Citrus Sinensis ID: 016026

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390------
MSFRSIVRDVRDGFGSLSRRSFEVRLPGHHGRGKSHGSVHELHDQPVVIQNSRWAGLPPELLRDVIKRLEASESTWPARKHVVACAAVCRSWREMCKEIVRNPEFSGKITFPVSLKQPGPRDGTIQCFIKRDKSNLTYHLFLCLSPDNISRSSSTYIGKLRSNFLGTKFIIYDTQPPYNSAQLSPPGRSRRFYSKKVSPKVPTGSYNIAQVSYELNVLGTRGPRRMHCTMHSIPASALEPGGSVPGQAELNPRSLEDSFRNFSKSIDVSTEFSSSRFSDIVGPRDEEDEGKDRPLILRNKAPRWHEQLQCWCLNFRGRVTVASVKNFQLIAATQPAAGAPTPSQPPPPPPSDHDKIILQFGKVGKDMFTMDYRYPLSAFQAFAICLSSFDTKLACE
cccHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHcccccccccccccEEEEcccccccEEEEEEccccccccccccccccccccccccEEEEEEEEccccccEEEEEEccccccccccccEEEEEcccccccEEEEEcccccccccccccccccccccccccccccccccccEEEEEEEEccccccccccEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEcccccccccccccEEEEccccEEccccccEEEEEccccccccccccccccccccccccEEEEEEcccccEEEEEEcccccHHHHHHHHHHHcccccccc
ccHHHHHHHHHccccccccccEEEEEccccccccccccccccccccHHHHccccccccHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHcccccccccEEEEEEEcccccccccEEEEEEEcccccEEEEEEEEcccccccccccEEEEEcccccccEEEEEccccccccccccccccccEEcccccccccccccEEEEEEEEccccccccccccEEEEEcccccHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEcccEEEccccEEEEEEccEEEEcEccEEEEEcccccccccccccccccccccccccccEEEEEEEccEEEEEEcccccHHHHHHHHHHHHHcccccc
MSFRSIVRDVRDgfgslsrrsfevrlpghhgrgkshgsvhelhdqpvviqnsrwaglppELLRDVIKRLEasestwpaRKHVVACAAVCRSWREMCKEIVrnpefsgkitfpvslkqpgprdgtiqCFIKRDKSNLTYHLFLClspdnisrssstYIGKLrsnflgtkfiiydtqppynsaqlsppgrsrrfyskkvspkvptgsynIAQVSYELNvlgtrgprrmhctmhsipasalepggsvpgqaelnprsleDSFRNFsksidvstefsssrfsdivgprdeedegkdrplilrnkaprWHEQLQCWCLNFRGRVTVASVKNFQLIaatqpaagaptpsqppppppsdhdkiILQFGkvgkdmftmdyryplSAFQAFAICLSSfdtklace
msfrsivrdvrdgfgslsrrsfevrlpghhgrgkshgsvhELHDQPVVIQNSRWAGLPPELLRDVIKRLEasestwparkhVVACAAVCRSWREMCKEIVrnpefsgkitfpvslkqpgprdGTIQCFIKRDKSNLTYHLFLCLSPDNISRSSSTYIGKLRSNFLGTKFIIYDTqppynsaqlsppgrsrrfyskkvspkvptgsyniaQVSYELNVLGTRGPRRMHCTMHSIPASALEPGGSVPGQAELNPRSLEDSFRNFSKsidvstefsssrfsdivgprdeedegkdrpLILRNKAPRWHEQLQCWCLNFRGRVTVASVKNFQLIAATQPAAGAPTPSQPPPPPPSDHDKIILQFGKVGKDMFTMDYRYPLSAFQAFAICLSSFDTKLACE
MSFRSIVRDVRDGFGSLSRRSFEVRLPGHHGRGKSHGSVHELHDQPVVIQNSRWAGLPPELLRDVIKRLEASESTWPARKHVVACAAVCRSWREMCKEIVRNPEFSGKITFPVSLKQPGPRDGTIQCFIKRDKSNLTYHLFLCLSPDNISRSSSTYIGKLRSNFLGTKFIIYDTQPPYNSAQLSPPGRSRRFYSKKVSPKVPTGSYNIAQVSYELNVLGTRGPRRMHCTMHSIPASALEPGGSVPGQAELNPRSLEDSFRNFSKSIDVSTEFSSSRFSDIVGPRDEEDEGKDRPLILRNKAPRWHEQLQCWCLNFRGRVTVASVKNFQLIaatqpaagaptpsqppppppsDHDKIILQFGKVGKDMFTMDYRYPLSAFQAFAICLSSFDTKLACE
********************************************QPVVIQNSRWAGLPPELLRDVIKRLEASESTWPARKHVVACAAVCRSWREMCKEIVRNPEFSGKITFPVSLKQPGPRDGTIQCFIKRDKSNLTYHLFLCLSPDNISRSSSTYIGKLRSNFLGTKFIIYDT*****************************GSYNIAQVSYELNVLGTRG*************************************************************************ILRNKAPRWHEQLQCWCLNFRGRVTVASVKNFQLIAA***********************IILQFGKVGKDMFTMDYRYPLSAFQAFAICLSSFDTK****
*SFRSIVRDVRDGF*********************************************ELLRDVIKRL***********HVVACAAVCRSWREMCKEIVRN*EFSGKITFPVSLKQPGPRDGTIQCFIKRDKSNLTYHLFLCLSPDNISRSSSTYIGKLRSNFLGTKFIIYDTQPPY******************VS****TGSYNIAQVSYELNVLGTRGPRRMHCTMHSIPA*********************************************************RPLILRNKAPRWHEQLQCWCLNFRGRVTVASVKNFQLIAATQP***************SDHDKIILQFGKVGKDMFTMDYRYPLSAFQAFAICLSSFDTKLACE
MSFRSIVRDVRDGFGSLSRRSFEVRLPG***********HELHDQPVVIQNSRWAGLPPELLRDVIKRLEASESTWPARKHVVACAAVCRSWREMCKEIVRNPEFSGKITFPVSLKQPGPRDGTIQCFIKRDKSNLTYHLFLCLSPDNISRSSSTYIGKLRSNFLGTKFIIYDTQPPYNSAQLSPPGRSRRFYSKKVSPKVPTGSYNIAQVSYELNVLGTRGPRRMHCTMHSIPASALEPGGSVPGQAELNPRSLEDSFRNFSKSIDV**********************KDRPLILRNKAPRWHEQLQCWCLNFRGRVTVASVKNFQLIAATQ****************SDHDKIILQFGKVGKDMFTMDYRYPLSAFQAFAICLSSFDTKLACE
***************SLSRRSFEVR*P******************P*VIQNSRWAGLPPELLRDVIKRLEASESTWPARKHVVACAAVCRSWREMCKEIVRNPEFSGKITFPVSLKQPGPRDGTIQCFIKRDKSNLTYHLFLCLSPDNISRSSSTYIGKLRSNFLGTKFIIYDTQP*****************SKKVSPKVPTGSYNIAQVSYELNVLGTRGPRRMHCTMHSIPASALEPG**************************************************DRPLILRNKAPRWHEQLQCWCLNFRGRVTVASVKNFQLIAAT*******************HDKIILQFGKVGKDMFTMDYRYPLSAFQAFAICLSSFDTKLAC*
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MSFRSIVRDVRDGFGSLSRRSFEVRLPGHHGRGKSHGSVHELHDQPVVIQNSRWAGLPPELLRDVIKRLEASESTWPARKHVVACAAVCRSWREMCKEIVRNPEFSGKITFPVSLKQPGPRDGTIQCFIKRDKSNLTYHLFLCLSPDNISRSSSTYIGKLRSNFLGTKFIIYDTQPPYNSAQLSPPGRSRRFYSKKVSPKVPTGSYNIAQVSYELNVLGTRGPRRMHCTMHSIPASALEPGGSVPGQAELNPRSLEDSFRNFSKSIDVSTEFSSSRFSDIVGPRDEEDEGKDRPLILRNKAPRWHEQLQCWCLNFRGRVTVASVKNFQLIAATQPAAGAPTPSQPPPPPPSDHDKIILQFGKVGKDMFTMDYRYPLSAFQAFAICLSSFDTKLACE
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query396 2.2.26 [Sep-21-2011]
Q2QXB2445 Tubby-like F-box protein yes no 0.997 0.887 0.701 1e-166
Q75HX5445 Tubby-like F-box protein no no 0.994 0.885 0.695 1e-165
Q7XSV4462 Tubby-like F-box protein no no 1.0 0.857 0.649 1e-160
Q9ZP59455 Tubby-like F-box protein yes no 1.0 0.870 0.654 1e-157
Q53PP5440 Tubby-like F-box protein no no 0.997 0.897 0.671 1e-157
Q8LJA9448 Tubby-like F-box protein no no 0.992 0.877 0.654 1e-156
Q9FRH7445 Tubby-like F-box protein no no 0.997 0.887 0.645 1e-154
Q944S3429 Tubby-like F-box protein no no 0.972 0.897 0.640 1e-153
Q69U54451 Tubby-like F-box protein no no 0.997 0.875 0.648 1e-152
Q8VY21406 Tubby-like F-box protein no no 0.946 0.923 0.515 1e-118
>sp|Q2QXB2|TLP14_ORYSJ Tubby-like F-box protein 14 OS=Oryza sativa subsp. japonica GN=TULP14 PE=2 SV=1 Back     alignment and function desciption
 Score =  584 bits (1506), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 313/446 (70%), Positives = 353/446 (79%), Gaps = 51/446 (11%)

