHHHHHHh-cCCceEEEeccCcchhhhhhhcccccccccCCCCceeee
Q 016003 86 LSPSLALKQPVSVLLPQLLPPLVMHVEPSCSLLEAMDLML-GGAQNLVVPIKNRLSIKRKQQQKLSSSSLTNHNGREFCW 164 (397)
Q Consensus 86 ~~~~~~~~~~V~~lm~~~~~~~~~~V~~~~sL~~al~~m~-~g~~r~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I 164 (397)
..+.+|+++|... ++++.+++++.+|++.|. +++++++|.++ ++++|+
T Consensus 266 -----~~~~~v~~im~~~----~~~v~~~~~l~~a~~~m~~~~~~~lpVv~~----------------------~~lvGi 314 (326)
T PRK10892 266 -----LRQASIADVMTPG----GIRVRPGILAVDALNLMQSRHITSVLVADG----------------------DHLLGV 314 (326)
T ss_pred -----cccCCHHHhcCCC----CEEECCCCCHHHHHHHHHHCCCcEEEEeeC----------------------CEEEEE
Confidence 1246899999654 889999999999999999 89999988742 357899
Q ss_pred ecHHHHHHH
Q 016003 165 LTQEDIIRF 173 (397)
Q Consensus 165 ITq~DIi~~ 173 (397)
||+.||++.
T Consensus 315 it~~dil~~ 323 (326)
T PRK10892 315 LHMHDLLRA 323 (326)
T ss_pred EEhHHhHhc
Confidence 999999875
|
|
| >cd04599 CBS_pair_GGDEF_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain | Back alignment and domain information |
|---|
Probab=99.25 E-value=9.5e-11 Score=94.90 Aligned_cols=103 Identities=19% Similarity=0.254 Sum_probs=82.8
Q ss_pred CeEEEeCCCcHHHHHHHHHhcCCCCCEEEEEcCCCcEEEeeccCcccCcchhHHHHHhhcChhhhhhhhccCCCCchhHH
Q 016003 198 DVVAVDYHSPASLALEAISRSLFDQTSVAVVDSDGFLIGEISPSTLGCCDETVAAAITTLSAGDLMAYIDCGGPPEDLVR 277 (397)
Q Consensus 198 ~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~is~~dl~~~~~~~~~~~~~ls~~Dl~~~~~~~~~~~~l~~ 277 (397)
+++++.+++++.++++.|.+++. ..+||+| +|+++|+++ ..|+......
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~V~d-~~~~~Giv~-------------------~~~l~~~~~~--------- 50 (105)
T cd04599 2 DPITIDPLDSVGRAARLMEKHRI--GGLPVVE-DGKLVGIIT-------------------SRDVRRAHPN--------- 50 (105)
T ss_pred CCEEECCCCcHHHHHHHHHHcCC--CEEEEEE-CCEEEEEEe-------------------hHHhhccccc---------
Confidence 56789999999999999998888 9999998 589999954 4444331000
Q ss_pred HHHHHhhhcchhhhhhhhccccCCCCCCCCCCCCCccchhhhccccCCCccccccchhhhhcCCccEEeCCCCcHHHHHH
Q 016003 278 VVKERLKDKGLEGMLEHFDMSSSLMPYLSTSSSSDEESTATSKLTRSGKHSRSMSYSARMVRRAEAIVCHPTSSLMAVMI 357 (397)
Q Consensus 278 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~~~~sl~~v~~ 357 (397)
.. ....|..++.++.+++++.++++
T Consensus 51 --------~~-----------------------------------------------~~~~~~~~~~~v~~~~~l~~~~~ 75 (105)
T cd04599 51 --------RL-----------------------------------------------VADAMTREVVTISPEASLLEAKR 75 (105)
T ss_pred --------CC-----------------------------------------------HHHHccCCCEEECCCCCHHHHHH
Confidence 00 00124557899999999999999
Q ss_pred HHHHcCCcEEEEEcCCCcEEEEEehHHHHH
Q 016003 358 QAIAHRVTYVWVIEDDCTLTGIVTFSDLLK 387 (397)
Q Consensus 358 ~m~~~~i~rl~VVd~~~~lvGvVt~~DIl~ 387 (397)
+|.+++..++||+|+ |+++|+||..||+.
T Consensus 76 ~~~~~~~~~~~Vv~~-~~~~G~it~~~l~~ 104 (105)
T cd04599 76 LMEEKKIERLPVLRE-RKLVGIITKGTIAL 104 (105)
T ss_pred HHHHcCCCEeeEEEC-CEEEEEEEHHHhcc
Confidence 999999999999998 89999999999974
|
The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. |
| >cd04603 CBS_pair_KefB_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the KefB (Kef-type K+ transport systems) domain which is involved in inorganic ion transport and metabolism | Back alignment and domain information |
|---|
Probab=99.25 E-value=7.1e-11 Score=97.49 Aligned_cols=109 Identities=14% Similarity=0.136 Sum_probs=89.6
Q ss_pred CeEEEeCChhHHHHHHHHhhCCCceEEEEccCCCCCCCCCCCCCCCeEEEEEehhHHHHHHhhcCCCCChhhhhcCChhh
Q 016003 19 ALRALSISAAIADALSALKNSDESFISVWDCNCCSNHRKLGDACECQCVGKVCMVDVICYLCKDSNSLSPSLALKQPVSV 98 (397)
Q Consensus 19 ~li~v~~~~tv~~Al~~L~~~~I~s~PV~d~~~~~~~~~~~~~~~~~~vGiv~~~Dil~~l~~~~~l~~~~~~~~~~V~~ 98 (397)
+++++++++++.+|++.|.+++...+||+|. +++++|+++..|+.....+ ...+.++.+
T Consensus 2 ~~~~v~~~~~l~~a~~~~~~~~~~~~~V~d~-------------~~~~~G~v~~~dl~~~~~~--------~~~~~~v~~ 60 (111)
T cd04603 2 QTVSVNCENPLREAIKMINELGARAVVVVDE-------------ENKVLGQVTLSDLLEIGPN--------DYETLKVCE 60 (111)
T ss_pred ceEEeCCCCcHHHHHHHHHHcCCCEEEEEcC-------------CCCEEEEEEHHHHHhhccc--------cccccChhh
Confidence 3578999999999999999999999999996 3689999999999874211 112457889
Q ss_pred hccCCCCCceEEeCCCCCHHHHHHHHh-cCCceEEEeccCcchhhhhhhcccccccccCCCCceeeeecHHHHHHH
Q 016003 99 LLPQLLPPLVMHVEPSCSLLEAMDLML-GGAQNLVVPIKNRLSIKRKQQQKLSSSSLTNHNGREFCWLTQEDIIRF 173 (397)
Q Consensus 99 lm~~~~~~~~~~V~~~~sL~~al~~m~-~g~~r~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IITq~DIi~~ 173 (397)
+|... +.++.+++++.+|++.|. ++.++++|++++ +..+|+||+.|+++|
T Consensus 61 ~~~~~----~~~v~~~~~l~~al~~m~~~~~~~lpVvd~~---------------------~~~~Giit~~di~~~ 111 (111)
T cd04603 61 VYIVP----VPIVYCDSKVTDLLRIFRETEPPVVAVVDKE---------------------GKLVGTIYERELLRF 111 (111)
T ss_pred eeecC----CcEECCCCcHHHHHHHHHHcCCCeEEEEcCC---------------------CeEEEEEEhHHhhcC
Confidence 98543 788999999999999999 789999988632 457899999999874
|
CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. |
| >cd04608 CBS_pair_PALP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream | Back alignment and domain information |
|---|
Probab=99.25 E-value=4.8e-11 Score=101.08 Aligned_cols=123 Identities=18% Similarity=0.179 Sum_probs=89.4
Q ss_pred CCeEEEeCChhHHHHHHHHhhCCCceEEEEccCCCCCCCCCCCCCCCeEEEEEehhHHHHHHhhcCCCCChhhhhcCChh
Q 016003 18 PALRALSISAAIADALSALKNSDESFISVWDCNCCSNHRKLGDACECQCVGKVCMVDVICYLCKDSNSLSPSLALKQPVS 97 (397)
Q Consensus 18 ~~li~v~~~~tv~~Al~~L~~~~I~s~PV~d~~~~~~~~~~~~~~~~~~vGiv~~~Dil~~l~~~~~l~~~~~~~~~~V~ 97 (397)
+++++++++.|+.+|++.|.++++..+||+|.+ ++++|+++..|++..+.+.. ...+.+|+
T Consensus 2 ~~~~~v~~~~~v~~a~~~m~~~~~~~~~Vvd~~-------------~~~~Gii~~~dl~~~~~~~~------~~~~~~v~ 62 (124)
T cd04608 2 KAPVTVLPTVTCAEAIEILKEKGFDQLPVVDES-------------GKILGMVTLGNLLSSLSSGK------VQPSDPVS 62 (124)
T ss_pred CCCEEECCCCCHHHHHHHHHHcCCCEEEEEcCC-------------CCEEEEEEHHHHHHHHHHhc------cCCCCcHH
Confidence 467899999999999999999999999999963 68999999999998776522 12357899
Q ss_pred hhccCCCCCceEEeCCCCCHHHHHHHHhcCCceEEEeccCcchhhhhhhcccccccccCCCCceeeeecHHHHHHHH
Q 016003 98 VLLPQLLPPLVMHVEPSCSLLEAMDLMLGGAQNLVVPIKNRLSIKRKQQQKLSSSSLTNHNGREFCWLTQEDIIRFI 174 (397)
Q Consensus 98 ~lm~~~~~~~~~~V~~~~sL~~al~~m~~g~~r~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IITq~DIi~~l 174 (397)
++|... +.++.+++++.++.++|... +.+.+........ -....++++.+||||..|+++|+
T Consensus 63 ~im~~~----~~~v~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~----------~~v~~~~~~~~Givt~~Dl~~~~ 124 (124)
T cd04608 63 KALYKQ----FKRVNKNDTLGKLSRILETD-AFLLVFFEQISSA----------AIGKEKQEKPIGIVTKIDLLSYI 124 (124)
T ss_pred HHhhcc----ceecCCCCCHHHHHhhcccC-CceEEEecccccc----------ccccccccceEEEEehhHhhhhC
Confidence 999765 88999999999999966421 1111111100000 00112336889999999999874
|
The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a poten |
| >TIGR03520 GldE gliding motility-associated protein GldE | Back alignment and domain information |
|---|
Probab=99.24 E-value=2.1e-10 Score=116.81 Aligned_cols=161 Identities=17% Similarity=0.140 Sum_probs=123.0
Q ss_pred cccccchhhhhhcCCCCeEEEeCChhHHHHHHHHhhCCCceEEEEccCCCCCCCCCCCCCCCeEEEEEehhHHHHHHhhc
Q 016003 3 VSLLADEVSDLCLGKPALRALSISAAIADALSALKNSDESFISVWDCNCCSNHRKLGDACECQCVGKVCMVDVICYLCKD 82 (397)
Q Consensus 3 ~~~~~~~v~dl~~~k~~li~v~~~~tv~~Al~~L~~~~I~s~PV~d~~~~~~~~~~~~~~~~~~vGiv~~~Dil~~l~~~ 82 (397)
+-|..++|+|+|....++++++.++|++++++.+.+++++++||++.+ .++++|+++..|++.++.+
T Consensus 186 l~l~~~~v~diMtpr~~v~~l~~~~~~~e~~~~~~~~~~sR~PV~~~~------------~d~ivGiv~~kDll~~~~~- 252 (408)
T TIGR03520 186 VSFGNTDTKQVMRPRLDIFALDIETSFSEIIPKIIENGYSRIPVYKET------------IDNITGVLYIKDLLPHLNK- 252 (408)
T ss_pred hccCCCEeeeeCCchHhEEEEECCCCHHHHHHHHHhCCCCEEEEEcCC------------CCceEEEEEHHHHHhHhcc-
Confidence 346788999999776689999999999999999999999999999853 3689999999999976532
Q ss_pred CCCCChhhhhcCChhhhccCCCCCceEEeCCCCCHHHHHHHHh-cCCceEEEeccCcchhhhhhhcccccccccCCCCce
Q 016003 83 SNSLSPSLALKQPVSVLLPQLLPPLVMHVEPSCSLLEAMDLML-GGAQNLVVPIKNRLSIKRKQQQKLSSSSLTNHNGRE 161 (397)
Q Consensus 83 ~~l~~~~~~~~~~V~~lm~~~~~~~~~~V~~~~sL~~al~~m~-~g~~r~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (397)
+ ..++.++|. +++.|.+++++.++++.|. ++.|..+|+++. |..
T Consensus 253 ~---------~~~l~~~~~-----~~~~Vpe~~~l~~ll~~m~~~~~~~aiVvDE~---------------------G~~ 297 (408)
T TIGR03520 253 K---------NFDWQSLLR-----EPYFVPENKKLDDLLRDFQEKKNHLAIVVDEY---------------------GGT 297 (408)
T ss_pred C---------CCCHHHHcC-----CCeEeCCCCcHHHHHHHHHhcCceEEEEEcCC---------------------CCE
Confidence 1 124677774 3689999999999999999 567777776532 456
Q ss_pred eeeecHHHHHHHHHhcc-CCCCCCccCCccccCCCCcCeEEEeCCCcHHHHHHHH
Q 016003 162 FCWLTQEDIIRFILSSI-SLFSPIPALSIDSLGIISTDVVAVDYHSPASLALEAI 215 (397)
Q Consensus 162 ~~IITq~DIi~~l~~~~-~~l~~l~~~ti~~L~~~~~~v~tv~~~~~~~~a~~~m 215 (397)
.||||.+||++.+.... ++... ....+.. .....+.+...+++.+..+.|
T Consensus 298 ~GiVT~eDileeivgei~de~d~-~~~~i~~---~~~~~~~v~G~~~l~~l~~~l 348 (408)
T TIGR03520 298 SGLVTLEDIIEEIVGDISDEFDD-EDLIYSK---IDDNNYVFEGKTSLKDFYKIL 348 (408)
T ss_pred EEEEEHHHHHHHHhCCCCCcCCc-CccceEE---eCCCeEEEEeccCHHHHHHHh
Confidence 79999999999885322 11111 1111211 234578899999999998888
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldC is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. GldE was discovered because of its adjacency to GldD in F. johnsonii. Overexpression of GldE partially supresses the effects of a GldB point mutant suggesting that GldB and GldE interact. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Not all Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility and in fact some do not appear to express the gliding phenotype. |
| >cd04802 CBS_pair_3 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.4e-10 Score=95.10 Aligned_cols=111 Identities=24% Similarity=0.330 Sum_probs=85.7
Q ss_pred cCeEEEeCCCcHHHHHHHHHhcCCCCCEEEEEcCCCcEEEeeccCcccCcchhHHHHHhhcChhhhhhhhccCCCCchhH
Q 016003 197 TDVVAVDYHSPASLALEAISRSLFDQTSVAVVDSDGFLIGEISPSTLGCCDETVAAAITTLSAGDLMAYIDCGGPPEDLV 276 (397)
Q Consensus 197 ~~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~is~~dl~~~~~~~~~~~~~ls~~Dl~~~~~~~~~~~~l~ 276 (397)
++++++++++++.++++.|.+.+. +.+||+|++ +++|+ ++..|++..+...
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~-~~~G~-------------------v~~~dl~~~~~~~------- 51 (112)
T cd04802 1 KNVITVDPDTTVYEAANIMTENNI--GRLIVVDNE-KPVGI-------------------ITERDLVKKVVSR------- 51 (112)
T ss_pred CCcEEECCCCCHHHHHHHHHHCCC--CEEEEEECC-EEEEE-------------------EEHHHHHHHHhhc-------
Confidence 357789999999999999998888 999999965 99999 5566666521000
Q ss_pred HHHHHHhhhcchhhhhhhhccccCCCCCCCCCCCCCccchhhhccccCCCccccccchhhhhcCCccEEeCCCCcHHHHH
Q 016003 277 RVVKERLKDKGLEGMLEHFDMSSSLMPYLSTSSSSDEESTATSKLTRSGKHSRSMSYSARMVRRAEAIVCHPTSSLMAVM 356 (397)
Q Consensus 277 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~~~~sl~~v~ 356 (397)
... . . ..+...+|..++.+|.+++++.+++
T Consensus 52 ----------~~~------~--------------------------~--------~~~~~~~~~~~~~~v~~~~~l~~~~ 81 (112)
T cd04802 52 ----------NLK------P--------------------------R--------EVPVGEVMSTPLITIDPNASLNEAA 81 (112)
T ss_pred ----------cCC------c--------------------------c--------cCCHHHhcCCCcEEECCCCCHHHHH
Confidence 000 0 0 0001234566889999999999999
Q ss_pred HHHHHcCCcEEEEEcCCCcEEEEEehHHHHH
Q 016003 357 IQAIAHRVTYVWVIEDDCTLTGIVTFSDLLK 387 (397)
Q Consensus 357 ~~m~~~~i~rl~VVd~~~~lvGvVt~~DIl~ 387 (397)
++|.+++.+++||||++ +++|+||..||++
T Consensus 82 ~~~~~~~~~~~~Vv~~~-~~~Gvi~~~di~~ 111 (112)
T cd04802 82 KLMAKHGIKRLPVVDDD-ELVGIVTTTDIVM 111 (112)
T ss_pred HHHHHcCCCeeEEeeCC-EEEEEEEhhhhhc
Confidence 99999999999999975 9999999999985
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera |
| >PRK14869 putative manganese-dependent inorganic pyrophosphatase; Provisional | Back alignment and domain information |
|---|
Probab=99.24 E-value=2.5e-10 Score=120.53 Aligned_cols=197 Identities=19% Similarity=0.241 Sum_probs=125.7
Q ss_pred cCChhhhccCCCCCceEEeCCCCCHHHHHHHHh-cCCceEEEeccCcchhhhhhhcccccccccCCCCceeeeecHHHHH
Q 016003 93 KQPVSVLLPQLLPPLVMHVEPSCSLLEAMDLML-GGAQNLVVPIKNRLSIKRKQQQKLSSSSLTNHNGREFCWLTQEDII 171 (397)
Q Consensus 93 ~~~V~~lm~~~~~~~~~~V~~~~sL~~al~~m~-~g~~r~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IITq~DIi 171 (397)
..+|+++|.+. ++++.+++++.+|++.|. +++++++|++++ ++..|+||..|+.
T Consensus 67 ~~~V~dim~~~----~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~---------------------g~l~Givt~~di~ 121 (546)
T PRK14869 67 KPQVRDLEIDK----PVTVSPDTSLKEAWNLMDENNVKTLPVVDEE---------------------GKLLGLVSLSDLA 121 (546)
T ss_pred CCcHHHhcCCC----CcEECCCCcHHHHHHHHHHcCCCEEEEEcCC---------------------CEEEEEEEHHHHH
Confidence 36899999755 899999999999999999 789999988632 4578899999999
Q ss_pred HHHHhccC--CCCCCccCCcc----------------------c-----------cCCCCc-CeEEEeCCCcHHHHHHHH
Q 016003 172 RFILSSIS--LFSPIPALSID----------------------S-----------LGIIST-DVVAVDYHSPASLALEAI 215 (397)
Q Consensus 172 ~~l~~~~~--~l~~l~~~ti~----------------------~-----------L~~~~~-~v~tv~~~~~~~~a~~~m 215 (397)
+++.+..+ .+... ..++. . ++.+.+ +++.+.....+ ...+
T Consensus 122 ~~~~~~~~~~~~~~~-~~t~~~i~~~L~~~~l~~~~~~~~~~~~~~v~a~~~~~~~~~~~~~~lvi~gdr~d~---~~~a 197 (546)
T PRK14869 122 RAYMDILDPEILSKS-PTSLENIIRTLDGEVLVGAEEDKVEEGKVVVAAMAPESLLERIEEGDIVIVGDREDI---QLAA 197 (546)
T ss_pred HHHHhhcchhhhhhc-CCCHHHHHHhcCcEEEecCcccccccccEEEEEcCHHHHHHhccCCCEEEEcCcHHH---HHHH
Confidence 87764221 01000 00000 0 123443 35555444443 3356
Q ss_pred HhcCCCCCEEEEEcCCCcEEEeeccCcccCcchhHHHHHhhcChhhhhhhhccCCCCchhHHHHHHHhhhcchhhh---h
Q 016003 216 SRSLFDQTSVAVVDSDGFLIGEISPSTLGCCDETVAAAITTLSAGDLMAYIDCGGPPEDLVRVVKERLKDKGLEGM---L 292 (397)
Q Consensus 216 ~~~~i~~s~vpVVd~~g~lvG~is~~dl~~~~~~~~~~~~~ls~~Dl~~~~~~~~~~~~l~~~~~~~l~~~~~~~~---~ 292 (397)
.+.++ +++.|..... + +. +++...+ +++++-+ .
T Consensus 198 i~~~~--~~lIlt~g~~-~-----------------------~~-~v~~la~-----------------~~~i~ii~t~~ 233 (546)
T PRK14869 198 IEAGV--RLLIITGGAP-V-----------------------SE-DVLELAK-----------------ENGVTVISTPY 233 (546)
T ss_pred HHcCC--CEEEECCCCC-C-----------------------CH-HHHHHHH-----------------hCCCeEEEecc
Confidence 77888 8888775432 1 11 1111110 1111110 0
Q ss_pred hhhccccCCCCCCCCCCCCCccchhhhccccCCCccccccchhhhhcC-CccEEeCCCCcHHHHHHHHHHcCCcEEEEEc
Q 016003 293 EHFDMSSSLMPYLSTSSSSDEESTATSKLTRSGKHSRSMSYSARMVRR-AEAIVCHPTSSLMAVMIQAIAHRVTYVWVIE 371 (397)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~it~~~~~sl~~v~~~m~~~~i~rl~VVd 371 (397)
+.+.. ...+.. ..+...+|+ .+++++++++++.++.+.|.+++++++||||
T Consensus 234 dt~~t--------------------------~~~l~~--~~~V~~iM~~~~~~~~~~~~~~~~~~~~m~~~~~~~~PVvd 285 (546)
T PRK14869 234 DTFTT--------------------------ARLINQ--SIPVSYIMTTEDLVTFSKDDYLEDVKEVMLKSRYRSYPVVD 285 (546)
T ss_pred cHHHH--------------------------HHHhhc--CCCHHHhccCCCcEEECCCCcHHHHHHHHHhcCCCceEEEc
Confidence 00000 000000 112345688 8999999999999999999999999999999
Q ss_pred CCCcEEEEEehHHHHHHHH
Q 016003 372 DDCTLTGIVTFSDLLKVFR 390 (397)
Q Consensus 372 ~~~~lvGvVt~~DIl~~l~ 390 (397)
++|+++|+||+.|+++...
T Consensus 286 ~~g~lvGiit~~dl~~~~~ 304 (546)
T PRK14869 286 EDGKVVGVISRYHLLSPVR 304 (546)
T ss_pred CCCCEEEEEEHHHhhcccc
Confidence 9999999999999998654
|
|
| >cd04625 CBS_pair_12 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.4e-10 Score=95.13 Aligned_cols=111 Identities=22% Similarity=0.342 Sum_probs=83.2
Q ss_pred CeEEEeCCCcHHHHHHHHHhcCCCCCEEEEEcCCCcEEEeeccCcccCcchhHHHHHhhcChhhhhhhhccCCCCchhHH
Q 016003 198 DVVAVDYHSPASLALEAISRSLFDQTSVAVVDSDGFLIGEISPSTLGCCDETVAAAITTLSAGDLMAYIDCGGPPEDLVR 277 (397)
Q Consensus 198 ~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~is~~dl~~~~~~~~~~~~~ls~~Dl~~~~~~~~~~~~l~~ 277 (397)
++.++.+++++.+|++.|.+++. +.++|.+ +|+++|++ +.+|++......
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~--~~~~v~~-~~~~~G~v-------------------~~~dl~~~~~~~-------- 51 (112)
T cd04625 2 TIYTVAPETLLSEAVATMAEQDL--GSLVVME-RGELVGLL-------------------TFREVLQAMAQH-------- 51 (112)
T ss_pred CcEEECCCCcHHHHHHHHHHcCC--CeEEEee-CCEEEEEE-------------------EHHHHHHHHHhc--------
Confidence 46789999999999999988877 7777665 48999994 556665422100
Q ss_pred HHHHHhhhcchhhhhhhhccccCCCCCCCCCCCCCccchhhhccccCCCccccccchhhhhcCCccEEeCCCCcHHHHHH
Q 016003 278 VVKERLKDKGLEGMLEHFDMSSSLMPYLSTSSSSDEESTATSKLTRSGKHSRSMSYSARMVRRAEAIVCHPTSSLMAVMI 357 (397)
Q Consensus 278 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~~~~sl~~v~~ 357 (397)
+. .++ . .....+|..++.++.+++++.++++
T Consensus 52 ---------~~------------~~~--------------------~--------~~v~~~~~~~~~~v~~~~~l~~a~~ 82 (112)
T cd04625 52 ---------GA------------GVL--------------------D--------TTVRAIMNPEPIVASPDDSIDEVRR 82 (112)
T ss_pred ---------CC------------chh--------------------c--------CCHHHHhCCCCeEECCCCCHHHHHH
Confidence 00 000 0 0011235667889999999999999
Q ss_pred HHHHcCCcEEEEEcCCCcEEEEEehHHHHHH
Q 016003 358 QAIAHRVTYVWVIEDDCTLTGIVTFSDLLKV 388 (397)
Q Consensus 358 ~m~~~~i~rl~VVd~~~~lvGvVt~~DIl~~ 388 (397)
+|.+++.+++||+|+ |+++|+||..||+++
T Consensus 83 ~m~~~~~~~l~Vv~~-~~~~Gvvt~~dl~~~ 112 (112)
T cd04625 83 LMVERHLRYLPVLDG-GTLLGVISFHDVAKA 112 (112)
T ss_pred HHHHcCCCeeeEEEC-CEEEEEEEHHHhhcC
Confidence 999999999999985 899999999999863
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener |
| >PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=99.23 E-value=7.7e-11 Score=122.63 Aligned_cols=113 Identities=25% Similarity=0.294 Sum_probs=93.9
Q ss_pred CCCcCeEEEeCCCcHHHHHHHHHhcCCCCCEEEEEcCCCcEEEeeccCcccCcchhHHHHHhhcChhhhhhhhccCCCCc
Q 016003 194 IISTDVVAVDYHSPASLALEAISRSLFDQTSVAVVDSDGFLIGEISPSTLGCCDETVAAAITTLSAGDLMAYIDCGGPPE 273 (397)
Q Consensus 194 ~~~~~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~is~~dl~~~~~~~~~~~~~ls~~Dl~~~~~~~~~~~ 273 (397)
+|.++++++.+++++.+|+++|.++++ +.+||+|++|+++|+|| .+|++...+.
T Consensus 92 im~~~~v~i~~~~tv~ea~~~m~~~~~--~~lpVvd~~g~lvGiVt-------------------~~DL~~~~~~----- 145 (486)
T PRK05567 92 GVVTDPVTVTPDTTLAEALALMARYGI--SGVPVVDENGKLVGIIT-------------------NRDVRFETDL----- 145 (486)
T ss_pred cccCCCeEeCCCCCHHHHHHHHHHhCC--CEEEEEccCCEEEEEEE-------------------HHHhhhcccC-----
Confidence 677899999999999999999999999 99999999999999955 5555321000
Q ss_pred hhHHHHHHHhhhcchhhhhhhhccccCCCCCCCCCCCCCccchhhhccccCCCccccccchhhhhcC-CccEEeCCCCcH
Q 016003 274 DLVRVVKERLKDKGLEGMLEHFDMSSSLMPYLSTSSSSDEESTATSKLTRSGKHSRSMSYSARMVRR-AEAIVCHPTSSL 352 (397)
Q Consensus 274 ~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~it~~~~~sl 352 (397)
. .. ...+|. .++++|.+++++
T Consensus 146 ----------------------~----------------------------~~--------V~dim~~~~~v~v~~~~sl 167 (486)
T PRK05567 146 ----------------------S----------------------------QP--------VSEVMTKERLVTVPEGTTL 167 (486)
T ss_pred ----------------------C----------------------------Cc--------HHHHcCCCCCEEECCCCCH
Confidence 0 00 012355 689999999999
Q ss_pred HHHHHHHHHcCCcEEEEEcCCCcEEEEEehHHHHHHHH
Q 016003 353 MAVMIQAIAHRVTYVWVIEDDCTLTGIVTFSDLLKVFR 390 (397)
Q Consensus 353 ~~v~~~m~~~~i~rl~VVd~~~~lvGvVt~~DIl~~l~ 390 (397)
.+++..|.+++++.+||+|++|+++|+||..||++.+.
T Consensus 168 ~eal~~m~~~~~~~lpVVDe~g~lvGiIT~~DLl~~~~ 205 (486)
T PRK05567 168 EEALELLHEHRIEKLPVVDDNGRLKGLITVKDIEKAEE 205 (486)
T ss_pred HHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHhhhhhh
Confidence 99999999999999999999999999999999998863
|
|
| >cd04594 CBS_pair_EriC_assoc_archaea This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the EriC CIC-type chloride channels in archaea | Back alignment and domain information |
|---|
Probab=99.23 E-value=1e-10 Score=95.21 Aligned_cols=100 Identities=17% Similarity=0.132 Sum_probs=80.9
Q ss_pred EEEeCCCcHHHHHHHHHhcCCCCCEEEEEcCCCcEEEeeccCcccCcchhHHHHHhhcChhhhhhhhccCCCCchhHHHH
Q 016003 200 VAVDYHSPASLALEAISRSLFDQTSVAVVDSDGFLIGEISPSTLGCCDETVAAAITTLSAGDLMAYIDCGGPPEDLVRVV 279 (397)
Q Consensus 200 ~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~is~~dl~~~~~~~~~~~~~ls~~Dl~~~~~~~~~~~~l~~~~ 279 (397)
+++.++.++.+|++.|.+.++ +.+||+|+ |+++|+++ ..|++....
T Consensus 4 ~~v~~~~~~~~~~~~~~~~~~--~~~~V~d~-~~~~G~v~-------------------~~~l~~~~~------------ 49 (104)
T cd04594 4 IKVKDYDKVYEAKRIMIENDL--LSLPVVDY-NKFLGAVY-------------------LKDIENATY------------ 49 (104)
T ss_pred eEECCCCCHHHHHHHHHHcCC--cEEEEEEC-CEEEEEEE-------------------HHHHhhhcc------------
Confidence 468999999999999999988 99999998 99999954 455443100
Q ss_pred HHHhhhcchhhhhhhhccccCCCCCCCCCCCCCccchhhhccccCCCccccccchhhhhcCCccEEeCCCCcHHHHHHHH
Q 016003 280 KERLKDKGLEGMLEHFDMSSSLMPYLSTSSSSDEESTATSKLTRSGKHSRSMSYSARMVRRAEAIVCHPTSSLMAVMIQA 359 (397)
Q Consensus 280 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~~~~sl~~v~~~m 359 (397)
. .. ...|..+.+++.+++++.+++..|
T Consensus 50 ---------~------------------------------------~~--------~~~~~~~~~~v~~~~~l~~a~~~~ 76 (104)
T cd04594 50 ---------G------------------------------------DV--------VDYIVRGIPYVRLTSTAEEAWEVM 76 (104)
T ss_pred ---------c------------------------------------ch--------hhhhhcCCcEEcCCCCHHHHHHHH
Confidence 0 00 012445678999999999999999
Q ss_pred HHcCCcEEEEEcCCCcEEEEEehHHHHH
Q 016003 360 IAHRVTYVWVIEDDCTLTGIVTFSDLLK 387 (397)
Q Consensus 360 ~~~~i~rl~VVd~~~~lvGvVt~~DIl~ 387 (397)
.+++.+++||+| +|+++|+||..||++
T Consensus 77 ~~~~~~~~~Vv~-~~~~iGvit~~dl~~ 103 (104)
T cd04594 77 MKNKTRWCPVVD-DGKFKGIVTLDSILD 103 (104)
T ss_pred HHcCcceEEEEE-CCEEEEEEEHHHhhc
Confidence 999999999998 489999999999975
|
These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS do |
| >TIGR03520 GldE gliding motility-associated protein GldE | Back alignment and domain information |
|---|
Probab=99.21 E-value=1.3e-10 Score=118.35 Aligned_cols=123 Identities=14% Similarity=0.225 Sum_probs=99.2
Q ss_pred ccCCccccCCCCc--CeEEEeCCCcHHHHHHHHHhcCCCCCEEEEEcCC-CcEEEeeccCcccCcchhHHHHHhhcChhh
Q 016003 185 PALSIDSLGIIST--DVVAVDYHSPASLALEAISRSLFDQTSVAVVDSD-GFLIGEISPSTLGCCDETVAAAITTLSAGD 261 (397)
Q Consensus 185 ~~~ti~~L~~~~~--~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~-g~lvG~is~~dl~~~~~~~~~~~~~ls~~D 261 (397)
.+.++++ +|++ ++++++.++++.++++.|.+++. +.+||.+++ ++++|+ ++.+|
T Consensus 189 ~~~~v~d--iMtpr~~v~~l~~~~~~~e~~~~~~~~~~--sR~PV~~~~~d~ivGi-------------------v~~kD 245 (408)
T TIGR03520 189 GNTDTKQ--VMRPRLDIFALDIETSFSEIIPKIIENGY--SRIPVYKETIDNITGV-------------------LYIKD 245 (408)
T ss_pred CCCEeee--eCCchHhEEEEECCCCHHHHHHHHHhCCC--CEEEEEcCCCCceEEE-------------------EEHHH
Confidence 3556665 7985 79999999999999999999999 999999875 589999 55777
Q ss_pred hhhhhccCCCCchhHHHHHHHhhhcchhhhhhhhccccCCCCCCCCCCCCCccchhhhccccCCCccccccchhhhhcCC
Q 016003 262 LMAYIDCGGPPEDLVRVVKERLKDKGLEGMLEHFDMSSSLMPYLSTSSSSDEESTATSKLTRSGKHSRSMSYSARMVRRA 341 (397)
Q Consensus 262 l~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (397)
++.+.... . . .+ ..++ +
T Consensus 246 ll~~~~~~-----------------~--------------~-----------------------~l--------~~~~-~ 262 (408)
T TIGR03520 246 LLPHLNKK-----------------N--------------F-----------------------DW--------QSLL-R 262 (408)
T ss_pred HHhHhccC-----------------C--------------C-----------------------CH--------HHHc-C
Confidence 76422100 0 0 00 0112 3
Q ss_pred ccEEeCCCCcHHHHHHHHHHcCCcEEEEEcCCCcEEEEEehHHHHHHHHHHH
Q 016003 342 EAIVCHPTSSLMAVMIQAIAHRVTYVWVIEDDCTLTGIVTFSDLLKVFRKHL 393 (397)
Q Consensus 342 ~~it~~~~~sl~~v~~~m~~~~i~rl~VVd~~~~lvGvVt~~DIl~~l~~~~ 393 (397)
+++++.++.++.++++.|.+++.|..+|+|+.|.++|+||..||+..+..++
T Consensus 263 ~~~~Vpe~~~l~~ll~~m~~~~~~~aiVvDE~G~~~GiVT~eDileeivgei 314 (408)
T TIGR03520 263 EPYFVPENKKLDDLLRDFQEKKNHLAIVVDEYGGTSGLVTLEDIIEEIVGDI 314 (408)
T ss_pred CCeEeCCCCcHHHHHHHHHhcCceEEEEEcCCCCEEEEEEHHHHHHHHhCCC
Confidence 6789999999999999999999999999999999999999999999997654
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldC is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. GldE was discovered because of its adjacency to GldD in F. johnsonii. Overexpression of GldE partially supresses the effects of a GldB point mutant suggesting that GldB and GldE interact. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Not all Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility and in fact some do not appear to express the gliding phenotype. |
| >cd04589 CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the bacterial CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain | Back alignment and domain information |
|---|
Probab=99.21 E-value=2.4e-10 Score=93.68 Aligned_cols=109 Identities=21% Similarity=0.242 Sum_probs=84.6
Q ss_pred CeEEEeCCCcHHHHHHHHHhcCCCCCEEEEEcCCCcEEEeeccCcccCcchhHHHHHhhcChhhhhhhhccCCCCchhHH
Q 016003 198 DVVAVDYHSPASLALEAISRSLFDQTSVAVVDSDGFLIGEISPSTLGCCDETVAAAITTLSAGDLMAYIDCGGPPEDLVR 277 (397)
Q Consensus 198 ~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~is~~dl~~~~~~~~~~~~~ls~~Dl~~~~~~~~~~~~l~~ 277 (397)
+++++.++.++.+|++.|.+.+. +.++|+|+ |+++|++ +..|++......
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~--~~~~V~d~-~~~~G~v-------------------~~~~l~~~~~~~-------- 51 (111)
T cd04589 2 PPLIVDASTSIRDAARLMREHGA--DALLVRDG-DPRLGIV-------------------TRTDLLDAVLLD-------- 51 (111)
T ss_pred CCEEECCCCcHHHHHHHHHHcCC--CEEEEecC-CeEEEEE-------------------EHHHHHHHHHcC--------
Confidence 46788999999999999998888 99999998 8999994 455555421000
Q ss_pred HHHHHhhhcchhhhhhhhccccCCCCCCCCCCCCCccchhhhccccCCCccccccchhhhhcCCccEEeCCCCcHHHHHH
Q 016003 278 VVKERLKDKGLEGMLEHFDMSSSLMPYLSTSSSSDEESTATSKLTRSGKHSRSMSYSARMVRRAEAIVCHPTSSLMAVMI 357 (397)
Q Consensus 278 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~~~~sl~~v~~ 357 (397)
. .. . .......|..+..++.+++++.++++
T Consensus 52 ---------~-------------~~--------------~--------------~~~i~~~~~~~~~~v~~~~~l~~~~~ 81 (111)
T cd04589 52 ---------G-------------LP--------------S--------------STPVGEIATFPLITVDPDDFLFNALL 81 (111)
T ss_pred ---------C-------------CC--------------C--------------CCCHHHHhCCCcEEECCCCcHHHHHH
Confidence 0 00 0 00011235668899999999999999
Q ss_pred HHHHcCCcEEEEEcCCCcEEEEEehHHHHH
Q 016003 358 QAIAHRVTYVWVIEDDCTLTGIVTFSDLLK 387 (397)
Q Consensus 358 ~m~~~~i~rl~VVd~~~~lvGvVt~~DIl~ 387 (397)
.|.+++.+++||+|+ ++++|+||..|+++
T Consensus 82 ~~~~~~~~~~~Vv~~-~~~~G~it~~dl~~ 110 (111)
T cd04589 82 LMTRHRIHRVVVREG-GEVVGVLEQTDLLS 110 (111)
T ss_pred HHHHhCccEEEEeeC-CEEEEEEEhHHhhc
Confidence 999999999999986 89999999999986
|
Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or |
| >cd04617 CBS_pair_4 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=99.20 E-value=2.8e-10 Score=94.86 Aligned_cols=110 Identities=14% Similarity=0.209 Sum_probs=88.5
Q ss_pred ceEEeCCCCCHHHHHHHHh-cCCceEEEeccCcchhhhhhhcccccccccCCCCceeeeecHHHHHHHHHhccCCCCCCc
Q 016003 107 LVMHVEPSCSLLEAMDLML-GGAQNLVVPIKNRLSIKRKQQQKLSSSSLTNHNGREFCWLTQEDIIRFILSSISLFSPIP 185 (397)
Q Consensus 107 ~~~~V~~~~sL~~al~~m~-~g~~r~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IITq~DIi~~l~~~~~~l~~l~ 185 (397)
++..+.++.++.++++.|. ++...++|.+++ ++.+|+||+.|+.+...+.. .+.
T Consensus 2 ~~~~~~~~~~~~~a~~~~~~~~~~~~~V~d~~---------------------~~~~Givt~~dl~~~~~~~~----~~~ 56 (118)
T cd04617 2 PPVVVRENTSVYDAIVTLFLEDVGSLFVVDED---------------------GDLVGVVSRKDLLKASIGGA----DLQ 56 (118)
T ss_pred CCEEECCCCCHHHHHHHHHHcCCCEEEEEcCC---------------------CCEEEEEEHHHHHHHHHcCC----Ccc
Confidence 5788999999999999997 788888876532 35689999999998765321 122
Q ss_pred cCCccccCCCCc--CeEEEeCCCcHHHHHHHHHhcCCCCCEEEEEcCC---CcEEEeeccCcccC
Q 016003 186 ALSIDSLGIIST--DVVAVDYHSPASLALEAISRSLFDQTSVAVVDSD---GFLIGEISPSTLGC 245 (397)
Q Consensus 186 ~~ti~~L~~~~~--~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~---g~lvG~is~~dl~~ 245 (397)
..++++ +|.+ ++.++.+++++.+|+++|.++++ ..+||||++ |+++|+||.+||.+
T Consensus 57 ~~~~~~--~~~~~~~~~~v~~~~~l~~~~~~~~~~~~--~~lpVvd~~~~~~~l~Gvit~~~l~~ 117 (118)
T cd04617 57 KVPVGV--IMTRMPNITTTTPEESVLEAAKKLIEHQV--DSLPVVEKVDEGLEVIGRITKTNITK 117 (118)
T ss_pred CCCHHH--HhCCCCCcEEECCCCcHHHHHHHHHHcCC--CEeeEEeCCCccceEEEEEEhhheec
Confidence 444554 6764 79999999999999999999999 999999987 79999988777754
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera |
| >cd04609 CBS_pair_PALP_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.9e-10 Score=93.62 Aligned_cols=109 Identities=26% Similarity=0.315 Sum_probs=82.8
Q ss_pred CeEEEeCCCcHHHHHHHHHhcCCCCCEEEEEcCCCcEEEeeccCcccCcchhHHHHHhhcChhhhhhhhccCCCCchhHH
Q 016003 198 DVVAVDYHSPASLALEAISRSLFDQTSVAVVDSDGFLIGEISPSTLGCCDETVAAAITTLSAGDLMAYIDCGGPPEDLVR 277 (397)
Q Consensus 198 ~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~is~~dl~~~~~~~~~~~~~ls~~Dl~~~~~~~~~~~~l~~ 277 (397)
++.++.+++++.+|++.|.++++ +.+||+|+ |+++|+ ++..|++......
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~--~~~~V~~~-~~~~G~-------------------v~~~dl~~~~~~~-------- 51 (110)
T cd04609 2 DVVSVAPDDTVSQAIERMREYGV--SQLPVVDD-GRVVGS-------------------IDESDLLDALIEG-------- 51 (110)
T ss_pred CcEEECCCCcHHHHHHHHHHcCC--ceeeEeeC-CeeEEE-------------------EeHHHHHHHHhcc--------
Confidence 57789999999999999999988 99999998 999999 4566665522100
Q ss_pred HHHHHhhhcchhhhhhhhccccCCCCCCCCCCCCCccchhhhccccCCCccccccchhhhhcCCccEEeCCCCcHHHHHH
Q 016003 278 VVKERLKDKGLEGMLEHFDMSSSLMPYLSTSSSSDEESTATSKLTRSGKHSRSMSYSARMVRRAEAIVCHPTSSLMAVMI 357 (397)
Q Consensus 278 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~~~~sl~~v~~ 357 (397)
. .. . .......+..+++++.+++++.+++.
T Consensus 52 ------------------------~--------------~~----~--------~~~~~~~~~~~~~~v~~~~~l~~~~~ 81 (110)
T cd04609 52 ------------------------K--------------AK----F--------SLPVREVMGEPLPTVDPDAPIEELSE 81 (110)
T ss_pred ------------------------c--------------cc----c--------CcCHHHHhcCCCceeCCCCcHHHHHH
Confidence 0 00 0 00011235667899999999999998
Q ss_pred HHHHcCCcEEEEEcCCCcEEEEEehHHHHHH
Q 016003 358 QAIAHRVTYVWVIEDDCTLTGIVTFSDLLKV 388 (397)
Q Consensus 358 ~m~~~~i~rl~VVd~~~~lvGvVt~~DIl~~ 388 (397)
+|.+ . +.+||+|++|+++|+||+.||+++
T Consensus 82 ~~~~-~-~~~~vv~~~~~~~Gvvt~~di~~~ 110 (110)
T cd04609 82 LLDR-G-NVAVVVDEGGKFVGIITRADLLKY 110 (110)
T ss_pred HHHh-C-CceeEEecCCeEEEEEeHHHhhcC
Confidence 8887 3 458999988999999999999864
|
The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a pote |
| >cd04630 CBS_pair_17 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=99.20 E-value=3.3e-10 Score=93.56 Aligned_cols=112 Identities=19% Similarity=0.201 Sum_probs=91.7
Q ss_pred CCeEEEeCChhHHHHHHHHhhCCCceEEEEccCCCCCCCCCCCCCCCeEEEEEehhHHHHHHhhcCCCCChhhhhcCChh
Q 016003 18 PALRALSISAAIADALSALKNSDESFISVWDCNCCSNHRKLGDACECQCVGKVCMVDVICYLCKDSNSLSPSLALKQPVS 97 (397)
Q Consensus 18 ~~li~v~~~~tv~~Al~~L~~~~I~s~PV~d~~~~~~~~~~~~~~~~~~vGiv~~~Dil~~l~~~~~l~~~~~~~~~~V~ 97 (397)
++++++++++++.+|++.|.++++..+||.+.+ .++++|+++..|+++++..... .....++.
T Consensus 1 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~------------~~~~~G~v~~~dl~~~~~~~~~-----~~~~~~v~ 63 (114)
T cd04630 1 PNVVTIDGLATVAEALQLMKEHGVSSLVVEKRR------------ESDAYGIVTMRDILKKVVAEGR-----DPDRVNVY 63 (114)
T ss_pred CCcEEECCCCcHHHHHHHHHHcCCCEEEEEECC------------CCcEEEEEehHHHHHHHHhCCC-----CCCccCHH
Confidence 467899999999999999999999999999862 1589999999999987754211 11246789
Q ss_pred hhccCCCCCceEEeCCCCCHHHHHHHHh-cCCceEEEeccCcchhhhhhhcccccccccCCCCceeeeecHHHHHH
Q 016003 98 VLLPQLLPPLVMHVEPSCSLLEAMDLML-GGAQNLVVPIKNRLSIKRKQQQKLSSSSLTNHNGREFCWLTQEDIIR 172 (397)
Q Consensus 98 ~lm~~~~~~~~~~V~~~~sL~~al~~m~-~g~~r~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IITq~DIi~ 172 (397)
++|... ++++.+++++.++++.|. .+.+.++|.++ +.+.|+||..|+++
T Consensus 64 ~~~~~~----~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~----------------------~~~~Gvi~~~dl~~ 113 (114)
T cd04630 64 EIMTKP----LISVSPDMDIKYCARLMERTNIRRAPVVEN----------------------NELIGIISLTDIFL 113 (114)
T ss_pred HHhcCC----CeeECCCCCHHHHHHHHHHcCCCEeeEeeC----------------------CEEEEEEEHHHhhc
Confidence 999543 899999999999999999 68888888753 35688999999875
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener |
| >cd04619 CBS_pair_6 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=99.20 E-value=3.2e-10 Score=93.92 Aligned_cols=111 Identities=20% Similarity=0.287 Sum_probs=91.9
Q ss_pred CeEEEeCChhHHHHHHHHhhCCCceEEEEccCCCCCCCCCCCCCCCeEEEEEehhHHHHHHhhcCCCCChhhhhcCChhh
Q 016003 19 ALRALSISAAIADALSALKNSDESFISVWDCNCCSNHRKLGDACECQCVGKVCMVDVICYLCKDSNSLSPSLALKQPVSV 98 (397)
Q Consensus 19 ~li~v~~~~tv~~Al~~L~~~~I~s~PV~d~~~~~~~~~~~~~~~~~~vGiv~~~Dil~~l~~~~~l~~~~~~~~~~V~~ 98 (397)
.+.++++++|+.+|++.|.+++...+||+|.+ ++|+|+++..|+.+.+.... ......++.+
T Consensus 2 ~~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~~-------------g~~~G~vt~~dl~~~~~~~~-----~~~~~~~v~~ 63 (114)
T cd04619 2 RLAKIDVNATLQRAAKILGEPGIDLVVVCDPH-------------GKLAGVLTKTDVVRQMGRCG-----GPGCTAPVEN 63 (114)
T ss_pred ceEEECCCCcHHHHHHHHHhcCCCEEEEECCC-------------CCEEEEEehHHHHHHHhhcC-----CCcccCCHHH
Confidence 36789999999999999999999999999963 68999999999998765311 0123467899
Q ss_pred hccCCCCCceEEeCCCCCHHHHHHHHh-cCCceEEEeccCcchhhhhhhcccccccccCCCCceeeeecHHHHHH
Q 016003 99 LLPQLLPPLVMHVEPSCSLLEAMDLML-GGAQNLVVPIKNRLSIKRKQQQKLSSSSLTNHNGREFCWLTQEDIIR 172 (397)
Q Consensus 99 lm~~~~~~~~~~V~~~~sL~~al~~m~-~g~~r~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IITq~DIi~ 172 (397)
+|... ++++.+++++.++++.|. ++.++++|.+.+ ++.+|+||+.|+++
T Consensus 64 ~~~~~----~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~---------------------~~~~Gvi~~~dl~~ 113 (114)
T cd04619 64 VMTRA----VVSCRPGDLLHDVWQVMKQRGLKNIPVVDEN---------------------ARPLGVLNARDALK 113 (114)
T ss_pred HhcCC----CeeECCCCCHHHHHHHHHHcCCCeEEEECCC---------------------CcEEEEEEhHhhcc
Confidence 99654 889999999999999999 799999997532 35789999999874
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera |
| >PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional | Back alignment and domain information |
|---|
Probab=99.19 E-value=2.1e-10 Score=112.98 Aligned_cols=121 Identities=18% Similarity=0.257 Sum_probs=102.4
Q ss_pred cchhhhhhcCCCCeEEEeCChhHHHHHHHHhhCCCceEEEEccCCCCCCCCCCCCCCCeEEEEEehhHHHHHHhhcCCCC
Q 016003 7 ADEVSDLCLGKPALRALSISAAIADALSALKNSDESFISVWDCNCCSNHRKLGDACECQCVGKVCMVDVICYLCKDSNSL 86 (397)
Q Consensus 7 ~~~v~dl~~~k~~li~v~~~~tv~~Al~~L~~~~I~s~PV~d~~~~~~~~~~~~~~~~~~vGiv~~~Dil~~l~~~~~l~ 86 (397)
..+|+|+|..+++++++++++|+.+|++.|.+++...+||+|. +++++|+|+..|+..++..+.
T Consensus 196 ~~~V~~im~~~~~~~~v~~~~sv~~a~~~~~~~~~~~~~Vvd~-------------~g~~iG~vt~~dl~~~~~~~~--- 259 (321)
T PRK11543 196 LNKVHHLMRRDDAIPQVALTASVMDAMLELSRTGLGLVAVCDA-------------QQQVQGVFTDGDLRRWLVGGG--- 259 (321)
T ss_pred HhHHHHHhccCCCCcEeCCCCCHHHHHHHHHHcCCCEEEEEcC-------------CCcEEEEecHHHHHHHHhCCC---
Confidence 6789999965545899999999999999999999999999996 368999999999998765421
Q ss_pred ChhhhhcCChhhhccCCCCCceEEeCCCCCHHHHHHHHh-cCCceEEEeccCcchhhhhhhcccccccccCCCCceeeee
Q 016003 87 SPSLALKQPVSVLLPQLLPPLVMHVEPSCSLLEAMDLML-GGAQNLVVPIKNRLSIKRKQQQKLSSSSLTNHNGREFCWL 165 (397)
Q Consensus 87 ~~~~~~~~~V~~lm~~~~~~~~~~V~~~~sL~~al~~m~-~g~~r~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~II 165 (397)
..+.+|.++|... ++++.+++++.+|++.|. +++.++||++.+ ++.+|+|
T Consensus 260 ----~~~~~v~~im~~~----~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~---------------------~~lvGvI 310 (321)
T PRK11543 260 ----ALTTPVNEAMTRG----GTTLQAQSRAIDAKEILMKRKITAAPVVDEN---------------------GKLTGAI 310 (321)
T ss_pred ----CcCCcHHHhcCCC----CEEECCCCCHHHHHHHHHHcCCCEEEEEcCC---------------------CeEEEEE
Confidence 2346799999654 888999999999999999 899999998632 3578999
Q ss_pred cHHHHHH
Q 016003 166 TQEDIIR 172 (397)
Q Consensus 166 Tq~DIi~ 172 (397)
|+.||++
T Consensus 311 t~~di~~ 317 (321)
T PRK11543 311 NLQDFYQ 317 (321)
T ss_pred EHHHHHh
Confidence 9999985
|
|
| >PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.4e-10 Score=120.69 Aligned_cols=113 Identities=19% Similarity=0.155 Sum_probs=91.7
Q ss_pred CCCcCeEEEeCCCcHHHHHHHHHhcCCCCCEEEEEcCC---CcEEEeeccCcccCcchhHHHHHhhcChhhhhhhhccCC
Q 016003 194 IISTDVVAVDYHSPASLALEAISRSLFDQTSVAVVDSD---GFLIGEISPSTLGCCDETVAAAITTLSAGDLMAYIDCGG 270 (397)
Q Consensus 194 ~~~~~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~---g~lvG~is~~dl~~~~~~~~~~~~~ls~~Dl~~~~~~~~ 270 (397)
.|..+++++.+++++.+|+++|.++++ +++||+|++ |+++|+|+ .+|++. ....
T Consensus 101 g~i~dpvtv~pd~tv~eA~~lm~~~~~--s~vpVvd~~~~~gkLvGIVt-------------------~~DL~~-~~~~- 157 (495)
T PTZ00314 101 GFIMDPYVLSPNHTVADVLEIKEKKGF--SSILITVDGKVGGKLLGIVT-------------------SRDIDF-VKDK- 157 (495)
T ss_pred ccccCCeecCCCCCHHHHHHHHHHcCC--cEEEEEeCCccCCeEEEEEE-------------------HHHHhh-cccC-
Confidence 456778999999999999999999999 999999974 79999955 555542 1000
Q ss_pred CCchhHHHHHHHhhhcchhhhhhhhccccCCCCCCCCCCCCCccchhhhccccCCCccccccchhhhhcCC--ccEEeCC
Q 016003 271 PPEDLVRVVKERLKDKGLEGMLEHFDMSSSLMPYLSTSSSSDEESTATSKLTRSGKHSRSMSYSARMVRRA--EAIVCHP 348 (397)
Q Consensus 271 ~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~it~~~ 348 (397)
... ..++|+. +++++++
T Consensus 158 -----------------------------------------------------~~~--------V~diMt~~~~lvtv~~ 176 (495)
T PTZ00314 158 -----------------------------------------------------STP--------VSEVMTPREKLVVGNT 176 (495)
T ss_pred -----------------------------------------------------CCC--------HHHhhCCcCCceEeCC
Confidence 000 1123555 8899999
Q ss_pred CCcHHHHHHHHHHcCCcEEEEEcCCCcEEEEEehHHHHHHHH
Q 016003 349 TSSLMAVMIQAIAHRVTYVWVIEDDCTLTGIVTFSDLLKVFR 390 (397)
Q Consensus 349 ~~sl~~v~~~m~~~~i~rl~VVd~~~~lvGvVt~~DIl~~l~ 390 (397)
+.++.+++++|.+++++.+||||++++++|+||++||++...
T Consensus 177 ~~sl~eAl~lm~e~~i~~LPVVd~~g~liGIIT~~DIl~~~~ 218 (495)
T PTZ00314 177 PISLEEANEVLRESRKGKLPIVNDNGELVALVSRSDLKKNRG 218 (495)
T ss_pred CCCHHHHHHHHHHcCCCeEEEEcCCCcEEEEEEehHhhhccc
Confidence 999999999999999999999999999999999999998753
|
|
| >cd02205 CBS_pair The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=99.18 E-value=4.1e-10 Score=90.86 Aligned_cols=111 Identities=28% Similarity=0.364 Sum_probs=88.0
Q ss_pred CeEEEeCCCcHHHHHHHHHhcCCCCCEEEEEcCCCcEEEeeccCcccCcchhHHHHHhhcChhhhhhhhccCCCCchhHH
Q 016003 198 DVVAVDYHSPASLALEAISRSLFDQTSVAVVDSDGFLIGEISPSTLGCCDETVAAAITTLSAGDLMAYIDCGGPPEDLVR 277 (397)
Q Consensus 198 ~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~is~~dl~~~~~~~~~~~~~ls~~Dl~~~~~~~~~~~~l~~ 277 (397)
++.++.+++++.++++.|...+. ..+||+|++++++|+ ++.+|++.+....
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~G~-------------------v~~~~l~~~~~~~-------- 52 (113)
T cd02205 2 DVVTVSPDDTVAEALRLMLEHGI--SGLPVVDDDGRLVGI-------------------VTERDLLRALAEG-------- 52 (113)
T ss_pred CceEecCCCCHHHHHHHHHhcCC--ceEEEECCCCCEEEE-------------------EeHHHHHHHHHhc--------
Confidence 46789999999999999998888 999999998999999 5566766532100
Q ss_pred HHHHHhhhcchhhhhhhhccccCCCCCCCCCCCCCccchhhhccccCCCccccccchhhhhcCCccEEeCCCCcHHHHHH
Q 016003 278 VVKERLKDKGLEGMLEHFDMSSSLMPYLSTSSSSDEESTATSKLTRSGKHSRSMSYSARMVRRAEAIVCHPTSSLMAVMI 357 (397)
Q Consensus 278 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~~~~sl~~v~~ 357 (397)
. . .+ .. . ....+..+++++.+++++.++++
T Consensus 53 -------------~----~--------------------~~----~~-~--------~~~~~~~~~~~~~~~~~~~~~~~ 82 (113)
T cd02205 53 -------------G----L--------------------DP----LV-T--------VGDVMTRDVVTVSPDTSLEEAAE 82 (113)
T ss_pred -------------c----C--------------------Cc----cc-c--------HHHHhcCCceecCCCcCHHHHHH
Confidence 0 0 00 00 0 01235668899999999999999
Q ss_pred HHHHcCCcEEEEEcCCCcEEEEEehHHHHH
Q 016003 358 QAIAHRVTYVWVIEDDCTLTGIVTFSDLLK 387 (397)
Q Consensus 358 ~m~~~~i~rl~VVd~~~~lvGvVt~~DIl~ 387 (397)
.|.+++.+++||+|++++++|+++..|+++
T Consensus 83 ~~~~~~~~~~~V~~~~~~~~G~i~~~dl~~ 112 (113)
T cd02205 83 LMLEHGIRRLPVVDDEGRLVGIVTRSDILR 112 (113)
T ss_pred HHHHcCCCEEEEEcCCCcEEEEEEHHHhhc
Confidence 999999999999999999999999999986
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generali |
| >cd04642 CBS_pair_29 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.7e-10 Score=97.32 Aligned_cols=114 Identities=22% Similarity=0.280 Sum_probs=86.7
Q ss_pred eEEeCCCCCHHHHHHHHh-cCCceEEEeccCcchhhhhhhcccccccccCCCCceeeeecHHHHHHHHHhccCCCCCCcc
Q 016003 108 VMHVEPSCSLLEAMDLML-GGAQNLVVPIKNRLSIKRKQQQKLSSSSLTNHNGREFCWLTQEDIIRFILSSISLFSPIPA 186 (397)
Q Consensus 108 ~~~V~~~~sL~~al~~m~-~g~~r~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IITq~DIi~~l~~~~~~l~~l~~ 186 (397)
+.++++++++.++++.|. +++..++|.+++ ++.+|+|++.|+.++..+..... ....
T Consensus 3 ~~~v~~~~~~~~a~~~~~~~~~~~i~V~d~~---------------------~~~~Giv~~~dl~~~~~~~~~~~-~~~~ 60 (126)
T cd04642 3 VVSIDSDERVLDAFKLMRKNNISGLPVVDEK---------------------GKLIGNISASDLKGLLLSPDDLL-LYRT 60 (126)
T ss_pred eEEECCCccHHHHHHHHHHhCCCcccEECCC---------------------CcEEEEEEHHHhhhhhcCcchhh-cccc
Confidence 678999999999999988 678888877532 46789999999998764321111 1000
Q ss_pred C-------C-ccccCCCCcCeEEEeCCCcHHHHHHHHHhcCCCCCEEEEEcCCCcEEEeeccCcccC
Q 016003 187 L-------S-IDSLGIISTDVVAVDYHSPASLALEAISRSLFDQTSVAVVDSDGFLIGEISPSTLGC 245 (397)
Q Consensus 187 ~-------t-i~~L~~~~~~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~is~~dl~~ 245 (397)
. . ......+..++.++.+++++.+|++.|.++++ +.+||||++|+++|+||..||.+
T Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~--~~l~Vvd~~~~~~Giit~~dil~ 125 (126)
T cd04642 61 ITFKELSEKFTDSDGVKSRPLITCTPSSTLKEVITKLVANKV--HRVWVVDEEGKPIGVITLTDIIS 125 (126)
T ss_pred hhhhhhhhhcccccccccCCCeEECCCCcHHHHHHHHHHhCC--cEEEEECCCCCEEEEEEHHHHhc
Confidence 0 0 11123567889999999999999999999999 99999999899999987666654
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener |
| >cd04634 CBS_pair_21 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=99.18 E-value=3.3e-10 Score=98.14 Aligned_cols=142 Identities=20% Similarity=0.299 Sum_probs=88.5
Q ss_pred cCeEEEeCCCcHHHHHHHHHhcCCCCCEEEEEcCCCcEEEeeccCcccCcchhHHHHHhhcChhhhhhhhccCCCCchhH
Q 016003 197 TDVVAVDYHSPASLALEAISRSLFDQTSVAVVDSDGFLIGEISPSTLGCCDETVAAAITTLSAGDLMAYIDCGGPPEDLV 276 (397)
Q Consensus 197 ~~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~is~~dl~~~~~~~~~~~~~ls~~Dl~~~~~~~~~~~~l~ 276 (397)
++++++.+++++.+|++.|.+.++ +++||+|+ |+++|+++ .+|++.++......+.+.
T Consensus 1 ~~~~~v~~~~~~~~~~~~~~~~~~--~~~~Vvd~-~~~~G~v~-------------------~~dl~~~~~~~~~~~~~~ 58 (143)
T cd04634 1 KNPITCNADDTISDAARLLRENKI--SGAPVLDG-GKLVGIVS-------------------ESDILKLLVTHDPSGNLW 58 (143)
T ss_pred CCcEEecCCCCHHHHHHHHHHcCC--CcceEeEC-CeEEEEec-------------------HHHHHHHHHhccCccccc
Confidence 357899999999999999999988 99999998 99999955 455544321100000000
Q ss_pred HHHHHHhhhcchhhhhhhhccccCCCCCCCCCCCCCccchhhhccccCCCccccccchhhhhcCCccEEeCCCCcHHHHH
Q 016003 277 RVVKERLKDKGLEGMLEHFDMSSSLMPYLSTSSSSDEESTATSKLTRSGKHSRSMSYSARMVRRAEAIVCHPTSSLMAVM 356 (397)
Q Consensus 277 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~~~~sl~~v~ 356 (397)
...........+..+ +. | ++.. + ........+...+|..++.+|.+++++.+++
T Consensus 59 ~~~~~~~~~~~~~~~---~~-----~--------------~~~~--~--~~~~~~~~~v~~~~~~~~~~v~~~~~l~~a~ 112 (143)
T cd04634 59 LPSPLELIELPLREF---IN-----W--------------EETK--R--ALTDAGKMKVRDIMTKKVITISPDASIEDAA 112 (143)
T ss_pred cCCcceeeeccchhe---ee-----h--------------HHHH--H--HHHHHhcCCHHHHcCCCCeEECCCCcHHHHH
Confidence 000000000000000 00 0 0000 0 0000001112234677899999999999999
Q ss_pred HHHHHcCCcEEEEEcCCCcEEEEEehHHHHH
Q 016003 357 IQAIAHRVTYVWVIEDDCTLTGIVTFSDLLK 387 (397)
Q Consensus 357 ~~m~~~~i~rl~VVd~~~~lvGvVt~~DIl~ 387 (397)
..|.+++.+++||+++ |+++|+||..|+++
T Consensus 113 ~~~~~~~~~~~~Vv~~-~~~~Gvvt~~dl~~ 142 (143)
T cd04634 113 ELMVRHKIKRLPVVED-GRLVGIVTRGDIIE 142 (143)
T ss_pred HHHHHcCCCEEEEEEC-CEEEEEEEHHHhhc
Confidence 9999999999999998 89999999999985
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener |
| >PRK07807 inosine 5-monophosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.18 E-value=3.7e-10 Score=116.81 Aligned_cols=121 Identities=22% Similarity=0.187 Sum_probs=100.8
Q ss_pred cccchhhhhhcCCCCeEEEeCChhHHHHHHHHhhCCCceEEEEccCCCCCCCCCCCCCCCeEEEEEehhHHHHHHhhcCC
Q 016003 5 LLADEVSDLCLGKPALRALSISAAIADALSALKNSDESFISVWDCNCCSNHRKLGDACECQCVGKVCMVDVICYLCKDSN 84 (397)
Q Consensus 5 ~~~~~v~dl~~~k~~li~v~~~~tv~~Al~~L~~~~I~s~PV~d~~~~~~~~~~~~~~~~~~vGiv~~~Dil~~l~~~~~ 84 (397)
+...+++++|. ++++++++++|+.+|++.|.++++.++||+|. +++++|+|+..|+... +
T Consensus 86 l~~VKv~~iMi--~~pvtv~~d~tv~eA~~~m~~~~~s~l~VVD~-------------~gklvGIVT~rDL~~~---~-- 145 (479)
T PRK07807 86 VAWVKSRDLVF--DTPVTLSPDDTVGDALALLPKRAHGAVVVVDE-------------EGRPVGVVTEADCAGV---D-- 145 (479)
T ss_pred Hhhcccccccc--cCCeEECCCCCHHHHHHHHHhcCCceEEEECC-------------CCeEEEEEeHHHHhcC---c--
Confidence 45567788874 67899999999999999999999999999996 3689999999998421 0
Q ss_pred CCChhhhhcCChhhhccCCCCCceEEeCCCCCHHHHHHHHh-cCCceEEEeccCcchhhhhhhcccccccccCCCCceee
Q 016003 85 SLSPSLALKQPVSVLLPQLLPPLVMHVEPSCSLLEAMDLML-GGAQNLVVPIKNRLSIKRKQQQKLSSSSLTNHNGREFC 163 (397)
Q Consensus 85 l~~~~~~~~~~V~~lm~~~~~~~~~~V~~~~sL~~al~~m~-~g~~r~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (397)
...+|+++|... ++++.++++|.+|++.|. +++++++|++++ ++++|
T Consensus 146 -------~~~~V~diMt~~----~itV~~d~sL~eAl~lM~~~~i~~LPVVD~~---------------------g~lvG 193 (479)
T PRK07807 146 -------RFTQVRDVMSTD----LVTLPAGTDPREAFDLLEAARVKLAPVVDAD---------------------GRLVG 193 (479)
T ss_pred -------cCCCHHHhccCC----ceEECCCCcHHHHHHHHHhcCCCEEEEEcCC---------------------CeEEE
Confidence 125799999755 899999999999999999 789999987532 35789
Q ss_pred eecHHHHHHHHHhc
Q 016003 164 WLTQEDIIRFILSS 177 (397)
Q Consensus 164 IITq~DIi~~l~~~ 177 (397)
+||+.||++.....
T Consensus 194 IIT~~DIl~~~~~~ 207 (479)
T PRK07807 194 VLTRTGALRATIYT 207 (479)
T ss_pred EEEHHHHHHHhhCC
Confidence 99999999987643
|
|
| >cd04632 CBS_pair_19 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=99.17 E-value=4.2e-10 Score=94.94 Aligned_cols=119 Identities=22% Similarity=0.311 Sum_probs=91.7
Q ss_pred CeEEEeCChhHHHHHHHHhhCCCceEEEEccCCCCCCCCCCCCCCCeEEEEEehhHHHHHHhhcC---CCC----Chhhh
Q 016003 19 ALRALSISAAIADALSALKNSDESFISVWDCNCCSNHRKLGDACECQCVGKVCMVDVICYLCKDS---NSL----SPSLA 91 (397)
Q Consensus 19 ~li~v~~~~tv~~Al~~L~~~~I~s~PV~d~~~~~~~~~~~~~~~~~~vGiv~~~Dil~~l~~~~---~l~----~~~~~ 91 (397)
+++.+++++|+.+|++.|.++++..+||++.+ ++++|+++..|+..++.... ... .....
T Consensus 2 ~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~~-------------~~~~G~it~~dl~~~~~~~~~~~~~~~~~~~~~~~ 68 (128)
T cd04632 2 DVITVREDDSVGKAINVLREHGISRLPVVDDN-------------GKLTGIVTRHDIVDFVVRDRDKARTGDRSGEKERM 68 (128)
T ss_pred CceEeCCCCCHHHHHHHHHHcCCCEEEEECCC-------------CcEEEEEEHHHHHHHHhhhhhhcchhhhhhhhhhh
Confidence 56789999999999999999999999999963 68999999999998764310 000 01123
Q ss_pred hcCChhhhccCCCCCceEEeCCCCCHHHHHHHHh-cCCceEEEeccCcchhhhhhhcccccccccCCCCceeeeecHHHH
Q 016003 92 LKQPVSVLLPQLLPPLVMHVEPSCSLLEAMDLML-GGAQNLVVPIKNRLSIKRKQQQKLSSSSLTNHNGREFCWLTQEDI 170 (397)
Q Consensus 92 ~~~~V~~lm~~~~~~~~~~V~~~~sL~~al~~m~-~g~~r~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IITq~DI 170 (397)
...++.++|... ++++.+++++.++++.|. ++.+.++|...+ .+++.+|+||+.|+
T Consensus 69 ~~~~~~~~~~~~----~~~v~~~~~l~~~l~~~~~~~~~~~~V~~~~-------------------~~~~~~Gvit~~di 125 (128)
T cd04632 69 LDLPVYDAMSSP----VITASPNDSVRDAVDRMLENDDSSVVVVTPD-------------------DDTKVVGILTKKDV 125 (128)
T ss_pred ccCcHHHHhcCC----CceECCCCcHHHHHHHHHhCCCCeEeEeccC-------------------CCCcEEEEEEhHhh
Confidence 456789998643 889999999999999999 677777765321 12467899999999
Q ss_pred HHH
Q 016003 171 IRF 173 (397)
Q Consensus 171 i~~ 173 (397)
+++
T Consensus 126 ~~~ 128 (128)
T cd04632 126 LRA 128 (128)
T ss_pred hcC
Confidence 864
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener |
| >PRK15094 magnesium/cobalt efflux protein CorC; Provisional | Back alignment and domain information |
|---|
Probab=99.16 E-value=8.4e-10 Score=107.62 Aligned_cols=163 Identities=16% Similarity=0.172 Sum_probs=121.8
Q ss_pred ccccchhhhhhcCCCCeEEEeCChhHHHHHHHHhhCCCceEEEEccCCCCCCCCCCCCCCCeEEEEEehhHHHHHHhhcC
Q 016003 4 SLLADEVSDLCLGKPALRALSISAAIADALSALKNSDESFISVWDCNCCSNHRKLGDACECQCVGKVCMVDVICYLCKDS 83 (397)
Q Consensus 4 ~~~~~~v~dl~~~k~~li~v~~~~tv~~Al~~L~~~~I~s~PV~d~~~~~~~~~~~~~~~~~~vGiv~~~Dil~~l~~~~ 83 (397)
-|...+|+|+|....++++++.++|++++++.+.+++.+.+||++.+ .++++|+|+..|++.++..+.
T Consensus 63 ~l~~~~V~diMtpr~~i~~l~~~~sl~e~~~~i~~~~~sr~PV~~~~------------~d~iiGiv~~kDll~~~~~~~ 130 (292)
T PRK15094 63 DIADQRVRDIMIPRSQMITLKRNQTLDECLDVIIESAHSRFPVISED------------KDHIEGILMAKDLLPFMRSDA 130 (292)
T ss_pred ccCCCEEeEEccchHHEEEEeCCCCHHHHHHHHHhcCCcEEEEecCC------------CCcEEEEEEHHHHHhHhhccC
Confidence 35678999999654479999999999999999999999999999853 268999999999997664211
Q ss_pred CCCChhhhhcCChhhhccCCCCCceEEeCCCCCHHHHHHHHh-cCCceEEEeccCcchhhhhhhcccccccccCCCCcee
Q 016003 84 NSLSPSLALKQPVSVLLPQLLPPLVMHVEPSCSLLEAMDLML-GGAQNLVVPIKNRLSIKRKQQQKLSSSSLTNHNGREF 162 (397)
Q Consensus 84 ~l~~~~~~~~~~V~~lm~~~~~~~~~~V~~~~sL~~al~~m~-~g~~r~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (397)
. ..++.++|.. .+.+.++.++.++++.|. ++.|.++|++.. |...
T Consensus 131 ~--------~~~l~~l~r~-----~~~V~e~~~l~~~L~~m~~~~~~~a~VvDe~---------------------G~vi 176 (292)
T PRK15094 131 E--------AFSMDKVLRQ-----AVVVPESKRVDRMLKEFRSQRYHMAIVIDEF---------------------GGVS 176 (292)
T ss_pred C--------cCCHHHHcCC-----CcCcCCCCcHHHHHHHHHhcCCEEEEEEeCC---------------------CCEE
Confidence 0 2347788842 458999999999999999 678888887532 3578
Q ss_pred eeecHHHHHHHHHhcc-CCCCCCccCCccccCCCCcCeEEEeCCCcHHHHHHHH
Q 016003 163 CWLTQEDIIRFILSSI-SLFSPIPALSIDSLGIISTDVVAVDYHSPASLALEAI 215 (397)
Q Consensus 163 ~IITq~DIi~~l~~~~-~~l~~l~~~ti~~L~~~~~~v~tv~~~~~~~~a~~~m 215 (397)
|+||..||++.+.... ++........+.. .....+.+...+++.+..+.+
T Consensus 177 GiVTleDIle~ivGei~de~d~~~~~~i~~---~~~~~~~v~G~~~l~dl~~~l 227 (292)
T PRK15094 177 GLVTIEDILELIVGEIEDEYDEEDDIDFRQ---LSRHTWTVRALASIEDFNEAF 227 (292)
T ss_pred EEeEHHHHHHHHhCCCccccccccccccEE---eCCCeEEEEeccCHHHHHHHh
Confidence 9999999999987532 1221111111222 234578899999998877765
|
|
| >TIGR00393 kpsF KpsF/GutQ family protein | Back alignment and domain information |
|---|
Probab=99.16 E-value=2.1e-10 Score=109.97 Aligned_cols=108 Identities=18% Similarity=0.205 Sum_probs=86.4
Q ss_pred CCCcC-eEEEeCCCcHHHHHHHHHhcCCCCCEEEEEcCCCcEEEeeccCcccCcchhHHHHHhhcChhhhhhhhccCCCC
Q 016003 194 IISTD-VVAVDYHSPASLALEAISRSLFDQTSVAVVDSDGFLIGEISPSTLGCCDETVAAAITTLSAGDLMAYIDCGGPP 272 (397)
Q Consensus 194 ~~~~~-v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~is~~dl~~~~~~~~~~~~~ls~~Dl~~~~~~~~~~ 272 (397)
+|.++ +.++.+++++.+|++.|.+.++ +.+||+|++|+++|+++ ..|++......
T Consensus 160 im~~~~~~~v~~~~~v~~a~~~~~~~~~--~~~~Vvd~~g~~~Givt-------------------~~dl~~~~~~~--- 215 (268)
T TIGR00393 160 LMQTTDLPLIAPTTSFKDALLEMSEKRL--GSAIVCDENNQLVGVFT-------------------DGDLRRALLGG--- 215 (268)
T ss_pred HhCCCCCCcCCCCCcHHHHHHHHhhcCC--cEEEEEeCCCCEEEEEE-------------------cHHHHHHHhcC---
Confidence 78888 9999999999999999998888 99999999999999954 55554311000
Q ss_pred chhHHHHHHHhhhcchhhhhhhhccccCCCCCCCCCCCCCccchhhhccccCCCccccccchhhhhcCCccEEeCCCCcH
Q 016003 273 EDLVRVVKERLKDKGLEGMLEHFDMSSSLMPYLSTSSSSDEESTATSKLTRSGKHSRSMSYSARMVRRAEAIVCHPTSSL 352 (397)
Q Consensus 273 ~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~~~~sl 352 (397)
... ..+..++|..++++|.+++++
T Consensus 216 -----------------------------~~~---------------------------~~~v~~im~~~~~~v~~~~~l 239 (268)
T TIGR00393 216 -----------------------------GSL---------------------------KSEVRDFMTLGPKTFKLDALL 239 (268)
T ss_pred -----------------------------Ccc---------------------------cCcHHHhCCCCCeEECCCCcH
Confidence 000 000123467788999999999
Q ss_pred HHHHHHHHHcCCcEEEEEcCCCcEEEEEe
Q 016003 353 MAVMIQAIAHRVTYVWVIEDDCTLTGIVT 381 (397)
Q Consensus 353 ~~v~~~m~~~~i~rl~VVd~~~~lvGvVt 381 (397)
.++++.|.+++++++||+|++|+++|+|+
T Consensus 240 ~~a~~~m~~~~~~~lpVvd~~g~l~GvI~ 268 (268)
T TIGR00393 240 LEALEFLERRKITSLVVVDDHNKVLGVLH 268 (268)
T ss_pred HHHHHHHHHcCCcEEEEECCCCeEEEEEC
Confidence 99999999999999999999899999985
|
This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli. |
| >cd04591 CBS_pair_EriC_assoc_euk_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes and bacteria | Back alignment and domain information |
|---|
Probab=99.16 E-value=3.3e-10 Score=92.99 Aligned_cols=100 Identities=23% Similarity=0.228 Sum_probs=83.7
Q ss_pred CeEEEeCCCcHHHHHHHHHhcCCCCCEEEEEcC---CCcEEEeeccCcccCcchhHHHHHhhcChhhhhhhhccCCCCch
Q 016003 198 DVVAVDYHSPASLALEAISRSLFDQTSVAVVDS---DGFLIGEISPSTLGCCDETVAAAITTLSAGDLMAYIDCGGPPED 274 (397)
Q Consensus 198 ~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~---~g~lvG~is~~dl~~~~~~~~~~~~~ls~~Dl~~~~~~~~~~~~ 274 (397)
.+..+.+++++.++.+.|.+.+. ..+||+|+ +|+++|+ ++..|++....
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~V~~~~~~~~~~~G~-------------------v~~~dl~~~~~------- 54 (105)
T cd04591 3 LVVLLPEGMTVEDLESLLSTTSH--NGFPVVDSTEESPRLVGY-------------------ILRSQLVVALK------- 54 (105)
T ss_pred ceEEecccccHHHHHHHHHhCCC--CCcceEcCCCCCCEEEEE-------------------EeHHHHHHHHH-------
Confidence 46788999999999999999888 89999998 6899999 44556543110
Q ss_pred hHHHHHHHhhhcchhhhhhhhccccCCCCCCCCCCCCCccchhhhccccCCCccccccchhhhhcCCccEEeCCCCcHHH
Q 016003 275 LVRVVKERLKDKGLEGMLEHFDMSSSLMPYLSTSSSSDEESTATSKLTRSGKHSRSMSYSARMVRRAEAIVCHPTSSLMA 354 (397)
Q Consensus 275 l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~~~~sl~~ 354 (397)
. +|..++.++.+++++.+
T Consensus 55 -------------------------------------------------~-------------~m~~~~~~v~~~~~l~~ 72 (105)
T cd04591 55 -------------------------------------------------N-------------YIDPSPFTVSPRTSLEK 72 (105)
T ss_pred -------------------------------------------------H-------------hccCCCceECCCCcHHH
Confidence 0 13457789999999999
Q ss_pred HHHHHHHcCCcEEEEEcCCCcEEEEEehHHHHHH
Q 016003 355 VMIQAIAHRVTYVWVIEDDCTLTGIVTFSDLLKV 388 (397)
Q Consensus 355 v~~~m~~~~i~rl~VVd~~~~lvGvVt~~DIl~~ 388 (397)
++..|.+++.+++||++ +|+++|+||+.|++++
T Consensus 73 ~~~~~~~~~~~~~pVv~-~~~~~Gvvt~~dl~~~ 105 (105)
T cd04591 73 VHQLFRKLGLRHLLVVD-EGRLVGIITRKDLLKA 105 (105)
T ss_pred HHHHHHHcCCCEEEEEE-CCeEEEEEEhhhhhcC
Confidence 99999999999999996 5899999999999864
|
These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS |
| >cd04643 CBS_pair_30 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=99.15 E-value=4.4e-10 Score=92.62 Aligned_cols=115 Identities=19% Similarity=0.186 Sum_probs=89.6
Q ss_pred CeEEEeCChhHHHHHHHHhhCCCceEEEEccCCCCCCCCCCCCCCCeEEEEEehhHHHHHHhhcCCCCChhhhhcCChhh
Q 016003 19 ALRALSISAAIADALSALKNSDESFISVWDCNCCSNHRKLGDACECQCVGKVCMVDVICYLCKDSNSLSPSLALKQPVSV 98 (397)
Q Consensus 19 ~li~v~~~~tv~~Al~~L~~~~I~s~PV~d~~~~~~~~~~~~~~~~~~vGiv~~~Dil~~l~~~~~l~~~~~~~~~~V~~ 98 (397)
+++++++++|+.+|++.|.++++..+||+|. +++++|+++..|++.++...... +.....+.++++
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~-------------~~~~~Giv~~~dl~~~~~~~~~~-~~~~~~~~~v~~ 67 (116)
T cd04643 2 EVAYVQDTNTLRHALLVLTKHGYSAIPVLDK-------------EGKYVGTISLTDILWKLKGLENL-DLERLVDLKVID 67 (116)
T ss_pred CcEEECCCCcHHHHHHHHHHCCCceeeeECC-------------CCcEEEEEeHHHHHHHhhccCch-hHHHHhCCcHHH
Confidence 5789999999999999999999999999996 36899999999999987642211 011112578999
Q ss_pred hccCCCCCceEEeCCCCCHHHHHHHHhcCCceEEEeccCcchhhhhhhcccccccccCCCCceeeeecHHHHHHH
Q 016003 99 LLPQLLPPLVMHVEPSCSLLEAMDLMLGGAQNLVVPIKNRLSIKRKQQQKLSSSSLTNHNGREFCWLTQEDIIRF 173 (397)
Q Consensus 99 lm~~~~~~~~~~V~~~~sL~~al~~m~~g~~r~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IITq~DIi~~ 173 (397)
+|... ++++.+++++.++++.|.+. ..++|.++ +++..|+||+.|++++
T Consensus 68 ~~~~~----~~~v~~~~~l~~a~~~~~~~-~~~~Vv~~---------------------~~~~~Gvit~~dil~~ 116 (116)
T cd04643 68 VMNTD----VPVIIDDADIEEILHLLIDQ-PFLPVVDD---------------------DGIFIGIITRREILKA 116 (116)
T ss_pred HhcCC----CceecCCCCHHHHHHHHhcC-CceeEEeC---------------------CCeEEEEEEHHHhhcC
Confidence 99654 88999999999999999842 34666542 2467899999999863
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener |
| >cd04623 CBS_pair_10 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=99.15 E-value=7e-10 Score=90.74 Aligned_cols=111 Identities=23% Similarity=0.264 Sum_probs=91.1
Q ss_pred CeEEEeCChhHHHHHHHHhhCCCceEEEEccCCCCCCCCCCCCCCCeEEEEEehhHHHHHHhhcCCCCChhhhhcCChhh
Q 016003 19 ALRALSISAAIADALSALKNSDESFISVWDCNCCSNHRKLGDACECQCVGKVCMVDVICYLCKDSNSLSPSLALKQPVSV 98 (397)
Q Consensus 19 ~li~v~~~~tv~~Al~~L~~~~I~s~PV~d~~~~~~~~~~~~~~~~~~vGiv~~~Dil~~l~~~~~l~~~~~~~~~~V~~ 98 (397)
++++++++.++.+|++.|.++++..+||+|.+ ++++|+++..|++.++..... .....++.+
T Consensus 2 ~~~~i~~~~~~~~~~~~~~~~~~~~~~V~~~~-------------~~~~Giv~~~~l~~~~~~~~~-----~~~~~~~~~ 63 (113)
T cd04623 2 DVITVRPDATVAEAAKLMAEKNIGAVVVVDDG-------------GRLVGIFSERDIVRKVALRGA-----SALDTPVSE 63 (113)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCeEEEECCC-------------CCEEEEEehHHHHHHHhhcCC-----CccccCHHH
Confidence 56889999999999999999999999999963 689999999999988764211 112357888
Q ss_pred hccCCCCCceEEeCCCCCHHHHHHHHh-cCCceEEEeccCcchhhhhhhcccccccccCCCCceeeeecHHHHHHH
Q 016003 99 LLPQLLPPLVMHVEPSCSLLEAMDLML-GGAQNLVVPIKNRLSIKRKQQQKLSSSSLTNHNGREFCWLTQEDIIRF 173 (397)
Q Consensus 99 lm~~~~~~~~~~V~~~~sL~~al~~m~-~g~~r~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IITq~DIi~~ 173 (397)
+|... +..+.++.++.++++.|. .+.++++|.++ ++.+|+||..|+++|
T Consensus 64 ~~~~~----~~~v~~~~~~~~~l~~~~~~~~~~~~Vv~~----------------------~~~~Gvit~~di~~~ 113 (113)
T cd04623 64 IMTRN----VITVTPDDTVDEAMALMTERRFRHLPVVDG----------------------GKLVGIVSIGDVVKA 113 (113)
T ss_pred hcCCC----cEEECCCCcHHHHHHHHHHcCCCEeEEEeC----------------------CEEEEEEEHHHhhcC
Confidence 88544 889999999999999998 78888888753 356899999999864
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener |
| >cd04636 CBS_pair_23 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=99.15 E-value=5.6e-10 Score=94.87 Aligned_cols=116 Identities=20% Similarity=0.227 Sum_probs=91.7
Q ss_pred CeEEEeCChhHHHHHHHHhhCCCceEEEEccCCCCCCCCCCCCCCCeEEEEEehhHHHHHHhhcCCCCCh----------
Q 016003 19 ALRALSISAAIADALSALKNSDESFISVWDCNCCSNHRKLGDACECQCVGKVCMVDVICYLCKDSNSLSP---------- 88 (397)
Q Consensus 19 ~li~v~~~~tv~~Al~~L~~~~I~s~PV~d~~~~~~~~~~~~~~~~~~vGiv~~~Dil~~l~~~~~l~~~---------- 88 (397)
+++++++++++.+|++.|.++++.++||+|.+ ++++|+++..|+++++.........
T Consensus 2 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~d~~-------------~~~~G~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 68 (132)
T cd04636 2 DVITVKKDDTLRDVVEILLTGKISGVPVVDNE-------------GRVVGIVSEGDLIRKIYKGKGLFYVTLLYSVIFLD 68 (132)
T ss_pred CCeEeCCCCcHHHHHHHHHHhCCCccceECCC-------------CCEEEEEeHHHHHHHHhccCCcccccccccccccc
Confidence 46889999999999999999999999999963 6899999999999987642111100
Q ss_pred ----hhhhcCChhhhccCCCCCceEEeCCCCCHHHHHHHHh-cCCceEEEeccCcchhhhhhhcccccccccCCCCceee
Q 016003 89 ----SLALKQPVSVLLPQLLPPLVMHVEPSCSLLEAMDLML-GGAQNLVVPIKNRLSIKRKQQQKLSSSSLTNHNGREFC 163 (397)
Q Consensus 89 ----~~~~~~~V~~lm~~~~~~~~~~V~~~~sL~~al~~m~-~g~~r~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (397)
.+....++.++|... ++.+.+++++.++++.|. .+.++++|.+. +..+|
T Consensus 69 ~~~~~~~~~~~v~~~~~~~----~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~----------------------~~~iG 122 (132)
T cd04636 69 ESKIKKLLGKKVEEIMTKK----VITVDEDTTIEDVARIMSKKNIKRLPVVDD----------------------GKLVG 122 (132)
T ss_pred hHHHHHHcCCCHHHhccCC----ceEECCCCcHHHHHHHHHHCCCCeeEEEEC----------------------CEEEE
Confidence 011123788888654 788999999999999998 78888888753 35689
Q ss_pred eecHHHHHHH
Q 016003 164 WLTQEDIIRF 173 (397)
Q Consensus 164 IITq~DIi~~ 173 (397)
+||+.|+++|
T Consensus 123 vit~~dl~~~ 132 (132)
T cd04636 123 IISRGDIIRS 132 (132)
T ss_pred EEEHHHhhcC
Confidence 9999999876
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener |
| >cd04593 CBS_pair_EriC_assoc_bac_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in bacteria and archaea | Back alignment and domain information |
|---|
Probab=99.14 E-value=8.9e-10 Score=91.03 Aligned_cols=113 Identities=24% Similarity=0.301 Sum_probs=91.4
Q ss_pred CCeEEEeCChhHHHHHHHHhhCCCceEEEEccCCCCCCCCCCCCCCCeEEEEEehhHHHHHHhhcCCCCChhhhhcCChh
Q 016003 18 PALRALSISAAIADALSALKNSDESFISVWDCNCCSNHRKLGDACECQCVGKVCMVDVICYLCKDSNSLSPSLALKQPVS 97 (397)
Q Consensus 18 ~~li~v~~~~tv~~Al~~L~~~~I~s~PV~d~~~~~~~~~~~~~~~~~~vGiv~~~Dil~~l~~~~~l~~~~~~~~~~V~ 97 (397)
|+..++++++++.+|++.|.++++..+||.|. +++++|+++..|+...+.+... ....+++
T Consensus 1 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~-------------~~~~~G~v~~~dl~~~~~~~~~------~~~~~~~ 61 (115)
T cd04593 1 PPPPVLSATTPLREAAEQLIESKHGSALVVDR-------------DGGVVGIITLPDLLRALEADEA------GEPSAVD 61 (115)
T ss_pred CCCcEeCCCCCHHHHHHHHHhCCCcEEEEEcC-------------CCCEEEEEEHHHHHHHHhcccc------cccccHH
Confidence 35678899999999999999999999999996 3689999999999987754211 1134578
Q ss_pred hhccCCCCCceEEeCCCCCHHHHHHHHh-cCCceEEEeccCcchhhhhhhcccccccccCCCCceeeeecHHHHHH
Q 016003 98 VLLPQLLPPLVMHVEPSCSLLEAMDLML-GGAQNLVVPIKNRLSIKRKQQQKLSSSSLTNHNGREFCWLTQEDIIR 172 (397)
Q Consensus 98 ~lm~~~~~~~~~~V~~~~sL~~al~~m~-~g~~r~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IITq~DIi~ 172 (397)
++|..+ ++++.+++++.++++.|. ++.++++|.++.. .+...|+||++||++
T Consensus 62 ~~~~~~----~~~v~~~~~l~~~l~~~~~~~~~~~~Vvd~~~-------------------~~~~~Gvit~~di~~ 114 (115)
T cd04593 62 EVATPP----LLTVHPDEPLAHALDRMASRGLRQLPVVDRGN-------------------PGQVLGLLTRENVLL 114 (115)
T ss_pred HhccCC----ceEECCCCCHHHHHHHHHHcCCceeeEEeCCC-------------------CCeEEEEEEhHHhhc
Confidence 888654 889999999999999999 7888998875321 146789999999975
|
These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS d |
| >cd04584 CBS_pair_ACT_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria | Back alignment and domain information |
|---|
Probab=99.14 E-value=5.8e-10 Score=92.62 Aligned_cols=120 Identities=24% Similarity=0.373 Sum_probs=86.8
Q ss_pred CeEEEeCCCcHHHHHHHHHhcCCCCCEEEEEcCCCcEEEeeccCcccCcchhHHHHHhhcChhhhhhhhccCCCCchhHH
Q 016003 198 DVVAVDYHSPASLALEAISRSLFDQTSVAVVDSDGFLIGEISPSTLGCCDETVAAAITTLSAGDLMAYIDCGGPPEDLVR 277 (397)
Q Consensus 198 ~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~is~~dl~~~~~~~~~~~~~ls~~Dl~~~~~~~~~~~~l~~ 277 (397)
++.++++++++.+|++.|.+.+. +.+||+|++|+++|+++ ..|++.....
T Consensus 2 ~~~~~~~~~~l~~a~~~~~~~~~--~~~~V~d~~~~~~G~v~-------------------~~~l~~~~~~--------- 51 (121)
T cd04584 2 DVVTITPTTTIAEALELMREHKI--RHLPVVDEEGRLVGIVT-------------------DRDLRDASPS--------- 51 (121)
T ss_pred CCEEECCCCCHHHHHHHHHHcCC--CcccEECCCCcEEEEEE-------------------HHHHHHHhhh---------
Confidence 46789999999999999998888 99999999999999955 4554431100
Q ss_pred HHHHHhhhcchhhhhhhhccccCCCCCCCCCCCCCccchhhhccccCCCccccccchhhhhcCCccEEeCCCCcHHHHHH
Q 016003 278 VVKERLKDKGLEGMLEHFDMSSSLMPYLSTSSSSDEESTATSKLTRSGKHSRSMSYSARMVRRAEAIVCHPTSSLMAVMI 357 (397)
Q Consensus 278 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~~~~sl~~v~~ 357 (397)
.+........ .. . + ..+...+|..+++++.+++++.++++
T Consensus 52 ----~~~~~~~~~~---~~-----~--------------~--------------~~~v~~~~~~~~~~i~~~~~l~~~~~ 91 (121)
T cd04584 52 ----PFTTLSEHEL---YL-----L--------------L--------------KMPVKEIMTKDVITVHPLDTVEEAAL 91 (121)
T ss_pred ----hcccchhhhh---hh-----h--------------c--------------CcCHHHHhhCCCeEECCCCcHHHHHH
Confidence 0000000000 00 0 0 00011245668899999999999999
Q ss_pred HHHHcCCcEEEEEcCCCcEEEEEehHHHHHH
Q 016003 358 QAIAHRVTYVWVIEDDCTLTGIVTFSDLLKV 388 (397)
Q Consensus 358 ~m~~~~i~rl~VVd~~~~lvGvVt~~DIl~~ 388 (397)
.|.+++.+++||+|+ |+++|+||..||+++
T Consensus 92 ~~~~~~~~~~~V~~~-~~~~Gvv~~~di~~~ 121 (121)
T cd04584 92 LMREHRIGCLPVVED-GRLVGIITETDLLRT 121 (121)
T ss_pred HHHHcCCCeEEEeeC-CEEEEEEEHHHhhcC
Confidence 999999999999998 899999999999863
|
Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The in |
| >cd04600 CBS_pair_HPP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the HPP motif domain | Back alignment and domain information |
|---|
Probab=99.13 E-value=9.1e-10 Score=91.97 Aligned_cols=117 Identities=20% Similarity=0.247 Sum_probs=92.2
Q ss_pred CCeEEEeCChhHHHHHHHHhhCCCceEEEEccCCCCCCCCCCCCCCCeEEEEEehhHHHHHHhhcCCCCCh----hhhhc
Q 016003 18 PALRALSISAAIADALSALKNSDESFISVWDCNCCSNHRKLGDACECQCVGKVCMVDVICYLCKDSNSLSP----SLALK 93 (397)
Q Consensus 18 ~~li~v~~~~tv~~Al~~L~~~~I~s~PV~d~~~~~~~~~~~~~~~~~~vGiv~~~Dil~~l~~~~~l~~~----~~~~~ 93 (397)
++++++++++++.+|++.|.++++..+||++. +++++|+++..|++.++......... .....
T Consensus 2 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~-------------~~~~~Giv~~~~l~~~~~~~~~~~~~~~~~~~~~~ 68 (124)
T cd04600 2 RDVVTVTPDTSLEEAWALLRRHRIKALPVVDG-------------DRRLVGIVTQRDLLRHARPDGRRPLRGRLRGRDKP 68 (124)
T ss_pred CCcEEeCCCCCHHHHHHHHHHcCCceeeEECC-------------CCCEEEEEEHHHHHhhhcccccchhhhhhhccccc
Confidence 57899999999999999999999999999986 36899999999999876532100000 00123
Q ss_pred CChhhhccCCCCCceEEeCCCCCHHHHHHHHh-cCCceEEEeccCcchhhhhhhcccccccccCCCCceeeeecHHHHHH
Q 016003 94 QPVSVLLPQLLPPLVMHVEPSCSLLEAMDLML-GGAQNLVVPIKNRLSIKRKQQQKLSSSSLTNHNGREFCWLTQEDIIR 172 (397)
Q Consensus 94 ~~V~~lm~~~~~~~~~~V~~~~sL~~al~~m~-~g~~r~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IITq~DIi~ 172 (397)
.++.++|... ++++.+++++.++++.|. ++.++++|.+++ +..+|+||+.|+++
T Consensus 69 ~~i~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~~~~~Vv~~~---------------------g~~~Gvit~~di~~ 123 (124)
T cd04600 69 ETVGDIMSPP----VVTVRPDTPIAELVPLLADGGHHHVPVVDED---------------------RRLVGIVTQTDLIA 123 (124)
T ss_pred ccHHHhccCC----CeeeCCCCcHHHHHHHHHhcCCCceeEEcCC---------------------CCEEEEEEhHHhhc
Confidence 4688888654 889999999999999999 788999887532 46789999999874
|
These proteins are integral membrane proteins with four transmembrane spanning helices. The function of these proteins is uncertain, but they are thought to be transporters. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. |
| >PF00571 CBS: CBS domain CBS domain web page | Back alignment and domain information |
|---|
Probab=99.13 E-value=2.2e-10 Score=83.38 Aligned_cols=54 Identities=26% Similarity=0.357 Sum_probs=51.4
Q ss_pred hhcCCccEEeCCCCcHHHHHHHHHHcCCcEEEEEcCCCcEEEEEehHHHHHHHH
Q 016003 337 MVRRAEAIVCHPTSSLMAVMIQAIAHRVTYVWVIEDDCTLTGIVTFSDLLKVFR 390 (397)
Q Consensus 337 ~~~~~~~it~~~~~sl~~v~~~m~~~~i~rl~VVd~~~~lvGvVt~~DIl~~l~ 390 (397)
++|.++++++++++++.++++.|.+++++++||+|++|+++|+||.+||++++.
T Consensus 3 ~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~d~~~~~~G~is~~dl~~~l~ 56 (57)
T PF00571_consen 3 DIMTPPPITVSPDDSLEEALEIMRKNGISRLPVVDEDGKLVGIISRSDLLKALL 56 (57)
T ss_dssp HHSBSSSEEEETTSBHHHHHHHHHHHTSSEEEEESTTSBEEEEEEHHHHHHHHH
T ss_pred ECCcCCCEEEcCcCcHHHHHHHHHHcCCcEEEEEecCCEEEEEEEHHHHHhhhh
Confidence 357889999999999999999999999999999999999999999999999985
|
Mutations in the CBS domain of Swiss:P35520 lead to homocystinuria.; InterPro: IPR000644 CBS (cystathionine-beta-synthase) domains are small intracellular modules, mostly found in two or four copies within a protein, that occur in a variety of proteins in bacteria, archaea, and eukaryotes [, ]. Tandem pairs of CBS domains can act as binding domains for adenosine derivatives and may regulate the activity of attached enzymatic or other domains []. In some cases, CBS domains may act as sensors of cellular energy status by being activated by AMP and inhibited by ATP []. In chloride ion channels, the CBS domains have been implicated in intracellular targeting and trafficking, as well as in protein-protein interactions, but results vary with different channels: in the CLC-5 channel, the CBS domain was shown to be required for trafficking [], while in the CLC-1 channel, the CBS domain was shown to be critical for channel function, but not necessary for trafficking []. Recent experiments revealing that CBS domains can bind adenosine-containing ligands such ATP, AMP, or S-adenosylmethionine have led to the hypothesis that CBS domains function as sensors of intracellular metabolites [, ]. Crystallographic studies of CBS domains have shown that pairs of CBS sequences form a globular domain where each CBS unit adopts a beta-alpha-beta-beta-alpha pattern []. Crystal structure of the CBS domains of the AMP-activated protein kinase in complexes with AMP and ATP shows that the phosphate groups of AMP/ATP lie in a surface pocket at the interface of two CBS domains, which is lined with basic residues, many of which are associated with disease-causing mutations []. In humans, mutations in conserved residues within CBS domains cause a variety of human hereditary diseases, including (with the gene mutated in parentheses): homocystinuria (cystathionine beta-synthase); Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase); retinitis pigmentosa (IMP dehydrogenase-1); congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members).; GO: 0005515 protein binding; PDB: 3JTF_A 3TE5_C 3TDH_C 3T4N_C 2QLV_C 3OI8_A 3LV9_A 2QH1_B 1PVM_B 3LQN_A .... |
| >cd04801 CBS_pair_M50_like This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the metalloprotease peptidase M50 | Back alignment and domain information |
|---|
Probab=99.13 E-value=9.2e-10 Score=90.80 Aligned_cols=107 Identities=20% Similarity=0.229 Sum_probs=84.5
Q ss_pred eEEeCCCCCHHHHHHHHh-cC-CceEEEeccCcchhhhhhhcccccccccCCCCceeeeecHHHHHHHHHhccCCCCCCc
Q 016003 108 VMHVEPSCSLLEAMDLML-GG-AQNLVVPIKNRLSIKRKQQQKLSSSSLTNHNGREFCWLTQEDIIRFILSSISLFSPIP 185 (397)
Q Consensus 108 ~~~V~~~~sL~~al~~m~-~g-~~r~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IITq~DIi~~l~~~~~~l~~l~ 185 (397)
+.++.++.++.++++.|. ++ .++++|.+++ ++.+|+++..|+++...+.. .
T Consensus 3 ~~~~~~~~~l~~~~~~~~~~~~~~~~~V~d~~---------------------~~~~G~v~~~dl~~~~~~~~------~ 55 (114)
T cd04801 3 FPTVPAHLTLREFVREYVLGSNQRRFVVVDNE---------------------GRYVGIISLADLRAIPTSQW------A 55 (114)
T ss_pred cceeCCCCCHHHHHHHHhccCCceeEEEEcCC---------------------CcEEEEEEHHHHHHHHHhhc------c
Confidence 678999999999999886 54 6777776431 46789999999998764211 1
Q ss_pred cCCccccCCCCc--CeEEEeCCCcHHHHHHHHHhcCCCCCEEEEEcCCCcEEEeeccCcccC
Q 016003 186 ALSIDSLGIIST--DVVAVDYHSPASLALEAISRSLFDQTSVAVVDSDGFLIGEISPSTLGC 245 (397)
Q Consensus 186 ~~ti~~L~~~~~--~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~is~~dl~~ 245 (397)
..++.+ +|.. .+.++.+++++.+|++.|.+++. +.+||+|++|+++|++|..||.+
T Consensus 56 ~~~v~~--~~~~~~~~~~v~~~~~l~~a~~~~~~~~~--~~l~Vv~~~~~~~Gvl~~~di~~ 113 (114)
T cd04801 56 QTTVIQ--VMTPAAKLVTVLSEESLAEVLKLLEEQGL--DELAVVEDSGQVIGLITEADLLR 113 (114)
T ss_pred ccchhh--hhcccccceEECCCCcHHHHHHHHHHCCC--CeeEEEcCCCcEEEEEeccceec
Confidence 344555 5653 37799999999999999999999 99999998899999988777654
|
CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. |
| >KOG1764 consensus 5'-AMP-activated protein kinase, gamma subunit [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=99.13 E-value=1.7e-09 Score=108.88 Aligned_cols=193 Identities=20% Similarity=0.251 Sum_probs=148.1
Q ss_pred CCCeEEEeCChhHHHHHHHHhhCCCceEEEEccCCCCCCCCCCCCCCCeEEEEEehhHHHHHHhhcCCCCChhhhhcCCh
Q 016003 17 KPALRALSISAAIADALSALKNSDESFISVWDCNCCSNHRKLGDACECQCVGKVCMVDVICYLCKDSNSLSPSLALKQPV 96 (397)
Q Consensus 17 k~~li~v~~~~tv~~Al~~L~~~~I~s~PV~d~~~~~~~~~~~~~~~~~~vGiv~~~Dil~~l~~~~~l~~~~~~~~~~V 96 (397)
+++++.+.+..++-+|...|.++++.++||.|.+ .++++.+++..-|+.|+-...........+..++
T Consensus 161 ~~~~~~i~p~~s~l~~~~~l~~~~~~rvpv~d~~------------~~~v~~ilt~~rIl~~l~~~~~~~~~~~~l~~s~ 228 (381)
T KOG1764|consen 161 KPPFVSISPESSLLDAVLLLIKSRIHRVPVIDPE------------TGEVLYILTQRRILKFLWLNGRLLPLPSLLSKSL 228 (381)
T ss_pred CCCceeecCcHHHHHHHHHHHhCCccceeeeccc------------ccceeeehhHHHHHHHHHHhhcccccHHHhhCCH
Confidence 3556999999999999999999999999999953 2589999999999999975322212345667777
Q ss_pred hhhccCCCCCceEEeCCCCCHHHHHHHHh-cCCceEEEeccCcchhhhhhhcccccccccCCCCceeeeecHHHHHHHHH
Q 016003 97 SVLLPQLLPPLVMHVEPSCSLLEAMDLML-GGAQNLVVPIKNRLSIKRKQQQKLSSSSLTNHNGREFCWLTQEDIIRFIL 175 (397)
Q Consensus 97 ~~lm~~~~~~~~~~V~~~~sL~~al~~m~-~g~~r~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IITq~DIi~~l~ 175 (397)
.++--- ..+.+..+..++++.+|++.|. +++..+||++.. +..+++++..|+.....
T Consensus 229 ~dl~ig-~~~~i~~i~~~~~v~~al~~m~~~~is~lpvV~~~---------------------g~~v~~~s~~Dv~~l~~ 286 (381)
T KOG1764|consen 229 SDLGIG-TWSNIASISEDTPVIEALKIMSERRISALPVVDEN---------------------GKKVGNYSRFDVIHLAR 286 (381)
T ss_pred HHhCcc-hhhhheeecCCCcHHHHHHHHHhcCcCcceEEcCC---------------------Cceecceehhhhhhhhh
Confidence 776421 1334788999999999999999 799999998643 33488999999987766
Q ss_pred hccCCCCCCccCC-ccc----cCCCCcCeEEEeCCCcHHHHHHHHHhcCCCCCEEEEEcCCCcEEEeeccCcccCcchhH
Q 016003 176 SSISLFSPIPALS-IDS----LGIISTDVVAVDYHSPASLALEAISRSLFDQTSVAVVDSDGFLIGEISPSTLGCCDETV 250 (397)
Q Consensus 176 ~~~~~l~~l~~~t-i~~----L~~~~~~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~is~~dl~~~~~~~ 250 (397)
+.. +..+ ..+ +++ .++=...|+++.++.++..++..|..+++ ..+.|||++|+++|+
T Consensus 287 ~~~--~~~~-~~~~l~~~~~~~~~~~~~vvtc~~~ssL~~vi~~lv~~~v--HRl~VVd~~~~l~Gv------------- 348 (381)
T KOG1764|consen 287 EGT--YNNL-DLSCLSEALSHRPIRFEGVVTCRPTSTLAEVIDKLVAHRV--HRLWVVDEDGVLVGV------------- 348 (381)
T ss_pred cCc--cCcc-chhHHHHHhhhcccccCccEEEeecchHHHHHHHHHhcCc--eEEEEEcCCCcEEEE-------------
Confidence 431 2111 111 222 12223459999999999999999999999 999999999999999
Q ss_pred HHHHhhcChhhhhhhhc
Q 016003 251 AAAITTLSAGDLMAYID 267 (397)
Q Consensus 251 ~~~~~~ls~~Dl~~~~~ 267 (397)
+|-+|+..++.
T Consensus 349 ------vSLsDil~~l~ 359 (381)
T KOG1764|consen 349 ------ISLSDILSYLV 359 (381)
T ss_pred ------eeHHHHHHHHH
Confidence 56788877553
|
|
| >COG4109 Predicted transcriptional regulator containing CBS domains [Transcription] | Back alignment and domain information |
|---|
Probab=99.12 E-value=4.2e-10 Score=108.92 Aligned_cols=114 Identities=19% Similarity=0.239 Sum_probs=95.1
Q ss_pred CCC--cCeEEEeCCCcHHHHHHHHHhcCCCCCEEEEEcCCCcEEEeeccCcccCcchhHHHHHhhcChhhhhhhhccCCC
Q 016003 194 IIS--TDVVAVDYHSPASLALEAISRSLFDQTSVAVVDSDGFLIGEISPSTLGCCDETVAAAITTLSAGDLMAYIDCGGP 271 (397)
Q Consensus 194 ~~~--~~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~is~~dl~~~~~~~~~~~~~ls~~Dl~~~~~~~~~ 271 (397)
+|+ .+.....+++++.+-.++-.+.+. +..||||...+++|++ +.+|...-.+
T Consensus 193 i~~P~~~~~yL~~~d~v~d~~~l~~kt~~--sRfPVvn~~~kvvGvV-------------------t~rDv~~~~~---- 247 (432)
T COG4109 193 IMTPLEDTSYLRETDTVEDWLDLVEKTGH--SRFPVVNRSMKVVGVV-------------------TMRDVLDKKP---- 247 (432)
T ss_pred hccccccceeccccccHHHHHHHHHHcCC--CccceecccceEEEEE-------------------EehhhhcCCC----
Confidence 566 567778899999999999999999 9999999999999994 4566543100
Q ss_pred CchhHHHHHHHhhhcchhhhhhhhccccCCCCCCCCCCCCCccchhhhccccCCCccccccchhhhhcCCccEEeCCCCc
Q 016003 272 PEDLVRVVKERLKDKGLEGMLEHFDMSSSLMPYLSTSSSSDEESTATSKLTRSGKHSRSMSYSARMVRRAEAIVCHPTSS 351 (397)
Q Consensus 272 ~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~~~~s 351 (397)
+..+ ..+|+++++|+++.+|
T Consensus 248 ----------------------------------------------------~t~i--------eKVMtknp~tv~~~ts 267 (432)
T COG4109 248 ----------------------------------------------------STTI--------EKVMTKNPITVRAKTS 267 (432)
T ss_pred ----------------------------------------------------CccH--------HHHhccCCeeecccch
Confidence 0000 1258999999999999
Q ss_pred HHHHHHHHHHcCCcEEEEEcCCCcEEEEEehHHHHHHHHHH
Q 016003 352 LMAVMIQAIAHRVTYVWVIEDDCTLTGIVTFSDLLKVFRKH 392 (397)
Q Consensus 352 l~~v~~~m~~~~i~rl~VVd~~~~lvGvVt~~DIl~~l~~~ 392 (397)
++.++.+|+-.++.-+||||++.+++||||+.|+|+.+...
T Consensus 268 VAsvaq~MiwE~iem~PVv~~n~~llGiitR~dvlk~lq~~ 308 (432)
T COG4109 268 VASVAQMMIWEGIEMLPVVDSNNTLLGIITRQDVLKSLQMI 308 (432)
T ss_pred HHHHHHHHHhccceeeeEEcCCceEEEEEEHHHHHHHHHHh
Confidence 99999999999999999999999999999999999998654
|
|
| >cd04631 CBS_pair_18 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=99.12 E-value=8.8e-10 Score=92.19 Aligned_cols=118 Identities=20% Similarity=0.285 Sum_probs=93.1
Q ss_pred CeEEEeCChhHHHHHHHHhhCCCceEEEEccCCCCCCCCCCCCCCCeEEEEEehhHHHHHHhhcCCCCC-----hhhhhc
Q 016003 19 ALRALSISAAIADALSALKNSDESFISVWDCNCCSNHRKLGDACECQCVGKVCMVDVICYLCKDSNSLS-----PSLALK 93 (397)
Q Consensus 19 ~li~v~~~~tv~~Al~~L~~~~I~s~PV~d~~~~~~~~~~~~~~~~~~vGiv~~~Dil~~l~~~~~l~~-----~~~~~~ 93 (397)
++++++++.++.+|++.|.++++..+||+|.+ .++++|+++..|++.++.+...... ......
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~i~V~d~~------------~~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~ 69 (125)
T cd04631 2 DVVTVPPTTPIMEAAKIMVRNGFRRLPVVDEG------------TGKLVGIITATDILKYLGGGEKFNKIKTGNGLEAIN 69 (125)
T ss_pred CceEeCCCCcHHHHHHHHHHcCcccceeEeCC------------CCEEEEEEEHHHHHHHhhccchhccccccccchhhh
Confidence 57889999999999999999999999999962 1689999999999988864221100 011234
Q ss_pred CChhhhccCCCCCceEEeCCCCCHHHHHHHHh-cCCceEEEeccCcchhhhhhhcccccccccCCCCceeeeecHHHHHH
Q 016003 94 QPVSVLLPQLLPPLVMHVEPSCSLLEAMDLML-GGAQNLVVPIKNRLSIKRKQQQKLSSSSLTNHNGREFCWLTQEDIIR 172 (397)
Q Consensus 94 ~~V~~lm~~~~~~~~~~V~~~~sL~~al~~m~-~g~~r~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IITq~DIi~ 172 (397)
.++.++|... ++.+.+++++.++++.|. .+.+.++|.+++ +...|+||..||++
T Consensus 70 ~~~~~~~~~~----~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~---------------------~~~~Gvit~~di~~ 124 (125)
T cd04631 70 EPVRSIMTRN----VITITPDDSIKDAAELMLEKRVGGLPVVDDD---------------------GKLVGIVTERDLLK 124 (125)
T ss_pred cCHHHHhcCC----ceEeCCCCcHHHHHHHHHHcCCceEEEEcCC---------------------CcEEEEEEHHHhhc
Confidence 6788888654 899999999999999999 678888876532 35789999999987
Q ss_pred H
Q 016003 173 F 173 (397)
Q Consensus 173 ~ 173 (397)
|
T Consensus 125 ~ 125 (125)
T cd04631 125 A 125 (125)
T ss_pred C
Confidence 4
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener |
| >TIGR00400 mgtE Mg2+ transporter (mgtE) | Back alignment and domain information |
|---|
Probab=99.12 E-value=1.3e-10 Score=119.74 Aligned_cols=176 Identities=16% Similarity=0.221 Sum_probs=132.8
Q ss_pred cCChhhhccCCCCCceEEeCCCCCHHHHHHHHhc------CCceEEEeccCcchhhhhhhcccccccccCCCCceeeeec
Q 016003 93 KQPVSVLLPQLLPPLVMHVEPSCSLLEAMDLMLG------GAQNLVVPIKNRLSIKRKQQQKLSSSSLTNHNGREFCWLT 166 (397)
Q Consensus 93 ~~~V~~lm~~~~~~~~~~V~~~~sL~~al~~m~~------g~~r~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IIT 166 (397)
..+++++|... +..++++.++.++++.|.+ +...++|.++ +++..|+|+
T Consensus 130 e~tvg~iMt~~----~~~v~~~~tv~eal~~l~~~~~~~~~~~~v~Vvd~---------------------~~~l~GvV~ 184 (449)
T TIGR00400 130 DDSAGRIMTIE----YVELKEDYTVGKALDYIRRVAKTKEDIYTLYVTNE---------------------SKHLKGVLS 184 (449)
T ss_pred cchHHHhCcCc----eEEECCCCcHHHHHHHHHhcCCCccceeEEEEECC---------------------CCeEEEEEE
Confidence 46799999755 8999999999999998862 2223343332 246789999
Q ss_pred HHHHHHHHHhccCCCCCCccCCccccCCCCcCeEEEeCCCcHHHHHHHHHhcCCCCCEEEEEcCCCcEEEeeccCcccCc
Q 016003 167 QEDIIRFILSSISLFSPIPALSIDSLGIISTDVVAVDYHSPASLALEAISRSLFDQTSVAVVDSDGFLIGEISPSTLGCC 246 (397)
Q Consensus 167 q~DIi~~l~~~~~~l~~l~~~ti~~L~~~~~~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~is~~dl~~~ 246 (397)
..|++.. ....++++ +|+++++++.+++++.+|++.|.++++ .++||||++|+++|+|
T Consensus 185 l~dLl~a----------~~~~~v~~--im~~~~~~v~~~~~~~eal~~m~~~~~--~~lpVVD~~g~lvGiI-------- 242 (449)
T TIGR00400 185 IRDLILA----------KPEEILSS--IMRSSVFSIVGVNDQEEVARLIQKYDF--LAVPVVDNEGRLVGIV-------- 242 (449)
T ss_pred HHHHhcC----------CCCCcHHH--HhCCCCeeECCCCCHHHHHHHHHHcCC--CEEeEEcCCCeEEEEE--------
Confidence 9998641 12345665 788899999999999999999999988 9999999999999994
Q ss_pred chhHHHHHhhcChhhhhhhhccCCCCchhHHHHHHHhhhcchhhhhhhhccccCCCCCCCCCCCCCccchhhhccccCCC
Q 016003 247 DETVAAAITTLSAGDLMAYIDCGGPPEDLVRVVKERLKDKGLEGMLEHFDMSSSLMPYLSTSSSSDEESTATSKLTRSGK 326 (397)
Q Consensus 247 ~~~~~~~~~~ls~~Dl~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (397)
+..|++..+... . ++
T Consensus 243 -----------t~~Dil~~l~~~-----------------~----------------------------~e--------- 257 (449)
T TIGR00400 243 -----------TVDDIIDVIQSE-----------------A----------------------------TE--------- 257 (449)
T ss_pred -----------EHHHHHHHHHhh-----------------h----------------------------HH---------
Confidence 566776533110 0 01
Q ss_pred ccccccchhhhhcCCccEEeCCCCcHHHHHHHHHHcCCcEEEEEcCCCcEEEEEehHHHHHHHHHHHhh
Q 016003 327 HSRSMSYSARMVRRAEAIVCHPTSSLMAVMIQAIAHRVTYVWVIEDDCTLTGIVTFSDLLKVFRKHLET 395 (397)
Q Consensus 327 ~~~~~~~~~~~~~~~~~it~~~~~sl~~v~~~m~~~~i~rl~VVd~~~~lvGvVt~~DIl~~l~~~~~~ 395 (397)
++|....+++.+++.+..++.+|.++|+..++|. .+.|++| ..++..|...+++
T Consensus 258 ----------d~~~~~gv~~~~~~~l~~~~~~~~~~R~~wL~v~----~~~~~~t-~~ii~~f~~~l~~ 311 (449)
T TIGR00400 258 ----------DFYMIAAVKPLDDSYFDTSILVMAKNRIIWLLVL----LVSSTFT-ATIISNYEDLLLS 311 (449)
T ss_pred ----------HHHHhcCCCCCcchhhhchHHHHHHhccchHHHH----HHHHHHH-HHHHHHHHHHHHH
Confidence 1233345566678899999999999999999886 6889999 9999988776654
|
This family of prokaryotic proteins models a class of Mg++ transporter first described in Bacillus firmus. May form a homodimer. |
| >cd04598 CBS_pair_GGDEF_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain | Back alignment and domain information |
|---|
Probab=99.12 E-value=4.8e-10 Score=92.98 Aligned_cols=113 Identities=20% Similarity=0.280 Sum_probs=84.1
Q ss_pred CeEEEeCCCcHHHHHHHHHhcC-CCCCEEEEEcCCCcEEEeeccCcccCcchhHHHHHhhcChhhhhhhhccCCCCchhH
Q 016003 198 DVVAVDYHSPASLALEAISRSL-FDQTSVAVVDSDGFLIGEISPSTLGCCDETVAAAITTLSAGDLMAYIDCGGPPEDLV 276 (397)
Q Consensus 198 ~v~tv~~~~~~~~a~~~m~~~~-i~~s~vpVVd~~g~lvG~is~~dl~~~~~~~~~~~~~ls~~Dl~~~~~~~~~~~~l~ 276 (397)
++.++++++++.+|++.|.+.+ + +.+||+|+ |+++|++ +..|++......
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~Vvd~-~~~~G~v-------------------~~~~l~~~~~~~------- 52 (119)
T cd04598 2 PAPTVSPDTTVNDVLERFERDPDL--SALAVVDD-GRPVGLI-------------------MREALMELLSTP------- 52 (119)
T ss_pred CcCccCCCCcHHHHHHHHHhCCCc--cEEEEEEC-CeeEEEE-------------------EHHHHHHHHhch-------
Confidence 5677899999999999998876 7 89999999 9999994 456655422100
Q ss_pred HHHHHHhhhcchhhhhhhhccccCCCCCCCCCCCCCccchhhhccccCCCccccccchhhhhcCCccEEeCCCCcHHHHH
Q 016003 277 RVVKERLKDKGLEGMLEHFDMSSSLMPYLSTSSSSDEESTATSKLTRSGKHSRSMSYSARMVRRAEAIVCHPTSSLMAVM 356 (397)
Q Consensus 277 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~~~~sl~~v~ 356 (397)
+ -..+ .. . ....+.|..++++|.+++++.+++
T Consensus 53 -----~-----~~~~---~~---------------------------~--------~~v~~~~~~~~~~v~~~~~~~~~~ 84 (119)
T cd04598 53 -----Y-----GRAL---YG---------------------------K--------KPVSEVMDPDPLIVEADTPLEEVS 84 (119)
T ss_pred -----h-----hHHH---Hc---------------------------C--------CcHHHhcCCCcEEecCCCCHHHHH
Confidence 0 0000 00 0 001134677899999999999999
Q ss_pred HHHHHcCCcE---EEEEcCCCcEEEEEehHHHHH
Q 016003 357 IQAIAHRVTY---VWVIEDDCTLTGIVTFSDLLK 387 (397)
Q Consensus 357 ~~m~~~~i~r---l~VVd~~~~lvGvVt~~DIl~ 387 (397)
..|.+++..+ .|||+++|+++|+||..|+++
T Consensus 85 ~~~~~~~~~~~~~~~vv~~~~~~~Gvvs~~di~~ 118 (119)
T cd04598 85 RLATGRDSQNLYDGFIVTEEGRYLGIGTVKDLLR 118 (119)
T ss_pred HHHHcCCcccccccEEEeeCCeEEEEEEHHHHhc
Confidence 9999998754 479988899999999999986
|
The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. |
| >cd04607 CBS_pair_NTP_transferase_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain associated with the NTP (Nucleotidyl transferase) domain downstream | Back alignment and domain information |
|---|
Probab=99.12 E-value=1.3e-09 Score=89.70 Aligned_cols=107 Identities=25% Similarity=0.259 Sum_probs=89.2
Q ss_pred eEEEeCChhHHHHHHHHhhCCCceEEEEccCCCCCCCCCCCCCCCeEEEEEehhHHHHHHhhcCCCCChhhhhcCChhhh
Q 016003 20 LRALSISAAIADALSALKNSDESFISVWDCNCCSNHRKLGDACECQCVGKVCMVDVICYLCKDSNSLSPSLALKQPVSVL 99 (397)
Q Consensus 20 li~v~~~~tv~~Al~~L~~~~I~s~PV~d~~~~~~~~~~~~~~~~~~vGiv~~~Dil~~l~~~~~l~~~~~~~~~~V~~l 99 (397)
.+++++++++.+|++.|.++++..+||.+.+ ++++|+++..|++..+.+.. ..+.++.++
T Consensus 4 ~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~-------------~~~~G~v~~~dl~~~~~~~~-------~~~~~v~~~ 63 (113)
T cd04607 4 QLLVSPDASILDALRKIDKNALRIVLVVDEN-------------GRLLGTVTDGDIRRALLKGL-------SLDDPVSEV 63 (113)
T ss_pred ceEECCCCCHHHHHHHHHhcCcCEEEEECCC-------------CCEEEEEEcHHHHHHHhcCC-------CcCCCHHHh
Confidence 4678999999999999999999999999963 68999999999988765421 124578899
Q ss_pred ccCCCCCceEEeCCCCCHHHHHHHHh-cCCceEEEeccCcchhhhhhhcccccccccCCCCceeeeecHHHHH
Q 016003 100 LPQLLPPLVMHVEPSCSLLEAMDLML-GGAQNLVVPIKNRLSIKRKQQQKLSSSSLTNHNGREFCWLTQEDII 171 (397)
Q Consensus 100 m~~~~~~~~~~V~~~~sL~~al~~m~-~g~~r~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IITq~DIi 171 (397)
|... +..+.+++++.++++.|. ++.++++|++++ ++.+|+||+.||+
T Consensus 64 ~~~~----~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~---------------------~~~~Gvit~~di~ 111 (113)
T cd04607 64 MNRN----PITAKVGSSREEILALMRERSIRHLPILDEE---------------------GRVVGLATLDDLL 111 (113)
T ss_pred hcCC----CEEEcCCCCHHHHHHHHHHCCCCEEEEECCC---------------------CCEEEEEEhHHhc
Confidence 8644 789999999999999999 789999987532 4578999999986
|
CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. |
| >COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.11 E-value=3.1e-10 Score=115.83 Aligned_cols=124 Identities=27% Similarity=0.280 Sum_probs=105.5
Q ss_pred cchhhhhhcCCCCeEEEeCChhHHHHHHHHhhCCCceEEEEccCCCCCCCCCCCCCCCeEEEEEehhHHHHHHhhcCCCC
Q 016003 7 ADEVSDLCLGKPALRALSISAAIADALSALKNSDESFISVWDCNCCSNHRKLGDACECQCVGKVCMVDVICYLCKDSNSL 86 (397)
Q Consensus 7 ~~~v~dl~~~k~~li~v~~~~tv~~Al~~L~~~~I~s~PV~d~~~~~~~~~~~~~~~~~~vGiv~~~Dil~~l~~~~~l~ 86 (397)
-++|++++. .+.+++++.+|+.+|...|.++|++++-|++.+ +...||||..|+...+..+.
T Consensus 148 ~trv~~~~~--~~~~~v~~~~~i~~aa~km~~~gv~s~v~l~~~-------------~~~~GIvT~~dl~~~v~~~g--- 209 (610)
T COG2905 148 LTRVGEVKT--LPAVTVSPQASIQDAARKMKDEGVSSLVVLDDS-------------GPLLGIVTRKDLRSRVIADG--- 209 (610)
T ss_pred HHHHHHHhc--CCCcccCccCcHHHHHHHHHhcCCCeEEEEcCC-------------CCccceeehHHHHHHHHhcC---
Confidence 467888874 567999999999999999999999999998864 57999999999999876532
Q ss_pred ChhhhhcCChhhhccCCCCCceEEeCCCCCHHHHHHHHh-cCCceEEEeccCcchhhhhhhcccccccccCCCCceeeee
Q 016003 87 SPSLALKQPVSVLLPQLLPPLVMHVEPSCSLLEAMDLML-GGAQNLVVPIKNRLSIKRKQQQKLSSSSLTNHNGREFCWL 165 (397)
Q Consensus 87 ~~~~~~~~~V~~lm~~~~~~~~~~V~~~~sL~~al~~m~-~g~~r~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~II 165 (397)
.-...+|+++|+.+ +++|++++-+++|+-+|+ +++||++|..+ |++.|||
T Consensus 210 ---~~~~~~V~evmT~p----~~svd~~~~~feAml~m~r~~I~hl~V~e~----------------------gq~~Gil 260 (610)
T COG2905 210 ---RSKTQKVSEVMTSP----VISVDRGDFLFEAMLMMLRNRIKHLPVTED----------------------GQPLGIL 260 (610)
T ss_pred ---CCcccchhhhhccC----ceeecCcchHHHHHHHHHHhCCceeeeecC----------------------CeeeEEe
Confidence 12357899999755 999999999999999999 89999998753 5778999
Q ss_pred cHHHHHHHHHhc
Q 016003 166 TQEDIIRFILSS 177 (397)
Q Consensus 166 Tq~DIi~~l~~~ 177 (397)
|.+||++.+..|
T Consensus 261 t~~dIl~l~s~~ 272 (610)
T COG2905 261 TLTDILRLFSQN 272 (610)
T ss_pred eHHHHHHhhCCC
Confidence 999999988644
|
|
| >cd04614 CBS_pair_1 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=99.11 E-value=6.6e-10 Score=89.74 Aligned_cols=93 Identities=13% Similarity=0.159 Sum_probs=80.4
Q ss_pred CeEEEeCChhHHHHHHHHhhCCCceEEEEccCCCCCCCCCCCCCCCeEEEEEehhHHHHHHhhcCCCCChhhhhcCChhh
Q 016003 19 ALRALSISAAIADALSALKNSDESFISVWDCNCCSNHRKLGDACECQCVGKVCMVDVICYLCKDSNSLSPSLALKQPVSV 98 (397)
Q Consensus 19 ~li~v~~~~tv~~Al~~L~~~~I~s~PV~d~~~~~~~~~~~~~~~~~~vGiv~~~Dil~~l~~~~~l~~~~~~~~~~V~~ 98 (397)
+++++++++++.+|++.|.++++..+||+|. +++++|+++..|+....
T Consensus 2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~-------------~~~~~Giv~~~dl~~~~------------------- 49 (96)
T cd04614 2 NVPTVWEETPLPVAVRIMELANVKALPVLDD-------------DGKLSGIITERDLIAKS------------------- 49 (96)
T ss_pred CccEeCCCCcHHHHHHHHHHcCCCeEEEECC-------------CCCEEEEEEHHHHhcCC-------------------
Confidence 5788999999999999999999999999996 36899999999998531
Q ss_pred hccCCCCCceEEeCCCCCHHHHHHHHh-cCCceEEEeccCcchhhhhhhcccccccccCCCCceeeeecHHHHHH
Q 016003 99 LLPQLLPPLVMHVEPSCSLLEAMDLML-GGAQNLVVPIKNRLSIKRKQQQKLSSSSLTNHNGREFCWLTQEDIIR 172 (397)
Q Consensus 99 lm~~~~~~~~~~V~~~~sL~~al~~m~-~g~~r~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IITq~DIi~ 172 (397)
. ++++.+++++.++++.|. ++.++++|..++ +.+.|+||++|+++
T Consensus 50 ----~----~~~v~~~~~l~~a~~~m~~~~~~~lpVv~~~---------------------~~~~Giit~~di~~ 95 (96)
T cd04614 50 ----E----VVTATKRTTVSECAQKMKRNRIEQIPIINGN---------------------DKLIGLLRDHDLLK 95 (96)
T ss_pred ----C----cEEecCCCCHHHHHHHHHHhCCCeeeEECCC---------------------CcEEEEEEHHHhhc
Confidence 0 688999999999999998 789999887532 45789999999975
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera |
| >PRK01862 putative voltage-gated ClC-type chloride channel ClcB; Provisional | Back alignment and domain information |
|---|
Probab=99.11 E-value=7.7e-10 Score=117.55 Aligned_cols=129 Identities=14% Similarity=0.158 Sum_probs=106.0
Q ss_pred ccccchhhhhhcCCCCeEEEeCChhHHHHHHHHhhCCCceEEEEccCCCCCCCCCCCCCCCeEEEEEehhHHHHHHhhcC
Q 016003 4 SLLADEVSDLCLGKPALRALSISAAIADALSALKNSDESFISVWDCNCCSNHRKLGDACECQCVGKVCMVDVICYLCKDS 83 (397)
Q Consensus 4 ~~~~~~v~dl~~~k~~li~v~~~~tv~~Al~~L~~~~I~s~PV~d~~~~~~~~~~~~~~~~~~vGiv~~~Dil~~l~~~~ 83 (397)
.+..++|+|+| +++.+++++++++.+|++.|.+++...+||+|+ +++++|+++..|+.+.+..++
T Consensus 443 ~L~~~~V~dim--~~~~~~v~~~~tl~ea~~~l~~~~~~~~~VvD~-------------~g~lvGiVt~~dL~~~l~~~~ 507 (574)
T PRK01862 443 RLRTTQMRELI--QPAQTVVPPTASVADMTRVFLEYPVKYLYVVDD-------------DGRFRGAVALKDITSDLLDKR 507 (574)
T ss_pred HHhhCcHHHHh--cCCCceeCCCCCHHHHHHHHHhCCCceEEEEcC-------------CCeEEEEEEHHHHHHHhhccc
Confidence 46678899999 456788999999999999999999999999996 368999999999998664321
Q ss_pred CCCChhhhhcCChhhhccCCCCCceEEeCCCCCHHHHHHHHh-cCCceEEEeccCcchhhhhhhcccccccccCCCCcee
Q 016003 84 NSLSPSLALKQPVSVLLPQLLPPLVMHVEPSCSLLEAMDLML-GGAQNLVVPIKNRLSIKRKQQQKLSSSSLTNHNGREF 162 (397)
Q Consensus 84 ~l~~~~~~~~~~V~~lm~~~~~~~~~~V~~~~sL~~al~~m~-~g~~r~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (397)
. ..+.++.++|... ++++++++++.++++.|. ++.++++|+++++ +++..
T Consensus 508 ~------~~~~~v~dim~~~----~~~v~~d~~L~~al~~m~~~~~~~lpVVd~~~-------------------~~~li 558 (574)
T PRK01862 508 D------TTDKTAADYAHTP----FPLLTPDMPLGDALEHFMAFQGERLPVVESEA-------------------SPTLA 558 (574)
T ss_pred c------cccchHHHhccCC----CeeECCCCCHHHHHHHHHhcCCCeeeeEeCCC-------------------CCeEE
Confidence 1 1235788999654 789999999999999999 7899999986431 13678
Q ss_pred eeecHHHHHHHHHh
Q 016003 163 CWLTQEDIIRFILS 176 (397)
Q Consensus 163 ~IITq~DIi~~l~~ 176 (397)
|+||+.|+++.+.+
T Consensus 559 GvIt~~DIl~~l~~ 572 (574)
T PRK01862 559 GVVYKTSLLDAYRR 572 (574)
T ss_pred EEEEHHHHHHHHHh
Confidence 99999999998864
|
|
| >cd04638 CBS_pair_25 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=99.10 E-value=1.2e-09 Score=88.90 Aligned_cols=104 Identities=23% Similarity=0.344 Sum_probs=83.4
Q ss_pred CeEEEeCCCcHHHHHHHHHhcCCCCCEEEEEcCCCcEEEeeccCcccCcchhHHHHHhhcChhhhhhhhccCCCCchhHH
Q 016003 198 DVVAVDYHSPASLALEAISRSLFDQTSVAVVDSDGFLIGEISPSTLGCCDETVAAAITTLSAGDLMAYIDCGGPPEDLVR 277 (397)
Q Consensus 198 ~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~is~~dl~~~~~~~~~~~~~ls~~Dl~~~~~~~~~~~~l~~ 277 (397)
++.++.++.++.++++.|.+.+. +.+||+|++|+++|+++ ..|++....
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~g~v~-------------------~~~l~~~~~---------- 50 (106)
T cd04638 2 NVVYVTLPGTRDDVLELLKEYKV--SGVPVVKKSGELVGIIT-------------------RKDLLRNPE---------- 50 (106)
T ss_pred CcEEECCCCCHHHHHHHHHHcCC--CeEEEEcCCCcEEEEEE-------------------HHHHHhccc----------
Confidence 57889999999999999998888 99999998899999944 444432000
Q ss_pred HHHHHhhhcchhhhhhhhccccCCCCCCCCCCCCCccchhhhccccCCCccccccchhhhhcCCccEEeCCCCcHHHHHH
Q 016003 278 VVKERLKDKGLEGMLEHFDMSSSLMPYLSTSSSSDEESTATSKLTRSGKHSRSMSYSARMVRRAEAIVCHPTSSLMAVMI 357 (397)
Q Consensus 278 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~~~~sl~~v~~ 357 (397)
+ .. ....|..++.++.+++++.+++.
T Consensus 51 ---------------------------------------~-------~~--------~~~~~~~~~~~v~~~~~l~~~~~ 76 (106)
T cd04638 51 ---------------------------------------E-------EQ--------LALLMTRDPPTVSPDDDVKEAAK 76 (106)
T ss_pred ---------------------------------------c-------ch--------HHHHhcCCCceECCCCCHHHHHH
Confidence 0 00 00124557889999999999999
Q ss_pred HHHHcCCcEEEEEcCCCcEEEEEehHHHHH
Q 016003 358 QAIAHRVTYVWVIEDDCTLTGIVTFSDLLK 387 (397)
Q Consensus 358 ~m~~~~i~rl~VVd~~~~lvGvVt~~DIl~ 387 (397)
.|.+++.+++||+|+ |+++|+||..|+++
T Consensus 77 ~~~~~~~~~~~Vvd~-~~~~G~it~~d~~~ 105 (106)
T cd04638 77 LMVENNIRRVPVVDD-GKLVGIVTVADIVR 105 (106)
T ss_pred HHHHcCCCEEEEEEC-CEEEEEEEHHHhhc
Confidence 999999999999996 79999999999985
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener |
| >cd04629 CBS_pair_16 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=99.10 E-value=8.1e-10 Score=90.76 Aligned_cols=113 Identities=20% Similarity=0.196 Sum_probs=91.2
Q ss_pred CCeEEEeCChhHHHHHHHHhhCCCceEEEEccCCCCCCCCCCCCCCCeEEEEEehhHHHHHHhhcCCCCChhhhhcCChh
Q 016003 18 PALRALSISAAIADALSALKNSDESFISVWDCNCCSNHRKLGDACECQCVGKVCMVDVICYLCKDSNSLSPSLALKQPVS 97 (397)
Q Consensus 18 ~~li~v~~~~tv~~Al~~L~~~~I~s~PV~d~~~~~~~~~~~~~~~~~~vGiv~~~Dil~~l~~~~~l~~~~~~~~~~V~ 97 (397)
++++++++++++.+|++.|.++++..+||++. .++++|+++..|+++.+.+... ......++.
