Citrus Sinensis ID: 016025
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 396 | 2.2.26 [Sep-21-2011] | |||||||
| Q94AQ6 | 373 | NAD-dependent protein dea | yes | no | 0.921 | 0.978 | 0.72 | 1e-157 | |
| Q1JQC6 | 315 | NAD-dependent protein dea | yes | no | 0.676 | 0.850 | 0.446 | 2e-67 | |
| Q8R216 | 333 | NAD-dependent protein dea | yes | no | 0.676 | 0.804 | 0.453 | 3e-67 | |
| Q9Y6E7 | 314 | NAD-dependent protein dea | yes | no | 0.681 | 0.859 | 0.457 | 7e-67 | |
| Q8IRR5 | 312 | NAD-dependent protein dea | yes | no | 0.691 | 0.878 | 0.443 | 2e-62 | |
| Q8PQK3 | 293 | NAD-dependent protein dea | yes | no | 0.671 | 0.907 | 0.445 | 4e-59 | |
| Q8PDM9 | 293 | NAD-dependent protein dea | yes | no | 0.671 | 0.907 | 0.433 | 1e-58 | |
| Q4UZX0 | 293 | NAD-dependent protein dea | yes | no | 0.671 | 0.907 | 0.433 | 1e-58 | |
| F4P804 | 305 | NAD-dependent protein dea | N/A | no | 0.654 | 0.849 | 0.440 | 1e-58 | |
| Q89EA6 | 273 | NAD-dependent protein dea | yes | no | 0.661 | 0.959 | 0.441 | 3e-58 |
| >sp|Q94AQ6|SIR4_ARATH NAD-dependent protein deacetylase SRT2 OS=Arabidopsis thaliana GN=SRT2 PE=2 SV=1 | Back alignment and function desciption |
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Score = 555 bits (1430), Expect = e-157, Method: Compositional matrix adjust.
Identities = 270/375 (72%), Positives = 314/375 (83%), Gaps = 10/375 (2%)
Query: 29 NSSGMLARVKSEIVQSSIKAQQLLSKGRRVFPHQGSVKFVQTSWRMSIPGLPSSRHEDKA 88
N + V +++ S + L S G V +G +FV+T+ R+SIPG S +E KA
Sbjct: 2 NMRRVFGGVSTDLFPSRSMYRPLQSGGNLVMLFKGCRRFVRTTCRVSIPG-GSLGNESKA 60
Query: 89 PASPKVLRDKKAVPDADPPSIEDIN-------QFAKLIVLTGAGISTECGIPDYRSPNGA 141
P P+ LRD+K VPDADPP++EDI+ Q ++L +LTGAG+STECGIPDYRSPNGA
Sbjct: 61 P--PRFLRDRKIVPDADPPNMEDIHKLYRLFEQSSRLTILTGAGVSTECGIPDYRSPNGA 118
Query: 142 YSSGFKPITHQQFVRSSRARRRYWARSYAGWRRFMAAQPNPAHFALASLEKAGRIDCMIT 201
YSSGFKPITHQ+F RSSRARRRYWARSYAGWRRF AAQP PAH ALASLEKAGRI+ MIT
Sbjct: 119 YSSGFKPITHQEFTRSSRARRRYWARSYAGWRRFTAAQPGPAHTALASLEKAGRINFMIT 178
Query: 202 QNVDRLHHRAGSNPLELHGTVYTVVCLDCGFSFCRDLFQDQVKALNPKWAEAIESLDYGS 261
QNVDRLHHRAGS+PLELHGTVYTV+CL+CGFSF RDLFQDQ+KA+NPKWAEAIES+D+G
Sbjct: 179 QNVDRLHHRAGSDPLELHGTVYTVMCLECGFSFPRDLFQDQLKAINPKWAEAIESIDHGD 238
Query: 262 PGSDRSFGMKQRPDGDIEIDEKFWEEDFHIPTCQKCNGVLKPDVVFFGDNVPKDRADKAM 321
PGS++SFGMKQRPDGDIEIDEKFWEE FHIP C+KC GVLKPDV+FFGDN+PK+RA +AM
Sbjct: 239 PGSEKSFGMKQRPDGDIEIDEKFWEEGFHIPVCEKCKGVLKPDVIFFGDNIPKERATQAM 298
Query: 322 EAAKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVNVGETRADDLTTLKISARLGEI 381
E AK+ DAFLVLGSSLMTMSA+RL RAAHEAG+ AIVN+GETRADD+ LKI+AR+GEI
Sbjct: 299 EVAKQSDAFLVLGSSLMTMSAFRLCRAAHEAGAMTAIVNIGETRADDIVPLKINARVGEI 358
Query: 382 LPRVLDVGSLSIPAL 396
L RVLDVGSLS+PAL
Sbjct: 359 LHRVLDVGSLSVPAL 373
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NAD-dependent protein deacetylase which modulates the activities of several enzymes which are inactive in their acetylated form (By similarity). Negatively regulates plant basal defense against plant pathogens, possibly by suppressing salicylic acid biosynthesis. Arabidopsis thaliana (taxid: 3702) EC: 3EC: .EC: 5EC: .EC: 1EC: .EC: - |
| >sp|Q1JQC6|SIR4_BOVIN NAD-dependent protein deacetylase sirtuin-4 OS=Bos taurus GN=SIRT4 PE=2 SV=1 | Back alignment and function description |
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| >sp|Q8R216|SIR4_MOUSE NAD-dependent protein deacetylase sirtuin-4 OS=Mus musculus GN=Sirt4 PE=1 SV=3 | Back alignment and function description |
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| >sp|Q9Y6E7|SIR4_HUMAN NAD-dependent protein deacetylase sirtuin-4 OS=Homo sapiens GN=SIRT4 PE=1 SV=1 | Back alignment and function description |
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| >sp|Q8IRR5|SIR4_DROME NAD-dependent protein deacetylase Sirt4 OS=Drosophila melanogaster GN=Sirt4 PE=2 SV=2 | Back alignment and function description |
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| >sp|Q8PQK3|NPD_XANAC NAD-dependent protein deacetylase OS=Xanthomonas axonopodis pv. citri (strain 306) GN=cobB PE=3 SV=2 | Back alignment and function description |
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| >sp|Q8PDM9|NPD_XANCP NAD-dependent protein deacetylase OS=Xanthomonas campestris pv. campestris (strain ATCC 33913 / NCPPB 528 / LMG 568) GN=cobB PE=3 SV=1 | Back alignment and function description |
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| >sp|Q4UZX0|NPD_XANC8 NAD-dependent protein deacetylase OS=Xanthomonas campestris pv. campestris (strain 8004) GN=cobB PE=3 SV=1 | Back alignment and function description |
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| >sp|F4P804|SIR4_BATDJ NAD-dependent protein deacetylase SIR4 OS=Batrachochytrium dendrobatidis (strain JAM81 / FGSC 10211) GN=BATDEDRAFT_20316 PE=3 SV=1 | Back alignment and function description |
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| >sp|Q89EA6|NPD2_BRAJA NAD-dependent protein deacetylase 2 OS=Bradyrhizobium japonicum (strain USDA 110) GN=cobB2 PE=3 SV=2 | Back alignment and function description |
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Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 396 | ||||||
| 297806957 | 356 | hypothetical protein ARALYDRAFT_350148 [ | 0.863 | 0.960 | 0.765 | 1e-155 | |
| 145334337 | 376 | sirtuin 2 [Arabidopsis thaliana] gi|3320 | 0.926 | 0.976 | 0.718 | 1e-155 | |
| 18415923 | 373 | sirtuin 2 [Arabidopsis thaliana] gi|3068 | 0.921 | 0.978 | 0.72 | 1e-155 | |
| 42573313 | 354 | sirtuin 2 [Arabidopsis thaliana] gi|2224 | 0.866 | 0.968 | 0.756 | 1e-155 | |
| 9955510 | 451 | SIR2-family protein [Arabidopsis thalian | 0.866 | 0.760 | 0.752 | 1e-154 | |
| 449459214 | 387 | PREDICTED: NAD-dependent protein deacety | 0.949 | 0.971 | 0.697 | 1e-153 | |
| 224081046 | 352 | histone deacetylase [Populus trichocarpa | 0.866 | 0.974 | 0.779 | 1e-153 | |
| 255550570 | 365 | chromatin regulatory protein sir2, putat | 0.851 | 0.923 | 0.751 | 1e-152 | |
| 356507447 | 393 | PREDICTED: NAD-dependent ADP-ribosyltran | 0.909 | 0.916 | 0.717 | 1e-151 | |
| 359466801 | 382 | sirtuin 2 [Vitis vinifera] | 0.924 | 0.958 | 0.718 | 1e-150 |
| >gi|297806957|ref|XP_002871362.1| hypothetical protein ARALYDRAFT_350148 [Arabidopsis lyrata subsp. lyrata] gi|297317199|gb|EFH47621.1| hypothetical protein ARALYDRAFT_350148 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
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Score = 555 bits (1431), Expect = e-155, Method: Compositional matrix adjust.
Identities = 271/354 (76%), Positives = 306/354 (86%), Gaps = 12/354 (3%)
Query: 51 LLSKGRRVFPHQGSVKFVQTSWRMSIPGLPSSRHEDKAPASPKVLRDKKAVPDADPPSIE 110
L S G V +G +FV+T+ R+SIPG S +E KAP P+ LRDKK VPDADPP++E
Sbjct: 5 LQSGGNLVMLFKGCRRFVRTTCRVSIPG-GSLGNESKAP--PRFLRDKKIVPDADPPNME 61
Query: 111 DIN-------QFAKLIVLTGAGISTECGIPDYRSPNGAYSSGFKPITHQQFVRSSRARRR 163
DIN Q ++L +LTGAGISTECGIPDYRSPNGAYSSGFKPITHQ+F RSSRARRR
Sbjct: 62 DINKLYRLFEQSSRLTILTGAGISTECGIPDYRSPNGAYSSGFKPITHQEFTRSSRARRR 121
Query: 164 YWARSYAGWRRFMAAQPNPAHFALASLEKAGRIDCMITQNVDRLHHRAGSNPLELHGTVY 223
YWARSYAGWRRF AAQP PAH ALASLEKAGRI+ MITQNVDRLHHRAGS+PLELHGTVY
Sbjct: 122 YWARSYAGWRRFTAAQPGPAHTALASLEKAGRINFMITQNVDRLHHRAGSDPLELHGTVY 181
Query: 224 TVVCLDCGFSFCRDLFQDQVKALNPK--WAEAIESLDYGSPGSDRSFGMKQRPDGDIEID 281
TV+CLDCGFSF RDLFQDQ+KA+NPK WAEAIES+D+G PGS++SFGMKQRPDGDIEID
Sbjct: 182 TVMCLDCGFSFSRDLFQDQLKAINPKASWAEAIESIDHGDPGSEKSFGMKQRPDGDIEID 241
Query: 282 EKFWEEDFHIPTCQKCNGVLKPDVVFFGDNVPKDRADKAMEAAKECDAFLVLGSSLMTMS 341
EKFWEE FHIP C+KC GVLKPDV+FFGDN+PK+RA +AME AK+ DAFLVLGSSLMTMS
Sbjct: 242 EKFWEEGFHIPVCEKCKGVLKPDVIFFGDNIPKERATQAMEVAKQSDAFLVLGSSLMTMS 301
Query: 342 AYRLVRAAHEAGSTIAIVNVGETRADDLTTLKISARLGEILPRVLDVGSLSIPA 395
A+RLVRAAHEAG+ AIVN+GETRADD+ LKI+AR+GEIL RVLDVGSLS+PA
Sbjct: 302 AFRLVRAAHEAGAMTAIVNIGETRADDIVPLKINARVGEILHRVLDVGSLSVPA 355
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Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|145334337|ref|NP_001078550.1| sirtuin 2 [Arabidopsis thaliana] gi|332003977|gb|AED91360.1| sirtuin 2 [Arabidopsis thaliana] | Back alignment and taxonomy information |
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| >gi|18415923|ref|NP_568207.1| sirtuin 2 [Arabidopsis thaliana] gi|30682583|ref|NP_850795.1| sirtuin 2 [Arabidopsis thaliana] gi|75249793|sp|Q94AQ6.1|SIR4_ARATH RecName: Full=NAD-dependent protein deacetylase SRT2; AltName: Full=Regulatory protein SIR2 homolog 2; Flags: Precursor gi|15028033|gb|AAK76547.1| putative SIR2-family protein [Arabidopsis thaliana] gi|21689769|gb|AAM67528.1| putative SIR2-family protein [Arabidopsis thaliana] gi|332003972|gb|AED91355.1| sirtuin 2 [Arabidopsis thaliana] gi|332003973|gb|AED91356.1| sirtuin 2 [Arabidopsis thaliana] | Back alignment and taxonomy information |
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| >gi|42573313|ref|NP_974753.1| sirtuin 2 [Arabidopsis thaliana] gi|222423276|dbj|BAH19614.1| AT5G09230 [Arabidopsis thaliana] gi|332003975|gb|AED91358.1| sirtuin 2 [Arabidopsis thaliana] | Back alignment and taxonomy information |
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| >gi|9955510|emb|CAC05449.1| SIR2-family protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
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| >gi|449459214|ref|XP_004147341.1| PREDICTED: NAD-dependent protein deacetylase SRT2-like [Cucumis sativus] | Back alignment and taxonomy information |
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| >gi|224081046|ref|XP_002306275.1| histone deacetylase [Populus trichocarpa] gi|222855724|gb|EEE93271.1| histone deacetylase [Populus trichocarpa] | Back alignment and taxonomy information |
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| >gi|255550570|ref|XP_002516335.1| chromatin regulatory protein sir2, putative [Ricinus communis] gi|223544565|gb|EEF46082.1| chromatin regulatory protein sir2, putative [Ricinus communis] | Back alignment and taxonomy information |
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| >gi|356507447|ref|XP_003522478.1| PREDICTED: NAD-dependent ADP-ribosyltransferase sirtuin-4-like [Glycine max] | Back alignment and taxonomy information |