Query: 1   MSFRSIVRDVRDGFGSLSRRSFEVRLPGHHGRGKSHGSVHELHDQPV------VIQNSRW 54
           MSFRSIVRDVRDGFGSLSRR FEVRL GH  RG+SH +VHEL D         V+Q+S W
Sbjct: 1   MSFRSIVRDVRDGFGSLSRRGFEVRLVGHR-RGRSHSAVHELRDGHAAAAAADVVQSSCW 59

Query: 55  AGLPPELLRDVIKRLEASESTWPARKHVVACAAVCRSWREMCKEIVRNPEFSGKITFPVS 114
           A LPPELLRDVI+RLEASE+ WP+RK+VVACAAVCR+WR+MC+EIV+NPEF GKITFPVS
Sbjct: 60  ANLPPELLRDVIERLEASEAAWPSRKNVVACAAVCRTWRDMCREIVKNPEFCGKITFPVS 119

Query: 115 LKQPGPRDGTIQCFIKRDKSNLTYHLFLCLS----------------------------- 145
           LKQPGPR+G IQCFIKRDKS  TY+L+LCLS                             
Sbjct: 120 LKQPGPRNGAIQCFIKRDKSTQTYNLYLCLSSAVLVESGKFLLSAKRYSRATCTEYTIFM 179

Query: 146 -PDNISRSSSTYIGKLRSNFLGTKFIIYDTQPPYNSAQLSPPGR-SRRFYSKKVSPKVPT 203
             DN SRSS+ YIGKLRSN LGTKF+IYDTQPP N+A +S  G+ SRRFYS+KVSPK P+
Sbjct: 180 SADNTSRSSNMYIGKLRSNLLGTKFVIYDTQPPCNTANVSQSGKTSRRFYSRKVSPKNPS 239

Query: 204 GSYNIAQVSYELNVLGTRGPRRMHCTMHSIPASALEPGGSVPGQAE-LNPRSLEDSFRN- 261
            +Y+IAQVSYELNVLGTRGPRRM+C MHSIPAS+LE GG+VP Q + +  RSL++SF + 
Sbjct: 240 STYSIAQVSYELNVLGTRGPRRMNCVMHSIPASSLEAGGTVPCQPDSVLARSLDESFGSI 299

Query: 262 -FSKS--IDVSTEFSSSRFSDI------VGPR--DEEDEGKDRPLILRNKAPRWHEQLQC 310
            FSKS  +D S  FSSSR+SDI      VG +   + DE K+RPLILRNKAPRWHEQLQC
Sbjct: 300 SFSKSSIMDRSIRFSSSRYSDISVGGPMVGGQALGDSDESKERPLILRNKAPRWHEQLQC 359

Query: 311 WCLNFRGRVTVASVKNFQLIAATQPAAGAPTPSQPPPPPPSDHDKIILQFGKVGKDMFTM 370
           WCLNF+GRVTVASVKNFQL+AATQPAAGAPTPSQP PPPP DHDK+ILQFGKV KDMFTM
Sbjct: 360 WCLNFKGRVTVASVKNFQLVAATQPAAGAPTPSQPAPPPPPDHDKVILQFGKVAKDMFTM 419

Query: 371 DYRYPLSAFQAFAICLSSFDTKLACE 396
           DYRYPLSAFQAFAICLSSFDTKLACE
Sbjct: 420 DYRYPLSAFQAFAICLSSFDTKLACE 445

Oryza sativa subsp. japonica (taxid: 39947)
>sp|Q75HX5|TLP8_ORYSJ Tubby-like F-box protein 8 OS=Oryza sativa subsp. japonica GN=TULP8 PE=2 SV=1 Back     alignment and function description
>sp|Q7XSV4|TLP7_ORYSJ Tubby-like F-box protein 7 OS=Oryza sativa subsp. japonica GN=TULP7 PE=2 SV=1 Back     alignment and function description
>sp|Q9ZP59|TLP1_ARATH Tubby-like F-box protein 1 OS=Arabidopsis thaliana GN=TULP1 PE=2 SV=1 Back     alignment and function description
>sp|Q53PP5|TLP13_ORYSJ Tubby-like F-box protein 13 OS=Oryza sativa subsp. japonica GN=TULP13 PE=2 SV=1 Back     alignment and function description
>sp|Q8LJA9|TLP3_ORYSJ Tubby-like F-box protein 3 OS=Oryza sativa subsp. japonica GN=TULP3 PE=2 SV=1 Back     alignment and function description
>sp|Q9FRH7|TLP10_ARATH Tubby-like F-box protein 10 OS=Arabidopsis thaliana GN=TULP10 PE=1 SV=1 Back     alignment and function description
>sp|Q944S3|TLP5_ARATH Tubby-like F-box protein 5 OS=Arabidopsis thaliana GN=TULP5 PE=2 SV=1 Back     alignment and function description
>sp|Q69U54|TLP12_ORYSJ Tubby-like F-box protein 12 OS=Oryza sativa subsp. japonica GN=TULP12 PE=2 SV=1 Back     alignment and function description
>sp|Q8VY21|TLP3_ARATH Tubby-like F-box protein 3 OS=Arabidopsis thaliana GN=TULP3 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query396
225460668425 PREDICTED: tubby-like F-box protein 8-li 0.989 0.922 0.862 0.0
224082450423 f-box family protein [Populus trichocarp 0.987 0.924 0.869 0.0
255566602424 phosphoric diester hydrolase, putative [ 0.989 0.924 0.862 0.0
118484667423 unknown [Populus trichocarpa] 0.987 0.924 0.866 0.0
224066676424 f-box family protein [Populus trichocarp 0.989 0.924 0.848 0.0
224082454424 predicted protein [Populus trichocarpa] 0.989 0.924 0.834 0.0
331687440424 F-box protein [Gossypium hirsutum] 0.989 0.924 0.843 0.0
449446265430 PREDICTED: tubby-like F-box protein 14-l 0.997 0.918 0.793 0.0
302399095426 TLP domain class transcription factor [M 0.994 0.924 0.838 0.0
225447793424 PREDICTED: tubby-like F-box protein 8-li 0.987 0.922 0.797 0.0
>gi|225460668|ref|XP_002267914.1| PREDICTED: tubby-like F-box protein 8-like [Vitis vinifera] Back     alignment and taxonomy information
 Score =  744 bits (1922), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 370/429 (86%), Positives = 386/429 (89%), Gaps = 37/429 (8%)