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~-------------~~~~~G~v~~~~l~~~~~~~~~----~~~~~~~v~ 63 (114)
T cd04629 1 RNPVTFTPDMSVTEAVEKLLKSKISGGPVVDD-------------NGNLVGFLSEQDCLKQLLESSY----HCDGVATVR 63 (114)
T ss_pred CCCeEeCCCCCHHHHHHHHHhcCCCCccEECC-------------CCeEEEEeehHHHHHHhhhhhh----ccCCCccHH
Confidence 35788999999999999999999999999996 3689999999999987764211 012345788
Q ss_pred hhccCCCCCceEEeCCCCCHHHHHHHHh-cCCceEEEeccCcchhhhhhhcccccccccCCCCceeeeecHHHHHHH
Q 016003 98 VLLPQLLPPLVMHVEPSCSLLEAMDLML-GGAQNLVVPIKNRLSIKRKQQQKLSSSSLTNHNGREFCWLTQEDIIRF 173 (397)
Q Consensus 98 ~lm~~~~~~~~~~V~~~~sL~~al~~m~-~g~~r~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IITq~DIi~~ 173 (397)
++|... ++.+.+++++.++++.|. ++.++++|.++ +..+|+||+.||+++
T Consensus 64 ~~~~~~----~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~----------------------~~~~Gvit~~di~~~ 114 (114)
T cd04629 64 DIMTTE----VLTVSPDDSIVDLAQLMLKAKPKRYPVVDD----------------------GKLVGQISRRDVLRA 114 (114)
T ss_pred HHhccC----ceEECCCCcHHHHHHHHHHhCCCccCEEEC----------------------CEEEEEEEHHHHhcC
Confidence 998643 788999999999999999 67888877642 356899999999863
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener |
| >cd04589 CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the bacterial CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain | Back alignment and domain information |
|---|
Probab=99.09 E-value=2.3e-09 Score=87.88 Aligned_cols=109 Identities=23% Similarity=0.254 Sum_probs=90.0
Q ss_pred CeEEEeCChhHHHHHHHHhhCCCceEEEEccCCCCCCCCCCCCCCCeEEEEEehhHHHHHHhhcCCCCChhhhhcCChhh
Q 016003 19 ALRALSISAAIADALSALKNSDESFISVWDCNCCSNHRKLGDACECQCVGKVCMVDVICYLCKDSNSLSPSLALKQPVSV 98 (397)
Q Consensus 19 ~li~v~~~~tv~~Al~~L~~~~I~s~PV~d~~~~~~~~~~~~~~~~~~vGiv~~~Dil~~l~~~~~l~~~~~~~~~~V~~ 98 (397)
+.++++++.++.+|++.|.+++...+||.|. ++++|+++..|++..+.+... ....++.+
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~--------------~~~~G~v~~~~l~~~~~~~~~------~~~~~i~~ 61 (111)
T cd04589 2 PPLIVDASTSIRDAARLMREHGADALLVRDG--------------DPRLGIVTRTDLLDAVLLDGL------PSSTPVGE 61 (111)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCEEEEecC--------------CeEEEEEEHHHHHHHHHcCCC------CCCCCHHH
Confidence 4678899999999999999999999999995 479999999999987654211 12467888
Q ss_pred hccCCCCCceEEeCCCCCHHHHHHHHh-cCCceEEEeccCcchhhhhhhcccccccccCCCCceeeeecHHHHHHH
Q 016003 99 LLPQLLPPLVMHVEPSCSLLEAMDLML-GGAQNLVVPIKNRLSIKRKQQQKLSSSSLTNHNGREFCWLTQEDIIRF 173 (397)
Q Consensus 99 lm~~~~~~~~~~V~~~~sL~~al~~m~-~g~~r~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IITq~DIi~~ 173 (397)
+|... ++.+.+++++.++++.|. ++.++++|.++ +..+|+||+.|+++|
T Consensus 62 ~~~~~----~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~----------------------~~~~G~it~~dl~~~ 111 (111)
T cd04589 62 IATFP----LITVDPDDFLFNALLLMTRHRIHRVVVREG----------------------GEVVGVLEQTDLLSF 111 (111)
T ss_pred HhCCC----cEEECCCCcHHHHHHHHHHhCccEEEEeeC----------------------CEEEEEEEhHHhhcC
Confidence 88644 889999999999999999 68888888642 356889999999875
|
Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or |
| >cd04639 CBS_pair_26 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=99.09 E-value=1.3e-09 Score=89.17 Aligned_cols=109 Identities=27% Similarity=0.301 Sum_probs=90.2
Q ss_pred CeEEEeCChhHHHHHHHHhhCCCceEEEEccCCCCCCCCCCCCCCCeEEEEEehhHHHHHHhhcCCCCChhhhhcCChhh
Q 016003 19 ALRALSISAAIADALSALKNSDESFISVWDCNCCSNHRKLGDACECQCVGKVCMVDVICYLCKDSNSLSPSLALKQPVSV 98 (397)
Q Consensus 19 ~li~v~~~~tv~~Al~~L~~~~I~s~PV~d~~~~~~~~~~~~~~~~~~vGiv~~~Dil~~l~~~~~l~~~~~~~~~~V~~ 98 (397)
+.+.+.+++|+.+|++.|.+++...+||++.+ ++++|+++..|+.+++.++. .+.++.+
T Consensus 2 ~~~~v~~~~~i~e~~~~~~~~~~~~~~V~~~~-------------~~~~G~v~~~~l~~~~~~~~--------~~~~v~~ 60 (111)
T cd04639 2 HFETLSPADTLDDAADALLATTQHEFPVVDGD-------------GHLVGLLTRDDLIRALAEGG--------PDAPVRG 60 (111)
T ss_pred CceEcCCCCcHHHHHHHHHHcCCCcceEECCC-------------CcEEEEeeHHHHHHHHHhcC--------CCCcHHH
Confidence 45778999999999999999999999999963 68999999999998876421 1357889
Q ss_pred hccCCCCCceEEeCCCCCHHHHHHHHh-cCCceEEEeccCcchhhhhhhcccccccccCCCCceeeeecHHHHHHH
Q 016003 99 LLPQLLPPLVMHVEPSCSLLEAMDLML-GGAQNLVVPIKNRLSIKRKQQQKLSSSSLTNHNGREFCWLTQEDIIRF 173 (397)
Q Consensus 99 lm~~~~~~~~~~V~~~~sL~~al~~m~-~g~~r~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IITq~DIi~~ 173 (397)
+|... +..+.+++++.++++.|. ++.++++|..+. ++.+|+||..|+.++
T Consensus 61 ~~~~~----~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~~---------------------~~~~G~it~~dl~~~ 111 (111)
T cd04639 61 VMRRD----FPTVSPSATLDAVLRLMQQGGAPAVPVVDGS---------------------GRLVGLVTLENVGEL 111 (111)
T ss_pred HhcCC----CcEECCCCcHHHHHHHHHhcCCceeeEEcCC---------------------CCEEEEEEHHHhhcC
Confidence 98644 889999999999999999 678888887531 357899999999764
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener |
| >COG0517 FOG: CBS domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.07 E-value=1.8e-09 Score=88.93 Aligned_cols=106 Identities=30% Similarity=0.431 Sum_probs=87.3
Q ss_pred ceEEeCCCCCHHHHHHHHh-cCCceEEEeccCcchhhhhhhcccccccccCCCCceeeeecHHHHHHHHHhccCCCCCCc
Q 016003 107 LVMHVEPSCSLLEAMDLML-GGAQNLVVPIKNRLSIKRKQQQKLSSSSLTNHNGREFCWLTQEDIIRFILSSISLFSPIP 185 (397)
Q Consensus 107 ~~~~V~~~~sL~~al~~m~-~g~~r~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IITq~DIi~~l~~~~~~l~~l~ 185 (397)
.++++.++.++.+|...|. +++.+++|... .+.+|++|..|+++.+.......
T Consensus 8 ~~~~v~~~~~~~~a~~~m~~~~~~~~~v~~~----------------------~~l~Giit~~di~~~~~~~~~~~---- 61 (117)
T COG0517 8 DVITVKPDTSVRDALLLMSENGVSAVPVVDD----------------------GKLVGIITERDILRALAAGGKRL---- 61 (117)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCEEEEeeC----------------------CEEEEEEEHHHHHHHHhccCCcc----
Confidence 3899999999999999999 78888877642 14688999999999987532211
Q ss_pred cCCccccCCCCcCeEEEeCCCcHHHHHHHHHh-cCCCCCEEEEEcCCC-cEEEeeccCcc
Q 016003 186 ALSIDSLGIISTDVVAVDYHSPASLALEAISR-SLFDQTSVAVVDSDG-FLIGEISPSTL 243 (397)
Q Consensus 186 ~~ti~~L~~~~~~v~tv~~~~~~~~a~~~m~~-~~i~~s~vpVVd~~g-~lvG~is~~dl 243 (397)
.++.+ +|+++++++.+++++.+|++.|.. +++ +++||+++++ +++|++|.+|+
T Consensus 62 -~~v~~--v~~~~~~~~~~~~~~~~~~~~m~~~~~~--~~lpVv~~~~~~lvGivt~~di 116 (117)
T COG0517 62 -LPVKE--VMTKPVVTVDPDTPLEEALELMVERHKI--RRLPVVDDDGGKLVGIITLSDI 116 (117)
T ss_pred -ccHHH--hccCCcEEECCCCCHHHHHHHHHHHcCc--CeEEEEECCCCeEEEEEEHHHc
Confidence 13444 688899999999999999999999 799 9999999996 99999776554
|
|
| >cd04613 CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC | Back alignment and domain information |
|---|
Probab=99.07 E-value=1.8e-09 Score=88.43 Aligned_cols=111 Identities=20% Similarity=0.220 Sum_probs=90.9
Q ss_pred CCeEEEeCChhHHHHHHHHhhCCCceEEEEccCCCCCCCCCCCCCCCeEEEEEehhHHHHHHhhcCCCCChhhhh-cCCh
Q 016003 18 PALRALSISAAIADALSALKNSDESFISVWDCNCCSNHRKLGDACECQCVGKVCMVDVICYLCKDSNSLSPSLAL-KQPV 96 (397)
Q Consensus 18 ~~li~v~~~~tv~~Al~~L~~~~I~s~PV~d~~~~~~~~~~~~~~~~~~vGiv~~~Dil~~l~~~~~l~~~~~~~-~~~V 96 (397)
+++.++++++++.+|++.|.++++..+||+|. +++++|+++..|+.+++.+.. .. ..++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-------------~~~~~G~v~~~~l~~~~~~~~-------~~~~~~v 60 (114)
T cd04613 1 RDVVTIPEDTPLNELLDVIAHSPENNFPVVDD-------------DGRLVGIVSLDDIREILFDPS-------LYDLVVA 60 (114)
T ss_pred CCceeeCCCCcHHHHHHHHHhCCCcceeEECC-------------CCCEEEEEEHHHHHHHHhccc-------ccccEEH
Confidence 45788999999999999999999999999996 368999999999998765421 11 2578
Q ss_pred hhhccCCCCCceEEeCCCCCHHHHHHHHh-cCCceEEEeccCcchhhhhhhcccccccccCCCCceeeeecHHHHHH
Q 016003 97 SVLLPQLLPPLVMHVEPSCSLLEAMDLML-GGAQNLVVPIKNRLSIKRKQQQKLSSSSLTNHNGREFCWLTQEDIIR 172 (397)
Q Consensus 97 ~~lm~~~~~~~~~~V~~~~sL~~al~~m~-~g~~r~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IITq~DIi~ 172 (397)
.++|... ++++.+++++.++++.|. .+.++++|.... .+..+|+||+.|+++
T Consensus 61 ~~~~~~~----~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~--------------------~~~~~Gvvt~~di~~ 113 (114)
T cd04613 61 SDIMTKP----PVVVYPEDSLEDALKKFEDSDYEQLPVVDDD--------------------PGKLLGILSRSDLLS 113 (114)
T ss_pred HHhccCC----CcEEcCCCCHHHHHHHHhhCCccEeeEEeCC--------------------CCEEEEEEEhHHhhc
Confidence 8999654 889999999999999998 688888887531 135789999999875
|
SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase a |
| >TIGR01137 cysta_beta cystathionine beta-synthase | Back alignment and domain information |
|---|
Probab=99.07 E-value=1e-09 Score=113.26 Aligned_cols=120 Identities=17% Similarity=0.190 Sum_probs=91.1
Q ss_pred cCCccccCCCCcCeEEEeCCCcHHHHHHHHHhcCCCCCEEEEEcCCCcEEEeeccCcccCcchhHHHHHhhcChhhhhhh
Q 016003 186 ALSIDSLGIISTDVVAVDYHSPASLALEAISRSLFDQTSVAVVDSDGFLIGEISPSTLGCCDETVAAAITTLSAGDLMAY 265 (397)
Q Consensus 186 ~~ti~~L~~~~~~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~is~~dl~~~~~~~~~~~~~ls~~Dl~~~ 265 (397)
..++.+ +|.+++.++.+++++.+|++.|.++++ +.+||+|++|+++|+| +..|++..
T Consensus 334 ~~~v~~--im~~~~~~v~~~~tl~ea~~~m~~~~~--~~~~Vvd~~~~~~Giv-------------------t~~dl~~~ 390 (454)
T TIGR01137 334 NATVKD--LHLPAPVTVHPTETVGDAIEILREYGF--DQLPVVTEAGKVLGSV-------------------TLRELLSA 390 (454)
T ss_pred cCCHHH--hCcCCCeEECCCCcHHHHHHHHHHcCC--CEEEEEcCCCeEEEEE-------------------EHHHHHHH
Confidence 344544 788999999999999999999999988 9999999989999994 56666542
Q ss_pred hccCCCCchhHHHHHHHhhhcchhhhhhhhccccCCCCCCCCCCCCCccchhhhccccCCCccccccchhhhhcCCccEE
Q 016003 266 IDCGGPPEDLVRVVKERLKDKGLEGMLEHFDMSSSLMPYLSTSSSSDEESTATSKLTRSGKHSRSMSYSARMVRRAEAIV 345 (397)
Q Consensus 266 ~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it 345 (397)
+... . .. .. .....+|..++.+
T Consensus 391 ~~~~--------------------------~----~~--------------------~~--------~~v~~im~~~~~~ 412 (454)
T TIGR01137 391 LFAG--------------------------K----AN--------------------PD--------DAVSKVMSKKFIQ 412 (454)
T ss_pred Hhcc--------------------------C----CC--------------------cC--------CCHHHhcCCCCeE
Confidence 2100 0 00 00 0011346678889
Q ss_pred eCCCCcHHHHHHHHHHcCCcEEEEEcCCCcEEEEEehHHHHHHH
Q 016003 346 CHPTSSLMAVMIQAIAHRVTYVWVIEDDCTLTGIVTFSDLLKVF 389 (397)
Q Consensus 346 ~~~~~sl~~v~~~m~~~~i~rl~VVd~~~~lvGvVt~~DIl~~l 389 (397)
+++++++.+++.+|.+++ .+||+++++++|+||+.||+++|
T Consensus 413 v~~~~~l~~a~~~~~~~~---~~vV~~~g~liGvvt~~dll~~l 453 (454)
T TIGR01137 413 IGEGEKLSDLSKFLEKNS---SAIVTEEGKPIGVVTKIDLLSFL 453 (454)
T ss_pred ECCcCcHHHHHHHHHHCC---eeEEEECCEEEEEEEHHHHHHhh
Confidence 999999999999998764 46666678999999999999986
|
Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven. |
| >cd04621 CBS_pair_8 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=99.07 E-value=2.3e-09 Score=92.19 Aligned_cols=115 Identities=16% Similarity=0.183 Sum_probs=90.7
Q ss_pred CeEEEeCChhHHHHHHHHhhCCCceEEEEccCCCCCCCCCCCCCCCeEEEEEehhHHHHHHhhcCCCC------------
Q 016003 19 ALRALSISAAIADALSALKNSDESFISVWDCNCCSNHRKLGDACECQCVGKVCMVDVICYLCKDSNSL------------ 86 (397)
Q Consensus 19 ~li~v~~~~tv~~Al~~L~~~~I~s~PV~d~~~~~~~~~~~~~~~~~~vGiv~~~Dil~~l~~~~~l~------------ 86 (397)
++.++++++++.+|++.|.++++..+||+|. .++++|+++..|+++++.......
T Consensus 2 ~~~~v~~~~~~~~a~~~~~~~~~~~l~V~d~-------------~~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~ 68 (135)
T cd04621 2 DIATVHPEHSLLHVVDEMEKNGVGRVIVVDD-------------NGKPVGVITYRDLAFAEFEDNERGLPKKSIKMKRKA 68 (135)
T ss_pred CceEeCCCCcHHHHHHHHHHcCCCcceEECC-------------CCCEEEEEeHHHHHHHhhcccccccchhhhhhhhhc
Confidence 3578899999999999999999999999996 368999999999999875321100
Q ss_pred -C----hhhhhcCChhhhccCCCCCceEEeCCCCCHHHHHHHHh-cCCceEEEeccCcchhhhhhhcccccccccCCCCc
Q 016003 87 -S----PSLALKQPVSVLLPQLLPPLVMHVEPSCSLLEAMDLML-GGAQNLVVPIKNRLSIKRKQQQKLSSSSLTNHNGR 160 (397)
Q Consensus 87 -~----~~~~~~~~V~~lm~~~~~~~~~~V~~~~sL~~al~~m~-~g~~r~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (397)
. .......+++++|... ++.+.+++++.++++.|. ++.++++|..+ +.
T Consensus 69 ~~~~~~~~~~~~~~v~~~~~~~----~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~----------------------~~ 122 (135)
T cd04621 69 GQKRYRYVKEVPLVAEDIMTEE----IITVSPNDDVVDAAKLMLEANISGLPVVDN----------------------DN 122 (135)
T ss_pred ccccccccccccccHHHhcCCC----CeEECCCCCHHHHHHHHHHcCCCEEEEEeC----------------------CE
Confidence 0 0011245799999644 789999999999999998 77888888753 35
Q ss_pred eeeeecHHHHHH
Q 016003 161 EFCWLTQEDIIR 172 (397)
Q Consensus 161 ~~~IITq~DIi~ 172 (397)
++|+||+.|+++
T Consensus 123 ~~Gvit~~di~~ 134 (135)
T cd04621 123 IVGVITKTDICR 134 (135)
T ss_pred EEEEEEHHHHhh
Confidence 789999999976
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera |
| >cd04590 CBS_pair_CorC_HlyC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the CorC_HlyC domain | Back alignment and domain information |
|---|
Probab=99.06 E-value=3.7e-09 Score=86.46 Aligned_cols=108 Identities=21% Similarity=0.246 Sum_probs=88.4
Q ss_pred CeEEEeCChhHHHHHHHHhhCCCceEEEEccCCCCCCCCCCCCCCCeEEEEEehhHHHHHHhhcCCCCChhhhhcCChhh
Q 016003 19 ALRALSISAAIADALSALKNSDESFISVWDCNCCSNHRKLGDACECQCVGKVCMVDVICYLCKDSNSLSPSLALKQPVSV 98 (397)
Q Consensus 19 ~li~v~~~~tv~~Al~~L~~~~I~s~PV~d~~~~~~~~~~~~~~~~~~vGiv~~~Dil~~l~~~~~l~~~~~~~~~~V~~ 98 (397)
+++++++++++.+|++.|.++++..+||.+.+ .++++|+++..|++.++.++.. ..++.+
T Consensus 2 ~~~~i~~~~~i~~a~~~~~~~~~~~~~v~~~~------------~~~~~G~v~~~~l~~~~~~~~~--------~~~~~~ 61 (111)
T cd04590 2 DIVALDADDTLEEILELIAESGHSRFPVYDGD------------LDNIIGVVHVKDLLRALAEGEE--------DLDLRD 61 (111)
T ss_pred ceEEEcCCCCHHHHHHHHhhCCCceEEEECCC------------CceEEEEEEHHHHHHHHHcCCC--------cCCHHH
Confidence 57899999999999999999999999999963 1689999999999998754211 146677
Q ss_pred hccCCCCCceEEeCCCCCHHHHHHHHh-cCCceEEEeccCcchhhhhhhcccccccccCCCCceeeeecHHHHHH
Q 016003 99 LLPQLLPPLVMHVEPSCSLLEAMDLML-GGAQNLVVPIKNRLSIKRKQQQKLSSSSLTNHNGREFCWLTQEDIIR 172 (397)
Q Consensus 99 lm~~~~~~~~~~V~~~~sL~~al~~m~-~g~~r~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IITq~DIi~ 172 (397)
++. ++..+.+++++.++++.|. ++.+.++|.+++ +..+|+||+.|+++
T Consensus 62 ~~~-----~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~---------------------~~~~Gvit~~di~~ 110 (111)
T cd04590 62 LLR-----PPLFVPESTPLDDLLEEMRKERSHMAIVVDEY---------------------GGTAGLVTLEDILE 110 (111)
T ss_pred Hhc-----CCeecCCCCcHHHHHHHHHhcCCcEEEEEECC---------------------CCEEEEeEHHHhhc
Confidence 663 2688999999999999999 788888887532 35789999999874
|
CorC_HlyC is a transporter associated domain. This small domain is found in Na+/H+ antiporters, in proteins involved in magnesium and cobalt efflux, and in association with some proteins of unknown function. The function of the CorC_HlyC domain is uncertain but it might be involved in modulating transport of ion substrates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, |
| >TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=99.06 E-value=3.5e-09 Score=109.53 Aligned_cols=120 Identities=16% Similarity=0.103 Sum_probs=98.8
Q ss_pred cccchhhhhhcCCCCeEEEeCChhHHHHHHHHhhCCCceEEEEccCCCCCCCCCCCCCCCeEEEEEehhHHHHHHhhcCC
Q 016003 5 LLADEVSDLCLGKPALRALSISAAIADALSALKNSDESFISVWDCNCCSNHRKLGDACECQCVGKVCMVDVICYLCKDSN 84 (397)
Q Consensus 5 ~~~~~v~dl~~~k~~li~v~~~~tv~~Al~~L~~~~I~s~PV~d~~~~~~~~~~~~~~~~~~vGiv~~~Dil~~l~~~~~ 84 (397)
+...+++++|. ++.+++++++|+.+|++.|.++++..+||+|. ++++|+|+.+|+...
T Consensus 85 v~~VKv~eim~--~~pvtv~p~~tI~eA~~lm~~~~~~~~vVvD~--------------gklvGIVT~rDL~~~------ 142 (475)
T TIGR01303 85 VAFVKSRDLVL--DTPITLAPHDTVSDAMALIHKRAHGAAVVILE--------------DRPVGLVTDSDLLGV------ 142 (475)
T ss_pred Hhhcchhhccc--cCCeEECCCCCHHHHHHHHHhcCCeEEEEEEC--------------CEEEEEEEHHHhhcC------
Confidence 44566778874 56789999999999999999999999999984 489999999998311
Q ss_pred CCChhhhhcCChhhhccCCCCCceEEeCCCCCHHHHHHHHh-cCCceEEEeccCcchhhhhhhcccccccccCCCCceee
Q 016003 85 SLSPSLALKQPVSVLLPQLLPPLVMHVEPSCSLLEAMDLML-GGAQNLVVPIKNRLSIKRKQQQKLSSSSLTNHNGREFC 163 (397)
Q Consensus 85 l~~~~~~~~~~V~~lm~~~~~~~~~~V~~~~sL~~al~~m~-~g~~r~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (397)
....+++++|... ++++.+++++.+|+++|. +++++++|++++ +.++|
T Consensus 143 ------~~~~~V~dIMt~~----litv~~~~sL~eAl~lM~~~~i~~LPVVD~~---------------------g~LvG 191 (475)
T TIGR01303 143 ------DRFTQVRDIMSTD----LVTAPADTEPRKAFDLLEHAPRDVAPLVDAD---------------------GTLAG 191 (475)
T ss_pred ------CCCCCHHHHccCC----ceEeCCCCcHHHHHHHHHHcCCCEEEEEcCC---------------------CeEEE
Confidence 0135799999754 899999999999999999 789999887532 35789
Q ss_pred eecHHHHHHHHHhc
Q 016003 164 WLTQEDIIRFILSS 177 (397)
Q Consensus 164 IITq~DIi~~l~~~ 177 (397)
+||+.||++.....
T Consensus 192 IIT~~DLl~~~~~~ 205 (475)
T TIGR01303 192 ILTRTGALRATIYT 205 (475)
T ss_pred EEEHHHHHHHHhCC
Confidence 99999999987643
|
This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302. |
| >cd04588 CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the archaeal CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain | Back alignment and domain information |
|---|
Probab=99.06 E-value=4.3e-09 Score=85.97 Aligned_cols=108 Identities=22% Similarity=0.282 Sum_probs=89.2
Q ss_pred CCeEEEeCChhHHHHHHHHhhCCCceEEEEccCCCCCCCCCCCCCCCeEEEEEehhHHHHHHhhcCCCCChhhhhcCChh
Q 016003 18 PALRALSISAAIADALSALKNSDESFISVWDCNCCSNHRKLGDACECQCVGKVCMVDVICYLCKDSNSLSPSLALKQPVS 97 (397)
Q Consensus 18 ~~li~v~~~~tv~~Al~~L~~~~I~s~PV~d~~~~~~~~~~~~~~~~~~vGiv~~~Dil~~l~~~~~l~~~~~~~~~~V~ 97 (397)
++++.+++++++.+|++.|.++++..+||.+. ++++|+++..|++++..+... ..++.
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--------------~~~~G~v~~~~l~~~~~~~~~--------~~~v~ 58 (110)
T cd04588 1 KPLITLNPNATLREAARLFNTHHIHGAPVVDD--------------GKLVGIVTLSDIAHAIARGLE--------LAKVK 58 (110)
T ss_pred CCcEEECCCCCHHHHHHHHHHcCCCEEEEeeC--------------CEEEEEEEHHHHHHHHhcccc--------ccCHH
Confidence 46788999999999999999999999999995 489999999999987654211 15688
Q ss_pred hhccCCCCCceEEeCCCCCHHHHHHHHh-cCCceEEEeccCcchhhhhhhcccccccccCCCCceeeeecHHHHHH
Q 016003 98 VLLPQLLPPLVMHVEPSCSLLEAMDLML-GGAQNLVVPIKNRLSIKRKQQQKLSSSSLTNHNGREFCWLTQEDIIR 172 (397)
Q Consensus 98 ~lm~~~~~~~~~~V~~~~sL~~al~~m~-~g~~r~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IITq~DIi~ 172 (397)
++|.. ++.++.+++++.++++.|. .+.+.++|..+. ++..|+||..|+++
T Consensus 59 ~~~~~----~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~---------------------~~~~G~i~~~dl~~ 109 (110)
T cd04588 59 DVMTK----DVITIDEDEQLYDAIRLMNKHNVGRLIVTDDE---------------------GRPVGIITRTDILR 109 (110)
T ss_pred HHhcC----CceEECCCCCHHHHHHHHHhcCCCEEEEECCC---------------------CCEEEEEEhHHhhc
Confidence 88854 3899999999999999998 678888887531 35688999999875
|
Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. |
| >PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=99.06 E-value=3.3e-09 Score=110.53 Aligned_cols=168 Identities=23% Similarity=0.186 Sum_probs=120.9
Q ss_pred hhhhhhcCCCCeEEEeCChhHHHHHHHHhhCCCceEEEEccCCCCCCCCCCCCCCCeEEEEEehhHHHHHHhhcCCCCCh
Q 016003 9 EVSDLCLGKPALRALSISAAIADALSALKNSDESFISVWDCNCCSNHRKLGDACECQCVGKVCMVDVICYLCKDSNSLSP 88 (397)
Q Consensus 9 ~v~dl~~~k~~li~v~~~~tv~~Al~~L~~~~I~s~PV~d~~~~~~~~~~~~~~~~~~vGiv~~~Dil~~l~~~~~l~~~ 88 (397)
.++++|. ++++++++++|+.+|+++|.++++..+||+|. +++++|+|+..|+....
T Consensus 88 ~~~dim~--~~~v~i~~~~tv~ea~~~m~~~~~~~lpVvd~-------------~g~lvGiVt~~DL~~~~--------- 143 (486)
T PRK05567 88 RSESGVV--TDPVTVTPDTTLAEALALMARYGISGVPVVDE-------------NGKLVGIITNRDVRFET--------- 143 (486)
T ss_pred hhhhccc--CCCeEeCCCCCHHHHHHHHHHhCCCEEEEEcc-------------CCEEEEEEEHHHhhhcc---------
Confidence 3556663 67899999999999999999999999999995 37999999999996421
Q ss_pred hhhhcCChhhhccCCCCCceEEeCCCCCHHHHHHHHh-cCCceEEEeccCcchhhhhhhcccccccccCCCCceeeeecH
Q 016003 89 SLALKQPVSVLLPQLLPPLVMHVEPSCSLLEAMDLML-GGAQNLVVPIKNRLSIKRKQQQKLSSSSLTNHNGREFCWLTQ 167 (397)
Q Consensus 89 ~~~~~~~V~~lm~~~~~~~~~~V~~~~sL~~al~~m~-~g~~r~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IITq 167 (397)
....++.++|.. .+++++.+++++.++++.|. ++++.++|.+++ +...|+||.
T Consensus 144 --~~~~~V~dim~~---~~~v~v~~~~sl~eal~~m~~~~~~~lpVVDe~---------------------g~lvGiIT~ 197 (486)
T PRK05567 144 --DLSQPVSEVMTK---ERLVTVPEGTTLEEALELLHEHRIEKLPVVDDN---------------------GRLKGLITV 197 (486)
T ss_pred --cCCCcHHHHcCC---CCCEEECCCCCHHHHHHHHHHcCCCEEEEEcCC---------------------CcEEEEEEh
Confidence 123579999961 34899999999999999999 789998887632 467899999
Q ss_pred HHHHHHHHhccCCCCCCccCCccccCCCCcCeEEEeCCCcHHHHHHHHHhcCCCCCEEEEEcC-CCcEEEee
Q 016003 168 EDIIRFILSSISLFSPIPALSIDSLGIISTDVVAVDYHSPASLALEAISRSLFDQTSVAVVDS-DGFLIGEI 238 (397)
Q Consensus 168 ~DIi~~l~~~~~~l~~l~~~ti~~L~~~~~~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~-~g~lvG~i 238 (397)
.||++.+.. .... ...-..| .-...+.+.++ ..++++.|.++++ . +.++|. +|+..|.+
T Consensus 198 ~DLl~~~~~-p~a~----~d~~g~l--~V~aai~~~~~--~~e~a~~L~~agv--d-vivvD~a~g~~~~vl 257 (486)
T PRK05567 198 KDIEKAEEF-PNAC----KDEQGRL--RVGAAVGVGAD--NEERAEALVEAGV--D-VLVVDTAHGHSEGVL 257 (486)
T ss_pred HHhhhhhhC-CCcc----cccCCCE--EEEeecccCcc--hHHHHHHHHHhCC--C-EEEEECCCCcchhHH
Confidence 999988632 1100 0000011 11223333342 2788999999999 6 556664 46666653
|
|
| >cd04624 CBS_pair_11 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=99.06 E-value=3.3e-09 Score=86.89 Aligned_cols=109 Identities=20% Similarity=0.287 Sum_probs=90.0
Q ss_pred CeEEEeCChhHHHHHHHHhhCCCceEEEEccCCCCCCCCCCCCCCCeEEEEEehhHHHHHHhhcCCCCChhhhhcCChhh
Q 016003 19 ALRALSISAAIADALSALKNSDESFISVWDCNCCSNHRKLGDACECQCVGKVCMVDVICYLCKDSNSLSPSLALKQPVSV 98 (397)
Q Consensus 19 ~li~v~~~~tv~~Al~~L~~~~I~s~PV~d~~~~~~~~~~~~~~~~~~vGiv~~~Dil~~l~~~~~l~~~~~~~~~~V~~ 98 (397)
++.++++++++.+|++.|.++++..+||.|.+ ++++|+++..|++.++.... ..+.++.+
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~-------------~~~~G~v~~~~l~~~~~~~~-------~~~~~v~~ 61 (112)
T cd04624 2 PVVTVDPDTSIREAAKLMAEENVGSVVVVDPD-------------ERPIGIVTERDIVRAVAAGI-------DLDTPVSE 61 (112)
T ss_pred CCeEECCCCcHHHHHHHHHHcCCCEEEEECCC-------------CCEEEEeeHHHHHHHHhccC-------CCccCHHH
Confidence 56789999999999999999999999999963 68999999999998876532 12457888
Q ss_pred hccCCCCCceEEeCCCCCHHHHHHHHh-cCCceEEEeccCcchhhhhhhcccccccccCCCCceeeeecHHHHHH
Q 016003 99 LLPQLLPPLVMHVEPSCSLLEAMDLML-GGAQNLVVPIKNRLSIKRKQQQKLSSSSLTNHNGREFCWLTQEDIIR 172 (397)
Q Consensus 99 lm~~~~~~~~~~V~~~~sL~~al~~m~-~g~~r~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IITq~DIi~ 172 (397)
+|... ++.+.+++++.++++.|. ++...++|.+.+ +...|+||..|+++
T Consensus 62 ~~~~~----~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~---------------------g~~~Gilt~~dl~~ 111 (112)
T cd04624 62 IMTRD----LVTVDPDEPVAEAAKLMRKNNIRHHLVVDKG---------------------GELVGVISIRDLVR 111 (112)
T ss_pred hccCC----CEEECCCCcHHHHHHHHHHcCccEEEEEcCC---------------------CcEEEEEEHHHhcc
Confidence 88644 889999999999999998 678888776532 35678999999874
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener |
| >cd04615 CBS_pair_2 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=99.06 E-value=1.9e-09 Score=88.54 Aligned_cols=108 Identities=18% Similarity=0.248 Sum_probs=86.1
Q ss_pred eEEeCCCCCHHHHHHHHh-cCCceEEEeccCcchhhhhhhcccccccccCCCCceeeeecHHHHHHHHHhccCCCCCCcc
Q 016003 108 VMHVEPSCSLLEAMDLML-GGAQNLVVPIKNRLSIKRKQQQKLSSSSLTNHNGREFCWLTQEDIIRFILSSISLFSPIPA 186 (397)
Q Consensus 108 ~~~V~~~~sL~~al~~m~-~g~~r~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IITq~DIi~~l~~~~~~l~~l~~ 186 (397)
.+.+.++.++.++++.|. .+.++++|.+++ ++.+|++|+.|+.+.+.+. + .+..
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~vvd~~---------------------~~~~G~v~~~dl~~~~~~~-~---~~~~ 57 (113)
T cd04615 3 PSCVVLNTDIARAVAEMYTSGSRALPVVDDK---------------------KRLVGIITRYDVLSYALES-E---ELKD 57 (113)
T ss_pred CEEeeCCCcHHHHHHHHHHcCCceEeEEcCC---------------------CCEEEEEEHHHHHHhhhhh-h---hhcC
Confidence 577899999999999998 677787776532 3567899999999865432 1 1223
Q ss_pred CCccccCCCCcCeEEEeCCCcHHHHHHHHHhcCCCCCEEEEEcCCCcEEEeeccCccc
Q 016003 187 LSIDSLGIISTDVVAVDYHSPASLALEAISRSLFDQTSVAVVDSDGFLIGEISPSTLG 244 (397)
Q Consensus 187 ~ti~~L~~~~~~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~is~~dl~ 244 (397)
.++.+ +|..++.++.+++++.++++.|.+.+. ..+||+|++|+++|+||..||.
T Consensus 58 ~~i~~--~~~~~~~~v~~~~~l~~~~~~~~~~~~--~~~~Vvd~~g~~~Gvvt~~dl~ 111 (113)
T cd04615 58 AKVRE--VMNSPVITIDANDSIAKARWLMSNNNI--SRLPVLDDKGKVGGIVTEDDIL 111 (113)
T ss_pred CcHHH--hccCCceEECCCCcHHHHHHHHHHcCC--CeeeEECCCCeEEEEEEHHHhh
Confidence 45655 678889999999999999999999988 9999999999999997765553
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera |
| >cd04803 CBS_pair_15 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=99.05 E-value=2e-09 Score=89.65 Aligned_cols=113 Identities=29% Similarity=0.350 Sum_probs=87.8
Q ss_pred ceEEeCCCCCHHHHHHHHh-cCCceEEEeccCcchhhhhhhcccccccccCCCCceeeeecHHHHHHHHHhccCCCC---
Q 016003 107 LVMHVEPSCSLLEAMDLML-GGAQNLVVPIKNRLSIKRKQQQKLSSSSLTNHNGREFCWLTQEDIIRFILSSISLFS--- 182 (397)
Q Consensus 107 ~~~~V~~~~sL~~al~~m~-~g~~r~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IITq~DIi~~l~~~~~~l~--- 182 (397)
++.++.+++++.++++.|. .++++++|.+.+ ++.+|++|..|+.+++..+.....
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~---------------------~~~~G~v~~~~l~~~~~~~~~~~~~~~ 60 (122)
T cd04803 2 PVVTLSEDDSLADAEELMREHRIRHLPVVNED---------------------GKLVGLLTQRDLLRAALSSLSDNGEES 60 (122)
T ss_pred CCEEeCCCCcHHHHHHHHHHcCcccccEECCC---------------------CCEEEEEEHHHHHHHhccccccccccc
Confidence 4778999999999999998 678888876431 467899999999988754221100
Q ss_pred --CCccCCccccCCCCcCeEEEeCCCcHHHHHHHHHhcCCCCCEEEEEcCCCcEEEeeccCccc
Q 016003 183 --PIPALSIDSLGIISTDVVAVDYHSPASLALEAISRSLFDQTSVAVVDSDGFLIGEISPSTLG 244 (397)
Q Consensus 183 --~l~~~ti~~L~~~~~~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~is~~dl~ 244 (397)
.....++.+ +|..++.++.+++++.++++.|.+.+. ..+||+|++|+++|+||..||.
T Consensus 61 ~~~~~~~~v~~--~~~~~~~~v~~~~~~~~~~~~~~~~~~--~~~~Vv~~~~~~~Gvit~~dl~ 120 (122)
T cd04803 61 LTKERDVPVAE--VMKTDVLTVTPDTPLREAAEIMVENKI--GCLPVVDDKGTLVGIITRSDFL 120 (122)
T ss_pred cccccCcCHHH--hhCCCCeEeCCCCcHHHHHHHHHHcCC--CeEEEEcCCCCEEEEEEHHHhh
Confidence 112344554 678889999999999999999999988 9999999889999997655543
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener |
| >cd04587 CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain | Back alignment and domain information |
|---|
Probab=99.05 E-value=2.6e-09 Score=87.62 Aligned_cols=109 Identities=20% Similarity=0.299 Sum_probs=86.3
Q ss_pred ceEEeCCCCCHHHHHHHHh-cCCceEEEeccCcchhhhhhhcccccccccCCCCceeeeecHHHHHHHHHhccCCCCCCc
Q 016003 107 LVMHVEPSCSLLEAMDLML-GGAQNLVVPIKNRLSIKRKQQQKLSSSSLTNHNGREFCWLTQEDIIRFILSSISLFSPIP 185 (397)
Q Consensus 107 ~~~~V~~~~sL~~al~~m~-~g~~r~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IITq~DIi~~l~~~~~~l~~l~ 185 (397)
+++.+.+++++.++++.|. ++.++++|.+. ++.+|+||..|+++.+.+.. ... .
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~----------------------~~~~G~v~~~dl~~~~~~~~--~~~-~ 56 (113)
T cd04587 2 KPATVSPTTTVQEAAKLMREKRVSCVLVMDG----------------------NKLVGIFTSKDIALRVVAQG--LDP-E 56 (113)
T ss_pred CCeEeCCCCCHHHHHHHHHHcCCCeEEEEEC----------------------CEEEEEEEhHHHHHHHHhcC--CCc-C
Confidence 4778999999999999988 67777777642 35678999999997665421 111 1
Q ss_pred cCCccccCCCCcCeEEEeCCCcHHHHHHHHHhcCCCCCEEEEEcCCCcEEEeeccCccc
Q 016003 186 ALSIDSLGIISTDVVAVDYHSPASLALEAISRSLFDQTSVAVVDSDGFLIGEISPSTLG 244 (397)
Q Consensus 186 ~~ti~~L~~~~~~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~is~~dl~ 244 (397)
..++.+ +|..++.++.+++++.++++.|.+++. ..+||++++|+++|+||..||.
T Consensus 57 ~~~v~~--i~~~~~~~v~~~~~l~~~~~~~~~~~~--~~l~Vv~~~~~~~Gvvs~~dl~ 111 (113)
T cd04587 57 STLVER--VMTPNPVCATSDTPVLEALHLMVQGKF--RHLPVVDKSGQVVGLLDVTKLT 111 (113)
T ss_pred cCCHHH--hcCCCCeEEcCCCCHHHHHHHHHHcCC--CcccEECCCCCEEEEEEHHHhc
Confidence 245665 678889999999999999999999988 9999999889999997766554
|
Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pai |
| >cd04800 CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain | Back alignment and domain information |
|---|
Probab=99.05 E-value=4e-09 Score=86.30 Aligned_cols=109 Identities=25% Similarity=0.289 Sum_probs=89.9
Q ss_pred CCeEEEeCChhHHHHHHHHhhCCCceEEEEccCCCCCCCCCCCCCCCeEEEEEehhHHHHHHhhcCCCCChhhhhcCChh
Q 016003 18 PALRALSISAAIADALSALKNSDESFISVWDCNCCSNHRKLGDACECQCVGKVCMVDVICYLCKDSNSLSPSLALKQPVS 97 (397)
Q Consensus 18 ~~li~v~~~~tv~~Al~~L~~~~I~s~PV~d~~~~~~~~~~~~~~~~~~vGiv~~~Dil~~l~~~~~l~~~~~~~~~~V~ 97 (397)
+++.+++++.++.+|++.|.++++..+||.+. ++++|+++..|++.++..+. .....++.
T Consensus 1 ~~~~~v~~~~~~~~~~~~~~~~~~~~i~V~~~--------------~~~~G~v~~~~l~~~~~~~~------~~~~~~i~ 60 (111)
T cd04800 1 RPPVTCSPDTTIREAARLMTEHRVSSLLVVDD--------------GRLVGIVTDRDLRNRVVAEG------LDPDTPVS 60 (111)
T ss_pred CCCEEECCCCcHHHHHHHHHHcCCCeEEEEEC--------------CEEEEEEEhHHHHHHHhccC------CCccCCHH
Confidence 46788999999999999999999999999995 48999999999998765421 11235788
Q ss_pred hhccCCCCCceEEeCCCCCHHHHHHHHh-cCCceEEEeccCcchhhhhhhcccccccccCCCCceeeeecHHHHHH
Q 016003 98 VLLPQLLPPLVMHVEPSCSLLEAMDLML-GGAQNLVVPIKNRLSIKRKQQQKLSSSSLTNHNGREFCWLTQEDIIR 172 (397)
Q Consensus 98 ~lm~~~~~~~~~~V~~~~sL~~al~~m~-~g~~r~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IITq~DIi~ 172 (397)
++|... ++.+.++++|.++++.|. .+.++++|.+. +..+|+||..|+++
T Consensus 61 ~~~~~~----~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~----------------------~~~~Giit~~di~~ 110 (111)
T cd04800 61 EVMTAP----PITIPPDATVFEALLLMLERGIHHLPVVDD----------------------GRLVGVISATDLLR 110 (111)
T ss_pred HHhCCC----CeEECCCCcHHHHHHHHHHcCCCeeeEeEC----------------------CEEEEEEEHHHhhc
Confidence 888654 889999999999999999 78888887642 35689999999975
|
Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pa |
| >cd04626 CBS_pair_13 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=99.04 E-value=3e-09 Score=87.15 Aligned_cols=108 Identities=23% Similarity=0.217 Sum_probs=89.1
Q ss_pred CeEEEeCChhHHHHHHHHhhCCCceEEEEccCCCCCCCCCCCCCCCeEEEEEehhHHHHHHhhcCCCCChhhhhcCChhh
Q 016003 19 ALRALSISAAIADALSALKNSDESFISVWDCNCCSNHRKLGDACECQCVGKVCMVDVICYLCKDSNSLSPSLALKQPVSV 98 (397)
Q Consensus 19 ~li~v~~~~tv~~Al~~L~~~~I~s~PV~d~~~~~~~~~~~~~~~~~~vGiv~~~Dil~~l~~~~~l~~~~~~~~~~V~~ 98 (397)
++..+++++++.+|++.|.++++..+||++. .++++|+++..|+..+..... ..+.++.+
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~-------------~~~~~G~v~~~dl~~~~~~~~-------~~~~~v~~ 61 (111)
T cd04626 2 DFPTIDEDASIREALHEMLKYNTNEIIVKDN-------------EEKLKGVVTFTDILDLDLFES-------FLEKKVFN 61 (111)
T ss_pred CceEECCCccHHHHHHHHHHhCCCeEEEEcC-------------CCCEEEEEehHHhHHHHhhcc-------cccCcHHH
Confidence 5678999999999999999999999999986 368999999999997754311 12457888
Q ss_pred hccCCCCCceEEeCCCCCHHHHHHHHh-cCCceEEEeccCcchhhhhhhcccccccccCCCCceeeeecHHHHHH
Q 016003 99 LLPQLLPPLVMHVEPSCSLLEAMDLML-GGAQNLVVPIKNRLSIKRKQQQKLSSSSLTNHNGREFCWLTQEDIIR 172 (397)
Q Consensus 99 lm~~~~~~~~~~V~~~~sL~~al~~m~-~g~~r~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IITq~DIi~ 172 (397)
+|... ++++.+++++.++++.|. ++..+++|.++ +..+|+||..|+++
T Consensus 62 ~~~~~----~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~----------------------~~~~G~it~~di~~ 110 (111)
T cd04626 62 IVSQD----VFYVNEEDTIDEALDIMREKQIGRLPVVDD----------------------NKLIGVVRTKDILD 110 (111)
T ss_pred HhcCC----cEEEcCCCcHHHHHHHHHHcCCCeeeEeEC----------------------CEEEEEEEhHHhcc
Confidence 88543 889999999999999998 78899988753 24678999999863
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener |
| >cd04586 CBS_pair_BON_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the BON (bacterial OsmY and nodulation domain) domain | Back alignment and domain information |
|---|
Probab=99.04 E-value=1.8e-09 Score=92.10 Aligned_cols=116 Identities=19% Similarity=0.199 Sum_probs=91.4
Q ss_pred CCeEEEeCChhHHHHHHHHhhCCCceEEEEccCCCCCCCCCCCCCCCeEEEEEehhHHHHHHhhcCCCC---------Ch
Q 016003 18 PALRALSISAAIADALSALKNSDESFISVWDCNCCSNHRKLGDACECQCVGKVCMVDVICYLCKDSNSL---------SP 88 (397)
Q Consensus 18 ~~li~v~~~~tv~~Al~~L~~~~I~s~PV~d~~~~~~~~~~~~~~~~~~vGiv~~~Dil~~l~~~~~l~---------~~ 88 (397)
+++.++++++++.+|++.|.++++..+||+|. .++++|+++..|++.++....... ..
T Consensus 2 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vvd~-------------~~~~~Gvi~~~dl~~~~~~~~~~~~~~~~~~~~~~ 68 (135)
T cd04586 2 TDVVTVSPETSVAEAARLMLDNHISGLPVVDD-------------DGRLVGIVSEGDLLRRAELGTERRRARWLDLLAGA 68 (135)
T ss_pred CCCEEeCCCCCHHHHHHHHHHcCCCCceEECC-------------CCCEEEEeeHHHHHHHhcccCcchhhhHHHHhcch
Confidence 56889999999999999999999999999996 368999999999998664321000 00
Q ss_pred h-------hhhcCChhhhccCCCCCceEEeCCCCCHHHHHHHHh-cCCceEEEeccCcchhhhhhhcccccccccCCCCc
Q 016003 89 S-------LALKQPVSVLLPQLLPPLVMHVEPSCSLLEAMDLML-GGAQNLVVPIKNRLSIKRKQQQKLSSSSLTNHNGR 160 (397)
Q Consensus 89 ~-------~~~~~~V~~lm~~~~~~~~~~V~~~~sL~~al~~m~-~g~~r~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (397)
. .....++.++|... ++.+.+++++.++++.|. .+.++++|.+ . +.
T Consensus 69 ~~~~~~~~~~~~~~v~~~~~~~----~~~v~~~~~~~~~~~~~~~~~~~~l~Vvd-~---------------------g~ 122 (135)
T cd04586 69 EELAAAFVRSHGRKVADVMTRP----VVTVGEDTPLAEVAELMEEHRIKRVPVVR-G---------------------GR 122 (135)
T ss_pred HHHHHHHHHhcCCCHHHHhCCC----ceEeCCCCcHHHHHHHHHHcCCCccCEec-C---------------------CE
Confidence 0 11235688888543 889999999999999999 7899998875 2 35
Q ss_pred eeeeecHHHHHH
Q 016003 161 EFCWLTQEDIIR 172 (397)
Q Consensus 161 ~~~IITq~DIi~ 172 (397)
.+|+||+.|+++
T Consensus 123 ~~Gvit~~di~~ 134 (135)
T cd04586 123 LVGIVSRADLLR 134 (135)
T ss_pred EEEEEEhHhhhc
Confidence 689999999975
|
BON is a putative phospholipid-binding domain found in a family of osmotic shock protection proteins. It is also found in some secretins and a group of potential haemolysins. Its likely function is attachment to phospholipid membranes. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. |
| >cd04605 CBS_pair_MET2_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the MET2 domain | Back alignment and domain information |
|---|
Probab=99.04 E-value=5.7e-09 Score=85.23 Aligned_cols=107 Identities=22% Similarity=0.235 Sum_probs=88.7
Q ss_pred CCeEEEeCChhHHHHHHHHhhCCCceEEEEccCCCCCCCCCCCCCCCeEEEEEehhHHHHHHhhcCCCCChhhhhcCChh
Q 016003 18 PALRALSISAAIADALSALKNSDESFISVWDCNCCSNHRKLGDACECQCVGKVCMVDVICYLCKDSNSLSPSLALKQPVS 97 (397)
Q Consensus 18 ~~li~v~~~~tv~~Al~~L~~~~I~s~PV~d~~~~~~~~~~~~~~~~~~vGiv~~~Dil~~l~~~~~l~~~~~~~~~~V~ 97 (397)
+++++++++.++.+|++.|.++++..+||.|. .++++|+++..|++..+..+ ..++.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~-------------~~~~~G~v~~~~l~~~~~~~----------~~~~~ 58 (110)
T cd04605 2 RPVVTISEDASIKEAAKLMIEENINHLPVVDE-------------DGRLVGIVTSWDISKAVARD----------KKSVE 58 (110)
T ss_pred CCCEEECCCCCHHHHHHHHHhCCCceEEEECC-------------CCcEEEEEeHHHHHHHHhhC----------ccCHH
Confidence 46788999999999999999999999999986 36899999999999876532 12478
Q ss_pred hhccCCCCCceEEeCCCCCHHHHHHHHh-cCCceEEEeccCcchhhhhhhcccccccccCCCCceeeeecHHHHHH
Q 016003 98 VLLPQLLPPLVMHVEPSCSLLEAMDLML-GGAQNLVVPIKNRLSIKRKQQQKLSSSSLTNHNGREFCWLTQEDIIR 172 (397)
Q Consensus 98 ~lm~~~~~~~~~~V~~~~sL~~al~~m~-~g~~r~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IITq~DIi~ 172 (397)
++|... +..+.+++++.++++.|. ++.+.++|...+ +...|+||+.|+++
T Consensus 59 ~~~~~~----~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~---------------------~~~~G~v~~~di~~ 109 (110)
T cd04605 59 DIMTRN----VITATPDEPIDVAARKMERHNISALPVVDAE---------------------NRVIGIITSEDISK 109 (110)
T ss_pred HhcCCC----CeEECCCCcHHHHHHHHHHhCCCEEeEECCC---------------------CcEEEEEEHHHhhh
Confidence 888543 889999999999999999 678888887532 45789999999864
|
Met2 is a key enzyme in the biosynthesis of methionine. It encodes a homoserine transacetylase involved in converting homoserine to O-acetyl homoserine. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. |
| >cd04609 CBS_pair_PALP_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream | Back alignment and domain information |
|---|
Probab=99.04 E-value=2.9e-09 Score=86.56 Aligned_cols=109 Identities=18% Similarity=0.302 Sum_probs=87.1
Q ss_pred CeEEEeCChhHHHHHHHHhhCCCceEEEEccCCCCCCCCCCCCCCCeEEEEEehhHHHHHHhhcCCCCChhhhhcCChhh
Q 016003 19 ALRALSISAAIADALSALKNSDESFISVWDCNCCSNHRKLGDACECQCVGKVCMVDVICYLCKDSNSLSPSLALKQPVSV 98 (397)
Q Consensus 19 ~li~v~~~~tv~~Al~~L~~~~I~s~PV~d~~~~~~~~~~~~~~~~~~vGiv~~~Dil~~l~~~~~l~~~~~~~~~~V~~ 98 (397)
+++++++++++.+|++.|.++++..+||.+. ++++|+++..|+.+.+.+... ....++.+
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~--------------~~~~G~v~~~dl~~~~~~~~~------~~~~~~~~ 61 (110)
T cd04609 2 DVVSVAPDDTVSQAIERMREYGVSQLPVVDD--------------GRVVGSIDESDLLDALIEGKA------KFSLPVRE 61 (110)
T ss_pred CcEEECCCCcHHHHHHHHHHcCCceeeEeeC--------------CeeEEEEeHHHHHHHHhcccc------ccCcCHHH
Confidence 5688999999999999999999999999985 479999999999998764211 12467888
Q ss_pred hccCCCCCceEEeCCCCCHHHHHHHHhcCCceEEEeccCcchhhhhhhcccccccccCCCCceeeeecHHHHHHH
Q 016003 99 LLPQLLPPLVMHVEPSCSLLEAMDLMLGGAQNLVVPIKNRLSIKRKQQQKLSSSSLTNHNGREFCWLTQEDIIRF 173 (397)
Q Consensus 99 lm~~~~~~~~~~V~~~~sL~~al~~m~~g~~r~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IITq~DIi~~ 173 (397)
+|... +..+.+++++.+++++|.+. +.++|+.++ +...|+||++||++|
T Consensus 62 ~~~~~----~~~v~~~~~l~~~~~~~~~~-~~~~vv~~~---------------------~~~~Gvvt~~di~~~ 110 (110)
T cd04609 62 VMGEP----LPTVDPDAPIEELSELLDRG-NVAVVVDEG---------------------GKFVGIITRADLLKY 110 (110)
T ss_pred HhcCC----CceeCCCCcHHHHHHHHHhC-CceeEEecC---------------------CeEEEEEeHHHhhcC
Confidence 88644 78899999999999988763 345554321 357899999999876
|
The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a pote |
| >cd04582 CBS_pair_ABC_OpuCA_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA | Back alignment and domain information |
|---|
Probab=99.03 E-value=3e-09 Score=86.28 Aligned_cols=102 Identities=20% Similarity=0.242 Sum_probs=81.3
Q ss_pred ceEEeCCCCCHHHHHHHHh-cCCceEEEeccCcchhhhhhhcccccccccCCCCceeeeecHHHHHHHHHhccCCCCCCc
Q 016003 107 LVMHVEPSCSLLEAMDLML-GGAQNLVVPIKNRLSIKRKQQQKLSSSSLTNHNGREFCWLTQEDIIRFILSSISLFSPIP 185 (397)
Q Consensus 107 ~~~~V~~~~sL~~al~~m~-~g~~r~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IITq~DIi~~l~~~~~~l~~l~ 185 (397)
+++++.++.++.+|++.|. ++.++++|.+. +++.+|++|..|+.+...
T Consensus 2 ~~~~v~~~~~~~~a~~~~~~~~~~~~~v~d~---------------------~g~~~Giv~~~dl~~~~~---------- 50 (106)
T cd04582 2 EPITVRPDDPLSDALGLMDDSDLRALTVVDA---------------------DGQPLGFVTRREAARASG---------- 50 (106)
T ss_pred CCcEecCCCcHHHHHHHHHhcCCCEEEEECC---------------------CCCEEEEEeHHHHHHhcc----------
Confidence 3678899999999999887 56677776642 246789999999986421
Q ss_pred cCCccccCCCCcCeEEEeCCCcHHHHHHHHHhcCCCCCEEEEEcCCCcEEEeeccCccc
Q 016003 186 ALSIDSLGIISTDVVAVDYHSPASLALEAISRSLFDQTSVAVVDSDGFLIGEISPSTLG 244 (397)
Q Consensus 186 ~~ti~~L~~~~~~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~is~~dl~ 244 (397)
.++.+ +|.+.+.++.+++++.+|++.|.++++ +.+||+|++|+++|+||..+|.
T Consensus 51 -~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~Vv~~~~~~~Gvi~~~~l~ 104 (106)
T cd04582 51 -GCCGD--HAEPFKVTVSVDDDLRIVLSRMFAHDM--SWLPCVDEDGRYVGEVTQRSIA 104 (106)
T ss_pred -cchhh--hcccCCEEECCCCCHHHHHHHHHHCCC--CeeeEECCCCcEEEEEEHHHhh
Confidence 12433 577778889999999999999999999 9999999989999997755543
|
OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzi |
| >cd04625 CBS_pair_12 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=99.03 E-value=5.1e-09 Score=85.81 Aligned_cols=110 Identities=15% Similarity=0.203 Sum_probs=88.7
Q ss_pred CeEEEeCChhHHHHHHHHhhCCCceEEEEccCCCCCCCCCCCCCCCeEEEEEehhHHHHHHhhcCCCCChhhhhcCChhh
Q 016003 19 ALRALSISAAIADALSALKNSDESFISVWDCNCCSNHRKLGDACECQCVGKVCMVDVICYLCKDSNSLSPSLALKQPVSV 98 (397)
Q Consensus 19 ~li~v~~~~tv~~Al~~L~~~~I~s~PV~d~~~~~~~~~~~~~~~~~~vGiv~~~Dil~~l~~~~~l~~~~~~~~~~V~~ 98 (397)
.+.++++++++.+|++.|.+++...+||.+. ++++|+++..|+..++.+... .....++.+
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~~--------------~~~~G~v~~~dl~~~~~~~~~-----~~~~~~v~~ 62 (112)
T cd04625 2 TIYTVAPETLLSEAVATMAEQDLGSLVVMER--------------GELVGLLTFREVLQAMAQHGA-----GVLDTTVRA 62 (112)
T ss_pred CcEEECCCCcHHHHHHHHHHcCCCeEEEeeC--------------CEEEEEEEHHHHHHHHHhcCC-----chhcCCHHH
Confidence 5688999999999999999999888887763 689999999999988764210 112457999
Q ss_pred hccCCCCCceEEeCCCCCHHHHHHHHh-cCCceEEEeccCcchhhhhhhcccccccccCCCCceeeeecHHHHHHH
Q 016003 99 LLPQLLPPLVMHVEPSCSLLEAMDLML-GGAQNLVVPIKNRLSIKRKQQQKLSSSSLTNHNGREFCWLTQEDIIRF 173 (397)
Q Consensus 99 lm~~~~~~~~~~V~~~~sL~~al~~m~-~g~~r~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IITq~DIi~~ 173 (397)
+|... +..+.+++++.++++.|. ++..+++|.++ ++.+|+||..|++++
T Consensus 63 ~~~~~----~~~v~~~~~l~~a~~~m~~~~~~~l~Vv~~----------------------~~~~Gvvt~~dl~~~ 112 (112)
T cd04625 63 IMNPE----PIVASPDDSIDEVRRLMVERHLRYLPVLDG----------------------GTLLGVISFHDVAKA 112 (112)
T ss_pred HhCCC----CeEECCCCCHHHHHHHHHHcCCCeeeEEEC----------------------CEEEEEEEHHHhhcC
Confidence 99543 788999999999999998 78889988742 356899999999863
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener |
| >cd04611 CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with a PAS domain, a GGDEF (DiGuanylate-Cyclase (DGC) domain, and a DUF1 domain downstream | Back alignment and domain information |
|---|
Probab=99.03 E-value=4e-09 Score=86.05 Aligned_cols=108 Identities=25% Similarity=0.321 Sum_probs=87.0
Q ss_pred ceEEeCCCCCHHHHHHHHh-cCCceEEEeccCcchhhhhhhcccccccccCCCCceeeeecHHHHHHHHHhccCCCCCCc
Q 016003 107 LVMHVEPSCSLLEAMDLML-GGAQNLVVPIKNRLSIKRKQQQKLSSSSLTNHNGREFCWLTQEDIIRFILSSISLFSPIP 185 (397)
Q Consensus 107 ~~~~V~~~~sL~~al~~m~-~g~~r~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IITq~DIi~~l~~~~~~l~~l~ 185 (397)
+++.+.++.++.++++.|. ++.+.++|.+. ++.+|+++..|+.++..+... .
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~----------------------~~~~G~v~~~~l~~~~~~~~~-----~ 54 (111)
T cd04611 2 QILTCPPDTSLAEAASRMRERRISSIVVVDD----------------------GRPLGIVTERDILRLLASGPD-----L 54 (111)
T ss_pred CceEECCCCcHHHHHHHHHHcCCCEEEEeeC----------------------CEEEEEEeHHHHHHHHhcCCC-----C
Confidence 4678999999999999998 56777777542 356889999999988753211 2
Q ss_pred cCCccccCCCCcCeEEEeCCCcHHHHHHHHHhcCCCCCEEEEEcCCCcEEEeeccCcccC
Q 016003 186 ALSIDSLGIISTDVVAVDYHSPASLALEAISRSLFDQTSVAVVDSDGFLIGEISPSTLGC 245 (397)
Q Consensus 186 ~~ti~~L~~~~~~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~is~~dl~~ 245 (397)
..++++ +|.++++++.+++++.++++.|.+.+. ..+||+|++|+++|+||.+||.+
T Consensus 55 ~~~v~~--~~~~~~~~~~~~~~l~~~l~~~~~~~~--~~~~Vv~~~~~~~Gvi~~~di~~ 110 (111)
T cd04611 55 QTPVGE--VMSSPLLTVPADTSLYDARQLMREHGI--RHLVVVDDDGELLGLLSQTDLLQ 110 (111)
T ss_pred CcCHHH--hcCCCceEECCCCCHHHHHHHHHHcCC--eEEEEECCCCcEEEEEEhHHhhc
Confidence 445655 578889999999999999999999888 99999999899999987666543
|
PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CB |
| >cd04620 CBS_pair_7 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=99.02 E-value=5.4e-09 Score=86.19 Aligned_cols=109 Identities=17% Similarity=0.231 Sum_probs=86.5
Q ss_pred CeEEEeCChhHHHHHHHHhhCC-CceEEEEccCCCCCCCCCCCCCCCeEEEEEehhHHHHHHhhcCCCCChhhhhcCChh
Q 016003 19 ALRALSISAAIADALSALKNSD-ESFISVWDCNCCSNHRKLGDACECQCVGKVCMVDVICYLCKDSNSLSPSLALKQPVS 97 (397)
Q Consensus 19 ~li~v~~~~tv~~Al~~L~~~~-I~s~PV~d~~~~~~~~~~~~~~~~~~vGiv~~~Dil~~l~~~~~l~~~~~~~~~~V~ 97 (397)
+..+++++.|+.+|++.|.+++ ...+||.+. ++++|+++..|++.++.+... ..+.++.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--------------~~~~G~v~~~dl~~~~~~~~~------~~~~~i~ 61 (115)
T cd04620 2 HPLTVTPDTPVADAIALMSQQGDSSCVLVVEK--------------GRLLGIFTERDIVRLTAIGKD------LSDLPIG 61 (115)
T ss_pred CCeEeCCCCcHHHHHHHHHhcCCCceEEEcCC--------------CcEEEEEeHHHHHHHHhcCCC------ccccCHH
Confidence 4578899999999999999988 677888773 589999999999987654211 1235788
Q ss_pred hhccCCCCCceEEeCCC--CCHHHHHHHHh-cCCceEEEeccCcchhhhhhhcccccccccCCCCceeeeecHHHHHH
Q 016003 98 VLLPQLLPPLVMHVEPS--CSLLEAMDLML-GGAQNLVVPIKNRLSIKRKQQQKLSSSSLTNHNGREFCWLTQEDIIR 172 (397)
Q Consensus 98 ~lm~~~~~~~~~~V~~~--~sL~~al~~m~-~g~~r~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IITq~DIi~ 172 (397)
++|... ++++.++ +++.++++.|. ++.++++|.+++ +..+|+||+.|+++
T Consensus 62 ~~~~~~----~~~v~~~~~~~l~~a~~~~~~~~~~~~pVvd~~---------------------~~~~Gvit~~dl~~ 114 (115)
T cd04620 62 EVMTQP----VVTLQESEIQDIFTALSLFRQHQIRHLPVLDDQ---------------------GQLIGLVTAESIRQ 114 (115)
T ss_pred HhcCCC----cEEEecccccCHHHHHHHHHHhCCceEEEEcCC---------------------CCEEEEEEhHHhhc
Confidence 888543 7778876 78999999999 788999887532 45789999999975
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera |
| >cd04583 CBS_pair_ABC_OpuCA_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA | Back alignment and domain information |
|---|
Probab=99.02 E-value=6.2e-09 Score=84.61 Aligned_cols=105 Identities=16% Similarity=0.274 Sum_probs=87.6
Q ss_pred CeEEEeCChhHHHHHHHHhhCCCceEEEEccCCCCCCCCCCCCCCCeEEEEEehhHHHHHHhhcCCCCChhhhhcCChhh
Q 016003 19 ALRALSISAAIADALSALKNSDESFISVWDCNCCSNHRKLGDACECQCVGKVCMVDVICYLCKDSNSLSPSLALKQPVSV 98 (397)
Q Consensus 19 ~li~v~~~~tv~~Al~~L~~~~I~s~PV~d~~~~~~~~~~~~~~~~~~vGiv~~~Dil~~l~~~~~l~~~~~~~~~~V~~ 98 (397)
+...+++++++.+|++.|.++++..+||.|.+ ++++|+++..|++..... ..++.+
T Consensus 3 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~-------------~~~~G~v~~~dl~~~~~~-----------~~~v~~ 58 (109)
T cd04583 3 NPVTITPDRTLAEAIKLMRDKKVDSLLVVDKD-------------NKLLGIVSLESLEQAYKE-----------AKSLED 58 (109)
T ss_pred CCEEECCCCCHHHHHHHHHHCCCceEEEEcCC-------------CcEEEEEEHHHHHHHhhc-----------CCcHhH
Confidence 56789999999999999999999999999963 689999999999876422 246788
Q ss_pred hccCCCCCceEEeCCCCCHHHHHHHHh-cCCceEEEeccCcchhhhhhhcccccccccCCCCceeeeecHHHHHH
Q 016003 99 LLPQLLPPLVMHVEPSCSLLEAMDLML-GGAQNLVVPIKNRLSIKRKQQQKLSSSSLTNHNGREFCWLTQEDIIR 172 (397)
Q Consensus 99 lm~~~~~~~~~~V~~~~sL~~al~~m~-~g~~r~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IITq~DIi~ 172 (397)
+|... +..+.+++++.++++.|. .+.++++|...+ +..+|+||+.|+++
T Consensus 59 ~~~~~----~~~v~~~~~~~~~~~~~~~~~~~~~~vv~~~---------------------g~~~Gvit~~~l~~ 108 (109)
T cd04583 59 IMLED----VFTVQPDASLRDVLGLVLKRGPKYVPVVDED---------------------GKLVGLITRSSLVD 108 (109)
T ss_pred hhcCC----ceEECCCCcHHHHHHHHHHcCCceeeEECCC---------------------CeEEEEEehHHhhc
Confidence 88644 788999999999999998 688888887532 45789999999874
|
OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyz |
| >cd04585 CBS_pair_ACT_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria | Back alignment and domain information |
|---|
Probab=99.01 E-value=6e-09 Score=86.21 Aligned_cols=116 Identities=24% Similarity=0.230 Sum_probs=90.6
Q ss_pred CeEEEeCChhHHHHHHHHhhCCCceEEEEccCCCCCCCCCCCCCCCeEEEEEehhHHHHHHhhcCCCC---Chhh-hhcC
Q 016003 19 ALRALSISAAIADALSALKNSDESFISVWDCNCCSNHRKLGDACECQCVGKVCMVDVICYLCKDSNSL---SPSL-ALKQ 94 (397)
Q Consensus 19 ~li~v~~~~tv~~Al~~L~~~~I~s~PV~d~~~~~~~~~~~~~~~~~~vGiv~~~Dil~~l~~~~~l~---~~~~-~~~~ 94 (397)
++.+++++.++.+|++.|.++++..+||+|. ++++|+++..|++.++....... +... .-+.
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~--------------~~~~G~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 67 (122)
T cd04585 2 NPITVTPDTSLMEALKLMKENSIRRLPVVDR--------------GKLVGIVTDRDLKLASPSKATTLDIWELYYLLSKI 67 (122)
T ss_pred CCEEeCCCCcHHHHHHHHHhCCcceeeEecC--------------CeEEEEEeHHHHHHhhhcccccccchhhhhhhccc
Confidence 5678999999999999999999999999995 48999999999998865311000 0000 1135
Q ss_pred ChhhhccCCCCCceEEeCCCCCHHHHHHHHh-cCCceEEEeccCcchhhhhhhcccccccccCCCCceeeeecHHHHHHH
Q 016003 95 PVSVLLPQLLPPLVMHVEPSCSLLEAMDLML-GGAQNLVVPIKNRLSIKRKQQQKLSSSSLTNHNGREFCWLTQEDIIRF 173 (397)
Q Consensus 95 ~V~~lm~~~~~~~~~~V~~~~sL~~al~~m~-~g~~r~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IITq~DIi~~ 173 (397)
++.++|... +..+.+++++.+++..|. ++.++++|...+ +..+|+||+.|++++
T Consensus 68 ~~~~~~~~~----~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~---------------------~~~~Gvvt~~di~~~ 122 (122)
T cd04585 68 KVSDIMTRD----PITVSPDASVEEAAELMLERKISGLPVVDDQ---------------------GRLVGIITESDLFRA 122 (122)
T ss_pred CHHHhccCC----CeEeCCCCcHHHHHHHHHHcCCCceeEECCC---------------------CcEEEEEEHHHhhhC
Confidence 688888654 889999999999999998 788888887531 467899999999863
|
Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The i |
| >cd04595 CBS_pair_DHH_polyA_Pol_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with an upstream DHH domain which performs a phosphoesterase function and a downstream polyA polymerase domain | Back alignment and domain information |
|---|
Probab=99.01 E-value=6.7e-09 Score=84.93 Aligned_cols=107 Identities=23% Similarity=0.274 Sum_probs=89.6
Q ss_pred CCeEEEeCChhHHHHHHHHhhCCCceEEEEccCCCCCCCCCCCCCCCeEEEEEehhHHHHHHhhcCCCCChhhhhcCChh
Q 016003 18 PALRALSISAAIADALSALKNSDESFISVWDCNCCSNHRKLGDACECQCVGKVCMVDVICYLCKDSNSLSPSLALKQPVS 97 (397)
Q Consensus 18 ~~li~v~~~~tv~~Al~~L~~~~I~s~PV~d~~~~~~~~~~~~~~~~~~vGiv~~~Dil~~l~~~~~l~~~~~~~~~~V~ 97 (397)
+++++++.+.++.+|++.|.++++..+||.|. ++++|+++..|+...+... ....++.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~--------------~~~~G~v~~~dl~~~~~~~--------~~~~~~~ 59 (110)
T cd04595 2 SPVKTVRPEATIEEARELLLRYGHTALPVVEG--------------GRVVGIISRRDVEKALRHG--------LGHAPVK 59 (110)
T ss_pred CCceEeCCCCcHHHHHHHHHHcCCCeeeEeeC--------------CEEEEEEEHHHHHHHHhcc--------cccCcHH
Confidence 57889999999999999999999999999995 4899999999998765321 1346788
Q ss_pred hhccCCCCCceEEeCCCCCHHHHHHHHh-cCCceEEEeccCcchhhhhhhcccccccccCCCCceeeeecHHHHHH
Q 016003 98 VLLPQLLPPLVMHVEPSCSLLEAMDLML-GGAQNLVVPIKNRLSIKRKQQQKLSSSSLTNHNGREFCWLTQEDIIR 172 (397)
Q Consensus 98 ~lm~~~~~~~~~~V~~~~sL~~al~~m~-~g~~r~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IITq~DIi~ 172 (397)
++|... ++.+.+++++.++++.|. ++.++++|.+ + +..+|+||+.|+++
T Consensus 60 ~~~~~~----~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~---------------------~~~~Gvvt~~di~~ 109 (110)
T cd04595 60 DYMSTD----VVTVPPDTPLSEVQELMVEHDIGRVPVVE-D---------------------GRLVGIVTRTDLLR 109 (110)
T ss_pred HHhcCC----CEEECCCCcHHHHHHHHHHcCCCeeEEEe-C---------------------CEEEEEEEhHHhhc
Confidence 999654 788999999999999999 7888888764 1 35689999999875
|
CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. |
| >cd04633 CBS_pair_20 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=99.01 E-value=4.5e-09 Score=87.36 Aligned_cols=115 Identities=23% Similarity=0.257 Sum_probs=90.8
Q ss_pred CeEEEeCChhHHHHHHHHhhCCCceEEEEccCCCCCCCCCCCCCCCeEEEEEehhHHHHHHhhcCCC---CChhhh-hcC
Q 016003 19 ALRALSISAAIADALSALKNSDESFISVWDCNCCSNHRKLGDACECQCVGKVCMVDVICYLCKDSNS---LSPSLA-LKQ 94 (397)
Q Consensus 19 ~li~v~~~~tv~~Al~~L~~~~I~s~PV~d~~~~~~~~~~~~~~~~~~vGiv~~~Dil~~l~~~~~l---~~~~~~-~~~ 94 (397)
+++++++++++.+|++.|.++++..+||++. ++++|+++..|+...+...... ...... ...
T Consensus 2 ~~~~i~~~~~~~~~~~~l~~~~~~~i~V~~~--------------~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 67 (121)
T cd04633 2 PVITVSPDDRVSHARRLMLDHDISRLPVIEG--------------GKLVGIVTEKDIADALRSFRPLVRDRHQERRIRNL 67 (121)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCeeEEEEC--------------CEEEEEEchHHHHHhhhhhhhcccchhhhhhhhcc
Confidence 4678999999999999999999999999994 5899999999999876531100 000111 245
Q ss_pred ChhhhccCCCCCceEEeCCCCCHHHHHHHHh-cCCceEEEeccCcchhhhhhhcccccccccCCCCceeeeecHHHHHHH
Q 016003 95 PVSVLLPQLLPPLVMHVEPSCSLLEAMDLML-GGAQNLVVPIKNRLSIKRKQQQKLSSSSLTNHNGREFCWLTQEDIIRF 173 (397)
Q Consensus 95 ~V~~lm~~~~~~~~~~V~~~~sL~~al~~m~-~g~~r~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IITq~DIi~~ 173 (397)
++.++|... ++.+.+++++.++++.|. .+.++++|.++ ++.+|+||..|+++|
T Consensus 68 ~~~~~~~~~----~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~----------------------~~~~Gvi~~~dl~~~ 121 (121)
T cd04633 68 PVSDIMTRP----VITIEPDTSVSDVASLMLENNIGGLPVVDD----------------------GKLVGIVTRTDILRY 121 (121)
T ss_pred CHHHHccCC----ceEECCCCcHHHHHHHHHHcCCCcccEEEC----------------------CEEEEEEEHHHhhcC
Confidence 788888654 889999999999999998 78888888753 357899999999875
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener |
| >TIGR01137 cysta_beta cystathionine beta-synthase | Back alignment and domain information |
|---|
Probab=99.00 E-value=3.5e-09 Score=109.27 Aligned_cols=124 Identities=16% Similarity=0.246 Sum_probs=99.4
Q ss_pred cccccchhhhhhcCCCCeEEEeCChhHHHHHHHHhhCCCceEEEEccCCCCCCCCCCCCCCCeEEEEEehhHHHHHHhhc
Q 016003 3 VSLLADEVSDLCLGKPALRALSISAAIADALSALKNSDESFISVWDCNCCSNHRKLGDACECQCVGKVCMVDVICYLCKD 82 (397)
Q Consensus 3 ~~~~~~~v~dl~~~k~~li~v~~~~tv~~Al~~L~~~~I~s~PV~d~~~~~~~~~~~~~~~~~~vGiv~~~Dil~~l~~~ 82 (397)
++|...+++++| .++++++++++|+.+|++.|.++++..+||+|. +++++|+|+..|+++.+.+.
T Consensus 330 ~~l~~~~v~~im--~~~~~~v~~~~tl~ea~~~m~~~~~~~~~Vvd~-------------~~~~~Givt~~dl~~~~~~~ 394 (454)
T TIGR01137 330 DVLKNATVKDLH--LPAPVTVHPTETVGDAIEILREYGFDQLPVVTE-------------AGKVLGSVTLRELLSALFAG 394 (454)
T ss_pred HHhccCCHHHhC--cCCCeEECCCCcHHHHHHHHHHcCCCEEEEEcC-------------CCeEEEEEEHHHHHHHHhcc
Confidence 357788999999 467899999999999999999999999999996 36899999999999977642
Q ss_pred CCCCChhhhhcCChhhhccCCCCCceEEeCCCCCHHHHHHHHhcCCceEEEeccCcchhhhhhhcccccccccCCCCcee
Q 016003 83 SNSLSPSLALKQPVSVLLPQLLPPLVMHVEPSCSLLEAMDLMLGGAQNLVVPIKNRLSIKRKQQQKLSSSSLTNHNGREF 162 (397)
Q Consensus 83 ~~l~~~~~~~~~~V~~lm~~~~~~~~~~V~~~~sL~~al~~m~~g~~r~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (397)
.. ..+.++.++|... +.++.+++++.++++.|.+. +.+|+.++ ++.+
T Consensus 395 ~~------~~~~~v~~im~~~----~~~v~~~~~l~~a~~~~~~~--~~~vV~~~---------------------g~li 441 (454)
T TIGR01137 395 KA------NPDDAVSKVMSKK----FIQIGEGEKLSDLSKFLEKN--SSAIVTEE---------------------GKPI 441 (454)
T ss_pred CC------CcCCCHHHhcCCC----CeEECCcCcHHHHHHHHHHC--CeeEEEEC---------------------CEEE
Confidence 11 1235799999644 78999999999999999742 23443321 3578
Q ss_pred eeecHHHHHHHH
Q 016003 163 CWLTQEDIIRFI 174 (397)
Q Consensus 163 ~IITq~DIi~~l 174 (397)
|+||..||+++|
T Consensus 442 Gvvt~~dll~~l 453 (454)
T TIGR01137 442 GVVTKIDLLSFL 453 (454)
T ss_pred EEEEHHHHHHhh
Confidence 999999999886
|
Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven. |
| >cd04637 CBS_pair_24 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=99.00 E-value=6.5e-09 Score=86.64 Aligned_cols=116 Identities=15% Similarity=0.204 Sum_probs=91.4
Q ss_pred CeEEEeCChhHHHHHHHHhhCCCceEEEEccCCCCCCCCCCCCCCCeEEEEEehhHHHHHHhhcCCCCCh--h--hhhcC
Q 016003 19 ALRALSISAAIADALSALKNSDESFISVWDCNCCSNHRKLGDACECQCVGKVCMVDVICYLCKDSNSLSP--S--LALKQ 94 (397)
Q Consensus 19 ~li~v~~~~tv~~Al~~L~~~~I~s~PV~d~~~~~~~~~~~~~~~~~~vGiv~~~Dil~~l~~~~~l~~~--~--~~~~~ 94 (397)
+++++++++++.+|++.|.++++..+||+|. ++++|+++..|+.+.+.......+. . .....
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~--------------~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 67 (122)
T cd04637 2 RVVTVEMDDRLEEVREIFEKHKFHHLLVVED--------------NELVGVISDRDYLKAISPFLGTAGETEKDLATLNR 67 (122)
T ss_pred CceEeCCCCCHHHHHHHHHhCCCCEEEEEeC--------------CeEEEEEEHHHHHHHHHHHhccccchHHHHHHHHh
Confidence 5688999999999999999999999999994 4899999999999876531100000 0 12345
Q ss_pred ChhhhccCCCCCceEEeCCCCCHHHHHHHHh-cCCceEEEeccCcchhhhhhhcccccccccCCCCceeeeecHHHHHHH
Q 016003 95 PVSVLLPQLLPPLVMHVEPSCSLLEAMDLML-GGAQNLVVPIKNRLSIKRKQQQKLSSSSLTNHNGREFCWLTQEDIIRF 173 (397)
Q Consensus 95 ~V~~lm~~~~~~~~~~V~~~~sL~~al~~m~-~g~~r~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IITq~DIi~~ 173 (397)
++.++|... ++.+.+++++.++++.|. ++..+++|.+++ +..+|++|..|+++|
T Consensus 68 ~~~~~~~~~----~~~v~~~~~l~~~~~~~~~~~~~~~~vv~~~---------------------~~~~Gvit~~dll~~ 122 (122)
T cd04637 68 RAHQIMTRD----PITVSPDTPVDEASKLLLENSISCLPVVDEN---------------------GQLIGIITWKDLLKY 122 (122)
T ss_pred HHHHhhcCC----CeeeCCCCcHHHHHHHHHHcCCCeEeEECCC---------------------CCEEEEEEHHHhhhC
Confidence 788888654 899999999999999998 688888887432 357899999999875
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener |
| >cd04592 CBS_pair_EriC_assoc_euk This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes | Back alignment and domain information |
|---|
Probab=98.99 E-value=3.2e-09 Score=91.49 Aligned_cols=118 Identities=19% Similarity=0.167 Sum_probs=75.7
Q ss_pred CeEEEeCCCcHHHHHHHHHhcCCCCCEEEEEcCCCcEEEeeccCcccCcchhHHHHHhhcChhhhhhhhccCCCCchhHH
Q 016003 198 DVVAVDYHSPASLALEAISRSLFDQTSVAVVDSDGFLIGEISPSTLGCCDETVAAAITTLSAGDLMAYIDCGGPPEDLVR 277 (397)
Q Consensus 198 ~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~is~~dl~~~~~~~~~~~~~ls~~Dl~~~~~~~~~~~~l~~ 277 (397)
+++++.+++++.+|++.|...++ +++||+|++|+++|++ +..|++.+........
T Consensus 2 ~~~~v~~~~~l~ea~~~m~~~~~--~~~~VvD~~g~l~Giv-------------------t~~Dl~~~~~~~~~~~---- 56 (133)
T cd04592 2 KYIKVSPTTTLKEALNLMLDEKQ--SCVLVVDSDDFLEGIL-------------------TLGDIQRFLFTNKTTR---- 56 (133)
T ss_pred CceEECCCCCHHHHHHHHHHcCC--CEEEEECCCCeEEEEE-------------------EHHHHHHHHhhccccc----
Confidence 57899999999999999999988 9999999999999995 4566554321000000
Q ss_pred HHHHHhhhcchhhhhhhhccccCCCCCCCCCCCCCccchhhhccccCCCccccccchhhhhcCCccEEeCCCCcHHHHHH
Q 016003 278 VVKERLKDKGLEGMLEHFDMSSSLMPYLSTSSSSDEESTATSKLTRSGKHSRSMSYSARMVRRAEAIVCHPTSSLMAVMI 357 (397)
Q Consensus 278 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~~~~sl~~v~~ 357 (397)
..... +.+... ... ..++ ... ....+.|..+++++++++++.+|++
T Consensus 57 --------~~~~~--~~~~~~-------------~~~-v~~i---~~~-------~~~~~~~~~~~~~v~~~~~l~ea~~ 102 (133)
T cd04592 57 --------VQPED--ETKQTN-------------TCL-VSSV---CTK-------GISYGGQECGLWTCTPDTDLTTAKK 102 (133)
T ss_pred --------cccch--hhcccc-------------ccc-HHHH---hhh-------hhhhcccCCCCEEECCCCCHHHHHH
Confidence 00000 000000 000 0000 000 0000124578999999999999999
Q ss_pred HHHHcCCcEEEEEcCCC
Q 016003 358 QAIAHRVTYVWVIEDDC 374 (397)
Q Consensus 358 ~m~~~~i~rl~VVd~~~ 374 (397)
.|.+++++++||+|+++
T Consensus 103 ~m~~~~~~~lPVvd~~~ 119 (133)
T cd04592 103 LMEAKGVKQLPVVKRGV 119 (133)
T ss_pred HHHHcCCCcCCEecCCc
Confidence 99999999999999753
|
These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually |
| >cd04604 CBS_pair_KpsF_GutQ_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with KpsF/GutQ domains in the API [A5P (D-arabinose 5-phosphate) isomerase] protein | Back alignment and domain information |
|---|
Probab=98.98 E-value=6.8e-09 Score=85.09 Aligned_cols=111 Identities=26% Similarity=0.274 Sum_probs=90.5
Q ss_pred CeEEEeCChhHHHHHHHHhhCCCceEEEEccCCCCCCCCCCCCCCCeEEEEEehhHHHHHHhhcCCCCChhhhhcCChhh
Q 016003 19 ALRALSISAAIADALSALKNSDESFISVWDCNCCSNHRKLGDACECQCVGKVCMVDVICYLCKDSNSLSPSLALKQPVSV 98 (397)
Q Consensus 19 ~li~v~~~~tv~~Al~~L~~~~I~s~PV~d~~~~~~~~~~~~~~~~~~vGiv~~~Dil~~l~~~~~l~~~~~~~~~~V~~ 98 (397)
++.++++++++.++++.|.+.++..+||.|.+ ++++|+++..|+...+.+.... ...++.+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~-------------~~~~G~v~~~~i~~~~~~~~~~------~~~~v~~ 63 (114)
T cd04604 3 ALPLVSPDTSLKDALLEMSRKGLGMTAVVDED-------------GRLVGIFTDGDLRRALEKGLDI------LTLPVAD 63 (114)
T ss_pred cccccCCCCcHHHHHHHHHhcCccEEEEEcCC-------------CCEEEEechHHHHHHHhccCcc------ccCCHHH
Confidence 45678999999999999999999999999963 6899999999999887653211 1247889
Q ss_pred hccCCCCCceEEeCCCCCHHHHHHHHh-cCCceEEEeccCcchhhhhhhcccccccccCCCCceeeeecHHHHHHH
Q 016003 99 LLPQLLPPLVMHVEPSCSLLEAMDLML-GGAQNLVVPIKNRLSIKRKQQQKLSSSSLTNHNGREFCWLTQEDIIRF 173 (397)
Q Consensus 99 lm~~~~~~~~~~V~~~~sL~~al~~m~-~g~~r~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IITq~DIi~~ 173 (397)
+|... +..+.+++++.++++.|. ++.++++|...+ +..+|+||..||+++
T Consensus 64 ~~~~~----~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~---------------------~~~iG~it~~di~~~ 114 (114)
T cd04604 64 VMTRN----PKTIDPDALAAEALELMEENKITALPVVDDN---------------------GRPVGVLHIHDLLRA 114 (114)
T ss_pred hhccC----CeEECCCCcHHHHHHHHHHcCCCEEEEECCC---------------------CCEEEEEEHHHhhcC
Confidence 98654 778999999999999999 778888887532 467899999999763
|
These APIs catalyze the conversion of the pentose pathway intermediate D-ribulose 5-phosphate into A5P, a precursor of 3-deoxy-D-manno-octulosonate, which is an integral carbohydrate component of various glycolipids coating the surface of the outer membrane of Gram-negative bacteria, including lipopolysaccharide and many group 2 K-antigen capsules. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other funct |
| >cd04635 CBS_pair_22 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=98.98 E-value=6.2e-09 Score=86.64 Aligned_cols=117 Identities=15% Similarity=0.141 Sum_probs=90.5
Q ss_pred CCeEEEeCChhHHHHHHHHhhCCCceEEEEccCCCCCCCCCCCCCCCeEEEEEehhHHHHHHhhcCCCCCh---hhhhcC
Q 016003 18 PALRALSISAAIADALSALKNSDESFISVWDCNCCSNHRKLGDACECQCVGKVCMVDVICYLCKDSNSLSP---SLALKQ 94 (397)
Q Consensus 18 ~~li~v~~~~tv~~Al~~L~~~~I~s~PV~d~~~~~~~~~~~~~~~~~~vGiv~~~Dil~~l~~~~~l~~~---~~~~~~ 94 (397)
++++++++++++.+|++.|.++++..+||+|. .++++|+++..|++..........+. ......
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~-------------~~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~ 67 (122)
T cd04635 1 REPVTCTPDDPVSKVWDLMLESGFTGLPVVQK-------------AGELIGIITRRDIIRAGSVRTSVEDQQRTQTKASP 67 (122)
T ss_pred CCCEEeCCCCcHHHHHHHHHHcCCCcccEECC-------------CCcEEEEEEcHHHHhhccccccccchhhhhhhccC
Confidence 35789999999999999999999999999986 36899999999998753211000000 001345
Q ss_pred ChhhhccCCCCCceEEeCCCCCHHHHHHHHh-cCCceEEEeccCcchhhhhhhcccccccccCCCCceeeeecHHHHHH
Q 016003 95 PVSVLLPQLLPPLVMHVEPSCSLLEAMDLML-GGAQNLVVPIKNRLSIKRKQQQKLSSSSLTNHNGREFCWLTQEDIIR 172 (397)
Q Consensus 95 ~V~~lm~~~~~~~~~~V~~~~sL~~al~~m~-~g~~r~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IITq~DIi~ 172 (397)
++.++|... +..+.+++++.++++.|. .+.++++|..++ +..+|+||+.|+++
T Consensus 68 ~~~~~~~~~----~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~~---------------------g~~~Gvit~~dl~~ 121 (122)
T cd04635 68 TVEKIMSTP----VYSVTPDDSIATAVELMLEHDIGRLPVVNEK---------------------DQLVGIVDRHDVLK 121 (122)
T ss_pred cHHHHhcCC----CeeECCCCCHHHHHHHHHHcCCCeeeEEcCC---------------------CcEEEEEEhHHhhc
Confidence 688888544 899999999999999999 788999887532 35789999999975
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener |
| >cd04612 CBS_pair_SpoIVFB_EriC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC | Back alignment and domain information |
|---|
Probab=98.97 E-value=1.1e-08 Score=83.40 Aligned_cols=109 Identities=17% Similarity=0.222 Sum_probs=88.9
Q ss_pred CCeEEEeCChhHHHHHHHHhhCCCceEEEEccCCCCCCCCCCCCCCCeEEEEEehhHHHHHHhhcCCCCChhhhhcCChh
Q 016003 18 PALRALSISAAIADALSALKNSDESFISVWDCNCCSNHRKLGDACECQCVGKVCMVDVICYLCKDSNSLSPSLALKQPVS 97 (397)
Q Consensus 18 ~~li~v~~~~tv~~Al~~L~~~~I~s~PV~d~~~~~~~~~~~~~~~~~~vGiv~~~Dil~~l~~~~~l~~~~~~~~~~V~ 97 (397)
|+++.+++++++.+|++.|.++++..+||.|. ++++|+++..|+........ . ...++.
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--------------~~~~G~v~~~dl~~~~~~~~-~------~~~~~~ 59 (111)
T cd04612 1 PDVVTVPVDLTVDEVLALMFGERHRGYPVVDD--------------GRLVGIVTLADIRRVPAEGR-E------ATVLVG 59 (111)
T ss_pred CCCEEeCCCCcHHHHHHHHHHcCCCcceEeeC--------------CeEEEEEEHHHHHHHHhcCc-c------cccCHH
Confidence 46788999999999999999999999999995 48999999999987654311 0 014577
Q ss_pred hhccCCCCCceEEeCCCCCHHHHHHHHh-cCCceEEEeccCcchhhhhhhcccccccccCCCCceeeeecHHHHHH
Q 016003 98 VLLPQLLPPLVMHVEPSCSLLEAMDLML-GGAQNLVVPIKNRLSIKRKQQQKLSSSSLTNHNGREFCWLTQEDIIR 172 (397)
Q Consensus 98 ~lm~~~~~~~~~~V~~~~sL~~al~~m~-~g~~r~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IITq~DIi~ 172 (397)
++|... +..+.+++++.++++.|. ++.+.++|.++ ++...|+||..||++
T Consensus 60 ~~~~~~----~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~---------------------~~~~~G~it~~di~~ 110 (111)
T cd04612 60 DVMTRD----PVTASPDETLRDALKRMAERDIGRLPVVDD---------------------SGRLVGIVSRSDLLR 110 (111)
T ss_pred HhccCC----CeEECCCCCHHHHHHHHHhCCCCeeeEEcC---------------------CCCEEEEEEHHHhhh
Confidence 788654 889999999999999999 68888888753 146789999999976
|
SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase an |
| >cd04622 CBS_pair_9 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=98.96 E-value=1.4e-08 Score=83.21 Aligned_cols=111 Identities=20% Similarity=0.191 Sum_probs=88.0
Q ss_pred CCeEEEeCChhHHHHHHHHhhCCCceEEEEccCCCCCCCCCCCCCCCeEEEEEehhHHHHHHhhcCCCCChhhhhcCChh
Q 016003 18 PALRALSISAAIADALSALKNSDESFISVWDCNCCSNHRKLGDACECQCVGKVCMVDVICYLCKDSNSLSPSLALKQPVS 97 (397)
Q Consensus 18 ~~li~v~~~~tv~~Al~~L~~~~I~s~PV~d~~~~~~~~~~~~~~~~~~vGiv~~~Dil~~l~~~~~l~~~~~~~~~~V~ 97 (397)
|+++++++++++.+|++.|.+++...+||.+. ++++|+++..|++..+..... .....++.
T Consensus 1 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~~--------------~~~~G~i~~~~l~~~~~~~~~-----~~~~~~~~ 61 (113)
T cd04622 1 RDVVTVSPDDTIREAARLMREHDVGALPVCEN--------------DRLVGIVTDRDIVVRAVAEGR-----DPDTTTVG 61 (113)
T ss_pred CCCEEECCCCcHHHHHHHHHHcCCCEEEEeeC--------------CEEEEEEEhHHHHHHHhhccC-----CcccCCHH
Confidence 46789999999999999999999999999995 589999999999743322110 11123488
Q ss_pred hhccCCCCCceEEeCCCCCHHHHHHHHh-cCCceEEEeccCcchhhhhhhcccccccccCCCCceeeeecHHHHHH
Q 016003 98 VLLPQLLPPLVMHVEPSCSLLEAMDLML-GGAQNLVVPIKNRLSIKRKQQQKLSSSSLTNHNGREFCWLTQEDIIR 172 (397)
Q Consensus 98 ~lm~~~~~~~~~~V~~~~sL~~al~~m~-~g~~r~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IITq~DIi~ 172 (397)
++|... +.++.+++++.++++.|. .+.++++|.++. ++.+|+||..|+++
T Consensus 62 ~~~~~~----~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~---------------------~~~~G~it~~di~~ 112 (113)
T cd04622 62 DVMTRG----VVTVTEDDDVDEAARLMREHQVRRLPVVDDD---------------------GRLVGIVSLGDLAR 112 (113)
T ss_pred HhccCC----ccEECCCCCHHHHHHHHHHcCCCeeeEECCC---------------------CcEEEEEEHHHhhc
Confidence 998654 788999999999999998 788888886431 45789999999975
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera |
| >cd04802 CBS_pair_3 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=98.96 E-value=1.5e-08 Score=82.99 Aligned_cols=110 Identities=19% Similarity=0.237 Sum_probs=89.4
Q ss_pred CCeEEEeCChhHHHHHHHHhhCCCceEEEEccCCCCCCCCCCCCCCCeEEEEEehhHHHHHHhhcCCCCChhhhhcCChh
Q 016003 18 PALRALSISAAIADALSALKNSDESFISVWDCNCCSNHRKLGDACECQCVGKVCMVDVICYLCKDSNSLSPSLALKQPVS 97 (397)
Q Consensus 18 ~~li~v~~~~tv~~Al~~L~~~~I~s~PV~d~~~~~~~~~~~~~~~~~~vGiv~~~Dil~~l~~~~~l~~~~~~~~~~V~ 97 (397)
++++++++++++.+|++.|.+++...+||++. ++++|+++..|++.++..... ...+.++.
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--------------~~~~G~v~~~dl~~~~~~~~~-----~~~~~~~~ 61 (112)
T cd04802 1 KNVITVDPDTTVYEAANIMTENNIGRLIVVDN--------------EKPVGIITERDLVKKVVSRNL-----KPREVPVG 61 (112)
T ss_pred CCcEEECCCCCHHHHHHHHHHCCCCEEEEEEC--------------CEEEEEEEHHHHHHHHhhccC-----CcccCCHH
Confidence 45788999999999999999999999999995 489999999999997754211 11245788
Q ss_pred hhccCCCCCceEEeCCCCCHHHHHHHHh-cCCceEEEeccCcchhhhhhhcccccccccCCCCceeeeecHHHHHH
Q 016003 98 VLLPQLLPPLVMHVEPSCSLLEAMDLML-GGAQNLVVPIKNRLSIKRKQQQKLSSSSLTNHNGREFCWLTQEDIIR 172 (397)
Q Consensus 98 ~lm~~~~~~~~~~V~~~~sL~~al~~m~-~g~~r~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IITq~DIi~ 172 (397)
++|... +..+.+++++.++++.|. .+.+.++|++++ +.+|+||..|+++
T Consensus 62 ~~~~~~----~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~----------------------~~~Gvi~~~di~~ 111 (112)
T cd04802 62 EVMSTP----LITIDPNASLNEAAKLMAKHGIKRLPVVDDD----------------------ELVGIVTTTDIVM 111 (112)
T ss_pred HhcCCC----cEEECCCCCHHHHHHHHHHcCCCeeEEeeCC----------------------EEEEEEEhhhhhc
Confidence 888644 888999999999999999 788888887531 4678999999874
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera |
| >PRK07107 inosine 5-monophosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=98.94 E-value=7.6e-09 Score=107.69 Aligned_cols=123 Identities=18% Similarity=0.186 Sum_probs=98.0
Q ss_pred hhhhhhcCC-CCeEEEeCChhHHHHHHHHhhCCCceEEEEccCCCCCCCCCCCCCCCeEEEEEehhHHHHHHhhcCCCCC
Q 016003 9 EVSDLCLGK-PALRALSISAAIADALSALKNSDESFISVWDCNCCSNHRKLGDACECQCVGKVCMVDVICYLCKDSNSLS 87 (397)
Q Consensus 9 ~v~dl~~~k-~~li~v~~~~tv~~Al~~L~~~~I~s~PV~d~~~~~~~~~~~~~~~~~~vGiv~~~Dil~~l~~~~~l~~ 87 (397)
+|.+++.+. ...+++++++|+.+|++.|.++++..+||+|... .+++++|+||..||... .
T Consensus 95 kVk~~~~g~i~~~~tV~pd~tl~eAl~~m~~~~~~~vpVVD~~~----------~~gkLvGIVT~~DLr~~--~------ 156 (502)
T PRK07107 95 RVKNYKAGFVVSDSNLTPDNTLADVLDLKEKTGHSTVAVTEDGT----------AHGKLLGIVTSRDYRIS--R------ 156 (502)
T ss_pred HHHHHhcCCcCCCCEeCCCCcHHHHHHHHHhcCCCeEEEEeCCC----------cCCEEEEEEEcHHhhcc--c------
Confidence 477777532 2346899999999999999999999999999521 13699999999999532 1
Q ss_pred hhhhhcCChhhhccCCCCCceEEeCCCCCHHHHHHHHh-cCCceEEEeccCcchhhhhhhcccccccccCCCCceeeeec
Q 016003 88 PSLALKQPVSVLLPQLLPPLVMHVEPSCSLLEAMDLML-GGAQNLVVPIKNRLSIKRKQQQKLSSSSLTNHNGREFCWLT 166 (397)
Q Consensus 88 ~~~~~~~~V~~lm~~~~~~~~~~V~~~~sL~~al~~m~-~g~~r~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IIT 166 (397)
...+.+|+++|... .+++++.+++++.+|+++|. ++++++||++++ +.++|+||
T Consensus 157 --~~~~~~V~dIMt~~--~~~itv~~d~~l~eAl~lM~e~~i~~LPVVD~~---------------------g~LvGIIT 211 (502)
T PRK07107 157 --MSLDTKVKDFMTPF--EKLVTANEGTTLKEANDIIWDHKLNTLPIVDKN---------------------GNLVYLVF 211 (502)
T ss_pred --cCCCCCHHHHhCCC--CCeEEECCCCcHHHHHHHHHHcCCCEEEEEcCC---------------------CeEEEEEE
Confidence 13457899999642 34889999999999999999 899999998632 35789999
Q ss_pred HHHHHHHH
Q 016003 167 QEDIIRFI 174 (397)
Q Consensus 167 q~DIi~~l 174 (397)
..|+++..
T Consensus 212 ~~Dilk~~ 219 (502)
T PRK07107 212 RKDYDSHK 219 (502)
T ss_pred hHHHHhcc
Confidence 99999864
|
|
| >cd04640 CBS_pair_27 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=98.92 E-value=4.8e-09 Score=88.48 Aligned_cols=114 Identities=14% Similarity=0.170 Sum_probs=86.1
Q ss_pred CeEEEeCChhHHHHHHHHhhCCCceEEEEccCCCCCCCCCCCCCCCeEEEEEehhHHHHH-----HhhcCCCCChhhhhc
Q 016003 19 ALRALSISAAIADALSALKNSDESFISVWDCNCCSNHRKLGDACECQCVGKVCMVDVICY-----LCKDSNSLSPSLALK 93 (397)
Q Consensus 19 ~li~v~~~~tv~~Al~~L~~~~I~s~PV~d~~~~~~~~~~~~~~~~~~vGiv~~~Dil~~-----l~~~~~l~~~~~~~~ 93 (397)
+.++++.++++.+|++.|.++++..+||.|. +++++|+++..|+... +.+.. ....+
T Consensus 2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~-------------~~~~~Giv~~~dl~~~~~~~~~~~~~-----~~~~~ 63 (126)
T cd04640 2 KPIVIPADTSIDEALELMIKHGVRLLLVVDS-------------DDNFIGVITAVDLLGEEPIKRIQEGG-----ISRSE 63 (126)
T ss_pred CCeEECCCCcHHHHHHHHHHcCCcEEEEEcC-------------CCcEEEEEEHHHHhhChhhHHHHHcC-----CCchh
Confidence 4678999999999999999999999999996 3689999999999862 22210 01234
Q ss_pred CChhhhccCCCCCceEEe----CCCCCHHHHHHHHh-cCCceEEEeccCcchhhhhhhcccccccccCCCCceeeeecHH
Q 016003 94 QPVSVLLPQLLPPLVMHV----EPSCSLLEAMDLML-GGAQNLVVPIKNRLSIKRKQQQKLSSSSLTNHNGREFCWLTQE 168 (397)
Q Consensus 94 ~~V~~lm~~~~~~~~~~V----~~~~sL~~al~~m~-~g~~r~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IITq~ 168 (397)
.+++++|... ...+.+ .+++++.++++.|. ++.++++|++.+ ++.++|+||++
T Consensus 64 ~~v~~im~~~--~~~~~~~~~~~~~~~l~~~l~~m~~~~~~~lpVvd~~--------------------~~~~~G~it~~ 121 (126)
T cd04640 64 LTVADVMTPK--EDLKALDLEELENASVGDVVETLKASGRQHALVVDRE--------------------HHQIRGIISTS 121 (126)
T ss_pred eEHHHhcCch--hhhccccHHHhccCcHHHHHHHHHHCCCceEEEEECC--------------------CCEEEEEEeHH
Confidence 6789999543 111233 36899999999999 789999987632 13578999999
Q ss_pred HHHH
Q 016003 169 DIIR 172 (397)
Q Consensus 169 DIi~ 172 (397)
||++
T Consensus 122 di~~ 125 (126)
T cd04640 122 DIAR 125 (126)
T ss_pred HHhh
Confidence 9975
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener |
| >cd04596 CBS_pair_DRTGG_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream | Back alignment and domain information |
|---|
Probab=98.92 E-value=1.7e-08 Score=82.51 Aligned_cols=104 Identities=19% Similarity=0.229 Sum_probs=87.2
Q ss_pred CeEEEeCChhHHHHHHHHhhCCCceEEEEccCCCCCCCCCCCCCCCeEEEEEehhHHHHHHhhcCCCCChhhhhcCChhh
Q 016003 19 ALRALSISAAIADALSALKNSDESFISVWDCNCCSNHRKLGDACECQCVGKVCMVDVICYLCKDSNSLSPSLALKQPVSV 98 (397)
Q Consensus 19 ~li~v~~~~tv~~Al~~L~~~~I~s~PV~d~~~~~~~~~~~~~~~~~~vGiv~~~Dil~~l~~~~~l~~~~~~~~~~V~~ 98 (397)
++.++++++++.+|++.|.+++...+||+|. .++++|+++..|++... .+.++++
T Consensus 3 ~~~~~~~~~~~~~a~~~~~~~~~~~~~V~d~-------------~~~~~G~v~~~~l~~~~------------~~~~v~~ 57 (108)
T cd04596 3 DTGYLTTTDTVKDWHELNKETGHSRFPVVDE-------------KNKVVGIVTSKDVAGKD------------PDTTIEK 57 (108)
T ss_pred ccEEeCCCCCHHHHHHHHHHcCCCceeEECC-------------CCeEEEEecHHHHhccc------------ccccHHH
Confidence 5788999999999999999999999999996 36899999999997421 1357889
Q ss_pred hccCCCCCceEEeCCCCCHHHHHHHHh-cCCceEEEeccCcchhhhhhhcccccccccCCCCceeeeecHHHHHH
Q 016003 99 LLPQLLPPLVMHVEPSCSLLEAMDLML-GGAQNLVVPIKNRLSIKRKQQQKLSSSSLTNHNGREFCWLTQEDIIR 172 (397)
Q Consensus 99 lm~~~~~~~~~~V~~~~sL~~al~~m~-~g~~r~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IITq~DIi~ 172 (397)
+|... +..+.+++++.++++.|. .+.+.++|...+ ++.+|+||..|+++
T Consensus 58 ~~~~~----~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~---------------------~~~~G~it~~di~~ 107 (108)
T cd04596 58 VMTKN----PITVNPKTSVASVAHMMIWEGIEMLPVVDDN---------------------KKLLGIISRQDVLK 107 (108)
T ss_pred HhcCC----CeEECCCCCHHHHHHHHHHcCCCeeeEEcCC---------------------CCEEEEEEHHHhhc
Confidence 98644 789999999999999998 788888887522 46789999999875
|
The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. |
| >cd04602 CBS_pair_IMPDH_2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein | Back alignment and domain information |
|---|
Probab=98.91 E-value=2e-08 Score=82.92 Aligned_cols=108 Identities=19% Similarity=0.184 Sum_probs=84.6
Q ss_pred CeEEEeCChhHHHHHHHHhhCCCceEEEEccCCCCCCCCCCCCCCCeEEEEEehhHHHHHHhhcCCCCChhhhhcCChhh
Q 016003 19 ALRALSISAAIADALSALKNSDESFISVWDCNCCSNHRKLGDACECQCVGKVCMVDVICYLCKDSNSLSPSLALKQPVSV 98 (397)
Q Consensus 19 ~li~v~~~~tv~~Al~~L~~~~I~s~PV~d~~~~~~~~~~~~~~~~~~vGiv~~~Dil~~l~~~~~l~~~~~~~~~~V~~ 98 (397)
+++++++++++.+|++.|.++++..+||+|.... +++++|+++..|++... . .+.++++
T Consensus 3 ~~~~i~~~~~~~~~~~~~~~~~~~~~~V~d~~~~----------~~~~~G~v~~~dl~~~~-~----------~~~~v~~ 61 (114)
T cd04602 3 DPSVLSPDHTVADVLEIKEKKGFSGIPVTEDGKS----------GGKLLGIVTSRDIDFLT-D----------SETPLSE 61 (114)
T ss_pred CCeEcCCCCCHHHHHHHHHHcCCCceEEeeCCCc----------CCEEEEEEEhHHhhhhh-c----------cCCCHHH
Confidence 4678899999999999999999999999995210 26899999999987421 1 1356889
Q ss_pred hccCCCCCceEEe--CCCCCHHHHHHHHh-cCCceEEEeccCcchhhhhhhcccccccccCCCCceeeeecHHHHHH
Q 016003 99 LLPQLLPPLVMHV--EPSCSLLEAMDLML-GGAQNLVVPIKNRLSIKRKQQQKLSSSSLTNHNGREFCWLTQEDIIR 172 (397)
Q Consensus 99 lm~~~~~~~~~~V--~~~~sL~~al~~m~-~g~~r~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IITq~DIi~ 172 (397)
+|... ..++ .+++++.++++.|. ++.++++|++++ +..+|+||+.|+++
T Consensus 62 ~~~~~----~~~~~~~~~~~l~~~l~~~~~~~~~~~pVv~~~---------------------~~~~Gvit~~di~~ 113 (114)
T cd04602 62 VMTPR----EVLVVAPTGITLEEANEILRESKKGKLPIVNDD---------------------GELVALVTRSDLKK 113 (114)
T ss_pred hcCCC----ceEEECCCCCCHHHHHHHHHhcCCCceeEECCC---------------------CeEEEEEEHHHhhc
Confidence 98543 4455 45999999999998 789999987532 35789999999875
|
IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentos |
| >cd04599 CBS_pair_GGDEF_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain | Back alignment and domain information |
|---|
Probab=98.91 E-value=2e-08 Score=81.17 Aligned_cols=101 Identities=20% Similarity=0.149 Sum_probs=84.8
Q ss_pred CeEEEeCChhHHHHHHHHhhCCCceEEEEccCCCCCCCCCCCCCCCeEEEEEehhHHHHHHhhcCCCCChhhhhcCChhh
Q 016003 19 ALRALSISAAIADALSALKNSDESFISVWDCNCCSNHRKLGDACECQCVGKVCMVDVICYLCKDSNSLSPSLALKQPVSV 98 (397)
Q Consensus 19 ~li~v~~~~tv~~Al~~L~~~~I~s~PV~d~~~~~~~~~~~~~~~~~~vGiv~~~Dil~~l~~~~~l~~~~~~~~~~V~~ 98 (397)
+++++++++++.+|++.|.++++..+||+|. ++++|+++..|+.... .+.++.+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~--------------~~~~Giv~~~~l~~~~------------~~~~~~~ 55 (105)
T cd04599 2 DPITIDPLDSVGRAARLMEKHRIGGLPVVED--------------GKLVGIITSRDVRRAH------------PNRLVAD 55 (105)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCEEEEEEC--------------CEEEEEEehHHhhccc------------ccCCHHH
Confidence 5678999999999999999999999999983 5899999999998631 1246788
Q ss_pred hccCCCCCceEEeCCCCCHHHHHHHHh-cCCceEEEeccCcchhhhhhhcccccccccCCCCceeeeecHHHHH
Q 016003 99 LLPQLLPPLVMHVEPSCSLLEAMDLML-GGAQNLVVPIKNRLSIKRKQQQKLSSSSLTNHNGREFCWLTQEDII 171 (397)
Q Consensus 99 lm~~~~~~~~~~V~~~~sL~~al~~m~-~g~~r~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IITq~DIi 171 (397)
+|... ++.+.+++++.++++.|. ++..+++|.++ +..+|+||+.|++
T Consensus 56 ~~~~~----~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~----------------------~~~~G~it~~~l~ 103 (105)
T cd04599 56 AMTRE----VVTISPEASLLEAKRLMEEKKIERLPVLRE----------------------RKLVGIITKGTIA 103 (105)
T ss_pred HccCC----CEEECCCCCHHHHHHHHHHcCCCEeeEEEC----------------------CEEEEEEEHHHhc
Confidence 88544 889999999999999998 78888888753 3568899999986
|
The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. |
| >cd04601 CBS_pair_IMPDH This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein | Back alignment and domain information |
|---|
Probab=98.90 E-value=1.3e-08 Score=82.79 Aligned_cols=106 Identities=25% Similarity=0.225 Sum_probs=84.8
Q ss_pred CCeEEEeCChhHHHHHHHHhhCCCceEEEEccCCCCCCCCCCCCCCCeEEEEEehhHHHHHHhhcCCCCChhhhhcCChh
Q 016003 18 PALRALSISAAIADALSALKNSDESFISVWDCNCCSNHRKLGDACECQCVGKVCMVDVICYLCKDSNSLSPSLALKQPVS 97 (397)
Q Consensus 18 ~~li~v~~~~tv~~Al~~L~~~~I~s~PV~d~~~~~~~~~~~~~~~~~~vGiv~~~Dil~~l~~~~~l~~~~~~~~~~V~ 97 (397)
++.++++.++++.++++.|.+++..++||.|. +++++|+++..|+.... ..+.++.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~-------------~~~~~G~v~~~~l~~~~-----------~~~~~v~ 57 (110)
T cd04601 2 RDPITVSPDATVAEALELMAEYGISGLPVVDD-------------DGKLVGIVTNRDLRFET-----------DLDKPVS 57 (110)
T ss_pred CCCeEeCCCCcHHHHHHHHHHcCCceEEEEcC-------------CCEEEEEEEhhHeeecc-----------cCCCCHH
Confidence 35688999999999999999999999999996 36899999999986321 1245788
Q ss_pred hhccCCCCCceEEeCC-CCCHHHHHHHHh-cCCceEEEeccCcchhhhhhhcccccccccCCCCceeeeecHHHHHH
Q 016003 98 VLLPQLLPPLVMHVEP-SCSLLEAMDLML-GGAQNLVVPIKNRLSIKRKQQQKLSSSSLTNHNGREFCWLTQEDIIR 172 (397)
Q Consensus 98 ~lm~~~~~~~~~~V~~-~~sL~~al~~m~-~g~~r~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IITq~DIi~ 172 (397)
++|... +..+.+ ++++.++++.|. .+.++++|..++ +..+|+||..|+++
T Consensus 58 ~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~~~~~Vv~~~---------------------~~~~Gvi~~~dil~ 109 (110)
T cd04601 58 EVMTPE----NLLTTVEGTSLEEALELLHEHKIEKLPVVDDE---------------------GKLKGLITVKDIEK 109 (110)
T ss_pred HhcccC----ceEEecCCCCHHHHHHHHHHhCCCeeeEEcCC---------------------CCEEEEEEhhhhhc
Confidence 888543 455566 999999999999 688888887532 35789999999975
|
IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentosa. |
| >PLN02274 inosine-5'-monophosphate dehydrogenase | Back alignment and domain information |
|---|
Probab=98.90 E-value=1.7e-08 Score=105.21 Aligned_cols=114 Identities=15% Similarity=0.040 Sum_probs=94.4
Q ss_pred CCeEEEeCChhHHHHHHHHhhCCCceEEEEccCCCCCCCCCCCCCCCeEEEEEehhHHHHHHhhcCCCCChhhhhcCChh
Q 016003 18 PALRALSISAAIADALSALKNSDESFISVWDCNCCSNHRKLGDACECQCVGKVCMVDVICYLCKDSNSLSPSLALKQPVS 97 (397)
Q Consensus 18 ~~li~v~~~~tv~~Al~~L~~~~I~s~PV~d~~~~~~~~~~~~~~~~~~vGiv~~~Dil~~l~~~~~l~~~~~~~~~~V~ 97 (397)
++++++++++|+.+|+++|.++++..+||+|... ..++++|+|+..|+... . ..+.+|+
T Consensus 108 ~dpvtV~pd~tV~dA~~lm~~~~~~~lpVvD~~~----------~~GklvGIVT~~DL~~v-~----------~~~~~V~ 166 (505)
T PLN02274 108 SDPVVKSPSSTISSLDELKASRGFSSVCVTETGT----------MGSKLLGYVTKRDWDFV-N----------DRETKLS 166 (505)
T ss_pred CCCeeeCCCCcHHHHHHHHHhcCCceEEEEeCCC----------cCCeEEEEEEHHHHhhc-c----------ccCCcHH
Confidence 5789999999999999999999999999998521 13689999999999532 1 1257899
Q ss_pred hhccCCCCCceEEeCCCCCHHHHHHHHh-cCCceEEEeccCcchhhhhhhcccccccccCCCCceeeeecHHHHHHHHH
Q 016003 98 VLLPQLLPPLVMHVEPSCSLLEAMDLML-GGAQNLVVPIKNRLSIKRKQQQKLSSSSLTNHNGREFCWLTQEDIIRFIL 175 (397)
Q Consensus 98 ~lm~~~~~~~~~~V~~~~sL~~al~~m~-~g~~r~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IITq~DIi~~l~ 175 (397)
++|... .+++++.+++++.+|++.|. ++.++++|++++ +.++|+||+.||++++.
T Consensus 167 eIMt~~--~~lvtv~~~~sL~eAl~~m~~~~~~~LPVVD~~---------------------g~LvGvITr~DIlk~~~ 222 (505)
T PLN02274 167 EVMTSD--DDLVTAPAGIDLEEAEAVLKDSKKGKLPLVNED---------------------GELVDLVTRTDVKRVKG 222 (505)
T ss_pred HHhccC--CCcEEECCCCCHHHHHHHHHHcCCCEEEEEcCC---------------------CeEEEEEEHHHHHHHhh
Confidence 999532 33789999999999999999 789999998632 35789999999999985
|
|
| >cd02205 CBS_pair The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=98.89 E-value=3.5e-08 Score=79.46 Aligned_cols=111 Identities=29% Similarity=0.307 Sum_probs=88.4
Q ss_pred CeEEEeCChhHHHHHHHHhhCCCceEEEEccCCCCCCCCCCCCCCCeEEEEEehhHHHHHHhhcCCCCChhhhhcCChhh
Q 016003 19 ALRALSISAAIADALSALKNSDESFISVWDCNCCSNHRKLGDACECQCVGKVCMVDVICYLCKDSNSLSPSLALKQPVSV 98 (397)
Q Consensus 19 ~li~v~~~~tv~~Al~~L~~~~I~s~PV~d~~~~~~~~~~~~~~~~~~vGiv~~~Dil~~l~~~~~l~~~~~~~~~~V~~ 98 (397)
+++++++++++.++++.|.+++...+||++.+ ++++|+++..|++.++....... ...+.+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-------------~~~~G~v~~~~l~~~~~~~~~~~------~~~~~~ 62 (113)
T cd02205 2 DVVTVSPDDTVAEALRLMLEHGISGLPVVDDD-------------GRLVGIVTERDLLRALAEGGLDP------LVTVGD 62 (113)
T ss_pred CceEecCCCCHHHHHHHHHhcCCceEEEECCC-------------CCEEEEEeHHHHHHHHHhccCCc------cccHHH
Confidence 46789999999999999999999999999963 68999999999999886521110 112566
Q ss_pred hccCCCCCceEEeCCCCCHHHHHHHHh-cCCceEEEeccCcchhhhhhhcccccccccCCCCceeeeecHHHHHHH
Q 016003 99 LLPQLLPPLVMHVEPSCSLLEAMDLML-GGAQNLVVPIKNRLSIKRKQQQKLSSSSLTNHNGREFCWLTQEDIIRF 173 (397)
Q Consensus 99 lm~~~~~~~~~~V~~~~sL~~al~~m~-~g~~r~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IITq~DIi~~ 173 (397)
+|... ++.+.++.++.+++..|. .+.+.++|.+.+ ++..|+||+.|++++
T Consensus 63 ~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~---------------------~~~~G~i~~~dl~~~ 113 (113)
T cd02205 63 VMTRD----VVTVSPDTSLEEAAELMLEHGIRRLPVVDDE---------------------GRLVGIVTRSDILRA 113 (113)
T ss_pred HhcCC----ceecCCCcCHHHHHHHHHHcCCCEEEEEcCC---------------------CcEEEEEEHHHhhcC
Confidence 77543 788999999999999998 678888887532 467889999999763
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generali |
| >cd04584 CBS_pair_ACT_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria | Back alignment and domain information |
|---|
Probab=98.87 E-value=3.7e-08 Score=81.66 Aligned_cols=115 Identities=27% Similarity=0.269 Sum_probs=89.0
Q ss_pred CeEEEeCChhHHHHHHHHhhCCCceEEEEccCCCCCCCCCCCCCCCeEEEEEehhHHHHHHhhcCCCCCh---hhhhcCC
Q 016003 19 ALRALSISAAIADALSALKNSDESFISVWDCNCCSNHRKLGDACECQCVGKVCMVDVICYLCKDSNSLSP---SLALKQP 95 (397)
Q Consensus 19 ~li~v~~~~tv~~Al~~L~~~~I~s~PV~d~~~~~~~~~~~~~~~~~~vGiv~~~Dil~~l~~~~~l~~~---~~~~~~~ 95 (397)
++.++++++++.+|++.|.+++...+||+|.+ ++++|+++..|++............ ......+
T Consensus 2 ~~~~~~~~~~l~~a~~~~~~~~~~~~~V~d~~-------------~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 68 (121)
T cd04584 2 DVVTITPTTTIAEALELMREHKIRHLPVVDEE-------------GRLVGIVTDRDLRDASPSPFTTLSEHELYLLLKMP 68 (121)
T ss_pred CCEEECCCCCHHHHHHHHHHcCCCcccEECCC-------------CcEEEEEEHHHHHHHhhhhcccchhhhhhhhcCcC
Confidence 57889999999999999999999999999963 6899999999998765421100000 0122457
Q ss_pred hhhhccCCCCCceEEeCCCCCHHHHHHHHh-cCCceEEEeccCcchhhhhhhcccccccccCCCCceeeeecHHHHHH
Q 016003 96 VSVLLPQLLPPLVMHVEPSCSLLEAMDLML-GGAQNLVVPIKNRLSIKRKQQQKLSSSSLTNHNGREFCWLTQEDIIR 172 (397)
Q Consensus 96 V~~lm~~~~~~~~~~V~~~~sL~~al~~m~-~g~~r~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IITq~DIi~ 172 (397)
+.++|... ++.+.+++++.++++.|. .+.+.++|.++ +..+|++|..||++
T Consensus 69 v~~~~~~~----~~~i~~~~~l~~~~~~~~~~~~~~~~V~~~----------------------~~~~Gvv~~~di~~ 120 (121)
T cd04584 69 VKEIMTKD----VITVHPLDTVEEAALLMREHRIGCLPVVED----------------------GRLVGIITETDLLR 120 (121)
T ss_pred HHHHhhCC----CeEECCCCcHHHHHHHHHHcCCCeEEEeeC----------------------CEEEEEEEHHHhhc
Confidence 88888654 789999999999999998 67778877642 35688999999874
|
Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The in |
| >PRK11573 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.87 E-value=8.3e-08 Score=98.03 Aligned_cols=166 Identities=14% Similarity=0.135 Sum_probs=119.1
Q ss_pred ccccchhhhhhcCCCCeEEEeCChhHHHHHHHHhhCCCceEEEEccCCCCCCCCCCCCCCCeEEEEEehhHHHHHHhhcC
Q 016003 4 SLLADEVSDLCLGKPALRALSISAAIADALSALKNSDESFISVWDCNCCSNHRKLGDACECQCVGKVCMVDVICYLCKDS 83 (397)
Q Consensus 4 ~~~~~~v~dl~~~k~~li~v~~~~tv~~Al~~L~~~~I~s~PV~d~~~~~~~~~~~~~~~~~~vGiv~~~Dil~~l~~~~ 83 (397)
-|..++|+|+|....++++++.++++.++++.+.+++.+.+||++.+ .++++|++...|++.++.+..
T Consensus 183 ~l~~~~v~eiMtPr~~i~~l~~~~~~~e~~~~~~~~~~SR~PVy~~~------------~D~IiGiv~~kDll~~~~~~~ 250 (413)
T PRK11573 183 DLEKVTVDDIMVPRNEIVGIDINDDWKSILRQLTHSPHGRIVLYRDS------------LDDAISMLRVREAYRLMTEKK 250 (413)
T ss_pred ccCCCChhhcCCccceEEEEECCCCHHHHHHHHHhCCCceEEEEcCC------------CCceEEEEEHHHHHHHhhccC
Confidence 46788999999988899999999999999999999999999999853 468999999999998654321
Q ss_pred CCCChhhhhcCChhhhccCCCCCceEEeCCCCCHHHHHHHHhcCCceEEEeccCcchhhhhhhcccccccccCCCCceee
Q 016003 84 NSLSPSLALKQPVSVLLPQLLPPLVMHVEPSCSLLEAMDLMLGGAQNLVVPIKNRLSIKRKQQQKLSSSSLTNHNGREFC 163 (397)
Q Consensus 84 ~l~~~~~~~~~~V~~lm~~~~~~~~~~V~~~~sL~~al~~m~~g~~r~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (397)
.. -...+..++ .+++.|.++.++.++++.|.++-.++.++.+. -|...|
T Consensus 251 ~~------~~~~l~~~~-----r~~~~Vpe~~~l~~lL~~~~~~~~~~AiVvDE--------------------yG~~~G 299 (413)
T PRK11573 251 EF------TKENMLRAA-----DEIYFVPEGTPLSTQLVKFQRNKKKVGLVVDE--------------------YGDIQG 299 (413)
T ss_pred cC------CHHHHHhhc-----cCCeEeCCCCcHHHHHHHHHhcCCeEEEEEec--------------------CCCeEE
Confidence 10 011233444 24788999999999999999544445443332 145678
Q ss_pred eecHHHHHHHHHhcc-CCCCCCccCCccccCCCCcCeEEEeCCCcHHHHHHHH
Q 016003 164 WLTQEDIIRFILSSI-SLFSPIPALSIDSLGIISTDVVAVDYHSPASLALEAI 215 (397)
Q Consensus 164 IITq~DIi~~l~~~~-~~l~~l~~~ti~~L~~~~~~v~tv~~~~~~~~a~~~m 215 (397)
+||.+||+.-+.... ++..+-....+.. ...+.+.+....++.|.-+.+
T Consensus 300 iVTleDilEeivGei~de~d~~~~~~i~~---~~~~~~~v~G~~~l~d~~~~l 349 (413)
T PRK11573 300 LVTVEDILEEIVGDFTTSMSPTLAEEVTP---QNDGSVIIDGTANVREINKAF 349 (413)
T ss_pred EeeHHHHHHHHhCCCCcccCcccccceEE---ecCCEEEEEeeeEHHHHHHHh
Confidence 999999999886432 1221111111221 124578899999999888876
|
|
| >TIGR00393 kpsF KpsF/GutQ family protein | Back alignment and domain information |
|---|
Probab=98.86 E-value=2.1e-08 Score=96.06 Aligned_cols=103 Identities=24% Similarity=0.173 Sum_probs=87.4
Q ss_pred chhhhhhcCCCC-eEEEeCChhHHHHHHHHhhCCCceEEEEccCCCCCCCCCCCCCCCeEEEEEehhHHHHHHhhcCCCC
Q 016003 8 DEVSDLCLGKPA-LRALSISAAIADALSALKNSDESFISVWDCNCCSNHRKLGDACECQCVGKVCMVDVICYLCKDSNSL 86 (397)
Q Consensus 8 ~~v~dl~~~k~~-li~v~~~~tv~~Al~~L~~~~I~s~PV~d~~~~~~~~~~~~~~~~~~vGiv~~~Dil~~l~~~~~l~ 86 (397)
.+|+|+|. ++ ...+++++++.+|++.|.++++..+||+|.+ ++++|+++..|+...+..+
T Consensus 155 ~~v~~im~--~~~~~~v~~~~~v~~a~~~~~~~~~~~~~Vvd~~-------------g~~~Givt~~dl~~~~~~~---- 215 (268)
T TIGR00393 155 VKVKDLMQ--TTDLPLIAPTTSFKDALLEMSEKRLGSAIVCDEN-------------NQLVGVFTDGDLRRALLGG---- 215 (268)
T ss_pred hhHHHHhC--CCCCCcCCCCCcHHHHHHHHhhcCCcEEEEEeCC-------------CCEEEEEEcHHHHHHHhcC----
Confidence 57999994 44 8899999999999999999999999999963 6899999999999876431
Q ss_pred ChhhhhcCChhhhccCCCCCceEEeCCCCCHHHHHHHHh-cCCceEEEecc
Q 016003 87 SPSLALKQPVSVLLPQLLPPLVMHVEPSCSLLEAMDLML-GGAQNLVVPIK 136 (397)
Q Consensus 87 ~~~~~~~~~V~~lm~~~~~~~~~~V~~~~sL~~al~~m~-~g~~r~~V~~~ 136 (397)
...+.+++++|... +.++.+++++.+|++.|. .+.++++|.++
T Consensus 216 ---~~~~~~v~~im~~~----~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~ 259 (268)
T TIGR00393 216 ---GSLKSEVRDFMTLG----PKTFKLDALLLEALEFLERRKITSLVVVDD 259 (268)
T ss_pred ---CcccCcHHHhCCCC----CeEECCCCcHHHHHHHHHHcCCcEEEEECC
Confidence 12357899999654 889999999999999999 78999999753
|
This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli. |
| >cd04592 CBS_pair_EriC_assoc_euk This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes | Back alignment and domain information |
|---|
Probab=98.85 E-value=2.7e-08 Score=85.71 Aligned_cols=107 Identities=18% Similarity=0.155 Sum_probs=80.4
Q ss_pred CeEEEeCChhHHHHHHHHhhCCCceEEEEccCCCCCCCCCCCCCCCeEEEEEehhHHHHHHhhcCCCCChh--h---hhc
Q 016003 19 ALRALSISAAIADALSALKNSDESFISVWDCNCCSNHRKLGDACECQCVGKVCMVDVICYLCKDSNSLSPS--L---ALK 93 (397)
Q Consensus 19 ~li~v~~~~tv~~Al~~L~~~~I~s~PV~d~~~~~~~~~~~~~~~~~~vGiv~~~Dil~~l~~~~~l~~~~--~---~~~ 93 (397)
.++++++++++.+|++.|.++++.++||+|. +++++|+++..|++.++.......... . .-.
T Consensus 2 ~~~~v~~~~~l~ea~~~m~~~~~~~~~VvD~-------------~g~l~Givt~~Dl~~~~~~~~~~~~~~~~~~~~~~~ 68 (133)
T cd04592 2 KYIKVSPTTTLKEALNLMLDEKQSCVLVVDS-------------DDFLEGILTLGDIQRFLFTNKTTRVQPEDETKQTNT 68 (133)
T ss_pred CceEECCCCCHHHHHHHHHHcCCCEEEEECC-------------CCeEEEEEEHHHHHHHHhhccccccccchhhccccc
Confidence 5789999999999999999999999999996 368999999999999886432111000 0 011
Q ss_pred CChhhhccCC-----CCCceEEeCCCCCHHHHHHHHh-cCCceEEEeccCc
Q 016003 94 QPVSVLLPQL-----LPPLVMHVEPSCSLLEAMDLML-GGAQNLVVPIKNR 138 (397)
Q Consensus 94 ~~V~~lm~~~-----~~~~~~~V~~~~sL~~al~~m~-~g~~r~~V~~~~~ 138 (397)
..+.++|... ...+++++.+++++.+|++.|. +++++++|.+++.
T Consensus 69 ~~v~~i~~~~~~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lPVvd~~~ 119 (133)
T cd04592 69 CLVSSVCTKGISYGGQECGLWTCTPDTDLTTAKKLMEAKGVKQLPVVKRGV 119 (133)
T ss_pred ccHHHHhhhhhhhcccCCCCEEECCCCCHHHHHHHHHHcCCCcCCEecCCc
Confidence 2345555311 1234889999999999999999 7999999987543
|
These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually |
| >cd04610 CBS_pair_ParBc_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a ParBc (ParB-like nuclease) domain downstream | Back alignment and domain information |
|---|
Probab=98.85 E-value=4.2e-08 Score=79.54 Aligned_cols=105 Identities=21% Similarity=0.294 Sum_probs=86.4
Q ss_pred CCeEEEeCChhHHHHHHHHhhCCCceEEEEccCCCCCCCCCCCCCCCeEEEEEehhHHHHHHhhcCCCCChhhhhcCChh
Q 016003 18 PALRALSISAAIADALSALKNSDESFISVWDCNCCSNHRKLGDACECQCVGKVCMVDVICYLCKDSNSLSPSLALKQPVS 97 (397)
Q Consensus 18 ~~li~v~~~~tv~~Al~~L~~~~I~s~PV~d~~~~~~~~~~~~~~~~~~vGiv~~~Dil~~l~~~~~l~~~~~~~~~~V~ 97 (397)
+++++++.+.++.+|++.|.+++...+||.+. ++++|+++..|++.. . ...+++
T Consensus 2 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~--------------~~~~g~v~~~~l~~~---~---------~~~~~~ 55 (107)
T cd04610 2 RDVITVSPDNTVKDVIKLIKETGHDGFPVVDN--------------GKVVGIVSARDLLGK---D---------PDETVE 55 (107)
T ss_pred CCcEEECCCCcHHHHHHHHHHcCCCeeeEeEC--------------CEEEEEEEHHHhhcc---C---------ccccHH
Confidence 46788999999999999999999999999984 489999999999852 1 124688
Q ss_pred hhccCCCCCceEEeCCCCCHHHHHHHHh-cCCceEEEeccCcchhhhhhhcccccccccCCCCceeeeecHHHHHHH
Q 016003 98 VLLPQLLPPLVMHVEPSCSLLEAMDLML-GGAQNLVVPIKNRLSIKRKQQQKLSSSSLTNHNGREFCWLTQEDIIRF 173 (397)
Q Consensus 98 ~lm~~~~~~~~~~V~~~~sL~~al~~m~-~g~~r~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IITq~DIi~~ 173 (397)
++|... ++.+.+++++.++++.|. ++.++++|..++ +..+|+|+..|++++
T Consensus 56 ~~~~~~----~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~---------------------g~~~Gvi~~~di~~~ 107 (107)
T cd04610 56 EIMSKD----LVVAVPEMDIMDAARVMFRTGISKLPVVDEN---------------------NNLVGIITNTDVIRS 107 (107)
T ss_pred HhCCCC----CeEECCCCCHHHHHHHHHHhCCCeEeEECCC---------------------CeEEEEEEHHHhhcC
Confidence 888544 788999999999999998 677888887532 457899999999863
|
CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. |
| >PF00571 CBS: CBS domain CBS domain web page | Back alignment and domain information |
|---|
Probab=98.84 E-value=9.3e-09 Score=74.74 Aligned_cols=56 Identities=23% Similarity=0.309 Sum_probs=51.4
Q ss_pred hhhhhcCCCCeEEEeCChhHHHHHHHHhhCCCceEEEEccCCCCCCCCCCCCCCCeEEEEEehhHHHHHHh
Q 016003 10 VSDLCLGKPALRALSISAAIADALSALKNSDESFISVWDCNCCSNHRKLGDACECQCVGKVCMVDVICYLC 80 (397)
Q Consensus 10 v~dl~~~k~~li~v~~~~tv~~Al~~L~~~~I~s~PV~d~~~~~~~~~~~~~~~~~~vGiv~~~Dil~~l~ 80 (397)
|+|+|. ++++++++++++.+|++.|.++++..+||+|.+ ++++|+++..||+.++.
T Consensus 1 v~~~m~--~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~d~~-------------~~~~G~is~~dl~~~l~ 56 (57)
T PF00571_consen 1 VGDIMT--PPPITVSPDDSLEEALEIMRKNGISRLPVVDED-------------GKLVGIISRSDLLKALL 56 (57)
T ss_dssp HHHHSB--SSSEEEETTSBHHHHHHHHHHHTSSEEEEESTT-------------SBEEEEEEHHHHHHHHH
T ss_pred CeECCc--CCCEEEcCcCcHHHHHHHHHHcCCcEEEEEecC-------------CEEEEEEEHHHHHhhhh
Confidence 578884 589999999999999999999999999999963 68999999999999875
|
Mutations in the CBS domain of Swiss:P35520 lead to homocystinuria.; InterPro: IPR000644 CBS (cystathionine-beta-synthase) domains are small intracellular modules, mostly found in two or four copies within a protein, that occur in a variety of proteins in bacteria, archaea, and eukaryotes [, ]. Tandem pairs of CBS domains can act as binding domains for adenosine derivatives and may regulate the activity of attached enzymatic or other domains []. In some cases, CBS domains may act as sensors of cellular energy status by being activated by AMP and inhibited by ATP []. In chloride ion channels, the CBS domains have been implicated in intracellular targeting and trafficking, as well as in protein-protein interactions, but results vary with different channels: in the CLC-5 channel, the CBS domain was shown to be required for trafficking [], while in the CLC-1 channel, the CBS domain was shown to be critical for channel function, but not necessary for trafficking []. Recent experiments revealing that CBS domains can bind adenosine-containing ligands such ATP, AMP, or S-adenosylmethionine have led to the hypothesis that CBS domains function as sensors of intracellular metabolites [, ]. Crystallographic studies of CBS domains have shown that pairs of CBS sequences form a globular domain where each CBS unit adopts a beta-alpha-beta-beta-alpha pattern []. Crystal structure of the CBS domains of the AMP-activated protein kinase in complexes with AMP and ATP shows that the phosphate groups of AMP/ATP lie in a surface pocket at the interface of two CBS domains, which is lined with basic residues, many of which are associated with disease-causing mutations []. In humans, mutations in conserved residues within CBS domains cause a variety of human hereditary diseases, including (with the gene mutated in parentheses): homocystinuria (cystathionine beta-synthase); Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase); retinitis pigmentosa (IMP dehydrogenase-1); congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members).; GO: 0005515 protein binding; PDB: 3JTF_A 3TE5_C 3TDH_C 3T4N_C 2QLV_C 3OI8_A 3LV9_A 2QH1_B 1PVM_B 3LQN_A .... |
| >cd04606 CBS_pair_Mg_transporter This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain in the magnesium transporter, MgtE | Back alignment and domain information |
|---|
Probab=98.83 E-value=2.7e-08 Score=81.35 Aligned_cols=101 Identities=24% Similarity=0.252 Sum_probs=82.1
Q ss_pred EeCChhHHHHHHHHhhCC-----CceEEEEccCCCCCCCCCCCCCCCeEEEEEehhHHHHHHhhcCCCCChhhhhcCChh
Q 016003 23 LSISAAIADALSALKNSD-----ESFISVWDCNCCSNHRKLGDACECQCVGKVCMVDVICYLCKDSNSLSPSLALKQPVS 97 (397)
Q Consensus 23 v~~~~tv~~Al~~L~~~~-----I~s~PV~d~~~~~~~~~~~~~~~~~~vGiv~~~Dil~~l~~~~~l~~~~~~~~~~V~ 97 (397)
+++++|+.+|++.|.+++ +..+||+|.+ ++++|+++..|++.. . .+.+++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvd~~-------------~~~~G~v~~~~l~~~---~---------~~~~v~ 56 (109)
T cd04606 2 VREDWTVGEALEYLRRNADDPETIYYIYVVDEE-------------GRLLGVVSLRDLLLA---D---------PDTPVS 56 (109)
T ss_pred ccccCcHHHHHHHHHhccCcccceeEEEEECCC-------------CCEEEEEEHHHHhcC---C---------CcchHH
Confidence 578899999999999887 5789999863 689999999999741 1 135688
Q ss_pred hhccCCCCCceEEeCCCCCHHHHHHHHh-cCCceEEEeccCcchhhhhhhcccccccccCCCCceeeeecHHHHHHH
Q 016003 98 VLLPQLLPPLVMHVEPSCSLLEAMDLML-GGAQNLVVPIKNRLSIKRKQQQKLSSSSLTNHNGREFCWLTQEDIIRF 173 (397)
Q Consensus 98 ~lm~~~~~~~~~~V~~~~sL~~al~~m~-~g~~r~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IITq~DIi~~ 173 (397)
++|... ++.+.+++++.++++.|. ++.+.++|.+++ ++..|+||..|+++.