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| >gi|359466801|gb|AEV46831.1| sirtuin 2 [Vitis vinifera] | Back alignment and taxonomy information |
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Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 396 | ||||||
| TAIR|locus:2184717 | 373 | SRT2 "AT5G09230" [Arabidopsis | 0.921 | 0.978 | 0.669 | 1.7e-130 | |
| UNIPROTKB|F1PU57 | 312 | SIRT4 "NAD-dependent protein d | 0.676 | 0.858 | 0.422 | 2.6e-54 | |
| UNIPROTKB|Q1JQC6 | 315 | SIRT4 "NAD-dependent protein d | 0.676 | 0.850 | 0.415 | 3.4e-54 | |
| MGI|MGI:1922637 | 333 | Sirt4 "sirtuin 4 (silent matin | 0.676 | 0.804 | 0.419 | 3.4e-54 | |
| UNIPROTKB|Q9Y6E7 | 314 | SIRT4 "NAD-dependent protein d | 0.681 | 0.859 | 0.426 | 7e-54 | |
| RGD|1310413 | 311 | Sirt4 "sirtuin 4" [Rattus norv | 0.676 | 0.861 | 0.415 | 1.1e-53 | |
| FB|FBgn0029783 | 312 | Sirt4 "Sirt4" [Drosophila mela | 0.689 | 0.875 | 0.419 | 1.9e-53 | |
| UNIPROTKB|F1RJK2 | 314 | SIRT4 "NAD-dependent protein d | 0.676 | 0.853 | 0.408 | 2.7e-52 | |
| UNIPROTKB|F1NB70 | 294 | SIRT4 "Uncharacterized protein | 0.704 | 0.948 | 0.4 | 9.5e-50 | |
| ZFIN|ZDB-GENE-041010-65 | 310 | zgc:103539 "zgc:103539" [Danio | 0.651 | 0.832 | 0.422 | 7.7e-48 |
| TAIR|locus:2184717 SRT2 "AT5G09230" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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Score = 1280 (455.6 bits), Expect = 1.7e-130, P = 1.7e-130
Identities = 251/375 (66%), Positives = 295/375 (78%)
Query: 29 NSSGMLARVKSEIVQSSIKAQQLLSKGRRVFPHQGSVKFVQTSWRMSIPGLPSSRHEDKA 88
N + V +++ S + L S G V +G +FV+T+ R+SIPG S +E KA
Sbjct: 2 NMRRVFGGVSTDLFPSRSMYRPLQSGGNLVMLFKGCRRFVRTTCRVSIPG-GSLGNESKA 60
Query: 89 PASPKVLRDKKAVPDADPPSIEDIN-------QFAKLIVLTGAGISTECGIPDYRSPNGA 141
P P+ LRD+K VPDADPP++EDI+ Q ++L +LTGAG+STECGIPDYRSPNGA
Sbjct: 61 P--PRFLRDRKIVPDADPPNMEDIHKLYRLFEQSSRLTILTGAGVSTECGIPDYRSPNGA 118
Query: 142 YSSGFKPITHQQFVXXXXXXXXXXXXXXXXXXXFMAAQPNPAHFALASLEKAGRIDCMIT 201
YSSGFKPITHQ+F F AAQP PAH ALASLEKAGRI+ MIT
Sbjct: 119 YSSGFKPITHQEFTRSSRARRRYWARSYAGWRRFTAAQPGPAHTALASLEKAGRINFMIT 178
Query: 202 QNVDRLHHRAGSNPLELHGTVYTVVCLDCGFSFCRDLFQDQVKALNPKWAEAIESLDYGS 261
QNVDRLHHRAGS+PLELHGTVYTV+CL+CGFSF RDLFQDQ+KA+NPKWAEAIES+D+G
Sbjct: 179 QNVDRLHHRAGSDPLELHGTVYTVMCLECGFSFPRDLFQDQLKAINPKWAEAIESIDHGD 238
Query: 262 PGSDRSFGMKQRPDGDIEIDEKFWEEDFHIPTCQKCNGVLKPDVVFFGDNVPKDRADKAM 321
PGS++SFGMKQRPDGDIEIDEKFWEE FHIP C+KC GVLKPDV+FFGDN+PK+RA +AM
Sbjct: 239 PGSEKSFGMKQRPDGDIEIDEKFWEEGFHIPVCEKCKGVLKPDVIFFGDNIPKERATQAM 298
Query: 322 EAAKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVNVGETRADDLTTLKISARLGEI 381
E AK+ DAFLVLGSSLMTMSA+RL RAAHEAG+ AIVN+GETRADD+ LKI+AR+GEI
Sbjct: 299 EVAKQSDAFLVLGSSLMTMSAFRLCRAAHEAGAMTAIVNIGETRADDIVPLKINARVGEI 358
Query: 382 LPRVLDVGSLSIPAL 396
L RVLDVGSLS+PAL
Sbjct: 359 LHRVLDVGSLSVPAL 373
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| UNIPROTKB|F1PU57 SIRT4 "NAD-dependent protein deacetylase sirtuin-4" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
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| UNIPROTKB|Q1JQC6 SIRT4 "NAD-dependent protein deacetylase sirtuin-4" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
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| MGI|MGI:1922637 Sirt4 "sirtuin 4 (silent mating type information regulation 2 homolog) 4 (S. cerevisiae)" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
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| UNIPROTKB|Q9Y6E7 SIRT4 "NAD-dependent protein deacetylase sirtuin-4" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
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| RGD|1310413 Sirt4 "sirtuin 4" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
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| FB|FBgn0029783 Sirt4 "Sirt4" [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
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| UNIPROTKB|F1RJK2 SIRT4 "NAD-dependent protein deacetylase sirtuin-4" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
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| UNIPROTKB|F1NB70 SIRT4 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
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| ZFIN|ZDB-GENE-041010-65 zgc:103539 "zgc:103539" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q94AQ6 | SIR4_ARATH | 3, ., 5, ., 1, ., - | 0.72 | 0.9217 | 0.9785 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 2.4.2 | LOW CONFIDENCE prediction! |
| 3rd Layer | 3.5.1 | LOW CONFIDENCE prediction! |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 396 | |||
| cd01409 | 260 | cd01409, SIRT4, SIRT4: Eukaryotic and prokaryotic | 1e-144 | |
| PRK05333 | 285 | PRK05333, PRK05333, NAD-dependent deacetylase; Pro | 1e-101 | |
| cd01407 | 218 | cd01407, SIR2-fam, SIR2 family of proteins include | 8e-84 | |
| cd00296 | 222 | cd00296, SIR2, SIR2 superfamily of proteins includ | 1e-71 | |
| COG0846 | 250 | COG0846, SIR2, NAD-dependent protein deacetylases, | 5e-66 | |
| cd01413 | 222 | cd01413, SIR2_Af2, SIR2_Af2: Archaeal and prokaryo | 5e-62 | |
| PRK00481 | 242 | PRK00481, PRK00481, NAD-dependent deacetylase; Pro | 3e-61 | |
| PRK14138 | 244 | PRK14138, PRK14138, NAD-dependent deacetylase; Pro | 6e-51 | |
| cd01412 | 224 | cd01412, SIRT5_Af1_CobB, SIRT5_Af1_CobB: Eukaryoti | 1e-50 | |
| pfam02146 | 177 | pfam02146, SIR2, Sir2 family | 5e-49 | |
| cd01410 | 206 | cd01410, SIRT7, SIRT7: Eukaryotic and prokaryotic | 2e-48 | |
| cd01411 | 225 | cd01411, SIR2H, SIR2H: Uncharacterized prokaryotic | 2e-33 | |
| PTZ00409 | 271 | PTZ00409, PTZ00409, Sir2 (Silent Information Regul | 1e-28 | |
| cd01408 | 235 | cd01408, SIRT1, SIRT1: Eukaryotic group (class1) w | 4e-28 | |
| PTZ00408 | 242 | PTZ00408, PTZ00408, NAD-dependent deacetylase; Pro | 2e-21 | |
| PTZ00410 | 349 | PTZ00410, PTZ00410, NAD-dependent SIR2; Provisiona | 5e-16 |
| >gnl|CDD|238700 cd01409, SIRT4, SIRT4: Eukaryotic and prokaryotic group (class2) which includes human sirtuin SIRT4 and several bacterial homologs; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation | Back alignment and domain information |
|---|
Score = 409 bits (1054), Expect = e-144
Identities = 154/267 (57%), Positives = 182/267 (68%), Gaps = 17/267 (6%)
Query: 117 KLIVLTGAGISTECGIPDYRSPNGAYSSGFKPITHQQFVRSSRARRRYWARSYAGWRRFM 176
+L+VLTGAGISTE GIPDYRS G YS F+P+THQ+F+RS AR+RYWARS+ GW RF
Sbjct: 10 RLLVLTGAGISTESGIPDYRSEGGLYSRTFRPMTHQEFMRSPAARQRYWARSFVGWPRFS 69
Query: 177 AAQPNPAHFALASLEKAGRIDCMITQNVDRLHHRAGS-NPLELHGTVYTVVCLDCGFSFC 235
AAQPN AH ALA+LE AGR+ +ITQNVD LH +AGS N +ELHG+++ VVCL CGF
Sbjct: 70 AAQPNAAHRALAALEAAGRLHGLITQNVDGLHTKAGSRNVVELHGSLHRVVCLSCGFRTP 129
Query: 236 RDLFQDQVKALNPKWAEAIESLDYGSPGSDRSFGMKQRPDGDIEIDEKFWEEDFHIPTCQ 295
R QD+++ALNP +AE Q PDGD E F +P C+
Sbjct: 130 RAELQDRLEALNPGFAEQAAG---------------QAPDGD-VDLEDEQVAGFRVPECE 173
Query: 296 KCNGVLKPDVVFFGDNVPKDRADKAMEAAKECDAFLVLGSSLMTMSAYRLVRAAHEAGST 355
+C GVLKPDVVFFG+NVP+DR A E DA LVLGSSLM S YR V AA EAG
Sbjct: 174 RCGGVLKPDVVFFGENVPRDRVVTAAARLAEADALLVLGSSLMVYSGYRFVLAAAEAGLP 233
Query: 356 IAIVNVGETRADDLTTLKISARLGEIL 382
IAIVN+G TRAD L TLK+ AR GE+L
Sbjct: 234 IAIVNIGPTRADHLATLKVDARCGEVL 260
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Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span. Length = 260 |
| >gnl|CDD|235415 PRK05333, PRK05333, NAD-dependent deacetylase; Provisional | Back alignment and domain information |
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| >gnl|CDD|238698 cd01407, SIR2-fam, SIR2 family of proteins includes silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation, where the acetyl group from the lysine epsilon-amino group is transferred to the ADP-ribose moiety of NAD+, producing nicotinamide and the novel metabolite O-acetyl-ADP-ribose | Back alignment and domain information |
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| >gnl|CDD|238184 cd00296, SIR2, SIR2 superfamily of proteins includes silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation, where the acetyl group from the lysine epsilon-amino group is transferred to the ADP-ribose moiety of NAD+, producing nicotinamide and the novel metabolite O-acetyl-ADP-ribose | Back alignment and domain information |
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| >gnl|CDD|223915 COG0846, SIR2, NAD-dependent protein deacetylases, SIR2 family [Transcription] | Back alignment and domain information |
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| >gnl|CDD|238704 cd01413, SIR2_Af2, SIR2_Af2: Archaeal and prokaryotic group which includes Archaeoglobus fulgidus Sir2-Af2, Sulfolobus solfataricus ssSir2, and several bacterial homologs; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation | Back alignment and domain information |
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| >gnl|CDD|234777 PRK00481, PRK00481, NAD-dependent deacetylase; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|172627 PRK14138, PRK14138, NAD-dependent deacetylase; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|238703 cd01412, SIRT5_Af1_CobB, SIRT5_Af1_CobB: Eukaryotic, archaeal and prokaryotic group (class3) which includes human sirtuin SIRT5, Archaeoglobus fulgidus Sir2-Af1, and E | Back alignment and domain information |
|---|
| >gnl|CDD|216902 pfam02146, SIR2, Sir2 family | Back alignment and domain information |
|---|
| >gnl|CDD|238701 cd01410, SIRT7, SIRT7: Eukaryotic and prokaryotic group (class4) which includes human sirtuin SIRT6, SIRT7, and several bacterial homologs; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation | Back alignment and domain information |
|---|
| >gnl|CDD|238702 cd01411, SIR2H, SIR2H: Uncharacterized prokaryotic Sir2 homologs from several gram positive bacterial species and Fusobacteria; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation | Back alignment and domain information |
|---|