Query: 1   MSFRSIVRDVRDGFGSLSRRSFEVRLPGHHGRGKSHGSVHELHDQPVVIQNSRWAGLPPE 60
           MSFRSIVRDVRDGFGSLSRRSF+VRLPGHH RGKSHGSVHEL DQP+V+QNSRWAGLPPE
Sbjct: 1   MSFRSIVRDVRDGFGSLSRRSFDVRLPGHH-RGKSHGSVHELQDQPLVVQNSRWAGLPPE 59

Query: 61  LLRDVIKRLEASESTWPARKHVVACAAVCRSWREMCKEIVRNPEFSGKITFPVSLKQPGP 120
           LLRDVIKRLEASESTWP+RKHVVACAAVCRSWREMCKEIV++PEFSGK+TFP+SLKQPGP
Sbjct: 60  LLRDVIKRLEASESTWPSRKHVVACAAVCRSWREMCKEIVKSPEFSGKLTFPISLKQPGP 119

Query: 121 RDGTIQCFIKRDKSNLTYHLFLCLSP------------------------------DNIS 150
           RDGTIQCFIKRDKSNLTYHLFLCLSP                              DNIS
Sbjct: 120 RDGTIQCFIKRDKSNLTYHLFLCLSPALLVENGKFLLSAKRNRRTTCTEYVISMDADNIS 179

Query: 151 RSSSTYIGKLRSNFLGTKFIIYDTQPPYNSAQLSPPGR-SRRFYSKKVSPKVPTGSYNIA 209
           RSSSTYIGKLRSNFLGTKFIIYDTQPPYN +QLSPPGR SRRFYSKKVSPKVPTGSYNIA
Sbjct: 180 RSSSTYIGKLRSNFLGTKFIIYDTQPPYNGSQLSPPGRTSRRFYSKKVSPKVPTGSYNIA 239

Query: 210 QVSYELNVLGTRGPRRMHCTMHSIPASALEPGGSVPGQAELNPRSLEDSFR--NFSKSID 267
           QV+YELNVLGTRGPRRMHCTMHSIPAS+LEPGG+VPGQAEL PR+LEDSFR  +FSKSID
Sbjct: 240 QVTYELNVLGTRGPRRMHCTMHSIPASSLEPGGTVPGQAELLPRNLEDSFRSISFSKSID 299

Query: 268 VSTEFSSSRFSDIVGPRDEEDEGKDRPLILRNKAPRWHEQLQCWCLNFRGRVTVASVKNF 327
            STEFSSSRFSDI+GPRDEEDEGKDRPL+LRNK PRWHEQLQCWCLNFRGRVTVASVKNF
Sbjct: 300 NSTEFSSSRFSDIIGPRDEEDEGKDRPLVLRNKPPRWHEQLQCWCLNFRGRVTVASVKNF 359

Query: 328 QLIAATQPAAGAPTPSQPPPPPPSDHDKIILQFGKVGKDMFTMDYRYPLSAFQAFAICLS 387
           QLIAATQPAAGAPTPSQ   PP SDHDKIILQFGKVGKDMFTMDYRYPLSAFQAFAICLS
Sbjct: 360 QLIAATQPAAGAPTPSQ---PPASDHDKIILQFGKVGKDMFTMDYRYPLSAFQAFAICLS 416

Query: 388 SFDTKLACE 396
           SFDTKLACE
Sbjct: 417 SFDTKLACE 425

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224082450|ref|XP_002306697.1| f-box family protein [Populus trichocarpa] gi|222856146|gb|EEE93693.1| f-box family protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|255566602|ref|XP_002524285.1| phosphoric diester hydrolase, putative [Ricinus communis] gi|223536376|gb|EEF38025.1| phosphoric diester hydrolase, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|118484667|gb|ABK94204.1| unknown [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224066676|ref|XP_002302178.1| f-box family protein [Populus trichocarpa] gi|222843904|gb|EEE81451.1| f-box family protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224082454|ref|XP_002306698.1| predicted protein [Populus trichocarpa] gi|222856147|gb|EEE93694.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|331687440|gb|AED87506.1| F-box protein [Gossypium hirsutum] Back     alignment and taxonomy information
>gi|449446265|ref|XP_004140892.1| PREDICTED: tubby-like F-box protein 14-like [Cucumis sativus] gi|449494177|ref|XP_004159470.1| PREDICTED: tubby-like F-box protein 14-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|302399095|gb|ADL36842.1| TLP domain class transcription factor [Malus x domestica] Back     alignment and taxonomy information
>gi|225447793|ref|XP_002266692.1| PREDICTED: tubby-like F-box protein 8-like [Vitis vinifera] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query396
TAIR|locus:2194686429 TLP5 "AT1G43640" [Arabidopsis 0.651 0.601 0.622 8.2e-138
TAIR|locus:2025327455 TLP1 "AT1G76900" [Arabidopsis 0.489 0.426 0.677 5.6e-68
TAIR|locus:2032950445 TLP10 "AT1G25280" [Arabidopsis 0.729 0.649 0.607 7.7e-87
TAIR|locus:2036730413 TLP6 "AT1G47270" [Arabidopsis 0.411 0.394 0.529 9.6e-76
TAIR|locus:2062121394 TLP2 "AT2G18280" [Arabidopsis 0.954 0.959 0.411 2.1e-68
TAIR|locus:2081101380 TLP9 "AT3G06380" [Arabidopsis 0.881 0.918 0.414 5.5e-61
TAIR|locus:2180034389 TLP11 "AT5G18680" [Arabidopsis 0.878 0.894 0.416 1.2e-60
TAIR|locus:2009610379 TLP7 "AT1G53320" [Arabidopsis 0.914 0.955 0.384 2.1e-54
UNIPROTKB|E1B8A6508 TUB "Uncharacterized protein" 0.113 0.088 0.711 6.4e-30
MGI|MGI:2651573505 Tub "tubby candidate gene" [Mu 0.113 0.089 0.711 9.8e-30
TAIR|locus:2194686 TLP5 "AT1G43640" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 826 (295.8 bits), Expect = 8.2e-138, Sum P(2) = 8.2e-138
 Identities = 173/278 (62%), Positives = 201/278 (72%)

Query:   130 KRDKSNLTYHLF-LCLSPDNISRSSSTYIGKLRSNFLGTKFIIYDTQPPYNSAQ-LSPPG 187
             KR +   TY  + + +  DNISRSSSTYIGKL+SNFLGTKFI+YDT P YNS+Q LSPP 
Sbjct:   161 KRSR-RATYTEYVISMDADNISRSSSTYIGKLKSNFLGTKFIVYDTAPAYNSSQILSPPN 219

Query:   188 RSRRFYSKKVSPKVPTGSYNIAQVSYELNVLGTRGPRRMHCTMHSIPASALEPGGSVPGQ 247
             RSR F SKKVSPKVP+GSYNIAQV+YELN+LGTRGPRRM+C MHSIP+ ALEPGG+VP Q
Sbjct:   220 RSRSFNSKKVSPKVPSGSYNIAQVTYELNLLGTRGPRRMNCIMHSIPSLALEPGGTVPSQ 279