T Consensus 57 ~~~~~~----~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~~---------------------~~~~Gvit~~dll~~ 108 (109)
T cd04606 57 DIMDTD----VISVSADDDQEEVARLFEKYDLLALPVVDEE---------------------GRLVGIITVDDVIDV 108 (109)
T ss_pred HHhCCC----CeEEcCCCCHHHHHHHHHHcCCceeeeECCC---------------------CcEEEEEEhHHhhhh
Confidence 888544 889999999999999999 788888877532 457899999999875
|
MgtE and its homologs are found in eubacteria, archaebacteria, and eukaryota. Members of this family transport Mg2+ or other divalent cations into the cell via two highly conserved aspartates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. |
| >TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase | Back alignment and domain information |
|---|
Probab=98.82 E-value=2.8e-08 Score=102.62 Aligned_cols=112 Identities=23% Similarity=0.226 Sum_probs=92.8
Q ss_pred CCeEEEeCChhHHHHHHHHhhCCCceEEEEccCCCCCCCCCCCCCCCeEEEEEehhHHHHHHhhcCCCCChhhhhcCChh
Q 016003 18 PALRALSISAAIADALSALKNSDESFISVWDCNCCSNHRKLGDACECQCVGKVCMVDVICYLCKDSNSLSPSLALKQPVS 97 (397)
Q Consensus 18 ~~li~v~~~~tv~~Al~~L~~~~I~s~PV~d~~~~~~~~~~~~~~~~~~vGiv~~~Dil~~l~~~~~l~~~~~~~~~~V~ 97 (397)
++++++++++|+.+|++.|.+++++.+||+|.+.. .++++|+|+.+|++... ..+.+++
T Consensus 88 ~~~vtl~~~~tv~eal~~m~~~~~s~lpVvd~~~~----------~~~lvGIVt~rDL~~~~-----------~~~~~V~ 146 (450)
T TIGR01302 88 SDPVTISPETTVADVLELMERKGISGIPVVEDGDM----------TGKLVGIITKRDIRFVK-----------DKGKPVS 146 (450)
T ss_pred cCceEeCCCCCHHHHHHHHHHcCCCEEEEEeCCCC----------CCeEEEEEEHHHHhhhh-----------cCCCCHH
Confidence 57899999999999999999999999999996310 15899999999997421 1246799
Q ss_pred hhccCCCCCceEEeCCCCCHHHHHHHHh-cCCceEEEeccCcchhhhhhhcccccccccCCCCceeeeecHHHHHHHH
Q 016003 98 VLLPQLLPPLVMHVEPSCSLLEAMDLML-GGAQNLVVPIKNRLSIKRKQQQKLSSSSLTNHNGREFCWLTQEDIIRFI 174 (397)
Q Consensus 98 ~lm~~~~~~~~~~V~~~~sL~~al~~m~-~g~~r~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IITq~DIi~~l 174 (397)
++|.. .+++++.+++++.++++.|. ++.+.++|+++. +...|+||..||++.+
T Consensus 147 dvm~~---~~~~~V~~~~sl~eal~~m~~~~~~~lpVVDe~---------------------G~lvGiVT~~DIl~~~ 200 (450)
T TIGR01302 147 EVMTR---EEVITVPEGIDLEEALKVLHEHRIEKLPVVDKN---------------------GELVGLITMKDIVKRR 200 (450)
T ss_pred HhhCC---CCCEEECCCCcHHHHHHHHHHcCCCeEEEEcCC---------------------CcEEEEEEhHHhhhcc
Confidence 99962 24899999999999999999 789999988632 4678999999999886
|
This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models. |
| >cd04634 CBS_pair_21 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=98.82 E-value=5.6e-08 Score=84.13 Aligned_cols=115 Identities=26% Similarity=0.264 Sum_probs=88.9
Q ss_pred CCeEEEeCChhHHHHHHHHhhCCCceEEEEccCCCCCCCCCCCCCCCeEEEEEehhHHHHHHhhcC---CCCC-------
Q 016003 18 PALRALSISAAIADALSALKNSDESFISVWDCNCCSNHRKLGDACECQCVGKVCMVDVICYLCKDS---NSLS------- 87 (397)
Q Consensus 18 ~~li~v~~~~tv~~Al~~L~~~~I~s~PV~d~~~~~~~~~~~~~~~~~~vGiv~~~Dil~~l~~~~---~l~~------- 87 (397)
++++++++++++.+|++.|.++++.++||+|. ++++|+++..|++.++.... ....
T Consensus 1 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vvd~--------------~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~ 66 (143)
T cd04634 1 KNPITCNADDTISDAARLLRENKISGAPVLDG--------------GKLVGIVSESDILKLLVTHDPSGNLWLPSPLELI 66 (143)
T ss_pred CCcEEecCCCCHHHHHHHHHHcCCCcceEeEC--------------CeEEEEecHHHHHHHHHhccCccccccCCcceee
Confidence 35789999999999999999999999999995 48999999999998875321 0000
Q ss_pred ----------------hhhhhcCChhhhccCCCCCceEEeCCCCCHHHHHHHHh-cCCceEEEeccCcchhhhhhhcccc
Q 016003 88 ----------------PSLALKQPVSVLLPQLLPPLVMHVEPSCSLLEAMDLML-GGAQNLVVPIKNRLSIKRKQQQKLS 150 (397)
Q Consensus 88 ----------------~~~~~~~~V~~lm~~~~~~~~~~V~~~~sL~~al~~m~-~g~~r~~V~~~~~~~~~~~~~~~~~ 150 (397)
.......++.++|... +..+.+++++.+++..|. .+.++++|...
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~----~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~-------------- 128 (143)
T cd04634 67 ELPLREFINWEETKRALTDAGKMKVRDIMTKK----VITISPDASIEDAAELMVRHKIKRLPVVED-------------- 128 (143)
T ss_pred eccchheeehHHHHHHHHHHhcCCHHHHcCCC----CeEECCCCcHHHHHHHHHHcCCCEEEEEEC--------------
Confidence 0001245677777544 889999999999999998 67888888753
Q ss_pred cccccCCCCceeeeecHHHHHH
Q 016003 151 SSSLTNHNGREFCWLTQEDIIR 172 (397)
Q Consensus 151 ~~~~~~~~~~~~~IITq~DIi~ 172 (397)
+..+|+||+.|+++
T Consensus 129 --------~~~~Gvvt~~dl~~ 142 (143)
T cd04634 129 --------GRLVGIVTRGDIIE 142 (143)
T ss_pred --------CEEEEEEEHHHhhc
Confidence 24678999999874
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener |
| >cd04594 CBS_pair_EriC_assoc_archaea This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the EriC CIC-type chloride channels in archaea | Back alignment and domain information |
|---|
Probab=98.82 E-value=5.2e-08 Score=79.19 Aligned_cols=99 Identities=16% Similarity=0.093 Sum_probs=82.0
Q ss_pred EEEeCChhHHHHHHHHhhCCCceEEEEccCCCCCCCCCCCCCCCeEEEEEehhHHHHHHhhcCCCCChhhhhcCChhhhc
Q 016003 21 RALSISAAIADALSALKNSDESFISVWDCNCCSNHRKLGDACECQCVGKVCMVDVICYLCKDSNSLSPSLALKQPVSVLL 100 (397)
Q Consensus 21 i~v~~~~tv~~Al~~L~~~~I~s~PV~d~~~~~~~~~~~~~~~~~~vGiv~~~Dil~~l~~~~~l~~~~~~~~~~V~~lm 100 (397)
+++++++++.+|++.|.++++..+||+|. ++++|+++..|+.... ..++.++|
T Consensus 4 ~~v~~~~~~~~~~~~~~~~~~~~~~V~d~--------------~~~~G~v~~~~l~~~~-------------~~~~~~~~ 56 (104)
T cd04594 4 IKVKDYDKVYEAKRIMIENDLLSLPVVDY--------------NKFLGAVYLKDIENAT-------------YGDVVDYI 56 (104)
T ss_pred eEECCCCCHHHHHHHHHHcCCcEEEEEEC--------------CEEEEEEEHHHHhhhc-------------ccchhhhh
Confidence 67899999999999999999999999994 4899999999998531 12466777
Q ss_pred cCCCCCceEEeCCCCCHHHHHHHHh-cCCceEEEeccCcchhhhhhhcccccccccCCCCceeeeecHHHHHH
Q 016003 101 PQLLPPLVMHVEPSCSLLEAMDLML-GGAQNLVVPIKNRLSIKRKQQQKLSSSSLTNHNGREFCWLTQEDIIR 172 (397)
Q Consensus 101 ~~~~~~~~~~V~~~~sL~~al~~m~-~g~~r~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IITq~DIi~ 172 (397)
... .+++.++.++.++++.|. ++..+++|+++ +..+|+||+.|+++
T Consensus 57 ~~~----~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~----------------------~~~iGvit~~dl~~ 103 (104)
T cd04594 57 VRG----IPYVRLTSTAEEAWEVMMKNKTRWCPVVDD----------------------GKFKGIVTLDSILD 103 (104)
T ss_pred hcC----CcEEcCCCCHHHHHHHHHHcCcceEEEEEC----------------------CEEEEEEEHHHhhc
Confidence 543 788999999999999998 78888888742 35689999999874
|
These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS do |
| >PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.81 E-value=9.6e-08 Score=99.55 Aligned_cols=113 Identities=19% Similarity=0.133 Sum_probs=92.5
Q ss_pred CCeEEEeCChhHHHHHHHHhhCCCceEEEEccCCCCCCCCCCCCCCCeEEEEEehhHHHHHHhhcCCCCChhhhhcCChh
Q 016003 18 PALRALSISAAIADALSALKNSDESFISVWDCNCCSNHRKLGDACECQCVGKVCMVDVICYLCKDSNSLSPSLALKQPVS 97 (397)
Q Consensus 18 ~~li~v~~~~tv~~Al~~L~~~~I~s~PV~d~~~~~~~~~~~~~~~~~~vGiv~~~Dil~~l~~~~~l~~~~~~~~~~V~ 97 (397)
++.+++++++|+.+|+++|.++++..+||+|.+. +.++++|+|+..|+... . ..+.+|+
T Consensus 104 ~dpvtv~pd~tv~eA~~lm~~~~~s~vpVvd~~~----------~~gkLvGIVt~~DL~~~--~---------~~~~~V~ 162 (495)
T PTZ00314 104 MDPYVLSPNHTVADVLEIKEKKGFSSILITVDGK----------VGGKLLGIVTSRDIDFV--K---------DKSTPVS 162 (495)
T ss_pred cCCeecCCCCCHHHHHHHHHHcCCcEEEEEeCCc----------cCCeEEEEEEHHHHhhc--c---------cCCCCHH
Confidence 4568999999999999999999999999999631 13689999999999721 1 1256899
Q ss_pred hhccCCCCCceEEeCCCCCHHHHHHHHh-cCCceEEEeccCcchhhhhhhcccccccccCCCCceeeeecHHHHHHHH
Q 016003 98 VLLPQLLPPLVMHVEPSCSLLEAMDLML-GGAQNLVVPIKNRLSIKRKQQQKLSSSSLTNHNGREFCWLTQEDIIRFI 174 (397)
Q Consensus 98 ~lm~~~~~~~~~~V~~~~sL~~al~~m~-~g~~r~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IITq~DIi~~l 174 (397)
++|.. ..+++++.+++++.+|+++|. ++.+.++|++++ +.++|+||..||++..
T Consensus 163 diMt~--~~~lvtv~~~~sl~eAl~lm~e~~i~~LPVVd~~---------------------g~liGIIT~~DIl~~~ 217 (495)
T PTZ00314 163 EVMTP--REKLVVGNTPISLEEANEVLRESRKGKLPIVNDN---------------------GELVALVSRSDLKKNR 217 (495)
T ss_pred HhhCC--cCCceEeCCCCCHHHHHHHHHHcCCCeEEEEcCC---------------------CcEEEEEEehHhhhcc
Confidence 99964 124899999999999999999 789999998632 3578999999999775
|
|
| >cd04591 CBS_pair_EriC_assoc_euk_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes and bacteria | Back alignment and domain information |
|---|
Probab=98.80 E-value=5.8e-08 Score=79.54 Aligned_cols=101 Identities=15% Similarity=0.179 Sum_probs=81.8
Q ss_pred ceEEeCCCCCHHHHHHHHh-cCCceEEEeccCcchhhhhhhcccccccccCCCCceeeeecHHHHHHHHHhccCCCCCCc
Q 016003 107 LVMHVEPSCSLLEAMDLML-GGAQNLVVPIKNRLSIKRKQQQKLSSSSLTNHNGREFCWLTQEDIIRFILSSISLFSPIP 185 (397)
Q Consensus 107 ~~~~V~~~~sL~~al~~m~-~g~~r~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IITq~DIi~~l~~~~~~l~~l~ 185 (397)
....+.++.++.++.+.|. .+..+++|.+... .+++..|+|+..|+.+...+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~------------------~~~~~~G~v~~~dl~~~~~~--------- 55 (105)
T cd04591 3 LVVLLPEGMTVEDLESLLSTTSHNGFPVVDSTE------------------ESPRLVGYILRSQLVVALKN--------- 55 (105)
T ss_pred ceEEecccccHHHHHHHHHhCCCCCcceEcCCC------------------CCCEEEEEEeHHHHHHHHHH---------
Confidence 4678899999999999888 4567777764310 02467899999999887642
Q ss_pred cCCccccCCCCcCeEEEeCCCcHHHHHHHHHhcCCCCCEEEEEcCCCcEEEeeccCcccC
Q 016003 186 ALSIDSLGIISTDVVAVDYHSPASLALEAISRSLFDQTSVAVVDSDGFLIGEISPSTLGC 245 (397)
Q Consensus 186 ~~ti~~L~~~~~~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~is~~dl~~ 245 (397)
+|.+++.++.+++++.++++.|.+++. ..+||++ +|+++|+||..||.+
T Consensus 56 --------~m~~~~~~v~~~~~l~~~~~~~~~~~~--~~~pVv~-~~~~~Gvvt~~dl~~ 104 (105)
T cd04591 56 --------YIDPSPFTVSPRTSLEKVHQLFRKLGL--RHLLVVD-EGRLVGIITRKDLLK 104 (105)
T ss_pred --------hccCCCceECCCCcHHHHHHHHHHcCC--CEEEEEE-CCeEEEEEEhhhhhc
Confidence 577788999999999999999999999 9999995 689999988776654
|
These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS |
| >COG2239 MgtE Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.78 E-value=7.3e-08 Score=98.67 Aligned_cols=125 Identities=22% Similarity=0.305 Sum_probs=100.2
Q ss_pred CCccCCccccCCCCcCeEEEeCCCcHHHHHHHHHhcCCC---CCEEEEEcCCCcEEEeeccCcccCcchhHHHHHhhcCh
Q 016003 183 PIPALSIDSLGIISTDVVAVDYHSPASLALEAISRSLFD---QTSVAVVDSDGFLIGEISPSTLGCCDETVAAAITTLSA 259 (397)
Q Consensus 183 ~l~~~ti~~L~~~~~~v~tv~~~~~~~~a~~~m~~~~i~---~s~vpVVd~~g~lvG~is~~dl~~~~~~~~~~~~~ls~ 259 (397)
+.+..+++. +|+.+.+++.++.++.+|+..+++.+-+ ...+-|||++++++|.+| -
T Consensus 128 ~y~e~taG~--~Mt~e~v~l~~~~Tv~~al~~ir~~~~~~e~~~~lyVvD~~~~L~Gvvs-------------------l 186 (451)
T COG2239 128 SYPEDTAGR--IMTTEFVTLPEDVTVDEALDRIRERAEDAETIYYLYVVDEKGKLLGVVS-------------------L 186 (451)
T ss_pred CCChhhhhc--cceeeeEEeccCcCHHHHHHHHHHhcccccccceEEEECCccceEEEee-------------------H
Confidence 344555554 7999999999999999999999854332 389999999999999954 4
Q ss_pred hhhhhhhccCCCCchhHHHHHHHhhhcchhhhhhhhccccCCCCCCCCCCCCCccchhhhccccCCCccccccchhhhhc
Q 016003 260 GDLMAYIDCGGPPEDLVRVVKERLKDKGLEGMLEHFDMSSSLMPYLSTSSSSDEESTATSKLTRSGKHSRSMSYSARMVR 339 (397)
Q Consensus 260 ~Dl~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (397)
++++. . +++ +. ...+|
T Consensus 187 ~~Ll~---a--~~~-------------------------------------------~~----------------i~~im 202 (451)
T COG2239 187 RDLLT---A--EPD-------------------------------------------EL----------------LKDLM 202 (451)
T ss_pred HHHhc---C--CcH-------------------------------------------hH----------------HHHHh
Confidence 44442 0 000 00 11356
Q ss_pred CCccEEeCCCCcHHHHHHHHHHcCCcEEEEEcCCCcEEEEEehHHHHHHHHHH
Q 016003 340 RAEAIVCHPTSSLMAVMIQAIAHRVTYVWVIEDDCTLTGIVTFSDLLKVFRKH 392 (397)
Q Consensus 340 ~~~~it~~~~~sl~~v~~~m~~~~i~rl~VVd~~~~lvGvVt~~DIl~~l~~~ 392 (397)
.+.++++.++++..++++.+-+|+.-.+||||++++++|+||..||+..+.++
T Consensus 203 ~~~~~~V~~~~dqeevA~~~~~ydl~a~PVVd~~~~LiG~itiDDiidvi~eE 255 (451)
T COG2239 203 EDDVVSVLADDDQEEVARLFEKYDLLAVPVVDEDNRLIGIITIDDIIDVIEEE 255 (451)
T ss_pred cccceeecccCCHHHHHHHHHHhCCeecceECCCCceeeeeeHHHHHHHHHHH
Confidence 77899999999999999999999999999999999999999999999999776
|
|
| >PRK11573 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.74 E-value=1.3e-07 Score=96.68 Aligned_cols=128 Identities=13% Similarity=0.193 Sum_probs=99.7
Q ss_pred CccCCccccCCCC--cCeEEEeCCCcHHHHHHHHHhcCCCCCEEEEEcCC-CcEEEeeccCcccCcchhHHHHHhhcChh
Q 016003 184 IPALSIDSLGIIS--TDVVAVDYHSPASLALEAISRSLFDQTSVAVVDSD-GFLIGEISPSTLGCCDETVAAAITTLSAG 260 (397)
Q Consensus 184 l~~~ti~~L~~~~--~~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~-g~lvG~is~~dl~~~~~~~~~~~~~ls~~ 260 (397)
+.++++.+ +|+ .++++++.++++.++++++.+++. |.+||.+++ +.++|+ +..+
T Consensus 184 l~~~~v~e--iMtPr~~i~~l~~~~~~~e~~~~~~~~~~--SR~PVy~~~~D~IiGi-------------------v~~k 240 (413)
T PRK11573 184 LEKVTVDD--IMVPRNEIVGIDINDDWKSILRQLTHSPH--GRIVLYRDSLDDAISM-------------------LRVR 240 (413)
T ss_pred cCCCChhh--cCCccceEEEEECCCCHHHHHHHHHhCCC--ceEEEEcCCCCceEEE-------------------EEHH
Confidence 34566666 787 479999999999999999999999 999999764 589999 5567
Q ss_pred hhhhhhccCCCCchhHHHHHHHhhhcchhhhhhhhccccCCCCCCCCCCCCCccchhhhccccCCCccccccchhhhhcC
Q 016003 261 DLMAYIDCGGPPEDLVRVVKERLKDKGLEGMLEHFDMSSSLMPYLSTSSSSDEESTATSKLTRSGKHSRSMSYSARMVRR 340 (397)
Q Consensus 261 Dl~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (397)
|+..+...+. ... . .. + . ...
T Consensus 241 Dll~~~~~~~----------------~~~-~-------------------------~~--------l--------~-~~~ 261 (413)
T PRK11573 241 EAYRLMTEKK----------------EFT-K-------------------------EN--------M--------L-RAA 261 (413)
T ss_pred HHHHHhhccC----------------cCC-H-------------------------HH--------H--------H-hhc
Confidence 7664221000 000 0 00 0 0 013
Q ss_pred CccEEeCCCCcHHHHHHHHHHcCCcEEEEEcCCCcEEEEEehHHHHHHHHHHH
Q 016003 341 AEAIVCHPTSSLMAVMIQAIAHRVTYVWVIEDDCTLTGIVTFSDLLKVFRKHL 393 (397)
Q Consensus 341 ~~~it~~~~~sl~~v~~~m~~~~i~rl~VVd~~~~lvGvVt~~DIl~~l~~~~ 393 (397)
+++..+..+.++.++++.|.+++.|-.-|+|+-|..+|+||+.||+..++..+
T Consensus 262 r~~~~Vpe~~~l~~lL~~~~~~~~~~AiVvDEyG~~~GiVTleDilEeivGei 314 (413)
T PRK11573 262 DEIYFVPEGTPLSTQLVKFQRNKKKVGLVVDEYGDIQGLVTVEDILEEIVGDF 314 (413)
T ss_pred cCCeEeCCCCcHHHHHHHHHhcCCeEEEEEecCCCeEEEeeHHHHHHHHhCCC
Confidence 47899999999999999999999999999999999999999999999998654
|
|
| >cd04598 CBS_pair_GGDEF_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain | Back alignment and domain information |
|---|
Probab=98.70 E-value=2.7e-07 Score=76.35 Aligned_cols=112 Identities=24% Similarity=0.251 Sum_probs=85.4
Q ss_pred CeEEEeCChhHHHHHHHHhhCC-CceEEEEccCCCCCCCCCCCCCCCeEEEEEehhHHHHHHhhcCCCCChhhhhcCChh
Q 016003 19 ALRALSISAAIADALSALKNSD-ESFISVWDCNCCSNHRKLGDACECQCVGKVCMVDVICYLCKDSNSLSPSLALKQPVS 97 (397)
Q Consensus 19 ~li~v~~~~tv~~Al~~L~~~~-I~s~PV~d~~~~~~~~~~~~~~~~~~vGiv~~~Dil~~l~~~~~l~~~~~~~~~~V~ 97 (397)
++.++++++++.+|++.|.+++ +..+||+|. ++++|+++..|++..+.... ......+.++.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vvd~--------------~~~~G~v~~~~l~~~~~~~~---~~~~~~~~~v~ 64 (119)
T cd04598 2 PAPTVSPDTTVNDVLERFERDPDLSALAVVDD--------------GRPVGLIMREALMELLSTPY---GRALYGKKPVS 64 (119)
T ss_pred CcCccCCCCcHHHHHHHHHhCCCccEEEEEEC--------------CeeEEEEEHHHHHHHHhchh---hHHHHcCCcHH
Confidence 4667899999999999999887 999999995 37999999999997665311 01112346799
Q ss_pred hhccCCCCCceEEeCCCCCHHHHHHHHh-cCCceE---EEeccCcchhhhhhhcccccccccCCCCceeeeecHHHHHH
Q 016003 98 VLLPQLLPPLVMHVEPSCSLLEAMDLML-GGAQNL---VVPIKNRLSIKRKQQQKLSSSSLTNHNGREFCWLTQEDIIR 172 (397)
Q Consensus 98 ~lm~~~~~~~~~~V~~~~sL~~al~~m~-~g~~r~---~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IITq~DIi~ 172 (397)
++|... +..+.+++++.+++..|. ++.+++ +|+++ .+..+|+||..|+++
T Consensus 65 ~~~~~~----~~~v~~~~~~~~~~~~~~~~~~~~~~~~~vv~~---------------------~~~~~Gvvs~~di~~ 118 (119)
T cd04598 65 EVMDPD----PLIVEADTPLEEVSRLATGRDSQNLYDGFIVTE---------------------EGRYLGIGTVKDLLR 118 (119)
T ss_pred HhcCCC----cEEecCCCCHHHHHHHHHcCCcccccccEEEee---------------------CCeEEEEEEHHHHhc
Confidence 999654 889999999999999998 554332 34432 246789999999874
|
The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. |
| >COG1253 TlyC Hemolysins and related proteins containing CBS domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.65 E-value=7e-07 Score=91.74 Aligned_cols=163 Identities=21% Similarity=0.206 Sum_probs=117.2
Q ss_pred ccccchhhhhhcCCCCeEEEeCChhHHHHHHHHhhCCCceEEEEccCCCCCCCCCCCCCCCeEEEEEehhHHHHHHhhcC
Q 016003 4 SLLADEVSDLCLGKPALRALSISAAIADALSALKNSDESFISVWDCNCCSNHRKLGDACECQCVGKVCMVDVICYLCKDS 83 (397)
Q Consensus 4 ~~~~~~v~dl~~~k~~li~v~~~~tv~~Al~~L~~~~I~s~PV~d~~~~~~~~~~~~~~~~~~vGiv~~~Dil~~l~~~~ 83 (397)
-|.+.+|+++|....+++.++.+.+++++.+.+.+++.+.+||++.. .+.++|++...|++.++..+.
T Consensus 202 ~l~~~~v~eiMtPR~~i~~l~~~~~~~~~~~~~~~~~~SR~PV~~~~------------~D~iiGiv~~Kdll~~~~~~~ 269 (429)
T COG1253 202 DLDDRTVREIMTPRTDIVALDLTDTVEELIELILESGHSRIPVYDGD------------LDNIIGIVHVKDLLRALLDGQ 269 (429)
T ss_pred ccCCcEeeeEeeecccEEEEcCCCCHHHHHHHHHhCCCCeeeEEcCC------------CCcEEEEEEHHHHHHHHhcCc
Confidence 46788999999988899999999999999999999999999999932 478999999999999987642
Q ss_pred CCCChhhhhcCChhhhccCCCCCceEEeCCCCCHHHHHHHHhc-CCceEEEeccCcchhhhhhhcccccccccCCCCcee
Q 016003 84 NSLSPSLALKQPVSVLLPQLLPPLVMHVEPSCSLLEAMDLMLG-GAQNLVVPIKNRLSIKRKQQQKLSSSSLTNHNGREF 162 (397)
Q Consensus 84 ~l~~~~~~~~~~V~~lm~~~~~~~~~~V~~~~sL~~al~~m~~-g~~r~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (397)
.. ... ...+ .+++.|.+..++.++++.|.+ +.|=..|.++- |...
T Consensus 270 ~~----~~~----~~~~-----~~~~~Vpet~~~~~lL~~~r~~~~hmAiVvDEy---------------------G~~~ 315 (429)
T COG1253 270 SD----LDL----RVLV-----RPPLFVPETLSLSDLLEEFREERTHMAIVVDEY---------------------GGVE 315 (429)
T ss_pred cc----cch----hhcc-----cCCeEecCCCcHHHHHHHHHHhCCeEEEEEEcC---------------------CCeE
Confidence 10 011 1112 158999999999999999994 44444444321 4577
Q ss_pred eeecHHHHHHHHHhccC-CCCCCccCCccccCCCCcCeEEEeCCCcHHHHHHHH
Q 016003 163 CWLTQEDIIRFILSSIS-LFSPIPALSIDSLGIISTDVVAVDYHSPASLALEAI 215 (397)
Q Consensus 163 ~IITq~DIi~~l~~~~~-~l~~l~~~ti~~L~~~~~~v~tv~~~~~~~~a~~~m 215 (397)
|+||.+||+.-+..... +...--...+ ....... +.+...+++.+.-+.+
T Consensus 316 GlVTleDIiEeIvGei~de~d~~~~~~~--~~~~~~~-~~v~G~~~l~e~~~~l 366 (429)
T COG1253 316 GLVTLEDIIEEIVGEIPDEHDEDEEEDI--IQRDDDG-WLVDGRVPLEELEELL 366 (429)
T ss_pred EEeEHHHHHHHHhCCCcCcccccccccc--eEecCCc-EEEeccccHHHHHHHh
Confidence 89999999999874321 1111000111 1122345 7888999998776655
|
|
| >TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Probab=98.62 E-value=6e-07 Score=90.18 Aligned_cols=113 Identities=18% Similarity=0.195 Sum_probs=88.9
Q ss_pred CCcCeEEEeCCCcHHHHHHHHHhcCCCCCEEEEEcCCCcEEEeeccCcccCcchhHHHHHhhcChhhhhhhhccCCCCch
Q 016003 195 ISTDVVAVDYHSPASLALEAISRSLFDQTSVAVVDSDGFLIGEISPSTLGCCDETVAAAITTLSAGDLMAYIDCGGPPED 274 (397)
Q Consensus 195 ~~~~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~is~~dl~~~~~~~~~~~~~ls~~Dl~~~~~~~~~~~~ 274 (397)
+........++.+..++++.|...+. ..+.|+|+++++.|. ++..++..+....+
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~g~-------------------~~~~~~~~~~~~~~---- 302 (363)
T TIGR01186 248 MNTGPITKTADKGPRSALQLMRDERV--DSLYVVDRQNKLVGV-------------------VDVESIKQARKKAQ---- 302 (363)
T ss_pred ccccceeecCCCCHHHHHHHHHhcCC--ceEEEEcCCCCEEEE-------------------EeHHHHHHHhhcCC----
Confidence 33445567788899999999999988 999999999999998 44555544321100
Q ss_pred hHHHHHHHhhhcchhhhhhhhccccCCCCCCCCCCCCCccchhhhccccCCCccccccchhhhhcCCccEEeCCCCcHHH
Q 016003 275 LVRVVKERLKDKGLEGMLEHFDMSSSLMPYLSTSSSSDEESTATSKLTRSGKHSRSMSYSARMVRRAEAIVCHPTSSLMA 354 (397)
Q Consensus 275 l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~~~~sl~~ 354 (397)
.+ .+.+.....+++++++|.+
T Consensus 303 ---------------------------------------------------~~--------~~~~~~~~~~~~~~~~~~~ 323 (363)
T TIGR01186 303 ---------------------------------------------------GL--------QDVLIDDIYTVDAGTLLRE 323 (363)
T ss_pred ---------------------------------------------------ch--------hhhhccCCceECCCCcHHH
Confidence 00 0113446678999999999
Q ss_pred HHHHHHHcCCcEEEEEcCCCcEEEEEehHHHHHHHHHH
Q 016003 355 VMIQAIAHRVTYVWVIEDDCTLTGIVTFSDLLKVFRKH 392 (397)
Q Consensus 355 v~~~m~~~~i~rl~VVd~~~~lvGvVt~~DIl~~l~~~ 392 (397)
++..|.+++.. +||||++|+++|+||+.++++++...
T Consensus 324 ~~~~~~~~~~~-~~v~~~~~~~~g~i~~~~~~~~~~~~ 360 (363)
T TIGR01186 324 TVRKVLKAGIK-VPVVDEDQRLVGIVTRGSLVDALYDS 360 (363)
T ss_pred HHHHHHhCCCC-EEEECCCCcEEEEEEHHHHHHHHHhh
Confidence 99999999999 99999999999999999999999764
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact |
| >cd04638 CBS_pair_25 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=98.58 E-value=8e-07 Score=72.10 Aligned_cols=103 Identities=21% Similarity=0.253 Sum_probs=83.7
Q ss_pred CeEEEeCChhHHHHHHHHhhCCCceEEEEccCCCCCCCCCCCCCCCeEEEEEehhHHHHHHhhcCCCCChhhhhcCChhh
Q 016003 19 ALRALSISAAIADALSALKNSDESFISVWDCNCCSNHRKLGDACECQCVGKVCMVDVICYLCKDSNSLSPSLALKQPVSV 98 (397)
Q Consensus 19 ~li~v~~~~tv~~Al~~L~~~~I~s~PV~d~~~~~~~~~~~~~~~~~~vGiv~~~Dil~~l~~~~~l~~~~~~~~~~V~~ 98 (397)
+++++.+++++.+|+..|.++++..+||++.+ ++++|+++..|++... . +.++.+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-------------~~~~g~v~~~~l~~~~---~---------~~~~~~ 56 (106)
T cd04638 2 NVVYVTLPGTRDDVLELLKEYKVSGVPVVKKS-------------GELVGIITRKDLLRNP---E---------EEQLAL 56 (106)
T ss_pred CcEEECCCCCHHHHHHHHHHcCCCeEEEEcCC-------------CcEEEEEEHHHHHhcc---c---------cchHHH
Confidence 57889999999999999999999999999963 6899999999997421 0 134677
Q ss_pred hccCCCCCceEEeCCCCCHHHHHHHHh-cCCceEEEeccCcchhhhhhhcccccccccCCCCceeeeecHHHHHH
Q 016003 99 LLPQLLPPLVMHVEPSCSLLEAMDLML-GGAQNLVVPIKNRLSIKRKQQQKLSSSSLTNHNGREFCWLTQEDIIR 172 (397)
Q Consensus 99 lm~~~~~~~~~~V~~~~sL~~al~~m~-~g~~r~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IITq~DIi~ 172 (397)
+|... +.++.+++++.++++.|. ++.+.++|.+. +..+|+||..|+++
T Consensus 57 ~~~~~----~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~----------------------~~~~G~it~~d~~~ 105 (106)
T cd04638 57 LMTRD----PPTVSPDDDVKEAAKLMVENNIRRVPVVDD----------------------GKLVGIVTVADIVR 105 (106)
T ss_pred HhcCC----CceECCCCCHHHHHHHHHHcCCCEEEEEEC----------------------CEEEEEEEHHHhhc
Confidence 77543 788999999999999998 78888888752 24678999999864
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener |
| >COG4109 Predicted transcriptional regulator containing CBS domains [Transcription] | Back alignment and domain information |
|---|
Probab=98.55 E-value=5.6e-07 Score=87.56 Aligned_cols=119 Identities=18% Similarity=0.222 Sum_probs=103.1
Q ss_pred hhhhhhcCCCCeEEEeCChhHHHHHHHHhhCCCceEEEEccCCCCCCCCCCCCCCCeEEEEEehhHHHHHHhhcCCCCCh
Q 016003 9 EVSDLCLGKPALRALSISAAIADALSALKNSDESFISVWDCNCCSNHRKLGDACECQCVGKVCMVDVICYLCKDSNSLSP 88 (397)
Q Consensus 9 ~v~dl~~~k~~li~v~~~~tv~~Al~~L~~~~I~s~PV~d~~~~~~~~~~~~~~~~~~vGiv~~~Dil~~l~~~~~l~~~ 88 (397)
+|.|+|..-...-.+..++++++=.++--+.|.+.-||+|. ..+++|+|+++|++..
T Consensus 189 ~Vedi~~P~~~~~yL~~~d~v~d~~~l~~kt~~sRfPVvn~-------------~~kvvGvVt~rDv~~~---------- 245 (432)
T COG4109 189 TVEDIMTPLEDTSYLRETDTVEDWLDLVEKTGHSRFPVVNR-------------SMKVVGVVTMRDVLDK---------- 245 (432)
T ss_pred eHHHhccccccceeccccccHHHHHHHHHHcCCCccceecc-------------cceEEEEEEehhhhcC----------
Confidence 57888875566788999999999999999999999999996 3689999999999832
Q ss_pred hhhhcCChhhhccCCCCCceEEeCCCCCHHHHHHHHh-cCCceEEEeccCcchhhhhhhcccccccccCCCCceeeeecH
Q 016003 89 SLALKQPVSVLLPQLLPPLVMHVEPSCSLLEAMDLML-GGAQNLVVPIKNRLSIKRKQQQKLSSSSLTNHNGREFCWLTQ 167 (397)
Q Consensus 89 ~~~~~~~V~~lm~~~~~~~~~~V~~~~sL~~al~~m~-~g~~r~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IITq 167 (397)
..++++..+|.++ +.++.+.+|+..+.+.|. .|+.=+||++++ .+.+||||+
T Consensus 246 --~~~t~ieKVMtkn----p~tv~~~tsVAsvaq~MiwE~iem~PVv~~n---------------------~~llGiitR 298 (432)
T COG4109 246 --KPSTTIEKVMTKN----PITVRAKTSVASVAQMMIWEGIEMLPVVDSN---------------------NTLLGIITR 298 (432)
T ss_pred --CCCccHHHHhccC----CeeecccchHHHHHHHHHhccceeeeEEcCC---------------------ceEEEEEEH
Confidence 3357899999988 899999999999999999 899999998754 357899999
Q ss_pred HHHHHHHHhc
Q 016003 168 EDIIRFILSS 177 (397)
Q Consensus 168 ~DIi~~l~~~ 177 (397)
.|+++.+...
T Consensus 299 ~dvlk~lq~~ 308 (432)
T COG4109 299 QDVLKSLQMI 308 (432)
T ss_pred HHHHHHHHHh
Confidence 9999998653
|
|
| >COG1253 TlyC Hemolysins and related proteins containing CBS domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.45 E-value=1.9e-06 Score=88.52 Aligned_cols=126 Identities=21% Similarity=0.274 Sum_probs=99.4
Q ss_pred CccCCccccCCCC--cCeEEEeCCCcHHHHHHHHHhcCCCCCEEEEEc-CCCcEEEeeccCcccCcchhHHHHHhhcChh
Q 016003 184 IPALSIDSLGIIS--TDVVAVDYHSPASLALEAISRSLFDQTSVAVVD-SDGFLIGEISPSTLGCCDETVAAAITTLSAG 260 (397)
Q Consensus 184 l~~~ti~~L~~~~--~~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd-~~g~lvG~is~~dl~~~~~~~~~~~~~ls~~ 260 (397)
+.++++.+ +|+ .+++.+..+.++.++.+.+.+++. |.+||.+ +.+.++|+ +..+
T Consensus 203 l~~~~v~e--iMtPR~~i~~l~~~~~~~~~~~~~~~~~~--SR~PV~~~~~D~iiGi-------------------v~~K 259 (429)
T COG1253 203 LDDRTVRE--IMTPRTDIVALDLTDTVEELIELILESGH--SRIPVYDGDLDNIIGI-------------------VHVK 259 (429)
T ss_pred cCCcEeee--EeeecccEEEEcCCCCHHHHHHHHHhCCC--CeeeEEcCCCCcEEEE-------------------EEHH
Confidence 34566666 787 479999999999999999999999 9999999 34599999 5577
Q ss_pred hhhhhhccCCCCchhHHHHHHHhhhcchhhhhhhhccccCCCCCCCCCCCCCccchhhhccccCCCccccccchhhhhcC
Q 016003 261 DLMAYIDCGGPPEDLVRVVKERLKDKGLEGMLEHFDMSSSLMPYLSTSSSSDEESTATSKLTRSGKHSRSMSYSARMVRR 340 (397)
Q Consensus 261 Dl~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (397)
|++...... . . .+ ... ..-
T Consensus 260 dll~~~~~~--------------------------~---~-~~--------------------~~~-----------~~~ 278 (429)
T COG1253 260 DLLRALLDG--------------------------Q---S-DL--------------------DLR-----------VLV 278 (429)
T ss_pred HHHHHHhcC--------------------------c---c-cc--------------------chh-----------hcc
Confidence 777632110 0 0 00 000 012
Q ss_pred CccEEeCCCCcHHHHHHHHHHcCCcEEEEEcCCCcEEEEEehHHHHHHHHHHH
Q 016003 341 AEAIVCHPTSSLMAVMIQAIAHRVTYVWVIEDDCTLTGIVTFSDLLKVFRKHL 393 (397)
Q Consensus 341 ~~~it~~~~~sl~~v~~~m~~~~i~rl~VVd~~~~lvGvVt~~DIl~~l~~~~ 393 (397)
.+++.+.+..++.+++++|.+++.|---|+|+-|...|+||+.||+..++..+
T Consensus 279 ~~~~~Vpet~~~~~lL~~~r~~~~hmAiVvDEyG~~~GlVTleDIiEeIvGei 331 (429)
T COG1253 279 RPPLFVPETLSLSDLLEEFREERTHMAIVVDEYGGVEGLVTLEDIIEEIVGEI 331 (429)
T ss_pred cCCeEecCCCcHHHHHHHHHHhCCeEEEEEEcCCCeEEEeEHHHHHHHHhCCC
Confidence 28899999999999999999999999999999999999999999999998753
|
|
| >PRK10070 glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=98.45 E-value=1.8e-06 Score=87.85 Aligned_cols=107 Identities=13% Similarity=0.133 Sum_probs=83.3
Q ss_pred EEeCCCcHHHHHHHHHhcCCCCCEEEEEcCCCcEEEeeccCcccCcchhHHHHHhhcChhhhhhhhccCCCCchhHHHHH
Q 016003 201 AVDYHSPASLALEAISRSLFDQTSVAVVDSDGFLIGEISPSTLGCCDETVAAAITTLSAGDLMAYIDCGGPPEDLVRVVK 280 (397)
Q Consensus 201 tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~is~~dl~~~~~~~~~~~~~ls~~Dl~~~~~~~~~~~~l~~~~~ 280 (397)
...++.+..+|++.|...+. ..+.|+|++|+++|.| +..++.......
T Consensus 289 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~g~~-------------------~~~~~~~~~~~~----------- 336 (400)
T PRK10070 289 RKTPGFGPRSALKLLQDEDR--EYGYVIERGNKFVGAV-------------------SIDSLKTALTQQ----------- 336 (400)
T ss_pred ccCCCCCHHHHHHHHHhcCC--ceEEEEcCCCcEEEEE-------------------eHHHHHhhhhcC-----------
Confidence 34577789999999999999 9999999999999984 455544311100
Q ss_pred HHhhhcchhhhhhhhccccCCCCCCCCCCCCCccchhhhccccCCCccccccchhhhhcCCccEEeCCCCcHHHHHHHHH
Q 016003 281 ERLKDKGLEGMLEHFDMSSSLMPYLSTSSSSDEESTATSKLTRSGKHSRSMSYSARMVRRAEAIVCHPTSSLMAVMIQAI 360 (397)
Q Consensus 281 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~~~~sl~~v~~~m~ 360 (397)
. .+ ...+.....++.++++|.+++..|.
T Consensus 337 --------~------------------------------------~~--------~~~~~~~~~~~~~~~~~~~~~~~~~ 364 (400)
T PRK10070 337 --------Q------------------------------------GL--------DAALIDAPLAVDAQTPLSELLSHVG 364 (400)
T ss_pred --------C------------------------------------ch--------hhhhccCCceeCCCCCHHHHHHHHH
Confidence 0 00 0012345679999999999999999
Q ss_pred HcCCcEEEEEcCCCcEEEEEehHHHHHHHHHH
Q 016003 361 AHRVTYVWVIEDDCTLTGIVTFSDLLKVFRKH 392 (397)
Q Consensus 361 ~~~i~rl~VVd~~~~lvGvVt~~DIl~~l~~~ 392 (397)
++... +||||++|+++|+||+.++++++...
T Consensus 365 ~~~~~-~~v~~~~~~~~g~~~~~~~~~~~~~~ 395 (400)
T PRK10070 365 QAPCA-VPVVDEDQQYVGIISKGMLLRALDRE 395 (400)
T ss_pred hCCCc-EEEECCCCcEEEEEEHHHHHHHHHhc
Confidence 97766 99999999999999999999999753
|
|
| >smart00116 CBS Domain in cystathionine beta-synthase and other proteins | Back alignment and domain information |
|---|
Probab=98.29 E-value=2.4e-06 Score=58.04 Aligned_cols=48 Identities=23% Similarity=0.427 Sum_probs=44.3
Q ss_pred ccEEeCCCCcHHHHHHHHHHcCCcEEEEEcCCCcEEEEEehHHHHHHH
Q 016003 342 EAIVCHPTSSLMAVMIQAIAHRVTYVWVIEDDCTLTGIVTFSDLLKVF 389 (397)
Q Consensus 342 ~~it~~~~~sl~~v~~~m~~~~i~rl~VVd~~~~lvGvVt~~DIl~~l 389 (397)
+++++.+++++.+++..|.+++++++||++++++++|+++..|+++.+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~g~i~~~~l~~~~ 48 (49)
T smart00116 1 DVVTVSPDTTLEEALELLREHGIRRLPVVDEEGRLVGIVTRRDIIKAL 48 (49)
T ss_pred CceEecCCCcHHHHHHHHHHhCCCcccEECCCCeEEEEEEHHHHHHhh
Confidence 357899999999999999999999999999988999999999998765
|
Domain present in all 3 forms of cellular life. Present in two copies in inosine monophosphate dehydrogenase, of which one is disordered in the crystal structure [3]. A number of disease states are associated with CBS-containing proteins including homocystinuria, Becker's and Thomsen disease. |
| >KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.28 E-value=1.2e-06 Score=86.83 Aligned_cols=107 Identities=16% Similarity=0.173 Sum_probs=86.0
Q ss_pred CeEEEeCCCcHHHHHHHHHhcCCCCCEEEEEcC---CCcEEEeeccCcccCcchhHHHHHhhcChhhhhhhhccCCCCch
Q 016003 198 DVVAVDYHSPASLALEAISRSLFDQTSVAVVDS---DGFLIGEISPSTLGCCDETVAAAITTLSAGDLMAYIDCGGPPED 274 (397)
Q Consensus 198 ~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~---~g~lvG~is~~dl~~~~~~~~~~~~~ls~~Dl~~~~~~~~~~~~ 274 (397)
+.+.+.|+.++.++++.-..+++ +++||.++ .+||+|+|| .+|+-..-+.
T Consensus 117 ~p~v~sp~~tvg~v~~~k~~~gF--~g~pvTe~g~~~~KLvG~vt-------------------srdi~f~~~~------ 169 (503)
T KOG2550|consen 117 NPIVISPTTTVGEVKEAKEKHGF--SGIPVTEDGKRGSKLVGIIT-------------------SRDIQFLEDN------ 169 (503)
T ss_pred CCcccCCcccchhhhhhcccccc--cccccccCCcccceeEEEEe-------------------hhhhhhhhcc------
Confidence 46678999999999999999999 99999975 349999966 4443211000
Q ss_pred hHHHHHHHhhhcchhhhhhhhccccCCCCCCCCCCCCCccchhhhccccCCCccccccchhhhhcCCccEEeCCCCcHHH
Q 016003 275 LVRVVKERLKDKGLEGMLEHFDMSSSLMPYLSTSSSSDEESTATSKLTRSGKHSRSMSYSARMVRRAEAIVCHPTSSLMA 354 (397)
Q Consensus 275 l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~~~~sl~~ 354 (397)
.. . ..++|+...++...+.+|.+
T Consensus 170 --------------------------~~-----------------------~--------~~~vmt~~~~~~~~gi~l~~ 192 (503)
T KOG2550|consen 170 --------------------------SL-----------------------L--------VSDVMTKNPVTGAQGITLKE 192 (503)
T ss_pred --------------------------cc-----------------------h--------hhhhcccccccccccccHHH
Confidence 00 0 11357777799999999999
Q ss_pred HHHHHHHcCCcEEEEEcCCCcEEEEEehHHHHHH
Q 016003 355 VMIQAIAHRVTYVWVIEDDCTLTGIVTFSDLLKV 388 (397)
Q Consensus 355 v~~~m~~~~i~rl~VVd~~~~lvGvVt~~DIl~~ 388 (397)
+=+.+.+++-.++||||++|.||-||+++|+.|.
T Consensus 193 ~neiL~~~kkGkl~iv~~~gelva~~~rtDl~k~ 226 (503)
T KOG2550|consen 193 ANEILKKIKKGKLPVVDDKGELVAMLSRTDLMKN 226 (503)
T ss_pred HHHHHHhhhcCCcceeccCCceeeeeehhhhhhh
Confidence 9999999999999999999999999999999875
|
|
| >COG4536 CorB Putative Mg2+ and Co2+ transporter CorB [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.26 E-value=9.9e-06 Score=79.74 Aligned_cols=128 Identities=16% Similarity=0.187 Sum_probs=102.3
Q ss_pred cccchhhhhhcCCCCeEEEeCChhHHHHHHHHhhCCCceEEEEccCCCCCCCCCCCCCCCeEEEEEehhHHHHHHhhcCC
Q 016003 5 LLADEVSDLCLGKPALRALSISAAIADALSALKNSDESFISVWDCNCCSNHRKLGDACECQCVGKVCMVDVICYLCKDSN 84 (397)
Q Consensus 5 ~~~~~v~dl~~~k~~li~v~~~~tv~~Al~~L~~~~I~s~PV~d~~~~~~~~~~~~~~~~~~vGiv~~~Dil~~l~~~~~ 84 (397)
|...+|+|+|....++..++.+++.++.++.+...-...+|||..+ -++.+|++..+|+++++.+.++
T Consensus 197 Le~~tV~DIMvpR~~i~~id~d~~~e~iv~ql~~s~HtRiplyr~~------------~DnIiGvlh~r~llr~l~e~~~ 264 (423)
T COG4536 197 LENLTVSDIMVPRNEIIGIDIDDPWEEIVRQLLHSPHTRIPLYRDD------------LDNIIGVLHVRDLLRLLNEKNE 264 (423)
T ss_pred cccceeeeeeccccceeeecCCCCHHHHHHHHhhCCCCceeeecCC------------hhHhhhhhhHHHHHHHhhccCc
Confidence 5678999999988899999999999999999999999999999864 3579999999999999997543
Q ss_pred CCChhhhhcCChhhhccCCCCCceEEeCCCCCHHHHHHHHhcCCceEEEeccCcchhhhhhhcccccccccCCCCceeee
Q 016003 85 SLSPSLALKQPVSVLLPQLLPPLVMHVEPSCSLLEAMDLMLGGAQNLVVPIKNRLSIKRKQQQKLSSSSLTNHNGREFCW 164 (397)
Q Consensus 85 l~~~~~~~~~~V~~lm~~~~~~~~~~V~~~~sL~~al~~m~~g~~r~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I 164 (397)
.. +..+..+.. ++|.|+.+++|.+-+.-|.++-+|+-++.+. =|.+.|+
T Consensus 265 ~~------k~d~~~~a~-----epyFVPe~Tpl~~QL~~F~~~k~hialVVDE--------------------YG~i~GL 313 (423)
T COG4536 265 FT------KEDILRAAD-----EPYFVPEGTPLSDQLVAFQRNKKHIALVVDE--------------------YGDIQGL 313 (423)
T ss_pred cc------HhHHHHHhc-----CCeecCCCCcHHHHHHHHHHhcceEEEEEec--------------------cCcEEee
Confidence 22 122233333 3799999999999999999666677444332 1466789
Q ss_pred ecHHHHHHHHH
Q 016003 165 LTQEDIIRFIL 175 (397)
Q Consensus 165 ITq~DIi~~l~ 175 (397)
+|-+||+.=+.
T Consensus 314 VTLEDIlEEIV 324 (423)
T COG4536 314 VTLEDILEEIV 324 (423)
T ss_pred eeHHHHHHHHh
Confidence 99999997764
|
|
| >cd04597 CBS_pair_DRTGG_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream | Back alignment and domain information |
|---|
Probab=98.12 E-value=6.5e-06 Score=68.46 Aligned_cols=53 Identities=26% Similarity=0.387 Sum_probs=48.4
Q ss_pred hhhhcCCccEEeCCCCcHHHHHHHHHHcCCcEEEEEcCCCcEEEEEehHHHHH
Q 016003 335 ARMVRRAEAIVCHPTSSLMAVMIQAIAHRVTYVWVIEDDCTLTGIVTFSDLLK 387 (397)
Q Consensus 335 ~~~~~~~~~it~~~~~sl~~v~~~m~~~~i~rl~VVd~~~~lvGvVt~~DIl~ 387 (397)
..++|..++.++.+++++.++++.|.+++++.+||+|++|+++|+||..||.+
T Consensus 60 v~dim~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~~~l~Givt~~dl~~ 112 (113)
T cd04597 60 VRDVINRKPVTARPNDPLREALNLMHEHNIRTLPVVDDDGTPAGIITLLDLAE 112 (113)
T ss_pred HHHhcCCCCCEECCcCcHHHHHHHHHHcCCCEEEEECCCCeEEEEEEHHHhhc
Confidence 34567788999999999999999999999999999999899999999999864
|
The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. |
| >KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.95 E-value=2.3e-05 Score=77.88 Aligned_cols=163 Identities=14% Similarity=0.122 Sum_probs=114.7
Q ss_pred HHhhCCCceEEEEccCCCCCCCCCCCCCCCeEEEEEehhHHHHHHhhc-------CCCCChhh-hhcCChhhhccCCCCC
Q 016003 35 ALKNSDESFISVWDCNCCSNHRKLGDACECQCVGKVCMVDVICYLCKD-------SNSLSPSL-ALKQPVSVLLPQLLPP 106 (397)
Q Consensus 35 ~L~~~~I~s~PV~d~~~~~~~~~~~~~~~~~~vGiv~~~Dil~~l~~~-------~~l~~~~~-~~~~~V~~lm~~~~~~ 106 (397)
.|.++.-...|.+.++ ..-|++.+...+++.- .|-....+ ..-+.|+.+- +..-+
T Consensus 54 ~ltr~itl~tPlvsSp----------------MDTVtes~MAiaMAl~ggIg~IHhNctpe~QA~~v~~vK~~~-~g~~~ 116 (503)
T KOG2550|consen 54 KLTRNITLNTPLVSSP----------------MDTVTESEMAIAMALLGGIGFIHHNCTPEDQADMVRRVKNYE-NGFIN 116 (503)
T ss_pred hhhhcccccCceeccC----------------CcccchhHHHHHHHhcCCceeeecCCCHHHHHHHHHHHHHhh-ccccc
Confidence 3556667777888864 4578889888777631 11111111 1112333332 11123
Q ss_pred ceEEeCCCCCHHHHHHHHh-cCCceEEEeccCcchhhhhhhcccccccccCCCCceeeeecHHHHHHHHHhccCCCCCCc
Q 016003 107 LVMHVEPSCSLLEAMDLML-GGAQNLVVPIKNRLSIKRKQQQKLSSSSLTNHNGREFCWLTQEDIIRFILSSISLFSPIP 185 (397)
Q Consensus 107 ~~~~V~~~~sL~~al~~m~-~g~~r~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IITq~DIi~~l~~~~~~l~~l~ 185 (397)
.++...|.+++-++++... +|+..++|..+.. -+++++|+||-+|+ +|+-++
T Consensus 117 ~p~v~sp~~tvg~v~~~k~~~gF~g~pvTe~g~------------------~~~KLvG~vtsrdi-~f~~~~-------- 169 (503)
T KOG2550|consen 117 NPIVISPTTTVGEVKEAKEKHGFSGIPVTEDGK------------------RGSKLVGIITSRDI-QFLEDN-------- 169 (503)
T ss_pred CCcccCCcccchhhhhhcccccccccccccCCc------------------ccceeEEEEehhhh-hhhhcc--------
Confidence 3677899999999999777 7888887765432 23588999999997 676322
Q ss_pred cCCccccCCCCcCeEEEeCCCcHHHHHHHHHhcCCCCCEEEEEcCCCcEEEeeccCcccC
Q 016003 186 ALSIDSLGIISTDVVAVDYHSPASLALEAISRSLFDQTSVAVVDSDGFLIGEISPSTLGC 245 (397)
Q Consensus 186 ~~ti~~L~~~~~~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~is~~dl~~ 245 (397)
...+++ +|++..++...+.++.++=+.+.++.- +.+||||++|++|.+|+.+||++
T Consensus 170 ~~~~~~--vmt~~~~~~~~gi~l~~~neiL~~~kk--Gkl~iv~~~gelva~~~rtDl~k 225 (503)
T KOG2550|consen 170 SLLVSD--VMTKNPVTGAQGITLKEANEILKKIKK--GKLPVVDDKGELVAMLSRTDLMK 225 (503)
T ss_pred cchhhh--hcccccccccccccHHHHHHHHHhhhc--CCcceeccCCceeeeeehhhhhh
Confidence 233343 788877999999999999999999877 99999999999999999999977
|
|
| >cd04597 CBS_pair_DRTGG_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream | Back alignment and domain information |
|---|
Probab=97.91 E-value=1.8e-05 Score=65.77 Aligned_cols=54 Identities=24% Similarity=0.314 Sum_probs=46.4
Q ss_pred CCccccCCCCcCeEEEeCCCcHHHHHHHHHhcCCCCCEEEEEcCCCcEEEeeccCccc
Q 016003 187 LSIDSLGIISTDVVAVDYHSPASLALEAISRSLFDQTSVAVVDSDGFLIGEISPSTLG 244 (397)
Q Consensus 187 ~ti~~L~~~~~~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~is~~dl~ 244 (397)
.++++ +|.+++.++.+++++.+|++.|...++ ..+||+|++|+++|+||..||.
T Consensus 58 ~~v~d--im~~~~~~v~~~~~l~~a~~~~~~~~~--~~lpVvd~~~~l~Givt~~dl~ 111 (113)
T cd04597 58 PRVRD--VINRKPVTARPNDPLREALNLMHEHNI--RTLPVVDDDGTPAGIITLLDLA 111 (113)
T ss_pred hhHHH--hcCCCCCEECCcCcHHHHHHHHHHcCC--CEEEEECCCCeEEEEEEHHHhh
Confidence 34555 788899999999999999999999988 9999999999999997755543
|
The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. |
| >COG2239 MgtE Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.00016 Score=74.37 Aligned_cols=118 Identities=18% Similarity=0.192 Sum_probs=99.0
Q ss_pred cchhhhhhcCCCCeEEEeCChhHHHHHHHHhhC-----CCceEEEEccCCCCCCCCCCCCCCCeEEEEEehhHHHHHHhh
Q 016003 7 ADEVSDLCLGKPALRALSISAAIADALSALKNS-----DESFISVWDCNCCSNHRKLGDACECQCVGKVCMVDVICYLCK 81 (397)
Q Consensus 7 ~~~v~dl~~~k~~li~v~~~~tv~~Al~~L~~~-----~I~s~PV~d~~~~~~~~~~~~~~~~~~vGiv~~~Dil~~l~~ 81 (397)
..+++-+| ..+.++++++.|+.+|+..+.+. .+..+-|+|. +++++|+++.++++..
T Consensus 131 e~taG~~M--t~e~v~l~~~~Tv~~al~~ir~~~~~~e~~~~lyVvD~-------------~~~L~Gvvsl~~Ll~a--- 192 (451)
T COG2239 131 EDTAGRIM--TTEFVTLPEDVTVDEALDRIRERAEDAETIYYLYVVDE-------------KGKLLGVVSLRDLLTA--- 192 (451)
T ss_pred hhhhhccc--eeeeEEeccCcCHHHHHHHHHHhcccccccceEEEECC-------------ccceEEEeeHHHHhcC---
Confidence 45677777 57899999999999999999954 5788999996 4689999999999832
Q ss_pred cCCCCChhhhhcCChhhhccCCCCCceEEeCCCCCHHHHHHHHh-cCCceEEEeccCcchhhhhhhcccccccccCCCCc
Q 016003 82 DSNSLSPSLALKQPVSVLLPQLLPPLVMHVEPSCSLLEAMDLML-GGAQNLVVPIKNRLSIKRKQQQKLSSSSLTNHNGR 160 (397)
Q Consensus 82 ~~~l~~~~~~~~~~V~~lm~~~~~~~~~~V~~~~sL~~al~~m~-~g~~r~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (397)
..+.+++++|... ++.|.+++...++..+|. ++.-.+||++++ ++
T Consensus 193 ---------~~~~~i~~im~~~----~~~V~~~~dqeevA~~~~~ydl~a~PVVd~~---------------------~~ 238 (451)
T COG2239 193 ---------EPDELLKDLMEDD----VVSVLADDDQEEVARLFEKYDLLAVPVVDED---------------------NR 238 (451)
T ss_pred ---------CcHhHHHHHhccc----ceeecccCCHHHHHHHHHHhCCeecceECCC---------------------Cc
Confidence 2246799999755 899999999999999999 788888888643 57
Q ss_pred eeeeecHHHHHHHHHh
Q 016003 161 EFCWLTQEDIIRFILS 176 (397)
Q Consensus 161 ~~~IITq~DIi~~l~~ 176 (397)
.+|+||+.|++.-+-+
T Consensus 239 LiG~itiDDiidvi~e 254 (451)
T COG2239 239 LIGIITIDDIIDVIEE 254 (451)
T ss_pred eeeeeeHHHHHHHHHH
Confidence 8999999999998875
|
|
| >KOG0474 consensus Cl- channel CLC-7 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.69 E-value=6e-05 Score=78.42 Aligned_cols=154 Identities=16% Similarity=0.113 Sum_probs=95.6
Q ss_pred CCCCcCeEEEeCCCcHHHHHHHHHhcCCCCCEEEEEcCC-----CcEEEeeccCcccCcchhHHHHHhhcChhhhhhh--
Q 016003 193 GIISTDVVAVDYHSPASLALEAISRSLFDQTSVAVVDSD-----GFLIGEISPSTLGCCDETVAAAITTLSAGDLMAY-- 265 (397)
Q Consensus 193 ~~~~~~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~-----g~lvG~is~~dl~~~~~~~~~~~~~ls~~Dl~~~-- 265 (397)
++|+++|++++.-+.+....+.+..... .|.||||+. +++.|+|=.++|....++ +-++.-
T Consensus 586 ev~~~pvi~l~~~ekV~~Iv~vLk~t~H--ngFPVvd~~~~~~~~~l~GlILRshl~vlL~~----------~~f~~~~~ 653 (762)
T KOG0474|consen 586 EVMSKPVICLNRVEKVAVIVDVLKSTNH--NGFPVVDEPPSNEAGRLHGLILRSHLLVLLKK----------RVFVEESR 653 (762)
T ss_pred hhccCCeEEEechhhHHHHHHHHHhcCc--CCCccccCCCCccchhhhHHHHHHHHHHHHHh----------hhhhccCc
Confidence 3899999999999999999999999877 999999973 477888655444432211 111100
Q ss_pred hccCCCCchhHHHHHHHhhhcchhhhhhhhccccCCCCCCCCCCCCCccchhhhccccCCCccccccchhhhhcCCccEE
Q 016003 266 IDCGGPPEDLVRVVKERLKDKGLEGMLEHFDMSSSLMPYLSTSSSSDEESTATSKLTRSGKHSRSMSYSARMVRRAEAIV 345 (397)
Q Consensus 266 ~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it 345 (397)
..++.|. +..-.+.+ ++. ..|+ +.+- .-+++|. .... .....|...++|
T Consensus 654 ~~~~~~~-------------~~~~~~~d-~a~---r~~~---i~dv-~lt~~e~----~~yv------Dl~p~~n~sPyt 702 (762)
T KOG0474|consen 654 STFDLPV-------------RRKFTFRD-FAK---REPS---IEDV-HLTSEEM----EMYV------DLHPFMNPSPYT 702 (762)
T ss_pred cccCcch-------------hhcCCHHH-hhh---cCCc---hhhh-hcchHhH----hhcc------ccccccCCCCcc
Confidence 0000000 00000000 010 0000 0000 0000000 0000 011256788999
Q ss_pred eCCCCcHHHHHHHHHHcCCcEEEEEcCCCcEEEEEehHHHHHHH
Q 016003 346 CHPTSSLMAVMIQAIAHRVTYVWVIEDDCTLTGIVTFSDLLKVF 389 (397)
Q Consensus 346 ~~~~~sl~~v~~~m~~~~i~rl~VVd~~~~lvGvVt~~DIl~~l 389 (397)
+.+++++..+...+.+-+.+|+.||+..++.+|++|+.|+.++=
T Consensus 703 V~~~mSl~k~~~lFR~lGLRhLlVv~~~~~~~gilTR~D~~~~~ 746 (762)
T KOG0474|consen 703 VPETMSLAKAFILFRQLGLRHLLVVPKTNRVVGILTRKDLARYR 746 (762)
T ss_pred cCcccchHHHHHHHHHhcceeEEEecCCCceeEEEehhhhhhHH
Confidence 99999999999999999999999999999999999999999764
|
|
| >COG4535 CorC Putative Mg2+ and Co2+ transporter CorC [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.00023 Score=66.21 Aligned_cols=116 Identities=18% Similarity=0.266 Sum_probs=95.2
Q ss_pred cCeEEEeCCCcHHHHHHHHHhcCCCCCEEEEEcCCC-cEEEeeccCcccCcchhHHHHHhhcChhhhhhhhccCCCCchh
Q 016003 197 TDVVAVDYHSPASLALEAISRSLFDQTSVAVVDSDG-FLIGEISPSTLGCCDETVAAAITTLSAGDLMAYIDCGGPPEDL 275 (397)
Q Consensus 197 ~~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g-~lvG~is~~dl~~~~~~~~~~~~~ls~~Dl~~~~~~~~~~~~l 275 (397)
...+++..+.++.+++..|.+... |..||+.++. .+.|+ |-+.||+.|+....
T Consensus 77 SQM~~l~~~~~l~~~l~~iiesaH--SRfPVi~edkD~v~GI-------------------L~AKDLL~~~~~~~----- 130 (293)
T COG4535 77 SQMITLKRNQTLDECLDVIIESAH--SRFPVISEDKDHVEGI-------------------LLAKDLLPFMRSDA----- 130 (293)
T ss_pred HHheeccccCCHHHHHHHHHHhcc--ccCCcccCCchhhhhh-------------------hhHHHHHHHhcCCc-----
Confidence 569999999999999999999988 9999998754 88898 78899888542110
Q ss_pred HHHHHHHhhhcchhhhhhhhccccCCCCCCCCCCCCCccchhhhccccCCCccccccchhhhhcCCccEEeCCCCcHHHH
Q 016003 276 VRVVKERLKDKGLEGMLEHFDMSSSLMPYLSTSSSSDEESTATSKLTRSGKHSRSMSYSARMVRRAEAIVCHPTSSLMAV 355 (397)
Q Consensus 276 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~~~~sl~~v 355 (397)
+.|. + .-+-+|++.+...-.+...
T Consensus 131 -----------------------------------------~~F~------i---------~~lLRPav~VPESKrvd~l 154 (293)
T COG4535 131 -----------------------------------------EPFD------I---------KELLRPAVVVPESKRVDRL 154 (293)
T ss_pred -----------------------------------------cccc------H---------HHhcccceecccchhHHHH
Confidence 0000 0 0124588999999999999
Q ss_pred HHHHHHcCCcEEEEEcCCCcEEEEEehHHHHHHHHHHHh
Q 016003 356 MIQAIAHRVTYVWVIEDDCTLTGIVTFSDLLKVFRKHLE 394 (397)
Q Consensus 356 ~~~m~~~~i~rl~VVd~~~~lvGvVt~~DIl~~l~~~~~ 394 (397)
+..+..++.|---|||+=|-+-|+||..|||..++..++
T Consensus 155 LkeFR~~RnHMAIViDEfGgVsGLVTIEDiLEqIVGdIE 193 (293)
T COG4535 155 LKEFRSQRNHMAIVIDEFGGVSGLVTIEDILEQIVGDIE 193 (293)
T ss_pred HHHHHhhcCceEEEEeccCCeeeeEEHHHHHHHHhcccc
Confidence 999999999999999999999999999999999987765
|
|
| >PRK10070 glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.0011 Score=67.66 Aligned_cols=106 Identities=15% Similarity=0.130 Sum_probs=84.2
Q ss_pred EEeCChhHHHHHHHHhhCCCceEEEEccCCCCCCCCCCCCCCCeEEEEEehhHHHHHHhhcCCCCChhhhhcCChhhhcc
Q 016003 22 ALSISAAIADALSALKNSDESFISVWDCNCCSNHRKLGDACECQCVGKVCMVDVICYLCKDSNSLSPSLALKQPVSVLLP 101 (397)
Q Consensus 22 ~v~~~~tv~~Al~~L~~~~I~s~PV~d~~~~~~~~~~~~~~~~~~vGiv~~~Dil~~l~~~~~l~~~~~~~~~~V~~lm~ 101 (397)
...++.+..+|++.|.+++..++.|+|.. ++++|+++..++..+..++ .++.+.+.
T Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~g~~~~~~~~~~~~~~-----------~~~~~~~~ 344 (400)
T PRK10070 289 RKTPGFGPRSALKLLQDEDREYGYVIERG-------------NKFVGAVSIDSLKTALTQQ-----------QGLDAALI 344 (400)
T ss_pred ccCCCCCHHHHHHHHHhcCCceEEEEcCC-------------CcEEEEEeHHHHHhhhhcC-----------Cchhhhhc
Confidence 44567789999999999999999999973 6899999999998775421 23555564
Q ss_pred CCCCCceEEeCCCCCHHHHHHHHhcCCceEEEeccCcchhhhhhhcccccccccCCCCceeeeecHHHHHHHHHh
Q 016003 102 QLLPPLVMHVEPSCSLLEAMDLMLGGAQNLVVPIKNRLSIKRKQQQKLSSSSLTNHNGREFCWLTQEDIIRFILS 176 (397)
Q Consensus 102 ~~~~~~~~~V~~~~sL~~al~~m~~g~~r~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IITq~DIi~~l~~ 176 (397)
.. +.++.++++|.+++..+......++|+++ ++...|+||..++++.+.+
T Consensus 345 ~~----~~~~~~~~~~~~~~~~~~~~~~~~~v~~~---------------------~~~~~g~~~~~~~~~~~~~ 394 (400)
T PRK10070 345 DA----PLAVDAQTPLSELLSHVGQAPCAVPVVDE---------------------DQQYVGIISKGMLLRALDR 394 (400)
T ss_pred cC----CceeCCCCCHHHHHHHHHhCCCcEEEECC---------------------CCcEEEEEEHHHHHHHHHh
Confidence 33 78899999999999999854445777753 2567899999999999864
|
|
| >TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.0013 Score=66.30 Aligned_cols=106 Identities=17% Similarity=0.144 Sum_probs=85.2
Q ss_pred EEEeCChhHHHHHHHHhhCCCceEEEEccCCCCCCCCCCCCCCCeEEEEEehhHHHHHHhhcCCCCChhhhhcCChhhhc
Q 016003 21 RALSISAAIADALSALKNSDESFISVWDCNCCSNHRKLGDACECQCVGKVCMVDVICYLCKDSNSLSPSLALKQPVSVLL 100 (397)
Q Consensus 21 i~v~~~~tv~~Al~~L~~~~I~s~PV~d~~~~~~~~~~~~~~~~~~vGiv~~~Dil~~l~~~~~l~~~~~~~~~~V~~lm 100 (397)
+...++.+..++++.|..+++.++.|+|. ++++.|.++..++..|+... ..+.+.+
T Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~g~~~~~~~~~~~~~~-----------~~~~~~~ 308 (363)
T TIGR01186 253 ITKTADKGPRSALQLMRDERVDSLYVVDR-------------QNKLVGVVDVESIKQARKKA-----------QGLQDVL 308 (363)
T ss_pred eeecCCCCHHHHHHHHHhcCCceEEEEcC-------------CCCEEEEEeHHHHHHHhhcC-----------Cchhhhh
Confidence 45666778999999999999999999996 46899999999998886532 2356666
Q ss_pred cCCCCCceEEeCCCCCHHHHHHHHhc-CCceEEEeccCcchhhhhhhcccccccccCCCCceeeeecHHHHHHHHHh
Q 016003 101 PQLLPPLVMHVEPSCSLLEAMDLMLG-GAQNLVVPIKNRLSIKRKQQQKLSSSSLTNHNGREFCWLTQEDIIRFILS 176 (397)
Q Consensus 101 ~~~~~~~~~~V~~~~sL~~al~~m~~-g~~r~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IITq~DIi~~l~~ 176 (397)
... +.++.++++|.+++..|.+ +.. ++|++++ ++..|+||..++++.+..
T Consensus 309 ~~~----~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~---------------------~~~~g~i~~~~~~~~~~~ 359 (363)
T TIGR01186 309 IDD----IYTVDAGTLLRETVRKVLKAGIK-VPVVDED---------------------QRLVGIVTRGSLVDALYD 359 (363)
T ss_pred ccC----CceECCCCcHHHHHHHHHhCCCC-EEEECCC---------------------CcEEEEEEHHHHHHHHHh
Confidence 433 6789999999999999994 544 8887532 467899999999999875
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact |
| >smart00116 CBS Domain in cystathionine beta-synthase and other proteins | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.00031 Score=47.30 Aligned_cols=47 Identities=26% Similarity=0.273 Sum_probs=42.3
Q ss_pred eEEEeCChhHHHHHHHHhhCCCceEEEEccCCCCCCCCCCCCCCCeEEEEEehhHHHHHH
Q 016003 20 LRALSISAAIADALSALKNSDESFISVWDCNCCSNHRKLGDACECQCVGKVCMVDVICYL 79 (397)
Q Consensus 20 li~v~~~~tv~~Al~~L~~~~I~s~PV~d~~~~~~~~~~~~~~~~~~vGiv~~~Dil~~l 79 (397)
.+++++++++.++++.|.++++..+||++.+ ++++|+++..|++..+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-------------~~~~g~i~~~~l~~~~ 48 (49)
T smart00116 2 VVTVSPDTTLEEALELLREHGIRRLPVVDEE-------------GRLVGIVTRRDIIKAL 48 (49)
T ss_pred ceEecCCCcHHHHHHHHHHhCCCcccEECCC-------------CeEEEEEEHHHHHHhh
Confidence 5778999999999999999999999999963 5899999999998764
|
Domain present in all 3 forms of cellular life. Present in two copies in inosine monophosphate dehydrogenase, of which one is disordered in the crystal structure [3]. A number of disease states are associated with CBS-containing proteins including homocystinuria, Becker's and Thomsen disease. |
| >COG4536 CorB Putative Mg2+ and Co2+ transporter CorB [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.0013 Score=65.15 Aligned_cols=130 Identities=16% Similarity=0.298 Sum_probs=100.8
Q ss_pred ccCCccccCCCC--cCeEEEeCCCcHHHHHHHHHhcCCCCCEEEEEcCC-CcEEEeeccCcccCcchhHHHHHhhcChhh
Q 016003 185 PALSIDSLGIIS--TDVVAVDYHSPASLALEAISRSLFDQTSVAVVDSD-GFLIGEISPSTLGCCDETVAAAITTLSAGD 261 (397)
Q Consensus 185 ~~~ti~~L~~~~--~~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~-g~lvG~is~~dl~~~~~~~~~~~~~ls~~D 261 (397)
..-+++| +|. .++..+..+.|..+.++.+..... +.+|+-.++ ..++|+ |-.+|
T Consensus 198 e~~tV~D--IMvpR~~i~~id~d~~~e~iv~ql~~s~H--tRiplyr~~~DnIiGv-------------------lh~r~ 254 (423)
T COG4536 198 ENLTVSD--IMVPRNEIIGIDIDDPWEEIVRQLLHSPH--TRIPLYRDDLDNIIGV-------------------LHVRD 254 (423)
T ss_pred ccceeee--eeccccceeeecCCCCHHHHHHHHhhCCC--CceeeecCChhHhhhh-------------------hhHHH
Confidence 3556666 576 469999999999999999999888 999998764 368897 67777
Q ss_pred hhhhhccCCCCchhHHHHHHHhhhcchhhhhhhhccccCCCCCCCCCCCCCccchhhhccccCCCccccccchhhhhcCC
Q 016003 262 LMAYIDCGGPPEDLVRVVKERLKDKGLEGMLEHFDMSSSLMPYLSTSSSSDEESTATSKLTRSGKHSRSMSYSARMVRRA 341 (397)
Q Consensus 262 l~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (397)
+.+++... + .+.. +++ ...-.
T Consensus 255 llr~l~e~-----------------~------~~~k-------------------~d~-----------------~~~a~ 275 (423)
T COG4536 255 LLRLLNEK-----------------N------EFTK-------------------EDI-----------------LRAAD 275 (423)
T ss_pred HHHHhhcc-----------------C------cccH-------------------hHH-----------------HHHhc
Confidence 77643210 0 0000 000 00134
Q ss_pred ccEEeCCCCcHHHHHHHHHHcCCcEEEEEcCCCcEEEEEehHHHHHHHHHHHhhh
Q 016003 342 EAIVCHPTSSLMAVMIQAIAHRVTYVWVIEDDCTLTGIVTFSDLLKVFRKHLETM 396 (397)
Q Consensus 342 ~~it~~~~~sl~~v~~~m~~~~i~rl~VVd~~~~lvGvVt~~DIl~~l~~~~~~~ 396 (397)
++..++..++|..-+.+|.++|-|-=-|||+=|.+.|+||+.|||..++..++++
T Consensus 276 epyFVPe~Tpl~~QL~~F~~~k~hialVVDEYG~i~GLVTLEDIlEEIVGdftde 330 (423)
T COG4536 276 EPYFVPEGTPLSDQLVAFQRNKKHIALVVDEYGDIQGLVTLEDILEEIVGDFTDE 330 (423)
T ss_pred CCeecCCCCcHHHHHHHHHHhcceEEEEEeccCcEEeeeeHHHHHHHHhcccccc
Confidence 7899999999999999999999999999999999999999999999999877643
|
|
| >COG4535 CorC Putative Mg2+ and Co2+ transporter CorC [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.00055 Score=63.77 Aligned_cols=155 Identities=16% Similarity=0.147 Sum_probs=110.1
Q ss_pred cchhhhhhcCCCCeEEEeCChhHHHHHHHHhhCCCceEEEEccCCCCCCCCCCCCCCCeEEEEEehhHHHHHHhhcCCCC
Q 016003 7 ADEVSDLCLGKPALRALSISAAIADALSALKNSDESFISVWDCNCCSNHRKLGDACECQCVGKVCMVDVICYLCKDSNSL 86 (397)
Q Consensus 7 ~~~v~dl~~~k~~li~v~~~~tv~~Al~~L~~~~I~s~PV~d~~~~~~~~~~~~~~~~~~vGiv~~~Dil~~l~~~~~l~ 86 (397)
...|+|+|.....+++++.+.++.+-+..+.+..-+.-||...+ ++.+.||+-..|++.|+..+...
T Consensus 66 dl~vrDiMIPRSQM~~l~~~~~l~~~l~~iiesaHSRfPVi~ed------------kD~v~GIL~AKDLL~~~~~~~~~- 132 (293)
T COG4535 66 DLRVRDIMIPRSQMITLKRNQTLDECLDVIIESAHSRFPVISED------------KDHVEGILLAKDLLPFMRSDAEP- 132 (293)
T ss_pred HhhHhhhcccHHHheeccccCCHHHHHHHHHHhccccCCcccCC------------chhhhhhhhHHHHHHHhcCCccc-
Confidence 46799999988889999999999999999999999999999864 57899999999999998764321
Q ss_pred ChhhhhcCChhhhccCCCCCceEEeCCCCCHHHHHHHHh-cCCceEEEeccCcchhhhhhhcccccccccCCCCceeeee
Q 016003 87 SPSLALKQPVSVLLPQLLPPLVMHVEPSCSLLEAMDLML-GGAQNLVVPIKNRLSIKRKQQQKLSSSSLTNHNGREFCWL 165 (397)
Q Consensus 87 ~~~~~~~~~V~~lm~~~~~~~~~~V~~~~sL~~al~~m~-~g~~r~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~II 165 (397)
-.+.+++. |.+.|...-.|...++-|- +..|=..|++.= |..-|.|
T Consensus 133 -------F~i~~lLR-----Pav~VPESKrvd~lLkeFR~~RnHMAIViDEf---------------------GgVsGLV 179 (293)
T COG4535 133 -------FDIKELLR-----PAVVVPESKRVDRLLKEFRSQRNHMAIVIDEF---------------------GGVSGLV 179 (293)
T ss_pred -------ccHHHhcc-----cceecccchhHHHHHHHHHhhcCceEEEEecc---------------------CCeeeeE
Confidence 23566663 3567777888888888887 565555555421 3566799
Q ss_pred cHHHHHHHHHhcc-CCCCCCccCCccccCCCCcCeEEEeCCCcHHH
Q 016003 166 TQEDIIRFILSSI-SLFSPIPALSIDSLGIISTDVVAVDYHSPASL 210 (397)
Q Consensus 166 Tq~DIi~~l~~~~-~~l~~l~~~ti~~L~~~~~~v~tv~~~~~~~~ 210 (397)
|-+||+.-+..-+ +++..--...|.. ..+.-++|..=+++.+
T Consensus 180 TIEDiLEqIVGdIEDE~Deee~~dI~~---ls~~~~~VrALT~Ied 222 (293)
T COG4535 180 TIEDILEQIVGDIEDEYDEEEDADIRQ---LSRHTWRVRALTEIED 222 (293)
T ss_pred EHHHHHHHHhcccccccchhhhhhhHh---hcCCceEEEecccHHH
Confidence 9999998886432 2222111111222 2344566666666543
|
|
| >KOG0474 consensus Cl- channel CLC-7 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.00074 Score=70.56 Aligned_cols=136 Identities=18% Similarity=0.155 Sum_probs=97.3
Q ss_pred ccccchhhhhhcCCCCeEEEeCChhHHHHHHHHhhCCCceEEEEccCCCCCCCCCCCCCCCeEEEEEehhHHHHHHhhc-
Q 016003 4 SLLADEVSDLCLGKPALRALSISAAIADALSALKNSDESFISVWDCNCCSNHRKLGDACECQCVGKVCMVDVICYLCKD- 82 (397)
Q Consensus 4 ~~~~~~v~dl~~~k~~li~v~~~~tv~~Al~~L~~~~I~s~PV~d~~~~~~~~~~~~~~~~~~vGiv~~~Dil~~l~~~- 82 (397)
.+++.+++|+|. +++++++.-+.++...++|...+--+-||+|.... + ..+++-|+|=..-++..|.+.
T Consensus 578 ~mr~L~a~ev~~--~pvi~l~~~ekV~~Iv~vLk~t~HngFPVvd~~~~-~-------~~~~l~GlILRshl~vlL~~~~ 647 (762)
T KOG0474|consen 578 YMRNLTAGEVMS--KPVICLNRVEKVAVIVDVLKSTNHNGFPVVDEPPS-N-------EAGRLHGLILRSHLLVLLKKRV 647 (762)
T ss_pred HhhhhhHhhhcc--CCeEEEechhhHHHHHHHHHhcCcCCCccccCCCC-c-------cchhhhHHHHHHHHHHHHHhhh
Confidence 356778999994 58999999999999999999999999999996421 0 015788988888888766531
Q ss_pred ---C---CC--CC------hhhh-----------------hcCChhhhccCCCCCceEEeCCCCCHHHHHHHHh-cCCce
Q 016003 83 ---S---NS--LS------PSLA-----------------LKQPVSVLLPQLLPPLVMHVEPSCSLLEAMDLML-GGAQN 130 (397)
Q Consensus 83 ---~---~l--~~------~~~~-----------------~~~~V~~lm~~~~~~~~~~V~~~~sL~~al~~m~-~g~~r 130 (397)
+ +. .. .+.+ +-.+...+|.. .+++|.+++|+..+..+|- -|.|+
T Consensus 648 f~~~~~~~~~~~~~~~~~~~d~a~r~~~i~dv~lt~~e~~~yvDl~p~~n~----sPytV~~~mSl~k~~~lFR~lGLRh 723 (762)
T KOG0474|consen 648 FVEESRSTFDLPVRRKFTFRDFAKREPSIEDVHLTSEEMEMYVDLHPFMNP----SPYTVPETMSLAKAFILFRQLGLRH 723 (762)
T ss_pred hhccCccccCcchhhcCCHHHhhhcCCchhhhhcchHhHhhccccccccCC----CCcccCcccchHHHHHHHHHhccee
Confidence 0 00 00 0000 01122223332 2899999999999999998 59999
Q ss_pred EEEeccCcchhhhhhhcccccccccCCCCceeeeecHHHHHHHH
Q 016003 131 LVVPIKNRLSIKRKQQQKLSSSSLTNHNGREFCWLTQEDIIRFI 174 (397)
Q Consensus 131 ~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IITq~DIi~~l 174 (397)
++|+... +...||+|+.|+.+|=
T Consensus 724 LlVv~~~---------------------~~~~gilTR~D~~~~~ 746 (762)
T KOG0474|consen 724 LLVVPKT---------------------NRVVGILTRKDLARYR 746 (762)
T ss_pred EEEecCC---------------------CceeEEEehhhhhhHH
Confidence 9887532 2347899999999773
|
|
| >KOG0475 consensus Cl- channel CLC-3 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.61 E-value=0.0067 Score=63.67 Aligned_cols=135 Identities=15% Similarity=0.105 Sum_probs=88.1
Q ss_pred CeEEEeCC-CcHHHHHHHHHhcCCCCCEEEEEcC--CCcEEEeeccCcccCcchhHHHHHhhcChhhhhhhhccCCCCch
Q 016003 198 DVVAVDYH-SPASLALEAISRSLFDQTSVAVVDS--DGFLIGEISPSTLGCCDETVAAAITTLSAGDLMAYIDCGGPPED 274 (397)
Q Consensus 198 ~v~tv~~~-~~~~~a~~~m~~~~i~~s~vpVVd~--~g~lvG~is~~dl~~~~~~~~~~~~~ls~~Dl~~~~~~~~~~~~ 274 (397)
...+++.+ .++.|...+|.+... ++.|||=+ ...++|+|.++||.-.- +++++...+.-..
T Consensus 557 ~L~~i~~~s~tl~~le~~~~~t~~--sgfpvvl~~~sq~lvGfv~rr~l~~~i---------~~ar~~q~~~~~~----- 620 (696)
T KOG0475|consen 557 CLIVITQDSMTLEDLESLMEDTDF--SGFPVVLSEDSQRLVGFVLRRNLFLAI---------LNARKIQSFIVTT----- 620 (696)
T ss_pred hheeccccceeHHHHHHHHhhccc--CCceEEEccccceeEEEEchHHHHHHH---------hhhccccccceec-----
Confidence 35666655 899999999999988 99999844 35999998766665422 3333333321100
Q ss_pred hHHHHHHHhhhcchhhhhhhhccccCCCCCCCCCCCCCccchhhhccccCCCccccccchhhhhcCCccEEeCCCCcHHH
Q 016003 275 LVRVVKERLKDKGLEGMLEHFDMSSSLMPYLSTSSSSDEESTATSKLTRSGKHSRSMSYSARMVRRAEAIVCHPTSSLMA 354 (397)
Q Consensus 275 l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~~~~sl~~ 354 (397)
.+ .+.+ +.|. . ..+ .+ ...++ +.++...++|+....+...
T Consensus 621 ------------~~-----~f~~---~~~~----~--~~~--~~----~~~~l--------k~il~~tp~tv~d~tp~~~ 660 (696)
T KOG0475|consen 621 ------------SI-----YFND---PSPS----A--VAG--IP----SRLDL--------KDILDMTPFTVTDLTPMET 660 (696)
T ss_pred ------------cc-----ccCC---CCcc----c--cCC--CC----CCcCc--------eeeccCCcccccccCcHHH
Confidence 00 0010 0000 0 000 00 00111 1346678999999999999
Q ss_pred HHHHHHHcCCcEEEEEcCCCcEEEEEehHHHHHHH
Q 016003 355 VMIQAIAHRVTYVWVIEDDCTLTGIVTFSDLLKVF 389 (397)
Q Consensus 355 v~~~m~~~~i~rl~VVd~~~~lvGvVt~~DIl~~l 389 (397)
+++++.+-+++.+-|..+ |++.|+||..|+|+..
T Consensus 661 v~~~F~~lg~~~~~v~~~-G~l~Giitkkd~l~~~ 694 (696)
T KOG0475|consen 661 VVDLFRKLGLRQILVTKN-GILLGIITKKDCLRHT 694 (696)
T ss_pred HHHHHHhhCceEEEEccC-CeeEeeeehHHHHHhh
Confidence 999999999999988765 9999999999999864
|
|
| >KOG0475 consensus Cl- channel CLC-3 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.93 E-value=0.058 Score=56.87 Aligned_cols=123 Identities=18% Similarity=0.185 Sum_probs=88.3
Q ss_pred cCCCCeEEEeCC-hhHHHHHHHHhhCCCceEEEEccCCCCCCCCCCCCCCCeEEEEEehhHHHHHHhh----cCCCCChh
Q 016003 15 LGKPALRALSIS-AAIADALSALKNSDESFISVWDCNCCSNHRKLGDACECQCVGKVCMVDVICYLCK----DSNSLSPS 89 (397)
Q Consensus 15 ~~k~~li~v~~~-~tv~~Al~~L~~~~I~s~PV~d~~~~~~~~~~~~~~~~~~vGiv~~~Dil~~l~~----~~~l~~~~ 89 (397)
...++++.++.+ .|+++...+|.+...+..||+-++. +++++|+++.+|+..-+.. ++...+..
T Consensus 553 ~~~~~L~~i~~~s~tl~~le~~~~~t~~sgfpvvl~~~-----------sq~lvGfv~rr~l~~~i~~ar~~q~~~~~~~ 621 (696)
T KOG0475|consen 553 RSESCLIVITQDSMTLEDLESLMEDTDFSGFPVVLSED-----------SQRLVGFVLRRNLFLAILNARKIQSFIVTTS 621 (696)
T ss_pred cCchhheeccccceeHHHHHHHHhhcccCCceEEEccc-----------cceeEEEEchHHHHHHHhhhccccccceecc
Confidence 333468888887 9999999999999999999997643 4799999999999876642 11111111
Q ss_pred hhhcC-------------ChhhhccCCCCCceEEeCCCCCHHHHHHHHh-cCCceEEEeccCcchhhhhhhccccccccc
Q 016003 90 LALKQ-------------PVSVLLPQLLPPLVMHVEPSCSLLEAMDLML-GGAQNLVVPIKNRLSIKRKQQQKLSSSSLT 155 (397)
Q Consensus 90 ~~~~~-------------~V~~lm~~~~~~~~~~V~~~~sL~~al~~m~-~g~~r~~V~~~~~~~~~~~~~~~~~~~~~~ 155 (397)
...+. ..+++|+.+ +.+|.-.++..-++.+|. -|++...|..
T Consensus 622 ~~f~~~~~~~~~~~~~~~~lk~il~~t----p~tv~d~tp~~~v~~~F~~lg~~~~~v~~-------------------- 677 (696)
T KOG0475|consen 622 IYFNDPSPSAVAGIPSRLDLKDILDMT----PFTVTDLTPMETVVDLFRKLGLRQILVTK-------------------- 677 (696)
T ss_pred cccCCCCccccCCCCCCcCceeeccCC----cccccccCcHHHHHHHHHhhCceEEEEcc--------------------
Confidence 11111 244555544 677888888888888887 4888877753
Q ss_pred CCCCceeeeecHHHHHHHH
Q 016003 156 NHNGREFCWLTQEDIIRFI 174 (397)
Q Consensus 156 ~~~~~~~~IITq~DIi~~l 174 (397)
.|+..|+||..|++++.
T Consensus 678 --~G~l~Giitkkd~l~~~ 694 (696)
T KOG0475|consen 678 --NGILLGIITKKDCLRHT 694 (696)
T ss_pred --CCeeEeeeehHHHHHhh
Confidence 25678899999999874
|
|
| >COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.98 E-value=0.1 Score=51.30 Aligned_cols=51 Identities=16% Similarity=0.320 Sum_probs=41.5
Q ss_pred CCccEEeCCCCcHHHHHHHHHHcCCcEEEEEcCCCcEEEEEehHHHHHHHHH
Q 016003 340 RAEAIVCHPTSSLMAVMIQAIAHRVTYVWVIEDDCTLTGIVTFSDLLKVFRK 391 (397)
Q Consensus 340 ~~~~it~~~~~sl~~v~~~m~~~~i~rl~VVd~~~~lvGvVt~~DIl~~l~~ 391 (397)
..++.++.+++.+.+.+..+.+.. ..++|||++++++|+|++..++.++..
T Consensus 334 ~~~~~~v~~d~~~~~~~~~~~~~~-~p~aVvde~~r~vG~i~~~~vl~aL~~ 384 (386)
T COG4175 334 IDDVLTVDADTPLSEILARIRQAP-CPVAVVDEDGRYVGIISRGELLEALAR 384 (386)
T ss_pred cccccccCccchHHHHHHHHhcCC-CceeEEcCCCcEEEEecHHHHHHHHhc
Confidence 446677888888888777666544 568999999999999999999999864
|
|
| >TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=94.97 E-value=0.039 Score=55.97 Aligned_cols=50 Identities=12% Similarity=0.247 Sum_probs=43.8
Q ss_pred CCccEEeCCCCcHHHHHHHHHHcCCcEEEEEcCCCcEEEEEehHHHHHHHHH
Q 016003 340 RAEAIVCHPTSSLMAVMIQAIAHRVTYVWVIEDDCTLTGIVTFSDLLKVFRK 391 (397)
Q Consensus 340 ~~~~it~~~~~sl~~v~~~m~~~~i~rl~VVd~~~~lvGvVt~~DIl~~l~~ 391 (397)
.....+++++++|.+++..+.+.. +-++|+|+ |+++|+|++.+++.++..
T Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~-~~~~g~~~~~~~~~~~~~ 381 (382)
T TIGR03415 332 EAAPTVINPDTLMRDVLAARHRTG-GAILLVEN-GRIVGVIGDDNIYHALLG 381 (382)
T ss_pred cccCcccCCCCcHHHHHHHHhcCC-CCeEEeeC-CeEEEEEeHHHHHHHHhc
Confidence 346789999999999999888776 45999997 999999999999999864
|
Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines. |
| >COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=88.90 E-value=0.67 Score=44.48 Aligned_cols=36 Identities=25% Similarity=0.276 Sum_probs=32.3
Q ss_pred HHHHHHHHHcCCcEEEEEcCCCcEEEEEehHHHHHH
Q 016003 353 MAVMIQAIAHRVTYVWVIEDDCTLTGIVTFSDLLKV 388 (397)
Q Consensus 353 ~~v~~~m~~~~i~rl~VVd~~~~lvGvVt~~DIl~~ 388 (397)
.+++..++..+..-+||||++|+++|.||+.|++..
T Consensus 273 ~~~ls~~~~~~~~~~~Vvd~~g~~~G~vt~~~l~~~ 308 (309)
T COG1125 273 RDALSDFLARGRSVLPVVDEDGRPLGTVTRADLLDE 308 (309)
T ss_pred HHHHHHHHhcCCceeEEECCCCcEeeEEEHHHHhhh
Confidence 337888889999999999999999999999999865
|
|
| >TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=87.38 E-value=0.46 Score=48.29 Aligned_cols=43 Identities=16% Similarity=0.229 Sum_probs=36.1
Q ss_pred cCeEEEeCCCcHHHHHHHHHhcCCCCCEEEEEcCCCcEEEeeccCcc
Q 016003 197 TDVVAVDYHSPASLALEAISRSLFDQTSVAVVDSDGFLIGEISPSTL 243 (397)
Q Consensus 197 ~~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~is~~dl 243 (397)
.++.++++++++.+++..+.+.+. .+||+|+ |+++|+|+..+|
T Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~v~~~-~~~~g~~~~~~~ 375 (382)
T TIGR03415 333 AAPTVINPDTLMRDVLAARHRTGG---AILLVEN-GRIVGVIGDDNI 375 (382)
T ss_pred ccCcccCCCCcHHHHHHHHhcCCC---CeEEeeC-CeEEEEEeHHHH
Confidence 468899999999999999988766 7999996 999999764333
|
Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines. |
| >COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=83.33 E-value=1.1 Score=44.38 Aligned_cols=42 Identities=43% Similarity=0.529 Sum_probs=35.9
Q ss_pred CcCeEEEeCCCcHHHHHHHHHhcCCCCCEEEEEcCCCcEEEeecc
Q 016003 196 STDVVAVDYHSPASLALEAISRSLFDQTSVAVVDSDGFLIGEISP 240 (397)
Q Consensus 196 ~~~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~is~ 240 (397)
...+.++.+++++.+.+..+.+... .+||||++|+++|+|+.
T Consensus 334 ~~~~~~v~~d~~~~~~~~~~~~~~~---p~aVvde~~r~vG~i~~ 375 (386)
T COG4175 334 IDDVLTVDADTPLSEILARIRQAPC---PVAVVDEDGRYVGIISR 375 (386)
T ss_pred cccccccCccchHHHHHHHHhcCCC---ceeEEcCCCcEEEEecH
Confidence 4467899999999988888887665 99999999999999653
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3ddj_A CBS domain-containing protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.80A {Sulfolobus solfataricus} SCOP: d.37.1.1 d.37.1.1 Length = 296 | Back alignment and structure |
|---|
Score = 60.2 bits (146), Expect = 2e-10
Identities = 33/243 (13%), Positives = 73/243 (30%), Gaps = 38/243 (15%)
Query: 165 LTQEDIIRFILSSISLFSPIPALSIDS----LGIISTDVVAVDYHSPASLALEAISRSLF 220
LT D++ + S L S + ++ + V V S A+ +
Sbjct: 65 LTTRDLLSTVESYCKDSCSQGDLYHISTTPIIDYMTPNPVTVYNTSDEFTAINIMVT--R 122
Query: 221 DQTSVAVVDSDGFLIGEISPSTLGCCDETVAAAITTLSAGDLMAYIDCGGPPEDLVRVVK 280
+ S+ VVD + +G ++ M+ E +
Sbjct: 123 NFGSLPVVDINDKPVGIVTEREF---LLLYKDLDEIFPVKVFMSTKVQTIYKEVRLDQAV 179
Query: 281 ERLKDKG------------LEGMLEHFDMSSSLMPYLSTSSSSDEESTATSKLTRSGKHS 328
+ + +G + G++ + + L+ + + K+
Sbjct: 180 KLMLRRGFRRLPVIDDDNKVVGIVTVVN----AIKQLAKAVDKLDPDYFYGKV------- 228
Query: 329 RSMSYSARMVRRAEAIVCHPTSSLMAVMIQAIAHRVTYVWVIEDDCTLTGIVTFSDLLKV 388
+ V + +S+ + I R+ + ++ D T+ GI+T DLL
Sbjct: 229 ------VKDVMVTNLVTIDELASVNRAAAEMIVKRIGSLLILNKDNTIRGIITERDLLIA 282
Query: 389 FRK 391
Sbjct: 283 LHH 285
|
| >3kh5_A Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, archaea, unknown function; HET: ADP AMP; 2.10A {Methanocaldococcus jannaschii} PDB: 3lfz_A* Length = 280 | Back alignment and structure |
|---|
Score = 52.8 bits (127), Expect = 5e-08
Identities = 39/306 (12%), Positives = 93/306 (30%), Gaps = 64/306 (20%)
Query: 108 VMHVEPSCSLLEAMDLMLGGAQNLVVPIKNRLSIKRKQQQKLSSSSLTNHNGREFC-WLT 166
++ V P+ ++ +A+ M + K + N + +T
Sbjct: 14 IVTVYPTTTIRKALMTMN--------------------ENKYRRLPVVNAGNNKVVGIIT 53
Query: 167 QEDIIRFILSSISLFSPIPALSIDSLG--------IISTDVVAVDYHSPASLALEAISRS 218
DI+ F+ + L I+ +V+ + ++ A+E
Sbjct: 54 SMDIVDFMGGGSKYNLIREKHERNFLAAINEPVREIMEENVITLKENADIDEAIETFLTK 113
Query: 219 LFDQTSVAVVDSDGFLIGEISPSTLGCCDETVAAAITTLSAGDLM----AYIDCGGPPED 274
+ +V+ + LI I+ + + D + P +
Sbjct: 114 --NVGGAPIVNDENQLISLITERDV--IRALLDKIDENEVIDDYITRDVIVAT----PGE 165
Query: 275 LVRVVKERLKDKG-----------LEGMLEHFDMSSSLMPYLSTSSSSDEESTATSKLTR 323
++ V + G L G++ D + L S +
Sbjct: 166 RLKDVARTMVRNGFRRLPVVSEGRLVGIITSTD----FIKLLG--------SDWAFNHMQ 213
Query: 324 SGKHSRSMSYSARMVRRAEAIVCHPTSSLMAVMIQAIAHRVTYVWVIEDDCTLTGIVTFS 383
+G + + + + I L + + + + + V++++ + GI+T
Sbjct: 214 TGNVREITNVRMEEIMKRDVITAKEGDKLKKIAEIMVTNDIGALPVVDENLRIKGIITEK 273
Query: 384 DLLKVF 389
D+LK F
Sbjct: 274 DVLKYF 279
|
| >2v8q_E 5'-AMP-activated protein kinase subunit gamma-1; phosphorylation, nucleotide-binding, serine/threonine-protei kinase, magnesium, CBS domain; HET: AMP; 2.10A {Rattus norvegicus} SCOP: d.37.1.1 d.37.1.1 PDB: 2v92_E* 2v9j_E* 2y8l_E* 2y8q_E* 2y94_E* 2ya3_E* Length = 330 | Back alignment and structure |
|---|
Score = 51.5 bits (123), Expect = 2e-07
Identities = 55/388 (14%), Positives = 116/388 (29%), Gaps = 111/388 (28%)
Query: 10 VSDLCLGKPALRALSISAAIADALSALKNSDESFISVWDCNCCSNHRKLGDACECQCVGK 69
DL L S + A AL + +WD S + VG
Sbjct: 37 CYDLIPTSSKLVVFDTSLQVKKAFFALVTNGVRAAPLWD----SKKQSF--------VGM 84
Query: 70 VCMVDVICYLCKDSNSLSPSLA-----LKQPVSVLLPQLLPPLVMHVEPSCSLLEAMDLM 124
+ + D I L + S + + + Q ++ + P+ SL +A+ +
Sbjct: 85 LTITDFINILHRYYKSALVQIYELEEHKIETWREVYLQDSFKPLVCISPNASLFDAVSSL 144
Query: 125 LG-GAQNLVVPIKNRLSIKRKQQQKLSSSSLTNHNGREFCWLTQEDIIRFILSSISLFSP 183
+ L V + +G LT + I++F+ I+ F
Sbjct: 145 IRNKIHRLPV--------------------IDPESGNTLYILTHKRILKFLKLFITEFPK 184
Query: 184 IPAL--SIDSLGIISTDVVAVDYHSPASLALEAISRSLFDQTSVAVVDSDGFLIGEISPS 241
+ S++ L I + +A+ +
Sbjct: 185 PEFMSKSLEELQIGTYANIAM-----------------------------------VRT- 208
Query: 242 TLGCCDETVAAAITTLSAGDLMAYIDCGGPPEDLVRVVKERLKDKGLEGMLEHFDMSSSL 301
V A+ + P VV E + + FD +
Sbjct: 209 -----TTPVYVAL------GIFVQHRVSALP-----VVDE---KGRVVDIYSKFD----V 245
Query: 302 MPYLSTSSSSDEESTATSKLTRSGKHSRSMSYSARMVRRAEAIVCHPTSSLMAVMIQAIA 361
+ + + ++ + + T L + + + C+ +L A++ + +
Sbjct: 246 INLAAEKTYNNLDVSVTKALQHRSHYFEGV------------LKCYLHETLEAIINRLVE 293
Query: 362 HRVTYVWVIEDDCTLTGIVTFSDLLKVF 389
V + V+++ + GIV+ SD+L+
Sbjct: 294 AEVHRLVVVDEHDVVKGIVSLSDILQAL 321
|
| >3t4n_C Nuclear protein SNF4; CBS domain, nucleotide binding, cytosol, protein binding; HET: ADP; 2.30A {Saccharomyces cerevisiae} PDB: 3tdh_C* 3te5_C* 2qlv_C Length = 323 | Back alignment and structure |
|---|
Score = 50.3 bits (120), Expect = 4e-07
Identities = 47/280 (16%), Positives = 87/280 (31%), Gaps = 25/280 (8%)
Query: 132 VVPIKNRLSIKR----KQQQKLSSSSLTNHNGREFC-WLTQEDIIRFILSSISLFSPIPA 186
++ + L +K+ Q + S+ L + F LT D I I S
Sbjct: 42 LIVLDTSLLVKKSLNVLLQNSIVSAPLWDSKTSRFAGLLTTTDFINVIQYYFSNPDKFEL 101
Query: 187 LSIDSLGIIST-------DVVAVDYHSPASLALEAISRSLFDQTS-VAVVDSDGFLIGEI 238
+ L + D + P+ EA + L ++ + ++D D EI
Sbjct: 102 VDKLQLDGLKDIERALGVDQLDTASIHPSRPLFEACLKMLESRSGRIPLIDQDEETHREI 161
Query: 239 SPSTLGCCDETVAAAITTLSAGDLMAYID--CGGPPEDLVRVVKERLKDKGLEGMLEHFD 296
S L A+ L I +++ ++ + +
Sbjct: 162 VVSVLTQYRILKFVALNCRETHFLKIPIGDLNIITQDNMKSCQMTTPVIDVIQMLTQG-R 220
Query: 297 MSSSLMP-------YLSTSSSSDEESTATSKLTRSGKHSRSMSYSARMVRRAEAIVCHPT 349
+SS +P ++ + D + S + R C
Sbjct: 221 VSS--VPIIDENGYLINVYEAYDVLGLIKGGIYNDLSLSVGEALMRRSDDFEGVYTCTKN 278
Query: 350 SSLMAVMIQAIAHRVTYVWVIEDDCTLTGIVTFSDLLKVF 389
L +M RV +V++D L G++T SD+LK
Sbjct: 279 DKLSTIMDNIRKARVHRFFVVDDVGRLVGVLTLSDILKYI 318
|
| >3t4n_C Nuclear protein SNF4; CBS domain, nucleotide binding, cytosol, protein binding; HET: ADP; 2.30A {Saccharomyces cerevisiae} PDB: 3tdh_C* 3te5_C* 2qlv_C Length = 323 | Back alignment and structure |
|---|
Score = 45.3 bits (107), Expect = 2e-05
Identities = 35/241 (14%), Positives = 70/241 (29%), Gaps = 35/241 (14%)
Query: 5 LLADEVSDLCLGKPALRALSISAAIADALSALKNSDESFISVWDCNCCSNHRKLGDACEC 64
L + D+ L L S + +L+ L + +WD +
Sbjct: 27 LNSKTSYDVLPVSYRLIVLDTSLLVKKSLNVLLQNSIVSAPLWD------------SKTS 74
Query: 65 QCVGKVCMVDVICYL------CKDSNSLSPSLALKQPVSVLLPQLLPPLVMHVEPSCSLL 118
+ G + D I + + + + PS L
Sbjct: 75 RFAGLLTTTDFINVIQYYFSNPDKFELVDKLQLDGLKDIERALGVDQLDTASIHPSRPLF 134
Query: 119 EAMDLMLGGAQNLVVPIKNRLSIKRKQQQKLSSSSLTNHNGREFCWLTQEDIIRFILSSI 178
EA ML +P+ H LTQ I++F+ +
Sbjct: 135 EACLKMLESRSG-RIPL--------------IDQDEETHREIVVSVLTQYRILKFVALNC 179
Query: 179 SLFSPIPALSIDSLGIISTDVVAVDYHSPASLALEAISRSLFDQTSVAVVDSDGFLIGEI 238
+ D I ++ + +P ++ +++ +SV ++D +G+LI
Sbjct: 180 RETHFLKIPIGDLNIITQDNMKSCQMTTPVIDVIQMLTQG--RVSSVPIIDENGYLINVY 237
Query: 239 S 239
Sbjct: 238 E 238
|
| >2qrd_G Protein C1556.08C; AMPK, ADP, ATP-binding, kinase, nucleotide-binding, serine/T protein kinase, transferase, CBS domain; HET: ADP ATP; 2.41A {Schizosaccharomyces pombe} PDB: 2qrc_G* 2qr1_G* 2qre_G* 2oox_G* 2ooy_G* Length = 334 | Back alignment and structure |
|---|
Score = 48.3 bits (115), Expect = 2e-06
Identities = 47/296 (15%), Positives = 90/296 (30%), Gaps = 54/296 (18%)
Query: 132 VVPIKNRLSIKRK----QQQKLSSSSLTNHNGREFC-WLTQEDIIRFILSSISLFS-PIP 185
++ L +K + S+ L + +F LT D + I S P
Sbjct: 34 LIVFDVTLFVKTSLSLLTLNNIVSAPLWDSEANKFAGLLTMADFVNVIKYYYQSSSFPEA 93
Query: 186 ALSIDSLGIIST-DVVAVDYHSPASLALEAISRSLFD---------QTSVAVVDSDGFLI 235
ID ++ +V P SL D + ++D DG
Sbjct: 94 IAEIDKFRLLGLREVERKIGAIPPETIYVHPMHSLMDACLAMSKSRARRIPLIDVDGETG 153
Query: 236 GEISPS---------TLGCCDETVAAAITTLSAGDLMAYID-CGGPPEDLVRVVKERLKD 285
E+ S + + A L+ + + + E V V + L +
Sbjct: 154 SEMIVSVLTQYRILKFISMNCKETAMLRVPLNQMTIGTWSNLATASMETKVYDVIKMLAE 213
Query: 286 KG------------LEGMLEHFDMSSSLMPYLSTSSSSDEESTATSKLTRSGKHSRSMSY 333
K L + E D +M + S+ + + L + + +
Sbjct: 214 KNISAVPIVNSEGTLLNVYESVD----VMHLIQDGDYSNLDLSVGEALLKRPANFDGV-- 267
Query: 334 SARMVRRAEAIVCHPTSSLMAVMIQAIAHRVTYVWVIEDDCTLTGIVTFSDLLKVF 389
C T L + RV ++V++++ L GI++ +D+L
Sbjct: 268 ----------HTCRATDRLDGIFDAIKHSRVHRLFVVDENLKLEGILSLADILNYI 313
|
| >2qrd_G Protein C1556.08C; AMPK, ADP, ATP-binding, kinase, nucleotide-binding, serine/T protein kinase, transferase, CBS domain; HET: ADP ATP; 2.41A {Schizosaccharomyces pombe} PDB: 2qrc_G* 2qr1_G* 2qre_G* 2oox_G* 2ooy_G* Length = 334 | Back alignment and structure |
|---|
Score = 41.4 bits (97), Expect = 4e-04
Identities = 30/190 (15%), Positives = 71/190 (37%), Gaps = 28/190 (14%)
Query: 60 DACECQCVGKVCMVDVICYLCKDSNSLSPSLALKQPVSVLLPQL---------LPPLVMH 110
D+ + G + M D + + S S A+ + L L +PP ++
Sbjct: 62 DSEANKFAGLLTMADFVNVIKYYYQSSSFPEAIAEIDKFRLLGLREVERKIGAIPPETIY 121
Query: 111 VEPSCSLLEAMDLMLGGAQNLVVPIKNRLSIKRKQQQKLSSSSLTNHNGREFCWLTQEDI 170
V P SL++A M ++ +P+ + LTQ I
Sbjct: 122 VHPMHSLMDACLAMSK-SRARRIPLI--------------DVDGETGSEMIVSVLTQYRI 166
Query: 171 IRFILSSISLFSPIPALSIDSLGIIS-TDVVAVDYHSPASLALEAISRSLFDQTSVAVVD 229
++FI + + + ++ + I + +++ + ++ ++ + ++V +V+
Sbjct: 167 LKFISMNCKETAMLRV-PLNQMTIGTWSNLATASMETKVYDVIKMLAE--KNISAVPIVN 223
Query: 230 SDGFLIGEIS 239
S+G L+
Sbjct: 224 SEGTLLNVYE 233
|
| >2nyc_A Nuclear protein SNF4; bateman2 domain, AMP kinase, protein binding; 1.90A {Saccharomyces cerevisiae} SCOP: d.37.1.1 PDB: 2nye_A Length = 144 | Back alignment and structure |
|---|
Score = 43.3 bits (103), Expect = 2e-05
Identities = 36/203 (17%), Positives = 60/203 (29%), Gaps = 73/203 (35%)
Query: 188 SIDSLGIIST-DVVAVDYHSPASLALEAISRSLFDQTSVAVVDSDGFLIGEISPSTLGCC 246
I L II+ ++ + +P ++ +++ +SV ++D +G+LI
Sbjct: 9 PIGDLNIITQDNMKSCQMTTPVIDVIQMLTQ--GRVSSVPIIDENGYLINVY-------- 58
Query: 247 DETVAAAITTLSAGDLMAYIDCGGPPEDLVRVVKERLKDKGLEGMLEHFDMSSSLMPYLS 306
A D++ I GG DL V E L
Sbjct: 59 -----------EAYDVLGLIK-GGIYNDLSLSVGEAL----------------------- 83
Query: 307 TSSSSDEESTATSKLTRSGKHSRSMSYSARMVRRAEAIVCHPTSSLMAVMIQAIAHRVTY 366
R C L +M RV
Sbjct: 84 ---------------------------MRRSDDFEGVYTCTKNDKLSTIMDNIRKARVHR 116
Query: 367 VWVIEDDCTLTGIVTFSDLLKVF 389
+V++D L G++T SD+LK
Sbjct: 117 FFVVDDVGRLVGVLTLSDILKYI 139
|
| >2yzq_A Putative uncharacterized protein PH1780; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; HET: SAM; 1.63A {Pyrococcus horikoshii} SCOP: d.37.1.1 d.37.1.1 Length = 282 | Back alignment and structure |
|---|
Score = 44.4 bits (105), Expect = 3e-05
Identities = 26/185 (14%), Positives = 57/185 (30%), Gaps = 19/185 (10%)
Query: 227 VVDSDGFLIGEISPSTLGCCDETVAAAITTLSAGDLMAYIDCGGPPEDLVRVVKERLKDK 286
VVDS G +G ++ + + + ++ + L
Sbjct: 96 VVDSKGKPVGILTVGDIIRRYFAKSEKYKGVEIEPYYQRYVSIVWEGTPLKAALKALLLS 155
Query: 287 G------------LEGMLEHFDMSSSLMPYLSTSSSSDEESTATSKLTRSGKHSRSMSYS 334
L G+++ D+ S+ S+ + S +
Sbjct: 156 NSMALPVVDSEGNLVGIVDETDLLRDSEIVRIMKSTELAASSEEEWILESHPTLLFEKFE 215
Query: 335 ARMVRRAEAIVC-------HPTSSLMAVMIQAIAHRVTYVWVIEDDCTLTGIVTFSDLLK 387
++ + A + P ++ V ++ + + + VI + L G++ DLLK
Sbjct: 216 LQLPNKPVAEIMTRDVIVATPHMTVHEVALKMAKYSIEQLPVIRGEGDLIGLIRDFDLLK 275
Query: 388 VFRKH 392
V K
Sbjct: 276 VLVKS 280
|
| >2ef7_A Hypothetical protein ST2348; CBS-domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.10A {Sulfolobus tokodaii} SCOP: d.37.1.1 Length = 133 | Back alignment and structure |
|---|
Score = 41.8 bits (99), Expect = 6e-05
Identities = 11/54 (20%), Positives = 22/54 (40%)
Query: 344 IVCHPTSSLMAVMIQAIAHRVTYVWVIEDDCTLTGIVTFSDLLKVFRKHLETMA 397
I S + + + ++ V++D L GI++ D+ + ETM
Sbjct: 78 ITIREDSPITGALALMRQFNIRHLPVVDDKGNLKGIISIRDITRAIDDMFETMG 131
|
| >3fv6_A YQZB protein; CBS domain dimer, metabolism regulator, central glycolytic G regulator, transcription; 1.95A {Bacillus subtilis} PDB: 3fwr_A* 3fws_A* Length = 159 | Back alignment and structure |
|---|
Score = 40.0 bits (94), Expect = 3e-04
Identities = 15/78 (19%), Positives = 30/78 (38%), Gaps = 3/78 (3%)
Query: 320 KLTRSGKHSRSMSYSARMVRRAEAIVCHPTSSLMAVMIQAIAHRVTYVWVIEDD---CTL 376
+ + + S+ M R VC +M + I ++ + VI+D +
Sbjct: 70 RASIGQQELTSVPVHIIMTRMPNITVCRREDYVMDIAKHLIEKQIDALPVIKDTDKGFEV 129
Query: 377 TGIVTFSDLLKVFRKHLE 394
G VT +++ K+ E
Sbjct: 130 IGRVTKTNMTKILVSLSE 147
|
| >1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154 | Back alignment and structure |
|---|
Score = 39.9 bits (92), Expect = 3e-04
Identities = 7/27 (25%), Positives = 16/27 (59%), Gaps = 4/27 (14%)
Query: 167 QEDIIRFILSSISLFSP--IPALSIDS 191
Q ++ + +S+ L++ PAL+I +
Sbjct: 20 QA--LKKLQASLKLYADDSAPALAIKA 44
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 397 | |||
| 3t4n_C | 323 | Nuclear protein SNF4; CBS domain, nucleotide bindi | 100.0 | |
| 3kh5_A | 280 | Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, a | 100.0 | |
| 2qrd_G | 334 | Protein C1556.08C; AMPK, ADP, ATP-binding, kinase, | 100.0 | |
| 2v8q_E | 330 | 5'-AMP-activated protein kinase subunit gamma-1; p | 100.0 | |
| 3ddj_A | 296 | CBS domain-containing protein; structural genomics | 100.0 | |
| 2yzq_A | 282 | Putative uncharacterized protein PH1780; sheet/hel | 100.0 | |
| 3ddj_A | 296 | CBS domain-containing protein; structural genomics | 99.88 | |
| 3kh5_A | 280 | Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, a | 99.88 | |
| 4esy_A | 170 | CBS domain containing membrane protein; structural | 99.86 | |
| 2yzq_A | 282 | Putative uncharacterized protein PH1780; sheet/hel | 99.85 | |
| 3t4n_C | 323 | Nuclear protein SNF4; CBS domain, nucleotide bindi | 99.83 | |
| 2v8q_E | 330 | 5'-AMP-activated protein kinase subunit gamma-1; p | 99.8 | |
| 2qrd_G | 334 | Protein C1556.08C; AMPK, ADP, ATP-binding, kinase, | 99.8 | |
| 3lv9_A | 148 | Putative transporter; CBS domain, PSI, MCSG, struc | 99.76 | |
| 3jtf_A | 129 | Magnesium and cobalt efflux protein; CBS domain, C | 99.75 | |
| 3lhh_A | 172 | CBS domain protein; structural genomics, PSI-2, pr | 99.75 | |
| 3i8n_A | 130 | Uncharacterized protein VP2912; APC64273.1, vibrio | 99.75 | |
| 3nqr_A | 127 | Magnesium and cobalt efflux protein CORC; structur | 99.75 | |
| 3k6e_A | 156 | CBS domain protein; streptococcus pneumoniae TIGR4 | 99.74 | |
| 3hf7_A | 130 | Uncharacterized CBS-domain protein; CSB-domain PAI | 99.74 | |
| 3kpb_A | 122 | Uncharacterized protein MJ0100; CBS domain, S-aden | 99.74 | |
| 2ef7_A | 133 | Hypothetical protein ST2348; CBS-domain, structura | 99.74 | |
| 3lfr_A | 136 | Putative metal ION transporter; CBS, AMP, PSI, MCS | 99.74 | |
| 4gqw_A | 152 | CBS domain-containing protein CBSX1, chloroplasti; | 99.73 | |
| 2nyc_A | 144 | Nuclear protein SNF4; bateman2 domain, AMP kinase, | 99.73 | |
| 4esy_A | 170 | CBS domain containing membrane protein; structural | 99.72 | |
| 3gby_A | 128 | Uncharacterized protein CT1051; CBS domain, struct | 99.72 | |
| 2yzi_A | 138 | Hypothetical protein PH0107; sheet/helix/sheet/she | 99.72 | |
| 2p9m_A | 138 | Hypothetical protein MJ0922; structural genomics, | 99.71 | |
| 3lqn_A | 150 | CBS domain protein; csgid, structural genomics, un | 99.71 | |
| 2uv4_A | 152 | 5'-AMP-activated protein kinase subunit gamma-1; t | 99.71 | |
| 3fhm_A | 165 | Uncharacterized protein ATU1752; CBS domain, proka | 99.71 | |
| 2rih_A | 141 | Conserved protein with 2 CBS domains; bateman doma | 99.71 | |
| 3fv6_A | 159 | YQZB protein; CBS domain dimer, metabolism regulat | 99.7 | |
| 3sl7_A | 180 | CBS domain-containing protein CBSX2; CBS-PAIR prot | 99.7 | |
| 3oco_A | 153 | Hemolysin-like protein containing CBS domains; str | 99.7 | |
| 3k6e_A | 156 | CBS domain protein; streptococcus pneumoniae TIGR4 | 99.69 | |
| 2o16_A | 160 | Acetoin utilization protein ACUB, putative; struct | 99.69 | |
| 1pbj_A | 125 | Hypothetical protein; structural genomics, domain, | 99.69 | |
| 3kxr_A | 205 | Magnesium transporter, putative; cystathionine bet | 99.68 | |
| 1y5h_A | 133 | Hypothetical protein RV2626C; CBS domain, unknown | 99.68 | |
| 3oi8_A | 156 | Uncharacterized protein; structural genomics, PSI- | 99.68 | |
| 1pvm_A | 184 | Conserved hypothetical protein TA0289; structural | 99.68 | |
| 2rc3_A | 135 | CBS domain; in SITU proteolysis, BR, structural ge | 99.68 | |
| 2emq_A | 157 | Hypothetical conserved protein; CBS domains, NPPSF | 99.68 | |
| 3k2v_A | 149 | Putative D-arabinose 5-phosphate isomerase; KPSF-l | 99.67 | |
| 3l2b_A | 245 | Probable manganase-dependent inorganic pyrophospha | 99.67 | |
| 3ctu_A | 156 | CBS domain protein; structural genomics, PSI-2, pr | 99.67 | |
| 1yav_A | 159 | Hypothetical protein BSU14130; cystathionine beta | 99.67 | |
| 1o50_A | 157 | CBS domain-containing predicted protein TM0935; CB | 99.67 | |
| 3ocm_A | 173 | Putative membrane protein; structural genomics, PS | 99.67 | |
| 1vr9_A | 213 | CBS domain protein/ACT domain protein; structural | 99.66 | |
| 3l2b_A | 245 | Probable manganase-dependent inorganic pyrophospha | 99.66 | |
| 2pfi_A | 164 | Chloride channel protein CLC-Ka; cystathionine bet | 99.66 | |
| 3i8n_A | 130 | Uncharacterized protein VP2912; APC64273.1, vibrio | 99.65 | |
| 3lv9_A | 148 | Putative transporter; CBS domain, PSI, MCSG, struc | 99.64 | |
| 3hf7_A | 130 | Uncharacterized CBS-domain protein; CSB-domain PAI | 99.64 | |
| 2d4z_A | 250 | Chloride channel protein; CLC chloride channel cyt | 99.64 | |
| 3lqn_A | 150 | CBS domain protein; csgid, structural genomics, un | 99.63 | |
| 4fry_A | 157 | Putative signal-transduction protein with CBS DOM; | 99.63 | |
| 2j9l_A | 185 | Chloride channel protein 5; ION channel, ION trans | 99.62 | |
| 3lhh_A | 172 | CBS domain protein; structural genomics, PSI-2, pr | 99.62 | |
| 3oco_A | 153 | Hemolysin-like protein containing CBS domains; str | 99.61 | |
| 2ef7_A | 133 | Hypothetical protein ST2348; CBS-domain, structura | 99.61 | |
| 2oux_A | 286 | Magnesium transporter; 10001B, structural genomics | 99.61 | |
| 3jtf_A | 129 | Magnesium and cobalt efflux protein; CBS domain, C | 99.61 | |
| 3ctu_A | 156 | CBS domain protein; structural genomics, PSI-2, pr | 99.6 | |
| 3nqr_A | 127 | Magnesium and cobalt efflux protein CORC; structur | 99.6 | |
| 3kpb_A | 122 | Uncharacterized protein MJ0100; CBS domain, S-aden | 99.59 | |
| 3fv6_A | 159 | YQZB protein; CBS domain dimer, metabolism regulat | 99.59 | |
| 2p9m_A | 138 | Hypothetical protein MJ0922; structural genomics, | 99.59 | |
| 3fhm_A | 165 | Uncharacterized protein ATU1752; CBS domain, proka | 99.59 | |
| 3lfr_A | 136 | Putative metal ION transporter; CBS, AMP, PSI, MCS | 99.58 | |
| 2yvy_A | 278 | MGTE, Mg2+ transporter MGTE; membrane protein, tra | 99.58 | |
| 2yzi_A | 138 | Hypothetical protein PH0107; sheet/helix/sheet/she | 99.57 | |
| 1pbj_A | 125 | Hypothetical protein; structural genomics, domain, | 99.57 | |
| 2rc3_A | 135 | CBS domain; in SITU proteolysis, BR, structural ge | 99.57 | |
| 2rih_A | 141 | Conserved protein with 2 CBS domains; bateman doma | 99.56 | |
| 4gqw_A | 152 | CBS domain-containing protein CBSX1, chloroplasti; | 99.56 | |
| 1vr9_A | 213 | CBS domain protein/ACT domain protein; structural | 99.56 | |
| 1yav_A | 159 | Hypothetical protein BSU14130; cystathionine beta | 99.56 | |
| 2emq_A | 157 | Hypothetical conserved protein; CBS domains, NPPSF | 99.56 | |
| 3ocm_A | 173 | Putative membrane protein; structural genomics, PS | 99.55 | |
| 4fry_A | 157 | Putative signal-transduction protein with CBS DOM; | 99.55 | |
| 2o16_A | 160 | Acetoin utilization protein ACUB, putative; struct | 99.54 | |
| 3gby_A | 128 | Uncharacterized protein CT1051; CBS domain, struct | 99.54 | |
| 3sl7_A | 180 | CBS domain-containing protein CBSX2; CBS-PAIR prot | 99.53 | |
| 2nyc_A | 144 | Nuclear protein SNF4; bateman2 domain, AMP kinase, | 99.53 | |
| 1y5h_A | 133 | Hypothetical protein RV2626C; CBS domain, unknown | 99.52 | |
| 2uv4_A | 152 | 5'-AMP-activated protein kinase subunit gamma-1; t | 99.52 | |
| 2j9l_A | 185 | Chloride channel protein 5; ION channel, ION trans | 99.52 | |
| 3k2v_A | 149 | Putative D-arabinose 5-phosphate isomerase; KPSF-l | 99.51 | |
| 3oi8_A | 156 | Uncharacterized protein; structural genomics, PSI- | 99.51 | |
| 1o50_A | 157 | CBS domain-containing predicted protein TM0935; CB | 99.5 | |
| 2pfi_A | 164 | Chloride channel protein CLC-Ka; cystathionine bet | 99.49 | |
| 2zy9_A | 473 | Mg2+ transporter MGTE; membrane protien, metal tra | 99.49 | |
| 3org_A | 632 | CMCLC; transporter, transport protein; 3.50A {Cyan | 99.48 | |
| 1pvm_A | 184 | Conserved hypothetical protein TA0289; structural | 99.48 | |
| 3pc3_A | 527 | CG1753, isoform A; CBS, synthase, PLP, heme, amino | 99.45 | |
| 2d4z_A | 250 | Chloride channel protein; CLC chloride channel cyt | 99.43 | |
| 3kxr_A | 205 | Magnesium transporter, putative; cystathionine bet | 99.42 | |
| 3usb_A | 511 | Inosine-5'-monophosphate dehydrogenase; structural | 99.4 | |
| 1zfj_A | 491 | Inosine monophosphate dehydrogenase; IMPDH, CBS do | 99.35 | |
| 3pc3_A | 527 | CG1753, isoform A; CBS, synthase, PLP, heme, amino | 99.33 | |
| 2oux_A | 286 | Magnesium transporter; 10001B, structural genomics | 99.32 | |
| 1me8_A | 503 | Inosine-5'-monophosphate dehydrogenase; alpha beta | 99.29 | |
| 4af0_A | 556 | Inosine-5'-monophosphate dehydrogenase; oxidoreduc | 99.29 | |
| 4fxs_A | 496 | Inosine-5'-monophosphate dehydrogenase; structural | 99.29 | |
| 1vrd_A | 494 | Inosine-5'-monophosphate dehydrogenase; TM1347, st | 99.29 | |
| 3org_A | 632 | CMCLC; transporter, transport protein; 3.50A {Cyan | 99.28 | |
| 2yvy_A | 278 | MGTE, Mg2+ transporter MGTE; membrane protein, tra | 99.27 | |
| 4avf_A | 490 | Inosine-5'-monophosphate dehydrogenase; oxidoreduc | 99.25 | |
| 1jcn_A | 514 | Inosine monophosphate dehydrogenase I; IMPD, IMPDH | 99.12 | |
| 3ghd_A | 70 | A cystathionine beta-synthase domain protein FUSE | 99.11 | |
| 3usb_A | 511 | Inosine-5'-monophosphate dehydrogenase; structural | 99.11 | |
| 2zy9_A | 473 | Mg2+ transporter MGTE; membrane protien, metal tra | 99.11 | |
| 2cu0_A | 486 | Inosine-5'-monophosphate dehydrogenase; structural | 99.04 | |
| 1me8_A | 503 | Inosine-5'-monophosphate dehydrogenase; alpha beta | 99.02 | |
| 1zfj_A | 491 | Inosine monophosphate dehydrogenase; IMPDH, CBS do | 99.02 | |
| 3ghd_A | 70 | A cystathionine beta-synthase domain protein FUSE | 99.0 | |
| 1vrd_A | 494 | Inosine-5'-monophosphate dehydrogenase; TM1347, st | 98.9 | |
| 4fxs_A | 496 | Inosine-5'-monophosphate dehydrogenase; structural | 98.84 | |
| 3fio_A | 70 | A cystathionine beta-synthase domain protein fused | 98.82 | |
| 4avf_A | 490 | Inosine-5'-monophosphate dehydrogenase; oxidoreduc | 98.79 | |
| 4af0_A | 556 | Inosine-5'-monophosphate dehydrogenase; oxidoreduc | 98.75 | |
| 1jcn_A | 514 | Inosine monophosphate dehydrogenase I; IMPD, IMPDH | 98.64 | |
| 3fio_A | 70 | A cystathionine beta-synthase domain protein fused | 98.64 | |
| 2cu0_A | 486 | Inosine-5'-monophosphate dehydrogenase; structural | 98.5 |
| >3t4n_C Nuclear protein SNF4; CBS domain, nucleotide binding, cytosol, protein binding; HET: ADP; 2.30A {Saccharomyces cerevisiae} PDB: 3tdh_C* 3te5_C* 2qlv_C | Back alignment and structure |
|---|
Probab=100.00 E-value=4.7e-36 Score=291.71 Aligned_cols=283 Identities=19% Similarity=0.230 Sum_probs=213.7
Q ss_pred cccccchhhhhhcCCCCeEEEeCChhHHHHHHHHhhCCCceEEEEccCCCCCCCCCCCCCCCeEEEEEehhHHHHHHhh-
Q 016003 3 VSLLADEVSDLCLGKPALRALSISAAIADALSALKNSDESFISVWDCNCCSNHRKLGDACECQCVGKVCMVDVICYLCK- 81 (397)
Q Consensus 3 ~~~~~~~v~dl~~~k~~li~v~~~~tv~~Al~~L~~~~I~s~PV~d~~~~~~~~~~~~~~~~~~vGiv~~~Dil~~l~~- 81 (397)
.||.+++|+|+|..+.++++++.++|+.+|+++|.+++++++||||.+ .++++|+++..|++.++..
T Consensus 25 ~~l~~~~~~d~m~~~~~~v~v~~~~sv~~a~~~m~~~~~~~~pV~d~~------------~~~lvGilt~~Dl~~~l~~~ 92 (323)
T 3t4n_C 25 KFLNSKTSYDVLPVSYRLIVLDTSLLVKKSLNVLLQNSIVSAPLWDSK------------TSRFAGLLTTTDFINVIQYY 92 (323)
T ss_dssp HHHHHSBHHHHSCSEEEEEEEETTSBHHHHHHHHHHTTCSCEEEEETT------------TTEEEEEECHHHHHHHHHHH
T ss_pred HHHHhCchHhhCCCCCcEEEEcCCCcHHHHHHHHHHcCCceEEEEeCC------------CCeEEEEEEHHHHHHHHHHH
Confidence 477899999999988899999999999999999999999999999964 3599999999999987742
Q ss_pred ---cCCCCChhhhhcCChhhhccC--CCCCceEEeCCCCCHHHHHHHHh-cCCceEEEeccCcchhhhhhhccccccccc
Q 016003 82 ---DSNSLSPSLALKQPVSVLLPQ--LLPPLVMHVEPSCSLLEAMDLML-GGAQNLVVPIKNRLSIKRKQQQKLSSSSLT 155 (397)
Q Consensus 82 ---~~~l~~~~~~~~~~V~~lm~~--~~~~~~~~V~~~~sL~~al~~m~-~g~~r~~V~~~~~~~~~~~~~~~~~~~~~~ 155 (397)
+.............+.+++.. -...+++++.+++++.+|++.|. +++++++|.+.+...
T Consensus 93 ~~~~~~~~~l~~~~~~~v~~i~~~~~~~~~~~v~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~--------------- 157 (323)
T 3t4n_C 93 FSNPDKFELVDKLQLDGLKDIERALGVDQLDTASIHPSRPLFEACLKMLESRSGRIPLIDQDEET--------------- 157 (323)
T ss_dssp HHCGGGGGGGGGCBHHHHHHHHHHTTC----CCCBCTTSBHHHHHHHHHHHTCSEEEEEEECTTT---------------
T ss_pred HcCcchhHHHHHHHHHHHHHHHHHhCCCCCCceEeCCCCcHHHHHHHHHhCCeeEEEEEecCCCC---------------
Confidence 110000011112334555410 01234889999999999999999 799999998643210
Q ss_pred CCCCceeeeecHHHHHHHHHhccCCCCCCccCCccccCC-CCcCeEEEeCCCcHHHHHHHHHhcCCCCCEEEEEcCCCcE
Q 016003 156 NHNGREFCWLTQEDIIRFILSSISLFSPIPALSIDSLGI-ISTDVVAVDYHSPASLALEAISRSLFDQTSVAVVDSDGFL 234 (397)
Q Consensus 156 ~~~~~~~~IITq~DIi~~l~~~~~~l~~l~~~ti~~L~~-~~~~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~l 234 (397)
+...++|+||+.|+++++..+... ..+...++.++++ |+++++++.+++++.+|++.|.++++ +++||||++|++
T Consensus 158 -~~~~l~Givt~~di~~~l~~~~~~-~~~~~~~v~~~~~~m~~~~~~v~~~~~~~~~~~~m~~~~~--~~~pVvd~~~~~ 233 (323)
T 3t4n_C 158 -HREIVVSVLTQYRILKFVALNCRE-THFLKIPIGDLNIITQDNMKSCQMTTPVIDVIQMLTQGRV--SSVPIIDENGYL 233 (323)
T ss_dssp -CCEEEEEEEEHHHHHHHHHHHCGG-GGGCCSBGGGTTCSBCTTCCCBCTTSBHHHHHHHHHHHTC--SEEEEECTTCBE
T ss_pred -CccceEEEecHHHHHHHHHhcCCc-hhhhhCcHHHcCCCCCCCcEEECCCCcHHHHHHHHHHcCC--CEEEEECCCCeE
Confidence 111378999999999999865433 3345678888544 66899999999999999999999999 999999999999
Q ss_pred EEeeccCcccCcchhHHHHHhhcChhhhhhhhccCCCCchhHHHHHHHhhhcchhhhhhhhccccCCCCCCCCCCCCCcc
Q 016003 235 IGEISPSTLGCCDETVAAAITTLSAGDLMAYIDCGGPPEDLVRVVKERLKDKGLEGMLEHFDMSSSLMPYLSTSSSSDEE 314 (397)
Q Consensus 235 vG~is~~dl~~~~~~~~~~~~~ls~~Dl~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (397)
+|+||. +|++.++... .. ..+ ...+
T Consensus 234 ~Giit~-------------------~dl~~~~~~~-----~~----~~~-~~~v-------------------------- 258 (323)
T 3t4n_C 234 INVYEA-------------------YDVLGLIKGG-----IY----NDL-SLSV-------------------------- 258 (323)
T ss_dssp EEEEET-------------------THHHHHHHTT-----HH----HHT-TSBH--------------------------
T ss_pred EEEEeH-------------------HHHHHHHhhc-----hh----hhc-cCCH--------------------------
Confidence 999664 4444422110 00 000 0000
Q ss_pred chhhhccccCCCccccccchhhhhcCC------ccEEeCCCCcHHHHHHHHHHcCCcEEEEEcCCCcEEEEEehHHHHHH
Q 016003 315 STATSKLTRSGKHSRSMSYSARMVRRA------EAIVCHPTSSLMAVMIQAIAHRVTYVWVIEDDCTLTGIVTFSDLLKV 388 (397)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~it~~~~~sl~~v~~~m~~~~i~rl~VVd~~~~lvGvVt~~DIl~~ 388 (397)
..+|.. ++++|++++++.+++++|.+++++++||||++|+++||||.+||+++
T Consensus 259 ---------------------~~~m~~~~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~~~l~Giit~~Dil~~ 317 (323)
T 3t4n_C 259 ---------------------GEALMRRSDDFEGVYTCTKNDKLSTIMDNIRKARVHRFFVVDDVGRLVGVLTLSDILKY 317 (323)
T ss_dssp ---------------------HHHGGGSCTTCCCCEEECTTCBHHHHHHHHHHSCCCEEEEECTTSBEEEEEEHHHHHHH
T ss_pred ---------------------HHHHhhccccCCCCEEECCCCCHHHHHHHHHHhCCCEEEEECCCCcEEEEEEHHHHHHH
Confidence 112333 78999999999999999999999999999998999999999999999
Q ss_pred HHHH
Q 016003 389 FRKH 392 (397)
Q Consensus 389 l~~~ 392 (397)
+..+
T Consensus 318 l~~~ 321 (323)
T 3t4n_C 318 ILLG 321 (323)
T ss_dssp HHHC
T ss_pred HHhc
Confidence 9864
|
| >3kh5_A Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, archaea, unknown function; HET: ADP AMP; 2.10A {Methanocaldococcus jannaschii} PDB: 3lfz_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7e-34 Score=269.50 Aligned_cols=267 Identities=17% Similarity=0.290 Sum_probs=206.1
Q ss_pred hhhhhhcCCCCeEEEeCChhHHHHHHHHhhCCCceEEEEccCCCCCCCCCCCCCCCeEEEEEehhHHHHHHhhc------
Q 016003 9 EVSDLCLGKPALRALSISAAIADALSALKNSDESFISVWDCNCCSNHRKLGDACECQCVGKVCMVDVICYLCKD------ 82 (397)
Q Consensus 9 ~v~dl~~~k~~li~v~~~~tv~~Al~~L~~~~I~s~PV~d~~~~~~~~~~~~~~~~~~vGiv~~~Dil~~l~~~------ 82 (397)
++.+++. +++++++++++|+.+|+++|.++++.++||+|++ .++++|++|..||+.++...