| >gnl|CDD|173599 PTZ00409, PTZ00409, Sir2 (Silent Information Regulator) protein; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|238699 cd01408, SIRT1, SIRT1: Eukaryotic group (class1) which includes human sirtuins SIRT1-3 and yeast Hst1-4; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation | Back alignment and domain information |
|---|
| >gnl|CDD|240405 PTZ00408, PTZ00408, NAD-dependent deacetylase; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|185600 PTZ00410, PTZ00410, NAD-dependent SIR2; Provisional | Back alignment and domain information |
|---|
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 396 | |||
| KOG2683 | 305 | consensus Sirtuin 4 and related class II sirtuins | 100.0 | |
| cd01409 | 260 | SIRT4 SIRT4: Eukaryotic and prokaryotic group (cla | 100.0 | |
| PRK05333 | 285 | NAD-dependent deacetylase; Provisional | 100.0 | |
| PRK14138 | 244 | NAD-dependent deacetylase; Provisional | 100.0 | |
| PTZ00409 | 271 | Sir2 (Silent Information Regulator) protein; Provi | 100.0 | |
| COG0846 | 250 | SIR2 NAD-dependent protein deacetylases, SIR2 fami | 100.0 | |
| cd01413 | 222 | SIR2_Af2 SIR2_Af2: Archaeal and prokaryotic group | 100.0 | |
| cd01408 | 235 | SIRT1 SIRT1: Eukaryotic group (class1) which inclu | 100.0 | |
| PRK00481 | 242 | NAD-dependent deacetylase; Provisional | 100.0 | |
| PTZ00408 | 242 | NAD-dependent deacetylase; Provisional | 100.0 | |
| cd01410 | 206 | SIRT7 SIRT7: Eukaryotic and prokaryotic group (cla | 100.0 | |
| cd01411 | 225 | SIR2H SIR2H: Uncharacterized prokaryotic Sir2 homo | 100.0 | |
| cd01412 | 224 | SIRT5_Af1_CobB SIRT5_Af1_CobB: Eukaryotic, archaea | 100.0 | |
| cd01407 | 218 | SIR2-fam SIR2 family of proteins includes silent i | 100.0 | |
| PTZ00410 | 349 | NAD-dependent SIR2; Provisional | 100.0 | |
| cd00296 | 222 | SIR2 SIR2 superfamily of proteins includes silent | 100.0 | |
| PF02146 | 178 | SIR2: Sir2 family; InterPro: IPR003000 These seque | 100.0 | |
| KOG2684 | 412 | consensus Sirtuin 5 and related class III sirtuins | 100.0 | |
| KOG1905 | 353 | consensus Class IV sirtuins (SIR2 family) [Chromat | 100.0 | |
| KOG2682 | 314 | consensus NAD-dependent histone deacetylases and c | 100.0 | |
| cd01406 | 242 | SIR2-like Sir2-like: Prokaryotic group of uncharac | 98.79 | |
| PF00205 | 137 | TPP_enzyme_M: Thiamine pyrophosphate enzyme, centr | 95.68 | |
| PRK07979 | 574 | acetolactate synthase 3 catalytic subunit; Validat | 93.29 | |
| PRK08979 | 572 | acetolactate synthase 3 catalytic subunit; Validat | 93.29 | |
| PRK07418 | 616 | acetolactate synthase 3 catalytic subunit; Reviewe | 93.15 | |
| PRK06882 | 574 | acetolactate synthase 3 catalytic subunit; Validat | 93.09 | |
| PRK05858 | 542 | hypothetical protein; Provisional | 92.77 | |
| PRK09107 | 595 | acetolactate synthase 3 catalytic subunit; Validat | 92.69 | |
| PRK06466 | 574 | acetolactate synthase 3 catalytic subunit; Validat | 92.65 | |
| TIGR01504 | 588 | glyox_carbo_lig glyoxylate carboligase. Glyoxylate | 92.59 | |
| PRK08322 | 547 | acetolactate synthase; Reviewed | 92.57 | |
| CHL00099 | 585 | ilvB acetohydroxyacid synthase large subunit | 92.56 | |
| PRK07789 | 612 | acetolactate synthase 1 catalytic subunit; Validat | 92.38 | |
| PRK08527 | 563 | acetolactate synthase 3 catalytic subunit; Validat | 92.35 | |
| PRK07524 | 535 | hypothetical protein; Provisional | 92.25 | |
| PLN02470 | 585 | acetolactate synthase | 92.24 | |
| COG0028 | 550 | IlvB Thiamine pyrophosphate-requiring enzymes [ace | 92.09 | |
| PRK06725 | 570 | acetolactate synthase 3 catalytic subunit; Validat | 92.09 | |
| PRK07282 | 566 | acetolactate synthase catalytic subunit; Reviewed | 91.91 | |
| TIGR00118 | 558 | acolac_lg acetolactate synthase, large subunit, bi | 91.73 | |
| PRK06048 | 561 | acetolactate synthase 3 catalytic subunit; Reviewe | 91.65 | |
| TIGR03254 | 554 | oxalate_oxc oxalyl-CoA decarboxylase. In a number | 91.57 | |
| TIGR00173 | 432 | menD 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohex | 91.51 | |
| PRK11269 | 591 | glyoxylate carboligase; Provisional | 91.36 | |
| PRK06154 | 565 | hypothetical protein; Provisional | 91.1 | |
| PRK06112 | 578 | acetolactate synthase catalytic subunit; Validated | 91.08 | |
| TIGR02418 | 539 | acolac_catab acetolactate synthase, catabolic. Ace | 91.08 | |
| PRK08155 | 564 | acetolactate synthase catalytic subunit; Validated | 91.03 | |
| PRK08978 | 548 | acetolactate synthase 2 catalytic subunit; Reviewe | 90.95 | |
| PRK08611 | 576 | pyruvate oxidase; Provisional | 90.94 | |
| PRK11032 | 160 | hypothetical protein; Provisional | 90.89 | |
| PRK06456 | 572 | acetolactate synthase catalytic subunit; Reviewed | 90.82 | |
| PRK06276 | 586 | acetolactate synthase catalytic subunit; Reviewed | 90.54 | |
| PRK08273 | 597 | thiamine pyrophosphate protein; Provisional | 90.51 | |
| PRK07525 | 588 | sulfoacetaldehyde acetyltransferase; Validated | 90.51 | |
| PRK06965 | 587 | acetolactate synthase 3 catalytic subunit; Validat | 90.45 | |
| PRK06546 | 578 | pyruvate dehydrogenase; Provisional | 90.4 | |
| PF07295 | 146 | DUF1451: Protein of unknown function (DUF1451); In | 90.29 | |
| PRK08266 | 542 | hypothetical protein; Provisional | 90.2 | |
| PRK09259 | 569 | putative oxalyl-CoA decarboxylase; Validated | 90.03 | |
| PRK08327 | 569 | acetolactate synthase catalytic subunit; Validated | 90.02 | |
| PRK07710 | 571 | acetolactate synthase catalytic subunit; Reviewed | 89.79 | |
| PRK08199 | 557 | thiamine pyrophosphate protein; Validated | 89.61 | |
| TIGR03457 | 579 | sulphoacet_xsc sulfoacetaldehyde acetyltransferase | 89.24 | |
| PRK09124 | 574 | pyruvate dehydrogenase; Provisional | 88.19 | |
| PRK08617 | 552 | acetolactate synthase; Reviewed | 87.93 | |
| cd02766 | 501 | MopB_3 The MopB_3 CD includes a group of related u | 87.93 | |
| TIGR02720 | 575 | pyruv_oxi_spxB pyruvate oxidase. Members of this f | 87.55 | |
| smart00834 | 41 | CxxC_CXXC_SSSS Putative regulatory protein. CxxC_C | 87.36 | |
| PRK07064 | 544 | hypothetical protein; Provisional | 87.12 | |
| cd02750 | 461 | MopB_Nitrate-R-NarG-like Respiratory nitrate reduc | 86.12 | |
| PLN02573 | 578 | pyruvate decarboxylase | 85.69 | |
| cd02765 | 567 | MopB_4 The MopB_4 CD includes a group of related u | 85.13 | |
| COG3383 | 978 | Uncharacterized anaerobic dehydrogenase [General f | 84.71 | |
| KOG1185 | 571 | consensus Thiamine pyrophosphate-requiring enzyme | 84.63 | |
| cd02759 | 477 | MopB_Acetylene-hydratase The MopB_Acetylene-hydrat | 84.05 | |
| cd02768 | 386 | MopB_NADH-Q-OR-NuoG2 MopB_NADH-Q-OR-NuoG2: The Nuo | 83.06 | |
| PRK06457 | 549 | pyruvate dehydrogenase; Provisional | 82.93 | |
| PRK07092 | 530 | benzoylformate decarboxylase; Reviewed | 82.86 | |
| PRK11916 | 312 | electron transfer flavoprotein subunit YdiR; Provi | 82.73 | |
| cd02753 | 512 | MopB_Formate-Dh-H Formate dehydrogenase H (Formate | 82.72 | |
| PF09723 | 42 | Zn-ribbon_8: Zinc ribbon domain; InterPro: IPR0134 | 82.6 | |
| PRK03363 | 313 | fixB putative electron transfer flavoprotein FixB; | 82.26 | |
| cd02752 | 649 | MopB_Formate-Dh-Na-like Formate dehydrogenase N, a | 81.59 | |
| cd00368 | 374 | Molybdopterin-Binding Molybdopterin-Binding (MopB) | 81.45 | |
| TIGR03479 | 912 | DMSO_red_II_alp DMSO reductase family type II enzy | 81.22 | |
| PRK07449 | 568 | 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1 | 81.17 | |
| cd02767 | 574 | MopB_ydeP The MopB_ydeP CD includes a group of rel | 80.87 | |
| TIGR03393 | 539 | indolpyr_decarb indolepyruvate decarboxylase, Erwi | 80.75 | |
| cd02755 | 454 | MopB_Thiosulfate-R-like The MopB_Thiosulfate-R-lik | 80.68 | |
| PLN00022 | 356 | electron transfer flavoprotein subunit alpha; Prov | 80.64 | |
| TIGR01553 | 1009 | formate-DH-alph formate dehydrogenase, alpha subun | 80.44 | |
| TIGR02098 | 38 | MJ0042_CXXC MJ0042 family finger-like domain. This | 80.15 |
| >KOG2683 consensus Sirtuin 4 and related class II sirtuins (SIR2 family) [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-73 Score=525.14 Aligned_cols=290 Identities=61% Similarity=1.013 Sum_probs=276.1
Q ss_pred CCCCCCCCCCCccccCCCCCCCCCCcchHHHHhc-------CCcEEEEECCcccccCCCCCcCCCC-cCcc-CCCCCCCh
Q 016025 81 SSRHEDKAPASPKVLRDKKAVPDADPPSIEDINQ-------FAKLIVLTGAGISTECGIPDYRSPN-GAYS-SGFKPITH 151 (396)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-------ak~IVvlTGAGISaaSGIPdFRs~~-Gl~~-~~~~p~~~ 151 (396)
++++++|.| ...+.+++.||+++|...+.|++ +++++|+|||||||+||||||||++ |+|. +.++|+++
T Consensus 6 ~l~~~s~~p--~s~~~~~k~VP~~~pl~e~~ikkl~~li~~~~rllvlTGAGISTEsGIPDYRS~~VGlYars~~kPI~h 83 (305)
T KOG2683|consen 6 SLGNESKAP--PSFLMARKYVPHADPLCEEDIKKLYRLIGTSDRLLVLTGAGISTESGIPDYRSEDVGLYARSAHKPIQH 83 (305)
T ss_pred ccccCCCCC--chhhhhccccCCCCCCCHHHHHHHHHHHccCCceEEEecCcccccCCCCcccCCCccceeecCCCcchH
Confidence 799999999 77889999999999998877764 8999999999999999999999999 9998 57899999
Q ss_pred HHHhhchhhHHHHHHHHHhhhhhcccCCCCHHHHHHHHHHHhCCCceeeecCccchHhhhCCCc-eeeccccceeeeCCC
Q 016025 152 QQFVRSSRARRRYWARSYAGWRRFMAAQPNPAHFALASLEKAGRIDCMITQNVDRLHHRAGSNP-LELHGTVYTVVCLDC 230 (396)
Q Consensus 152 ~~f~~~~~~~~~~w~~~~~~~~~~~~a~Pn~~H~aLa~Le~~g~l~~VITQNIDgLh~kAG~~~-iElHGsl~~~~C~~C 230 (396)
++|.++...+.+||+|.|.+|++|.+++||++|+||++||+.|+++++||||||+||.|||++. .|+||+...+.|..|
T Consensus 84 qdf~rSs~~RqRYWaRnf~gWprFs~aqPn~~H~ALs~wE~~~r~~wliTQNVD~LH~kAGS~~~tElHG~~~~VkCl~C 163 (305)
T KOG2683|consen 84 QDFVRSSRCRQRYWARNFVGWPRFSAAQPNPAHYALSKWEKAGRFQWLITQNVDRLHTKAGSRMVTELHGSAYQVKCLSC 163 (305)
T ss_pred HHHhhhhHHHHHHHHHhhcCcchhhhcCCCchhHHHHHHhhcCceEEEeeccchhhhhhccccceeeeccceEEEEeccc
Confidence 9999999999999999999999999999999999999999999999999999999999999998 999999999999999
Q ss_pred CcccchhhHHHHHHhhChhHHHHHhhhcCCCCCCCCCcCcccCCCCCcccccccccccCCCCcCCCCCCcccCcEEEcCC
Q 016025 231 GFSFCRDLFQDQVKALNPKWAEAIESLDYGSPGSDRSFGMKQRPDGDIEIDEKFWEEDFHIPTCQKCNGVLKPDVVFFGD 310 (396)
Q Consensus 231 ~~~~~~~~~~~~l~~~np~~~~~~~~l~~g~p~~~~s~~~~~~pd~d~~i~~~~~~~~~~iP~Cp~Cgg~LRP~VVlFGE 310 (396)
+...+|..++|+|..+||.|.++.++++ +++||+|++|++++ ++.+.||.|++|||.|||+|+||||
T Consensus 164 ~y~~~R~~~Qdrl~~~NP~fke~~~~~~------------~~~pDgDv~lpl~~-e~gF~IPeC~~CgG~lKpdV~fFGd 230 (305)