Query:   248 AELNPRSLEDSFRNFSKSIDVSTEFSSSRFSDIVGPRDEEDEGKDRPLILRNKAPRWHEQ 307
              E   RSL++SFR+   S  V+    S  F+     R +E+EGK RPL+L+ K PRW + 
Sbjct:   280 PEFLQRSLDESFRSIGSSKIVN---HSGDFT-----RPKEEEGKVRPLVLKTKPPRWLQP 331

Query:   308 LQCWCLNFRGRVTVASVKNFQLIXXXXXXXXXXXXXXXXXXX---------XXDHDKIIL 358
             L+CWCLNF+GRVTVASVKNFQL+                              +HDKIIL
Sbjct:   332 LRCWCLNFKGRVTVASVKNFQLMSAATVQPGSGSDGGALATRPSLSPQQPEQSNHDKIIL 391

Query:   359 QFGKVGKDMFTMDYRYPLSAFQAFAICLSSFDTKLACE 396
              FGKVGKDMFTMDYRYPLSAFQAFAI LS+FDTKLACE
Sbjct:   392 HFGKVGKDMFTMDYRYPLSAFQAFAISLSTFDTKLACE 429
GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS
GO:0005634 "nucleus" evidence=ISM
GO:0008081 "phosphoric diester hydrolase activity" evidence=ISS
GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS
GO:0009620 "response to fungus" evidence=IMP
TAIR|locus:2025327 TLP1 "AT1G76900" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2032950 TLP10 "AT1G25280" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2036730 TLP6 "AT1G47270" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2062121 TLP2 "AT2G18280" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2081101 TLP9 "AT3G06380" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2180034 TLP11 "AT5G18680" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2009610 TLP7 "AT1G53320" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|E1B8A6 TUB "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
MGI|MGI:2651573 Tub "tubby candidate gene" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q2QXB2TLP14_ORYSJNo assigned EC number0.70170.99740.8876yesno
Q9ZP59TLP1_ARATHNo assigned EC number0.65491.00.8703yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query396
pfam01167243 pfam01167, Tub, Tub family 1e-115
pfam1293747 pfam12937, F-box-like, F-box-like 9e-05
pfam0064648 pfam00646, F-box, F-box domain 0.001
>gnl|CDD|216339 pfam01167, Tub, Tub family Back     alignment and domain information 
 Score =  334 bits (859), Expect = e-115
 Identities = 124/305 (40%), Positives = 149/305 (48%), Gaps = 94/305 (30%)

Query: 118 PGPRDGTIQCFIKRDKSNLTYHLFLCLS-------------------------------- 145
           P PR GT+QC I RDKS + Y LF                                    
Sbjct: 1   PAPRGGTVQCRITRDKSGMDYGLFPTYYLHLERENGKKKFLLAARKRKRSKTSNYLISLD 60

Query: 146 PDNISRSSSTYIGKLRSNFLGTKFIIYDTQPPYNSAQLSPPGRSRRFYSKKVSPKVPTGS 205
           P ++SRS   YIGKLRSNFLGTKF ++D       A+L             V+PKV +G 
Sbjct: 61  PTDLSRSGDGYIGKLRSNFLGTKFTVFDNGVNPQKARL-------------VTPKVASGR 107

Query: 206 YNIAQVSYELNVLGTRGPRRMHCTMHSIPASALEPGGSVPGQAELNPRSLEDSFRNFSKS 265
             +A V YE NVLG RGPR+M   M  IP+S       VP Q   +  SL          
Sbjct: 108 QELAAVCYETNVLGFRGPRKMTVIMPGIPSSHER----VPIQPLNDQESLLS-------- 155

Query: 266 IDVSTEFSSSRFSDIVGPRDEEDEGKDRPLILRNKAPRWHEQLQCWCLNFRGRVTVASVK 325
                                +++ K+  L+L NKAPRW++QLQ + LNF GRVT ASVK
Sbjct: 156 -------------------RWQNKNKESLLVLHNKAPRWNDQLQSYVLNFHGRVTQASVK 196

Query: 326 NFQLIAATQPAAGAPTPSQPPPPPPSDHDKIILQFGKVGKDMFTMDYRYPLSAFQAFAIC 385
           NFQ++                    SD D I+LQFG+V KDMFTMDYRYPLSAFQAFAIC
Sbjct: 197 NFQIVH------------------ASDPDYIVLQFGRVAKDMFTMDYRYPLSAFQAFAIC 238

Query: 386 LSSFD 390
           LSSFD
Sbjct: 239 LSSFD 243

Length = 243
>gnl|CDD|221867 pfam12937, F-box-like, F-box-like Back     alignment and domain information
>gnl|CDD|201368 pfam00646, F-box, F-box domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 396
KOG2502355 consensus Tub family proteins [General function pr 100.0
PF01167246 Tub: Tub family; InterPro: IPR000007 Tubby, an aut 100.0
KOG2503565 consensus Tubby superfamily protein TULP4 [General 99.77
PF1293747 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 97.67
PF0064648 F-box: F-box domain; InterPro: IPR001810 The F-box 97.56
PLN03215373 ascorbic acid mannose pathway regulator 1; Provisi 97.24
smart0025641 FBOX A Receptor for Ubiquitination Targets. 96.73
PF12043346 DUF3527: Domain of unknown function (DUF3527); Int 96.59
KOG2997366 consensus F-box protein FBX9 [General function pre 87.17
>KOG2502 consensus Tub family proteins [General function prediction only] Back     alignment and domain information 
Probab=100.00  E-value=5.9e-120  Score=891.13  Aligned_cols=324  Identities=58%  Similarity=0.929  Sum_probs=278.1

Q ss_pred             CchhhhhhhhcccCCccccccceeccCCcCCCCcccCcccccCCcccccccCccCCCChHHHHHHHHHhhhcCCCCCCcc
Q 016026            1 MSFRSIVRDVRDGFGSLSRRSFEVRLPGHHGRGKSHGSVHELHDQPVVIQNSRWAGLPPELLRDVIKRLEASESTWPARK   80 (396)
Q Consensus         1 m~~~s~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wa~lppell~dv~~r~e~se~~wp~r~   80 (396)
                      |+++++++++++..      +|+.+....+ ++. +..+++.. .+.....+.|++||||||+|+|+|+||+|+.||+|+
T Consensus         1 ~~~~~~~~~~~~~~------~~~~~~~~~~-~~~-~~~~~~~~-~~s~~~~~~~~~l~~~~L~d~~~r~eese~~wp~r~   71 (355)
T KOG2502|consen    1 MGEDGPVRDPEDKS------SFRAPQGSGT-KGP-EDKSEDSG-FPSPSDQSLWAALPPELLSDVLKRDEESEDTWPSRR   71 (355)
T ss_pred             CCccCccCCCCccc------chhccccccc-ccC-CCccCCcC-CccccccchhhcCCHhHHHHHhhhcccccccccccc
Confidence            78999999998876      4554443222 111 22233321 111112289999999999999999999999999999