T Consensus 4 ~v~~~i~-~~~~~~v~~~~sl~~a~~~m~~~~~~~lpV~d~~------------~~~~~Givt~~di~~~~~~~~~~~~~ 70 (280)
T 3kh5_A 4 RVMKIAQ-NKKIVTVYPTTTIRKALMTMNENKYRRLPVVNAG------------NNKVVGIITSMDIVDFMGGGSKYNLI 70 (280)
T ss_dssp BGGGTSC-CSCCCCBCTTSBHHHHHHHHHHHCCCEEEEECTT------------TCBEEEEEEHHHHHHHTTTSGGGHHH
T ss_pred hHHHHhc-CCCcEEECCCCcHHHHHHHHHhCCCcEeeEEECC------------CCeEEEEEEHHHHHHHhcccchhhhh
Confidence 4555553 4589999999999999999999999999999962 36899999999999987531
Q ss_pred --CCCCChhhhhcCChhhhccCCCCCceEEeCCCCCHHHHHHHHh-cCCceEEEeccCcchhhhhhhcccccccccCCCC
Q 016003 83 --SNSLSPSLALKQPVSVLLPQLLPPLVMHVEPSCSLLEAMDLML-GGAQNLVVPIKNRLSIKRKQQQKLSSSSLTNHNG 159 (397)
Q Consensus 83 --~~l~~~~~~~~~~V~~lm~~~~~~~~~~V~~~~sL~~al~~m~-~g~~r~~V~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (397)
.........++.+|+++|... ++++.+++++.+|++.|. +++++++|.+++ +
T Consensus 71 ~~~~~~~~~~~~~~~v~~im~~~----~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~---------------------~ 125 (280)
T 3kh5_A 71 REKHERNFLAAINEPVREIMEEN----VITLKENADIDEAIETFLTKNVGGAPIVNDE---------------------N 125 (280)
T ss_dssp HTTSTTCHHHHTTSBGGGTSBCS----CCCEETTCBHHHHHHHHHHTTCSEEEEECTT---------------------C
T ss_pred hhccccchhHHhhhhHHHhcCCC----CEEECCCCCHHHHHHHHHhCCCCEEEEEcCC---------------------C
Confidence 111222234578999999754 889999999999999999 799999988532 4
Q ss_pred ceeeeecHHHHHHHHHhccCCCCCCccCCccccCCCCcCeEEEeCCCcHHHHHHHHHhcCCCCCEEEEEcCCCcEEEeec
Q 016003 160 REFCWLTQEDIIRFILSSISLFSPIPALSIDSLGIISTDVVAVDYHSPASLALEAISRSLFDQTSVAVVDSDGFLIGEIS 239 (397)
Q Consensus 160 ~~~~IITq~DIi~~l~~~~~~l~~l~~~ti~~L~~~~~~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~is 239 (397)
+.+|++|+.|+++++.+... ...++.+ +|+++++++.+++++.+|++.|.++++ +.+||+ ++|+++|+||
T Consensus 126 ~~~Givt~~dl~~~~~~~~~-----~~~~v~~--~m~~~~~~v~~~~~l~~~~~~~~~~~~--~~~~Vv-~~~~~~Givt 195 (280)
T 3kh5_A 126 QLISLITERDVIRALLDKID-----ENEVIDD--YITRDVIVATPGERLKDVARTMVRNGF--RRLPVV-SEGRLVGIIT 195 (280)
T ss_dssp BEEEEEEHHHHHHHHGGGSC-----TTCBSGG--GCBCSCCCBCTTCBHHHHHHHHHHHTC--SEEEEE-ETTEEEEEEE
T ss_pred EEEEEEEHHHHHHHHhhcCC-----CCCCHHH--HhCCCCeEECCCCcHHHHHHHHHHcCC--CEEEEE-ECCEEEEEEE
Confidence 67899999999999864321 1235555 788999999999999999999999999 999999 6789999955
Q ss_pred cCcccCcchhHHHHHhhcChhhhhhhhccCCCCchhHHHHHHHhhhcchhhhhhhhccccCCCCCCCCCCCCCccchhhh
Q 016003 240 PSTLGCCDETVAAAITTLSAGDLMAYIDCGGPPEDLVRVVKERLKDKGLEGMLEHFDMSSSLMPYLSTSSSSDEESTATS 319 (397)
Q Consensus 240 ~~dl~~~~~~~~~~~~~ls~~Dl~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (397)
.+|++..+... + .... +... .. .+.
T Consensus 196 -------------------~~dl~~~~~~~------------~----~~~~----~~~~--~~--------------~~~ 220 (280)
T 3kh5_A 196 -------------------STDFIKLLGSD------------W----AFNH----MQTG--NV--------------REI 220 (280)
T ss_dssp -------------------HHHHHHHHTSH------------H----HHHH----HHSC--CT--------------HHH
T ss_pred -------------------HHHHHHHHhhh------------h----hhhh----hccc--ch--------------hhh
Confidence 55655533110 0 0000 0000 00 000
Q ss_pred ccccCCCccccccchhhhhcCCccEEeCCCCcHHHHHHHHHHcCCcEEEEEcCCCcEEEEEehHHHHHHH
Q 016003 320 KLTRSGKHSRSMSYSARMVRRAEAIVCHPTSSLMAVMIQAIAHRVTYVWVIEDDCTLTGIVTFSDLLKVF 389 (397)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~it~~~~~sl~~v~~~m~~~~i~rl~VVd~~~~lvGvVt~~DIl~~l 389 (397)
...+...+|..++++|++++++.+|+++|.+++++++||+|++|+++|+||++||++++
T Consensus 221 -----------~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~g~~~Givt~~dil~~l 279 (280)
T 3kh5_A 221 -----------TNVRMEEIMKRDVITAKEGDKLKKIAEIMVTNDIGALPVVDENLRIKGIITEKDVLKYF 279 (280)
T ss_dssp -----------HHCBHHHHSBSSCCCBCTTCBHHHHHHHHHHHTCCEEEEECTTCBEEEEEEHHHHGGGG
T ss_pred -----------hCCcHHHHhcCCCEEECCCCCHHHHHHHHHHCCCCEEEEECCCCeEEEEEeHHHHHHhh
Confidence 01112346788999999999999999999999999999999989999999999999876
|
| >2qrd_G Protein C1556.08C; AMPK, ADP, ATP-binding, kinase, nucleotide-binding, serine/T protein kinase, transferase, CBS domain; HET: ADP ATP; 2.41A {Schizosaccharomyces pombe} PDB: 2qrc_G* 2qr1_G* 2qre_G* 2oox_G* 2ooy_G* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-33 Score=273.85 Aligned_cols=282 Identities=17% Similarity=0.191 Sum_probs=212.4
Q ss_pred ccccchhhhhhcCCCCeEEEeCChhHHHHHHHHhhCCCceEEEEccCCCCCCCCCCCCCCCeEEEEEehhHHHHHHhhc-
Q 016003 4 SLLADEVSDLCLGKPALRALSISAAIADALSALKNSDESFISVWDCNCCSNHRKLGDACECQCVGKVCMVDVICYLCKD- 82 (397)
Q Consensus 4 ~~~~~~v~dl~~~k~~li~v~~~~tv~~Al~~L~~~~I~s~PV~d~~~~~~~~~~~~~~~~~~vGiv~~~Dil~~l~~~- 82 (397)
||.+.+|+|+|..+++++++++++|+.+|+++|.+++++++||||.+ .++|+|+|+..||+.++...
T Consensus 18 ~l~~~~v~dim~~~~~vv~v~~~~tv~~a~~~~~~~~~~~~pV~d~~------------~~~~vGiv~~~Dl~~~~~~~~ 85 (334)
T 2qrd_G 18 FIRSRTSYDVLPTSFRLIVFDVTLFVKTSLSLLTLNNIVSAPLWDSE------------ANKFAGLLTMADFVNVIKYYY 85 (334)
T ss_dssp HHHHSBGGGGSCSEEEEEEEETTSBHHHHHHHHHHHTCSCEEEEETT------------TTEEEEEECHHHHHHHHHHHH
T ss_pred HHhcCchhhhCCCCCCEEEEcCCCCHHHHHHHHHHcCCeEEEEEeCC------------CCeEEEEEEHHHHHHHHHHHh
Confidence 57789999999877789999999999999999999999999999963 36999999999999887531
Q ss_pred C---CCCChhhhhcCChhhh-------ccCCCCCceEEeCCCCCHHHHHHHHh-cCCceEEEeccCcchhhhhhhccccc
Q 016003 83 S---NSLSPSLALKQPVSVL-------LPQLLPPLVMHVEPSCSLLEAMDLML-GGAQNLVVPIKNRLSIKRKQQQKLSS 151 (397)
Q Consensus 83 ~---~l~~~~~~~~~~V~~l-------m~~~~~~~~~~V~~~~sL~~al~~m~-~g~~r~~V~~~~~~~~~~~~~~~~~~ 151 (397)
. +........+.+++.+ |... ..++++.+++++.++++.|. +++++++|.++....
T Consensus 86 ~~~~~~~~~~~~~~~~~~~i~~~l~~im~~~--~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~----------- 152 (334)
T 2qrd_G 86 QSSSFPEAIAEIDKFRLLGLREVERKIGAIP--PETIYVHPMHSLMDACLAMSKSRARRIPLIDVDGET----------- 152 (334)
T ss_dssp HHCSCGGGGGGGGSCBHHHHHHHHHHHTCSC--SSCCCBCTTSBHHHHHHHHHHSCCSEEEEEEEETTT-----------
T ss_pred hccCCccHHHHHhhhchhhHHHHHHhhccCC--CceeeeCCCCcHHHHHHHHHHCCceEEEEEeCCCCc-----------
Confidence 0 0000001113333333 4322 22488999999999999998 799999988642100
Q ss_pred ccccCCCCceeeeecHHHHHHHHHhccCCCCCCccCCccccC-CCCcCeEEEeCCCcHHHHHHHHHhcCCCCCEEEEEcC
Q 016003 152 SSLTNHNGREFCWLTQEDIIRFILSSISLFSPIPALSIDSLG-IISTDVVAVDYHSPASLALEAISRSLFDQTSVAVVDS 230 (397)
Q Consensus 152 ~~~~~~~~~~~~IITq~DIi~~l~~~~~~l~~l~~~ti~~L~-~~~~~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~ 230 (397)
+....+|+||+.||++++..+.... .+...++++++ +|+++++++.+++++.+|++.|.++++ +++||+|+
T Consensus 153 -----~~~~~~Givt~~dl~~~~~~~~~~~-~~~~~~v~~l~~~m~~~~~~v~~~~~~~~~~~~m~~~~~--~~~~Vvd~ 224 (334)
T 2qrd_G 153 -----GSEMIVSVLTQYRILKFISMNCKET-AMLRVPLNQMTIGTWSNLATASMETKVYDVIKMLAEKNI--SAVPIVNS 224 (334)
T ss_dssp -----TEEEEEEEEEHHHHHHHHHHHCGGG-GGCCCBGGGSSCSBCSSCCCBCTTSBHHHHHHHHHHHTC--SEEEEECT
T ss_pred -----CccceEEEeeHHHHHHHHHhhccch-hhhhCcHHHhCCcccCCceEECCCCcHHHHHHHHHHcCC--cEEEEEcC
Confidence 0012789999999999997643221 22356777765 588999999999999999999999999 99999999
Q ss_pred CCcEEEeeccCcccCcchhHHHHHhhcChhhhhhhhccCCCCchhHHHHHHHhhhcchhhhhhhhccccCCCCCCCCCCC
Q 016003 231 DGFLIGEISPSTLGCCDETVAAAITTLSAGDLMAYIDCGGPPEDLVRVVKERLKDKGLEGMLEHFDMSSSLMPYLSTSSS 310 (397)
Q Consensus 231 ~g~lvG~is~~dl~~~~~~~~~~~~~ls~~Dl~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (397)
+|+++|+|| .+|++.++..+ .....
T Consensus 225 ~~~~~Giit-------------------~~dl~~~~~~~-----------------~~~~~------------------- 249 (334)
T 2qrd_G 225 EGTLLNVYE-------------------SVDVMHLIQDG-----------------DYSNL------------------- 249 (334)
T ss_dssp TCBEEEEEE-------------------THHHHHHHTTS-----------------CGGGG-------------------
T ss_pred CCcEEEEEE-------------------HHHHHHHhhcc-----------------ccccc-------------------
Confidence 999999955 55555432110 00000
Q ss_pred CCccchhhhccccCCCccccccchhhhhcC------CccEEeCCCCcHHHHHHHHHHcCCcEEEEEcCCCcEEEEEehHH
Q 016003 311 SDEESTATSKLTRSGKHSRSMSYSARMVRR------AEAIVCHPTSSLMAVMIQAIAHRVTYVWVIEDDCTLTGIVTFSD 384 (397)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~it~~~~~sl~~v~~~m~~~~i~rl~VVd~~~~lvGvVt~~D 384 (397)
..+...+|. .++++|++++++.+++++|.+++++++||||++|+++|+||++|
T Consensus 250 ---------------------~~~v~~~m~~~~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~g~l~Giit~~d 308 (334)
T 2qrd_G 250 ---------------------DLSVGEALLKRPANFDGVHTCRATDRLDGIFDAIKHSRVHRLFVVDENLKLEGILSLAD 308 (334)
T ss_dssp ---------------------GSBHHHHHTTCCTTCCCCCEECTTCBHHHHHHHHHHSCCCEEEEECTTCBEEEEEEHHH
T ss_pred ---------------------cCcHHHHHhcccccCCCCEEECCCCcHHHHHHHHHHcCCCEEEEECCCCeEEEEEeHHH
Confidence 000112233 48899999999999999999999999999999899999999999
Q ss_pred HHHHHHHHHh
Q 016003 385 LLKVFRKHLE 394 (397)
Q Consensus 385 Il~~l~~~~~ 394 (397)
|++++.++.+
T Consensus 309 il~~~~~~~~ 318 (334)
T 2qrd_G 309 ILNYIIYDKT 318 (334)
T ss_dssp HHHHHHSCCC
T ss_pred HHHHHHhccc
Confidence 9999976543
|
| >2v8q_E 5'-AMP-activated protein kinase subunit gamma-1; phosphorylation, nucleotide-binding, serine/threonine-protei kinase, magnesium, CBS domain; HET: AMP; 2.10A {Rattus norvegicus} SCOP: d.37.1.1 d.37.1.1 PDB: 2v92_E* 2v9j_E* 2y8l_E* 2y8q_E* 2y94_E* 2ya3_E* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-33 Score=272.19 Aligned_cols=282 Identities=18% Similarity=0.236 Sum_probs=216.5
Q ss_pred cccccchhhhhhcCCCCeEEEeCChhHHHHHHHHhhCCCceEEEEccCCCCCCCCCCCCCCCeEEEEEehhHHHHHHhhc
Q 016003 3 VSLLADEVSDLCLGKPALRALSISAAIADALSALKNSDESFISVWDCNCCSNHRKLGDACECQCVGKVCMVDVICYLCKD 82 (397)
Q Consensus 3 ~~~~~~~v~dl~~~k~~li~v~~~~tv~~Al~~L~~~~I~s~PV~d~~~~~~~~~~~~~~~~~~vGiv~~~Dil~~l~~~ 82 (397)
.||...+|+|+|..+++++++++++|+.+|+++|.+++++++||++.+ .++++|+|+..|++.++...
T Consensus 30 ~~l~~~~v~dim~p~~~v~~v~~~~~v~~a~~~~~~~~~~~~pV~d~~------------~~~~vGivt~~Dll~~l~~~ 97 (330)
T 2v8q_E 30 TFMKSHRCYDLIPTSSKLVVFDTSLQVKKAFFALVTNGVRAAPLWDSK------------KQSFVGMLTITDFINILHRY 97 (330)
T ss_dssp HHHHHSBGGGGSCSEEEEEEEETTSBHHHHHHHHHHHTCSEEEEEETT------------TTEEEEEEEHHHHHHHHHHH
T ss_pred HHHHcCcHhhhccCCCcEEEEeCCCcHHHHHHHHHHcCCcEEEEEeCC------------CCeEEEEEEHHHHHHHHHHH
Confidence 467888999999777889999999999999999999999999999964 26899999999999877531
Q ss_pred ----C-CCCCh----hhhhcCChhhhccCCCCCceEEeCCCCCHHHHHHHHh-cCCceEEEeccCcchhhhhhhcccccc
Q 016003 83 ----S-NSLSP----SLALKQPVSVLLPQLLPPLVMHVEPSCSLLEAMDLML-GGAQNLVVPIKNRLSIKRKQQQKLSSS 152 (397)
Q Consensus 83 ----~-~l~~~----~~~~~~~V~~lm~~~~~~~~~~V~~~~sL~~al~~m~-~g~~r~~V~~~~~~~~~~~~~~~~~~~ 152 (397)
. ..... ...+..+++++|.. +++++.+++++.+|++.|. +++++++|.+++
T Consensus 98 ~~~~~~~~~~l~~~~~~~~~~~~~~im~~----~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~--------------- 158 (330)
T 2v8q_E 98 YKSALVQIYELEEHKIETWREVYLQDSFK----PLVCISPNASLFDAVSSLIRNKIHRLPVIDPE--------------- 158 (330)
T ss_dssp HHHHTTTCCCGGGCBHHHHHHHHSSSSCC----CCCCBCTTSBHHHHHHHHHHHTCSCEEEECTT---------------
T ss_pred HhccccchhHHhhccHHHHHHHHhhcccC----CceEeCCCCCHHHHHHHHHHCCCCeEEEEeCC---------------
Confidence 0 11110 01112234556654 3899999999999999998 799999988531
Q ss_pred cccCCCCceeeeecHHHHHHHHHhccCC--CCCCccCCccccCCCC-cCeEEEeCCCcHHHHHHHHHhcCCCCCEEEEEc
Q 016003 153 SLTNHNGREFCWLTQEDIIRFILSSISL--FSPIPALSIDSLGIIS-TDVVAVDYHSPASLALEAISRSLFDQTSVAVVD 229 (397)
Q Consensus 153 ~~~~~~~~~~~IITq~DIi~~l~~~~~~--l~~l~~~ti~~L~~~~-~~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd 229 (397)
.++.+|+||+.|+++++.++... ...+...++.++.+|+ ++++++.+++++.+|++.|.++++ +.+||+|
T Consensus 159 -----~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~v~~~~v~~~~~~~~v~~~~~l~~~~~~m~~~~~--~~~~Vvd 231 (330)
T 2v8q_E 159 -----SGNTLYILTHKRILKFLKLFITEFPKPEFMSKSLEELQIGTYANIAMVRTTTPVYVALGIFVQHRV--SALPVVD 231 (330)
T ss_dssp -----TCCEEEEECHHHHHHHHHHHSCSSSCCGGGGSBHHHHTCSBCSSCCCEETTCBHHHHHHHHHHHCC--SEEEEEC
T ss_pred -----CCcEEEEEcHHHHHHHHHHHhhccCchhhhcCCHHHhcccCcCCceEECCCCCHHHHHHHHHHcCC--CeEEEEC
Confidence 24678999999999999765332 2334567888887887 889999999999999999999999 9999999
Q ss_pred CCCcEEEeeccCcccCcchhHHHHHhhcChhhhhhhhccCCCCchhHHHHHHHhhhcchhhhhhhhccccCCCCCCCCCC
Q 016003 230 SDGFLIGEISPSTLGCCDETVAAAITTLSAGDLMAYIDCGGPPEDLVRVVKERLKDKGLEGMLEHFDMSSSLMPYLSTSS 309 (397)
Q Consensus 230 ~~g~lvG~is~~dl~~~~~~~~~~~~~ls~~Dl~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (397)
++|+++|+||..||.+ .+.... +..+ ...+..+ +.
T Consensus 232 ~~~~l~Giit~~dl~~-------------------~~~~~~-~~~~---------~~~v~~~---~~------------- 266 (330)
T 2v8q_E 232 EKGRVVDIYSKFDVIN-------------------LAAEKT-YNNL---------DVSVTKA---LQ------------- 266 (330)
T ss_dssp TTSBEEEEEEGGGTGG-------------------GGGSSC-CCCC---------SSBHHHH---GG-------------
T ss_pred CCCcEEEEEEHHHHHH-------------------HHhccc-cccc---------cCcHHHH---Hh-------------
Confidence 9999999976555544 221000 0000 0000000 00
Q ss_pred CCCccchhhhccccCCCccccccchhhhhcCCccEEeCCCCcHHHHHHHHHHcCCcEEEEEcCCCcEEEEEehHHHHHHH
Q 016003 310 SSDEESTATSKLTRSGKHSRSMSYSARMVRRAEAIVCHPTSSLMAVMIQAIAHRVTYVWVIEDDCTLTGIVTFSDLLKVF 389 (397)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~~~~sl~~v~~~m~~~~i~rl~VVd~~~~lvGvVt~~DIl~~l 389 (397)
. ...|+.++++|++++++.+++++|.+++++++||+|++|+++|+||.+||++++
T Consensus 267 --------------~-----------~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~g~l~Giit~~Dil~~~ 321 (330)
T 2v8q_E 267 --------------H-----------RSHYFEGVLKCYLHETLEAIINRLVEAEVHRLVVVDEHDVVKGIVSLSDILQAL 321 (330)
T ss_dssp --------------G-----------CCSCCCSCCEECTTSBHHHHHHHHHHHTCSEEEEECTTSBEEEEEEHHHHHHHH
T ss_pred --------------c-----------cccccCCCeEECCCCcHHHHHHHHHHCCCcEEEEEcCCCcEEEEEeHHHHHHHH
Confidence 0 012467999999999999999999999999999999989999999999999998
Q ss_pred HHH
Q 016003 390 RKH 392 (397)
Q Consensus 390 ~~~ 392 (397)
.++
T Consensus 322 ~~~ 324 (330)
T 2v8q_E 322 VLT 324 (330)
T ss_dssp HSS
T ss_pred Hhh
Confidence 764
|
| >3ddj_A CBS domain-containing protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.80A {Sulfolobus solfataricus} SCOP: d.37.1.1 d.37.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-33 Score=270.09 Aligned_cols=267 Identities=15% Similarity=0.170 Sum_probs=212.4
Q ss_pred cccchhhhhhcCCCCeEEEeCChhHHHHHHHHhhCCCceEEEEccCCCCCCCCCCCCCCCeEEEEEehhHHHHHHhhcCC
Q 016003 5 LLADEVSDLCLGKPALRALSISAAIADALSALKNSDESFISVWDCNCCSNHRKLGDACECQCVGKVCMVDVICYLCKDSN 84 (397)
Q Consensus 5 ~~~~~v~dl~~~k~~li~v~~~~tv~~Al~~L~~~~I~s~PV~d~~~~~~~~~~~~~~~~~~vGiv~~~Dil~~l~~~~~ 84 (397)
....+|+|+|. ++++++++++|+.+|+++|.++++.++||+| + +++|++|..||+.++.....
T Consensus 17 ~~~~~V~dim~--~~~~~v~~~~~v~~a~~~m~~~~~~~~~V~d--~-------------~l~GivT~~Di~~~~~~~~~ 79 (296)
T 3ddj_A 17 FQGMNIETLMI--KNPPILSKEDRLGSAFKKINEGGIGRIIVAN--E-------------KIEGLLTTRDLLSTVESYCK 79 (296)
T ss_dssp TCCSSGGGTCE--ESCCEECTTSBHHHHHHHTTGGGCCEEEEES--S-------------SEEEEEEHHHHHGGGTTCC-
T ss_pred hcccCHHHhcc--CCCcEECCCccHHHHHHHHHHCCCceEEEEC--C-------------eEEEEEeHHHHHHHhccccc
Confidence 34678999995 5789999999999999999999999999999 2 69999999999999864221
Q ss_pred CCC----hhhhhcCChhhhccCCCCCceEEeCCCCCHHHHHHHHh-cCCceEEEeccCcchhhhhhhcccccccccCCCC
Q 016003 85 SLS----PSLALKQPVSVLLPQLLPPLVMHVEPSCSLLEAMDLML-GGAQNLVVPIKNRLSIKRKQQQKLSSSSLTNHNG 159 (397)
Q Consensus 85 l~~----~~~~~~~~V~~lm~~~~~~~~~~V~~~~sL~~al~~m~-~g~~r~~V~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (397)
... .....+.+|+++|... ++++.+++++.+|++.|. +++++++|.+++ +
T Consensus 80 ~~~~~~~~~~~~~~~v~~im~~~----~~~v~~~~~~~~a~~~m~~~~~~~lpVvd~~---------------------~ 134 (296)
T 3ddj_A 80 DSCSQGDLYHISTTPIIDYMTPN----PVTVYNTSDEFTAINIMVTRNFGSLPVVDIN---------------------D 134 (296)
T ss_dssp --CCHHHHHHHHTSBGGGTSEES----CCCEETTSCHHHHHHHHHHHTCSEEEEECTT---------------------S
T ss_pred ccccchhhHHHhcccHHHhccCC----CEEEcCCCCHHHHHHHHHHcCCCEEEEEcCC---------------------C
Confidence 111 1123468899999754 889999999999999999 799999998532 4
Q ss_pred ceeeeecHHHHHHHHHhccCCCCCCccCCccccCCCCcCeEEEeCCCcHHHHHHHHHhcCCCCCEEEEEcCCCcEEEeec
Q 016003 160 REFCWLTQEDIIRFILSSISLFSPIPALSIDSLGIISTDVVAVDYHSPASLALEAISRSLFDQTSVAVVDSDGFLIGEIS 239 (397)
Q Consensus 160 ~~~~IITq~DIi~~l~~~~~~l~~l~~~ti~~L~~~~~~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~is 239 (397)
+++|+||..|+++++... ....++++ +|+++++++.+++++.+|++.|.++++ +.+||+|++|+++|+||
T Consensus 135 ~lvGivt~~dl~~~~~~~------~~~~~v~~--~m~~~~~~v~~~~~l~~~~~~m~~~~~--~~~~Vvd~~~~~~Givt 204 (296)
T 3ddj_A 135 KPVGIVTEREFLLLYKDL------DEIFPVKV--FMSTKVQTIYKEVRLDQAVKLMLRRGF--RRLPVIDDDNKVVGIVT 204 (296)
T ss_dssp CEEEEEEHHHHGGGGGGS------CCCCBHHH--HSBCSCCCEETTSBHHHHHHHHHHHTC--SEEEEECTTSCEEEEEE
T ss_pred cEEEEEeHHHHHHhhhcc------cccccHHH--hhcCCCeEECCCCCHHHHHHHHHHcCC--CEEEEEcCCCEEEEEEE
Confidence 678999999999876432 12446666 688999999999999999999999999 99999999999999955
Q ss_pred cCcccCcchhHHHHHhhcChhhhhhhhccCCCCchhHHHHHHHhhhcchhhhhhhhccccCCCCCCCCCCCCCccchhhh
Q 016003 240 PSTLGCCDETVAAAITTLSAGDLMAYIDCGGPPEDLVRVVKERLKDKGLEGMLEHFDMSSSLMPYLSTSSSSDEESTATS 319 (397)
Q Consensus 240 ~~dl~~~~~~~~~~~~~ls~~Dl~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (397)
.+|++..+.. . +..+ .. +..
T Consensus 205 -------------------~~dl~~~~~~-------------~-----~~~~----~~-------------------~~~ 224 (296)
T 3ddj_A 205 -------------------VVNAIKQLAK-------------A-----VDKL----DP-------------------DYF 224 (296)
T ss_dssp -------------------HHHHHHHHHH-------------H-----HHHT----CT-------------------HHH
T ss_pred -------------------HHHHHHHHHH-------------H-----Hhhc----Ch-------------------hhh
Confidence 5666553210 0 0000 00 000
Q ss_pred ccccCCCccccccchhhhhcCCccEEeCCCCcHHHHHHHHHHcCCcEEEEEcCCCcEEEEEehHHHHHHHHHHHh
Q 016003 320 KLTRSGKHSRSMSYSARMVRRAEAIVCHPTSSLMAVMIQAIAHRVTYVWVIEDDCTLTGIVTFSDLLKVFRKHLE 394 (397)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~it~~~~~sl~~v~~~m~~~~i~rl~VVd~~~~lvGvVt~~DIl~~l~~~~~ 394 (397)
. ......+|..++++|++++++.+++++|.+++++++||+|++|+++|+||++||++++.+++.
T Consensus 225 ---~--------~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~g~~~Giit~~Dil~~l~~~~~ 288 (296)
T 3ddj_A 225 ---Y--------GKVVKDVMVTNLVTIDELASVNRAAAEMIVKRIGSLLILNKDNTIRGIITERDLLIALHHILV 288 (296)
T ss_dssp ---H--------TCBHHHHSBCCCCBCCTTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHHHHHH
T ss_pred ---c--------CcCHHHHhCCCCeEECCCCcHHHHHHHHHHcCCCEEEEECCCCeEEEEEcHHHHHHHHHHHhc
Confidence 0 011234678899999999999999999999999999999988999999999999999988754
|
| >2yzq_A Putative uncharacterized protein PH1780; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; HET: SAM; 1.63A {Pyrococcus horikoshii} SCOP: d.37.1.1 d.37.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-32 Score=260.81 Aligned_cols=277 Identities=23% Similarity=0.233 Sum_probs=185.7
Q ss_pred chhhhhhcCCCCeEEEeCChhHHHHHHHHhhCCCceEEEEccCCCCCCCCCCCCCCCeEEEEEehhHHHHHHhhcCCCCC
Q 016003 8 DEVSDLCLGKPALRALSISAAIADALSALKNSDESFISVWDCNCCSNHRKLGDACECQCVGKVCMVDVICYLCKDSNSLS 87 (397)
Q Consensus 8 ~~v~dl~~~k~~li~v~~~~tv~~Al~~L~~~~I~s~PV~d~~~~~~~~~~~~~~~~~~vGiv~~~Dil~~l~~~~~l~~ 87 (397)
++|+|+|. ++++++++++|+.+|+++|.++++.++||+|. +++++|+++..|++..+.
T Consensus 1 m~v~~im~--~~~~~v~~~~~~~~a~~~~~~~~~~~~pV~d~-------------~~~~~Giv~~~dl~~~~~------- 58 (282)
T 2yzq_A 1 MRVKTIMT--QNPVTITLPATRNYALELFKKYKVRSFPVVNK-------------EGKLVGIISVKRILVNPD------- 58 (282)
T ss_dssp CBHHHHSE--ESCCCEESSCC------------CCEEEEECT-------------TCCEEEEEESSCC------------
T ss_pred CchHHhcc--CCCeEECCCCcHHHHHHHHHHcCCCeEEEEcC-------------CCcEEEEEEHHHHHhhhc-------
Confidence 47899995 67899999999999999999999999999996 368999999999986542
Q ss_pred hhhhhcCChhhhccCCCCCceEEeCCCCCHHHHHHHHh-cCCceEEEeccCcchhhhhhhcccccccccCCCCceeeeec
Q 016003 88 PSLALKQPVSVLLPQLLPPLVMHVEPSCSLLEAMDLML-GGAQNLVVPIKNRLSIKRKQQQKLSSSSLTNHNGREFCWLT 166 (397)
Q Consensus 88 ~~~~~~~~V~~lm~~~~~~~~~~V~~~~sL~~al~~m~-~g~~r~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IIT 166 (397)
+.+++++|... ++++.+++++.+|++.|. ++.++++|++++ ++.+|+||
T Consensus 59 -----~~~v~~~m~~~----~~~v~~~~~l~~a~~~m~~~~~~~~~Vvd~~---------------------~~~~Giit 108 (282)
T 2yzq_A 59 -----EEQLAMLVKRD----VPVVKENDTLKKAAKLMLEYDYRRVVVVDSK---------------------GKPVGILT 108 (282)
T ss_dssp ----------CCCBSC----CCEEETTSBHHHHHHHHHHHTCSEEEEECTT---------------------SCEEEEEE
T ss_pred -----cCCHHHHcCCC----CcEECCCCcHHHHHHHHHHcCCCEEEEEcCC---------------------CEEEEEEE
Confidence 35788899654 789999999999999999 799999887532 46789999
Q ss_pred HHHHHH-HHHhccCCCCCCccCCccccCCCCcCeEEEeCCCcHHHHHHHHHhcCCCCCEEEEEcCCCcEEEeeccCcccC
Q 016003 167 QEDIIR-FILSSISLFSPIPALSIDSLGIISTDVVAVDYHSPASLALEAISRSLFDQTSVAVVDSDGFLIGEISPSTLGC 245 (397)
Q Consensus 167 q~DIi~-~l~~~~~~l~~l~~~ti~~L~~~~~~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~is~~dl~~ 245 (397)
+.|+++ ++.+. . .....++++ +|+++++++.+++++.+|++.|.++++ +++||+|++|+++|+||..||.+
T Consensus 109 ~~di~~~~~~~~-~---~~~~~~v~~--~m~~~~~~v~~~~~l~~~~~~~~~~~~--~~l~Vvd~~~~~~Giit~~dl~~ 180 (282)
T 2yzq_A 109 VGDIIRRYFAKS-E---KYKGVEIEP--YYQRYVSIVWEGTPLKAALKALLLSNS--MALPVVDSEGNLVGIVDETDLLR 180 (282)
T ss_dssp HHHHHHHTTTTC-S---GGGGCBSTT--TSBSCCCCEETTSBHHHHHHHHHTCSS--SEEEEECTTSCEEEEEEGGGGGG
T ss_pred HHHHHHHHHhcc-C---CcccCcHHH--HhCCCCEEECCCCCHHHHHHHHHHcCC--cEEEEEcCCCeEEEEEEHHHHhh
Confidence 999998 76532 1 112445554 788899999999999999999999999 99999999999999988777763
Q ss_pred cchhHHHHHhhcChhhhhhhhccCCCCchhHHHHHHHhhhcchhhhhhhhccccCCCCCCCCCCCCCccchhhhccccCC
Q 016003 246 CDETVAAAITTLSAGDLMAYIDCGGPPEDLVRVVKERLKDKGLEGMLEHFDMSSSLMPYLSTSSSSDEESTATSKLTRSG 325 (397)
Q Consensus 246 ~~~~~~~~~~~ls~~Dl~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (397)
...... . +...++ .+.. .+ .++....... .+..
T Consensus 181 ~~~~~~-~---~~~~~~-~~~~------~~-----~~~~~~~~~~---~~~~---------------------------- 213 (282)
T 2yzq_A 181 DSEIVR-I---MKSTEL-AASS------EE-----EWILESHPTL---LFEK---------------------------- 213 (282)
T ss_dssp CGGGCC--------------------------------------------------------------------------
T ss_pred hhhhhh-h---hccchh-hhhh------hh-----hhhcccchHH---HHhH----------------------------
Confidence 110000 0 000000 0000 00 0000000000 0000
Q ss_pred CccccccchhhhhcCCccEEeCCCCcHHHHHHHHHHcCCcEEEEEcCCCcEEEEEehHHHHHHHHH
Q 016003 326 KHSRSMSYSARMVRRAEAIVCHPTSSLMAVMIQAIAHRVTYVWVIEDDCTLTGIVTFSDLLKVFRK 391 (397)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~it~~~~~sl~~v~~~m~~~~i~rl~VVd~~~~lvGvVt~~DIl~~l~~ 391 (397)
........+...+|+.+++||+|++++.+|+++|.+++++++||+|++|+++|+||++||++++.+
T Consensus 214 ~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~lvGiit~~Dil~~~~~ 279 (282)
T 2yzq_A 214 FELQLPNKPVAEIMTRDVIVATPHMTVHEVALKMAKYSIEQLPVIRGEGDLIGLIRDFDLLKVLVK 279 (282)
T ss_dssp -----CCCBGGGTCBSSCCCBCTTSBHHHHHHHHHHHTCSEEEEEETTTEEEEEEEHHHHGGGGCC
T ss_pred hhhhhccCCHHHhcCCCCceeCCCCCHHHHHHHHHHcCcceeEEECCCCCEEEEEeHHHHHHHHHh
Confidence 000000122345788999999999999999999999999999999998899999999999998754
|
| >3ddj_A CBS domain-containing protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.80A {Sulfolobus solfataricus} SCOP: d.37.1.1 d.37.1.1 | Back alignment and structure |
|---|
Probab=99.88 E-value=1.8e-22 Score=193.50 Aligned_cols=193 Identities=17% Similarity=0.156 Sum_probs=155.1
Q ss_pred hhcCChhhhccCCCCCceEEeCCCCCHHHHHHHHh-cCCceEEEeccCcchhhhhhhcccccccccCCCCceeeeecHHH
Q 016003 91 ALKQPVSVLLPQLLPPLVMHVEPSCSLLEAMDLML-GGAQNLVVPIKNRLSIKRKQQQKLSSSSLTNHNGREFCWLTQED 169 (397)
Q Consensus 91 ~~~~~V~~lm~~~~~~~~~~V~~~~sL~~al~~m~-~g~~r~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IITq~D 169 (397)
....+|+++|... ++++.+++++.+|++.|. +++++++|.+ ++++|++|+.|
T Consensus 17 ~~~~~V~dim~~~----~~~v~~~~~v~~a~~~m~~~~~~~~~V~d-----------------------~~l~GivT~~D 69 (296)
T 3ddj_A 17 FQGMNIETLMIKN----PPILSKEDRLGSAFKKINEGGIGRIIVAN-----------------------EKIEGLLTTRD 69 (296)
T ss_dssp TCCSSGGGTCEES----CCEECTTSBHHHHHHHTTGGGCCEEEEES-----------------------SSEEEEEEHHH
T ss_pred hcccCHHHhccCC----CcEECCCccHHHHHHHHHHCCCceEEEEC-----------------------CeEEEEEeHHH
Confidence 3467899999754 899999999999999999 7899998875 25688999999
Q ss_pred HHHHHHhccC------CCCCCccCCccccCCCCcCeEEEeCCCcHHHHHHHHHhcCCCCCEEEEEcCCCcEEEeeccCcc
Q 016003 170 IIRFILSSIS------LFSPIPALSIDSLGIISTDVVAVDYHSPASLALEAISRSLFDQTSVAVVDSDGFLIGEISPSTL 243 (397)
Q Consensus 170 Ii~~l~~~~~------~l~~l~~~ti~~L~~~~~~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~is~~dl 243 (397)
|++++..... .+......++++ +|+++++++.+++++.+|+++|.++++ +++||+|++|+++|+
T Consensus 70 i~~~~~~~~~~~~~~~~~~~~~~~~v~~--im~~~~~~v~~~~~~~~a~~~m~~~~~--~~lpVvd~~~~lvGi------ 139 (296)
T 3ddj_A 70 LLSTVESYCKDSCSQGDLYHISTTPIID--YMTPNPVTVYNTSDEFTAINIMVTRNF--GSLPVVDINDKPVGI------ 139 (296)
T ss_dssp HHGGGTTCC---CCHHHHHHHHTSBGGG--TSEESCCCEETTSCHHHHHHHHHHHTC--SEEEEECTTSCEEEE------
T ss_pred HHHHhcccccccccchhhHHHhcccHHH--hccCCCEEEcCCCCHHHHHHHHHHcCC--CEEEEEcCCCcEEEE------
Confidence 9998753211 011122456666 799999999999999999999999999 999999999999999
Q ss_pred cCcchhHHHHHhhcChhhhhhhhccCCCCchhHHHHHHHhhhcchhhhhhhhccccCCCCCCCCCCCCCccchhhhcccc
Q 016003 244 GCCDETVAAAITTLSAGDLMAYIDCGGPPEDLVRVVKERLKDKGLEGMLEHFDMSSSLMPYLSTSSSSDEESTATSKLTR 323 (397)
Q Consensus 244 ~~~~~~~~~~~~~ls~~Dl~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (397)
++.+|++..+... + .
T Consensus 140 -------------vt~~dl~~~~~~~--------------------------------~--------------------~ 154 (296)
T 3ddj_A 140 -------------VTEREFLLLYKDL--------------------------------D--------------------E 154 (296)
T ss_dssp -------------EEHHHHGGGGGGS--------------------------------C--------------------C
T ss_pred -------------EeHHHHHHhhhcc--------------------------------c--------------------c
Confidence 4566666532100 0 0
Q ss_pred CCCccccccchhhhhcCCccEEeCCCCcHHHHHHHHHHcCCcEEEEEcCCCcEEEEEehHHHHHHHHHHH
Q 016003 324 SGKHSRSMSYSARMVRRAEAIVCHPTSSLMAVMIQAIAHRVTYVWVIEDDCTLTGIVTFSDLLKVFRKHL 393 (397)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~it~~~~~sl~~v~~~m~~~~i~rl~VVd~~~~lvGvVt~~DIl~~l~~~~ 393 (397)
..+...+|..+++++.+++++.++++.|.+++++++||+|++|+++|+||..||++++.+..
T Consensus 155 --------~~~v~~~m~~~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~~~ 216 (296)
T 3ddj_A 155 --------IFPVKVFMSTKVQTIYKEVRLDQAVKLMLRRGFRRLPVIDDDNKVVGIVTVVNAIKQLAKAV 216 (296)
T ss_dssp --------CCBHHHHSBCSCCCEETTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHHHHH
T ss_pred --------cccHHHhhcCCCeEECCCCCHHHHHHHHHHcCCCEEEEEcCCCEEEEEEEHHHHHHHHHHHH
Confidence 00122457789999999999999999999999999999998899999999999999987543
|
| >3kh5_A Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, archaea, unknown function; HET: ADP AMP; 2.10A {Methanocaldococcus jannaschii} PDB: 3lfz_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=1.6e-22 Score=191.20 Aligned_cols=187 Identities=18% Similarity=0.204 Sum_probs=154.2
Q ss_pred cchhhhhhcCCCCeEEEeCChhHHHHHHHHhhCCCceEEEEccCCCCCCCCCCCCCCCeEEEEEehhHHHHHHhhcCCCC
Q 016003 7 ADEVSDLCLGKPALRALSISAAIADALSALKNSDESFISVWDCNCCSNHRKLGDACECQCVGKVCMVDVICYLCKDSNSL 86 (397)
Q Consensus 7 ~~~v~dl~~~k~~li~v~~~~tv~~Al~~L~~~~I~s~PV~d~~~~~~~~~~~~~~~~~~vGiv~~~Dil~~l~~~~~l~ 86 (397)
..+++++|. ++++++++++++.+|++.|.++++.++||+|. +++++|+++..|++.++....
T Consensus 83 ~~~v~~im~--~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~-------------~~~~~Givt~~dl~~~~~~~~--- 144 (280)
T 3kh5_A 83 NEPVREIME--ENVITLKENADIDEAIETFLTKNVGGAPIVND-------------ENQLISLITERDVIRALLDKI--- 144 (280)
T ss_dssp TSBGGGTSB--CSCCCEETTCBHHHHHHHHHHTTCSEEEEECT-------------TCBEEEEEEHHHHHHHHGGGS---
T ss_pred hhhHHHhcC--CCCEEECCCCCHHHHHHHHHhCCCCEEEEEcC-------------CCEEEEEEEHHHHHHHHhhcC---
Confidence 568999995 57899999999999999999999999999986 368999999999999887532
Q ss_pred ChhhhhcCChhhhccCCCCCceEEeCCCCCHHHHHHHHh-cCCceEEEeccCcchhhhhhhcccccccccCCCCceeeee
Q 016003 87 SPSLALKQPVSVLLPQLLPPLVMHVEPSCSLLEAMDLML-GGAQNLVVPIKNRLSIKRKQQQKLSSSSLTNHNGREFCWL 165 (397)
Q Consensus 87 ~~~~~~~~~V~~lm~~~~~~~~~~V~~~~sL~~al~~m~-~g~~r~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~II 165 (397)
....+++++|... ++++.+++++.++++.|. +++++++|. ++ ++.+|+|
T Consensus 145 ----~~~~~v~~~m~~~----~~~v~~~~~l~~~~~~~~~~~~~~~~Vv-~~---------------------~~~~Giv 194 (280)
T 3kh5_A 145 ----DENEVIDDYITRD----VIVATPGERLKDVARTMVRNGFRRLPVV-SE---------------------GRLVGII 194 (280)
T ss_dssp ----CTTCBSGGGCBCS----CCCBCTTCBHHHHHHHHHHHTCSEEEEE-ET---------------------TEEEEEE
T ss_pred ----CCCCCHHHHhCCC----CeEECCCCcHHHHHHHHHHcCCCEEEEE-EC---------------------CEEEEEE
Confidence 1235789999654 889999999999999999 799999987 32 3578999
Q ss_pred cHHHHHHHHHhcc-------CCCCCCccCCccccCCCCcCeEEEeCCCcHHHHHHHHHhcCCCCCEEEEEcCCCcEEEee
Q 016003 166 TQEDIIRFILSSI-------SLFSPIPALSIDSLGIISTDVVAVDYHSPASLALEAISRSLFDQTSVAVVDSDGFLIGEI 238 (397)
Q Consensus 166 Tq~DIi~~l~~~~-------~~l~~l~~~ti~~L~~~~~~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~i 238 (397)
|..|+++++.+.. +........++.+ +|+++++++++++++.+|++.|.++++ +.+||+|++|+++|+|
T Consensus 195 t~~dl~~~~~~~~~~~~~~~~~~~~~~~~~v~~--~m~~~~~~v~~~~~l~~a~~~m~~~~~--~~l~Vvd~~g~~~Giv 270 (280)
T 3kh5_A 195 TSTDFIKLLGSDWAFNHMQTGNVREITNVRMEE--IMKRDVITAKEGDKLKKIAEIMVTNDI--GALPVVDENLRIKGII 270 (280)
T ss_dssp EHHHHHHHHTSHHHHHHHHSCCTHHHHHCBHHH--HSBSSCCCBCTTCBHHHHHHHHHHHTC--CEEEEECTTCBEEEEE
T ss_pred EHHHHHHHHhhhhhhhhhcccchhhhhCCcHHH--HhcCCCEEECCCCCHHHHHHHHHHCCC--CEEEEECCCCeEEEEE
Confidence 9999999985321 0111113456665 788999999999999999999999999 9999999999999997
Q ss_pred ccCcccC
Q 016003 239 SPSTLGC 245 (397)
Q Consensus 239 s~~dl~~ 245 (397)
|.+||.+
T Consensus 271 t~~dil~ 277 (280)
T 3kh5_A 271 TEKDVLK 277 (280)
T ss_dssp EHHHHGG
T ss_pred eHHHHHH
Confidence 6555544
|
| >4esy_A CBS domain containing membrane protein; structural genomics, PSI-biology; 2.01A {Sphaerobacter thermophilus} | Back alignment and structure |
|---|
Probab=99.86 E-value=4.6e-22 Score=176.14 Aligned_cols=148 Identities=21% Similarity=0.231 Sum_probs=105.9
Q ss_pred cCCccccCCCCcCeEEEeCCCcHHHHHHHHHhcCCCCCEEEEEcCCCcEEEeeccCcccCcchhHHHHHhhcChhhhhhh
Q 016003 186 ALSIDSLGIISTDVVAVDYHSPASLALEAISRSLFDQTSVAVVDSDGFLIGEISPSTLGCCDETVAAAITTLSAGDLMAY 265 (397)
Q Consensus 186 ~~ti~~L~~~~~~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~is~~dl~~~~~~~~~~~~~ls~~Dl~~~ 265 (397)
..+|++ +|+++++++.+++++.+|+++|.++++ +++||||++|+++|+||.+||.+.... .........
T Consensus 17 ~~~V~d--iM~~~v~~v~~~~tl~~a~~~m~~~~~--~~~pVvd~~g~lvGiit~~Dll~~~~~-------~~~~~~~~~ 85 (170)
T 4esy_A 17 QVPIRD--ILTSPVVTVREDDTLDAVAKTMLEHQI--GCAPVVDQNGHLVGIITESDFLRGSIP-------FWIYEASEI 85 (170)
T ss_dssp TSBGGG--GCCSCCCCEETTSBHHHHHHHHHHTTC--SEEEEECTTSCEEEEEEGGGGGGGTCC-------TTHHHHHHH
T ss_pred CCCHHH--hcCCCCcEECCcCcHHHHHHHHHHcCC--eEEEEEcCCccEEEEEEHHHHHHHHhh-------ccccchhhh
Confidence 345666 799999999999999999999999999 999999999999999887777662200 000000000
Q ss_pred hccCCCCchhHHHHHHHhhhcchhhhhhhhccccCCCCCCCCCCCCCccchhhhccccCCCccccccchhhhhcCCccEE
Q 016003 266 IDCGGPPEDLVRVVKERLKDKGLEGMLEHFDMSSSLMPYLSTSSSSDEESTATSKLTRSGKHSRSMSYSARMVRRAEAIV 345 (397)
Q Consensus 266 ~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it 345 (397)
.... ........... . . ...+...+|+++++|
T Consensus 86 ~~~~----------------~~~~~~~~~~~---------------------~-----~------~~~~v~~im~~~~~t 117 (170)
T 4esy_A 86 LSRA----------------IPAPEVEHLFE---------------------T-----G------RKLTASAVMTQPVVT 117 (170)
T ss_dssp HTTT----------------SCHHHHHHHHH---------------------H-----H------TTCBHHHHCBCCSCC
T ss_pred hhhc----------------cchhhHHhhhc---------------------c-----c------cccchhhhcccCccc
Confidence 0000 00000000000 0 0 011234578999999
Q ss_pred eCCCCcHHHHHHHHHHcCCcEEEEEcCCCcEEEEEehHHHHHHHHHHH
Q 016003 346 CHPTSSLMAVMIQAIAHRVTYVWVIEDDCTLTGIVTFSDLLKVFRKHL 393 (397)
Q Consensus 346 ~~~~~sl~~v~~~m~~~~i~rl~VVd~~~~lvGvVt~~DIl~~l~~~~ 393 (397)
|++++++.+|+.+|.++++|++||+|+ |+++||||++||+++++.+.
T Consensus 118 v~~~~~l~~a~~~m~~~~~~~lpVvd~-g~lvGivt~~Dil~~l~~~~ 164 (170)
T 4esy_A 118 AAPEDSVGSIADQMRRHGIHRIPVVQD-GVPVGIVTRRDLLKLLLLEE 164 (170)
T ss_dssp BCTTSBHHHHHHHHHHTTCSEEEEEET-TEEEEEEEHHHHTTTSCCC-
T ss_pred CCcchhHHHHHHHHHHcCCcEEEEEEC-CEEEEEEEHHHHHHHHHhcc
Confidence 999999999999999999999999985 89999999999999987653
|
| >2yzq_A Putative uncharacterized protein PH1780; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; HET: SAM; 1.63A {Pyrococcus horikoshii} SCOP: d.37.1.1 d.37.1.1 | Back alignment and structure |
|---|
Probab=99.85 E-value=1.6e-21 Score=184.90 Aligned_cols=190 Identities=19% Similarity=0.228 Sum_probs=146.1
Q ss_pred ccchhhhhhcCCCCeEEEeCChhHHHHHHHHhhCCCceEEEEccCCCCCCCCCCCCCCCeEEEEEehhHHHH-HHhhcCC
Q 016003 6 LADEVSDLCLGKPALRALSISAAIADALSALKNSDESFISVWDCNCCSNHRKLGDACECQCVGKVCMVDVIC-YLCKDSN 84 (397)
Q Consensus 6 ~~~~v~dl~~~k~~li~v~~~~tv~~Al~~L~~~~I~s~PV~d~~~~~~~~~~~~~~~~~~vGiv~~~Dil~-~l~~~~~ 84 (397)
...+++++|. ++++++++++++.+|++.|.++++..+||+|.+ ++++|+++..|++. ++.++.
T Consensus 58 ~~~~v~~~m~--~~~~~v~~~~~l~~a~~~m~~~~~~~~~Vvd~~-------------~~~~Giit~~di~~~~~~~~~- 121 (282)
T 2yzq_A 58 DEEQLAMLVK--RDVPVVKENDTLKKAAKLMLEYDYRRVVVVDSK-------------GKPVGILTVGDIIRRYFAKSE- 121 (282)
T ss_dssp ------CCCB--SCCCEEETTSBHHHHHHHHHHHTCSEEEEECTT-------------SCEEEEEEHHHHHHHTTTTCS-
T ss_pred ccCCHHHHcC--CCCcEECCCCcHHHHHHHHHHcCCCEEEEEcCC-------------CEEEEEEEHHHHHHHHHhccC-
Confidence 3567889984 458899999999999999999999999999963 68999999999998 765421
Q ss_pred CCChhhhhcCChhhhccCCCCCceEEeCCCCCHHHHHHHHh-cCCceEEEeccCcchhhhhhhcccccccccCCCCceee
Q 016003 85 SLSPSLALKQPVSVLLPQLLPPLVMHVEPSCSLLEAMDLML-GGAQNLVVPIKNRLSIKRKQQQKLSSSSLTNHNGREFC 163 (397)
Q Consensus 85 l~~~~~~~~~~V~~lm~~~~~~~~~~V~~~~sL~~al~~m~-~g~~r~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (397)
.....+++++|... ++++.+++++.++++.|. +++++++|.+++ ++.+|
T Consensus 122 -----~~~~~~v~~~m~~~----~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~---------------------~~~~G 171 (282)
T 2yzq_A 122 -----KYKGVEIEPYYQRY----VSIVWEGTPLKAALKALLLSNSMALPVVDSE---------------------GNLVG 171 (282)
T ss_dssp -----GGGGCBSTTTSBSC----CCCEETTSBHHHHHHHHHTCSSSEEEEECTT---------------------SCEEE
T ss_pred -----CcccCcHHHHhCCC----CEEECCCCCHHHHHHHHHHcCCcEEEEEcCC---------------------CeEEE
Confidence 22356889999644 889999999999999999 789999887532 46789
Q ss_pred eecHHHHH------HHHHhcc---------------CC-C----CCCccCCccccCCCCcCeEEEeCCCcHHHHHHHHHh
Q 016003 164 WLTQEDII------RFILSSI---------------SL-F----SPIPALSIDSLGIISTDVVAVDYHSPASLALEAISR 217 (397)
Q Consensus 164 IITq~DIi------~~l~~~~---------------~~-l----~~l~~~ti~~L~~~~~~v~tv~~~~~~~~a~~~m~~ 217 (397)
+||..|++ +++..+. .. + ......++++ +|+++++++++++++.+|+++|.+
T Consensus 172 iit~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~--im~~~~~~v~~~~~l~~a~~~m~~ 249 (282)
T 2yzq_A 172 IVDETDLLRDSEIVRIMKSTELAASSEEEWILESHPTLLFEKFELQLPNKPVAE--IMTRDVIVATPHMTVHEVALKMAK 249 (282)
T ss_dssp EEEGGGGGGCGGGCC--------------------------------CCCBGGG--TCBSSCCCBCTTSBHHHHHHHHHH
T ss_pred EEEHHHHhhhhhhhhhhccchhhhhhhhhhhcccchHHHHhHhhhhhccCCHHH--hcCCCCceeCCCCCHHHHHHHHHH
Confidence 99999999 6653100 00 0 1223556665 899999999999999999999999
Q ss_pred cCCCCCEEEEEcCCCcEEEeeccCcccC
Q 016003 218 SLFDQTSVAVVDSDGFLIGEISPSTLGC 245 (397)
Q Consensus 218 ~~i~~s~vpVVd~~g~lvG~is~~dl~~ 245 (397)
+++ +.+||||++|+++|+||.+||.+
T Consensus 250 ~~~--~~lpVvd~~~~lvGiit~~Dil~ 275 (282)
T 2yzq_A 250 YSI--EQLPVIRGEGDLIGLIRDFDLLK 275 (282)
T ss_dssp HTC--SEEEEEETTTEEEEEEEHHHHGG
T ss_pred cCc--ceeEEECCCCCEEEEEeHHHHHH
Confidence 999 99999998889999966544444
|
| >3t4n_C Nuclear protein SNF4; CBS domain, nucleotide binding, cytosol, protein binding; HET: ADP; 2.30A {Saccharomyces cerevisiae} PDB: 3tdh_C* 3te5_C* 2qlv_C | Back alignment and structure |
|---|
Probab=99.83 E-value=1.8e-20 Score=181.71 Aligned_cols=181 Identities=15% Similarity=0.185 Sum_probs=145.4
Q ss_pred CCCeEEEeCChhHHHHHHHHhhCCCceEEEEccCCCCCCCCCCCCCCCeEEEEEehhHHHHHHhhcCCCCChhhhhcCCh
Q 016003 17 KPALRALSISAAIADALSALKNSDESFISVWDCNCCSNHRKLGDACECQCVGKVCMVDVICYLCKDSNSLSPSLALKQPV 96 (397)
Q Consensus 17 k~~li~v~~~~tv~~Al~~L~~~~I~s~PV~d~~~~~~~~~~~~~~~~~~vGiv~~~Dil~~l~~~~~l~~~~~~~~~~V 96 (397)
.++++++++++++.+|++.|.++++..+||+|..+.+ .+++++|+++..|++.++..... .....+.+|
T Consensus 121 ~~~~v~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~--------~~~~l~Givt~~di~~~l~~~~~---~~~~~~~~v 189 (323)
T 3t4n_C 121 QLDTASIHPSRPLFEACLKMLESRSGRIPLIDQDEET--------HREIVVSVLTQYRILKFVALNCR---ETHFLKIPI 189 (323)
T ss_dssp ---CCCBCTTSBHHHHHHHHHHHTCSEEEEEEECTTT--------CCEEEEEEEEHHHHHHHHHHHCG---GGGGCCSBG
T ss_pred CCCceEeCCCCcHHHHHHHHHhCCeeEEEEEecCCCC--------CccceEEEecHHHHHHHHHhcCC---chhhhhCcH
Confidence 3678999999999999999999999999999974210 01149999999999999875321 123456789
Q ss_pred hhh---ccCCCCCceEEeCCCCCHHHHHHHHh-cCCceEEEeccCcchhhhhhhcccccccccCCCCceeeeecHHHHHH
Q 016003 97 SVL---LPQLLPPLVMHVEPSCSLLEAMDLML-GGAQNLVVPIKNRLSIKRKQQQKLSSSSLTNHNGREFCWLTQEDIIR 172 (397)
Q Consensus 97 ~~l---m~~~~~~~~~~V~~~~sL~~al~~m~-~g~~r~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IITq~DIi~ 172 (397)
+++ |... ++++.+++++.+|++.|. +++++++|++++ ++.+|+||..|+++
T Consensus 190 ~~~~~~m~~~----~~~v~~~~~~~~~~~~m~~~~~~~~pVvd~~---------------------~~~~Giit~~dl~~ 244 (323)
T 3t4n_C 190 GDLNIITQDN----MKSCQMTTPVIDVIQMLTQGRVSSVPIIDEN---------------------GYLINVYEAYDVLG 244 (323)
T ss_dssp GGTTCSBCTT----CCCBCTTSBHHHHHHHHHHHTCSEEEEECTT---------------------CBEEEEEETTHHHH
T ss_pred HHcCCCCCCC----cEEECCCCcHHHHHHHHHHcCCCEEEEECCC---------------------CeEEEEEeHHHHHH
Confidence 999 7544 899999999999999999 799999998632 46789999999999
Q ss_pred HHHhccCCCCCCccCCccccCCCCc------CeEEEeCCCcHHHHHHHHHhcCCCCCEEEEEcCCCcEEEeecc
Q 016003 173 FILSSISLFSPIPALSIDSLGIIST------DVVAVDYHSPASLALEAISRSLFDQTSVAVVDSDGFLIGEISP 240 (397)
Q Consensus 173 ~l~~~~~~l~~l~~~ti~~L~~~~~------~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~is~ 240 (397)
++.+... .....++++ +|++ +++++.+++++.+|++.|.++++ ..+||||++|+++|+||.
T Consensus 245 ~~~~~~~---~~~~~~v~~--~m~~~~~~~~~~~~v~~~~~l~~~~~~m~~~~~--~~l~Vvd~~~~l~Giit~ 311 (323)
T 3t4n_C 245 LIKGGIY---NDLSLSVGE--ALMRRSDDFEGVYTCTKNDKLSTIMDNIRKARV--HRFFVVDDVGRLVGVLTL 311 (323)
T ss_dssp HHHTTHH---HHTTSBHHH--HGGGSCTTCCCCEEECTTCBHHHHHHHHHHSCC--CEEEEECTTSBEEEEEEH
T ss_pred HHhhchh---hhccCCHHH--HHhhccccCCCCEEECCCCCHHHHHHHHHHhCC--CEEEEECCCCcEEEEEEH
Confidence 9864321 112446665 6776 89999999999999999999999 999999999999999553
|
| >2v8q_E 5'-AMP-activated protein kinase subunit gamma-1; phosphorylation, nucleotide-binding, serine/threonine-protei kinase, magnesium, CBS domain; HET: AMP; 2.10A {Rattus norvegicus} SCOP: d.37.1.1 d.37.1.1 PDB: 2v92_E* 2v9j_E* 2y8l_E* 2y8q_E* 2y94_E* 2ya3_E* | Back alignment and structure |
|---|
Probab=99.80 E-value=8.7e-20 Score=177.54 Aligned_cols=186 Identities=15% Similarity=0.134 Sum_probs=145.3
Q ss_pred hhhhcCCCCeEEEeCChhHHHHHHHHhhCCCceEEEEccCCCCCCCCCCCCCCCeEEEEEehhHHHHHHhhcCCCCChhh
Q 016003 11 SDLCLGKPALRALSISAAIADALSALKNSDESFISVWDCNCCSNHRKLGDACECQCVGKVCMVDVICYLCKDSNSLSPSL 90 (397)
Q Consensus 11 ~dl~~~k~~li~v~~~~tv~~Al~~L~~~~I~s~PV~d~~~~~~~~~~~~~~~~~~vGiv~~~Dil~~l~~~~~l~~~~~ 90 (397)
+++| .++++++++++++.+|++.|.++++..+||+|.+ .++++|+|+..|++.++...........
T Consensus 121 ~~im--~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~------------~~~~~Givt~~dl~~~~~~~~~~~~~~~ 186 (330)
T 2v8q_E 121 LQDS--FKPLVCISPNASLFDAVSSLIRNKIHRLPVIDPE------------SGNTLYILTHKRILKFLKLFITEFPKPE 186 (330)
T ss_dssp SSSS--CCCCCCBCTTSBHHHHHHHHHHHTCSCEEEECTT------------TCCEEEEECHHHHHHHHHHHSCSSSCCG
T ss_pred hhcc--cCCceEeCCCCCHHHHHHHHHHCCCCeEEEEeCC------------CCcEEEEEcHHHHHHHHHHHhhccCchh
Confidence 4555 4679999999999999999999999999999961 2689999999999999865211111123
Q ss_pred hhcCChhhh--ccCCCCCceEEeCCCCCHHHHHHHHh-cCCceEEEeccCcchhhhhhhcccccccccCCCCceeeeecH
Q 016003 91 ALKQPVSVL--LPQLLPPLVMHVEPSCSLLEAMDLML-GGAQNLVVPIKNRLSIKRKQQQKLSSSSLTNHNGREFCWLTQ 167 (397)
Q Consensus 91 ~~~~~V~~l--m~~~~~~~~~~V~~~~sL~~al~~m~-~g~~r~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IITq 167 (397)
.+..+++++ |. ..+++++.+++++.++++.|. +++++++|.+++ ++.+|+||.
T Consensus 187 ~~~~~v~~~~v~~---~~~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~---------------------~~l~Giit~ 242 (330)
T 2v8q_E 187 FMSKSLEELQIGT---YANIAMVRTTTPVYVALGIFVQHRVSALPVVDEK---------------------GRVVDIYSK 242 (330)
T ss_dssp GGGSBHHHHTCSB---CSSCCCEETTCBHHHHHHHHHHHCCSEEEEECTT---------------------SBEEEEEEG
T ss_pred hhcCCHHHhcccC---cCCceEECCCCCHHHHHHHHHHcCCCeEEEECCC---------------------CcEEEEEEH
Confidence 456778887 43 134889999999999999999 789999988532 467899999
Q ss_pred HHHHHHHHhccCCCCCCccCCcccc----CCCCcCeEEEeCCCcHHHHHHHHHhcCCCCCEEEEEcCCCcEEEeec
Q 016003 168 EDIIRFILSSISLFSPIPALSIDSL----GIISTDVVAVDYHSPASLALEAISRSLFDQTSVAVVDSDGFLIGEIS 239 (397)
Q Consensus 168 ~DIi~~l~~~~~~l~~l~~~ti~~L----~~~~~~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~is 239 (397)
.|+++++.+.. +. ....++.++ ..|+++++++.+++++.+|++.|.++++ ..+||||++|+++|+||
T Consensus 243 ~dl~~~~~~~~--~~-~~~~~v~~~~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~--~~l~Vvd~~g~l~Giit 313 (330)
T 2v8q_E 243 FDVINLAAEKT--YN-NLDVSVTKALQHRSHYFEGVLKCYLHETLEAIINRLVEAEV--HRLVVVDEHDVVKGIVS 313 (330)
T ss_dssp GGTGGGGGSSC--CC-CCSSBHHHHGGGCCSCCCSCCEECTTSBHHHHHHHHHHHTC--SEEEEECTTSBEEEEEE
T ss_pred HHHHHHHhccc--cc-cccCcHHHHHhccccccCCCeEECCCCcHHHHHHHHHHCCC--cEEEEEcCCCcEEEEEe
Confidence 99998765321 11 113455552 1236899999999999999999999999 99999999999999955
|
| >2qrd_G Protein C1556.08C; AMPK, ADP, ATP-binding, kinase, nucleotide-binding, serine/T protein kinase, transferase, CBS domain; HET: ADP ATP; 2.41A {Schizosaccharomyces pombe} PDB: 2qrc_G* 2qr1_G* 2qre_G* 2oox_G* 2ooy_G* | Back alignment and structure |
|---|
Probab=99.80 E-value=4e-19 Score=172.97 Aligned_cols=183 Identities=14% Similarity=0.123 Sum_probs=143.4
Q ss_pred hcCCCCeEEEeCChhHHHHHHHHhhCCCceEEEEccCCCCCCCCCCCCCCCeEEEEEehhHHHHHHhhcCCCCChhhhhc
Q 016003 14 CLGKPALRALSISAAIADALSALKNSDESFISVWDCNCCSNHRKLGDACECQCVGKVCMVDVICYLCKDSNSLSPSLALK 93 (397)
Q Consensus 14 ~~~k~~li~v~~~~tv~~Al~~L~~~~I~s~PV~d~~~~~~~~~~~~~~~~~~vGiv~~~Dil~~l~~~~~l~~~~~~~~ 93 (397)
|....+++++++++|+.+|++.|.++++..+||+|..+.. ..+.++|+++..||+.++..+.. .....+
T Consensus 113 m~~~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~--------~~~~~~Givt~~dl~~~~~~~~~---~~~~~~ 181 (334)
T 2qrd_G 113 GAIPPETIYVHPMHSLMDACLAMSKSRARRIPLIDVDGET--------GSEMIVSVLTQYRILKFISMNCK---ETAMLR 181 (334)
T ss_dssp TCSCSSCCCBCTTSBHHHHHHHHHHSCCSEEEEEEEETTT--------TEEEEEEEEEHHHHHHHHHHHCG---GGGGCC
T ss_pred ccCCCceeeeCCCCcHHHHHHHHHHCCceEEEEEeCCCCc--------CccceEEEeeHHHHHHHHHhhcc---chhhhh
Confidence 4333345999999999999999999999999999963210 00129999999999999875211 112346
Q ss_pred CChhhh---ccCCCCCceEEeCCCCCHHHHHHHHh-cCCceEEEeccCcchhhhhhhcccccccccCCCCceeeeecHHH
Q 016003 94 QPVSVL---LPQLLPPLVMHVEPSCSLLEAMDLML-GGAQNLVVPIKNRLSIKRKQQQKLSSSSLTNHNGREFCWLTQED 169 (397)
Q Consensus 94 ~~V~~l---m~~~~~~~~~~V~~~~sL~~al~~m~-~g~~r~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IITq~D 169 (397)
.+|+++ |... ++++.+++++.+|++.|. +++++++|++++ ++.+|+||..|
T Consensus 182 ~~v~~l~~~m~~~----~~~v~~~~~~~~~~~~m~~~~~~~~~Vvd~~---------------------~~~~Giit~~d 236 (334)
T 2qrd_G 182 VPLNQMTIGTWSN----LATASMETKVYDVIKMLAEKNISAVPIVNSE---------------------GTLLNVYESVD 236 (334)
T ss_dssp CBGGGSSCSBCSS----CCCBCTTSBHHHHHHHHHHHTCSEEEEECTT---------------------CBEEEEEETHH
T ss_pred CcHHHhCCcccCC----ceEECCCCcHHHHHHHHHHcCCcEEEEEcCC---------------------CcEEEEEEHHH
Confidence 788885 6544 889999999999999999 789999888532 46789999999
Q ss_pred HHHHHHhccCCCCCCccCCccccCCCCc------CeEEEeCCCcHHHHHHHHHhcCCCCCEEEEEcCCCcEEEeec
Q 016003 170 IIRFILSSISLFSPIPALSIDSLGIIST------DVVAVDYHSPASLALEAISRSLFDQTSVAVVDSDGFLIGEIS 239 (397)
Q Consensus 170 Ii~~l~~~~~~l~~l~~~ti~~L~~~~~------~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~is 239 (397)
+++++.+... .....++.+ +|++ +++++++++++.+|++.|.++++ ..+||||++|+++|+||
T Consensus 237 l~~~~~~~~~---~~~~~~v~~--~m~~~~~~~~~~~~v~~~~~l~~~~~~m~~~~~--~~l~Vvd~~g~l~Giit 305 (334)
T 2qrd_G 237 VMHLIQDGDY---SNLDLSVGE--ALLKRPANFDGVHTCRATDRLDGIFDAIKHSRV--HRLFVVDENLKLEGILS 305 (334)
T ss_dssp HHHHHTTSCG---GGGGSBHHH--HHTTCCTTCCCCCEECTTCBHHHHHHHHHHSCC--CEEEEECTTCBEEEEEE
T ss_pred HHHHhhcccc---ccccCcHHH--HHhcccccCCCCEEECCCCcHHHHHHHHHHcCC--CEEEEECCCCeEEEEEe
Confidence 9998854211 112455655 6773 89999999999999999999999 99999999999999954
|
| >3lv9_A Putative transporter; CBS domain, PSI, MCSG, structural genomics, protein structur initiative, midwest center for structural genomics; 2.40A {Clostridium difficile 630} | Back alignment and structure |
|---|
Probab=99.76 E-value=4.1e-18 Score=146.79 Aligned_cols=125 Identities=14% Similarity=0.163 Sum_probs=103.6
Q ss_pred CccCCccccCCCCc--CeEEEeCCCcHHHHHHHHHhcCCCCCEEEEEcCC-CcEEEeeccCcccCcchhHHHHHhhcChh
Q 016003 184 IPALSIDSLGIIST--DVVAVDYHSPASLALEAISRSLFDQTSVAVVDSD-GFLIGEISPSTLGCCDETVAAAITTLSAG 260 (397)
Q Consensus 184 l~~~ti~~L~~~~~--~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~-g~lvG~is~~dl~~~~~~~~~~~~~ls~~ 260 (397)
+...++++ +|++ +++++.+++++.+|++.|.++++ +++||+|++ |+++|+ ++.+
T Consensus 20 l~~~~v~d--iM~~~~~~~~v~~~~~~~~a~~~m~~~~~--~~~pVvd~~~~~lvGi-------------------vt~~ 76 (148)
T 3lv9_A 20 FEEKKIRE--IMVPRTDMVCIYESDSEEKILAILKEEGV--TRYPVCRKNKDDILGF-------------------VHIR 76 (148)
T ss_dssp GGTCBGGG--TSEETTTCCCEETTCCHHHHHHHHHHSCC--SEEEEESSSTTSEEEE-------------------EEHH
T ss_pred cCCCCHHH--ccccHHHeEEECCCCCHHHHHHHHHHCCC--CEEEEEcCCCCcEEEE-------------------EEHH
Confidence 34566766 7998 89999999999999999999999 999999988 899999 5567
Q ss_pred hhhhhhccCCCCchhHHHHHHHhhhcchhhhhhhhccccCCCCCCCCCCCCCccchhhhccccCCCccccccchhhhhcC
Q 016003 261 DLMAYIDCGGPPEDLVRVVKERLKDKGLEGMLEHFDMSSSLMPYLSTSSSSDEESTATSKLTRSGKHSRSMSYSARMVRR 340 (397)
Q Consensus 261 Dl~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (397)
|++..+.. .. . .. ...+|
T Consensus 77 dl~~~~~~-----------------~~--------~----------------------------~~--------v~~~m- 94 (148)
T 3lv9_A 77 DLYNQKIN-----------------EN--------K----------------------------IE--------LEEIL- 94 (148)
T ss_dssp HHHHHHHH-----------------HS--------C----------------------------CC--------GGGTC-
T ss_pred HHHHHHhc-----------------CC--------C----------------------------cc--------HHHhc-
Confidence 77652210 00 0 00 11346
Q ss_pred CccEEeCCCCcHHHHHHHHHHcCCcEEEEEcCCCcEEEEEehHHHHHHHHHHH
Q 016003 341 AEAIVCHPTSSLMAVMIQAIAHRVTYVWVIEDDCTLTGIVTFSDLLKVFRKHL 393 (397)
Q Consensus 341 ~~~it~~~~~sl~~v~~~m~~~~i~rl~VVd~~~~lvGvVt~~DIl~~l~~~~ 393 (397)
.++++|++++++.+++.+|.+++++++||+|++|+++|+||+.||++++..++
T Consensus 95 ~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~g~~~Giit~~dil~~l~~~i 147 (148)
T 3lv9_A 95 RDIIYISENLTIDKALERIRKEKLQLAIVVDEYGGTSGVVTIEDILEEIVGEI 147 (148)
T ss_dssp BCCEEEETTSBHHHHHHHHHHHTCSEEEEECTTSSEEEEEEHHHHHHHHHHTC
T ss_pred CCCeEECCCCCHHHHHHHHHhcCCeEEEEEeCCCCEEEEEEHHHHHHHHhCcC
Confidence 78999999999999999999999999999999999999999999999998754
|
| >3jtf_A Magnesium and cobalt efflux protein; CBS domain, CORC, AMP, structural genomics, PSI-2, protein S initiative; HET: MSE AMP; 2.00A {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=99.75 E-value=5.8e-18 Score=142.71 Aligned_cols=123 Identities=22% Similarity=0.313 Sum_probs=97.8
Q ss_pred cCCccccCCCC--cCeEEEeCCCcHHHHHHHHHhcCCCCCEEEEEcCC-CcEEEeeccCcccCcchhHHHHHhhcChhhh
Q 016003 186 ALSIDSLGIIS--TDVVAVDYHSPASLALEAISRSLFDQTSVAVVDSD-GFLIGEISPSTLGCCDETVAAAITTLSAGDL 262 (397)
Q Consensus 186 ~~ti~~L~~~~--~~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~-g~lvG~is~~dl~~~~~~~~~~~~~ls~~Dl 262 (397)
..++++ +|+ ++++++.+++++.+|++.|.++++ +++||+|++ |+++|+|| .+|+
T Consensus 4 ~~~v~d--iM~~~~~~~~v~~~~~~~~a~~~m~~~~~--~~~pVvd~~~~~~~Givt-------------------~~dl 60 (129)
T 3jtf_A 4 ERTVAD--IMVPRSRMDLLDISQPLPQLLATIIETAH--SRFPVYEDDRDNIIGILL-------------------AKDL 60 (129)
T ss_dssp CCBHHH--HCEEGGGCCCEETTSCHHHHHHHHHHSCC--SEEEEESSSTTCEEEEEE-------------------GGGG
T ss_pred CCCHHH--hCccHHHeEEECCCCCHHHHHHHHHHcCC--CEEEEEcCCCCcEEEEEE-------------------HHHH
Confidence 345655 688 679999999999999999999999 999999986 89999955 5555
Q ss_pred hhhhccCCCCchhHHHHHHHhhhcchhhhhhhhccccCCCCCCCCCCCCCccchhhhccccCCCccccccchhhhhcCCc
Q 016003 263 MAYIDCGGPPEDLVRVVKERLKDKGLEGMLEHFDMSSSLMPYLSTSSSSDEESTATSKLTRSGKHSRSMSYSARMVRRAE 342 (397)
Q Consensus 263 ~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (397)
+...... ... ...+|. +
T Consensus 61 ~~~~~~~------------------------------------------------------~~~--------v~~~m~-~ 77 (129)
T 3jtf_A 61 LRYMLEP------------------------------------------------------ALD--------IRSLVR-P 77 (129)
T ss_dssp GGGGTCT------------------------------------------------------TSC--------GGGGCB-C
T ss_pred HhHhccC------------------------------------------------------CcC--------HHHHhC-C
Confidence 4421000 000 012343 5
Q ss_pred cEEeCCCCcHHHHHHHHHHcCCcEEEEEcCCCcEEEEEehHHHHHHHHHHHh
Q 016003 343 AIVCHPTSSLMAVMIQAIAHRVTYVWVIEDDCTLTGIVTFSDLLKVFRKHLE 394 (397)
Q Consensus 343 ~it~~~~~sl~~v~~~m~~~~i~rl~VVd~~~~lvGvVt~~DIl~~l~~~~~ 394 (397)
++++.+++++.+++.+|.+++++++||+|++|+++|+||+.||++++..+++
T Consensus 78 ~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~g~~~Giit~~Dil~~l~gei~ 129 (129)
T 3jtf_A 78 AVFIPEVKRLNVLLREFRASRNHLAIVIDEHGGISGLVTMEDVLEQIVGDIE 129 (129)
T ss_dssp CCEEETTCBHHHHHHHHHTSSCCEEEEECC-CCEEEEEEHHHHHHHHHHTC-
T ss_pred CeEeCCCCcHHHHHHHHHhcCCeEEEEEeCCCCEEEEEEHHHHHHHHhCCCC
Confidence 8899999999999999999999999999998999999999999999987653
|
| >3lhh_A CBS domain protein; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG, cell membrane; HET: MSE AMP; 2.10A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=99.75 E-value=4.4e-18 Score=150.92 Aligned_cols=124 Identities=19% Similarity=0.282 Sum_probs=101.4
Q ss_pred ccCCccccCCCC--cCeEEEeCCCcHHHHHHHHHhcCCCCCEEEEEcCC-CcEEEeeccCcccCcchhHHHHHhhcChhh
Q 016003 185 PALSIDSLGIIS--TDVVAVDYHSPASLALEAISRSLFDQTSVAVVDSD-GFLIGEISPSTLGCCDETVAAAITTLSAGD 261 (397)
Q Consensus 185 ~~~ti~~L~~~~--~~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~-g~lvG~is~~dl~~~~~~~~~~~~~ls~~D 261 (397)
...++++ +|+ ++++++++++++.+|++.|.++++ +++||+|++ |+++|+ ++.+|
T Consensus 40 ~~~~v~d--iM~~~~~~~~v~~~~~v~~a~~~m~~~~~--~~~pVvd~~~~~lvGi-------------------vt~~d 96 (172)
T 3lhh_A 40 DERTISS--LMVPRSDIVFLDLNLPLDANLRTVMQSPH--SRFPVCRNNVDDMVGI-------------------ISAKQ 96 (172)
T ss_dssp ---CTTT--TSEEGGGCCCEETTSCHHHHHHHHHTCCC--SEEEEESSSTTSEEEE-------------------EEHHH
T ss_pred CCCCHHH--hCccHHHeEEEcCCCCHHHHHHHHHhCCC--CEEEEEeCCCCeEEEE-------------------EEHHH
Confidence 3456665 798 789999999999999999999999 999999988 899999 55677
Q ss_pred hhhhhccCCCCchhHHHHHHHhhhcchhhhhhhhccccCCCCCCCCCCCCCccchhhhccccCCCccccccchhhhhcCC
Q 016003 262 LMAYIDCGGPPEDLVRVVKERLKDKGLEGMLEHFDMSSSLMPYLSTSSSSDEESTATSKLTRSGKHSRSMSYSARMVRRA 341 (397)
Q Consensus 262 l~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (397)
++...... .. .+...+| .
T Consensus 97 l~~~~~~~-----------------------------------------------------~~--------~~v~~im-~ 114 (172)
T 3lhh_A 97 LLSESIAG-----------------------------------------------------ER--------LELVDLV-K 114 (172)
T ss_dssp HHHHHHTT-----------------------------------------------------CC--------CCGGGGC-B
T ss_pred HHHHHhhc-----------------------------------------------------Cc--------ccHHHHh-c
Confidence 76522100 00 0012357 8
Q ss_pred ccEEeCCCCcHHHHHHHHHHcCCcEEEEEcCCCcEEEEEehHHHHHHHHHHH
Q 016003 342 EAIVCHPTSSLMAVMIQAIAHRVTYVWVIEDDCTLTGIVTFSDLLKVFRKHL 393 (397)
Q Consensus 342 ~~it~~~~~sl~~v~~~m~~~~i~rl~VVd~~~~lvGvVt~~DIl~~l~~~~ 393 (397)
++++|++++++.+++.+|.+++++++||+|++|+++||||+.||++++..++
T Consensus 115 ~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd~~g~lvGiit~~Dil~~l~~~~ 166 (172)
T 3lhh_A 115 NCNFVPNSLSGMELLEHFRTTGSQMVFVVDEYGDLKGLVTLQDMMDALTGEF 166 (172)
T ss_dssp CCEEEETTCCHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHHTTC
T ss_pred CCeEeCCCCCHHHHHHHHHHcCCeEEEEEeCCCCEEEEeeHHHHHHHHhCCC
Confidence 9999999999999999999999999999999999999999999999998754
|
| >3i8n_A Uncharacterized protein VP2912; APC64273.1, vibrio parahaemolyticus RIMD 2210633, structural genomics, PSI-2; 2.15A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=99.75 E-value=6.5e-18 Score=142.45 Aligned_cols=122 Identities=19% Similarity=0.251 Sum_probs=98.4
Q ss_pred cCCccccCCCC--cCeEEEeCCCcHHHHHHHHHhcCCCCCEEEEEcCC-CcEEEeeccCcccCcchhHHHHHhhcChhhh
Q 016003 186 ALSIDSLGIIS--TDVVAVDYHSPASLALEAISRSLFDQTSVAVVDSD-GFLIGEISPSTLGCCDETVAAAITTLSAGDL 262 (397)
Q Consensus 186 ~~ti~~L~~~~--~~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~-g~lvG~is~~dl~~~~~~~~~~~~~ls~~Dl 262 (397)
..++++ +|+ .+++++.+++++.+|++.|.++++ +++||+|++ |+++|+ ++.+|+
T Consensus 5 ~~~v~~--iM~~~~~v~~v~~~~~~~~a~~~m~~~~~--~~~pVvd~~~~~~~Gi-------------------vt~~dl 61 (130)
T 3i8n_A 5 DVPVTQ--VMTPRPVVFRVDATMTINEFLDKHKDTPF--SRPLVYSEQKDNIIGF-------------------VHRLEL 61 (130)
T ss_dssp --CCTT--TSCCBCCCCEEETTSBHHHHHHHTTTCSC--SCCEEESSSTTCEEEE-------------------CCHHHH
T ss_pred cCCHhh--CCCcHHHEEEEcCCCCHHHHHHHHHhCCC--CEEEEEeCCCCcEEEE-------------------EEHHHH
Confidence 455665 788 468899999999999999999999 999999987 899999 667777
Q ss_pred hhhhccCCCCchhHHHHHHHhhhcchhhhhhhhccccCCCCCCCCCCCCCccchhhhccccCCCccccccchhhhhcCCc
Q 016003 263 MAYIDCGGPPEDLVRVVKERLKDKGLEGMLEHFDMSSSLMPYLSTSSSSDEESTATSKLTRSGKHSRSMSYSARMVRRAE 342 (397)
Q Consensus 263 ~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (397)
+...... . . . .....+| .+
T Consensus 62 ~~~~~~~--------------------------------~--------------~------~--------~~v~~~m-~~ 80 (130)
T 3i8n_A 62 FKMQQSG--------------------------------S--------------G------Q--------KQLGAVM-RP 80 (130)
T ss_dssp HHHHHTT--------------------------------T--------------T------T--------SBHHHHS-EE
T ss_pred HHHHhcC--------------------------------C--------------C------c--------CCHHHHh-cC
Confidence 7632100 0 0 0 0012345 46
Q ss_pred cEEeCCCCcHHHHHHHHHHcCCcEEEEEcCCCcEEEEEehHHHHHHHHH
Q 016003 343 AIVCHPTSSLMAVMIQAIAHRVTYVWVIEDDCTLTGIVTFSDLLKVFRK 391 (397)
Q Consensus 343 ~it~~~~~sl~~v~~~m~~~~i~rl~VVd~~~~lvGvVt~~DIl~~l~~ 391 (397)
+++|++++++.+++++|.+++++++||+|++|+++|+||+.||++++..
T Consensus 81 ~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~g~~vGivt~~dil~~l~g 129 (130)
T 3i8n_A 81 IQVVLNNTALPKVFDQMMTHRLQLALVVDEYGTVLGLVTLEDIFEHLVG 129 (130)
T ss_dssp CCEEETTSCHHHHHHHHHHHTCCEEEEECTTSCEEEEEEHHHHHHHHHT
T ss_pred CcCcCCCCcHHHHHHHHHHcCCeEEEEEcCCCCEEEEEEHHHHHHHHcC
Confidence 8999999999999999999999999999999999999999999999864
|
| >3nqr_A Magnesium and cobalt efflux protein CORC; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: AMP; 2.00A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.75 E-value=8e-18 Score=141.32 Aligned_cols=121 Identities=19% Similarity=0.333 Sum_probs=95.1
Q ss_pred CCccccCCCCc--CeEEEeCCCcHHHHHHHHHhcCCCCCEEEEEcCC-CcEEEeeccCcccCcchhHHHHHhhcChhhhh
Q 016003 187 LSIDSLGIIST--DVVAVDYHSPASLALEAISRSLFDQTSVAVVDSD-GFLIGEISPSTLGCCDETVAAAITTLSAGDLM 263 (397)
Q Consensus 187 ~ti~~L~~~~~--~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~-g~lvG~is~~dl~~~~~~~~~~~~~ls~~Dl~ 263 (397)
.++++ +|++ +++++.+++++.+|++.|.++++ +++||+|++ |+++|+|| .+|++
T Consensus 3 ~~v~d--iM~~~~~~~~v~~~~~~~~a~~~m~~~~~--~~~pVvd~~~~~~vGivt-------------------~~dl~ 59 (127)
T 3nqr_A 3 QRVRD--IMIPRSQMITLKRNQTLDECLDVIIESAH--SRFPVISEDKDHIEGILM-------------------AKDLL 59 (127)
T ss_dssp CBHHH--HSEEGGGCCCEETTCCHHHHHHHHHHHCC--SEEEEESSSTTCEEEEEE-------------------GGGGG
T ss_pred cCHHH--hcccHHHeEEEcCCCCHHHHHHHHHhCCC--CEEEEEcCCCCcEEEEEE-------------------HHHHH
Confidence 34555 6884 49999999999999999999999 999999988 89999955 55554
Q ss_pred hhhccCCCCchhHHHHHHHhhhcchhhhhhhhccccCCCCCCCCCCCCCccchhhhccccCCCccccccchhhhhcCCcc
Q 016003 264 AYIDCGGPPEDLVRVVKERLKDKGLEGMLEHFDMSSSLMPYLSTSSSSDEESTATSKLTRSGKHSRSMSYSARMVRRAEA 343 (397)
Q Consensus 264 ~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (397)
..+... . . ..+...+|. ++
T Consensus 60 ~~~~~~--------------------------------~--------------------~--------~~~v~~~m~-~~ 78 (127)
T 3nqr_A 60 PFMRSD--------------------------------A--------------------E--------AFSMDKVLR-TA 78 (127)
T ss_dssp GGGSTT--------------------------------C--------------------C--------CCCHHHHCB-CC
T ss_pred HHHhcc--------------------------------C--------------------C--------CCCHHHHcC-CC
Confidence 422100 0 0 000123453 47
Q ss_pred EEeCCCCcHHHHHHHHHHcCCcEEEEEcCCCcEEEEEehHHHHHHHHH
Q 016003 344 IVCHPTSSLMAVMIQAIAHRVTYVWVIEDDCTLTGIVTFSDLLKVFRK 391 (397)
Q Consensus 344 it~~~~~sl~~v~~~m~~~~i~rl~VVd~~~~lvGvVt~~DIl~~l~~ 391 (397)
+++++++++.+++.+|.+++++++||+|++|+++|+||+.||++++..
T Consensus 79 ~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~~~Giit~~dll~~l~g 126 (127)
T 3nqr_A 79 VVVPESKRVDRMLKEFRSQRYHMAIVIDEFGGVSGLVTIEDILELIVG 126 (127)
T ss_dssp CEEETTCBHHHHHHHHHHTTCCEEEEECTTSCEEEEEEHHHHHHHC--
T ss_pred eEECCCCcHHHHHHHHHhcCCeEEEEEeCCCCEEEEEEHHHHHHHHhC
Confidence 899999999999999999999999999999999999999999998864
|
| >3k6e_A CBS domain protein; streptococcus pneumoniae TIGR4, structural genomics, PSI-2, protein structure initiative; 2.81A {Streptococcus pneumoniae} | Back alignment and structure |
|---|
Probab=99.74 E-value=2.6e-18 Score=150.63 Aligned_cols=123 Identities=19% Similarity=0.286 Sum_probs=96.3
Q ss_pred CCC--cCeEEEeCCCcHHHHHHHHHhcCCCCCEEEEEcCCCcEEEeeccCcccCcchhHHHHHhhcChhhhhhhhccCCC
Q 016003 194 IIS--TDVVAVDYHSPASLALEAISRSLFDQTSVAVVDSDGFLIGEISPSTLGCCDETVAAAITTLSAGDLMAYIDCGGP 271 (397)
Q Consensus 194 ~~~--~~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~is~~dl~~~~~~~~~~~~~ls~~Dl~~~~~~~~~ 271 (397)
+|+ .+++++.+++++.+|+++|.++++ +++||+|++|+++|+ +|.+|++.++..
T Consensus 20 iM~P~~~v~~v~~~~t~~~a~~~m~~~~~--s~~pVvd~~~~lvGi-------------------it~~Di~~~~~~--- 75 (156)
T 3k6e_A 20 FLTPAKNLAVLIDTHNADHATLLLSQMTY--TRVPVVTDEKQFVGT-------------------IGLRDIMAYQME--- 75 (156)
T ss_dssp GEEETTSSCCEETTSBHHHHHHHHTTSSS--SEEEEECC-CBEEEE-------------------EEHHHHHHHHHH---
T ss_pred hCcchhHeEEECCcCCHHHHHHHHHHcCC--cEEEEEcCCCcEEEE-------------------EEecchhhhhhh---
Confidence 676 579999999999999999999999 999999999999999 556776653210
Q ss_pred CchhHHHHHHHhhhcchhhhhhhhccccCCCCCCCCCCCCCccchhhhccccCCCccccccchhhhhcCCccEEeCCCCc
Q 016003 272 PEDLVRVVKERLKDKGLEGMLEHFDMSSSLMPYLSTSSSSDEESTATSKLTRSGKHSRSMSYSARMVRRAEAIVCHPTSS 351 (397)
Q Consensus 272 ~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~~~~s 351 (397)
..... +.. . ..+...+|.+++++|+++++
T Consensus 76 --------------~~~~~--------------------------~~~---~--------~~~v~~im~~~~~~v~~~~~ 104 (156)
T 3k6e_A 76 --------------HDLSQ--------------------------EIM---A--------DTDIVHMTKTDVAVVSPDFT 104 (156)
T ss_dssp --------------HTCCH--------------------------HHH---T--------TSBGGGTCBCSCCCBCTTCC
T ss_pred --------------ccccc--------------------------ccc---c--------ccCHHHhhcCCceecccccH
Confidence 00000 000 0 01123468899999999999
Q ss_pred HHHHHHHHHHcCCcEEEEEcCCCcEEEEEehHHHHHHHHHHH
Q 016003 352 LMAVMIQAIAHRVTYVWVIEDDCTLTGIVTFSDLLKVFRKHL 393 (397)
Q Consensus 352 l~~v~~~m~~~~i~rl~VVd~~~~lvGvVt~~DIl~~l~~~~ 393 (397)
+.+++++|.++++ +||||++|+++||||++||++++.+.+
T Consensus 105 l~~~~~~m~~~~~--lpVVd~~g~l~GiiT~~Dil~~~~~~~ 144 (156)
T 3k6e_A 105 ITEVLHKLVDESF--LPVVDAEGIFQGIITRKSILKAVNALL 144 (156)
T ss_dssp HHHHHHHTTTSSE--EEEECTTSBEEEEEEHHHHHHHHHHHS
T ss_pred HHHHHHHHHHcCC--eEEEecCCEEEEEEEHHHHHHHHHHHh
Confidence 9999999998764 999999999999999999999997654
|
| >3hf7_A Uncharacterized CBS-domain protein; CSB-domain PAIR, AMP, PSI, MCSG, STR genomics, midwest center for structural genomics; HET: AMP; 2.75A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.74 E-value=7.4e-18 Score=142.52 Aligned_cols=120 Identities=12% Similarity=0.147 Sum_probs=96.0
Q ss_pred CCC--cCeEEEeCCCcHHHHHHHHHhcCCCCCEEEEEcC-CCcEEEeeccCcccCcchhHHHHHhhcChhhhhhhhccCC
Q 016003 194 IIS--TDVVAVDYHSPASLALEAISRSLFDQTSVAVVDS-DGFLIGEISPSTLGCCDETVAAAITTLSAGDLMAYIDCGG 270 (397)
Q Consensus 194 ~~~--~~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~-~g~lvG~is~~dl~~~~~~~~~~~~~ls~~Dl~~~~~~~~ 270 (397)
+|+ ++++++.+++++.+|+++|.++++ +++||+++ +|+++|+ ++.+|++.....+.
T Consensus 7 iM~~~~~~~~v~~~~~v~~a~~~m~~~~~--~~~pVv~~~~~~lvGi-------------------vt~~dl~~~~~~~~ 65 (130)
T 3hf7_A 7 IMVPRNEIVGIDINDDWKSIVRQLTHSPH--GRIVLYRDSLDDAISM-------------------LRVREAYRLMTEKK 65 (130)
T ss_dssp HSEEGGGCCEEETTSCHHHHHHHHHTCSS--SEEEEESSSGGGEEEE-------------------EEHHHHHHHHTSSS
T ss_pred hCccHHHEEEEcCCCCHHHHHHHHHHCCC--CeEEEEcCCCCcEEEE-------------------EEHHHHHHHHhccC
Confidence 686 479999999999999999999999 99999976 5899999 55777765321100
Q ss_pred CCchhHHHHHHHhhhcchhhhhhhhccccCCCCCCCCCCCCCccchhhhccccCCCccccccchhhhhcCCccEEeCCCC
Q 016003 271 PPEDLVRVVKERLKDKGLEGMLEHFDMSSSLMPYLSTSSSSDEESTATSKLTRSGKHSRSMSYSARMVRRAEAIVCHPTS 350 (397)
Q Consensus 271 ~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~~~~ 350 (397)
. + . ......+| .+++++++++
T Consensus 66 ~------------------------------~--------------~--------------~~~v~~~m-~~~~~v~~~~ 86 (130)
T 3hf7_A 66 E------------------------------F--------------T--------------KEIMLRAA-DEIYFVPEGT 86 (130)
T ss_dssp C------------------------------C--------------C--------------HHHHHHHS-BCCCEEETTC
T ss_pred c------------------------------c--------------c--------------hhhHHHhc-cCCeEeCCCC
Confidence 0 0 0 00112345 6789999999
Q ss_pred cHHHHHHHHHHcCCcEEEEEcCCCcEEEEEehHHHHHHHHHHH
Q 016003 351 SLMAVMIQAIAHRVTYVWVIEDDCTLTGIVTFSDLLKVFRKHL 393 (397)
Q Consensus 351 sl~~v~~~m~~~~i~rl~VVd~~~~lvGvVt~~DIl~~l~~~~ 393 (397)
++.+++++|.+++++++||+|++|+++||||+.||++++..++
T Consensus 87 ~l~~~~~~m~~~~~~~~~Vvd~~g~lvGiit~~Dil~~l~g~i 129 (130)
T 3hf7_A 87 PLSTQLVKFQRNKKKVGLVVDEYGDIQGLVTVEDILEEIVGDF 129 (130)
T ss_dssp BHHHHHHHHHHHCCCEEEEECTTSCEEEEEEHHHHHHHHHC--
T ss_pred cHHHHHHHHHhcCCeEEEEEcCCCCEEEEeeHHHHHHHHhCCC
Confidence 9999999999999999999999999999999999999998765
|
| >3kpb_A Uncharacterized protein MJ0100; CBS domain, S-adenosylmethionine, conformational change, unknown function; HET: SAM; 1.60A {Methanocaldococcus jannaschii} SCOP: d.37.1.0 PDB: 3kpd_A* 3kpc_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=1e-17 Score=138.84 Aligned_cols=115 Identities=19% Similarity=0.262 Sum_probs=97.7
Q ss_pred CCCcCeEEEeCCCcHHHHHHHHHhcCCCCCEEEEEcCCCcEEEeeccCcccCcchhHHHHHhhcChhhhhhhhccCCCCc
Q 016003 194 IISTDVVAVDYHSPASLALEAISRSLFDQTSVAVVDSDGFLIGEISPSTLGCCDETVAAAITTLSAGDLMAYIDCGGPPE 273 (397)
Q Consensus 194 ~~~~~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~is~~dl~~~~~~~~~~~~~ls~~Dl~~~~~~~~~~~ 273 (397)
+|+++++++.+++++.+|++.|.++++ +.+||+|++|+++|+ ++.+|++..+...
T Consensus 6 im~~~~~~v~~~~~~~~a~~~~~~~~~--~~~~Vvd~~~~~~G~-------------------vt~~dl~~~~~~~---- 60 (122)
T 3kpb_A 6 ILSKPPITAHSNISIMEAAKILIKHNI--NHLPIVDEHGKLVGI-------------------ITSWDIAKALAQN---- 60 (122)
T ss_dssp HCCSCCCCEETTSBHHHHHHHHHHHTC--SCEEEECTTSBEEEE-------------------ECHHHHHHHHHTT----
T ss_pred hhCCCCEEeCCCCcHHHHHHHHHHcCC--CeEEEECCCCCEEEE-------------------EEHHHHHHHHHhc----
Confidence 688999999999999999999999999 999999999999999 5677776532100
Q ss_pred hhHHHHHHHhhhcchhhhhhhhccccCCCCCCCCCCCCCccchhhhccccCCCccccccchhhhhcCCccEEeCCCCcHH
Q 016003 274 DLVRVVKERLKDKGLEGMLEHFDMSSSLMPYLSTSSSSDEESTATSKLTRSGKHSRSMSYSARMVRRAEAIVCHPTSSLM 353 (397)
Q Consensus 274 ~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~~~~sl~ 353 (397)
. . +...+|..++++|++++++.
T Consensus 61 ----------------------------~----------------------~--------~v~~~~~~~~~~v~~~~~l~ 82 (122)
T 3kpb_A 61 ----------------------------K----------------------K--------TIEEIMTRNVITAHEDEPVD 82 (122)
T ss_dssp ----------------------------C----------------------C--------BGGGTSBSSCCCEETTSBHH
T ss_pred ----------------------------c----------------------c--------CHHHHhcCCCeEECCCCCHH
Confidence 0 0 01124677899999999999
Q ss_pred HHHHHHHHcCCcEEEEEcCCCcEEEEEehHHHHHHHHH
Q 016003 354 AVMIQAIAHRVTYVWVIEDDCTLTGIVTFSDLLKVFRK 391 (397)
Q Consensus 354 ~v~~~m~~~~i~rl~VVd~~~~lvGvVt~~DIl~~l~~ 391 (397)
+++++|.+++++++||+|++|+++|+||..||++++.+
T Consensus 83 ~~~~~~~~~~~~~l~Vvd~~g~~~Givt~~dl~~~l~~ 120 (122)
T 3kpb_A 83 HVAIKMSKYNISGVPVVDDYRRVVGIVTSEDISRLFGG 120 (122)
T ss_dssp HHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHHHHHC-
T ss_pred HHHHHHHHhCCCeEEEECCCCCEEEEEeHHHHHHHhhc
Confidence 99999999999999999999999999999999999865
|
| >2ef7_A Hypothetical protein ST2348; CBS-domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.10A {Sulfolobus tokodaii} SCOP: d.37.1.1 | Back alignment and structure |
|---|
Probab=99.74 E-value=2.7e-17 Score=138.53 Aligned_cols=128 Identities=20% Similarity=0.261 Sum_probs=102.3
Q ss_pred cCCccccCCCCcCeEEEeCCCcHHHHHHHHHhcCCCCCEEEEEcCCCcEEEeeccCcccCcchhHHHHHhhcChhhhhhh
Q 016003 186 ALSIDSLGIISTDVVAVDYHSPASLALEAISRSLFDQTSVAVVDSDGFLIGEISPSTLGCCDETVAAAITTLSAGDLMAY 265 (397)
Q Consensus 186 ~~ti~~L~~~~~~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~is~~dl~~~~~~~~~~~~~ls~~Dl~~~ 265 (397)
..++++ +|+++++++.+++++.+|++.|.++++ +++||+| +|+++|+ ++.+|++.+
T Consensus 3 ~~~v~~--im~~~~~~v~~~~~~~~a~~~~~~~~~--~~~~Vvd-~~~~~Gi-------------------vt~~dl~~~ 58 (133)
T 2ef7_A 3 EEIVKE--YMKTQVISVTKDAKLNDIAKVMTEKNI--GSVIVVD-GNKPVGI-------------------ITERDIVKA 58 (133)
T ss_dssp CCBGGG--TSBCSCCEEETTCBHHHHHHHHHHHTC--SEEEEEE-TTEEEEE-------------------EEHHHHHHH
T ss_pred cccHHH--hccCCCEEECCCCcHHHHHHHHHhcCC--CEEEEEE-CCEEEEE-------------------EcHHHHHHH
Confidence 345655 798999999999999999999999999 9999999 8999999 556776653
Q ss_pred hccCCCCchhHHHHHHHhhhcchhhhhhhhccccCCCCCCCCCCCCCccchhhhccccCCCccccccchhhhhcCCccEE
Q 016003 266 IDCGGPPEDLVRVVKERLKDKGLEGMLEHFDMSSSLMPYLSTSSSSDEESTATSKLTRSGKHSRSMSYSARMVRRAEAIV 345 (397)
Q Consensus 266 ~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it 345 (397)
+... +. .. .+...+|..++++
T Consensus 59 ~~~~--------------------------------~~-------------------~~--------~~v~~~~~~~~~~ 79 (133)
T 2ef7_A 59 IGKG--------------------------------KS-------------------LE--------TKAEEFMTASLIT 79 (133)
T ss_dssp HHTT--------------------------------CC-------------------TT--------CBGGGTSEECCCC
T ss_pred HhcC--------------------------------CC-------------------cc--------cCHHHHcCCCCEE
Confidence 2100 00 00 0012346678999
Q ss_pred eCCCCcHHHHHHHHHHcCCcEEEEEcCCCcEEEEEehHHHHHHHHHHHhhh
Q 016003 346 CHPTSSLMAVMIQAIAHRVTYVWVIEDDCTLTGIVTFSDLLKVFRKHLETM 396 (397)
Q Consensus 346 ~~~~~sl~~v~~~m~~~~i~rl~VVd~~~~lvGvVt~~DIl~~l~~~~~~~ 396 (397)
|++++++.+++.+|.+++++++||+|++|+++|+||+.||++++.++++.+
T Consensus 80 v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~~Giit~~dll~~~~~~~~~l 130 (133)
T 2ef7_A 80 IREDSPITGALALMRQFNIRHLPVVDDKGNLKGIISIRDITRAIDDMFETM 130 (133)
T ss_dssp EETTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHHHHC---
T ss_pred ECCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEEHHHHHHHHHHHHHHh
Confidence 999999999999999999999999998899999999999999998876643
|
| >3lfr_A Putative metal ION transporter; CBS, AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 1.53A {Pseudomonas syringae} | Back alignment and structure |
|---|
Probab=99.74 E-value=9.5e-18 Score=142.83 Aligned_cols=124 Identities=19% Similarity=0.271 Sum_probs=95.8
Q ss_pred CCccccCCCC--cCeEEEeCCCcHHHHHHHHHhcCCCCCEEEEEcCC-CcEEEeeccCcccCcchhHHHHHhhcChhhhh
Q 016003 187 LSIDSLGIIS--TDVVAVDYHSPASLALEAISRSLFDQTSVAVVDSD-GFLIGEISPSTLGCCDETVAAAITTLSAGDLM 263 (397)
Q Consensus 187 ~ti~~L~~~~--~~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~-g~lvG~is~~dl~~~~~~~~~~~~~ls~~Dl~ 263 (397)
.++++ +|+ ++++++.+++++.+|+++|.++++ +++||+|++ |+++|+|| .+|++
T Consensus 3 ~~v~~--iM~~~~~~~~v~~~~~v~~a~~~m~~~~~--~~~pVvd~~~~~~vGivt-------------------~~dl~ 59 (136)
T 3lfr_A 3 LQVRD--IMVPRSQMISIKATQTPREFLPAVIDAAH--SRYPVIGESHDDVLGVLL-------------------AKDLL 59 (136)
T ss_dssp CBHHH--HSEEGGGCCCEETTCCHHHHHHHHHHHCC--SEEEEESSSTTCEEEEEE-------------------GGGGG
T ss_pred CChHh--ccccHHHEEEEcCCCCHHHHHHHHHhCCC--CEEEEEcCCCCcEEEEEE-------------------HHHHH
Confidence 34555 688 679999999999999999999999 999999988 89999965 55554
Q ss_pred hhhccCCCCchhHHHHHHHhhhcchhhhhhhhccccCCCCCCCCCCCCCccchhhhccccCCCccccccchhhhhcCCcc
Q 016003 264 AYIDCGGPPEDLVRVVKERLKDKGLEGMLEHFDMSSSLMPYLSTSSSSDEESTATSKLTRSGKHSRSMSYSARMVRRAEA 343 (397)
Q Consensus 264 ~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (397)
..+... . . . ... ...+|. ++
T Consensus 60 ~~~~~~-----------------~-~------~---------------------------~~~--------v~~~m~-~~ 79 (136)
T 3lfr_A 60 PLILKA-----------------D-G------D---------------------------SDD--------VKKLLR-PA 79 (136)
T ss_dssp GGGGSS-----------------S-G------G---------------------------GCC--------GGGTCB-CC
T ss_pred HHHHhc-----------------c-C------C---------------------------CcC--------HHHHcC-CC
Confidence 422100 0 0 0 000 112354 48
Q ss_pred EEeCCCCcHHHHHHHHHHcCCcEEEEEcCCCcEEEEEehHHHHHHHHHHH
Q 016003 344 IVCHPTSSLMAVMIQAIAHRVTYVWVIEDDCTLTGIVTFSDLLKVFRKHL 393 (397)
Q Consensus 344 it~~~~~sl~~v~~~m~~~~i~rl~VVd~~~~lvGvVt~~DIl~~l~~~~ 393 (397)
+++.+++++.+++.+|.+++++++||+|++|+++||||+.||++++..++
T Consensus 80 ~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~g~lvGiit~~Dil~~l~~~~ 129 (136)
T 3lfr_A 80 TFVPESKRLNVLLREFRANHNHMAIVIDEYGGVAGLVTIEDVLEQIVGDI 129 (136)
T ss_dssp CEEETTCBHHHHHHHHHHHTCCEEEEECTTSCEEEEEEHHHHHTTC----
T ss_pred eEECCCCcHHHHHHHHHhcCCeEEEEEeCCCCEEEEEEHHHHHHHHhCCC
Confidence 99999999999999999999999999999999999999999999988754
|
| >4gqw_A CBS domain-containing protein CBSX1, chloroplasti; thioredoxin, plant, protein binding; 2.20A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.73 E-value=1.1e-17 Score=143.41 Aligned_cols=140 Identities=15% Similarity=0.186 Sum_probs=101.3
Q ss_pred CCccccCCCCc--CeEEEeCCCcHHHHHHHHHhcCCCCCEEEEEcCCCcEEEeeccCcccCcchhHHHHHhhcChhhhhh
Q 016003 187 LSIDSLGIIST--DVVAVDYHSPASLALEAISRSLFDQTSVAVVDSDGFLIGEISPSTLGCCDETVAAAITTLSAGDLMA 264 (397)
Q Consensus 187 ~ti~~L~~~~~--~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~is~~dl~~~~~~~~~~~~~ls~~Dl~~ 264 (397)
.++++ +|++ +++++.+++++.+|++.|.++++ +++||+|++|+++|+||..||.+
T Consensus 5 ~~v~~--im~~~~~~~~v~~~~~~~~a~~~~~~~~~--~~~~Vvd~~~~~~G~vt~~dl~~------------------- 61 (152)
T 4gqw_A 5 YTVGE--FMTKKEDLHVVKPTTTVDEALELLVENRI--TGFPVIDEDWKLVGLVSDYDLLA------------------- 61 (152)
T ss_dssp SBGGG--TSEESTTCCCBCTTSBHHHHHHHHHHTTC--SEEEEECTTCBEEEEEEHHHHTT-------------------
T ss_pred EEhhh--ccCCCCCCeEECCCCcHHHHHHHHHHcCC--ceEEEEeCCCeEEEEEEHHHHHH-------------------
Confidence 45555 7887 89999999999999999999999 99999999999999966544444
Q ss_pred hhccCCCCchhHHHHHHHhhhcchhhhhhhhccccCCCCCCCCCCCCCccchhhhccccCCCccccccchhhhhcCCccE
Q 016003 265 YIDCGGPPEDLVRVVKERLKDKGLEGMLEHFDMSSSLMPYLSTSSSSDEESTATSKLTRSGKHSRSMSYSARMVRRAEAI 344 (397)
Q Consensus 265 ~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 344 (397)
+.........+ ..+...+. .....+...+|..+++
T Consensus 62 ~~~~~~~~~~~-------------~~~~~~~~--------------------------------~~~~~~v~~~m~~~~~ 96 (152)
T 4gqw_A 62 LDSGDSTWKTF-------------NAVQKLLS--------------------------------KTNGKLVGDLMTPAPL 96 (152)
T ss_dssp CC----CCHHH-------------HHHHTC-------------------------------------CCBHHHHSEESCC
T ss_pred hhcccCcccch-------------HHHHHHHH--------------------------------HhccccHHHhcCCCce
Confidence 21100000000 00000000 0001112346778899
Q ss_pred EeCCCCcHHHHHHHHHHcCCcEEEEEcCCCcEEEEEehHHHHHHHHHHHh
Q 016003 345 VCHPTSSLMAVMIQAIAHRVTYVWVIEDDCTLTGIVTFSDLLKVFRKHLE 394 (397)
Q Consensus 345 t~~~~~sl~~v~~~m~~~~i~rl~VVd~~~~lvGvVt~~DIl~~l~~~~~ 394 (397)
+|++++++.+++.+|.+++++++||+|++|+++|+||.+||++++.+..+
T Consensus 97 ~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~g~~~Giit~~dil~~~~~~~~ 146 (152)
T 4gqw_A 97 VVEEKTNLEDAAKILLETKYRRLPVVDSDGKLVGIITRGNVVRAALQIKR 146 (152)
T ss_dssp CEESSSBHHHHHHHHHHSSCCEEEEECTTSBEEEEEEHHHHHHHHHC---
T ss_pred EECCCCcHHHHHHHHHHCCCCEEEEECCCCcEEEEEEHHHHHHHHHhccc
Confidence 99999999999999999999999999988999999999999999987543
|
| >2nyc_A Nuclear protein SNF4; bateman2 domain, AMP kinase, protein binding; 1.90A {Saccharomyces cerevisiae} SCOP: d.37.1.1 PDB: 2nye_A | Back alignment and structure |
|---|
Probab=99.73 E-value=2e-17 Score=140.74 Aligned_cols=130 Identities=23% Similarity=0.351 Sum_probs=100.6
Q ss_pred ccCCccccC-CCCcCeEEEeCCCcHHHHHHHHHhcCCCCCEEEEEcCCCcEEEeeccCcccCcchhHHHHHhhcChhhhh
Q 016003 185 PALSIDSLG-IISTDVVAVDYHSPASLALEAISRSLFDQTSVAVVDSDGFLIGEISPSTLGCCDETVAAAITTLSAGDLM 263 (397)
Q Consensus 185 ~~~ti~~L~-~~~~~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~is~~dl~~~~~~~~~~~~~ls~~Dl~ 263 (397)
..++++++. +|.++++++.+++++.+|++.|.++++ +++||+|++|+++|+| +.+|++
T Consensus 6 ~~~~v~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~--~~~~Vvd~~~~~~Giv-------------------t~~dl~ 64 (144)
T 2nyc_A 6 LKIPIGDLNIITQDNMKSCQMTTPVIDVIQMLTQGRV--SSVPIIDENGYLINVY-------------------EAYDVL 64 (144)
T ss_dssp GGSBGGGSSCCBCSSCCCBCTTSBHHHHHHHHHHHTC--SEEEEECTTCBEEEEE-------------------EHHHHH
T ss_pred hhcchhhcCCCCCCCceEECCCCcHHHHHHHHHHcCc--ceeeEEcCCCcEEEEE-------------------cHHHHH
Confidence 466777766 577899999999999999999999999 9999999999999995 566665
Q ss_pred hhhccCCCCchhHHHHHHHhhhcchhhhhhhhccccCCCCCCCCCCCCCccchhhhccccCCCccccccchhhhhcCC--
Q 016003 264 AYIDCGGPPEDLVRVVKERLKDKGLEGMLEHFDMSSSLMPYLSTSSSSDEESTATSKLTRSGKHSRSMSYSARMVRRA-- 341 (397)
Q Consensus 264 ~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 341 (397)
.++..+ .. . . .. .+...+|..
T Consensus 65 ~~~~~~-----------------~~-------~-----~--------------------~~--------~~v~~~m~~~~ 87 (144)
T 2nyc_A 65 GLIKGG-----------------IY-------N-----D--------------------LS--------LSVGEALMRRS 87 (144)
T ss_dssp HHHHTC-----------------------------------------------------CC--------SBHHHHHHHCC
T ss_pred HHhccc-----------------cc-------c-----c--------------------CC--------ccHHHHHhcCc
Confidence 532100 00 0 0 00 001112322
Q ss_pred ----ccEEeCCCCcHHHHHHHHHHcCCcEEEEEcCCCcEEEEEehHHHHHHHHHH
Q 016003 342 ----EAIVCHPTSSLMAVMIQAIAHRVTYVWVIEDDCTLTGIVTFSDLLKVFRKH 392 (397)
Q Consensus 342 ----~~it~~~~~sl~~v~~~m~~~~i~rl~VVd~~~~lvGvVt~~DIl~~l~~~ 392 (397)
++++|++++++.+++++|.+++++++||+|++|+++|+||..||++++.++
T Consensus 88 ~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~g~~~Giit~~dil~~l~~~ 142 (144)
T 2nyc_A 88 DDFEGVYTCTKNDKLSTIMDNIRKARVHRFFVVDDVGRLVGVLTLSDILKYILLG 142 (144)
T ss_dssp ------CEECTTSBHHHHHHHHHHHTCSEEEEECTTSBEEEEEEHHHHHHHHHHC
T ss_pred cccCCCeEECCCCcHHHHHHHHHHCCCCEEEEECCCCCEEEEEEHHHHHHHHHhc
Confidence 689999999999999999999999999999889999999999999999764
|
| >4esy_A CBS domain containing membrane protein; structural genomics, PSI-biology; 2.01A {Sphaerobacter thermophilus} | Back alignment and structure |
|---|
Probab=99.72 E-value=7.6e-18 Score=148.87 Aligned_cols=132 Identities=16% Similarity=0.151 Sum_probs=108.6
Q ss_pred ccccchhhhhhcCCCCeEEEeCChhHHHHHHHHhhCCCceEEEEccCCCCCCCCCCCCCCCeEEEEEehhHHHHHHhhc-
Q 016003 4 SLLADEVSDLCLGKPALRALSISAAIADALSALKNSDESFISVWDCNCCSNHRKLGDACECQCVGKVCMVDVICYLCKD- 82 (397)
Q Consensus 4 ~~~~~~v~dl~~~k~~li~v~~~~tv~~Al~~L~~~~I~s~PV~d~~~~~~~~~~~~~~~~~~vGiv~~~Dil~~l~~~- 82 (397)
.|.+.+|+|+| +++++++++++|+.+|+++|.+++++++||+|.+ |+++|+||..||++.+...
T Consensus 14 ~l~~~~V~diM--~~~v~~v~~~~tl~~a~~~m~~~~~~~~pVvd~~-------------g~lvGiit~~Dll~~~~~~~ 78 (170)
T 4esy_A 14 AIRQVPIRDIL--TSPVVTVREDDTLDAVAKTMLEHQIGCAPVVDQN-------------GHLVGIITESDFLRGSIPFW 78 (170)
T ss_dssp HHHTSBGGGGC--CSCCCCEETTSBHHHHHHHHHHTTCSEEEEECTT-------------SCEEEEEEGGGGGGGTCCTT
T ss_pred HHcCCCHHHhc--CCCCcEECCcCcHHHHHHHHHHcCCeEEEEEcCC-------------ccEEEEEEHHHHHHHHhhcc
Confidence 46678999999 5689999999999999999999999999999963 6899999999998765421
Q ss_pred ---------CCCCC------hhhhhcCChhhhccCCCCCceEEeCCCCCHHHHHHHHh-cCCceEEEeccCcchhhhhhh
Q 016003 83 ---------SNSLS------PSLALKQPVSVLLPQLLPPLVMHVEPSCSLLEAMDLML-GGAQNLVVPIKNRLSIKRKQQ 146 (397)
Q Consensus 83 ---------~~l~~------~~~~~~~~V~~lm~~~~~~~~~~V~~~~sL~~al~~m~-~g~~r~~V~~~~~~~~~~~~~ 146 (397)
..... .....+.+++++|... ++++.++++|.+|+++|. +++++++|+++
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~----~~tv~~~~~l~~a~~~m~~~~~~~lpVvd~---------- 144 (170)
T 4esy_A 79 IYEASEILSRAIPAPEVEHLFETGRKLTASAVMTQP----VVTAAPEDSVGSIADQMRRHGIHRIPVVQD---------- 144 (170)
T ss_dssp HHHHHHHHTTTSCHHHHHHHHHHHTTCBHHHHCBCC----SCCBCTTSBHHHHHHHHHHTTCSEEEEEET----------
T ss_pred ccchhhhhhhccchhhHHhhhccccccchhhhcccC----cccCCcchhHHHHHHHHHHcCCcEEEEEEC----------
Confidence 00000 0122357899999765 899999999999999999 89999999852
Q ss_pred cccccccccCCCCceeeeecHHHHHHHHHh
Q 016003 147 QKLSSSSLTNHNGREFCWLTQEDIIRFILS 176 (397)
Q Consensus 147 ~~~~~~~~~~~~~~~~~IITq~DIi~~l~~ 176 (397)
|+++||||++||++++..
T Consensus 145 ------------g~lvGivt~~Dil~~l~~ 162 (170)
T 4esy_A 145 ------------GVPVGIVTRRDLLKLLLL 162 (170)
T ss_dssp ------------TEEEEEEEHHHHTTTSCC
T ss_pred ------------CEEEEEEEHHHHHHHHHh
Confidence 357899999999999754
|
| >3gby_A Uncharacterized protein CT1051; CBS domain, structural genomics, PSI-2, protein structure initiative; HET: EPE; 1.66A {Chlorobium tepidum tls} | Back alignment and structure |
|---|
Probab=99.72 E-value=2.2e-17 Score=138.66 Aligned_cols=124 Identities=15% Similarity=0.151 Sum_probs=100.9
Q ss_pred cCCccccCCCCcCeEEEeCCCcHHHHHHHHHhcCCCCCEEEEEcCCCcEEEeeccCcccCcchhHHHHHhhcChhhhhhh
Q 016003 186 ALSIDSLGIISTDVVAVDYHSPASLALEAISRSLFDQTSVAVVDSDGFLIGEISPSTLGCCDETVAAAITTLSAGDLMAY 265 (397)
Q Consensus 186 ~~ti~~L~~~~~~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~is~~dl~~~~~~~~~~~~~ls~~Dl~~~ 265 (397)
..++++ +|++++.++.+++++.+|++.|.++++ +.+||+|+ |+++|+| +.+|++..
T Consensus 4 s~~v~~--~m~~~~~~v~~~~~~~~a~~~~~~~~~--~~~~Vvd~-~~~~Giv-------------------t~~dl~~~ 59 (128)
T 3gby_A 4 SVTFSY--LAETDYPVFTLGGSTADAARRLAASGC--ACAPVLDG-ERYLGMV-------------------HLSRLLEG 59 (128)
T ss_dssp TCBGGG--GCBCCSCCEETTSBHHHHHHHHHHHTC--SEEEEEET-TEEEEEE-------------------EHHHHHTT
T ss_pred ceEHHH--hhcCCcceECCCCCHHHHHHHHHHCCC--cEEEEEEC-CEEEEEE-------------------EHHHHHHH
Confidence 345555 799999999999999999999999999 99999999 9999994 56666652
Q ss_pred hccCCCCchhHHHHHHHhhhcchhhhhhhhccccCCCCCCCCCCCCCccchhhhccccCCCccccccchhhhhcCCccEE
Q 016003 266 IDCGGPPEDLVRVVKERLKDKGLEGMLEHFDMSSSLMPYLSTSSSSDEESTATSKLTRSGKHSRSMSYSARMVRRAEAIV 345 (397)
Q Consensus 266 ~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it 345 (397)
...+ .. . ... ..++|..++++
T Consensus 60 ~~~~--------------------------------~~-------------~------~~~--------v~~~m~~~~~~ 80 (128)
T 3gby_A 60 RKGW--------------------------------PT-------------V------KEK--------LGEELLETVRS 80 (128)
T ss_dssp CSSS--------------------------------CC-------------T------TCB--------CCGGGCBCCCC
T ss_pred HhhC--------------------------------Cc-------------c------cCc--------HHHHccCCCcE
Confidence 2100 00 0 000 11357789999
Q ss_pred eCCCCcHHHHHHHHHHcCCcEEEEEcCCCcEEEEEehHHHHHHHHHH
Q 016003 346 CHPTSSLMAVMIQAIAHRVTYVWVIEDDCTLTGIVTFSDLLKVFRKH 392 (397)
Q Consensus 346 ~~~~~sl~~v~~~m~~~~i~rl~VVd~~~~lvGvVt~~DIl~~l~~~ 392 (397)
+++++++.+++++|.+++++++||+|++|+++|+||+.||++++.+.
T Consensus 81 v~~~~~l~~~~~~~~~~~~~~lpVvd~~g~~~Giit~~dll~~l~~~ 127 (128)
T 3gby_A 81 YRPGEQLFDNLISVAAAKCSVVPLADEDGRYEGVVSRKRILGFLAER 127 (128)
T ss_dssp BCTTSBGGGSHHHHHHCSSSEEEEECTTCBEEEEEEHHHHHHHHHTT
T ss_pred ECCCCCHHHHHHHHHhCCCcEEEEECCCCCEEEEEEHHHHHHHHHhh
Confidence 99999999999999999999999999989999999999999998753
|
| >2yzi_A Hypothetical protein PH0107; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; 2.25A {Pyrococcus horikoshii} SCOP: d.37.1.1 | Back alignment and structure |
|---|
Probab=99.72 E-value=5e-17 Score=137.77 Aligned_cols=127 Identities=24% Similarity=0.358 Sum_probs=102.7
Q ss_pred cCCccccCCCCcCeEEEeCCCcHHHHHHHHHhcCCCCCEEEEEcCCCcEEEeeccCcccCcchhHHHHHhhcChhhhhh-
Q 016003 186 ALSIDSLGIISTDVVAVDYHSPASLALEAISRSLFDQTSVAVVDSDGFLIGEISPSTLGCCDETVAAAITTLSAGDLMA- 264 (397)
Q Consensus 186 ~~ti~~L~~~~~~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~is~~dl~~~~~~~~~~~~~ls~~Dl~~- 264 (397)
..++++ +|+++++++.+++++.+|++.|.++++ +++||+|++|+++|+ ++.+|++.
T Consensus 6 ~~~v~~--im~~~~~~v~~~~~~~~a~~~~~~~~~--~~~~Vvd~~~~~~Gi-------------------vt~~dl~~~ 62 (138)
T 2yzi_A 6 KAPIKV--YMTKKLLGVKPSTSVQEASRLMMEFDV--GSLVVINDDGNVVGF-------------------FTKSDIIRR 62 (138)
T ss_dssp TSBGGG--TCBCCCCEECTTSBHHHHHHHHHHHTC--SEEEEECTTSCEEEE-------------------EEHHHHHHH
T ss_pred hhhHHH--HhcCCCeEECCCCcHHHHHHHHHHcCC--CEEEEEcCCCcEEEE-------------------EeHHHHHHH
Confidence 455665 799999999999999999999999999 999999988999999 45666642
Q ss_pred hhccCCCCchhHHHHHHHhhhcchhhhhhhhccccCCCCCCCCCCCCCccchhhhccccCCCccccccchhhhhcCCccE
Q 016003 265 YIDCGGPPEDLVRVVKERLKDKGLEGMLEHFDMSSSLMPYLSTSSSSDEESTATSKLTRSGKHSRSMSYSARMVRRAEAI 344 (397)
Q Consensus 265 ~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 344 (397)
++..+ . . . ..+...+|..+++
T Consensus 63 ~~~~~------------------~-------------~--------------------~--------~~~v~~~m~~~~~ 83 (138)
T 2yzi_A 63 VIVPG------------------L-------------P--------------------Y--------DIPVERIMTRNLI 83 (138)
T ss_dssp TTTTC------------------C-------------C--------------------T--------TSBGGGTCBCSCC
T ss_pred HHhcC------------------C-------------c--------------------c--------cCCHHHHhhCCCe
Confidence 21100 0 0 0 0001235778999
Q ss_pred EeCCCCcHHHHHHHHHHcCCcEEEEEcCCCcEEEEEehHHHHHHHHHHHhh
Q 016003 345 VCHPTSSLMAVMIQAIAHRVTYVWVIEDDCTLTGIVTFSDLLKVFRKHLET 395 (397)
Q Consensus 345 t~~~~~sl~~v~~~m~~~~i~rl~VVd~~~~lvGvVt~~DIl~~l~~~~~~ 395 (397)
+|++++++.+++.+|.+++++++ |+|++|+++|+||..||++++.+.++.
T Consensus 84 ~v~~~~~l~~~~~~m~~~~~~~l-Vvd~~g~~~Giit~~dil~~~~~~~~~ 133 (138)
T 2yzi_A 84 TANVNTPLGEVLRKMAEHRIKHI-LIEEEGKIVGIFTLSDLLEASRRRLET 133 (138)
T ss_dssp EEETTSBHHHHHHHHHHHTCSEE-EEEETTEEEEEEEHHHHHHHHHCCSCC
T ss_pred EECCCCcHHHHHHHHHhcCCCEE-EECCCCCEEEEEEHHHHHHHHHHHHHh
Confidence 99999999999999999999999 999889999999999999999876543
|
| >2p9m_A Hypothetical protein MJ0922; structural genomics, collaboratory for structural genomics, secsg; 2.59A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} | Back alignment and structure |
|---|
Probab=99.71 E-value=5.9e-17 Score=137.19 Aligned_cols=125 Identities=17% Similarity=0.307 Sum_probs=101.6
Q ss_pred cCCccccCCCCcCeEEEeCCCcHHHHHHHHHhcCCCCCEEEEEcCCCcEEEeeccCcccCcchhHHHHHhhcChhhh-hh
Q 016003 186 ALSIDSLGIISTDVVAVDYHSPASLALEAISRSLFDQTSVAVVDSDGFLIGEISPSTLGCCDETVAAAITTLSAGDL-MA 264 (397)
Q Consensus 186 ~~ti~~L~~~~~~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~is~~dl~~~~~~~~~~~~~ls~~Dl-~~ 264 (397)
..++++ +|+++++++.+++++.+|++.|.++++ +++||+|++|+++|+ ++.+|+ +.
T Consensus 7 ~~~v~~--im~~~~~~v~~~~~~~~a~~~~~~~~~--~~~~Vvd~~~~~~Gi-------------------vt~~dl~~~ 63 (138)
T 2p9m_A 7 NIKVKD--VMTKNVITAKRHEGVVEAFEKMLKYKI--SSLPVIDDENKVIGI-------------------VTTTDIGYN 63 (138)
T ss_dssp TCBGGG--TSBCSCCCEETTSBHHHHHHHHHHHTC--CEEEEECTTCBEEEE-------------------EEHHHHHHH
T ss_pred cCCHHH--hhcCCceEECCCCcHHHHHHHHHHCCC--cEEEEECCCCeEEEE-------------------EEHHHHHHH
Confidence 456665 798999999999999999999999999 999999988999999 556676 54
Q ss_pred hhccCCCCchhHHHHHHHhhhcchhhhhhhhccccCCCCCCCCCCCCCccchhhhccccCCCccccccchhhhhcCCccE
Q 016003 265 YIDCGGPPEDLVRVVKERLKDKGLEGMLEHFDMSSSLMPYLSTSSSSDEESTATSKLTRSGKHSRSMSYSARMVRRAEAI 344 (397)
Q Consensus 265 ~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 344 (397)
++... .+ . ..+...+|..+++
T Consensus 64 ~~~~~-------------------------------~~--------------------~--------~~~v~~~m~~~~~ 84 (138)
T 2p9m_A 64 LIRDK-------------------------------YT--------------------L--------ETTIGDVMTKDVI 84 (138)
T ss_dssp HTTTC-------------------------------CC--------------------S--------SCBHHHHSCSSCC
T ss_pred HHhhc-------------------------------cc--------------------C--------CcCHHHHhCCCcE
Confidence 22100 00 0 0012245778999
Q ss_pred EeCCCCcHHHHHHHHHHcC-----CcEEEEEcCCCcEEEEEehHHHHHHHHHH
Q 016003 345 VCHPTSSLMAVMIQAIAHR-----VTYVWVIEDDCTLTGIVTFSDLLKVFRKH 392 (397)
Q Consensus 345 t~~~~~sl~~v~~~m~~~~-----i~rl~VVd~~~~lvGvVt~~DIl~~l~~~ 392 (397)
+|++++++.+++.+|.+++ ++++||+|++|+++|+||..||++++.++
T Consensus 85 ~v~~~~~l~~~~~~~~~~~~~~~~~~~l~Vvd~~g~~~Giit~~dll~~~~~~ 137 (138)
T 2p9m_A 85 TIHEDASILEAIKKMDISGKKEEIINQLPVVDKNNKLVGIISDGDIIRTISKI 137 (138)
T ss_dssp CEETTSBHHHHHHHHTCC-----CCCEEEEECTTSBEEEEEEHHHHHHHHHHC
T ss_pred EECCCCCHHHHHHHHHhcCCccccccEEEEECCCCeEEEEEEHHHHHHHHHhh
Confidence 9999999999999999999 99999999889999999999999998764
|
| >3lqn_A CBS domain protein; csgid, structural genomics, unknown function, center for structural genomics of infectious diseases; 1.80A {Bacillus anthracis} SCOP: d.37.1.0 | Back alignment and structure |
|---|
Probab=99.71 E-value=4.7e-17 Score=140.11 Aligned_cols=132 Identities=19% Similarity=0.238 Sum_probs=101.6
Q ss_pred cCCccccCCCC--cCeEEEeCCCcHHHHHHHHHhcCCCCCEEEEEcCCCcEEEeeccCcccCcchhHHHHHhhcChhhhh
Q 016003 186 ALSIDSLGIIS--TDVVAVDYHSPASLALEAISRSLFDQTSVAVVDSDGFLIGEISPSTLGCCDETVAAAITTLSAGDLM 263 (397)
Q Consensus 186 ~~ti~~L~~~~--~~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~is~~dl~~~~~~~~~~~~~ls~~Dl~ 263 (397)
..++++ +|+ ++++++.+++++.+|++.|.++++ +++||+|++|+++|+| |.+|++
T Consensus 14 ~~~v~~--im~~~~~~~~v~~~~~l~~a~~~~~~~~~--~~~pVvd~~~~~~Giv-------------------t~~dl~ 70 (150)
T 3lqn_A 14 QIFVKD--LMISSEKVAHVQIGNGLEHALLVLVKSGY--SAIPVLDPMYKLHGLI-------------------STAMIL 70 (150)
T ss_dssp HCBHHH--HSEEGGGSCCBCTTSBHHHHHHHHHHHTC--SEEEEECTTCBEEEEE-------------------EHHHHH
T ss_pred cCChhh--cccCCCceEEECCCCcHHHHHHHHHHcCC--cEEEEECCCCCEEEEE-------------------EHHHHH
Confidence 445655 688 569999999999999999999999 9999999999999994 566666
Q ss_pred hhhccCCCCchhHHHHHHHhhhcchhhhhhhhccccCCCCCCCCCCCCCccchhhhccccCCCccccccchhhhhcCCcc
Q 016003 264 AYIDCGGPPEDLVRVVKERLKDKGLEGMLEHFDMSSSLMPYLSTSSSSDEESTATSKLTRSGKHSRSMSYSARMVRRAEA 343 (397)
Q Consensus 264 ~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (397)
..+.... +.. . +.+ . ..+...+|..++
T Consensus 71 ~~~~~~~----------------~~~-~-------------------------~~~---~--------~~~v~~~m~~~~ 97 (150)
T 3lqn_A 71 DGILGLE----------------RIE-F-------------------------ERL---E--------EMKVEQVMKQDI 97 (150)
T ss_dssp HHTBCSS----------------SBC-G-------------------------GGG---G--------GCBGGGTCBSSC
T ss_pred HHHHhhc----------------ccc-h-------------------------hHH---h--------cCCHHHHhcCCC
Confidence 5321000 000 0 000 0 011224578899
Q ss_pred EEeCCCCcHHHHHHHHHHcCCcEEEEEcCCCcEEEEEehHHHHHHHHHHHhh
Q 016003 344 IVCHPTSSLMAVMIQAIAHRVTYVWVIEDDCTLTGIVTFSDLLKVFRKHLET 395 (397)
Q Consensus 344 it~~~~~sl~~v~~~m~~~~i~rl~VVd~~~~lvGvVt~~DIl~~l~~~~~~ 395 (397)
++|++++++.+++.+|.++++ +||||++|+++|+||..||++++.++++.
T Consensus 98 ~~v~~~~~l~~a~~~~~~~~~--l~Vvd~~g~~~Giit~~dil~~l~~~~~~ 147 (150)
T 3lqn_A 98 PVLKLEDSFAKALEMTIDHPF--ICAVNEDGYFEGILTRRAILKLLNKKVRQ 147 (150)
T ss_dssp CEEETTCBHHHHHHHHHHCSE--EEEECTTCBEEEEEEHHHHHHHHHHHC--
T ss_pred ceeCCCCCHHHHHHHHHhCCE--EEEECCCCcEEEEEEHHHHHHHHHHHhHh
Confidence 999999999999999999997 99999889999999999999999987654
|
| >3fhm_A Uncharacterized protein ATU1752; CBS domain, prokaryotic, bound nucleotide, AMP, NADH, struct genomics, PSI-2; HET: AMP NAI; 2.70A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.71 E-value=3.2e-17 Score=144.01 Aligned_cols=134 Identities=22% Similarity=0.285 Sum_probs=105.4
Q ss_pred CCCCCCccCCccccCCCCc---CeEEEeCCCcHHHHHHHHHhcCCCCCEEEEEcCCCcEEEeeccCcccCcchhHHHHHh
Q 016003 179 SLFSPIPALSIDSLGIIST---DVVAVDYHSPASLALEAISRSLFDQTSVAVVDSDGFLIGEISPSTLGCCDETVAAAIT 255 (397)
Q Consensus 179 ~~l~~l~~~ti~~L~~~~~---~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~is~~dl~~~~~~~~~~~~ 255 (397)
..+..+...++++ +|++ +++++.+++++.+|++.|.++++ +++||+|++|+++|+|
T Consensus 16 ~~~~~l~~~~v~d--im~~~~~~~~~v~~~~~l~~a~~~~~~~~~--~~~~Vvd~~~~~~Giv----------------- 74 (165)
T 3fhm_A 16 NLYFQGMATFVKD--LLDRKGRDVVTVGPDVSIGEAAGTLHAHKI--GAVVVTDADGVVLGIF----------------- 74 (165)
T ss_dssp CCCCSSSSCBHHH--HHHHHCSCCCEECTTSBHHHHHHHHHHHTC--SEEEEECTTSCEEEEE-----------------
T ss_pred hhhHhhhhcCHHH--HhccCCCCCeEECCCCCHHHHHHHHHHcCC--CEEEEEcCCCeEEEEE-----------------
Confidence 3455566677776 6874 79999999999999999999999 9999999999999994
Q ss_pred hcChhhhhhhhccCCCCchhHHHHHHHhhhcchhhhhhhhccccCCCCCCCCCCCCCccchhhhccccCCCccccccchh
Q 016003 256 TLSAGDLMAYIDCGGPPEDLVRVVKERLKDKGLEGMLEHFDMSSSLMPYLSTSSSSDEESTATSKLTRSGKHSRSMSYSA 335 (397)
Q Consensus 256 ~ls~~Dl~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (397)
+.+|++..+.. . ... . .. .+.
T Consensus 75 --t~~dl~~~~~~-------------~----~~~------~--------------------------~~--------~~v 95 (165)
T 3fhm_A 75 --TERDLVKAVAG-------------Q----GAA------S--------------------------LQ--------QSV 95 (165)
T ss_dssp --EHHHHHHHHHH-------------H----GGG------G--------------------------GT--------SBG
T ss_pred --EHHHHHHHHHh-------------c----CCc------c--------------------------cc--------CCH
Confidence 56666652210 0 000 0 00 001
Q ss_pred hhhcCCccEEeCCCCcHHHHHHHHHHcCCcEEEEEcCCCcEEEEEehHHHHHHHHHHH
Q 016003 336 RMVRRAEAIVCHPTSSLMAVMIQAIAHRVTYVWVIEDDCTLTGIVTFSDLLKVFRKHL 393 (397)
Q Consensus 336 ~~~~~~~~it~~~~~sl~~v~~~m~~~~i~rl~VVd~~~~lvGvVt~~DIl~~l~~~~ 393 (397)
..+|..++++|++++++.+++.+|.+++++++||+|+ |+++|+||..||++++.++.