T KOG2683|consen 164 GYIEPRQTFQDRLKYLNPGFKEAIVSPG------------HQRPDGDVELPLEF-EEGFQIPECEKCGGLLKPDVTFFGD 230 (305)
T ss_pred CcccchHHHHHHHHhcCcchhhhccCcc------------ccCCCCCeecchhh-hhcccCCcccccCCccCCceEEecC
Confidence 9999999999999999999998865432 47899999999986 7789999999999999999999999
Q ss_pred CCCHHHHHHHHHHHhhCCeEEEEccCcchhhHHHHHHHHHHCCCeEEEEcCCCCCCCCcccEEEeCcHHHHHHHH
Q 016025 311 NVPKDRADKAMEAAKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVNVGETRADDLTTLKISARLGEILPRV 385 (396)
Q Consensus 311 ~lp~~~~~~a~~~~~~aDllLVvGTSl~V~pa~~Lv~~a~~~g~~lIiIN~~~t~~d~~a~l~I~~~a~evL~~L 385 (396)
+++.+..+.+.+.+++||-+||+||||.|+..++++..|+..+.++.|||+++|+.|+.++++|+.+|+|+|+++
T Consensus 231 nvn~dkv~~~~~~v~e~dg~LvlGsSL~v~Sg~r~i~~a~~~k~pi~IvNIGpTRaD~~a~lKl~~r~gdvl~~~ 305 (305)
T KOG2683|consen 231 NVNKDKVTFCMEKVKECDGFLVLGSSLMVLSGFRFIRHAHEKKKPIAIVNIGPTRADDMATLKLNYRIGEVLKEM 305 (305)
T ss_pred CCChHHHHHHHHHHhccCceEEechhHHHHHHHHHHHHHHhhcCcEEEEecCCcchhheeeeeecchHhhhhhcC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999864
|
|
| >cd01409 SIRT4 SIRT4: Eukaryotic and prokaryotic group (class2) which includes human sirtuin SIRT4 and several bacterial homologs; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation | Back alignment and domain information |
|---|
| >PRK05333 NAD-dependent deacetylase; Provisional | Back alignment and domain information |
|---|
| >PRK14138 NAD-dependent deacetylase; Provisional | Back alignment and domain information |
|---|
| >PTZ00409 Sir2 (Silent Information Regulator) protein; Provisional | Back alignment and domain information |
|---|
| >COG0846 SIR2 NAD-dependent protein deacetylases, SIR2 family [Transcription] | Back alignment and domain information |
|---|
| >cd01413 SIR2_Af2 SIR2_Af2: Archaeal and prokaryotic group which includes Archaeoglobus fulgidus Sir2-Af2, Sulfolobus solfataricus ssSir2, and several bacterial homologs; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation | Back alignment and domain information |
|---|
| >cd01408 SIRT1 SIRT1: Eukaryotic group (class1) which includes human sirtuins SIRT1-3 and yeast Hst1-4; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation | Back alignment and domain information |
|---|
| >PRK00481 NAD-dependent deacetylase; Provisional | Back alignment and domain information |
|---|
| >PTZ00408 NAD-dependent deacetylase; Provisional | Back alignment and domain information |
|---|
| >cd01410 SIRT7 SIRT7: Eukaryotic and prokaryotic group (class4) which includes human sirtuin SIRT6, SIRT7, and several bacterial homologs; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation | Back alignment and domain information |
|---|
| >cd01411 SIR2H SIR2H: Uncharacterized prokaryotic Sir2 homologs from several gram positive bacterial species and Fusobacteria; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation | Back alignment and domain information |
|---|
| >cd01412 SIRT5_Af1_CobB SIRT5_Af1_CobB: Eukaryotic, archaeal and prokaryotic group (class3) which includes human sirtuin SIRT5, Archaeoglobus fulgidus Sir2-Af1, and E | Back alignment and domain information |
|---|
| >cd01407 SIR2-fam SIR2 family of proteins includes silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation, where the acetyl group from the lysine epsilon-amino group is transferred to the ADP-ribose moiety of NAD+, producing nicotinamide and the novel metabolite O-acetyl-ADP-ribose | Back alignment and domain information |
|---|
| >PTZ00410 NAD-dependent SIR2; Provisional | Back alignment and domain information |
|---|
| >cd00296 SIR2 SIR2 superfamily of proteins includes silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation, where the acetyl group from the lysine epsilon-amino group is transferred to the ADP-ribose moiety of NAD+, producing nicotinamide and the novel metabolite O-acetyl-ADP-ribose | Back alignment and domain information |
|---|
| >PF02146 SIR2: Sir2 family; InterPro: IPR003000 These sequences represent the Sirtuin (Sir2-related) family of NAD+-dependent deacetylases | Back alignment and domain information |
|---|
| >KOG2684 consensus Sirtuin 5 and related class III sirtuins (SIR2 family) [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
| >KOG1905 consensus Class IV sirtuins (SIR2 family) [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
| >KOG2682 consensus NAD-dependent histone deacetylases and class I sirtuins (SIR2 family) [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
| >cd01406 SIR2-like Sir2-like: Prokaryotic group of uncharacterized Sir2-like proteins which lack certain key catalytic residues and conserved zinc binding cysteines; and are members of the SIR2 superfamily of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation | Back alignment and domain information |
|---|
| >PF00205 TPP_enzyme_M: Thiamine pyrophosphate enzyme, central domain; InterPro: IPR012000 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor | Back alignment and domain information |
|---|
| >PRK07979 acetolactate synthase 3 catalytic subunit; Validated | Back alignment and domain information |
|---|
| >PRK08979 acetolactate synthase 3 catalytic subunit; Validated | Back alignment and domain information |
|---|
| >PRK07418 acetolactate synthase 3 catalytic subunit; Reviewed | Back alignment and domain information |
|---|
| >PRK06882 acetolactate synthase 3 catalytic subunit; Validated | Back alignment and domain information |
|---|
| >PRK05858 hypothetical protein; Provisional | Back alignment and domain information |
|---|
| >PRK09107 acetolactate synthase 3 catalytic subunit; Validated | Back alignment and domain information |
|---|
| >PRK06466 acetolactate synthase 3 catalytic subunit; Validated | Back alignment and domain information |
|---|
| >TIGR01504 glyox_carbo_lig glyoxylate carboligase | Back alignment and domain information |
|---|
| >PRK08322 acetolactate synthase; Reviewed | Back alignment and domain information |
|---|
| >CHL00099 ilvB acetohydroxyacid synthase large subunit | Back alignment and domain information |
|---|
| >PRK07789 acetolactate synthase 1 catalytic subunit; Validated | Back alignment and domain information |
|---|
| >PRK08527 acetolactate synthase 3 catalytic subunit; Validated | Back alignment and domain information |
|---|
| >PRK07524 hypothetical protein; Provisional | Back alignment and domain information |
|---|
| >PLN02470 acetolactate synthase | Back alignment and domain information |
|---|
| >COG0028 IlvB Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] [Amino acid transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
| >PRK06725 acetolactate synthase 3 catalytic subunit; Validated | Back alignment and domain information |
|---|
| >PRK07282 acetolactate synthase catalytic subunit; Reviewed | Back alignment and domain information |
|---|
| >TIGR00118 acolac_lg acetolactate synthase, large subunit, biosynthetic type | Back alignment and domain information |
|---|
| >PRK06048 acetolactate synthase 3 catalytic subunit; Reviewed | Back alignment and domain information |
|---|
| >TIGR03254 oxalate_oxc oxalyl-CoA decarboxylase | Back alignment and domain information |
|---|
| >TIGR00173 menD 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase | Back alignment and domain information |
|---|
| >PRK11269 glyoxylate carboligase; Provisional | Back alignment and domain information |
|---|
| >PRK06154 hypothetical protein; Provisional | Back alignment and domain information |
|---|
| >PRK06112 acetolactate synthase catalytic subunit; Validated | Back alignment and domain information |
|---|
| >TIGR02418 acolac_catab acetolactate synthase, catabolic | Back alignment and domain information |
|---|
| >PRK08155 acetolactate synthase catalytic subunit; Validated | Back alignment and domain information |
|---|
| >PRK08978 acetolactate synthase 2 catalytic subunit; Reviewed | Back alignment and domain information |
|---|
| >PRK08611 pyruvate oxidase; Provisional | Back alignment and domain information |
|---|
| >PRK11032 hypothetical protein; Provisional | Back alignment and domain information |
|---|
| >PRK06456 acetolactate synthase catalytic subunit; Reviewed | Back alignment and domain information |
|---|
| >PRK06276 acetolactate synthase catalytic subunit; Reviewed | Back alignment and domain information |
|---|
| >PRK08273 thiamine pyrophosphate protein; Provisional | Back alignment and domain information |
|---|
| >PRK07525 sulfoacetaldehyde acetyltransferase; Validated | Back alignment and domain information |
|---|
| >PRK06965 acetolactate synthase 3 catalytic subunit; Validated | Back alignment and domain information |
|---|
| >PRK06546 pyruvate dehydrogenase; Provisional | Back alignment and domain information |
|---|
| >PF07295 DUF1451: Protein of unknown function (DUF1451); InterPro: IPR009912 This family consists of several hypothetical bacterial proteins of around 160 residues in length | Back alignment and domain information |
|---|
| >PRK08266 hypothetical protein; Provisional | Back alignment and domain information |
|---|
| >PRK09259 putative oxalyl-CoA decarboxylase; Validated | Back alignment and domain information |
|---|
| >PRK08327 acetolactate synthase catalytic subunit; Validated | Back alignment and domain information |
|---|
| >PRK07710 acetolactate synthase catalytic subunit; Reviewed | Back alignment and domain information |
|---|
| >PRK08199 thiamine pyrophosphate protein; Validated | Back alignment and domain information |
|---|
| >TIGR03457 sulphoacet_xsc sulfoacetaldehyde acetyltransferase | Back alignment and domain information |
|---|
| >PRK09124 pyruvate dehydrogenase; Provisional | Back alignment and domain information |
|---|
| >PRK08617 acetolactate synthase; Reviewed | Back alignment and domain information |
|---|
| >cd02766 MopB_3 The MopB_3 CD includes a group of related uncharacterized bacterial and archaeal molybdopterin-binding oxidoreductase-like domains with a putative N-terminal iron-sulfur [4Fe-4S] cluster binding site and molybdopterin cofactor binding site | Back alignment and domain information |