Q ss_pred             ceeeecccchhHHHHHHhhhcCCcccccccccccccCCCCCCceEEEEEEEecCCceEEEEeecCC--------------
Q 016026           81 HVVACAAVCRSWREMCKEIVRNPEFSGKITFPVSLKQPGPRDGTIQCFIKRDKSNLTYHLFLCLSP--------------  146 (396)
Q Consensus        81 ~vvaca~vc~~wr~~~~eiv~~pe~~g~itfpisLkqPgPrd~~iQCfIkRdK~~~tY~LYL~l~~--------------  146 (396)
                      +||+||+||+.||++++|||+.||.+|++|||++|+||||+|.++||+|+|||+|++|+||+++.+              
T Consensus        72 ~vvs~~~~~~~~r~~~~~~v~~~~~~~k~~~~~~l~qP~P~~~~~qC~I~Rdks~~~~~Ly~~l~~~l~~~d~~kfLLaa  151 (355)
T KOG2502|consen   72 NVVSCAGVCDKWREISKEIVAPPEPSSKLTFPASLKQPGPRGVLVQCYIKRDKSGMDRGLYLSLYLHLEREDNKKFLLAA  151 (355)
T ss_pred             ccccccchhhhhhhhccccccCCccccccchhHHhcCCCCCCceEEEEEEEccCCCceeeeecccccccccccceeeeee
Confidence            999999999999999999999999999999999999999999999999999999999999998743              


Q ss_pred             -----------------CCcccCCCceeeeeeecccccEEEEEcCCCCCCCCCCCCCCCCccccccccCCCCCCCceeeE
Q 016026          147 -----------------DNISRSSSTYIGKLRSNFLGTKFIIYDTQPPYNSAQLSPPGRSRRFYSKKVSPKVPTGSYNIA  209 (396)
Q Consensus       147 -----------------~dlSR~S~~YVGKLRSNFlGTkFtIYD~g~p~~~a~~~~~~rsrr~~sk~vsprvp~~~~ela  209 (396)
                                       +||||++++||||||||||||||||||+|...          +|+++      ++|+++|+||
T Consensus       152 rk~rr~~~t~yiiS~d~~~lSr~~~~yvGklRSN~lGTKFtVyD~g~~~----------~r~~~------~~~~~~~~la  215 (355)
T KOG2502|consen  152 RKRRRSKTTNYLISLDPTDLSRGSESYVGKLRSNLLGTKFTVYDNGVNP----------SRRFN------KVPSGRQELA  215 (355)
T ss_pred             eeecccccceeEEeccccccccCccceeeeeecccccceEEEecCCCCc----------ccccc------cCCcccceee
Confidence                             79999999999999999999999999996421          23333      7899999999


Q ss_pred             EEEeeecccCCCCCceeEEeecCCCccccCCCCCCCCCCccCCCCccccccccCcccccccccccCccccccCCCCCccc
Q 016026          210 QVSYELNVLGTRGPRRMHCTMHSIPASALEPGGSVPGQAELNPRSLEDSFRNFSKSIDVSTEFSSSRFSDIVGPRDEEDE  289 (396)
Q Consensus       210 ~V~Ye~NVLG~rGPRrM~cim~~IP~s~l~~gg~~p~q~~~~~~~~~e~f~s~s~~~d~~~~~~s~~~s~~~~~~~~~~~  289 (396)
                      +|+||+||||+||||||+|+|++||.++  +||++|.|++.....  ..|+..                         ..
T Consensus       216 ~V~Ye~NVLg~rGPRrM~~im~~i~~s~--~~~~v~~q~~~~~~~--~l~r~~-------------------------~k  266 (355)
T KOG2502|consen  216 AVIYETNVLGFRGPRRMTVIMPGISPSA--PGGRVPVQPENDHPS--LLFRSQ-------------------------NK  266 (355)
T ss_pred             EEEEeeccccccCCceeEEeccCCCCCC--CCCcccccccccccc--hhhhcc-------------------------cc
Confidence            9999999999999999999999999987  899999998732111  112211                         11


Q ss_pred             CCCCceEeecCCCcccccccceEeecCCeeeeccccceEEEeccCCCCCCCCCCCCCCCCCCCCCceEEEeeecCCCeeE
Q 016026          290 GKDRPLILRNKAPRWHEQLQCWCLNFRGRVTVASVKNFQLIAATQPAAGAPTPSQPPPPPPSDHDKIILQFGKVGKDMFT  369 (396)
Q Consensus       290 ~~~~~lvL~nK~P~W~e~lq~~~LnF~GRVt~aSVKNFQLv~~~~p~~~~~~~~q~~~~~~~~~~~viLQFGKv~kd~Ft  369 (396)
                      .++++++|+||+|+|||++||||||||||||+||||||||||+                  .++++|||||||||||+||
T Consensus       267 ~~e~~lvL~NK~P~wne~~q~~~LNF~GRVT~ASVKNFQLv~~------------------~~p~~iiLQFGrV~kD~FT  328 (355)
T KOG2502|consen  267 DKEGLLVLKNKTPRWNEETQSYCLNFHGRVTQASVKNFQLVHA------------------LDPEYIILQFGRVGKDVFT  328 (355)
T ss_pred             CcccceEeecCCCccccccceEEEecCCeEEEeeecceEEecc------------------CCCCEEEEEeeeeccceee
Confidence            3689999999999999999999999999999999999999994                  3559999999999999999


Q ss_pred             EEccCCCCHHHHHHHHHHhCccccccC
Q 016026          370 MDYRYPLSAFQAFAICLSSFDTKLACE  396 (396)
Q Consensus       370 mD~ryPlS~~QAFAIcLssfdtKlACE  396 (396)
                      |||||||||||||||||||||+|||||
T Consensus       329 mDYrYPlSa~QAFaIcLSSFdtKlaCe  355 (355)
T KOG2502|consen  329 MDYRYPLSAFQAFAICLSSFDTKLACE  355 (355)
T ss_pred             ecccCccHHHHHHHHHHHhccccccCC
Confidence            999999999999999999999999998

>PF01167 Tub: Tub family; InterPro: IPR000007 Tubby, an autosomal recessive mutation, mapping to mouse chromosome 7, was recently found to be the result of a splicing defect in a novel gene with unknown function Back     alignment and domain information
>KOG2503 consensus Tubby superfamily protein TULP4 [General function prediction only] Back     alignment and domain information
>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B Back     alignment and domain information
>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ] Back     alignment and domain information
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional Back     alignment and domain information
>smart00256 FBOX A Receptor for Ubiquitination Targets Back     alignment and domain information
>PF12043 DUF3527: Domain of unknown function (DUF3527); InterPro: IPR021916 This presumed domain is functionally uncharacterised Back     alignment and domain information
>KOG2997 consensus F-box protein FBX9 [General function prediction only] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query396
1s31_A273 Crystal Structure Analysis Of The Human Tub Protein 3e-36
1c8z_A265 C-Terminal Domain Of Mouse Brain Tubby Protein Leng 7e-36
1i7e_A265 C-Terminal Domain Of Mouse Brain Tubby Protein Boun 2e-35
2fim_A276 Structure Of The C-Terminal Domain Of Human Tubby-L 2e-34
3c5n_A246 Structure Of Human Tulp1 In Complex With Ip3 Length 3e-31
>pdb|1S31|A Chain A, Crystal Structure Analysis Of The Human Tub Protein (isoform A) Spanning Residues 289 Through 561 Length = 273 Back     alignment and structure 
Iteration: 1