T Consensus 96 ~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~-g~~~Giit~~dil~~~~~~~ 152 (165)
T 3fhm_A 96 SVAMTKNVVRCQHNSTTDQLMEIMTGGRFRHVPVEEN-GRLAGIISIGDVVKARIGEI 152 (165)
T ss_dssp GGTSBSSCCCBCTTCBHHHHHHHHHHHTCSEEEEEET-TEEEEEEEHHHHHHHTTCC-
T ss_pred HHHhcCCCeEECCCCcHHHHHHHHHHcCCCEEEEEEC-CEEEEEEEHHHHHHHHHHHH
Confidence 2357789999999999999999999999999999999 99999999999999986643
|
| >2rih_A Conserved protein with 2 CBS domains; bateman domain, AMP binding protein, ligand-BIND protein; 2.10A {Pyrobaculum aerophilum} SCOP: d.37.1.1 PDB: 2rif_A | Back alignment and structure |
|---|
Probab=99.71 E-value=1.1e-16 Score=136.48 Aligned_cols=122 Identities=12% Similarity=0.141 Sum_probs=99.5
Q ss_pred CCccccCCCCcCeEEEeCCCcHHHHHHHHHhcCCCCCEEEEEcCCC--cEEEeeccCcccCcchhHHHHHhhcChhhhhh
Q 016003 187 LSIDSLGIISTDVVAVDYHSPASLALEAISRSLFDQTSVAVVDSDG--FLIGEISPSTLGCCDETVAAAITTLSAGDLMA 264 (397)
Q Consensus 187 ~ti~~L~~~~~~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g--~lvG~is~~dl~~~~~~~~~~~~~ls~~Dl~~ 264 (397)
.++++ +|+++++++.+++++.+|++.|.++++ +++||+|++| +++|+ ++.+|++.
T Consensus 5 ~~v~~--im~~~~~~v~~~~~~~~a~~~~~~~~~--~~~~Vvd~~~~~~~~Gi-------------------vt~~dl~~ 61 (141)
T 2rih_A 5 IRTSE--LLKRPPVSLPETATIREVATELAKNRV--GLAVLTARDNPKRPVAV-------------------VSERDILR 61 (141)
T ss_dssp CBGGG--GCCSCCEEEETTCBHHHHHHHHHHHTC--SEEEEEETTEEEEEEEE-------------------EEHHHHHH
T ss_pred eEHHH--HhcCCCeEeCCCCcHHHHHHHHHHcCC--CEEEEEcCCCcceeEEE-------------------EEHHHHHH
Confidence 45555 789999999999999999999999999 9999999988 99999 45667665
Q ss_pred hhccCCCCchhHHHHHHHhhhcchhhhhhhhccccCCCCCCCCCCCCCccchhhhccccCCCccccccchhhhhcCCccE
Q 016003 265 YIDCGGPPEDLVRVVKERLKDKGLEGMLEHFDMSSSLMPYLSTSSSSDEESTATSKLTRSGKHSRSMSYSARMVRRAEAI 344 (397)
Q Consensus 265 ~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 344 (397)
++..+ . . .. .+...+|..+++
T Consensus 62 ~~~~~------------------~-------~--------------------------~~--------~~v~~~m~~~~~ 82 (141)
T 2rih_A 62 AVAQR------------------L-------D--------------------------LD--------GPAMPIANSPIT 82 (141)
T ss_dssp HHHTT------------------C-------C--------------------------TT--------SBSGGGCBCCCE
T ss_pred HHhcC------------------C-------C--------------------------CC--------CCHHHHcCCCCe
Confidence 32100 0 0 00 001235778999
Q ss_pred EeCCCCcHHHHHHHHHHcCCcEEEEEcCCCcEEEEEehHHHHHHHHH
Q 016003 345 VCHPTSSLMAVMIQAIAHRVTYVWVIEDDCTLTGIVTFSDLLKVFRK 391 (397)
Q Consensus 345 t~~~~~sl~~v~~~m~~~~i~rl~VVd~~~~lvGvVt~~DIl~~l~~ 391 (397)
+|+++ ++.+++++|.+++++++||+|++|+++|+||..||++++..
T Consensus 83 ~v~~~-~l~~a~~~m~~~~~~~l~Vvd~~g~~~Giit~~dll~~~~~ 128 (141)
T 2rih_A 83 VLDTD-PVHVAAEKMRRHNIRHVVVVNKNGELVGVLSIRDLCFERAI 128 (141)
T ss_dssp EETTS-BHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHSCHHH
T ss_pred EEcCC-CHHHHHHHHHHcCCeEEEEEcCCCcEEEEEEHHHHHHHHHH
Confidence 99999 99999999999999999999988999999999999987755
|
| >3fv6_A YQZB protein; CBS domain dimer, metabolism regulator, central glycolytic G regulator, transcription; 1.95A {Bacillus subtilis} PDB: 3fwr_A* 3fws_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=1.3e-16 Score=139.29 Aligned_cols=128 Identities=21% Similarity=0.246 Sum_probs=101.6
Q ss_pred cCCccccCCCCcCeEEEeCCCcHHHHHHHHHhcCCCCCEEEEEcCCCcEEEeeccCcccCcchhHHHHHhhcChhhhhhh
Q 016003 186 ALSIDSLGIISTDVVAVDYHSPASLALEAISRSLFDQTSVAVVDSDGFLIGEISPSTLGCCDETVAAAITTLSAGDLMAY 265 (397)
Q Consensus 186 ~~ti~~L~~~~~~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~is~~dl~~~~~~~~~~~~~ls~~Dl~~~ 265 (397)
..++++ +|+++ +++.+++++.+|++.|.++++ +.+||+|++|+++|+ ++.+|++..
T Consensus 16 ~~~v~~--im~~~-~~v~~~~~~~~a~~~m~~~~~--~~~~Vvd~~~~~~Gi-------------------vt~~dl~~~ 71 (159)
T 3fv6_A 16 KLQVKD--FQSIP-VVIHENVSVYDAICTMFLEDV--GTLFVVDRDAVLVGV-------------------LSRKDLLRA 71 (159)
T ss_dssp TCBGGG--SCBCC-CEEETTSBHHHHHHHHHHHTC--SEEEEECTTSCEEEE-------------------EEHHHHHHH
T ss_pred hCCHHH--HcCCC-EEECCCCcHHHHHHHHHHCCC--CEEEEEcCCCcEEEE-------------------EeHHHHHHH
Confidence 345665 78875 499999999999999999999 999999999999999 556776652
Q ss_pred hccCCCCchhHHHHHHHhhhcchhhhhhhhccccCCCCCCCCCCCCCccchhhhccccCCCccccccchhhhhcCC--cc
Q 016003 266 IDCGGPPEDLVRVVKERLKDKGLEGMLEHFDMSSSLMPYLSTSSSSDEESTATSKLTRSGKHSRSMSYSARMVRRA--EA 343 (397)
Q Consensus 266 ~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~ 343 (397)
+-.. ..+ . ..+..++|.. ++
T Consensus 72 ~~~~------------------------------~~~--------------------~--------~~~v~~~m~~~~~~ 93 (159)
T 3fv6_A 72 SIGQ------------------------------QEL--------------------T--------SVPVHIIMTRMPNI 93 (159)
T ss_dssp HTSC------------------------------SCT--------------------T--------TCBGGGTSEETTSC
T ss_pred hhcc------------------------------Ccc--------------------c--------CcCHHHHHcCCCCc
Confidence 2100 000 0 0001234666 88
Q ss_pred EEeCCCCcHHHHHHHHHHcCCcEEEEEcCCC---cEEEEEehHHHHHHHHHHHhh
Q 016003 344 IVCHPTSSLMAVMIQAIAHRVTYVWVIEDDC---TLTGIVTFSDLLKVFRKHLET 395 (397)
Q Consensus 344 it~~~~~sl~~v~~~m~~~~i~rl~VVd~~~---~lvGvVt~~DIl~~l~~~~~~ 395 (397)
++|++++++.+++.+|.+++++++||+|++| +++|+||..||++++.+-.+.
T Consensus 94 ~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~~~~~vGiit~~dil~~l~~~~~~ 148 (159)
T 3fv6_A 94 TVCRREDYVMDIAKHLIEKQIDALPVIKDTDKGFEVIGRVTKTNMTKILVSLSEN 148 (159)
T ss_dssp CCBCTTSBHHHHHHHHHHHTCSEEEEEEECSSSEEEEEEEEHHHHHHHHHHHHTT
T ss_pred EEECCCCCHHHHHHHHHHcCCcEEEEEeCCCcceeEEEEEEHHHHHHHHHHHhhc
Confidence 9999999999999999999999999999988 999999999999999876543
|
| >3sl7_A CBS domain-containing protein CBSX2; CBS-PAIR protein, redox regulator, plant CBS domain, thiored chloroplast, membrane protein; 1.91A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.70 E-value=3.5e-17 Score=144.63 Aligned_cols=149 Identities=15% Similarity=0.207 Sum_probs=102.1
Q ss_pred CCCc--CeEEEeCCCcHHHHHHHHHhcCCCCCEEEEEcCCCcEEEeeccCcccCcchhHHHHHhhcChhhhhhhhccCCC
Q 016003 194 IIST--DVVAVDYHSPASLALEAISRSLFDQTSVAVVDSDGFLIGEISPSTLGCCDETVAAAITTLSAGDLMAYIDCGGP 271 (397)
Q Consensus 194 ~~~~--~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~is~~dl~~~~~~~~~~~~~ls~~Dl~~~~~~~~~ 271 (397)
+|++ +++++.+++++.+|+++|.++++ +++||+|++|+++|+||..||.++..... .......+..-.. ..
T Consensus 9 im~~~~~~~~v~~~~~l~~a~~~m~~~~~--~~~pVvd~~~~~~Givt~~dl~~~~~~~~---~~~~~~~~~~~~~--~~ 81 (180)
T 3sl7_A 9 FMTPRQNLHVVKPSTSVDDALELLVEKKV--TGLPVIDDNWTLVGVVSDYDLLALDSISG---RSQNDTNLFPDVD--ST 81 (180)
T ss_dssp HSEEGGGCCCBCTTSBHHHHHHHHHHHTC--SEEEEECTTCBEEEEEEHHHHTCC------------------------C
T ss_pred hcCCCCCceeeCCCCcHHHHHHHHHHcCC--CeEEEECCCCeEEEEEEHHHHHhhhhhcc---ccCCccccccccc--ch
Confidence 6887 89999999999999999999999 99999999999999977666655220000 0000000000000 00
Q ss_pred CchhHHHHHHHhhhcchhhhhhhhccccCCCCCCCCCCCCCccchhhhccccCCCccccccchhhhhcCCccEEeCCCCc
Q 016003 272 PEDLVRVVKERLKDKGLEGMLEHFDMSSSLMPYLSTSSSSDEESTATSKLTRSGKHSRSMSYSARMVRRAEAIVCHPTSS 351 (397)
Q Consensus 272 ~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~~~~s 351 (397)
+. .+..+.... ......+...+|..++++|+++++
T Consensus 82 ~~-------------~~~~~~~~~--------------------------------~~~~~~~v~~~m~~~~~~v~~~~~ 116 (180)
T 3sl7_A 82 WK-------------TFNELQKLI--------------------------------SKTYGKVVGDLMTPSPLVVRDSTN 116 (180)
T ss_dssp CC-------------SHHHHHHHH--------------------------------HTTTTCBHHHHSEESCCCEETTSB
T ss_pred hh-------------hhHHHHHHH--------------------------------hccccccHHHHhCCCceEeCCCCc
Confidence 00 000000000 000011234568888999999999
Q ss_pred HHHHHHHHHHcCCcEEEEEcCCCcEEEEEehHHHHHHHHHHHh
Q 016003 352 LMAVMIQAIAHRVTYVWVIEDDCTLTGIVTFSDLLKVFRKHLE 394 (397)
Q Consensus 352 l~~v~~~m~~~~i~rl~VVd~~~~lvGvVt~~DIl~~l~~~~~ 394 (397)
+.+++.+|.+++++++||+|++|+++|+||+.||++++.+..+
T Consensus 117 l~~a~~~m~~~~~~~lpVvd~~g~~vGiit~~dil~~~~~~~~ 159 (180)
T 3sl7_A 117 LEDAARLLLETKFRRLPVVDADGKLIGILTRGNVVRAALQIKR 159 (180)
T ss_dssp HHHHHHHHTTSTTCEEEEECTTCBEEEEEEHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCEEEEECCCCeEEEEEEHHHHHHHHHHHhh
Confidence 9999999999999999999988999999999999999987654
|
| >3oco_A Hemolysin-like protein containing CBS domains; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.20A {Oenococcus oeni} | Back alignment and structure |
|---|
Probab=99.70 E-value=3.1e-17 Score=142.32 Aligned_cols=123 Identities=20% Similarity=0.221 Sum_probs=99.7
Q ss_pred cCCccccCCCCc--CeEEEeCCCcHHHHHHHHHhcCCCCCEEEEE-cC-CCcEEEeeccCcccCcchhHHHHHhhcChhh
Q 016003 186 ALSIDSLGIIST--DVVAVDYHSPASLALEAISRSLFDQTSVAVV-DS-DGFLIGEISPSTLGCCDETVAAAITTLSAGD 261 (397)
Q Consensus 186 ~~ti~~L~~~~~--~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVV-d~-~g~lvG~is~~dl~~~~~~~~~~~~~ls~~D 261 (397)
..++++ +|++ +++++.+++++.+|++.|.++++ +++||+ |+ +|+++|+ ++.+|
T Consensus 19 ~~~v~~--iM~~~~~~~~v~~~~~~~~a~~~m~~~~~--~~~pVv~d~~~~~lvGi-------------------vt~~d 75 (153)
T 3oco_A 19 DKVASD--VMVDRTSMSVVDVDETIADALLLYLEEQY--SRFPVTADNDKDKIIGY-------------------AYNYD 75 (153)
T ss_dssp HCBHHH--HSEEGGGCCCEETTSBHHHHHHHHHHHCC--SEEEEEETTEEEEEEEE-------------------EEHHH
T ss_pred CCEeee--EecchhheEEEcCCCCHHHHHHHHHhCCC--CEEEEEECCCCCcEEEE-------------------EEHHH
Confidence 455665 7886 89999999999999999999999 999999 65 4899999 55677
Q ss_pred hhhhhccCCCCchhHHHHHHHhhhcchhhhhhhhccccCCCCCCCCCCCCCccchhhhccccCCCccccccchhhhhcCC
Q 016003 262 LMAYIDCGGPPEDLVRVVKERLKDKGLEGMLEHFDMSSSLMPYLSTSSSSDEESTATSKLTRSGKHSRSMSYSARMVRRA 341 (397)
Q Consensus 262 l~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (397)
++..+.. . . ... ...+| +
T Consensus 76 l~~~~~~-------------~-------------~---------------------------~~~--------v~~~m-~ 93 (153)
T 3oco_A 76 IVRQARI-------------D-------------D---------------------------KAK--------ISTIM-R 93 (153)
T ss_dssp HHHHHHH-------------H-------------T---------------------------TSB--------GGGTC-B
T ss_pred HHhHHhc-------------C-------------C---------------------------CCc--------HHHHh-C
Confidence 7652210 0 0 000 11346 7
Q ss_pred ccEEeCCCCcHHHHHHHHHHcCCcEEEEEcCCCcEEEEEehHHHHHHHHHHH
Q 016003 342 EAIVCHPTSSLMAVMIQAIAHRVTYVWVIEDDCTLTGIVTFSDLLKVFRKHL 393 (397)
Q Consensus 342 ~~it~~~~~sl~~v~~~m~~~~i~rl~VVd~~~~lvGvVt~~DIl~~l~~~~ 393 (397)
++++|.+++++.+++.+|.+++++++||+|++|+++||||+.||++++...+
T Consensus 94 ~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~~g~~vGivt~~dil~~l~~~~ 145 (153)
T 3oco_A 94 DIVSVPENMKVPDVMEEMSAHRVPMAIVIDEYGGTSGIITDKDVYEELFGNL 145 (153)
T ss_dssp CCEEEETTSBHHHHHHHHHHTTCSCEEEECTTSCEEEEECHHHHHHHHHC--
T ss_pred CCeEECCCCCHHHHHHHHHHcCCcEEEEEeCCCCEEEEeeHHHHHHHHhccC
Confidence 8999999999999999999999999999999999999999999999998654
|
| >3k6e_A CBS domain protein; streptococcus pneumoniae TIGR4, structural genomics, PSI-2, protein structure initiative; 2.81A {Streptococcus pneumoniae} | Back alignment and structure |
|---|
Probab=99.69 E-value=1e-16 Score=140.40 Aligned_cols=135 Identities=16% Similarity=0.147 Sum_probs=110.5
Q ss_pred cccchhhhhhcCCCCeEEEeCChhHHHHHHHHhhCCCceEEEEccCCCCCCCCCCCCCCCeEEEEEehhHHHHHHhhcCC
Q 016003 5 LLADEVSDLCLGKPALRALSISAAIADALSALKNSDESFISVWDCNCCSNHRKLGDACECQCVGKVCMVDVICYLCKDSN 84 (397)
Q Consensus 5 ~~~~~v~dl~~~k~~li~v~~~~tv~~Al~~L~~~~I~s~PV~d~~~~~~~~~~~~~~~~~~vGiv~~~Dil~~l~~~~~ 84 (397)
|...++.++|....+++++++++|+.+|+++|.+++++++||+|. +++++|+|+..|++.++.....
T Consensus 12 ~l~~~~~~iM~P~~~v~~v~~~~t~~~a~~~m~~~~~s~~pVvd~-------------~~~lvGiit~~Di~~~~~~~~~ 78 (156)
T 3k6e_A 12 FLLGQEETFLTPAKNLAVLIDTHNADHATLLLSQMTYTRVPVVTD-------------EKQFVGTIGLRDIMAYQMEHDL 78 (156)
T ss_dssp HHHTTGGGGEEETTSSCCEETTSBHHHHHHHHTTSSSSEEEEECC--------------CBEEEEEEHHHHHHHHHHHTC
T ss_pred HhhccHHHhCcchhHeEEECCcCCHHHHHHHHHHcCCcEEEEEcC-------------CCcEEEEEEecchhhhhhhccc
Confidence 345678999988789999999999999999999999999999986 3689999999999999876321
Q ss_pred CCChhhhhcCChhhhccCCCCCceEEeCCCCCHHHHHHHHhcCCceEEEeccCcchhhhhhhcccccccccCCCCceeee
Q 016003 85 SLSPSLALKQPVSVLLPQLLPPLVMHVEPSCSLLEAMDLMLGGAQNLVVPIKNRLSIKRKQQQKLSSSSLTNHNGREFCW 164 (397)
Q Consensus 85 l~~~~~~~~~~V~~lm~~~~~~~~~~V~~~~sL~~al~~m~~g~~r~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I 164 (397)
......+.+|+++|... ++++.+++++.+|++.|.+. +.++|+++ .|+.+||
T Consensus 79 --~~~~~~~~~v~~im~~~----~~~v~~~~~l~~~~~~m~~~-~~lpVVd~---------------------~g~l~Gi 130 (156)
T 3k6e_A 79 --SQEIMADTDIVHMTKTD----VAVVSPDFTITEVLHKLVDE-SFLPVVDA---------------------EGIFQGI 130 (156)
T ss_dssp --CHHHHTTSBGGGTCBCS----CCCBCTTCCHHHHHHHTTTS-SEEEEECT---------------------TSBEEEE
T ss_pred --ccccccccCHHHhhcCC----ceecccccHHHHHHHHHHHc-CCeEEEec---------------------CCEEEEE
Confidence 22345678999999765 89999999999999999842 33677643 2578899
Q ss_pred ecHHHHHHHHHhccCC
Q 016003 165 LTQEDIIRFILSSISL 180 (397)
Q Consensus 165 ITq~DIi~~l~~~~~~ 180 (397)
||+.||++.+....+.
T Consensus 131 iT~~Dil~~~~~~~~~ 146 (156)
T 3k6e_A 131 ITRKSILKAVNALLHD 146 (156)
T ss_dssp EEHHHHHHHHHHHSCC
T ss_pred EEHHHHHHHHHHHhcc
Confidence 9999999998764433
|
| >2o16_A Acetoin utilization protein ACUB, putative; structural genomics, unknown function, PSI-2, protein struct initiative; 1.90A {Vibrio cholerae} SCOP: d.37.1.1 | Back alignment and structure |
|---|
Probab=99.69 E-value=1.5e-16 Score=139.15 Aligned_cols=133 Identities=18% Similarity=0.217 Sum_probs=102.1
Q ss_pred CCccccCCCCcCeEEEeCCCcHHHHHHHHHhcCCCCCEEEEEcCCCcEEEeeccCcccCcchhHHHHHhhcChhhhhhhh
Q 016003 187 LSIDSLGIISTDVVAVDYHSPASLALEAISRSLFDQTSVAVVDSDGFLIGEISPSTLGCCDETVAAAITTLSAGDLMAYI 266 (397)
Q Consensus 187 ~ti~~L~~~~~~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~is~~dl~~~~~~~~~~~~~ls~~Dl~~~~ 266 (397)
.++++ +|+++++++.+++++.+|+++|.++++ +++||+|++|+++|+| +.+|++.++
T Consensus 5 ~~v~d--im~~~~~~v~~~~tl~~a~~~m~~~~~--~~~pVvd~~~~lvGiv-------------------t~~dl~~~~ 61 (160)
T 2o16_A 5 IKVED--MMTRHPHTLLRTHTLNDAKHLMEALDI--RHVPIVDANKKLLGIV-------------------SQRDLLAAQ 61 (160)
T ss_dssp CBGGG--TSEESCCCBCTTSBHHHHHHHHHHHTC--SEEEEECTTCBEEEEE-------------------EHHHHHHHH
T ss_pred CcHHH--HhcCCCeEECCCCcHHHHHHHHHHcCC--CEEEEEcCCCcEEEEE-------------------eHHHHHHHH
Confidence 34555 799999999999999999999999999 9999999999999995 466665422
Q ss_pred ccCCCCchhHHHHHHHhhhcchhhhhhhhccccCCCCCCCCCCCCCccchhhhccccCCCccccccchhhhhcCCccEEe
Q 016003 267 DCGGPPEDLVRVVKERLKDKGLEGMLEHFDMSSSLMPYLSTSSSSDEESTATSKLTRSGKHSRSMSYSARMVRRAEAIVC 346 (397)
Q Consensus 267 ~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~ 346 (397)
.. .+ ... ... . .. . ...+...+|..++++|
T Consensus 62 ~~-------------~~-----~~~---~~~--~----------------~~-----~------~~~~v~~im~~~~~~v 91 (160)
T 2o16_A 62 ES-------------SL-----QRS---AQG--D----------------SL-----A------FETPLFEVMHTDVTSV 91 (160)
T ss_dssp HH-------------HC-----C-----------------------------------------CCCBHHHHSCSCEEEB
T ss_pred HH-------------hh-----ccc---ccc--c----------------ch-----h------cccCHHHHhcCCCeEE
Confidence 10 00 000 000 0 00 0 0111234678899999
Q ss_pred CCCCcHHHHHHHHHHcCCcEEEEEcCCCcEEEEEehHHHHHHHHHHH
Q 016003 347 HPTSSLMAVMIQAIAHRVTYVWVIEDDCTLTGIVTFSDLLKVFRKHL 393 (397)
Q Consensus 347 ~~~~sl~~v~~~m~~~~i~rl~VVd~~~~lvGvVt~~DIl~~l~~~~ 393 (397)
++++++.+++.+|.+++++++||+|+ |+++||||..||++++.+.+
T Consensus 92 ~~~~~l~~a~~~m~~~~~~~lpVvd~-g~lvGiit~~dil~~~~~~~ 137 (160)
T 2o16_A 92 APQAGLKESAIYMQKHKIGCLPVVAK-DVLVGIITDSDFVTIAINLL 137 (160)
T ss_dssp CTTSBHHHHHHHHHHTTCSCEEEEET-TEEEEEECHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHhCCCEEEEEEC-CEEEEEEEHHHHHHHHHHHh
Confidence 99999999999999999999999998 99999999999999987754
|
| >1pbj_A Hypothetical protein; structural genomics, domain, PSI, protein structure initiative; 1.40A {Methanothermobacter thermautotrophicusdelta H} SCOP: d.37.1.1 | Back alignment and structure |
|---|
Probab=99.69 E-value=1.3e-16 Score=132.61 Aligned_cols=118 Identities=19% Similarity=0.248 Sum_probs=95.9
Q ss_pred CCCcCeEEEeCCCcHHHHHHHHHhcCCCCCEEEEEcCCCcEEEeeccCcccCcchhHHHHHhhcChhhhhhhhccCCCCc
Q 016003 194 IISTDVVAVDYHSPASLALEAISRSLFDQTSVAVVDSDGFLIGEISPSTLGCCDETVAAAITTLSAGDLMAYIDCGGPPE 273 (397)
Q Consensus 194 ~~~~~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~is~~dl~~~~~~~~~~~~~ls~~Dl~~~~~~~~~~~ 273 (397)
+|+++++++.+++++.+|++.|.++++ +.+||+| +|+++|+ ++.+|++.++..+
T Consensus 6 ~m~~~~~~v~~~~~~~~a~~~~~~~~~--~~~~Vvd-~~~~~G~-------------------it~~dl~~~~~~~---- 59 (125)
T 1pbj_A 6 VMVTDVDTIDITASLEDVLRNYVENAK--GSSVVVK-EGVRVGI-------------------VTTWDVLEAIAEG---- 59 (125)
T ss_dssp HCBCSCCEEETTCBHHHHHHHHHHHCC--CEEEEEE-TTEEEEE-------------------EEHHHHHHHHHHT----
T ss_pred hcCCCceEECCCCcHHHHHHHHHHcCC--CEEEEEe-CCeeEEE-------------------EeHHHHHHHHhcC----
Confidence 688899999999999999999999999 9999999 8999999 4566666522100
Q ss_pred hhHHHHHHHhhhcchhhhhhhhccccCCCCCCCCCCCCCccchhhhccccCCCccccccchhhhhcCCccEEeCCCCcHH
Q 016003 274 DLVRVVKERLKDKGLEGMLEHFDMSSSLMPYLSTSSSSDEESTATSKLTRSGKHSRSMSYSARMVRRAEAIVCHPTSSLM 353 (397)
Q Consensus 274 ~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~~~~sl~ 353 (397)
. .+ . ..+...+|..++++|++++++.
T Consensus 60 --------------~------------~~--------------------~--------~~~v~~~m~~~~~~v~~~~~l~ 85 (125)
T 1pbj_A 60 --------------D------------DL--------------------A--------EVKVWEVMERDLVTISPRATIK 85 (125)
T ss_dssp --------------C------------CT--------------------T--------TSBHHHHCBCGGGEECTTSCHH
T ss_pred --------------C------------cc--------------------c--------ccCHHHHcCCCCeEECCCCCHH
Confidence 0 00 0 0012245777999999999999
Q ss_pred HHHHHHHHcCCcEEEEEcCCCcEEEEEehHHHHHHHHHH
Q 016003 354 AVMIQAIAHRVTYVWVIEDDCTLTGIVTFSDLLKVFRKH 392 (397)
Q Consensus 354 ~v~~~m~~~~i~rl~VVd~~~~lvGvVt~~DIl~~l~~~ 392 (397)
+++++|.+++++++||+|+ |+++|+||..||++++.++
T Consensus 86 ~~~~~~~~~~~~~l~Vvd~-~~~~Gvit~~dl~~~l~~~ 123 (125)
T 1pbj_A 86 EAAEKMVKNVVWRLLVEED-DEIIGVISATDILRAKMAK 123 (125)
T ss_dssp HHHHHHHHHTCSEEEEEET-TEEEEEEEHHHHHHHHC--
T ss_pred HHHHHHHhcCCcEEEEEEC-CEEEEEEEHHHHHHHHHhc
Confidence 9999999999999999998 9999999999999998653
|
| >3kxr_A Magnesium transporter, putative; cystathionine beta-synthase, Mg2+ transporter, structural GE PSI-2, protein structure initiative; 2.41A {Shewanella oneidensis mr-1} | Back alignment and structure |
|---|
Probab=99.68 E-value=3.6e-16 Score=143.19 Aligned_cols=122 Identities=15% Similarity=0.144 Sum_probs=102.3
Q ss_pred ccCCccccCCCCcCeEEEeCCCcHHHHHHHHHhc---CCCCCEEEEEcCCCcEEEeeccCcccCcchhHHHHHhhcChhh
Q 016003 185 PALSIDSLGIISTDVVAVDYHSPASLALEAISRS---LFDQTSVAVVDSDGFLIGEISPSTLGCCDETVAAAITTLSAGD 261 (397)
Q Consensus 185 ~~~ti~~L~~~~~~v~tv~~~~~~~~a~~~m~~~---~i~~s~vpVVd~~g~lvG~is~~dl~~~~~~~~~~~~~ls~~D 261 (397)
...++++ +|+++++++.+++++.+|++.|.++ ++ +.+||+|++|+++|+|| .+|
T Consensus 52 ~~~~v~~--iM~~~~~~v~~~~tv~eal~~~~~~~~~~~--~~~~Vvd~~~~lvGivt-------------------~~d 108 (205)
T 3kxr_A 52 SENEIGR--YTDHQMLVLSDKATVAQAQRFFRRIELDCN--DNLFIVDEADKYLGTVR-------------------RYD 108 (205)
T ss_dssp CTTCGGG--GCBCCCCEEETTCBHHHHHHHHHHCCCTTC--CEEEEECTTCBEEEEEE-------------------HHH
T ss_pred CcchHHh--hccCceEEECCCCcHHHHHHHHHhhCccCe--eEEEEEcCCCeEEEEEE-------------------HHH
Confidence 3556766 7999999999999999999999987 77 99999999999999954 555
Q ss_pred hhhhhccCCCCchhHHHHHHHhhhcchhhhhhhhccccCCCCCCCCCCCCCccchhhhccccCCCccccccchhhhhcCC
Q 016003 262 LMAYIDCGGPPEDLVRVVKERLKDKGLEGMLEHFDMSSSLMPYLSTSSSSDEESTATSKLTRSGKHSRSMSYSARMVRRA 341 (397)
Q Consensus 262 l~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (397)
++.... ... ...+|..
T Consensus 109 ll~~~~--------------------------------------------------------~~~--------v~~im~~ 124 (205)
T 3kxr_A 109 IFKHEP--------------------------------------------------------HEP--------LISLLSE 124 (205)
T ss_dssp HTTSCT--------------------------------------------------------TSB--------GGGGCCS
T ss_pred HHhCCC--------------------------------------------------------cch--------HHHHhcC
Confidence 543000 000 1135778
Q ss_pred ccEEeCCCCcHHHHHHHHHHcCCcEEEEEcCCCcEEEEEehHHHHHHHHHHH
Q 016003 342 EAIVCHPTSSLMAVMIQAIAHRVTYVWVIEDDCTLTGIVTFSDLLKVFRKHL 393 (397)
Q Consensus 342 ~~it~~~~~sl~~v~~~m~~~~i~rl~VVd~~~~lvGvVt~~DIl~~l~~~~ 393 (397)
++++|++++++.+++.+|.+++++++||||++|+++|+||..||++++.++.
T Consensus 125 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVVD~~g~lvGiIT~~Dil~~i~~e~ 176 (205)
T 3kxr_A 125 DSRALTANTTLLDAAEAIEHSREIELPVIDDAGELIGRVTLRAATALVREHY 176 (205)
T ss_dssp SCCCEETTSCHHHHHHHHHTSSCSEEEEECTTSBEEEEEEHHHHHHHHHHHH
T ss_pred CCeEECCCCCHHHHHHHHHhcCCCEEEEEcCCCeEEEEEEHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999998764
|
| >1y5h_A Hypothetical protein RV2626C; CBS domain, unknown function; 1.50A {Mycobacterium tuberculosis} SCOP: d.37.1.1 PDB: 1xkf_A | Back alignment and structure |
|---|
Probab=99.68 E-value=5.8e-17 Score=136.50 Aligned_cols=124 Identities=21% Similarity=0.289 Sum_probs=98.7
Q ss_pred cCCccccCCCCcCeEEEeCCCcHHHHHHHHHhcCCCCCEEEEEcCCCcEEEeeccCcccCcchhHHHHHhhcChhhhh-h
Q 016003 186 ALSIDSLGIISTDVVAVDYHSPASLALEAISRSLFDQTSVAVVDSDGFLIGEISPSTLGCCDETVAAAITTLSAGDLM-A 264 (397)
Q Consensus 186 ~~ti~~L~~~~~~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~is~~dl~~~~~~~~~~~~~ls~~Dl~-~ 264 (397)
..++++ +|+++++++.+++++.+|++.|.++++ +++||+|++|+++|+| +.+|++ .
T Consensus 7 ~~~v~~--im~~~~~~v~~~~~~~~a~~~~~~~~~--~~~~Vvd~~~~~~Giv-------------------t~~dl~~~ 63 (133)
T 1y5h_A 7 MTTARD--IMNAGVTCVGEHETLTAAAQYMREHDI--GALPICGDDDRLHGML-------------------TDRDIVIK 63 (133)
T ss_dssp -CCHHH--HSEETCCCEETTSBHHHHHHHHHHHTC--SEEEEECGGGBEEEEE-------------------EHHHHHHT
T ss_pred hcCHHH--HhcCCceEeCCCCCHHHHHHHHHHhCC--CeEEEECCCCeEEEEE-------------------eHHHHHHH
Confidence 345655 688899999999999999999999999 9999999889999994 566665 2
Q ss_pred hhccCCCCchhHHHHHHHhhhcchhhhhhhhccccCCCCCCCCCCCCCccchhhhccccCCCccccccchhhhhcCCccE
Q 016003 265 YIDCGGPPEDLVRVVKERLKDKGLEGMLEHFDMSSSLMPYLSTSSSSDEESTATSKLTRSGKHSRSMSYSARMVRRAEAI 344 (397)
Q Consensus 265 ~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 344 (397)
++..+ . .+ . ..+...+|..+++
T Consensus 64 ~~~~~------------------~-------------~~-------------------~--------~~~v~~~m~~~~~ 85 (133)
T 1y5h_A 64 GLAAG------------------L-------------DP-------------------N--------TATAGELARDSIY 85 (133)
T ss_dssp TGGGT------------------C-------------CT-------------------T--------TSBHHHHHTTCCC
T ss_pred HHhcC------------------C-------------Cc-------------------c--------ccCHHHHhcCCCE
Confidence 22100 0 00 0 0012245778999
Q ss_pred EeCCCCcHHHHHHHHHHcCCcEEEEEcCCCcEEEEEehHHHHHHHHH
Q 016003 345 VCHPTSSLMAVMIQAIAHRVTYVWVIEDDCTLTGIVTFSDLLKVFRK 391 (397)
Q Consensus 345 t~~~~~sl~~v~~~m~~~~i~rl~VVd~~~~lvGvVt~~DIl~~l~~ 391 (397)
+|++++++.+++++|.+++++++||+|+ |+++|+||..||++++.+
T Consensus 86 ~v~~~~~l~~~~~~m~~~~~~~l~Vvd~-g~~~Giit~~dil~~l~~ 131 (133)
T 1y5h_A 86 YVDANASIQEMLNVMEEHQVRRVPVISE-HRLVGIVTEADIARHLPE 131 (133)
T ss_dssp CEETTCCHHHHHHHHHHHTCSEEEEEET-TEEEEEEEHHHHHHTCC-
T ss_pred EECCCCCHHHHHHHHHHcCCCEEEEEEC-CEEEEEEEHHHHHHHHHh
Confidence 9999999999999999999999999998 899999999999998754
|
| >3oi8_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADN; 1.99A {Neisseria meningitidis serogroup B} | Back alignment and structure |
|---|
Probab=99.68 E-value=1.5e-16 Score=138.58 Aligned_cols=116 Identities=20% Similarity=0.302 Sum_probs=93.3
Q ss_pred cCCccccCCCCc--CeEEEeCCCcHHHHHHHHHhcCCCCCEEEEEcCCC-cEEEeeccCcccCcchhHHHHHhhcChhhh
Q 016003 186 ALSIDSLGIIST--DVVAVDYHSPASLALEAISRSLFDQTSVAVVDSDG-FLIGEISPSTLGCCDETVAAAITTLSAGDL 262 (397)
Q Consensus 186 ~~ti~~L~~~~~--~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g-~lvG~is~~dl~~~~~~~~~~~~~ls~~Dl 262 (397)
..++++ +|++ +++++++++++.+|++.|.++++ +++||+|+++ +++|+|| .+|+
T Consensus 37 ~~~v~d--iM~~~~~~~~v~~~~~i~~a~~~m~~~~~--~~~pVvd~~~~~lvGivt-------------------~~dl 93 (156)
T 3oi8_A 37 DLEVRD--AMITRSRMNVLKENDSIERITAYVIDTAH--SRFPVIGEDKDEVLGILH-------------------AKDL 93 (156)
T ss_dssp TCBGGG--TCEEGGGCCCEETTCCHHHHHHHHHHHCC--SEEEEESSSTTCEEEEEE-------------------GGGG
T ss_pred CCCHhh--eeeeHHHeEEECCCCCHHHHHHHHHHCCC--CEEEEEcCCCCcEEEEEE-------------------HHHH
Confidence 456666 7986 79999999999999999999999 9999999885 9999965 4555
Q ss_pred hhhhccCCCCchhHHHHHHHhhhcchhhhhhhhccccCCCCCCCCCCCCCccchhhhccccCCCccccccchhhhhcCCc
Q 016003 263 MAYIDCGGPPEDLVRVVKERLKDKGLEGMLEHFDMSSSLMPYLSTSSSSDEESTATSKLTRSGKHSRSMSYSARMVRRAE 342 (397)
Q Consensus 263 ~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (397)
+..+.. + . ..+...+|. +
T Consensus 94 ~~~~~~------------------~-~------------------------------------------~~~v~~im~-~ 111 (156)
T 3oi8_A 94 LKYMFN------------------P-E------------------------------------------QFHLKSILR-P 111 (156)
T ss_dssp GGGSSC------------------G-G------------------------------------------GCCHHHHCB-C
T ss_pred HHHHHc------------------C-C------------------------------------------cccHHHHcC-C
Confidence 442110 0 0 000112454 4
Q ss_pred cEEeCCCCcHHHHHHHHHHcCCcEEEEEcCCCcEEEEEehHHHH
Q 016003 343 AIVCHPTSSLMAVMIQAIAHRVTYVWVIEDDCTLTGIVTFSDLL 386 (397)
Q Consensus 343 ~it~~~~~sl~~v~~~m~~~~i~rl~VVd~~~~lvGvVt~~DIl 386 (397)
++++++++++.+++.+|.+++++++||+|++|+++||||+.||+
T Consensus 112 ~~~v~~~~~l~~a~~~m~~~~~~~~~Vvd~~g~~~Givt~~Dil 155 (156)
T 3oi8_A 112 AVFVPEGKSLTALLKEFREQRNHMAIVIDEYGGTSGLVTFEDII 155 (156)
T ss_dssp CCEEETTSBHHHHHHHHHHTTCCEEEEECTTSSEEEEEEHHHHC
T ss_pred CEEECCCCCHHHHHHHHHhcCCeEEEEECCCCCEEEEEEHHHhc
Confidence 89999999999999999999999999999999999999999986
|
| >1pvm_A Conserved hypothetical protein TA0289; structural genomics, CBS domain, PSI, protein structure initiative; 1.50A {Thermoplasma acidophilum dsm 1728} SCOP: d.37.1.1 g.41.13.1 PDB: 2qh1_A | Back alignment and structure |
|---|
Probab=99.68 E-value=2.3e-16 Score=141.02 Aligned_cols=125 Identities=17% Similarity=0.264 Sum_probs=101.4
Q ss_pred CCccccCCCCcCeEEEeCCCcHHHHHHHHHhcCCCCCEEEEEcCCCcEEEeeccCcccCcchhHHHHHhhcChhhhhhhh
Q 016003 187 LSIDSLGIISTDVVAVDYHSPASLALEAISRSLFDQTSVAVVDSDGFLIGEISPSTLGCCDETVAAAITTLSAGDLMAYI 266 (397)
Q Consensus 187 ~ti~~L~~~~~~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~is~~dl~~~~~~~~~~~~~ls~~Dl~~~~ 266 (397)
.++++ +|+++++++++++++.+|+++|.++++ +++||+|++|+++|+ ++.+|++.++
T Consensus 9 ~~v~~--im~~~~~~v~~~~~l~ea~~~~~~~~~--~~~pVvd~~g~~vGi-------------------vt~~dl~~~~ 65 (184)
T 1pvm_A 9 MRVEK--IMNSNFKTVNWNTTVFDAVKIMNENHL--YGLVVKDDNGNDVGL-------------------LSERSIIKRF 65 (184)
T ss_dssp CBGGG--TSBTTCCEEETTCBHHHHHHHHHHHTC--CEEEEECTTSCEEEE-------------------EEHHHHHHHT
T ss_pred cCHHH--hcCCCCeEECCCCcHHHHHHHHHHcCC--CEEEEEcCCCcEEEE-------------------EeHHHHHHHH
Confidence 55665 799999999999999999999999999 999999988999999 4566666522
Q ss_pred ccCCCCchhHHHHHHHhhhcchhhhhhhhccccCCCCCCCCCCCCCccchhhhccccCCCccccccchhhhhcCCccEEe
Q 016003 267 DCGGPPEDLVRVVKERLKDKGLEGMLEHFDMSSSLMPYLSTSSSSDEESTATSKLTRSGKHSRSMSYSARMVRRAEAIVC 346 (397)
Q Consensus 267 ~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~ 346 (397)
.. . . ... . ..+...+|..+++++
T Consensus 66 ~~-----------------~---------~---~~~--------------------~--------~~~v~~im~~~~~~v 88 (184)
T 1pvm_A 66 IP-----------------R---------N---KKP--------------------D--------EVPIRLVMRKPIPKV 88 (184)
T ss_dssp GG-----------------G---------C---CCG--------------------G--------GSBGGGTSBSSCCEE
T ss_pred hh-----------------c---------c---cCc--------------------c--------cCCHHHHhCCCCcEE
Confidence 10 0 0 000 0 001123577799999
Q ss_pred CCCCcHHHHHHHHHHcCCcEEEEEcCCCcEEEEEehHHHHHHHHH
Q 016003 347 HPTSSLMAVMIQAIAHRVTYVWVIEDDCTLTGIVTFSDLLKVFRK 391 (397)
Q Consensus 347 ~~~~sl~~v~~~m~~~~i~rl~VVd~~~~lvGvVt~~DIl~~l~~ 391 (397)
++++++.+++++|.+++++++||+|++|+++|+||..||++++.+
T Consensus 89 ~~~~~l~~a~~~m~~~~~~~lpVvd~~g~~~Givt~~dll~~~~~ 133 (184)
T 1pvm_A 89 KSDYDVKDVAAYLSENGLERCAVVDDPGRVVGIVTLTDLSRYLSR 133 (184)
T ss_dssp ETTCBHHHHHHHHHHHTCSEEEEECTTCCEEEEEEHHHHTTTSCH
T ss_pred CCCCCHHHHHHHHHHcCCcEEEEEcCCCeEEEEEEHHHHHHHHHh
Confidence 999999999999999999999999998999999999999998766
|
| >2rc3_A CBS domain; in SITU proteolysis, BR, structural genomics, PSI-2, protein structure initiative; HET: NAD; 1.60A {Nitrosomonas europaea atcc 19718} SCOP: d.37.1.1 | Back alignment and structure |
|---|
Probab=99.68 E-value=1.9e-16 Score=133.77 Aligned_cols=123 Identities=15% Similarity=0.193 Sum_probs=97.7
Q ss_pred CccccCCCC---cCeEEEeCCCcHHHHHHHHHhcCCCCCEEEEEcCCCcEEEeeccCcccCcchhHHHHHhhcChhhhhh
Q 016003 188 SIDSLGIIS---TDVVAVDYHSPASLALEAISRSLFDQTSVAVVDSDGFLIGEISPSTLGCCDETVAAAITTLSAGDLMA 264 (397)
Q Consensus 188 ti~~L~~~~---~~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~is~~dl~~~~~~~~~~~~~ls~~Dl~~ 264 (397)
++++ +|+ ++++++++++++.+|++.|.++++ +++||+| +|+++|+ ++.+|++.
T Consensus 7 ~v~~--im~~~~~~~~~v~~~~~~~~a~~~~~~~~~--~~~~Vvd-~~~~~Gi-------------------vt~~dl~~ 62 (135)
T 2rc3_A 7 TVKH--LLQEKGHTVVAIGPDDSVFNAMQKMAADNI--GALLVMK-DEKLVGI-------------------LTERDFSR 62 (135)
T ss_dssp BHHH--HHHHHCCCCCEECTTSBHHHHHHHHHHHTC--SEEEEEE-TTEEEEE-------------------EEHHHHHH
T ss_pred eHHH--HHhcCCCCcEEECCCCcHHHHHHHHHhcCC--CEEEEEE-CCEEEEE-------------------EehHHHHH
Confidence 4444 687 889999999999999999999999 9999999 8999999 45666664
Q ss_pred h-hccCCCCchhHHHHHHHhhhcchhhhhhhhccccCCCCCCCCCCCCCccchhhhccccCCCccccccchhhhhcCCcc
Q 016003 265 Y-IDCGGPPEDLVRVVKERLKDKGLEGMLEHFDMSSSLMPYLSTSSSSDEESTATSKLTRSGKHSRSMSYSARMVRRAEA 343 (397)
Q Consensus 265 ~-~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (397)
. ... +.. + . .....++|..++
T Consensus 63 ~~~~~------------------~~~------------~--------------~--------------~~~v~~~m~~~~ 84 (135)
T 2rc3_A 63 KSYLL------------------DKP------------V--------------K--------------DTQVKEIMTRQV 84 (135)
T ss_dssp HGGGS------------------SSC------------G--------------G--------------GSBGGGTSBCSC
T ss_pred HHHHc------------------CCC------------c--------------c--------------cCCHHHhccCCC
Confidence 1 110 000 0 0 001123577899
Q ss_pred EEeCCCCcHHHHHHHHHHcCCcEEEEEcCCCcEEEEEehHHHHHHHHHHH
Q 016003 344 IVCHPTSSLMAVMIQAIAHRVTYVWVIEDDCTLTGIVTFSDLLKVFRKHL 393 (397)
Q Consensus 344 it~~~~~sl~~v~~~m~~~~i~rl~VVd~~~~lvGvVt~~DIl~~l~~~~ 393 (397)
++|++++++.+++++|.+++++++||+| +|+++|+||..||++++.++.
T Consensus 85 ~~v~~~~~l~~~~~~m~~~~~~~lpVvd-~g~~~Giit~~dll~~~~~~~ 133 (135)
T 2rc3_A 85 AYVDLNNTNEDCMALITEMRVRHLPVLD-DGKVIGLLSIGDLVKDAISQH 133 (135)
T ss_dssp CCBCTTCBHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHHHHC--
T ss_pred eEECCCCcHHHHHHHHHHhCCCEEEEEe-CCEEEEEEEHHHHHHHHHhcc
Confidence 9999999999999999999999999999 699999999999999987654
|
| >2emq_A Hypothetical conserved protein; CBS domains, NPPSFA, national project on protein structural functional analyses; 2.50A {Geobacillus kaustophilus} | Back alignment and structure |
|---|
Probab=99.68 E-value=2.6e-16 Score=136.31 Aligned_cols=132 Identities=21% Similarity=0.224 Sum_probs=101.8
Q ss_pred ccCCccccCCCCc--CeEEEeCCCcHHHHHHHHHhcCCCCCEEEEEcCCCcEEEeeccCcccCcchhHHHHHhhcChhhh
Q 016003 185 PALSIDSLGIIST--DVVAVDYHSPASLALEAISRSLFDQTSVAVVDSDGFLIGEISPSTLGCCDETVAAAITTLSAGDL 262 (397)
Q Consensus 185 ~~~ti~~L~~~~~--~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~is~~dl~~~~~~~~~~~~~ls~~Dl 262 (397)
...++++ +|++ +++++.+++++.+|++.|.++++ +++||+|++|+++|+ ++.+|+
T Consensus 9 ~~~~v~~--im~~~~~~~~v~~~~~~~~a~~~m~~~~~--~~~pVvd~~~~~~Gi-------------------vt~~dl 65 (157)
T 2emq_A 9 MQMTVKP--FLIPADKVAHVQPGNYLDHALLVLTKTGY--SAIPVLDTSYKLHGL-------------------ISMTMM 65 (157)
T ss_dssp -CCBSTT--TCEEGGGSCCBCTTSBHHHHHHHHHHSSS--SEEEEECTTCCEEEE-------------------EEHHHH
T ss_pred hhCcHHh--hccCCccceEECCCCcHHHHHHHHHHCCc--eEEEEEcCCCCEEEE-------------------eeHHHH
Confidence 3455665 7886 89999999999999999999999 999999999999999 456666
Q ss_pred hhhhccCCCCchhHHHHHHHhhhcchhhhhhhhccccCCCCCCCCCCCCCccchhhhccccCCCccccccchhhhhcCCc
Q 016003 263 MAYIDCGGPPEDLVRVVKERLKDKGLEGMLEHFDMSSSLMPYLSTSSSSDEESTATSKLTRSGKHSRSMSYSARMVRRAE 342 (397)
Q Consensus 263 ~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (397)
+.++..... .. . ..+ . ..+...+|..+
T Consensus 66 ~~~~~~~~~----------------~~-~-------------------------~~~---~--------~~~v~~~m~~~ 92 (157)
T 2emq_A 66 MDAILGLER----------------IE-F-------------------------ERL---E--------TMKVEEVMNRN 92 (157)
T ss_dssp HHHSBCSSS----------------BC-G-------------------------GGG---G--------TCBGGGTCBCC
T ss_pred HHHHhcccc----------------cc-h-------------------------HHh---c--------CCcHHHHhCCC
Confidence 653211000 00 0 000 0 00122457789
Q ss_pred cEEeCCCCcHHHHHHHHHHcCCcEEEEEcCCCcEEEEEehHHHHHHHHHHHh
Q 016003 343 AIVCHPTSSLMAVMIQAIAHRVTYVWVIEDDCTLTGIVTFSDLLKVFRKHLE 394 (397)
Q Consensus 343 ~it~~~~~sl~~v~~~m~~~~i~rl~VVd~~~~lvGvVt~~DIl~~l~~~~~ 394 (397)
+++|++++++.+++.+|.++++ +||||++|+++|+||.+||++++.+..+
T Consensus 93 ~~~v~~~~~l~~a~~~m~~~~~--l~Vvd~~g~~~Giit~~dil~~~~~~~~ 142 (157)
T 2emq_A 93 IPRLRLDDSLMKAVGLIVNHPF--VCVENDDGYFAGIFTRREVLKQLNKQLH 142 (157)
T ss_dssp CCEEETTSBHHHHHHHHHHSSE--EEEECSSSSEEEEEEHHHHHHHHHHTTC
T ss_pred CceecCCCcHHHHHHHHhhCCE--EEEEcCCCeEEEEEEHHHHHHHHHHHhh
Confidence 9999999999999999999998 9999988999999999999999987654
|
| >3k2v_A Putative D-arabinose 5-phosphate isomerase; KPSF-like protein, CBS domain, structural genomics, PSI-2, P structure initiative; HET: MSE CMK; 1.95A {Klebsiella pneumoniae subsp} PDB: 3fna_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=2.3e-16 Score=136.07 Aligned_cols=120 Identities=28% Similarity=0.381 Sum_probs=98.2
Q ss_pred cCCccccCCCCc--CeEEEeCCCcHHHHHHHHHhcCCCCCEEEEEcCCCcEEEeeccCcccCcchhHHHHHhhcChhhhh
Q 016003 186 ALSIDSLGIIST--DVVAVDYHSPASLALEAISRSLFDQTSVAVVDSDGFLIGEISPSTLGCCDETVAAAITTLSAGDLM 263 (397)
Q Consensus 186 ~~ti~~L~~~~~--~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~is~~dl~~~~~~~~~~~~~ls~~Dl~ 263 (397)
..++++ +|++ +++++.+++++.+|++.|.++++ +.+||+|++|+++|+ +|.+|++
T Consensus 27 ~~~v~d--im~~~~~~~~v~~~~~~~~a~~~m~~~~~--~~~~Vvd~~~~~~Gi-------------------vt~~dl~ 83 (149)
T 3k2v_A 27 LLRVND--IMHTGDEIPHVGLQATLRDALLEITRKNL--GMTAICDDDMNIIGI-------------------FTDGDLR 83 (149)
T ss_dssp TSBGGG--TSBCGGGSCEECTTCBHHHHHHHHHHHTS--SEEEEECTTCBEEEE-------------------EEHHHHH
T ss_pred ccCHHH--HhcCCCCCeEECCCCcHHHHHHHHHhCCC--cEEEEECCCCcEEEE-------------------ecHHHHH
Confidence 456776 7998 89999999999999999999999 999999999999999 5567776
Q ss_pred hhhccCCCCchhHHHHHHHhhhcchhhhhhhhccccCCCCCCCCCCCCCccchhhhccccCCCccccccchhhhhcCCcc
Q 016003 264 AYIDCGGPPEDLVRVVKERLKDKGLEGMLEHFDMSSSLMPYLSTSSSSDEESTATSKLTRSGKHSRSMSYSARMVRRAEA 343 (397)
Q Consensus 264 ~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (397)
..+..+ . .+ . ..+...+|..++
T Consensus 84 ~~~~~~------------------~------------~~--------------------~--------~~~v~~~m~~~~ 105 (149)
T 3k2v_A 84 RVFDTG------------------V------------DM--------------------R--------DASIADVMTRGG 105 (149)
T ss_dssp HHHCSS------------------S------------CC--------------------T--------TCBHHHHSEESC
T ss_pred HHHhcC------------------C------------Cc--------------------c--------cCcHHHHcCCCC
Confidence 533110 0 00 0 011224577889
Q ss_pred EEeCCCCcHHHHHHHHHHcCCcEEEEEcCCCcEEEEEehHHHHH
Q 016003 344 IVCHPTSSLMAVMIQAIAHRVTYVWVIEDDCTLTGIVTFSDLLK 387 (397)
Q Consensus 344 it~~~~~sl~~v~~~m~~~~i~rl~VVd~~~~lvGvVt~~DIl~ 387 (397)
++|++++++.+++.+|.+++++++||+|++ +++|+||..||++
T Consensus 106 ~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~-~~~Giit~~dil~ 148 (149)
T 3k2v_A 106 IRIRPGTLAVDALNLMQSRHITCVLVADGD-HLLGVVHMHDLLR 148 (149)
T ss_dssp CEECTTCBHHHHHHHHHHHTCSEEEEEETT-EEEEEEEHHHHTC
T ss_pred eEECCCCCHHHHHHHHHHcCCCEEEEecCC-EEEEEEEHHHhhc
Confidence 999999999999999999999999999986 9999999999986
|
| >3l2b_A Probable manganase-dependent inorganic pyrophosphatase; family II, CBS domain, bateman domain, AP4A, diadenosine polyphosphate, DRTGG; HET: B4P; 2.27A {Clostridium perfringens} PDB: 3l31_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=5.8e-16 Score=144.69 Aligned_cols=202 Identities=14% Similarity=0.099 Sum_probs=129.4
Q ss_pred ccchhhhhhcCCCCeEEEeCChhHHHHHHHHhhCCCceEEEEccCCCCCCCCCCCCCCCeEEEEEehhHHHHHHhhcCCC
Q 016003 6 LADEVSDLCLGKPALRALSISAAIADALSALKNSDESFISVWDCNCCSNHRKLGDACECQCVGKVCMVDVICYLCKDSNS 85 (397)
Q Consensus 6 ~~~~v~dl~~~k~~li~v~~~~tv~~Al~~L~~~~I~s~PV~d~~~~~~~~~~~~~~~~~~vGiv~~~Dil~~l~~~~~l 85 (397)
...+|+|+|. ++++++++++++.+|+++|.++++.++||+|. +++++|+++..|+++++......
T Consensus 5 ~~~~v~~im~--~~~~~v~~~~~~~~a~~~m~~~~~~~lpVvd~-------------~~~l~Giit~~di~~~~~~~~~~ 69 (245)
T 3l2b_A 5 VKLKVEDLEM--DKIAPLAPEVSLKMAWNIMRDKNLKSIPVADG-------------NNHLLGMLSTSNITATYMDIWDS 69 (245)
T ss_dssp CCCBGGGSCC--BCCCCBCTTCBHHHHHHHHHHTTCSEEEEECT-------------TCBEEEEEEHHHHHHHHHCCCCT
T ss_pred ccCcHHHhcC--CCCcEECCCCcHHHHHHHHHHcCCCEEEEEcC-------------CCEEEEEEEHHHHHHHHHHhhhh
Confidence 3678999994 56899999999999999999999999999996 36899999999999988642110
Q ss_pred CChhhhhcCC--------------------------------hhhhccCCCCCceEEeCCCCCHHHHHHHHh-cCCceEE
Q 016003 86 LSPSLALKQP--------------------------------VSVLLPQLLPPLVMHVEPSCSLLEAMDLML-GGAQNLV 132 (397)
Q Consensus 86 ~~~~~~~~~~--------------------------------V~~lm~~~~~~~~~~V~~~~sL~~al~~m~-~g~~r~~ 132 (397)
+.......+ ...++..-.++.++.+. . -.++...+. +|+.-+.
T Consensus 70 -~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~g~~~i~a~~~~~~~~~~~~~~ivIvg--d-r~~~~~~~i~~~~~~li 145 (245)
T 3l2b_A 70 -NILAKSATSLDNILDTLSAEAQNINEERKVFPGKVVVAAMQAESLKEFISEGDIAIAG--D-RAEIQAELIELKVSLLI 145 (245)
T ss_dssp -THHHHTTCCHHHHHHHTTCEEEECCTTCCCCCSCEEECCSCGGGGGGTCCTTCEEEEC--S-CHHHHHHHHHTTCSEEE
T ss_pred -hhhhhccCCHHHHHHHhCCEEEeccCCcceeeeeEEEEeCChHHHHhcCCCCCEEEEC--C-CHHHHHHHHHcCCCEEE
Confidence 000000111 11111111123344442 1 255666555 6777665
Q ss_pred EeccCcchhhhhhhcccccccccCCCCceeeeecHHHHHHHHHhccCCCCCCccCCccccCCCC-cCeEEEeCCCcHHHH
Q 016003 133 VPIKNRLSIKRKQQQKLSSSSLTNHNGREFCWLTQEDIIRFILSSISLFSPIPALSIDSLGIIS-TDVVAVDYHSPASLA 211 (397)
Q Consensus 133 V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IITq~DIi~~l~~~~~~l~~l~~~ti~~L~~~~-~~v~tv~~~~~~~~a 211 (397)
+.............. .......+.|..|......... ...++++ +|+ ++++++++++++.+|
T Consensus 146 it~~~~~~~~v~~~a---------~~~~~~~i~t~~d~~~~~~~~~------~~~~v~~--im~~~~~~~~~~~~~~~~~ 208 (245)
T 3l2b_A 146 VTGGHTPSKEIIELA---------KKNNITVITTPHDSFTASRLIV------QSLPVDY--VMTKDNLVAVSTDDLVEDV 208 (245)
T ss_dssp ECTTCCCCHHHHHHH---------HHHTCEEEECSSCHHHHHHHGG------GGSBHHH--HSBCTTCCCEETTSBHHHH
T ss_pred ECCCCCCCHHHHHHH---------HHcCCeEEEeCCChHHHHHHHh------cCCceee--EecCCccEEECCCCcHHHH
Confidence 543211100000000 0112233666666654432111 1345666 799 899999999999999
Q ss_pred HHHHHhcCCCCCEEEEEcCCCcEEEeeccCcccC
Q 016003 212 LEAISRSLFDQTSVAVVDSDGFLIGEISPSTLGC 245 (397)
Q Consensus 212 ~~~m~~~~i~~s~vpVVd~~g~lvG~is~~dl~~ 245 (397)
+++|.++++ +++||||++|+++|+||.+||.+
T Consensus 209 ~~~m~~~~~--~~~pVvd~~~~~~Giit~~dll~ 240 (245)
T 3l2b_A 209 KVTMSETRY--SNYPVIDENNKVVGSIARFHLIS 240 (245)
T ss_dssp HHHHHHHCC--SEEEEECTTCBEEEEEECC----
T ss_pred HHHHHhcCC--ceEEEEcCCCeEEEEEEHHHhhc
Confidence 999999999 99999999999999999888876
|
| >1yav_A Hypothetical protein BSU14130; cystathionine beta synthase (CBS) domain, structural genomics, protein structure initiative, PSI; 2.10A {Bacillus subtilis} SCOP: d.37.1.1 | Back alignment and structure |
|---|
Probab=99.67 E-value=1.8e-16 Score=138.00 Aligned_cols=134 Identities=19% Similarity=0.202 Sum_probs=103.5
Q ss_pred CCccCCccccCCCCc--CeEEEeCCCcHHHHHHHHHhcCCCCCEEEEEcCCCcEEEeeccCcccCcchhHHHHHhhcChh
Q 016003 183 PIPALSIDSLGIIST--DVVAVDYHSPASLALEAISRSLFDQTSVAVVDSDGFLIGEISPSTLGCCDETVAAAITTLSAG 260 (397)
Q Consensus 183 ~l~~~ti~~L~~~~~--~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~is~~dl~~~~~~~~~~~~~ls~~ 260 (397)
.+...++++ +|++ +++++.+++++.+|++.|.++++ +++||+|++|+++|+ ++.+
T Consensus 10 ~l~~~~v~~--im~~~~~~~~v~~~~~l~~a~~~m~~~~~--~~~pVvd~~~~lvGi-------------------vt~~ 66 (159)
T 1yav_A 10 QLLEATVGQ--FMIEADKVAHVQVGNNLEHALLVLTKTGY--TAIPVLDPSYRLHGL-------------------IGTN 66 (159)
T ss_dssp -CTTCBHHH--HSEEGGGSCCEETTCBHHHHHHHHHHHCC--SEEEEECTTCBEEEE-------------------EEHH
T ss_pred HHhHhhHHH--HhCCccceEEECCCCcHHHHHHHHHhCCC--cEEEEECCCCCEEEE-------------------eEHH
Confidence 344567766 6887 89999999999999999999999 999999999999999 4566
Q ss_pred hhhhhhccCCCCchhHHHHHHHhhhcchhhhhhhhccccCCCCCCCCCCCCCccchhhhccccCCCccccccchhhhhcC
Q 016003 261 DLMAYIDCGGPPEDLVRVVKERLKDKGLEGMLEHFDMSSSLMPYLSTSSSSDEESTATSKLTRSGKHSRSMSYSARMVRR 340 (397)
Q Consensus 261 Dl~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (397)
|++.++.... .+. . .. . ...+..++|.
T Consensus 67 dl~~~~~~~~----------------~~~-~-------------------------~~-----~------~~~~v~~~m~ 93 (159)
T 1yav_A 67 MIMNSIFGLE----------------RIE-F-------------------------EK-----L------DQITVEEVML 93 (159)
T ss_dssp HHHHHHBCSS----------------SBC-G-------------------------GG-----T------TTSBHHHHSB
T ss_pred HHHHHhhhhc----------------ccc-h-------------------------hh-----h------ccCCHHHhcC
Confidence 6665321100 000 0 00 0 0111234678
Q ss_pred CccEEeCCCCcHHHHHHHHHHcCCcEEEEEcCCCcEEEEEehHHHHHHHHHHHh
Q 016003 341 AEAIVCHPTSSLMAVMIQAIAHRVTYVWVIEDDCTLTGIVTFSDLLKVFRKHLE 394 (397)
Q Consensus 341 ~~~it~~~~~sl~~v~~~m~~~~i~rl~VVd~~~~lvGvVt~~DIl~~l~~~~~ 394 (397)
.++++|++++++.+++.+|.++++ +||+|++|+++|+||++||++++.+.+.
T Consensus 94 ~~~~~v~~~~~l~~a~~~m~~~~~--lpVvd~~g~~vGiit~~dil~~~~~~~~ 145 (159)
T 1yav_A 94 TDIPRLHINDPIMKGFGMVINNGF--VCVENDEQVFEGIFTRRVVLKELNKHIR 145 (159)
T ss_dssp CSCCEEETTSBHHHHHHHTTTCSE--EEEECTTCBEEEEEEHHHHHHHHHHHC-
T ss_pred CCCceEcCCCCHHHHHHHHHhCCE--EEEEeCCCeEEEEEEHHHHHHHHHHHHH
Confidence 899999999999999999999987 9999988999999999999999987654
|
| >1o50_A CBS domain-containing predicted protein TM0935; CBS-domain PAIR fold, structural genomics, joint center for structural genomics, JCSG; 1.87A {Thermotoga maritima} SCOP: d.37.1.1 | Back alignment and structure |
|---|
Probab=99.67 E-value=5e-16 Score=135.09 Aligned_cols=141 Identities=16% Similarity=0.168 Sum_probs=101.9
Q ss_pred cCCccccCCCCcCeEEEeCCCcHHHHHHHHHhcCCCCCE-EEEEcCCCcEEEeeccCcccCcchhHHHHHhhcChhhhhh
Q 016003 186 ALSIDSLGIISTDVVAVDYHSPASLALEAISRSLFDQTS-VAVVDSDGFLIGEISPSTLGCCDETVAAAITTLSAGDLMA 264 (397)
Q Consensus 186 ~~ti~~L~~~~~~v~tv~~~~~~~~a~~~m~~~~i~~s~-vpVVd~~g~lvG~is~~dl~~~~~~~~~~~~~ls~~Dl~~ 264 (397)
..++++ +|+++++++.+++++.+|++.|.++++ ++ +||+|++ +++|+|| .+|++.
T Consensus 15 ~~~v~~--im~~~~~~v~~~~tl~ea~~~m~~~~~--~~~~~Vvd~~-~~vGivt-------------------~~dl~~ 70 (157)
T 1o50_A 15 VKDVCK--LISLKPTVVEEDTPIEEIVDRILEDPV--TRTVYVARDN-KLVGMIP-------------------VMHLLK 70 (157)
T ss_dssp HHHHTT--SSCCCCEEECTTCBHHHHHHHHHHSTT--CCEEEEEETT-EEEEEEE-------------------HHHHHH
T ss_pred cccHhh--cccCCCceECCCCCHHHHHHHHHhCCC--CccEEEEECC-EEEEEEE-------------------HHHHHH
Confidence 344554 899999999999999999999999999 99 9999988 9999965 455544
Q ss_pred hhccCCCCchhHHHHHHHhhhcchhhhhhhhccccCCCCCCCCCCCCCccchhhhccccCCCccccccchhhhhcCCccE
Q 016003 265 YIDCGGPPEDLVRVVKERLKDKGLEGMLEHFDMSSSLMPYLSTSSSSDEESTATSKLTRSGKHSRSMSYSARMVRRAEAI 344 (397)
Q Consensus 265 ~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 344 (397)
.+.. .+ ...+... ..+.. ...........++|.. ++
T Consensus 71 ~~~~-------------~~-~~~~~~~-~~~~~----------------------------~~~~~~~~~v~~im~~-~~ 106 (157)
T 1o50_A 71 VSGF-------------HF-FGFIPKE-ELIRS----------------------------SMKRLIAKNASEIMLD-PV 106 (157)
T ss_dssp HHHH-------------HH-HCCCC------------------------------------CCCCCSSCBHHHHCBC-CC
T ss_pred HHhh-------------hH-HhhhccH-HHHHH----------------------------HHHHHcCCcHHHHcCC-Ce
Confidence 2110 00 0000000 00000 0000001223456788 99
Q ss_pred EeCCCCcHHHHHHHHHHcCCcEEEEEcCCCcEEEEEehHHHHHHHHHHHh
Q 016003 345 VCHPTSSLMAVMIQAIAHRVTYVWVIEDDCTLTGIVTFSDLLKVFRKHLE 394 (397)
Q Consensus 345 t~~~~~sl~~v~~~m~~~~i~rl~VVd~~~~lvGvVt~~DIl~~l~~~~~ 394 (397)
+|++++++.+++++|.+++++++||+|++|+++|+||+.||++++.++++
T Consensus 107 ~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~~vGiit~~dll~~l~~~~~ 156 (157)
T 1o50_A 107 YVHMDTPLEEALKLMIDNNIQEMPVVDEKGEIVGDLNSLEILLALWKGRE 156 (157)
T ss_dssp CBCTTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHHHSCC
T ss_pred EECCCCCHHHHHHHHHHCCCcEEEEEcCCCEEEEEEEHHHHHHHHHHhhc
Confidence 99999999999999999999999999988999999999999999987543
|
| >3ocm_A Putative membrane protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADP; 1.80A {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=99.67 E-value=9.6e-17 Score=142.95 Aligned_cols=122 Identities=21% Similarity=0.252 Sum_probs=99.5
Q ss_pred cCCccccCCCC--cCeEEEeCCCcHHHHHHHHHhcCCCCCEEEEEcCC-CcEEEeeccCcccCcchhHHHHHhhcChhhh
Q 016003 186 ALSIDSLGIIS--TDVVAVDYHSPASLALEAISRSLFDQTSVAVVDSD-GFLIGEISPSTLGCCDETVAAAITTLSAGDL 262 (397)
Q Consensus 186 ~~ti~~L~~~~--~~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~-g~lvG~is~~dl~~~~~~~~~~~~~ls~~Dl 262 (397)
..++++ +|+ ++++++.+++++.+|++.|.++++ +++||+|++ |+++|+ ++.+|+
T Consensus 35 ~~~v~d--iM~~~~~v~~v~~~~tv~ea~~~m~~~~~--~~~pVvd~~~~~lvGi-------------------vt~~Dl 91 (173)
T 3ocm_A 35 ERSIRS--IMTPRTDVSWVNIDDDAATIRQQLTAAPH--SFFPVCRGSLDEVVGI-------------------GRAKDL 91 (173)
T ss_dssp TSCSTT--TSEEGGGCCCEETTSCHHHHHHHHHHSSC--SEEEEESSSTTSEEEE-------------------EEHHHH
T ss_pred CCCHHH--hCCcHHHeEEEeCCCCHHHHHHHHHhCCC--CEEEEEeCCCCCEEEE-------------------EEHHHH
Confidence 455655 787 479999999999999999999999 999999987 899999 556777
Q ss_pred hhhhccCCCCchhHHHHHHHhhhcchhhhhhhhccccCCCCCCCCCCCCCccchhhhccccCCCccccccchhhhhcCCc
Q 016003 263 MAYIDCGGPPEDLVRVVKERLKDKGLEGMLEHFDMSSSLMPYLSTSSSSDEESTATSKLTRSGKHSRSMSYSARMVRRAE 342 (397)
Q Consensus 263 ~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (397)
+..... . . ... .. |..+
T Consensus 92 ~~~~~~-------------~-------------~---------------------------~~~--------v~--~~~~ 108 (173)
T 3ocm_A 92 VADLIT-------------E-------------G---------------------------RVR--------RN--RLRD 108 (173)
T ss_dssp HHHHHH-------------H-------------S---------------------------SCC--------GG--GSBC
T ss_pred HHHHhc-------------C-------------C---------------------------cch--------hH--hcCC
Confidence 652210 0 0 000 11 3467
Q ss_pred cEEeCCCCcHHHHHHHHHHcCCcEEEEEcCCCcEEEEEehHHHHHHHHHHH
Q 016003 343 AIVCHPTSSLMAVMIQAIAHRVTYVWVIEDDCTLTGIVTFSDLLKVFRKHL 393 (397)
Q Consensus 343 ~it~~~~~sl~~v~~~m~~~~i~rl~VVd~~~~lvGvVt~~DIl~~l~~~~ 393 (397)
++++++++++.+++.+|.+++++++||+|++|+++||||+.||++++...+
T Consensus 109 ~~~v~~~~~l~~al~~m~~~~~~~~~Vvde~g~lvGiIT~~Dil~~l~~~i 159 (173)
T 3ocm_A 109 PIIVHESIGILRLMDTLKRSRGQLVLVADEFGAIEGLVTPIDVFEAIAGEF 159 (173)
T ss_dssp CCEECGGGCHHHHHHHHHHSTTCCEEEECTTCCEEEEECHHHHHHHHHCCC
T ss_pred CeEECCCCcHHHHHHHHHHcCCeEEEEEeCCCCEEEEEeHHHHHHHHhCcC
Confidence 899999999999999999999999999999999999999999999998653
|
| >1vr9_A CBS domain protein/ACT domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE; 1.70A {Thermotoga maritima} SCOP: d.37.1.1 | Back alignment and structure |
|---|
Probab=99.66 E-value=5.5e-16 Score=142.45 Aligned_cols=114 Identities=17% Similarity=0.262 Sum_probs=96.7
Q ss_pred CCCcCeEEEeCCCcHHHHHHHHHhcCCCCCEEEEEcCCCcEEEeeccCcccCcchhHHHHHhhcChhhhhhhhccCCCCc
Q 016003 194 IISTDVVAVDYHSPASLALEAISRSLFDQTSVAVVDSDGFLIGEISPSTLGCCDETVAAAITTLSAGDLMAYIDCGGPPE 273 (397)
Q Consensus 194 ~~~~~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~is~~dl~~~~~~~~~~~~~ls~~Dl~~~~~~~~~~~ 273 (397)
+|.++++++.+++++.+|+++|.++++ +++||+|++|+++|+|| .+|++.....
T Consensus 18 ~~~~~~~~v~~~~tv~ea~~~m~~~~~--~~~pVvd~~~~l~Givt-------------------~~dl~~~~~~----- 71 (213)
T 1vr9_A 18 WVTQDFPMVEESATVRECLHRMRQYQT--NECIVKDREGHFRGVVN-------------------KEDLLDLDLD----- 71 (213)
T ss_dssp GCBSCSCEEETTCBHHHHHHHHHHTTS--SEEEEECTTSBEEEEEE-------------------GGGGTTSCTT-----
T ss_pred hhcCCCeEECCCCcHHHHHHHHHHCCC--CEEEEEcCCCEEEEEEE-------------------HHHHHhhcCC-----
Confidence 789999999999999999999999999 99999998899999965 4444431100
Q ss_pred hhHHHHHHHhhhcchhhhhhhhccccCCCCCCCCCCCCCccchhhhccccCCCccccccchhhhhcCCccEEeCCCCcHH
Q 016003 274 DLVRVVKERLKDKGLEGMLEHFDMSSSLMPYLSTSSSSDEESTATSKLTRSGKHSRSMSYSARMVRRAEAIVCHPTSSLM 353 (397)
Q Consensus 274 ~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~~~~sl~ 353 (397)
. . ..++|+.+++++++++++.
T Consensus 72 --------------------------~-------------------------~--------v~~im~~~~~~v~~~~~l~ 92 (213)
T 1vr9_A 72 --------------------------S-------------------------S--------VFNKVSLPDFFVHEEDNIT 92 (213)
T ss_dssp --------------------------S-------------------------B--------SGGGCBCTTCCEETTSBHH
T ss_pred --------------------------C-------------------------c--------HHHHccCCCEEECCCCcHH
Confidence 0 0 1124677899999999999
Q ss_pred HHHHHHHHcCCcEEEEEcCCCcEEEEEehHHHHHHHHHH
Q 016003 354 AVMIQAIAHRVTYVWVIEDDCTLTGIVTFSDLLKVFRKH 392 (397)
Q Consensus 354 ~v~~~m~~~~i~rl~VVd~~~~lvGvVt~~DIl~~l~~~ 392 (397)
+++++|.+++++++||+|++|+++|+||..||++++...
T Consensus 93 ~a~~~m~~~~~~~lpVvd~~g~lvGiit~~Dil~~~~~~ 131 (213)
T 1vr9_A 93 HALLLFLEHQEPYLPVVDEEMRLKGAVSLHDFLEALIEA 131 (213)
T ss_dssp HHHHHHHHCCCSEEEEECTTCBEEEEEEHHHHHHHHHHS
T ss_pred HHHHHHHHhCCCEEEEEcCCCEEEEEEEHHHHHHHHHHH
Confidence 999999999999999999989999999999999988653
|
| >3l2b_A Probable manganase-dependent inorganic pyrophosphatase; family II, CBS domain, bateman domain, AP4A, diadenosine polyphosphate, DRTGG; HET: B4P; 2.27A {Clostridium perfringens} PDB: 3l31_A* | Back alignment and structure |
|---|
Probab=99.66 E-value=5.6e-16 Score=144.78 Aligned_cols=57 Identities=14% Similarity=0.190 Sum_probs=46.7
Q ss_pred hhhhcC-CccEEeCCCCcHHHHHHHHHHcCCcEEEEEcCCCcEEEEEehHHHHHHHHH
Q 016003 335 ARMVRR-AEAIVCHPTSSLMAVMIQAIAHRVTYVWVIEDDCTLTGIVTFSDLLKVFRK 391 (397)
Q Consensus 335 ~~~~~~-~~~it~~~~~sl~~v~~~m~~~~i~rl~VVd~~~~lvGvVt~~DIl~~l~~ 391 (397)
..++|+ .+++++++++++.+++++|.+++++++||||++|+++|+||+.|++++..+
T Consensus 187 v~~im~~~~~~~~~~~~~~~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dll~~~~~ 244 (245)
T 3l2b_A 187 VDYVMTKDNLVAVSTDDLVEDVKVTMSETRYSNYPVIDENNKVVGSIARFHLISTHKK 244 (245)
T ss_dssp HHHHSBCTTCCCEETTSBHHHHHHHHHHHCCSEEEEECTTCBEEEEEECC--------
T ss_pred eeeEecCCccEEECCCCcHHHHHHHHHhcCCceEEEEcCCCeEEEEEEHHHhhchhhc
Confidence 456788 899999999999999999999999999999999999999999999987643
|
| >2pfi_A Chloride channel protein CLC-Ka; cystathionine beta synthetase (CBS) domains containing protein, transport protein; 1.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.66 E-value=5e-16 Score=135.10 Aligned_cols=130 Identities=10% Similarity=0.183 Sum_probs=98.2
Q ss_pred cCCccccCCCCcCeEEEeCCCcHHHHHHHHHhcCCCCCEEEEEcC--CCcEEEeeccCcccCcchhHHHHHhhcChhhhh
Q 016003 186 ALSIDSLGIISTDVVAVDYHSPASLALEAISRSLFDQTSVAVVDS--DGFLIGEISPSTLGCCDETVAAAITTLSAGDLM 263 (397)
Q Consensus 186 ~~ti~~L~~~~~~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~--~g~lvG~is~~dl~~~~~~~~~~~~~ls~~Dl~ 263 (397)
..++++ +|+++++++++++++.+|++.|.++++ +++||+|+ +|+++|+|| .+|++
T Consensus 12 ~~~v~d--im~~~~~~v~~~~~~~~a~~~~~~~~~--~~~pVvd~~~~~~~~Givt-------------------~~dl~ 68 (164)
T 2pfi_A 12 HVRVEH--FMNHSITTLAKDTPLEEVVKVVTSTDV--TEYPLVESTESQILVGIVQ-------------------RAQLV 68 (164)
T ss_dssp SCBHHH--HCBCCCCCEETTCBHHHHHHHHHTCCC--SEEEEESCTTTCBEEEEEE-------------------HHHHH
T ss_pred CCCHHH--HcCCCCeEECCCCcHHHHHHHHHhCCC--CceeEEecCCCCEEEEEEE-------------------HHHHH
Confidence 455665 799999999999999999999999999 99999997 789999954 56665
Q ss_pred hhhccCCCCchhHHHHHHHhhhcchhhhhhhhccccCCCCCCCCCCCCCccchhhhccccCCCccccccchhhhhcCCc-
Q 016003 264 AYIDCGGPPEDLVRVVKERLKDKGLEGMLEHFDMSSSLMPYLSTSSSSDEESTATSKLTRSGKHSRSMSYSARMVRRAE- 342 (397)
Q Consensus 264 ~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 342 (397)
.......+ .. .. . . ......+|..+
T Consensus 69 ~~~~~~~~------------------~~---~~-----~--------------------~--------~~~v~~~m~~~~ 94 (164)
T 2pfi_A 69 QALQAEPP------------------SR---AP-----G--------------------H--------QQCLQDILARGC 94 (164)
T ss_dssp HHHHC---------------------------------C--------------------C--------CCBHHHHHHTTC
T ss_pred HHHHhhcc------------------cc---CC-----c--------------------c--------cchhhhhhcccc
Confidence 43211000 00 00 0 0 00001122222
Q ss_pred -----cEEeCCCCcHHHHHHHHHHcCCcEEEEEcCCCcEEEEEehHHHHHHHHHHH
Q 016003 343 -----AIVCHPTSSLMAVMIQAIAHRVTYVWVIEDDCTLTGIVTFSDLLKVFRKHL 393 (397)
Q Consensus 343 -----~it~~~~~sl~~v~~~m~~~~i~rl~VVd~~~~lvGvVt~~DIl~~l~~~~ 393 (397)
+++|++++++.+++.+|.+++++++||+| +|+++||||..||++++.+..
T Consensus 95 ~~~~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd-~g~l~Giit~~dil~~~~~~~ 149 (164)
T 2pfi_A 95 PTEPVTLTLFSETTLHQAQNLFKLLNLQSLFVTS-RGRAVGCVSWVEMKKAISNLT 149 (164)
T ss_dssp CCBCCCCCEETTCBHHHHHHHHHHTTCSEEEEEE-TTEEEEEEEHHHHHHHHHHHH
T ss_pred cccCCceEECCCCcHHHHHHHHHHhCCCEEEEEE-CCEEEEEEEHHHHHHHHHhhh
Confidence 79999999999999999999999999999 689999999999999998764
|
| >3i8n_A Uncharacterized protein VP2912; APC64273.1, vibrio parahaemolyticus RIMD 2210633, structural genomics, PSI-2; 2.15A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=99.65 E-value=5.9e-16 Score=130.37 Aligned_cols=126 Identities=17% Similarity=0.167 Sum_probs=104.9
Q ss_pred ccccchhhhhhcCCCCeEEEeCChhHHHHHHHHhhCCCceEEEEccCCCCCCCCCCCCCCCeEEEEEehhHHHHHHhhcC
Q 016003 4 SLLADEVSDLCLGKPALRALSISAAIADALSALKNSDESFISVWDCNCCSNHRKLGDACECQCVGKVCMVDVICYLCKDS 83 (397)
Q Consensus 4 ~~~~~~v~dl~~~k~~li~v~~~~tv~~Al~~L~~~~I~s~PV~d~~~~~~~~~~~~~~~~~~vGiv~~~Dil~~l~~~~ 83 (397)
.|...+|+|+|...++++++++++|+.+|++.|.++++.++||+|.+ .++++|+|+..|++.++.+..
T Consensus 2 ~l~~~~v~~iM~~~~~v~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~------------~~~~~Givt~~dl~~~~~~~~ 69 (130)
T 3i8n_A 2 NAQDVPVTQVMTPRPVVFRVDATMTINEFLDKHKDTPFSRPLVYSEQ------------KDNIIGFVHRLELFKMQQSGS 69 (130)
T ss_dssp -----CCTTTSCCBCCCCEEETTSBHHHHHHHTTTCSCSCCEEESSS------------TTCEEEECCHHHHHHHHHTTT
T ss_pred CcCcCCHhhCCCcHHHEEEEcCCCCHHHHHHHHHhCCCCEEEEEeCC------------CCcEEEEEEHHHHHHHHhcCC
Confidence 46788999999766778999999999999999999999999999963 268999999999999876531
Q ss_pred CCCChhhhhcCChhhhccCCCCCceEEeCCCCCHHHHHHHHh-cCCceEEEeccCcchhhhhhhcccccccccCCCCcee
Q 016003 84 NSLSPSLALKQPVSVLLPQLLPPLVMHVEPSCSLLEAMDLML-GGAQNLVVPIKNRLSIKRKQQQKLSSSSLTNHNGREF 162 (397)
Q Consensus 84 ~l~~~~~~~~~~V~~lm~~~~~~~~~~V~~~~sL~~al~~m~-~g~~r~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (397)
...+++++|. . ++++.+++++.+|++.|. +++++++|++++ |+.+
T Consensus 70 --------~~~~v~~~m~-~----~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~---------------------g~~v 115 (130)
T 3i8n_A 70 --------GQKQLGAVMR-P----IQVVLNNTALPKVFDQMMTHRLQLALVVDEY---------------------GTVL 115 (130)
T ss_dssp --------TTSBHHHHSE-E----CCEEETTSCHHHHHHHHHHHTCCEEEEECTT---------------------SCEE
T ss_pred --------CcCCHHHHhc-C----CcCcCCCCcHHHHHHHHHHcCCeEEEEEcCC---------------------CCEE
Confidence 2568999993 2 689999999999999999 799999988532 4678
Q ss_pred eeecHHHHHHHHH
Q 016003 163 CWLTQEDIIRFIL 175 (397)
Q Consensus 163 ~IITq~DIi~~l~ 175 (397)
|+||..||++.+.
T Consensus 116 Givt~~dil~~l~ 128 (130)
T 3i8n_A 116 GLVTLEDIFEHLV 128 (130)
T ss_dssp EEEEHHHHHHHHH
T ss_pred EEEEHHHHHHHHc
Confidence 9999999999985
|
| >3lv9_A Putative transporter; CBS domain, PSI, MCSG, structural genomics, protein structur initiative, midwest center for structural genomics; 2.40A {Clostridium difficile 630} | Back alignment and structure |
|---|
Probab=99.64 E-value=1.9e-15 Score=129.99 Aligned_cols=126 Identities=16% Similarity=0.172 Sum_probs=108.7
Q ss_pred ccccchhhhhhcCCCCeEEEeCChhHHHHHHHHhhCCCceEEEEccCCCCCCCCCCCCCCCeEEEEEehhHHHHHHhhcC
Q 016003 4 SLLADEVSDLCLGKPALRALSISAAIADALSALKNSDESFISVWDCNCCSNHRKLGDACECQCVGKVCMVDVICYLCKDS 83 (397)
Q Consensus 4 ~~~~~~v~dl~~~k~~li~v~~~~tv~~Al~~L~~~~I~s~PV~d~~~~~~~~~~~~~~~~~~vGiv~~~Dil~~l~~~~ 83 (397)
-|...+|+|+|....+++++++++|+.+|++.|.++++.++||+|.+ .++++|+|+..|++.++....
T Consensus 19 ~l~~~~v~diM~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~------------~~~lvGivt~~dl~~~~~~~~ 86 (148)
T 3lv9_A 19 EFEEKKIREIMVPRTDMVCIYESDSEEKILAILKEEGVTRYPVCRKN------------KDDILGFVHIRDLYNQKINEN 86 (148)
T ss_dssp GGGTCBGGGTSEETTTCCCEETTCCHHHHHHHHHHSCCSEEEEESSS------------TTSEEEEEEHHHHHHHHHHHS
T ss_pred ccCCCCHHHccccHHHeEEECCCCCHHHHHHHHHHCCCCEEEEEcCC------------CCcEEEEEEHHHHHHHHhcCC
Confidence 35678899999654489999999999999999999999999999963 158999999999999876531
Q ss_pred CCCChhhhhcCChhhhccCCCCCceEEeCCCCCHHHHHHHHh-cCCceEEEeccCcchhhhhhhcccccccccCCCCcee
Q 016003 84 NSLSPSLALKQPVSVLLPQLLPPLVMHVEPSCSLLEAMDLML-GGAQNLVVPIKNRLSIKRKQQQKLSSSSLTNHNGREF 162 (397)
Q Consensus 84 ~l~~~~~~~~~~V~~lm~~~~~~~~~~V~~~~sL~~al~~m~-~g~~r~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (397)
+.+++++| .. ++++.+++++.+|++.|. +++++++|++++ |+.+
T Consensus 87 ---------~~~v~~~m-~~----~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~---------------------g~~~ 131 (148)
T 3lv9_A 87 ---------KIELEEIL-RD----IIYISENLTIDKALERIRKEKLQLAIVVDEY---------------------GGTS 131 (148)
T ss_dssp ---------CCCGGGTC-BC----CEEEETTSBHHHHHHHHHHHTCSEEEEECTT---------------------SSEE
T ss_pred ---------CccHHHhc-CC----CeEECCCCCHHHHHHHHHhcCCeEEEEEeCC---------------------CCEE
Confidence 56899999 54 789999999999999999 799999998632 4678
Q ss_pred eeecHHHHHHHHHh
Q 016003 163 CWLTQEDIIRFILS 176 (397)
Q Consensus 163 ~IITq~DIi~~l~~ 176 (397)
|+||..||++.+..
T Consensus 132 Giit~~dil~~l~~ 145 (148)
T 3lv9_A 132 GVVTIEDILEEIVG 145 (148)
T ss_dssp EEEEHHHHHHHHHH
T ss_pred EEEEHHHHHHHHhC
Confidence 99999999999864
|
| >3hf7_A Uncharacterized CBS-domain protein; CSB-domain PAIR, AMP, PSI, MCSG, STR genomics, midwest center for structural genomics; HET: AMP; 2.75A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.64 E-value=8.2e-16 Score=129.86 Aligned_cols=125 Identities=13% Similarity=0.105 Sum_probs=105.0
Q ss_pred chhhhhhcCCCCeEEEeCChhHHHHHHHHhhCCCceEEEEccCCCCCCCCCCCCCCCeEEEEEehhHHHHHHhhcCCCCC
Q 016003 8 DEVSDLCLGKPALRALSISAAIADALSALKNSDESFISVWDCNCCSNHRKLGDACECQCVGKVCMVDVICYLCKDSNSLS 87 (397)
Q Consensus 8 ~~v~dl~~~k~~li~v~~~~tv~~Al~~L~~~~I~s~PV~d~~~~~~~~~~~~~~~~~~vGiv~~~Dil~~l~~~~~l~~ 87 (397)
.+|+|+|...++++++++++|+.+|++.|.+++++++||++.+ +++++|+|+..|++.++.++...
T Consensus 2 ~~v~~iM~~~~~~~~v~~~~~v~~a~~~m~~~~~~~~pVv~~~------------~~~lvGivt~~dl~~~~~~~~~~-- 67 (130)
T 3hf7_A 2 VSVNDIMVPRNEIVGIDINDDWKSIVRQLTHSPHGRIVLYRDS------------LDDAISMLRVREAYRLMTEKKEF-- 67 (130)
T ss_dssp CBHHHHSEEGGGCCEEETTSCHHHHHHHHHTCSSSEEEEESSS------------GGGEEEEEEHHHHHHHHTSSSCC--
T ss_pred cCHHHhCccHHHEEEEcCCCCHHHHHHHHHHCCCCeEEEEcCC------------CCcEEEEEEHHHHHHHHhccCcc--
Confidence 5799999755679999999999999999999999999999742 36899999999999988653211
Q ss_pred hhhhhcCChhhhccCCCCCceEEeCCCCCHHHHHHHHh-cCCceEEEeccCcchhhhhhhcccccccccCCCCceeeeec
Q 016003 88 PSLALKQPVSVLLPQLLPPLVMHVEPSCSLLEAMDLML-GGAQNLVVPIKNRLSIKRKQQQKLSSSSLTNHNGREFCWLT 166 (397)
Q Consensus 88 ~~~~~~~~V~~lm~~~~~~~~~~V~~~~sL~~al~~m~-~g~~r~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IIT 166 (397)
...+++++| .. ++++.+++++.+|++.|. +++++++|.+++ |+.+||||
T Consensus 68 ----~~~~v~~~m-~~----~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~---------------------g~lvGiit 117 (130)
T 3hf7_A 68 ----TKEIMLRAA-DE----IYFVPEGTPLSTQLVKFQRNKKKVGLVVDEY---------------------GDIQGLVT 117 (130)
T ss_dssp ----CHHHHHHHS-BC----CCEEETTCBHHHHHHHHHHHCCCEEEEECTT---------------------SCEEEEEE
T ss_pred ----chhhHHHhc-cC----CeEeCCCCcHHHHHHHHHhcCCeEEEEEcCC---------------------CCEEEEee
Confidence 135789999 33 688999999999999999 799999987532 46789999
Q ss_pred HHHHHHHHHh
Q 016003 167 QEDIIRFILS 176 (397)
Q Consensus 167 q~DIi~~l~~ 176 (397)
..||++.+.+
T Consensus 118 ~~Dil~~l~g 127 (130)
T 3hf7_A 118 VEDILEEIVG 127 (130)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHHhC
Confidence 9999999863
|
| >2d4z_A Chloride channel protein; CLC chloride channel cytoplasmic domain, CBS domains, ION CH regulatory subunit, transport protein; 3.10A {Torpedo marmorata} SCOP: d.37.1.1 | Back alignment and structure |
|---|
Probab=99.64 E-value=5.6e-16 Score=146.38 Aligned_cols=55 Identities=11% Similarity=0.071 Sum_probs=50.2
Q ss_pred hcCCccEEeCCCCcHHHHHHHHHHcCCcEEEEEcCCCcEEEEEehHHHHHHHHHHH
Q 016003 338 VRRAEAIVCHPTSSLMAVMIQAIAHRVTYVWVIEDDCTLTGIVTFSDLLKVFRKHL 393 (397)
Q Consensus 338 ~~~~~~it~~~~~sl~~v~~~m~~~~i~rl~VVd~~~~lvGvVt~~DIl~~l~~~~ 393 (397)
.|...++|+.++++|.+|+.+|...+++|+||++. |+|+||||+.||++++....
T Consensus 194 ~md~sP~tv~~~tsL~~v~~LF~~lglr~l~V~~~-GrLVGIVTrkDl~kai~~~~ 248 (250)
T 2d4z_A 194 RIDQSPFQLVEGTSLQKTHTLFSLLGLDRAYVTSM-GKLVGVVALAEIQAAIEGSY 248 (250)
T ss_dssp CEECCSCCBCTTCBHHHHHHHHHHHTCSEEEEEET-TEEEEEEEHHHHHHHHHC--
T ss_pred cccCCCeEECCCCcHHHHHHHHHHhCCeEEEEEEC-CEEEEEEEHHHHHHHHHHHh
Confidence 47889999999999999999999999999999985 89999999999999997543
|
| >3lqn_A CBS domain protein; csgid, structural genomics, unknown function, center for structural genomics of infectious diseases; 1.80A {Bacillus anthracis} SCOP: d.37.1.0 | Back alignment and structure |
|---|
Probab=99.63 E-value=9e-16 Score=132.00 Aligned_cols=135 Identities=16% Similarity=0.116 Sum_probs=110.9
Q ss_pred ccccchhhhhhcCCCCeEEEeCChhHHHHHHHHhhCCCceEEEEccCCCCCCCCCCCCCCCeEEEEEehhHHHHHHhhcC
Q 016003 4 SLLADEVSDLCLGKPALRALSISAAIADALSALKNSDESFISVWDCNCCSNHRKLGDACECQCVGKVCMVDVICYLCKDS 83 (397)
Q Consensus 4 ~~~~~~v~dl~~~k~~li~v~~~~tv~~Al~~L~~~~I~s~PV~d~~~~~~~~~~~~~~~~~~vGiv~~~Dil~~l~~~~ 83 (397)
.|.+++|+|+|..+.+++++++++|+.+|++.|.++++.++||+|. +++++|+|+..||+.++....
T Consensus 11 ~l~~~~v~~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~pVvd~-------------~~~~~Givt~~dl~~~~~~~~ 77 (150)
T 3lqn_A 11 EFQQIFVKDLMISSEKVAHVQIGNGLEHALLVLVKSGYSAIPVLDP-------------MYKLHGLISTAMILDGILGLE 77 (150)
T ss_dssp HHHHCBHHHHSEEGGGSCCBCTTSBHHHHHHHHHHHTCSEEEEECT-------------TCBEEEEEEHHHHHHHTBCSS
T ss_pred hhhcCChhhcccCCCceEEECCCCcHHHHHHHHHHcCCcEEEEECC-------------CCCEEEEEEHHHHHHHHHhhc
Confidence 4678899999975557999999999999999999999999999996 368999999999999986532
Q ss_pred CCCChhhhhcCChhhhccCCCCCceEEeCCCCCHHHHHHHHh-cCCceEEEeccCcchhhhhhhcccccccccCCCCcee
Q 016003 84 NSLSPSLALKQPVSVLLPQLLPPLVMHVEPSCSLLEAMDLML-GGAQNLVVPIKNRLSIKRKQQQKLSSSSLTNHNGREF 162 (397)
Q Consensus 84 ~l~~~~~~~~~~V~~lm~~~~~~~~~~V~~~~sL~~al~~m~-~g~~r~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (397)
.. ........+|+++|... ++++.+++++.+|++.|. +++ ++|+++ +|+.+
T Consensus 78 ~~-~~~~~~~~~v~~~m~~~----~~~v~~~~~l~~a~~~~~~~~~--l~Vvd~---------------------~g~~~ 129 (150)
T 3lqn_A 78 RI-EFERLEEMKVEQVMKQD----IPVLKLEDSFAKALEMTIDHPF--ICAVNE---------------------DGYFE 129 (150)
T ss_dssp SB-CGGGGGGCBGGGTCBSS----CCEEETTCBHHHHHHHHHHCSE--EEEECT---------------------TCBEE
T ss_pred cc-chhHHhcCCHHHHhcCC----CceeCCCCCHHHHHHHHHhCCE--EEEECC---------------------CCcEE
Confidence 21 12334578999999754 899999999999999999 564 777652 25688
Q ss_pred eeecHHHHHHHHHhccC
Q 016003 163 CWLTQEDIIRFILSSIS 179 (397)
Q Consensus 163 ~IITq~DIi~~l~~~~~ 179 (397)
|+||+.||++++.+...
T Consensus 130 Giit~~dil~~l~~~~~ 146 (150)
T 3lqn_A 130 GILTRRAILKLLNKKVR 146 (150)
T ss_dssp EEEEHHHHHHHHHHHC-
T ss_pred EEEEHHHHHHHHHHHhH
Confidence 99999999999987543
|
| >4fry_A Putative signal-transduction protein with CBS DOM; CBS domain,ssgcid, structural genomics, niaid; HET: NAD AMP; 2.10A {Burkholderia ambifaria} | Back alignment and structure |
|---|
Probab=99.63 E-value=9.8e-16 Score=132.91 Aligned_cols=117 Identities=16% Similarity=0.171 Sum_probs=94.2
Q ss_pred cCeEEEeCCCcHHHHHHHHHhcCCCCCEEEEEcCCCcEEEeeccCcccCcchhHHHHHhhcChhhhhhhhccCCCCchhH
Q 016003 197 TDVVAVDYHSPASLALEAISRSLFDQTSVAVVDSDGFLIGEISPSTLGCCDETVAAAITTLSAGDLMAYIDCGGPPEDLV 276 (397)
Q Consensus 197 ~~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~is~~dl~~~~~~~~~~~~~ls~~Dl~~~~~~~~~~~~l~ 276 (397)
++++++.+++++.+|++.|.++++ +.+||+| +|+++|+ ++.+|++..+...
T Consensus 21 ~~~~~v~~~~~~~~a~~~~~~~~~--~~~~V~~-~~~~~Gi-------------------vt~~dl~~~~~~~------- 71 (157)
T 4fry_A 21 RTIYTVTKNDFVYDAIKLMAEKGI--GALLVVD-GDDIAGI-------------------VTERDYARKVVLQ------- 71 (157)
T ss_dssp CCCCEEETTSBHHHHHHHHHHHTC--SEEEEES-SSSEEEE-------------------EEHHHHHHHSGGG-------
T ss_pred CCCeEECCCCcHHHHHHHHHHcCC--CEEEEee-CCEEEEE-------------------EEHHHHHHHHHhc-------
Confidence 568999999999999999999999 9999965 7899999 5567766522100
Q ss_pred HHHHHHhhhcchhhhhhhhccccCCCCCCCCCCCCCccchhhhccccCCCccccccchhhhhcCCccEEeCCCCcHHHHH
Q 016003 277 RVVKERLKDKGLEGMLEHFDMSSSLMPYLSTSSSSDEESTATSKLTRSGKHSRSMSYSARMVRRAEAIVCHPTSSLMAVM 356 (397)
Q Consensus 277 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~~~~sl~~v~ 356 (397)
. . .. . ..+..++|..++++|++++++.+++
T Consensus 72 ----------~--------~----~~----------------------~------~~~v~~~m~~~~~~v~~~~~l~~~~ 101 (157)
T 4fry_A 72 ----------E--------R----SS----------------------K------ATRVEEIMTAKVRYVEPSQSTDECM 101 (157)
T ss_dssp ----------T--------C----CS----------------------S------SCBHHHHSBSSCCCBCTTSBHHHHH
T ss_pred ----------c--------C----Cc----------------------c------ccCHHHHcCCCCcEECCCCcHHHHH
Confidence 0 0 00 0 0112346788999999999999999
Q ss_pred HHHHHcCCcEEEEEcCCCcEEEEEehHHHHHHHHHHH
Q 016003 357 IQAIAHRVTYVWVIEDDCTLTGIVTFSDLLKVFRKHL 393 (397)
Q Consensus 357 ~~m~~~~i~rl~VVd~~~~lvGvVt~~DIl~~l~~~~ 393 (397)
++|.+++++++||+| +|+++|+||+.||++++....
T Consensus 102 ~~m~~~~~~~lpVvd-~g~~~Giit~~dil~~l~~~~ 137 (157)
T 4fry_A 102 ALMTEHRMRHLPVLD-GGKLIGLISIGDLVKSVIADQ 137 (157)
T ss_dssp HHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHHHHTTC
T ss_pred HHHHHcCCCEEEEEE-CCEEEEEEEHHHHHHHHHHHH
Confidence 999999999999999 699999999999999998653
|
| >2j9l_A Chloride channel protein 5; ION channel, ION transport, voltage-gated; HET: ATP; 2.30A {Homo sapiens} SCOP: d.37.1.1 PDB: 2ja3_A* | Back alignment and structure |
|---|
Probab=99.62 E-value=1.3e-15 Score=135.19 Aligned_cols=149 Identities=16% Similarity=0.146 Sum_probs=102.1
Q ss_pred cCCccccCCCCcC----eEEE--eCCCcHHHHHHHHHhcCCCCCEEEEE--cCCCcEEEeeccCcccCcchhHHHHHhhc
Q 016003 186 ALSIDSLGIISTD----VVAV--DYHSPASLALEAISRSLFDQTSVAVV--DSDGFLIGEISPSTLGCCDETVAAAITTL 257 (397)
Q Consensus 186 ~~ti~~L~~~~~~----v~tv--~~~~~~~~a~~~m~~~~i~~s~vpVV--d~~g~lvG~is~~dl~~~~~~~~~~~~~l 257 (397)
..++++ +|++. ++++ .+++++.+|+++|.++++ +++||+ |++|+++|+||
T Consensus 10 ~~~v~d--im~~~~~~~~~~v~~~~~~~~~~a~~~~~~~~~--~~~pVv~~d~~~~lvGiit------------------ 67 (185)
T 2j9l_A 10 KTLAMD--VMKPRRNDPLLTVLTQDSMTVEDVETIISETTY--SGFPVVVSRESQRLVGFVL------------------ 67 (185)
T ss_dssp CCBHHH--HSBSCTTSCCCCCEESSCEEHHHHHHHHHHCCC--SEEEEESCTTTCBEEEEEE------------------
T ss_pred cCcHHH--HhcccccCceEEEecCCCccHHHHHHHHHhcCC--CceeEEEECCCCeEEEEEE------------------
Confidence 455665 68776 8888 999999999999999999 999999 78899999965
Q ss_pred ChhhhhhhhccCCCCchhHHHHHHHhhhcch-hhhhhhhccccCCCCCCCCCCCCCccchhhhccccCCCccccccchhh
Q 016003 258 SAGDLMAYIDCGGPPEDLVRVVKERLKDKGL-EGMLEHFDMSSSLMPYLSTSSSSDEESTATSKLTRSGKHSRSMSYSAR 336 (397)
Q Consensus 258 s~~Dl~~~~~~~~~~~~l~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (397)
.+|++...... .....++ ......+... . .+ ............
T Consensus 68 -~~dl~~~~~~~------------~~~~~~~~~~~~~~~~~~---~--------------~~------~~~~~~~~~~v~ 111 (185)
T 2j9l_A 68 -RRDLIISIENA------------RKKQDGVVSTSIIYFTEH---S--------------PP------LPPYTPPTLKLR 111 (185)
T ss_dssp -HHHHHHHHHHH------------HTSCSCCCTTCEEECSSS---C--------------CC------CCTTCCCCEECG
T ss_pred -HHHHHHHHHhh------------cccCCCccccceeecccC---C--------------cc------cccccccCccHH
Confidence 45554422100 0000000 0000000000 0 00 000000112234
Q ss_pred hhcCCccEEeCCCCcHHHHHHHHHHcCCcEEEEEcCCCcEEEEEehHHHHHHHHHHH
Q 016003 337 MVRRAEAIVCHPTSSLMAVMIQAIAHRVTYVWVIEDDCTLTGIVTFSDLLKVFRKHL 393 (397)
Q Consensus 337 ~~~~~~~it~~~~~sl~~v~~~m~~~~i~rl~VVd~~~~lvGvVt~~DIl~~l~~~~ 393 (397)
.+|..++++|++++++.+++.+|.+++++++||+| +|+++||||+.||++++.+..
T Consensus 112 ~im~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd-~g~~vGiit~~dll~~l~~~~ 167 (185)
T 2j9l_A 112 NILDLSPFTVTDLTPMEIVVDIFRKLGLRQCLVTH-NGRLLGIITKKDVLKHIAQMA 167 (185)
T ss_dssp GGEESSCCEEETTSBHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHHHHHHC
T ss_pred HhhCcCCeEeCCCCCHHHHHHHHHhCCCcEEEEEE-CCEEEEEEEHHHHHHHHHHhh
Confidence 56788999999999999999999999999999999 689999999999999998753
|
| >3lhh_A CBS domain protein; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG, cell membrane; HET: MSE AMP; 2.10A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=99.62 E-value=2.7e-15 Score=132.88 Aligned_cols=126 Identities=17% Similarity=0.163 Sum_probs=105.9
Q ss_pred ccccchhhhhhcCCCCeEEEeCChhHHHHHHHHhhCCCceEEEEccCCCCCCCCCCCCCCCeEEEEEehhHHHHHHhhcC
Q 016003 4 SLLADEVSDLCLGKPALRALSISAAIADALSALKNSDESFISVWDCNCCSNHRKLGDACECQCVGKVCMVDVICYLCKDS 83 (397)
Q Consensus 4 ~~~~~~v~dl~~~k~~li~v~~~~tv~~Al~~L~~~~I~s~PV~d~~~~~~~~~~~~~~~~~~vGiv~~~Dil~~l~~~~ 83 (397)
-|...+|+|+|...++++++++++|+.+|++.|.+++++++||+|.+ .++++|+|+..||+.++....
T Consensus 38 ~l~~~~v~diM~~~~~~~~v~~~~~v~~a~~~m~~~~~~~~pVvd~~------------~~~lvGivt~~dl~~~~~~~~ 105 (172)
T 3lhh_A 38 RLDERTISSLMVPRSDIVFLDLNLPLDANLRTVMQSPHSRFPVCRNN------------VDDMVGIISAKQLLSESIAGE 105 (172)
T ss_dssp -----CTTTTSEEGGGCCCEETTSCHHHHHHHHHTCCCSEEEEESSS------------TTSEEEEEEHHHHHHHHHTTC
T ss_pred ccCCCCHHHhCccHHHeEEEcCCCCHHHHHHHHHhCCCCEEEEEeCC------------CCeEEEEEEHHHHHHHHhhcC
Confidence 35678899999755789999999999999999999999999999963 168999999999999876521
Q ss_pred CCCChhhhhcCChhhhccCCCCCceEEeCCCCCHHHHHHHHh-cCCceEEEeccCcchhhhhhhcccccccccCCCCcee
Q 016003 84 NSLSPSLALKQPVSVLLPQLLPPLVMHVEPSCSLLEAMDLML-GGAQNLVVPIKNRLSIKRKQQQKLSSSSLTNHNGREF 162 (397)
Q Consensus 84 ~l~~~~~~~~~~V~~lm~~~~~~~~~~V~~~~sL~~al~~m~-~g~~r~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (397)
+.+|+++| .. ++++.+++++.+|++.|. +++++++|++++ |+.+
T Consensus 106 ---------~~~v~~im-~~----~~~v~~~~~l~~a~~~m~~~~~~~~pVvd~~---------------------g~lv 150 (172)
T 3lhh_A 106 ---------RLELVDLV-KN----CNFVPNSLSGMELLEHFRTTGSQMVFVVDEY---------------------GDLK 150 (172)
T ss_dssp ---------CCCGGGGC-BC----CEEEETTCCHHHHHHHHHHHTCSEEEEECTT---------------------SCEE
T ss_pred ---------cccHHHHh-cC----CeEeCCCCCHHHHHHHHHHcCCeEEEEEeCC---------------------CCEE
Confidence 56899999 55 799999999999999999 799999988632 4678
Q ss_pred eeecHHHHHHHHHh
Q 016003 163 CWLTQEDIIRFILS 176 (397)
Q Consensus 163 ~IITq~DIi~~l~~ 176 (397)
||||..||++.+.+
T Consensus 151 Giit~~Dil~~l~~ 164 (172)
T 3lhh_A 151 GLVTLQDMMDALTG 164 (172)
T ss_dssp EEEEHHHHHHHHHT
T ss_pred EEeeHHHHHHHHhC
Confidence 99999999999874
|
| >3oco_A Hemolysin-like protein containing CBS domains; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.20A {Oenococcus oeni} | Back alignment and structure |
|---|
Probab=99.61 E-value=2e-15 Score=130.85 Aligned_cols=125 Identities=18% Similarity=0.222 Sum_probs=107.5
Q ss_pred cccchhhhhhcCCCCeEEEeCChhHHHHHHHHhhCCCceEEEE-ccCCCCCCCCCCCCCCCeEEEEEehhHHHHHHhhcC
Q 016003 5 LLADEVSDLCLGKPALRALSISAAIADALSALKNSDESFISVW-DCNCCSNHRKLGDACECQCVGKVCMVDVICYLCKDS 83 (397)
Q Consensus 5 ~~~~~v~dl~~~k~~li~v~~~~tv~~Al~~L~~~~I~s~PV~-d~~~~~~~~~~~~~~~~~~vGiv~~~Dil~~l~~~~ 83 (397)
|...+|+|+|....+++++++++|+.+|++.|.++++.++||+ +.+ +++++|+|+..||+.++....
T Consensus 17 l~~~~v~~iM~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVv~d~~------------~~~lvGivt~~dl~~~~~~~~ 84 (153)
T 3oco_A 17 MNDKVASDVMVDRTSMSVVDVDETIADALLLYLEEQYSRFPVTADND------------KDKIIGYAYNYDIVRQARIDD 84 (153)
T ss_dssp HHHCBHHHHSEEGGGCCCEETTSBHHHHHHHHHHHCCSEEEEEETTE------------EEEEEEEEEHHHHHHHHHHHT
T ss_pred cCCCEeeeEecchhheEEEcCCCCHHHHHHHHHhCCCCEEEEEECCC------------CCcEEEEEEHHHHHhHHhcCC
Confidence 4567899999643479999999999999999999999999999 532 369999999999999876531
Q ss_pred CCCChhhhhcCChhhhccCCCCCceEEeCCCCCHHHHHHHHh-cCCceEEEeccCcchhhhhhhcccccccccCCCCcee
Q 016003 84 NSLSPSLALKQPVSVLLPQLLPPLVMHVEPSCSLLEAMDLML-GGAQNLVVPIKNRLSIKRKQQQKLSSSSLTNHNGREF 162 (397)
Q Consensus 84 ~l~~~~~~~~~~V~~lm~~~~~~~~~~V~~~~sL~~al~~m~-~g~~r~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (397)
+.+|+++| .. ++++.+++++.+|++.|. +++++++|++++ |+.+
T Consensus 85 ---------~~~v~~~m-~~----~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~~---------------------g~~v 129 (153)
T 3oco_A 85 ---------KAKISTIM-RD----IVSVPENMKVPDVMEEMSAHRVPMAIVIDEY---------------------GGTS 129 (153)
T ss_dssp ---------TSBGGGTC-BC----CEEEETTSBHHHHHHHHHHTTCSCEEEECTT---------------------SCEE
T ss_pred ---------CCcHHHHh-CC----CeEECCCCCHHHHHHHHHHcCCcEEEEEeCC---------------------CCEE
Confidence 56899999 54 899999999999999999 799999998632 4688
Q ss_pred eeecHHHHHHHHHh
Q 016003 163 CWLTQEDIIRFILS 176 (397)
Q Consensus 163 ~IITq~DIi~~l~~ 176 (397)
||||..||++.+..
T Consensus 130 Givt~~dil~~l~~ 143 (153)
T 3oco_A 130 GIITDKDVYEELFG 143 (153)
T ss_dssp EEECHHHHHHHHHC
T ss_pred EEeeHHHHHHHHhc
Confidence 99999999999874
|
| >2ef7_A Hypothetical protein ST2348; CBS-domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.10A {Sulfolobus tokodaii} SCOP: d.37.1.1 | Back alignment and structure |
|---|
Probab=99.61 E-value=3.9e-15 Score=125.20 Aligned_cols=128 Identities=16% Similarity=0.180 Sum_probs=107.8
Q ss_pred cccchhhhhhcCCCCeEEEeCChhHHHHHHHHhhCCCceEEEEccCCCCCCCCCCCCCCCeEEEEEehhHHHHHHhhcCC
Q 016003 5 LLADEVSDLCLGKPALRALSISAAIADALSALKNSDESFISVWDCNCCSNHRKLGDACECQCVGKVCMVDVICYLCKDSN 84 (397)
Q Consensus 5 ~~~~~v~dl~~~k~~li~v~~~~tv~~Al~~L~~~~I~s~PV~d~~~~~~~~~~~~~~~~~~vGiv~~~Dil~~l~~~~~ 84 (397)
|.+.+|+|+|. ++++++++++|+.+|++.|.++++..+||+| + ++++|+|+..|++.++..+.
T Consensus 1 l~~~~v~~im~--~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd-~-------------~~~~Givt~~dl~~~~~~~~- 63 (133)
T 2ef7_A 1 MEEEIVKEYMK--TQVISVTKDAKLNDIAKVMTEKNIGSVIVVD-G-------------NKPVGIITERDIVKAIGKGK- 63 (133)
T ss_dssp CCCCBGGGTSB--CSCCEEETTCBHHHHHHHHHHHTCSEEEEEE-T-------------TEEEEEEEHHHHHHHHHTTC-
T ss_pred CCcccHHHhcc--CCCEEECCCCcHHHHHHHHHhcCCCEEEEEE-C-------------CEEEEEEcHHHHHHHHhcCC-
Confidence 45788999994 5689999999999999999999999999999 4 58999999999998876532
Q ss_pred CCChhhhhcCChhhhccCCCCCceEEeCCCCCHHHHHHHHh-cCCceEEEeccCcchhhhhhhcccccccccCCCCceee
Q 016003 85 SLSPSLALKQPVSVLLPQLLPPLVMHVEPSCSLLEAMDLML-GGAQNLVVPIKNRLSIKRKQQQKLSSSSLTNHNGREFC 163 (397)
Q Consensus 85 l~~~~~~~~~~V~~lm~~~~~~~~~~V~~~~sL~~al~~m~-~g~~r~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (397)
....+++++|... ++++.+++++.+|++.|. ++.++++|++++ |+.+|
T Consensus 64 ------~~~~~v~~~~~~~----~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~---------------------g~~~G 112 (133)
T 2ef7_A 64 ------SLETKAEEFMTAS----LITIREDSPITGALALMRQFNIRHLPVVDDK---------------------GNLKG 112 (133)
T ss_dssp ------CTTCBGGGTSEEC----CCCEETTSBHHHHHHHHHHHTCSEEEEECTT---------------------SCEEE
T ss_pred ------CcccCHHHHcCCC----CEEECCCCCHHHHHHHHHHcCCCEEEEECCC---------------------CeEEE
Confidence 1247899999654 789999999999999999 799999988532 46789
Q ss_pred eecHHHHHHHHHhccCC
Q 016003 164 WLTQEDIIRFILSSISL 180 (397)
Q Consensus 164 IITq~DIi~~l~~~~~~ 180 (397)
+||..||++++.+....
T Consensus 113 iit~~dll~~~~~~~~~ 129 (133)
T 2ef7_A 113 IISIRDITRAIDDMFET 129 (133)
T ss_dssp EEEHHHHHHHHHHHC--
T ss_pred EEEHHHHHHHHHHHHHH
Confidence 99999999999876443
|
| >2oux_A Magnesium transporter; 10001B, structural genomics, PSI-2, P structure initiative, nysgxrc; 2.16A {Enterococcus faecalis} SCOP: a.118.26.1 d.37.1.1 | Back alignment and structure |
|---|
Probab=99.61 E-value=3.3e-15 Score=143.56 Aligned_cols=124 Identities=23% Similarity=0.220 Sum_probs=103.1
Q ss_pred CCccCCccccCCCCcCeEEEeCCCcHHHHHHHHHhc-----CCCCCEEEEEcCCCcEEEeeccCcccCcchhHHHHHhhc
Q 016003 183 PIPALSIDSLGIISTDVVAVDYHSPASLALEAISRS-----LFDQTSVAVVDSDGFLIGEISPSTLGCCDETVAAAITTL 257 (397)
Q Consensus 183 ~l~~~ti~~L~~~~~~v~tv~~~~~~~~a~~~m~~~-----~i~~s~vpVVd~~g~lvG~is~~dl~~~~~~~~~~~~~l 257 (397)
.....++++ +|+++++++.+++++.+|++.|.++ ++ +.+||||++|+++|+||
T Consensus 133 ~~~~~~v~~--iM~~~~~~v~~~~tv~ea~~~~~~~~~~~~~~--~~~pVvd~~~~lvGivt------------------ 190 (286)
T 2oux_A 133 HYEDETAGA--IMTTEFVSIVANQTVRSAMYVLKNQADMAETI--YYVYVVDQENHLVGVIS------------------ 190 (286)
T ss_dssp TSCTTBHHH--HCBSCCCEECSSSBHHHHHHHHHHHCSSCSCC--SEEEEECTTCBEEEEEE------------------
T ss_pred cCChHHHHH--hCCCCceEECCCCcHHHHHHHHHHcccCccce--eEEEEEcCCCeEEEEEE------------------
Confidence 345667766 7999999999999999999999988 77 89999999999999955
Q ss_pred ChhhhhhhhccCCCCchhHHHHHHHhhhcchhhhhhhhccccCCCCCCCCCCCCCccchhhhccccCCCccccccchhhh
Q 016003 258 SAGDLMAYIDCGGPPEDLVRVVKERLKDKGLEGMLEHFDMSSSLMPYLSTSSSSDEESTATSKLTRSGKHSRSMSYSARM 337 (397)
Q Consensus 258 s~~Dl~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (397)
.+|++.... . .....
T Consensus 191 -~~dll~~~~--------------------------------------------------------~--------~~v~~ 205 (286)
T 2oux_A 191 -LRDLIVNDD--------------------------------------------------------D--------TLIAD 205 (286)
T ss_dssp -HHHHTTSCT--------------------------------------------------------T--------SBHHH
T ss_pred -HHHHHcCCC--------------------------------------------------------C--------CcHHH
Confidence 555543100 0 00123
Q ss_pred hcCCccEEeCCCCcHHHHHHHHHHcCCcEEEEEcCCCcEEEEEehHHHHHHHHHHH
Q 016003 338 VRRAEAIVCHPTSSLMAVMIQAIAHRVTYVWVIEDDCTLTGIVTFSDLLKVFRKHL 393 (397)
Q Consensus 338 ~~~~~~it~~~~~sl~~v~~~m~~~~i~rl~VVd~~~~lvGvVt~~DIl~~l~~~~ 393 (397)
+|..++++|++++++.+++.+|.+++++++||||++|+++|+||..||++++.++.
T Consensus 206 im~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVVd~~g~lvGiIT~~Dil~~i~~e~ 261 (286)
T 2oux_A 206 ILNERVISVHVGDDQEDVAQTIRDYDFLAVPVTDYDDHLLGIVTVDDIIDVIDDEA 261 (286)
T ss_dssp HSBSCCCCEETTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHHHHHHHHH
T ss_pred HcCCCCeeecCCCCHHHHHHHHHHcCCcEEEEEcCCCeEEEEEEHHHHHHHHHHHh
Confidence 57778999999999999999999999999999999999999999999999998764
|
| >3jtf_A Magnesium and cobalt efflux protein; CBS domain, CORC, AMP, structural genomics, PSI-2, protein S initiative; HET: MSE AMP; 2.00A {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=99.61 E-value=3.4e-15 Score=125.63 Aligned_cols=123 Identities=15% Similarity=0.222 Sum_probs=104.5
Q ss_pred ccchhhhhhcCCCCeEEEeCChhHHHHHHHHhhCCCceEEEEccCCCCCCCCCCCCCCCeEEEEEehhHHHHHHhhcCCC
Q 016003 6 LADEVSDLCLGKPALRALSISAAIADALSALKNSDESFISVWDCNCCSNHRKLGDACECQCVGKVCMVDVICYLCKDSNS 85 (397)
Q Consensus 6 ~~~~v~dl~~~k~~li~v~~~~tv~~Al~~L~~~~I~s~PV~d~~~~~~~~~~~~~~~~~~vGiv~~~Dil~~l~~~~~l 85 (397)
.+.+|+|+|...++++++++++|+.+|++.|.++++.++||+|.+ .++++|+|+..|++.++..
T Consensus 3 ~~~~v~diM~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~------------~~~~~Givt~~dl~~~~~~---- 66 (129)
T 3jtf_A 3 AERTVADIMVPRSRMDLLDISQPLPQLLATIIETAHSRFPVYEDD------------RDNIIGILLAKDLLRYMLE---- 66 (129)
T ss_dssp -CCBHHHHCEEGGGCCCEETTSCHHHHHHHHHHSCCSEEEEESSS------------TTCEEEEEEGGGGGGGGTC----
T ss_pred CCCCHHHhCccHHHeEEECCCCCHHHHHHHHHHcCCCEEEEEcCC------------CCcEEEEEEHHHHHhHhcc----
Confidence 467899999765779999999999999999999999999999963 2689999999999987642
Q ss_pred CChhhhhcCChhhhccCCCCCceEEeCCCCCHHHHHHHHh-cCCceEEEeccCcchhhhhhhcccccccccCCCCceeee
Q 016003 86 LSPSLALKQPVSVLLPQLLPPLVMHVEPSCSLLEAMDLML-GGAQNLVVPIKNRLSIKRKQQQKLSSSSLTNHNGREFCW 164 (397)
Q Consensus 86 ~~~~~~~~~~V~~lm~~~~~~~~~~V~~~~sL~~al~~m~-~g~~r~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I 164 (397)
.+.+++++|.. ++++.+++++.+|++.|. ++.++++|++++ |+.+|+
T Consensus 67 ------~~~~v~~~m~~-----~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~---------------------g~~~Gi 114 (129)
T 3jtf_A 67 ------PALDIRSLVRP-----AVFIPEVKRLNVLLREFRASRNHLAIVIDEH---------------------GGISGL 114 (129)
T ss_dssp ------TTSCGGGGCBC-----CCEEETTCBHHHHHHHHHTSSCCEEEEECC----------------------CCEEEE
T ss_pred ------CCcCHHHHhCC-----CeEeCCCCcHHHHHHHHHhcCCeEEEEEeCC---------------------CCEEEE
Confidence 14578999842 689999999999999999 789999988632 467899
Q ss_pred ecHHHHHHHHHh
Q 016003 165 LTQEDIIRFILS 176 (397)
Q Consensus 165 ITq~DIi~~l~~ 176 (397)
||..||++.+..
T Consensus 115 it~~Dil~~l~g 126 (129)
T 3jtf_A 115 VTMEDVLEQIVG 126 (129)
T ss_dssp EEHHHHHHHHHH
T ss_pred EEHHHHHHHHhC
Confidence 999999999864
|
| >3nqr_A Magnesium and cobalt efflux protein CORC; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: AMP; 2.00A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.60 E-value=1.8e-15 Score=126.88 Aligned_cols=123 Identities=16% Similarity=0.181 Sum_probs=102.8
Q ss_pred cchhhhhhcCCCCeEEEeCChhHHHHHHHHhhCCCceEEEEccCCCCCCCCCCCCCCCeEEEEEehhHHHHHHhhcCCCC
Q 016003 7 ADEVSDLCLGKPALRALSISAAIADALSALKNSDESFISVWDCNCCSNHRKLGDACECQCVGKVCMVDVICYLCKDSNSL 86 (397)
Q Consensus 7 ~~~v~dl~~~k~~li~v~~~~tv~~Al~~L~~~~I~s~PV~d~~~~~~~~~~~~~~~~~~vGiv~~~Dil~~l~~~~~l~ 86 (397)
+.+|+|+|....+++++++++|+.+|++.|.++++.++||+|.+ .++++|+|+..|++.++....
T Consensus 2 ~~~v~diM~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~------------~~~~vGivt~~dl~~~~~~~~--- 66 (127)
T 3nqr_A 2 DQRVRDIMIPRSQMITLKRNQTLDECLDVIIESAHSRFPVISED------------KDHIEGILMAKDLLPFMRSDA--- 66 (127)
T ss_dssp -CBHHHHSEEGGGCCCEETTCCHHHHHHHHHHHCCSEEEEESSS------------TTCEEEEEEGGGGGGGGSTTC---
T ss_pred CcCHHHhcccHHHeEEEcCCCCHHHHHHHHHhCCCCEEEEEcCC------------CCcEEEEEEHHHHHHHHhccC---
Confidence 46899999654559999999999999999999999999999963 268999999999998875421
Q ss_pred ChhhhhcCChhhhccCCCCCceEEeCCCCCHHHHHHHHh-cCCceEEEeccCcchhhhhhhcccccccccCCCCceeeee
Q 016003 87 SPSLALKQPVSVLLPQLLPPLVMHVEPSCSLLEAMDLML-GGAQNLVVPIKNRLSIKRKQQQKLSSSSLTNHNGREFCWL 165 (397)
Q Consensus 87 ~~~~~~~~~V~~lm~~~~~~~~~~V~~~~sL~~al~~m~-~g~~r~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~II 165 (397)
.+.+++++|.. ++++.+++++.+|++.|. +++++++|++++ |+.+|+|
T Consensus 67 -----~~~~v~~~m~~-----~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~---------------------g~~~Gii 115 (127)
T 3nqr_A 67 -----EAFSMDKVLRT-----AVVVPESKRVDRMLKEFRSQRYHMAIVIDEF---------------------GGVSGLV 115 (127)
T ss_dssp -----CCCCHHHHCBC-----CCEEETTCBHHHHHHHHHHTTCCEEEEECTT---------------------SCEEEEE
T ss_pred -----CCCCHHHHcCC-----CeEECCCCcHHHHHHHHHhcCCeEEEEEeCC---------------------CCEEEEE
Confidence 25689999932 578999999999999999 799999998632 4688999
Q ss_pred cHHHHHHHHH
Q 016003 166 TQEDIIRFIL 175 (397)
Q Consensus 166 Tq~DIi~~l~ 175 (397)
|+.||++.+.
T Consensus 116 t~~dll~~l~ 125 (127)
T 3nqr_A 116 TIEDILELIV 125 (127)
T ss_dssp EHHHHHHHC-
T ss_pred EHHHHHHHHh
Confidence 9999999864
|
| >3kpb_A Uncharacterized protein MJ0100; CBS domain, S-adenosylmethionine, conformational change, unknown function; HET: SAM; 1.60A {Methanocaldococcus jannaschii} SCOP: d.37.1.0 PDB: 3kpd_A* 3kpc_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=5.2e-15 Score=122.43 Aligned_cols=119 Identities=17% Similarity=0.130 Sum_probs=103.1
Q ss_pred chhhhhhcCCCCeEEEeCChhHHHHHHHHhhCCCceEEEEccCCCCCCCCCCCCCCCeEEEEEehhHHHHHHhhcCCCCC
Q 016003 8 DEVSDLCLGKPALRALSISAAIADALSALKNSDESFISVWDCNCCSNHRKLGDACECQCVGKVCMVDVICYLCKDSNSLS 87 (397)
Q Consensus 8 ~~v~dl~~~k~~li~v~~~~tv~~Al~~L~~~~I~s~PV~d~~~~~~~~~~~~~~~~~~vGiv~~~Dil~~l~~~~~l~~ 87 (397)
++|+|+|. ++++++++++|+.+|++.|.++++..+||+|. +++++|+|+..|++.++...
T Consensus 1 ~~v~~im~--~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~-------------~~~~~G~vt~~dl~~~~~~~----- 60 (122)
T 3kpb_A 1 TLVKDILS--KPPITAHSNISIMEAAKILIKHNINHLPIVDE-------------HGKLVGIITSWDIAKALAQN----- 60 (122)
T ss_dssp CBHHHHCC--SCCCCEETTSBHHHHHHHHHHHTCSCEEEECT-------------TSBEEEEECHHHHHHHHHTT-----
T ss_pred CchHHhhC--CCCEEeCCCCcHHHHHHHHHHcCCCeEEEECC-------------CCCEEEEEEHHHHHHHHHhc-----
Confidence 57899994 57899999999999999999999999999996 36899999999999988652
Q ss_pred hhhhhcCChhhhccCCCCCceEEeCCCCCHHHHHHHHh-cCCceEEEeccCcchhhhhhhcccccccccCCCCceeeeec
Q 016003 88 PSLALKQPVSVLLPQLLPPLVMHVEPSCSLLEAMDLML-GGAQNLVVPIKNRLSIKRKQQQKLSSSSLTNHNGREFCWLT 166 (397)
Q Consensus 88 ~~~~~~~~V~~lm~~~~~~~~~~V~~~~sL~~al~~m~-~g~~r~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IIT 166 (397)
..+++++|... ++++.+++++.++++.|. ++.++++|.+++ ++.+|+||
T Consensus 61 -----~~~v~~~~~~~----~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~---------------------g~~~Givt 110 (122)
T 3kpb_A 61 -----KKTIEEIMTRN----VITAHEDEPVDHVAIKMSKYNISGVPVVDDY---------------------RRVVGIVT 110 (122)
T ss_dssp -----CCBGGGTSBSS----CCCEETTSBHHHHHHHHHHHTCSEEEEECTT---------------------CBEEEEEE
T ss_pred -----ccCHHHHhcCC----CeEECCCCCHHHHHHHHHHhCCCeEEEECCC---------------------CCEEEEEe
Confidence 23799999754 889999999999999999 799999998632 46789999
Q ss_pred HHHHHHHHHh
Q 016003 167 QEDIIRFILS 176 (397)
Q Consensus 167 q~DIi~~l~~ 176 (397)
..||++++.+
T Consensus 111 ~~dl~~~l~~ 120 (122)
T 3kpb_A 111 SEDISRLFGG 120 (122)
T ss_dssp HHHHHHHHC-
T ss_pred HHHHHHHhhc
Confidence 9999999854
|
| >3fv6_A YQZB protein; CBS domain dimer, metabolism regulator, central glycolytic G regulator, transcription; 1.95A {Bacillus subtilis} PDB: 3fwr_A* 3fws_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=6.9e-15 Score=128.21 Aligned_cols=133 Identities=14% Similarity=0.137 Sum_probs=109.1
Q ss_pred cccccchhhhhhcCCCCeEEEeCChhHHHHHHHHhhCCCceEEEEccCCCCCCCCCCCCCCCeEEEEEehhHHHHHHhhc
Q 016003 3 VSLLADEVSDLCLGKPALRALSISAAIADALSALKNSDESFISVWDCNCCSNHRKLGDACECQCVGKVCMVDVICYLCKD 82 (397)
Q Consensus 3 ~~~~~~~v~dl~~~k~~li~v~~~~tv~~Al~~L~~~~I~s~PV~d~~~~~~~~~~~~~~~~~~vGiv~~~Dil~~l~~~ 82 (397)
..|..++|+|+|. ++ +++++++|+.+|++.|.++++..+||+|.+ ++++|+|+..||+.++...
T Consensus 12 ~~l~~~~v~~im~--~~-~~v~~~~~~~~a~~~m~~~~~~~~~Vvd~~-------------~~~~Givt~~dl~~~~~~~ 75 (159)
T 3fv6_A 12 DKLKKLQVKDFQS--IP-VVIHENVSVYDAICTMFLEDVGTLFVVDRD-------------AVLVGVLSRKDLLRASIGQ 75 (159)
T ss_dssp HHHTTCBGGGSCB--CC-CEEETTSBHHHHHHHHHHHTCSEEEEECTT-------------SCEEEEEEHHHHHHHHTSC
T ss_pred HHHhhCCHHHHcC--CC-EEECCCCcHHHHHHHHHHCCCCEEEEEcCC-------------CcEEEEEeHHHHHHHhhcc
Confidence 3567889999995 33 599999999999999999999999999963 6899999999999987543
Q ss_pred CCCCChhhhhcCChhhhccCCCCCceEEeCCCCCHHHHHHHHh-cCCceEEEeccCcchhhhhhhcccccccccCCCCce
Q 016003 83 SNSLSPSLALKQPVSVLLPQLLPPLVMHVEPSCSLLEAMDLML-GGAQNLVVPIKNRLSIKRKQQQKLSSSSLTNHNGRE 161 (397)
Q Consensus 83 ~~l~~~~~~~~~~V~~lm~~~~~~~~~~V~~~~sL~~al~~m~-~g~~r~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (397)
. .....+|+++|... .+++++.++++|.+|++.|. +++++++|++++.. +.+.
T Consensus 76 ~------~~~~~~v~~~m~~~--~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~------------------~~~~ 129 (159)
T 3fv6_A 76 Q------ELTSVPVHIIMTRM--PNITVCRREDYVMDIAKHLIEKQIDALPVIKDTDK------------------GFEV 129 (159)
T ss_dssp S------CTTTCBGGGTSEET--TSCCCBCTTSBHHHHHHHHHHHTCSEEEEEEECSS------------------SEEE
T ss_pred C------cccCcCHHHHHcCC--CCcEEECCCCCHHHHHHHHHHcCCcEEEEEeCCCc------------------ceeE
Confidence 2 22357899999751 23889999999999999999 79999999864210 0067
Q ss_pred eeeecHHHHHHHHHhc
Q 016003 162 FCWLTQEDIIRFILSS 177 (397)
Q Consensus 162 ~~IITq~DIi~~l~~~ 177 (397)
+|+||+.||++++.+-
T Consensus 130 vGiit~~dil~~l~~~ 145 (159)
T 3fv6_A 130 IGRVTKTNMTKILVSL 145 (159)
T ss_dssp EEEEEHHHHHHHHHHH
T ss_pred EEEEEHHHHHHHHHHH
Confidence 8999999999999874
|
| >2p9m_A Hypothetical protein MJ0922; structural genomics, collaboratory for structural genomics, secsg; 2.59A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} | Back alignment and structure |
|---|
Probab=99.59 E-value=6.7e-15 Score=124.39 Aligned_cols=129 Identities=22% Similarity=0.274 Sum_probs=106.5
Q ss_pred CccccccchhhhhhcCCCCeEEEeCChhHHHHHHHHhhCCCceEEEEccCCCCCCCCCCCCCCCeEEEEEehhHH-HHHH
Q 016003 1 MAVSLLADEVSDLCLGKPALRALSISAAIADALSALKNSDESFISVWDCNCCSNHRKLGDACECQCVGKVCMVDV-ICYL 79 (397)
Q Consensus 1 ~~~~~~~~~v~dl~~~k~~li~v~~~~tv~~Al~~L~~~~I~s~PV~d~~~~~~~~~~~~~~~~~~vGiv~~~Di-l~~l 79 (397)
|-.+|.+.+|+++|. ++++++++++|+.+|++.|.++++..+||+|. +++++|+|+..|+ +.++
T Consensus 1 ~~~~l~~~~v~~im~--~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~-------------~~~~~Givt~~dl~~~~~ 65 (138)
T 2p9m_A 1 MIDTLKNIKVKDVMT--KNVITAKRHEGVVEAFEKMLKYKISSLPVIDD-------------ENKVIGIVTTTDIGYNLI 65 (138)
T ss_dssp ----CTTCBGGGTSB--CSCCCEETTSBHHHHHHHHHHHTCCEEEEECT-------------TCBEEEEEEHHHHHHHHT
T ss_pred CccccccCCHHHhhc--CCceEECCCCcHHHHHHHHHHCCCcEEEEECC-------------CCeEEEEEEHHHHHHHHH
Confidence 345678999999994 57899999999999999999999999999996 3689999999999 8877
Q ss_pred hhcCCCCChhhhhcCChhhhccCCCCCceEEeCCCCCHHHHHHHHh-cC-----CceEEEeccCcchhhhhhhccccccc
Q 016003 80 CKDSNSLSPSLALKQPVSVLLPQLLPPLVMHVEPSCSLLEAMDLML-GG-----AQNLVVPIKNRLSIKRKQQQKLSSSS 153 (397)
Q Consensus 80 ~~~~~l~~~~~~~~~~V~~lm~~~~~~~~~~V~~~~sL~~al~~m~-~g-----~~r~~V~~~~~~~~~~~~~~~~~~~~ 153 (397)
.+. ...+.+++++|... ++++.+++++.++++.|. ++ +++++|.+++
T Consensus 66 ~~~-------~~~~~~v~~~m~~~----~~~v~~~~~l~~~~~~~~~~~~~~~~~~~l~Vvd~~---------------- 118 (138)
T 2p9m_A 66 RDK-------YTLETTIGDVMTKD----VITIHEDASILEAIKKMDISGKKEEIINQLPVVDKN---------------- 118 (138)
T ss_dssp TTC-------CCSSCBHHHHSCSS----CCCEETTSBHHHHHHHHTCC-----CCCEEEEECTT----------------
T ss_pred hhc-------ccCCcCHHHHhCCC----cEEECCCCCHHHHHHHHHhcCCccccccEEEEECCC----------------
Confidence 642 12357899999754 889999999999999999 68 8899887532
Q ss_pred ccCCCCceeeeecHHHHHHHHHh
Q 016003 154 LTNHNGREFCWLTQEDIIRFILS 176 (397)
Q Consensus 154 ~~~~~~~~~~IITq~DIi~~l~~ 176 (397)
++.+|+||..|+++++.+
T Consensus 119 -----g~~~Giit~~dll~~~~~ 136 (138)
T 2p9m_A 119 -----NKLVGIISDGDIIRTISK 136 (138)
T ss_dssp -----SBEEEEEEHHHHHHHHHH
T ss_pred -----CeEEEEEEHHHHHHHHHh
Confidence 467899999999999865
|
| >3fhm_A Uncharacterized protein ATU1752; CBS domain, prokaryotic, bound nucleotide, AMP, NADH, struct genomics, PSI-2; HET: AMP NAI; 2.70A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.59 E-value=4.3e-15 Score=130.29 Aligned_cols=130 Identities=19% Similarity=0.233 Sum_probs=110.8
Q ss_pred ccccchhhhhhcCC-CCeEEEeCChhHHHHHHHHhhCCCceEEEEccCCCCCCCCCCCCCCCeEEEEEehhHHHHHHhhc
Q 016003 4 SLLADEVSDLCLGK-PALRALSISAAIADALSALKNSDESFISVWDCNCCSNHRKLGDACECQCVGKVCMVDVICYLCKD 82 (397)
Q Consensus 4 ~~~~~~v~dl~~~k-~~li~v~~~~tv~~Al~~L~~~~I~s~PV~d~~~~~~~~~~~~~~~~~~vGiv~~~Dil~~l~~~ 82 (397)
-|..++|+|+|..+ .+++++++++|+.+|++.|.++++..+||+|. +++++|+|+..||+.++...