|---|
| >TIGR02720 pyruv_oxi_spxB pyruvate oxidase | Back alignment and domain information |
|---|
| >smart00834 CxxC_CXXC_SSSS Putative regulatory protein | Back alignment and domain information |
|---|
| >PRK07064 hypothetical protein; Provisional | Back alignment and domain information |
|---|
| >cd02750 MopB_Nitrate-R-NarG-like Respiratory nitrate reductase A (NarGHI), alpha chain (NarG) and related proteins | Back alignment and domain information |
|---|
| >PLN02573 pyruvate decarboxylase | Back alignment and domain information |
|---|
| >cd02765 MopB_4 The MopB_4 CD includes a group of related uncharacterized bacterial and archaeal molybdopterin-binding oxidoreductase-like domains with a putative N-terminal iron-sulfur [4Fe-4S] cluster binding site and molybdopterin cofactor binding site | Back alignment and domain information |
|---|
| >COG3383 Uncharacterized anaerobic dehydrogenase [General function prediction only] | Back alignment and domain information |
|---|
| >KOG1185 consensus Thiamine pyrophosphate-requiring enzyme [Amino acid transport and metabolism; Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
| >cd02759 MopB_Acetylene-hydratase The MopB_Acetylene-hydratase CD contains acetylene hydratase (Ahy) and other related proteins | Back alignment and domain information |
|---|
| >cd02768 MopB_NADH-Q-OR-NuoG2 MopB_NADH-Q-OR-NuoG2: The NuoG/Nad11/75-kDa subunit (second domain) of the NADH-quinone oxidoreductase (NADH-Q-OR)/respiratory complex I/NADH dehydrogenase-1 (NDH-1) | Back alignment and domain information |
|---|
| >PRK06457 pyruvate dehydrogenase; Provisional | Back alignment and domain information |
|---|
| >PRK07092 benzoylformate decarboxylase; Reviewed | Back alignment and domain information |
|---|
| >PRK11916 electron transfer flavoprotein subunit YdiR; Provisional | Back alignment and domain information |
|---|
| >cd02753 MopB_Formate-Dh-H Formate dehydrogenase H (Formate-Dh-H) catalyzes the reversible oxidation of formate to CO2 with the release of a proton and two electrons | Back alignment and domain information |
|---|
| >PF09723 Zn-ribbon_8: Zinc ribbon domain; InterPro: IPR013429 This entry represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria | Back alignment and domain information |
|---|
| >PRK03363 fixB putative electron transfer flavoprotein FixB; Provisional | Back alignment and domain information |
|---|
| >cd02752 MopB_Formate-Dh-Na-like Formate dehydrogenase N, alpha subunit (Formate-Dh-Na) is a major component of nitrate respiration in bacteria such as in the E | Back alignment and domain information |
|---|
| >cd00368 Molybdopterin-Binding Molybdopterin-Binding (MopB) domain of the MopB superfamily of proteins, a large, diverse, heterogeneous superfamily of enzymes that, in general, bind molybdopterin as a cofactor | Back alignment and domain information |
|---|
| >TIGR03479 DMSO_red_II_alp DMSO reductase family type II enzyme, molybdopterin subunit | Back alignment and domain information |
|---|
| >PRK07449 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase; Validated | Back alignment and domain information |
|---|
| >cd02767 MopB_ydeP The MopB_ydeP CD includes a group of related uncharacterized bacterial molybdopterin-binding oxidoreductase-like domains with a putative molybdopterin cofactor binding site | Back alignment and domain information |
|---|
| >TIGR03393 indolpyr_decarb indolepyruvate decarboxylase, Erwinia family | Back alignment and domain information |
|---|
| >cd02755 MopB_Thiosulfate-R-like The MopB_Thiosulfate-R-like CD contains thiosulfate-, sulfur-, and polysulfide-reductases, and other related proteins | Back alignment and domain information |
|---|
| >PLN00022 electron transfer flavoprotein subunit alpha; Provisional | Back alignment and domain information |
|---|
| >TIGR01553 formate-DH-alph formate dehydrogenase, alpha subunit, proteobacterial-type | Back alignment and domain information |
|---|
| >TIGR02098 MJ0042_CXXC MJ0042 family finger-like domain | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 396 | ||||
| 1ma3_A | 253 | Structure Of A Sir2 Enzyme Bound To An Acetylated P | 6e-36 | ||
| 1yc5_A | 246 | Sir2-P53 Peptide-Nicotinamide Length = 246 | 1e-34 | ||
| 2h4h_A | 246 | Sir2 H116y Mutant-P53 Peptide-Nad Length = 246 | 4e-34 | ||
| 2h59_A | 246 | Sir2 H116a-Deacetylated P53 Peptide-3'-O-Acetyl Adp | 1e-33 | ||
| 1ici_A | 256 | Crystal Structure Of A Sir2 Homolog-Nad Complex Len | 1e-26 | ||
| 1m2g_A | 249 | Sir2 Homologue-Adp Ribose Complex Length = 249 | 1e-26 | ||
| 1m2h_A | 249 | Sir2 Homologue S24a Mutant-adp Ribose Complex Lengt | 2e-26 | ||
| 1m2j_A | 249 | Sir2 Homologue H80n Mutant-Adp Ribose Complex Lengt | 8e-26 | ||
| 1m2k_A | 249 | Sir2 Homologue F159a Mutant-Adp Ribose Complex Leng | 1e-25 | ||
| 1m2n_A | 249 | Sir2 Homologues (D102gF159AR170A) MUTANT-2'-O-Acety | 3e-25 | ||
| 3pki_A | 355 | Human Sirt6 Crystal Structure In Complex With Adp R | 2e-19 | ||
| 3k35_A | 318 | Crystal Structure Of Human Sirt6 Length = 318 | 3e-19 | ||
| 3u31_A | 290 | Plasmodium Falciparum Sir2a Preferentially Hydrolyz | 2e-17 | ||
| 3rig_A | 273 | Sirt5 Is An Nad-Dependent Protein Lysine Demalonyla | 2e-17 | ||
| 4hda_A | 275 | Crystal Structure Of Human Sirt5 In Complex With Fl | 2e-17 | ||
| 2nyr_A | 271 | Crystal Structure Of Human Sirtuin Homolog 5 In Com | 2e-17 | ||
| 4g1c_A | 267 | Human Sirt5 Bound To Succ-Idh2 And Carba-Nad Length | 2e-17 | ||
| 2b4y_A | 271 | Crystal Structure Of Human Sirtuin Homolog 5 Length | 3e-17 | ||
| 3jwp_A | 265 | Crystal Structure Of Plasmodium Falciparum Sir2a (P | 2e-16 | ||
| 4iao_A | 492 | Crystal Structure Of Sir2 C543s Mutant In Complex W | 9e-14 | ||
| 2hjh_A | 354 | Crystal Structure Of The Sir2 Deacetylase Length = | 3e-13 | ||
| 4fvt_A | 274 | Human Sirt3 Bound To Ac-Acs Peptide And Carba-Nad L | 1e-12 | ||
| 4hd8_A | 284 | Crystal Structure Of Human Sirt3 In Complex With Fl | 2e-12 | ||
| 3glr_A | 285 | Crystal Structure Of Human Sirt3 With Acetyl-Lysine | 2e-12 | ||
| 4i5i_A | 287 | Crystal Structure Of The Sirt1 Catalytic Domain Bou | 3e-12 | ||
| 1j8f_A | 323 | Human Sirt2 Histone Deacetylase Length = 323 | 3e-11 | ||
| 1j8f_C | 323 | Human Sirt2 Histone Deacetylase Length = 323 | 4e-11 | ||
| 1s5p_A | 235 | Structure And Substrate Binding Properties Of Cobb, | 1e-09 | ||
| 2od7_A | 308 | Crystal Structure Of Yhst2 Bound To The Intermediat | 2e-08 | ||
| 1szc_A | 297 | Structural Basis For Nicotinamide Cleavage And Adp- | 2e-08 | ||
| 1q1a_A | 289 | Structure Of The Yeast Hst2 Protein Deacetylase In | 2e-08 | ||
| 1q14_A | 361 | Structure And Autoregulation Of The Yeast Hst2 Homo | 2e-08 | ||
| 1q17_A | 300 | Structure Of The Yeast Hst2 Protein Deacetylase In | 2e-08 | ||
| 2od2_A | 308 | Crystal Structure Of Yhst2 I117f Mutant Bound To Ca | 4e-08 |
| >pdb|1MA3|A Chain A, Structure Of A Sir2 Enzyme Bound To An Acetylated P53 Peptide Length = 253 | Back alignment and structure |
|
| >pdb|1YC5|A Chain A, Sir2-P53 Peptide-Nicotinamide Length = 246 | Back alignment and structure |
| >pdb|2H4H|A Chain A, Sir2 H116y Mutant-P53 Peptide-Nad Length = 246 | Back alignment and structure |
| >pdb|2H59|A Chain A, Sir2 H116a-Deacetylated P53 Peptide-3'-O-Acetyl Adp Ribose Length = 246 | Back alignment and structure |
| >pdb|1ICI|A Chain A, Crystal Structure Of A Sir2 Homolog-Nad Complex Length = 256 | Back alignment and structure |
| >pdb|1M2G|A Chain A, Sir2 Homologue-Adp Ribose Complex Length = 249 | Back alignment and structure |
| >pdb|1M2H|A Chain A, Sir2 Homologue S24a Mutant-adp Ribose Complex Length = 249 | Back alignment and structure |
| >pdb|1M2J|A Chain A, Sir2 Homologue H80n Mutant-Adp Ribose Complex Length = 249 | Back alignment and structure |
| >pdb|1M2K|A Chain A, Sir2 Homologue F159a Mutant-Adp Ribose Complex Length = 249 | Back alignment and structure |
| >pdb|1M2N|A Chain A, Sir2 Homologues (D102gF159AR170A) MUTANT-2'-O-Acetyl Adp Ribose Complex Length = 249 | Back alignment and structure |
| >pdb|3PKI|A Chain A, Human Sirt6 Crystal Structure In Complex With Adp Ribose Length = 355 | Back alignment and structure |
| >pdb|3K35|A Chain A, Crystal Structure Of Human Sirt6 Length = 318 | Back alignment and structure |
| >pdb|3U31|A Chain A, Plasmodium Falciparum Sir2a Preferentially Hydrolyzes Medium And Long Chain Fatty Acyl Lysine Length = 290 | Back alignment and structure |
| >pdb|3RIG|A Chain A, Sirt5 Is An Nad-Dependent Protein Lysine Demalonylase And Desuccinylase Length = 273 | Back alignment and structure |
| >pdb|4HDA|A Chain A, Crystal Structure Of Human Sirt5 In Complex With Fluor-de-lys Peptide And Resveratrol Length = 275 | Back alignment and structure |
| >pdb|2NYR|A Chain A, Crystal Structure Of Human Sirtuin Homolog 5 In Complex With Suramin Length = 271 | Back alignment and structure |
| >pdb|4G1C|A Chain A, Human Sirt5 Bound To Succ-Idh2 And Carba-Nad Length = 267 | Back alignment and structure |
| >pdb|2B4Y|A Chain A, Crystal Structure Of Human Sirtuin Homolog 5 Length = 271 | Back alignment and structure |
| >pdb|3JWP|A Chain A, Crystal Structure Of Plasmodium Falciparum Sir2a (Pf13_0152) In Complex With Amp Length = 265 | Back alignment and structure |
| >pdb|4IAO|A Chain A, Crystal Structure Of Sir2 C543s Mutant In Complex With Sid Domain Of Sir4 Length = 492 | Back alignment and structure |
| >pdb|2HJH|A Chain A, Crystal Structure Of The Sir2 Deacetylase Length = 354 | Back alignment and structure |
| >pdb|4FVT|A Chain A, Human Sirt3 Bound To Ac-Acs Peptide And Carba-Nad Length = 274 | Back alignment and structure |
| >pdb|4HD8|A Chain A, Crystal Structure Of Human Sirt3 In Complex With Fluor-de-lys Peptide And Piceatannol Length = 284 | Back alignment and structure |
| >pdb|3GLR|A Chain A, Crystal Structure Of Human Sirt3 With Acetyl-Lysine Acecs2 Peptide Length = 285 | Back alignment and structure |