 Score =  149 bits (376), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 106/315 (33%), Positives = 145/315 (46%), Gaps = 100/315 (31%)
Query: 117 QPGPRDGTIQCFIKRDKSNL------TYHLFL--------------------------CL 144
           +P P+  TI+C I RDK  +      TY L L                           +
Sbjct: 24  RPAPQGITIKCRITRDKKGMDRGMFPTYFLHLDREDGKKVFLLAGRKRKKSKTSNYLISV 83
Query: 145 SPDNISRSSSTYIGKLRSNFLGTKFIIYD--TQPPYNSAQLSPPGRSRRFYSKKVSPKVP 202
            P ++SR   +YIGKLRSN +GTKF +YD    P   S+     G  R+           
Sbjct: 84  DPTDLSRGGDSYIGKLRSNLMGTKFTVYDNGVNPQKASSSTLESGTLRQ----------- 132
Query: 203 TGSYNIAQVSYELNVLGTRGPRRMHCTMHSIPASALEPG-GSVPGQAELNPRSLEDSFRN 261
                +A V YE NVLG +GPR+M         S + PG   V  +  + PR+  ++   
Sbjct: 133 ----ELAAVCYETNVLGFKGPRKM---------SVIVPGMNMVHERVSIRPRNEHETLL- 178
Query: 262 FSKSIDVSTEFSSSRFSDIVGPRDEEDEGKDRPLILRNKAPRWHEQLQCWCLNFRGRVTV 321
                        +R+         +++  +  + L+NK P W++  Q + LNF GRVT 
Sbjct: 179 -------------ARW---------QNKNTESIIELQNKTPVWNDDTQSYVLNFHGRVTQ 216
Query: 322 ASVKNFQLIXXXXXXXXXXXXXXXXXXXXXDHDKIILQFGKVGKDMFTMDYRYPLSAFQA 381
           ASVKNFQ+I                     D D I++QFG+V +D+FTMDY YPL A QA
Sbjct: 217 ASVKNFQIIHGN------------------DPDYIVMQFGRVAEDVFTMDYNYPLCALQA 258
Query: 382 FAICLSSFDTKLACE 396
           FAI LSSFD+KLACE
Sbjct: 259 FAIALSSFDSKLACE 273
>pdb|1C8Z|A Chain A, C-Terminal Domain Of Mouse Brain Tubby Protein Length = 265 Back     alignment and structure
>pdb|1I7E|A Chain A, C-Terminal Domain Of Mouse Brain Tubby Protein Bound To Phosphatidylinositol 4,5-Bis-Phosphate Length = 265 Back     alignment and structure
>pdb|2FIM|A Chain A, Structure Of The C-Terminal Domain Of Human Tubby-Like Protein 1 Length = 276 Back     alignment and structure
>pdb|3C5N|A Chain A, Structure Of Human Tulp1 In Complex With Ip3 Length = 246 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query396
2fim_A276 Tubby related protein 1; tubby filled-barrel, beta 3e-79
3c5n_A246 Tubby-related protein 1; inositol, signalling, alt 1e-75
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-05
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-05
1fs1_A53 SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, L 8e-04
>2fim_A Tubby related protein 1; tubby filled-barrel, beta-barrel, filled-beta-roll, 12-stran barrel, helix-filled-barrel, retinitis pigmentosa; HET: 3DP; 1.90A {Homo sapiens} PDB: 1s31_A* Length = 276 Back     alignment and structure
 Score =  244 bits (623), Expect = 3e-79
 Identities = 93/312 (29%), Positives = 130/312 (41%), Gaps = 94/312 (30%)

Query: 115 LKQPGPRDGTIQCFIKRDKSNLTYHLFLCLSP---------------------------- 146
           + +P P+  T++C + RDK  +   ++                                 
Sbjct: 29  VLRPAPQGRTVRCRLTRDKKGMDRGMYPSYFLHLDTEKKVFLLAGRKRKRSKTANYLISI 88

Query: 147 --DNISRSSSTYIGKLRSNFLGTKFIIYDTQPPYNSAQLSPPGRSRRFYSKKVSPKVPTG 204
              N+SR    +IGKLRSN LG +F ++D                     +  S  V + 
Sbjct: 89  DPTNLSRGGENFIGKLRSNLLGNRFTVFDNGQNP---------------QRGYSTNVASL 133

Query: 205 SYNIAQVSYELNVLGTRGPRRMHCTMHSIPASALEPGGSVPGQAELNPRSLEDSFRNFSK 264
              +A V YE NVLG RGPRRM   +  + A           +  + PR+  D      +
Sbjct: 134 RQELAAVIYETNVLGFRGPRRMTVIIPGMSAEN--------ERVPIRPRNASDGLLVRWQ 185

Query: 265 SIDVSTEFSSSRFSDIVGPRDEEDEGKDRPLILRNKAPRWHEQLQCWCLNFRGRVTVASV 324
           +                       +  +  + L NK P W++    + LNF+GRVT ASV
Sbjct: 186 N-----------------------KTLESLIELHNKPPVWNDDSGSYTLNFQGRVTQASV 222

Query: 325 KNFQLIAATQPAAGAPTPSQPPPPPPSDHDKIILQFGKVGKDMFTMDYRYPLSAFQAFAI 384
           KNFQ++                     D D I+LQFG+V +D FT+DYRYPL A QAFAI
Sbjct: 223 KNFQIVH------------------ADDPDYIVLQFGRVAEDAFTLDYRYPLCALQAFAI 264

Query: 385 CLSSFDTKLACE 396
            LSSFD KLACE
Sbjct: 265 ALSSFDGKLACE 276
>3c5n_A Tubby-related protein 1; inositol, signalling, alternative splicing, disease mutation, polymorphism, retinitis pigmentosa, sensory transduction; HET: I3P; 1.80A {Homo sapiens} PDB: 1i7e_A* 1c8z_A Length = 246 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E Length = 53 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query396
2fim_A276 Tubby related protein 1; tubby filled-barrel, beta 100.0
3c5n_A246 Tubby-related protein 1; inositol, signalling, alt 100.0
1fs1_A53 SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, L 98.0
2ast_B336 S-phase kinase-associated protein 2; SCF-substrate 96.56
2e31_A297 FBS1, F-box only protein 2; ubiquitin, SCF, ubiqui 96.3
2p1m_B 594 Transport inhibitor response 1 protein; F-BOX, leu 95.58
2ovr_B445 FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 94.17
3v7d_B 464 Cell division control protein 4; WD 40 domain, pho 93.98
3l2o_B312 F-box only protein 4; small G protein fold, UBL co 92.27
1p22_A435 F-BOX/WD-repeat protein 1A; ubiquitination, degrad 91.05
3ogk_B 592 Coronatine-insensitive protein 1; leucine rich rep 89.07
>2fim_A Tubby related protein 1; tubby filled-barrel, beta-barrel, filled-beta-roll, 12-stran barrel, helix-filled-barrel, retinitis pigmentosa; HET: 3DP; 1.90A {Homo sapiens} PDB: 1s31_A* Back     alignment and structure
Probab=100.00  E-value=1.3e-81  Score=608.38  Aligned_cols=220  Identities=44%  Similarity=0.744  Sum_probs=163.4

Q ss_pred             ccccCCCCCCceEEEEEEEecCCc------eEEEEeecCC------------------------CCcccCCCceeeeeee
Q 016026          113 VSLKQPGPRDGTIQCFIKRDKSNL------TYHLFLCLSP------------------------DNISRSSSTYIGKLRS  162 (396)
Q Consensus       113 isLkqPgPrd~~iQCfIkRdK~~~------tY~LYL~l~~------------------------~dlSR~S~~YVGKLRS  162 (396)
                      -.|+||||+|++|||+|+|||+|+      +|||||+.+.                        +||||++++|||||||
T Consensus        27 ~fl~~P~P~~~~iqC~I~R~k~g~~~g~yp~y~L~l~~~~~~fLLaarK~k~~~ts~YiIS~d~~dlsr~s~~yvGKLrS  106 (276)
T 2fim_A           27 EFVLRPAPQGRTVRCRLTRDKKGMDRGMYPSYFLHLDTEKKVFLLAGRKRKRSKTANYLISIDPTNLSRGGENFIGKLRS  106 (276)
T ss_dssp             TGGGSCCCTTCCEEEEEEEEC-------CCEEEEEECSSSCEEEEEEEECTTCSSCEEEEESCTTC------CEEEEEEE
T ss_pred             HHhcCCCCCCCeEEEEEEEeCCCCCCCCceEEEEEEeCCCCEEEEEEEeccCCCCceEEEEecchhcccCCceEEEEEEE
Confidence            458999999999999999999984      9999997432                        7999999999999999