T Consensus 20 ~l~~~~v~dim~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~-------------~~~~~Givt~~dl~~~~~~~ 86 (165)
T 3fhm_A 20 QGMATFVKDLLDRKGRDVVTVGPDVSIGEAAGTLHAHKIGAVVVTDA-------------DGVVLGIFTERDLVKAVAGQ 86 (165)
T ss_dssp SSSSCBHHHHHHHHCSCCCEECTTSBHHHHHHHHHHHTCSEEEEECT-------------TSCEEEEEEHHHHHHHHHHH
T ss_pred hhhhcCHHHHhccCCCCCeEECCCCCHHHHHHHHHHcCCCEEEEEcC-------------CCeEEEEEEHHHHHHHHHhc
Confidence 35678999999653 46899999999999999999999999999996 36899999999999988752
Q ss_pred CCCCChhhhhcCChhhhccCCCCCceEEeCCCCCHHHHHHHHh-cCCceEEEeccCcchhhhhhhcccccccccCCCCce
Q 016003 83 SNSLSPSLALKQPVSVLLPQLLPPLVMHVEPSCSLLEAMDLML-GGAQNLVVPIKNRLSIKRKQQQKLSSSSLTNHNGRE 161 (397)
Q Consensus 83 ~~l~~~~~~~~~~V~~lm~~~~~~~~~~V~~~~sL~~al~~m~-~g~~r~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (397)
. ......+|+++|... ++++.++++|.+|++.|. +++++++|+++ ++.
T Consensus 87 ~-----~~~~~~~v~~~m~~~----~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~----------------------g~~ 135 (165)
T 3fhm_A 87 G-----AASLQQSVSVAMTKN----VVRCQHNSTTDQLMEIMTGGRFRHVPVEEN----------------------GRL 135 (165)
T ss_dssp G-----GGGGTSBGGGTSBSS----CCCBCTTCBHHHHHHHHHHHTCSEEEEEET----------------------TEE
T ss_pred C-----CccccCCHHHHhcCC----CeEECCCCcHHHHHHHHHHcCCCEEEEEEC----------------------CEE
Confidence 1 124467899999754 889999999999999999 79999999863 357
Q ss_pred eeeecHHHHHHHHHhc
Q 016003 162 FCWLTQEDIIRFILSS 177 (397)
Q Consensus 162 ~~IITq~DIi~~l~~~ 177 (397)
+|+||..||++++.+.
T Consensus 136 ~Giit~~dil~~~~~~ 151 (165)
T 3fhm_A 136 AGIISIGDVVKARIGE 151 (165)
T ss_dssp EEEEEHHHHHHHTTCC
T ss_pred EEEEEHHHHHHHHHHH
Confidence 8999999999998643
|
| >3lfr_A Putative metal ION transporter; CBS, AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 1.53A {Pseudomonas syringae} | Back alignment and structure |
|---|
Probab=99.58 E-value=2.4e-15 Score=127.84 Aligned_cols=125 Identities=17% Similarity=0.129 Sum_probs=104.4
Q ss_pred cchhhhhhcCCCCeEEEeCChhHHHHHHHHhhCCCceEEEEccCCCCCCCCCCCCCCCeEEEEEehhHHHHHHhhcCCCC
Q 016003 7 ADEVSDLCLGKPALRALSISAAIADALSALKNSDESFISVWDCNCCSNHRKLGDACECQCVGKVCMVDVICYLCKDSNSL 86 (397)
Q Consensus 7 ~~~v~dl~~~k~~li~v~~~~tv~~Al~~L~~~~I~s~PV~d~~~~~~~~~~~~~~~~~~vGiv~~~Dil~~l~~~~~l~ 86 (397)
+.+|+|+|...++++++++++|+.+|++.|.+++++++||++.+ .++++|+|+..||+.++...
T Consensus 2 ~~~v~~iM~~~~~~~~v~~~~~v~~a~~~m~~~~~~~~pVvd~~------------~~~~vGivt~~dl~~~~~~~---- 65 (136)
T 3lfr_A 2 DLQVRDIMVPRSQMISIKATQTPREFLPAVIDAAHSRYPVIGES------------HDDVLGVLLAKDLLPLILKA---- 65 (136)
T ss_dssp -CBHHHHSEEGGGCCCEETTCCHHHHHHHHHHHCCSEEEEESSS------------TTCEEEEEEGGGGGGGGGSS----
T ss_pred CCChHhccccHHHEEEEcCCCCHHHHHHHHHhCCCCEEEEEcCC------------CCcEEEEEEHHHHHHHHHhc----
Confidence 46899999755679999999999999999999999999999963 25899999999999887631
Q ss_pred ChhhhhcCChhhhccCCCCCceEEeCCCCCHHHHHHHHh-cCCceEEEeccCcchhhhhhhcccccccccCCCCceeeee
Q 016003 87 SPSLALKQPVSVLLPQLLPPLVMHVEPSCSLLEAMDLML-GGAQNLVVPIKNRLSIKRKQQQKLSSSSLTNHNGREFCWL 165 (397)
Q Consensus 87 ~~~~~~~~~V~~lm~~~~~~~~~~V~~~~sL~~al~~m~-~g~~r~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~II 165 (397)
.....+++++|. +++++.+++++.+|++.|. +++++++|++++ |+.+|||
T Consensus 66 ---~~~~~~v~~~m~-----~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~---------------------g~lvGii 116 (136)
T 3lfr_A 66 ---DGDSDDVKKLLR-----PATFVPESKRLNVLLREFRANHNHMAIVIDEY---------------------GGVAGLV 116 (136)
T ss_dssp ---SGGGCCGGGTCB-----CCCEEETTCBHHHHHHHHHHHTCCEEEEECTT---------------------SCEEEEE
T ss_pred ---cCCCcCHHHHcC-----CCeEECCCCcHHHHHHHHHhcCCeEEEEEeCC---------------------CCEEEEE
Confidence 123578999993 2789999999999999999 799999988532 4688999
Q ss_pred cHHHHHHHHHh
Q 016003 166 TQEDIIRFILS 176 (397)
Q Consensus 166 Tq~DIi~~l~~ 176 (397)
|..||++.+..
T Consensus 117 t~~Dil~~l~~ 127 (136)
T 3lfr_A 117 TIEDVLEQIVG 127 (136)
T ss_dssp EHHHHHTTC--
T ss_pred EHHHHHHHHhC
Confidence 99999988753
|
| >2yvy_A MGTE, Mg2+ transporter MGTE; membrane protein, transport protein; 2.30A {Thermus thermophilus} PDB: 2yvz_A | Back alignment and structure |
|---|
Probab=99.58 E-value=8.3e-15 Score=139.93 Aligned_cols=121 Identities=21% Similarity=0.243 Sum_probs=98.2
Q ss_pred cCCccccCCCCcCeEEEeCCCcHHHHHHHHHhc-----CCCCCEEEEEcCCCcEEEeeccCcccCcchhHHHHHhhcChh
Q 016003 186 ALSIDSLGIISTDVVAVDYHSPASLALEAISRS-----LFDQTSVAVVDSDGFLIGEISPSTLGCCDETVAAAITTLSAG 260 (397)
Q Consensus 186 ~~ti~~L~~~~~~v~tv~~~~~~~~a~~~m~~~-----~i~~s~vpVVd~~g~lvG~is~~dl~~~~~~~~~~~~~ls~~ 260 (397)
..++++ +|+++++++.+++++.+|++.|.++ ++ +.+||||++|+++|+| +.+
T Consensus 134 ~~~v~~--iM~~~~~~v~~~~tv~ea~~~~~~~~~~~~~~--~~~~Vvd~~~~lvGiv-------------------t~~ 190 (278)
T 2yvy_A 134 EDEAGG--LMTPEYVAVREGMTVEEVLRFLRRAAPDAETI--YYIYVVDEKGRLKGVL-------------------SLR 190 (278)
T ss_dssp TTBGGG--TCBSCCCEECTTSBHHHHHHHHHHHTTTCSCS--SEEEEECTTCBEEEEE-------------------EHH
T ss_pred cchHHh--hcCCCceEECCCCcHHHHHHHHHHccCCccce--eEEEEECCCCCEEEEE-------------------EHH
Confidence 445555 8999999999999999999999987 67 9999999999999994 456
Q ss_pred hhhhhhccCCCCchhHHHHHHHhhhcchhhhhhhhccccCCCCCCCCCCCCCccchhhhccccCCCccccccchhhhhcC
Q 016003 261 DLMAYIDCGGPPEDLVRVVKERLKDKGLEGMLEHFDMSSSLMPYLSTSSSSDEESTATSKLTRSGKHSRSMSYSARMVRR 340 (397)
Q Consensus 261 Dl~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (397)
|++.... ... ...+|.
T Consensus 191 dll~~~~--------------------------------------------------------~~~--------v~~im~ 206 (278)
T 2yvy_A 191 DLIVADP--------------------------------------------------------RTR--------VAEIMN 206 (278)
T ss_dssp HHHHSCT--------------------------------------------------------TCB--------STTTSB
T ss_pred HHhcCCC--------------------------------------------------------CCc--------HHHHhC
Confidence 6553100 000 012467
Q ss_pred CccEEeCCCCcHHHHHHHHHHcCCcEEEEEcCCCcEEEEEehHHHHHHHHHHH
Q 016003 341 AEAIVCHPTSSLMAVMIQAIAHRVTYVWVIEDDCTLTGIVTFSDLLKVFRKHL 393 (397)
Q Consensus 341 ~~~it~~~~~sl~~v~~~m~~~~i~rl~VVd~~~~lvGvVt~~DIl~~l~~~~ 393 (397)
+++++|++++++.+++.+|.+++++++||||++|+++||||..||++++.+..
T Consensus 207 ~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivT~~Dil~~i~~e~ 259 (278)
T 2yvy_A 207 PKVVYVRTDTDQEEVARLMADYDFTVLPVVDEEGRLVGIVTVDDVLDVLEAEA 259 (278)
T ss_dssp SSCCCEETTSBHHHHHHHHHHHTCSEEEEECTTSBEEEEEEHHHHHHHC----
T ss_pred CCCeEEeCCCCHHHHHHHHHhcCCCEEEEEeCCCeEEEEEEHHHHHHHHHHHh
Confidence 78999999999999999999999999999999999999999999999987653
|
| >2yzi_A Hypothetical protein PH0107; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; 2.25A {Pyrococcus horikoshii} SCOP: d.37.1.1 | Back alignment and structure |
|---|
Probab=99.57 E-value=1.5e-14 Score=122.30 Aligned_cols=127 Identities=14% Similarity=0.147 Sum_probs=106.3
Q ss_pred ccccchhhhhhcCCCCeEEEeCChhHHHHHHHHhhCCCceEEEEccCCCCCCCCCCCCCCCeEEEEEehhHHHHHHhhcC
Q 016003 4 SLLADEVSDLCLGKPALRALSISAAIADALSALKNSDESFISVWDCNCCSNHRKLGDACECQCVGKVCMVDVICYLCKDS 83 (397)
Q Consensus 4 ~~~~~~v~dl~~~k~~li~v~~~~tv~~Al~~L~~~~I~s~PV~d~~~~~~~~~~~~~~~~~~vGiv~~~Dil~~l~~~~ 83 (397)
.|...+|+|+|. ++++++++++|+.+|++.|.++++.++||+|. +++++|+|+..|+++.+....
T Consensus 3 ~l~~~~v~~im~--~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~-------------~~~~~Givt~~dl~~~~~~~~ 67 (138)
T 2yzi_A 3 MDMKAPIKVYMT--KKLLGVKPSTSVQEASRLMMEFDVGSLVVIND-------------DGNVVGFFTKSDIIRRVIVPG 67 (138)
T ss_dssp CCTTSBGGGTCB--CCCCEECTTSBHHHHHHHHHHHTCSEEEEECT-------------TSCEEEEEEHHHHHHHTTTTC
T ss_pred chhhhhHHHHhc--CCCeEECCCCcHHHHHHHHHHcCCCEEEEEcC-------------CCcEEEEEeHHHHHHHHHhcC
Confidence 466789999995 57899999999999999999999999999996 368999999999985443211
Q ss_pred CCCChhhhhcCChhhhccCCCCCceEEeCCCCCHHHHHHHHh-cCCceEEEeccCcchhhhhhhcccccccccCCCCcee
Q 016003 84 NSLSPSLALKQPVSVLLPQLLPPLVMHVEPSCSLLEAMDLML-GGAQNLVVPIKNRLSIKRKQQQKLSSSSLTNHNGREF 162 (397)
Q Consensus 84 ~l~~~~~~~~~~V~~lm~~~~~~~~~~V~~~~sL~~al~~m~-~g~~r~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (397)
.....+++++|... ++++.+++++.+|++.|. ++++++ |++++ |+.+
T Consensus 68 ------~~~~~~v~~~m~~~----~~~v~~~~~l~~~~~~m~~~~~~~l-Vvd~~---------------------g~~~ 115 (138)
T 2yzi_A 68 ------LPYDIPVERIMTRN----LITANVNTPLGEVLRKMAEHRIKHI-LIEEE---------------------GKIV 115 (138)
T ss_dssp ------CCTTSBGGGTCBCS----CCEEETTSBHHHHHHHHHHHTCSEE-EEEET---------------------TEEE
T ss_pred ------CcccCCHHHHhhCC----CeEECCCCcHHHHHHHHHhcCCCEE-EECCC---------------------CCEE
Confidence 12357899999754 899999999999999999 799999 87532 4678
Q ss_pred eeecHHHHHHHHHhc
Q 016003 163 CWLTQEDIIRFILSS 177 (397)
Q Consensus 163 ~IITq~DIi~~l~~~ 177 (397)
|+||+.||++++.+.
T Consensus 116 Giit~~dil~~~~~~ 130 (138)
T 2yzi_A 116 GIFTLSDLLEASRRR 130 (138)
T ss_dssp EEEEHHHHHHHHHCC
T ss_pred EEEEHHHHHHHHHHH
Confidence 999999999998754
|
| >1pbj_A Hypothetical protein; structural genomics, domain, PSI, protein structure initiative; 1.40A {Methanothermobacter thermautotrophicusdelta H} SCOP: d.37.1.1 | Back alignment and structure |
|---|
Probab=99.57 E-value=1.8e-14 Score=119.47 Aligned_cols=121 Identities=18% Similarity=0.241 Sum_probs=103.2
Q ss_pred chhhhhhcCCCCeEEEeCChhHHHHHHHHhhCCCceEEEEccCCCCCCCCCCCCCCCeEEEEEehhHHHHHHhhcCCCCC
Q 016003 8 DEVSDLCLGKPALRALSISAAIADALSALKNSDESFISVWDCNCCSNHRKLGDACECQCVGKVCMVDVICYLCKDSNSLS 87 (397)
Q Consensus 8 ~~v~dl~~~k~~li~v~~~~tv~~Al~~L~~~~I~s~PV~d~~~~~~~~~~~~~~~~~~vGiv~~~Dil~~l~~~~~l~~ 87 (397)
++|+|+|. ++++++++++|+.+|++.|.++++..+||+| + ++++|+++..|++.++.++..
T Consensus 1 m~v~~~m~--~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd-~-------------~~~~G~it~~dl~~~~~~~~~--- 61 (125)
T 1pbj_A 1 MRVEDVMV--TDVDTIDITASLEDVLRNYVENAKGSSVVVK-E-------------GVRVGIVTTWDVLEAIAEGDD--- 61 (125)
T ss_dssp -CHHHHCB--CSCCEEETTCBHHHHHHHHHHHCCCEEEEEE-T-------------TEEEEEEEHHHHHHHHHHTCC---
T ss_pred CCHHHhcC--CCceEECCCCcHHHHHHHHHHcCCCEEEEEe-C-------------CeeEEEEeHHHHHHHHhcCCc---
Confidence 47899994 5789999999999999999999999999999 4 589999999999988775321
Q ss_pred hhhhhcCChhhhccCCCCCceEEeCCCCCHHHHHHHHh-cCCceEEEeccCcchhhhhhhcccccccccCCCCceeeeec
Q 016003 88 PSLALKQPVSVLLPQLLPPLVMHVEPSCSLLEAMDLML-GGAQNLVVPIKNRLSIKRKQQQKLSSSSLTNHNGREFCWLT 166 (397)
Q Consensus 88 ~~~~~~~~V~~lm~~~~~~~~~~V~~~~sL~~al~~m~-~g~~r~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IIT 166 (397)
....+++++|... ++++.+++++.++++.|. +++++++|.++ ++.+|+||
T Consensus 62 ---~~~~~v~~~m~~~----~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~----------------------~~~~Gvit 112 (125)
T 1pbj_A 62 ---LAEVKVWEVMERD----LVTISPRATIKEAAEKMVKNVVWRLLVEED----------------------DEIIGVIS 112 (125)
T ss_dssp ---TTTSBHHHHCBCG----GGEECTTSCHHHHHHHHHHHTCSEEEEEET----------------------TEEEEEEE
T ss_pred ---ccccCHHHHcCCC----CeEECCCCCHHHHHHHHHhcCCcEEEEEEC----------------------CEEEEEEE
Confidence 2357899999754 899999999999999999 79999998753 35789999
Q ss_pred HHHHHHHHHh
Q 016003 167 QEDIIRFILS 176 (397)
Q Consensus 167 q~DIi~~l~~ 176 (397)
..|+++++.+
T Consensus 113 ~~dl~~~l~~ 122 (125)
T 1pbj_A 113 ATDILRAKMA 122 (125)
T ss_dssp HHHHHHHHC-
T ss_pred HHHHHHHHHh
Confidence 9999999853
|
| >2rc3_A CBS domain; in SITU proteolysis, BR, structural genomics, PSI-2, protein structure initiative; HET: NAD; 1.60A {Nitrosomonas europaea atcc 19718} SCOP: d.37.1.1 | Back alignment and structure |
|---|
Probab=99.57 E-value=1.5e-14 Score=122.14 Aligned_cols=129 Identities=16% Similarity=0.111 Sum_probs=104.9
Q ss_pred ccccc-hhhhhhcCC-CCeEEEeCChhHHHHHHHHhhCCCceEEEEccCCCCCCCCCCCCCCCeEEEEEehhHHHHHHhh
Q 016003 4 SLLAD-EVSDLCLGK-PALRALSISAAIADALSALKNSDESFISVWDCNCCSNHRKLGDACECQCVGKVCMVDVICYLCK 81 (397)
Q Consensus 4 ~~~~~-~v~dl~~~k-~~li~v~~~~tv~~Al~~L~~~~I~s~PV~d~~~~~~~~~~~~~~~~~~vGiv~~~Dil~~l~~ 81 (397)
|...+ +|+|+|..+ ++++++++++|+.+|++.|.++++.++||+| + ++++|+|+..|++.++..
T Consensus 1 ~~~~m~~v~~im~~~~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd-~-------------~~~~Givt~~dl~~~~~~ 66 (135)
T 2rc3_A 1 FQGHMKTVKHLLQEKGHTVVAIGPDDSVFNAMQKMAADNIGALLVMK-D-------------EKLVGILTERDFSRKSYL 66 (135)
T ss_dssp ----CCBHHHHHHHHCCCCCEECTTSBHHHHHHHHHHHTCSEEEEEE-T-------------TEEEEEEEHHHHHHHGGG
T ss_pred CCccceeHHHHHhcCCCCcEEECCCCcHHHHHHHHHhcCCCEEEEEE-C-------------CEEEEEEehHHHHHHHHH
Confidence 34456 899999522 5789999999999999999999999999998 3 589999999999976554
Q ss_pred cCCCCChhhhhcCChhhhccCCCCCceEEeCCCCCHHHHHHHHh-cCCceEEEeccCcchhhhhhhcccccccccCCCCc
Q 016003 82 DSNSLSPSLALKQPVSVLLPQLLPPLVMHVEPSCSLLEAMDLML-GGAQNLVVPIKNRLSIKRKQQQKLSSSSLTNHNGR 160 (397)
Q Consensus 82 ~~~l~~~~~~~~~~V~~lm~~~~~~~~~~V~~~~sL~~al~~m~-~g~~r~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (397)
... ...+.+++++|... ++++.+++++.+|++.|. +++++++|++ + ++
T Consensus 67 ~~~-----~~~~~~v~~~m~~~----~~~v~~~~~l~~~~~~m~~~~~~~lpVvd-~---------------------g~ 115 (135)
T 2rc3_A 67 LDK-----PVKDTQVKEIMTRQ----VAYVDLNNTNEDCMALITEMRVRHLPVLD-D---------------------GK 115 (135)
T ss_dssp SSS-----CGGGSBGGGTSBCS----CCCBCTTCBHHHHHHHHHHHTCSEEEEEE-T---------------------TE
T ss_pred cCC-----CcccCCHHHhccCC----CeEECCCCcHHHHHHHHHHhCCCEEEEEe-C---------------------CE
Confidence 211 23467899999755 899999999999999999 7999999885 2 35
Q ss_pred eeeeecHHHHHHHHHhc
Q 016003 161 EFCWLTQEDIIRFILSS 177 (397)
Q Consensus 161 ~~~IITq~DIi~~l~~~ 177 (397)
.+|+||..||++++.+.
T Consensus 116 ~~Giit~~dll~~~~~~ 132 (135)
T 2rc3_A 116 VIGLLSIGDLVKDAISQ 132 (135)
T ss_dssp EEEEEEHHHHHHHHHC-
T ss_pred EEEEEEHHHHHHHHHhc
Confidence 78999999999998753
|
| >2rih_A Conserved protein with 2 CBS domains; bateman domain, AMP binding protein, ligand-BIND protein; 2.10A {Pyrobaculum aerophilum} SCOP: d.37.1.1 PDB: 2rif_A | Back alignment and structure |
|---|
Probab=99.56 E-value=3.6e-14 Score=120.75 Aligned_cols=122 Identities=17% Similarity=0.126 Sum_probs=103.8
Q ss_pred cchhhhhhcCCCCeEEEeCChhHHHHHHHHhhCCCceEEEEccCCCCCCCCCCCCCCC--eEEEEEehhHHHHHHhhcCC
Q 016003 7 ADEVSDLCLGKPALRALSISAAIADALSALKNSDESFISVWDCNCCSNHRKLGDACEC--QCVGKVCMVDVICYLCKDSN 84 (397)
Q Consensus 7 ~~~v~dl~~~k~~li~v~~~~tv~~Al~~L~~~~I~s~PV~d~~~~~~~~~~~~~~~~--~~vGiv~~~Dil~~l~~~~~ 84 (397)
+.+|+|+|. ++++++++++|+.+|++.|.++++.++||+|. ++ +++|+|+..|++.++.+..
T Consensus 4 ~~~v~~im~--~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~-------------~~~~~~~Givt~~dl~~~~~~~~- 67 (141)
T 2rih_A 4 AIRTSELLK--RPPVSLPETATIREVATELAKNRVGLAVLTAR-------------DNPKRPVAVVSERDILRAVAQRL- 67 (141)
T ss_dssp -CBGGGGCC--SCCEEEETTCBHHHHHHHHHHHTCSEEEEEET-------------TEEEEEEEEEEHHHHHHHHHTTC-
T ss_pred ceEHHHHhc--CCCeEeCCCCcHHHHHHHHHHcCCCEEEEEcC-------------CCcceeEEEEEHHHHHHHHhcCC-
Confidence 468999994 67899999999999999999999999999996 35 8999999999999886532
Q ss_pred CCChhhhhcCChhhhccCCCCCceEEeCCCCCHHHHHHHHh-cCCceEEEeccCcchhhhhhhcccccccccCCCCceee
Q 016003 85 SLSPSLALKQPVSVLLPQLLPPLVMHVEPSCSLLEAMDLML-GGAQNLVVPIKNRLSIKRKQQQKLSSSSLTNHNGREFC 163 (397)
Q Consensus 85 l~~~~~~~~~~V~~lm~~~~~~~~~~V~~~~sL~~al~~m~-~g~~r~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (397)
..+.+++++|... ++++.++ ++.+|++.|. +++++++|++++ ++.+|
T Consensus 68 ------~~~~~v~~~m~~~----~~~v~~~-~l~~a~~~m~~~~~~~l~Vvd~~---------------------g~~~G 115 (141)
T 2rih_A 68 ------DLDGPAMPIANSP----ITVLDTD-PVHVAAEKMRRHNIRHVVVVNKN---------------------GELVG 115 (141)
T ss_dssp ------CTTSBSGGGCBCC----CEEETTS-BHHHHHHHHHHHTCSEEEEECTT---------------------SCEEE
T ss_pred ------CCCCCHHHHcCCC----CeEEcCC-CHHHHHHHHHHcCCeEEEEEcCC---------------------CcEEE
Confidence 1257899999754 8999999 9999999999 799999988632 46789
Q ss_pred eecHHHHHHHHHh
Q 016003 164 WLTQEDIIRFILS 176 (397)
Q Consensus 164 IITq~DIi~~l~~ 176 (397)
+||..||++.+..
T Consensus 116 iit~~dll~~~~~ 128 (141)
T 2rih_A 116 VLSIRDLCFERAI 128 (141)
T ss_dssp EEEHHHHHSCHHH
T ss_pred EEEHHHHHHHHHH
Confidence 9999999876654
|
| >4gqw_A CBS domain-containing protein CBSX1, chloroplasti; thioredoxin, plant, protein binding; 2.20A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.56 E-value=5e-15 Score=126.78 Aligned_cols=133 Identities=21% Similarity=0.204 Sum_probs=105.3
Q ss_pred cchhhhhhcCCCCeEEEeCChhHHHHHHHHhhCCCceEEEEccCCCCCCCCCCCCCCCeEEEEEehhHHHHHHhhcCCCC
Q 016003 7 ADEVSDLCLGKPALRALSISAAIADALSALKNSDESFISVWDCNCCSNHRKLGDACECQCVGKVCMVDVICYLCKDSNSL 86 (397)
Q Consensus 7 ~~~v~dl~~~k~~li~v~~~~tv~~Al~~L~~~~I~s~PV~d~~~~~~~~~~~~~~~~~~vGiv~~~Dil~~l~~~~~l~ 86 (397)
..+|+|+|....+++++++++|+.+|++.|.++++..+||+|. +++++|+|+..||+.++..+....
T Consensus 4 ~~~v~~im~~~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~-------------~~~~~G~vt~~dl~~~~~~~~~~~ 70 (152)
T 4gqw_A 4 VYTVGEFMTKKEDLHVVKPTTTVDEALELLVENRITGFPVIDE-------------DWKLVGLVSDYDLLALDSGDSTWK 70 (152)
T ss_dssp CSBGGGTSEESTTCCCBCTTSBHHHHHHHHHHTTCSEEEEECT-------------TCBEEEEEEHHHHTTCC----CCH
T ss_pred eEEhhhccCCCCCCeEECCCCcHHHHHHHHHHcCCceEEEEeC-------------CCeEEEEEEHHHHHHhhcccCccc
Confidence 5789999976557999999999999999999999999999996 368999999999987644211100
Q ss_pred -------ChhhhhcCChhhhccCCCCCceEEeCCCCCHHHHHHHHh-cCCceEEEeccCcchhhhhhhcccccccccCCC
Q 016003 87 -------SPSLALKQPVSVLLPQLLPPLVMHVEPSCSLLEAMDLML-GGAQNLVVPIKNRLSIKRKQQQKLSSSSLTNHN 158 (397)
Q Consensus 87 -------~~~~~~~~~V~~lm~~~~~~~~~~V~~~~sL~~al~~m~-~g~~r~~V~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (397)
........+++++|... ++++.++++|.+|++.|. +++++++|++++
T Consensus 71 ~~~~~~~~~~~~~~~~v~~~m~~~----~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~--------------------- 125 (152)
T 4gqw_A 71 TFNAVQKLLSKTNGKLVGDLMTPA----PLVVEEKTNLEDAAKILLETKYRRLPVVDSD--------------------- 125 (152)
T ss_dssp HHHHHHTC-----CCBHHHHSEES----CCCEESSSBHHHHHHHHHHSSCCEEEEECTT---------------------
T ss_pred chHHHHHHHHHhccccHHHhcCCC----ceEECCCCcHHHHHHHHHHCCCCEEEEECCC---------------------
Confidence 00123457899999754 788999999999999999 799999998632
Q ss_pred CceeeeecHHHHHHHHHhc
Q 016003 159 GREFCWLTQEDIIRFILSS 177 (397)
Q Consensus 159 ~~~~~IITq~DIi~~l~~~ 177 (397)
++.+|+||+.||++++.+.
T Consensus 126 g~~~Giit~~dil~~~~~~ 144 (152)
T 4gqw_A 126 GKLVGIITRGNVVRAALQI 144 (152)
T ss_dssp SBEEEEEEHHHHHHHHHC-
T ss_pred CcEEEEEEHHHHHHHHHhc
Confidence 4678999999999999754
|
| >1vr9_A CBS domain protein/ACT domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE; 1.70A {Thermotoga maritima} SCOP: d.37.1.1 | Back alignment and structure |
|---|
Probab=99.56 E-value=1.2e-14 Score=133.48 Aligned_cols=160 Identities=15% Similarity=0.089 Sum_probs=101.4
Q ss_pred chhhhhhcCCCCeEEEeCChhHHHHHHHHhhCCCceEEEEccCCCCCCCCCCCCCCCeEEEEEehhHHHHHHhhcCCCCC
Q 016003 8 DEVSDLCLGKPALRALSISAAIADALSALKNSDESFISVWDCNCCSNHRKLGDACECQCVGKVCMVDVICYLCKDSNSLS 87 (397)
Q Consensus 8 ~~v~dl~~~k~~li~v~~~~tv~~Al~~L~~~~I~s~PV~d~~~~~~~~~~~~~~~~~~vGiv~~~Dil~~l~~~~~l~~ 87 (397)
.+++++|. ++++++++++|+.+|+++|.++++.++||+|. +++++|+|+..|+..++.
T Consensus 13 ~~~~~~~~--~~~~~v~~~~tv~ea~~~m~~~~~~~~pVvd~-------------~~~l~Givt~~dl~~~~~------- 70 (213)
T 1vr9_A 13 MKVKKWVT--QDFPMVEESATVRECLHRMRQYQTNECIVKDR-------------EGHFRGVVNKEDLLDLDL------- 70 (213)
T ss_dssp CBGGGGCB--SCSCEEETTCBHHHHHHHHHHTTSSEEEEECT-------------TSBEEEEEEGGGGTTSCT-------
T ss_pred cCHHHhhc--CCCeEECCCCcHHHHHHHHHHCCCCEEEEEcC-------------CCEEEEEEEHHHHHhhcC-------
Confidence 45788884 67899999999999999999999999999995 368999999999986532
Q ss_pred hhhhhcCChhhhccCCCCCceEEeCCCCCHHHHHHHHh-cCCceEEEeccCcchhhhhhhcccccccccCCCCceeeeec
Q 016003 88 PSLALKQPVSVLLPQLLPPLVMHVEPSCSLLEAMDLML-GGAQNLVVPIKNRLSIKRKQQQKLSSSSLTNHNGREFCWLT 166 (397)
Q Consensus 88 ~~~~~~~~V~~lm~~~~~~~~~~V~~~~sL~~al~~m~-~g~~r~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IIT 166 (397)
+.+|+++|... ++++.+++++.+|++.|. +++++++|++++ ++.+|+||
T Consensus 71 -----~~~v~~im~~~----~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~---------------------g~lvGiit 120 (213)
T 1vr9_A 71 -----DSSVFNKVSLP----DFFVHEEDNITHALLLFLEHQEPYLPVVDEE---------------------MRLKGAVS 120 (213)
T ss_dssp -----TSBSGGGCBCT----TCCEETTSBHHHHHHHHHHCCCSEEEEECTT---------------------CBEEEEEE
T ss_pred -----CCcHHHHccCC----CEEECCCCcHHHHHHHHHHhCCCEEEEEcCC---------------------CEEEEEEE
Confidence 35799999754 889999999999999999 799999998632 46789999
Q ss_pred HHHHHHHHHhccCCCCCCccCCccccCCCCcC-eEEEeCCCcHHHHHHHHHhcCCCCCEEEEEcCCC
Q 016003 167 QEDIIRFILSSISLFSPIPALSIDSLGIISTD-VVAVDYHSPASLALEAISRSLFDQTSVAVVDSDG 232 (397)
Q Consensus 167 q~DIi~~l~~~~~~l~~l~~~ti~~L~~~~~~-v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g 232 (397)
..|+++.+...... . + .+++- +.+.....++.+|++.|.++++ ..++|++.+|
T Consensus 121 ~~Dil~~~~~~~~~-~--------~--~~~~l~~~~~~~~~~l~~~~~~l~~~~~--~~l~V~~~~~ 174 (213)
T 1vr9_A 121 LHDFLEALIEALAM-D--------V--PGIRFSVLLEDKPGELRKVVDALALSNI--NILSVITTRS 174 (213)
T ss_dssp HHHHHHHHHHSCC------------------------------------------------------
T ss_pred HHHHHHHHHHHhcC-C--------C--CcEEEEEEeCCCCccHHHHHHHHHHCCC--cEEEEEEEec
Confidence 99999988643211 0 0 11111 1122344459999999999999 9999987655
|
| >1yav_A Hypothetical protein BSU14130; cystathionine beta synthase (CBS) domain, structural genomics, protein structure initiative, PSI; 2.10A {Bacillus subtilis} SCOP: d.37.1.1 | Back alignment and structure |
|---|
Probab=99.56 E-value=1.5e-14 Score=125.78 Aligned_cols=134 Identities=11% Similarity=0.111 Sum_probs=108.5
Q ss_pred ccccchhhhhhcCCCCeEEEeCChhHHHHHHHHhhCCCceEEEEccCCCCCCCCCCCCCCCeEEEEEehhHHHHHHhhcC
Q 016003 4 SLLADEVSDLCLGKPALRALSISAAIADALSALKNSDESFISVWDCNCCSNHRKLGDACECQCVGKVCMVDVICYLCKDS 83 (397)
Q Consensus 4 ~~~~~~v~dl~~~k~~li~v~~~~tv~~Al~~L~~~~I~s~PV~d~~~~~~~~~~~~~~~~~~vGiv~~~Dil~~l~~~~ 83 (397)
.|...+|+|+|..+.+++++++++|+.+|++.|.++++.++||+|.+ ++++|+|+..||+.++....
T Consensus 10 ~l~~~~v~~im~~~~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd~~-------------~~lvGivt~~dl~~~~~~~~ 76 (159)
T 1yav_A 10 QLLEATVGQFMIEADKVAHVQVGNNLEHALLVLTKTGYTAIPVLDPS-------------YRLHGLIGTNMIMNSIFGLE 76 (159)
T ss_dssp -CTTCBHHHHSEEGGGSCCEETTCBHHHHHHHHHHHCCSEEEEECTT-------------CBEEEEEEHHHHHHHHBCSS
T ss_pred HHhHhhHHHHhCCccceEEECCCCcHHHHHHHHHhCCCcEEEEECCC-------------CCEEEEeEHHHHHHHhhhhc
Confidence 35678999999643378999999999999999999999999999963 68999999999999886532
Q ss_pred CCCChhhhhcCChhhhccCCCCCceEEeCCCCCHHHHHHHHh-cCCceEEEeccCcchhhhhhhcccccccccCCCCcee
Q 016003 84 NSLSPSLALKQPVSVLLPQLLPPLVMHVEPSCSLLEAMDLML-GGAQNLVVPIKNRLSIKRKQQQKLSSSSLTNHNGREF 162 (397)
Q Consensus 84 ~l~~~~~~~~~~V~~lm~~~~~~~~~~V~~~~sL~~al~~m~-~g~~r~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (397)
.. +.......+|+++|... ++++.+++++.+|++.|. +++ ++|+++ +++.+
T Consensus 77 ~~-~~~~~~~~~v~~~m~~~----~~~v~~~~~l~~a~~~m~~~~~--lpVvd~---------------------~g~~v 128 (159)
T 1yav_A 77 RI-EFEKLDQITVEEVMLTD----IPRLHINDPIMKGFGMVINNGF--VCVEND---------------------EQVFE 128 (159)
T ss_dssp SB-CGGGTTTSBHHHHSBCS----CCEEETTSBHHHHHHHTTTCSE--EEEECT---------------------TCBEE
T ss_pred cc-chhhhccCCHHHhcCCC----CceEcCCCCHHHHHHHHHhCCE--EEEEeC---------------------CCeEE
Confidence 21 12234567899999754 899999999999999998 454 777652 24678
Q ss_pred eeecHHHHHHHHHhcc
Q 016003 163 CWLTQEDIIRFILSSI 178 (397)
Q Consensus 163 ~IITq~DIi~~l~~~~ 178 (397)
|+||+.||++++.+..
T Consensus 129 Giit~~dil~~~~~~~ 144 (159)
T 1yav_A 129 GIFTRRVVLKELNKHI 144 (159)
T ss_dssp EEEEHHHHHHHHHHHC
T ss_pred EEEEHHHHHHHHHHHH
Confidence 9999999999998653
|
| >2emq_A Hypothetical conserved protein; CBS domains, NPPSFA, national project on protein structural functional analyses; 2.50A {Geobacillus kaustophilus} | Back alignment and structure |
|---|
Probab=99.56 E-value=2e-14 Score=124.26 Aligned_cols=136 Identities=13% Similarity=0.123 Sum_probs=108.1
Q ss_pred ccccchhhhhhcCCCCeEEEeCChhHHHHHHHHhhCCCceEEEEccCCCCCCCCCCCCCCCeEEEEEehhHHHHHHhhcC
Q 016003 4 SLLADEVSDLCLGKPALRALSISAAIADALSALKNSDESFISVWDCNCCSNHRKLGDACECQCVGKVCMVDVICYLCKDS 83 (397)
Q Consensus 4 ~~~~~~v~dl~~~k~~li~v~~~~tv~~Al~~L~~~~I~s~PV~d~~~~~~~~~~~~~~~~~~vGiv~~~Dil~~l~~~~ 83 (397)
.|...+|+|+|..+.+++++++++|+.+|++.|.++++.++||+|.+ ++++|+|+..|++.++....
T Consensus 7 ~l~~~~v~~im~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~-------------~~~~Givt~~dl~~~~~~~~ 73 (157)
T 2emq_A 7 EFMQMTVKPFLIPADKVAHVQPGNYLDHALLVLTKTGYSAIPVLDTS-------------YKLHGLISMTMMMDAILGLE 73 (157)
T ss_dssp ---CCBSTTTCEEGGGSCCBCTTSBHHHHHHHHHHSSSSEEEEECTT-------------CCEEEEEEHHHHHHHSBCSS
T ss_pred hHhhCcHHhhccCCccceEECCCCcHHHHHHHHHHCCceEEEEEcCC-------------CCEEEEeeHHHHHHHHhccc
Confidence 45678999999643478999999999999999999999999999963 68999999999999876422
Q ss_pred CCCChhhhhcCChhhhccCCCCCceEEeCCCCCHHHHHHHHh-cCCceEEEeccCcchhhhhhhcccccccccCCCCcee
Q 016003 84 NSLSPSLALKQPVSVLLPQLLPPLVMHVEPSCSLLEAMDLML-GGAQNLVVPIKNRLSIKRKQQQKLSSSSLTNHNGREF 162 (397)
Q Consensus 84 ~l~~~~~~~~~~V~~lm~~~~~~~~~~V~~~~sL~~al~~m~-~g~~r~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (397)
.. +.......+++++|... ++++.++++|.+|++.|. +++ ++|+++ +++.+
T Consensus 74 ~~-~~~~~~~~~v~~~m~~~----~~~v~~~~~l~~a~~~m~~~~~--l~Vvd~---------------------~g~~~ 125 (157)
T 2emq_A 74 RI-EFERLETMKVEEVMNRN----IPRLRLDDSLMKAVGLIVNHPF--VCVEND---------------------DGYFA 125 (157)
T ss_dssp SB-CGGGGGTCBGGGTCBCC----CCEEETTSBHHHHHHHHHHSSE--EEEECS---------------------SSSEE
T ss_pred cc-chHHhcCCcHHHHhCCC----CceecCCCcHHHHHHHHhhCCE--EEEEcC---------------------CCeEE
Confidence 11 11233567899999754 899999999999999999 555 777642 24688
Q ss_pred eeecHHHHHHHHHhccCC
Q 016003 163 CWLTQEDIIRFILSSISL 180 (397)
Q Consensus 163 ~IITq~DIi~~l~~~~~~ 180 (397)
|+||..||++++.+....
T Consensus 126 Giit~~dil~~~~~~~~~ 143 (157)
T 2emq_A 126 GIFTRREVLKQLNKQLHR 143 (157)
T ss_dssp EEEEHHHHHHHHHHTTCC
T ss_pred EEEEHHHHHHHHHHHhhc
Confidence 999999999999875443
|
| >3ocm_A Putative membrane protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADP; 1.80A {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=99.55 E-value=1.8e-14 Score=128.20 Aligned_cols=124 Identities=19% Similarity=0.168 Sum_probs=105.0
Q ss_pred cccchhhhhhcCCCCeEEEeCChhHHHHHHHHhhCCCceEEEEccCCCCCCCCCCCCCCCeEEEEEehhHHHHHHhhcCC
Q 016003 5 LLADEVSDLCLGKPALRALSISAAIADALSALKNSDESFISVWDCNCCSNHRKLGDACECQCVGKVCMVDVICYLCKDSN 84 (397)
Q Consensus 5 ~~~~~v~dl~~~k~~li~v~~~~tv~~Al~~L~~~~I~s~PV~d~~~~~~~~~~~~~~~~~~vGiv~~~Dil~~l~~~~~ 84 (397)
|...+|+|+|...++++++++++|+.+|++.|.+++++++||++.+ .++++|+|+..||+.++..+.
T Consensus 33 l~~~~v~diM~~~~~v~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~------------~~~lvGivt~~Dl~~~~~~~~- 99 (173)
T 3ocm_A 33 LAERSIRSIMTPRTDVSWVNIDDDAATIRQQLTAAPHSFFPVCRGS------------LDEVVGIGRAKDLVADLITEG- 99 (173)
T ss_dssp HTTSCSTTTSEEGGGCCCEETTSCHHHHHHHHHHSSCSEEEEESSS------------TTSEEEEEEHHHHHHHHHHHS-
T ss_pred cCCCCHHHhCCcHHHeEEEeCCCCHHHHHHHHHhCCCCEEEEEeCC------------CCCEEEEEEHHHHHHHHhcCC-
Confidence 5678899999765679999999999999999999999999999853 268999999999999876531
Q ss_pred CCChhhhhcCChhhhccCCCCCceEEeCCCCCHHHHHHHHh-cCCceEEEeccCcchhhhhhhcccccccccCCCCceee
Q 016003 85 SLSPSLALKQPVSVLLPQLLPPLVMHVEPSCSLLEAMDLML-GGAQNLVVPIKNRLSIKRKQQQKLSSSSLTNHNGREFC 163 (397)
Q Consensus 85 l~~~~~~~~~~V~~lm~~~~~~~~~~V~~~~sL~~al~~m~-~g~~r~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (397)
+.+++ +| .. ++++.+++++.+|++.|. +++++++|++++ |+.+|
T Consensus 100 --------~~~v~-~~-~~----~~~v~~~~~l~~al~~m~~~~~~~~~Vvde~---------------------g~lvG 144 (173)
T 3ocm_A 100 --------RVRRN-RL-RD----PIIVHESIGILRLMDTLKRSRGQLVLVADEF---------------------GAIEG 144 (173)
T ss_dssp --------SCCGG-GS-BC----CCEECGGGCHHHHHHHHHHSTTCCEEEECTT---------------------CCEEE
T ss_pred --------cchhH-hc-CC----CeEECCCCcHHHHHHHHHHcCCeEEEEEeCC---------------------CCEEE
Confidence 35677 44 33 789999999999999999 789999887532 56889
Q ss_pred eecHHHHHHHHHh
Q 016003 164 WLTQEDIIRFILS 176 (397)
Q Consensus 164 IITq~DIi~~l~~ 176 (397)
|||..||++.+..
T Consensus 145 iIT~~Dil~~l~~ 157 (173)
T 3ocm_A 145 LVTPIDVFEAIAG 157 (173)
T ss_dssp EECHHHHHHHHHC
T ss_pred EEeHHHHHHHHhC
Confidence 9999999999974
|
| >4fry_A Putative signal-transduction protein with CBS DOM; CBS domain,ssgcid, structural genomics, niaid; HET: NAD AMP; 2.10A {Burkholderia ambifaria} | Back alignment and structure |
|---|
Probab=99.55 E-value=3.2e-14 Score=123.27 Aligned_cols=125 Identities=19% Similarity=0.197 Sum_probs=106.9
Q ss_pred chhhhhhcCC----CCeEEEeCChhHHHHHHHHhhCCCceEEEEccCCCCCCCCCCCCCCCeEEEEEehhHHHHHHhhcC
Q 016003 8 DEVSDLCLGK----PALRALSISAAIADALSALKNSDESFISVWDCNCCSNHRKLGDACECQCVGKVCMVDVICYLCKDS 83 (397)
Q Consensus 8 ~~v~dl~~~k----~~li~v~~~~tv~~Al~~L~~~~I~s~PV~d~~~~~~~~~~~~~~~~~~vGiv~~~Dil~~l~~~~ 83 (397)
++|+|+|..+ ++++++++++|+.+|++.|.++++..+||.+ +++++|+|+..||+.++....
T Consensus 7 ~~v~dim~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~~~~~V~~--------------~~~~~Givt~~dl~~~~~~~~ 72 (157)
T 4fry_A 7 TTVAQILKAKPDSGRTIYTVTKNDFVYDAIKLMAEKGIGALLVVD--------------GDDIAGIVTERDYARKVVLQE 72 (157)
T ss_dssp CBHHHHHHHSTTTTCCCCEEETTSBHHHHHHHHHHHTCSEEEEES--------------SSSEEEEEEHHHHHHHSGGGT
T ss_pred HHHHHHHhcccccCCCCeEECCCCcHHHHHHHHHHcCCCEEEEee--------------CCEEEEEEEHHHHHHHHHhcc
Confidence 5799999765 6789999999999999999999999999955 268999999999999887532
Q ss_pred CCCChhhhhcCChhhhccCCCCCceEEeCCCCCHHHHHHHHh-cCCceEEEeccCcchhhhhhhcccccccccCCCCcee
Q 016003 84 NSLSPSLALKQPVSVLLPQLLPPLVMHVEPSCSLLEAMDLML-GGAQNLVVPIKNRLSIKRKQQQKLSSSSLTNHNGREF 162 (397)
Q Consensus 84 ~l~~~~~~~~~~V~~lm~~~~~~~~~~V~~~~sL~~al~~m~-~g~~r~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (397)
. .....+++++|... ++++.+++++.+|++.|. +++++++|.+ + ++.+
T Consensus 73 ~-----~~~~~~v~~~m~~~----~~~v~~~~~l~~~~~~m~~~~~~~lpVvd-~---------------------g~~~ 121 (157)
T 4fry_A 73 R-----SSKATRVEEIMTAK----VRYVEPSQSTDECMALMTEHRMRHLPVLD-G---------------------GKLI 121 (157)
T ss_dssp C-----CSSSCBHHHHSBSS----CCCBCTTSBHHHHHHHHHHHTCSEEEEEE-T---------------------TEEE
T ss_pred C-----CccccCHHHHcCCC----CcEECCCCcHHHHHHHHHHcCCCEEEEEE-C---------------------CEEE
Confidence 1 12467899999754 889999999999999999 7999999985 2 3578
Q ss_pred eeecHHHHHHHHHhc
Q 016003 163 CWLTQEDIIRFILSS 177 (397)
Q Consensus 163 ~IITq~DIi~~l~~~ 177 (397)
|+||+.||++++.+.
T Consensus 122 Giit~~dil~~l~~~ 136 (157)
T 4fry_A 122 GLISIGDLVKSVIAD 136 (157)
T ss_dssp EEEEHHHHHHHHHTT
T ss_pred EEEEHHHHHHHHHHH
Confidence 999999999999864
|
| >2o16_A Acetoin utilization protein ACUB, putative; structural genomics, unknown function, PSI-2, protein struct initiative; 1.90A {Vibrio cholerae} SCOP: d.37.1.1 | Back alignment and structure |
|---|
Probab=99.54 E-value=3.8e-14 Score=123.73 Aligned_cols=131 Identities=21% Similarity=0.199 Sum_probs=106.6
Q ss_pred ccchhhhhhcCCCCeEEEeCChhHHHHHHHHhhCCCceEEEEccCCCCCCCCCCCCCCCeEEEEEehhHHHHHHhhcCC-
Q 016003 6 LADEVSDLCLGKPALRALSISAAIADALSALKNSDESFISVWDCNCCSNHRKLGDACECQCVGKVCMVDVICYLCKDSN- 84 (397)
Q Consensus 6 ~~~~v~dl~~~k~~li~v~~~~tv~~Al~~L~~~~I~s~PV~d~~~~~~~~~~~~~~~~~~vGiv~~~Dil~~l~~~~~- 84 (397)
...+|+|+|. ++++++++++|+.+|++.|.++++.++||+|. +++++|+|+..||+.++.....
T Consensus 3 ~~~~v~dim~--~~~~~v~~~~tl~~a~~~m~~~~~~~~pVvd~-------------~~~lvGivt~~dl~~~~~~~~~~ 67 (160)
T 2o16_A 3 LMIKVEDMMT--RHPHTLLRTHTLNDAKHLMEALDIRHVPIVDA-------------NKKLLGIVSQRDLLAAQESSLQR 67 (160)
T ss_dssp CCCBGGGTSE--ESCCCBCTTSBHHHHHHHHHHHTCSEEEEECT-------------TCBEEEEEEHHHHHHHHHHHCC-
T ss_pred CcCcHHHHhc--CCCeEECCCCcHHHHHHHHHHcCCCEEEEEcC-------------CCcEEEEEeHHHHHHHHHHhhcc
Confidence 4578999995 57899999999999999999999999999996 3689999999999998764210
Q ss_pred C-CChhhhhcCChhhhccCCCCCceEEeCCCCCHHHHHHHHh-cCCceEEEeccCcchhhhhhhcccccccccCCCCcee
Q 016003 85 S-LSPSLALKQPVSVLLPQLLPPLVMHVEPSCSLLEAMDLML-GGAQNLVVPIKNRLSIKRKQQQKLSSSSLTNHNGREF 162 (397)
Q Consensus 85 l-~~~~~~~~~~V~~lm~~~~~~~~~~V~~~~sL~~al~~m~-~g~~r~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (397)
. .........+++++|... ++++.++++|.+|++.|. +++++++|+++ ++.+
T Consensus 68 ~~~~~~~~~~~~v~~im~~~----~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~----------------------g~lv 121 (160)
T 2o16_A 68 SAQGDSLAFETPLFEVMHTD----VTSVAPQAGLKESAIYMQKHKIGCLPVVAK----------------------DVLV 121 (160)
T ss_dssp --------CCCBHHHHSCSC----EEEBCTTSBHHHHHHHHHHTTCSCEEEEET----------------------TEEE
T ss_pred cccccchhcccCHHHHhcCC----CeEECCCCCHHHHHHHHHHhCCCEEEEEEC----------------------CEEE
Confidence 0 001123467899999754 899999999999999999 78999998853 3578
Q ss_pred eeecHHHHHHHHHhc
Q 016003 163 CWLTQEDIIRFILSS 177 (397)
Q Consensus 163 ~IITq~DIi~~l~~~ 177 (397)
|+||..||++++.+.
T Consensus 122 Giit~~dil~~~~~~ 136 (160)
T 2o16_A 122 GIITDSDFVTIAINL 136 (160)
T ss_dssp EEECHHHHHHHHHHH
T ss_pred EEEEHHHHHHHHHHH
Confidence 999999999998763
|
| >3gby_A Uncharacterized protein CT1051; CBS domain, structural genomics, PSI-2, protein structure initiative; HET: EPE; 1.66A {Chlorobium tepidum tls} | Back alignment and structure |
|---|
Probab=99.54 E-value=1.6e-14 Score=121.05 Aligned_cols=123 Identities=16% Similarity=0.147 Sum_probs=104.5
Q ss_pred ccchhhhhhcCCCCeEEEeCChhHHHHHHHHhhCCCceEEEEccCCCCCCCCCCCCCCCeEEEEEehhHHHHHHhhcCCC
Q 016003 6 LADEVSDLCLGKPALRALSISAAIADALSALKNSDESFISVWDCNCCSNHRKLGDACECQCVGKVCMVDVICYLCKDSNS 85 (397)
Q Consensus 6 ~~~~v~dl~~~k~~li~v~~~~tv~~Al~~L~~~~I~s~PV~d~~~~~~~~~~~~~~~~~~vGiv~~~Dil~~l~~~~~l 85 (397)
.+.+|+++|. +++.++++++|+.+|++.|.++++..+||+|. ++++|+|+..|++..+.+..
T Consensus 3 ~s~~v~~~m~--~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~--------------~~~~Givt~~dl~~~~~~~~-- 64 (128)
T 3gby_A 3 ASVTFSYLAE--TDYPVFTLGGSTADAARRLAASGCACAPVLDG--------------ERYLGMVHLSRLLEGRKGWP-- 64 (128)
T ss_dssp TTCBGGGGCB--CCSCCEETTSBHHHHHHHHHHHTCSEEEEEET--------------TEEEEEEEHHHHHTTCSSSC--
T ss_pred cceEHHHhhc--CCcceECCCCCHHHHHHHHHHCCCcEEEEEEC--------------CEEEEEEEHHHHHHHHhhCC--
Confidence 3678999994 56889999999999999999999999999995 48999999999998765421
Q ss_pred CChhhhhcCChhhhccCCCCCceEEeCCCCCHHHHHHHHh-cCCceEEEeccCcchhhhhhhcccccccccCCCCceeee
Q 016003 86 LSPSLALKQPVSVLLPQLLPPLVMHVEPSCSLLEAMDLML-GGAQNLVVPIKNRLSIKRKQQQKLSSSSLTNHNGREFCW 164 (397)
Q Consensus 86 ~~~~~~~~~~V~~lm~~~~~~~~~~V~~~~sL~~al~~m~-~g~~r~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I 164 (397)
....+++++|... ++++.+++++.++++.|. ++.++++|++++ |+.+|+
T Consensus 65 -----~~~~~v~~~m~~~----~~~v~~~~~l~~~~~~~~~~~~~~lpVvd~~---------------------g~~~Gi 114 (128)
T 3gby_A 65 -----TVKEKLGEELLET----VRSYRPGEQLFDNLISVAAAKCSVVPLADED---------------------GRYEGV 114 (128)
T ss_dssp -----CTTCBCCGGGCBC----CCCBCTTSBGGGSHHHHHHCSSSEEEEECTT---------------------CBEEEE
T ss_pred -----cccCcHHHHccCC----CcEECCCCCHHHHHHHHHhCCCcEEEEECCC---------------------CCEEEE
Confidence 1136799999755 889999999999999999 789999998632 468899
Q ss_pred ecHHHHHHHHHh
Q 016003 165 LTQEDIIRFILS 176 (397)
Q Consensus 165 ITq~DIi~~l~~ 176 (397)
||+.|+++++.+
T Consensus 115 it~~dll~~l~~ 126 (128)
T 3gby_A 115 VSRKRILGFLAE 126 (128)
T ss_dssp EEHHHHHHHHHT
T ss_pred EEHHHHHHHHHh
Confidence 999999999864
|
| >3sl7_A CBS domain-containing protein CBSX2; CBS-PAIR protein, redox regulator, plant CBS domain, thiored chloroplast, membrane protein; 1.91A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.53 E-value=1.5e-14 Score=127.61 Aligned_cols=136 Identities=22% Similarity=0.193 Sum_probs=107.0
Q ss_pred cchhhhhhcCCCCeEEEeCChhHHHHHHHHhhCCCceEEEEccCCCCCCCCCCCCCCCeEEEEEehhHHHHHHhhcC---
Q 016003 7 ADEVSDLCLGKPALRALSISAAIADALSALKNSDESFISVWDCNCCSNHRKLGDACECQCVGKVCMVDVICYLCKDS--- 83 (397)
Q Consensus 7 ~~~v~dl~~~k~~li~v~~~~tv~~Al~~L~~~~I~s~PV~d~~~~~~~~~~~~~~~~~~vGiv~~~Dil~~l~~~~--- 83 (397)
..+|+|+|..+.+++++++++|+.+|+++|.++++.++||+|. +++++|+|+..||+.++....
T Consensus 3 ~~~v~dim~~~~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd~-------------~~~~~Givt~~dl~~~~~~~~~~~ 69 (180)
T 3sl7_A 3 GYTVGDFMTPRQNLHVVKPSTSVDDALELLVEKKVTGLPVIDD-------------NWTLVGVVSDYDLLALDSISGRSQ 69 (180)
T ss_dssp CCBHHHHSEEGGGCCCBCTTSBHHHHHHHHHHHTCSEEEEECT-------------TCBEEEEEEHHHHTCC--------
T ss_pred ceeHHHhcCCCCCceeeCCCCcHHHHHHHHHHcCCCeEEEECC-------------CCeEEEEEEHHHHHhhhhhccccC
Confidence 3579999965447999999999999999999999999999996 368999999999985432100
Q ss_pred -----------CCCCh-------hhhhcCChhhhccCCCCCceEEeCCCCCHHHHHHHHh-cCCceEEEeccCcchhhhh
Q 016003 84 -----------NSLSP-------SLALKQPVSVLLPQLLPPLVMHVEPSCSLLEAMDLML-GGAQNLVVPIKNRLSIKRK 144 (397)
Q Consensus 84 -----------~l~~~-------~~~~~~~V~~lm~~~~~~~~~~V~~~~sL~~al~~m~-~g~~r~~V~~~~~~~~~~~ 144 (397)
..... ....+.+|+++|... ++++.++++|.+|++.|. +++++++|++++
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~m~~~----~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~------- 138 (180)
T 3sl7_A 70 NDTNLFPDVDSTWKTFNELQKLISKTYGKVVGDLMTPS----PLVVRDSTNLEDAARLLLETKFRRLPVVDAD------- 138 (180)
T ss_dssp -----------CCCSHHHHHHHHHTTTTCBHHHHSEES----CCCEETTSBHHHHHHHHTTSTTCEEEEECTT-------
T ss_pred CcccccccccchhhhhHHHHHHHhccccccHHHHhCCC----ceEeCCCCcHHHHHHHHHHcCCCEEEEECCC-------
Confidence 00000 122357899999754 788999999999999999 799999998632
Q ss_pred hhcccccccccCCCCceeeeecHHHHHHHHHhccCC
Q 016003 145 QQQKLSSSSLTNHNGREFCWLTQEDIIRFILSSISL 180 (397)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~IITq~DIi~~l~~~~~~ 180 (397)
++.+|+||+.||++++.+....
T Consensus 139 --------------g~~vGiit~~dil~~~~~~~~~ 160 (180)
T 3sl7_A 139 --------------GKLIGILTRGNVVRAALQIKRN 160 (180)
T ss_dssp --------------CBEEEEEEHHHHHHHHHHHHHT
T ss_pred --------------CeEEEEEEHHHHHHHHHHHhhh
Confidence 4688999999999999875443
|
| >2nyc_A Nuclear protein SNF4; bateman2 domain, AMP kinase, protein binding; 1.90A {Saccharomyces cerevisiae} SCOP: d.37.1.1 PDB: 2nye_A | Back alignment and structure |
|---|
Probab=99.53 E-value=4.9e-14 Score=119.59 Aligned_cols=133 Identities=18% Similarity=0.173 Sum_probs=105.7
Q ss_pred ccccchhhh---hhcCCCCeEEEeCChhHHHHHHHHhhCCCceEEEEccCCCCCCCCCCCCCCCeEEEEEehhHHHHHHh
Q 016003 4 SLLADEVSD---LCLGKPALRALSISAAIADALSALKNSDESFISVWDCNCCSNHRKLGDACECQCVGKVCMVDVICYLC 80 (397)
Q Consensus 4 ~~~~~~v~d---l~~~k~~li~v~~~~tv~~Al~~L~~~~I~s~PV~d~~~~~~~~~~~~~~~~~~vGiv~~~Dil~~l~ 80 (397)
.+.+.++++ +| .++++++++++|+.+|++.|.++++.++||+|. +++++|+|+..|++.++.
T Consensus 4 ~~~~~~v~~~~~~~--~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~-------------~~~~~Givt~~dl~~~~~ 68 (144)
T 2nyc_A 4 HFLKIPIGDLNIIT--QDNMKSCQMTTPVIDVIQMLTQGRVSSVPIIDE-------------NGYLINVYEAYDVLGLIK 68 (144)
T ss_dssp GGGGSBGGGSSCCB--CSSCCCBCTTSBHHHHHHHHHHHTCSEEEEECT-------------TCBEEEEEEHHHHHHHHH
T ss_pred chhhcchhhcCCCC--CCCceEECCCCcHHHHHHHHHHcCcceeeEEcC-------------CCcEEEEEcHHHHHHHhc
Confidence 456778999 55 367899999999999999999999999999996 368999999999999876
Q ss_pred hcCCCCChhhhhcCChhhhccCCC--CCceEEeCCCCCHHHHHHHHh-cCCceEEEeccCcchhhhhhhcccccccccCC
Q 016003 81 KDSNSLSPSLALKQPVSVLLPQLL--PPLVMHVEPSCSLLEAMDLML-GGAQNLVVPIKNRLSIKRKQQQKLSSSSLTNH 157 (397)
Q Consensus 81 ~~~~l~~~~~~~~~~V~~lm~~~~--~~~~~~V~~~~sL~~al~~m~-~g~~r~~V~~~~~~~~~~~~~~~~~~~~~~~~ 157 (397)
+.. ......+++++|.... ..+++++.++++|.+|++.|. ++.++++|.+++
T Consensus 69 ~~~-----~~~~~~~v~~~m~~~~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~-------------------- 123 (144)
T 2nyc_A 69 GGI-----YNDLSLSVGEALMRRSDDFEGVYTCTKNDKLSTIMDNIRKARVHRFFVVDDV-------------------- 123 (144)
T ss_dssp TC---------CCSBHHHHHHHCC------CEECTTSBHHHHHHHHHHHTCSEEEEECTT--------------------
T ss_pred ccc-----cccCCccHHHHHhcCccccCCCeEECCCCcHHHHHHHHHHCCCCEEEEECCC--------------------
Confidence 421 1123578999985410 014789999999999999999 799999998632
Q ss_pred CCceeeeecHHHHHHHHHhc
Q 016003 158 NGREFCWLTQEDIIRFILSS 177 (397)
Q Consensus 158 ~~~~~~IITq~DIi~~l~~~ 177 (397)
++.+|+||..||++++.+.
T Consensus 124 -g~~~Giit~~dil~~l~~~ 142 (144)
T 2nyc_A 124 -GRLVGVLTLSDILKYILLG 142 (144)
T ss_dssp -SBEEEEEEHHHHHHHHHHC
T ss_pred -CCEEEEEEHHHHHHHHHhc
Confidence 4678999999999998753
|
| >1y5h_A Hypothetical protein RV2626C; CBS domain, unknown function; 1.50A {Mycobacterium tuberculosis} SCOP: d.37.1.1 PDB: 1xkf_A | Back alignment and structure |
|---|
Probab=99.52 E-value=1.4e-14 Score=121.71 Aligned_cols=124 Identities=14% Similarity=0.167 Sum_probs=102.6
Q ss_pred cccchhhhhhcCCCCeEEEeCChhHHHHHHHHhhCCCceEEEEccCCCCCCCCCCCCCCCeEEEEEehhHHHH-HHhhcC
Q 016003 5 LLADEVSDLCLGKPALRALSISAAIADALSALKNSDESFISVWDCNCCSNHRKLGDACECQCVGKVCMVDVIC-YLCKDS 83 (397)
Q Consensus 5 ~~~~~v~dl~~~k~~li~v~~~~tv~~Al~~L~~~~I~s~PV~d~~~~~~~~~~~~~~~~~~vGiv~~~Dil~-~l~~~~ 83 (397)
+...+|+|+|. ++++++++++|+.+|++.|.++++.++||+|. +++++|+|+..|++. ++.++.
T Consensus 5 ~~~~~v~~im~--~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~-------------~~~~~Givt~~dl~~~~~~~~~ 69 (133)
T 1y5h_A 5 FTMTTARDIMN--AGVTCVGEHETLTAAAQYMREHDIGALPICGD-------------DDRLHGMLTDRDIVIKGLAAGL 69 (133)
T ss_dssp ---CCHHHHSE--ETCCCEETTSBHHHHHHHHHHHTCSEEEEECG-------------GGBEEEEEEHHHHHHTTGGGTC
T ss_pred hhhcCHHHHhc--CCceEeCCCCCHHHHHHHHHHhCCCeEEEECC-------------CCeEEEEEeHHHHHHHHHhcCC
Confidence 45578999995 57889999999999999999999999999985 368999999999994 554422
Q ss_pred CCCChhhhhcCChhhhccCCCCCceEEeCCCCCHHHHHHHHh-cCCceEEEeccCcchhhhhhhcccccccccCCCCcee
Q 016003 84 NSLSPSLALKQPVSVLLPQLLPPLVMHVEPSCSLLEAMDLML-GGAQNLVVPIKNRLSIKRKQQQKLSSSSLTNHNGREF 162 (397)
Q Consensus 84 ~l~~~~~~~~~~V~~lm~~~~~~~~~~V~~~~sL~~al~~m~-~g~~r~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (397)
. ....+++++|... ++++.+++++.+|++.|. ++.++++|.++ ++.+
T Consensus 70 ~------~~~~~v~~~m~~~----~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~----------------------g~~~ 117 (133)
T 1y5h_A 70 D------PNTATAGELARDS----IYYVDANASIQEMLNVMEEHQVRRVPVISE----------------------HRLV 117 (133)
T ss_dssp C------TTTSBHHHHHTTC----CCCEETTCCHHHHHHHHHHHTCSEEEEEET----------------------TEEE
T ss_pred C------ccccCHHHHhcCC----CEEECCCCCHHHHHHHHHHcCCCEEEEEEC----------------------CEEE
Confidence 1 2357899999654 889999999999999999 79999998853 3578
Q ss_pred eeecHHHHHHHHH
Q 016003 163 CWLTQEDIIRFIL 175 (397)
Q Consensus 163 ~IITq~DIi~~l~ 175 (397)
|+||..||++++.
T Consensus 118 Giit~~dil~~l~ 130 (133)
T 1y5h_A 118 GIVTEADIARHLP 130 (133)
T ss_dssp EEEEHHHHHHTCC
T ss_pred EEEEHHHHHHHHH
Confidence 9999999998864
|
| >2j9l_A Chloride channel protein 5; ION channel, ION transport, voltage-gated; HET: ATP; 2.30A {Homo sapiens} SCOP: d.37.1.1 PDB: 2ja3_A* | Back alignment and structure |
|---|
Probab=99.52 E-value=6.4e-14 Score=124.26 Aligned_cols=136 Identities=18% Similarity=0.144 Sum_probs=107.2
Q ss_pred cccccchhhhhhcCCCC--eEEE--eCChhHHHHHHHHhhCCCceEEEE--ccCCCCCCCCCCCCCCCeEEEEEehhHHH
Q 016003 3 VSLLADEVSDLCLGKPA--LRAL--SISAAIADALSALKNSDESFISVW--DCNCCSNHRKLGDACECQCVGKVCMVDVI 76 (397)
Q Consensus 3 ~~~~~~~v~dl~~~k~~--li~v--~~~~tv~~Al~~L~~~~I~s~PV~--d~~~~~~~~~~~~~~~~~~vGiv~~~Dil 76 (397)
.++...+|+|+|....+ ++++ ++++|+.+|+++|.++++.++||+ |. +++++|+|+..|++
T Consensus 6 ~~~~~~~v~dim~~~~~~~~~~v~~~~~~~~~~a~~~~~~~~~~~~pVv~~d~-------------~~~lvGiit~~dl~ 72 (185)
T 2j9l_A 6 EFAHKTLAMDVMKPRRNDPLLTVLTQDSMTVEDVETIISETTYSGFPVVVSRE-------------SQRLVGFVLRRDLI 72 (185)
T ss_dssp ---CCCBHHHHSBSCTTSCCCCCEESSCEEHHHHHHHHHHCCCSEEEEESCTT-------------TCBEEEEEEHHHHH
T ss_pred hhhccCcHHHHhcccccCceEEEecCCCccHHHHHHHHHhcCCCceeEEEECC-------------CCeEEEEEEHHHHH
Confidence 36778899999965422 7778 999999999999999999999999 54 47899999999999
Q ss_pred HHHhhcC----CCCC--------------hhhhhcCChhhhccCCCCCceEEeCCCCCHHHHHHHHh-cCCceEEEeccC
Q 016003 77 CYLCKDS----NSLS--------------PSLALKQPVSVLLPQLLPPLVMHVEPSCSLLEAMDLML-GGAQNLVVPIKN 137 (397)
Q Consensus 77 ~~l~~~~----~l~~--------------~~~~~~~~V~~lm~~~~~~~~~~V~~~~sL~~al~~m~-~g~~r~~V~~~~ 137 (397)
.++.... .+.. .......+|+++|... ++++.++++|.+|++.|. +++++++|.+ +
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~----~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd-~ 147 (185)
T 2j9l_A 73 ISIENARKKQDGVVSTSIIYFTEHSPPLPPYTPPTLKLRNILDLS----PFTVTDLTPMEIVVDIFRKLGLRQCLVTH-N 147 (185)
T ss_dssp HHHHHHHTSCSCCCTTCEEECSSSCCCCCTTCCCCEECGGGEESS----CCEEETTSBHHHHHHHHHHHTCSEEEEEE-T
T ss_pred HHHHhhcccCCCccccceeecccCCcccccccccCccHHHhhCcC----CeEeCCCCCHHHHHHHHHhCCCcEEEEEE-C
Confidence 9876420 0000 0012346799999654 899999999999999999 7999999875 2
Q ss_pred cchhhhhhhcccccccccCCCCceeeeecHHHHHHHHHhc
Q 016003 138 RLSIKRKQQQKLSSSSLTNHNGREFCWLTQEDIIRFILSS 177 (397)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~~~IITq~DIi~~l~~~ 177 (397)
|+.+|+||..||++++.+.
T Consensus 148 ---------------------g~~vGiit~~dll~~l~~~ 166 (185)
T 2j9l_A 148 ---------------------GRLLGIITKKDVLKHIAQM 166 (185)
T ss_dssp ---------------------TEEEEEEEHHHHHHHHHHH
T ss_pred ---------------------CEEEEEEEHHHHHHHHHHh
Confidence 3578999999999999864
|
| >3k2v_A Putative D-arabinose 5-phosphate isomerase; KPSF-like protein, CBS domain, structural genomics, PSI-2, P structure initiative; HET: MSE CMK; 1.95A {Klebsiella pneumoniae subsp} PDB: 3fna_A* | Back alignment and structure |
|---|
Probab=99.51 E-value=4.8e-14 Score=121.35 Aligned_cols=120 Identities=13% Similarity=0.187 Sum_probs=102.4
Q ss_pred chhhhhhcCCCCeEEEeCChhHHHHHHHHhhCCCceEEEEccCCCCCCCCCCCCCCCeEEEEEehhHHHHHHhhcCCCCC
Q 016003 8 DEVSDLCLGKPALRALSISAAIADALSALKNSDESFISVWDCNCCSNHRKLGDACECQCVGKVCMVDVICYLCKDSNSLS 87 (397)
Q Consensus 8 ~~v~dl~~~k~~li~v~~~~tv~~Al~~L~~~~I~s~PV~d~~~~~~~~~~~~~~~~~~vGiv~~~Dil~~l~~~~~l~~ 87 (397)
++|+|+|....+++++++++|+.+|++.|.++++..+||+|. +++++|+|+..||+.++.+..
T Consensus 28 ~~v~dim~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~~Vvd~-------------~~~~~Givt~~dl~~~~~~~~---- 90 (149)
T 3k2v_A 28 LRVNDIMHTGDEIPHVGLQATLRDALLEITRKNLGMTAICDD-------------DMNIIGIFTDGDLRRVFDTGV---- 90 (149)
T ss_dssp SBGGGTSBCGGGSCEECTTCBHHHHHHHHHHHTSSEEEEECT-------------TCBEEEEEEHHHHHHHHCSSS----
T ss_pred cCHHHHhcCCCCCeEECCCCcHHHHHHHHHhCCCcEEEEECC-------------CCcEEEEecHHHHHHHHhcCC----
Confidence 589999953237899999999999999999999999999996 368999999999999886532
Q ss_pred hhhhhcCChhhhccCCCCCceEEeCCCCCHHHHHHHHh-cCCceEEEeccCcchhhhhhhcccccccccCCCCceeeeec
Q 016003 88 PSLALKQPVSVLLPQLLPPLVMHVEPSCSLLEAMDLML-GGAQNLVVPIKNRLSIKRKQQQKLSSSSLTNHNGREFCWLT 166 (397)
Q Consensus 88 ~~~~~~~~V~~lm~~~~~~~~~~V~~~~sL~~al~~m~-~g~~r~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IIT 166 (397)
...+.+++++|... ++++.++++|.+|++.|. +++++++|++++ +.+|+||
T Consensus 91 --~~~~~~v~~~m~~~----~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~----------------------~~~Giit 142 (149)
T 3k2v_A 91 --DMRDASIADVMTRG----GIRIRPGTLAVDALNLMQSRHITCVLVADGD----------------------HLLGVVH 142 (149)
T ss_dssp --CCTTCBHHHHSEES----CCEECTTCBHHHHHHHHHHHTCSEEEEEETT----------------------EEEEEEE
T ss_pred --CcccCcHHHHcCCC----CeEECCCCCHHHHHHHHHHcCCCEEEEecCC----------------------EEEEEEE
Confidence 12467899999755 789999999999999999 799999998632 5689999
Q ss_pred HHHHHH
Q 016003 167 QEDIIR 172 (397)
Q Consensus 167 q~DIi~ 172 (397)
..||++
T Consensus 143 ~~dil~ 148 (149)
T 3k2v_A 143 MHDLLR 148 (149)
T ss_dssp HHHHTC
T ss_pred HHHhhc
Confidence 999874
|
| >3oi8_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADN; 1.99A {Neisseria meningitidis serogroup B} | Back alignment and structure |
|---|
Probab=99.51 E-value=2.2e-14 Score=124.79 Aligned_cols=120 Identities=18% Similarity=0.167 Sum_probs=102.3
Q ss_pred cccchhhhhhcCCCCeEEEeCChhHHHHHHHHhhCCCceEEEEccCCCCCCCCCCCCCCCeEEEEEehhHHHHHHhhcCC
Q 016003 5 LLADEVSDLCLGKPALRALSISAAIADALSALKNSDESFISVWDCNCCSNHRKLGDACECQCVGKVCMVDVICYLCKDSN 84 (397)
Q Consensus 5 ~~~~~v~dl~~~k~~li~v~~~~tv~~Al~~L~~~~I~s~PV~d~~~~~~~~~~~~~~~~~~vGiv~~~Dil~~l~~~~~ 84 (397)
|...+|+|+|....+++++++++|+.+|++.|.++++.++||+|.+ .++++|+|+..|++.++..+
T Consensus 35 l~~~~v~diM~~~~~~~~v~~~~~i~~a~~~m~~~~~~~~pVvd~~------------~~~lvGivt~~dl~~~~~~~-- 100 (156)
T 3oi8_A 35 FSDLEVRDAMITRSRMNVLKENDSIERITAYVIDTAHSRFPVIGED------------KDEVLGILHAKDLLKYMFNP-- 100 (156)
T ss_dssp HTTCBGGGTCEEGGGCCCEETTCCHHHHHHHHHHHCCSEEEEESSS------------TTCEEEEEEGGGGGGGSSCG--
T ss_pred cCCCCHhheeeeHHHeEEECCCCCHHHHHHHHHHCCCCEEEEEcCC------------CCcEEEEEEHHHHHHHHHcC--
Confidence 5678899999654579999999999999999999999999999963 24899999999999876431
Q ss_pred CCChhhhhcCChhhhccCCCCCceEEeCCCCCHHHHHHHHh-cCCceEEEeccCcchhhhhhhcccccccccCCCCceee
Q 016003 85 SLSPSLALKQPVSVLLPQLLPPLVMHVEPSCSLLEAMDLML-GGAQNLVVPIKNRLSIKRKQQQKLSSSSLTNHNGREFC 163 (397)
Q Consensus 85 l~~~~~~~~~~V~~lm~~~~~~~~~~V~~~~sL~~al~~m~-~g~~r~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (397)
.+.+++++|. +++++.+++++.+|++.|. +++++++|++++ |+.+|
T Consensus 101 -------~~~~v~~im~-----~~~~v~~~~~l~~a~~~m~~~~~~~~~Vvd~~---------------------g~~~G 147 (156)
T 3oi8_A 101 -------EQFHLKSILR-----PAVFVPEGKSLTALLKEFREQRNHMAIVIDEY---------------------GGTSG 147 (156)
T ss_dssp -------GGCCHHHHCB-----CCCEEETTSBHHHHHHHHHHTTCCEEEEECTT---------------------SSEEE
T ss_pred -------CcccHHHHcC-----CCEEECCCCCHHHHHHHHHhcCCeEEEEECCC---------------------CCEEE
Confidence 3578999994 2689999999999999999 789999988632 46789
Q ss_pred eecHHHHH
Q 016003 164 WLTQEDII 171 (397)
Q Consensus 164 IITq~DIi 171 (397)
|||..||+
T Consensus 148 ivt~~Dil 155 (156)
T 3oi8_A 148 LVTFEDII 155 (156)
T ss_dssp EEEHHHHC
T ss_pred EEEHHHhc
Confidence 99999986
|
| >1o50_A CBS domain-containing predicted protein TM0935; CBS-domain PAIR fold, structural genomics, joint center for structural genomics, JCSG; 1.87A {Thermotoga maritima} SCOP: d.37.1.1 | Back alignment and structure |
|---|
Probab=99.50 E-value=1.7e-13 Score=118.86 Aligned_cols=131 Identities=15% Similarity=0.114 Sum_probs=105.8
Q ss_pred cccchhhhhhcCCCCeEEEeCChhHHHHHHHHhhCCCce-EEEEccCCCCCCCCCCCCCCCeEEEEEehhHHHHHHhhc-
Q 016003 5 LLADEVSDLCLGKPALRALSISAAIADALSALKNSDESF-ISVWDCNCCSNHRKLGDACECQCVGKVCMVDVICYLCKD- 82 (397)
Q Consensus 5 ~~~~~v~dl~~~k~~li~v~~~~tv~~Al~~L~~~~I~s-~PV~d~~~~~~~~~~~~~~~~~~vGiv~~~Dil~~l~~~- 82 (397)
+...+|+|+| .++++++++++|+.+|++.|.++++.. +||+|. + +++|+|+..||+.++...
T Consensus 13 ~~~~~v~~im--~~~~~~v~~~~tl~ea~~~m~~~~~~~~~~Vvd~-------------~-~~vGivt~~dl~~~~~~~~ 76 (157)
T 1o50_A 13 MKVKDVCKLI--SLKPTVVEEDTPIEEIVDRILEDPVTRTVYVARD-------------N-KLVGMIPVMHLLKVSGFHF 76 (157)
T ss_dssp CBHHHHTTSS--CCCCEEECTTCBHHHHHHHHHHSTTCCEEEEEET-------------T-EEEEEEEHHHHHHHHHHHH
T ss_pred hccccHhhcc--cCCCceECCCCCHHHHHHHHHhCCCCccEEEEEC-------------C-EEEEEEEHHHHHHHHhhhH
Confidence 4567899999 467999999999999999999999999 999995 3 899999999999876410
Q ss_pred -------CCCC-ChhhhhcCChhhhccCCCCCceEEeCCCCCHHHHHHHHh-cCCceEEEeccCcchhhhhhhccccccc
Q 016003 83 -------SNSL-SPSLALKQPVSVLLPQLLPPLVMHVEPSCSLLEAMDLML-GGAQNLVVPIKNRLSIKRKQQQKLSSSS 153 (397)
Q Consensus 83 -------~~l~-~~~~~~~~~V~~lm~~~~~~~~~~V~~~~sL~~al~~m~-~g~~r~~V~~~~~~~~~~~~~~~~~~~~ 153 (397)
.... ........+++++|. . ++++.++++|.+|++.|. +++++++|++++
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~v~~im~----~-~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~---------------- 135 (157)
T 1o50_A 77 FGFIPKEELIRSSMKRLIAKNASEIML----D-PVYVHMDTPLEEALKLMIDNNIQEMPVVDEK---------------- 135 (157)
T ss_dssp HCCCC-------CCCCCSSCBHHHHCB----C-CCCBCTTSBHHHHHHHHHHHTCSEEEEECTT----------------
T ss_pred HhhhccHHHHHHHHHHHcCCcHHHHcC----C-CeEECCCCCHHHHHHHHHHCCCcEEEEEcCC----------------
Confidence 0000 001234578999995 2 788999999999999999 799999998632
Q ss_pred ccCCCCceeeeecHHHHHHHHHhc
Q 016003 154 LTNHNGREFCWLTQEDIIRFILSS 177 (397)
Q Consensus 154 ~~~~~~~~~~IITq~DIi~~l~~~ 177 (397)
++.+|+||+.||++++.+.
T Consensus 136 -----g~~vGiit~~dll~~l~~~ 154 (157)
T 1o50_A 136 -----GEIVGDLNSLEILLALWKG 154 (157)
T ss_dssp -----SCEEEEEEHHHHHHHHHHS
T ss_pred -----CEEEEEEEHHHHHHHHHHh
Confidence 4678999999999998754
|
| >2pfi_A Chloride channel protein CLC-Ka; cystathionine beta synthetase (CBS) domains containing protein, transport protein; 1.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.49 E-value=2e-13 Score=118.48 Aligned_cols=137 Identities=15% Similarity=0.141 Sum_probs=107.1
Q ss_pred cccchhhhhhcCCCCeEEEeCChhHHHHHHHHhhCCCceEEEEccCCCCCCCCCCCCCCCeEEEEEehhHHHHHHhhcCC
Q 016003 5 LLADEVSDLCLGKPALRALSISAAIADALSALKNSDESFISVWDCNCCSNHRKLGDACECQCVGKVCMVDVICYLCKDSN 84 (397)
Q Consensus 5 ~~~~~v~dl~~~k~~li~v~~~~tv~~Al~~L~~~~I~s~PV~d~~~~~~~~~~~~~~~~~~vGiv~~~Dil~~l~~~~~ 84 (397)
+...+|+|+|. ++++++++++|+.+|++.|.++++.++||+|.+. +++++|+|+..||+.++.....
T Consensus 10 ~~~~~v~dim~--~~~~~v~~~~~~~~a~~~~~~~~~~~~pVvd~~~-----------~~~~~Givt~~dl~~~~~~~~~ 76 (164)
T 2pfi_A 10 SHHVRVEHFMN--HSITTLAKDTPLEEVVKVVTSTDVTEYPLVESTE-----------SQILVGIVQRAQLVQALQAEPP 76 (164)
T ss_dssp CCSCBHHHHCB--CCCCCEETTCBHHHHHHHHHTCCCSEEEEESCTT-----------TCBEEEEEEHHHHHHHHHC---
T ss_pred ccCCCHHHHcC--CCCeEECCCCcHHHHHHHHHhCCCCceeEEecCC-----------CCEEEEEEEHHHHHHHHHhhcc
Confidence 34678999994 5789999999999999999999999999999511 2689999999999998864211
Q ss_pred CCChhhhhcCChhhhccCCCC-Cc-eEEeCCCCCHHHHHHHHh-cCCceEEEeccCcchhhhhhhcccccccccCCCCce
Q 016003 85 SLSPSLALKQPVSVLLPQLLP-PL-VMHVEPSCSLLEAMDLML-GGAQNLVVPIKNRLSIKRKQQQKLSSSSLTNHNGRE 161 (397)
Q Consensus 85 l~~~~~~~~~~V~~lm~~~~~-~~-~~~V~~~~sL~~al~~m~-~g~~r~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (397)
. .......++.++|..... .+ ++++.+++++.+|++.|. +++++++|.++ ++.
T Consensus 77 ~--~~~~~~~~v~~~m~~~~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~----------------------g~l 132 (164)
T 2pfi_A 77 S--RAPGHQQCLQDILARGCPTEPVTLTLFSETTLHQAQNLFKLLNLQSLFVTSR----------------------GRA 132 (164)
T ss_dssp ------CCCCBHHHHHHTTCCCBCCCCCEETTCBHHHHHHHHHHTTCSEEEEEET----------------------TEE
T ss_pred c--cCCcccchhhhhhcccccccCCceEECCCCcHHHHHHHHHHhCCCEEEEEEC----------------------CEE
Confidence 0 001234679999964311 12 678999999999999999 79999998862 357
Q ss_pred eeeecHHHHHHHHHhcc
Q 016003 162 FCWLTQEDIIRFILSSI 178 (397)
Q Consensus 162 ~~IITq~DIi~~l~~~~ 178 (397)
+|+||+.||++++.+..
T Consensus 133 ~Giit~~dil~~~~~~~ 149 (164)
T 2pfi_A 133 VGCVSWVEMKKAISNLT 149 (164)
T ss_dssp EEEEEHHHHHHHHHHHH
T ss_pred EEEEEHHHHHHHHHhhh
Confidence 89999999999998643
|
| >2zy9_A Mg2+ transporter MGTE; membrane protien, metal transport; 2.94A {Thermus thermophilus} PDB: 2yvx_A | Back alignment and structure |
|---|
Probab=99.49 E-value=1.9e-13 Score=140.35 Aligned_cols=121 Identities=21% Similarity=0.243 Sum_probs=100.5
Q ss_pred cCCccccCCCCcCeEEEeCCCcHHHHHHHHHhc-----CCCCCEEEEEcCCCcEEEeeccCcccCcchhHHHHHhhcChh
Q 016003 186 ALSIDSLGIISTDVVAVDYHSPASLALEAISRS-----LFDQTSVAVVDSDGFLIGEISPSTLGCCDETVAAAITTLSAG 260 (397)
Q Consensus 186 ~~ti~~L~~~~~~v~tv~~~~~~~~a~~~m~~~-----~i~~s~vpVVd~~g~lvG~is~~dl~~~~~~~~~~~~~ls~~ 260 (397)
..++++ +|+++++++.+++++.+|++.|.++ ++ +.+||+|++|+++|+| +.+
T Consensus 154 ~~~v~~--iM~~~~v~v~~~~tv~ea~~~~~~~~~~~~~~--~~ipVvd~~~~lvGiV-------------------t~~ 210 (473)
T 2zy9_A 154 EDEAGG--LMTPEYVAVREGMTVEEVLRFLRRAAPDAETI--YYIYVVDEKGRLKGVL-------------------SLR 210 (473)
T ss_dssp TTBSTT--TCBSCEEEECTTCBHHHHHHHHHHHGGGCSEE--EEEEEECTTSBEEEEE-------------------EHH
T ss_pred CCCHHH--hCCCCceEeCCCCcHHHHHHHHHhccCCcCce--eEEEEECCCCcEEEEE-------------------EHH
Confidence 445554 8999999999999999999999886 47 9999999999999994 466
Q ss_pred hhhhhhccCCCCchhHHHHHHHhhhcchhhhhhhhccccCCCCCCCCCCCCCccchhhhccccCCCccccccchhhhhcC
Q 016003 261 DLMAYIDCGGPPEDLVRVVKERLKDKGLEGMLEHFDMSSSLMPYLSTSSSSDEESTATSKLTRSGKHSRSMSYSARMVRR 340 (397)
Q Consensus 261 Dl~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (397)
|++..-. ... ..++|+
T Consensus 211 Dll~~~~--------------------------------------------------------~~~--------v~dim~ 226 (473)
T 2zy9_A 211 DLIVADP--------------------------------------------------------RTR--------VAEIMN 226 (473)
T ss_dssp HHHHSCT--------------------------------------------------------TSB--------GGGTSB
T ss_pred HHhcCCC--------------------------------------------------------CCc--------HHHHhC
Confidence 6653100 000 113577
Q ss_pred CccEEeCCCCcHHHHHHHHHHcCCcEEEEEcCCCcEEEEEehHHHHHHHHHHH
Q 016003 341 AEAIVCHPTSSLMAVMIQAIAHRVTYVWVIEDDCTLTGIVTFSDLLKVFRKHL 393 (397)
Q Consensus 341 ~~~it~~~~~sl~~v~~~m~~~~i~rl~VVd~~~~lvGvVt~~DIl~~l~~~~ 393 (397)
++++++++++++.+++++|.+++++++||||++|+++|+||..||++.+.++.
T Consensus 227 ~~~~~v~~~~~l~ea~~~m~~~~~~~lpVVDe~g~lvGiIT~~Dil~~i~~e~ 279 (473)
T 2zy9_A 227 PKVVYVRTDTDQEEVARLMADYDFTVLPVVDEEGRLVGIVTVDDVLDVLEAEA 279 (473)
T ss_dssp SSCCCEESSSBHHHHHHHHHHHTCSEEEEECTTSBEEEEEEHHHHHHHHHHHH
T ss_pred CCCeEEeCCCcHHHHHHHHHhcCCcEEEEEcCCCEEEEEEehHhhHHHHHHHh
Confidence 89999999999999999999999999999999999999999999999987653
|
| >3org_A CMCLC; transporter, transport protein; 3.50A {Cyanidioschyzon merolae} | Back alignment and structure |
|---|
Probab=99.48 E-value=9.6e-15 Score=155.02 Aligned_cols=174 Identities=17% Similarity=0.221 Sum_probs=102.1
Q ss_pred cCCccccCCCC--cCeEEEeCCCcHHHHHHHHH-hcCCCCCEEEEEcCCCcEEEeeccCcccCcchh-HHHHHhhcChhh
Q 016003 186 ALSIDSLGIIS--TDVVAVDYHSPASLALEAIS-RSLFDQTSVAVVDSDGFLIGEISPSTLGCCDET-VAAAITTLSAGD 261 (397)
Q Consensus 186 ~~ti~~L~~~~--~~v~tv~~~~~~~~a~~~m~-~~~i~~s~vpVVd~~g~lvG~is~~dl~~~~~~-~~~~~~~ls~~D 261 (397)
..++++ +|+ ++++++++++++.|+.+.|. ++++ +++||||++|+++|+||.+||.+...+ .......++..+
T Consensus 452 ~~~V~d--iM~p~~~v~~v~~~~t~~e~~~~~~~~~~~--~~~PVvd~~~~lvGiVt~~DL~~~l~~~~~~~~~~~~~~~ 527 (632)
T 3org_A 452 EMTARE--IMHPIEGEPHLFPDSEPQHIKGILEKFPNR--LVFPVIDANGYLLGAISRKEIVDRLQHVLEDVPEPIAGHR 527 (632)
T ss_dssp TSBHHH--HCBCTTTSCCBCSSSCHHHHHHHHHHSTTC--CEECBBCTTCBBCCEESHHHHTTTTTTC------------
T ss_pred cCcHHH--HhhcCCCceEecCCCcHHHHHHHHHhcCCc--ceEEEEecCCeEEEEEEHHHHHHHHHHHhhhccccccccc
Confidence 445555 799 89999999999999999999 7999 999999999999999888777763211 000000000000
Q ss_pred hhhhhccCCCCchhHHHHHHHhhhcchhhhhhhhccccCCCCCCCCCCCCCccchhhhccccCCCccccccchhhhhcCC
Q 016003 262 LMAYIDCGGPPEDLVRVVKERLKDKGLEGMLEHFDMSSSLMPYLSTSSSSDEESTATSKLTRSGKHSRSMSYSARMVRRA 341 (397)
Q Consensus 262 l~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (397)
.....+ .+++.+ .+....+. .| ... .....+ +..... .......++|++
T Consensus 528 ~~~~~~----~~~l~~---------~~~~~~~~-------~~----~~~--~~~~~e----~~~~~~-~~~~~v~~iMt~ 576 (632)
T 3org_A 528 TLVLLD----AADLSE---------NIEGLVDE-------TP----SGE--HSSKGK----RTATVL-EPTSSLVVPCDV 576 (632)
T ss_dssp --------------------------------------------------------------------------CCSCCC
T ss_pred ceeccC----HHHHHh---------hcccCCCC-------Cc----ccc--hhhhcc----cceEee-ccccccchhhcC
Confidence 000000 000000 00000000 00 000 000000 000000 000113357899
Q ss_pred ccEEeCCCCcHHHHHHHHHHcCCcEEEEEcCCCcEEEEEehHHHHHHHHHHHhh
Q 016003 342 EAIVCHPTSSLMAVMIQAIAHRVTYVWVIEDDCTLTGIVTFSDLLKVFRKHLET 395 (397)
Q Consensus 342 ~~it~~~~~sl~~v~~~m~~~~i~rl~VVd~~~~lvGvVt~~DIl~~l~~~~~~ 395 (397)
+++|+++++++.+++++|.++++|++||+ ++|+++||||++||++++.+.++.
T Consensus 577 ~pitV~~~~~l~ea~~~M~~~~i~~lpVv-e~G~lvGIVT~~Dll~~~~~~~~~ 629 (632)
T 3org_A 577 SPIVVTSYSLVRQLHFLFVMLMPSMIYVT-ERGKLVGIVEREDVAYGYSNSLEV 629 (632)
T ss_dssp CCCEEETTCBHHHHHHHHHHTCCSEEEEE-ETTEEEEEEEGGGTEECCCC----
T ss_pred CCceecCCCcHHHHHHHHHhcCCCEEEEE-ECCEEEEEEehhhHHHHHhhhHHH
Confidence 99999999999999999999999999999 668999999999999987766553
|
| >1pvm_A Conserved hypothetical protein TA0289; structural genomics, CBS domain, PSI, protein structure initiative; 1.50A {Thermoplasma acidophilum dsm 1728} SCOP: d.37.1.1 g.41.13.1 PDB: 2qh1_A | Back alignment and structure |
|---|
Probab=99.48 E-value=1.5e-13 Score=122.57 Aligned_cols=125 Identities=14% Similarity=0.190 Sum_probs=105.6
Q ss_pred cchhhhhhcCCCCeEEEeCChhHHHHHHHHhhCCCceEEEEccCCCCCCCCCCCCCCCeEEEEEehhHHHHHHhhcCCCC
Q 016003 7 ADEVSDLCLGKPALRALSISAAIADALSALKNSDESFISVWDCNCCSNHRKLGDACECQCVGKVCMVDVICYLCKDSNSL 86 (397)
Q Consensus 7 ~~~v~dl~~~k~~li~v~~~~tv~~Al~~L~~~~I~s~PV~d~~~~~~~~~~~~~~~~~~vGiv~~~Dil~~l~~~~~l~ 86 (397)
..+|+|+|. ++++++++++|+.+|+++|.++++.++||+|.+ ++++|+|+..||+.++.....
T Consensus 8 ~~~v~~im~--~~~~~v~~~~~l~ea~~~~~~~~~~~~pVvd~~-------------g~~vGivt~~dl~~~~~~~~~-- 70 (184)
T 1pvm_A 8 FMRVEKIMN--SNFKTVNWNTTVFDAVKIMNENHLYGLVVKDDN-------------GNDVGLLSERSIIKRFIPRNK-- 70 (184)
T ss_dssp CCBGGGTSB--TTCCEEETTCBHHHHHHHHHHHTCCEEEEECTT-------------SCEEEEEEHHHHHHHTGGGCC--
T ss_pred ccCHHHhcC--CCCeEECCCCcHHHHHHHHHHcCCCEEEEEcCC-------------CcEEEEEeHHHHHHHHhhccc--
Confidence 478999994 678999999999999999999999999999853 689999999999998764211
Q ss_pred ChhhhhcCChhhhccCCCCCceEEeCCCCCHHHHHHHHh-cCCceEEEeccCcchhhhhhhcccccccccCCCCceeeee
Q 016003 87 SPSLALKQPVSVLLPQLLPPLVMHVEPSCSLLEAMDLML-GGAQNLVVPIKNRLSIKRKQQQKLSSSSLTNHNGREFCWL 165 (397)
Q Consensus 87 ~~~~~~~~~V~~lm~~~~~~~~~~V~~~~sL~~al~~m~-~g~~r~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~II 165 (397)
.....+++++|... ++++.+++++.+|++.|. ++.++++|++++ ++.+|+|
T Consensus 71 ---~~~~~~v~~im~~~----~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~---------------------g~~~Giv 122 (184)
T 1pvm_A 71 ---KPDEVPIRLVMRKP----IPKVKSDYDVKDVAAYLSENGLERCAVVDDP---------------------GRVVGIV 122 (184)
T ss_dssp ---CGGGSBGGGTSBSS----CCEEETTCBHHHHHHHHHHHTCSEEEEECTT---------------------CCEEEEE
T ss_pred ---CcccCCHHHHhCCC----CcEECCCCCHHHHHHHHHHcCCcEEEEEcCC---------------------CeEEEEE
Confidence 22356899999754 889999999999999999 799999998632 4678999
Q ss_pred cHHHHHHHHHh
Q 016003 166 TQEDIIRFILS 176 (397)
Q Consensus 166 Tq~DIi~~l~~ 176 (397)
|..||++++.+
T Consensus 123 t~~dll~~~~~ 133 (184)
T 1pvm_A 123 TLTDLSRYLSR 133 (184)
T ss_dssp EHHHHTTTSCH
T ss_pred EHHHHHHHHHh
Confidence 99999987643
|
| >3pc3_A CG1753, isoform A; CBS, synthase, PLP, heme, aminoacrylate, lyase; HET: HEM P1T; 1.55A {Drosophila melanogaster} PDB: 3pc2_A* 3pc4_A* | Back alignment and structure |
|---|
Probab=99.45 E-value=9.7e-14 Score=144.29 Aligned_cols=125 Identities=15% Similarity=0.142 Sum_probs=100.2
Q ss_pred cCCccccCCCCcCeEEEeCC-CcHHHHHHHHHhcCCCCCEEEEEc-CCCcEEEeeccCcccCcchhHHHHHhhcChhhhh
Q 016003 186 ALSIDSLGIISTDVVAVDYH-SPASLALEAISRSLFDQTSVAVVD-SDGFLIGEISPSTLGCCDETVAAAITTLSAGDLM 263 (397)
Q Consensus 186 ~~ti~~L~~~~~~v~tv~~~-~~~~~a~~~m~~~~i~~s~vpVVd-~~g~lvG~is~~dl~~~~~~~~~~~~~ls~~Dl~ 263 (397)
..++++ +|+++++++.++ +++.+|+++|.++++ +++||+| ++|+++|+ +|.+||+
T Consensus 383 ~~~V~d--iM~~~~vtv~~~~~tv~ea~~~m~~~~~--~~lpVvd~~~g~lvGi-------------------Vt~~Dll 439 (527)
T 3pc3_A 383 SLAIAE--LELPAPPVILKSDATVGEAIALMKKHRV--DQLPVVDQDDGSVLGV-------------------VGQETLI 439 (527)
T ss_dssp TSBGGG--GCCCCCSCCEETTCBHHHHHHHHHHHTC--SEEEEECTTTCCEEEE-------------------EEHHHHH
T ss_pred CCcHHH--hCcCCCeEEcCCCCcHHHHHHHHHHcCC--CeEEEEECCCCEEEEE-------------------EEHHHHH
Confidence 566766 799999999999 999999999999999 9999999 78999999 5567776
Q ss_pred hhhccCCCCchhHHHHHHHhhhcchhhhhhhhccccCCCCCCCCCCCCCccchhhhccccCCCccccccchhhhhcCCcc
Q 016003 264 AYIDCGGPPEDLVRVVKERLKDKGLEGMLEHFDMSSSLMPYLSTSSSSDEESTATSKLTRSGKHSRSMSYSARMVRRAEA 343 (397)
Q Consensus 264 ~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (397)
..+.. . . . . . ..+..++|++++
T Consensus 440 ~~l~~-------------~----~--------~-----~--------------------~--------~~~V~~im~~~~ 461 (527)
T 3pc3_A 440 TQIVS-------------M----N--------R-----Q--------------------Q--------SDPAIKALNKRV 461 (527)
T ss_dssp HHHHH-------------H----C--------C-----C--------------------T--------TSBGGGGEETTC
T ss_pred HHHHh-------------c----c--------C-----c--------------------C--------CCcHHHHhcCCC
Confidence 52210 0 0 0 0 0 001124688899
Q ss_pred EEeCCCCcHHHHHHHHHHcCCcEEEEEcCC----CcEEEEEehHHHHHHHHHHH
Q 016003 344 IVCHPTSSLMAVMIQAIAHRVTYVWVIEDD----CTLTGIVTFSDLLKVFRKHL 393 (397)
Q Consensus 344 it~~~~~sl~~v~~~m~~~~i~rl~VVd~~----~~lvGvVt~~DIl~~l~~~~ 393 (397)
++|++++++.+++++|.++++ +||||++ |+++||||+.||++++.++.
T Consensus 462 ~~v~~~~~l~~a~~~m~~~~~--~pVVd~~~~~~g~lvGIVT~~Dll~~l~~~~ 513 (527)
T 3pc3_A 462 IRLNESEILGKLARVLEVDPS--VLILGKNPAGKVELKALATKLDVTTFIAAGK 513 (527)
T ss_dssp CEEETTSBHHHHHHHHTTCSE--EEEEEECSSSCEEEEEEEEHHHHHHHHHTCC
T ss_pred eEECCCCcHHHHHHHHhhCCE--EEEEeCCcccCCeEEEEEEHHHHHHHHHhcc
Confidence 999999999999999987775 7999985 89999999999999998753
|
| >2d4z_A Chloride channel protein; CLC chloride channel cytoplasmic domain, CBS domains, ION CH regulatory subunit, transport protein; 3.10A {Torpedo marmorata} SCOP: d.37.1.1 | Back alignment and structure |
|---|
Probab=99.43 E-value=4.4e-13 Score=126.48 Aligned_cols=133 Identities=15% Similarity=0.138 Sum_probs=103.0
Q ss_pred ccccchhhhhhcCCCCeEEEeCChhHHHHHHHHhhCCCceEEEEccCCCCCCCCCCCCCCCeEEEEEehhHHHHHHhhc-
Q 016003 4 SLLADEVSDLCLGKPALRALSISAAIADALSALKNSDESFISVWDCNCCSNHRKLGDACECQCVGKVCMVDVICYLCKD- 82 (397)
Q Consensus 4 ~~~~~~v~dl~~~k~~li~v~~~~tv~~Al~~L~~~~I~s~PV~d~~~~~~~~~~~~~~~~~~vGiv~~~Dil~~l~~~- 82 (397)
...+++|+|+| +++++++.+++++.+|.++|.++++.++||+|..+ +++++|+|+..||+..+...
T Consensus 9 ~~~~~~v~diM--t~~vvtv~~~~tv~~~~~lm~~~~~~~~PVVd~~~-----------~~~LvGiIt~~dl~~~l~~~~ 75 (250)
T 2d4z_A 9 NKYNIQVGDIM--VRDVTSIASTSTYGDLLHVLRQTKLKFFPFVDTPD-----------TNTLLGSIDRTEVEGLLQRRI 75 (250)
T ss_dssp CCSSCBTTSSS--BSSCCCEETTCBHHHHHHHHHHCCCSEEEEESCTT-----------TCBEEEEEEHHHHHHHHHHHH
T ss_pred ccCCCChHHhc--CCCCeEECCCCCHHHHHHHHHhcCCCEEEEEecCC-----------CCeEEEEEEHHHHHHHHHHhh
Confidence 34578899999 46899999999999999999999999999999632 26899999999999876521
Q ss_pred --CCC-------------------------------CCh-----------------------------------------
Q 016003 83 --SNS-------------------------------LSP----------------------------------------- 88 (397)
Q Consensus 83 --~~l-------------------------------~~~----------------------------------------- 88 (397)
... .+.
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 155 (250)
T 2d4z_A 76 SAYRRQPAAAAEADEEGRNGETGASFTGEAESSFAYIDQEDAEGQQREGLEAVKVQTEDPRPPSPVPAEEPTQTSGIYQK 155 (250)
T ss_dssp HTTSSSCCCCCCBCCC----------------------------------------------------------------
T ss_pred hhhhhhhhhhhcccccccccccccccccCCcceeeeccccccccccccCccccCCcccCCcccccccccccccccccccc
Confidence 000 000
Q ss_pred -------------------------hhhhcCCh--h-hhccCCCCCceEEeCCCCCHHHHHHHHh-cCCceEEEeccCcc
Q 016003 89 -------------------------SLALKQPV--S-VLLPQLLPPLVMHVEPSCSLLEAMDLML-GGAQNLVVPIKNRL 139 (397)
Q Consensus 89 -------------------------~~~~~~~V--~-~lm~~~~~~~~~~V~~~~sL~~al~~m~-~g~~r~~V~~~~~~ 139 (397)
...+..+| + .+|+.+ +++|.++++|.++..+|. .|+++++|...
T Consensus 156 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~Vdl~~~~md~s----P~tv~~~tsL~~v~~LF~~lglr~l~V~~~--- 228 (250)
T 2d4z_A 156 KQKGTGQVASRFEEMLTLEEIYRWEQREKNVVVNFETCRIDQS----PFQLVEGTSLQKTHTLFSLLGLDRAYVTSM--- 228 (250)
T ss_dssp -----------CCSCCBHHHHHHHHHHHTTCBCCTTSSCEECC----SCCBCTTCBHHHHHHHHHHHTCSEEEEEET---
T ss_pred ccccccccCcccccccChhhhhhHHHHhcCceeccccccccCC----CeEECCCCcHHHHHHHHHHhCCeEEEEEEC---
Confidence 00022333 2 245544 788999999999999999 79999999852
Q ss_pred hhhhhhhcccccccccCCCCceeeeecHHHHHHHHH
Q 016003 140 SIKRKQQQKLSSSSLTNHNGREFCWLTQEDIIRFIL 175 (397)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~IITq~DIi~~l~ 175 (397)
|+++||||..||++.+.
T Consensus 229 -------------------GrLVGIVTrkDl~kai~ 245 (250)
T 2d4z_A 229 -------------------GKLVGVVALAEIQAAIE 245 (250)
T ss_dssp -------------------TEEEEEEEHHHHHHHHH
T ss_pred -------------------CEEEEEEEHHHHHHHHH
Confidence 47899999999999986
|
| >3kxr_A Magnesium transporter, putative; cystathionine beta-synthase, Mg2+ transporter, structural GE PSI-2, protein structure initiative; 2.41A {Shewanella oneidensis mr-1} | Back alignment and structure |
|---|
Probab=99.42 E-value=1.1e-12 Score=119.78 Aligned_cols=121 Identities=17% Similarity=0.154 Sum_probs=104.4
Q ss_pred cccchhhhhhcCCCCeEEEeCChhHHHHHHHHhhC---CCceEEEEccCCCCCCCCCCCCCCCeEEEEEehhHHHHHHhh
Q 016003 5 LLADEVSDLCLGKPALRALSISAAIADALSALKNS---DESFISVWDCNCCSNHRKLGDACECQCVGKVCMVDVICYLCK 81 (397)
Q Consensus 5 ~~~~~v~dl~~~k~~li~v~~~~tv~~Al~~L~~~---~I~s~PV~d~~~~~~~~~~~~~~~~~~vGiv~~~Dil~~l~~ 81 (397)
+...+++++| .++++++++++|+.+|++.|.++ ++..+||+|. +++++|+|+..|++..
T Consensus 51 ~~~~~v~~iM--~~~~~~v~~~~tv~eal~~~~~~~~~~~~~~~Vvd~-------------~~~lvGivt~~dll~~--- 112 (205)
T 3kxr_A 51 YSENEIGRYT--DHQMLVLSDKATVAQAQRFFRRIELDCNDNLFIVDE-------------ADKYLGTVRRYDIFKH--- 112 (205)
T ss_dssp SCTTCGGGGC--BCCCCEEETTCBHHHHHHHHHHCCCTTCCEEEEECT-------------TCBEEEEEEHHHHTTS---
T ss_pred CCcchHHhhc--cCceEEECCCCcHHHHHHHHHhhCccCeeEEEEEcC-------------CCeEEEEEEHHHHHhC---
Confidence 4567899999 46899999999999999999998 8999999996 3689999999998742
Q ss_pred cCCCCChhhhhcCChhhhccCCCCCceEEeCCCCCHHHHHHHHh-cCCceEEEeccCcchhhhhhhcccccccccCCCCc
Q 016003 82 DSNSLSPSLALKQPVSVLLPQLLPPLVMHVEPSCSLLEAMDLML-GGAQNLVVPIKNRLSIKRKQQQKLSSSSLTNHNGR 160 (397)
Q Consensus 82 ~~~l~~~~~~~~~~V~~lm~~~~~~~~~~V~~~~sL~~al~~m~-~g~~r~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (397)
..+.+|+++|... ++++.+++++.+|++.|. ++++++||++++ |+
T Consensus 113 ---------~~~~~v~~im~~~----~~~v~~~~~l~~a~~~m~~~~~~~lpVVD~~---------------------g~ 158 (205)
T 3kxr_A 113 ---------EPHEPLISLLSED----SRALTANTTLLDAAEAIEHSREIELPVIDDA---------------------GE 158 (205)
T ss_dssp ---------CTTSBGGGGCCSS----CCCEETTSCHHHHHHHHHTSSCSEEEEECTT---------------------SB
T ss_pred ---------CCcchHHHHhcCC----CeEECCCCCHHHHHHHHHhcCCCEEEEEcCC---------------------Ce
Confidence 1246899999755 889999999999999999 799999998632 46
Q ss_pred eeeeecHHHHHHHHHhc
Q 016003 161 EFCWLTQEDIIRFILSS 177 (397)
Q Consensus 161 ~~~IITq~DIi~~l~~~ 177 (397)
.+||||..||++.+.+.
T Consensus 159 lvGiIT~~Dil~~i~~e 175 (205)
T 3kxr_A 159 LIGRVTLRAATALVREH 175 (205)
T ss_dssp EEEEEEHHHHHHHHHHH
T ss_pred EEEEEEHHHHHHHHHHH
Confidence 88999999999999864
|
| >3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A* | Back alignment and structure |
|---|
Probab=99.40 E-value=8.6e-13 Score=136.55 Aligned_cols=114 Identities=18% Similarity=0.180 Sum_probs=96.2
Q ss_pred CCCcCeEEEeCCCcHHHHHHHHHhcCCCCCEEEEEcC--CCcEEEeeccCcccCcchhHHHHHhhcChhhhhhhhccCCC
Q 016003 194 IISTDVVAVDYHSPASLALEAISRSLFDQTSVAVVDS--DGFLIGEISPSTLGCCDETVAAAITTLSAGDLMAYIDCGGP 271 (397)
Q Consensus 194 ~~~~~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~--~g~lvG~is~~dl~~~~~~~~~~~~~ls~~Dl~~~~~~~~~ 271 (397)
.|..+++++.+++++.+|+++|.++++ +++||+|+ +|+++|+| +.+|++...+.
T Consensus 118 ~m~~d~v~l~~~~tv~ea~~~m~~~~~--s~~pVvd~g~~~~lvGiV-------------------t~rDl~~~~~~--- 173 (511)
T 3usb_A 118 GVISDPFFLTPEHQVYDAEHLMGKYRI--SGVPVVNNLDERKLVGII-------------------TNRDMRFIQDY--- 173 (511)
T ss_dssp CSSSSCCCBCTTSBHHHHHHHHHHHCC--SEEEEESCTTTCBEEEEE-------------------EHHHHTTCCCS---
T ss_pred ccccCCEEECCCCCHHHHHHHHHHcCC--cEEEEEecCCCCEEEEEE-------------------EehHhhhhccC---
Confidence 577889999999999999999999999 99999998 89999994 56666430000
Q ss_pred CchhHHHHHHHhhhcchhhhhhhhccccCCCCCCCCCCCCCccchhhhccccCCCccccccchhhhhcCC-ccEEeCCCC
Q 016003 272 PEDLVRVVKERLKDKGLEGMLEHFDMSSSLMPYLSTSSSSDEESTATSKLTRSGKHSRSMSYSARMVRRA-EAIVCHPTS 350 (397)
Q Consensus 272 ~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~it~~~~~ 350 (397)
. ....++|++ +++|++++.
T Consensus 174 ----------------------------------------------------~--------~~V~~vM~~~~~vtv~~~~ 193 (511)
T 3usb_A 174 ----------------------------------------------------S--------IKISDVMTKEQLITAPVGT 193 (511)
T ss_dssp ----------------------------------------------------S--------SBHHHHCCCCCCCCEETTC
T ss_pred ----------------------------------------------------C--------CcHHHhcccCCCEEECCCC
Confidence 0 001235676 999999999
Q ss_pred cHHHHHHHHHHcCCcEEEEEcCCCcEEEEEehHHHHHHHHH
Q 016003 351 SLMAVMIQAIAHRVTYVWVIEDDCTLTGIVTFSDLLKVFRK 391 (397)
Q Consensus 351 sl~~v~~~m~~~~i~rl~VVd~~~~lvGvVt~~DIl~~l~~ 391 (397)
++.++++.|.+++++++||||++|+++|+||+.||++.+..
T Consensus 194 ~l~eal~~m~~~~i~~lpVVDe~g~l~GiIT~~Dil~~~~~ 234 (511)
T 3usb_A 194 TLSEAEKILQKYKIEKLPLVDNNGVLQGLITIKDIEKVIEF 234 (511)
T ss_dssp CHHHHHHHHHHHTCSEEEEECTTSBEEEEEEHHHHHHHHHC
T ss_pred CHHHHHHHHHHcCCCEEEEEeCCCCEeeeccHHHHHHhhhc
Confidence 99999999999999999999999999999999999998854
|
| >1zfj_A Inosine monophosphate dehydrogenase; IMPDH, CBS domains, oxidoreductase; HET: IMP; 1.90A {Streptococcus pyogenes} SCOP: c.1.5.1 d.37.1.1 | Back alignment and structure |
|---|
Probab=99.35 E-value=3.3e-12 Score=131.56 Aligned_cols=114 Identities=18% Similarity=0.212 Sum_probs=96.4
Q ss_pred CCCcCeEEEeCCCcHHHHHHHHHhcCCCCCEEEEEc--CCCcEEEeeccCcccCcchhHHHHHhhcChhhhhhhhccCCC
Q 016003 194 IISTDVVAVDYHSPASLALEAISRSLFDQTSVAVVD--SDGFLIGEISPSTLGCCDETVAAAITTLSAGDLMAYIDCGGP 271 (397)
Q Consensus 194 ~~~~~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd--~~g~lvG~is~~dl~~~~~~~~~~~~~ls~~Dl~~~~~~~~~ 271 (397)
+|+.+++++.+++++.+|++.|.++++ +++||+| ++++++|+| +.+|++...+.
T Consensus 95 im~~~~~~v~~~~tv~ea~~~m~~~~~--~~~pVvd~~~~~~lvGiv-------------------t~~Dl~~~~~~--- 150 (491)
T 1zfj_A 95 GVIIDPFFLTPEHKVSEAEELMQRYRI--SGVPIVETLANRKLVGII-------------------TNRDMRFISDY--- 150 (491)
T ss_dssp TTSSSCCCBCSSSBHHHHHHHHHHTTC--SEEEEESCTTTCBEEEEE-------------------EHHHHHHCSCS---
T ss_pred cCcCCCeEECCCCcHHHHHHHHHHcCC--CEEEEEEeCCCCEEEEEE-------------------EHHHHhhhccC---
Confidence 788899999999999999999999999 9999999 789999994 56666531100
Q ss_pred CchhHHHHHHHhhhcchhhhhhhhccccCCCCCCCCCCCCCccchhhhccccCCCccccccchhhhhcCC-ccEEeCCCC
Q 016003 272 PEDLVRVVKERLKDKGLEGMLEHFDMSSSLMPYLSTSSSSDEESTATSKLTRSGKHSRSMSYSARMVRRA-EAIVCHPTS 350 (397)
Q Consensus 272 ~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~it~~~~~ 350 (397)
... ..++|+. +++++++++
T Consensus 151 ----------------------------------------------------~~~--------v~~im~~~~~~~v~~~~ 170 (491)
T 1zfj_A 151 ----------------------------------------------------NAP--------ISEHMTSEHLVTAAVGT 170 (491)
T ss_dssp ----------------------------------------------------SSB--------TTTSCCCSCCCCEETTC
T ss_pred ----------------------------------------------------CCc--------HHHHcCCCCCEEECCCC
Confidence 000 0124676 899999999
Q ss_pred cHHHHHHHHHHcCCcEEEEEcCCCcEEEEEehHHHHHHHHH
Q 016003 351 SLMAVMIQAIAHRVTYVWVIEDDCTLTGIVTFSDLLKVFRK 391 (397)
Q Consensus 351 sl~~v~~~m~~~~i~rl~VVd~~~~lvGvVt~~DIl~~l~~ 391 (397)
++.+++++|.+++++++||||++|+++|+||+.||++.+.+
T Consensus 171 ~l~~a~~~m~~~~~~~lpVVd~~g~lvGivt~~Dil~~~~~ 211 (491)
T 1zfj_A 171 DLETAERILHEHRIEKLPLVDNSGRLSGLITIKDIEKVIEF 211 (491)
T ss_dssp CHHHHHHHHHHTTCSEEEEECTTSBEEEEEEHHHHHHHHHC
T ss_pred CHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEHHHHHHHHhc
Confidence 99999999999999999999999999999999999999863
|
| >3pc3_A CG1753, isoform A; CBS, synthase, PLP, heme, aminoacrylate, lyase; HET: HEM P1T; 1.55A {Drosophila melanogaster} PDB: 3pc2_A* 3pc4_A* | Back alignment and structure |
|---|
Probab=99.33 E-value=2.5e-12 Score=133.58 Aligned_cols=131 Identities=18% Similarity=0.182 Sum_probs=105.6
Q ss_pred cccchhhhhhcCCCCeEEEeCC-hhHHHHHHHHhhCCCceEEEEccCCCCCCCCCCCCCCCeEEEEEehhHHHHHHhhcC
Q 016003 5 LLADEVSDLCLGKPALRALSIS-AAIADALSALKNSDESFISVWDCNCCSNHRKLGDACECQCVGKVCMVDVICYLCKDS 83 (397)
Q Consensus 5 ~~~~~v~dl~~~k~~li~v~~~-~tv~~Al~~L~~~~I~s~PV~d~~~~~~~~~~~~~~~~~~vGiv~~~Dil~~l~~~~ 83 (397)
|...+|+|+|. +++++++++ +|+.+|+++|.++++.++||+|.+ +++++|+|+..||++++....
T Consensus 381 l~~~~V~diM~--~~~vtv~~~~~tv~ea~~~m~~~~~~~lpVvd~~------------~g~lvGiVt~~Dll~~l~~~~ 446 (527)
T 3pc3_A 381 WWSLAIAELEL--PAPPVILKSDATVGEAIALMKKHRVDQLPVVDQD------------DGSVLGVVGQETLITQIVSMN 446 (527)
T ss_dssp TTTSBGGGGCC--CCCSCCEETTCBHHHHHHHHHHHTCSEEEEECTT------------TCCEEEEEEHHHHHHHHHHHC
T ss_pred ccCCcHHHhCc--CCCeEEcCCCCcHHHHHHHHHHcCCCeEEEEECC------------CCEEEEEEEHHHHHHHHHhcc
Confidence 44678999994 678999999 999999999999999999999921 368999999999999887532
Q ss_pred CCCChhhhhcCChhhhccCCCCCceEEeCCCCCHHHHHHHHh-cCCceEEEeccCcchhhhhhhcccccccccCCCCcee
Q 016003 84 NSLSPSLALKQPVSVLLPQLLPPLVMHVEPSCSLLEAMDLML-GGAQNLVVPIKNRLSIKRKQQQKLSSSSLTNHNGREF 162 (397)
Q Consensus 84 ~l~~~~~~~~~~V~~lm~~~~~~~~~~V~~~~sL~~al~~m~-~g~~r~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (397)
...+.+|+++|... ++++.++++|.+++++|. +++ ++|++++.. ..++++
T Consensus 447 ------~~~~~~V~~im~~~----~~~v~~~~~l~~a~~~m~~~~~--~pVVd~~~~-----------------~~g~lv 497 (527)
T 3pc3_A 447 ------RQQSDPAIKALNKR----VIRLNESEILGKLARVLEVDPS--VLILGKNPA-----------------GKVELK 497 (527)
T ss_dssp ------CCTTSBGGGGEETT----CCEEETTSBHHHHHHHHTTCSE--EEEEEECSS-----------------SCEEEE
T ss_pred ------CcCCCcHHHHhcCC----CeEECCCCcHHHHHHHHhhCCE--EEEEeCCcc-----------------cCCeEE
Confidence 12357899999765 899999999999999997 343 466653200 124678
Q ss_pred eeecHHHHHHHHHhcc
Q 016003 163 CWLTQEDIIRFILSSI 178 (397)
Q Consensus 163 ~IITq~DIi~~l~~~~ 178 (397)
||||+.||++++.++.
T Consensus 498 GIVT~~Dll~~l~~~~ 513 (527)
T 3pc3_A 498 ALATKLDVTTFIAAGK 513 (527)
T ss_dssp EEEEHHHHHHHHHTCC
T ss_pred EEEEHHHHHHHHHhcc
Confidence 9999999999998653
|
| >2oux_A Magnesium transporter; 10001B, structural genomics, PSI-2, P structure initiative, nysgxrc; 2.16A {Enterococcus faecalis} SCOP: a.118.26.1 d.37.1.1 | Back alignment and structure |
|---|
Probab=99.32 E-value=4.4e-12 Score=121.67 Aligned_cols=121 Identities=17% Similarity=0.165 Sum_probs=104.0
Q ss_pred cccchhhhhhcCCCCeEEEeCChhHHHHHHHHhhC-----CCceEEEEccCCCCCCCCCCCCCCCeEEEEEehhHHHHHH
Q 016003 5 LLADEVSDLCLGKPALRALSISAAIADALSALKNS-----DESFISVWDCNCCSNHRKLGDACECQCVGKVCMVDVICYL 79 (397)
Q Consensus 5 ~~~~~v~dl~~~k~~li~v~~~~tv~~Al~~L~~~-----~I~s~PV~d~~~~~~~~~~~~~~~~~~vGiv~~~Dil~~l 79 (397)
+...+|+++|. ++++++++++|+.+|++.|.++ ++..+||+|. +++++|+|+..|++..
T Consensus 134 ~~~~~v~~iM~--~~~~~v~~~~tv~ea~~~~~~~~~~~~~~~~~pVvd~-------------~~~lvGivt~~dll~~- 197 (286)
T 2oux_A 134 YEDETAGAIMT--TEFVSIVANQTVRSAMYVLKNQADMAETIYYVYVVDQ-------------ENHLVGVISLRDLIVN- 197 (286)
T ss_dssp SCTTBHHHHCB--SCCCEECSSSBHHHHHHHHHHHCSSCSCCSEEEEECT-------------TCBEEEEEEHHHHTTS-
T ss_pred CChHHHHHhCC--CCceEECCCCcHHHHHHHHHHcccCccceeEEEEEcC-------------CCeEEEEEEHHHHHcC-
Confidence 34678999994 6799999999999999999998 8888999996 3689999999999853
Q ss_pred hhcCCCCChhhhhcCChhhhccCCCCCceEEeCCCCCHHHHHHHHh-cCCceEEEeccCcchhhhhhhcccccccccCCC
Q 016003 80 CKDSNSLSPSLALKQPVSVLLPQLLPPLVMHVEPSCSLLEAMDLML-GGAQNLVVPIKNRLSIKRKQQQKLSSSSLTNHN 158 (397)
Q Consensus 80 ~~~~~l~~~~~~~~~~V~~lm~~~~~~~~~~V~~~~sL~~al~~m~-~g~~r~~V~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (397)
..+.+|+++|... ++++.+++++.+|++.|. +++++++|++++
T Consensus 198 -----------~~~~~v~~im~~~----~~~v~~~~~l~ea~~~m~~~~~~~lpVVd~~--------------------- 241 (286)
T 2oux_A 198 -----------DDDTLIADILNER----VISVHVGDDQEDVAQTIRDYDFLAVPVTDYD--------------------- 241 (286)
T ss_dssp -----------CTTSBHHHHSBSC----CCCEETTSBHHHHHHHHHHHTCSEEEEECTT---------------------
T ss_pred -----------CCCCcHHHHcCCC----CeeecCCCCHHHHHHHHHHcCCcEEEEEcCC---------------------
Confidence 1246899999755 889999999999999999 799999998632
Q ss_pred CceeeeecHHHHHHHHHhc
Q 016003 159 GREFCWLTQEDIIRFILSS 177 (397)
Q Consensus 159 ~~~~~IITq~DIi~~l~~~ 177 (397)
|+.+|+||..||++++.+.
T Consensus 242 g~lvGiIT~~Dil~~i~~e 260 (286)
T 2oux_A 242 DHLLGIVTVDDIIDVIDDE 260 (286)
T ss_dssp CBEEEEEEHHHHHHHHHHH
T ss_pred CeEEEEEEHHHHHHHHHHH
Confidence 4688999999999998763
|
| >1me8_A Inosine-5'-monophosphate dehydrogenase; alpha beta barrel, oxidoreductase; HET: RVP; 1.90A {Tritrichomonas foetus} SCOP: c.1.5.1 PDB: 1ak5_A* 1me7_A* 1me9_A* 1meh_A* 1mei_A* 1mew_A* 1pvn_A* 1lrt_A* | Back alignment and structure |
|---|
Probab=99.29 E-value=2.6e-13 Score=140.23 Aligned_cols=115 Identities=18% Similarity=0.147 Sum_probs=0.4
Q ss_pred CCcCeEEEeCCCcHHHHHHHHHhcCCCCCEEEEEcCC---CcEEEeeccCcccCcchhHHHHHhhcChhhhhhhhccCCC
Q 016003 195 ISTDVVAVDYHSPASLALEAISRSLFDQTSVAVVDSD---GFLIGEISPSTLGCCDETVAAAITTLSAGDLMAYIDCGGP 271 (397)
Q Consensus 195 ~~~~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~---g~lvG~is~~dl~~~~~~~~~~~~~ls~~Dl~~~~~~~~~ 271 (397)
|+++++++.+++++.+|+++|.++++ +++||+|++ |+++|+||..||.+. . .+
T Consensus 103 M~~~~~~v~~~~tv~eal~~m~~~~~--s~~pVvd~~~~~g~lvGiVt~~Dl~~~-----------------~-~~---- 158 (503)
T 1me8_A 103 FVVSDSNVKPDQTFADVLAISQRTTH--NTVAVTDDGTPHGVLLGLVTQRDYPID-----------------L-TQ---- 158 (503)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccCCeEECCCCcHHHHHHHHHHcCc--eEEEEEECCCcCCeEEEEEEHHHHHhh-----------------h-cc----
Confidence 88899999999999999999999999 999999987 899999664444430 0 00
Q ss_pred CchhHHHHHHHhhhcchhhhhhhhccccCCCCCCCCCCCCCccchhhhccccCCCccccccchhhhhcCCc--cEEeCCC
Q 016003 272 PEDLVRVVKERLKDKGLEGMLEHFDMSSSLMPYLSTSSSSDEESTATSKLTRSGKHSRSMSYSARMVRRAE--AIVCHPT 349 (397)
Q Consensus 272 ~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~it~~~~ 349 (397)
. . .. ..++|+++ +++|+++
T Consensus 159 -----------~------------~----------------------------~~--------V~diM~~~~~~~tv~~~ 179 (503)
T 1me8_A 159 -----------T------------E----------------------------TK--------VSDMMTPFSKLVTAHQD 179 (503)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred -----------c------------c----------------------------Cc--------HHHHhCCCCCCEEEcCC
Confidence 0 0 00 01245655 9999999
Q ss_pred CcHHHHHHHHHHcCCcEEEEEcCCCcEEEEEehHHHHHHHHHH
Q 016003 350 SSLMAVMIQAIAHRVTYVWVIEDDCTLTGIVTFSDLLKVFRKH 392 (397)
Q Consensus 350 ~sl~~v~~~m~~~~i~rl~VVd~~~~lvGvVt~~DIl~~l~~~ 392 (397)
+++.+++++|.+++++++||||++|+++|+||..||++.+...
T Consensus 180 ~sl~ea~~~m~~~~i~~lpVVDe~g~lvGiIT~~Dil~~~~~~ 222 (503)
T 1me8_A 180 TKLSEANKIIWEKKLNALPIIDDDQHLRYIVFRKDYDRSQVCH 222 (503)
T ss_dssp ------------------------------------------C
T ss_pred CcHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEecHHHHhhhcc
Confidence 9999999999999999999999999999999999999988653
|
| >4af0_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase, GTP biosynthesis, drug resistance; HET: MOA IMP; 2.20A {Cryptococcus neoformans} PDB: 4af0_B* | Back alignment and structure |
|---|
Probab=99.29 E-value=2.7e-13 Score=138.29 Aligned_cols=110 Identities=19% Similarity=0.212 Sum_probs=0.0
Q ss_pred CCcCeEEEeCCCcHHHHHHHHHhcCCCCCEEEEEcC---CCcEEEeeccCcccCcchhHHHHHhhcChhhhhhhhccCCC
Q 016003 195 ISTDVVAVDYHSPASLALEAISRSLFDQTSVAVVDS---DGFLIGEISPSTLGCCDETVAAAITTLSAGDLMAYIDCGGP 271 (397)
Q Consensus 195 ~~~~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~---~g~lvG~is~~dl~~~~~~~~~~~~~ls~~Dl~~~~~~~~~ 271 (397)
|-.+++++.|+.++.||+++|.++++ +++||+|+ +|+|+||| +.+|++. .+.
T Consensus 144 ~i~dPvtl~P~~Tv~da~~l~~~~~i--sgvpVvd~g~~~~kLvGIv-------------------T~RD~rf-~d~--- 198 (556)
T 4af0_A 144 FITDPLCLGPDATVGDVLEIKAKFGF--CGVPITETGEPDSKLLGIV-------------------TGRDVQF-QDA--- 198 (556)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccCCCeEcCCCCCHHHHHHHHHHhCC--CccccccccCcCCEEEEEE-------------------ecccccc-ccc---
Confidence 45679999999999999999999999 99999987 67999995 4566542 110
Q ss_pred CchhHHHHHHHhhhcchhhhhhhhccccCCCCCCCCCCCCCccchhhhccccCCCccccccchhhhhcCCccEEeCCCCc
Q 016003 272 PEDLVRVVKERLKDKGLEGMLEHFDMSSSLMPYLSTSSSSDEESTATSKLTRSGKHSRSMSYSARMVRRAEAIVCHPTSS 351 (397)
Q Consensus 272 ~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~~~~s 351 (397)
... ..++|+++++|++.+.+
T Consensus 199 ----------------------------------------------------~~~--------V~evMT~~lvt~~~~~~ 218 (556)
T 4af0_A 199 ----------------------------------------------------ETP--------IKSVMTTEVVTGSSPIT 218 (556)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ----------------------------------------------------ceE--------hhhhcccceEEecCCCC
Confidence 000 11357889999999999
Q ss_pred HHHHHHHHHHcCCcEEEEEcCCCcEEEEEehHHHHHHH
Q 016003 352 LMAVMIQAIAHRVTYVWVIEDDCTLTGIVTFSDLLKVF 389 (397)
Q Consensus 352 l~~v~~~m~~~~i~rl~VVd~~~~lvGvVt~~DIl~~l 389 (397)
+.+|.+.|.+|++..+||||++++|+|+||..||++.-
T Consensus 219 leeA~~iL~~~kieklpVVd~~g~LvGlIT~kDi~k~~ 256 (556)
T 4af0_A 219 LEKANSLLRETKKGKLPIVDSNGHLVSLVARSDLLKNQ 256 (556)
T ss_dssp --------------------------------------
T ss_pred HHHHHHHHHHccccceeEEccCCcEEEEEEechhhhhh
Confidence 99999999999999999999999999999999999864
|
| >4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor} | Back alignment and structure |
|---|
Probab=99.29 E-value=6.8e-13 Score=136.84 Aligned_cols=112 Identities=21% Similarity=0.202 Sum_probs=80.9
Q ss_pred CCCcCeEEEeCCCcHHHHHHHHHhcCCCCCEEEEEcCCCcEEEeeccCcccCcchhHHHHHhhcChhhhhhhhccCCCCc
Q 016003 194 IISTDVVAVDYHSPASLALEAISRSLFDQTSVAVVDSDGFLIGEISPSTLGCCDETVAAAITTLSAGDLMAYIDCGGPPE 273 (397)
Q Consensus 194 ~~~~~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~is~~dl~~~~~~~~~~~~~ls~~Dl~~~~~~~~~~~ 273 (397)
+|..+++++.+++++.+|+++|.++++ +++||+|++|+++|+| +.+|++...+.
T Consensus 94 ~m~~d~v~v~~~~tv~ea~~~m~~~~~--s~~PVvd~~~~lvGiV-------------------t~rDL~~~~~~----- 147 (496)
T 4fxs_A 94 GVVTHPVTVRPEQTIADVMELTHYHGF--AGFPVVTENNELVGII-------------------TGRDVRFVTDL----- 147 (496)
T ss_dssp --CBCCCCBCSSSBHHHHHHHHTSSCC--CEEEEECSSSBEEEEE-------------------EHHHHTTCCCT-----
T ss_pred ccccCceEECCCCCHHHHHHHHHHcCC--cEEEEEccCCEEEEEE-------------------EHHHHhhcccC-----
Confidence 688899999999999999999999999 9999999999999995 46666520000
Q ss_pred hhHHHHHHHhhhcchhhhhhhhccccCCCCCCCCCCCCCccchhhhccccCCCccccccchhhhhcC-C-ccEEeCCCCc
Q 016003 274 DLVRVVKERLKDKGLEGMLEHFDMSSSLMPYLSTSSSSDEESTATSKLTRSGKHSRSMSYSARMVRR-A-EAIVCHPTSS 351 (397)
Q Consensus 274 ~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~it~~~~~s 351 (397)
... ..++|+ . ++++++++.+
T Consensus 148 --------------------------------------------------~~~--------v~diM~p~~~~vtv~~~~~ 169 (496)
T 4fxs_A 148 --------------------------------------------------TKS--------VAAVMTPKERLATVKEGAT 169 (496)
T ss_dssp --------------------------------------------------TSB--------GGGTSEEGGGCCEEECC--
T ss_pred --------------------------------------------------CCc--------HHHHhcCCCCCEEECCCCC
Confidence 000 112455 3 6999999999
Q ss_pred HHHHHHHHHHcCCcEEEEEcCCCcEEEEEehHHHHHHH
Q 016003 352 LMAVMIQAIAHRVTYVWVIEDDCTLTGIVTFSDLLKVF 389 (397)
Q Consensus 352 l~~v~~~m~~~~i~rl~VVd~~~~lvGvVt~~DIl~~l 389 (397)
+.++++.|.+++++++||||++|+++|+||+.||++..
T Consensus 170 l~ea~~~m~~~~i~~lpVVDe~G~l~GiIT~~DIl~~~ 207 (496)
T 4fxs_A 170 GAEVQEKMHKARVEKILVVNDEFQLKGMITAKDFHKAE 207 (496)
T ss_dssp --CGGGTCC---CCCEEEECTTSBCCEEECCC-----C
T ss_pred HHHHHHHHHHcCCCEEEEEcCCCCEEEeehHhHHHHhh
Confidence 99999999999999999999999999999999999864
|
| >1vrd_A Inosine-5'-monophosphate dehydrogenase; TM1347, structural G joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.18A {Thermotoga maritima} SCOP: c.1.5.1 | Back alignment and structure |
|---|
Probab=99.29 E-value=2.9e-13 Score=139.64 Aligned_cols=114 Identities=21% Similarity=0.286 Sum_probs=5.6
Q ss_pred CCCcCeEEEeCCCcHHHHHHHHHhcCCCCCEEEEEcCCCcEEEeeccCcccCcchhHHHHHhhcChhhhhhhhccCCCCc
Q 016003 194 IISTDVVAVDYHSPASLALEAISRSLFDQTSVAVVDSDGFLIGEISPSTLGCCDETVAAAITTLSAGDLMAYIDCGGPPE 273 (397)
Q Consensus 194 ~~~~~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~is~~dl~~~~~~~~~~~~~ls~~Dl~~~~~~~~~~~ 273 (397)
+|+++++++++++++.+|++.|.++++ +++||||++|+++|+||..||.+. .+.
T Consensus 100 iM~~~~~~v~~~~tv~ea~~~m~~~~~--~~~pVvd~~~~lvGivt~~Dl~~~-------------------~~~----- 153 (494)
T 1vrd_A 100 GIIYDPITVTPDMTVKEAIDLMAEYKI--GGLPVVDEEGRLVGLLTNRDVRFE-------------------KNL----- 153 (494)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cCccCCeEECCCCCHHHHHHHHHHcCc--eEEEEEcCCCEEEEEEEHHHHHhh-------------------cCC-----
Confidence 688899999999999999999999999 999999998999999664444330 000
Q ss_pred hhHHHHHHHhhhcchhhhhhhhccccCCCCCCCCCCCCCccchhhhccccCCCccccccchhhhhcCC--ccEEeCCCCc
Q 016003 274 DLVRVVKERLKDKGLEGMLEHFDMSSSLMPYLSTSSSSDEESTATSKLTRSGKHSRSMSYSARMVRRA--EAIVCHPTSS 351 (397)
Q Consensus 274 ~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~it~~~~~s 351 (397)
. .. ..++|++ ++++++++++
T Consensus 154 ----------------------~----------------------------~~--------v~~im~~~~~~~~v~~~~~ 175 (494)
T 1vrd_A 154 ----------------------S----------------------------KK--------IKDLMTPREKLIVAPPDIS 175 (494)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ----------------------C----------------------------Cc--------HHHHhCCCCCCeEECCCCC
Confidence 0 00 0124666 8999999999
Q ss_pred HHHHHHHHHHcCCcEEEEEcCCCcEEEEEehHHHHHHHHH
Q 016003 352 LMAVMIQAIAHRVTYVWVIEDDCTLTGIVTFSDLLKVFRK 391 (397)
Q Consensus 352 l~~v~~~m~~~~i~rl~VVd~~~~lvGvVt~~DIl~~l~~ 391 (397)
+.+++++|.+++++++||||++|+++|+||..||++.+..