| >pdb|4I5I|A Chain A, Crystal Structure Of The Sirt1 Catalytic Domain Bound To Nad And An Ex527 Analog Length = 287 | Back alignment and structure |
| >pdb|1J8F|A Chain A, Human Sirt2 Histone Deacetylase Length = 323 | Back alignment and structure |
| >pdb|1J8F|C Chain C, Human Sirt2 Histone Deacetylase Length = 323 | Back alignment and structure |
| >pdb|1S5P|A Chain A, Structure And Substrate Binding Properties Of Cobb, A Sir2 Homolog Protein Deacetylase From Eschericia Coli Length = 235 | Back alignment and structure |
| >pdb|2OD7|A Chain A, Crystal Structure Of Yhst2 Bound To The Intermediate Analogue Adp-Hpd, And And Aceylated H4 Peptide Length = 308 | Back alignment and structure |
| >pdb|1SZC|A Chain A, Structural Basis For Nicotinamide Cleavage And Adp-Ribose Transfer By Nad+-Dependent Sir2 HistonePROTEIN DEACETYLASES Length = 297 | Back alignment and structure |
| >pdb|1Q1A|A Chain A, Structure Of The Yeast Hst2 Protein Deacetylase In Ternary Complex With 2'-O-Acetyl Adp Ribose And Histone Peptide Length = 289 | Back alignment and structure |
| >pdb|1Q14|A Chain A, Structure And Autoregulation Of The Yeast Hst2 Homolog Of Sir2 Length = 361 | Back alignment and structure |
| >pdb|1Q17|A Chain A, Structure Of The Yeast Hst2 Protein Deacetylase In Ternary Complex With 2'-O-Acetyl Adp Ribose And Histone Peptide Length = 300 | Back alignment and structure |
| >pdb|2OD2|A Chain A, Crystal Structure Of Yhst2 I117f Mutant Bound To Carba-Nad+ And An Acetylated H4 Peptide Length = 308 | Back alignment and structure |
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3riy_A NAD-dependent deacetylase sirtuin-5; desuccinylase, demalonylase, posttranslational modification, binding domain, rossmann fold domain; HET: SLL NAD; 1.55A {Homo sapiens} PDB: 3rig_A* 2b4y_A* 2nyr_A* Length = 273 | Back alignment and structure |
|---|
Score = 316 bits (811), Expect = e-107
Identities = 71/295 (24%), Positives = 113/295 (38%), Gaps = 42/295 (14%)
Query: 106 PPSIEDINQFAKLI-------VLTGAGISTECGIPDYRSPNGAYSSGFKPITHQQFVRSS 158
PS + F K +++GAG+S E G+P +R G + ++ + +
Sbjct: 6 RPS-SSMADFRKFFAKAKHIVIISGAGVSAESGVPTFRGAGGYWR-KWQAQDLATPLAFA 63
Query: 159 RARRRYWARSYAGWRRFMAAQPNPAHFALASLE----KAGRIDCMITQNVDRLHHRAGS- 213
R W + + +PN H A+A E K GR +ITQN+D LH +AG+
Sbjct: 64 HNPSRVWEFYHYRREVMGSKEPNAGHRAIAECETRLGKQGRRVVVITQNIDELHRKAGTK 123
Query: 214 NPLELHGTVYTVVCLDCGFSFCRDLFQDQVKALNPKWAEAIESLDYGSPGSDRSFGMKQR 273
N LE+HG+++ C CG +P K
Sbjct: 124 NLLEIHGSLFKTRCTSCGVVAEN--------YKSPICPA---------------LSGKGA 160
Query: 274 PDGDIEIDEKFWEEDFHIPTCQK--CNGVLKPDVVFFGDNVPKDRADKAMEAAKECDAFL 331
P+ + +P C++ C G+L+P VV+FG+N+ ++ CD L
Sbjct: 161 PEPGTQDAS---IPVEKLPRCEEAGCGGLLRPHVVWFGENLDPAILEEVDRELAHCDLCL 217
Query: 332 VLGSSLMTMSAYRLVRAAHEAGSTIAIVNVGETRADDLTTLKISARLGEILPRVL 386
V+G+S + A G +A N T A + G LP L
Sbjct: 218 VVGTSSVVYPAAMFAPQVAARGVPVAEFNTETTPATNRFRFHFQGPCGTTLPEAL 272
|
| >1yc5_A NAD-dependent deacetylase; SIR2, sirtuin, SIR2TM, SIRT1, nicotinamide, hydrolase; HET: ALY; 1.40A {Thermotoga maritima} SCOP: c.31.1.5 PDB: 2h2d_A* 2h2f_A 2h2g_A* 2h2h_A* 2h2i_A* 2h4f_A* 2h4j_A* 3d4b_A* 3d81_A* 3pdh_A* 2h4h_A* 3jr3_A* 2h59_A* Length = 246 | Back alignment and structure |
|---|
| >3u31_A SIR2A, transcriptional regulatory protein SIR2 homologue; Zn-binding domain, rossmann fold domain; HET: MYK NAD; 2.20A {Plasmodium falciparum} PDB: 3u3d_A* 3jwp_A* Length = 290 | Back alignment and structure |
|---|
| >1ma3_A SIR2-AF2, transcriptional regulatory protein, SIR2 family; enzyme-substrate complex, protein binding, transcription; HET: ALY MES; 2.00A {Archaeoglobus fulgidus} SCOP: c.31.1.5 PDB: 1s7g_A* 1yc2_A* Length = 253 | Back alignment and structure |
|---|
| >3k35_A NAD-dependent deacetylase sirtuin-6; rossmann fold, Zn-binding domain, structural genomics, struc genomics consortium, SGC, ADP-ribosylation; HET: APR; 2.00A {Homo sapiens} Length = 318 | Back alignment and structure |
|---|
| >3pki_A NAD-dependent deacetylase sirtuin-6; ADP ribose, structural genomics, structural genomics consortium, SGC, hydrolase; HET: AR6; 2.04A {Homo sapiens} PDB: 3pkj_A* Length = 355 | Back alignment and structure |
|---|
| >2hjh_A NAD-dependent histone deacetylase SIR2; protein, sirtuin, acetyl-ADP-ribose, nicotinamide, hydrolase; HET: XYQ; 1.85A {Saccharomyces cerevisiae} Length = 354 | Back alignment and structure |
|---|
| >1m2k_A Silent information regulator 2; protein-ligand complex, gene regulation; HET: APR; 1.47A {Archaeoglobus fulgidus} SCOP: c.31.1.5 PDB: 1m2g_A* 1m2h_A* 1m2j_A* 1m2n_A* 1ici_A* Length = 249 | Back alignment and structure |
|---|
| >1s5p_A NAD-dependent deacetylase; protein deacetylase, SIR2 homologue, hydrolase; HET: ALY; 1.96A {Escherichia coli} SCOP: c.31.1.5 Length = 235 | Back alignment and structure |
|---|
| >3glr_A NAD-dependent deacetylase sirtuin-3, mitochondria; NAD dependent deacetylase, sirtuin, substrate peptide comple hydrolase, metal-binding; HET: ALY; 1.80A {Homo sapiens} PDB: 3gls_A 3glt_A* 3glu_A Length = 285 | Back alignment and structure |
|---|
| >1q1a_A HST2 protein; ternary complex, histone deacetylase, 2'-O-ADP ribose,, gene regulation; HET: ALY OAD; 1.50A {Saccharomyces cerevisiae} SCOP: c.31.1.5 PDB: 1szd_A* 1szc_A* 2od7_A* 2od9_A* 2qqf_A* 2qqg_A* 1q17_A* 2od2_A* Length = 289 | Back alignment and structure |
|---|
| >1j8f_A SIRT2, sirtuin 2, isoform 1, silencing INFO; gene regulation, transferase; 1.70A {Homo sapiens} SCOP: c.31.1.5 Length = 323 | Back alignment and structure |
|---|
| >1q14_A HST2 protein; histone deacetylase, hydrolase; 2.50A {Saccharomyces cerevisiae} SCOP: c.31.1.5 Length = 361 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 396 | |||
| 1yc5_A | 246 | NAD-dependent deacetylase; SIR2, sirtuin, SIR2TM, | 100.0 | |
| 1ma3_A | 253 | SIR2-AF2, transcriptional regulatory protein, SIR2 | 100.0 | |
| 1m2k_A | 249 | Silent information regulator 2; protein-ligand com | 100.0 | |
| 3riy_A | 273 | NAD-dependent deacetylase sirtuin-5; desuccinylase | 100.0 | |
| 3u31_A | 290 | SIR2A, transcriptional regulatory protein SIR2 hom | 100.0 | |
| 1s5p_A | 235 | NAD-dependent deacetylase; protein deacetylase, SI | 100.0 | |
| 1q1a_A | 289 | HST2 protein; ternary complex, histone deacetylase | 100.0 | |
| 3k35_A | 318 | NAD-dependent deacetylase sirtuin-6; rossmann fold | 100.0 | |
| 3glr_A | 285 | NAD-dependent deacetylase sirtuin-3, mitochondria; | 100.0 | |
| 2hjh_A | 354 | NAD-dependent histone deacetylase SIR2; protein, s | 100.0 | |
| 3pki_A | 355 | NAD-dependent deacetylase sirtuin-6; ADP ribose, s | 100.0 | |
| 4iao_A | 492 | NAD-dependent histone deacetylase SIR2; protein co | 100.0 | |
| 1j8f_A | 323 | SIRT2, sirtuin 2, isoform 1, silencing INFO; gene | 100.0 | |
| 1q14_A | 361 | HST2 protein; histone deacetylase, hydrolase; 2.50 | 100.0 | |
| 3lq1_A | 578 | 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- | 91.83 | |
| 2iht_A | 573 | Carboxyethylarginine synthase; thiamin diphosphate | 91.11 | |
| 3hww_A | 556 | 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- | 90.06 | |
| 1ozh_A | 566 | ALS, acetolactate synthase, catabolic; acetohydrox | 89.89 | |
| 3eya_A | 549 | Pyruvate dehydrogenase [cytochrome]; pyruvate oxid | 89.64 | |
| 2x7j_A | 604 | 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene - | 89.62 | |
| 1ybh_A | 590 | Acetolactate synthase, chloroplast; acetohydroxyac | 89.44 | |
| 4feg_A | 603 | Pyruvate oxidase; carbanion, structure activity re | 89.36 | |
| 2c31_A | 568 | Oxalyl-COA decarboxylase; oxalate, thiamin diphosp | 88.9 | |
| 2pgn_A | 589 | Cyclohexane-1,2-dione hydrolase (CDH); three alpha | 88.12 | |
| 2pan_A | 616 | Glyoxylate carboligase; thiamin-diphosphate (THDP) | 87.55 | |
| 2q28_A | 564 | Oxalyl-COA decarboxylase; lyase, oxalate degradati | 87.38 | |
| 1o97_D | 320 | Electron transferring flavoprotein alpha-subunit; | 86.52 | |
| 1v5e_A | 590 | Pyruvate oxidase; oxidoreductase, flavoprotein; HE | 86.42 | |
| 1t9b_A | 677 | Acetolactate synthase, mitochondrial; acetohydroxy | 84.39 | |
| 2lcq_A | 165 | Putative toxin VAPC6; PIN domain, Zn ribbon domain | 83.87 | |
| 2uz1_A | 563 | Benzaldehyde lyase; thiamine diphosphate, thiamine | 80.94 |
| >1yc5_A NAD-dependent deacetylase; SIR2, sirtuin, SIR2TM, SIRT1, nicotinamide, hydrolase; HET: ALY; 1.40A {Thermotoga maritima} SCOP: c.31.1.5 PDB: 2h2d_A* 2h2f_A 2h2g_A* 2h2h_A* 2h2i_A* 2h4f_A* 2h4j_A* 3d4b_A* 3d81_A* 3pdh_A* 2h4h_A* 3jr3_A* 2h59_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.5e-65 Score=484.64 Aligned_cols=239 Identities=37% Similarity=0.647 Sum_probs=205.8
Q ss_pred chHHHHhcCCcEEEEECCcccccCCCCCcCCCCcCccCCCC--CCChHHHhhchhhHHHHHHHHHhhhhhcccCCCCHHH
Q 016025 107 PSIEDINQFAKLIVLTGAGISTECGIPDYRSPNGAYSSGFK--PITHQQFVRSSRARRRYWARSYAGWRRFMAAQPNPAH 184 (396)
Q Consensus 107 ~~~~~i~~ak~IVvlTGAGISaaSGIPdFRs~~Gl~~~~~~--p~~~~~f~~~~~~~~~~w~~~~~~~~~~~~a~Pn~~H 184 (396)
.+.++|++|++|||+|||||||+||||||||++|+|+. |. .++.+.|.++|+.+|.||.+.+. .+.+++||.+|
T Consensus 5 ~l~~~l~~a~~ivv~tGAGiS~~SGIpdfR~~~Glw~~-~~~~~~~~~~f~~~p~~~~~~~~~~~~---~~~~~~Pn~~H 80 (246)
T 1yc5_A 5 EFLDLLNESRLTVTLTGAGISTPSGIPDFRGPNGIYKK-YSQNVFDIDFFYSHPEEFYRFAKEGIF---PMLQAKPNLAH 80 (246)
T ss_dssp HHHHHHHHCSSEEEEECGGGTGGGTCCCC------------CCTTBHHHHHHCHHHHHHHHHHHTG---GGGGCCCCHHH
T ss_pred HHHHHHHhCCCEEEEECceeehhhCCCCccCCCccccc-CCCceecHHHHhhCHHHHHHHHHHHHH---HhccCCCCHHH
Confidence 46788999999999999999999999999999999984 54 46788899999988888875533 34589999999
Q ss_pred HHHHHHHHhCCCceeeecCccchHhhhCCCc-eeeccccceeeeCCCCcccchhhHHHHHHhhChhHHHHHhhhcCCCCC
Q 016025 185 FALASLEKAGRIDCMITQNVDRLHHRAGSNP-LELHGTVYTVVCLDCGFSFCRDLFQDQVKALNPKWAEAIESLDYGSPG 263 (396)
Q Consensus 185 ~aLa~Le~~g~l~~VITQNIDgLh~kAG~~~-iElHGsl~~~~C~~C~~~~~~~~~~~~l~~~np~~~~~~~~l~~g~p~ 263 (396)
++|++|+++|++.+||||||||||++||+++ +|+||++++.+|+.|++.|+.+.+.+.+
T Consensus 81 ~~La~L~~~g~~~~viTQNvD~Lh~~AG~~~v~elHG~~~~~~C~~C~~~~~~~~~~~~~-------------------- 140 (246)
T 1yc5_A 81 VLLAKLEEKGLIEAVITQNIDRLHQRAGSKKVIELHGNVEEYYCVRCEKKYTVEDVIKKL-------------------- 140 (246)
T ss_dssp HHHHHHHHTTSCSEEEECCCSCHHHHTTCSCEEETTEEEEEEEETTTCCEEEHHHHHHHT--------------------