Q ss_pred             cccccEEEEEcCCCCCCCCCCCCCCCCccccccccCCCCCCCceeeEEEEeeecccCCCCCceeEEeecCCCccccCCCC
Q 016026          163 NFLGTKFIIYDTQPPYNSAQLSPPGRSRRFYSKKVSPKVPTGSYNIAQVSYELNVLGTRGPRRMHCTMHSIPASALEPGG  242 (396)
Q Consensus       163 NFlGTkFtIYD~g~p~~~a~~~~~~rsrr~~sk~vsprvp~~~~ela~V~Ye~NVLG~rGPRrM~cim~~IP~s~l~~gg  242 (396)
                      ||+||||||||+|.+++.+               .+|+++++++|||+|+||+||||++|||+|+|+|+   .++ ++|+
T Consensus       107 NflGtkF~iyD~G~~p~~~---------------~s~~~~~~r~el~~V~Ye~nvlg~~gPR~m~v~iP---~~~-~~~~  167 (276)
T 2fim_A          107 NLLGNRFTVFDNGQNPQRG---------------YSTNVASLRQELAAVIYETNVLGFRGPRRMTVIIP---GMS-AENE  167 (276)
T ss_dssp             CSSSSEEEEECSSBCGGGC---------------TTSCGGGBCCEEEEEEEC---------CCEEEEEE---CBC-TTSC
T ss_pred             ccCCCEEEEECCCCCcccc---------------cCcccccccEEEEEEEEEecccCCCCCeEEEEEec---Ccc-cCCC
Confidence            9999999999999754321               35667788999999999999999999999999964   443 4566


Q ss_pred             CCCCCCccCCCCccccccccCcccccccccccCccccccCCCCCcccCCCCceEeecCCCcccccccceEeecCCeeeec
Q 016026          243 SVPGQAELNPRSLEDSFRNFSKSIDVSTEFSSSRFSDIVGPRDEEDEGKDRPLILRNKAPRWHEQLQCWCLNFRGRVTVA  322 (396)
Q Consensus       243 ~~p~q~~~~~~~~~e~f~s~s~~~d~~~~~~s~~~s~~~~~~~~~~~~~~~~lvL~nK~P~W~e~lq~~~LnF~GRVt~a  322 (396)
                      .+|.++    ...++++.         ..+.              +...+++++|+||+|+|||++|||||||+||||+|
T Consensus       168 ~~~~~p----~~~~~~ll---------~~~~--------------~~~~~~~~~l~nK~P~wne~~~~y~LnF~GRVt~a  220 (276)
T 2fim_A          168 RVPIRP----RNASDGLL---------VRWQ--------------NKTLESLIELHNKPPVWNDDSGSYTLNFQGRVTQA  220 (276)
T ss_dssp             BCCCCC----SSTTCSHH---------HHHH--------------HTCCTTEEEEEECCCEEETTTTEEECCCTTCCCSC
T ss_pred             EecccC----CCcccccc---------hhhh--------------ccCCcceEeeeccCCcccccCCEEEEecCCeeecc
Confidence            665443    22222211         1111              12457899999999999999999999999999999


Q ss_pred             cccceEEEeccCCCCCCCCCCCCCCCCCCCCCceEEEeeecCCCeeEEEccCCCCHHHHHHHHHHhCccccccC
Q 016026          323 SVKNFQLIAATQPAAGAPTPSQPPPPPPSDHDKIILQFGKVGKDMFTMDYRYPLSAFQAFAICLSSFDTKLACE  396 (396)
Q Consensus       323 SVKNFQLv~~~~p~~~~~~~~q~~~~~~~~~~~viLQFGKv~kd~FtmD~ryPlS~~QAFAIcLssfdtKlACE  396 (396)
                      ||||||||+.                  +++++||||||||++|+|||||+|||||||||||||||||+|||||
T Consensus       221 SvKNFQLv~~------------------~d~~~ivlQFGKv~~d~FtmD~~yPlS~~QAFaI~LsSfd~Klace  276 (276)
T 2fim_A          221 SVKNFQIVHA------------------DDPDYIVLQFGRVAEDAFTLDYRYPLCALQAFAIALSSFDGKLACE  276 (276)
T ss_dssp             CTTCEEEECT------------------TCTTSCSEEEEEEETTEEEEEECTTCCHHHHHHHHHHTCC------
T ss_pred             ccceEEEEec------------------CCCCEEEEEEeecCCCeEEEEecCCCCHHHHHHHHHHhcccccccC
Confidence            9999999983                  4678999999999999999999999999999999999999999998
>3c5n_A Tubby-related protein 1; inositol, signalling, alternative splicing, disease mutation, polymorphism, retinitis pigmentosa, sensory transduction; HET: I3P; 1.80A {Homo sapiens} PDB: 1i7e_A* 1c8z_A Back     alignment and structure
>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E Back     alignment and structure
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Back     alignment and structure
>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A Back     alignment and structure
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Back     alignment and structure
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* Back     alignment and structure
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* Back     alignment and structure
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens} Back     alignment and structure
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 Back     alignment and structure
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 396
d1c8za_265 d.23.1.1 (A:) Transcriptional factor tubby, C-term 2e-86
d1fs1a141 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [ 1e-04
>d1c8za_ d.23.1.1 (A:) Transcriptional factor tubby, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 265 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: Tubby C-terminal domain-like
superfamily: Tubby C-terminal domain-like
family: Transcriptional factor tubby, C-terminal domain
domain: Transcriptional factor tubby, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  261 bits (667), Expect = 2e-86
 Identities = 95/314 (30%), Positives = 136/314 (43%), Gaps = 94/314 (29%)

Query: 115 LKQPGPRDGTIQCFIKRDKSNLTYHLFLC------------------------------- 143
             +P P+  TI+C I RDK  +   +F                                 
Sbjct: 14  ALRPAPQGITIKCRITRDKKGMDRGMFPTYFLHLDREDGKKVFLLAGRKRKKSKTSNYLI 73

Query: 144 -LSPDNISRSSSTYIGKLRSNFLGTKFIIYDTQPPYNSAQLSPPGRSRRFYSKKVSPKVP 202
            + P ++SR   +YIGKLRSN +GTKF +YD                    +   + +  
Sbjct: 74  SVDPTDLSRGGDSYIGKLRSNLMGTKFTVYDNGVNPQ-------------KASSSTLESG 120

Query: 203 TGSYNIAQVSYELNVLGTRGPRRMHCTMHSIPASALEPGGSVPGQAELNPRSLEDSFRNF 262
           T    +A V YE NVLG +GPR+M   +  +             +  + PR+  ++    
Sbjct: 121 TLRQELAAVCYETNVLGFKGPRKMSVIVPGMNMV--------HERVCIRPRNEHETL--- 169

Query: 263 SKSIDVSTEFSSSRFSDIVGPRDEEDEGKDRPLILRNKAPRWHEQLQCWCLNFRGRVTVA 322
                                   +++  +  + L+NK P W++  Q + LNF GRVT A
Sbjct: 170 --------------------LARWQNKNTESIIELQNKTPVWNDDTQSYVLNFHGRVTQA 209