T Consensus 176 l~ea~~~m~~~~~~~lpVVd~~g~lvGiIt~~Dll~~~~~ 215 (494)
T 1vrd_A 176 LEKAKEILHQHRIEKLPLVSKDNKLVGLITIKDIMSVIEH 215 (494)
T ss_dssp ---------------------------------CHHHHTC
T ss_pred HHHHHHHHHHcCCcEEEEEcCCCeEEEEEEHHHHHhhhcc
Confidence 9999999999999999999999999999999999998754
|
| >3org_A CMCLC; transporter, transport protein; 3.50A {Cyanidioschyzon merolae} | Back alignment and structure |
|---|
Probab=99.28 E-value=2.3e-12 Score=136.68 Aligned_cols=170 Identities=11% Similarity=0.077 Sum_probs=103.4
Q ss_pred ccchhhhhhcCCCCeEEEeCChhHHHHHHHHh-hCCCceEEEEccCCCCCCCCCCCCCCCeEEEEEehhHHHHHHhhcCC
Q 016003 6 LADEVSDLCLGKPALRALSISAAIADALSALK-NSDESFISVWDCNCCSNHRKLGDACECQCVGKVCMVDVICYLCKDSN 84 (397)
Q Consensus 6 ~~~~v~dl~~~k~~li~v~~~~tv~~Al~~L~-~~~I~s~PV~d~~~~~~~~~~~~~~~~~~vGiv~~~Dil~~l~~~~~ 84 (397)
.+++|+|+|...++++++++++|+.|+.+.|. ++++.++||+|+ +++++|+|+..|+++.+.+...
T Consensus 451 ~~~~V~diM~p~~~v~~v~~~~t~~e~~~~~~~~~~~~~~PVvd~-------------~~~lvGiVt~~DL~~~l~~~~~ 517 (632)
T 3org_A 451 PEMTAREIMHPIEGEPHLFPDSEPQHIKGILEKFPNRLVFPVIDA-------------NGYLLGAISRKEIVDRLQHVLE 517 (632)
T ss_dssp TTSBHHHHCBCTTTSCCBCSSSCHHHHHHHHHHSTTCCEECBBCT-------------TCBBCCEESHHHHTTTTTTC--
T ss_pred ccCcHHHHhhcCCCceEecCCCcHHHHHHHHHhcCCcceEEEEec-------------CCeEEEEEEHHHHHHHHHHHhh
Confidence 56789999976578999999999999999999 899999999996 3689999999999987653210
Q ss_pred CCChhhhhcCChhhhccCCCCCceEEeCCCCCHHHHHHHHhcCCceEEEeccCcchhhhhhhcccccccccCCCCceeee
Q 016003 85 SLSPSLALKQPVSVLLPQLLPPLVMHVEPSCSLLEAMDLMLGGAQNLVVPIKNRLSIKRKQQQKLSSSSLTNHNGREFCW 164 (397)
Q Consensus 85 l~~~~~~~~~~V~~lm~~~~~~~~~~V~~~~sL~~al~~m~~g~~r~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I 164 (397)
....+.. .. ..........+.+.++.+... . +. .....
T Consensus 518 ------~~~~~~~---~~----~~~~~~~~~~l~~~~~~~~~~---~--~~------------------------~~~~~ 555 (632)
T 3org_A 518 ------DVPEPIA---GH----RTLVLLDAADLSENIEGLVDE---T--PS------------------------GEHSS 555 (632)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ------hcccccc---cc----cceeccCHHHHHhhcccCCCC---C--cc------------------------cchhh
Confidence 0011100 00 011111222222222111100 0 00 00011
Q ss_pred ecHHHHHHHHHhccCCCCCCccCCccccCCCCcCeEEEeCCCcHHHHHHHHHhcCCCCCEEEEEcCCCcEEEeeccCccc
Q 016003 165 LTQEDIIRFILSSISLFSPIPALSIDSLGIISTDVVAVDYHSPASLALEAISRSLFDQTSVAVVDSDGFLIGEISPSTLG 244 (397)
Q Consensus 165 ITq~DIi~~l~~~~~~l~~l~~~ti~~L~~~~~~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~is~~dl~ 244 (397)
.++.|...+ . +..++++ +|++++++|++++++.+|+++|.++++ ..+||+ ++|+++|+||.+||.
T Consensus 556 ~~e~~~~~~--------~--~~~~v~~--iMt~~pitV~~~~~l~ea~~~M~~~~i--~~lpVv-e~G~lvGIVT~~Dll 620 (632)
T 3org_A 556 KGKRTATVL--------E--PTSSLVV--PCDVSPIVVTSYSLVRQLHFLFVMLMP--SMIYVT-ERGKLVGIVEREDVA 620 (632)
T ss_dssp -------------------------CC--SCCCCCCEEETTCBHHHHHHHHHHTCC--SEEEEE-ETTEEEEEEEGGGTE
T ss_pred hcccceEee--------c--cccccch--hhcCCCceecCCCcHHHHHHHHHhcCC--CEEEEE-ECCEEEEEEehhhHH
Confidence 122222221 0 1123444 899999999999999999999999999 999999 789999999888887
Q ss_pred C
Q 016003 245 C 245 (397)
Q Consensus 245 ~ 245 (397)
+
T Consensus 621 ~ 621 (632)
T 3org_A 621 Y 621 (632)
T ss_dssp E
T ss_pred H
Confidence 6
|
| >2yvy_A MGTE, Mg2+ transporter MGTE; membrane protein, transport protein; 2.30A {Thermus thermophilus} PDB: 2yvz_A | Back alignment and structure |
|---|
Probab=99.27 E-value=1.1e-11 Score=118.26 Aligned_cols=120 Identities=21% Similarity=0.228 Sum_probs=101.7
Q ss_pred cccchhhhhhcCCCCeEEEeCChhHHHHHHHHhhC-----CCceEEEEccCCCCCCCCCCCCCCCeEEEEEehhHHHHHH
Q 016003 5 LLADEVSDLCLGKPALRALSISAAIADALSALKNS-----DESFISVWDCNCCSNHRKLGDACECQCVGKVCMVDVICYL 79 (397)
Q Consensus 5 ~~~~~v~dl~~~k~~li~v~~~~tv~~Al~~L~~~-----~I~s~PV~d~~~~~~~~~~~~~~~~~~vGiv~~~Dil~~l 79 (397)
+...+++++|. ++++++++++|+.+|++.|.++ ++..+||+|. +++++|+|+..|++..
T Consensus 132 ~~~~~v~~iM~--~~~~~v~~~~tv~ea~~~~~~~~~~~~~~~~~~Vvd~-------------~~~lvGivt~~dll~~- 195 (278)
T 2yvy_A 132 YEEDEAGGLMT--PEYVAVREGMTVEEVLRFLRRAAPDAETIYYIYVVDE-------------KGRLKGVLSLRDLIVA- 195 (278)
T ss_dssp SCTTBGGGTCB--SCCCEECTTSBHHHHHHHHHHHTTTCSCSSEEEEECT-------------TCBEEEEEEHHHHHHS-
T ss_pred CCcchHHhhcC--CCceEECCCCcHHHHHHHHHHccCCccceeEEEEECC-------------CCCEEEEEEHHHHhcC-
Confidence 34678999994 5799999999999999999997 8999999996 3689999999999853
Q ss_pred hhcCCCCChhhhhcCChhhhccCCCCCceEEeCCCCCHHHHHHHHh-cCCceEEEeccCcchhhhhhhcccccccccCCC
Q 016003 80 CKDSNSLSPSLALKQPVSVLLPQLLPPLVMHVEPSCSLLEAMDLML-GGAQNLVVPIKNRLSIKRKQQQKLSSSSLTNHN 158 (397)
Q Consensus 80 ~~~~~l~~~~~~~~~~V~~lm~~~~~~~~~~V~~~~sL~~al~~m~-~g~~r~~V~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (397)
..+.+|+++|... ++++.+++++.+|++.|. ++.++++|++.+
T Consensus 196 -----------~~~~~v~~im~~~----~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~--------------------- 239 (278)
T 2yvy_A 196 -----------DPRTRVAEIMNPK----VVYVRTDTDQEEVARLMADYDFTVLPVVDEE--------------------- 239 (278)
T ss_dssp -----------CTTCBSTTTSBSS----CCCEETTSBHHHHHHHHHHHTCSEEEEECTT---------------------
T ss_pred -----------CCCCcHHHHhCCC----CeEEeCCCCHHHHHHHHHhcCCCEEEEEeCC---------------------
Confidence 1246899999654 889999999999999999 799999998632
Q ss_pred CceeeeecHHHHHHHHHh
Q 016003 159 GREFCWLTQEDIIRFILS 176 (397)
Q Consensus 159 ~~~~~IITq~DIi~~l~~ 176 (397)
|+.+|+||..||++.+.+
T Consensus 240 g~lvGivT~~Dil~~i~~ 257 (278)
T 2yvy_A 240 GRLVGIVTVDDVLDVLEA 257 (278)
T ss_dssp SBEEEEEEHHHHHHHC--
T ss_pred CeEEEEEEHHHHHHHHHH
Confidence 468899999999998864
|
| >4avf_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase; 2.23A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=99.25 E-value=5.6e-13 Score=137.30 Aligned_cols=112 Identities=21% Similarity=0.296 Sum_probs=0.0
Q ss_pred CCCcCeEEEeCCCcHHHHHHHHHhcCCCCCEEEEEcCCCcEEEeeccCcccCcchhHHHHHhhcChhhhhhhhccCCCCc
Q 016003 194 IISTDVVAVDYHSPASLALEAISRSLFDQTSVAVVDSDGFLIGEISPSTLGCCDETVAAAITTLSAGDLMAYIDCGGPPE 273 (397)
Q Consensus 194 ~~~~~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~is~~dl~~~~~~~~~~~~~ls~~Dl~~~~~~~~~~~ 273 (397)
+|..+++++.+++++.+|+++|.++++ +++||+| +|+++|+|| .+|++...+.
T Consensus 93 ~m~~~~v~v~~~~tv~ea~~~m~~~~~--s~~pVvd-~g~lvGIVt-------------------~rDl~~~~~~----- 145 (490)
T 4avf_A 93 AIVRDPVTVTPSTKIIELLQMAREYGF--SGFPVVE-QGELVGIVT-------------------GRDLRVKPNA----- 145 (490)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CcccCceEeCCCCcHHHHHHHHHHhCC--CEEEEEE-CCEEEEEEE-------------------hHHhhhcccc-----
Confidence 677889999999999999999999999 9999999 789999955 4554320000
Q ss_pred hhHHHHHHHhhhcchhhhhhhhccccCCCCCCCCCCCCCccchhhhccccCCCccccccchhhhhcC-C-ccEEeCCCCc
Q 016003 274 DLVRVVKERLKDKGLEGMLEHFDMSSSLMPYLSTSSSSDEESTATSKLTRSGKHSRSMSYSARMVRR-A-EAIVCHPTSS 351 (397)
Q Consensus 274 ~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~it~~~~~s 351 (397)
. .. ..++|+ . +++|++++.+
T Consensus 146 ----------------------~----------------------------~~--------V~~vMtp~~~~vtv~~~~~ 167 (490)
T 4avf_A 146 ----------------------G----------------------------DT--------VAAIMTPKDKLVTAREGTP 167 (490)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ----------------------C----------------------------Cc--------HHHHhccCCCCEEECCCCc
Confidence 0 00 012456 3 6999999999
Q ss_pred HHHHHHHHHHcCCcEEEEEcCCCcEEEEEehHHHHHHHH
Q 016003 352 LMAVMIQAIAHRVTYVWVIEDDCTLTGIVTFSDLLKVFR 390 (397)
Q Consensus 352 l~~v~~~m~~~~i~rl~VVd~~~~lvGvVt~~DIl~~l~ 390 (397)
+.+++++|.+++++++||||++|+++|+||+.||++...
T Consensus 168 l~ea~~~m~~~~i~~lpVVDe~g~lvGiIT~~Dil~~~~ 206 (490)
T 4avf_A 168 LEEMKAKLYENRIEKMLVVDENFYLRGLVTFRDIEKAKT 206 (490)
T ss_dssp ---------------------------------------
T ss_pred HHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHhhhhcc
Confidence 999999999999999999999999999999999999863
|
| >1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A* | Back alignment and structure |
|---|
Probab=99.12 E-value=1.1e-12 Score=136.09 Aligned_cols=131 Identities=18% Similarity=0.133 Sum_probs=73.7
Q ss_pred cHHHHHHHHHhccCCCCCCccCCccccCCCCcCeEEEeCCCcHHHHHHHHHhcCCCCCEEEEEcC---CCcEEEeeccCc
Q 016003 166 TQEDIIRFILSSISLFSPIPALSIDSLGIISTDVVAVDYHSPASLALEAISRSLFDQTSVAVVDS---DGFLIGEISPST 242 (397)
Q Consensus 166 Tq~DIi~~l~~~~~~l~~l~~~ti~~L~~~~~~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~---~g~lvG~is~~d 242 (397)
|..++.+++..- +++. ++|.++++++++++++.+|+++|.++++ +++||||+ +|+++|+||..|
T Consensus 96 t~e~~~~~v~~v---------~~~~--~im~~~~~~v~~~~tv~ea~~~m~~~~~--~~~pVvd~~~~~~~lvGiVt~~D 162 (514)
T 1jcn_A 96 TPEFQANEVRKV---------KNFE--QGFITDPVVLSPSHTVGDVLEAKMRHGF--SGIPITETGTMGSKLVGIVTSRD 162 (514)
T ss_dssp CHHHHHHHHHHH---------HTCC--TTSCSSCCCCCC-------------------CEESCC--------CCEECTTT
T ss_pred CHHHHHHHHHhh---------hhhh--hccccCCEEECCCCCHHHHHHHHHhcCC--CEEEEEeCCCcCCEEEEEEEHHH
Confidence 666666665321 1233 3688889999999999999999999999 99999998 589999977655
Q ss_pred ccCcchhHHHHHhhcChhhhhhhhccCCCCchhHHHHHHHhhhcchhhhhhhhccccCCCCCCCCCCCCCccchhhhccc
Q 016003 243 LGCCDETVAAAITTLSAGDLMAYIDCGGPPEDLVRVVKERLKDKGLEGMLEHFDMSSSLMPYLSTSSSSDEESTATSKLT 322 (397)
Q Consensus 243 l~~~~~~~~~~~~~ls~~Dl~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (397)
|.+.. . . . .
T Consensus 163 l~~~~-----------~----~--~----------------------------~-------------------------- 171 (514)
T 1jcn_A 163 IDFLA-----------E----K--D----------------------------H-------------------------- 171 (514)
T ss_dssp TC------------------------------------------------------------------------------
T ss_pred HHhhh-----------h----c--c----------------------------C--------------------------
Confidence 54410 0 0 0 0
Q ss_pred cCCCccccccchhhhhcCC--ccEEeCCCCcHHHHHHHHHHcCCcEEEEEcCCCcEEEEEehHHHHHHH
Q 016003 323 RSGKHSRSMSYSARMVRRA--EAIVCHPTSSLMAVMIQAIAHRVTYVWVIEDDCTLTGIVTFSDLLKVF 389 (397)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~--~~it~~~~~sl~~v~~~m~~~~i~rl~VVd~~~~lvGvVt~~DIl~~l 389 (397)
... ..++|+. +++|+++++++.+++++|.+++++++||||++|+++|+||++||++.+
T Consensus 172 -~~~--------v~~vm~~~~~~~tv~~~~~l~ea~~~m~~~~~~~lpVVd~~g~lvGiIt~~Dll~~~ 231 (514)
T 1jcn_A 172 -TTL--------LSEVMTPRIELVVAPAGVTLKEANEILQRSKKGKLPIVNDCDELVAIIARTDLKKNR 231 (514)
T ss_dssp ------------------CCBCCCCEETTCCSTTTTTHHHHHTCSCCCEESSSSCCC----CCCCSSCC
T ss_pred -CCC--------HHHHhCCCCCCeEECCCCCHHHHHHHHHHcCCCcccEECCCCeEEEEEEHHHHHHHh
Confidence 000 0124666 899999999999999999999999999999999999999999998765
|
| >3ghd_A A cystathionine beta-synthase domain protein FUSE ribbon-like domain; PF1953,APC40009,cystathionine beta-synthase domain protein; 1.81A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.11 E-value=1.1e-10 Score=88.45 Aligned_cols=66 Identities=9% Similarity=0.064 Sum_probs=55.7
Q ss_pred CeEEEeCChhHHHHHHHHhhCCCceEEEEccCCCCCCCCCCCCCCCeEEEEEehhHHHHHHhhcCCCCChhhhhcCChhh
Q 016003 19 ALRALSISAAIADALSALKNSDESFISVWDCNCCSNHRKLGDACECQCVGKVCMVDVICYLCKDSNSLSPSLALKQPVSV 98 (397)
Q Consensus 19 ~li~v~~~~tv~~Al~~L~~~~I~s~PV~d~~~~~~~~~~~~~~~~~~vGiv~~~Dil~~l~~~~~l~~~~~~~~~~V~~ 98 (397)
+++++.+++|+.+|+++|.+++++++||.|. ++++||||.+||++.+.... ....+.+|++
T Consensus 1 k~vtv~p~~tv~ea~~~M~~~~i~~~~V~d~--------------~~lvGIvT~~Di~~~~~~~~-----~~~~~~~V~~ 61 (70)
T 3ghd_A 1 KAIVVQPKDTVDRVAKILSRNKAGSAVVMEG--------------DEILGVVTERDILDKVVAKG-----KNPKEVKVEE 61 (70)
T ss_dssp CEEEECTTCBHHHHHHHHHHTTCSEEEEEET--------------TEEEEEEEHHHHHHHTTTTT-----CCGGGCBGGG
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCEEEEEEC--------------CEEEEEEEHHHHHHHHHhcC-----CCcccCCHHH
Confidence 4799999999999999999999999999984 68999999999998765421 1234679999
Q ss_pred hccCC
Q 016003 99 LLPQL 103 (397)
Q Consensus 99 lm~~~ 103 (397)
+|..+
T Consensus 62 iMt~~ 66 (70)
T 3ghd_A 62 IMTKN 66 (70)
T ss_dssp TCEEC
T ss_pred hcCCC
Confidence 99754
|
| >3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A* | Back alignment and structure |
|---|
Probab=99.11 E-value=9.7e-10 Score=113.68 Aligned_cols=164 Identities=16% Similarity=0.080 Sum_probs=119.8
Q ss_pred hhhhhcC----CCCeEEEeCChhHHHHHHHHhhCCCceEEEEccCCCCCCCCCCCCCCCeEEEEEehhHHHHHHhhcCCC
Q 016003 10 VSDLCLG----KPALRALSISAAIADALSALKNSDESFISVWDCNCCSNHRKLGDACECQCVGKVCMVDVICYLCKDSNS 85 (397)
Q Consensus 10 v~dl~~~----k~~li~v~~~~tv~~Al~~L~~~~I~s~PV~d~~~~~~~~~~~~~~~~~~vGiv~~~Dil~~l~~~~~l 85 (397)
|.+++.. .++++++++++|+.+|+++|.+++++.+||+|.. . +++++|+|+.+|+.. .
T Consensus 109 V~~V~~~~~~m~~d~v~l~~~~tv~ea~~~m~~~~~s~~pVvd~g-~----------~~~lvGiVt~rDl~~---~---- 170 (511)
T 3usb_A 109 VDKVKRSESGVISDPFFLTPEHQVYDAEHLMGKYRISGVPVVNNL-D----------ERKLVGIITNRDMRF---I---- 170 (511)
T ss_dssp HHHHHTSSSCSSSSCCCBCTTSBHHHHHHHHHHHCCSEEEEESCT-T----------TCBEEEEEEHHHHTT---C----
T ss_pred HHHhhccccccccCCEEECCCCCHHHHHHHHHHcCCcEEEEEecC-C----------CCEEEEEEEehHhhh---h----
Confidence 5666644 3567899999999999999999999999999951 0 268999999999963 1
Q ss_pred CChhhhhcCChhhhccCCCCCceEEeCCCCCHHHHHHHHh-cCCceEEEeccCcchhhhhhhcccccccccCCCCceeee
Q 016003 86 LSPSLALKQPVSVLLPQLLPPLVMHVEPSCSLLEAMDLML-GGAQNLVVPIKNRLSIKRKQQQKLSSSSLTNHNGREFCW 164 (397)
Q Consensus 86 ~~~~~~~~~~V~~lm~~~~~~~~~~V~~~~sL~~al~~m~-~g~~r~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I 164 (397)
...+.+|+++|.. .+++++.+++++.++++.|. +++++++|++++ +...|+
T Consensus 171 ----~~~~~~V~~vM~~---~~~vtv~~~~~l~eal~~m~~~~i~~lpVVDe~---------------------g~l~Gi 222 (511)
T 3usb_A 171 ----QDYSIKISDVMTK---EQLITAPVGTTLSEAEKILQKYKIEKLPLVDNN---------------------GVLQGL 222 (511)
T ss_dssp ----CCSSSBHHHHCCC---CCCCCEETTCCHHHHHHHHHHHTCSEEEEECTT---------------------SBEEEE
T ss_pred ----ccCCCcHHHhccc---CCCEEECCCCCHHHHHHHHHHcCCCEEEEEeCC---------------------CCEeee
Confidence 1235789999974 24899999999999999999 799999998643 467899
Q ss_pred ecHHHHHHHHHhccCCCCCCccCCccccCCCCcC--eEEEeCCCcHHHHHHHHHhcCCCCCEEEEEcCCC
Q 016003 165 LTQEDIIRFILSSISLFSPIPALSIDSLGIISTD--VVAVDYHSPASLALEAISRSLFDQTSVAVVDSDG 232 (397)
Q Consensus 165 ITq~DIi~~l~~~~~~l~~l~~~ti~~L~~~~~~--v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g 232 (397)
||..||++.+...... . +.+.+- -..+.......+.++.+.+.++ ..+.|-..++
T Consensus 223 IT~~Dil~~~~~p~a~---------~--D~~~rl~V~aavg~~~d~~era~aLveaGv--d~I~Id~a~g 279 (511)
T 3usb_A 223 ITIKDIEKVIEFPNSA---------K--DKQGRLLVGAAVGVTADAMTRIDALVKASV--DAIVLDTAHG 279 (511)
T ss_dssp EEHHHHHHHHHCTTCC---------B--CTTSCBCCEEEECSSTTHHHHHHHHHHTTC--SEEEEECSCT
T ss_pred ccHHHHHHhhhcccch---------h--hhccceeeeeeeeeccchHHHHHHHHhhcc--ceEEeccccc
Confidence 9999999998531110 0 111211 2334444455666777777777 6666654433
|
| >2zy9_A Mg2+ transporter MGTE; membrane protien, metal transport; 2.94A {Thermus thermophilus} PDB: 2yvx_A | Back alignment and structure |
|---|
Probab=99.11 E-value=1.8e-10 Score=118.16 Aligned_cols=119 Identities=21% Similarity=0.230 Sum_probs=102.7
Q ss_pred ccchhhhhhcCCCCeEEEeCChhHHHHHHHHhhC-----CCceEEEEccCCCCCCCCCCCCCCCeEEEEEehhHHHHHHh
Q 016003 6 LADEVSDLCLGKPALRALSISAAIADALSALKNS-----DESFISVWDCNCCSNHRKLGDACECQCVGKVCMVDVICYLC 80 (397)
Q Consensus 6 ~~~~v~dl~~~k~~li~v~~~~tv~~Al~~L~~~-----~I~s~PV~d~~~~~~~~~~~~~~~~~~vGiv~~~Dil~~l~ 80 (397)
...+++++|. ++++++++++|+.+|++.|.++ ++..+||+|. +++++|+++.+|++..
T Consensus 153 ~~~~v~~iM~--~~~v~v~~~~tv~ea~~~~~~~~~~~~~~~~ipVvd~-------------~~~lvGiVt~~Dll~~-- 215 (473)
T 2zy9_A 153 EEDEAGGLMT--PEYVAVREGMTVEEVLRFLRRAAPDAETIYYIYVVDE-------------KGRLKGVLSLRDLIVA-- 215 (473)
T ss_dssp CTTBSTTTCB--SCEEEECTTCBHHHHHHHHHHHGGGCSEEEEEEEECT-------------TSBEEEEEEHHHHHHS--
T ss_pred CCCCHHHhCC--CCceEeCCCCcHHHHHHHHHhccCCcCceeEEEEECC-------------CCcEEEEEEHHHHhcC--
Confidence 4667899994 6899999999999999999996 6899999996 3689999999999853
Q ss_pred hcCCCCChhhhhcCChhhhccCCCCCceEEeCCCCCHHHHHHHHh-cCCceEEEeccCcchhhhhhhcccccccccCCCC
Q 016003 81 KDSNSLSPSLALKQPVSVLLPQLLPPLVMHVEPSCSLLEAMDLML-GGAQNLVVPIKNRLSIKRKQQQKLSSSSLTNHNG 159 (397)
Q Consensus 81 ~~~~l~~~~~~~~~~V~~lm~~~~~~~~~~V~~~~sL~~al~~m~-~g~~r~~V~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (397)
..+.+|+++|.+. ++++.+++++.++++.|. ++.+.++|++++ |
T Consensus 216 ----------~~~~~v~dim~~~----~~~v~~~~~l~ea~~~m~~~~~~~lpVVDe~---------------------g 260 (473)
T 2zy9_A 216 ----------DPRTRVAEIMNPK----VVYVRTDTDQEEVARLMADYDFTVLPVVDEE---------------------G 260 (473)
T ss_dssp ----------CTTSBGGGTSBSS----CCCEESSSBHHHHHHHHHHHTCSEEEEECTT---------------------S
T ss_pred ----------CCCCcHHHHhCCC----CeEEeCCCcHHHHHHHHHhcCCcEEEEEcCC---------------------C
Confidence 1246899999754 899999999999999999 799999998632 4
Q ss_pred ceeeeecHHHHHHHHHh
Q 016003 160 REFCWLTQEDIIRFILS 176 (397)
Q Consensus 160 ~~~~IITq~DIi~~l~~ 176 (397)
+.+|+||..||++.+.+
T Consensus 261 ~lvGiIT~~Dil~~i~~ 277 (473)
T 2zy9_A 261 RLVGIVTVDDVLDVLEA 277 (473)
T ss_dssp BEEEEEEHHHHHHHHHH
T ss_pred EEEEEEehHhhHHHHHH
Confidence 68899999999999865
|
| >2cu0_A Inosine-5'-monophosphate dehydrogenase; structural genomics, pyrococcus horikoshii OT3, riken structural genomics/PROT initiative, RSGI; HET: XMP; 2.10A {Pyrococcus horikoshii} SCOP: c.1.5.1 | Back alignment and structure |
|---|
Probab=99.04 E-value=2.1e-11 Score=125.45 Aligned_cols=110 Identities=20% Similarity=0.300 Sum_probs=0.4
Q ss_pred CCCcCeEEEeCCCcHHHHHHHHHhcCCCCCEEEEEcCCCcEEEeeccCcccCcchhHHHHHhhcChhhhhhhhccCCCCc
Q 016003 194 IISTDVVAVDYHSPASLALEAISRSLFDQTSVAVVDSDGFLIGEISPSTLGCCDETVAAAITTLSAGDLMAYIDCGGPPE 273 (397)
Q Consensus 194 ~~~~~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~is~~dl~~~~~~~~~~~~~ls~~Dl~~~~~~~~~~~ 273 (397)
.|..+++++.+++++.+++++|.++++ +++||+|+ ++++|+|| .+|++. +.
T Consensus 98 ~m~~~~~~v~~~~tv~ea~~~~~~~~~--~~~pVvd~-~~lvGivt-------------------~~Dl~~--~~----- 148 (486)
T 2cu0_A 98 LIVEDVITIAPDETVDFALFLMEKHGI--DGLPVVED-EKVVGIIT-------------------KKDIAA--RE----- 148 (486)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccCceEECCCCCHHHHHHHHHHcCC--cEEEEEEC-CEEEEEEE-------------------HHHhcc--CC-----
Confidence 577889999999999999999999999 99999998 89999955 455432 00
Q ss_pred hhHHHHHHHhhhcchhhhhhhhccccCCCCCCCCCCCCCccchhhhccccCCCccccccchhhhhcCCccEEeCCCCcHH
Q 016003 274 DLVRVVKERLKDKGLEGMLEHFDMSSSLMPYLSTSSSSDEESTATSKLTRSGKHSRSMSYSARMVRRAEAIVCHPTSSLM 353 (397)
Q Consensus 274 ~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~~~~sl~ 353 (397)
. . . ..++|..+++++++++++.
T Consensus 149 --------~-------------------~-----------------------~--------v~~im~~~~~~v~~~~~l~ 170 (486)
T 2cu0_A 149 --------G-------------------K-----------------------L--------VKELMTKEVITVPESIEVE 170 (486)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------C-------------------C-----------------------C--------HHHHccCCCeEECCcCcHH
Confidence 0 0 0 0123566889999999999
Q ss_pred HHHHHHHHcCCcEEEEEcCCCcEEEEEehHHHHHHHH
Q 016003 354 AVMIQAIAHRVTYVWVIEDDCTLTGIVTFSDLLKVFR 390 (397)
Q Consensus 354 ~v~~~m~~~~i~rl~VVd~~~~lvGvVt~~DIl~~l~ 390 (397)
++++.|.+++++++||||++|+++|+||..||++.+.
T Consensus 171 eal~~m~~~~~~~lpVVde~g~lvGiiT~~Dil~~~~ 207 (486)
T 2cu0_A 171 EALKIMIENRIDRLPVVDERGKLVGLITMSDLVARKK 207 (486)
T ss_dssp ------------------------------------C
T ss_pred HHHHHHHHcCCCEEEEEecCCeEEEEEEHHHHHHhhh
Confidence 9999999999999999999999999999999999863
|
| >1me8_A Inosine-5'-monophosphate dehydrogenase; alpha beta barrel, oxidoreductase; HET: RVP; 1.90A {Tritrichomonas foetus} SCOP: c.1.5.1 PDB: 1ak5_A* 1me7_A* 1me9_A* 1meh_A* 1mei_A* 1mew_A* 1pvn_A* 1lrt_A* | Back alignment and structure |
|---|
Probab=99.02 E-value=9.9e-11 Score=120.96 Aligned_cols=162 Identities=14% Similarity=0.076 Sum_probs=22.2
Q ss_pred CCCeEEEeCChhHHHHHHHHhhCCCceEEEEccCCCCCCCCCCCCCCCeEEEEEehhHHHHHHhhcCCCCChhhhhcCCh
Q 016003 17 KPALRALSISAAIADALSALKNSDESFISVWDCNCCSNHRKLGDACECQCVGKVCMVDVICYLCKDSNSLSPSLALKQPV 96 (397)
Q Consensus 17 k~~li~v~~~~tv~~Al~~L~~~~I~s~PV~d~~~~~~~~~~~~~~~~~~vGiv~~~Dil~~l~~~~~l~~~~~~~~~~V 96 (397)
.++++++++++|+.+|+++|.+++++.+||+|.++. .++++|+|+.+|++.. . ...+.+|
T Consensus 104 ~~~~~~v~~~~tv~eal~~m~~~~~s~~pVvd~~~~----------~g~lvGiVt~~Dl~~~--~--------~~~~~~V 163 (503)
T 1me8_A 104 VVSDSNVKPDQTFADVLAISQRTTHNTVAVTDDGTP----------HGVLLGLVTQRDYPID--L--------TQTETKV 163 (503)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccCCeEECCCCcHHHHHHHHHHcCceEEEEEECCCc----------CCeEEEEEEHHHHHhh--h--------ccccCcH
Confidence 357899999999999999999999999999996210 1689999999999864 1 1235789
Q ss_pred hhhccCCCCCceEEeCCCCCHHHHHHHHh-cCCceEEEeccCcchhhhhhhcccccccccCCCCceeeeecHHHHHHHHH
Q 016003 97 SVLLPQLLPPLVMHVEPSCSLLEAMDLML-GGAQNLVVPIKNRLSIKRKQQQKLSSSSLTNHNGREFCWLTQEDIIRFIL 175 (397)
Q Consensus 97 ~~lm~~~~~~~~~~V~~~~sL~~al~~m~-~g~~r~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IITq~DIi~~l~ 175 (397)
+++|... ..++++.+++++.+|++.|. +++++++|++++ ++.+|+||..||++.+.
T Consensus 164 ~diM~~~--~~~~tv~~~~sl~ea~~~m~~~~i~~lpVVDe~---------------------g~lvGiIT~~Dil~~~~ 220 (503)
T 1me8_A 164 SDMMTPF--SKLVTAHQDTKLSEANKIIWEKKLNALPIIDDD---------------------QHLRYIVFRKDYDRSQV 220 (503)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHhCCC--CCCEEEcCCCcHHHHHHHHHHcCCCEEEEEcCC---------------------CeEEEEEEecHHHHhhh
Confidence 9999631 23789999999999999999 789999988632 45789999999999875
Q ss_pred hccCCCCCCccCCccccCCCCcCeEEEeCCCcHHHHHHHHHhcCCCCCEEEEEcCCCc
Q 016003 176 SSISLFSPIPALSIDSLGIISTDVVAVDYHSPASLALEAISRSLFDQTSVAVVDSDGF 233 (397)
Q Consensus 176 ~~~~~l~~l~~~ti~~L~~~~~~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~ 233 (397)
..... ...... ++. -..+.. ....+.++.|.++++ ..++|-..+|.
T Consensus 221 ~~~~~-----~d~~~~--l~v--~a~v~~-~~~~e~~~~l~e~gv--~~l~Vd~~~g~ 266 (503)
T 1me8_A 221 CHNEL-----VDSQKR--YLV--GAGINT-RDFRERVPALVEAGA--DVLCIDSSDGF 266 (503)
T ss_dssp -CCCC-----BCTTSC--BCC--EEEECS-SSHHHHHHHHHHHTC--SEEEECCSCCC
T ss_pred cccch-----hccccc--ccc--ccccCc-hhHHHHHHHHHhhhc--cceEEecccCc
Confidence 32111 011111 111 133445 667778999999999 76555333343
|
| >1zfj_A Inosine monophosphate dehydrogenase; IMPDH, CBS domains, oxidoreductase; HET: IMP; 1.90A {Streptococcus pyogenes} SCOP: c.1.5.1 d.37.1.1 | Back alignment and structure |
|---|
Probab=99.02 E-value=4.4e-09 Score=108.14 Aligned_cols=118 Identities=14% Similarity=0.113 Sum_probs=99.6
Q ss_pred hhhhhhcCCCCeEEEeCChhHHHHHHHHhhCCCceEEEEc--cCCCCCCCCCCCCCCCeEEEEEehhHHHHHHhhcCCCC
Q 016003 9 EVSDLCLGKPALRALSISAAIADALSALKNSDESFISVWD--CNCCSNHRKLGDACECQCVGKVCMVDVICYLCKDSNSL 86 (397)
Q Consensus 9 ~v~dl~~~k~~li~v~~~~tv~~Al~~L~~~~I~s~PV~d--~~~~~~~~~~~~~~~~~~vGiv~~~Dil~~l~~~~~l~ 86 (397)
++.++|. ++++++++++|+.+|++.|.++++..+||+| . +++++|+|+.+|++.. .
T Consensus 91 ~~~~im~--~~~~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~~-------------~~~lvGivt~~Dl~~~--~----- 148 (491)
T 1zfj_A 91 RSENGVI--IDPFFLTPEHKVSEAEELMQRYRISGVPIVETLA-------------NRKLVGIITNRDMRFI--S----- 148 (491)
T ss_dssp HHTTTTS--SSCCCBCSSSBHHHHHHHHHHTTCSEEEEESCTT-------------TCBEEEEEEHHHHHHC--S-----
T ss_pred hHHhcCc--CCCeEECCCCcHHHHHHHHHHcCCCEEEEEEeCC-------------CCEEEEEEEHHHHhhh--c-----
Confidence 3567774 6789999999999999999999999999998 4 3689999999999853 1
Q ss_pred ChhhhhcCChhhhccCCCCCceEEeCCCCCHHHHHHHHh-cCCceEEEeccCcchhhhhhhcccccccccCCCCceeeee
Q 016003 87 SPSLALKQPVSVLLPQLLPPLVMHVEPSCSLLEAMDLML-GGAQNLVVPIKNRLSIKRKQQQKLSSSSLTNHNGREFCWL 165 (397)
Q Consensus 87 ~~~~~~~~~V~~lm~~~~~~~~~~V~~~~sL~~al~~m~-~g~~r~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~II 165 (397)
..+.+++++|.. .+++++.+++++.++++.|. +++++++|++++ ++.+|+|
T Consensus 149 ----~~~~~v~~im~~---~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~---------------------g~lvGiv 200 (491)
T 1zfj_A 149 ----DYNAPISEHMTS---EHLVTAAVGTDLETAERILHEHRIEKLPLVDNS---------------------GRLSGLI 200 (491)
T ss_dssp ----CSSSBTTTSCCC---SCCCCEETTCCHHHHHHHHHHTTCSEEEEECTT---------------------SBEEEEE
T ss_pred ----cCCCcHHHHcCC---CCCEEECCCCCHHHHHHHHHHcCCCEEEEEcCC---------------------CcEEEEE
Confidence 135689999964 13789999999999999999 899999998632 4678999
Q ss_pred cHHHHHHHHHh
Q 016003 166 TQEDIIRFILS 176 (397)
Q Consensus 166 Tq~DIi~~l~~ 176 (397)
|+.||++.+.+
T Consensus 201 t~~Dil~~~~~ 211 (491)
T 1zfj_A 201 TIKDIEKVIEF 211 (491)
T ss_dssp EHHHHHHHHHC
T ss_pred EHHHHHHHHhc
Confidence 99999999874
|
| >3ghd_A A cystathionine beta-synthase domain protein FUSE ribbon-like domain; PF1953,APC40009,cystathionine beta-synthase domain protein; 1.81A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.00 E-value=5.1e-10 Score=84.69 Aligned_cols=48 Identities=25% Similarity=0.278 Sum_probs=44.7
Q ss_pred cEEeCCCCcHHHHHHHHHHcCCcEEEEEcCCCcEEEEEehHHHHHHHHH
Q 016003 343 AIVCHPTSSLMAVMIQAIAHRVTYVWVIEDDCTLTGIVTFSDLLKVFRK 391 (397)
Q Consensus 343 ~it~~~~~sl~~v~~~m~~~~i~rl~VVd~~~~lvGvVt~~DIl~~l~~ 391 (397)
++||+|++|+.+|+++|.+++++++||+|+ |+++||||.+||++.+..
T Consensus 2 ~vtv~p~~tv~ea~~~M~~~~i~~~~V~d~-~~lvGIvT~~Di~~~~~~ 49 (70)
T 3ghd_A 2 AIVVQPKDTVDRVAKILSRNKAGSAVVMEG-DEILGVVTERDILDKVVA 49 (70)
T ss_dssp EEEECTTCBHHHHHHHHHHTTCSEEEEEET-TEEEEEEEHHHHHHHTTT
T ss_pred CEEECCCCcHHHHHHHHHHcCCCEEEEEEC-CEEEEEEEHHHHHHHHHh
Confidence 689999999999999999999999999986 799999999999987643
|
| >1vrd_A Inosine-5'-monophosphate dehydrogenase; TM1347, structural G joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.18A {Thermotoga maritima} SCOP: c.1.5.1 | Back alignment and structure |
|---|
Probab=98.90 E-value=6.2e-10 Score=114.68 Aligned_cols=117 Identities=18% Similarity=0.181 Sum_probs=5.6
Q ss_pred hhhhhcCCCCeEEEeCChhHHHHHHHHhhCCCceEEEEccCCCCCCCCCCCCCCCeEEEEEehhHHHHHHhhcCCCCChh
Q 016003 10 VSDLCLGKPALRALSISAAIADALSALKNSDESFISVWDCNCCSNHRKLGDACECQCVGKVCMVDVICYLCKDSNSLSPS 89 (397)
Q Consensus 10 v~dl~~~k~~li~v~~~~tv~~Al~~L~~~~I~s~PV~d~~~~~~~~~~~~~~~~~~vGiv~~~Dil~~l~~~~~l~~~~ 89 (397)
+.++|. ++++++++++|+.+|+++|.++++..+||+|. +++++|+|+..|+... .
T Consensus 97 ~~~iM~--~~~~~v~~~~tv~ea~~~m~~~~~~~~pVvd~-------------~~~lvGivt~~Dl~~~--~-------- 151 (494)
T 1vrd_A 97 TENGII--YDPITVTPDMTVKEAIDLMAEYKIGGLPVVDE-------------EGRLVGLLTNRDVRFE--K-------- 151 (494)
T ss_dssp C-------------------------------------------------------------------------------
T ss_pred HhhcCc--cCCeEECCCCCHHHHHHHHHHcCceEEEEEcC-------------CCEEEEEEEHHHHHhh--c--------
Confidence 566673 57899999999999999999999999999996 3689999999999852 1
Q ss_pred hhhcCChhhhccCCCCCceEEeCCCCCHHHHHHHHh-cCCceEEEeccCcchhhhhhhcccccccccCCCCceeeeecHH
Q 016003 90 LALKQPVSVLLPQLLPPLVMHVEPSCSLLEAMDLML-GGAQNLVVPIKNRLSIKRKQQQKLSSSSLTNHNGREFCWLTQE 168 (397)
Q Consensus 90 ~~~~~~V~~lm~~~~~~~~~~V~~~~sL~~al~~m~-~g~~r~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IITq~ 168 (397)
..+.+|+++|... .+++++.+++++.++++.|. +++++++|++++ ++.+|+||..
T Consensus 152 -~~~~~v~~im~~~--~~~~~v~~~~~l~ea~~~m~~~~~~~lpVVd~~---------------------g~lvGiIt~~ 207 (494)
T 1vrd_A 152 -NLSKKIKDLMTPR--EKLIVAPPDISLEKAKEILHQHRIEKLPLVSKD---------------------NKLVGLITIK 207 (494)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred -CCCCcHHHHhCCC--CCCeEECCCCCHHHHHHHHHHcCCcEEEEEcCC---------------------CeEEEEEEHH
Confidence 1356899999741 13889999999999999999 789999988632 4678999999
Q ss_pred HHHHHHH
Q 016003 169 DIIRFIL 175 (397)
Q Consensus 169 DIi~~l~ 175 (397)
|+++.+.
T Consensus 208 Dll~~~~ 214 (494)
T 1vrd_A 208 DIMSVIE 214 (494)
T ss_dssp -CHHHHT
T ss_pred HHHhhhc
Confidence 9999975
|
| >4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor} | Back alignment and structure |
|---|
Probab=98.84 E-value=1.9e-09 Score=111.08 Aligned_cols=114 Identities=16% Similarity=0.207 Sum_probs=82.7
Q ss_pred hhhhccCCCCCceEEeCCCCCHHHHHHHHh-cCCceEEEeccCcchhhhhhhcccccccccCCCCceeeeecHHHHHHHH
Q 016003 96 VSVLLPQLLPPLVMHVEPSCSLLEAMDLML-GGAQNLVVPIKNRLSIKRKQQQKLSSSSLTNHNGREFCWLTQEDIIRFI 174 (397)
Q Consensus 96 V~~lm~~~~~~~~~~V~~~~sL~~al~~m~-~g~~r~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IITq~DIi~~l 174 (397)
+.++|..+ ++++++++++.+++++|. +++.+++|.+++ ++++||||..|+. +
T Consensus 91 ~~~~m~~d----~v~v~~~~tv~ea~~~m~~~~~s~~PVvd~~---------------------~~lvGiVt~rDL~-~- 143 (496)
T 4fxs_A 91 FEAGVVTH----PVTVRPEQTIADVMELTHYHGFAGFPVVTEN---------------------NELVGIITGRDVR-F- 143 (496)
T ss_dssp CCC--CBC----CCCBCSSSBHHHHHHHHTSSCCCEEEEECSS---------------------SBEEEEEEHHHHT-T-
T ss_pred cccccccC----ceEECCCCCHHHHHHHHHHcCCcEEEEEccC---------------------CEEEEEEEHHHHh-h-
Confidence 35566544 788999999999999999 789999998632 4688999999985 1
Q ss_pred HhccCCCCCCccCCccccCCCC-c-CeEEEeCCCcHHHHHHHHHhcCCCCCEEEEEcCCCcEEEeeccCcccCcc
Q 016003 175 LSSISLFSPIPALSIDSLGIIS-T-DVVAVDYHSPASLALEAISRSLFDQTSVAVVDSDGFLIGEISPSTLGCCD 247 (397)
Q Consensus 175 ~~~~~~l~~l~~~ti~~L~~~~-~-~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~is~~dl~~~~ 247 (397)
..-...++.+ +|+ + +++++++++++.+|+++|.++++ ..+||||++|+++|+||..||.+..
T Consensus 144 -------~~~~~~~v~d--iM~p~~~~vtv~~~~~l~ea~~~m~~~~i--~~lpVVDe~G~l~GiIT~~DIl~~~ 207 (496)
T 4fxs_A 144 -------VTDLTKSVAA--VMTPKERLATVKEGATGAEVQEKMHKARV--EKILVVNDEFQLKGMITAKDFHKAE 207 (496)
T ss_dssp -------CCCTTSBGGG--TSEEGGGCCEEECC----CGGGTCC---C--CCEEEECTTSBCCEEECCC-----C
T ss_pred -------cccCCCcHHH--HhcCCCCCEEECCCCCHHHHHHHHHHcCC--CEEEEEcCCCCEEEeehHhHHHHhh
Confidence 1123556766 788 5 59999999999999999999999 9999999999999999999998843
|
| >4avf_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase; 2.23A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=98.79 E-value=2.7e-09 Score=109.81 Aligned_cols=117 Identities=15% Similarity=0.052 Sum_probs=2.1
Q ss_pred hhhhhhcCCCCeEEEeCChhHHHHHHHHhhCCCceEEEEccCCCCCCCCCCCCCCCeEEEEEehhHHHHHHhhcCCCCCh
Q 016003 9 EVSDLCLGKPALRALSISAAIADALSALKNSDESFISVWDCNCCSNHRKLGDACECQCVGKVCMVDVICYLCKDSNSLSP 88 (397)
Q Consensus 9 ~v~dl~~~k~~li~v~~~~tv~~Al~~L~~~~I~s~PV~d~~~~~~~~~~~~~~~~~~vGiv~~~Dil~~l~~~~~l~~~ 88 (397)
++.++|. ++++++++++|+.+|+++|.+++++.+||+| + ++++|+|+.+|+...
T Consensus 89 ~~~~~m~--~~~v~v~~~~tv~ea~~~m~~~~~s~~pVvd-~-------------g~lvGIVt~rDl~~~---------- 142 (490)
T 4avf_A 89 KHETAIV--RDPVTVTPSTKIIELLQMAREYGFSGFPVVE-Q-------------GELVGIVTGRDLRVK---------- 142 (490)
T ss_dssp HCCC----------------------------------------------------------------------------
T ss_pred ccccCcc--cCceEeCCCCcHHHHHHHHHHhCCCEEEEEE-C-------------CEEEEEEEhHHhhhc----------
Confidence 3556664 5678999999999999999999999999999 3 589999999998521
Q ss_pred hhhhcCChhhhccCCCCCceEEeCCCCCHHHHHHHHh-cCCceEEEeccCcchhhhhhhcccccccccCCCCceeeeecH
Q 016003 89 SLALKQPVSVLLPQLLPPLVMHVEPSCSLLEAMDLML-GGAQNLVVPIKNRLSIKRKQQQKLSSSSLTNHNGREFCWLTQ 167 (397)
Q Consensus 89 ~~~~~~~V~~lm~~~~~~~~~~V~~~~sL~~al~~m~-~g~~r~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IITq 167 (397)
...+.+|+++|.. ..+++++.+++++.+++++|. +++++++|++++ ++++|+||.
T Consensus 143 -~~~~~~V~~vMtp--~~~~vtv~~~~~l~ea~~~m~~~~i~~lpVVDe~---------------------g~lvGiIT~ 198 (490)
T 4avf_A 143 -PNAGDTVAAIMTP--KDKLVTAREGTPLEEMKAKLYENRIEKMLVVDEN---------------------FYLRGLVTF 198 (490)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred -cccCCcHHHHhcc--CCCCEEECCCCcHHHHHHHHHHcCCCEEEEEcCC---------------------CcEEEEEeh
Confidence 1235689999962 124899999999999999999 789999988643 467889999
Q ss_pred HHHHHHHH
Q 016003 168 EDIIRFIL 175 (397)
Q Consensus 168 ~DIi~~l~ 175 (397)
.||++...
T Consensus 199 ~Dil~~~~ 206 (490)
T 4avf_A 199 RDIEKAKT 206 (490)
T ss_dssp --------
T ss_pred HHhhhhcc
Confidence 99998864
|
| >4af0_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase, GTP biosynthesis, drug resistance; HET: MOA IMP; 2.20A {Cryptococcus neoformans} PDB: 4af0_B* | Back alignment and structure |
|---|
Probab=98.75 E-value=9.4e-10 Score=112.38 Aligned_cols=109 Identities=16% Similarity=0.176 Sum_probs=0.0
Q ss_pred CeEEEeCChhHHHHHHHHhhCCCceEEEEccCCCCCCCCCCCCCCCeEEEEEehhHHHHHHhhcCCCCChhhhhcCChhh
Q 016003 19 ALRALSISAAIADALSALKNSDESFISVWDCNCCSNHRKLGDACECQCVGKVCMVDVICYLCKDSNSLSPSLALKQPVSV 98 (397)
Q Consensus 19 ~li~v~~~~tv~~Al~~L~~~~I~s~PV~d~~~~~~~~~~~~~~~~~~vGiv~~~Dil~~l~~~~~l~~~~~~~~~~V~~ 98 (397)
..+++.|+.||.+|+++|.+++|+.+||++... .+++++||||.+|+- | + ..+++|++
T Consensus 147 dPvtl~P~~Tv~da~~l~~~~~isgvpVvd~g~----------~~~kLvGIvT~RD~r-f--~---------d~~~~V~e 204 (556)
T 4af0_A 147 DPLCLGPDATVGDVLEIKAKFGFCGVPITETGE----------PDSKLLGIVTGRDVQ-F--Q---------DAETPIKS 204 (556)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCeEcCCCCCHHHHHHHHHHhCCCccccccccC----------cCCEEEEEEeccccc-c--c---------ccceEhhh
Confidence 468999999999999999999999999999522 147899999999963 3 1 12578999
Q ss_pred hccCCCCCceEEeCCCCCHHHHHHHHh-cCCceEEEeccCcchhhhhhhcccccccccCCCCceeeeecHHHHHHHH
Q 016003 99 LLPQLLPPLVMHVEPSCSLLEAMDLML-GGAQNLVVPIKNRLSIKRKQQQKLSSSSLTNHNGREFCWLTQEDIIRFI 174 (397)
Q Consensus 99 lm~~~~~~~~~~V~~~~sL~~al~~m~-~g~~r~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IITq~DIi~~l 174 (397)
+|... ++++..+.++.+|.++|. +++.++||++++ +.++|+||..|+.+.-
T Consensus 205 vMT~~----lvt~~~~~~leeA~~iL~~~kieklpVVd~~---------------------g~LvGlIT~kDi~k~~ 256 (556)
T 4af0_A 205 VMTTE----VVTGSSPITLEKANSLLRETKKGKLPIVDSN---------------------GHLVSLVARSDLLKNQ 256 (556)
T ss_dssp -----------------------------------------------------------------------------
T ss_pred hcccc----eEEecCCCCHHHHHHHHHHccccceeEEccC---------------------CcEEEEEEechhhhhh
Confidence 99854 999999999999999999 788999888643 4577899999998764
|
| >1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A* | Back alignment and structure |
|---|
Probab=98.64 E-value=1.8e-09 Score=111.69 Aligned_cols=120 Identities=13% Similarity=0.096 Sum_probs=66.8
Q ss_pred ChhhhccCCCCCceEEeCCCCCHHHHHHHHh-cCCceEEEeccCcchhhhhhhcccccccccCCCCceeeeecHHHHHHH
Q 016003 95 PVSVLLPQLLPPLVMHVEPSCSLLEAMDLML-GGAQNLVVPIKNRLSIKRKQQQKLSSSSLTNHNGREFCWLTQEDIIRF 173 (397)
Q Consensus 95 ~V~~lm~~~~~~~~~~V~~~~sL~~al~~m~-~g~~r~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IITq~DIi~~ 173 (397)
.+.++|... ++++.+++++.+|+++|. +++++++|++++. .+++.+||||..|+.+.
T Consensus 109 ~~~~im~~~----~~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~~------------------~~~~lvGiVt~~Dl~~~ 166 (514)
T 1jcn_A 109 NFEQGFITD----PVVLSPSHTVGDVLEAKMRHGFSGIPITETGT------------------MGSKLVGIVTSRDIDFL 166 (514)
T ss_dssp TCCTTSCSS----CCCCCC-----------------CEESCC--------------------------CCEECTTTTC--
T ss_pred hhhhccccC----CEEECCCCCHHHHHHHHHhcCCCEEEEEeCCC------------------cCCEEEEEEEHHHHHhh
Confidence 356777543 778999999999999999 7888888875321 02467899999998653
Q ss_pred HHhccCCCCCCccCCccccCCCCc--CeEEEeCCCcHHHHHHHHHhcCCCCCEEEEEcCCCcEEEeeccCcccCcc
Q 016003 174 ILSSISLFSPIPALSIDSLGIIST--DVVAVDYHSPASLALEAISRSLFDQTSVAVVDSDGFLIGEISPSTLGCCD 247 (397)
Q Consensus 174 l~~~~~~l~~l~~~ti~~L~~~~~--~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~is~~dl~~~~ 247 (397)
. . .....++.+ +|++ +++++.+++++.+|+++|.++++ ..+||||++|+++|+||.+||.+..
T Consensus 167 ~-~------~~~~~~v~~--vm~~~~~~~tv~~~~~l~ea~~~m~~~~~--~~lpVVd~~g~lvGiIt~~Dll~~~ 231 (514)
T 1jcn_A 167 A-E------KDHTTLLSE--VMTPRIELVVAPAGVTLKEANEILQRSKK--GKLPIVNDCDELVAIIARTDLKKNR 231 (514)
T ss_dssp -----------------------CCBCCCCEETTCCSTTTTTHHHHHTC--SCCCEESSSSCCC----CCCCSSCC
T ss_pred h-h------ccCCCCHHH--HhCCCCCCeEECCCCCHHHHHHHHHHcCC--CcccEECCCCeEEEEEEHHHHHHHh
Confidence 1 0 112455655 7888 99999999999999999999999 9999999999999999999998743
|
| >2cu0_A Inosine-5'-monophosphate dehydrogenase; structural genomics, pyrococcus horikoshii OT3, riken structural genomics/PROT initiative, RSGI; HET: XMP; 2.10A {Pyrococcus horikoshii} SCOP: c.1.5.1 | Back alignment and structure |
|---|
Probab=98.50 E-value=1.2e-08 Score=104.86 Aligned_cols=103 Identities=23% Similarity=0.278 Sum_probs=0.0
Q ss_pred eEEeCCCCCHHHHHHHHh-cCCceEEEeccCcchhhhhhhcccccccccCCCCceeeeecHHHHHHHHHhccCCCCCCcc
Q 016003 108 VMHVEPSCSLLEAMDLML-GGAQNLVVPIKNRLSIKRKQQQKLSSSSLTNHNGREFCWLTQEDIIRFILSSISLFSPIPA 186 (397)
Q Consensus 108 ~~~V~~~~sL~~al~~m~-~g~~r~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IITq~DIi~~l~~~~~~l~~l~~ 186 (397)
++++.+++++.++++.|. ++..+++|.++ ++++|+||..|++. . ..
T Consensus 103 ~~~v~~~~tv~ea~~~~~~~~~~~~pVvd~----------------------~~lvGivt~~Dl~~---~--------~~ 149 (486)
T 2cu0_A 103 VITIAPDETVDFALFLMEKHGIDGLPVVED----------------------EKVVGIITKKDIAA---R--------EG 149 (486)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ceEECCCCCHHHHHHHHHHcCCcEEEEEEC----------------------CEEEEEEEHHHhcc---C--------CC
Confidence 788999999999999998 67888888753 25678999999875 1 23
Q ss_pred CCccccCCCCcCeEEEeCCCcHHHHHHHHHhcCCCCCEEEEEcCCCcEEEeeccCcccCcc
Q 016003 187 LSIDSLGIISTDVVAVDYHSPASLALEAISRSLFDQTSVAVVDSDGFLIGEISPSTLGCCD 247 (397)
Q Consensus 187 ~ti~~L~~~~~~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~is~~dl~~~~ 247 (397)
.++.+ +|+++++++++++++.++++.|.++++ ..+||||++|+++|+||.+||.+..
T Consensus 150 ~~v~~--im~~~~~~v~~~~~l~eal~~m~~~~~--~~lpVVde~g~lvGiiT~~Dil~~~ 206 (486)
T 2cu0_A 150 KLVKE--LMTKEVITVPESIEVEEALKIMIENRI--DRLPVVDERGKLVGLITMSDLVARK 206 (486)
T ss_dssp -------------------------------------------------------------
T ss_pred CCHHH--HccCCCeEECCcCcHHHHHHHHHHcCC--CEEEEEecCCeEEEEEEHHHHHHhh
Confidence 45655 788899999999999999999999999 9999999999999999999998843
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 397 | ||||
| d2v8qe1 | 145 | d.37.1.1 (E:182-326) 5'-AMP-activated protein kina | 2e-06 | |
| d1jr1a4 | 120 | d.37.1.1 (A:113-232) Type II inosine monophosphate | 3e-05 | |
| d3ddja2 | 135 | d.37.1.1 (A:1-135) Uncharacterized protein SSO3205 | 4e-05 | |
| d1vr9a3 | 121 | d.37.1.1 (A:1-121) Hypothetical protein TM0892, CB | 1e-04 | |
| d2o16a3 | 139 | d.37.1.1 (A:20-158) Hypothetical protein VC0737 {V | 2e-04 | |
| d2yzia1 | 132 | d.37.1.1 (A:4-135) Uncharacterized protein PH0107 | 2e-04 | |
| d2yzqa1 | 156 | d.37.1.1 (A:123-278) Uncharacterized protein PH178 | 4e-04 | |
| d2nyca1 | 140 | d.37.1.1 (A:181-320) Nuclear protein SNF4 {Baker's | 7e-04 | |
| d1yava3 | 132 | d.37.1.1 (A:13-144) Hypothetical protein YkuL {Bac | 0.001 | |
| d1zfja4 | 126 | d.37.1.1 (A:95-220) Type II inosine monophosphate | 0.001 | |
| d2ooxe2 | 153 | d.37.1.1 (E:182-334) Uncharacterized protein C1556 | 0.002 | |
| d2yzqa2 | 122 | d.37.1.1 (A:1-122) Uncharacterized protein PH1780 | 0.002 | |
| d2ooxe1 | 179 | d.37.1.1 (E:3-181) Uncharacterized protein C1556.0 | 0.004 |
| >d2v8qe1 d.37.1.1 (E:182-326) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 145 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CBS-domain pair superfamily: CBS-domain pair family: CBS-domain pair domain: 5'-AMP-activated protein kinase subunit gamma-1, AMPKg species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 44.8 bits (105), Expect = 2e-06
Identities = 20/119 (16%), Positives = 43/119 (36%), Gaps = 4/119 (3%)
Query: 271 PPEDLVRVVKERLKDKGLEGMLEHFDMSSSLMPYLSTSSSSDEESTATSKLTRSGKHSRS 330
V V + + + + Y S D + A K + S +
Sbjct: 26 RTTTPVYVALGIFVQHRVSALPVVDEKGRVVDIY----SKFDVINLAAEKTYNNLDVSVT 81
Query: 331 MSYSARMVRRAEAIVCHPTSSLMAVMIQAIAHRVTYVWVIEDDCTLTGIVTFSDLLKVF 389
+ R + C+ +L A++ + + V + V+++ + GIV+ SD+L+
Sbjct: 82 KALQHRSHYFEGVLKCYLHETLEAIINRLVEAEVHRLVVVDEHDVVKGIVSLSDILQAL 140
|
| >d1jr1a4 d.37.1.1 (A:113-232) Type II inosine monophosphate dehydrogenase CBS domains {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} Length = 120 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CBS-domain pair superfamily: CBS-domain pair family: CBS-domain pair domain: Type II inosine monophosphate dehydrogenase CBS domains species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Score = 40.9 bits (95), Expect = 3e-05
Identities = 17/117 (14%), Positives = 35/117 (29%), Gaps = 9/117 (7%)
Query: 271 PPEDLVRVVKERLKDKGLEGMLEHFDMSSSLMPYLSTSSSSDEESTATSKLTRSGKHSRS 330
P+D VR V E G G+ ++ + +
Sbjct: 10 SPKDRVRDVFEAKARHGFCGIPITDTGRMGSRLV---------GIISSRDIDFLKEEEHD 60
Query: 331 MSYSARMVRRAEAIVCHPTSSLMAVMIQAIAHRVTYVWVIEDDCTLTGIVTFSDLLK 387
M +R + +V +L + + ++ ++ L I+ +DL K
Sbjct: 61 RFLEEIMTKREDLVVAPAGITLKEANEILQRSKKGKLPIVNENDELVAIIARTDLKK 117
|
| >d3ddja2 d.37.1.1 (A:1-135) Uncharacterized protein SSO3205 {Sulfolobus solfataricus [TaxId: 2287]} Length = 135 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CBS-domain pair superfamily: CBS-domain pair family: CBS-domain pair domain: Uncharacterized protein SSO3205 species: Sulfolobus solfataricus [TaxId: 2287]
Score = 40.8 bits (94), Expect = 4e-05
Identities = 15/124 (12%), Positives = 41/124 (33%), Gaps = 3/124 (2%)
Query: 271 PPEDLVRVVKERLKDKGLEGMLEHFDMSSSLMPYLSTSSSSDEESTATSKLTRSGKHSRS 330
ED + +++ + G+ ++ + L+ S+ + + G
Sbjct: 15 SKEDRLGSAFKKINEGGIGRIIVANEKIEGLLTTRDLLSTVESYCKDSC---SQGDLYHI 71
Query: 331 MSYSARMVRRAEAIVCHPTSSLMAVMIQAIAHRVTYVWVIEDDCTLTGIVTFSDLLKVFR 390
+ + + TS + + + V++ + GIVT + L +++
Sbjct: 72 STTPIIDYMTPNPVTVYNTSDEFTAINIMVTRNFGSLPVVDINDKPVGIVTEREFLLLYK 131
Query: 391 KHLE 394
E
Sbjct: 132 DLDE 135
|
| >d1vr9a3 d.37.1.1 (A:1-121) Hypothetical protein TM0892, CBS tandem {Thermotoga maritima [TaxId: 2336]} Length = 121 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CBS-domain pair superfamily: CBS-domain pair family: CBS-domain pair domain: Hypothetical protein TM0892, CBS tandem species: Thermotoga maritima [TaxId: 2336]
Score = 39.1 bits (90), Expect = 1e-04
Identities = 13/82 (15%), Positives = 30/82 (36%)
Query: 312 DEESTATSKLTRSGKHSRSMSYSARMVRRAEAIVCHPTSSLMAVMIQAIAHRVTYVWVIE 371
D E + + + S H ++ ++ + H+ Y+ V++
Sbjct: 39 DREGHFRGVVNKEDLLDLDLDSSVFNKVSLPDFFVHEEDNITHALLLFLEHQEPYLPVVD 98
Query: 372 DDCTLTGIVTFSDLLKVFRKHL 393
++ L G V+ D L+ + L
Sbjct: 99 EEMRLKGAVSLHDFLEALIEAL 120
|
| >d2o16a3 d.37.1.1 (A:20-158) Hypothetical protein VC0737 {Vibrio cholerae [TaxId: 666]} Length = 139 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CBS-domain pair superfamily: CBS-domain pair family: CBS-domain pair domain: Hypothetical protein VC0737 species: Vibrio cholerae [TaxId: 666]
Score = 39.1 bits (90), Expect = 2e-04
Identities = 19/124 (15%), Positives = 37/124 (29%), Gaps = 4/124 (3%)
Query: 271 PPEDLVRVVKERLKDKGLEGMLEHFDMSSSLMPYLSTSSSSDEESTATSKLTRSGKHSRS 330
+ K ++ + + S + +S + S +
Sbjct: 16 LRTHTLNDAKHLMEALDIRHVPIVDANK---KLLGIVSQRDLLAAQESSLQRSAQGDSLA 72
Query: 331 MSYSARMVRRAEAIVCHPTSSLMAVMIQAIAHRVTYVWVIEDDCTLTGIVTFSDLLKVFR 390
V + P + L I H++ + V+ D L GI+T SD + +
Sbjct: 73 FETPLFEVMHTDVTSVAPQAGLKESAIYMQKHKIGCLPVVAKD-VLVGIITDSDFVTIAI 131
Query: 391 KHLE 394
LE
Sbjct: 132 NLLE 135
|
| >d2yzia1 d.37.1.1 (A:4-135) Uncharacterized protein PH0107 {Pyrococcus horikoshii [TaxId: 53953]} Length = 132 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CBS-domain pair superfamily: CBS-domain pair family: CBS-domain pair domain: Uncharacterized protein PH0107 species: Pyrococcus horikoshii [TaxId: 53953]
Score = 38.6 bits (89), Expect = 2e-04
Identities = 22/125 (17%), Positives = 44/125 (35%), Gaps = 12/125 (9%)
Query: 271 PPEDLVRVVKERLKDKGLEGMLEHFDMSSSLMPYLSTSSSSDEESTATSKLTRSGKHSRS 330
P V+ + + + ++ D + T + + R
Sbjct: 19 KPSTSVQEASRLMMEFDVGSLVVINDDGNV-----------VGFFTKSDIIRRVIVPGLP 67
Query: 331 MSYSARMVRRAEAIVCHPTSSLMAVMIQAIAHRVTYVWVIEDDCTLTGIVTFSDLLKVFR 390
+ I + + L V+ + HR+ ++ + E+ + GI T SDLL+ R
Sbjct: 68 YDIPVERIMTRNLITANVNTPLGEVLRKMAEHRIKHILIEEEG-KIVGIFTLSDLLEASR 126
Query: 391 KHLET 395
+ LET
Sbjct: 127 RRLET 131
|
| >d2yzqa1 d.37.1.1 (A:123-278) Uncharacterized protein PH1780 {Pyrococcus horikoshii [TaxId: 53953]} Length = 156 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CBS-domain pair superfamily: CBS-domain pair family: CBS-domain pair domain: Uncharacterized protein PH1780 species: Pyrococcus horikoshii [TaxId: 53953]
Score = 38.4 bits (88), Expect = 4e-04
Identities = 23/145 (15%), Positives = 47/145 (32%), Gaps = 9/145 (6%)
Query: 249 TVAAAITTLSAGDLMAYIDCGGPPEDLVRVVKERLKDKGLEGMLEHFDMSSSLMPYLSTS 308
V +A + + P VV G+ + S + ST
Sbjct: 16 IVWEGTPLKAALKALLLSNSMALP-----VVDSEGNLVGIVDETDLLRDSEIVRIMKSTE 70
Query: 309 SSSDEESTATSKLTRSGKHSRS----MSYSARMVRRAEAIVCHPTSSLMAVMIQAIAHRV 364
++ E + + + + + + IV P ++ V ++ + +
Sbjct: 71 LAASSEEEWILESHPTLLFEKFELQLPNKPVAEIMTRDVIVATPHMTVHEVALKMAKYSI 130
Query: 365 TYVWVIEDDCTLTGIVTFSDLLKVF 389
+ VI + L G++ DLLKV
Sbjct: 131 EQLPVIRGEGDLIGLIRDFDLLKVL 155
|
| >d2nyca1 d.37.1.1 (A:181-320) Nuclear protein SNF4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 140 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CBS-domain pair superfamily: CBS-domain pair family: CBS-domain pair domain: Nuclear protein SNF4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 37.5 bits (86), Expect = 7e-04
Identities = 16/63 (25%), Positives = 24/63 (38%)
Query: 327 HSRSMSYSARMVRRAEAIVCHPTSSLMAVMIQAIAHRVTYVWVIEDDCTLTGIVTFSDLL 386
S + R C L +M RV +V++D L G++T SD+L
Sbjct: 75 LSVGEALMRRSDDFEGVYTCTKNDKLSTIMDNIRKARVHRFFVVDDVGRLVGVLTLSDIL 134
Query: 387 KVF 389
K
Sbjct: 135 KYI 137
|
| >d1yava3 d.37.1.1 (A:13-144) Hypothetical protein YkuL {Bacillus subtilis [TaxId: 1423]} Length = 132 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CBS-domain pair superfamily: CBS-domain pair family: CBS-domain pair domain: Hypothetical protein YkuL species: Bacillus subtilis [TaxId: 1423]
Score = 36.9 bits (84), Expect = 0.001
Identities = 14/136 (10%), Positives = 36/136 (26%), Gaps = 6/136 (4%)
Query: 258 SAGDLMAYIDCGGPPEDLVRVVKERLKDKGLEGMLEHFDMSSSLMPYLSTSSSSDEESTA 317
+ G M + + V + L + + + ++ +
Sbjct: 3 TVGQFMI------EADKVAHVQVGNNLEHALLVLTKTGYTAIPVLDPSYRLHGLIGTNMI 56
Query: 318 TSKLTRSGKHSRSMSYSARMVRRAEAIVCHPTSSLMAVMIQAIAHRVTYVWVIEDDCTLT 377
+ + + + + + + + +V V D+
Sbjct: 57 MNSIFGLERIEFEKLDQITVEEVMLTDIPRLHINDPIMKGFGMVINNGFVCVENDEQVFE 116
Query: 378 GIVTFSDLLKVFRKHL 393
GI T +LK KH+
Sbjct: 117 GIFTRRVVLKELNKHI 132
|
| >d1zfja4 d.37.1.1 (A:95-220) Type II inosine monophosphate dehydrogenase CBS domains {Streptococcus pyogenes [TaxId: 1314]} Length = 126 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CBS-domain pair superfamily: CBS-domain pair family: CBS-domain pair domain: Type II inosine monophosphate dehydrogenase CBS domains species: Streptococcus pyogenes [TaxId: 1314]
Score = 36.0 bits (82), Expect = 0.001
Identities = 9/52 (17%), Positives = 21/52 (40%)
Query: 344 IVCHPTSSLMAVMIQAIAHRVTYVWVIEDDCTLTGIVTFSDLLKVFRKHLET 395
+ + L HR+ + ++++ L+G++T D+ KV
Sbjct: 71 VTAAVGTDLETAERILHEHRIEKLPLVDNSGRLSGLITIKDIEKVIEFPHAA 122
|
| >d2ooxe2 d.37.1.1 (E:182-334) Uncharacterized protein C1556.08c {Schizosaccharomyces pombe [TaxId: 4896]} Length = 153 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CBS-domain pair superfamily: CBS-domain pair family: CBS-domain pair domain: Uncharacterized protein C1556.08c species: Schizosaccharomyces pombe [TaxId: 4896]
Score = 36.5 bits (83), Expect = 0.002
Identities = 13/63 (20%), Positives = 25/63 (39%)
Query: 327 HSRSMSYSARMVRRAEAIVCHPTSSLMAVMIQAIAHRVTYVWVIEDDCTLTGIVTFSDLL 386
S + R C T L + RV ++V++++ L GI++ +D+L
Sbjct: 70 LSVGEALLKRPANFDGVHTCRATDRLDGIFDAIKHSRVHRLFVVDENLKLEGILSLADIL 129
Query: 387 KVF 389
Sbjct: 130 NYI 132
|
| >d2yzqa2 d.37.1.1 (A:1-122) Uncharacterized protein PH1780 {Pyrococcus horikoshii [TaxId: 53953]} Length = 122 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CBS-domain pair superfamily: CBS-domain pair family: CBS-domain pair domain: Uncharacterized protein PH1780 species: Pyrococcus horikoshii [TaxId: 53953]
Score = 35.6 bits (81), Expect = 0.002
Identities = 9/51 (17%), Positives = 19/51 (37%)
Query: 344 IVCHPTSSLMAVMIQAIAHRVTYVWVIEDDCTLTGIVTFSDLLKVFRKHLE 394
V +L + + V V++ GI+T D+++ + E
Sbjct: 71 PVVKENDTLKKAAKLMLEYDYRRVVVVDSKGKPVGILTVGDIIRRYFAKSE 121
|
| >d2ooxe1 d.37.1.1 (E:3-181) Uncharacterized protein C1556.08c {Schizosaccharomyces pombe [TaxId: 4896]} Length = 179 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CBS-domain pair superfamily: CBS-domain pair family: CBS-domain pair domain: Uncharacterized protein C1556.08c species: Schizosaccharomyces pombe [TaxId: 4896]
Score = 35.7 bits (81), Expect = 0.004
Identities = 13/73 (17%), Positives = 23/73 (31%), Gaps = 5/73 (6%)
Query: 327 HSRSMSYSARMVRRAEAIVCHPTSSLMAVMIQAIAHRVTYVWVIEDD-----CTLTGIVT 381
E I HP SLM + R + +I+ D + ++T
Sbjct: 101 LGLREVERKIGAIPPETIYVHPMHSLMDACLAMSKSRARRIPLIDVDGETGSEMIVSVLT 160
Query: 382 FSDLLKVFRKHLE 394
+LK + +
Sbjct: 161 QYRILKFISMNCK 173
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 397 | |||
| d2yzqa1 | 156 | Uncharacterized protein PH1780 {Pyrococcus horikos | 99.86 | |
| d2nyca1 | 140 | Nuclear protein SNF4 {Baker's yeast (Saccharomyces | 99.83 | |
| d2o16a3 | 139 | Hypothetical protein VC0737 {Vibrio cholerae [TaxI | 99.82 | |
| d2v8qe1 | 145 | 5'-AMP-activated protein kinase subunit gamma-1, A | 99.82 | |
| d2v8qe2 | 159 | 5'-AMP-activated protein kinase subunit gamma-1, A | 99.81 | |
| d2ooxe1 | 179 | Uncharacterized protein C1556.08c {Schizosaccharom | 99.81 | |
| d1y5ha3 | 123 | Hypothetical protein Rv2626c {Mycobacterium tuberc | 99.81 | |
| d2ooxe2 | 153 | Uncharacterized protein C1556.08c {Schizosaccharom | 99.81 | |
| d2yzqa2 | 122 | Uncharacterized protein PH1780 {Pyrococcus horikos | 99.81 | |
| d2ouxa2 | 127 | Magnesium transporter MgtE {Enterococcus faecalis | 99.8 | |
| d2yzia1 | 132 | Uncharacterized protein PH0107 {Pyrococcus horikos | 99.8 | |
| d1pvma4 | 142 | Hypothetical protein Ta0289 {Archaeon Thermoplasma | 99.79 | |
| d1zfja4 | 126 | Type II inosine monophosphate dehydrogenase CBS do | 99.79 | |
| d2yvxa2 | 144 | Magnesium transporter MgtE {Thermus thermophilus [ | 99.79 | |
| d2ef7a1 | 127 | Uncharacterized protein ST2348 {Sulfolobus tokodai | 99.79 | |
| d3ddja1 | 141 | Uncharacterized protein SSO3205 {Sulfolobus solfat | 99.78 | |
| d2rc3a1 | 127 | Uncharacterized protein NE2398 {Nitrosomonas europ | 99.78 | |
| d1vr9a3 | 121 | Hypothetical protein TM0892, CBS tandem {Thermotog | 99.78 | |
| d2ooxe1 | 179 | Uncharacterized protein C1556.08c {Schizosaccharom | 99.78 | |
| d1yava3 | 132 | Hypothetical protein YkuL {Bacillus subtilis [TaxI | 99.77 | |
| d1o50a3 | 145 | Hypothetical protein TM0935 {Thermotoga maritima [ | 99.77 | |
| d1jr1a4 | 120 | Type II inosine monophosphate dehydrogenase CBS do | 99.76 | |
| d3ddja2 | 135 | Uncharacterized protein SSO3205 {Sulfolobus solfat | 99.75 | |
| d2d4za3 | 160 | Chloride channel protein, CBS tandem {Marbled elec | 99.75 | |
| d2riha1 | 131 | Uncharacterized protein PAE2072 {Pyrobaculum aerop | 99.75 | |
| d2v8qe2 | 159 | 5'-AMP-activated protein kinase subunit gamma-1, A | 99.74 | |
| d1yava3 | 132 | Hypothetical protein YkuL {Bacillus subtilis [TaxI | 99.73 | |
| d1pbja3 | 120 | Hypothetical protein MTH1622 {Archaeon Methanobact | 99.72 | |
| d2yzqa1 | 156 | Uncharacterized protein PH1780 {Pyrococcus horikos | 99.71 | |
| d1y5ha3 | 123 | Hypothetical protein Rv2626c {Mycobacterium tuberc | 99.71 | |
| d2rc3a1 | 127 | Uncharacterized protein NE2398 {Nitrosomonas europ | 99.69 | |
| d2o16a3 | 139 | Hypothetical protein VC0737 {Vibrio cholerae [TaxI | 99.69 | |
| d2ef7a1 | 127 | Uncharacterized protein ST2348 {Sulfolobus tokodai | 99.68 | |
| d3ddja1 | 141 | Uncharacterized protein SSO3205 {Sulfolobus solfat | 99.67 | |
| d2yzia1 | 132 | Uncharacterized protein PH0107 {Pyrococcus horikos | 99.67 | |
| d2j9la1 | 169 | Chloride channel protein 5, ClC-5 {Human (Homo sap | 99.66 | |
| d1o50a3 | 145 | Hypothetical protein TM0935 {Thermotoga maritima [ | 99.66 | |
| d1pvma4 | 142 | Hypothetical protein Ta0289 {Archaeon Thermoplasma | 99.66 | |
| d2nyca1 | 140 | Nuclear protein SNF4 {Baker's yeast (Saccharomyces | 99.65 | |
| d2v8qe1 | 145 | 5'-AMP-activated protein kinase subunit gamma-1, A | 99.65 | |
| d1pbja3 | 120 | Hypothetical protein MTH1622 {Archaeon Methanobact | 99.64 | |
| d2ooxe2 | 153 | Uncharacterized protein C1556.08c {Schizosaccharom | 99.63 | |
| d3ddja2 | 135 | Uncharacterized protein SSO3205 {Sulfolobus solfat | 99.59 | |
| d2d4za3 | 160 | Chloride channel protein, CBS tandem {Marbled elec | 99.58 | |
| d2j9la1 | 169 | Chloride channel protein 5, ClC-5 {Human (Homo sap | 99.58 | |
| d2yzqa2 | 122 | Uncharacterized protein PH1780 {Pyrococcus horikos | 99.58 | |
| d2riha1 | 131 | Uncharacterized protein PAE2072 {Pyrobaculum aerop | 99.57 | |
| d2ouxa2 | 127 | Magnesium transporter MgtE {Enterococcus faecalis | 99.56 | |
| d2yvxa2 | 144 | Magnesium transporter MgtE {Thermus thermophilus [ | 99.53 | |
| d1vr9a3 | 121 | Hypothetical protein TM0892, CBS tandem {Thermotog | 99.53 | |
| d1zfja4 | 126 | Type II inosine monophosphate dehydrogenase CBS do | 99.51 | |
| d1jr1a4 | 120 | Type II inosine monophosphate dehydrogenase CBS do | 99.45 |
| >d2yzqa1 d.37.1.1 (A:123-278) Uncharacterized protein PH1780 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CBS-domain pair superfamily: CBS-domain pair family: CBS-domain pair domain: Uncharacterized protein PH1780 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=99.86 E-value=6.2e-22 Score=170.92 Aligned_cols=152 Identities=20% Similarity=0.181 Sum_probs=103.5
Q ss_pred CCccccCCCCcCeEEEeCCCcHHHHHHHHHhcCCCCCEEEEEcCCCcEEEeeccCcccCcchhHHHHHhhcChhhhhhhh
Q 016003 187 LSIDSLGIISTDVVAVDYHSPASLALEAISRSLFDQTSVAVVDSDGFLIGEISPSTLGCCDETVAAAITTLSAGDLMAYI 266 (397)
Q Consensus 187 ~ti~~L~~~~~~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~is~~dl~~~~~~~~~~~~~ls~~Dl~~~~ 266 (397)
-+|++ +|+++++++++++|+.+|+++|.++++ +++||+|++|+++|+||..|+.+.... ..........
T Consensus 4 ~~v~~--~m~r~v~~v~~~~~l~~a~~~m~~~~~--~~lPVvd~~~~lvG~it~~Dl~~~~~~-------~~~~~~~~~~ 72 (156)
T d2yzqa1 4 VEIEP--YYQRYVSIVWEGTPLKAALKALLLSNS--MALPVVDSEGNLVGIVDETDLLRDSEI-------VRIMKSTELA 72 (156)
T ss_dssp CBSTT--TSBSCCCCEETTSBHHHHHHHHHTCSS--SEEEEECTTSCEEEEEEGGGGGGCGGG-------CC--------
T ss_pred CCHHH--HhcCCCeEECCcCcHHHHHHHHHHcCC--CEEEEEeCCCCceeEEeeeechhhhcc-------cccccccccc
Confidence 34554 799999999999999999999999999 999999999999999887777653211 0000000000
Q ss_pred ccCCCCchhHHHHHHHhhhcchhhhhhhhccccCCCCCCCCCCCCCccchhhhccccCCCccccccchhhhhcCCccEEe
Q 016003 267 DCGGPPEDLVRVVKERLKDKGLEGMLEHFDMSSSLMPYLSTSSSSDEESTATSKLTRSGKHSRSMSYSARMVRRAEAIVC 346 (397)
Q Consensus 267 ~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~ 346 (397)
.. ..... ..... .. ..+ .. ........+..++|+.+++||
T Consensus 73 ~~------------------~~~~~--~~~~~--~~--------------~~~---~~-~~~~~~~~~v~~~m~~~~~tv 112 (156)
T d2yzqa1 73 AS------------------SEEEW--ILESH--PT--------------LLF---EK-FELQLPNKPVAEIMTRDVIVA 112 (156)
T ss_dssp ----------------------------------------------------------------CCCBGGGTCBSSCCCB
T ss_pred cc------------------hhhhh--hhhhh--hh--------------hhH---HH-hhhcccCCEeehhcccCceEE
Confidence 00 00000 00000 00 000 00 000001223446789999999
Q ss_pred CCCCcHHHHHHHHHHcCCcEEEEEcCCCcEEEEEehHHHHHHH
Q 016003 347 HPTSSLMAVMIQAIAHRVTYVWVIEDDCTLTGIVTFSDLLKVF 389 (397)
Q Consensus 347 ~~~~sl~~v~~~m~~~~i~rl~VVd~~~~lvGvVt~~DIl~~l 389 (397)
+++++|.+++..|.++++|++||+|++|+++||||++||+++|
T Consensus 113 ~~~~~l~~~~~~m~~~~~~~lpVvd~~g~lvGivt~~Dil~~l 155 (156)
T d2yzqa1 113 TPHMTVHEVALKMAKYSIEQLPVIRGEGDLIGLIRDFDLLKVL 155 (156)
T ss_dssp CTTSBHHHHHHHHHHHTCSEEEEEETTTEEEEEEEHHHHGGGG
T ss_pred CcccccHHHHHHHHHcCeeEEEEEeCCCEEEEEEEHHHHHHHh
Confidence 9999999999999999999999999999999999999999986
|
| >d2nyca1 d.37.1.1 (A:181-320) Nuclear protein SNF4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CBS-domain pair superfamily: CBS-domain pair family: CBS-domain pair domain: Nuclear protein SNF4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.83 E-value=1.5e-20 Score=159.66 Aligned_cols=136 Identities=22% Similarity=0.359 Sum_probs=101.5
Q ss_pred CccCCccccCC-CCcCeEEEeCCCcHHHHHHHHHhcCCCCCEEEEEcCCCcEEEeeccCcccCcchhHHHHHhhcChhhh
Q 016003 184 IPALSIDSLGI-ISTDVVAVDYHSPASLALEAISRSLFDQTSVAVVDSDGFLIGEISPSTLGCCDETVAAAITTLSAGDL 262 (397)
Q Consensus 184 l~~~ti~~L~~-~~~~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~is~~dl~~~~~~~~~~~~~ls~~Dl 262 (397)
+..+++.+|++ +.++++++.+++|+.+|+++|.++++ +++||+|++|+++|+ +|.+|+
T Consensus 3 ~~~~~i~~l~~~~~~~v~tv~~~~~v~~a~~~m~~~~~--~~ipVvd~~~~~vG~-------------------it~~Di 61 (140)
T d2nyca1 3 FLKIPIGDLNIITQDNMKSCQMTTPVIDVIQMLTQGRV--SSVPIIDENGYLINV-------------------YEAYDV 61 (140)
T ss_dssp GGGSBGGGSSCCBCSSCCCBCTTSBHHHHHHHHHHHTC--SEEEEECTTCBEEEE-------------------EEHHHH
T ss_pred cccCcHHHhCCccCCCCEEEcCcCcHHHHHHHHHHcCC--cEEEEEecCCeEcce-------------------ehhhHH
Confidence 45688999975 45789999999999999999999999 999999999999999 557777
Q ss_pred hhhhccCCCCchhHHHHHHHhhhcchhhhhhhhccccCCCCCCCCCCCCCccchhhhccccCCCccccccchhhhhcCCc
Q 016003 263 MAYIDCGGPPEDLVRVVKERLKDKGLEGMLEHFDMSSSLMPYLSTSSSSDEESTATSKLTRSGKHSRSMSYSARMVRRAE 342 (397)
Q Consensus 263 ~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (397)
+.++..... ..+ .. ..... + .....+..+
T Consensus 62 ~~~~~~~~~-----------------~~~----~~-----------------~~~~~-------~------~~~~~~~~~ 90 (140)
T d2nyca1 62 LGLIKGGIY-----------------NDL----SL-----------------SVGEA-------L------MRRSDDFEG 90 (140)
T ss_dssp HHHHHTC---------------------C----CS-----------------BHHHH-------H------HHCC-----
T ss_pred HHHHhhccc-----------------ccc----cc-----------------chhhh-------h------hhhhhcccc
Confidence 764421100 000 00 00000 0 000124568
Q ss_pred cEEeCCCCcHHHHHHHHHHcCCcEEEEEcCCCcEEEEEehHHHHHHHHH
Q 016003 343 AIVCHPTSSLMAVMIQAIAHRVTYVWVIEDDCTLTGIVTFSDLLKVFRK 391 (397)
Q Consensus 343 ~it~~~~~sl~~v~~~m~~~~i~rl~VVd~~~~lvGvVt~~DIl~~l~~ 391 (397)
+++|++++++.+++++|.++++|++||||++|+++|+||++||++++..
T Consensus 91 ~~~v~~~~~l~~~~~~~~~~~~~~l~VVd~~~~l~GiIt~~Dii~~l~~ 139 (140)
T d2nyca1 91 VYTCTKNDKLSTIMDNIRKARVHRFFVVDDVGRLVGVLTLSDILKYILL 139 (140)
T ss_dssp -CEECTTSBHHHHHHHHHHHTCSEEEEECTTSBEEEEEEHHHHHHHHHH
T ss_pred cEEECCCCcHHHHHHHHHhcCeeEEEEEeCCCeEEEEEEHHHHHHHHhc
Confidence 8999999999999999999999999999999999999999999999863
|
| >d2o16a3 d.37.1.1 (A:20-158) Hypothetical protein VC0737 {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CBS-domain pair superfamily: CBS-domain pair family: CBS-domain pair domain: Hypothetical protein VC0737 species: Vibrio cholerae [TaxId: 666]
Probab=99.82 E-value=3e-20 Score=157.76 Aligned_cols=129 Identities=19% Similarity=0.198 Sum_probs=102.2
Q ss_pred CCCcCeEEEeCCCcHHHHHHHHHhcCCCCCEEEEEcCCCcEEEeeccCcccCcchhHHHHHhhcChhhhhhhhccCCCCc
Q 016003 194 IISTDVVAVDYHSPASLALEAISRSLFDQTSVAVVDSDGFLIGEISPSTLGCCDETVAAAITTLSAGDLMAYIDCGGPPE 273 (397)
Q Consensus 194 ~~~~~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~is~~dl~~~~~~~~~~~~~ls~~Dl~~~~~~~~~~~ 273 (397)
+|+++++++++++++.+|+++|.++++ +++||+|++|+++|+ +|.+|++.+...
T Consensus 7 iM~~~~~~v~~~~tl~~a~~~m~~~~~--~~lpVvd~~~~~~Gi-------------------it~~dl~~~~~~----- 60 (139)
T d2o16a3 7 MMTRHPHTLLRTHTLNDAKHLMEALDI--RHVPIVDANKKLLGI-------------------VSQRDLLAAQES----- 60 (139)
T ss_dssp TSEESCCCBCTTSBHHHHHHHHHHHTC--SEEEEECTTCBEEEE-------------------EEHHHHHHHHHH-----
T ss_pred hCcCCCeEECCcCCHHHHHHHHHHcCC--Ceeeeeccccccccc-------------------ccHHHHHHHHHh-----
Confidence 799999999999999999999999999 999999999999999 456676653210
Q ss_pred hhHHHHHHHhhhcchhhhhhhhccccCCCCCCCCCCCCCccchhhhccccCCCccccccchhhhhcCCccEEeCCCCcHH
Q 016003 274 DLVRVVKERLKDKGLEGMLEHFDMSSSLMPYLSTSSSSDEESTATSKLTRSGKHSRSMSYSARMVRRAEAIVCHPTSSLM 353 (397)
Q Consensus 274 ~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~~~~sl~ 353 (397)
.+ ... ... +. .. .+.+...+|.+++++|++++++.
T Consensus 61 --------~~-----~~~---~~~-------------------~~-------~~---~~~~v~~im~~~~~~v~~~~~l~ 95 (139)
T d2o16a3 61 --------SL-----QRS---AQG-------------------DS-------LA---FETPLFEVMHTDVTSVAPQAGLK 95 (139)
T ss_dssp --------HC-----C-----------------------------------------CCCBHHHHSCSCEEEBCTTSBHH
T ss_pred --------hh-----hhh---hcc-------------------cc-------cc---cccchhHhhccccccccccchHH
Confidence 00 000 000 00 00 01123456889999999999999
Q ss_pred HHHHHHHHcCCcEEEEEcCCCcEEEEEehHHHHHHHHHHHh
Q 016003 354 AVMIQAIAHRVTYVWVIEDDCTLTGIVTFSDLLKVFRKHLE 394 (397)
Q Consensus 354 ~v~~~m~~~~i~rl~VVd~~~~lvGvVt~~DIl~~l~~~~~ 394 (397)
+|+.+|.+++++++||+|+ |+++|+||++||++++.+.++
T Consensus 96 ~a~~~m~~~~~~~lpVvd~-~~lvGiit~~Dil~~~~~~~~ 135 (139)
T d2o16a3 96 ESAIYMQKHKIGCLPVVAK-DVLVGIITDSDFVTIAINLLE 135 (139)
T ss_dssp HHHHHHHHTTCSCEEEEET-TEEEEEECHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCceEEEEEEC-CEEEEEEEHHHHHHHHHHHHh
Confidence 9999999999999999996 899999999999999988765
|
| >d2v8qe1 d.37.1.1 (E:182-326) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CBS-domain pair superfamily: CBS-domain pair family: CBS-domain pair domain: 5'-AMP-activated protein kinase subunit gamma-1, AMPKg species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.82 E-value=4.4e-20 Score=157.44 Aligned_cols=136 Identities=20% Similarity=0.283 Sum_probs=104.1
Q ss_pred CccCCccccCCCC-cCeEEEeCCCcHHHHHHHHHhcCCCCCEEEEEcCCCcEEEeeccCcccCcchhHHHHHhhcChhhh
Q 016003 184 IPALSIDSLGIIS-TDVVAVDYHSPASLALEAISRSLFDQTSVAVVDSDGFLIGEISPSTLGCCDETVAAAITTLSAGDL 262 (397)
Q Consensus 184 l~~~ti~~L~~~~-~~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~is~~dl~~~~~~~~~~~~~ls~~Dl 262 (397)
+..++++++.+.+ ++++++++++|+.+|+++|.++++ +++||+|++|+++|+||. +|+
T Consensus 6 f~~~~l~~l~i~~~~~v~~v~~~~tv~eal~~m~~~~~--~~lpVvd~~~~~~Gvit~-------------------~di 64 (145)
T d2v8qe1 6 FMSKSLEELQIGTYANIAMVRTTTPVYVALGIFVQHRV--SALPVVDEKGRVVDIYSK-------------------FDV 64 (145)
T ss_dssp GGGSBHHHHTCSBCSSCCCEETTCBHHHHHHHHHHHCC--SEEEEECTTSBEEEEEEG-------------------GGT
T ss_pred HhhCCHHHHcCCCCCCceEEcCcCcHHHHHHHHHHcCC--CcccccccCCceEEEEEc-------------------chh
Confidence 3467888888765 689999999999999999999999 999999999999999654 455
Q ss_pred hhhhccCCCCchhHHHHHHHhhhcchhhhhhhhccccCCCCCCCCCCCCCccchhhhccccCCCccccccchhhhhcCCc
Q 016003 263 MAYIDCGGPPEDLVRVVKERLKDKGLEGMLEHFDMSSSLMPYLSTSSSSDEESTATSKLTRSGKHSRSMSYSARMVRRAE 342 (397)
Q Consensus 263 ~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (397)
+.++...... .+ ...+. + . ......|..+
T Consensus 65 ~~~l~~~~~~-~~---------~~~v~----------------------------~-----~--------~~~~~~~~~~ 93 (145)
T d2v8qe1 65 INLAAEKTYN-NL---------DVSVT----------------------------K-----A--------LQHRSHYFEG 93 (145)
T ss_dssp GGGGGSSCCC-CC---------SSBHH----------------------------H-----H--------GGGCCSCCCS
T ss_pred hhhhhccccc-ch---------hhhhh----------------------------h-----c--------cchhhhccCC
Confidence 4422110000 00 00000 0 0 0001135678
Q ss_pred cEEeCCCCcHHHHHHHHHHcCCcEEEEEcCCCcEEEEEehHHHHHHHHH
Q 016003 343 AIVCHPTSSLMAVMIQAIAHRVTYVWVIEDDCTLTGIVTFSDLLKVFRK 391 (397)
Q Consensus 343 ~it~~~~~sl~~v~~~m~~~~i~rl~VVd~~~~lvGvVt~~DIl~~l~~ 391 (397)
+++|.+++++.+++++|.++++|++||+|++|+++|+||++||+++|+.
T Consensus 94 ~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~g~l~GiVt~~dii~~lv~ 142 (145)
T d2v8qe1 94 VLKCYLHETLEAIINRLVEAEVHRLVVVDEHDVVKGIVSLSDILQALVL 142 (145)
T ss_dssp CCEECTTSBHHHHHHHHHHHTCSEEEEECTTSBEEEEEEHHHHHHHHHS
T ss_pred CeEECCCCcHHHHHHHHHHcCceEEEEEccCCEEEEEEEHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999975
|
| >d2v8qe2 d.37.1.1 (E:23-181) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CBS-domain pair superfamily: CBS-domain pair family: CBS-domain pair domain: 5'-AMP-activated protein kinase subunit gamma-1, AMPKg species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.81 E-value=4.2e-20 Score=159.70 Aligned_cols=141 Identities=18% Similarity=0.231 Sum_probs=112.5
Q ss_pred cccccchhhhhhcCCCCeEEEeCChhHHHHHHHHhhCCCceEEEEccCCCCCCCCCCCCCCCeEEEEEehhHHHHHHhhc
Q 016003 3 VSLLADEVSDLCLGKPALRALSISAAIADALSALKNSDESFISVWDCNCCSNHRKLGDACECQCVGKVCMVDVICYLCKD 82 (397)
Q Consensus 3 ~~~~~~~v~dl~~~k~~li~v~~~~tv~~Al~~L~~~~I~s~PV~d~~~~~~~~~~~~~~~~~~vGiv~~~Dil~~l~~~ 82 (397)
.||.+.+++|||..+.++++++.++|+.+|+++|.+++++++||++.+ +++++|+++..|++.++...
T Consensus 8 ~~l~~~t~~Dlm~~~~~vv~l~~~~sv~eA~~~l~~~~~~~~pVv~~~------------~~~~vG~is~~Dl~~~~~~~ 75 (159)
T d2v8qe2 8 TFMKSHRCYDLIPTSSKLVVFDTSLQVKKAFFALVTNGVRAAPLWDSK------------KQSFVGMLTITDFINILHRY 75 (159)
T ss_dssp HHHHHSBGGGGSCSEEEEEEEETTSBHHHHHHHHHHHTCSEEEEEETT------------TTEEEEEEEHHHHHHHHHHH
T ss_pred HHhcCCEEEeECCCCCceEEEcCCCcHHHHHHHHHHcCCCceeEEECC------------CCcEEEEEEHHHHHHHHHhc
Confidence 588999999999888899999999999999999999999999999864 36899999999999988641
Q ss_pred -----CCCCCh----hhhhcCChhhhccCCCCCceEEeCCCCCHHHHHHHHh-cCCceEEEeccCcchhhhhhhcccccc
Q 016003 83 -----SNSLSP----SLALKQPVSVLLPQLLPPLVMHVEPSCSLLEAMDLML-GGAQNLVVPIKNRLSIKRKQQQKLSSS 152 (397)
Q Consensus 83 -----~~l~~~----~~~~~~~V~~lm~~~~~~~~~~V~~~~sL~~al~~m~-~g~~r~~V~~~~~~~~~~~~~~~~~~~ 152 (397)
...... .......+..+|. .++++++|+++|.+|++.|. +|+||++|.+.+
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~v~~~~~l~~v~~~m~~~~~~~v~Vvd~~--------------- 136 (159)
T d2v8qe2 76 YKSALVQIYELEEHKIETWREVYLQDSF----KPLVCISPNASLFDAVSSLIRNKIHRLPVIDPE--------------- 136 (159)
T ss_dssp HHHHTTTCCCGGGCBHHHHHHHHSSSSC----CCCCCBCTTSBHHHHHHHHHHHTCSCEEEECTT---------------
T ss_pred cccccchhhhhhhhhcccccceeeeeec----cceEEECCCCcHHHHHHHHHHhCCeEEEEEECC---------------
Confidence 111000 0111123344453 44899999999999999999 799999997532
Q ss_pred cccCCCCceeeeecHHHHHHHHHhccC
Q 016003 153 SLTNHNGREFCWLTQEDIIRFILSSIS 179 (397)
Q Consensus 153 ~~~~~~~~~~~IITq~DIi~~l~~~~~ 179 (397)
.+++.|||||+||++||+.+.+
T Consensus 137 -----~g~~~GivT~~dilk~l~~~~~ 158 (159)
T d2v8qe2 137 -----SGNTLYILTHKRILKFLKLFIT 158 (159)
T ss_dssp -----TCCEEEEECHHHHHHHHHHHSC
T ss_pred -----CCeEEEEEeHHHHHHHHHHHcC
Confidence 2468899999999999987754
|
| >d2ooxe1 d.37.1.1 (E:3-181) Uncharacterized protein C1556.08c {Schizosaccharomyces pombe [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CBS-domain pair superfamily: CBS-domain pair family: CBS-domain pair domain: Uncharacterized protein C1556.08c species: Schizosaccharomyces pombe [TaxId: 4896]
Probab=99.81 E-value=1.1e-20 Score=166.62 Aligned_cols=147 Identities=18% Similarity=0.138 Sum_probs=114.7
Q ss_pred cccccchhhhhhcCCCCeEEEeCChhHHHHHHHHhhCCCceEEEEccCCCCCCCCCCCCCCCeEEEEEehhHHHHHHhhc
Q 016003 3 VSLLADEVSDLCLGKPALRALSISAAIADALSALKNSDESFISVWDCNCCSNHRKLGDACECQCVGKVCMVDVICYLCKD 82 (397)
Q Consensus 3 ~~~~~~~v~dl~~~k~~li~v~~~~tv~~Al~~L~~~~I~s~PV~d~~~~~~~~~~~~~~~~~~vGiv~~~Dil~~l~~~ 82 (397)
.||.+.+++|+|..+.+++++++++|+.+|+++|.+++++++||||++ +++++|++|..||+.++...
T Consensus 15 ~fl~~~~~~dvm~~s~~vv~i~~~~~v~~A~~~m~~~~i~~lpVvd~~------------~~~~vGiis~~Di~~~l~~~ 82 (179)
T d2ooxe1 15 AFIRSRTSYDVLPTSFRLIVFDVTLFVKTSLSLLTLNNIVSAPLWDSE------------ANKFAGLLTMADFVNVIKYY 82 (179)
T ss_dssp HHHHHSBHHHHSCSEEEEEEEETTSBHHHHHHHHHHHTCSCEEEEETT------------TTEEEEEECHHHHHHHHHHH
T ss_pred HHHcCCEeeeeCCCCCcEEEEECcchHHHHHHHHHHcCCCeEEEEeCC------------CCeeEEEEeechHHHHHHhc
Confidence 588999999999877889999999999999999999999999999964 36899999999999987631
Q ss_pred ---CCCCCh-hhhh---------cCChhhhccCCCCCceEEeCCCCCHHHHHHHHh-cCCceEEEeccCcchhhhhhhcc
Q 016003 83 ---SNSLSP-SLAL---------KQPVSVLLPQLLPPLVMHVEPSCSLLEAMDLML-GGAQNLVVPIKNRLSIKRKQQQK 148 (397)
Q Consensus 83 ---~~l~~~-~~~~---------~~~V~~lm~~~~~~~~~~V~~~~sL~~al~~m~-~g~~r~~V~~~~~~~~~~~~~~~ 148 (397)
...... .... ...+..+|. .+++++.++++|.+|++.|. +++||++|+++...
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~i~v~~~~sl~~~~~~m~~~~~~~lpVvd~~g~--------- 149 (179)
T d2ooxe1 83 YQSSSFPEAIAEIDKFRLLGLREVERKIGAIP----PETIYVHPMHSLMDACLAMSKSRARRIPLIDVDGE--------- 149 (179)
T ss_dssp HHHCSCGGGGGGGGGSBHHHHHHHHHHTTCSC----SSCCCBCTTSBHHHHHHHHHHTTCSEEEEEEECTT---------
T ss_pred cccccchhhhhhhhccchhhhcccceeeeecc----cCceEECCCCcHHHHHHHhhhcCceEEEEEecCCC---------
Confidence 111000 0000 112333443 45899999999999999999 89999999875322
Q ss_pred cccccccCCCCceeeeecHHHHHHHHHhccCCC
Q 016003 149 LSSSSLTNHNGREFCWLTQEDIIRFILSSISLF 181 (397)
Q Consensus 149 ~~~~~~~~~~~~~~~IITq~DIi~~l~~~~~~l 181 (397)
+.++.++|||||+||++||+.|....
T Consensus 150 -------~~~~~vvgiiT~~dIlk~l~~~~~~~ 175 (179)
T d2ooxe1 150 -------TGSEMIVSVLTQYRILKFISMNCKET 175 (179)
T ss_dssp -------TCCEEEEEEEEHHHHHHHHHTTCGGG
T ss_pred -------cCCCcEEEEEeHHHHHHHHHHhhhHh
Confidence 12357889999999999999876543
|
| >d1y5ha3 d.37.1.1 (A:2-124) Hypothetical protein Rv2626c {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CBS-domain pair superfamily: CBS-domain pair family: CBS-domain pair domain: Hypothetical protein Rv2626c species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.81 E-value=1.3e-20 Score=156.65 Aligned_cols=121 Identities=21% Similarity=0.263 Sum_probs=97.8
Q ss_pred CccccCCCCcCeEEEeCCCcHHHHHHHHHhcCCCCCEEEEEcCCCcEEEeeccCcccCcchhHHHHHhhcChhhhhhhhc
Q 016003 188 SIDSLGIISTDVVAVDYHSPASLALEAISRSLFDQTSVAVVDSDGFLIGEISPSTLGCCDETVAAAITTLSAGDLMAYID 267 (397)
Q Consensus 188 ti~~L~~~~~~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~is~~dl~~~~~~~~~~~~~ls~~Dl~~~~~ 267 (397)
|+++ +|+++++++.+++++.+|+++|.++++ +++||+|++|+++|+ +|.+|++...-
T Consensus 2 t~~d--iM~~~~~~v~~~~tl~~a~~~m~~~~~--~~~pVvd~~~~~~Gi-------------------it~~Di~~~~~ 58 (123)
T d1y5ha3 2 TARD--IMNAGVTCVGEHETLTAAAQYMREHDI--GALPICGDDDRLHGM-------------------LTDRDIVIKGL 58 (123)
T ss_dssp CHHH--HSEETCCCEETTSBHHHHHHHHHHHTC--SEEEEECGGGBEEEE-------------------EEHHHHHHTTG
T ss_pred CHHH--hcCCCCcEECCcCcHHHHHHHHHHcCC--CceEEEeccchhhhh-------------------hhhhhHhhhhh
Confidence 4455 799999999999999999999999999 999999999999999 55677654210
Q ss_pred cCCCCchhHHHHHHHhhhcchhhhhhhhccccCCCCCCCCCCCCCccchhhhccccCCCccccccchhhhhcCCccEEeC
Q 016003 268 CGGPPEDLVRVVKERLKDKGLEGMLEHFDMSSSLMPYLSTSSSSDEESTATSKLTRSGKHSRSMSYSARMVRRAEAIVCH 347 (397)
Q Consensus 268 ~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~ 347 (397)
. ++.. . . ......+|+.++++|+
T Consensus 59 ~-----------------~~~~------------~--------------~--------------~~~v~~im~~~~~~v~ 81 (123)
T d1y5ha3 59 A-----------------AGLD------------P--------------N--------------TATAGELARDSIYYVD 81 (123)
T ss_dssp G-----------------GTCC------------T--------------T--------------TSBHHHHHTTCCCCEE
T ss_pred h-----------------cCCC------------c--------------c--------------cceEEEEeeccceeee
Confidence 0 0000 0 0 0012246788999999
Q ss_pred CCCcHHHHHHHHHHcCCcEEEEEcCCCcEEEEEehHHHHHHH
Q 016003 348 PTSSLMAVMIQAIAHRVTYVWVIEDDCTLTGIVTFSDLLKVF 389 (397)
Q Consensus 348 ~~~sl~~v~~~m~~~~i~rl~VVd~~~~lvGvVt~~DIl~~l 389 (397)
+++++.++++.|.+++++++||+|+ |+++|+||++||++++
T Consensus 82 ~~~~~~~~~~~m~~~~~~~lpVvd~-~~lvGiit~~Dil~~l 122 (123)
T d1y5ha3 82 ANASIQEMLNVMEEHQVRRVPVISE-HRLVGIVTEADIARHL 122 (123)
T ss_dssp TTCCHHHHHHHHHHHTCSEEEEEET-TEEEEEEEHHHHHHTC
T ss_pred ecchHHHHHHHHHHcCceEEEEEEC-CEEEEEEEHHHHHhhC
Confidence 9999999999999999999999996 7999999999999864
|
| >d2ooxe2 d.37.1.1 (E:182-334) Uncharacterized protein C1556.08c {Schizosaccharomyces pombe [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CBS-domain pair superfamily: CBS-domain pair family: CBS-domain pair domain: Uncharacterized protein C1556.08c species: Schizosaccharomyces pombe [TaxId: 4896]
Probab=99.81 E-value=4.3e-20 Score=159.26 Aligned_cols=133 Identities=18% Similarity=0.323 Sum_probs=100.8
Q ss_pred CccccCCCC-cCeEEEeCCCcHHHHHHHHHhcCCCCCEEEEEcCCCcEEEeeccCcccCcchhHHHHHhhcChhhhhhhh
Q 016003 188 SIDSLGIIS-TDVVAVDYHSPASLALEAISRSLFDQTSVAVVDSDGFLIGEISPSTLGCCDETVAAAITTLSAGDLMAYI 266 (397)
Q Consensus 188 ti~~L~~~~-~~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~is~~dl~~~~~~~~~~~~~ls~~Dl~~~~ 266 (397)
|++++.+.+ ++++++.+++++.+|+++|.++++ +++||+|++|+++|+| +.+|++.++
T Consensus 2 pl~~~~ig~~~~vv~v~~~~~v~~a~~~m~~~~~--~~lpVvd~~~~~vG~i-------------------t~~Dl~~~~ 60 (153)
T d2ooxe2 2 PLNQMTIGTWSNLATASMETKVYDVIKMLAEKNI--SAVPIVNSEGTLLNVY-------------------ESVDVMHLI 60 (153)
T ss_dssp BGGGTCCSBCSSCCCBCTTSBHHHHHHHHHHTTC--SEEEEECGGGBEEEEE-------------------EHHHHHHHH
T ss_pred CHHHcCCCCCCCCeEEeCcCcHHHHHHHHHHcCc--ceEeeecccceEEEEE-------------------Eeeeeeehh
Confidence 466766665 689999999999999999999999 9999999999999995 566665532
Q ss_pred ccCCCCchhHHHHHHHhhhcchhhhhhhhccccCCCCCCCCCCCCCccchhhhccccCCCccccccchhhhhcCCccEEe
Q 016003 267 DCGGPPEDLVRVVKERLKDKGLEGMLEHFDMSSSLMPYLSTSSSSDEESTATSKLTRSGKHSRSMSYSARMVRRAEAIVC 346 (397)
Q Consensus 267 ~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~ 346 (397)
..... ..+ ...+..+ +. . ...+..++++|
T Consensus 61 ~~~~~-~~~---------~~~v~~~---~~---------------------------~-----------~~~~~~~~~~v 89 (153)
T d2ooxe2 61 QDGDY-SNL---------DLSVGEA---LL---------------------------K-----------RPANFDGVHTC 89 (153)
T ss_dssp GGGCG-GGG---------GSBHHHH---HH---------------------------T-----------SCCCSSCCCEE
T ss_pred ccccc-ccc---------ccchhhh---ee---------------------------e-----------eecccCCCeEE
Confidence 11000 000 0000000 00 0 01245688999
Q ss_pred CCCCcHHHHHHHHHHcCCcEEEEEcCCCcEEEEEehHHHHHHHHHH
Q 016003 347 HPTSSLMAVMIQAIAHRVTYVWVIEDDCTLTGIVTFSDLLKVFRKH 392 (397)
Q Consensus 347 ~~~~sl~~v~~~m~~~~i~rl~VVd~~~~lvGvVt~~DIl~~l~~~ 392 (397)
.+++++.++++.|.++++|++||||++|+++||||++||++++...
T Consensus 90 ~~~~~l~~~~~~m~~~~~~~l~Vvd~~~~lvGivT~~Dil~~~~~~ 135 (153)
T d2ooxe2 90 RATDRLDGIFDAIKHSRVHRLFVVDENLKLEGILSLADILNYIIYD 135 (153)
T ss_dssp CTTCBHHHHHHHHHHSCCSEEEEECTTCBEEEEEEHHHHHHHHHSC
T ss_pred CCCCcHHHHHHhhhhceeeEEEEEcCCCEEEEEEEHHHHHHHHHcC
Confidence 9999999999999999999999999999999999999999998753
|
| >d2yzqa2 d.37.1.1 (A:1-122) Uncharacterized protein PH1780 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CBS-domain pair superfamily: CBS-domain pair family: CBS-domain pair domain: Uncharacterized protein PH1780 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=99.81 E-value=1.6e-20 Score=156.11 Aligned_cols=116 Identities=20% Similarity=0.294 Sum_probs=85.6
Q ss_pred CCCcCeEEEeCCCcHHHHHHHHHhcCCCCCEEEEEcCCCcEEEeeccCcccCcchhHHHHHhhcChhhhhhhhccCCCCc
Q 016003 194 IISTDVVAVDYHSPASLALEAISRSLFDQTSVAVVDSDGFLIGEISPSTLGCCDETVAAAITTLSAGDLMAYIDCGGPPE 273 (397)
Q Consensus 194 ~~~~~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~is~~dl~~~~~~~~~~~~~ls~~Dl~~~~~~~~~~~ 273 (397)
+|+++++++++++++.+|+++|.++++ +++||+|++|+++|+||..||.+....
T Consensus 6 iM~~~~v~v~~~~~v~~a~~~m~~~~~--~~~~Vvd~~~~~~G~it~~dl~~~~~~------------------------ 59 (122)
T d2yzqa2 6 IMTQNPVTITLPATRNYALELFKKYKV--RSFPVVNKEGKLVGIISVKRILVNPDE------------------------ 59 (122)
T ss_dssp HSEESCCCEESSCC------------C--CEEEEECTTCCEEEEEESSCC------------------------------
T ss_pred ccCCCCEEECCcCcHHHHHHHHHHcCC--cEEEEEeccccchhhhhcchhhhhhcc------------------------
Confidence 689999999999999999999999999 999999999999999775555441000
Q ss_pred hhHHHHHHHhhhcchhhhhhhhccccCCCCCCCCCCCCCccchhhhccccCCCccccccchhhhhcCCccEEeCCCCcHH
Q 016003 274 DLVRVVKERLKDKGLEGMLEHFDMSSSLMPYLSTSSSSDEESTATSKLTRSGKHSRSMSYSARMVRRAEAIVCHPTSSLM 353 (397)
Q Consensus 274 ~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~~~~sl~ 353 (397)
. . ....|..++++|++++++.
T Consensus 60 ----------------------~-----------------------------~--------~~~~~~~~~~~v~~~~~l~ 80 (122)
T d2yzqa2 60 ----------------------E-----------------------------Q--------LAMLVKRDVPVVKENDTLK 80 (122)
T ss_dssp ---------------------------------------------------------------CCCBSCCCEEETTSBHH
T ss_pred ----------------------c-----------------------------c--------hhhccccceeecchhhHHH
Confidence 0 0 0123677889999999999
Q ss_pred HHHHHHHHcCCcEEEEEcCCCcEEEEEehHHHHHHHHHHHh
Q 016003 354 AVMIQAIAHRVTYVWVIEDDCTLTGIVTFSDLLKVFRKHLE 394 (397)
Q Consensus 354 ~v~~~m~~~~i~rl~VVd~~~~lvGvVt~~DIl~~l~~~~~ 394 (397)
+++++|.+++++++||||++|+++|+||++||++++.++.+
T Consensus 81 ~~~~~~~~~~~~~lpVvd~~~~liGiit~~dil~~~~~~~e 121 (122)
T d2yzqa2 81 KAAKLMLEYDYRRVVVVDSKGKPVGILTVGDIIRRYFAKSE 121 (122)
T ss_dssp HHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHTTTTCS
T ss_pred HHHHHHHHcCcEEEEEEeCCCEEEEEEEHHHHHHHHHhHhc
Confidence 99999999999999999999999999999999999877654
|
| >d2ouxa2 d.37.1.1 (A:136-262) Magnesium transporter MgtE {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CBS-domain pair superfamily: CBS-domain pair family: CBS-domain pair domain: Magnesium transporter MgtE species: Enterococcus faecalis [TaxId: 1351]
Probab=99.80 E-value=1.1e-19 Score=152.26 Aligned_cols=117 Identities=23% Similarity=0.233 Sum_probs=99.2
Q ss_pred CCCcCeEEEeCCCcHHHHHHHHHhcC-----CCCCEEEEEcCCCcEEEeeccCcccCcchhHHHHHhhcChhhhhhhhcc
Q 016003 194 IISTDVVAVDYHSPASLALEAISRSL-----FDQTSVAVVDSDGFLIGEISPSTLGCCDETVAAAITTLSAGDLMAYIDC 268 (397)
Q Consensus 194 ~~~~~v~tv~~~~~~~~a~~~m~~~~-----i~~s~vpVVd~~g~lvG~is~~dl~~~~~~~~~~~~~ls~~Dl~~~~~~ 268 (397)
+|+++++++++++++.+|++.|++++ + +.+||||++|+++|.++ .+|+...-
T Consensus 6 iM~~d~i~v~~~~tv~ea~~~m~~~~~~~~~~--~~~~Vvd~~~~l~G~v~-------------------~~~l~~~~-- 62 (127)
T d2ouxa2 6 IMTTEFVSIVANQTVRSAMYVLKNQADMAETI--YYVYVVDQENHLVGVIS-------------------LRDLIVND-- 62 (127)
T ss_dssp HCBSCCCEECSSSBHHHHHHHHHHHCSSCSCC--SEEEEECTTCBEEEEEE-------------------HHHHTTSC--
T ss_pred hCCCCcEEECCCCcHHHHHHHhHhhcccccce--eeeEEEecCCeEEEEEE-------------------eecccccc--
Confidence 79999999999999999999998874 5 89999999999999843 44443200
Q ss_pred CCCCchhHHHHHHHhhhcchhhhhhhhccccCCCCCCCCCCCCCccchhhhccccCCCccccccchhhhhcCCccEEeCC
Q 016003 269 GGPPEDLVRVVKERLKDKGLEGMLEHFDMSSSLMPYLSTSSSSDEESTATSKLTRSGKHSRSMSYSARMVRRAEAIVCHP 348 (397)
Q Consensus 269 ~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~~ 348 (397)
.. .....+|++++++|+|
T Consensus 63 ------------------------------------------------------~~--------~~v~~im~~~~~~v~~ 80 (127)
T d2ouxa2 63 ------------------------------------------------------DD--------TLIADILNERVISVHV 80 (127)
T ss_dssp ------------------------------------------------------TT--------SBHHHHSBSCCCCEET
T ss_pred ------------------------------------------------------cc--------EEhhhhccCCCccCCC
Confidence 00 0123468899999999
Q ss_pred CCcHHHHHHHHHHcCCcEEEEEcCCCcEEEEEehHHHHHHHHHHHhh
Q 016003 349 TSSLMAVMIQAIAHRVTYVWVIEDDCTLTGIVTFSDLLKVFRKHLET 395 (397)
Q Consensus 349 ~~sl~~v~~~m~~~~i~rl~VVd~~~~lvGvVt~~DIl~~l~~~~~~ 395 (397)
++++.+|++.|.+++++++||||++|+|+|+||..||++++.++.+|
T Consensus 81 ~~~l~~a~~~m~~~~~~~lPVVD~~g~lvGiIt~~Dil~~i~eea~s 127 (127)
T d2ouxa2 81 GDDQEDVAQTIRDYDFLAVPVTDYDDHLLGIVTVDDIIDVIDDEAAS 127 (127)
T ss_dssp TSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHhCCEEEEEEeCCCEEEEEEEHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999887765
|
| >d2yzia1 d.37.1.1 (A:4-135) Uncharacterized protein PH0107 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CBS-domain pair superfamily: CBS-domain pair family: CBS-domain pair domain: Uncharacterized protein PH0107 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=99.80 E-value=1.5e-19 Score=152.07 Aligned_cols=128 Identities=22% Similarity=0.352 Sum_probs=105.2
Q ss_pred cCCccccCCCCcCeEEEeCCCcHHHHHHHHHhcCCCCCEEEEEcCCCcEEEeeccCcccCcchhHHHHHhhcChhhhhhh
Q 016003 186 ALSIDSLGIISTDVVAVDYHSPASLALEAISRSLFDQTSVAVVDSDGFLIGEISPSTLGCCDETVAAAITTLSAGDLMAY 265 (397)
Q Consensus 186 ~~ti~~L~~~~~~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~is~~dl~~~~~~~~~~~~~ls~~Dl~~~ 265 (397)
..+|++ +|+++++++++++++.+|++.|.++++ +++||||++|+++|+ +|.+|++..
T Consensus 4 ~~pV~~--im~~~~~~v~~~~t~~~a~~~m~~~~~--~~~~Vvd~~~~~~Gi-------------------it~~di~~~ 60 (132)
T d2yzia1 4 KAPIKV--YMTKKLLGVKPSTSVQEASRLMMEFDV--GSLVVINDDGNVVGF-------------------FTKSDIIRR 60 (132)
T ss_dssp TSBGGG--TCBCCCCEECTTSBHHHHHHHHHHHTC--SEEEEECTTSCEEEE-------------------EEHHHHHHH
T ss_pred CCcHHH--HcCCCCeEECCcCcHHHHHHHHHHcCC--cEEEEecccceeeee-------------------eeHHHHHHH
Confidence 457776 799999999999999999999999999 999999999999999 556777652
Q ss_pred hccCCCCchhHHHHHHHhhhcchhhhhhhhccccCCCCCCCCCCCCCccchhhhccccCCCccccccchhhhhcCCccEE
Q 016003 266 IDCGGPPEDLVRVVKERLKDKGLEGMLEHFDMSSSLMPYLSTSSSSDEESTATSKLTRSGKHSRSMSYSARMVRRAEAIV 345 (397)
Q Consensus 266 ~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it 345 (397)
+... + .+ . ..+...+|.+++++
T Consensus 61 ~~~~-----------------~--------------~~-------------~--------------~~~v~~im~~~~~~ 82 (132)
T d2yzia1 61 VIVP-----------------G--------------LP-------------Y--------------DIPVERIMTRNLIT 82 (132)
T ss_dssp TTTT-----------------C--------------CC-------------T--------------TSBGGGTCBCSCCE
T ss_pred Hhhc-----------------c--------------Cc-------------c--------------ceeEeecccccccc
Confidence 2100 0 00 0 00122457889999
Q ss_pred eCCCCcHHHHHHHHHHcCCcEEEEEcCCCcEEEEEehHHHHHHHHHHHhh
Q 016003 346 CHPTSSLMAVMIQAIAHRVTYVWVIEDDCTLTGIVTFSDLLKVFRKHLET 395 (397)
Q Consensus 346 ~~~~~sl~~v~~~m~~~~i~rl~VVd~~~~lvGvVt~~DIl~~l~~~~~~ 395 (397)
|++++++.++++.|.+++++++||+++ |+++|+||.+||++++.+++|+
T Consensus 83 v~~~~~~~~~~~~m~~~~~~~l~V~~~-~~~vGivt~~Dil~a~~~~le~ 131 (132)
T d2yzia1 83 ANVNTPLGEVLRKMAEHRIKHILIEEE-GKIVGIFTLSDLLEASRRRLET 131 (132)
T ss_dssp EETTSBHHHHHHHHHHHTCSEEEEEET-TEEEEEEEHHHHHHHHHCCSCC
T ss_pred cCcchHHHHHHHHHHHcCCCEEEEEEC-CEEEEEEEHHHHHHHHHHHHcc
Confidence 999999999999999999999998765 8999999999999999888765
|
| >d1pvma4 d.37.1.1 (A:1-142) Hypothetical protein Ta0289 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CBS-domain pair superfamily: CBS-domain pair family: CBS-domain pair domain: Hypothetical protein Ta0289 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.79 E-value=1.6e-19 Score=153.89 Aligned_cols=125 Identities=17% Similarity=0.247 Sum_probs=101.9
Q ss_pred CccccCCCCcCeEEEeCCCcHHHHHHHHHhcCCCCCEEEEEcCCCcEEEeeccCcccCcchhHHHHHhhcChhhhhhhhc
Q 016003 188 SIDSLGIISTDVVAVDYHSPASLALEAISRSLFDQTSVAVVDSDGFLIGEISPSTLGCCDETVAAAITTLSAGDLMAYID 267 (397)
Q Consensus 188 ti~~L~~~~~~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~is~~dl~~~~~~~~~~~~~ls~~Dl~~~~~ 267 (397)
++++ +|+++++++++++++.+|++.|.++++ +.+||+|++|+++|+ +|.+|+...+.
T Consensus 4 ~v~d--im~~~~~~v~~~~tl~~a~~~m~~~~~--~~~~V~d~~~~~~Gi-------------------it~~di~~~~~ 60 (142)
T d1pvma4 4 RVEK--IMNSNFKTVNWNTTVFDAVKIMNENHL--YGLVVKDDNGNDVGL-------------------LSERSIIKRFI 60 (142)
T ss_dssp BGGG--TSBTTCCEEETTCBHHHHHHHHHHHTC--CEEEEECTTSCEEEE-------------------EEHHHHHHHTG
T ss_pred EHHH--hCCCCCcEECCcCcHHHHHHHHHHCCC--ceEeeeccCCcccce-------------------EEeechhhhhh
Confidence 3455 899999999999999999999999999 999999999999999 55677654211
Q ss_pred cCCCCchhHHHHHHHhhhcchhhhhhhhccccCCCCCCCCCCCCCccchhhhccccCCCccccccchhhhhcCCccEEeC
Q 016003 268 CGGPPEDLVRVVKERLKDKGLEGMLEHFDMSSSLMPYLSTSSSSDEESTATSKLTRSGKHSRSMSYSARMVRRAEAIVCH 347 (397)
Q Consensus 268 ~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~ 347 (397)
.. +.. . . +.....+|+.++++|+
T Consensus 61 ~~-----------------~~~------~--------------------~--------------~~~v~~im~~~~~~v~ 83 (142)
T d1pvma4 61 PR-----------------NKK------P--------------------D--------------EVPIRLVMRKPIPKVK 83 (142)
T ss_dssp GG-----------------CCC------G--------------------G--------------GSBGGGTSBSSCCEEE
T ss_pred hh-----------------ccc------c--------------------c--------------cccccccccccccccc
Confidence 00 000 0 0 0011245788999999
Q ss_pred CCCcHHHHHHHHHHcCCcEEEEEcCCCcEEEEEehHHHHHHHHHH
Q 016003 348 PTSSLMAVMIQAIAHRVTYVWVIEDDCTLTGIVTFSDLLKVFRKH 392 (397)
Q Consensus 348 ~~~sl~~v~~~m~~~~i~rl~VVd~~~~lvGvVt~~DIl~~l~~~ 392 (397)
+++++.+++++|.+++++++||||++|+++|+||..||++++.+.
T Consensus 84 ~~~~l~~~~~~m~~~~~~~lpVvd~~g~l~Giit~~Dil~~l~~~ 128 (142)
T d1pvma4 84 SDYDVKDVAAYLSENGLERCAVVDDPGRVVGIVTLTDLSRYLSRA 128 (142)
T ss_dssp TTCBHHHHHHHHHHHTCSEEEEECTTCCEEEEEEHHHHTTTSCHH
T ss_pred chhhHHHHHHHHHHcCCcEEEEEecCCEEEEEEEHHHHHHHHhhh
Confidence 999999999999999999999999999999999999999988654
|
| >d1zfja4 d.37.1.1 (A:95-220) Type II inosine monophosphate dehydrogenase CBS domains {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CBS-domain pair superfamily: CBS-domain pair family: CBS-domain pair domain: Type II inosine monophosphate dehydrogenase CBS domains species: Streptococcus pyogenes [TaxId: 1314]
Probab=99.79 E-value=2.4e-19 Score=149.69 Aligned_cols=113 Identities=18% Similarity=0.244 Sum_probs=93.2
Q ss_pred CCcCeEEEeCCCcHHHHHHHHHhcCCCCCEEEEEcC--CCcEEEeeccCcccCcchhHHHHHhhcChhhhhhhhccCCCC
Q 016003 195 ISTDVVAVDYHSPASLALEAISRSLFDQTSVAVVDS--DGFLIGEISPSTLGCCDETVAAAITTLSAGDLMAYIDCGGPP 272 (397)
Q Consensus 195 ~~~~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~--~g~lvG~is~~dl~~~~~~~~~~~~~ls~~Dl~~~~~~~~~~ 272 (397)
|.++++++++++++.+|+++|.++++ +++||||+ +|+++|+ +|.+|++......
T Consensus 3 mi~dpvtv~~~~tv~~a~~~m~~~~~--~~~pVvD~~~~~~lvGi-------------------vt~~Di~~~~~~~--- 58 (126)
T d1zfja4 3 VIIDPFFLTPEHKVSEAEELMQRYRI--SGVPIVETLANRKLVGI-------------------ITNRDMRFISDYN--- 58 (126)
T ss_dssp TSSSCCCBCSSSBHHHHHHHHHHTTC--SEEEEESCTTTCBEEEE-------------------EEHHHHHHCSCSS---
T ss_pred CEeCceEECCCCCHHHHHHHHHHhCC--CcEEEEeeccCCeEEEE-------------------eEHHHHHHhhccC---
Confidence 44677899999999999999999999 99999997 6799999 5566765421100
Q ss_pred chhHHHHHHHhhhcchhhhhhhhccccCCCCCCCCCCCCCccchhhhccccCCCccccccchhhhhcCCccEEeCCCCcH
Q 016003 273 EDLVRVVKERLKDKGLEGMLEHFDMSSSLMPYLSTSSSSDEESTATSKLTRSGKHSRSMSYSARMVRRAEAIVCHPTSSL 352 (397)
Q Consensus 273 ~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~~~~sl 352 (397)
. .. ....+..+++++++++++
T Consensus 59 -----------------------------~-----------------------~~-------~~~~~~~~~~~~~~~~~l 79 (126)
T d1zfja4 59 -----------------------------A-----------------------PI-------SEHMTSEHLVTAAVGTDL 79 (126)
T ss_dssp -----------------------------S-----------------------BT-------TTSCCCSCCCCEETTCCH
T ss_pred -----------------------------C-----------------------ce-------eeeeeccceeecCCCCCH
Confidence 0 00 001256788999999999
Q ss_pred HHHHHHHHHcCCcEEEEEcCCCcEEEEEehHHHHHHHH
Q 016003 353 MAVMIQAIAHRVTYVWVIEDDCTLTGIVTFSDLLKVFR 390 (397)
Q Consensus 353 ~~v~~~m~~~~i~rl~VVd~~~~lvGvVt~~DIl~~l~ 390 (397)
.+|+++|.+++++++||||++|+++|+||++||++++.
T Consensus 80 ~~a~~~m~~~~~~~lpVVd~~g~lvGiiT~~Dil~~~~ 117 (126)
T d1zfja4 80 ETAERILHEHRIEKLPLVDNSGRLSGLITIKDIEKVIE 117 (126)
T ss_dssp HHHHHHHHHTTCSEEEEECTTSBEEEEEEHHHHHHHHH
T ss_pred HHHHHHHHhcCCcEEEEEcCCCeEEEEEEHHHHHHHhh
Confidence 99999999999999999999999999999999999874
|
| >d2yvxa2 d.37.1.1 (A:132-275) Magnesium transporter MgtE {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CBS-domain pair superfamily: CBS-domain pair family: CBS-domain pair domain: Magnesium transporter MgtE species: Thermus thermophilus [TaxId: 274]
Probab=99.79 E-value=1.4e-19 Score=154.79 Aligned_cols=116 Identities=22% Similarity=0.268 Sum_probs=99.2
Q ss_pred CCCcCeEEEeCCCcHHHHHHHHHhcC-----CCCCEEEEEcCCCcEEEeeccCcccCcchhHHHHHhhcChhhhhhhhcc
Q 016003 194 IISTDVVAVDYHSPASLALEAISRSL-----FDQTSVAVVDSDGFLIGEISPSTLGCCDETVAAAITTLSAGDLMAYIDC 268 (397)
Q Consensus 194 ~~~~~v~tv~~~~~~~~a~~~m~~~~-----i~~s~vpVVd~~g~lvG~is~~dl~~~~~~~~~~~~~ls~~Dl~~~~~~ 268 (397)
+|+++++++++++++.+|++.|++++ + +.+||||++|+++|+ ++.+|++....
T Consensus 6 iM~~~~itv~~~~tv~ea~~~m~~~~~~~~~~--~~~~Vvd~~~~l~G~-------------------v~~~dl~~~~~- 63 (144)
T d2yvxa2 6 LMTPEYVAVREGMTVEEVLRFLRRAAPDAETI--YYIYVVDEKGRLKGV-------------------LSLRDLIVADP- 63 (144)
T ss_dssp GCBSCCCEECSSCBHHHHHHHSSSSCTTSSCS--SBCEEBCTTCBBCCB-------------------CBHHHHTTSCT-
T ss_pred ccCCCCEEECCCCcHHHHHHHHHHhcccccce--eeeEEecCCCCEecc-------------------cchhhhhhccc-
Confidence 89999999999999999999998774 5 899999999999998 55666654100
Q ss_pred CCCCchhHHHHHHHhhhcchhhhhhhhccccCCCCCCCCCCCCCccchhhhccccCCCccccccchhhhhcCCccEEeCC
Q 016003 269 GGPPEDLVRVVKERLKDKGLEGMLEHFDMSSSLMPYLSTSSSSDEESTATSKLTRSGKHSRSMSYSARMVRRAEAIVCHP 348 (397)
Q Consensus 269 ~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~~ 348 (397)
... ..++|++++++++|
T Consensus 64 -------------------------------------------------------~~~--------v~~im~~~~~~v~~ 80 (144)
T d2yvxa2 64 -------------------------------------------------------RTR--------VAEIMNPKVVYVRT 80 (144)
T ss_dssp -------------------------------------------------------TCB--------STTTSBSSCCCEES
T ss_pred -------------------------------------------------------ccc--------hHHhcccCCccCCC
Confidence 000 01357889999999
Q ss_pred CCcHHHHHHHHHHcCCcEEEEEcCCCcEEEEEehHHHHHHHHHHHh
Q 016003 349 TSSLMAVMIQAIAHRVTYVWVIEDDCTLTGIVTFSDLLKVFRKHLE 394 (397)
Q Consensus 349 ~~sl~~v~~~m~~~~i~rl~VVd~~~~lvGvVt~~DIl~~l~~~~~ 394 (397)
++++.+|++.|.+++++++||||++|+|+|+||..||++++.++.+
T Consensus 81 ~~~~~~a~~~m~~~~~~~lPVVd~~g~lvGiIt~~Dil~~l~~e~~ 126 (144)
T d2yvxa2 81 DTDQEEVARLMADYDFTVLPVVDEEGRLVGIVTVDDVLDVLEAEAT 126 (144)
T ss_dssp SCCHHHHHHHHHHSCCSEEEEECSSCBEEEEEEHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHcCCCEEEEEeECCEEEEEEEHHHHHHHHHHHhH
Confidence 9999999999999999999999999999999999999999987754
|
| >d2ef7a1 d.37.1.1 (A:1-127) Uncharacterized protein ST2348 {Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CBS-domain pair superfamily: CBS-domain pair family: CBS-domain pair domain: Uncharacterized protein ST2348 species: Sulfolobus tokodaii [TaxId: 111955]
Probab=99.79 E-value=5.4e-19 Score=147.57 Aligned_cols=123 Identities=18% Similarity=0.249 Sum_probs=101.1
Q ss_pred cCCccccCCCCcCeEEEeCCCcHHHHHHHHHhcCCCCCEEEEEcCCCcEEEeeccCcccCcchhHHHHHhhcChhhhhhh
Q 016003 186 ALSIDSLGIISTDVVAVDYHSPASLALEAISRSLFDQTSVAVVDSDGFLIGEISPSTLGCCDETVAAAITTLSAGDLMAY 265 (397)
Q Consensus 186 ~~ti~~L~~~~~~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~is~~dl~~~~~~~~~~~~~ls~~Dl~~~ 265 (397)
..++++ +|+++++++.+++++.+|+++|.++++ +++||+|+ |+++|+ +|.+|++..
T Consensus 3 ~~~V~d--~m~~~~v~v~~~~tl~~a~~~m~~~~~--~~~pV~d~-~~~~Gi-------------------vt~~dl~~~ 58 (127)
T d2ef7a1 3 EEIVKE--YMKTQVISVTKDAKLNDIAKVMTEKNI--GSVIVVDG-NKPVGI-------------------ITERDIVKA 58 (127)
T ss_dssp CCBGGG--TSBCSCCEEETTCBHHHHHHHHHHHTC--SEEEEEET-TEEEEE-------------------EEHHHHHHH
T ss_pred ccCHHH--hCCCCCeEECCcCcHHHHHHHHHHcCC--ceEEeecc-cchhhh-------------------cchhHHHHH
Confidence 345665 899999999999999999999999999 99999985 799999 556777653
Q ss_pred hccCCCCchhHHHHHHHhhhcchhhhhhhhccccCCCCCCCCCCCCCccchhhhccccCCCccccccchhhhhcCCccEE
Q 016003 266 IDCGGPPEDLVRVVKERLKDKGLEGMLEHFDMSSSLMPYLSTSSSSDEESTATSKLTRSGKHSRSMSYSARMVRRAEAIV 345 (397)
Q Consensus 266 ~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it 345 (397)
+... .+. . .....+|.+++++
T Consensus 59 ~~~~--------------------------------~~~-------------------~--------~~v~~~~~~~~~~ 79 (127)
T d2ef7a1 59 IGKG--------------------------------KSL-------------------E--------TKAEEFMTASLIT 79 (127)
T ss_dssp HHTT--------------------------------CCT-------------------T--------CBGGGTSEECCCC
T ss_pred HHhh--------------------------------ccc-------------------c--------chhhhhhhhhccc
Confidence 2110 000 0 0012346789999
Q ss_pred eCCCCcHHHHHHHHHHcCCcEEEEEcCCCcEEEEEehHHHHHHHHH
Q 016003 346 CHPTSSLMAVMIQAIAHRVTYVWVIEDDCTLTGIVTFSDLLKVFRK 391 (397)
Q Consensus 346 ~~~~~sl~~v~~~m~~~~i~rl~VVd~~~~lvGvVt~~DIl~~l~~ 391 (397)
|++++++.++++.|.+++++++||+|++|+++|+||+.||++++.+
T Consensus 80 v~~~~~l~~~~~~m~~~~~~~l~Vvd~~~~lvGiit~~Dll~~i~~ 125 (127)
T d2ef7a1 80 IREDSPITGALALMRQFNIRHLPVVDDKGNLKGIISIRDITRAIDD 125 (127)
T ss_dssp EETTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHHH
T ss_pred cccccchhHHHHHHHHcCceEEEEEeCCCeEEEEEEHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999975
|
| >d3ddja1 d.37.1.1 (A:136-276) Uncharacterized protein SSO3205 {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CBS-domain pair superfamily: CBS-domain pair family: CBS-domain pair domain: Uncharacterized protein SSO3205 species: Sulfolobus solfataricus [TaxId: 2287]
Probab=99.78 E-value=2.3e-19 Score=151.91 Aligned_cols=132 Identities=18% Similarity=0.250 Sum_probs=104.8
Q ss_pred CccccCCCCcCeEEEeCCCcHHHHHHHHHhcCCCCCEEEEEcCCCcEEEeeccCcccCcchhHHHHHhhcChhhhhhhhc
Q 016003 188 SIDSLGIISTDVVAVDYHSPASLALEAISRSLFDQTSVAVVDSDGFLIGEISPSTLGCCDETVAAAITTLSAGDLMAYID 267 (397)
Q Consensus 188 ti~~L~~~~~~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~is~~dl~~~~~~~~~~~~~ls~~Dl~~~~~ 267 (397)
||++ +|+++++++++++|+.+|+++|.++++ +++||+|++++++|+| +.+|++.++.
T Consensus 3 ~V~~--iMt~~v~~v~~~~tl~~a~~~m~~~~~--~~ipVv~~~~~~~g~i-------------------~~~di~~~~~ 59 (141)
T d3ddja1 3 PVKV--FMSTKVQTIYKEVRLDQAVKLMLRRGF--RRLPVIDDDNKVVGIV-------------------TVVNAIKQLA 59 (141)
T ss_dssp BHHH--HSBCSCCCEETTSBHHHHHHHHHHHTC--SEEEEECTTSCEEEEE-------------------EHHHHHHHHH
T ss_pred eeHH--hCcCCCeEEcCcCcHHHHHHHHHHcCC--CeeecccccCcccccc-------------------ccccchhhhh
Confidence 4555 799999999999999999999999999 9999999999999994 4666655321
Q ss_pred cCCCCchhHHHHHHHhhhcchhhhhhhhccccCCCCCCCCCCCCCccchhhhccccCCCccccccchhhhhcCCccEEeC
Q 016003 268 CGGPPEDLVRVVKERLKDKGLEGMLEHFDMSSSLMPYLSTSSSSDEESTATSKLTRSGKHSRSMSYSARMVRRAEAIVCH 347 (397)
Q Consensus 268 ~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~ 347 (397)
. .. .. .. . ... . ......+|+.+++++.
T Consensus 60 ~-------------~~-----~~----~~-----~--------------~~~---~--------~~~v~~im~~~~~~v~ 87 (141)
T d3ddja1 60 K-------------AV-----DK----LD-----P--------------DYF---Y--------GKVVKDVMVTNLVTID 87 (141)
T ss_dssp H-------------HH-----HH----TC-----T--------------HHH---H--------TCBHHHHSBCCCCBCC
T ss_pred c-------------cc-----cc----cc-----c--------------ccc---c--------CCCHHHHhCccccccc
Confidence 0 00 00 00 0 000 0 0112346888999999
Q ss_pred CCCcHHHHHHHHHHcCCcEEEEEcCCCcEEEEEehHHHHHHHHHHHh
Q 016003 348 PTSSLMAVMIQAIAHRVTYVWVIEDDCTLTGIVTFSDLLKVFRKHLE 394 (397)
Q Consensus 348 ~~~sl~~v~~~m~~~~i~rl~VVd~~~~lvGvVt~~DIl~~l~~~~~ 394 (397)
+++++.+++.+|.+++++++||||++|+++|+||++||++++.+.+.
T Consensus 88 ~~~~~~~~~~~m~~~~~~~l~Vvd~~~~~iGiIt~~Dil~~l~~~~~ 134 (141)
T d3ddja1 88 ELASVNRAAAEMIVKRIGSLLILNKDNTIRGIITERDLLIALHHILV 134 (141)
T ss_dssp TTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHHHHHH
T ss_pred ccchhhHHHHHHHHcCCCEEEEEccCCEEEEEEEHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999988653
|
| >d2rc3a1 d.37.1.1 (A:23-149) Uncharacterized protein NE2398 {Nitrosomonas europaea [TaxId: 915]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CBS-domain pair superfamily: CBS-domain pair family: CBS-domain pair domain: Uncharacterized protein NE2398 species: Nitrosomonas europaea [TaxId: 915]
Probab=99.78 E-value=4.2e-19 Score=148.37 Aligned_cols=114 Identities=17% Similarity=0.171 Sum_probs=92.2
Q ss_pred cCeEEEeCCCcHHHHHHHHHhcCCCCCEEEEEcCCCcEEEeeccCcccCcchhHHHHHhhcChhhhhhhhccCCCCchhH
Q 016003 197 TDVVAVDYHSPASLALEAISRSLFDQTSVAVVDSDGFLIGEISPSTLGCCDETVAAAITTLSAGDLMAYIDCGGPPEDLV 276 (397)
Q Consensus 197 ~~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~is~~dl~~~~~~~~~~~~~ls~~Dl~~~~~~~~~~~~l~ 276 (397)
++++++.+++++.+|+++|.++++ +++||+| +|+++|+ +|.+|++..+-..
T Consensus 13 ~~v~~i~~~~tl~~a~~~m~~~~~--~~vpV~~-~~~~vGi-------------------it~~Di~~~~~~~------- 63 (127)
T d2rc3a1 13 HTVVAIGPDDSVFNAMQKMAADNI--GALLVMK-DEKLVGI-------------------LTERDFSRKSYLL------- 63 (127)
T ss_dssp CCCCEECTTSBHHHHHHHHHHHTC--SEEEEEE-TTEEEEE-------------------EEHHHHHHHGGGS-------
T ss_pred CccEEECCcCcHHHHHHHHHHcCC--CEEEEEE-CCeEEEE-------------------EEccchhhhhhhh-------
Confidence 479999999999999999999999 9999998 5899999 5567765421000
Q ss_pred HHHHHHhhhcchhhhhhhhccccCCCCCCCCCCCCCccchhhhccccCCCccccccchhhhhcCCccEEeCCCCcHHHHH
Q 016003 277 RVVKERLKDKGLEGMLEHFDMSSSLMPYLSTSSSSDEESTATSKLTRSGKHSRSMSYSARMVRRAEAIVCHPTSSLMAVM 356 (397)
Q Consensus 277 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~~~~sl~~v~ 356 (397)
+.. . . ......+|+.++++|++++++.+++
T Consensus 64 ----------~~~---------------------------~-----~--------~~~v~~im~~~~~~v~~~~~l~~a~ 93 (127)
T d2rc3a1 64 ----------DKP---------------------------V-----K--------DTQVKEIMTRQVAYVDLNNTNEDCM 93 (127)
T ss_dssp ----------SSC---------------------------G-----G--------GSBGGGTSBCSCCCBCTTCBHHHHH
T ss_pred ----------ccc---------------------------c-----c--------ceeEeeeccceeEEeccCccHHHHH
Confidence 000 0 0 0112245788999999999999999
Q ss_pred HHHHHcCCcEEEEEcCCCcEEEEEehHHHHHHHH
Q 016003 357 IQAIAHRVTYVWVIEDDCTLTGIVTFSDLLKVFR 390 (397)
Q Consensus 357 ~~m~~~~i~rl~VVd~~~~lvGvVt~~DIl~~l~ 390 (397)
++|.+++++++||+|+ |+++|+||.+||++++.
T Consensus 94 ~~m~~~~~~~lpVvd~-~~~~GiIt~~Dil~~~i 126 (127)
T d2rc3a1 94 ALITEMRVRHLPVLDD-GKVIGLLSIGDLVKDAI 126 (127)
T ss_dssp HHHHHHTCSEEEEEET-TEEEEEEEHHHHHHHHH
T ss_pred HHHHHCCCcEEEEEEC-CEEEEEEEHHHHHHHHh
Confidence 9999999999999995 89999999999999875
|
| >d1vr9a3 d.37.1.1 (A:1-121) Hypothetical protein TM0892, CBS tandem {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CBS-domain pair superfamily: CBS-domain pair family: CBS-domain pair domain: Hypothetical protein TM0892, CBS tandem species: Thermotoga maritima [TaxId: 2336]
Probab=99.78 E-value=8.5e-19 Score=145.22 Aligned_cols=115 Identities=17% Similarity=0.289 Sum_probs=98.2
Q ss_pred CCCcCeEEEeCCCcHHHHHHHHHhcCCCCCEEEEEcCCCcEEEeeccCcccCcchhHHHHHhhcChhhhhhhhccCCCCc
Q 016003 194 IISTDVVAVDYHSPASLALEAISRSLFDQTSVAVVDSDGFLIGEISPSTLGCCDETVAAAITTLSAGDLMAYIDCGGPPE 273 (397)
Q Consensus 194 ~~~~~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~is~~dl~~~~~~~~~~~~~ls~~Dl~~~~~~~~~~~ 273 (397)
+|++++.++++++++.+|++.|.+++. +++||+|++|+++|+|| .+|++.+..
T Consensus 6 ~m~~~~~~v~~~~tv~ea~~~m~~~~~--~~v~Vvd~~~~~~Gii~-------------------~~dl~~~~~------ 58 (121)
T d1vr9a3 6 WVTQDFPMVEESATVRECLHRMRQYQT--NECIVKDREGHFRGVVN-------------------KEDLLDLDL------ 58 (121)
T ss_dssp GCBSCSCEEETTCBHHHHHHHHHHTTS--SEEEEECTTSBEEEEEE-------------------GGGGTTSCT------
T ss_pred hhcCCCeEECCCCCHHHHHHhhhhcCc--EEEEEEeCCceeEEEee-------------------hhhhhhhhc------
Confidence 799999999999999999999999999 99999999999999955 455543110
Q ss_pred hhHHHHHHHhhhcchhhhhhhhccccCCCCCCCCCCCCCccchhhhccccCCCccccccchhhhhcCCccEEeCCCCcHH
Q 016003 274 DLVRVVKERLKDKGLEGMLEHFDMSSSLMPYLSTSSSSDEESTATSKLTRSGKHSRSMSYSARMVRRAEAIVCHPTSSLM 353 (397)
Q Consensus 274 ~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~~~~sl~ 353 (397)
. .. ....|..++++|++++++.
T Consensus 59 ----------------------~----------------------------~~--------v~~~~~~~~~~v~~~~~l~ 80 (121)
T d1vr9a3 59 ----------------------D----------------------------SS--------VFNKVSLPDFFVHEEDNIT 80 (121)
T ss_dssp ----------------------T----------------------------SB--------SGGGCBCTTCCEETTSBHH
T ss_pred ----------------------c----------------------------cc--------ccccccCccEEECCCCCHH
Confidence 0 00 0123567889999999999
Q ss_pred HHHHHHHHcCCcEEEEEcCCCcEEEEEehHHHHHHHHHHH
Q 016003 354 AVMIQAIAHRVTYVWVIEDDCTLTGIVTFSDLLKVFRKHL 393 (397)
Q Consensus 354 ~v~~~m~~~~i~rl~VVd~~~~lvGvVt~~DIl~~l~~~~ 393 (397)
+++++|.+++++++||||++|+++|+||..||++++.+++
T Consensus 81 ~~~~~~~~~~~~~lpVvde~g~~~Gvit~~dil~~l~~~l 120 (121)
T d1vr9a3 81 HALLLFLEHQEPYLPVVDEEMRLKGAVSLHDFLEALIEAL 120 (121)
T ss_dssp HHHHHHHHCCCSEEEEECTTCBEEEEEEHHHHHHHHHHSC
T ss_pred HHHHHHHhcCceeeeeECCCCeEEEEEEHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999998764
|
| >d2ooxe1 d.37.1.1 (E:3-181) Uncharacterized protein C1556.08c {Schizosaccharomyces pombe [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CBS-domain pair superfamily: CBS-domain pair family: CBS-domain pair domain: Uncharacterized protein C1556.08c species: Schizosaccharomyces pombe [TaxId: 4896]
Probab=99.78 E-value=4.5e-19 Score=156.10 Aligned_cols=150 Identities=16% Similarity=0.161 Sum_probs=103.8
Q ss_pred cCCccccCCCCcCeEEEeCCCcHHHHHHHHHhcCCCCCEEEEEcC-CCcEEEeeccCcccCcchhHHHHHhhcChhhhhh
Q 016003 186 ALSIDSLGIISTDVVAVDYHSPASLALEAISRSLFDQTSVAVVDS-DGFLIGEISPSTLGCCDETVAAAITTLSAGDLMA 264 (397)
Q Consensus 186 ~~ti~~L~~~~~~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~-~g~lvG~is~~dl~~~~~~~~~~~~~ls~~Dl~~ 264 (397)
.+++.|+-..+.+++++.++.|+.+|++.|.++++ +++||+|+ +++++|+ +|.+|++.
T Consensus 19 ~~~~~dvm~~s~~vv~i~~~~~v~~A~~~m~~~~i--~~lpVvd~~~~~~vGi-------------------is~~Di~~ 77 (179)
T d2ooxe1 19 SRTSYDVLPTSFRLIVFDVTLFVKTSLSLLTLNNI--VSAPLWDSEANKFAGL-------------------LTMADFVN 77 (179)
T ss_dssp HSBHHHHSCSEEEEEEEETTSBHHHHHHHHHHHTC--SCEEEEETTTTEEEEE-------------------ECHHHHHH
T ss_pred CCEeeeeCCCCCcEEEEECcchHHHHHHHHHHcCC--CeEEEEeCCCCeeEEE-------------------EeechHHH
Confidence 45666642223679999999999999999999999 99999995 5799999 66777766
Q ss_pred hhccCCCCchhHHHHHHHhhhcchhhhhhhhccccCCCCCCCCCCCCCccchhhhccccCCCccccccchhhhhcCCccE
Q 016003 265 YIDCGGPPEDLVRVVKERLKDKGLEGMLEHFDMSSSLMPYLSTSSSSDEESTATSKLTRSGKHSRSMSYSARMVRRAEAI 344 (397)
Q Consensus 265 ~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 344 (397)
++-. .............+.. . ....+. . .......|..+++
T Consensus 78 ~l~~-------------~~~~~~~~~~~~~~~~----~------------~~~~~~-----~-----~~~~~~~~~~~~i 118 (179)
T d2ooxe1 78 VIKY-------------YYQSSSFPEAIAEIDK----F------------RLLGLR-----E-----VERKIGAIPPETI 118 (179)
T ss_dssp HHHH-------------HHHHCSCGGGGGGGGG----S------------BHHHHH-----H-----HHHHTTCSCSSCC
T ss_pred HHHh-------------ccccccchhhhhhhhc----c------------chhhhc-----c-----cceeeeecccCce
Confidence 3310 0000000000000000 0 000000 0 0001224788999
Q ss_pred EeCCCCcHHHHHHHHHHcCCcEEEEEcCCC-----cEEEEEehHHHHHHHHHHHhh
Q 016003 345 VCHPTSSLMAVMIQAIAHRVTYVWVIEDDC-----TLTGIVTFSDLLKVFRKHLET 395 (397)
Q Consensus 345 t~~~~~sl~~v~~~m~~~~i~rl~VVd~~~-----~lvGvVt~~DIl~~l~~~~~~ 395 (397)
+|.++++|.+|+.+|.++++||+||+|++| +++||||++|||+.+..++..
T Consensus 119 ~v~~~~sl~~~~~~m~~~~~~~lpVvd~~g~~~~~~vvgiiT~~dIlk~l~~~~~~ 174 (179)
T d2ooxe1 119 YVHPMHSLMDACLAMSKSRARRIPLIDVDGETGSEMIVSVLTQYRILKFISMNCKE 174 (179)
T ss_dssp CBCTTSBHHHHHHHHHHTTCSEEEEEEECTTTCCEEEEEEEEHHHHHHHHHTTCGG
T ss_pred EECCCCcHHHHHHHhhhcCceEEEEEecCCCcCCCcEEEEEeHHHHHHHHHHhhhH
Confidence 999999999999999999999999999765 699999999999999887654
|
| >d1yava3 d.37.1.1 (A:13-144) Hypothetical protein YkuL {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CBS-domain pair superfamily: CBS-domain pair family: CBS-domain pair domain: Hypothetical protein YkuL species: Bacillus subtilis [TaxId: 1423]
Probab=99.77 E-value=4.6e-19 Score=148.89 Aligned_cols=131 Identities=20% Similarity=0.196 Sum_probs=101.3
Q ss_pred CCccccCCCCcCeEEEeCCCcHHHHHHHHHhcCCCCCEEEEEcCCCcEEEeeccCcccCcchhHHHHHhhcChhhhhhhh
Q 016003 187 LSIDSLGIISTDVVAVDYHSPASLALEAISRSLFDQTSVAVVDSDGFLIGEISPSTLGCCDETVAAAITTLSAGDLMAYI 266 (397)
Q Consensus 187 ~ti~~L~~~~~~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~is~~dl~~~~~~~~~~~~~ls~~Dl~~~~ 266 (397)
.+++++=+..++|+++.+++++.+|+++|.++++ +++||+|++|+++|+ ++.+|++.++
T Consensus 2 ~tv~~~mip~~~v~~v~~~~tl~~a~~~m~~~~~--s~~pVvd~~~~~vGi-------------------it~~di~~~~ 60 (132)
T d1yava3 2 ATVGQFMIEADKVAHVQVGNNLEHALLVLTKTGY--TAIPVLDPSYRLHGL-------------------IGTNMIMNSI 60 (132)
T ss_dssp CBHHHHSEEGGGSCCEETTCBHHHHHHHHHHHCC--SEEEEECTTCBEEEE-------------------EEHHHHHHHH
T ss_pred CCHHHccccccceEEEcCCCCHHHHHHHHHhhCC--CceEEeecccccccE-------------------EEcchhHHHh
Confidence 4566643335789999999999999999999999 999999999999999 5677776633
Q ss_pred ccCCCCchhHHHHHHHhhhcchhhhhhhhccccCCCCCCCCCCCCCccchhhhccccCCCccccccchhhhhcCCccEEe
Q 016003 267 DCGGPPEDLVRVVKERLKDKGLEGMLEHFDMSSSLMPYLSTSSSSDEESTATSKLTRSGKHSRSMSYSARMVRRAEAIVC 346 (397)
Q Consensus 267 ~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~ 346 (397)
.... ... + +. .. .....+.|.+++++|
T Consensus 61 ~~~~-----------------~~~-----------~--------------~~-----~~------~~~v~~~m~~~~~~v 87 (132)
T d1yava3 61 FGLE-----------------RIE-----------F--------------EK-----LD------QITVEEVMLTDIPRL 87 (132)
T ss_dssp BCSS-----------------SBC-----------G--------------GG-----TT------TSBHHHHSBCSCCEE
T ss_pred hccc-----------------ccc-----------c--------------cc-----cc------ccccccccccccccc
Confidence 2100 000 0 00 00 011234678899999
Q ss_pred CCCCcHHHHHHHHHHcCCcEEEEEcCCCcEEEEEehHHHHHHHHHHH
Q 016003 347 HPTSSLMAVMIQAIAHRVTYVWVIEDDCTLTGIVTFSDLLKVFRKHL 393 (397)
Q Consensus 347 ~~~~sl~~v~~~m~~~~i~rl~VVd~~~~lvGvVt~~DIl~~l~~~~ 393 (397)
++++++.+++..|.+++ .+||||++|+++|+||++||++++.+++
T Consensus 88 ~~~~~l~~~~~~~~~~~--~l~Vvd~~~~~~Givt~~dil~~l~~~i 132 (132)
T d1yava3 88 HINDPIMKGFGMVINNG--FVCVENDEQVFEGIFTRRVVLKELNKHI 132 (132)
T ss_dssp ETTSBHHHHHHHTTTCS--EEEEECTTCBEEEEEEHHHHHHHHHHHC
T ss_pred ccchhHHHHHHHHHhCC--EEEEEccCCEEEEEEEHHHHHHHHHhhC
Confidence 99999999999998765 5999999999999999999999998864
|
| >d1o50a3 d.37.1.1 (A:1-145) Hypothetical protein TM0935 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CBS-domain pair superfamily: CBS-domain pair family: CBS-domain pair domain: Hypothetical protein TM0935 species: Thermotoga maritima [TaxId: 2336]
Probab=99.77 E-value=8.3e-19 Score=149.11 Aligned_cols=135 Identities=16% Similarity=0.180 Sum_probs=98.3
Q ss_pred CCCcCeEEEeCCCcHHHHHHHHHhcCCCCCEEEEEcCCCcEEEeeccCcccCcchhHHHHHhhcChhhhhhhhccCCCCc
Q 016003 194 IISTDVVAVDYHSPASLALEAISRSLFDQTSVAVVDSDGFLIGEISPSTLGCCDETVAAAITTLSAGDLMAYIDCGGPPE 273 (397)
Q Consensus 194 ~~~~~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~is~~dl~~~~~~~~~~~~~ls~~Dl~~~~~~~~~~~ 273 (397)
+|+++++++.+++|+.+|++.|.++++ +++||+|++|+++|+|| .+||..+....
T Consensus 9 ~m~~~p~~v~~~~~v~~a~~~m~~~~~--~~ipVvd~~~~~vGiis-------------------~~Dl~~~~~~~---- 63 (145)
T d1o50a3 9 LISLKPTVVEEDTPIEEIVDRILEDPV--TRTVYVARDNKLVGMIP-------------------VMHLLKVSGFH---- 63 (145)
T ss_dssp SSCCCCEEECTTCBHHHHHHHHHHSTT--CCEEEEEETTEEEEEEE-------------------HHHHHHHHHHH----
T ss_pred hCCCCCEEECCcCcHHHHHHHHHHcCC--ceEEEeccCcceeeeec-------------------cchhhhhhhcc----
Confidence 799999999999999999999999999 99999999999999955 55555432100
Q ss_pred hhHHHHHHHhhhcchhhhhhhhccccCCCCCCCCCCCCCccchhhhccccCCCccccccchhhhhcCCccEEeCCCCcHH
Q 016003 274 DLVRVVKERLKDKGLEGMLEHFDMSSSLMPYLSTSSSSDEESTATSKLTRSGKHSRSMSYSARMVRRAEAIVCHPTSSLM 353 (397)
Q Consensus 274 ~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~~~~sl~ 353 (397)
... ..... .... .. ...+ ...++... ..++++|++++++.
T Consensus 64 --------~~~--~~~~~-~~~~--------------------~~-----~~~~---~~~~~~~~-~~~~~~i~~~~~l~ 103 (145)
T d1o50a3 64 --------FFG--FIPKE-ELIR--------------------SS-----MKRL---IAKNASEI-MLDPVYVHMDTPLE 103 (145)
T ss_dssp --------HHC--CCC----------------------------C-----CCCC---SSCBHHHH-CBCCCCBCTTSBHH
T ss_pred --------ccc--ccchh-HHHH--------------------hh-----hhhc---cccCHHHH-cCCCEEEcCCCCHH
Confidence 000 00000 0000 00 0000 01112222 35678999999999
Q ss_pred HHHHHHHHcCCcEEEEEcCCCcEEEEEehHHHHHHHHHHH
Q 016003 354 AVMIQAIAHRVTYVWVIEDDCTLTGIVTFSDLLKVFRKHL 393 (397)
Q Consensus 354 ~v~~~m~~~~i~rl~VVd~~~~lvGvVt~~DIl~~l~~~~ 393 (397)
+|+.+|.+++++++||||++|+++|+||.+||++++.++.
T Consensus 104 ~a~~~m~~~~i~~lpVVd~~g~i~Gvit~~dil~~l~~~~ 143 (145)
T d1o50a3 104 EALKLMIDNNIQEMPVVDEKGEIVGDLNSLEILLALWKGR 143 (145)
T ss_dssp HHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHHHSC
T ss_pred HHHHHHHHcCceEEEEEeCCCeEEEEEEHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999998754
|
| >d1jr1a4 d.37.1.1 (A:113-232) Type II inosine monophosphate dehydrogenase CBS domains {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CBS-domain pair superfamily: CBS-domain pair family: CBS-domain pair domain: Type II inosine monophosphate dehydrogenase CBS domains species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=99.76 E-value=1.9e-20 Score=155.44 Aligned_cols=115 Identities=19% Similarity=0.189 Sum_probs=61.9
Q ss_pred CCcCeEEEeCCCcHHHHHHHHHhcCCCCCEEEEEcC---CCcEEEeeccCcccCcchhHHHHHhhcChhhhhhhhccCCC
Q 016003 195 ISTDVVAVDYHSPASLALEAISRSLFDQTSVAVVDS---DGFLIGEISPSTLGCCDETVAAAITTLSAGDLMAYIDCGGP 271 (397)
Q Consensus 195 ~~~~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~---~g~lvG~is~~dl~~~~~~~~~~~~~ls~~Dl~~~~~~~~~ 271 (397)
|.++++|+++++++.+|+++|.++++ +++||||+ +|+|+|+|| .+|++.....
T Consensus 2 m~~~pvtv~~~~tl~da~~~m~~~~i--~~~pVvd~~~~~~~lvGivT-------------------~~Di~~~~~~--- 57 (120)
T d1jr1a4 2 FITDPVVLSPKDRVRDVFEAKARHGF--CGIPITDTGRMGSRLVGIIS-------------------SRDIDFLKEE--- 57 (120)
T ss_dssp EECTTCC----CCCC--CCBC-----------------CTTCCC------------------------------------
T ss_pred cccCCEEECCcCCHHHHHHHHHHhCC--CeEEEeeccccCCeEeeeee-------------------eeeeeehhcc---
Confidence 34566799999999999999999999 99999985 679999955 4454321100
Q ss_pred CchhHHHHHHHhhhcchhhhhhhhccccCCCCCCCCCCCCCccchhhhccccCCCccccccchhhhhcCCccEEeCCCCc
Q 016003 272 PEDLVRVVKERLKDKGLEGMLEHFDMSSSLMPYLSTSSSSDEESTATSKLTRSGKHSRSMSYSARMVRRAEAIVCHPTSS 351 (397)
Q Consensus 272 ~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~~~~s 351 (397)
.... .... .+.+..++++|+++++
T Consensus 58 ---------------~~~~--------------------------------~~~~---------~~~~~~~~~~v~~~~~ 81 (120)
T d1jr1a4 58 ---------------EHDR--------------------------------FLEE---------IMTKREDLVVAPAGIT 81 (120)
T ss_dssp ----------------------------------------------------------------CCSBTTTSCCEETTCC
T ss_pred ---------------ccCc--------------------------------eeEE---------EEeeccCceEECCCCC
Confidence 0000 0000 0124568899999999
Q ss_pred HHHHHHHHHHcCCcEEEEEcCCCcEEEEEehHHHHHHH
Q 016003 352 LMAVMIQAIAHRVTYVWVIEDDCTLTGIVTFSDLLKVF 389 (397)
Q Consensus 352 l~~v~~~m~~~~i~rl~VVd~~~~lvGvVt~~DIl~~l 389 (397)
+.+|+++|.+++++++||||++|+++||||++||+|..
T Consensus 82 ~~~a~~~m~~~~i~~lpVVd~~~~lvGiiT~~Di~k~~ 119 (120)
T d1jr1a4 82 LKEANEILQRSKKGKLPIVNENDELVAIIARTDLKKNR 119 (120)
T ss_dssp HHHHHHHTCSCC---CEEEETTTEEEEEECHHHHHHHH
T ss_pred HHHHHHHHHHcCccEEEEEcCCCEEEEEEEHHHhhhcc
Confidence 99999999999999999999999999999999999863
|
| >d3ddja2 d.37.1.1 (A:1-135) Uncharacterized protein SSO3205 {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CBS-domain pair superfamily: CBS-domain pair family: CBS-domain pair domain: Uncharacterized protein SSO3205 species: Sulfolobus solfataricus [TaxId: 2287]
Probab=99.75 E-value=1.5e-18 Score=145.82 Aligned_cols=127 Identities=13% Similarity=0.127 Sum_probs=97.5
Q ss_pred CCCcCeEEEeCCCcHHHHHHHHHhcCCCCCEEEEEcCCCcEEEeeccCcccCcchhHHHHHhhcChhhhhhhhccCCCCc
Q 016003 194 IISTDVVAVDYHSPASLALEAISRSLFDQTSVAVVDSDGFLIGEISPSTLGCCDETVAAAITTLSAGDLMAYIDCGGPPE 273 (397)
Q Consensus 194 ~~~~~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~is~~dl~~~~~~~~~~~~~ls~~Dl~~~~~~~~~~~ 273 (397)
+|+++++++.+++++.+|+++|.++++ +++||+|+ +++|+ ++.+|++.++.......
T Consensus 6 lM~~~~~~v~~~~tl~~a~~~m~~~~~--~~l~V~d~--~lvg~-------------------~~~~~~~~~~~~~~~~~ 62 (135)
T d3ddja2 6 LMIKNPPILSKEDRLGSAFKKINEGGI--GRIIVANE--KIEGL-------------------LTTRDLLSTVESYCKDS 62 (135)
T ss_dssp TCEESCCEECTTSBHHHHHHHTTGGGC--CEEEEESS--SEEEE-------------------EEHHHHHGGGTTCC---
T ss_pred EeeCCCeEECCCCcHHHHHHHHHHhCC--eEEEEEec--ceece-------------------eeccchhhhhccccccc
Confidence 799999999999999999999999999 99999974 78999 55666665432100000
Q ss_pred hhHHHHHHHhhhcchhhhhhhhccccCCCCCCCCCCCCCccchhhhccccCCCccccccchhhhhcCCccEEeCCCCcHH
Q 016003 274 DLVRVVKERLKDKGLEGMLEHFDMSSSLMPYLSTSSSSDEESTATSKLTRSGKHSRSMSYSARMVRRAEAIVCHPTSSLM 353 (397)
Q Consensus 274 ~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~~~~sl~ 353 (397)
..... .... .. .+...+|+.++++|++++++.
T Consensus 63 -------------~~~~~------------------------~~~~---~~--------~~v~~im~~~~~~v~~~~~l~ 94 (135)
T d3ddja2 63 -------------CSQGD------------------------LYHI---ST--------TPIIDYMTPNPVTVYNTSDEF 94 (135)
T ss_dssp -------------CCHHH------------------------HHHH---HT--------SBGGGTSEESCCCEETTSCHH
T ss_pred -------------hhhhh------------------------cccc---cc--------CCHHHHhCCccceEEeccccc
Confidence 00000 0000 00 112346889999999999999
Q ss_pred HHHHHHHHcCCcEEEEEcCCCcEEEEEehHHHHHHHHH
Q 016003 354 AVMIQAIAHRVTYVWVIEDDCTLTGIVTFSDLLKVFRK 391 (397)
Q Consensus 354 ~v~~~m~~~~i~rl~VVd~~~~lvGvVt~~DIl~~l~~ 391 (397)
+++.+|.+++++++||+|++|+++|+||.+||++++.+
T Consensus 95 ~a~~~m~~~~i~~lpVvd~~g~lvGiit~~Dil~~~~~ 132 (135)
T d3ddja2 95 TAINIMVTRNFGSLPVVDINDKPVGIVTEREFLLLYKD 132 (135)
T ss_dssp HHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHGGGGGG
T ss_pred hhhhhhhhcceeEEEEEeCCCEEEEEEEHHHHHHHHHH
Confidence 99999999999999999999999999999999998864
|
| >d2d4za3 d.37.1.1 (A:527-606,A:691-770) Chloride channel protein, CBS tandem {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CBS-domain pair superfamily: CBS-domain pair family: CBS-domain pair domain: Chloride channel protein, CBS tandem species: Marbled electric ray (Torpedo marmorata) [TaxId: 7788]
Probab=99.75 E-value=2.5e-18 Score=147.84 Aligned_cols=147 Identities=13% Similarity=0.108 Sum_probs=99.2
Q ss_pred CCccccCCCCcCeEEEeCCCcHHHHHHHHHhcCCCCCEEEEEcC--CCcEEEeeccCcccCcchhHHHHHhhcChhhhhh
Q 016003 187 LSIDSLGIISTDVVAVDYHSPASLALEAISRSLFDQTSVAVVDS--DGFLIGEISPSTLGCCDETVAAAITTLSAGDLMA 264 (397)
Q Consensus 187 ~ti~~L~~~~~~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~--~g~lvG~is~~dl~~~~~~~~~~~~~ls~~Dl~~ 264 (397)
-++++ +|+++++++++++++.+|+++|.++++ +++||||+ ++.++|++|..||.++..+.. ......
T Consensus 11 ~~V~d--iM~~~~~~v~~~~tv~e~~~~l~~~~~--~~~PVvd~~~~~~lvg~is~~dl~~~l~~~~-------~~~~~~ 79 (160)
T d2d4za3 11 IQVGD--IMVRDVTSIASTSTYGDLLHVLRQTKL--KFFPFVDTPDTNTLLGSIDRTEVEGLLQRRI-------SAYRRQ 79 (160)
T ss_dssp CBTTS--SSBSSCCCEETTCBHHHHHHHHHHCCC--SEEEEESCTTTCBEEEEEEHHHHHHHHHHHH-------HTTSSS
T ss_pred eEHHH--hcCCCCeEECCCCcHHHHHHHHHhcCC--CccccccccccccccccchHHHHHHHHhhcc-------cccccc
Confidence 34554 899999999999999999999999999 99999995 468999976555544221100 000000
Q ss_pred hhccCCCCchhHHHHHHHhhhcchhhhhhhhccccCCCCCCCCCCCCCccchhhhccccCCCccccccchhhhhcCCccE
Q 016003 265 YIDCGGPPEDLVRVVKERLKDKGLEGMLEHFDMSSSLMPYLSTSSSSDEESTATSKLTRSGKHSRSMSYSARMVRRAEAI 344 (397)
Q Consensus 265 ~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 344 (397)
..+ ..... ... ..+.. ..... ........|..+++
T Consensus 80 ~~~---~~~~~-------------~~~-------------------------~~~~~-~~~~~---~~~~~~~~~~~~~~ 114 (160)
T d2d4za3 80 PFE---EMLTL-------------EEI-------------------------YRWEQ-REKNV---VVNFETCRIDQSPF 114 (160)
T ss_dssp CCC---SCCBH-------------HHH-------------------------HHHHH-HHTTC---BCCTTSSCEECCSC
T ss_pred chh---hcccc-------------chh-------------------------hhhhh-hhccc---ccceeeecccCCCE
Confidence 000 00000 000 00000 00000 00112235788999
Q ss_pred EeCCCCcHHHHHHHHHHcCCcEEEEEcCCCcEEEEEehHHHHHHHH
Q 016003 345 VCHPTSSLMAVMIQAIAHRVTYVWVIEDDCTLTGIVTFSDLLKVFR 390 (397)
Q Consensus 345 t~~~~~sl~~v~~~m~~~~i~rl~VVd~~~~lvGvVt~~DIl~~l~ 390 (397)
||+|++++.++++.|.+++++++||+|+ |+++||||++||++++.
T Consensus 115 tv~~~~~l~~~~~~m~~~~v~~l~V~d~-g~lvGiIt~~Di~k~I~ 159 (160)
T d2d4za3 115 QLVEGTSLQKTHTLFSLLGLDRAYVTSM-GKLVGVVALAEIQAAIE 159 (160)
T ss_dssp CBCTTCBHHHHHHHHHHHTCSEEEEEET-TEEEEEEEHHHHHHHHH
T ss_pred EEcCCCCHHHHHHHHHHcCCeEEEEEEC-CEEEEEEEHHHHHHHhC
Confidence 9999999999999999999999999985 89999999999999874
|
| >d2riha1 d.37.1.1 (A:2-132) Uncharacterized protein PAE2072 {Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CBS-domain pair superfamily: CBS-domain pair family: CBS-domain pair domain: Uncharacterized protein PAE2072 species: Pyrobaculum aerophilum [TaxId: 13773]
Probab=99.75 E-value=2.6e-18 Score=143.69 Aligned_cols=118 Identities=12% Similarity=0.117 Sum_probs=96.5
Q ss_pred CCCcCeEEEeCCCcHHHHHHHHHhcCCCCCEEEEE--cCCCcEEEeeccCcccCcchhHHHHHhhcChhhhhhhhccCCC
Q 016003 194 IISTDVVAVDYHSPASLALEAISRSLFDQTSVAVV--DSDGFLIGEISPSTLGCCDETVAAAITTLSAGDLMAYIDCGGP 271 (397)
Q Consensus 194 ~~~~~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVV--d~~g~lvG~is~~dl~~~~~~~~~~~~~ls~~Dl~~~~~~~~~ 271 (397)
+|+++++++++++++.+|++.|.++++ +++||+ |++|+++|+ ++..|++.++..+
T Consensus 6 im~~~~v~v~~~~tl~ea~~~m~~~~~--~~~~Vv~~d~~~~~iGi-------------------~~~~dl~~~~~~~-- 62 (131)
T d2riha1 6 LLKRPPVSLPETATIREVATELAKNRV--GLAVLTARDNPKRPVAV-------------------VSERDILRAVAQR-- 62 (131)
T ss_dssp GCCSCCEEEETTCBHHHHHHHHHHHTC--SEEEEEETTEEEEEEEE-------------------EEHHHHHHHHHTT--
T ss_pred hccCCCEEECCCCcHHHHHHHHHHhCC--CcEEEEEEcCCCEEEEE-------------------Eeeeccccccccc--
Confidence 799999999999999999999999999 999999 556799999 5567776533110
Q ss_pred CchhHHHHHHHhhhcchhhhhhhhccccCCCCCCCCCCCCCccchhhhccccCCCccccccchhhhhcCCccEEeCCCCc
Q 016003 272 PEDLVRVVKERLKDKGLEGMLEHFDMSSSLMPYLSTSSSSDEESTATSKLTRSGKHSRSMSYSARMVRRAEAIVCHPTSS 351 (397)
Q Consensus 272 ~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~~~~s 351 (397)
.. .... ...+..++++|.++++
T Consensus 63 ------------------------------~~--------------------~~~~--------~~~~~~~~~~v~~~~~ 84 (131)
T d2riha1 63 ------------------------------LD--------------------LDGP--------AMPIANSPITVLDTDP 84 (131)
T ss_dssp ------------------------------CC--------------------TTSB--------SGGGCBCCCEEETTSB
T ss_pred ------------------------------cc--------------------cccc--------cccccccceeEeeecc
Confidence 00 0000 0124567889999999
Q ss_pred HHHHHHHHHHcCCcEEEEEcCCCcEEEEEehHHHHHHHHHH
Q 016003 352 LMAVMIQAIAHRVTYVWVIEDDCTLTGIVTFSDLLKVFRKH 392 (397)
Q Consensus 352 l~~v~~~m~~~~i~rl~VVd~~~~lvGvVt~~DIl~~l~~~ 392 (397)
+.+++++|.+++++++||||++|+++|+||..||++++...
T Consensus 85 ~~~a~~~m~~~~i~~lpVvd~~g~l~Giit~~Dll~~~~~l 125 (131)
T d2riha1 85 VHVAAEKMRRHNIRHVVVVNKNGELVGVLSIRDLCFERAIL 125 (131)
T ss_dssp HHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHSCHHHH
T ss_pred hHHHHHHHHHCCeEEEEEEcCCCeEEEEEEHHHHHHHHHHH
Confidence 99999999999999999999999999999999999987653
|
| >d2v8qe2 d.37.1.1 (E:23-181) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CBS-domain pair superfamily: CBS-domain pair family: CBS-domain pair domain: 5'-AMP-activated protein kinase subunit gamma-1, AMPKg species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.74 E-value=2.9e-18 Score=147.93 Aligned_cols=144 Identities=15% Similarity=0.109 Sum_probs=100.8
Q ss_pred cCCccccCCCCcCeEEEeCCCcHHHHHHHHHhcCCCCCEEEEEcC-CCcEEEeeccCcccCcchhHHHHHhhcChhhhhh
Q 016003 186 ALSIDSLGIISTDVVAVDYHSPASLALEAISRSLFDQTSVAVVDS-DGFLIGEISPSTLGCCDETVAAAITTLSAGDLMA 264 (397)
Q Consensus 186 ~~ti~~L~~~~~~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~-~g~lvG~is~~dl~~~~~~~~~~~~~ls~~Dl~~ 264 (397)
.+++.|+--...+++++..++++.+|+++|.++++ +++||||+ +++++|+ +|.+|+..
T Consensus 12 ~~t~~Dlm~~~~~vv~l~~~~sv~eA~~~l~~~~~--~~~pVv~~~~~~~vG~-------------------is~~Dl~~ 70 (159)
T d2v8qe2 12 SHRCYDLIPTSSKLVVFDTSLQVKKAFFALVTNGV--RAAPLWDSKKQSFVGM-------------------LTITDFIN 70 (159)
T ss_dssp HSBGGGGSCSEEEEEEEETTSBHHHHHHHHHHHTC--SEEEEEETTTTEEEEE-------------------EEHHHHHH
T ss_pred CCEEEeECCCCCceEEEcCCCcHHHHHHHHHHcCC--CceeEEECCCCcEEEE-------------------EEHHHHHH
Confidence 45677742224579999999999999999999999 99999985 5799999 55666655
Q ss_pred hhccCCCCchhHHHHHHHhhhcchhhhhhhhccccCCCCCCCCCCCCCccchhhhccccCCCccccccchhhhhcCCccE
Q 016003 265 YIDCGGPPEDLVRVVKERLKDKGLEGMLEHFDMSSSLMPYLSTSSSSDEESTATSKLTRSGKHSRSMSYSARMVRRAEAI 344 (397)
Q Consensus 265 ~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 344 (397)
++... ........... .. .+-..+ .......|..+++
T Consensus 71 ~~~~~-----------~~~~~~~~~~~----~~----------------~~~~~~------------~~~~~~~~~~~~~ 107 (159)
T d2v8qe2 71 ILHRY-----------YKSALVQIYEL----EE----------------HKIETW------------REVYLQDSFKPLV 107 (159)
T ss_dssp HHHHH-----------HHHHTTTCCCG----GG----------------CBHHHH------------HHHHSSSSCCCCC
T ss_pred HHHhc-----------cccccchhhhh----hh----------------hhcccc------------cceeeeeeccceE
Confidence 32100 00000000000 00 000000 0001235788999
Q ss_pred EeCCCCcHHHHHHHHHHcCCcEEEEEcC-CCcEEEEEehHHHHHHHHHHH
Q 016003 345 VCHPTSSLMAVMIQAIAHRVTYVWVIED-DCTLTGIVTFSDLLKVFRKHL 393 (397)
Q Consensus 345 t~~~~~sl~~v~~~m~~~~i~rl~VVd~-~~~lvGvVt~~DIl~~l~~~~ 393 (397)
+|+|+++|.+|+.+|.++++||+||+|+ +|+++||||.+||++++...+
T Consensus 108 ~v~~~~~l~~v~~~m~~~~~~~v~Vvd~~~g~~~GivT~~dilk~l~~~~ 157 (159)
T d2v8qe2 108 CISPNASLFDAVSSLIRNKIHRLPVIDPESGNTLYILTHKRILKFLKLFI 157 (159)
T ss_dssp CBCTTSBHHHHHHHHHHHTCSCEEEECTTTCCEEEEECHHHHHHHHHHHS
T ss_pred EECCCCcHHHHHHHHHHhCCeEEEEEECCCCeEEEEEeHHHHHHHHHHHc
Confidence 9999999999999999999999999985 579999999999999997654
|
| >d1yava3 d.37.1.1 (A:13-144) Hypothetical protein YkuL {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CBS-domain pair superfamily: CBS-domain pair family: CBS-domain pair domain: Hypothetical protein YkuL species: Bacillus subtilis [TaxId: 1423]
Probab=99.73 E-value=6.4e-18 Score=141.80 Aligned_cols=131 Identities=8% Similarity=0.063 Sum_probs=109.6
Q ss_pred cchhhhhhcCCCCeEEEeCChhHHHHHHHHhhCCCceEEEEccCCCCCCCCCCCCCCCeEEEEEehhHHHHHHhhcCCCC
Q 016003 7 ADEVSDLCLGKPALRALSISAAIADALSALKNSDESFISVWDCNCCSNHRKLGDACECQCVGKVCMVDVICYLCKDSNSL 86 (397)
Q Consensus 7 ~~~v~dl~~~k~~li~v~~~~tv~~Al~~L~~~~I~s~PV~d~~~~~~~~~~~~~~~~~~vGiv~~~Dil~~l~~~~~l~ 86 (397)
.++|+++|..+.+++++.+++|+.+|+++|.+++++++||+|.+ ++++|+++..||+.++.+....
T Consensus 1 e~tv~~~mip~~~v~~v~~~~tl~~a~~~m~~~~~s~~pVvd~~-------------~~~vGiit~~di~~~~~~~~~~- 66 (132)
T d1yava3 1 EATVGQFMIEADKVAHVQVGNNLEHALLVLTKTGYTAIPVLDPS-------------YRLHGLIGTNMIMNSIFGLERI- 66 (132)
T ss_dssp TCBHHHHSEEGGGSCCEETTCBHHHHHHHHHHHCCSEEEEECTT-------------CBEEEEEEHHHHHHHHBCSSSB-
T ss_pred CCCHHHccccccceEEEcCCCCHHHHHHHHHhhCCCceEEeecc-------------cccccEEEcchhHHHhhccccc-
Confidence 36899999988899999999999999999999999999999963 6899999999999999863222
Q ss_pred ChhhhhcCChhhhccCCCCCceEEeCCCCCHHHHHHHHhcCCceEEEeccCcchhhhhhhcccccccccCCCCceeeeec
Q 016003 87 SPSLALKQPVSVLLPQLLPPLVMHVEPSCSLLEAMDLMLGGAQNLVVPIKNRLSIKRKQQQKLSSSSLTNHNGREFCWLT 166 (397)
Q Consensus 87 ~~~~~~~~~V~~lm~~~~~~~~~~V~~~~sL~~al~~m~~g~~r~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IIT 166 (397)
........+|+++|.+. ++++.+++++.++++.|.++ +.++|+++ ++..+||||
T Consensus 67 ~~~~~~~~~v~~~m~~~----~~~v~~~~~l~~~~~~~~~~-~~l~Vvd~---------------------~~~~~Givt 120 (132)
T d1yava3 67 EFEKLDQITVEEVMLTD----IPRLHINDPIMKGFGMVINN-GFVCVEND---------------------EQVFEGIFT 120 (132)
T ss_dssp CGGGTTTSBHHHHSBCS----CCEEETTSBHHHHHHHTTTC-SEEEEECT---------------------TCBEEEEEE
T ss_pred ccccccccccccccccc----ccccccchhHHHHHHHHHhC-CEEEEEcc---------------------CCEEEEEEE
Confidence 22344568999999755 89999999999999999853 34676643 256789999
Q ss_pred HHHHHHHHHhc
Q 016003 167 QEDIIRFILSS 177 (397)
Q Consensus 167 q~DIi~~l~~~ 177 (397)
++||++++.++
T Consensus 121 ~~dil~~l~~~ 131 (132)
T d1yava3 121 RRVVLKELNKH 131 (132)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhh
Confidence 99999999764
|
| >d1pbja3 d.37.1.1 (A:2-121) Hypothetical protein MTH1622 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CBS-domain pair superfamily: CBS-domain pair family: CBS-domain pair domain: Hypothetical protein MTH1622 species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=99.72 E-value=1.7e-17 Score=137.12 Aligned_cols=115 Identities=19% Similarity=0.263 Sum_probs=94.7
Q ss_pred CCCcCeEEEeCCCcHHHHHHHHHhcCCCCCEEEEEcCCCcEEEeeccCcccCcchhHHHHHhhcChhhhhhhhccCCCCc
Q 016003 194 IISTDVVAVDYHSPASLALEAISRSLFDQTSVAVVDSDGFLIGEISPSTLGCCDETVAAAITTLSAGDLMAYIDCGGPPE 273 (397)
Q Consensus 194 ~~~~~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~is~~dl~~~~~~~~~~~~~ls~~Dl~~~~~~~~~~~ 273 (397)
+|+++++++++++++.+|++.|.++++ +.+||+++ |+++|+ +|.+|++..+..+.
T Consensus 5 iM~~~~~~v~~~~sl~ea~~~~~~~~~--~~~~V~~~-~~~~Gv-------------------it~~Di~~~l~~~~--- 59 (120)
T d1pbja3 5 VMVTDVDTIDITASLEDVLRNYVENAK--GSSVVVKE-GVRVGI-------------------VTTWDVLEAIAEGD--- 59 (120)
T ss_dssp HCBCSCCEEETTCBHHHHHHHHHHHCC--CEEEEEET-TEEEEE-------------------EEHHHHHHHHHHTC---
T ss_pred hCCCCCeEECCcCcHHHHHHHHHHcCc--eEEEEEeC-CcEEEE-------------------EEeeeccccccccc---
Confidence 799999999999999999999999999 99999975 899999 55677765321000
Q ss_pred hhHHHHHHHhhhcchhhhhhhhccccCCCCCCCCCCCCCccchhhhccccCCCccccccchhhhhcCCccEEeCCCCcHH
Q 016003 274 DLVRVVKERLKDKGLEGMLEHFDMSSSLMPYLSTSSSSDEESTATSKLTRSGKHSRSMSYSARMVRRAEAIVCHPTSSLM 353 (397)
Q Consensus 274 ~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~~~~sl~ 353 (397)
.+ . ..+..++|+.+++++++++++.
T Consensus 60 ---------------------------~~--------------------~--------~~~v~~~m~~~~~~v~~~~~l~ 84 (120)
T d1pbja3 60 ---------------------------DL--------------------A--------EVKVWEVMERDLVTISPRATIK 84 (120)
T ss_dssp ---------------------------CT--------------------T--------TSBHHHHCBCGGGEECTTSCHH
T ss_pred ---------------------------cc--------------------c--------ceeEeeecccccccccchhHHH
Confidence 00 0 0112346788999999999999
Q ss_pred HHHHHHHHcCCcEEEEEcCCCcEEEEEehHHHHHHH
Q 016003 354 AVMIQAIAHRVTYVWVIEDDCTLTGIVTFSDLLKVF 389 (397)
Q Consensus 354 ~v~~~m~~~~i~rl~VVd~~~~lvGvVt~~DIl~~l 389 (397)
+|+.+|.+++++++||+|+ |+++|+||++||+++.
T Consensus 85 ~a~~~m~~~~~~~l~V~~~-~~l~Givt~~Dil~A~ 119 (120)
T d1pbja3 85 EAAEKMVKNVVWRLLVEED-DEIIGVISATDILRAK 119 (120)
T ss_dssp HHHHHHHHHTCSEEEEEET-TEEEEEEEHHHHHHHH
T ss_pred HHHHHHHHcCCeEEEEEEC-CEEEEEEEHHHHHhcC
Confidence 9999999999999999875 8999999999999985
|
| >d2yzqa1 d.37.1.1 (A:123-278) Uncharacterized protein PH1780 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CBS-domain pair superfamily: CBS-domain pair family: CBS-domain pair domain: Uncharacterized protein PH1780 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=99.71 E-value=8.5e-18 Score=144.51 Aligned_cols=130 Identities=18% Similarity=0.132 Sum_probs=105.1
Q ss_pred cccchhhhhhcCCCCeEEEeCChhHHHHHHHHhhCCCceEEEEccCCCCCCCCCCCCCCCeEEEEEehhHHHHHHhhcCC
Q 016003 5 LLADEVSDLCLGKPALRALSISAAIADALSALKNSDESFISVWDCNCCSNHRKLGDACECQCVGKVCMVDVICYLCKDSN 84 (397)
Q Consensus 5 ~~~~~v~dl~~~k~~li~v~~~~tv~~Al~~L~~~~I~s~PV~d~~~~~~~~~~~~~~~~~~vGiv~~~Dil~~l~~~~~ 84 (397)
+.+.+|.++| .++++++++++++.+|+++|.+++++++||+|+ +++++|++|..|++.++.....
T Consensus 1 ~~~~~v~~~m--~r~v~~v~~~~~l~~a~~~m~~~~~~~lPVvd~-------------~~~lvG~it~~Dl~~~~~~~~~ 65 (156)
T d2yzqa1 1 YKGVEIEPYY--QRYVSIVWEGTPLKAALKALLLSNSMALPVVDS-------------EGNLVGIVDETDLLRDSEIVRI 65 (156)
T ss_dssp GGGCBSTTTS--BSCCCCEETTSBHHHHHHHHHTCSSSEEEEECT-------------TSCEEEEEEGGGGGGCGGGCC-
T ss_pred CCCCCHHHHh--cCCCeEECCcCcHHHHHHHHHHcCCCEEEEEeC-------------CCCceeEEeeeechhhhccccc
Confidence 3577899999 578999999999999999999999999999996 3689999999999875542100
Q ss_pred C--------------C----------ChhhhhcCChhhhccCCCCCceEEeCCCCCHHHHHHHHh-cCCceEEEeccCcc
Q 016003 85 S--------------L----------SPSLALKQPVSVLLPQLLPPLVMHVEPSCSLLEAMDLML-GGAQNLVVPIKNRL 139 (397)
Q Consensus 85 l--------------~----------~~~~~~~~~V~~lm~~~~~~~~~~V~~~~sL~~al~~m~-~g~~r~~V~~~~~~ 139 (397)
. . ......+.+|.++|... ++++.++++|.++++.|. +|+++++|++++
T Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~m~~~----~~tv~~~~~l~~~~~~m~~~~~~~lpVvd~~-- 139 (156)
T d2yzqa1 66 MKSTELAASSEEEWILESHPTLLFEKFELQLPNKPVAEIMTRD----VIVATPHMTVHEVALKMAKYSIEQLPVIRGE-- 139 (156)
T ss_dssp -------------------------------CCCBGGGTCBSS----CCCBCTTSBHHHHHHHHHHHTCSEEEEEETT--
T ss_pred ccccccccchhhhhhhhhhhhhhHHHhhhcccCCEeehhcccC----ceEECcccccHHHHHHHHHcCeeEEEEEeCC--
Confidence 0 0 00112356899999755 899999999999999999 799999998643
Q ss_pred hhhhhhhcccccccccCCCCceeeeecHHHHHHHH
Q 016003 140 SIKRKQQQKLSSSSLTNHNGREFCWLTQEDIIRFI 174 (397)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~IITq~DIi~~l 174 (397)
|+.+||||++||+++|
T Consensus 140 -------------------g~lvGivt~~Dil~~l 155 (156)
T d2yzqa1 140 -------------------GDLIGLIRDFDLLKVL 155 (156)
T ss_dssp -------------------TEEEEEEEHHHHGGGG
T ss_pred -------------------CEEEEEEEHHHHHHHh
Confidence 4678999999999875
|
| >d1y5ha3 d.37.1.1 (A:2-124) Hypothetical protein Rv2626c {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CBS-domain pair superfamily: CBS-domain pair family: CBS-domain pair domain: Hypothetical protein Rv2626c species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.71 E-value=9.7e-18 Score=139.06 Aligned_cols=121 Identities=13% Similarity=0.134 Sum_probs=102.6
Q ss_pred chhhhhhcCCCCeEEEeCChhHHHHHHHHhhCCCceEEEEccCCCCCCCCCCCCCCCeEEEEEehhHHHHHHhhcCCCCC
Q 016003 8 DEVSDLCLGKPALRALSISAAIADALSALKNSDESFISVWDCNCCSNHRKLGDACECQCVGKVCMVDVICYLCKDSNSLS 87 (397)
Q Consensus 8 ~~v~dl~~~k~~li~v~~~~tv~~Al~~L~~~~I~s~PV~d~~~~~~~~~~~~~~~~~~vGiv~~~Dil~~l~~~~~l~~ 87 (397)
++++|+|. ++++++++++|+.+|++.|.++++.++||+|. +++++|+++.+||+.++.....
T Consensus 1 tt~~diM~--~~~~~v~~~~tl~~a~~~m~~~~~~~~pVvd~-------------~~~~~Giit~~Di~~~~~~~~~--- 62 (123)
T d1y5ha3 1 TTARDIMN--AGVTCVGEHETLTAAAQYMREHDIGALPICGD-------------DDRLHGMLTDRDIVIKGLAAGL--- 62 (123)
T ss_dssp CCHHHHSE--ETCCCEETTSBHHHHHHHHHHHTCSEEEEECG-------------GGBEEEEEEHHHHHHTTGGGTC---
T ss_pred CCHHHhcC--CCCcEECCcCcHHHHHHHHHHcCCCceEEEec-------------cchhhhhhhhhhHhhhhhhcCC---
Confidence 68999994 67999999999999999999999999999996 3689999999999987654211
Q ss_pred hhhhhcCChhhhccCCCCCceEEeCCCCCHHHHHHHHh-cCCceEEEeccCcchhhhhhhcccccccccCCCCceeeeec
Q 016003 88 PSLALKQPVSVLLPQLLPPLVMHVEPSCSLLEAMDLML-GGAQNLVVPIKNRLSIKRKQQQKLSSSSLTNHNGREFCWLT 166 (397)
Q Consensus 88 ~~~~~~~~V~~lm~~~~~~~~~~V~~~~sL~~al~~m~-~g~~r~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IIT 166 (397)
.....+++++|... ++++++++++.+|++.|. +++++++|.++ ++.+|+||
T Consensus 63 --~~~~~~v~~im~~~----~~~v~~~~~~~~~~~~m~~~~~~~lpVvd~----------------------~~lvGiit 114 (123)
T d1y5ha3 63 --DPNTATAGELARDS----IYYVDANASIQEMLNVMEEHQVRRVPVISE----------------------HRLVGIVT 114 (123)
T ss_dssp --CTTTSBHHHHHTTC----CCCEETTCCHHHHHHHHHHHTCSEEEEEET----------------------TEEEEEEE
T ss_pred --CcccceEEEEeecc----ceeeeecchHHHHHHHHHHcCceEEEEEEC----------------------CEEEEEEE
Confidence 12245788999654 899999999999999999 89999999853 35789999
Q ss_pred HHHHHHHH
Q 016003 167 QEDIIRFI 174 (397)
Q Consensus 167 q~DIi~~l 174 (397)
..||+++|
T Consensus 115 ~~Dil~~l 122 (123)
T d1y5ha3 115 EADIARHL 122 (123)
T ss_dssp HHHHHHTC
T ss_pred HHHHHhhC
Confidence 99999874
|
| >d2rc3a1 d.37.1.1 (A:23-149) Uncharacterized protein NE2398 {Nitrosomonas europaea [TaxId: 915]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CBS-domain pair superfamily: CBS-domain pair family: CBS-domain pair domain: Uncharacterized protein NE2398 species: Nitrosomonas europaea [TaxId: 915]
Probab=99.69 E-value=5.7e-17 Score=135.15 Aligned_cols=122 Identities=16% Similarity=0.123 Sum_probs=105.1
Q ss_pred hhhhhhcCC-CCeEEEeCChhHHHHHHHHhhCCCceEEEEccCCCCCCCCCCCCCCCeEEEEEehhHHHHHHhhcCCCCC
Q 016003 9 EVSDLCLGK-PALRALSISAAIADALSALKNSDESFISVWDCNCCSNHRKLGDACECQCVGKVCMVDVICYLCKDSNSLS 87 (397)
Q Consensus 9 ~v~dl~~~k-~~li~v~~~~tv~~Al~~L~~~~I~s~PV~d~~~~~~~~~~~~~~~~~~vGiv~~~Dil~~l~~~~~l~~ 87 (397)
+|+|+|..| ++++++++++|+.+|+++|.+++++++||.+. ++++|++|..||++.+....
T Consensus 3 tV~dim~~k~~~v~~i~~~~tl~~a~~~m~~~~~~~vpV~~~--------------~~~vGiit~~Di~~~~~~~~---- 64 (127)
T d2rc3a1 3 TVKHLLQEKGHTVVAIGPDDSVFNAMQKMAADNIGALLVMKD--------------EKLVGILTERDFSRKSYLLD---- 64 (127)
T ss_dssp BHHHHHHHHCCCCCEECTTSBHHHHHHHHHHHTCSEEEEEET--------------TEEEEEEEHHHHHHHGGGSS----
T ss_pred cHHHHHccCCCccEEECCcCcHHHHHHHHHHcCCCEEEEEEC--------------CeEEEEEEccchhhhhhhhc----
Confidence 699999765 57999999999999999999999999999983 58999999999998775422
Q ss_pred hhhhhcCChhhhccCCCCCceEEeCCCCCHHHHHHHHh-cCCceEEEeccCcchhhhhhhcccccccccCCCCceeeeec
Q 016003 88 PSLALKQPVSVLLPQLLPPLVMHVEPSCSLLEAMDLML-GGAQNLVVPIKNRLSIKRKQQQKLSSSSLTNHNGREFCWLT 166 (397)
Q Consensus 88 ~~~~~~~~V~~lm~~~~~~~~~~V~~~~sL~~al~~m~-~g~~r~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IIT 166 (397)
....+.+++++|... ++++.+++++.+|++.|. +++++++|.++ ++++|+||
T Consensus 65 -~~~~~~~v~~im~~~----~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~----------------------~~~~GiIt 117 (127)
T d2rc3a1 65 -KPVKDTQVKEIMTRQ----VAYVDLNNTNEDCMALITEMRVRHLPVLDD----------------------GKVIGLLS 117 (127)
T ss_dssp -SCGGGSBGGGTSBCS----CCCBCTTCBHHHHHHHHHHHTCSEEEEEET----------------------TEEEEEEE
T ss_pred -ccccceeEeeeccce----eEEeccCccHHHHHHHHHHCCCcEEEEEEC----------------------CEEEEEEE
Confidence 124567899999765 899999999999999999 79999999852 35789999
Q ss_pred HHHHHHHHH
Q 016003 167 QEDIIRFIL 175 (397)
Q Consensus 167 q~DIi~~l~ 175 (397)
+.||++.+.
T Consensus 118 ~~Dil~~~i 126 (127)
T d2rc3a1 118 IGDLVKDAI 126 (127)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 999999864
|
| >d2o16a3 d.37.1.1 (A:20-158) Hypothetical protein VC0737 {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CBS-domain pair superfamily: CBS-domain pair family: CBS-domain pair domain: Hypothetical protein VC0737 species: Vibrio cholerae [TaxId: 666]
Probab=99.69 E-value=6.8e-17 Score=136.71 Aligned_cols=128 Identities=20% Similarity=0.210 Sum_probs=106.1
Q ss_pred hhhhhhcCCCCeEEEeCChhHHHHHHHHhhCCCceEEEEccCCCCCCCCCCCCCCCeEEEEEehhHHHHHHhhcCC--CC
Q 016003 9 EVSDLCLGKPALRALSISAAIADALSALKNSDESFISVWDCNCCSNHRKLGDACECQCVGKVCMVDVICYLCKDSN--SL 86 (397)
Q Consensus 9 ~v~dl~~~k~~li~v~~~~tv~~Al~~L~~~~I~s~PV~d~~~~~~~~~~~~~~~~~~vGiv~~~Dil~~l~~~~~--l~ 86 (397)
+|+|+|. ++++++++++|+.+|+++|.+++++++||+|.+ ++++|+|+..|++.++..... ..
T Consensus 3 ~v~diM~--~~~~~v~~~~tl~~a~~~m~~~~~~~lpVvd~~-------------~~~~Giit~~dl~~~~~~~~~~~~~ 67 (139)
T d2o16a3 3 KVEDMMT--RHPHTLLRTHTLNDAKHLMEALDIRHVPIVDAN-------------KKLLGIVSQRDLLAAQESSLQRSAQ 67 (139)
T ss_dssp BGGGTSE--ESCCCBCTTSBHHHHHHHHHHHTCSEEEEECTT-------------CBEEEEEEHHHHHHHHHHHCC----
T ss_pred EHHHhCc--CCCeEECCcCCHHHHHHHHHHcCCCeeeeeccc-------------ccccccccHHHHHHHHHhhhhhhhc
Confidence 6899995 578999999999999999999999999999963 689999999999998875211 11
Q ss_pred ChhhhhcCChhhhccCCCCCceEEeCCCCCHHHHHHHHh-cCCceEEEeccCcchhhhhhhcccccccccCCCCceeeee
Q 016003 87 SPSLALKQPVSVLLPQLLPPLVMHVEPSCSLLEAMDLML-GGAQNLVVPIKNRLSIKRKQQQKLSSSSLTNHNGREFCWL 165 (397)
Q Consensus 87 ~~~~~~~~~V~~lm~~~~~~~~~~V~~~~sL~~al~~m~-~g~~r~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~II 165 (397)
......+.||+++|.+. ++++++++++.+|++.|. +++++++|.++ ++.+|+|
T Consensus 68 ~~~~~~~~~v~~im~~~----~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~----------------------~~lvGii 121 (139)
T d2o16a3 68 GDSLAFETPLFEVMHTD----VTSVAPQAGLKESAIYMQKHKIGCLPVVAK----------------------DVLVGII 121 (139)
T ss_dssp -----CCCBHHHHSCSC----EEEBCTTSBHHHHHHHHHHTTCSCEEEEET----------------------TEEEEEE
T ss_pred ccccccccchhHhhccc----cccccccchHHHHHHHHHHcCceEEEEEEC----------------------CEEEEEE
Confidence 11234568999999765 899999999999999999 89999998853 3578999
Q ss_pred cHHHHHHHHHhc
Q 016003 166 TQEDIIRFILSS 177 (397)
Q Consensus 166 Tq~DIi~~l~~~ 177 (397)
|.+||++++.+.
T Consensus 122 t~~Dil~~~~~~ 133 (139)
T d2o16a3 122 TDSDFVTIAINL 133 (139)
T ss_dssp CHHHHHHHHHHH
T ss_pred EHHHHHHHHHHH
Confidence 999999998753
|
| >d2ef7a1 d.37.1.1 (A:1-127) Uncharacterized protein ST2348 {Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CBS-domain pair superfamily: CBS-domain pair family: CBS-domain pair domain: Uncharacterized protein ST2348 species: Sulfolobus tokodaii [TaxId: 111955]
Probab=99.68 E-value=9.4e-17 Score=133.73 Aligned_cols=124 Identities=17% Similarity=0.197 Sum_probs=107.9
Q ss_pred cccchhhhhhcCCCCeEEEeCChhHHHHHHHHhhCCCceEEEEccCCCCCCCCCCCCCCCeEEEEEehhHHHHHHhhcCC
Q 016003 5 LLADEVSDLCLGKPALRALSISAAIADALSALKNSDESFISVWDCNCCSNHRKLGDACECQCVGKVCMVDVICYLCKDSN 84 (397)
Q Consensus 5 ~~~~~v~dl~~~k~~li~v~~~~tv~~Al~~L~~~~I~s~PV~d~~~~~~~~~~~~~~~~~~vGiv~~~Dil~~l~~~~~ 84 (397)
|.+.+|+|+| +++++++++++|+.+|+++|.+++++++||.+. ++++|+++..|++.++.++.
T Consensus 1 l~~~~V~d~m--~~~~v~v~~~~tl~~a~~~m~~~~~~~~pV~d~--------------~~~~Givt~~dl~~~~~~~~- 63 (127)
T d2ef7a1 1 MEEEIVKEYM--KTQVISVTKDAKLNDIAKVMTEKNIGSVIVVDG--------------NKPVGIITERDIVKAIGKGK- 63 (127)
T ss_dssp CCCCBGGGTS--BCSCCEEETTCBHHHHHHHHHHHTCSEEEEEET--------------TEEEEEEEHHHHHHHHHTTC-
T ss_pred CCccCHHHhC--CCCCeEECCcCcHHHHHHHHHHcCCceEEeecc--------------cchhhhcchhHHHHHHHhhc-
Confidence 4577899999 468999999999999999999999999999984 58999999999999987532
Q ss_pred CCChhhhhcCChhhhccCCCCCceEEeCCCCCHHHHHHHHh-cCCceEEEeccCcchhhhhhhcccccccccCCCCceee
Q 016003 85 SLSPSLALKQPVSVLLPQLLPPLVMHVEPSCSLLEAMDLML-GGAQNLVVPIKNRLSIKRKQQQKLSSSSLTNHNGREFC 163 (397)
Q Consensus 85 l~~~~~~~~~~V~~lm~~~~~~~~~~V~~~~sL~~al~~m~-~g~~r~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (397)
..+.++.++|.++ +.++.+++++.+|++.|. +++++++|++++ ++.+|
T Consensus 64 ------~~~~~v~~~~~~~----~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~---------------------~~lvG 112 (127)
T d2ef7a1 64 ------SLETKAEEFMTAS----LITIREDSPITGALALMRQFNIRHLPVVDDK---------------------GNLKG 112 (127)
T ss_dssp ------CTTCBGGGTSEEC----CCCEETTSBHHHHHHHHHHHTCSEEEEECTT---------------------SCEEE
T ss_pred ------cccchhhhhhhhh----ccccccccchhHHHHHHHHcCceEEEEEeCC---------------------CeEEE
Confidence 2346899999765 889999999999999999 799999998532 47889
Q ss_pred eecHHHHHHHHHh
Q 016003 164 WLTQEDIIRFILS 176 (397)
Q Consensus 164 IITq~DIi~~l~~ 176 (397)
+||..||++.+.+
T Consensus 113 iit~~Dll~~i~~ 125 (127)
T d2ef7a1 113 IISIRDITRAIDD 125 (127)
T ss_dssp EEEHHHHHHHHHH
T ss_pred EEEHHHHHHHHHh
Confidence 9999999999864
|
| >d3ddja1 d.37.1.1 (A:136-276) Uncharacterized protein SSO3205 {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CBS-domain pair superfamily: CBS-domain pair family: CBS-domain pair domain: Uncharacterized protein SSO3205 species: Sulfolobus solfataricus [TaxId: 2287]
Probab=99.67 E-value=8.8e-17 Score=135.69 Aligned_cols=129 Identities=16% Similarity=0.170 Sum_probs=109.3
Q ss_pred chhhhhhcCCCCeEEEeCChhHHHHHHHHhhCCCceEEEEccCCCCCCCCCCCCCCCeEEEEEehhHHHHHHhhcCCCCC
Q 016003 8 DEVSDLCLGKPALRALSISAAIADALSALKNSDESFISVWDCNCCSNHRKLGDACECQCVGKVCMVDVICYLCKDSNSLS 87 (397)
Q Consensus 8 ~~v~dl~~~k~~li~v~~~~tv~~Al~~L~~~~I~s~PV~d~~~~~~~~~~~~~~~~~~vGiv~~~Dil~~l~~~~~l~~ 87 (397)
++|+++|. ++++++++++|+.+|+++|.+++++++||++.+ ++++|+++..|+++++.......+
T Consensus 2 ~~V~~iMt--~~v~~v~~~~tl~~a~~~m~~~~~~~ipVv~~~-------------~~~~g~i~~~di~~~~~~~~~~~~ 66 (141)
T d3ddja1 2 FPVKVFMS--TKVQTIYKEVRLDQAVKLMLRRGFRRLPVIDDD-------------NKVVGIVTVVNAIKQLAKAVDKLD 66 (141)
T ss_dssp CBHHHHSB--CSCCCEETTSBHHHHHHHHHHHTCSEEEEECTT-------------SCEEEEEEHHHHHHHHHHHHHHTC
T ss_pred EeeHHhCc--CCCeEEcCcCcHHHHHHHHHHcCCCeeeccccc-------------Cccccccccccchhhhhccccccc
Confidence 46899994 579999999999999999999999999999973 689999999999998864222122
Q ss_pred hhhhhcCChhhhccCCCCCceEEeCCCCCHHHHHHHHh-cCCceEEEeccCcchhhhhhhcccccccccCCCCceeeeec
Q 016003 88 PSLALKQPVSVLLPQLLPPLVMHVEPSCSLLEAMDLML-GGAQNLVVPIKNRLSIKRKQQQKLSSSSLTNHNGREFCWLT 166 (397)
Q Consensus 88 ~~~~~~~~V~~lm~~~~~~~~~~V~~~~sL~~al~~m~-~g~~r~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IIT 166 (397)
.....+.+|+++|... ++++.+++++.++++.|. +++++++|++.+ ++.+|+||
T Consensus 67 ~~~~~~~~v~~im~~~----~~~v~~~~~~~~~~~~m~~~~~~~l~Vvd~~---------------------~~~iGiIt 121 (141)
T d3ddja1 67 PDYFYGKVVKDVMVTN----LVTIDELASVNRAAAEMIVKRIGSLLILNKD---------------------NTIRGIIT 121 (141)
T ss_dssp THHHHTCBHHHHSBCC----CCBCCTTSBHHHHHHHHHHHTCSEEEEECTT---------------------SCEEEEEE
T ss_pred cccccCCCHHHHhCcc----cccccccchhhHHHHHHHHcCCCEEEEEccC---------------------CEEEEEEE
Confidence 2345678999999765 889999999999999999 799999998632 46889999
Q ss_pred HHHHHHHHHh
Q 016003 167 QEDIIRFILS 176 (397)
Q Consensus 167 q~DIi~~l~~ 176 (397)
.+||++.+.+
T Consensus 122 ~~Dil~~l~~ 131 (141)
T d3ddja1 122 ERDLLIALHH 131 (141)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999999875
|
| >d2yzia1 d.37.1.1 (A:4-135) Uncharacterized protein PH0107 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CBS-domain pair superfamily: CBS-domain pair family: CBS-domain pair domain: Uncharacterized protein PH0107 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=99.67 E-value=1.9e-16 Score=132.76 Aligned_cols=124 Identities=15% Similarity=0.172 Sum_probs=106.5
Q ss_pred cchhhhhhcCCCCeEEEeCChhHHHHHHHHhhCCCceEEEEccCCCCCCCCCCCCCCCeEEEEEehhHHHHHHhhcCCCC
Q 016003 7 ADEVSDLCLGKPALRALSISAAIADALSALKNSDESFISVWDCNCCSNHRKLGDACECQCVGKVCMVDVICYLCKDSNSL 86 (397)
Q Consensus 7 ~~~v~dl~~~k~~li~v~~~~tv~~Al~~L~~~~I~s~PV~d~~~~~~~~~~~~~~~~~~vGiv~~~Dil~~l~~~~~l~ 86 (397)
...|+|+| +++++++++++|+.+|++.|.+++++++||+|.+ ++++|+++..||+.++..+.
T Consensus 4 ~~pV~~im--~~~~~~v~~~~t~~~a~~~m~~~~~~~~~Vvd~~-------------~~~~Giit~~di~~~~~~~~--- 65 (132)
T d2yzia1 4 KAPIKVYM--TKKLLGVKPSTSVQEASRLMMEFDVGSLVVINDD-------------GNVVGFFTKSDIIRRVIVPG--- 65 (132)
T ss_dssp TSBGGGTC--BCCCCEECTTSBHHHHHHHHHHHTCSEEEEECTT-------------SCEEEEEEHHHHHHHTTTTC---
T ss_pred CCcHHHHc--CCCCeEECCcCcHHHHHHHHHHcCCcEEEEeccc-------------ceeeeeeeHHHHHHHHhhcc---
Confidence 45799999 4689999999999999999999999999999973 68999999999999876532
Q ss_pred ChhhhhcCChhhhccCCCCCceEEeCCCCCHHHHHHHHh-cCCceEEEeccCcchhhhhhhcccccccccCCCCceeeee
Q 016003 87 SPSLALKQPVSVLLPQLLPPLVMHVEPSCSLLEAMDLML-GGAQNLVVPIKNRLSIKRKQQQKLSSSSLTNHNGREFCWL 165 (397)
Q Consensus 87 ~~~~~~~~~V~~lm~~~~~~~~~~V~~~~sL~~al~~m~-~g~~r~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~II 165 (397)
...+.+++++|... ++++.+++++.+|++.|. +++++++|..+ ++.+|+|
T Consensus 66 ---~~~~~~v~~im~~~----~~~v~~~~~~~~~~~~m~~~~~~~l~V~~~----------------------~~~vGiv 116 (132)
T d2yzia1 66 ---LPYDIPVERIMTRN----LITANVNTPLGEVLRKMAEHRIKHILIEEE----------------------GKIVGIF 116 (132)
T ss_dssp ---CCTTSBGGGTCBCS----CCEEETTSBHHHHHHHHHHHTCSEEEEEET----------------------TEEEEEE
T ss_pred ---CccceeEeeccccc----ccccCcchHHHHHHHHHHHcCCCEEEEEEC----------------------CEEEEEE
Confidence 23467899999755 899999999999999999 79999987532 3678999
Q ss_pred cHHHHHHHHHhc
Q 016003 166 TQEDIIRFILSS 177 (397)
Q Consensus 166 Tq~DIi~~l~~~ 177 (397)
|+.||++.+.+.
T Consensus 117 t~~Dil~a~~~~ 128 (132)
T d2yzia1 117 TLSDLLEASRRR 128 (132)
T ss_dssp EHHHHHHHHHCC
T ss_pred EHHHHHHHHHHH
Confidence 999999998753
|
| >d2j9la1 d.37.1.1 (A:578-746) Chloride channel protein 5, ClC-5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CBS-domain pair superfamily: CBS-domain pair family: CBS-domain pair domain: Chloride channel protein 5, ClC-5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.66 E-value=1e-16 Score=139.85 Aligned_cols=137 Identities=18% Similarity=0.145 Sum_probs=91.7
Q ss_pred eEEEeCCCcHHHHHHHHHhcCCCCCEEEEE--cCCCcEEEeeccCcccCcchhHHHHHhhcChhhhhhhhccCCCCchhH
Q 016003 199 VVAVDYHSPASLALEAISRSLFDQTSVAVV--DSDGFLIGEISPSTLGCCDETVAAAITTLSAGDLMAYIDCGGPPEDLV 276 (397)
Q Consensus 199 v~tv~~~~~~~~a~~~m~~~~i~~s~vpVV--d~~g~lvG~is~~dl~~~~~~~~~~~~~ls~~Dl~~~~~~~~~~~~l~ 276 (397)
++++.+++++.+|+++|.++++ +++||| +++|+++|+|| .+|++.++...
T Consensus 19 ~v~~~~~~tv~~a~~ll~~~~~--~~~PVV~~~~~~~lvG~is-------------------~~dl~~~l~~~------- 70 (169)
T d2j9la1 19 TVLTQDSMTVEDVETIISETTY--SGFPVVVSRESQRLVGFVL-------------------RRDLIISIENA------- 70 (169)
T ss_dssp CCEESSCEEHHHHHHHHHHCCC--SEEEEESCTTTCBEEEEEE-------------------HHHHHHHHHHH-------
T ss_pred EEECCCcCCHHHHHHHHHHcCC--CceeeeecCCCCeEEEEEE-------------------hHHHHHHHhcc-------
Confidence 3557788999999999999999 999999 45679999955 55555422100
Q ss_pred HHHHHHhhhcch-hhhhhhhccccCCCCCCCCCCCCCccchhhhccccCCCccccccchhhhhcCCccEEeCCCCcHHHH
Q 016003 277 RVVKERLKDKGL-EGMLEHFDMSSSLMPYLSTSSSSDEESTATSKLTRSGKHSRSMSYSARMVRRAEAIVCHPTSSLMAV 355 (397)
Q Consensus 277 ~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~~~~sl~~v 355 (397)
....... ......+... .. ..............+|.++++||.|++++.++
T Consensus 71 -----~~~~~~~~~~~~~~~~~~--~~---------------------~~~~~~~~~~~v~~im~~~~~tv~~~~~l~~v 122 (169)
T d2j9la1 71 -----RKKQDGVVSTSIIYFTEH--SP---------------------PLPPYTPPTLKLRNILDLSPFTVTDLTPMEIV 122 (169)
T ss_dssp -----HTSCSCCCTTCEEECSSS--CC---------------------CCCTTCCCCEECGGGEESSCCEEETTSBHHHH
T ss_pred -----cccccccccchhhhhccc--ch---------------------hhhhccccccchhhhccCCCEEECCCCcHHHH
Confidence 0000000 0000000000 00 00000000112345788999999999999999
Q ss_pred HHHHHHcCCcEEEEEcCCCcEEEEEehHHHHHHHHHH
Q 016003 356 MIQAIAHRVTYVWVIEDDCTLTGIVTFSDLLKVFRKH 392 (397)
Q Consensus 356 ~~~m~~~~i~rl~VVd~~~~lvGvVt~~DIl~~l~~~ 392 (397)
+++|.+++++++||+|+ |+++||||++||++++.+.
T Consensus 123 ~~~~~~~~~~~l~V~d~-g~lvGiIt~~Dil~~l~~~ 158 (169)
T d2j9la1 123 VDIFRKLGLRQCLVTHN-GRLLGIITKKDVLKHIAQM 158 (169)
T ss_dssp HHHHHHHTCSEEEEEET-TEEEEEEEHHHHHHHHHHH
T ss_pred HHHHHhcCceEEEEEEC-CEEEEEEEHHHHHHHHHHH
Confidence 99999999999999874 8999999999999999874
|
| >d1o50a3 d.37.1.1 (A:1-145) Hypothetical protein TM0935 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CBS-domain pair superfamily: CBS-domain pair family: CBS-domain pair domain: Hypothetical protein TM0935 species: Thermotoga maritima [TaxId: 2336]
Probab=99.66 E-value=4.1e-16 Score=132.11 Aligned_cols=129 Identities=14% Similarity=0.105 Sum_probs=103.1
Q ss_pred chhhhhhcCCCCeEEEeCChhHHHHHHHHhhCCCceEEEEccCCCCCCCCCCCCCCCeEEEEEehhHHHHHHhhc--CCC
Q 016003 8 DEVSDLCLGKPALRALSISAAIADALSALKNSDESFISVWDCNCCSNHRKLGDACECQCVGKVCMVDVICYLCKD--SNS 85 (397)
Q Consensus 8 ~~v~dl~~~k~~li~v~~~~tv~~Al~~L~~~~I~s~PV~d~~~~~~~~~~~~~~~~~~vGiv~~~Dil~~l~~~--~~l 85 (397)
..|.++| +++.+++++++|+.+|++.|.+++++++||+|. +++++|+|+..||+.++... ...
T Consensus 4 ~~v~~~m--~~~p~~v~~~~~v~~a~~~m~~~~~~~ipVvd~-------------~~~~vGiis~~Dl~~~~~~~~~~~~ 68 (145)
T d1o50a3 4 KDVCKLI--SLKPTVVEEDTPIEEIVDRILEDPVTRTVYVAR-------------DNKLVGMIPVMHLLKVSGFHFFGFI 68 (145)
T ss_dssp HHHTTSS--CCCCEEECTTCBHHHHHHHHHHSTTCCEEEEEE-------------TTEEEEEEEHHHHHHHHHHHHHCCC
T ss_pred eEhHHhC--CCCCEEECCcCcHHHHHHHHHHcCCceEEEecc-------------Ccceeeeeccchhhhhhhccccccc
Confidence 4566677 456799999999999999999999999999996 36999999999999887631 000
Q ss_pred -------CChhhhhcCChhhhccCCCCCceEEeCCCCCHHHHHHHHh-cCCceEEEeccCcchhhhhhhcccccccccCC
Q 016003 86 -------LSPSLALKQPVSVLLPQLLPPLVMHVEPSCSLLEAMDLML-GGAQNLVVPIKNRLSIKRKQQQKLSSSSLTNH 157 (397)
Q Consensus 86 -------~~~~~~~~~~V~~lm~~~~~~~~~~V~~~~sL~~al~~m~-~g~~r~~V~~~~~~~~~~~~~~~~~~~~~~~~ 157 (397)
.........+++++|.. ++++.+++++.+|++.|. +++++++|++++
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~-----~~~i~~~~~l~~a~~~m~~~~i~~lpVVd~~-------------------- 123 (145)
T d1o50a3 69 PKEELIRSSMKRLIAKNASEIMLD-----PVYVHMDTPLEEALKLMIDNNIQEMPVVDEK-------------------- 123 (145)
T ss_dssp C-------CCCCCSSCBHHHHCBC-----CCCBCTTSBHHHHHHHHHHHTCSEEEEECTT--------------------
T ss_pred chhHHHHhhhhhccccCHHHHcCC-----CEEEcCCCCHHHHHHHHHHcCceEEEEEeCC--------------------
Confidence 01112234668888743 578999999999999999 899999998532
Q ss_pred CCceeeeecHHHHHHHHHhc
Q 016003 158 NGREFCWLTQEDIIRFILSS 177 (397)
Q Consensus 158 ~~~~~~IITq~DIi~~l~~~ 177 (397)
|+++|+||++||++++++.
T Consensus 124 -g~i~Gvit~~dil~~l~~~ 142 (145)
T d1o50a3 124 -GEIVGDLNSLEILLALWKG 142 (145)
T ss_dssp -SCEEEEEEHHHHHHHHHHS
T ss_pred -CeEEEEEEHHHHHHHHHhc
Confidence 5789999999999999865
|
| >d1pvma4 d.37.1.1 (A:1-142) Hypothetical protein Ta0289 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CBS-domain pair superfamily: CBS-domain pair family: CBS-domain pair domain: Hypothetical protein Ta0289 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.66 E-value=1.4e-16 Score=135.43 Aligned_cols=124 Identities=15% Similarity=0.208 Sum_probs=106.2
Q ss_pred chhhhhhcCCCCeEEEeCChhHHHHHHHHhhCCCceEEEEccCCCCCCCCCCCCCCCeEEEEEehhHHHHHHhhcCCCCC
Q 016003 8 DEVSDLCLGKPALRALSISAAIADALSALKNSDESFISVWDCNCCSNHRKLGDACECQCVGKVCMVDVICYLCKDSNSLS 87 (397)
Q Consensus 8 ~~v~dl~~~k~~li~v~~~~tv~~Al~~L~~~~I~s~PV~d~~~~~~~~~~~~~~~~~~vGiv~~~Dil~~l~~~~~l~~ 87 (397)
++|+|+| +++++++++++|+.+|++.|.++++..+||+|.+ ++++|+++..|+++.+.....
T Consensus 3 m~v~dim--~~~~~~v~~~~tl~~a~~~m~~~~~~~~~V~d~~-------------~~~~Giit~~di~~~~~~~~~--- 64 (142)
T d1pvma4 3 MRVEKIM--NSNFKTVNWNTTVFDAVKIMNENHLYGLVVKDDN-------------GNDVGLLSERSIIKRFIPRNK--- 64 (142)
T ss_dssp CBGGGTS--BTTCCEEETTCBHHHHHHHHHHHTCCEEEEECTT-------------SCEEEEEEHHHHHHHTGGGCC---
T ss_pred EEHHHhC--CCCCcEECCcCcHHHHHHHHHHCCCceEeeeccC-------------CcccceEEeechhhhhhhhcc---
Confidence 5799999 4678999999999999999999999999999963 689999999999987754221
Q ss_pred hhhhhcCChhhhccCCCCCceEEeCCCCCHHHHHHHHh-cCCceEEEeccCcchhhhhhhcccccccccCCCCceeeeec
Q 016003 88 PSLALKQPVSVLLPQLLPPLVMHVEPSCSLLEAMDLML-GGAQNLVVPIKNRLSIKRKQQQKLSSSSLTNHNGREFCWLT 166 (397)
Q Consensus 88 ~~~~~~~~V~~lm~~~~~~~~~~V~~~~sL~~al~~m~-~g~~r~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IIT 166 (397)
.....+++++|.+. ++++.++++|.+|++.|. +++++++|++++ |+++|+||
T Consensus 65 --~~~~~~v~~im~~~----~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~~---------------------g~l~Giit 117 (142)
T d1pvma4 65 --KPDEVPIRLVMRKP----IPKVKSDYDVKDVAAYLSENGLERCAVVDDP---------------------GRVVGIVT 117 (142)
T ss_dssp --CGGGSBGGGTSBSS----CCEEETTCBHHHHHHHHHHHTCSEEEEECTT---------------------CCEEEEEE
T ss_pred --cccccccccccccc----cccccchhhHHHHHHHHHHcCCcEEEEEecC---------------------CEEEEEEE
Confidence 23457899999765 899999999999999999 799999998632 46899999
Q ss_pred HHHHHHHHHh
Q 016003 167 QEDIIRFILS 176 (397)
Q Consensus 167 q~DIi~~l~~ 176 (397)
+.||++++.+
T Consensus 118 ~~Dil~~l~~ 127 (142)
T d1pvma4 118 LTDLSRYLSR 127 (142)
T ss_dssp HHHHTTTSCH
T ss_pred HHHHHHHHhh
Confidence 9999998754
|
| >d2nyca1 d.37.1.1 (A:181-320) Nuclear protein SNF4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CBS-domain pair superfamily: CBS-domain pair family: CBS-domain pair domain: Nuclear protein SNF4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.65 E-value=3.6e-16 Score=132.09 Aligned_cols=132 Identities=19% Similarity=0.176 Sum_probs=100.9
Q ss_pred cccchhhhh-hcCCCCeEEEeCChhHHHHHHHHhhCCCceEEEEccCCCCCCCCCCCCCCCeEEEEEehhHHHHHHhhcC
Q 016003 5 LLADEVSDL-CLGKPALRALSISAAIADALSALKNSDESFISVWDCNCCSNHRKLGDACECQCVGKVCMVDVICYLCKDS 83 (397)
Q Consensus 5 ~~~~~v~dl-~~~k~~li~v~~~~tv~~Al~~L~~~~I~s~PV~d~~~~~~~~~~~~~~~~~~vGiv~~~Dil~~l~~~~ 83 (397)
|...+++|+ +....+++++++++|+.+|+++|.+++++++||+|. +++++|+++..|++.++....
T Consensus 3 ~~~~~i~~l~~~~~~~v~tv~~~~~v~~a~~~m~~~~~~~ipVvd~-------------~~~~vG~it~~Di~~~~~~~~ 69 (140)
T d2nyca1 3 FLKIPIGDLNIITQDNMKSCQMTTPVIDVIQMLTQGRVSSVPIIDE-------------NGYLINVYEAYDVLGLIKGGI 69 (140)
T ss_dssp GGGSBGGGSSCCBCSSCCCBCTTSBHHHHHHHHHHHTCSEEEEECT-------------TCBEEEEEEHHHHHHHHHTC-
T ss_pred cccCcHHHhCCccCCCCEEEcCcCcHHHHHHHHHHcCCcEEEEEec-------------CCeEcceehhhHHHHHHhhcc
Confidence 345778888 344578999999999999999999999999999996 368999999999999987532
Q ss_pred CCCChhhhhcCChhhhccC--CCCCceEEeCCCCCHHHHHHHHh-cCCceEEEeccCcchhhhhhhcccccccccCCCCc
Q 016003 84 NSLSPSLALKQPVSVLLPQ--LLPPLVMHVEPSCSLLEAMDLML-GGAQNLVVPIKNRLSIKRKQQQKLSSSSLTNHNGR 160 (397)
Q Consensus 84 ~l~~~~~~~~~~V~~lm~~--~~~~~~~~V~~~~sL~~al~~m~-~g~~r~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (397)
. ......+...+.. ....+++++.++++|.+|++.|. +++++++|++++ ++
T Consensus 70 ~-----~~~~~~~~~~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~VVd~~---------------------~~ 123 (140)
T d2nyca1 70 Y-----NDLSLSVGEALMRRSDDFEGVYTCTKNDKLSTIMDNIRKARVHRFFVVDDV---------------------GR 123 (140)
T ss_dssp --------CCSBHHHHHHHCC------CEECTTSBHHHHHHHHHHHTCSEEEEECTT---------------------SB
T ss_pred c-----cccccchhhhhhhhhhcccccEEECCCCcHHHHHHHHHhcCeeEEEEEeCC---------------------Ce
Confidence 1 1222333333311 11244789999999999999999 799999998643 46
Q ss_pred eeeeecHHHHHHHHH
Q 016003 161 EFCWLTQEDIIRFIL 175 (397)
Q Consensus 161 ~~~IITq~DIi~~l~ 175 (397)
.+|+||++||++|+.
T Consensus 124 l~GiIt~~Dii~~l~ 138 (140)
T d2nyca1 124 LVGVLTLSDILKYIL 138 (140)
T ss_dssp EEEEEEHHHHHHHHH
T ss_pred EEEEEEHHHHHHHHh
Confidence 889999999999985
|
| >d2v8qe1 d.37.1.1 (E:182-326) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CBS-domain pair superfamily: CBS-domain pair family: CBS-domain pair domain: 5'-AMP-activated protein kinase subunit gamma-1, AMPKg species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.65 E-value=3.8e-16 Score=132.53 Aligned_cols=133 Identities=16% Similarity=0.161 Sum_probs=106.9
Q ss_pred cccchhhhhhcCC-CCeEEEeCChhHHHHHHHHhhCCCceEEEEccCCCCCCCCCCCCCCCeEEEEEehhHHHHHHhhcC
Q 016003 5 LLADEVSDLCLGK-PALRALSISAAIADALSALKNSDESFISVWDCNCCSNHRKLGDACECQCVGKVCMVDVICYLCKDS 83 (397)
Q Consensus 5 ~~~~~v~dl~~~k-~~li~v~~~~tv~~Al~~L~~~~I~s~PV~d~~~~~~~~~~~~~~~~~~vGiv~~~Dil~~l~~~~ 83 (397)
|.+.+++|+..++ ++++++++++|+.+|+++|.+++++++||+|.+ ++++|+++..|++.++....
T Consensus 6 f~~~~l~~l~i~~~~~v~~v~~~~tv~eal~~m~~~~~~~lpVvd~~-------------~~~~Gvit~~di~~~l~~~~ 72 (145)
T d2v8qe1 6 FMSKSLEELQIGTYANIAMVRTTTPVYVALGIFVQHRVSALPVVDEK-------------GRVVDIYSKFDVINLAAEKT 72 (145)
T ss_dssp GGGSBHHHHTCSBCSSCCCEETTCBHHHHHHHHHHHCCSEEEEECTT-------------SBEEEEEEGGGTGGGGGSSC
T ss_pred HhhCCHHHHcCCCCCCceEEcCcCcHHHHHHHHHHcCCCcccccccC-------------CceEEEEEcchhhhhhhccc
Confidence 3466899998764 579999999999999999999999999999963 68999999999998887532
Q ss_pred CCCChhhhhcCChhhhccC--CCCCceEEeCCCCCHHHHHHHHh-cCCceEEEeccCcchhhhhhhcccccccccCCCCc
Q 016003 84 NSLSPSLALKQPVSVLLPQ--LLPPLVMHVEPSCSLLEAMDLML-GGAQNLVVPIKNRLSIKRKQQQKLSSSSLTNHNGR 160 (397)
Q Consensus 84 ~l~~~~~~~~~~V~~lm~~--~~~~~~~~V~~~~sL~~al~~m~-~g~~r~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (397)
. ...+.++...+.. ....+++++.+++++.++++.|. +++++++|++++ ++
T Consensus 73 ~-----~~~~~~v~~~~~~~~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~---------------------g~ 126 (145)
T d2v8qe1 73 Y-----NNLDVSVTKALQHRSHYFEGVLKCYLHETLEAIINRLVEAEVHRLVVVDEH---------------------DV 126 (145)
T ss_dssp C-----CCCSSBHHHHGGGCCSCCCSCCEECTTSBHHHHHHHHHHHTCSEEEEECTT---------------------SB
T ss_pred c-----cchhhhhhhccchhhhccCCCeEECCCCcHHHHHHHHHHcCceEEEEEccC---------------------CE
Confidence 1 1234455554421 12345889999999999999999 899999998532 46
Q ss_pred eeeeecHHHHHHHHHh
Q 016003 161 EFCWLTQEDIIRFILS 176 (397)
Q Consensus 161 ~~~IITq~DIi~~l~~ 176 (397)
++|+||++||++++..
T Consensus 127 l~GiVt~~dii~~lv~ 142 (145)
T d2v8qe1 127 VKGIVSLSDILQALVL 142 (145)
T ss_dssp EEEEEEHHHHHHHHHS
T ss_pred EEEEEEHHHHHHHHHh
Confidence 8899999999999974
|
| >d1pbja3 d.37.1.1 (A:2-121) Hypothetical protein MTH1622 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CBS-domain pair superfamily: CBS-domain pair family: CBS-domain pair domain: Hypothetical protein MTH1622 species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=99.64 E-value=7.5e-16 Score=126.96 Aligned_cols=117 Identities=19% Similarity=0.241 Sum_probs=101.8
Q ss_pred hhhhhhcCCCCeEEEeCChhHHHHHHHHhhCCCceEEEEccCCCCCCCCCCCCCCCeEEEEEehhHHHHHHhhcCCCCCh
Q 016003 9 EVSDLCLGKPALRALSISAAIADALSALKNSDESFISVWDCNCCSNHRKLGDACECQCVGKVCMVDVICYLCKDSNSLSP 88 (397)
Q Consensus 9 ~v~dl~~~k~~li~v~~~~tv~~Al~~L~~~~I~s~PV~d~~~~~~~~~~~~~~~~~~vGiv~~~Dil~~l~~~~~l~~~ 88 (397)
+|+|+|. ++++++++++|+.+|++.|.+++++.+||.+. ++++|+++..||++++..+..
T Consensus 1 kV~diM~--~~~~~v~~~~sl~ea~~~~~~~~~~~~~V~~~--------------~~~~Gvit~~Di~~~l~~~~~---- 60 (120)
T d1pbja3 1 RVEDVMV--TDVDTIDITASLEDVLRNYVENAKGSSVVVKE--------------GVRVGIVTTWDVLEAIAEGDD---- 60 (120)
T ss_dssp CHHHHCB--CSCCEEETTCBHHHHHHHHHHHCCCEEEEEET--------------TEEEEEEEHHHHHHHHHHTCC----
T ss_pred ChHHhCC--CCCeEECCcCcHHHHHHHHHHcCceEEEEEeC--------------CcEEEEEEeeecccccccccc----
Confidence 4889994 68899999999999999999999999999984 589999999999999887432
Q ss_pred hhhhcCChhhhccCCCCCceEEeCCCCCHHHHHHHHh-cCCceEEEeccCcchhhhhhhcccccccccCCCCceeeeecH
Q 016003 89 SLALKQPVSVLLPQLLPPLVMHVEPSCSLLEAMDLML-GGAQNLVVPIKNRLSIKRKQQQKLSSSSLTNHNGREFCWLTQ 167 (397)
Q Consensus 89 ~~~~~~~V~~lm~~~~~~~~~~V~~~~sL~~al~~m~-~g~~r~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IITq 167 (397)
..+.++.++|... ++++++++++.+|++.|. +++++++|.++ ++++|+||+
T Consensus 61 --~~~~~v~~~m~~~----~~~v~~~~~l~~a~~~m~~~~~~~l~V~~~----------------------~~l~Givt~ 112 (120)
T d1pbja3 61 --LAEVKVWEVMERD----LVTISPRATIKEAAEKMVKNVVWRLLVEED----------------------DEIIGVISA 112 (120)
T ss_dssp --TTTSBHHHHCBCG----GGEECTTSCHHHHHHHHHHHTCSEEEEEET----------------------TEEEEEEEH
T ss_pred --ccceeEeeecccc----cccccchhHHHHHHHHHHHcCCeEEEEEEC----------------------CEEEEEEEH
Confidence 2357899999765 899999999999999999 79999988642 367899999
Q ss_pred HHHHHH
Q 016003 168 EDIIRF 173 (397)
Q Consensus 168 ~DIi~~ 173 (397)
.||++.
T Consensus 113 ~Dil~A 118 (120)
T d1pbja3 113 TDILRA 118 (120)
T ss_dssp HHHHHH
T ss_pred HHHHhc
Confidence 999975
|
| >d2ooxe2 d.37.1.1 (E:182-334) Uncharacterized protein C1556.08c {Schizosaccharomyces pombe [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CBS-domain pair superfamily: CBS-domain pair family: CBS-domain pair domain: Uncharacterized protein C1556.08c species: Schizosaccharomyces pombe [TaxId: 4896]
Probab=99.63 E-value=2e-15 Score=129.51 Aligned_cols=128 Identities=18% Similarity=0.173 Sum_probs=106.3
Q ss_pred hhhhhcCC-CCeEEEeCChhHHHHHHHHhhCCCceEEEEccCCCCCCCCCCCCCCCeEEEEEehhHHHHHHhhcCCCCCh
Q 016003 10 VSDLCLGK-PALRALSISAAIADALSALKNSDESFISVWDCNCCSNHRKLGDACECQCVGKVCMVDVICYLCKDSNSLSP 88 (397)
Q Consensus 10 v~dl~~~k-~~li~v~~~~tv~~Al~~L~~~~I~s~PV~d~~~~~~~~~~~~~~~~~~vGiv~~~Dil~~l~~~~~l~~~ 88 (397)
+++++.++ .+++++.+++|+.+|+++|.+++++++||+|. +++++|+++..||+.++....
T Consensus 3 l~~~~ig~~~~vv~v~~~~~v~~a~~~m~~~~~~~lpVvd~-------------~~~~vG~it~~Dl~~~~~~~~----- 64 (153)
T d2ooxe2 3 LNQMTIGTWSNLATASMETKVYDVIKMLAEKNISAVPIVNS-------------EGTLLNVYESVDVMHLIQDGD----- 64 (153)
T ss_dssp GGGTCCSBCSSCCCBCTTSBHHHHHHHHHHTTCSEEEEECG-------------GGBEEEEEEHHHHHHHHGGGC-----
T ss_pred HHHcCCCCCCCCeEEeCcCcHHHHHHHHHHcCcceEeeecc-------------cceEEEEEEeeeeeehhcccc-----
Confidence 56777664 47999999999999999999999999999996 368999999999999987532
Q ss_pred hhhhcCChhhhccCC--CCCceEEeCCCCCHHHHHHHHh-cCCceEEEeccCcchhhhhhhcccccccccCCCCceeeee
Q 016003 89 SLALKQPVSVLLPQL--LPPLVMHVEPSCSLLEAMDLML-GGAQNLVVPIKNRLSIKRKQQQKLSSSSLTNHNGREFCWL 165 (397)
Q Consensus 89 ~~~~~~~V~~lm~~~--~~~~~~~V~~~~sL~~al~~m~-~g~~r~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~II 165 (397)
......+++++|... ...+++++.++++|.++++.|. +++++++|++++ ++.+|+|
T Consensus 65 ~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~---------------------~~lvGiv 123 (153)
T d2ooxe2 65 YSNLDLSVGEALLKRPANFDGVHTCRATDRLDGIFDAIKHSRVHRLFVVDEN---------------------LKLEGIL 123 (153)
T ss_dssp GGGGGSBHHHHHHTSCCCSSCCCEECTTCBHHHHHHHHHHSCCSEEEEECTT---------------------CBEEEEE
T ss_pred ccccccchhhheeeeecccCCCeEECCCCcHHHHHHhhhhceeeEEEEEcCC---------------------CEEEEEE
Confidence 123456788887432 1345789999999999999999 899999998632 4688999
Q ss_pred cHHHHHHHHHh
Q 016003 166 TQEDIIRFILS 176 (397)
Q Consensus 166 Tq~DIi~~l~~ 176 (397)
|+.||++|+..
T Consensus 124 T~~Dil~~~~~ 134 (153)
T d2ooxe2 124 SLADILNYIIY 134 (153)
T ss_dssp EHHHHHHHHHS
T ss_pred EHHHHHHHHHc
Confidence 99999999874
|
| >d3ddja2 d.37.1.1 (A:1-135) Uncharacterized protein SSO3205 {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CBS-domain pair superfamily: CBS-domain pair family: CBS-domain pair domain: Uncharacterized protein SSO3205 species: Sulfolobus solfataricus [TaxId: 2287]
Probab=99.59 E-value=9.4e-16 Score=128.39 Aligned_cols=126 Identities=13% Similarity=0.105 Sum_probs=105.0
Q ss_pred chhhhhhcCCCCeEEEeCChhHHHHHHHHhhCCCceEEEEccCCCCCCCCCCCCCCCeEEEEEehhHHHHHHhhcCCCCC
Q 016003 8 DEVSDLCLGKPALRALSISAAIADALSALKNSDESFISVWDCNCCSNHRKLGDACECQCVGKVCMVDVICYLCKDSNSLS 87 (397)
Q Consensus 8 ~~v~dl~~~k~~li~v~~~~tv~~Al~~L~~~~I~s~PV~d~~~~~~~~~~~~~~~~~~vGiv~~~Dil~~l~~~~~l~~ 87 (397)
++|+|+|.. +++++++++|+.+|++.|.+++++++||+|. +++|+++..|++.++........
T Consensus 1 m~V~~lM~~--~~~~v~~~~tl~~a~~~m~~~~~~~l~V~d~---------------~lvg~~~~~~~~~~~~~~~~~~~ 63 (135)
T d3ddja2 1 MNIETLMIK--NPPILSKEDRLGSAFKKINEGGIGRIIVANE---------------KIEGLLTTRDLLSTVESYCKDSC 63 (135)
T ss_dssp SSGGGTCEE--SCCEECTTSBHHHHHHHTTGGGCCEEEEESS---------------SEEEEEEHHHHHGGGTTCC---C
T ss_pred CEeeEEeeC--CCeEECCCCcHHHHHHHHHHhCCeEEEEEec---------------ceeceeeccchhhhhccccccch
Confidence 579999964 5678999999999999999999999999984 69999999999998865322111
Q ss_pred ----hhhhhcCChhhhccCCCCCceEEeCCCCCHHHHHHHHh-cCCceEEEeccCcchhhhhhhcccccccccCCCCcee
Q 016003 88 ----PSLALKQPVSVLLPQLLPPLVMHVEPSCSLLEAMDLML-GGAQNLVVPIKNRLSIKRKQQQKLSSSSLTNHNGREF 162 (397)
Q Consensus 88 ----~~~~~~~~V~~lm~~~~~~~~~~V~~~~sL~~al~~m~-~g~~r~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (397)
.....+.+++++|... +.++.+++++.+|++.|. +++++++|++++ |+.+
T Consensus 64 ~~~~~~~~~~~~v~~im~~~----~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~---------------------g~lv 118 (135)
T d3ddja2 64 SQGDLYHISTTPIIDYMTPN----PVTVYNTSDEFTAINIMVTRNFGSLPVVDIN---------------------DKPV 118 (135)
T ss_dssp CHHHHHHHHTSBGGGTSEES----CCCEETTSCHHHHHHHHHHHTCSEEEEECTT---------------------SCEE
T ss_pred hhhhccccccCCHHHHhCCc----cceEEeccccchhhhhhhhcceeEEEEEeCC---------------------CEEE
Confidence 1223568999999765 889999999999999999 799999998632 5789
Q ss_pred eeecHHHHHHHHH
Q 016003 163 CWLTQEDIIRFIL 175 (397)
Q Consensus 163 ~IITq~DIi~~l~ 175 (397)
|+||++||++++.
T Consensus 119 Giit~~Dil~~~~ 131 (135)
T d3ddja2 119 GIVTEREFLLLYK 131 (135)
T ss_dssp EEEEHHHHGGGGG
T ss_pred EEEEHHHHHHHHH
Confidence 9999999999875
|
| >d2d4za3 d.37.1.1 (A:527-606,A:691-770) Chloride channel protein, CBS tandem {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CBS-domain pair superfamily: CBS-domain pair family: CBS-domain pair domain: Chloride channel protein, CBS tandem species: Marbled electric ray (Torpedo marmorata) [TaxId: 7788]
Probab=99.58 E-value=2.1e-15 Score=129.19 Aligned_cols=129 Identities=15% Similarity=0.130 Sum_probs=102.8
Q ss_pred cchhhhhhcCCCCeEEEeCChhHHHHHHHHhhCCCceEEEEccCCCCCCCCCCCCCCCeEEEEEehhHHHHHHhhc---C
Q 016003 7 ADEVSDLCLGKPALRALSISAAIADALSALKNSDESFISVWDCNCCSNHRKLGDACECQCVGKVCMVDVICYLCKD---S 83 (397)
Q Consensus 7 ~~~v~dl~~~k~~li~v~~~~tv~~Al~~L~~~~I~s~PV~d~~~~~~~~~~~~~~~~~~vGiv~~~Dil~~l~~~---~ 83 (397)
+.+|+|+|. ++++++++++|+.+|+++|.++++.++||+|... ++.++|+++..|++.++... .
T Consensus 10 ~~~V~diM~--~~~~~v~~~~tv~e~~~~l~~~~~~~~PVvd~~~-----------~~~lvg~is~~dl~~~l~~~~~~~ 76 (160)
T d2d4za3 10 NIQVGDIMV--RDVTSIASTSTYGDLLHVLRQTKLKFFPFVDTPD-----------TNTLLGSIDRTEVEGLLQRRISAY 76 (160)
T ss_dssp SCBTTSSSB--SSCCCEETTCBHHHHHHHHHHCCCSEEEEESCTT-----------TCBEEEEEEHHHHHHHHHHHHHTT
T ss_pred ceEHHHhcC--CCCeEECCCCcHHHHHHHHHhcCCCccccccccc-----------cccccccchHHHHHHHHhhccccc
Confidence 668999995 6899999999999999999999999999999642 36899999999999988641 0
Q ss_pred C---CC---Ch----------hhhhcCChhhhccCCCCCceEEeCCCCCHHHHHHHHh-cCCceEEEeccCcchhhhhhh
Q 016003 84 N---SL---SP----------SLALKQPVSVLLPQLLPPLVMHVEPSCSLLEAMDLML-GGAQNLVVPIKNRLSIKRKQQ 146 (397)
Q Consensus 84 ~---l~---~~----------~~~~~~~V~~lm~~~~~~~~~~V~~~~sL~~al~~m~-~g~~r~~V~~~~~~~~~~~~~ 146 (397)
. .. .. .......+.++|... ++++.++++|.+|+++|. +|+++++|.++
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~tv~~~~~l~~~~~~m~~~~v~~l~V~d~---------- 142 (160)
T d2d4za3 77 RRQPFEEMLTLEEIYRWEQREKNVVVNFETCRIDQS----PFQLVEGTSLQKTHTLFSLLGLDRAYVTSM---------- 142 (160)
T ss_dssp SSSCCCSCCBHHHHHHHHHHHTTCBCCTTSSCEECC----SCCBCTTCBHHHHHHHHHHHTCSEEEEEET----------
T ss_pred cccchhhccccchhhhhhhhhcccccceeeecccCC----CEEEcCCCCHHHHHHHHHHcCCeEEEEEEC----------
Confidence 0 00 00 001123455666554 889999999999999999 79999998742
Q ss_pred cccccccccCCCCceeeeecHHHHHHHH
Q 016003 147 QKLSSSSLTNHNGREFCWLTQEDIIRFI 174 (397)
Q Consensus 147 ~~~~~~~~~~~~~~~~~IITq~DIi~~l 174 (397)
|+++||||++||++.|
T Consensus 143 ------------g~lvGiIt~~Di~k~I 158 (160)
T d2d4za3 143 ------------GKLVGVVALAEIQAAI 158 (160)
T ss_dssp ------------TEEEEEEEHHHHHHHH
T ss_pred ------------CEEEEEEEHHHHHHHh
Confidence 4678999999999986
|
| >d2j9la1 d.37.1.1 (A:578-746) Chloride channel protein 5, ClC-5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CBS-domain pair superfamily: CBS-domain pair family: CBS-domain pair domain: Chloride channel protein 5, ClC-5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.58 E-value=7.1e-15 Score=127.93 Aligned_cols=135 Identities=16% Similarity=0.141 Sum_probs=104.6
Q ss_pred cchhhhhhcCC---CC-eEEEeCChhHHHHHHHHhhCCCceEEEEccCCCCCCCCCCCCCCCeEEEEEehhHHHHHHhhc
Q 016003 7 ADEVSDLCLGK---PA-LRALSISAAIADALSALKNSDESFISVWDCNCCSNHRKLGDACECQCVGKVCMVDVICYLCKD 82 (397)
Q Consensus 7 ~~~v~dl~~~k---~~-li~v~~~~tv~~Al~~L~~~~I~s~PV~d~~~~~~~~~~~~~~~~~~vGiv~~~Dil~~l~~~ 82 (397)
...++|+|... +. .+.+.++.|+.+|+++|.+++++++||++++. +++++|+|+..||+.++...
T Consensus 2 ~~~a~DiM~p~~~~~~~~v~~~~~~tv~~a~~ll~~~~~~~~PVV~~~~-----------~~~lvG~is~~dl~~~l~~~ 70 (169)
T d2j9la1 2 KTLAMDVMKPRRNDPLLTVLTQDSMTVEDVETIISETTYSGFPVVVSRE-----------SQRLVGFVLRRDLIISIENA 70 (169)
T ss_dssp CCBHHHHSBSCTTSCCCCCEESSCEEHHHHHHHHHHCCCSEEEEESCTT-----------TCBEEEEEEHHHHHHHHHHH
T ss_pred ccchhhhcCcCCCCCceEEECCCcCCHHHHHHHHHHcCCCceeeeecCC-----------CCeEEEEEEhHHHHHHHhcc
Confidence 35688999653 23 35567889999999999999999999997543 47899999999999988631
Q ss_pred ----CCCC--------------ChhhhhcCChhhhccCCCCCceEEeCCCCCHHHHHHHHh-cCCceEEEeccCcchhhh
Q 016003 83 ----SNSL--------------SPSLALKQPVSVLLPQLLPPLVMHVEPSCSLLEAMDLML-GGAQNLVVPIKNRLSIKR 143 (397)
Q Consensus 83 ----~~l~--------------~~~~~~~~~V~~lm~~~~~~~~~~V~~~~sL~~al~~m~-~g~~r~~V~~~~~~~~~~ 143 (397)
.... ........+|+++|... +.++.++++|.+++++|. +|+++++|.++
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~----~~tv~~~~~l~~v~~~~~~~~~~~l~V~d~------- 139 (169)
T d2j9la1 71 RKKQDGVVSTSIIYFTEHSPPLPPYTPPTLKLRNILDLS----PFTVTDLTPMEIVVDIFRKLGLRQCLVTHN------- 139 (169)
T ss_dssp HTSCSCCCTTCEEECSSSCCCCCTTCCCCEECGGGEESS----CCEEETTSBHHHHHHHHHHHTCSEEEEEET-------
T ss_pred cccccccccchhhhhcccchhhhhccccccchhhhccCC----CEEECCCCcHHHHHHHHHhcCceEEEEEEC-------
Confidence 1000 01122345689999765 789999999999999998 79999987642
Q ss_pred hhhcccccccccCCCCceeeeecHHHHHHHHHhcc
Q 016003 144 KQQQKLSSSSLTNHNGREFCWLTQEDIIRFILSSI 178 (397)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~IITq~DIi~~l~~~~ 178 (397)
|+++||||+.||++++.+..
T Consensus 140 ---------------g~lvGiIt~~Dil~~l~~~~ 159 (169)
T d2j9la1 140 ---------------GRLLGIITKKDVLKHIAQMA 159 (169)
T ss_dssp ---------------TEEEEEEEHHHHHHHHHHHC
T ss_pred ---------------CEEEEEEEHHHHHHHHHHHh
Confidence 46789999999999998753
|
| >d2yzqa2 d.37.1.1 (A:1-122) Uncharacterized protein PH1780 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CBS-domain pair superfamily: CBS-domain pair family: CBS-domain pair domain: Uncharacterized protein PH1780 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=99.58 E-value=8.9e-16 Score=126.94 Aligned_cols=117 Identities=22% Similarity=0.217 Sum_probs=83.2
Q ss_pred chhhhhhcCCCCeEEEeCChhHHHHHHHHhhCCCceEEEEccCCCCCCCCCCCCCCCeEEEEEehhHHHHHHhhcCCCCC
Q 016003 8 DEVSDLCLGKPALRALSISAAIADALSALKNSDESFISVWDCNCCSNHRKLGDACECQCVGKVCMVDVICYLCKDSNSLS 87 (397)
Q Consensus 8 ~~v~dl~~~k~~li~v~~~~tv~~Al~~L~~~~I~s~PV~d~~~~~~~~~~~~~~~~~~vGiv~~~Dil~~l~~~~~l~~ 87 (397)
++|+|+|. ++++++++++|+.+|+++|.++++.++||+|. +|+|+|+|+..|++....
T Consensus 1 m~v~diM~--~~~v~v~~~~~v~~a~~~m~~~~~~~~~Vvd~-------------~~~~~G~it~~dl~~~~~------- 58 (122)
T d2yzqa2 1 MRVKTIMT--QNPVTITLPATRNYALELFKKYKVRSFPVVNK-------------EGKLVGIISVKRILVNPD------- 58 (122)
T ss_dssp CBHHHHSE--ESCCCEESSCC------------CCEEEEECT-------------TCCEEEEEESSCC------------
T ss_pred CCcccccC--CCCEEECCcCcHHHHHHHHHHcCCcEEEEEec-------------cccchhhhhcchhhhhhc-------
Confidence 57899995 56889999999999999999999999999996 368999999999986422
Q ss_pred hhhhhcCChhhhccCCCCCceEEeCCCCCHHHHHHHHh-cCCceEEEeccCcchhhhhhhcccccccccCCCCceeeeec
Q 016003 88 PSLALKQPVSVLLPQLLPPLVMHVEPSCSLLEAMDLML-GGAQNLVVPIKNRLSIKRKQQQKLSSSSLTNHNGREFCWLT 166 (397)
Q Consensus 88 ~~~~~~~~V~~lm~~~~~~~~~~V~~~~sL~~al~~m~-~g~~r~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IIT 166 (397)
+.++.++|.++ ++++.+++++.+|++.|. +++++++|++++ ++.+|+||
T Consensus 59 -----~~~~~~~~~~~----~~~v~~~~~l~~~~~~~~~~~~~~lpVvd~~---------------------~~liGiit 108 (122)
T d2yzqa2 59 -----EEQLAMLVKRD----VPVVKENDTLKKAAKLMLEYDYRRVVVVDSK---------------------GKPVGILT 108 (122)
T ss_dssp ----------CCCBSC----CCEEETTSBHHHHHHHHHHHTCSEEEEECTT---------------------SCEEEEEE
T ss_pred -----ccchhhccccc----eeecchhhHHHHHHHHHHHcCcEEEEEEeCC---------------------CEEEEEEE
Confidence 34678888765 889999999999999999 799999998632 46889999
Q ss_pred HHHHHHHHHh
Q 016003 167 QEDIIRFILS 176 (397)
Q Consensus 167 q~DIi~~l~~ 176 (397)
..||++.+.+
T Consensus 109 ~~dil~~~~~ 118 (122)
T d2yzqa2 109 VGDIIRRYFA 118 (122)
T ss_dssp HHHHHHHTTT
T ss_pred HHHHHHHHHh
Confidence 9999987654
|
| >d2riha1 d.37.1.1 (A:2-132) Uncharacterized protein PAE2072 {Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CBS-domain pair superfamily: CBS-domain pair family: CBS-domain pair domain: Uncharacterized protein PAE2072 species: Pyrobaculum aerophilum [TaxId: 13773]
Probab=99.57 E-value=6.5e-15 Score=122.62 Aligned_cols=122 Identities=17% Similarity=0.104 Sum_probs=99.0
Q ss_pred chhhhhhcCCCCeEEEeCChhHHHHHHHHhhCCCceEEEEccCCCCCCCCCCCCCCCeEEEEEehhHHHHHHhhcCCCCC
Q 016003 8 DEVSDLCLGKPALRALSISAAIADALSALKNSDESFISVWDCNCCSNHRKLGDACECQCVGKVCMVDVICYLCKDSNSLS 87 (397)
Q Consensus 8 ~~v~dl~~~k~~li~v~~~~tv~~Al~~L~~~~I~s~PV~d~~~~~~~~~~~~~~~~~~vGiv~~~Dil~~l~~~~~l~~ 87 (397)
.+|+|+| +++++++++++|+.+|++.|.+++++++||++.+. +++++|+++..|++.++......
T Consensus 1 ~~V~dim--~~~~v~v~~~~tl~ea~~~m~~~~~~~~~Vv~~d~-----------~~~~iGi~~~~dl~~~~~~~~~~-- 65 (131)
T d2riha1 1 IRTSELL--KRPPVSLPETATIREVATELAKNRVGLAVLTARDN-----------PKRPVAVVSERDILRAVAQRLDL-- 65 (131)
T ss_dssp CBGGGGC--CSCCEEEETTCBHHHHHHHHHHHTCSEEEEEETTE-----------EEEEEEEEEHHHHHHHHHTTCCT--
T ss_pred CCHHHhc--cCCCEEECCCCcHHHHHHHHHHhCCCcEEEEEEcC-----------CCEEEEEEeeecccccccccccc--
Confidence 4789999 46789999999999999999999999999996432 47899999999999988763221
Q ss_pred hhhhhcCChhhhccCCCCCceEEeCCCCCHHHHHHHHh-cCCceEEEeccCcchhhhhhhcccccccccCCCCceeeeec
Q 016003 88 PSLALKQPVSVLLPQLLPPLVMHVEPSCSLLEAMDLML-GGAQNLVVPIKNRLSIKRKQQQKLSSSSLTNHNGREFCWLT 166 (397)
Q Consensus 88 ~~~~~~~~V~~lm~~~~~~~~~~V~~~~sL~~al~~m~-~g~~r~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IIT 166 (397)
...+...+ . +++++.+++++.+|++.|. +++++++|++++ |+.+|+||
T Consensus 66 -----~~~~~~~~-~----~~~~v~~~~~~~~a~~~m~~~~i~~lpVvd~~---------------------g~l~Giit 114 (131)
T d2riha1 66 -----DGPAMPIA-N----SPITVLDTDPVHVAAEKMRRHNIRHVVVVNKN---------------------GELVGVLS 114 (131)
T ss_dssp -----TSBSGGGC-B----CCCEEETTSBHHHHHHHHHHHTCSEEEEECTT---------------------SCEEEEEE
T ss_pred -----cccccccc-c----cceeEeeecchHHHHHHHHHCCeEEEEEEcCC---------------------CeEEEEEE
Confidence 12233333 2 2678999999999999999 799999998633 56889999
Q ss_pred HHHHHHHHH
Q 016003 167 QEDIIRFIL 175 (397)
Q Consensus 167 q~DIi~~l~ 175 (397)
+.||++++.
T Consensus 115 ~~Dll~~~~ 123 (131)
T d2riha1 115 IRDLCFERA 123 (131)
T ss_dssp HHHHHSCHH
T ss_pred HHHHHHHHH
Confidence 999998765
|
| >d2ouxa2 d.37.1.1 (A:136-262) Magnesium transporter MgtE {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CBS-domain pair superfamily: CBS-domain pair family: CBS-domain pair domain: Magnesium transporter MgtE species: Enterococcus faecalis [TaxId: 1351]
Probab=99.56 E-value=6.4e-15 Score=122.66 Aligned_cols=117 Identities=17% Similarity=0.176 Sum_probs=101.1
Q ss_pred hhhhhhcCCCCeEEEeCChhHHHHHHHHhhC-----CCceEEEEccCCCCCCCCCCCCCCCeEEEEEehhHHHHHHhhcC
Q 016003 9 EVSDLCLGKPALRALSISAAIADALSALKNS-----DESFISVWDCNCCSNHRKLGDACECQCVGKVCMVDVICYLCKDS 83 (397)
Q Consensus 9 ~v~dl~~~k~~li~v~~~~tv~~Al~~L~~~-----~I~s~PV~d~~~~~~~~~~~~~~~~~~vGiv~~~Dil~~l~~~~ 83 (397)
+++.+| +++++++++++|+.+|++.|.++ ++..+||+|. +++|+|+++..|++..
T Consensus 2 taG~iM--~~d~i~v~~~~tv~ea~~~m~~~~~~~~~~~~~~Vvd~-------------~~~l~G~v~~~~l~~~----- 61 (127)
T d2ouxa2 2 TAGAIM--TTEFVSIVANQTVRSAMYVLKNQADMAETIYYVYVVDQ-------------ENHLVGVISLRDLIVN----- 61 (127)
T ss_dssp BHHHHC--BSCCCEECSSSBHHHHHHHHHHHCSSCSCCSEEEEECT-------------TCBEEEEEEHHHHTTS-----
T ss_pred ChhHhC--CCCcEEECCCCcHHHHHHHhHhhcccccceeeeEEEec-------------CCeEEEEEEeeccccc-----
Confidence 689999 57899999999999999999887 5899999997 4789999999888632
Q ss_pred CCCChhhhhcCChhhhccCCCCCceEEeCCCCCHHHHHHHHh-cCCceEEEeccCcchhhhhhhcccccccccCCCCcee
Q 016003 84 NSLSPSLALKQPVSVLLPQLLPPLVMHVEPSCSLLEAMDLML-GGAQNLVVPIKNRLSIKRKQQQKLSSSSLTNHNGREF 162 (397)
Q Consensus 84 ~l~~~~~~~~~~V~~lm~~~~~~~~~~V~~~~sL~~al~~m~-~g~~r~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (397)
..+.+|+++|... ++++.+++++.+|++.|. ++++++||++++ |+++
T Consensus 62 -------~~~~~v~~im~~~----~~~v~~~~~l~~a~~~m~~~~~~~lPVVD~~---------------------g~lv 109 (127)
T d2ouxa2 62 -------DDDTLIADILNER----VISVHVGDDQEDVAQTIRDYDFLAVPVTDYD---------------------DHLL 109 (127)
T ss_dssp -------CTTSBHHHHSBSC----CCCEETTSBHHHHHHHHHHHTCSEEEEECTT---------------------CBEE
T ss_pred -------cccEEhhhhccCC----CccCCCCCCHHHHHHHHHHhCCEEEEEEeCC---------------------CEEE
Confidence 2357899999765 889999999999999999 799999998632 5789
Q ss_pred eeecHHHHHHHHHhc
Q 016003 163 CWLTQEDIIRFILSS 177 (397)
Q Consensus 163 ~IITq~DIi~~l~~~ 177 (397)
|+||..||++++.+.
T Consensus 110 GiIt~~Dil~~i~ee 124 (127)
T d2ouxa2 110 GIVTVDDIIDVIDDE 124 (127)
T ss_dssp EEEEHHHHHHHHHHH
T ss_pred EEEEHHHHHHHHHHH
Confidence 999999999998653
|
| >d2yvxa2 d.37.1.1 (A:132-275) Magnesium transporter MgtE {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CBS-domain pair superfamily: CBS-domain pair family: CBS-domain pair domain: Magnesium transporter MgtE species: Thermus thermophilus [TaxId: 274]
Probab=99.53 E-value=3.9e-15 Score=126.66 Aligned_cols=117 Identities=21% Similarity=0.232 Sum_probs=101.3
Q ss_pred hhhhhhcCCCCeEEEeCChhHHHHHHHHhhC-----CCceEEEEccCCCCCCCCCCCCCCCeEEEEEehhHHHHHHhhcC
Q 016003 9 EVSDLCLGKPALRALSISAAIADALSALKNS-----DESFISVWDCNCCSNHRKLGDACECQCVGKVCMVDVICYLCKDS 83 (397)
Q Consensus 9 ~v~dl~~~k~~li~v~~~~tv~~Al~~L~~~-----~I~s~PV~d~~~~~~~~~~~~~~~~~~vGiv~~~Dil~~l~~~~ 83 (397)
+++.+| +++++++++++|+.+|++.|.++ ++.++||+|.+ ++++|+++..||...
T Consensus 2 taG~iM--~~~~itv~~~~tv~ea~~~m~~~~~~~~~~~~~~Vvd~~-------------~~l~G~v~~~dl~~~----- 61 (144)
T d2yvxa2 2 EAGGLM--TPEYVAVREGMTVEEVLRFLRRAAPDAETIYYIYVVDEK-------------GRLKGVLSLRDLIVA----- 61 (144)
T ss_dssp SSGGGC--BSCCCEECSSCBHHHHHHHSSSSCTTSSCSSBCEEBCTT-------------CBBCCBCBHHHHTTS-----
T ss_pred Cccccc--CCCCEEECCCCcHHHHHHHHHHhcccccceeeeEEecCC-------------CCEecccchhhhhhc-----
Confidence 688999 46899999999999999999887 48999999973 799999999998643
Q ss_pred CCCChhhhhcCChhhhccCCCCCceEEeCCCCCHHHHHHHHh-cCCceEEEeccCcchhhhhhhcccccccccCCCCcee
Q 016003 84 NSLSPSLALKQPVSVLLPQLLPPLVMHVEPSCSLLEAMDLML-GGAQNLVVPIKNRLSIKRKQQQKLSSSSLTNHNGREF 162 (397)
Q Consensus 84 ~l~~~~~~~~~~V~~lm~~~~~~~~~~V~~~~sL~~al~~m~-~g~~r~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (397)
..+.++.++|... ++++.|++++.+|++.|. ++++++||++++ |+++
T Consensus 62 -------~~~~~v~~im~~~----~~~v~~~~~~~~a~~~m~~~~~~~lPVVd~~---------------------g~lv 109 (144)
T d2yvxa2 62 -------DPRTRVAEIMNPK----VVYVRTDTDQEEVARLMADYDFTVLPVVDEE---------------------GRLV 109 (144)
T ss_dssp -------CTTCBSTTTSBSS----CCCEESSCCHHHHHHHHHHSCCSEEEEECSS---------------------CBEE
T ss_pred -------ccccchHHhcccC----CccCCCCChHHHHHHHHHHcCCCEEEEEeEC---------------------CEEE
Confidence 1246789999766 889999999999999999 799999998642 5789
Q ss_pred eeecHHHHHHHHHhc
Q 016003 163 CWLTQEDIIRFILSS 177 (397)
Q Consensus 163 ~IITq~DIi~~l~~~ 177 (397)
|+||..||++++.+.
T Consensus 110 GiIt~~Dil~~l~~e 124 (144)
T d2yvxa2 110 GIVTVDDVLDVLEAE 124 (144)
T ss_dssp EEEEHHHHHHHHHHH
T ss_pred EEEEHHHHHHHHHHH
Confidence 999999999999764
|
| >d1vr9a3 d.37.1.1 (A:1-121) Hypothetical protein TM0892, CBS tandem {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CBS-domain pair superfamily: CBS-domain pair family: CBS-domain pair domain: Hypothetical protein TM0892, CBS tandem species: Thermotoga maritima [TaxId: 2336]
Probab=99.53 E-value=2.3e-14 Score=117.95 Aligned_cols=118 Identities=17% Similarity=0.103 Sum_probs=101.8
Q ss_pred chhhhhhcCCCCeEEEeCChhHHHHHHHHhhCCCceEEEEccCCCCCCCCCCCCCCCeEEEEEehhHHHHHHhhcCCCCC
Q 016003 8 DEVSDLCLGKPALRALSISAAIADALSALKNSDESFISVWDCNCCSNHRKLGDACECQCVGKVCMVDVICYLCKDSNSLS 87 (397)
Q Consensus 8 ~~v~dl~~~k~~li~v~~~~tv~~Al~~L~~~~I~s~PV~d~~~~~~~~~~~~~~~~~~vGiv~~~Dil~~l~~~~~l~~ 87 (397)
++|+++|. +++.++++++|+.+|++.|.+++..++||+|. +++++|+++..|++.+.
T Consensus 1 m~v~~~m~--~~~~~v~~~~tv~ea~~~m~~~~~~~v~Vvd~-------------~~~~~Gii~~~dl~~~~-------- 57 (121)
T d1vr9a3 1 MKVKKWVT--QDFPMVEESATVRECLHRMRQYQTNECIVKDR-------------EGHFRGVVNKEDLLDLD-------- 57 (121)
T ss_dssp CBGGGGCB--SCSCEEETTCBHHHHHHHHHHTTSSEEEEECT-------------TSBEEEEEEGGGGTTSC--------
T ss_pred CCchhhhc--CCCeEECCCCCHHHHHHhhhhcCcEEEEEEeC-------------CceeEEEeehhhhhhhh--------
Confidence 57899994 67899999999999999999999999999986 36899999999997431
Q ss_pred hhhhhcCChhhhccCCCCCceEEeCCCCCHHHHHHHHh-cCCceEEEeccCcchhhhhhhcccccccccCCCCceeeeec
Q 016003 88 PSLALKQPVSVLLPQLLPPLVMHVEPSCSLLEAMDLML-GGAQNLVVPIKNRLSIKRKQQQKLSSSSLTNHNGREFCWLT 166 (397)
Q Consensus 88 ~~~~~~~~V~~lm~~~~~~~~~~V~~~~sL~~al~~m~-~g~~r~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IIT 166 (397)
.+.++.++|..+ ++++.+++++.++++.|. +++.+++|++++ |+.+|+||
T Consensus 58 ----~~~~v~~~~~~~----~~~v~~~~~l~~~~~~~~~~~~~~lpVvde~---------------------g~~~Gvit 108 (121)
T d1vr9a3 58 ----LDSSVFNKVSLP----DFFVHEEDNITHALLLFLEHQEPYLPVVDEE---------------------MRLKGAVS 108 (121)
T ss_dssp ----TTSBSGGGCBCT----TCCEETTSBHHHHHHHHHHCCCSEEEEECTT---------------------CBEEEEEE
T ss_pred ----ccccccccccCc----cEEECCCCCHHHHHHHHHhcCceeeeeECCC---------------------CeEEEEEE
Confidence 245789999765 788999999999999999 789999988643 56899999
Q ss_pred HHHHHHHHHhc
Q 016003 167 QEDIIRFILSS 177 (397)
Q Consensus 167 q~DIi~~l~~~ 177 (397)
..|+++++.+.
T Consensus 109 ~~dil~~l~~~ 119 (121)
T d1vr9a3 109 LHDFLEALIEA 119 (121)
T ss_dssp HHHHHHHHHHS
T ss_pred HHHHHHHHHHh
Confidence 99999998753
|
| >d1zfja4 d.37.1.1 (A:95-220) Type II inosine monophosphate dehydrogenase CBS domains {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CBS-domain pair superfamily: CBS-domain pair family: CBS-domain pair domain: Type II inosine monophosphate dehydrogenase CBS domains species: Streptococcus pyogenes [TaxId: 1314]
Probab=99.51 E-value=3.3e-14 Score=117.92 Aligned_cols=111 Identities=15% Similarity=0.104 Sum_probs=89.9
Q ss_pred CeEEEeCChhHHHHHHHHhhCCCceEEEEccCCCCCCCCCCCCCCCeEEEEEehhHHHHHHhhcCCCCChhhhhcCChhh
Q 016003 19 ALRALSISAAIADALSALKNSDESFISVWDCNCCSNHRKLGDACECQCVGKVCMVDVICYLCKDSNSLSPSLALKQPVSV 98 (397)
Q Consensus 19 ~li~v~~~~tv~~Al~~L~~~~I~s~PV~d~~~~~~~~~~~~~~~~~~vGiv~~~Dil~~l~~~~~l~~~~~~~~~~V~~ 98 (397)
..+++++++|+.+|+++|.+++++++||+|..+ +++++|+||..||+..... +.++..
T Consensus 6 dpvtv~~~~tv~~a~~~m~~~~~~~~pVvD~~~-----------~~~lvGivt~~Di~~~~~~-----------~~~~~~ 63 (126)
T d1zfja4 6 DPFFLTPEHKVSEAEELMQRYRISGVPIVETLA-----------NRKLVGIITNRDMRFISDY-----------NAPISE 63 (126)
T ss_dssp SCCCBCSSSBHHHHHHHHHHTTCSEEEEESCTT-----------TCBEEEEEEHHHHHHCSCS-----------SSBTTT
T ss_pred CceEECCCCCHHHHHHHHHHhCCCcEEEEeecc-----------CCeEEEEeEHHHHHHhhcc-----------CCceee
Confidence 357999999999999999999999999999632 3789999999999765322 123334
Q ss_pred hccCCCCCceEEeCCCCCHHHHHHHHh-cCCceEEEeccCcchhhhhhhcccccccccCCCCceeeeecHHHHHHHHH
Q 016003 99 LLPQLLPPLVMHVEPSCSLLEAMDLML-GGAQNLVVPIKNRLSIKRKQQQKLSSSSLTNHNGREFCWLTQEDIIRFIL 175 (397)
Q Consensus 99 lm~~~~~~~~~~V~~~~sL~~al~~m~-~g~~r~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IITq~DIi~~l~ 175 (397)
.|. ..+++++.+++++.+|++.|. +++++++|++++ ++++||||..||++.+.
T Consensus 64 ~~~---~~~~~~~~~~~~l~~a~~~m~~~~~~~lpVVd~~---------------------g~lvGiiT~~Dil~~~~ 117 (126)
T d1zfja4 64 HMT---SEHLVTAAVGTDLETAERILHEHRIEKLPLVDNS---------------------GRLSGLITIKDIEKVIE 117 (126)
T ss_dssp SCC---CSCCCCEETTCCHHHHHHHHHHTTCSEEEEECTT---------------------SBEEEEEEHHHHHHHHH
T ss_pred eee---ccceeecCCCCCHHHHHHHHHhcCCcEEEEEcCC---------------------CeEEEEEEHHHHHHHhh
Confidence 442 234788999999999999999 899999998632 57889999999999874
|
| >d1jr1a4 d.37.1.1 (A:113-232) Type II inosine monophosphate dehydrogenase CBS domains {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CBS-domain pair superfamily: CBS-domain pair family: CBS-domain pair domain: Type II inosine monophosphate dehydrogenase CBS domains species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=99.45 E-value=2.4e-15 Score=124.09 Aligned_cols=113 Identities=13% Similarity=0.103 Sum_probs=54.7
Q ss_pred CeEEEeCChhHHHHHHHHhhCCCceEEEEccCCCCCCCCCCCCCCCeEEEEEehhHHHHHHhhcCCCCChhhhhcCChhh
Q 016003 19 ALRALSISAAIADALSALKNSDESFISVWDCNCCSNHRKLGDACECQCVGKVCMVDVICYLCKDSNSLSPSLALKQPVSV 98 (397)
Q Consensus 19 ~li~v~~~~tv~~Al~~L~~~~I~s~PV~d~~~~~~~~~~~~~~~~~~vGiv~~~Dil~~l~~~~~l~~~~~~~~~~V~~ 98 (397)
+.+++++++|+.+|+++|.+++++++||+|.++. .++++||||.+|+...... .++.++..
T Consensus 5 ~pvtv~~~~tl~da~~~m~~~~i~~~pVvd~~~~----------~~~lvGivT~~Di~~~~~~---------~~~~~~~~ 65 (120)
T d1jr1a4 5 DPVVLSPKDRVRDVFEAKARHGFCGIPITDTGRM----------GSRLVGIISSRDIDFLKEE---------EHDRFLEE 65 (120)
T ss_dssp TTCC----CCCC--CCBC---------------C----------TTCCC-------------------------------
T ss_pred CCEEECCcCCHHHHHHHHHHhCCCeEEEeecccc----------CCeEeeeeeeeeeeehhcc---------ccCceeEE
Confidence 3479999999999999999999999999986322 4789999999998643322 22345566
Q ss_pred hccCCCCCceEEeCCCCCHHHHHHHHh-cCCceEEEeccCcchhhhhhhcccccccccCCCCceeeeecHHHHHHH
Q 016003 99 LLPQLLPPLVMHVEPSCSLLEAMDLML-GGAQNLVVPIKNRLSIKRKQQQKLSSSSLTNHNGREFCWLTQEDIIRF 173 (397)
Q Consensus 99 lm~~~~~~~~~~V~~~~sL~~al~~m~-~g~~r~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IITq~DIi~~ 173 (397)
+|.. ..+++++.+++++.+|+++|. +++++++|++++ ++++||||+.||+|.
T Consensus 66 ~~~~--~~~~~~v~~~~~~~~a~~~m~~~~i~~lpVVd~~---------------------~~lvGiiT~~Di~k~ 118 (120)
T d1jr1a4 66 IMTK--REDLVVAPAGITLKEANEILQRSKKGKLPIVNEN---------------------DELVAIIARTDLKKN 118 (120)
T ss_dssp CCSB--TTTSCCEETTCCHHHHHHHTCSCC---CEEEETT---------------------TEEEEEECHHHHHHH
T ss_pred EEee--ccCceEECCCCCHHHHHHHHHHcCccEEEEEcCC---------------------CEEEEEEEHHHhhhc
Confidence 6532 244889999999999999999 799999998643 468899999999975
|