T ss_pred HHHHHHHhcCCCceEEeccccchHhHcCCCcEEEecCccceeEcCCCCCCCcHHHHHHHh--------------------
Confidence 9999999999999999999999999999998 9999999999999999988765432110
Q ss_pred CCCCcCcccCCCCCcccccccccccCCCCcCCCCCCcccCcEEEcCCCCCHHHHHHHHHHHhhCCeEEEEccCcchhhHH
Q 016025 264 SDRSFGMKQRPDGDIEIDEKFWEEDFHIPTCQKCNGVLKPDVVFFGDNVPKDRADKAMEAAKECDAFLVLGSSLMTMSAY 343 (396)
Q Consensus 264 ~~~s~~~~~~pd~d~~i~~~~~~~~~~iP~Cp~Cgg~LRP~VVlFGE~lp~~~~~~a~~~~~~aDllLVvGTSl~V~pa~ 343 (396)
....+|+||.|||.|||+||||||++|++.++++.+++++||++|||||||.|+|++
T Consensus 141 -----------------------~~~~~p~C~~Cgg~lrP~vv~FgE~lp~~~~~~a~~~~~~adl~lviGTSl~V~P~~ 197 (246)
T 1yc5_A 141 -----------------------ESSDVPLCDDCNSLIRPNIVFFGENLPQDALREAIGLSSRASLMIVLGSSLVVYPAA 197 (246)
T ss_dssp -----------------------TTCSSCBCTTTCCBEEEEECCBTSBCCHHHHHHHHHHHHHCSEEEEESCCSCEETGG
T ss_pred -----------------------ccCCCCCCCCCCCccCcceEECCCCCCHHHHHHHHHHHhcCCEEEEECCCCcchhHH
Confidence 011479999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHCCCeEEEEcCCCCCCCCcccEEEeCcHHHHHHHHHHhCCCC
Q 016025 344 RLVRAAHEAGSTIAIVNVGETRADDLTTLKISARLGEILPRVLDVGSLS 392 (396)
Q Consensus 344 ~Lv~~a~~~g~~lIiIN~~~t~~d~~a~l~I~~~a~evL~~L~~~~~l~ 392 (396)
+|+..++++|+++|+||+++++.|..+++.|+++++++|++|++.|||+
T Consensus 198 ~l~~~a~~~g~~~i~IN~~~~~~d~~~~~~i~~~~~~~l~~l~~~lg~~ 246 (246)
T 1yc5_A 198 ELPLITVRSGGKLVIVNLGETPFDDIATLKYNMDVVEFARRVMEEGGIS 246 (246)
T ss_dssp GHHHHHHHHTCEEEEECSSCCTTGGGCSEEECSCHHHHHHHHHHHHTC-
T ss_pred HHHHHHHHcCCeEEEEeCCCCCCCcceeEEEeCCHHHHHHHHHHHcCCC
Confidence 9999998889999999999999999999999999999999999999985
|
| >1ma3_A SIR2-AF2, transcriptional regulatory protein, SIR2 family; enzyme-substrate complex, protein binding, transcription; HET: ALY MES; 2.00A {Archaeoglobus fulgidus} SCOP: c.31.1.5 PDB: 1s7g_A* 1yc2_A* | Back alignment and structure |
|---|
| >1m2k_A Silent information regulator 2; protein-ligand complex, gene regulation; HET: APR; 1.47A {Archaeoglobus fulgidus} SCOP: c.31.1.5 PDB: 1m2g_A* 1m2h_A* 1m2j_A* 1m2n_A* 1ici_A* | Back alignment and structure |
|---|
| >3riy_A NAD-dependent deacetylase sirtuin-5; desuccinylase, demalonylase, posttranslational modification, binding domain, rossmann fold domain; HET: SLL NAD; 1.55A {Homo sapiens} SCOP: c.31.1.5 PDB: 3rig_A* 4f4u_A* 4f56_A* 4hda_A* 2b4y_A* 2nyr_A* 4g1c_A* | Back alignment and structure |
|---|
| >3u31_A SIR2A, transcriptional regulatory protein SIR2 homologue; Zn-binding domain, rossmann fold domain; HET: MYK NAD; 2.20A {Plasmodium falciparum} PDB: 3u3d_A* 3jwp_A* | Back alignment and structure |
|---|
| >1s5p_A NAD-dependent deacetylase; protein deacetylase, SIR2 homologue, hydrolase; HET: ALY; 1.96A {Escherichia coli} SCOP: c.31.1.5 | Back alignment and structure |
|---|
| >1q1a_A HST2 protein; ternary complex, histone deacetylase, 2'-O-ADP ribose,, gene regulation; HET: ALY OAD; 1.50A {Saccharomyces cerevisiae} SCOP: c.31.1.5 PDB: 1szd_A* 1szc_A* 2od7_A* 2od9_A* 2qqf_A* 2qqg_A* 1q17_A* 2od2_A* | Back alignment and structure |
|---|
| >3k35_A NAD-dependent deacetylase sirtuin-6; rossmann fold, Zn-binding domain, structural genomics, struc genomics consortium, SGC, ADP-ribosylation; HET: APR; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
| >3glr_A NAD-dependent deacetylase sirtuin-3, mitochondria; NAD dependent deacetylase, sirtuin, substrate peptide comple hydrolase, metal-binding; HET: ALY; 1.80A {Homo sapiens} PDB: 3gls_A 3glt_A* 3glu_A 4hd8_A* 4fvt_A* | Back alignment and structure |
|---|
| >2hjh_A NAD-dependent histone deacetylase SIR2; protein, sirtuin, acetyl-ADP-ribose, nicotinamide, hydrolase; HET: XYQ; 1.85A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >3pki_A NAD-dependent deacetylase sirtuin-6; ADP ribose, structural genomics, structural genomics consortium, SGC, hydrolase; HET: AR6; 2.04A {Homo sapiens} PDB: 3pkj_A* | Back alignment and structure |
|---|
| >4iao_A NAD-dependent histone deacetylase SIR2; protein complex, deacetylase, nucleus, hydrolase-trans complex; HET: APR; 2.90A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >1j8f_A SIRT2, sirtuin 2, isoform 1, silencing INFO; gene regulation, transferase; 1.70A {Homo sapiens} SCOP: c.31.1.5 | Back alignment and structure |
|---|
| >1q14_A HST2 protein; histone deacetylase, hydrolase; 2.50A {Saccharomyces cerevisiae} SCOP: c.31.1.5 | Back alignment and structure |
|---|
| >3lq1_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- 1-carboxylate synthase; menaquinone biosynthesis, sephchc synthase, structural genomics; 2.60A {Listeria monocytogenes} | Back alignment and structure |
|---|
| >2iht_A Carboxyethylarginine synthase; thiamin diphosphate complex, transferase; HET: MSE TPP; 2.00A {Streptomyces clavuligerus} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1upb_A* 1upc_A* 1upa_A* 2ihu_A* 2ihv_A* | Back alignment and structure |
|---|
| >3hww_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- carboxylate synthase; menaquinone, THDP, Mg, vitamin K2, carboxylase, magnesium; HET: AKG; 1.95A {Escherichia coli k-12} PDB: 3flm_A* 3hwx_A* 2jlc_A* 2jla_A* | Back alignment and structure |
|---|
| >1ozh_A ALS, acetolactate synthase, catabolic; acetohydroxyacid synthase, thiamin diphosphate, lyase; HET: PGE HE3; 2.00A {Klebsiella pneumoniae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1ozg_A* 1ozf_A* | Back alignment and structure |
|---|
| >3eya_A Pyruvate dehydrogenase [cytochrome]; pyruvate oxidase, membrane-associated flavoprotein dehydrogenase, interactions with lipids cell membrane; HET: TDP FAD; 2.50A {Escherichia coli} PDB: 3ey9_A* | Back alignment and structure |
|---|
| >2x7j_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene -1-carboxylate synthase; transferase, metal-binding; HET: TPP; 2.35A {Bacillus subtilis} | Back alignment and structure |
|---|
| >1ybh_A Acetolactate synthase, chloroplast; acetohydroxyacid synthase, herbicide, sulfonylurea, thiamin diphosphate, FAD, inhibitor; HET: CIE NHE FAD P22; 2.50A {Arabidopsis thaliana} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1yhy_A* 1yhz_A* 1yi0_A* 1yi1_A* 1z8n_A* 3ea4_A* 3e9y_A* | Back alignment and structure |
|---|
| >4feg_A Pyruvate oxidase; carbanion, structure activity relationship, oxidation-reduct umpolung, thiamine diphosphate, reaction intermediate; HET: TDM FAD GOL; 1.09A {Lactobacillus plantarum} PDB: 4fee_A* 1y9d_A* 2ez9_A* 2ez4_A* 2ez8_A* 2ezt_A* 2ezu_A* 1pow_A* 1pox_A* | Back alignment and structure |
|---|
| >2c31_A Oxalyl-COA decarboxylase; oxalate, thiamin diphosphate, flavoprotein, lyase, thiamine pyrophosphate; HET: TZD ADP; 1.73A {Oxalobacter formigenes} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 2ji6_A* 2ji7_A* 2ji8_A* 2ji9_A* 2jib_A* | Back alignment and structure |
|---|
| >2pgn_A Cyclohexane-1,2-dione hydrolase (CDH); three alpha/beta domains; HET: P6G FAD TPP; 1.20A {Azoarcus SP} PDB: 2pgo_A* | Back alignment and structure |
|---|
| >2pan_A Glyoxylate carboligase; thiamin-diphosphate (THDP), thimain-dependent enzymes, FAD, lyase; HET: FAD TDP 1PE; 2.70A {Escherichia coli} | Back alignment and structure |
|---|
| >2q28_A Oxalyl-COA decarboxylase; lyase, oxalate degradation, thiami diphosphate, lyase; HET: TPP ADP MES; 1.74A {Escherichia coli} PDB: 2q27_A* 2q29_A* | Back alignment and structure |
|---|
| >1o97_D Electron transferring flavoprotein alpha-subunit; FAD binding; HET: AMP FAD; 1.6A {Methylophilus methylotrophus} SCOP: c.26.2.3 c.31.1.2 PDB: 1o95_D* 1o96_B* 1o94_D* 3clu_D* 3clt_D* 3clr_D* 3cls_D* | Back alignment and structure |
|---|
| >1v5e_A Pyruvate oxidase; oxidoreductase, flavoprotein; HET: FAD; 1.60A {Aerococcus viridans} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 2dji_A* 1v5f_A* 1v5g_A* | Back alignment and structure |
|---|
| >1t9b_A Acetolactate synthase, mitochondrial; acetohydroxyacid synthase, herbicide, sulfonylurea, thiamin diphosphate, FAD, inhibitor; HET: 1CS P25 FAD NSP P22 YF3; 2.20A {Saccharomyces cerevisiae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1n0h_A* 1t9a_A* 1t9c_A* 1t9d_A* 1jsc_A* | Back alignment and structure |
|---|
| >2lcq_A Putative toxin VAPC6; PIN domain, Zn ribbon domain, ribosome biogenesis, metal BIN protein; NMR {Pyrococcus horikoshii} | Back alignment and structure |
|---|
| >2uz1_A Benzaldehyde lyase; thiamine diphosphate, thiamine pyrophosphate, benzoin, flavoprotein; HET: TPP; 1.65A {Pseudomonas fluorescens} PDB: 2ag1_A* 2ag0_A* 2uz1_B* 3iae_A* 3iaf_A* 3d7k_A* | Back alignment and structure |
|---|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 396 | ||||
| d2b4ya1 | 267 | c.31.1.5 (A:36-302) NAD-dependent deacetylase sirt | 1e-65 | |
| d1ma3a_ | 252 | c.31.1.5 (A:) AF0112, Sir2 homolog (Sir2-AF2) {Arc | 3e-54 | |
| d1yc5a1 | 245 | c.31.1.5 (A:1-245) NAD-dependent deacetylase NpdA | 8e-54 | |
| d1m2ka_ | 249 | c.31.1.5 (A:) AF1676, Sir2 homolog (Sir2-AF1?) {Ar | 8e-52 | |
| d1s5pa_ | 235 | c.31.1.5 (A:) NAD-dependent deacetylase CobB {Esch | 1e-51 | |
| d1j8fa_ | 323 | c.31.1.5 (A:) Sirt2 histone deacetylase {Human (Ho | 7e-48 | |
| d1q1aa_ | 289 | c.31.1.5 (A:) Hst2 {Baker's yeast (Saccharomyces c | 2e-40 |
| >d2b4ya1 c.31.1.5 (A:36-302) NAD-dependent deacetylase sirtuin-5 {Human (Homo sapiens) [TaxId: 9606]} Length = 267 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: DHS-like NAD/FAD-binding domain superfamily: DHS-like NAD/FAD-binding domain family: Sir2 family of transcriptional regulators domain: NAD-dependent deacetylase sirtuin-5 species: Human (Homo sapiens) [TaxId: 9606]
Score = 208 bits (530), Expect = 1e-65
Identities = 72/292 (24%), Positives = 111/292 (38%), Gaps = 38/292 (13%)
Query: 107 PSIEDINQFAKLI-------VLTGAGISTECGIPDYRSPNGAYSSGFKPITHQQFVRSSR 159
PS + F K +++GAG+S E G+P +R G + ++ + +
Sbjct: 1 PS-SSMADFRKFFAKAKHIVIISGAGVSAESGVPTFRGAGGYWR-KWQAQDLATPLAFAH 58
Query: 160 ARRRYWARSYAGWRRFMAAQPNPAHFALASLEK----AGRIDCMITQNVDRLHHRAGS-N 214
R W + + +PN H A+A E GR +ITQN+D LH +AG+ N
Sbjct: 59 NPSRVWEFYHYRREVMGSKEPNAGHRAIAECETRLGKQGRRVVVITQNIDELHRKAGTKN 118
Query: 215 PLELHGTVYTVVCLDCGFSFCRDLFQDQVKALNPKWAEAIESLDYGSPGSDRSFGMKQRP 274
LE+HG+++ C CG AL+ K A P
Sbjct: 119 LLEIHGSLFKTRCTSCGVVAENY-KSPICPALSGKGA----------------------P 155
Query: 275 DGDIEIDEKFWEEDFHIPTCQKCNGVLKPDVVFFGDNVPKDRADKAMEAAKECDAFLVLG 334
+ + D E C G+L+P VV+FG+N+ ++ CD LV+G
Sbjct: 156 EPGTQ-DASIPVEKLPRCEEAGCGGLLRPHVVWFGENLDPAILEEVDRELAHCDLCLVVG 214
Query: 335 SSLMTMSAYRLVRAAHEAGSTIAIVNVGETRADDLTTLKISARLGEILPRVL 386
+S + A G +A N T A + G LP L
Sbjct: 215 TSSVVYPAAMFAPQVAARGVPVAEFNTETTPATNRFRFHFQGPCGTTLPEAL 266
|
| >d1ma3a_ c.31.1.5 (A:) AF0112, Sir2 homolog (Sir2-AF2) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 252 | Back information, alignment and structure |
|---|
| >d1yc5a1 c.31.1.5 (A:1-245) NAD-dependent deacetylase NpdA {Thermotoga maritima [TaxId: 2336]} Length = 245 | Back information, alignment and structure |
|---|
| >d1m2ka_ c.31.1.5 (A:) AF1676, Sir2 homolog (Sir2-AF1?) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 249 | Back information, alignment and structure |
|---|
| >d1s5pa_ c.31.1.5 (A:) NAD-dependent deacetylase CobB {Escherichia coli [TaxId: 562]} Length = 235 | Back information, alignment and structure |
|---|
| >d1j8fa_ c.31.1.5 (A:) Sirt2 histone deacetylase {Human (Homo sapiens) [TaxId: 9606]} Length = 323 | Back information, alignment and structure |
|---|
| >d1q1aa_ c.31.1.5 (A:) Hst2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 289 | Back information, alignment and structure |
|---|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 396 | |||
| d1yc5a1 | 245 | NAD-dependent deacetylase NpdA {Thermotoga maritim | 100.0 | |
| d1m2ka_ | 249 | AF1676, Sir2 homolog (Sir2-AF1?) {Archaeon Archaeo | 100.0 | |
| d2b4ya1 | 267 | NAD-dependent deacetylase sirtuin-5 {Human (Homo s | 100.0 | |
| d1s5pa_ | 235 | NAD-dependent deacetylase CobB {Escherichia coli [ | 100.0 | |
| d1ma3a_ | 252 | AF0112, Sir2 homolog (Sir2-AF2) {Archaeon Archaeog | 100.0 | |
| d1q1aa_ | 289 | Hst2 {Baker's yeast (Saccharomyces cerevisiae) [Ta | 100.0 | |
| d1j8fa_ | 323 | Sirt2 histone deacetylase {Human (Homo sapiens) [T | 100.0 | |
| d2ji7a1 | 175 | Oxalyl-CoA decarboxylase {Oxalobacter formigenes [ | 96.87 | |
| d2ihta1 | 177 | Carboxyethylarginine synthase {Streptomyces clavul | 96.63 | |
| d2ez9a1 | 183 | Pyruvate oxidase {Lactobacillus plantarum [TaxId: | 96.59 | |
| d1ybha1 | 179 | Acetohydroxyacid synthase catalytic subunit {Thale | 96.55 | |
| d2djia1 | 177 | Pyruvate oxidase {Aerococcus viridans [TaxId: 1377 | 96.52 | |
| d1ozha1 | 179 | Catabolic acetolactate synthase {Klebsiella pneumo | 96.41 | |
| d1t9ba1 | 171 | Acetohydroxyacid synthase catalytic subunit {Baker | 96.28 | |
| d1q6za1 | 160 | Benzoylformate decarboxylase {Pseudomonas putida [ | 93.86 | |
| d1pvda1 | 179 | Pyruvate decarboxylase {Baker's yeast (Saccharomyc | 93.0 | |
| d1zpda1 | 175 | Pyruvate decarboxylase {Zymomonas mobilis [TaxId: | 91.5 | |
| d3clsd2 | 123 | C-terminal domain of the electron transfer flavopr | 91.05 | |
| d1efva2 | 124 | C-terminal domain of the electron transfer flavopr | 90.91 | |
| d1ovma1 | 161 | Indole-3-pyruvate decarboxylase {Enterobacter cloa | 90.38 | |
| d2ak3a2 | 37 | Microbial and mitochondrial ADK, insert "zinc fing | 82.01 | |
| d1s24a_ | 56 | Two-iron rubredoxin {Pseudomonas oleovorans [TaxId | 81.36 | |
| d2iv2x2 | 564 | Formate dehydrogenase H {Escherichia coli [TaxId: | 80.77 | |
| d1ytla1 | 158 | Acetyl-CoA decarbonylase/synthase complex epsilon | 80.47 |
| >d1yc5a1 c.31.1.5 (A:1-245) NAD-dependent deacetylase NpdA {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: DHS-like NAD/FAD-binding domain superfamily: DHS-like NAD/FAD-binding domain family: Sir2 family of transcriptional regulators domain: NAD-dependent deacetylase NpdA species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=2.3e-64 Score=478.88 Aligned_cols=238 Identities=37% Similarity=0.646 Sum_probs=203.9
Q ss_pred chHHHHhcCCcEEEEECCcccccCCCCCcCCCCcCccCCCCC--CChHHHhhchhhHHHHHHHHHhhhhhcccCCCCHHH
Q 016025 107 PSIEDINQFAKLIVLTGAGISTECGIPDYRSPNGAYSSGFKP--ITHQQFVRSSRARRRYWARSYAGWRRFMAAQPNPAH 184 (396)
Q Consensus 107 ~~~~~i~~ak~IVvlTGAGISaaSGIPdFRs~~Gl~~~~~~p--~~~~~f~~~~~~~~~~w~~~~~~~~~~~~a~Pn~~H 184 (396)
.+.++|++|++|||+|||||||+||||||||++|+|+. +.+ ++...|.++|+.+|.||.+. +..+.+++||.+|
T Consensus 5 ~l~~~l~~~~~ivvltGAGiS~~SGIPdfR~~~G~w~~-~~~~~~~~~~f~~~p~~~~~~~~~~---~~~~~~~~P~~~H 80 (245)
T d1yc5a1 5 EFLDLLNESRLTVTLTGAGISTPSGIPDFRGPNGIYKK-YSQNVFDIDFFYSHPEEFYRFAKEG---IFPMLQAKPNLAH 80 (245)
T ss_dssp HHHHHHHHCSSEEEEECGGGTGGGTCCCC------------CCTTBHHHHHHCHHHHHHHHHHH---TGGGGGCCCCHHH
T ss_pred HHHHHHHhCCCEEEEECchhccccCCCCccCcCCCccC-CCcccccHHHHHhhhHHHHHHHHhh---hhhhhhhhhhhhh
Confidence 35789999999999999999999999999999999974 432 57788888887666665432 2345689999999
Q ss_pred HHHHHHHHhCCCceeeecCccchHhhhCCCc-eeeccccceeeeCCCCcccchhhHHHHHHhhChhHHHHHhhhcCCCCC
Q 016025 185 FALASLEKAGRIDCMITQNVDRLHHRAGSNP-LELHGTVYTVVCLDCGFSFCRDLFQDQVKALNPKWAEAIESLDYGSPG 263 (396)
Q Consensus 185 ~aLa~Le~~g~l~~VITQNIDgLh~kAG~~~-iElHGsl~~~~C~~C~~~~~~~~~~~~l~~~np~~~~~~~~l~~g~p~ 263 (396)
++|++|+++|++.+||||||||||++||+++ +|+||++++.+|..|++.|+.+.+....
T Consensus 81 ~~L~~l~~~~~~~~viTQNiDgLh~~AG~~~v~elHG~l~~~~C~~c~~~~~~~~~~~~~-------------------- 140 (245)
T d1yc5a1 81 VLLAKLEEKGLIEAVITQNIDRLHQRAGSKKVIELHGNVEEYYCVRCEKKYTVEDVIKKL-------------------- 140 (245)
T ss_dssp HHHHHHHHTTSCSEEEECCCSCHHHHTTCSCEEETTEEEEEEEETTTCCEEEHHHHHHHT--------------------
T ss_pred HHHHHHHhcCCCceEeecccchHHHHcCCccccccccccceeeecccCCCccHHHHhhhh--------------------
Confidence 9999999999999999999999999999999 9999999999999999999876442211
Q ss_pred CCCCcCcccCCCCCcccccccccccCCCCcCCCCCCcccCcEEEcCCCCCHHHHHHHHHHHhhCCeEEEEccCcchhhHH
Q 016025 264 SDRSFGMKQRPDGDIEIDEKFWEEDFHIPTCQKCNGVLKPDVVFFGDNVPKDRADKAMEAAKECDAFLVLGSSLMTMSAY 343 (396)
Q Consensus 264 ~~~s~~~~~~pd~d~~i~~~~~~~~~~iP~Cp~Cgg~LRP~VVlFGE~lp~~~~~~a~~~~~~aDllLVvGTSl~V~pa~ 343 (396)
.....|.|+.|||.+||+||||||.+|++.++++.++++++|++|||||||.|+|++
T Consensus 141 -----------------------~~~~~p~c~~Cgg~lrP~Vv~FgE~lp~~~~~~a~~~~~~~DlllviGTSl~V~p~~ 197 (245)
T d1yc5a1 141 -----------------------ESSDVPLCDDCNSLIRPNIVFFGENLPQDALREAIGLSSRASLMIVLGSSLVVYPAA 197 (245)
T ss_dssp -----------------------TTCSSCBCTTTCCBEEEEECCBTSBCCHHHHHHHHHHHHHCSEEEEESCCSCEETGG
T ss_pred -----------------------hcccCCCccccCCcccCcEEEccccCCHHHHHHHHHHhhcCCEEEEECCCeEEechh
Confidence 012478999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHCCCeEEEEcCCCCCCCCcccEEEeCcHHHHHHHHHHhCCC
Q 016025 344 RLVRAAHEAGSTIAIVNVGETRADDLTTLKISARLGEILPRVLDVGSL 391 (396)
Q Consensus 344 ~Lv~~a~~~g~~lIiIN~~~t~~d~~a~l~I~~~a~evL~~L~~~~~l 391 (396)
+++..++++|+++|+||+++|+.|..++++|+++++|+|++|++.||+
T Consensus 198 ~l~~~a~~~g~~~i~IN~~~t~~d~~~d~~i~g~~~e~l~~l~~~lgi 245 (245)
T d1yc5a1 198 ELPLITVRSGGKLVIVNLGETPFDDIATLKYNMDVVEFARRVMEEGGI 245 (245)
T ss_dssp GHHHHHHHHTCEEEEECSSCCTTGGGCSEEECSCHHHHHHHHHHHHTC
T ss_pred hhhHHHHHcCCeEEEECCCCCCCCcceeEEEeCCHHHHHHHHHHHcCC
Confidence 999999999999999999999999999999999999999999999885
|
| >d1m2ka_ c.31.1.5 (A:) AF1676, Sir2 homolog (Sir2-AF1?) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
| >d2b4ya1 c.31.1.5 (A:36-302) NAD-dependent deacetylase sirtuin-5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1s5pa_ c.31.1.5 (A:) NAD-dependent deacetylase CobB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d1ma3a_ c.31.1.5 (A:) AF0112, Sir2 homolog (Sir2-AF2) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
| >d1q1aa_ c.31.1.5 (A:) Hst2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d1j8fa_ c.31.1.5 (A:) Sirt2 histone deacetylase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d2ji7a1 c.31.1.3 (A:195-369) Oxalyl-CoA decarboxylase {Oxalobacter formigenes [TaxId: 847]} | Back information, alignment and structure |
|---|
| >d2ihta1 c.31.1.3 (A:198-374) Carboxyethylarginine synthase {Streptomyces clavuligerus [TaxId: 1901]} | Back information, alignment and structure |
|---|
| >d2ez9a1 c.31.1.3 (A:183-365) Pyruvate oxidase {Lactobacillus plantarum [TaxId: 1590]} | Back information, alignment and structure |
|---|
| >d1ybha1 c.31.1.3 (A:281-459) Acetohydroxyacid synthase catalytic subunit {Thale cress (Arabidopsis thaliana), chloroplast [TaxId: 3702]} | Back information, alignment and structure |
|---|
| >d2djia1 c.31.1.3 (A:187-363) Pyruvate oxidase {Aerococcus viridans [TaxId: 1377]} | Back information, alignment and structure |
|---|
| >d1ozha1 c.31.1.3 (A:188-366) Catabolic acetolactate synthase {Klebsiella pneumoniae [TaxId: 573]} | Back information, alignment and structure |
|---|
| >d1t9ba1 c.31.1.3 (A:290-460) Acetohydroxyacid synthase catalytic subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d1q6za1 c.31.1.3 (A:182-341) Benzoylformate decarboxylase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
| >d1pvda1 c.31.1.3 (A:182-360) Pyruvate decarboxylase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d1zpda1 c.31.1.3 (A:188-362) Pyruvate decarboxylase {Zymomonas mobilis [TaxId: 542]} | Back information, alignment and structure |
|---|
| >d3clsd2 c.31.1.2 (D:196-318) C-terminal domain of the electron transfer flavoprotein alpha subunit {Methylophilus methylotrophus [TaxId: 17]} | Back information, alignment and structure |
|---|
| >d1efva2 c.31.1.2 (A:208-331) C-terminal domain of the electron transfer flavoprotein alpha subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1ovma1 c.31.1.3 (A:181-341) Indole-3-pyruvate decarboxylase {Enterobacter cloacae [TaxId: 550]} | Back information, alignment and structure |
|---|
| >d2ak3a2 g.41.2.1 (A:125-161) Microbial and mitochondrial ADK, insert "zinc finger" domain {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]} | Back information, alignment and structure |
|---|
| >d1s24a_ g.41.5.1 (A:) Two-iron rubredoxin {Pseudomonas oleovorans [TaxId: 301]} | Back information, alignment and structure |
|---|
| >d2iv2x2 c.81.1.1 (X:1-564) Formate dehydrogenase H {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d1ytla1 c.31.1.6 (A:17-174) Acetyl-CoA decarbonylase/synthase complex epsilon subunit 2, ACDE2 {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|