Query: 323 SVKNFQLIAATQPAAGAPTPSQPPPPPPSDHDKIILQFGKVGKDMFTMDYRYPLSAFQAF 382
           SVKNFQ+I                    +D D I++QFG+V +D+FTMDY YPL A QAF
Sbjct: 210 SVKNFQIIH------------------GNDPDYIVMQFGRVAEDVFTMDYNYPLCALQAF 251

Query: 383 AICLSSFDTKLACE 396
           AI LSSFD+KLACE
Sbjct: 252 AIALSSFDSKLACE 265
>d1fs1a1 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 41 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query396
d1c8za_265 Transcriptional factor tubby, C-terminal domain {M 100.0
d1fs1a141 Skp2 {Human (Homo sapiens) [TaxId: 9606]} 97.93
d2ovrb1102 F-box/WD repeat-containing protein 7, FBXW7 {Human 96.98
d1nexb1100 Cdc4 F-box and linker domains {Baker's yeast (Sacc 96.63
d1p22a1118 F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom 94.35
>d1c8za_ d.23.1.1 (A:) Transcriptional factor tubby, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Tubby C-terminal domain-like
superfamily: Tubby C-terminal domain-like
family: Transcriptional factor tubby, C-terminal domain
domain: Transcriptional factor tubby, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=3.7e-77  Score=572.20  Aligned_cols=221  Identities=45%  Similarity=0.747  Sum_probs=182.7

Q ss_pred             cccCCCCCCceEEEEEEEecCCc------eEEEEeecCC--------------------------CCcccCCCceeeeee
Q 016026          114 SLKQPGPRDGTIQCFIKRDKSNL------TYHLFLCLSP--------------------------DNISRSSSTYIGKLR  161 (396)
Q Consensus       114 sLkqPgPrd~~iQCfIkRdK~~~------tY~LYL~l~~--------------------------~dlSR~S~~YVGKLR  161 (396)
                      .|.||||||++|||+|+|||+++      +|+|||+...                          +|+||+|++||||||
T Consensus        13 Fl~qP~Pr~~~iqC~IkR~k~~~~~~l~~~Y~l~l~~~~gk~kfLLaArK~r~~~~~~yiIS~~~~d~sr~s~~yvGKlr   92 (265)
T d1c8za_          13 FALRPAPQGITIKCRITRDKKGMDRGMFPTYFLHLDREDGKKVFLLAGRKRKKSKTSNYLISVDPTDLSRGGDSYIGKLR   92 (265)
T ss_dssp             HHHCCCCTTCCEEEEEEECSSCSSSSCCCEEEEEEECTTSCEEEEEEEEEEESSSSEEEEEESCHHHHTTTCCCCSEEEE
T ss_pred             HhcCCCCCCCcEEEEEEEccCCCcCccceeEEEEEccCCCceeEEEEEeeecCCCcceEEEEccHHHhcccccceeEEee
Confidence            48999999999999999999876      7999998643                          689999999999999


Q ss_pred             ecccccEEEEEcCCCCCCCCCCCCCCCCccccccccCCCCCCCceeeEEEEeeecccCCCCCceeEEeecCCCccccCCC
Q 016026          162 SNFLGTKFIIYDTQPPYNSAQLSPPGRSRRFYSKKVSPKVPTGSYNIAQVSYELNVLGTRGPRRMHCTMHSIPASALEPG  241 (396)
Q Consensus       162 SNFlGTkFtIYD~g~p~~~a~~~~~~rsrr~~sk~vsprvp~~~~ela~V~Ye~NVLG~rGPRrM~cim~~IP~s~l~~g  241 (396)
                      |||+||||||||+|.+++.++..             +....+.++|||+|+||+||||+||||+|+|+||.|+.+    +
T Consensus        93 SNflGTkF~iYD~G~~p~~~~~~-------------~~~~~~~r~ela~V~Ye~n~l~~rGPR~m~~~ip~~~~~----~  155 (265)
T d1c8za_          93 SNLMGTKFTVYDNGVNPQKASSS-------------TLESGTLRQELAAVCYETNVLGFKGPRKMSVIVPGMNMV----H  155 (265)
T ss_dssp             ECTTSSEEEEECSSBCGGGCCTT-------------GGGSSSBCCEEEEEEECCCCSSCCSCCCEEEEEECBCTT----S
T ss_pred             ccccCCEEEEecCCCCccccccc-------------ccccCccceeeeEEEEeeehhccCCCceeEEEecCCCcc----c
Confidence            99999999999999877655432             112234578999999999999999999999999887643    1


Q ss_pred             CCCCCCCccCCCCccccccccCcccccccccccCccccccCCCCCcccCCCCceEeecCCCcccccccceEeecCCeeee
Q 016026          242 GSVPGQAELNPRSLEDSFRNFSKSIDVSTEFSSSRFSDIVGPRDEEDEGKDRPLILRNKAPRWHEQLQCWCLNFRGRVTV  321 (396)
Q Consensus       242 g~~p~q~~~~~~~~~e~f~s~s~~~d~~~~~~s~~~s~~~~~~~~~~~~~~~~lvL~nK~P~W~e~lq~~~LnF~GRVt~  321 (396)
                      ...+    +.|....++.         ...+.              ...++++++|+||+|+||+++|||||||+||||+
T Consensus       156 ~~~~----~~p~~~~~~~---------~~~~~--------------~~~~~~~~~l~~k~P~~n~~~~~~~LnF~gRv~~  208 (265)
T d1c8za_         156 ERVC----IRPRNEHETL---------LARWQ--------------NKNTESIIELQNKTPVWNDDTQSYVLNFHGRVTQ  208 (265)
T ss_dssp             CBCC----CCCSSTTSSH---------HHHHH--------------TTCCSSEEEEEECCCEEETTTTEEEEEETTEEEE
T ss_pred             cccc----cCCCCcchhh---------hHHhh--------------ccCcccceEEecCCCeeeccCCEEEeccCCEEec
Confidence            1111    1121111110         01111              1256789999999999999999999999999999


Q ss_pred             ccccceEEEeccCCCCCCCCCCCCCCCCCCCCCceEEEeeecCCCeeEEEccCCCCHHHHHHHHHHhCccccccC
Q 016026          322 ASVKNFQLIAATQPAAGAPTPSQPPPPPPSDHDKIILQFGKVGKDMFTMDYRYPLSAFQAFAICLSSFDTKLACE  396 (396)
Q Consensus       322 aSVKNFQLv~~~~p~~~~~~~~q~~~~~~~~~~~viLQFGKv~kd~FtmD~ryPlS~~QAFAIcLssfdtKlACE  396 (396)
                      |||||||||+.                  ++++++|||||||++|+|+|||+|||||+|||||||||||+|||||
T Consensus       209 ~SvKNFql~~~------------------~~~~~~~lqfgKv~~~~f~~d~~~Pls~~qaF~i~lssf~~Klace  265 (265)
T d1c8za_         209 ASVKNFQIIHG------------------NDPDYIVMQFGRVAEDVFTMDYNYPLCALQAFAIALSSFDSKLACE  265 (265)
T ss_dssp             CBTTEEEEECT------------------TCTTSCSEEEEEEETTEEEEEECTTCCHHHHHHHHHHHHHSSCCCC
T ss_pred             cccceEEEEeC------------------CCCCEEEEEEEEccCCeEEEEecCCCCHHHHHHHHHHHhccccccC
Confidence            99999999983                  5678899999999999999999999999999999999999999998
>d1fs1a1 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2ovrb1 a.158.1.1 (B:2263-2364) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1nexb1 a.158.1.1 (B:270-369) Cdc4 F-box and linker domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1p22a1 a.158.1.1 (A:135-252) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure