Citrus Sinensis ID: 016056

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390------
Protein Sequence
MLQMQCLNLAPKFNPLQSPGCSRKFASPIVTQRHKSSIKCSSQSSFSFPNQNKISHNNNKPPCKPLVPLALQDGHALQQSEDDNKPAAAPSFLEVVKRKLNAISHVTRYYAQINIIVSVTSVCFLPVQSLSQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDVEIDKINKPYLPLASGELSMGTGIAICAGSALLSLALAFLSGSPAVLCAVIAWGLTGAAYSVPLPFLRWKSHTFMAPFTLVILMGLILQIPYFIHSQTYLLGKPFEVTGPFVFATAIMSIYAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKVLPLCVNMMLLGYGGAVVAGATSTLMISKLVTIIGHIILALMMWLRSRKVDLDNFDSQFGFYMFLWQLNYVEYILIHFLR
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
cccccHHccccccccccccccccccccccccccccccEEEcccccccccccccccccccccccccccHHHHHcccccccccccccccccccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHEHHHHHccccHHHcccccccccccccccHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHccccccHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHccccccccHHccccEEEEEccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
mlqmqclnlapkfnplqspgcsrkfaspivtqrhkssikcssqssfsfpnqnkishnnnkppckplvplalqdghalqqseddnkpaaapSFLEVVKRKLNAISHVTRYYAQINIIVSVTSVcflpvqslsqvtPAFLLGVLKAVVAQIFMNISLCSLNQICDVeidkinkpylplasgelsmgTGIAICAGSALLSLALAFLSGSPAVLCAVIAWGltgaaysvplpflrwkshtfmapFTLVILMGLILQIpyfihsqtyllgkpfevtgpfvFATAIMSIYAFVNGLlkdlpdvegdkafGMQTLCVLLGKEKVLPLCVNMMLLGYGGAVVAGATSTLMISKLVTIIGHIILALMMWLRSRKvdldnfdsqfGFYMFLWQLNYVEYILIHFLR
Flexible Loop (DISEMBL)
MLQMQCLNLapkfnplqspgcSRKFASPIVTQRHKSSIKCSSQSSFSFPNQNKISHNNNKPPCKPLVPLALQDGHALQQSEDDNKPAAAPSFLEVVKRKLNAISHVTRYYAQINIIVSVTSVCFLPVQSLSQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDVEIDKINKPYLPLASGELSMGTGIAICAGSALLSLALAFLSGSPAVLCAVIAWGLTGAAYSVPLPFLRWKSHTFMAPFTLVILMGLILQIPYFIHSQTYLLGKPFEVTGPFVFATAIMSIYAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKVLPLCVNMMLLGYGGAVVAGATSTLMISKLVTIIGHIILALMMWLRSRKVDLDNFDSQFGFYMFLWQLNYVEYILIHFLR
Low Complexity Region (SEG)
MLQMQCLNLAPKFNPLQSPGCSRKFASPIVTQRHKssikcssqssfsFPNQNKISHNNNKPPCKPLVPLALQDGHALQQSEDDNKPAAAPSFLEVVKRKLNAISHVTRYYAQINIIVSVTSVCFLPVQSLSQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDVEIDKINKPYLPLASGELSMGTGIAICagsallslalaflsgsPAVLCAVIAWGLTGAAYSVPLPFLRWKSHTFMAPFTLVILMGLILQIPYFIHSQTYLLGKPFEVTGPFVFATAIMSIYAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKVLPLCVNMMLLGYggavvagaTSTLMISKLVTIIGHIILALMMWLRSRKVDLDNFDSQFGFYMFLWQLNYVEYILIHFLR
Disordered region (IsUnstruct)
*******************************************************************************************FLEVVKRKLNAISHVTRYYAQINIIVSVTSVCFLPVQSLSQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDVEIDKINKPYLPLASGELSMGTGIAICAGSALLSLALAFLSGSPAVLCAVIAWGLTGAAYSVPLPFLRWKSHTFMAPFTLVILMGLILQIPYFIHSQTYLLGKPFEVTGPFVFATAIMSIYAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKVLPLCVNMMLLGYGGAVVAGATSTLMISKLVTIIGHIILALMMWLRSRKVDLDNFDSQFGFYMFLWQLNYVEYILIHFL*
Disordered Region (DISOPRED)
************************************************************************************************KRKLNAISHVTRYYAQINIIVSVTSVCFLPVQSLSQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDVEIDKINKPYLPLASGELSMGTGIAICAGSALLSLALAFLSGSPAVLCAVIAWGLTGAAYSVPLPFLRWKSHTFMAPFTLVILMGLILQIPYFIHSQTYLLGKPFEVTGPFVFATAIMSIYAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKVLPLCVNMMLLGYGGAVVAGATSTLMISKLVTIIGHIILALMMWLRSRKVDLDNFDSQFGFYMFLWQLNYVEYILIHFLR
Disordered Region (DISEMBL)
MLQMQCLNLAPKFNPLQSPGCSRKFASP********************PNQNKISHNNNKPPCKPLVPLALQDGHALQQSEDDNKPAAAPSFLEVVKRKLNAISHVTRYYAQINIIVSVTSVCFLPVQSLSQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDVEIDKINKPYLPLASGELSMGTGIAICAGSALLSLALAFLSGSPAVLCAVIAWGLTGAAYSVPLPFLRWKSHTFMAPFTLVILMGLILQIPYFIHSQTYLLGKPFEVTGPFVFATAIMSIYAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKVLPLCVNMMLLGYGGAVVAGATSTLMISKLVTIIGHIILALMMWLRSRKVDLDNFDSQFGFYMFLWQLNYVEYILIHFLR
Disordered Region (DISPRO)
****QCLNLAPKFNPLQSPGCSRKFASPIVTQRHKSSIKCS**SSFSFPNQNK***********************************APSFLEVVKRKLNAISHVTRYYAQINIIVSVTSVCFLPVQSLSQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDVEIDKINKPYLPLASGELSMGTGIAICAGSALLSLALAFLSGSPAVLCAVIAWGLTGAAYSVPLPFLRWKSHTFMAPFTLVILMGLILQIPYFIHSQTYLLGKPFEVTGPFVFATAIMSIYAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKVLPLCVNMMLLGYGGAVVAGATSTLMISKLVTIIGHIILALMMWLRSRKVDLDNFDSQFGFYMFLWQLNYVEYILIHFLR
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHi
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHoooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MLQMQCLNLAPKFNPLQSPGCSRKFASPIVTQRHKSSIKCSSQSSFSFPNQNKISHNNNKPPCKPLVPLALQDGHALQQSEDDNKPAAAPSFLEVVKRKLNAISHVTRYYAQINIIVSVTSVCFLPVQSLSQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDVEIDKINKPYLPLASGELSMGTGIAICAGSALLSLALAFLSGSPAVLCAVIAWGLTGAAYSVPLPFLRWKSHTFMAPFTLVILMGLILQIPYFIHSQTYLLGKPFEVTGPFVFATAIMSIYAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKVLPLCVNMMLLGYGGAVVAGATSTLMISKLVTIIGHIILALMMWLRSRKVDLDNFDSQFGFYMFLWQLNYVEYILIHFLR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	396	2.2.26 [Sep-21-2011]
B7FA90	404	Probable homogentisate ph	yes	no	0.984	0.965	0.373	8e-73
Q8VWJ1	393	Homogentisate phytyltrans	yes	no	0.757	0.763	0.423	2e-71
B1B3P3	410	Naringenin 8-dimethylally	N/A	no	0.929	0.897	0.342	7e-60
B9A1Q4	409	Glycinol 4-dimethylallylt	no	no	0.767	0.743	0.371	5e-57
Q1ACB3	386	Homogentisate phytyltrans	no	no	0.669	0.686	0.308	1e-26
Q0D576	379	Probable homogentisate ph	no	no	0.616	0.643	0.293	4e-22
Q9Z5D6	302	Bacteriochlorophyll synth	yes	no	0.441	0.579	0.277	2e-06
B1L6Z7	281	Digeranylgeranylglyceryl	yes	no	0.356	0.501	0.280	6e-06
P26170	304	Bacteriochlorophyll synth	yes	no	0.409	0.532	0.252	1e-05
Q12VF3	281	Digeranylgeranylglyceryl	yes	no	0.338	0.476	0.270	2e-05

>sp|B7FA90|HPT1_ORYSJ Probable homogentisate phytyltransferase 1, chloroplastic OS=Oryza sativa subsp. japonica GN=HPT1 PE=2 SV=1

 Score =  274 bits (701), Expect = 8e-73,   Method: Compositional matrix adjust.
 Identities = 152/407 (37%), Positives = 236/407 (57%), Gaps = 17/407 (4%)

Query: 4   MQCLNLAPKFNPLQSPGCSR-------KFASPI--VTQRHKSSIKCSSQSSF--SFPNQN 52
           M  L L P     ++PG +         F  P+  + +  K  +  SSQ +   SF    
Sbjct: 1   MDSLRLRPSLLAARAPGAASLPPLRRDHFLPPLCSIHRNGKRPVSLSSQRTQGPSFDQCQ 60

Query: 53  KI---SHNNNKPPCKPLVPLALQDGHALQQSEDDNKPAAAPSFLEVVKRKLNAISHVTRY 109
           K      ++++ P +P    A   G  LQ S + +  +   S  + +   L+A    +R 
Sbjct: 61  KFFGWKSSHHRIPHRPTSSSADASGQPLQSSAEAHDSS---SIWKPISSSLDAFYRFSRP 117

Query: 110 YAQINIIVSVTSVCFLPVQSLSQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDVEIDKI 169
           +  I   +S+ SV  L V++LS V+P FL G+L+AVVA +FMNI +  LNQ+ D+EIDK+
Sbjct: 118 HTVIGTALSIVSVSLLAVENLSDVSPLFLTGLLEAVVAALFMNIYIVGLNQLFDIEIDKV 177

Query: 170 NKPYLPLASGELSMGTGIAICAGSALLSLALAFLSGSPAVLCAVIAWGLTGAAYSVPLPF 229
           NKP LPLASGE S  TG+A+ +  A +S  L +  GS  +  A+    + G AYS+ LPF
Sbjct: 178 NKPTLPLASGEYSPATGVALVSAFAAMSFGLGWAVGSQPLFLALFISFILGTAYSINLPF 237

Query: 230 LRWKSHTFMAPFTLVILMGLILQIPYFIHSQTYLLGKPFEVTGPFVFATAIMSIYAFVNG 289
           LRWK    +A   ++ +  +I+Q+ +F+H QT++  +P   T P +FATA M+ ++ V  
Sbjct: 238 LRWKRSAVVAALCILAVRAVIVQLAFFLHIQTFVFRRPAVFTRPLIFATAFMTFFSVVIA 297

Query: 290 LLKDLPDVEGDKAFGMQTLCVLLGKEKVLPLCVNMMLLGYGGAVVAGATSTLMISKLVTI 349
           L KD+PD+EGD+ FG+++  V LG++KV  +CV ++ + Y  A++ GATS  + SK  T+
Sbjct: 298 LFKDIPDIEGDRIFGIKSFSVRLGQKKVFWICVGLLEMAYCVAILMGATSACLWSKYATV 357

Query: 350 IGHIILALMMWLRSRKVDLDNFDSQFGFYMFLWQLNYVEYILIHFLR 396
           +GH ILA ++W RSR +DL +  +   FYMF+W+L Y EY+LI  +R
Sbjct: 358 VGHAILAAILWNRSRSIDLTSKTAITSFYMFIWKLFYAEYLLIPLVR 404

Involved in the synthesis of tocopherol (vitamin E). Catalyzes the condensation of homogentisate and phytyl diphosphate to form dimethylphytylhydroquinone.
Oryza sativa subsp. japonica (taxid: 39947)
EC: 2EC: .EC: 5EC: .EC: 1EC: .EC: nEC: 8

>sp|Q8VWJ1|HPT1_ARATH Homogentisate phytyltransferase 1, chloroplastic OS=Arabidopsis thaliana GN=VTE2-1 PE=2 SV=1

 Score =  269 bits (688), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 127/300 (42%), Positives = 198/300 (66%)

Query: 97  KRKLNAISHVTRYYAQINIIVSVTSVCFLPVQSLSQVTPAFLLGVLKAVVAQIFMNISLC 156
           +  L+A    +R +  I  ++S+ SV FL V+ +S ++P    G+L+AVVA + MNI + 
Sbjct: 94  RDSLDAFYRFSRPHTVIGTVLSILSVSFLAVEKVSDISPLLFTGILEAVVAALMMNIYIV 153

Query: 157 SLNQICDVEIDKINKPYLPLASGELSMGTGIAICAGSALLSLALAFLSGSPAVLCAVIAW 216
            LNQ+ DVEIDK+NKPYLPLASGE S+ TGIAI A  +++S  L ++ GS  +  A+   
Sbjct: 154 GLNQLSDVEIDKVNKPYLPLASGEYSVNTGIAIVASFSIMSFWLGWIVGSWPLFWALFVS 213

Query: 217 GLTGAAYSVPLPFLRWKSHTFMAPFTLVILMGLILQIPYFIHSQTYLLGKPFEVTGPFVF 276
            + G AYS+ LP LRWK    +A   ++ +  +I+QI +++H QT++ G+P   T P +F
Sbjct: 214 FMLGTAYSINLPLLRWKRFALVAAMCILAVRAIIVQIAFYLHIQTHVFGRPILFTRPLIF 273

Query: 277 ATAIMSIYAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKVLPLCVNMMLLGYGGAVVAG 336
           ATA MS ++ V  L KD+PD+EGDK FG+++  V LG+++V   CV ++ + Y  A++ G
Sbjct: 274 ATAFMSFFSVVIALFKDIPDIEGDKIFGIRSFSVTLGQKRVFWTCVTLLQMAYAVAILVG 333

Query: 337 ATSTLMISKLVTIIGHIILALMMWLRSRKVDLDNFDSQFGFYMFLWQLNYVEYILIHFLR 396
           ATS  + SK+++++GH+ILA  +W R++ VDL +       YMF+W+L Y EY+L+ FL+
Sbjct: 334 ATSPFIWSKVISVVGHVILATTLWARAKSVDLSSKTEITSCYMFIWKLFYAEYLLLPFLK 393

Involved in the synthesis of tocopherol (vitamin E). Catalyzes the condensation of homogentisate and phytyl diphosphate to form dimethylphytylhydrquinone. Tocopherol functions to limit lipid oxidation during seed desiccation, quiescence and germination and early seedling development. Protects thylakoid membrane lipids from photooxidation and is required for low-temperature adaptation.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: n

EC: 8

>sp|B1B3P3|N8DT1_SOPFL Naringenin 8-dimethylallyltransferase 1, chloroplastic OS=Sophora flavescens GN=N8DT-1 PE=1 SV=1

 Score =  231 bits (589), Expect = 7e-60,   Method: Compositional matrix adjust.
 Identities = 132/385 (34%), Positives = 209/385 (54%), Gaps = 17/385 (4%)

Query: 12  KFNPLQSPGCSRKFASPIVTQRHKSSIKCSSQSSFSFPNQNKISHNNNKPPCKPLVPLAL 71
           K   +Q   C+  F+   + Q +K              N+   + N +K   K  V  A+
Sbjct: 43  KKRKIQKEHCAAIFSKHNLKQHYKV-------------NEGGSTSNTSKECEKKYVVNAI 89

Query: 72  QDGHALQQSEDDNKPAAAPSFLEVVKRKLNAISHVTRYYAQINIIVSVTSVCFLPVQSLS 131
            +    Q  E + +     S  + V   L+      R YA   I++  T    + V+ LS
Sbjct: 90  SE----QSFEYEPQTRDPESIWDSVNDALDIFYKFCRPYAMFTIVLGATFKSLVAVEKLS 145

Query: 132 QVTPAFLLGVLKAVVAQIFMNISLCSLNQICDVEIDKINKPYLPLASGELSMGTGIAICA 191
            ++ AF +G L+ VVA I ++I    LNQ+CD+EIDKINKP LPLASG+LS    + I A
Sbjct: 146 DLSLAFFIGWLQVVVAVICIHIFGVGLNQLCDIEIDKINKPDLPLASGKLSFRNVVIITA 205

Query: 192 GSALLSLALAFLSGSPAVLCAVIAWGLTGAAYSVPLPFLRWKSHTFMAPFTLVILMGLIL 251
            S +L L  A++  S  +   V    +  +AY+V LP LRWK +  +     +  + +  
Sbjct: 206 SSLILGLGFAWIVDSWPLFWTVFISCMVASAYNVDLPLLRWKKYPVLTAINFIADVAVTR 265

Query: 252 QIPYFIHSQTYLLGKPFEVTGPFVFATAIMSIYAFVNGLLKDLPDVEGDKAFGMQTLCVL 311
            + +F+H QT +  +P     P +F TAI+SIYA V  L KD+PD+EGD+ FG+Q+L + 
Sbjct: 266 SLGFFLHMQTCVFKRPTTFPRPLIFCTAIVSIYAIVIALFKDIPDMEGDEKFGIQSLSLR 325

Query: 312 LGKEKVLPLCVNMMLLGYGGAVVAGATSTLMISKLVTIIGHIILALMMWLRSRKVDLDNF 371
           LG ++V  +CV+++ + YG  ++ GATS ++ SK++T++GH +LA ++W  ++ VDL + 
Sbjct: 326 LGPKRVFWICVSLLEMTYGVTILVGATSPILWSKIITVLGHAVLASVLWYHAKSVDLTSN 385

Query: 372 DSQFGFYMFLWQLNYVEYILIHFLR 396
                FYMF+W+L+  EY LI   R
Sbjct: 386 VVLHSFYMFIWKLHTAEYFLIPLFR 410

Involved in the biosynthesis of sophoraflavanone G (SFG). Can use flavanones (naringenin, liquiritigenin and hesperetin) as substrates, but not flavonols or isoflavones. Shows a strict specificity for dimethylallyl diphosphate.

Sophora flavescens (taxid: 49840)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 7

EC: 0

>sp|B9A1Q4|G4DT_SOYBN Glycinol 4-dimethylallyltransferase OS=Glycine max GN=G4DT PE=1 SV=1

 Score =  222 bits (565), Expect = 5e-57,   Method: Compositional matrix adjust.
 Identities = 113/304 (37%), Positives = 181/304 (59%)

Query: 93  LEVVKRKLNAISHVTRYYAQINIIVSVTSVCFLPVQSLSQVTPAFLLGVLKAVVAQIFMN 152
           L+ VK  L+A    +  Y  I I +   S   L V+ LS ++ +FL+GVL+ V+ Q+F+ 
Sbjct: 106 LDSVKNVLSAFYWFSYPYTMIGITLCAFSSSLLAVEKLSDISLSFLIGVLQGVLPQLFIE 165

Query: 153 ISLCSLNQICDVEIDKINKPYLPLASGELSMGTGIAICAGSALLSLALAFLSGSPAVLCA 212
           I LC +NQ+ D+EIDKINKP+LP+ASG+ S  TG+ I A    LS    +++GS  ++C 
Sbjct: 166 IYLCGVNQLYDLEIDKINKPHLPMASGQFSFKTGVIISAAFLALSFGFTWITGSWPLICN 225

Query: 213 VIAWGLTGAAYSVPLPFLRWKSHTFMAPFTLVILMGLILQIPYFIHSQTYLLGKPFEVTG 272
           ++    +  AYS+ +P LRWK + F+A   ++    L L I YF H QT +L +P     
Sbjct: 226 LVVIASSWTAYSIDVPLLRWKRYPFVAAMCMISTWALALPISYFHHMQTVVLKRPIGFPR 285

Query: 273 PFVFATAIMSIYAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKVLPLCVNMMLLGYGGA 332
              F  A M+ Y+    L KD+PDVEGDK  G+ +  V LG+++   +CV+   + +G  
Sbjct: 286 SLGFLVAFMTFYSLGLALSKDIPDVEGDKEHGIDSFAVRLGQKRAFWICVSFFEMAFGVG 345

Query: 333 VVAGATSTLMISKLVTIIGHIILALMMWLRSRKVDLDNFDSQFGFYMFLWQLNYVEYILI 392
           ++AGA+ +   +K+ T +G+ +LA ++W +++ VDL +  S   FYMF+W+L Y  + L+
Sbjct: 346 ILAGASCSHFWTKIFTGMGNAVLASILWYQAKSVDLSDKASTGSFYMFIWKLLYAGFFLM 405

Query: 393 HFLR 396
             +R
Sbjct: 406 ALIR 409

Proposed to be involved in the biosynthesis of pterocarpan phytoalexins, specifically glyceollins. Can act as a prenyltransferase towards glycinol which is the direct precursor of glyceollins. Seems to be specific for prenylation at C-4 thus producing glyceollin I.

Glycine max (taxid: 3847)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 3

EC: 6

>sp|Q1ACB3|HPT2_ARATH Homogentisate phytyltransferase 2, chloroplastic OS=Arabidopsis thaliana GN=HPT2 PE=2 SV=1

 Score =  120 bits (302), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 84/272 (30%), Positives = 142/272 (52%), Gaps = 7/272 (2%)

Query: 127 VQSLSQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDVEIDKINKPYLPLASGELSMGTG 186
           +++   +  + +L  L  ++A I  N  +  +NQI D+ IDK+NKPYLP+A+G+LS+ + 
Sbjct: 119 IENTHLIKWSLVLKALSGLLALICGNGYIVGINQIYDIGIDKVNKPYLPIAAGDLSVQSA 178

Query: 187 IAICAGSALLSLALAFLSGSPAVLCAVIAWGL-TGAAYSVPLPFLRWKSHTFMAPFTLVI 245
             +    A+  L +   +  P  + ++ + GL  G  YSVP P LR K     A   +  
Sbjct: 179 WLLVIFFAIAGLLVVGFNFGP-FITSLYSLGLFLGTIYSVP-P-LRMKRFPVAAFLIIAT 235

Query: 246 LMGLILQIPYFIHSQTYLLGKPFEVTGPFVFATAIMSIYAFVNGLLKDLPDVEGDKAFGM 305
           + G +L    + H+    LG PF+ + P  F T+ ++++A V  + KDLPDVEGD+ F +
Sbjct: 236 VRGFLLNFGVY-HATRAALGLPFQWSAPVAFITSFVTLFALVIAITKDLPDVEGDRKFQI 294

Query: 306 QTLCVLLGKEKVLPLCVNMMLLGYGGAVVAGATSTLMISKLVTIIGHIILALMMWLRSRK 365
            TL   LG   +  L   ++L+ Y  A+        +    + I  H+ILA  +  ++  
Sbjct: 295 STLATKLGVRNIAFLGSGLLLVNYVSAISLAFYMPQVFRGSLMIPAHVILASGLIFQTWV 354

Query: 366 VDLDNFDSQF--GFYMFLWQLNYVEYILIHFL 395
           ++  N+  +   G+Y F+W L Y EY+L  FL
Sbjct: 355 LEKANYTKEAISGYYRFIWNLFYAEYLLFPFL 386

Involved in the synthesis of tocopherol (vitamin E). Catalyzes the condensation of homogentisate and phytyl diphosphate to form dimethylphytylhydrquinone.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: n

EC: 8

>sp|Q0D576|HPT2_ORYSJ Probable homogentisate phytyltransferase 2, chloroplastic OS=Oryza sativa subsp. japonica GN=HPT2 PE=3 SV=2

 Score =  105 bits (263), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 73/249 (29%), Positives = 121/249 (48%), Gaps = 5/249 (2%)

Query: 145 VVAQIFMNISLCSLNQICDVEIDKINKPYLPLASGELSMGTGIAICAGSALLSLALAFLS 204
           +VA I  N  +  +NQI D+ IDK+NKPYLP+A+G+LS+ T   +    A    ++   +
Sbjct: 130 LVALICGNGYIVGINQIYDIRIDKVNKPYLPIAAGDLSVQTAWLLVVLFAAAGFSIVVTN 189

Query: 205 GSPAVLCAVIAWGLTGAAYSVPLPFLRWKSHTFMAPFTLVILMGLILQIPYFIHSQTYLL 264
             P +          G  YSVP PF R K +   A   +  + G +L    +  ++   L
Sbjct: 190 FGPFITSLYCLGLFLGTIYSVP-PF-RLKRYPVAAFLIIATVRGFLLNFGVYYATRA-AL 246

Query: 265 GKPFEVTGPFVFATAIMSIYAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKVLPLCVNM 324
           G  F+ + P  F T  ++++A V  + KDLPDVEGD+ + + TL   LG   +  L   +
Sbjct: 247 GLTFQWSSPVAFITCFVTLFALVIAITKDLPDVEGDRKYQISTLATKLGVRNIAFLGSGL 306

Query: 325 MLLGYGGAVVAGATSTLMISKLVTIIGHIILALMMWLRSRKVDLDNF--DSQFGFYMFLW 382
           ++  Y  A+           + V +  H  LA+ +  ++  ++   +  D+   +Y F+W
Sbjct: 307 LIANYVAAIAVAFLMPQAFRRTVMVPVHAALAVGIIFQTWVLEQAKYTKDAISQYYRFIW 366

Query: 383 QLNYVEYIL 391
            L Y EYI 
Sbjct: 367 NLFYAEYIF 375

Involved in the synthesis of tocopherol (vitamin E). Catalyzes the condensation of homogentisate and phytyl diphosphate to form dimethylphytylhydrquinone.

Oryza sativa subsp. japonica (taxid: 39947)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: n

EC: 8

>sp|Q9Z5D6|BCHG_RHOS4 Bacteriochlorophyll synthase 33 kDa chain OS=Rhodobacter sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158) GN=bchG PE=4 SV=1

 Score = 53.9 bits (128), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 56/202 (27%), Positives = 93/202 (46%), Gaps = 27/202 (13%)

Query: 159 NQICDVEIDKINKPYLPLASGELSMGTGIAICAGSALLSLALAFLSGSPAVLCAVIAWGL 218
           N  CD  +D +N+P  P+ SG +    G+ I     +LSLA+ ++ G P    A +   L
Sbjct: 71  NNWCDRHVDAVNEPDRPIPSGRIPGRWGLYIALLMTVLSLAVGWMLG-PWGFGATVFGVL 129

Query: 219 TGAAYSVPLPFLRWKSHTFMAPFTLVILMGLILQ-IPYFIHSQTYLLGKPFEVTGPFVFA 277
              AYSV    +R K   +  P     L+ L  + +P+F  +     G       P  F 
Sbjct: 130 AAWAYSVEP--IRLKRSGWWGPG----LVALCYEGLPWFTGAAVLSAGA------PSFFI 177

Query: 278 TAIMSIYAF-VNGL--LKDLPDVEGDKAFGMQTLCVLLGKEKVLPLCVNMM--------- 325
             +  +YAF  +G+  L D   +EGD+  G+++L V+LG E    L   +M         
Sbjct: 178 VTVALLYAFGAHGIMTLNDFKALEGDRQHGVRSLPVMLGPEVAAKLACTVMAMAQILVIT 237

Query: 326 -LLGYGGAVVAGATSTLMISKL 346
            L+ +G  + AG  + L++++L
Sbjct: 238 LLVIWGKPIHAGIITALLVAQL 259

Catalyzes the esterification of bacteriochlorophyllide a by geranylgeraniol-PPi.

Rhodobacter sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158) (taxid: 272943)

>sp|B1L6Z7|DGGGP_KORCO Digeranylgeranylglyceryl phosphate synthase OS=Korarchaeum cryptofilum (strain OPF8) GN=Kcr_1480 PE=3 SV=1

 Score = 52.4 bits (124), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 46/164 (28%), Positives = 77/164 (46%), Gaps = 23/164 (14%)

Query: 157 SLNQICDVEIDKINKPYLPLASGELSMGTGIAICAGSALLSLALAFLSGSPAVLCAVIAW 216
           ++N   D EID INKPY P+ SG +S    + I    +L  +AL+   G    L  V A+
Sbjct: 54  AINDYYDAEIDAINKPYRPIPSGRISKREALNIYIALSLFGIALSIFLGFIEFLI-VTAF 112

Query: 217 GLTGAAYSVPLPFLRWKSHTFMAPFTLVILMGLILQIPYFIHSQTYLLGKPFEVTGPFVF 276
            L+  AY+      RW   T + P   ++ +G+         + T + G      G    
Sbjct: 113 SLSWYAYA------RWLKRTGV-PGNALVSLGV---------AFTLIFGS--LAAGNLTN 154

Query: 277 ATAIMSIYAFVNGLLKD----LPDVEGDKAFGMQTLCVLLGKEK 316
              I S  AF + L+++    + D+ GD+A G++T+ V +G ++
Sbjct: 155 KVIIFSSVAFTSNLIREFVKAVEDLPGDRAHGVRTIAVRIGVKR 198

Prenyltransferase that catalyzes the transfer of the geranylgeranyl moiety of geranylgeranyl diphosphate (GGPP) to the C2 hydroxyl of (S)-3-O-geranylgeranylglyceryl phosphate (GGGP). This reaction is the second ether-bond-formation step in the biosynthesis of archaeal membrane lipids.

Korarchaeum cryptofilum (strain OPF8) (taxid: 374847)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 4

EC: 2

>sp|P26170|BCHG_RHOCB Bacteriochlorophyll synthase 33 kDa chain OS=Rhodobacter capsulatus (strain ATCC BAA-309 / NBRC 16581 / SB1003) GN=bchG PE=4 SV=1

 Score = 51.6 bits (122), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 43/170 (25%), Positives = 75/170 (44%), Gaps = 8/170 (4%)

Query: 159 NQICDVEIDKINKPYLPLASGELSMGTGIAICAGSALLSLALAFLSGSPAVLCAVIAWGL 218
           N  CD  +D IN+P+ P+ SG +    G+ I    +LLSL + +  GS   +  ++    
Sbjct: 72  NDWCDRHVDAINEPHRPIPSGRIPGLWGLYIAIAMSLLSLVVGWQLGSWGFVATLLG--- 128

Query: 219 TGAAYSVPLPFLRWKSHTFMAPFTLVILMGLILQIPYFIHSQTYLLGKPFEVTG-PFVFA 277
             AA++  +  +R K   +  P     L+GL  +   +I     LL       G P V  
Sbjct: 129 VAAAWAYSVEPIRLKRSGWWGPG----LVGLAYEGLPWITGAAVLLATADTSPGFPIVMM 184

Query: 278 TAIMSIYAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKVLPLCVNMMLL 327
             + ++ A     + D   +EGD+  G+++L  + G E    +   +M L
Sbjct: 185 ATLYALGAHGIMTINDFKAIEGDRKLGIKSLPAVYGPEVAAKIACTVMGL 234

Catalyzes the esterification of bacteriochlorophyllide a by geranylgeraniol-PPi.

Rhodobacter capsulatus (strain ATCC BAA-309 / NBRC 16581 / SB1003) (taxid: 272942)

>sp|Q12VF3|DGGGP_METBU Digeranylgeranylglyceryl phosphate synthase OS=Methanococcoides burtonii (strain DSM 6242) GN=Mbur_1679 PE=3 SV=1

 Score = 50.8 bits (120), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 46/170 (27%), Positives = 76/170 (44%), Gaps = 36/170 (21%)

Query: 158 LNQICDVEIDKINKPYLPLASGELSMGTGIAICAGSALLSLALAFLSGSPAVLCAVIAWG 217
           LN   D+EIDK+NKP  P+ SG++S+ + +       +  + LAFL  +P  LC +IA  
Sbjct: 62  LNDYFDIEIDKVNKPSRPIPSGKISLKSALYFSLFLFITGITLAFLV-NP--LCGIIAL- 117

Query: 218 LTGAAYSVPLPFLRWKSHTFMAPFTLVILMGLILQIPYFIHSQT-YLLGKPFEVTGPFVF 276
                                    L++    + + P+F ++   YL G  F   G  VF
Sbjct: 118 --------------------FNSMVLILYAQSLKRTPFFGNASVGYLTGSTFLFGGA-VF 156

Query: 277 ATA----------IMSIYAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEK 316
             A          + ++      ++KD+ D+ GDK  G +TL +L+G +K
Sbjct: 157 GMAGLQALVVLFLLATLATIAREIVKDVEDIVGDKKDGARTLPILIGAKK 206

Prenyltransferase that catalyzes the transfer of the geranylgeranyl moiety of geranylgeranyl diphosphate (GGPP) to the C2 hydroxyl of (S)-3-O-geranylgeranylglyceryl phosphate (GGGP). This reaction is the second ether-bond-formation step in the biosynthesis of archaeal membrane lipids.

Methanococcoides burtonii (strain DSM 6242) (taxid: 259564)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 4

EC: 2

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	396
224143266	284	predicted protein [Populus trichocarpa]	0.717	1.0	0.471	2e-74
219842170	411	homogentisate geranylgeranyl transferase	0.984	0.948	0.396	5e-74
301154093	394	Chlorophyll synthase [Musa balbisiana]	0.974	0.979	0.376	2e-71
225446000	406	PREDICTED: homogentisate phytyltransfera	0.805	0.785	0.426	2e-71
51949754	411	homogentisate phytylprenyltransferase [M	0.805	0.776	0.437	4e-71
56126261	406	homogentisate geranylgeranyl transferase	0.805	0.785	0.426	4e-71
338810328	404	RecName: Full=Probable homogentisate phy	0.984	0.965	0.373	5e-71
147858275	406	hypothetical protein VITISV_043992 [Viti	0.805	0.785	0.420	9e-71
301154114	398	Chlorophyll synthase [Musa balbisiana]	0.974	0.969	0.382	1e-70
171190282	404	homogentisic acid phytyltransferase [Ses	0.800	0.784	0.419	2e-70

>gi|224143266|ref|XP_002324898.1| predicted protein [Populus trichocarpa] gi|222866332|gb|EEF03463.1| predicted protein [Populus trichocarpa]

 Score =  286 bits (731), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 134/284 (47%), Positives = 199/284 (70%)

Query: 100 LNAISHVTRYYAQINIIVSVTSVCFLPVQSLSQVTPAFLLGVLKAVVAQIFMNISLCSLN 159
           L++    +R +  I  ++ +TSV  LPV+++S+++P F +G+LKA+V  + MNI +  LN
Sbjct: 1   LHSFYQFSRPHTVIGTLIGITSVSLLPVETISELSPTFFMGLLKALVPSVLMNIYVVGLN 60

Query: 160 QICDVEIDKINKPYLPLASGELSMGTGIAICAGSALLSLALAFLSGSPAVLCAVIAWGLT 219
           Q+ DVEIDK+NKPYLPLASG+ SMGTG+AI + S L S A+  +  SP +  A++   + 
Sbjct: 61  QLFDVEIDKVNKPYLPLASGDFSMGTGVAIVSASLLASFAMGIMFQSPLLFSALLISCVL 120

Query: 220 GAAYSVPLPFLRWKSHTFMAPFTLVILMGLILQIPYFIHSQTYLLGKPFEVTGPFVFATA 279
           G+ YS+ LPFLRWK   F+A   ++I+  +++Q+ +F+H Q ++LGK   VT   VFATA
Sbjct: 121 GSVYSIELPFLRWKKQAFLAATCIMIVRAIVVQLAFFVHMQKFVLGKTTVVTRSLVFATA 180

Query: 280 IMSIYAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKVLPLCVNMMLLGYGGAVVAGATS 339
            M  ++ V  L KD+PDV+GD+ +G+Q+  V LG+E+V  LCVNM+L+ YG AVV GA+S
Sbjct: 181 FMCFFSAVIALFKDIPDVDGDRDYGIQSFSVSLGQERVFWLCVNMLLIAYGAAVVVGASS 240

Query: 340 TLMISKLVTIIGHIILALMMWLRSRKVDLDNFDSQFGFYMFLWQ 383
           T + SK +TI+GH  LA ++WLR+R VDL + DS   FYMF+W+
Sbjct: 241 TFLPSKFITILGHCTLAFILWLRARSVDLTSKDSITSFYMFIWK 284

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|219842170|dbj|BAH10642.1| homogentisate geranylgeranyl transferase [Hevea brasiliensis]

 Score =  284 bits (726), Expect = 5e-74,   Method: Compositional matrix adjust.
 Identities = 160/404 (39%), Positives = 241/404 (59%), Gaps = 14/404 (3%)

Query: 6   CLNLAPKFNPLQSPG------CSRKFASPIVTQRH-KSSIKCSSQSSFSFPNQNK----I 54
           CLN  PK+  L  PG        +K  + I+ +   K  I CS +S     N  K    +
Sbjct: 9   CLNTPPKYQVLD-PGQVTTVTVLKKQVNHILKESXCKKPIICSLRSLSWAKNSRKKELYV 67

Query: 55  SHNNNKPPCKPLVPLALQDGHALQQSEDDNKPAAAPSFLEVVKRKLNAISHVTRYYAQIN 114
             N      K  +P      + L  + +D     + S    +   LN++   +R +  I 
Sbjct: 68  LRNLRILTRKNGIPAIFLQNNWLAPNSEDGDDICSSSKRGPILEHLNSLYQFSRPHTVIG 127

Query: 115 IIVSVTSVCFLPVQSLSQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDVEIDKINKPYL 174
            I+ +TSV  LPV+++  ++P + +G+LKA+V  + MNI +  LNQ+ DVEIDK+NKPYL
Sbjct: 128 TIIGITSVSLLPVETIVDLSPTYFIGLLKALVPSVLMNIYVVGLNQLFDVEIDKVNKPYL 187

Query: 175 PLASGELSMGTGIAICAGSALLSLALAFLSGSPAVLCAVIAWGLTGAAYSVPLPFLRWKS 234
           PLASG+ SM TGI I + S LLSL +     SP +L A++     G+ YS+ LPFLRWK 
Sbjct: 188 PLASGKFSMATGILIVSASLLLSLYMGITFQSPPLLAALLISFALGSVYSIELPFLRWKK 247

Query: 235 HTFMAPFTLVILMGLILQIPYFIHSQTYLLGKPFEVTGPFVFATAIMSIYAFVNGLLKDL 294
           H F+A   ++I+  +++Q+ +F+H Q ++LGK   +    +FATA M  ++    L KD+
Sbjct: 248 HAFLAASCILIVRAMVVQLAFFVHIQKFVLGKSIFIPRSLMFATAFMCFFSAAIALFKDI 307

Query: 295 PDVEGDKAFGMQTLCVLLGKEKVLPLCVNMMLLGYGGAVVAGAT--STLMISKLVTIIGH 352
           PDVEGD+ +G+Q+  V LG+E+VL LCVNM+L+ YG AVV GA+  S+L+  KL+T+IGH
Sbjct: 308 PDVEGDRDYGIQSFSVSLGQERVLWLCVNMLLVAYGAAVVHGASSPSSLLPVKLITMIGH 367

Query: 353 IILALMMWLRSRKVDLDNFDSQFGFYMFLWQLNYVEYILIHFLR 396
             +A ++W++++ VDL +  S   FYMF+W+L Y EY LI F+R
Sbjct: 368 STIAWILWMKAQFVDLTSQKSITSFYMFIWKLFYAEYFLIPFVR 411

Source: Hevea brasiliensis

Species: Hevea brasiliensis

Genus: Hevea

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|301154093|emb|CBW30171.1| Chlorophyll synthase [Musa balbisiana]

 Score =  276 bits (705), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 151/401 (37%), Positives = 240/401 (59%), Gaps = 15/401 (3%)

Query: 4   MQCLNLAP-KFNPLQSPGCSRKF----ASPIVTQRHKSSIKCSSQSSFSFPNQNKISHNN 58
           M  L L P  F P +S  CSR+     +  ++ +    ++ CS +     P  +   HN+
Sbjct: 1   MDSLLLRPFSFFPCRSSRCSRRGCYMPSQYLIRKTSNITVGCSVEGHKWGPVNHIFGHND 60

Query: 59  NKPPCKPLVPL---ALQDGHALQQSEDDNKPAAAPSFLEVVKRKLNAISHVTRYYAQINI 115
            K     LV      L   +A  +    +KP A  S  +     LNA    +R +  I  
Sbjct: 61  RK-----LVHTRTNELSHLNATSRHPSGSKPEA--SMWKSALTSLNAFYRFSRPHTVIGT 113

Query: 116 IVSVTSVCFLPVQSLSQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDVEIDKINKPYLP 175
           I+S+ SV  L V+SL+ ++P+FL G+L+AV+A +FMNI +  LNQ+ D+EIDK+NKP LP
Sbjct: 114 IMSIISVSLLAVESLTDISPSFLTGLLEAVIAALFMNIYIVGLNQVYDIEIDKVNKPNLP 173

Query: 176 LASGELSMGTGIAICAGSALLSLALAFLSGSPAVLCAVIAWGLTGAAYSVPLPFLRWKSH 235
           LASGE S+ TG+A+   SA +S  +A++ GS  +  A+    + G AYSV LPFLRWK  
Sbjct: 174 LASGEYSLRTGVAVILTSAAMSFGVAWVVGSLPLFWALFISFILGTAYSVNLPFLRWKRF 233

Query: 236 TFMAPFTLVILMGLILQIPYFIHSQTYLLGKPFEVTGPFVFATAIMSIYAFVNGLLKDLP 295
             +A   ++ +  +++Q+ +F+H QT++  +    + P +FATA MS ++ V  L KD+P
Sbjct: 234 AVVAAVCILAVRAVVVQLAFFLHMQTFVFRRSVSFSRPLIFATAFMSFFSVVIALFKDIP 293

Query: 296 DVEGDKAFGMQTLCVLLGKEKVLPLCVNMMLLGYGGAVVAGATSTLMISKLVTIIGHIIL 355
           D+EGD+ +G+++  V LG+++V  +CV ++ + Y  A+V GATS+ + SK VT++GH +L
Sbjct: 294 DIEGDRIYGIRSFSVRLGQKRVFWICVYLLEMAYSVAMVIGATSSCLWSKFVTVLGHAVL 353

Query: 356 ALMMWLRSRKVDLDNFDSQFGFYMFLWQLNYVEYILIHFLR 396
           A ++W R+R +DL +  +   FYMF+W+L Y EY+LI  +R
Sbjct: 354 ASILWKRARSLDLMSKAAITSFYMFIWKLFYAEYLLIPLVR 394

Source: Musa balbisiana

Species: Musa balbisiana

Genus: Musa

Family: Musaceae

Order: Zingiberales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225446000|ref|XP_002267306.1| PREDICTED: homogentisate phytyltransferase 1, chloroplastic [Vitis vinifera] gi|297735423|emb|CBI17863.3| unnamed protein product [Vitis vinifera]

 Score =  276 bits (705), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 136/319 (42%), Positives = 204/319 (63%)

Query: 78  QQSEDDNKPAAAPSFLEVVKRKLNAISHVTRYYAQINIIVSVTSVCFLPVQSLSQVTPAF 137
           Q  E +   ++  S L  VK  L+A    +R +  I   +S+ SV  L V+ LS  +P F
Sbjct: 88  QPLESEPGASSPKSTLTPVKNALDAFYRFSRPHTVIGTALSIISVSLLAVEKLSDFSPLF 147

Query: 138 LLGVLKAVVAQIFMNISLCSLNQICDVEIDKINKPYLPLASGELSMGTGIAICAGSALLS 197
             GVL+AVVA + MNI +  LNQI D+EIDK+NKPYLPLASGE S+GTG+ I    A +S
Sbjct: 148 FTGVLEAVVAALLMNIYIVGLNQISDIEIDKVNKPYLPLASGEYSVGTGVGIVTSFAFMS 207

Query: 198 LALAFLSGSPAVLCAVIAWGLTGAAYSVPLPFLRWKSHTFMAPFTLVILMGLILQIPYFI 257
             + ++ GS  +  A+    + G AYS+ LP LRWK    +A   ++ +  +I+QI +++
Sbjct: 208 FLVGWIVGSWPLFWALFVSFVLGTAYSIDLPLLRWKRFALVAAMCILAVRAVIVQIAFYM 267

Query: 258 HSQTYLLGKPFEVTGPFVFATAIMSIYAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKV 317
           H QT++ G+P   + P +FATA MS ++ V  L KD+PD+EGD+ FG+++  V LG+++V
Sbjct: 268 HVQTFVYGRPAVFSRPLIFATAFMSFFSVVIALFKDIPDIEGDRIFGIRSFSVRLGQKRV 327

Query: 318 LPLCVNMMLLGYGGAVVAGATSTLMISKLVTIIGHIILALMMWLRSRKVDLDNFDSQFGF 377
             +C+ ++ + YG AV  GATS+ + SKLVT++GH +LA ++W R++ VDL +  +   F
Sbjct: 328 FWICILLLQMAYGAAVSVGATSSCLWSKLVTVLGHAVLASILWTRAKSVDLKSKAAITSF 387

Query: 378 YMFLWQLNYVEYILIHFLR 396
           YMF+WQL Y EY LI  +R
Sbjct: 388 YMFIWQLFYAEYFLIPLVR 406

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|51949754|gb|AAU14795.1| homogentisate phytylprenyltransferase [Medicago sativa]

 Score =  275 bits (702), Expect = 4e-71,   Method: Compositional matrix adjust.
 Identities = 140/320 (43%), Positives = 207/320 (64%), Gaps = 1/320 (0%)

Query: 78  QQSEDDNKPAAAP-SFLEVVKRKLNAISHVTRYYAQINIIVSVTSVCFLPVQSLSQVTPA 136
           +QS +   PA  P + L+ VK  L+A    +R +  I   +S+ SV  L V+ LS ++P 
Sbjct: 92  EQSFESEHPAFDPKNILDTVKNSLDAFYRFSRPHTVIGTALSIISVSLLAVEKLSDISPL 151

Query: 137 FLLGVLKAVVAQIFMNISLCSLNQICDVEIDKINKPYLPLASGELSMGTGIAICAGSALL 196
           F  GVL+AVVA +FMNI +  LNQ+ DVEIDKINKPYLPLASGE S  TG  I   S++L
Sbjct: 152 FFTGVLEAVVAALFMNIYIVGLNQLSDVEIDKINKPYLPLASGEYSFATGAIIVVSSSIL 211

Query: 197 SLALAFLSGSPAVLCAVIAWGLTGAAYSVPLPFLRWKSHTFMAPFTLVILMGLILQIPYF 256
           S  LA++ GS  +  A+    + G AYS+ +P LRWK    +A   ++ +  +I+Q+ +F
Sbjct: 212 SFWLAWIVGSWPLFWALFISFVLGTAYSINVPLLRWKRFAVLAAMCILSVRAVIVQLAFF 271

Query: 257 IHSQTYLLGKPFEVTGPFVFATAIMSIYAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEK 316
           +H QT++  +P   + P +FATA MS ++ V  L KD+PD+EGDK FG+Q+  V LG+++
Sbjct: 272 LHMQTFVYKRPIVFSRPLIFATAFMSFFSVVIALFKDIPDIEGDKIFGIQSFSVRLGQKR 331

Query: 317 VLPLCVNMMLLGYGGAVVAGATSTLMISKLVTIIGHIILALMMWLRSRKVDLDNFDSQFG 376
           V  +CV ++ L YG ++V GATS+ + SK+VT +GH +LA +++  ++ VDL +  S   
Sbjct: 332 VFWICVTLLELAYGVSLVVGATSSCLWSKIVTSLGHAVLASILFNHAKSVDLKSKASITS 391

Query: 377 FYMFLWQLNYVEYILIHFLR 396
           FYMF+W+L Y EY LI  +R
Sbjct: 392 FYMFIWKLFYAEYFLIPLVR 411

Source: Medicago sativa

Species: Medicago sativa

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|56126261|gb|AAV74623.1| homogentisate geranylgeranyl transferase [Vitis vinifera]

 Score =  274 bits (701), Expect = 4e-71,   Method: Compositional matrix adjust.
 Identities = 136/319 (42%), Positives = 203/319 (63%)

Query: 78  QQSEDDNKPAAAPSFLEVVKRKLNAISHVTRYYAQINIIVSVTSVCFLPVQSLSQVTPAF 137
           Q  E +   ++  S L  VK  L A    +R +  I   +S+ SV  L V+ LS  +P F
Sbjct: 88  QPLESEPGASSPKSTLTPVKNALGAFYRFSRPHTVIGTALSIISVSLLAVEKLSDFSPLF 147

Query: 138 LLGVLKAVVAQIFMNISLCSLNQICDVEIDKINKPYLPLASGELSMGTGIAICAGSALLS 197
             GVL+AVVA + MNI +  LNQI D+EIDK+NKPYLPLASGE S+GTG+ I    A +S
Sbjct: 148 FTGVLEAVVAALLMNIYIVGLNQISDIEIDKVNKPYLPLASGEYSVGTGVGIVTSFAFMS 207

Query: 198 LALAFLSGSPAVLCAVIAWGLTGAAYSVPLPFLRWKSHTFMAPFTLVILMGLILQIPYFI 257
             + ++ GS  +  A+    + G AYS+ LP LRWK    +A   ++ +  +I+QI +++
Sbjct: 208 FLVGWIVGSWPLFWALFVSFVLGTAYSIDLPLLRWKRFALVAAMCILAVRAVIVQIAFYM 267

Query: 258 HSQTYLLGKPFEVTGPFVFATAIMSIYAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKV 317
           H QT++ G+P   + P +FATA MS ++ V  L KD+PD+EGD+ FG+++  V LG+++V
Sbjct: 268 HVQTFVYGRPAVFSRPLIFATAFMSFFSVVIALFKDIPDIEGDRIFGIRSFSVRLGQKRV 327

Query: 318 LPLCVNMMLLGYGGAVVAGATSTLMISKLVTIIGHIILALMMWLRSRKVDLDNFDSQFGF 377
             +C+ ++ + YG AV  GATS+ + SKLVT++GH +LA ++W R++ VDL +  +   F
Sbjct: 328 FWICILLLQMAYGAAVSVGATSSCLWSKLVTVLGHAVLASILWTRAKSVDLKSKAAITSF 387

Query: 378 YMFLWQLNYVEYILIHFLR 396
           YMF+WQL Y EY LI  +R
Sbjct: 388 YMFIWQLFYAEYFLIPLVR 406

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|338810328|sp|B7FA90.1|HPT1_ORYSJ RecName: Full=Probable homogentisate phytyltransferase 1, chloroplastic; AltName: Full=Vitamin E pathway gene 2-1 protein; Short=OsVTE2-1; Flags: Precursor gi|215769309|dbj|BAH01538.1| unnamed protein product [Oryza sativa Japonica Group]

 Score =  274 bits (701), Expect = 5e-71,   Method: Compositional matrix adjust.
 Identities = 152/407 (37%), Positives = 236/407 (57%), Gaps = 17/407 (4%)

Query: 4   MQCLNLAPKFNPLQSPGCSR-------KFASPI--VTQRHKSSIKCSSQSSF--SFPNQN 52
           M  L L P     ++PG +         F  P+  + +  K  +  SSQ +   SF    
Sbjct: 1   MDSLRLRPSLLAARAPGAASLPPLRRDHFLPPLCSIHRNGKRPVSLSSQRTQGPSFDQCQ 60

Query: 53  KI---SHNNNKPPCKPLVPLALQDGHALQQSEDDNKPAAAPSFLEVVKRKLNAISHVTRY 109
           K      ++++ P +P    A   G  LQ S + +  +   S  + +   L+A    +R 
Sbjct: 61  KFFGWKSSHHRIPHRPTSSSADASGQPLQSSAEAHDSS---SIWKPISSSLDAFYRFSRP 117

Query: 110 YAQINIIVSVTSVCFLPVQSLSQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDVEIDKI 169
           +  I   +S+ SV  L V++LS V+P FL G+L+AVVA +FMNI +  LNQ+ D+EIDK+
Sbjct: 118 HTVIGTALSIVSVSLLAVENLSDVSPLFLTGLLEAVVAALFMNIYIVGLNQLFDIEIDKV 177

Query: 170 NKPYLPLASGELSMGTGIAICAGSALLSLALAFLSGSPAVLCAVIAWGLTGAAYSVPLPF 229
           NKP LPLASGE S  TG+A+ +  A +S  L +  GS  +  A+    + G AYS+ LPF
Sbjct: 178 NKPTLPLASGEYSPATGVALVSAFAAMSFGLGWAVGSQPLFLALFISFILGTAYSINLPF 237

Query: 230 LRWKSHTFMAPFTLVILMGLILQIPYFIHSQTYLLGKPFEVTGPFVFATAIMSIYAFVNG 289
           LRWK    +A   ++ +  +I+Q+ +F+H QT++  +P   T P +FATA M+ ++ V  
Sbjct: 238 LRWKRSAVVAALCILAVRAVIVQLAFFLHIQTFVFRRPAVFTRPLIFATAFMTFFSVVIA 297

Query: 290 LLKDLPDVEGDKAFGMQTLCVLLGKEKVLPLCVNMMLLGYGGAVVAGATSTLMISKLVTI 349
           L KD+PD+EGD+ FG+++  V LG++KV  +CV ++ + Y  A++ GATS  + SK  T+
Sbjct: 298 LFKDIPDIEGDRIFGIKSFSVRLGQKKVFWICVGLLEMAYCVAILMGATSACLWSKYATV 357

Query: 350 IGHIILALMMWLRSRKVDLDNFDSQFGFYMFLWQLNYVEYILIHFLR 396
           +GH ILA ++W RSR +DL +  +   FYMF+W+L Y EY+LI  +R
Sbjct: 358 VGHAILAAILWNRSRSIDLTSKTAITSFYMFIWKLFYAEYLLIPLVR 404

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147858275|emb|CAN79669.1| hypothetical protein VITISV_043992 [Vitis vinifera]

 Score =  273 bits (699), Expect = 9e-71,   Method: Compositional matrix adjust.
 Identities = 134/319 (42%), Positives = 204/319 (63%)

Query: 78  QQSEDDNKPAAAPSFLEVVKRKLNAISHVTRYYAQINIIVSVTSVCFLPVQSLSQVTPAF 137
           Q  E +   ++  S    VK  ++A    +R +  I   +S+ SV  L V+ LS  +P F
Sbjct: 88  QPLESEPGASSPKSTWTPVKNAIDAFYRFSRPHTVIGTALSIISVSLLAVEKLSDFSPLF 147

Query: 138 LLGVLKAVVAQIFMNISLCSLNQICDVEIDKINKPYLPLASGELSMGTGIAICAGSALLS 197
             GVL+AVVA + MNI +  LNQI D+EIDK+NKPYLPLASGE S+GTG+ I    A++S
Sbjct: 148 FTGVLEAVVAALLMNIYIVGLNQISDIEIDKVNKPYLPLASGEYSVGTGVGIVTSFAVMS 207

Query: 198 LALAFLSGSPAVLCAVIAWGLTGAAYSVPLPFLRWKSHTFMAPFTLVILMGLILQIPYFI 257
             + ++ GS  +  A+    + G AYS+ LP LRWK    +A   ++ +  +I+QI +++
Sbjct: 208 FLVGWIVGSWPLFWALFVSFVLGTAYSIDLPLLRWKRFALVAAMCILAVRAVIVQIAFYM 267

Query: 258 HSQTYLLGKPFEVTGPFVFATAIMSIYAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKV 317
           H QT++ G+P   + P +FATA MS ++ V  L KD+PD+EGDK FG+++  V LG+++V
Sbjct: 268 HVQTFVYGRPAVFSRPLIFATAFMSFFSVVIALFKDIPDIEGDKIFGIRSFSVRLGQKRV 327

Query: 318 LPLCVNMMLLGYGGAVVAGATSTLMISKLVTIIGHIILALMMWLRSRKVDLDNFDSQFGF 377
             +C+ ++ + YG AV  GATS+ + SKLVT++GH +LA ++W R++ +DL +  +   F
Sbjct: 328 FWICILLLEMAYGAAVSVGATSSCLWSKLVTVLGHAVLASILWTRAKSIDLKSKAAITSF 387

Query: 378 YMFLWQLNYVEYILIHFLR 396
           YMF+WQL Y EY LI  +R
Sbjct: 388 YMFIWQLFYAEYFLIPLVR 406

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|301154114|emb|CBW30209.1| Chlorophyll synthase [Musa balbisiana]

 Score =  273 bits (698), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 155/405 (38%), Positives = 242/405 (59%), Gaps = 19/405 (4%)

Query: 4   MQCLNLAP-KFNPLQSPGCSRKFASPIVTQ---RHKSSIK--CSSQSSFSFPNQNKISHN 57
           M  L L P  F P +S  CSR+    + +Q   R  S+I   CS +     P  +   HN
Sbjct: 1   MDSLLLRPFSFFPCRSSRCSRRGGCYMPSQYLIRKTSNITVGCSVEGHKWGPVNHIFGHN 60

Query: 58  NNKPPCKPLVPL---ALQDGHALQQSEDDNKPAAAPSFLEVVKRKLNAISHVTRYYAQIN 114
           + K     LV      L   +A  +    +KP A  S  +     LNA    +R +  I 
Sbjct: 61  DRK-----LVHTRTNELSHLNATSRHPSGSKPEA--SMWKSALTSLNAFYRFSRPHTVIG 113

Query: 115 IIVSVTSVCFLPVQSLSQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDVEIDKINKPYL 174
            I+S+ SV  L V+SL+ ++P+FL G+L+AV+A +FMNI +  LNQ+ D+EIDK+NKP L
Sbjct: 114 TIMSIISVSLLAVESLTDISPSFLTGLLEAVIAALFMNIYIVGLNQVYDIEIDKVNKPNL 173

Query: 175 PLASGELSMGTGIAICAGSALLSLALAFLSGSPAVLCAVIAWGLTGAAYSVPLPFLRWKS 234
           PLASGE S+ TG+A+   SA +S  +A++ GS  +  A+    + G AYSV LPFLRWK 
Sbjct: 174 PLASGEYSLRTGVAVILTSAAMSFGVAWVVGSLPLFWALFISFILGTAYSVNLPFLRWKR 233

Query: 235 HTFMAPFTLVILMGLILQIPYFIHSQTYLLGKPFEVTGPFVFATAIMSIYAFVNGLLKDL 294
              +A   ++ +  +++Q+ +F+H QT++  +    + P +FATA MS ++ V  L KD+
Sbjct: 234 FAVVAAVCILAVRAVVVQLAFFLHMQTFVFRRSVSFSRPLIFATAFMSFFSVVIALFKDI 293

Query: 295 PDVEGDKAFGMQTLCVLLGKEKVLPLCVNMMLLGYGGAVVAGATSTLMISKLVTIIGHII 354
           PD+EGD+ +G+++  V LG+++V  +CV ++ + Y  A+V GATS+ + SK VT++GH +
Sbjct: 294 PDIEGDRIYGIRSFSVRLGQKRVFWICVYLLEMAYSVAMVIGATSSCLWSKFVTVLGHAV 353

Query: 355 LALMMWLRSRKVDLDNFDSQFGFYMFLWQLN---YVEYILIHFLR 396
           LA ++W R+R +DL +  +   FYMF+W++N   Y EY+LI  +R
Sbjct: 354 LASILWKRARSLDLMSKAAITSFYMFIWKVNCLFYAEYLLIPLVR 398

Source: Musa balbisiana

Species: Musa balbisiana

Genus: Musa

Family: Musaceae

Order: Zingiberales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|171190282|gb|ACB42447.1| homogentisic acid phytyltransferase [Sesamum indicum]

 Score =  272 bits (696), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 136/324 (41%), Positives = 208/324 (64%), Gaps = 7/324 (2%)

Query: 73  DGHALQQSEDDNKPAAAPSFLEVVKRKLNAISHVTRYYAQINIIVSVTSVCFLPVQSLSQ 132
            GH+L     +++PA +P     V+   +A    +R +  I   +S+ SV  L VQ LS 
Sbjct: 88  SGHSL-----ESEPAKSP--WRSVQHAFDAFYRFSRPHTVIGTALSIISVSLLAVQKLSD 140

Query: 133 VTPAFLLGVLKAVVAQIFMNISLCSLNQICDVEIDKINKPYLPLASGELSMGTGIAICAG 192
            +P F  GVL+A+VA + MNI +  LNQ+ D+EIDK+NKPYLPLASGE S+ TG+AI + 
Sbjct: 141 FSPLFFTGVLEAIVAALLMNIYIVGLNQLSDIEIDKVNKPYLPLASGEYSVTTGVAIVSS 200

Query: 193 SALLSLALAFLSGSPAVLCAVIAWGLTGAAYSVPLPFLRWKSHTFMAPFTLVILMGLILQ 252
            A+LS  L ++ GS  +  A+    L G AYSV LP LRWK    +A   ++ +  +I+Q
Sbjct: 201 FAILSFWLGYVVGSWPLFWALSVSFLLGTAYSVNLPLLRWKRFAVIAAMCILSVRAVIVQ 260

Query: 253 IPYFIHSQTYLLGKPFEVTGPFVFATAIMSIYAFVNGLLKDLPDVEGDKAFGMQTLCVLL 312
           I +++H QTY+  +P   T P +FATA MS ++ V  L KD+PD+ GDK +G+Q+  V L
Sbjct: 261 IAFYLHIQTYVFRRPAVFTKPVIFATAFMSFFSVVIALFKDIPDIAGDKIYGIQSFSVRL 320

Query: 313 GKEKVLPLCVNMMLLGYGGAVVAGATSTLMISKLVTIIGHIILALMMWLRSRKVDLDNFD 372
           G+E+V  +C++++ + Y  A++ GAT++ + SK +T+IGH +L L++W R++ +DL +  
Sbjct: 321 GQERVFWICISLLEMAYAVALLVGATTSCIWSKWITVIGHTLLGLLLWDRAKSIDLKSKA 380

Query: 373 SQFGFYMFLWQLNYVEYILIHFLR 396
           S   FYMF+W+L Y EY+LI  +R
Sbjct: 381 SITSFYMFIWKLFYAEYLLIPLVR 404

Source: Sesamum indicum

Species: Sesamum indicum

Genus: Sesamum

Family: Pedaliaceae

Order: Lamiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	396
TAIR|locus:2044440	393	HPT1 "homogentisate phytyltran	0.75	0.755	0.400	2.7e-61
UNIPROTKB|B1B3P3	410	N8DT-1 "Naringenin 8-dimethyla	0.866	0.836	0.337	1.1e-50
UNIPROTKB|B1B5P4	407	SfN8DT-2 "Naringenin 8-dimethy	0.760	0.739	0.358	9.5e-50
TAIR|locus:4010713740	393	HST "homogentisate prenyltrans	0.646	0.651	0.307	5.6e-29
TAIR|locus:2074393	387	G4 [Arabidopsis thaliana (taxi	0.393	0.403	0.273	0.00031

TAIR|locus:2044440 HPT1 "homogentisate phytyltransferase 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 627 (225.8 bits), Expect = 2.7e-61, P = 2.7e-61
 Identities = 119/297 (40%), Positives = 182/297 (61%)

Query:   100 LNAISHVTRYYAQINIIVSVTSVCFLPVQSLSQVTPAFLLGVLKAVVAQIFMNISLCSLN 159
             L+A    +R +  I  ++S+ SV FL V+ +S ++P    G+L+AVVA + MNI +  LN
Sbjct:    97 LDAFYRFSRPHTVIGTVLSILSVSFLAVEKVSDISPLLFTGILEAVVAALMMNIYIVGLN 156

Query:   160 QICDVEIDKINKPYLPLASGELSMGTGIAICXXXXXXXXXXXXXXXXPAVLCAVIAWGLT 219
             Q+ DVEIDK+NKPYLPLASGE S+ TGIAI                   +  A+    + 
Sbjct:   157 QLSDVEIDKVNKPYLPLASGEYSVNTGIAIVASFSIMSFWLGWIVGSWPLFWALFVSFML 216

Query:   220 GAAYSVPLPFLRWKSHTFMAPFTLVILMGLILQIPYFIHSQTYLLGKPFEVTGPFVFATA 279
             G AYS+ LP LRWK    +A   ++ +  +I+QI +++H QT++ G+P   T P +FATA
Sbjct:   217 GTAYSINLPLLRWKRFALVAAMCILAVRAIIVQIAFYLHIQTHVFGRPILFTRPLIFATA 276

Query:   280 IMSIYAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKVLPLCVNMMLLGYXXXXXXXXTS 339
              MS ++ V  L KD+PD+EGDK FG+++  V LG+++V   CV ++ + Y        TS
Sbjct:   277 FMSFFSVVIALFKDIPDIEGDKIFGIRSFSVTLGQKRVFWTCVTLLQMAYAVAILVGATS 336

Query:   340 TLMISKLVTIIGHIILALMMWLRSRKVDLDNFDSQFGFYMFLWQLNYVEYILIHFLR 396
               + SK+++++GH+ILA  +W R++ VDL +       YMF+W+L Y EY+L+ FL+
Sbjct:   337 PFIWSKVISVVGHVILATTLWARAKSVDLSSKTEITSCYMFIWKLFYAEYLLLPFLK 393

GO:0004659 "prenyltransferase activity" evidence=IEA;IDA

GO:0005886 "plasma membrane" evidence=ISM

GO:0010189 "vitamin E biosynthetic process" evidence=IMP;TAS

GO:0016021 "integral to membrane" evidence=IEA

GO:0009507 "chloroplast" evidence=ISS

GO:0010176 "homogentisate phytyltransferase activity" evidence=IMP;IDA

GO:0042362 "fat-soluble vitamin biosynthetic process" evidence=TAS

GO:0009266 "response to temperature stimulus" evidence=IMP

GO:0009915 "phloem sucrose loading" evidence=IMP

GO:0031347 "regulation of defense response" evidence=IMP

GO:0006636 "unsaturated fatty acid biosynthetic process" evidence=RCA;IMP

GO:0071555 "cell wall organization" evidence=IMP

GO:0000096 "sulfur amino acid metabolic process" evidence=RCA

GO:0006546 "glycine catabolic process" evidence=RCA

GO:0006733 "oxidoreduction coenzyme metabolic process" evidence=RCA

GO:0006766 "vitamin metabolic process" evidence=RCA

GO:0008652 "cellular amino acid biosynthetic process" evidence=RCA

GO:0009072 "aromatic amino acid family metabolic process" evidence=RCA

GO:0009106 "lipoate metabolic process" evidence=RCA

GO:0009108 "coenzyme biosynthetic process" evidence=RCA

GO:0009117 "nucleotide metabolic process" evidence=RCA

GO:0009416 "response to light stimulus" evidence=RCA

GO:0009695 "jasmonic acid biosynthetic process" evidence=RCA

GO:0009965 "leaf morphogenesis" evidence=RCA

GO:0015994 "chlorophyll metabolic process" evidence=RCA

GO:0019216 "regulation of lipid metabolic process" evidence=RCA

GO:0019288 "isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway" evidence=RCA

GO:0019748 "secondary metabolic process" evidence=RCA

GO:0030154 "cell differentiation" evidence=RCA

GO:0031408 "oxylipin biosynthetic process" evidence=RCA

GO:0044272 "sulfur compound biosynthetic process" evidence=RCA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

UNIPROTKB|B1B3P3 N8DT-1 "Naringenin 8-dimethylallyltransferase 1, chloroplastic" [Sophora flavescens (taxid:49840)]

 Score = 527 (190.6 bits), Expect = 1.1e-50, P = 1.1e-50
 Identities = 117/347 (33%), Positives = 184/347 (53%)

Query:    50 NQNKISHNNNKPPCKPLVPLALQDGHALQQSEDDNKPAAAPSFLEVVKRKLNAISHVTRY 109
             N+   + N +K   K  V  A+ +    Q  E + +     S  + V   L+      R 
Sbjct:    68 NEGGSTSNTSKECEKKYVVNAISE----QSFEYEPQTRDPESIWDSVNDALDIFYKFCRP 123

Query:   110 YAQINIIVSVTSVCFLPVQSLSQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDVEIDKI 169
             YA   I++  T    + V+ LS ++ AF +G L+ VVA I ++I    LNQ+CD+EIDKI
Sbjct:   124 YAMFTIVLGATFKSLVAVEKLSDLSLAFFIGWLQVVVAVICIHIFGVGLNQLCDIEIDKI 183

Query:   170 NKPYLPLASGELSMGTGIAICXXXXXXXXXXXXXXXXPAVLCAVIAWGLTGAAYSVPLPF 229
             NKP LPLASG+LS    + I                   +   V    +  +AY+V LP 
Sbjct:   184 NKPDLPLASGKLSFRNVVIITASSLILGLGFAWIVDSWPLFWTVFISCMVASAYNVDLPL 243

Query:   230 LRWKSHTFMAPFTLVILMGLILQIPYFIHSQTYLLGKPFEVTGPFVFATAIMSIYAFVNG 289
             LRWK +  +     +  + +   + +F+H QT +  +P     P +F TAI+SIYA V  
Sbjct:   244 LRWKKYPVLTAINFIADVAVTRSLGFFLHMQTCVFKRPTTFPRPLIFCTAIVSIYAIVIA 303

Query:   290 LLKDLPDVEGDKAFGMQTLCVLLGKEKVLPLCVNMMLLGYXXXXXXXXTSTLMISKLVTI 349
             L KD+PD+EGD+ FG+Q+L + LG ++V  +CV+++ + Y        TS ++ SK++T+
Sbjct:   304 LFKDIPDMEGDEKFGIQSLSLRLGPKRVFWICVSLLEMTYGVTILVGATSPILWSKIITV 363

Query:   350 IGHIILALMMWLRSRKVDLDNFDSQFGFYMFLWQLNYVEYILIHFLR 396
             +GH +LA ++W  ++ VDL +      FYMF+W+L+  EY LI   R
Sbjct:   364 LGHAVLASVLWYHAKSVDLTSNVVLHSFYMFIWKLHTAEYFLIPLFR 410

GO:0004659 "prenyltransferase activity" evidence=IDA

GO:0009507 "chloroplast" evidence=IDA

UNIPROTKB|B1B5P4 SfN8DT-2 "Naringenin 8-dimethylallyltransferase" [Sophora flavescens (taxid:49840)]

 Score = 518 (187.4 bits), Expect = 9.5e-50, P = 9.5e-50
 Identities = 108/301 (35%), Positives = 167/301 (55%)

Query:    96 VKRKLNAISHVTRYYAQINIIVSVTSVCFLPVQSLSQVTPAFLLGVLKAVVAQIFMNISL 155
             V   L+      R YA  ++++  T    + V+ LS ++ AF +G L+ VVA I ++I  
Sbjct:   107 VNDALDTFYKFCRPYAIFSVVLGATFKSLVAVERLSDLSLAFFIGWLQVVVAVICIHIFD 166

Query:   156 CSLNQICDVEIDKINKPYLPLASGELSMGTGIAICXXXXXXXXXXXXXXXXPAVLCAVIA 215
               LNQ+CD+EIDKINKP LPLASG LS    + I                   +   V  
Sbjct:   167 VGLNQLCDIEIDKINKPDLPLASGNLSFRNVVIITASSLILGLGFAWIVGSWPLFWTVFI 226

Query:   216 WGLTGAAYSVPLPFLRWKSHTFMAPFTLVILMGLILQIPYFIHSQTYLLGKPFEVTGPFV 275
               +  AAY+V LP LRWK +  +   + +  + +   + +F+H QT +  +P     P +
Sbjct:   227 CCMFAAAYNVDLPLLRWKKYPVLTAISFIANVAVTRSLGFFLHMQTCVFKRPTTFPRPLI 286

Query:   276 FATAIMSIYAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKVLPLCVNMMLLGYXXXXXX 335
             F TAI+SIYA V  L KD+PD+EGD+ FG+Q+L + LG ++V  +CV+++ + Y      
Sbjct:   287 FCTAIVSIYAIVIALFKDIPDMEGDEKFGIQSLSLRLGPKRVFWICVSLLEMAYGVTILV 346

Query:   336 XXTSTLMISKLVTIIGHIILALMMWLRSRKVDLDNFDSQFGFYMFLWQLNYVEYILIHFL 395
               TS ++ SK++T++GH ILA ++W  ++  DL +      FYMF+W+L+  EY LI   
Sbjct:   347 GATSPILWSKIITVLGHAILASVLWYHAKSTDLTSNVVLQSFYMFIWKLHTAEYCLIPLF 406

Query:   396 R 396
             R
Sbjct:   407 R 407

GO:0004659 "prenyltransferase activity" evidence=IDA

GO:0009507 "chloroplast" evidence=IDA

TAIR|locus:4010713740 HST "homogentisate prenyltransferase" [Arabidopsis thaliana (taxid:3702)]

 Score = 322 (118.4 bits), Expect = 5.6e-29, P = 5.6e-29
 Identities = 81/263 (30%), Positives = 131/263 (49%)

Query:   136 AFLLGVLKAVVAQIFMNISLCSLNQICDVEIDKINKPYLPLASGELSMGTGIAICXXXXX 195
             + +L  L  ++A I  N  +  +NQI D+ IDK+NKPYLP+A+G+LS+ +   +      
Sbjct:   135 SLVLKALSGLLALICGNGYIVGINQIYDIGIDKVNKPYLPIAAGDLSVQSAWLLVIFFAI 194

Query:   196 XXXXXXXXXXXPAVLCAVIAWGL-TGAAYSVPLPFLRWKSHTFMAPFTLVILMGLILQIP 254
                        P +  ++ + GL  G  YSVP P LR K     A   +  + G +L   
Sbjct:   195 AGLLVVGFNFGPFIT-SLYSLGLFLGTIYSVP-P-LRMKRFPVAAFLIIATVRGFLLNFG 251

Query:   255 YFIHSQTYLLGKPFEVTGPFVFATAIMSIYAFVNGLLKDLPDVEGDKAFGMQTLCVLLGK 314
              + H+    LG PF+ + P  F T+ ++++A V  + KDLPDVEGD+ F + TL   LG 
Sbjct:   252 VY-HATRAALGLPFQWSAPVAFITSFVTLFALVIAITKDLPDVEGDRKFQISTLATKLGV 310

Query:   315 EKVLPLCVNMMLLGYXXXXXXXXTSTLMISKLVTIIGHIILALMMWLRSRKVDLDNFDSQ 374
               +  L   ++L+ Y            +    + I  H+ILA  +  ++  ++  N+  +
Sbjct:   311 RNIAFLGSGLLLVNYVSAISLAFYMPQVFRGSLMIPAHVILASGLIFQTWVLEKANYTKE 370

Query:   375 F--GFYMFLWQLNYVEYILIHFL 395
                G+Y F+W L Y EY+L  FL
Sbjct:   371 AISGYYRFIWNLFYAEYLLFPFL 393

GO:0004161 "dimethylallyltranstransferase activity" evidence=NAS

GO:0004659 "prenyltransferase activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM

GO:0016021 "integral to membrane" evidence=IEA

GO:0010236 "plastoquinone biosynthetic process" evidence=IMP

GO:0010355 "homogentisate farnesyltransferase activity" evidence=IDA

GO:0010356 "homogentisate geranylgeranyltransferase activity" evidence=IDA

GO:0010357 "homogentisate solanesyltransferase activity" evidence=IDA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0009536 "plastid" evidence=IDA

GO:0016117 "carotenoid biosynthetic process" evidence=IMP

TAIR|locus:2074393 G4 [Arabidopsis thaliana (taxid:3702)]

 Score = 118 (46.6 bits), Expect = 0.00031, P = 0.00031
 Identities = 47/172 (27%), Positives = 73/172 (42%)

Query:   157 SLNQICDVEIDKINKPYLPLASGELS---MGTGIAICXXXXXXXXXXX---XXXXXPAVL 210
             ++N   D +ID IN+PY P+ SG +S   + T + +                    P V 
Sbjct:   153 TINDWYDRDIDAINEPYRPIPSGAISEPEVITQVWVLLLGGLGIAGILDVWAGHTTPTVF 212

Query:   211 CAVIAWGLTGAAYSVPLPFLRWKSHTFMAPFTLVILMGLILQIPYFIHSQTYLLGKPFEV 270
                +   L    YS P P L+ K + ++  F L       + +P++   Q  L G    +
Sbjct:   213 YLALGGSLLSYIYSAP-P-LKLKQNGWVGNFALG---ASYISLPWWA-GQA-LFGT---L 262

Query:   271 TGPFVFATAIMSIYAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKVLPLCV 322
             T   V  T + SI      ++ D   VEGD+A G+Q+L V  G E    +CV
Sbjct:   263 TPDVVVLTLLYSIAGLGIAIVNDFKSVEGDRALGLQSLPVAFGTETAKWICV 314


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.327   0.140   0.433    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      396       360   0.00082  117 3  11 22  0.44    33
                                                     34  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  5
  No. of states in DFA:  610 (65 KB)
  Total size of DFA:  237 KB (2129 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  28.55u 0.11s 28.66t   Elapsed:  00:00:01
  Total cpu time:  28.55u 0.11s 28.66t   Elapsed:  00:00:01
  Start:  Fri May 10 06:22:27 2013   End:  Fri May 10 06:22:28 2013

GO:0004659 "prenyltransferase activity" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0015995 "chlorophyll biosynthetic process" evidence=RCA;TAS

GO:0046408 "chlorophyll synthetase activity" evidence=IDA

GO:0009534 "chloroplast thylakoid" evidence=IDA

GO:0006098 "pentose-phosphate shunt" evidence=RCA

GO:0006364 "rRNA processing" evidence=RCA

GO:0009073 "aromatic amino acid family biosynthetic process" evidence=RCA

GO:0009902 "chloroplast relocation" evidence=RCA

GO:0009965 "leaf morphogenesis" evidence=RCA

GO:0010027 "thylakoid membrane organization" evidence=RCA

GO:0016117 "carotenoid biosynthetic process" evidence=RCA

GO:0019288 "isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway" evidence=RCA

GO:0019344 "cysteine biosynthetic process" evidence=RCA

GO:0030154 "cell differentiation" evidence=RCA

GO:0034660 "ncRNA metabolic process" evidence=RCA

GO:0042793 "transcription from plastid promoter" evidence=RCA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

GO:0009535 "chloroplast thylakoid membrane" evidence=TAS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
B7FA90	HPT1_ORYSJ	2, ., 5, ., 1, ., n, 8	0.3734	0.9848	0.9653	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.5.1	LOW CONFIDENCE prediction!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	gw1.XVIII.1796.1	homogentisate phytyltransferase (284 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	fgenesh4_pm.C_LG_II000277	4-hydroxyphenylpyruvate dioxygenase (EC-1.13.11.27) (444 aa)						•	•		0.901
	grail3.0003038902	MPBQ/MSBQ methyltransferase (341 aa)						•			0.899
	eugene3.00051228	SubName- Full=Putative uncharacterized protein; (340 aa)						•			0.899
	eugene3.00051120	4-hydroxyphenylpyruvate dioxygenase (343 aa)						•			0.899
	estExt_fgenesh4_pm.C_LG_VIII0681	MPBQ/MSBQ methyltransferase (341 aa)						•			0.899
	eugene3.00120625	SubName- Full=Putative uncharacterized protein; (470 aa)			•			•			0.840
	fgenesh4_pg.C_scaffold_129000030	geranylgeranyl reductase (CHL P) (210 aa)			•			•			0.836
	grail3.0001010701	geranylgeranyl reductase (CHL P) (EC-1.3.1.-) (454 aa)			•			•			0.832
	gw1.66.323.1	geranylgeranyl reductase (CHL P) (EC-1.3.1.-) (413 aa)			•			•			0.829
	eugene3.00012780	annotation not avaliable (326 aa)						•			0.800

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	396
PLN02878	280	PLN02878, PLN02878, homogentisate phytyltransferas	1e-107
PRK12887	308	PRK12887, ubiA, tocopherol phytyltransferase; Revi	9e-57
pfam01040	259	pfam01040, UbiA, UbiA prenyltransferase family	3e-24
COG0382	289	COG0382, UbiA, 4-hydroxybenzoate polyprenyltransfe	1e-22
PRK12872	285	PRK12872, ubiA, prenyltransferase; Reviewed	2e-14
PRK12884	279	PRK12884, ubiA, prenyltransferase; Reviewed	2e-13
PRK07566	314	PRK07566, PRK07566, bacteriochlorophyll/chlorophyl	2e-11
TIGR01476	283	TIGR01476, chlor_syn_BchG, bacteriochlorophyll/chl	4e-11
PRK09573	279	PRK09573, PRK09573, (S)-2,3-di-O-geranylgeranylgly	3e-09
TIGR02056	306	TIGR02056, ChlG, chlorophyll synthase, ChlG	1e-08
PRK12883	277	PRK12883, ubiA, prenyltransferase UbiA-like protei	5e-08
PLN00012	375	PLN00012, PLN00012, chlorophyll synthetase; Provis	2e-06
PRK12324	295	PRK12324, PRK12324, phosphoribose diphosphate:deca	4e-05
PRK12882	276	PRK12882, ubiA, prenyltransferase; Reviewed	1e-04
PRK12875	282	PRK12875, ubiA, prenyltransferase; Reviewed	2e-04
PRK08238	479	PRK08238, PRK08238, hypothetical protein; Validate	5e-04

>gnl|CDD|178466 PLN02878, PLN02878, homogentisate phytyltransferase

 Score =  316 bits (811), Expect = e-107
 Identities = 122/280 (43%), Positives = 189/280 (67%)

Query: 117 VSVTSVCFLPVQSLSQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDVEIDKINKPYLPL 176
           + +TSV  L V+SLS  +P F  G+L+A+V  + MNI +  LNQ+ D+EIDK+NKPYLPL
Sbjct: 1   LGITSVSLLAVESLSDFSPLFFTGLLEALVPALLMNIYIVGLNQLYDIEIDKVNKPYLPL 60

Query: 177 ASGELSMGTGIAICAGSALLSLALAFLSGSPAVLCAVIAWGLTGAAYSVPLPFLRWKSHT 236
           ASGE S+ TG+AI    A++S  + ++ GS  +  A+    + G AYS+ LP LRWK   
Sbjct: 61  ASGEFSVATGVAIVTSFAIMSFGMGWIVGSWPLFWALFVSFVLGTAYSINLPLLRWKRSA 120

Query: 237 FMAPFTLVILMGLILQIPYFIHSQTYLLGKPFEVTGPFVFATAIMSIYAFVNGLLKDLPD 296
             A   ++ +  +++Q+ +F+H QT++LG+P   T P +FATA M  ++ V  L KD+PD
Sbjct: 121 VAAASCILAVRAVVVQLAFFLHMQTHVLGRPAVFTRPLIFATAFMCFFSVVIALFKDIPD 180

Query: 297 VEGDKAFGMQTLCVLLGKEKVLPLCVNMMLLGYGGAVVAGATSTLMISKLVTIIGHIILA 356
           VEGD+ FG+++  V LG+++V  LCVN++ + Y  A++ GA+S+ + SK++T++GH ILA
Sbjct: 181 VEGDRIFGIRSFSVRLGQKRVFWLCVNLLEMAYAAAILVGASSSFLWSKIITVLGHGILA 240

Query: 357 LMMWLRSRKVDLDNFDSQFGFYMFLWQLNYVEYILIHFLR 396
            ++W R++ VDL +  +   FYMF+W+L Y EY LI  +R
Sbjct: 241 SILWQRAQSVDLSSKAAITSFYMFIWKLFYAEYFLIPLVR 280

Length = 280

>gnl|CDD|183813 PRK12887, ubiA, tocopherol phytyltransferase; Reviewed

 Score =  187 bits (478), Expect = 9e-57
 Identities = 91/263 (34%), Positives = 146/263 (55%), Gaps = 4/263 (1%)

Query: 129 SLSQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDVEIDKINKPYLPLASGELSMGTGIA 188
           S + +  A L  +L A +A +  N+ +  LNQ+ D+EID+INKP+LPLA+GE S   G  
Sbjct: 43  SSNTIALANLGLLLGAWIACLCGNVYIVGLNQLTDIEIDRINKPHLPLAAGEFSRRQGQR 102

Query: 189 ICAGSALLSLALAFLSGSPAVLCAVIAWGLTGAAYSVPLPFLRWKSHTFMAPFTLVILMG 248
           I   + +L+L LA L G P +L  V    L G AYS  LP +R K    +A   +  + G
Sbjct: 103 IVIITGILALILAALLG-PWLLITVGISLLIGTAYS--LPPIRLKRFPLLAALCIFTVRG 159

Query: 249 LILQIPYFIHSQTYLLGKPFEVTGPFVFATAIMSIYAFVNGLLKDLPDVEGDKAFGMQTL 308
           +I+ +  F+H Q +LLG    +       T  + ++ F   + KD+PD+EGD+ + + T 
Sbjct: 160 VIVNLGLFLHFQ-WLLGGSVLIPPTVWLLTLFVLVFTFAIAIFKDIPDMEGDRQYQITTF 218

Query: 309 CVLLGKEKVLPLCVNMMLLGYGGAVVAGATSTLMISKLVTIIGHIILALMMWLRSRKVDL 368
            + LGK+ V  L   ++   Y G +  G  S   ++    I+ H+IL  ++W RS++VDL
Sbjct: 219 TLRLGKQAVFKLSCWVLTACYLGMIAVGLLSLPTVNPAFLIVSHLILLALLWWRSQRVDL 278

Query: 369 DNFDSQFGFYMFLWQLNYVEYIL 391
            +  +   FY F+W+L ++EY+L
Sbjct: 279 QDKQAIAQFYQFIWKLFFLEYLL 301

Length = 308

>gnl|CDD|216260 pfam01040, UbiA, UbiA prenyltransferase family

 Score =  100 bits (250), Expect = 3e-24
 Identities = 66/261 (25%), Positives = 116/261 (44%), Gaps = 18/261 (6%)

Query: 129 SLSQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDVEIDKI--NKPYLPLASGELSMGTG 186
           +L+      LL +L  ++A + +  +   LN   D EID    NKP  PL SG +S    
Sbjct: 13  ALAAGGVLDLLLLLLLLLALLLLQAAGNVLNDYFDYEIDADNPNKPDRPLPSGRISPREA 72

Query: 187 IAICAGSALLSLALAFLSGSPAVLCAVIAWGLTGAAYSVPLPFLRWKSHTFMAPFTLVIL 246
           + +     LL L LA L G   +L  ++   L G  YS   P LR K    +    + + 
Sbjct: 73  LLLGLALLLLGLLLALLLGPLLLLLGLLGLLL-GLLYS---PPLRLKRRPLLGELVVGLA 128

Query: 247 MGLILQIPYFIHSQTYLLGKPFEVTGPFVFATAIMSIYAFVNGLLKDLPDVEGDKAFGMQ 306
            GL++ +  +                 F+ + AI+        L  D+ DVEGD+  G++
Sbjct: 129 FGLLILLGAYAVGGDIPSPLLLLALPVFLLSLAIL--------LTNDIRDVEGDRKAGIR 180

Query: 307 TLCVLLGKEKVLPLCVNMMLLGYGGAVVAGATSTLMISKLVTIIGHIILALMMWLRSRKV 366
           TL V LG+++ L L      L    A++      L+++ L+ ++  ++LAL + + +R +
Sbjct: 181 TLPVRLGRKRALAL----YALLLAAALLLLLLLLLLLAPLLLLLAVLLLALALLVAARLL 236

Query: 367 DLDNFDSQFGFYMFLWQLNYV 387
              N +     ++F+  L  +
Sbjct: 237 RRRNPEEPARTFLFIALLFGL 257

Length = 259

>gnl|CDD|223459 COG0382, UbiA, 4-hydroxybenzoate polyprenyltransferase and related prenyltransferases [Coenzyme metabolism]

 Score = 96.6 bits (241), Expect = 1e-22
 Identities = 60/259 (23%), Positives = 105/259 (40%), Gaps = 24/259 (9%)

Query: 138 LLGVLKAVVAQIFMNISLCSLNQICDVEIDKINKP--YLPLASGELSMGTGIAICAGSAL 195
           L  +L A +A      +   +N + D EID+IN      PL SG +S+   + +     L
Sbjct: 46  LKLLLLAFLAFFLARSAGYVINDLADREIDRINPRTKNRPLPSGRVSVKEALLLAILLLL 105

Query: 196 LSLALAFLSGSPAVLCAVIAWGLTGAAYSVPLPFLRWKSHTFMAPFTLVILMGLILQIPY 255
           L LALA L    A L   +A  +   AY         K  TF+    L +  GL      
Sbjct: 106 LGLALALLLNPLAFL-LSLAALVLALAY------PFLKRFTFLPQLVLGLAFGLGALAGA 158

Query: 256 FIHSQTYLLGKPFEVTGPFVFATAIMSIYAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKE 315
                +  L          +   AI+    +   ++  + D+EGD+  G+++L VL G +
Sbjct: 159 AAVGGSLPL------LAWLLLLAAILWTLGYD--IIYAIQDIEGDRKAGLKSLPVLFGIK 210

Query: 316 KVLPLCVNMMLLGYGGAVVAGATSTLM--ISKLVTIIGHIILALMMWLRSRKVDLDNFDS 373
           K L      + L    A        L+  +  L+ ++G ++ AL++  +   VD+ +  +
Sbjct: 211 KAL-----ALALLLLLASALLVLLGLLAGLLGLIYLLGLLVAALLLLYQILIVDVRDPPA 265

Query: 374 QFGFYMFLWQLNYVEYILI 392
            F  +     L  + +I +
Sbjct: 266 CFALFDVNLLLGLLLFIGL 284

Length = 289

>gnl|CDD|237241 PRK12872, ubiA, prenyltransferase; Reviewed

 Score = 73.1 bits (180), Expect = 2e-14
 Identities = 59/272 (21%), Positives = 103/272 (37%), Gaps = 15/272 (5%)

Query: 114 NIIVSVTSVCFLPVQSLSQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDVEIDKINKPY 173
           N++++      + + SL    P   L +L   +    + I    +N + D+E D INKP 
Sbjct: 15  NLLIAALGQSLVYMASLLLGLPISWLLLLITFLIAAAVYI----INYLTDLEEDIINKPE 70

Query: 174 LPLASGELSMGTGIAICAGSALLSLALAFLSGSPAVLCAVIAWGLTGAAYSVPLPFLRWK 233
             + S   + G  + +      L   L  + G P      I   + G  YSV     R K
Sbjct: 71  RVVFSETKAYGLFLLLNVLGLYLGAYLLAVIGGPKFALIFIIPLILGILYSVFF-KRRLK 129

Query: 234 SHTFMAPFTLVILMGLILQIPYFIHSQTYLLGKPFEVTGPFVFATAIMSIYAFVNGLLKD 293
                    + +L  L   I    + Q  +           VF         F+  ++ D
Sbjct: 130 RIPLFKNLVVSLLWALSPLILGVYYYQLTIFSLLLLY---AVFIFLKS----FIREIVFD 182

Query: 294 LPDVEGDKAFGMQTLCVLLGKEKVLPLCVNMMLLGYGGAVVAGATSTLMISKLVTIIGHI 353
           + D+EGD+  G++TL ++LGKE+ L   + + LL     ++   T  L +  LV ++   
Sbjct: 183 IKDIEGDRKSGLKTLPIVLGKERTLKFLLILNLLFLILLILGVYTGLLPLLLLVLLLLLA 242

Query: 354 ILALMM---WLRSRKVDLDNFDSQFGFYMFLW 382
            +   +   +    K DL         +M L 
Sbjct: 243 YVLYYIIKLFAADDKKDLLYLSLLDKEHMLLG 274

Length = 285

>gnl|CDD|183812 PRK12884, ubiA, prenyltransferase; Reviewed

 Score = 69.6 bits (171), Expect = 2e-13
 Identities = 58/236 (24%), Positives = 100/236 (42%), Gaps = 29/236 (12%)

Query: 97  KRKLNAISHVTRYYAQINIIVSVTSVCFLPVQSLSQVTPAFLLGVLKAVVAQIFMNISLC 156
           + K+ A   + R    +   ++V     + +  L  +  A LLG L A  A    N    
Sbjct: 1   RTKMKAYLELLRPEHGLMAGIAVVLGAIIALGGLP-LDEA-LLGFLTAFFASGSANA--- 55

Query: 157 SLNQICDVEIDKINKPYLPLASGELSMGTGIAICAGSALLSLALAFLSGSPAVLCAVIAW 216
            LN   D E+D+IN+P  P+ SG +S    + +     +L L  A+L    A L  ++  
Sbjct: 56  -LNDYFDYEVDRINRPDRPIPSGRISRREALLLAILLFILGLIAAYLISPLAFLVVILVS 114

Query: 217 GLTGAAYSVPLPFLRWKSHTFMAPFTLVILMGLILQIPYFIHSQTYLLGKPFEVTGPFVF 276
            L G  Y+      + K +  +    +  L G+      FI      +G+  E       
Sbjct: 115 VL-GILYN-----WKLKEYGLIGNLYVAFLTGMT-----FIFG-GIAVGELNE------- 155

Query: 277 ATAIMSIYAFVNGL----LKDLPDVEGDKAFGMQTLCVLLGKEKVLPLCVNMMLLG 328
           A  +++  AF+  L    +KD+ DVEGD+  G +TL +L G++    +   + +L 
Sbjct: 156 AVILLAAMAFLMTLGREIMKDIEDVEGDRLRGARTLAILYGEKIAGRIAAALFILA 211

Length = 279

>gnl|CDD|236052 PRK07566, PRK07566, bacteriochlorophyll/chlorophyll a synthase; Reviewed

 Score = 63.8 bits (156), Expect = 2e-11
 Identities = 55/215 (25%), Positives = 95/215 (44%), Gaps = 25/215 (11%)

Query: 158 LNQICDVEIDKINKPYLPLASGELSMGTGIAICAGSALLSLALAFLSGSPAVLCAVIAWG 217
           LN   D E+D IN+PY P+ SG +S+   + + A   +L LA+A+L G P V  A +   
Sbjct: 84  LNDYFDREVDAINEPYRPIPSGAISLRWVLYLIAVLTVLGLAVAYLLG-PWVFLAALLGL 142

Query: 218 LTGAAYSVPLPFLRWKSHTFMAPFTLVILMGL-ILQIPYFIHSQTYLLGKPFEVTGPFVF 276
                YS P P LR K + ++        +GL    +P++  +  +  G P   + P V 
Sbjct: 143 FLAWIYSAP-P-LRLKQNGWLGN----YAVGLSYEGLPWWAGAAAFGAGLP---SWPIVI 193

Query: 277 ATAIMSIYAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKVLPLCVNMMLLGYGGAVVAG 336
              + S+ A     L D   VEGD+  G+++L V+ G++    +   ++ L     +   
Sbjct: 194 LALLYSLGAHGIMTLNDFKSVEGDRQLGLRSLPVVFGEKNAARIACVVIDLFQLAVI--- 250

Query: 337 ATSTLMISKLVTIIGHIILALM--------MWLRS 363
               L+++    +   I+  L+          LR 
Sbjct: 251 ---ALLLAWGQPLYAAIVGLLLIPQITLQDRLLRD 282

Length = 314

>gnl|CDD|130541 TIGR01476, chlor_syn_BchG, bacteriochlorophyll/chlorophyll synthetase

 Score = 62.9 bits (153), Expect = 4e-11
 Identities = 40/205 (19%), Positives = 86/205 (41%), Gaps = 21/205 (10%)

Query: 157 SLNQICDVEIDKINKPYLPLASGELSMGTGIAICAGSALLSLALAFLSGSPAVLCAVIAW 216
           S+N   D ++D IN+P  P+ SG +S+           +  L +A + G+  ++   +  
Sbjct: 56  SINDYFDRDVDAINEPQRPIPSGIISLREVRWNWLVLTVAGLLVALVLGNWLIVLFTVVG 115

Query: 217 GLTGAAYSVPLPFLRWKSHTFMAPFTLVILMGLILQIPYFIHSQTYLLGKPFEVTGPFVF 276
            +    YS+P P ++ K + ++ P  + +       +P+      +       V    ++
Sbjct: 116 IVLAVIYSMP-P-IKLKRNGWLGPPAVGLSY---EGLPWMAGHAIFAPLTWQSVVVALIY 170

Query: 277 ATAIMSIYAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKVLPLCVNMMLLGYGGAVVAG 336
           +     I   +N    D   VEGD+  G+++L V++G ++   + V  +           
Sbjct: 171 SLGAHGI-MTLN----DFKSVEGDRQLGLRSLPVMIGVKRAAIVAVTTI----------- 214

Query: 337 ATSTLMISKLVTIIGHIILALMMWL 361
                M+  L+ I G   +A +++L
Sbjct: 215 NVFQAMVIGLLLIWGQPWVATIVFL 239

This model describes a subfamily of a large family of polyprenyltransferases (pfam01040) that also includes 4-hydroxybenzoate octaprenyltransferase and protoheme IX farnesyltransferase (heme O synthase). Members of this family are found exclusively in photosynthetic organisms, including a single copy in Arabidopsis thaliana [Biosynthesis of cofactors, prosthetic groups, and carriers, Chlorophyll and bacteriochlorphyll]. Length = 283

>gnl|CDD|181963 PRK09573, PRK09573, (S)-2,3-di-O-geranylgeranylglyceryl phosphate synthase; Reviewed

 Score = 57.3 bits (139), Expect = 3e-09
 Identities = 42/167 (25%), Positives = 65/167 (38%), Gaps = 28/167 (16%)

Query: 158 LNQICDVEIDKINKPYLPLASGELSMGTGIAICAGSALLSLALAFLSGSPAVLCAVIAWG 217
           +N I D+EIDKINKP  P+ SG +S+           ++ L L+      A L A++   
Sbjct: 56  INDIYDIEIDKINKPERPIPSGRISLKEAKIFSITLFIVGLILSIFINIYAFLIALLN-- 113

Query: 218 LTGAAYSVPLPF--LRWKSHTFMAPFTLVILMGLILQIPYFIHSQTYLLGKPFEVTGPFV 275
                 S+ L       K    +    +  L GL      FI       G         +
Sbjct: 114 ------SILLYLYAKDLKKTGLIGNLIVAYLTGLS-----FIFG-----GLAVFNVLRII 157

Query: 276 FATAIMSIYAFVNGL----LKDLPDVEGDKAFGMQTLCVLLGKEKVL 318
               I+ + AF +      +KD+ D+EGD    + TL +  G +K  
Sbjct: 158 ----ILFLCAFFSTWSREIVKDIEDIEGDLKENVITLPIKYGIKKSW 200

Length = 279

>gnl|CDD|131111 TIGR02056, ChlG, chlorophyll synthase, ChlG

 Score = 55.4 bits (133), Expect = 1e-08
 Identities = 53/213 (24%), Positives = 92/213 (43%), Gaps = 15/213 (7%)

Query: 157 SLNQICDVEIDKINKPYLPLASGELSMGTGIAICAGSALLSLALAFL----SGSPAVLCA 212
           ++N   D +ID IN+PY P+ SG +S    I       +  +A+AF+    +G       
Sbjct: 72  TINDFYDRDIDAINEPYRPIPSGAISEPEVITQIVLLFIAGIAIAFILDLWAGHEFPNVF 131

Query: 213 VIAWGLTGAAYSVPLPFLRWKSHTFMAPFTLVILMGLILQIPYFIHSQTYLLGKPFEVTG 272
           V+A   +  A+    P L+ K + ++  F L       + +P++  +   L G   E+  
Sbjct: 132 VLALFGSFIAFIYSAPPLKLKQNGWLGNFAL---GASYIALPWW--AGHALFG---ELNP 183

Query: 273 PFVFATAIMSIYAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKVLPLCVNMMLLGYG-- 330
                T I SI      ++ D   VEGD+A G+Q+L V  G E    +CV  + +  G  
Sbjct: 184 DIAVLTLIYSIAGLGIAIVNDFKSVEGDRALGLQSLPVAFGIETAAWICVGAIDIFQGLI 243

Query: 331 -GAVVAGATSTLMISKLVTIIGHIILALMMWLR 362
              ++A   +    + +  II  I      +L+
Sbjct: 244 AAYLLAIGENLYAAALVALIIPQITFQDKYFLK 276

This model represents the strictly cyanobacterial and plant-specific chlorophyll synthase ChlG. ChlG is the enzyme (esterase) which attaches the side chain moiety onto chlorophyllide a. Both geranylgeranyl and phytyl pyrophosphates are substrates to varying degrees in enzymes from different sources. Thus, ChlG may act as the final or penultimate step in chlorophyll biosynthesis (along with the geranylgeranyl reductase, ChlP) [Biosynthesis of cofactors, prosthetic groups, and carriers, Chlorophyll and bacteriochlorphyll]. Length = 306

>gnl|CDD|171796 PRK12883, ubiA, prenyltransferase UbiA-like protein; Reviewed

 Score = 53.2 bits (128), Expect = 5e-08
 Identities = 62/206 (30%), Positives = 91/206 (44%), Gaps = 50/206 (24%)

Query: 136 AFLLGVLKAVVAQ-----------IFMNISL-CS----LNQICDVEIDKINKPYLPLASG 179
           A ++G+L ++VA            IF+ + L CS    +N   D EIDKIN+P  PL  G
Sbjct: 18  AGIVGILGSLVALGGIPPIKTLILIFLVVYLGCSGGNTINDYFDYEIDKINRPNRPLPRG 77

Query: 180 ELSMGTGIAICAGSALLSLALAFLSGSPAVLCAVIAWGLT--GAAYSVPLPF---LRWKS 234
            +S    +        + LALA+L    A L A+ A+ L    A    PLPF   +    
Sbjct: 78  AMSRKAALYYSLLLFAVGLALAYLINIEAFLFALGAYVLMFLYAWKLKPLPFIGNVVVAL 137

Query: 235 HTFMAPFTLVILMGLILQIPYFIHSQTYLLGKPFEVTGPFVFATAIMSIYAF-VN---GL 290
            T   P    I +G I    Y                         ++I AF VN    +
Sbjct: 138 LTGATPIYGAIAVGRIGLAGY-------------------------LAICAFLVNVAREI 172

Query: 291 LKDLPDVEGDKAFGMQTLCVLLGKEK 316
           +KD+ D+EGDKA G +TL +++GK++
Sbjct: 173 MKDIEDIEGDKAKGAKTLPIIIGKKR 198

Length = 277

>gnl|CDD|215028 PLN00012, PLN00012, chlorophyll synthetase; Provisional

 Score = 49.1 bits (117), Expect = 2e-06
 Identities = 49/172 (28%), Positives = 75/172 (43%), Gaps = 16/172 (9%)

Query: 157 SLNQICDVEIDKINKPYLPLASGELSMGTGIAICAGSALLSLALAFL------SGSPAVL 210
           ++N   D EID IN+PY P+ SG +S    I       L  L LA+          P V 
Sbjct: 141 TINDWYDREIDAINEPYRPIPSGAISENEVITQIWVLLLGGLGLAYTLDVWAGHDFPIVF 200

Query: 211 CAVIAWGLTGAAYSVPLPFLRWKSHTFMAPFTLVILMGLILQIPYFIHSQTYLLGKPFEV 270
              +   L    YS P P L+ K + ++  + L       + +P++  +   L G    +
Sbjct: 201 YLALGGSLLSYIYSAP-P-LKLKQNGWIGNYAL---GASYISLPWW--AGQALFG---TL 250

Query: 271 TGPFVFATAIMSIYAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKVLPLCV 322
           T   V  T + SI      ++ D   +EGD+A G+Q+L V  G E    +CV
Sbjct: 251 TPDVVVLTLLYSIAGLGIAIVNDFKSIEGDRALGLQSLPVAFGVETAKWICV 302

Length = 375

>gnl|CDD|237058 PRK12324, PRK12324, phosphoribose diphosphate:decaprenyl-phosphate phosphoribosyltransferase; Provisional

 Score = 44.9 bits (107), Expect = 4e-05
 Identities = 34/106 (32%), Positives = 52/106 (49%), Gaps = 13/106 (12%)

Query: 126 PVQSLSQVTPAFLLGVLKAVVAQIFMNISLCS-----LNQICDVEIDKI--NKPYLPLAS 178
           P+ + + + P  LL VL A V   F    L S     +N I DVE D++   K   P+AS
Sbjct: 33  PIFAGNLLNPGALLKVLLAFVL--F---CLASSAVYLVNDIRDVEADRLHPTKRNRPIAS 87

Query: 179 GELSMGTGIAICAGSALLSLALAFLSGSPAVLCAVIAWGLTGAAYS 224
           G +S+     +     + SLALA+L  SP +   ++ + +   AYS
Sbjct: 88  GVVSVSLAYILAVVLLVASLALAYLL-SPKLALVLLVYLVLNLAYS 132

Length = 295

>gnl|CDD|183811 PRK12882, ubiA, prenyltransferase; Reviewed

 Score = 43.4 bits (103), Expect = 1e-04
 Identities = 54/202 (26%), Positives = 76/202 (37%), Gaps = 57/202 (28%)

Query: 158 LNQICDVEIDKINKPYLPLASGELSMGTGIAICAGSALLSLALAFLSGSPAVLCAVIAWG 217
           +N   D EID+IN+P  P+ SG +S    +A    S LL  A   L+     LC  IA  
Sbjct: 57  INDYFDREIDRINRPDRPIPSGAVSPRGALAF---SILLFAAGVALAFLLPPLCLAIA-- 111

Query: 218 LTGAAYSVPLPFLRWKSHTFMAPFTLVILMGLILQIPYFIH-------SQTYLLGKPF-- 268
                                    L   + L+L              S  YL G  F  
Sbjct: 112 -------------------------LFNSLLLVLYAETLKGTPGLGNASVAYLTGSTFLF 146

Query: 269 --------EVTGPFV-FATAIMSIYAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKVLP 319
                    +    V FA A ++  A    ++KD+ D+EGD+A G +TL +L+G  K L 
Sbjct: 147 GGAAVGTEGLLALLVLFALAALATLA--REIIKDVEDIEGDRAEGARTLPILIGVRKAL- 203

Query: 320 LCVNMMLLGYGGAVVAGATSTL 341
                  +     +VA A S L
Sbjct: 204 ------YVAAAFLLVAVAASPL 219

Length = 276

>gnl|CDD|237243 PRK12875, ubiA, prenyltransferase; Reviewed

 Score = 42.3 bits (100), Expect = 2e-04
 Identities = 53/224 (23%), Positives = 94/224 (41%), Gaps = 33/224 (14%)

Query: 152 NISLCSLNQICDVEIDKINKPYLPLASGELSMGTG----IAICAGSALLSLALAFLSGSP 207
           N+ L  +N + D + D++N               G    +   A S  L+LA   +    
Sbjct: 58  NVFLYGVNDVFDADTDELNPKK---DREREVRYRGDRRVLVAVALSGALALAFLLVLPPA 114

Query: 208 AVLCAVIAWGLTGAAYSVPLPFLRWKSHTFMAPFT--LVILMGLILQIPYFIHSQTYLLG 265
           A   A++A+ +    YS P P LR+K+   +   +  L IL G+     Y + S +  L 
Sbjct: 115 AWP-ALLAFLVLSVEYSAP-P-LRFKTTPVLDSLSNGLYILPGVA---AYALVSGS--LP 166

Query: 266 KPFEVTGPFVFATAIMSIYAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKVLPLCVNMM 325
               V G +++A   M  ++ +       PD+E D+A G++T   +LG+ +    C    
Sbjct: 167 PLLAVAGGWLWAMG-MHTFSAI-------PDIEPDRAAGIRTTATVLGERRTYAYCAACW 218

Query: 326 LLGYGGAVVAGATSTLMISKLVTIIGHIILALMMWLRSRKVDLD 369
           LL    A  A A   L +  L+ +      AL++ +    + +D
Sbjct: 219 LL----AAAAFAAVDLRLGALLLVYP----ALVLAILRAGIAVD 254

Length = 282

>gnl|CDD|236195 PRK08238, PRK08238, hypothetical protein; Validated

 Score = 41.8 bits (99), Expect = 5e-04
 Identities = 41/121 (33%), Positives = 57/121 (47%), Gaps = 21/121 (17%)

Query: 141 VLKAVVAQIFMNISLCS-----LNQICDVEIDKIN--KPYLPLASGELSMGTGIAICAGS 193
           +L A++A  F+  SLC+     LN + D+E D+ +  K   P ASG L +  G+A     
Sbjct: 225 LLAALLA--FLAFSLCASAVYILNDLLDLEADRAHPRKRRRPFASGALPIPFGLAAAPLL 282

Query: 194 ALLSLALAFLSGSPAVLCAVIAWGLTGAAYSVPLPFLRWKSH------TFMAPFTLVILM 247
            L  LALA     PA L  ++A+     AYS     LR K        T  A +TL I+ 
Sbjct: 283 LLAGLALALA-LGPAFLLVLLAYLALTLAYS-----LRLKRKVLVDVLTLAALYTLRIIA 336

Query: 248 G 248
           G
Sbjct: 337 G 337

Length = 479

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	396
PLN02878	280	homogentisate phytyltransferase	100.0
PRK12887	308	ubiA tocopherol phytyltransferase; Reviewed	100.0
PRK12895	286	ubiA prenyltransferase; Reviewed	100.0
PRK13106	300	ubiA prenyltransferase; Reviewed	100.0
TIGR01475	282	ubiA_other putative 4-hydroxybenzoate polyprenyltr	100.0
PRK12874	291	ubiA prenyltransferase; Reviewed	100.0
PRK12870	290	ubiA 4-hydroxybenzoate polyprenyltransferase; Revi	100.0
PRK12888	284	ubiA prenyltransferase; Reviewed	100.0
PRK12886	291	ubiA prenyltransferase; Reviewed	100.0
PLN02809	289	4-hydroxybenzoate nonaprenyltransferase	100.0
PLN00012	375	chlorophyll synthetase; Provisional	100.0
PRK12884	279	ubiA prenyltransferase; Reviewed	100.0
PRK07566	314	bacteriochlorophyll/chlorophyll a synthase; Review	100.0
TIGR01476	283	chlor_syn_BchG bacteriochlorophyll/chlorophyll syn	100.0
PRK09573	279	(S)-2,3-di-O-geranylgeranylglyceryl phosphate synt	100.0
PRK12878	314	ubiA 4-hydroxybenzoate polyprenyltransferase; Revi	100.0
PRK12847	285	ubiA 4-hydroxybenzoate polyprenyltransferase; Revi	100.0
PRK12848	282	ubiA 4-hydroxybenzoate octaprenyltransferase; Revi	100.0
PRK12882	276	ubiA prenyltransferase; Reviewed	100.0
PRK12873	294	ubiA prenyltransferase; Reviewed	100.0
PRK12876	300	ubiA prenyltransferase; Reviewed	100.0
PRK12392	331	bacteriochlorophyll c synthase; Provisional	100.0
COG0382	289	UbiA 4-hydroxybenzoate polyprenyltransferase and r	100.0
TIGR02056	306	ChlG chlorophyll synthase, ChlG. This model repres	100.0
TIGR01474	281	ubiA_proteo 4-hydroxybenzoate polyprenyl transfera	100.0
PRK05951	296	ubiA prenyltransferase; Reviewed	100.0
PRK12869	279	ubiA protoheme IX farnesyltransferase; Reviewed	100.0
PRK04375	296	protoheme IX farnesyltransferase; Provisional	100.0
PRK12883	277	ubiA prenyltransferase UbiA-like protein; Reviewed	100.0
PRK13595	292	ubiA prenyltransferase; Provisional	100.0
PRK06080	293	1,4-dihydroxy-2-naphthoate octaprenyltransferase;	100.0
PRK13362	306	protoheme IX farnesyltransferase; Provisional	99.98
TIGR01473	280	cyoE_ctaB protoheme IX farnesyltransferase. This m	99.98
PRK13387	317	1,4-dihydroxy-2-naphthoate octaprenyltransferase;	99.98
PRK12871	297	ubiA prenyltransferase; Reviewed	99.97
PRK07419	304	1,4-dihydroxy-2-naphthoate octaprenyltransferase;	99.97
PLN02922	315	prenyltransferase	99.97
KOG1381	353	consensus Para-hydroxybenzoate-polyprenyl transfer	99.97
TIGR00751	284	menA 1,4-dihydroxy-2-naphthoate octaprenyltransfer	99.97
COG1575	303	MenA 1,4-dihydroxy-2-naphthoate octaprenyltransfer	99.96
PRK13105	282	ubiA prenyltransferase; Reviewed	99.96
TIGR02235	285	menA_cyano-plnt 1,4-dihydroxy-2-naphthoate phytylt	99.96
PRK12872	285	ubiA prenyltransferase; Reviewed	99.95
COG0109	304	CyoE Polyprenyltransferase (cytochrome oxidase ass	99.95
PF01040	257	UbiA: UbiA prenyltransferase family; InterPro: IPR	99.95
PLN02776	341	prenyltransferase	99.95
PRK12875	282	ubiA prenyltransferase; Reviewed	99.94
PRK13591	307	ubiA prenyltransferase; Provisional	99.93
PRK13592	299	ubiA prenyltransferase; Provisional	99.92
PRK12324	295	phosphoribose diphosphate:decaprenyl-phosphate pho	99.88
PRK08238	479	hypothetical protein; Validated	99.87
KOG1380	409	consensus Heme A farnesyltransferase [Coenzyme tra	99.62
KOG4581	359	consensus Predicted membrane protein [Function unk	99.51
PRK13591	307	ubiA prenyltransferase; Provisional	92.34
COG1575	303	MenA 1,4-dihydroxy-2-naphthoate octaprenyltransfer	89.46
PRK07419	304	1,4-dihydroxy-2-naphthoate octaprenyltransferase;	89.37
PRK13387	317	1,4-dihydroxy-2-naphthoate octaprenyltransferase;	88.25
PRK12872	285	ubiA prenyltransferase; Reviewed	88.14
PLN02922	315	prenyltransferase	88.09
PRK13105	282	ubiA prenyltransferase; Reviewed	87.7
TIGR02235	285	menA_cyano-plnt 1,4-dihydroxy-2-naphthoate phytylt	85.11
PRK12875	282	ubiA prenyltransferase; Reviewed	83.97
TIGR01474	281	ubiA_proteo 4-hydroxybenzoate polyprenyl transfera	83.22
PRK13592	299	ubiA prenyltransferase; Provisional	82.71
PLN00012	375	chlorophyll synthetase; Provisional	81.25
PRK07566	314	bacteriochlorophyll/chlorophyll a synthase; Review	81.04
PRK06080	293	1,4-dihydroxy-2-naphthoate octaprenyltransferase;	80.8
COG0382	289	UbiA 4-hydroxybenzoate polyprenyltransferase and r	80.22
TIGR00751	284	menA 1,4-dihydroxy-2-naphthoate octaprenyltransfer	80.18
PRK12884	279	ubiA prenyltransferase; Reviewed	80.11
TIGR02056	306	ChlG chlorophyll synthase, ChlG. This model repres	80.07

>PLN02878 homogentisate phytyltransferase

Probab=100.00  E-value=1.2e-53  Score=405.95  Aligned_cols=275  Identities=44%  Similarity=0.825  Sum_probs=247.9

Q ss_pred             HHHhhcccCCCCchHHHHHHHHHHHHHHHHHHHHhhhhhhhchhhhhccCCCCccccCccCHHHHHHHHHHHHHHHHHHH
Q 016056          122 VCFLPVQSLSQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDVEIDKINKPYLPLASGELSMGTGIAICAGSALLSLALA  201 (396)
Q Consensus       122 g~llA~~~~~~~~~~~l~~~ll~~l~~~l~~~a~~~iNd~~D~e~D~~n~p~RPl~sG~ls~~~a~~~~~~~~~l~l~l~  201 (396)
                      -+++|.+..++.++..+.+++.+++++++++.+...+|||+|+|+||+|||+||+|||++|+++++.+..++.++|+.++
T Consensus         6 ~~l~a~~~~~~~~~~~~~~~l~~~~~~l~~niyivglNd~~D~EIDkINkP~rPIpSG~iS~~~a~~~~~~~~~lg~~la   85 (280)
T PLN02878          6 VSLLAVESLSDFSPLFFTGLLEALVPALLMNIYIVGLNQLYDIEIDKVNKPYLPLASGEFSVATGVAIVTSFAIMSFGMG   85 (280)
T ss_pred             HhHHHhhccccccHHHHHHHHHHHHHHHhhhhheechhhhhhhcccccCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence            35566655556666677788889999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhcHHHHHHHHHHHHHHhheecCCCCccCccccCchhHHHHHHHHHHHHHHHHHHHhhhhhhCCCCCChHHHHHHHHHH
Q 016056          202 FLSGSPAVLCAVIAWGLTGAAYSVPLPFLRWKSHTFMAPFTLVILMGLILQIPYFIHSQTYLLGKPFEVTGPFVFATAIM  281 (396)
Q Consensus       202 ~~lg~~~l~l~l~~~~~l~~~Ys~~lpp~rlKr~~~~g~l~vg~~~g~~~~lg~~~~~~~~l~g~~~~~~~~~~~~~~~~  281 (396)
                      +.+|++++.++++.+++++++||..+||+|+||++++...++....|..+.+|++.+++++++|++..++.+.++.++++
T Consensus        86 ~~~g~~~l~~al~~~~~lg~~YS~~lp~lr~k~~~~~aa~~i~~vr~~~v~l~~~~h~~~~~~g~~~~~~~~~~~~~~f~  165 (280)
T PLN02878         86 WIVGSWPLFWALFVSFVLGTAYSINLPLLRWKRSAVAAASCILAVRAVVVQLAFFLHMQTHVLGRPAVFTRPLIFATAFM  165 (280)
T ss_pred             HHHChHHHHHHHHHHHHHHHHHHccCCCcccHHHHHHHHHHHHHHHHHHhhhhHHHhHHHHHhCCccccchhHHHHHHHH
Confidence            99998877777667778999999877999999999988888777777888999999988888887665565666666677


Q ss_pred             HHHHHHHHHHHhCCChHHHHHcCCccchhhhccccHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHH
Q 016056          282 SIYAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKVLPLCVNMMLLGYGGAVVAGATSTLMISKLVTIIGHIILALMMWL  361 (396)
Q Consensus       282 ~l~~~~~~~~~d~~D~egD~~~G~~Tlpv~lG~~~a~~l~~~l~~~ay~~~~~~g~~~~~~~~~~~~~~g~~i~~~~l~~  361 (396)
                      .++..+++++||++|+|||++.|++|+|+++|++++.+++..++.++|+.+++.|+.....+...++..||++++..+|+
T Consensus       166 ~~f~~~i~i~KDi~DieGD~~~Gi~Tlpv~lG~~~~~~i~~~ll~~aY~~~i~~g~~~~~~~~~~~~~~~h~~l~~~L~~  245 (280)
T PLN02878        166 CFFSVVIALFKDIPDVEGDRIFGIRSFSVRLGQKRVFWLCVNLLEMAYAAAILVGASSSFLWSKIITVLGHGILASILWQ  245 (280)
T ss_pred             HHHHHHHHHHhhCcCchhHHHCCCceechhhChHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Confidence            88888999999999999999999999999999999999999999999998888888877778888999999999999999


Q ss_pred             HHHHccCCChhhHHHHHHHhHHHHHHHHHHhhhcC
Q 016056          362 RSRKVDLDNFDSQFGFYMFLWQLNYVEYILIHFLR  396 (396)
Q Consensus       362 ~~~~~d~~~~~~~~~f~~~iw~l~~~~y~~~~~~~  396 (396)
                      |.+++|++++++..+||||||++||+||+++||.|
T Consensus       246 rs~~vD~~sk~~i~~fY~fiwklfy~ey~l~p~~~  280 (280)
T PLN02878        246 RAQSVDLSSKAAITSFYMFIWKLFYAEYFLIPLVR  280 (280)
T ss_pred             HhHhcCcccHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            99999999999999999999999999999999998

>PRK12887 ubiA tocopherol phytyltransferase; Reviewed

Probab=100.00  E-value=4.7e-52  Score=406.75  Aligned_cols=304  Identities=31%  Similarity=0.491  Sum_probs=251.7

Q ss_pred             chhhHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHhhcccCCC-CchHHHHHHHHHHHHHHHHHHHHhhhhhhhchhhh
Q 016056           89 APSFLEVVKRKLNAISHVTRYYAQINIIVSVTSVCFLPVQSLSQ-VTPAFLLGVLKAVVAQIFMNISLCSLNQICDVEID  167 (396)
Q Consensus        89 ~~~~~~~~~~~l~~~~~l~Rp~~~~~~~l~~l~g~llA~~~~~~-~~~~~l~~~ll~~l~~~l~~~a~~~iNd~~D~e~D  167 (396)
                      |++.+++..+.+++|+|++|||+++++.++++.+.+++.....+ .....+...+.++++...++.+.+.+|||+|+|+|
T Consensus         2 ~~~~~~~~~~~l~~~~~l~Rp~t~igt~l~~~~~~l~a~~~~~~~~~~~~~~~~l~~~~~~~~~nv~i~~iNd~~D~~iD   81 (308)
T PRK12887          2 PKNPLQPMTSWLYALWKFSRPHTIIGTSLSVLGLYLIAIAASSNTIALANLGLLLGAWIACLCGNVYIVGLNQLTDIEID   81 (308)
T ss_pred             CcchhhhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHH
Confidence            46677888889999999999999999999998888776432221 12212333444444455555555559999999999


Q ss_pred             hccCCCCccccCccCHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHhheecCCCCccCccccCchhHHHHHHHH
Q 016056          168 KINKPYLPLASGELSMGTGIAICAGSALLSLALAFLSGSPAVLCAVIAWGLTGAAYSVPLPFLRWKSHTFMAPFTLVILM  247 (396)
Q Consensus       168 ~~n~p~RPl~sG~ls~~~a~~~~~~~~~l~l~l~~~lg~~~l~l~l~~~~~l~~~Ys~~lpp~rlKr~~~~g~l~vg~~~  247 (396)
                      ++|||+||+++|++|+++++.+.+++.++|+.+++..|++.+.++ +++.+++++||.  ||+|+||+++.++++++..+
T Consensus        82 ~inkp~rPiasG~ls~~~a~~~~~~~~~lal~la~~~~~~~~~~~-~~~~~lg~~Ys~--pP~rlKr~~~~~~~~i~~~~  158 (308)
T PRK12887         82 RINKPHLPLAAGEFSRRQGQRIVIITGILALILAALLGPWLLITV-GISLLIGTAYSL--PPIRLKRFPLLAALCIFTVR  158 (308)
T ss_pred             hcCCCCCCcCCcccCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHHHHcC--CchhhcccchhHHHHHHHHH
Confidence            999999999999999999999999999999999999997665444 578889999998  99999999998999988888


Q ss_pred             HHHHHHHHHHHhhhhhhCCCCCChHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHcCCccchhhhccccHHHHHHHHHHH
Q 016056          248 GLILQIPYFIHSQTYLLGKPFEVTGPFVFATAIMSIYAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKVLPLCVNMMLL  327 (396)
Q Consensus       248 g~~~~lg~~~~~~~~l~g~~~~~~~~~~~~~~~~~l~~~~~~~~~d~~D~egD~~~G~~Tlpv~lG~~~a~~l~~~l~~~  327 (396)
                      |..+.+|.+.+.... .+.....+...++..+++.+|+.++++.||++|+|||++.|+||+|+++|++++.+++..++.+
T Consensus       159 g~i~~~g~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~l~~di~D~egD~~~Gi~Tlav~lG~~~a~~l~~~ll~~  237 (308)
T PRK12887        159 GVIVNLGLFLHFQWL-LGGSVLIPPTVWLLTLFVLVFTFAIAIFKDIPDMEGDRQYQITTFTLRLGKQAVFKLSCWVLTA  237 (308)
T ss_pred             HHHHHHHHHHHHHHH-HhccccCcHHHHHHHHHHHHHHHHHHHHHhccchhhHHHcCCcchhHHHhHHHHHHHHHHHHHH
Confidence            877778876653322 2223334555556666777899999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHccCCChhhHHHHHHHhHHHHHHHHHHhhhcC
Q 016056          328 GYGGAVVAGATSTLMISKLVTIIGHIILALMMWLRSRKVDLDNFDSQFGFYMFLWQLNYVEYILIHFLR  396 (396)
Q Consensus       328 ay~~~~~~g~~~~~~~~~~~~~~g~~i~~~~l~~~~~~~d~~~~~~~~~f~~~iw~l~~~~y~~~~~~~  396 (396)
                      +|+..++.+.....++....+..+|++.+..+++|.+++|.+++++..+||||||++||+||+++||.|
T Consensus       238 ~y~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~iw~l~~~ey~~~~~~~  306 (308)
T PRK12887        238 CYLGMIAVGLLSLPTVNPAFLIVSHLILLALLWWRSQRVDLQDKQAIAQFYQFIWKLFFLEYLLFPIAC  306 (308)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999888777766666666677799999999999999999999999999999999999999999999975

>PRK12895 ubiA prenyltransferase; Reviewed

Probab=100.00  E-value=2.5e-36  Score=292.09  Aligned_cols=263  Identities=16%  Similarity=0.109  Sum_probs=205.8

Q ss_pred             HHHHHHHhhccchHHHHHHHHHHHHHhhcccCCCCchHHHHHHHHHHHHHHHHHHHHhhhhhhhchhhhhccCC--CCcc
Q 016056           99 KLNAISHVTRYYAQINIIVSVTSVCFLPVQSLSQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDVEIDKINKP--YLPL  176 (396)
Q Consensus        99 ~l~~~~~l~Rp~~~~~~~l~~l~g~llA~~~~~~~~~~~l~~~ll~~l~~~l~~~a~~~iNd~~D~e~D~~n~p--~RPl  176 (396)
                      ++|+|+|++||++.......++.|.++|.+..+  ++..   +++.+++++++++++|++||++|+|+|++|+|  +||+
T Consensus         2 ~~~~~~el~k~~~t~~al~~a~~g~~lA~~~~~--~~~~---l~l~~~~~~~~rsag~~~Ndi~Dr~iD~~~~RT~~RPL   76 (286)
T PRK12895          2 NFRDIVDYIKLEHTVFDLPFILAGYVIAAGHYI--HPIK---ILLILIAAVSARTSAMSINRIEGLRYDMINPRKKDWAL   76 (286)
T ss_pred             cHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCCC--CHHH---HHHHHHHHHHHHHHHHHHHhHHHhcccCCCCcCCCCCC
Confidence            478999999999999999999999998854322  2211   33456678899999999999999999999965  9999


Q ss_pred             ccCccCHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHhheecCCCCccCccccCchhHHHHHHHHHHHHHHHHH
Q 016056          177 ASGELSMGTGIAICAGSALLSLALAFLSGSPAVLCAVIAWGLTGAAYSVPLPFLRWKSHTFMAPFTLVILMGLILQIPYF  256 (396)
Q Consensus       177 ~sG~ls~~~a~~~~~~~~~l~l~l~~~lg~~~l~l~l~~~~~l~~~Ys~~lpp~rlKr~~~~g~l~vg~~~g~~~~lg~~  256 (396)
                      |+|++|++||+.+.+++.++++.++..+|+.++.++. ....+...|+.      +||+++++|+.+|+..|.++..|+.
T Consensus        77 psG~is~~~A~~~~~~~~~~~~~~~~~ln~l~~~l~~-~~~~l~~~yp~------~KR~t~~~~~~lG~~~g~~~l~g~~  149 (286)
T PRK12895         77 VSGRIKMREAIAFTIIFIAIFEICTFLLNRLVFILSP-IVIFLFIIDPF------LKRYTAWRHIYMGSIIGLGVLAGYL  149 (286)
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHHH------HHhCccccHHHHHHHHHhHHHHHHH
Confidence            9999999999999999999999888889988776553 44555566765      8999999999999999977777775


Q ss_pred             HHhhhhhhCCCCCChHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHcCCccchhhhccccHHHHHHHHHHHHHHHHHHHH
Q 016056          257 IHSQTYLLGKPFEVTGPFVFATAIMSIYAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKVLPLCVNMMLLGYGGAVVAG  336 (396)
Q Consensus       257 ~~~~~~l~g~~~~~~~~~~~~~~~~~l~~~~~~~~~d~~D~egD~~~G~~Tlpv~lG~~~a~~l~~~l~~~ay~~~~~~g  336 (396)
                      +..     | ..++....+++.+...+|+.++|++|+++|+|+|++.|+||+|+++|++++.++...+..++.....+.|
T Consensus       150 Av~-----g-~~~~~~~~~~l~~~~~~W~~g~D~iYa~qD~e~D~~~Gv~S~a~~fG~~~~~~i~~~~~~~~~~~~~~~g  223 (286)
T PRK12895        150 AVI-----P-AFPYNLLIYIIFISSSLWIAGFDIIYVIPDIEYDKINGLKTIMNTYGIKNGLYISDIFHISSLILFWISG  223 (286)
T ss_pred             HHc-----C-CCCchHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHcCCCchHHHHCCccHHHHHHHHHHHHHHHHHHHH
Confidence            532     2 2222222334445567899999999999999999999999999999999988776566666655555555


Q ss_pred             HHhhhhhHHHHHHHHHHHHHHHHHHHHHHccCCChhhH-HHHH-HHhHH
Q 016056          337 ATSTLMISKLVTIIGHIILALMMWLRSRKVDLDNFDSQ-FGFY-MFLWQ  383 (396)
Q Consensus       337 ~~~~~~~~~~~~~~g~~i~~~~l~~~~~~~d~~~~~~~-~~f~-~~iw~  383 (396)
                      ....    +..+.++.++.+..+.+|++.+|.+|+++| .+|| .+.|-
T Consensus       224 ~~~~----~~~y~~~~~~~~~~l~~q~~~~~~~~~~~~~~~~F~~N~~i  268 (286)
T PRK12895        224 IYIR----TLWYLAALIIIYTLVIYQHLIIDPRNPINKRMSFFNANSFI  268 (286)
T ss_pred             HHHh----hHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHcCHH
Confidence            4432    245667888888899999999999998888 6544 55443

>PRK13106 ubiA prenyltransferase; Reviewed

Probab=100.00  E-value=1.2e-35  Score=289.63  Aligned_cols=271  Identities=18%  Similarity=0.191  Sum_probs=203.8

Q ss_pred             HHHHHHHHHHhhccchHHHHHHHHHHHHHhhcccCCCCchHHHHHHHHHHHHHHHHHHHHhhhhhhhchhhhhccCC--C
Q 016056           96 VKRKLNAISHVTRYYAQINIIVSVTSVCFLPVQSLSQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDVEIDKINKP--Y  173 (396)
Q Consensus        96 ~~~~l~~~~~l~Rp~~~~~~~l~~l~g~llA~~~~~~~~~~~l~~~ll~~l~~~l~~~a~~~iNd~~D~e~D~~n~p--~  173 (396)
                      ..+++++|+|++||++.++...+++.|..+|.++.+  ++..   +++++++.+++++++|++|||+|+|+|++|+|  +
T Consensus        11 ~~~~l~~yl~L~R~~~~~~~l~~~~~g~~la~~~~~--~~~~---l~l~~lg~~l~~~a~~~~Nd~~D~diD~~~~RT~~   85 (300)
T PRK13106         11 TRSKFYIILRFLRIEQTFFSLPMAYLGAFVAIKGIP--PIST---LILIFLALFFLRTAGMTNDNLADLEIDAKNPRTKN   85 (300)
T ss_pred             hHHHHHHHHHHHccccHHHHHHHHHHHHHHHcCCCC--CHHH---HHHHHHHHHHHHHHHHHHHhhHHhccccCCCccCC
Confidence            457899999999999999998888999998865433  3222   34567899999999999999999999999964  8


Q ss_pred             CccccCccCHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHhheecCCCCccCccccCchhHHHHHHHHHHHHHH
Q 016056          174 LPLASGELSMGTGIAICAGSALLSLALAFLSGSPAVLCAVIAWGLTGAAYSVPLPFLRWKSHTFMAPFTLVILMGLILQI  253 (396)
Q Consensus       174 RPl~sG~ls~~~a~~~~~~~~~l~l~l~~~lg~~~l~l~l~~~~~l~~~Ys~~lpp~rlKr~~~~g~l~vg~~~g~~~~l  253 (396)
                      ||+|+|++|++|++.+.+++.+.++.++..+|+.+..++. ++.++.+.|+.      +||+++++|+.+|+.+|..+..
T Consensus        86 RPl~sG~is~~~A~~~~~~~~~~~~~~~~~ln~~~~~l~~-~~~~~~~~Y~~------~KR~t~~~~~~lg~~~~~~~~~  158 (300)
T PRK13106         86 RPLVTGAIKISEAKALITAGLILFFASAYLVNRWALLLSP-IVALIAMSYPY------MKRYTAFANYHLASIQGLAVFS  158 (300)
T ss_pred             CCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHhH------HhcCCcchHHHHHHHHHHHHHH
Confidence            9999999999999999877777777777778877766553 44556678986      7999999999999999877777


Q ss_pred             HHHHHhhhhhhCCCCCChHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHcCCccchhhhccccHHHHHHHHHHHHHHHHH
Q 016056          254 PYFIHSQTYLLGKPFEVTGPFVFATAIMSIYAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKVLPLCVNMMLLGYGGAV  333 (396)
Q Consensus       254 g~~~~~~~~l~g~~~~~~~~~~~~~~~~~l~~~~~~~~~d~~D~egD~~~G~~Tlpv~lG~~~a~~l~~~l~~~ay~~~~  333 (396)
                      |+.+..+..........+...+++.....+|+.+++++|+++|+|+|++.|+||+|+++| ++++++...+..++.....
T Consensus       159 G~~a~~g~~~~~~~~~l~~~~~~l~~~~~lw~~~~d~iya~~D~e~D~~~Gi~Slpv~~G-~~a~~~~~~~~~~~v~l~~  237 (300)
T PRK13106        159 GAVAVLGLYANSLIQVLLRVPWLFVIGTILWAAGFDLYNHIPDAEFDREMGLHSFAVVLG-KWALTFAGLNQLFSVVLDL  237 (300)
T ss_pred             HHHHHcCCcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHccchhhHHHCCCCccHHHHh-hhHHHHHHHHHHHHHHHHH
Confidence            765432110000000011122233344568999999999999999999999999999999 8888877777766666666


Q ss_pred             HHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHccCCChhhHHHHHHHhHH
Q 016056          334 VAGATSTLMISKLVTIIGHIILALMMWLRSRKVDLDNFDSQFGFYMFLWQ  383 (396)
Q Consensus       334 ~~g~~~~~~~~~~~~~~g~~i~~~~l~~~~~~~d~~~~~~~~~f~~~iw~  383 (396)
                      ..+....++   ..|.++..+....+.+|+..++.+ ++..+.|..+.|-
T Consensus       238 ~~~~~~~lg---~~y~~~~~~~~~~l~~~~~~~~~~-~~~~~~F~~n~~i  283 (300)
T PRK13106        238 LGDLYYGLG---PIAIAATILHGLIMAYAYYLASKK-GDFGRAFYYNIYS  283 (300)
T ss_pred             HHHHHhCCc---HHHHHHHHHHHHHHHHHHHHhCCc-hHHHHHHHHccHH
Confidence            555554443   345566667778889999988887 5566777666443

>TIGR01475 ubiA_other putative 4-hydroxybenzoate polyprenyltransferase

Probab=100.00  E-value=2.6e-35  Score=285.82  Aligned_cols=260  Identities=16%  Similarity=0.164  Sum_probs=200.8

Q ss_pred             HHHHHHHhhccchHHHHHHHHHHHHHhhcccCCCCchHHHHHHHHHHHHHHHHHHHHhhhhhhhchhhhhcc--CCCCcc
Q 016056           99 KLNAISHVTRYYAQINIIVSVTSVCFLPVQSLSQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDVEIDKIN--KPYLPL  176 (396)
Q Consensus        99 ~l~~~~~l~Rp~~~~~~~l~~l~g~llA~~~~~~~~~~~l~~~ll~~l~~~l~~~a~~~iNd~~D~e~D~~n--~p~RPl  176 (396)
                      ++++|+|++||++.......+..|.++|.++.+  ++..   +++++++.+++++++|++|||+|+|+|++|  +|+||+
T Consensus         1 ~~~~~~~L~r~~~~~~~~~~~~~g~~la~~~~~--~~~~---~~l~~l~~~l~~~a~~~~Nd~~D~~~D~~~~Rt~~RPl   75 (282)
T TIGR01475         1 KFKDILELIKFEHTVFALPFAYAGALLAAKGLP--GLKT---LILILIAAVSARTAAMAFNRIIDRAIDARNPRTKNRPL   75 (282)
T ss_pred             CHHHHHHHHccccHHHHHHHHHHHHHHhcCCCC--CHHH---HHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccCCCCC
Confidence            468999999999999998888889988855422  3321   455778999999999999999999999999  569999


Q ss_pred             ccCccCHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHhheecCCCCccCccccCchhHHHHHHHHHHHHHHHHH
Q 016056          177 ASGELSMGTGIAICAGSALLSLALAFLSGSPAVLCAVIAWGLTGAAYSVPLPFLRWKSHTFMAPFTLVILMGLILQIPYF  256 (396)
Q Consensus       177 ~sG~ls~~~a~~~~~~~~~l~l~l~~~lg~~~l~l~l~~~~~l~~~Ys~~lpp~rlKr~~~~g~l~vg~~~g~~~~lg~~  256 (396)
                      ++|++|+++++.+++++.++++.++..+|+.+..++ ..+.++.+.|+.      +||++.+++++.|+..|.++..|+.
T Consensus        76 ~sG~is~~~a~~~~~~~~~~~~~~~~~l~~~~~~l~-~~~~~~~~~Y~~------~Kr~~~~~~~~~g~~~~~~~~~g~~  148 (282)
T TIGR01475        76 VSGLISKKEARTMIILSLALFLSASYFLNPLAFILS-PLVLLVLIIYPY------TKRFTFLCHYVLGSTYGLAPLAGWV  148 (282)
T ss_pred             CCCCcCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHHHHhh------HhccccccHHHHHHHHHHHHHHHHH
Confidence            999999999999998888778888888887766554 345556789986      7999999999999988877777765


Q ss_pred             HHhhhhhhCCCCCChHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHcCCccchhhhccccHHHHHHHHHHHHHHHHHHHH
Q 016056          257 IHSQTYLLGKPFEVTGPFVFATAIMSIYAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKVLPLCVNMMLLGYGGAVVAG  336 (396)
Q Consensus       257 ~~~~~~l~g~~~~~~~~~~~~~~~~~l~~~~~~~~~d~~D~egD~~~G~~Tlpv~lG~~~a~~l~~~l~~~ay~~~~~~g  336 (396)
                      +..     | ..+.....+++.....+|+.+.+++||++|+|+|+++|+||+|+++|+|++.++...+..+++....+.+
T Consensus       149 a~~-----g-~~~~~~~~~ll~~~~~~w~~~~~~i~~~~D~e~D~~~G~~tlpv~~G~~~a~~~~~~~~~~~~~~~~~~~  222 (282)
T TIGR01475       149 AVI-----G-TISFFLVAWLLGIGVGFWIAGFDLIYAIQDYEFDRKNGLHSIPARFGIKAALKIASLSHVITFILLLLVG  222 (282)
T ss_pred             HHh-----C-CccchHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHcCCCchHHHhchHHHHHHHHHHHHHHHHHHHHHH
Confidence            432     2 2221122333444557889999999999999999999999999999999998887776767776665555


Q ss_pred             HHhhhhhHHHHHHHHHHHHHHHHHHHHHHccCCChhhHHH-HHH
Q 016056          337 ATSTLMISKLVTIIGHIILALMMWLRSRKVDLDNFDSQFG-FYM  379 (396)
Q Consensus       337 ~~~~~~~~~~~~~~g~~i~~~~l~~~~~~~d~~~~~~~~~-f~~  379 (396)
                      .....+   ..+.++..+....++++.+..|.+|++.+++ |+.
T Consensus       223 ~~~~~g---~~y~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ff~  263 (282)
T TIGR01475       223 FYVGNG---YIALLALILIGLILAYEHYIVDPGDQSKIQRAFFY  263 (282)
T ss_pred             HHhhCc---HHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence            544433   3444555556677888989999988877765 443

A fairly deep split separates this polyprenyltransferase subfamily from the set of mitochondrial and proteobacterial 4-hydroxybenzoate polyprenyltransferases, described in TIGR01474. Protoheme IX farnesyltransferase (heme O synthase) (TIGR01473) is more distantly related. Because no species appears to have both this protein and a member of TIGR01474, it is likely that This model represents 4-hydroxybenzoate polyprenyltransferase, a critical enzyme of ubiquinone biosynthesis, in the Archaea, Gram-positive bacteria, Aquifex aeolicus, the Chlamydias, etc.

>PRK12874 ubiA prenyltransferase; Reviewed

Probab=100.00  E-value=8.5e-35  Score=283.01  Aligned_cols=265  Identities=18%  Similarity=0.183  Sum_probs=200.7

Q ss_pred             HHHHHHHHHHHHhhccchHHHHHHHHHHHHHhhccc---CCCCchHHHHHHHHHHHHHHHHHHHHhhhhhhhchhhhhcc
Q 016056           94 EVVKRKLNAISHVTRYYAQINIIVSVTSVCFLPVQS---LSQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDVEIDKIN  170 (396)
Q Consensus        94 ~~~~~~l~~~~~l~Rp~~~~~~~l~~l~g~llA~~~---~~~~~~~~l~~~ll~~l~~~l~~~a~~~iNd~~D~e~D~~n  170 (396)
                      ++.++++++|+|++||++.+.+...++.|.++|...   ....++..   +++++++.+++++++|++|||+|+|+|++|
T Consensus         2 ~~~~~~l~~y~~l~r~~~~~~~l~~a~~g~~la~~~~~~~~~~~~~~---~~l~~l~~~l~~~a~~~~Nd~~DrdiD~~~   78 (291)
T PRK12874          2 KKFTKKLKDISELVVFKHSIFSLPFIFIAMIVASKQKNDTGWFGFKL---LILGILAAVSARNFAMAFNRLVDRDIDKDN   78 (291)
T ss_pred             chHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhhhccCCCCCHHH---HHHHHHHHHHHHHHHHHHHhhhhhccccCC
Confidence            356678999999999999999988888888887521   11233332   455778889999999999999999999999


Q ss_pred             CC--CCccccCccCHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHhheecCCCCccCccccCchhHHHHHHHHH
Q 016056          171 KP--YLPLASGELSMGTGIAICAGSALLSLALAFLSGSPAVLCAVIAWGLTGAAYSVPLPFLRWKSHTFMAPFTLVILMG  248 (396)
Q Consensus       171 ~p--~RPl~sG~ls~~~a~~~~~~~~~l~l~l~~~lg~~~l~l~l~~~~~l~~~Ys~~lpp~rlKr~~~~g~l~vg~~~g  248 (396)
                      +|  +||+++|++|+++++.+++++.++++.+++.+|+.+..++ +..++....||.      +||++.++++.+|+.+|
T Consensus        79 ~RT~~RPl~sG~is~~~a~~~~~~~~~~~~~~~~~~n~~~~~l~-~~~~~~~~~Y~~------~KR~t~~~~~~~g~~~~  151 (291)
T PRK12874         79 PRTANRPSVDGRISVKSMVLFIVLNALIFIGVSYFINPLAFKLS-FPFLIVLGGYSY------FKRFSSLAHLVLGLSLG  151 (291)
T ss_pred             CCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHHHHhh------hcccccccHHHHHHHHH
Confidence            85  8999999999999999998888888888888888776555 345666889997      89999999999999999


Q ss_pred             HHHHHHHHHHhhhhhhCCCCCChHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHcCCccchhhhccccHHHHHHHHHHHH
Q 016056          249 LILQIPYFIHSQTYLLGKPFEVTGPFVFATAIMSIYAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKVLPLCVNMMLLG  328 (396)
Q Consensus       249 ~~~~lg~~~~~~~~l~g~~~~~~~~~~~~~~~~~l~~~~~~~~~d~~D~egD~~~G~~Tlpv~lG~~~a~~l~~~l~~~a  328 (396)
                      .++.+|+.+..     | ..  +.+.+++.+...+|+.+.+++++++|+|+|+++|++|+|+++|++++.++.......+
T Consensus       152 ~~~l~G~~av~-----g-~~--~~~~~~l~~~~~~w~~~~~~~~a~~D~~~D~~~Gi~slpv~~G~~~~~~~~~~~~~~~  223 (291)
T PRK12874        152 LAPIAGVVAVL-----G-EI--PLWSVFLALGVMFWVAGFDLLYSLQDMEFDKKRGLHSIPSKFGEKATLFISRLFHLLA  223 (291)
T ss_pred             HHHHHHHHHHc-----C-CC--cHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHcCCCcccHHhhhHhHHHHHHHHHHHH
Confidence            88888876531     2 22  2223344455578999999999999999999999999999999998887655544444


Q ss_pred             HHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHccCCChhhHHHHHH
Q 016056          329 YGGAVVAGATSTLMISKLVTIIGHIILALMMWLRSRKVDLDNFDSQFGFYM  379 (396)
Q Consensus       329 y~~~~~~g~~~~~~~~~~~~~~g~~i~~~~l~~~~~~~d~~~~~~~~~f~~  379 (396)
                      .+.....+......   ..+.++..+.+..++++.+..+.++++.++.|+.
T Consensus       224 ~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ff~  271 (291)
T PRK12874        224 VLFWLLFVWCAHLG---LFAYLGVIVSALILLYEHYLVRKDFKKIDKAFFT  271 (291)
T ss_pred             HHHHHHHHHHhcch---HHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHH
Confidence            43333333322222   2334455566667888888887777767777654

>PRK12870 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed

Probab=100.00  E-value=5.4e-35  Score=284.44  Aligned_cols=265  Identities=19%  Similarity=0.205  Sum_probs=199.1

Q ss_pred             HHHHHHHHHHhhccchHHHHH---HHHHHHHHhhcccCCCCchHHHHHHHHHHHHHHHHHHHHhhhhhhhchhhhhccCC
Q 016056           96 VKRKLNAISHVTRYYAQINII---VSVTSVCFLPVQSLSQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDVEIDKINKP  172 (396)
Q Consensus        96 ~~~~l~~~~~l~Rp~~~~~~~---l~~l~g~llA~~~~~~~~~~~l~~~ll~~l~~~l~~~a~~~iNd~~D~e~D~~n~p  172 (396)
                      .++++++|+|++||+++.++.   ++++.|..+|.+..+  ++..   +++++++.+++++++|++|||+|+|+|++|+|
T Consensus         5 ~~~~~~~y~~L~R~~kp~~~~l~~~~~~~g~~lA~~~~~--~~~~---~~l~~lg~~~~~~a~~~~Nd~~D~~iD~~~~R   79 (290)
T PRK12870          5 LEPTWLAIIRLLRWDKPAGRLILMIPALWAVFLAAHGLP--PLPL---VGIIILGALATSAAGCVVNDLWDRDIDPQVER   79 (290)
T ss_pred             cchhHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHccCCC--CHHH---HHHHHHHHHHHHHHHHHHHhHHHhccCCCCCc
Confidence            346789999999999987765   577888888855432  2221   34567888999999999999999999987664


Q ss_pred             --CCccccCccCHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHhheecCCCCccCccccCchhHHHHHHHHHHH
Q 016056          173 --YLPLASGELSMGTGIAICAGSALLSLALAFLSGSPAVLCAVIAWGLTGAAYSVPLPFLRWKSHTFMAPFTLVILMGLI  250 (396)
Q Consensus       173 --~RPl~sG~ls~~~a~~~~~~~~~l~l~l~~~lg~~~l~l~l~~~~~l~~~Ys~~lpp~rlKr~~~~g~l~vg~~~g~~  250 (396)
                        +||+++|++|++|+..+++++.++++.+++.+|+.++.+++ .+.++.++||.      .||++.++++++|+.+|.+
T Consensus        80 t~~RPL~sG~is~~~a~~~~~~~~~~~~~l~~~l~~~~~~l~~-~~~~~~~~Y~~------~KR~t~~~~~~lg~~~~~~  152 (290)
T PRK12870         80 TRFRPLASRRLSVKVGIVIAIVALLCAAGLAFFLNPLSFWLCV-AAVPVIFLYPL------AKRVFPVPQLVLAIAWGFA  152 (290)
T ss_pred             ccCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHhhh------hhhccccceeeehHHHHhH
Confidence              89999999999999999999999999998888887766653 46667889986      7999989999999988877


Q ss_pred             HHHHHHHHhhhhhhCCCCCChHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHcCCccchhhhccccHHHHHHHHHHHHHH
Q 016056          251 LQIPYFIHSQTYLLGKPFEVTGPFVFATAIMSIYAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKVLPLCVNMMLLGYG  330 (396)
Q Consensus       251 ~~lg~~~~~~~~l~g~~~~~~~~~~~~~~~~~l~~~~~~~~~d~~D~egD~~~G~~Tlpv~lG~~~a~~l~~~l~~~ay~  330 (396)
                      +..|+.+..     | ..  +...+++.+...+|+.+++++++++|+|+|+++|+||+|+++|++++.++.. +..++..
T Consensus       153 ~l~g~~a~~-----g-~~--~~~~~~l~~~~~lw~~~~d~~~a~~D~e~D~~~G~~slav~~G~~~~~~~~~-~~~~~~~  223 (290)
T PRK12870        153 VLISWSAVT-----G-HL--DLGTWLLWAATVFWTLGFDTVYAMSDREDDLRIGVNSSAIFFGRYAPEAIGL-FFALTVG  223 (290)
T ss_pred             HHHHHHHHc-----C-CC--CHHHHHHHHHHHHHHHHHHHHHHhhhHhhHHHCCCcchhHHhccccHHHHHH-HHHHHHH
Confidence            666665421     2 22  2233344455678999999999999999999999999999999998877654 3333333


Q ss_pred             HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHc--cCCChhhHHHHH-HHhHHH
Q 016056          331 GAVVAGATSTLMISKLVTIIGHIILALMMWLRSRKV--DLDNFDSQFGFY-MFLWQL  384 (396)
Q Consensus       331 ~~~~~g~~~~~~~~~~~~~~g~~i~~~~l~~~~~~~--d~~~~~~~~~f~-~~iw~l  384 (396)
                      .....+.....+   ..+.++..+....+.++...+  |.++++.|++|| .+.|-+
T Consensus       224 ~l~~~~~~~~~~---~~y~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~F~~n~~~g  277 (290)
T PRK12870        224 FLAILGVLLELH---LPFWIGLAIAAVLWARQYRRLRQANLPPLAYGQLFLQNVWIG  277 (290)
T ss_pred             HHHHHHHHhCCc---HHHHHHHHHHHHHHHHHHHHhcccCCChHHHHHHHHHhhHHH
Confidence            333444444333   234455666677888898888  666777776665 444443

>PRK12888 ubiA prenyltransferase; Reviewed

Probab=100.00  E-value=1.8e-34  Score=279.73  Aligned_cols=261  Identities=17%  Similarity=0.067  Sum_probs=198.9

Q ss_pred             HHHHHHHhhccchHHHHHHHHHHHHHhhcc-cCCCCchHHHHHHHHHHHHHHHHHHHHhhhhhhhchhhhhccCC--CCc
Q 016056           99 KLNAISHVTRYYAQINIIVSVTSVCFLPVQ-SLSQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDVEIDKINKP--YLP  175 (396)
Q Consensus        99 ~l~~~~~l~Rp~~~~~~~l~~l~g~llA~~-~~~~~~~~~l~~~ll~~l~~~l~~~a~~~iNd~~D~e~D~~n~p--~RP  175 (396)
                      ++++|+|++||++.+.....++.|.+.+.. ..+..++..   +++.+++.+++++++|++|||+|+|+|++|+|  +||
T Consensus         1 ~~~~~~~l~r~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~---~~l~~l~~~l~~~a~~~~Nd~~Dr~iD~~~~RT~~RP   77 (284)
T PRK12888          1 RVRAFLRLVAIEHSVFALPFAYIAALTAMFASDGSVHWAD---LLLVTVAMVGARTFAMAANRIIDREIDARNPRTAGRE   77 (284)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHH---HHHHHHHHHHHHHHHHHHHhHHhhCCCCCCCCCCCCC
Confidence            368999999999988876666666655531 111233322   45577899999999999999999999999984  899


Q ss_pred             cccCccCHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHhheecCCCCccCccccCchhHHHHHHHHHHHHHHHH
Q 016056          176 LASGELSMGTGIAICAGSALLSLALAFLSGSPAVLCAVIAWGLTGAAYSVPLPFLRWKSHTFMAPFTLVILMGLILQIPY  255 (396)
Q Consensus       176 l~sG~ls~~~a~~~~~~~~~l~l~l~~~lg~~~l~l~l~~~~~l~~~Ys~~lpp~rlKr~~~~g~l~vg~~~g~~~~lg~  255 (396)
                      +|+|++|+++++.+++++.++++.++..+|+.++.++ .++++..+.|+.      .||+++++++.+|+.++.++..|+
T Consensus        78 L~sG~is~~~a~~~~~~~~~~~l~l~~~l~~~~~~l~-~~~~~~~~~Y~~------~Kr~t~~~~~~lg~~~~~~~l~g~  150 (284)
T PRK12888         78 LVTGAVSVRTAWTGALVALAVFLGAAALLNPLCLALA-PLAVAPLVVYPY------AKRFTNFPHAILGLAQAVGPVGAW  150 (284)
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHHHHHH------hhcccchhhHHHHHHHHHHHHHHH
Confidence            9999999999999988888888888878887766555 345556778986      799999999999998887777776


Q ss_pred             HHHhhhhhhCCCCCChHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHcCCccchhhhccccHHHHHHHHHHHHHHHHHHH
Q 016056          256 FIHSQTYLLGKPFEVTGPFVFATAIMSIYAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKVLPLCVNMMLLGYGGAVVA  335 (396)
Q Consensus       256 ~~~~~~~l~g~~~~~~~~~~~~~~~~~l~~~~~~~~~d~~D~egD~~~G~~Tlpv~lG~~~a~~l~~~l~~~ay~~~~~~  335 (396)
                      .+..     | ..  +...+++.+...+|+.+++++|+++|+|+|++.|+||+|+++|+|++.++...+..+.++.....
T Consensus       151 ~a~~-----g-~~--~~~~~ll~~~~~~w~~~~~~i~a~~D~e~D~~~Gv~sl~v~~G~~~a~~~~~~~~~~~~~ll~~~  222 (284)
T PRK12888        151 IAVT-----G-TW--SWPAVLLGLAVGLWIGGFDLIYACQDAEVDRRIGVRSVPARFGVRAALWASRVAHVVTFALFVWF  222 (284)
T ss_pred             HHHc-----C-CC--CHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHCCCcCcchhhCchhHHHHHHHHHHHHHHHHHHH
Confidence            5431     2 22  32334445566789999999999999999999999999999999999887666666666555555


Q ss_pred             HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHccCCChhhHH-HHH-HH
Q 016056          336 GATSTLMISKLVTIIGHIILALMMWLRSRKVDLDNFDSQF-GFY-MF  380 (396)
Q Consensus       336 g~~~~~~~~~~~~~~g~~i~~~~l~~~~~~~d~~~~~~~~-~f~-~~  380 (396)
                      +.....++   .+.++..+.+..+.+|++.+|.+|++.|. .|+ .+
T Consensus       223 ~~~~~~~~---~y~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ff~~n  266 (284)
T PRK12888        223 GLAVGFGA---LWWIGLAITAGAFAYEHAIVSPTDLSRVNRAFFTAN  266 (284)
T ss_pred             HHHhCCcH---HHHHHHHHHHHHHHHHHHHcCccCHHHHHHHHHHHh
Confidence            55444443   44556667778899999999999877664 765 44

>PRK12886 ubiA prenyltransferase; Reviewed

Probab=100.00  E-value=4e-34  Score=278.40  Aligned_cols=265  Identities=17%  Similarity=0.149  Sum_probs=198.0

Q ss_pred             HHHHHHHHHHhhccchHHHHHHHHHHHHHhhcccCCCCchHHHHHHHHHHHHHHHHHHHHhhhhhhhchhhhhccCC--C
Q 016056           96 VKRKLNAISHVTRYYAQINIIVSVTSVCFLPVQSLSQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDVEIDKINKP--Y  173 (396)
Q Consensus        96 ~~~~l~~~~~l~Rp~~~~~~~l~~l~g~llA~~~~~~~~~~~l~~~ll~~l~~~l~~~a~~~iNd~~D~e~D~~n~p--~  173 (396)
                      +.+++++|+|++||++......+++.|.++|.++.++  +.   .+++++++.+++++++|++|||+|+|+|++|+|  +
T Consensus         4 ~~~~~~~y~~L~r~~~~~~~~~~~~~g~~lA~~~~~~--~~---~l~~~~l~~~l~~~a~~~~Nd~~D~~iD~~~~RT~~   78 (291)
T PRK12886          4 LLTKLKVFLEMIKFSHTLFALPFAGIGAVLAALGLPG--AS---QLDWILMAMVGARTAAMGFNRLIDAEIDARNPRTAG   78 (291)
T ss_pred             hHHHHHHHHHHhCccchHHHHHHHHHHHHHhccCCCC--HH---HHHHHHHHHHHHHHHHHHHHhHHhhccCCCCCCCCC
Confidence            3477999999999999999988889999988544332  21   134567889999999999999999999999985  8


Q ss_pred             CccccCccCHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHhheecCCCCccCccccCchhHHHHHHHHHHHHHH
Q 016056          174 LPLASGELSMGTGIAICAGSALLSLALAFLSGSPAVLCAVIAWGLTGAAYSVPLPFLRWKSHTFMAPFTLVILMGLILQI  253 (396)
Q Consensus       174 RPl~sG~ls~~~a~~~~~~~~~l~l~l~~~lg~~~l~l~l~~~~~l~~~Ys~~lpp~rlKr~~~~g~l~vg~~~g~~~~l  253 (396)
                      ||+++|++|++++..+.+.+.+.++.+++.+|+++..+++ ++.+..+.|+.      +||++.++++..|+.++.++..
T Consensus        79 RPL~sG~is~~~A~~~~~~~~~~~~~l~~~~~~~~~~l~~-~~~~~~~~Y~~------~Kr~t~~~~~~~g~~~~~~~l~  151 (291)
T PRK12886         79 RAIPAGLISKGSAILFIVLSSLLMLFAAWFLNPLCLYLSP-PALFFLLLYSY------CKRFTALAHVVLGFCLALAPLG  151 (291)
T ss_pred             CCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhh------hhccccccHHHHHHHHHHHHHH
Confidence            9999999999999988766666666666778887766653 45566789997      7999999999999988877767


Q ss_pred             HHHHHhhhhhhCCCCCChHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHcCCccchhhhccccHHHHHHHHHHHHHHHHH
Q 016056          254 PYFIHSQTYLLGKPFEVTGPFVFATAIMSIYAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKVLPLCVNMMLLGYGGAV  333 (396)
Q Consensus       254 g~~~~~~~~l~g~~~~~~~~~~~~~~~~~l~~~~~~~~~d~~D~egD~~~G~~Tlpv~lG~~~a~~l~~~l~~~ay~~~~  333 (396)
                      |+.+..     | ..  +...+++.+...+|+.+.+++++++|+|+|+++|+||+|+++|++++.++........+....
T Consensus       152 g~~a~~-----g-~~--~~~~~ll~~~~~lw~~~~~~~~a~~D~e~D~~aGi~slpv~~G~~~~~~~~~~~~~~~~~~~~  223 (291)
T PRK12886        152 AWIAIR-----G-TI--ELPAILLGLAVLFWVAGFDILYALQDLEFDRKEGLHSIPAKLGVNGSLWIARVFHLLMIGFLF  223 (291)
T ss_pred             HHHHHc-----C-CC--cHHHHHHHHHHHHHHHHHHHHHHhccHHhHHHcCCcCcchhcCchhHHHHHHHHHHHHHHHHH
Confidence            765431     2 22  223334445557889999999999999999999999999999999998876565555555544


Q ss_pred             HHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHccCCCh-hhHHH-HHHHhHH
Q 016056          334 VAGATSTLMISKLVTIIGHIILALMMWLRSRKVDLDNF-DSQFG-FYMFLWQ  383 (396)
Q Consensus       334 ~~g~~~~~~~~~~~~~~g~~i~~~~l~~~~~~~d~~~~-~~~~~-f~~~iw~  383 (396)
                      +.+.....+   ..+.++..+....+.++.+..+.+|+ +.+++ |..++|-
T Consensus       224 ~~~~~~~~~---~~y~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~F~~~~~~  272 (291)
T PRK12886        224 ALGISAGLG---PWFLAGLAVTGILLLYEHWLLRGGDLTRLDAAFFNMNGYI  272 (291)
T ss_pred             HHHHHhcCc---HHHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHhHHH
Confidence            444433333   34445555566666678888887774 46666 4444443

>PLN02809 4-hydroxybenzoate nonaprenyltransferase

Probab=100.00  E-value=3.5e-34  Score=278.15  Aligned_cols=263  Identities=18%  Similarity=0.177  Sum_probs=198.8

Q ss_pred             HHHHHHHHHhhccchHHHHHH---HHHHHHHhhc--ccCCCCchHHHHHHHHHHHHHHHHHHHHhhhhhhhchhhhhccC
Q 016056           97 KRKLNAISHVTRYYAQINIIV---SVTSVCFLPV--QSLSQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDVEIDKINK  171 (396)
Q Consensus        97 ~~~l~~~~~l~Rp~~~~~~~l---~~l~g~llA~--~~~~~~~~~~l~~~ll~~l~~~l~~~a~~~iNd~~D~e~D~~n~  171 (396)
                      ++++++|+|++|.+++.++.+   ++..|..++.  +..+  ++..   +++++++.+++++++|++||++|+|+|++|+
T Consensus         3 ~~~~~~y~~L~Rl~kp~~~~l~~~p~~~~~~l~a~~~~~~--~~~~---l~l~~~g~~~~~~a~~~~Nd~~Dr~iD~~~~   77 (289)
T PLN02809          3 PPSLRPYAKLARLDKPIGTWLLAWPCMWSIALAAPPGSLP--DLKM---LALFGCGALLLRGAGCTINDLLDRDIDKKVE   77 (289)
T ss_pred             chhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhccCCCC--cHHH---HHHHHHHHHHHHHHHHHHHhhHHhccccCCC
Confidence            367899999999999877754   4555666553  2222  2222   3456788899999999999999999999986


Q ss_pred             C--CCccccCccCHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHhheecCCCCccCccccCchhHHHHHHHHHH
Q 016056          172 P--YLPLASGELSMGTGIAICAGSALLSLALAFLSGSPAVLCAVIAWGLTGAAYSVPLPFLRWKSHTFMAPFTLVILMGL  249 (396)
Q Consensus       172 p--~RPl~sG~ls~~~a~~~~~~~~~l~l~l~~~lg~~~l~l~l~~~~~l~~~Ys~~lpp~rlKr~~~~g~l~vg~~~g~  249 (396)
                      |  +||+|+|++|+++++.+.+++.++++.+++.+|+..+.++ .++.++.++||.      +||++.++++..|+.++.
T Consensus        78 RT~~RPL~sG~is~~~A~~~~~~~~~~~~~~~~~l~~~~~~l~-~~~~~~~~~Y~~------~KR~t~~~~~~lg~~~~~  150 (289)
T PLN02809         78 RTKLRPIASGALTPFQGVGFLGAQLLLGLGILLQLNNYSRILG-ASSLLLVFTYPL------MKRFTFWPQAFLGLTFNW  150 (289)
T ss_pred             CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHHHHhH------HHhcCcchHHHHHHHHHH
Confidence            4  8999999999999999999999999999888887776665 456667889986      899999999999988887


Q ss_pred             HHHHHHHHHhhhhhhCCCCCChHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHcCCccchhhhccccHHHHHHHHHHHHH
Q 016056          250 ILQIPYFIHSQTYLLGKPFEVTGPFVFATAIMSIYAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKVLPLCVNMMLLGY  329 (396)
Q Consensus       250 ~~~lg~~~~~~~~l~g~~~~~~~~~~~~~~~~~l~~~~~~~~~d~~D~egD~~~G~~Tlpv~lG~~~a~~l~~~l~~~ay  329 (396)
                      ++.+|+.+.     .|. .+. ...+.+.....+|+.+.+++++++|+|+|++.|+||+|+++|++...++. .+..+++
T Consensus       151 ~~l~g~~av-----~g~-~~~-~~~~~l~~~~~~W~~~~d~~ya~~D~e~D~~~Gi~sl~v~~G~~~~~~i~-~~~~~~~  222 (289)
T PLN02809        151 GALLGWAAV-----KGS-LDP-AVVLPLYASGVCWTLVYDTIYAHQDKEDDLKVGVKSTALRFGDDTKLWLT-GFGAASI  222 (289)
T ss_pred             HHHHHHHHH-----hCC-CCh-HHHHHHHHHHHHHHHHHHHHHHHhchhhHHhCCCcccchhhcHHHHHHHH-HHHHHHH
Confidence            777776543     232 111 12222344556789999999999999999999999999999999665554 4555556


Q ss_pred             HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHccCCChhhHHHHH-HHhH
Q 016056          330 GGAVVAGATSTLMISKLVTIIGHIILALMMWLRSRKVDLDNFDSQFGFY-MFLW  382 (396)
Q Consensus       330 ~~~~~~g~~~~~~~~~~~~~~g~~i~~~~l~~~~~~~d~~~~~~~~~f~-~~iw  382 (396)
                      ......+.....+   ..+.+++.+.+..+++|.+.+|.+|+++|.++| .+.|
T Consensus       223 ~~l~~~g~~~~~~---~~~~~~~~~~~~~l~~~~~~v~~~~~~~~~~~F~~n~~  273 (289)
T PLN02809        223 GGLALSGYNAGLG---WPYYAGLAAAAGHLAWQIQTVDLSSRADCNRKFVSNKW  273 (289)
T ss_pred             HHHHHHHHHhcCc---HHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhCCH
Confidence            5555555544333   234457777788899999999999988776654 4433

>PLN00012 chlorophyll synthetase; Provisional

Probab=100.00  E-value=1.2e-33  Score=282.56  Aligned_cols=220  Identities=23%  Similarity=0.269  Sum_probs=165.7

Q ss_pred             HHHHHHHHHHHhhccchHHHHHHHHHHHHHhhcccCCCCchH---HHHHHHHHHHHHHHHHHHHhhhhhhhchhhhhccC
Q 016056           95 VVKRKLNAISHVTRYYAQINIIVSVTSVCFLPVQSLSQVTPA---FLLGVLKAVVAQIFMNISLCSLNQICDVEIDKINK  171 (396)
Q Consensus        95 ~~~~~l~~~~~l~Rp~~~~~~~l~~l~g~llA~~~~~~~~~~---~l~~~ll~~l~~~l~~~a~~~iNd~~D~e~D~~n~  171 (396)
                      ..++++++|++++||+++...++++++|.... +   .+++.   ++..++++++++.++++++|++|||+|+|+|++|+
T Consensus        80 ~~~~~~k~~l~L~RP~t~~~~~~~v~~G~~~~-g---~~~~~~~~~~~~ll~~ll~~~L~~~~an~iNDy~D~~iD~~~~  155 (375)
T PLN00012         80 QETDIWKIRLQLTKPVTWPPLVWGVLCGAAAS-G---NFHWTLEDVAKSIVCMLMSGPFLTGYTQTINDWYDREIDAINE  155 (375)
T ss_pred             cchHHHHHHHHHhCHHHHHHHHHHHHHHHHHc-C---CCCchhhhHHHHHHHHHHHHHHHHHHHHHHHCeecHhhhccCC
Confidence            35578999999999999999999999998843 2   22222   11123556778889999999999999999999999


Q ss_pred             CCCccccCccCHHHHHHHHHHHHHHHHHHHHHh-------cHHHHHHHHHHHHHHhheecCCCCccCccccCchhHHHHH
Q 016056          172 PYLPLASGELSMGTGIAICAGSALLSLALAFLS-------GSPAVLCAVIAWGLTGAAYSVPLPFLRWKSHTFMAPFTLV  244 (396)
Q Consensus       172 p~RPl~sG~ls~~~a~~~~~~~~~l~l~l~~~l-------g~~~l~l~l~~~~~l~~~Ys~~lpp~rlKr~~~~g~l~vg  244 (396)
                      |+||+++|++++++++.++.++.++++.+++.+       +++.+.++ +++.+++++||.  ||+++||++++|++.+|
T Consensus       156 ~~Rpi~sG~Is~~~al~~~~~l~~~~l~l~~~L~~~~~~~~~~~~~l~-l~gi~l~~~YS~--pPl~lKr~~~~G~v~lG  232 (375)
T PLN00012        156 PYRPIPSGAISENEVITQIWVLLLGGLGLAYTLDVWAGHDFPIVFYLA-LGGSLLSYIYSA--PPLKLKQNGWIGNYALG  232 (375)
T ss_pred             CCCCcCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHH-HHHHHHhhhhcC--CchhhhHhccHhHHHHH
Confidence            999999999999999997766666666555443       33333333 456778999999  99999999999999888


Q ss_pred             HHHHHHHHHHHHHHhhhhhhCCCCCChHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHcCCccchhhhccccHHHHHHHH
Q 016056          245 ILMGLILQIPYFIHSQTYLLGKPFEVTGPFVFATAIMSIYAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKVLPLCVNM  324 (396)
Q Consensus       245 ~~~g~~~~lg~~~~~~~~l~g~~~~~~~~~~~~~~~~~l~~~~~~~~~d~~D~egD~~~G~~Tlpv~lG~~~a~~l~~~l  324 (396)
                      ..++.   ++++..  ..+.|.   ++...+++.++.++|+.++++.||++|+|+|++.|++|+|+++|++++++++..+
T Consensus       233 ~~~~~---lp~~~g--~a~~g~---~s~~~illal~~~l~~lai~ivnd~~Die~Dr~aG~~TLpV~~G~~~a~~l~~~~  304 (375)
T PLN00012        233 ASYIS---LPWWAG--QALFGT---LTPDVVVLTLLYSIAGLGIAIVNDFKSIEGDRALGLQSLPVAFGVETAKWICVGS  304 (375)
T ss_pred             HHHHH---HHHHHH--HHHcCC---CCHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHcCCcccceeechHHHHHHHHHH
Confidence            76652   222221  122232   2333444445566789999999999999999999999999999999999887654


Q ss_pred             HHHHH
Q 016056          325 MLLGY  329 (396)
Q Consensus       325 ~~~ay  329 (396)
                      +.+.+
T Consensus       305 l~l~~  309 (375)
T PLN00012        305 IDITQ  309 (375)
T ss_pred             HHHHH
Confidence            44443

>PRK12884 ubiA prenyltransferase; Reviewed

Probab=100.00  E-value=5.8e-34  Score=275.92  Aligned_cols=261  Identities=19%  Similarity=0.260  Sum_probs=195.5

Q ss_pred             HHHHHHHHhhccchHHHHHHHHHHHHHhhcccCCCCchHHHHHHHHHHHHHHHHHHHHhhhhhhhchhhhhccCCCCccc
Q 016056           98 RKLNAISHVTRYYAQINIIVSVTSVCFLPVQSLSQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDVEIDKINKPYLPLA  177 (396)
Q Consensus        98 ~~l~~~~~l~Rp~~~~~~~l~~l~g~llA~~~~~~~~~~~l~~~ll~~l~~~l~~~a~~~iNd~~D~e~D~~n~p~RPl~  177 (396)
                      +++++|+|++||+++..+.++++.|.++|.+..+  .+    .+++++++.+++++++|++|||+|+|+|++|+|+||++
T Consensus         2 ~~l~~~~~l~R~~~~~~~~~~~~~g~~la~~~~~--~~----~~~l~~l~~~l~~~a~~~~Nd~~D~~~D~~~r~~Rpl~   75 (279)
T PRK12884          2 TKMKAYLELLRPEHGLMAGIAVVLGAIIALGGLP--LD----EALLGFLTAFFASGSANALNDYFDYEVDRINRPDRPIP   75 (279)
T ss_pred             hHHHHHHHHhhhhHHHHHHHHHHHHHHHHCCCCc--hH----HHHHHHHHHHHHHHHHHHHHhhhhHhhhhccCCCCCCC
Confidence            4789999999999999999999999988854322  11    24556788999999999999999999999999999999


Q ss_pred             cCccCHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHhheecCCCCccCccccCchhHHHHHHHHHHHHHHHHHH
Q 016056          178 SGELSMGTGIAICAGSALLSLALAFLSGSPAVLCAVIAWGLTGAAYSVPLPFLRWKSHTFMAPFTLVILMGLILQIPYFI  257 (396)
Q Consensus       178 sG~ls~~~a~~~~~~~~~l~l~l~~~lg~~~l~l~l~~~~~l~~~Ys~~lpp~rlKr~~~~g~l~vg~~~g~~~~lg~~~  257 (396)
                      +|++|+++++.+++++.++++.++..+|+..+.++ +++.+.++.||.     ++||+++++++++++.+|.++..|+..
T Consensus        76 ~G~is~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~Ys~-----~lK~~~~~~~~~~~~~~~~~~~~g~~~  149 (279)
T PRK12884         76 SGRISRREALLLAILLFILGLIAAYLISPLAFLVV-ILVSVLGILYNW-----KLKEYGLIGNLYVAFLTGMTFIFGGIA  149 (279)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHHHHHH-----hhccccchhHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999998888887766554 456778899997     479999889999999888666666543


Q ss_pred             HhhhhhhCCCCCChHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHcCCccchhhhccccHHHHHHHHHHHHHHHHHHHHH
Q 016056          258 HSQTYLLGKPFEVTGPFVFATAIMSIYAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKVLPLCVNMMLLGYGGAVVAGA  337 (396)
Q Consensus       258 ~~~~~l~g~~~~~~~~~~~~~~~~~l~~~~~~~~~d~~D~egD~~~G~~Tlpv~lG~~~a~~l~~~l~~~ay~~~~~~g~  337 (396)
                      .      +..   +...+++.....+|+.+.++.+|++|+|+|+++|+||+|+++|++++.++...+..+.++...+...
T Consensus       150 ~------~~~---~~~~~~l~~~~~~~~~~~~~~~~~~D~e~D~~~G~~Tl~v~~G~~~~~~~~~~~~~~~~~~~~~~~~  220 (279)
T PRK12884        150 V------GEL---NEAVILLAAMAFLMTLGREIMKDIEDVEGDRLRGARTLAILYGEKIAGRIAAALFILAVLLSPLPYL  220 (279)
T ss_pred             h------CCC---chHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHcCCeeechHhcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            2      221   1123333345567888899999999999999999999999999999998876666666654433332


Q ss_pred             HhhhhhHHHHHHHHHHHHHHHHHHHH-HHccCCChhhHHHHHHHhH
Q 016056          338 TSTLMISKLVTIIGHIILALMMWLRS-RKVDLDNFDSQFGFYMFLW  382 (396)
Q Consensus       338 ~~~~~~~~~~~~~g~~i~~~~l~~~~-~~~d~~~~~~~~~f~~~iw  382 (396)
                      ....++   .+.+...+....+.++. +..+.+|++.++++..+.+
T Consensus       221 ~~~~~~---~y~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  263 (279)
T PRK12884        221 FGIFNI---LYLAPVLVADLIFLYSAYSLLRSQDRETIRKVRKITL  263 (279)
T ss_pred             HHHhhH---HHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Confidence            222232   33344444444555553 5556666666666544433

>PRK07566 bacteriochlorophyll/chlorophyll a synthase; Reviewed

Probab=100.00  E-value=4.3e-34  Score=281.13  Aligned_cols=225  Identities=22%  Similarity=0.215  Sum_probs=175.4

Q ss_pred             HHHHHHHHHHhhccchHHHHHHHHHHHHHhhcccCCCCchH-HHHHHHHHHHHHHHHHHHHhhhhhhhchhhhhccCCCC
Q 016056           96 VKRKLNAISHVTRYYAQINIIVSVTSVCFLPVQSLSQVTPA-FLLGVLKAVVAQIFMNISLCSLNQICDVEIDKINKPYL  174 (396)
Q Consensus        96 ~~~~l~~~~~l~Rp~~~~~~~l~~l~g~llA~~~~~~~~~~-~l~~~ll~~l~~~l~~~a~~~iNd~~D~e~D~~n~p~R  174 (396)
                      .++++++|++++||+++..++++++.|++.+..  .++... .+..++.++++..++++++|++|||+|+|+|++|+|+|
T Consensus        23 ~~~~~~~~~~l~RP~~~~~~~~~~~~g~~~~~~--~~~~~~~~~~~~l~~~l~~~l~~~~~~~~Nd~~D~~~D~~~~~~R  100 (314)
T PRK07566         23 TTSIWKARLQLMKPITWFPPMWAFLCGAVSSGA--FGWTLENVLKLLAGMLLAGPLLCGTSQTLNDYFDREVDAINEPYR  100 (314)
T ss_pred             cchHHHHHHHHhCCcchHHHHHHHHHHHHHcCC--CCcchhHHHHHHHHHHHHHHHHHHHHHHHhhhhccCccccCCCCC
Confidence            347789999999999999999998888876532  122211 11112345677788999999999999999999999999


Q ss_pred             ccccCccCHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHhheecCCCCccCccccCchhHHHHHHHHH-HHHHH
Q 016056          175 PLASGELSMGTGIAICAGSALLSLALAFLSGSPAVLCAVIAWGLTGAAYSVPLPFLRWKSHTFMAPFTLVILMG-LILQI  253 (396)
Q Consensus       175 Pl~sG~ls~~~a~~~~~~~~~l~l~l~~~lg~~~l~l~l~~~~~l~~~Ys~~lpp~rlKr~~~~g~l~vg~~~g-~~~~l  253 (396)
                      |+++|++|+++++.+++++.++++.+++.+|++...++ +++++++++||.  ||+++||+++++|+.+|+.+| .++..
T Consensus       101 pl~sG~is~~~a~~~~~~l~~~~~~l~~~l~~~~~~l~-l~~~~~~~~Yt~--gP~~lK~~~~~g~i~vg~~~g~~~~~~  177 (314)
T PRK07566        101 PIPSGAISLRWVLYLIAVLTVLGLAVAYLLGPWVFLAA-LLGLFLAWIYSA--PPLRLKQNGWLGNYAVGLSYEGLPWWA  177 (314)
T ss_pred             CCCCceeCHHHHHHHHHHHHHHHHHHHHHHChHHHHHH-HHHHHHHHHhcC--CccccccccchhhHHHHHHHHHHHHHH
Confidence            99999999999999999999999988888887766554 457777899999  899999999889999998876 33333


Q ss_pred             HHHHHhhhhhhCCCCCChHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHcCCccchhhhccccHHHHHHHHHHHHHHHH
Q 016056          254 PYFIHSQTYLLGKPFEVTGPFVFATAIMSIYAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKVLPLCVNMMLLGYGGA  332 (396)
Q Consensus       254 g~~~~~~~~l~g~~~~~~~~~~~~~~~~~l~~~~~~~~~d~~D~egD~~~G~~Tlpv~lG~~~a~~l~~~l~~~ay~~~  332 (396)
                      ++..      .+. ...+...++...+.++++.+++++||++|+|+|+++|+||+|+++|+++++++...++.++|+..
T Consensus       178 g~~~------~~~-~~~~~~~~l~~~~~~l~~~~~~~~~d~~D~e~D~~aG~~Tlpv~~G~~~a~~l~~~l~~~~~~~~  249 (314)
T PRK07566        178 GAAA------FGA-GLPSWPIVILALLYSLGAHGIMTLNDFKSVEGDRQLGLRSLPVVFGEKNAARIACVVIDLFQLAV  249 (314)
T ss_pred             HHHH------hcc-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHcCCcccceeEcHHHHHHHHHHHHHHHHHHH
Confidence            3322      121 11233334444455677888999999999999999999999999999999988877777776653

>TIGR01476 chlor_syn_BchG bacteriochlorophyll/chlorophyll synthetase

Probab=100.00  E-value=3.2e-34  Score=278.32  Aligned_cols=220  Identities=19%  Similarity=0.156  Sum_probs=172.3

Q ss_pred             HHHHHhhccchHHHHHHHHHHHHHhhcccCCC-CchHHHHHHHHHHHHHHHHHHHHhhhhhhhchhhhhccCCCCccccC
Q 016056          101 NAISHVTRYYAQINIIVSVTSVCFLPVQSLSQ-VTPAFLLGVLKAVVAQIFMNISLCSLNQICDVEIDKINKPYLPLASG  179 (396)
Q Consensus       101 ~~~~~l~Rp~~~~~~~l~~l~g~llA~~~~~~-~~~~~l~~~ll~~l~~~l~~~a~~~iNd~~D~e~D~~n~p~RPl~sG  179 (396)
                      |+|+|++||+++..++++++.|.+++...... +++..  .++.+++++.+.++++|++|||+|+|+|++|+|+||+++|
T Consensus         1 ~~~~~l~rp~t~~~~~~~~~~G~~~a~~~~~~~~~~~~--~ll~~~~~~~l~~~~~n~~Nd~~D~~~D~~~~~~Rpi~~G   78 (283)
T TIGR01476         1 RAHIELMKPVTWIPPIWACFCGALASGYERGFPEHWWL--MLLGMLMAGPLGTGFSQSINDYFDRDVDAINEPQRPIPSG   78 (283)
T ss_pred             CceeEecCCceehhHHHHHHHHHHhccCCCCcchhHHH--HHHHHHHHHHHHHHHHHHHHhHhhhCcccCCCCCCCCCCC
Confidence            46899999999999999999999887322122 33321  2344667889999999999999999999999999999999


Q ss_pred             ccCHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHhheecCCCCccCccccCchhHHHHHHHHHH-HHHHHHHHH
Q 016056          180 ELSMGTGIAICAGSALLSLALAFLSGSPAVLCAVIAWGLTGAAYSVPLPFLRWKSHTFMAPFTLVILMGL-ILQIPYFIH  258 (396)
Q Consensus       180 ~ls~~~a~~~~~~~~~l~l~l~~~lg~~~l~l~l~~~~~l~~~Ys~~lpp~rlKr~~~~g~l~vg~~~g~-~~~lg~~~~  258 (396)
                      ++|+++++.+++++.++++.+++.++.+...+..+++.+.+++||.  ||+++||+++++++.+++.++. +...++.  
T Consensus        79 ~is~~~a~~~~~~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~~Ys~--~p~~lk~~~~~g~~~vg~~~~~~~~~~~~~--  154 (283)
T TIGR01476        79 IISLREVRWNWLVLTVAGLLVALVLGNWLIVLFTVVGIVLAVIYSM--PPIKLKRNGWLGPPAVGLSYEGLPWMAGHA--  154 (283)
T ss_pred             CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhheecC--chhhhccCCCccHHHHHHHHHHHHHHHHHH--
Confidence            9999999999999999999888877766522323457778999999  9999999998999999887662 2222221  


Q ss_pred             hhhhhhCCCCCChHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHcCCccchhhhccccHHHHHHHHHHHHHHHHH
Q 016056          259 SQTYLLGKPFEVTGPFVFATAIMSIYAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKVLPLCVNMMLLGYGGAV  333 (396)
Q Consensus       259 ~~~~l~g~~~~~~~~~~~~~~~~~l~~~~~~~~~d~~D~egD~~~G~~Tlpv~lG~~~a~~l~~~l~~~ay~~~~  333 (396)
                          ..+ .  .+...++.....++++.+++++||++|+|+|+++|+||+|+++|+|++++++..++.++|+..+
T Consensus       155 ----~~~-~--~~~~~~~~~~~~~l~~~~i~~~nd~~D~~~D~~~G~~Tl~v~lG~~~a~~l~~~l~~~~~~~~~  222 (283)
T TIGR01476       155 ----IFA-P--LTWQSVVVALIYSLGAHGIMTLNDFKSVEGDRQLGLRSLPVMIGVKRAAIVAVTTINVFQAMVI  222 (283)
T ss_pred             ----HhC-C--CCHHHHHHHHHHHHHHHHHHHHHhccchhhHHHcCCcCcceEEcHHHHHHHHHHHHHHHHHHHH
Confidence                122 1  2333333344556788889999999999999999999999999999999998777777775544

This model describes a subfamily of a large family of polyprenyltransferases (pfam01040) that also includes 4-hydroxybenzoate octaprenyltransferase and protoheme IX farnesyltransferase (heme O synthase). Members of this family are found exclusively in photosynthetic organisms, including a single copy in Arabidopsis thaliana.

>PRK09573 (S)-2,3-di-O-geranylgeranylglyceryl phosphate synthase; Reviewed

Probab=100.00  E-value=9.2e-34  Score=274.64  Aligned_cols=255  Identities=18%  Similarity=0.172  Sum_probs=188.2

Q ss_pred             HHHHHHHhhccchHHHHHHHHHHHHHhhcccCCCCchHHHHHHHHHHHHHHHHHHHHhhhhhhhchhhhhccCCCCcccc
Q 016056           99 KLNAISHVTRYYAQINIIVSVTSVCFLPVQSLSQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDVEIDKINKPYLPLAS  178 (396)
Q Consensus        99 ~l~~~~~l~Rp~~~~~~~l~~l~g~llA~~~~~~~~~~~l~~~ll~~l~~~l~~~a~~~iNd~~D~e~D~~n~p~RPl~s  178 (396)
                      ++++|+|++||+++..++++++.|.+++.+...  ++.   .+++++++.+++++++|++|||+|+|+|++|+|+||+++
T Consensus         2 ~~~~~~~l~Rp~~~~~~~~~~~~g~~la~~~~~--~~~---~~~l~~l~~~l~~~~~~~iNd~~D~~iD~~~~~~Rpl~s   76 (279)
T PRK09573          2 SIKAYFELIRPKNCIGASIGAIIGYLIASNFKI--DLK---GIILAALVVFLVCAGGNVINDIYDIEIDKINKPERPIPS   76 (279)
T ss_pred             CHHHHHHHHhHhHHHHHHHHHHHHHHHHccCCc--chH---HHHHHHHHHHHHHHHHHHHHhhcccccccccCCCCCcCC
Confidence            478999999999999999999999988854322  222   145577889999999999999999999999999999999


Q ss_pred             CccCHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHhheecCCCCccCccccCchhHHHHHHHHHHHHHHHHHHH
Q 016056          179 GELSMGTGIAICAGSALLSLALAFLSGSPAVLCAVIAWGLTGAAYSVPLPFLRWKSHTFMAPFTLVILMGLILQIPYFIH  258 (396)
Q Consensus       179 G~ls~~~a~~~~~~~~~l~l~l~~~lg~~~l~l~l~~~~~l~~~Ys~~lpp~rlKr~~~~g~l~vg~~~g~~~~lg~~~~  258 (396)
                      |++|+++++.+++++.++++.+++.+|+....++ +++.++.++||.     ++||++.++|+++|..+|..+..|+...
T Consensus        77 G~is~~~a~~~~~~l~~~~~~l~~~l~~~~~~l~-~~~~~~~~~Ys~-----~lKr~~~~~~~~vg~~~G~~~~~g~~~~  150 (279)
T PRK09573         77 GRISLKEAKIFSITLFIVGLILSIFINIYAFLIA-LLNSILLYLYAK-----DLKKTGLIGNLIVAYLTGLSFIFGGLAV  150 (279)
T ss_pred             CccCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHHHHHH-----HHhcCCcHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999998888888776655 356667889996     4799998899999999986666665442


Q ss_pred             hhhhhhCCCCCChHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHcCCccchhhhccccHHHHHHHHHHHHHHHHHHHHHH
Q 016056          259 SQTYLLGKPFEVTGPFVFATAIMSIYAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKVLPLCVNMMLLGYGGAVVAGAT  338 (396)
Q Consensus       259 ~~~~l~g~~~~~~~~~~~~~~~~~l~~~~~~~~~d~~D~egD~~~G~~Tlpv~lG~~~a~~l~~~l~~~ay~~~~~~g~~  338 (396)
                            +.  . . ..+++.....+|+.+++++||++|+|+|+++|+||+|+++|+|++.++......+......+ ...
T Consensus       151 ------~~--~-~-~~~~l~~~~f~~~~~~~~~~~~~D~~~D~~~G~~tlpv~~G~~~a~~~~~~~~~~~~~~~~~-~~~  219 (279)
T PRK09573        151 ------FN--V-L-RIIILFLCAFFSTWSREIVKDIEDIEGDLKENVITLPIKYGIKKSWYIAKILLILAIVLSPL-PYF  219 (279)
T ss_pred             ------cc--c-h-HHHHHHHHHHHHHHHHHHHhhhhhhhhHHHCCCccccHHhhHHHHHHHHHHHHHHHHHHHHH-HHH
Confidence                  21  1 1 22233344457888899999999999999999999999999999988765544443333222 111


Q ss_pred             hhhhhHHHHHHHHHHHHHHHHHHH-HHHccCCChhhHHHH
Q 016056          339 STLMISKLVTIIGHIILALMMWLR-SRKVDLDNFDSQFGF  377 (396)
Q Consensus       339 ~~~~~~~~~~~~g~~i~~~~l~~~-~~~~d~~~~~~~~~f  377 (396)
                      .  +..+..|.++..+....+.++ .+..+.++++.++..
T Consensus       220 ~--~~~~~~y~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  257 (279)
T PRK09573        220 L--GIFGIYYLIVVIICDILFIIAMLILLKNPSIEGASKA  257 (279)
T ss_pred             H--HHHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHHHHHH
Confidence            1  112234444444444555555 444455556554443

>PRK12878 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed

Probab=100.00  E-value=1.6e-33  Score=276.64  Aligned_cols=264  Identities=19%  Similarity=0.133  Sum_probs=197.7

Q ss_pred             HHHHHHHHHHHHhh---ccchHHHHHHHHHHHHHhhcccC---CCCchHHHHHHHHHHHHHHHHHHHHhhhhhhhchhhh
Q 016056           94 EVVKRKLNAISHVT---RYYAQINIIVSVTSVCFLPVQSL---SQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDVEID  167 (396)
Q Consensus        94 ~~~~~~l~~~~~l~---Rp~~~~~~~l~~l~g~llA~~~~---~~~~~~~l~~~ll~~l~~~l~~~a~~~iNd~~D~e~D  167 (396)
                      +.++.++++|+|++   ||+......++++.|.++|....   ...++.   .+++++++.+++++++|++|||+|+|+|
T Consensus        24 ~~~~~~~~~y~~L~R~~kP~~~~l~~~p~~~G~~lA~~~~~~~~~~~~~---~~~l~~l~~~l~~~a~~~~Nd~~Dr~iD  100 (314)
T PRK12878         24 RRLPPWLRPYAQLARWDRPIGWWLLLWPCWWSAALAAGAAADLGLLLLW---HLFLFFVGAIAMRGAGCTYNDIVDRDID  100 (314)
T ss_pred             hhcchhHHHHHHHHccccchhhHHHHHHHHHHHHHhcccccCCCCCCHH---HHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            34778899999999   88888888999999999985421   123322   2456778999999999999999999999


Q ss_pred             hccCC--CCccccCccCHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHhheecCCCCccCccccCchhHHHHHH
Q 016056          168 KINKP--YLPLASGELSMGTGIAICAGSALLSLALAFLSGSPAVLCAVIAWGLTGAAYSVPLPFLRWKSHTFMAPFTLVI  245 (396)
Q Consensus       168 ~~n~p--~RPl~sG~ls~~~a~~~~~~~~~l~l~l~~~lg~~~l~l~l~~~~~l~~~Ys~~lpp~rlKr~~~~g~l~vg~  245 (396)
                      ++|+|  +||+++|++|+++++.+++++.++|+.+.+..|++.+.++ ++++++.+.||.      +||++.+++...|+
T Consensus       101 ~~~~Rt~~RPl~sG~is~~~a~~~~~~~~~~g~~l~~~~~~~~~~l~-~~~~~~~~~Y~~------~KR~t~~~~~~~Gl  173 (314)
T PRK12878        101 AKVARTRSRPLPSGQVSRKQAKVFMVLQALVGLAVLLQFNWFAIALG-IASLAIVAAYPF------MKRITWWPQFFLGL  173 (314)
T ss_pred             cCCCCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHHHHHH------HHhcCCcchHHHHH
Confidence            98775  8999999999999999999999999988888887766555 456777889986      89998888888888


Q ss_pred             HHHHHHHHHHHHHhhhhhhCCCCCChHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHcCCccchhhhccccHHHHHHHHH
Q 016056          246 LMGLILQIPYFIHSQTYLLGKPFEVTGPFVFATAIMSIYAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKVLPLCVNMM  325 (396)
Q Consensus       246 ~~g~~~~lg~~~~~~~~l~g~~~~~~~~~~~~~~~~~l~~~~~~~~~d~~D~egD~~~G~~Tlpv~lG~~~a~~l~~~l~  325 (396)
                      .++.++..|+++..     | ..  +...+++.....+|+...+.+++++|+|+|+++|+||+|+++|+++++++... +
T Consensus       174 ~~~~~~l~g~~a~~-----g-~~--~~~~~~l~~~~~~w~~~~~~~~a~~D~e~D~~aGi~slpv~~G~~~~~~~~~~-~  244 (314)
T PRK12878        174 AFSWGALMGWAAHF-----G-SL--SLAAVLLYAGSIAWTIGYDTIYAHQDKEDDALIGVKSTARLFGDHTKTWLVLF-Y  244 (314)
T ss_pred             HHHHHHHHHHHHHh-----C-CC--chHHHHHHHHHHHHHHHHHHHHHhhhHhhHHHcCCcccchHhchhhHHHHHHH-H
Confidence            77766667765432     3 22  22333334445678999999999999999999999999999999999887643 3


Q ss_pred             HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHccCCChhhHHHHHH
Q 016056          326 LLGYGGAVVAGATSTLMISKLVTIIGHIILALMMWLRSRKVDLDNFDSQFGFYM  379 (396)
Q Consensus       326 ~~ay~~~~~~g~~~~~~~~~~~~~~g~~i~~~~l~~~~~~~d~~~~~~~~~f~~  379 (396)
                      .+......+.+.....++   .+.++.......+.++..++|.++++.|+++|.
T Consensus       245 ~~~~~~~~l~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~F~  295 (314)
T PRK12878        245 GLAVLLMGLAFWLAGVPL---LALLGLLAAAAHLAWQIARLDIDDPDQCLRLFK  295 (314)
T ss_pred             HHHHHHHHHHHHHhcCcH---HHHHHHHHHHHHHHHHHHHcccCChHHHHHHHH
Confidence            333333233333333333   233444445556788888888888777776654

>PRK12847 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed

Probab=100.00  E-value=2.5e-33  Score=272.36  Aligned_cols=266  Identities=15%  Similarity=0.148  Sum_probs=195.5

Q ss_pred             HHHHHHHHHHhhccchHHH---HHHHHHHHHHhhcccCCCCchHHHHHHHHHHHHHHHHHHHHhhhhhhhchhhhhccCC
Q 016056           96 VKRKLNAISHVTRYYAQIN---IIVSVTSVCFLPVQSLSQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDVEIDKINKP  172 (396)
Q Consensus        96 ~~~~l~~~~~l~Rp~~~~~---~~l~~l~g~llA~~~~~~~~~~~l~~~ll~~l~~~l~~~a~~~iNd~~D~e~D~~n~p  172 (396)
                      .++++++|+|++||+++..   ..++++.|.++|.... ..++.   ..++++++++++++++|++|||+|+|+|++|+|
T Consensus         3 ~~~~~~~~~~l~R~~kp~~~~l~~~~~~~g~~la~~~~-~~~~~---~~ll~~l~~~l~~~a~~~~Nd~~D~~iD~~~~R   78 (285)
T PRK12847          3 ILMKFLAYFKLMRLHKPIGILLVFFPTLFGLLLASHSL-LPDIS---LLVLFIIGSVLMRSAGCIINDIFDRKIDKHVAR   78 (285)
T ss_pred             hHHHHHHHHHHHCcchHHHHHHHHHHHHHHHHHHhCcc-CCcHH---HHHHHHHHHHHHHHHHHHHHhHHHhhhccCCCc
Confidence            3467999999999998775   4567888988885432 12332   245577888999999999999999999998764


Q ss_pred             --CCccccCccCHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHhheecCCCCccCccccCchhHHHHHHHHHHH
Q 016056          173 --YLPLASGELSMGTGIAICAGSALLSLALAFLSGSPAVLCAVIAWGLTGAAYSVPLPFLRWKSHTFMAPFTLVILMGLI  250 (396)
Q Consensus       173 --~RPl~sG~ls~~~a~~~~~~~~~l~l~l~~~lg~~~l~l~l~~~~~l~~~Ys~~lpp~rlKr~~~~g~l~vg~~~g~~  250 (396)
                        +||+++|++|+++++.+++++.++++.+++.+|+..+.++ +++.+.++.||.      .||++.+++++.|+.++.+
T Consensus        79 t~~Rpl~sG~is~~~a~~~~~~l~~~~~~l~~~~~~~~~~~~-~~~~~~~~~Y~~------~Kr~~~~~~~~~g~~~~~~  151 (285)
T PRK12847         79 TKNRPLASGALSVKQALILLFILLLIALVILLLLNKTTIYLS-FIAVILIVLYPL------MKRFFYWPQLFLGFTFNMG  151 (285)
T ss_pred             ccCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHHhccc------cccCCcccHHHHHHHHHHH
Confidence              8999999999999999999999999988888887776665 456677889986      7999989999999888866


Q ss_pred             HHHHHHHHhhhhhhCCCCCChHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHcCCccchhhhccccHHHHHHHHHHHHHH
Q 016056          251 LQIPYFIHSQTYLLGKPFEVTGPFVFATAIMSIYAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKVLPLCVNMMLLGYG  330 (396)
Q Consensus       251 ~~lg~~~~~~~~l~g~~~~~~~~~~~~~~~~~l~~~~~~~~~d~~D~egD~~~G~~Tlpv~lG~~~a~~l~~~l~~~ay~  330 (396)
                      +..++.+.      ++..  +...+++.....+|+.+.+++++++|+|+|+++|+||+|+++|++++.++........+.
T Consensus       152 ~l~~~~a~------~g~~--~~~~~~l~~~~~~w~~~~~~~~a~~D~e~D~~~G~~tl~v~~G~~~a~~~~~~~~~~~~~  223 (285)
T PRK12847        152 ILMAFAAV------QNQL--DIEAILLYIGCIFWTIGYDTIYAYQDKKDDLKIGVKSTAIYFGNKTRKYILRLYIISLIL  223 (285)
T ss_pred             HHHHHHHH------cCCC--cHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHcCCchhHHHhccccHHHHHHHHHHHHHH
Confidence            66665442      2222  333344445567899999999999999999999999999999999998877655544443


Q ss_pred             HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHccCCChhhHHHH-HHHhHHH
Q 016056          331 GAVVAGATSTLMISKLVTIIGHIILALMMWLRSRKVDLDNFDSQFGF-YMFLWQL  384 (396)
Q Consensus       331 ~~~~~g~~~~~~~~~~~~~~g~~i~~~~l~~~~~~~d~~~~~~~~~f-~~~iw~l  384 (396)
                      ..+ .+......  ...+ .+.++...+++++...+|.+|++.++++ ..+.+.+
T Consensus       224 ~~~-~~~~~~~~--~~~y-~~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~  274 (285)
T PRK12847        224 WLI-LGIISSLH--NIFY-LAILAAAGIFYYQYKLLDFDNPANCMYAFKANHYVG  274 (285)
T ss_pred             HHH-HHHHhcCc--HHHH-HHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHhHHHH
Confidence            322 22222221  1222 2333445577888888888887665554 3334433

>PRK12848 ubiA 4-hydroxybenzoate octaprenyltransferase; Reviewed

Probab=100.00  E-value=1.5e-33  Score=273.61  Aligned_cols=264  Identities=16%  Similarity=0.184  Sum_probs=194.9

Q ss_pred             HHHHHHHHHhhccchHHHHH---HHHHHHHHhhcccCCCCchHHHHHHHHHHHHHHHHHHHHhhhhhhhchhhhhccCC-
Q 016056           97 KRKLNAISHVTRYYAQINII---VSVTSVCFLPVQSLSQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDVEIDKINKP-  172 (396)
Q Consensus        97 ~~~l~~~~~l~Rp~~~~~~~---l~~l~g~llA~~~~~~~~~~~l~~~ll~~l~~~l~~~a~~~iNd~~D~e~D~~n~p-  172 (396)
                      ++++++|+|++|++++....   ++++.|..+|.+..++  +..   +++++++.+++++++|++|||+|+|+|++|+| 
T Consensus         2 ~~~~~~y~~L~R~~kp~~~~l~~~p~~~g~~la~~~~~~--~~~---~~l~~~g~~l~~~a~~~~Nd~~D~~iD~~~~Rt   76 (282)
T PRK12848          2 QNRLLAYARLMRLDKPIGTLLLLWPTLWALWLAADGIPD--LWV---LVVFVLGVFLMRAAGCVINDYADRDFDGHVKRT   76 (282)
T ss_pred             chhHHHHHHHHCccchHHHHHHHHHHHHHHHHHcCCCCC--HHH---HHHHHHHHHHHHHHHHHHHhhHHhccCCCCCCC
Confidence            35789999999987765554   4677888887543322  221   34466788899999999999999999998764 


Q ss_pred             -CCccccCccCHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHhheecCCCCccCccccCchhHHHHHHHHHHHH
Q 016056          173 -YLPLASGELSMGTGIAICAGSALLSLALAFLSGSPAVLCAVIAWGLTGAAYSVPLPFLRWKSHTFMAPFTLVILMGLIL  251 (396)
Q Consensus       173 -~RPl~sG~ls~~~a~~~~~~~~~l~l~l~~~lg~~~l~l~l~~~~~l~~~Ys~~lpp~rlKr~~~~g~l~vg~~~g~~~  251 (396)
                       +||+++|++|++++..+++++.++++.+++.+|+....++ +++.+..++|+.      .||++.++++.+|+.+|.++
T Consensus        77 ~~RPl~sG~is~~~a~~~~~~l~~~~~~l~~~l~~~~~~l~-~~~~~~~~~Y~~------~Kr~~~~~~~~~g~~~g~~~  149 (282)
T PRK12848         77 KNRPLASGAVSEKEALALFVVLVLVAFLLVLTLNTLTIWLS-VAALALAWIYPF------MKRYTHLPQVVLGAAFGWGI  149 (282)
T ss_pred             CCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHHHHHh------HHhcCcccHHHHHHHHHHHH
Confidence             8999999999999999999999999988888887766555 456667889975      79998899999999888666


Q ss_pred             HHHHHHHhhhhhhCCCCCChHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHcCCccchhhhccccHHHHHHHHHHHHHHH
Q 016056          252 QIPYFIHSQTYLLGKPFEVTGPFVFATAIMSIYAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKVLPLCVNMMLLGYGG  331 (396)
Q Consensus       252 ~lg~~~~~~~~l~g~~~~~~~~~~~~~~~~~l~~~~~~~~~d~~D~egD~~~G~~Tlpv~lG~~~a~~l~~~l~~~ay~~  331 (396)
                      .+|+.+..     | .  .+...+++.....+|+...++.++++|+|+|+++|+||+|+++|++++.+... ++.+....
T Consensus       150 ~~g~~a~~-----~-~--~~~~~~~l~~~~~~w~~~~~~~~a~~D~e~D~~~G~~tlpv~~G~~~~~~~~~-~~~~~~~~  220 (282)
T PRK12848        150 PMAFAAVQ-----G-S--VPLEAWLLFLANILWTVAYDTQYAMVDRDDDLKIGIKSTAILFGRYDKLIIGL-LQLATLAL  220 (282)
T ss_pred             HHHHHHHh-----C-C--CcHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHcCCccccHHhccccHHHHHH-HHHHHHHH
Confidence            66665421     2 2  23233444455678999999999999999999999999999999998877653 33333333


Q ss_pred             HHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHccCCChhhHHHHH-HHhHHH
Q 016056          332 AVVAGATSTLMISKLVTIIGHIILALMMWLRSRKVDLDNFDSQFGFY-MFLWQL  384 (396)
Q Consensus       332 ~~~~g~~~~~~~~~~~~~~g~~i~~~~l~~~~~~~d~~~~~~~~~f~-~~iw~l  384 (396)
                      ....+.....+   ..+.++..+....+.++...+|.+|+++|.++| .+.|-+
T Consensus       221 ~~~~~~~~~~~---~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~n~~~g  271 (282)
T PRK12848        221 LAWAGWLLGLG---WAYYWGLLVAAALFVYQQKLIRDREREACFKAFLNNNWVG  271 (282)
T ss_pred             HHHHHHHhcCc---HHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhCcHHH
Confidence            33333333222   345566667778888999999998877665544 444433

>PRK12882 ubiA prenyltransferase; Reviewed

Probab=100.00  E-value=1.1e-33  Score=273.68  Aligned_cols=258  Identities=21%  Similarity=0.219  Sum_probs=188.2

Q ss_pred             HHHHHHHhhccchHHHHHHHHHHHHHhhcccCCCCchHHHHHHHHHHHHHHHHHHHHhhhhhhhchhhhhccCCCCcccc
Q 016056           99 KLNAISHVTRYYAQINIIVSVTSVCFLPVQSLSQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDVEIDKINKPYLPLAS  178 (396)
Q Consensus        99 ~l~~~~~l~Rp~~~~~~~l~~l~g~llA~~~~~~~~~~~l~~~ll~~l~~~l~~~a~~~iNd~~D~e~D~~n~p~RPl~s  178 (396)
                      ++|+|+|++||++...+.++++.|++++.+..+  +...   .++++++.+++++++|++||++|+|+|++|+|+||+++
T Consensus         3 ~~~~~~~l~Rp~~~~~~~~~~~~g~~~a~~~~~--~~~~---~~l~~l~~~l~~~~~~~~Nd~~D~~iD~~~~~~Rpl~~   77 (276)
T PRK12882          3 TVRGYLELTRPVNAVVAGVAAFIGAFIAGGILS--SPSL---TGLAFAAVFLATGAGNAINDYFDREIDRINRPDRPIPS   77 (276)
T ss_pred             CHHHHHHHHhhhHHHHHHHHHHHHHHHhccccc--hHHH---HHHHHHHHHHHHHHHHHHHHHhhhccccccCCCCCcCC
Confidence            478999999999999999999999998854322  1111   34567888999999999999999999999999999999


Q ss_pred             CccCHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHhheecCCCCccCccccCchhHHHHHHHHHHHHHHHHHHH
Q 016056          179 GELSMGTGIAICAGSALLSLALAFLSGSPAVLCAVIAWGLTGAAYSVPLPFLRWKSHTFMAPFTLVILMGLILQIPYFIH  258 (396)
Q Consensus       179 G~ls~~~a~~~~~~~~~l~l~l~~~lg~~~l~l~l~~~~~l~~~Ys~~lpp~rlKr~~~~g~l~vg~~~g~~~~lg~~~~  258 (396)
                      |++|+++++.++.++.++++.+++.+|+....++ +++.++.++||.     |+||++.++|+.+|...|.++.+|... 
T Consensus        78 G~is~~~a~~~~~~l~~~g~~~~~~l~~~~~~~~-~~~~~~~~~Yt~-----~lK~~~~~g~~~vg~~~g~~~~~g~~~-  150 (276)
T PRK12882         78 GAVSPRGALAFSILLFAAGVALAFLLPPLCLAIA-LFNSLLLVLYAE-----TLKGTPGLGNASVAYLTGSTFLFGGAA-  150 (276)
T ss_pred             CCcCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHHHHHH-----HHhcccchhHHHHHHHHHHHHHHHHHH-
Confidence            9999999999999999999999888887666554 456667889986     589999889999988777555555432 


Q ss_pred             hhhhhhCCCCCChHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHcCCccchhhhccccHHHHHHHHHHHHHHHHHHHHHH
Q 016056          259 SQTYLLGKPFEVTGPFVFATAIMSIYAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKVLPLCVNMMLLGYGGAVVAGAT  338 (396)
Q Consensus       259 ~~~~l~g~~~~~~~~~~~~~~~~~l~~~~~~~~~d~~D~egD~~~G~~Tlpv~lG~~~a~~l~~~l~~~ay~~~~~~g~~  338 (396)
                           .+..  .....+.+.+..++++++++++||++|+|+|+++|+||+|+++|+|++.++.............+.-..
T Consensus       151 -----~~~~--~~~~~~~l~~~~fl~~~~~~~~~~~~D~e~D~~~G~~tlpv~~G~~~t~~~~~~~~~~~~~~~~~~~~~  223 (276)
T PRK12882        151 -----VGTE--GLLALLVLFALAALATLAREIIKDVEDIEGDRAEGARTLPILIGVRKALYVAAAFLLVAVAASPLPYLL  223 (276)
T ss_pred             -----hccc--chHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHcCCccccHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                 1211  111222333444567888999999999999999999999999999999887655554433322211111


Q ss_pred             hhhhhHHHHHHHHHHHH-HHHHHHHHHHccCCChhhHHHHH
Q 016056          339 STLMISKLVTIIGHIIL-ALMMWLRSRKVDLDNFDSQFGFY  378 (396)
Q Consensus       339 ~~~~~~~~~~~~g~~i~-~~~l~~~~~~~d~~~~~~~~~f~  378 (396)
                      ...+   ..+.+...+. ...+..+.+..+.+|++.+++++
T Consensus       224 ~~~~---~~y~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~f  261 (276)
T PRK12882        224 STFG---LWYLVLVAPADLVMLAAAYRSLKKTDPTASQKLL  261 (276)
T ss_pred             HHhh---HHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence            1222   2333333332 33445567777777777665543

>PRK12873 ubiA prenyltransferase; Reviewed

Probab=100.00  E-value=1.6e-33  Score=272.92  Aligned_cols=268  Identities=16%  Similarity=0.128  Sum_probs=202.2

Q ss_pred             HHHHHHHHhhccchHHHHHH---HHHHHHHhhcccCCCCchHHHHHHHHHHHHHHHHHHHHhhhhhhhchhhhhccCC--
Q 016056           98 RKLNAISHVTRYYAQINIIV---SVTSVCFLPVQSLSQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDVEIDKINKP--  172 (396)
Q Consensus        98 ~~l~~~~~l~Rp~~~~~~~l---~~l~g~llA~~~~~~~~~~~l~~~ll~~l~~~l~~~a~~~iNd~~D~e~D~~n~p--  172 (396)
                      +++++|+|++||+++.++.+   +.+.|.+++.+..+  ++.   ..++++++.+++++++|++||+.|+|+|++|+|  
T Consensus         5 ~~~~~y~~L~R~~Kp~~~~ll~~p~~~g~~la~~~~~--~~~---~~~~~~~g~~l~~~a~~~~Nd~~D~~iD~~~~RT~   79 (294)
T PRK12873          5 IKLSPWFELLRWNKPTGRLILLIPAGWSLWLTPSAPP--SLL---LLLLIILGGLAVSGAGCIANDLWDRRIDRKVERTK   79 (294)
T ss_pred             HhHHHHHHHhCccccchHHHHHHHHHHHHHHccCCCC--CHH---HHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcCC
Confidence            46889999999998877644   55677776643322  222   145677899999999999999999999999876  


Q ss_pred             CCccccCccCHHHHHHHHHHHHHHHHHHHHHh----cHHHHHHHHHHHHHHhheecCCCCccCccccCchhHHHHHHHHH
Q 016056          173 YLPLASGELSMGTGIAICAGSALLSLALAFLS----GSPAVLCAVIAWGLTGAAYSVPLPFLRWKSHTFMAPFTLVILMG  248 (396)
Q Consensus       173 ~RPl~sG~ls~~~a~~~~~~~~~l~l~l~~~l----g~~~l~l~l~~~~~l~~~Ys~~lpp~rlKr~~~~g~l~vg~~~g  248 (396)
                      +||+++|++|+++|+.+++++.++++.+.+.+    |+.++.++ .++++....||.      +||++.+.+++.|+..+
T Consensus        80 ~RPl~sG~is~~~A~~~~~~~~~~~~~~~~~l~~~~n~l~~~l~-~~~~~~~~~Y~~------~KR~t~~~~~vlg~~~a  152 (294)
T PRK12873         80 NRPLARGKISLKTAYSLLIVLLLLSLFVVLSLPQPSRNLCLSLA-FLALPPILIYPS------AKRWFAYPQAILALCWG  152 (294)
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHH-HHHHHHHHHHHH------HHhccccchHHHHHHHH
Confidence            89999999999999999999999998887665    45555554 345557789997      89999999999999888


Q ss_pred             HHHHHHHHHHhhhhhhCCCCCChHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHcCCccchhhhccccHHHHHHHHHHHH
Q 016056          249 LILQIPYFIHSQTYLLGKPFEVTGPFVFATAIMSIYAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKVLPLCVNMMLLG  328 (396)
Q Consensus       249 ~~~~lg~~~~~~~~l~g~~~~~~~~~~~~~~~~~l~~~~~~~~~d~~D~egD~~~G~~Tlpv~lG~~~a~~l~~~l~~~a  328 (396)
                      .++.+||.+..     | ..++....+++.+...+|+.+.+++++++|+|+|+++|++|+|+++|++ +......+..++
T Consensus       153 ~~~l~gw~Av~-----g-~~~~~~~~l~l~~~~~~W~~~~d~iyA~qD~edD~~~Gv~slpv~~G~~-~~~~~~~~~~~~  225 (294)
T PRK12873        153 FAVLIPWAAAE-----G-SLNGGWPLLFCWLATLLWTFGFDTVYAMADRRDDAKIGLNSSALSLGSN-ALKTVQICYFLT  225 (294)
T ss_pred             hHHHHHHHHHh-----C-CCchhHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHcCCcccchhcChh-hHHHHHHHHHHH
Confidence            88888876542     3 2222223333335567899999999999999999999999999999975 445555666666


Q ss_pred             HHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHccCCC--hhhH-HHHHHHhHHHHHH
Q 016056          329 YGGAVVAGATSTLMISKLVTIIGHIILALMMWLRSRKVDLDN--FDSQ-FGFYMFLWQLNYV  387 (396)
Q Consensus       329 y~~~~~~g~~~~~~~~~~~~~~g~~i~~~~l~~~~~~~d~~~--~~~~-~~f~~~iw~l~~~  387 (396)
                      .......|.....+   ..|.++.++.+..+.+|++.+|.++  +++| +.|..+.|.+...
T Consensus       226 ~~ll~~~g~~~~l~---~~y~~~~~~~~~~l~~~~~~~~~~~~~~~~c~~~F~~n~~~G~~i  284 (294)
T PRK12873        226 SIFLALAAFIAQVG---FIFWPFWLIASIGMQRDILKLFPEKQSIKTIGNHFSNQVILGSLL  284 (294)
T ss_pred             HHHHHHHHHHhCCc---HHHHHHHHHHHHHHHHHHHHhCcCcccHHHHHHHHHhccHHHHHH
Confidence            66566666665544   3455666677788899999999887  3555 6676777766543

>PRK12876 ubiA prenyltransferase; Reviewed

Probab=100.00  E-value=5e-33  Score=269.54  Aligned_cols=280  Identities=16%  Similarity=0.154  Sum_probs=201.8

Q ss_pred             HHHHHHHHhhccchHHHHHHHHHHHHHhhc------cc---CCCCchHHHHHHHHHHHHHHHHHHHHhhhhhhhchhhhh
Q 016056           98 RKLNAISHVTRYYAQINIIVSVTSVCFLPV------QS---LSQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDVEIDK  168 (396)
Q Consensus        98 ~~l~~~~~l~Rp~~~~~~~l~~l~g~llA~------~~---~~~~~~~~l~~~ll~~l~~~l~~~a~~~iNd~~D~e~D~  168 (396)
                      ++++.|.|+.|.++-+...--...|+++|.      ++   .+  ++.   .+++..++.+++++++|++||++|+|+|+
T Consensus         2 ~~~~~~~~~i~~~ht~Falpfa~~~~~~a~~~~~~~~~~~~~~--~~~---~~~~~~~a~~~~Rsag~~~Nd~~DrdiD~   76 (300)
T PRK12876          2 MRIKYFQQLINCKYALFSALFLSASTVFALSLPEISFSLFSLG--GIK---TISLGGSAFFCARTVGIIVNQIIDCAIDK   76 (300)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCcCCC--CHH---HHHHHHHHHHHHHHHHHHHHhHHHhcccC
Confidence            468999999999988777666677888884      22   22  222   24567789999999999999999999999


Q ss_pred             ccCC--CCccccCccCHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHhheecCCCCccCccccCchhHHHHHHH
Q 016056          169 INKP--YLPLASGELSMGTGIAICAGSALLSLALAFLSGSPAVLCAVIAWGLTGAAYSVPLPFLRWKSHTFMAPFTLVIL  246 (396)
Q Consensus       169 ~n~p--~RPl~sG~ls~~~a~~~~~~~~~l~l~l~~~lg~~~l~l~l~~~~~l~~~Ys~~lpp~rlKr~~~~g~l~vg~~  246 (396)
                      +|+|  +||+|+|++|+++|+.+.+++.++++.++..+|+.++.++. ++.++.++||.      +||++++++++.|++
T Consensus        77 ~~~RT~~RPLpsG~is~~~A~~~~~~~~~~~~~l~~~ln~l~~~l~~-~~~~~~~iY~~------~KR~t~~~~~vLGl~  149 (300)
T PRK12876         77 KNPRTSSRVLPAKLLSINFSMLLLTLCSFLFLSLCWLLNPLCFSLAV-LSTLLMIIYPY------TKRVTFLCHWILGLV  149 (300)
T ss_pred             CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHHh------HhcCCchhHHHHHHH
Confidence            9996  99999999999999999987777777788888988776664 56666789987      899999999999988


Q ss_pred             HHHHHHHHHHHHhhhhhhCCCCCChH--HHHHHHHHHHHHHHHHHHHHhCCChHHHHHcCCccchhhhccccHHHHHHHH
Q 016056          247 MGLILQIPYFIHSQTYLLGKPFEVTG--PFVFATAIMSIYAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKVLPLCVNM  324 (396)
Q Consensus       247 ~g~~~~lg~~~~~~~~l~g~~~~~~~--~~~~~~~~~~l~~~~~~~~~d~~D~egD~~~G~~Tlpv~lG~~~a~~l~~~l  324 (396)
                      .+..+..++.+.     .++..++..  ..++......+|..++|++|+++|+|+|++.|+||+|+++|++++.++...+
T Consensus       150 ~~~~~l~~~~Av-----~~~~~~~~l~~~~~lw~~~~~~~~~g~DiiYa~qD~e~D~~~Gl~Slpv~fG~~~a~~ia~~~  224 (300)
T PRK12876        150 YYLAILMNFFAI-----IETPLSFSLFCMASLWGISFGMIIAANDIIYAIQDLEFDRKEGLFSIPARFGEKKAIRIASAN  224 (300)
T ss_pred             HHHHHHHHHHHH-----hcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHhhHHHcCCccchHHHCchhHHHHHHHH
Confidence            887666666543     232111100  1112223345677789999999999999999999999999999887766666


Q ss_pred             HHHHHHHHHHHHHHhhhhhHHHHHHHHHH--HHHHHHHHHHHHccCCChhhHHHHHHH-hH--HHHHHHHHHhhhcC
Q 016056          325 MLLGYGGAVVAGATSTLMISKLVTIIGHI--ILALMMWLRSRKVDLDNFDSQFGFYMF-LW--QLNYVEYILIHFLR  396 (396)
Q Consensus       325 ~~~ay~~~~~~g~~~~~~~~~~~~~~g~~--i~~~~l~~~~~~~d~~~~~~~~~f~~~-iw--~l~~~~y~~~~~~~  396 (396)
                      ..++.+..++.+.....++.  .+..+..  .....+++|.+.+|.|+++.|.+||.. .|  -++++..+..+.+|
T Consensus       225 ~~l~~~~l~~~g~~~~l~~~--~y~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~F~~N~~ig~~~~~~~~~~~~~~  299 (300)
T PRK12876        225 LIASAIAYLLIGYFVSNKKI--FYLCSLVPLTVILKTIKHYSLIDKKKSTLEQKFFLGNIYLALSFFVNMIGLFLLR  299 (300)
T ss_pred             HHHHHHHHHHHHHHhhccHH--HHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHhcCHHHHHHHHHHHHHHccC
Confidence            66655555555655544432  2333443  222334566577777778888776644 33  34455566666555

>PRK12392 bacteriochlorophyll c synthase; Provisional

Probab=100.00  E-value=4.1e-33  Score=275.06  Aligned_cols=253  Identities=17%  Similarity=0.201  Sum_probs=177.6

Q ss_pred             HHHHHHHHHhhccchHHHHHHHHHHHHHhhcccC-CCCchHHHHHHHHHHHHHHHHHHHHhhhhhhhchhhhhccCCCCc
Q 016056           97 KRKLNAISHVTRYYAQINIIVSVTSVCFLPVQSL-SQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDVEIDKINKPYLP  175 (396)
Q Consensus        97 ~~~l~~~~~l~Rp~~~~~~~l~~l~g~llA~~~~-~~~~~~~l~~~ll~~l~~~l~~~a~~~iNd~~D~e~D~~n~p~RP  175 (396)
                      .+++|+|+|++||+++. ..++++.|.++|.+.. +...... +.+...++.+.+..+++|++|||+|+|+|++|+|.||
T Consensus         9 ~~~~k~~l~L~kP~t~l-~~~p~~~g~~lA~g~~~~~~~~~~-l~l~~~~~~~~L~~~a~~~iND~~D~~~D~~n~rtRp   86 (331)
T PRK12392          9 VDKIRAHLELLDPVTWI-SVFPCLAGGVMASGAMQPTLHDYL-LLLALFLMYGPLGTGFSQSVNDYFDLELDRVNEPTRP   86 (331)
T ss_pred             hHHHHHHHHHHCHHHHH-HHHHHHHHHHHHcCCCCCChhHHH-HHHHHHHHHHHHHHHHHhHHhcceeecccccCCCCCC
Confidence            46799999999999998 6677777777875422 2222111 1122233444566678999999999999999999999


Q ss_pred             cccCccCHHHHHHHHHHHHHHHHHHHHHhcH-------HHHHHHHHHHHHHhheecCCCCccCccccCchhHHHHHHHHH
Q 016056          176 LASGELSMGTGIAICAGSALLSLALAFLSGS-------PAVLCAVIAWGLTGAAYSVPLPFLRWKSHTFMAPFTLVILMG  248 (396)
Q Consensus       176 l~sG~ls~~~a~~~~~~~~~l~l~l~~~lg~-------~~l~l~l~~~~~l~~~Ys~~lpp~rlKr~~~~g~l~vg~~~g  248 (396)
                      +++|++|+++++.+.+++.++++.++..++.       +.+.+..+++++++++||.  ||+++||+++.++..+|+.++
T Consensus        87 l~~G~is~~~al~~~~~l~~la~~lg~~L~~~~~~~~~~~il~~~~~~l~l~~~YS~--~P~~lKr~~~~g~~~vGl~~~  164 (331)
T PRK12392         87 IPSGRLSEKEALWNSIIVLLLAIGLGVWLGLHIGGERGMVIISSILAGLFVAYIYSA--PPLKLKKNILTSAPAVGFSYG  164 (331)
T ss_pred             CCcCCcCHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHhhhhcC--CchhhhccchhHHHHHHHHHH
Confidence            9999999999999999888888877666542       2222322456778999999  999999999889988888887


Q ss_pred             HHHHHHHHHHhhhhhhCCCCCChHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHcCCccchhhhccccHHHHHHHHHHHH
Q 016056          249 LILQIPYFIHSQTYLLGKPFEVTGPFVFATAIMSIYAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKVLPLCVNMMLLG  328 (396)
Q Consensus       249 ~~~~lg~~~~~~~~l~g~~~~~~~~~~~~~~~~~l~~~~~~~~~d~~D~egD~~~G~~Tlpv~lG~~~a~~l~~~l~~~a  328 (396)
                      .....++.+     .+|.   .+...+++.+..++|+.+++++||++|+|+|++.|+||+|+++|++++.++......+.
T Consensus       165 ~~~~~~~~a-----~~g~---~~~~~~~l~~~~~l~~~~~~~i~d~~D~egD~~~G~kTlpV~~G~~~a~~i~~~~~~~~  236 (331)
T PRK12392        165 FITFLSANA-----LFSD---IRPEVVWLAGLNFFMAIALIIMNDFKSVEGDKEGGLKSLTVMIGAKNTFLVSFIIIDLV  236 (331)
T ss_pred             HHHHHHHHH-----HhcC---CCHHHHHHHHHHHHHHHHHHHHHcccchhhHHHcCCeeeEeEEcHhhHHHHHHHHHHHH
Confidence            433333222     2232   23333444455678899999999999999999999999999999999988765555455


Q ss_pred             HHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 016056          329 YGGAVVAGATSTLMISKLVTIIGHIILALMMWLRSR  364 (396)
Q Consensus       329 y~~~~~~g~~~~~~~~~~~~~~g~~i~~~~l~~~~~  364 (396)
                      .+..+..+.....++.   +....++.+..+++|.+
T Consensus       237 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~q~~  269 (331)
T PRK12392        237 FAVFAWLAWSWGFTVL---MYFILVGLVLNIVIQIQ  269 (331)
T ss_pred             HHHHHHHHHHhcccHH---HHHHHHHHHHHHHHHHH
Confidence            5555444544444322   22333334444555544

>COG0382 UbiA 4-hydroxybenzoate polyprenyltransferase and related prenyltransferases [Coenzyme metabolism]

Probab=100.00  E-value=1.5e-32  Score=267.53  Aligned_cols=273  Identities=25%  Similarity=0.324  Sum_probs=205.0

Q ss_pred             HHHHHHHHHhhccchHHH---HHHHHHHHHHhhcccCCCCchHHHHHHHHHHHHHHHHHHHHhhhhhhhchhhhhccCC-
Q 016056           97 KRKLNAISHVTRYYAQIN---IIVSVTSVCFLPVQSLSQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDVEIDKINKP-  172 (396)
Q Consensus        97 ~~~l~~~~~l~Rp~~~~~---~~l~~l~g~llA~~~~~~~~~~~l~~~ll~~l~~~l~~~a~~~iNd~~D~e~D~~n~p-  172 (396)
                      +.+++.+.+++|+++++.   ...+..+|..++....+.     +...++++++++++++++|++||++|+|+|++|+| 
T Consensus         7 ~~~~~~~~~l~r~~r~i~~l~~~~~~~~~~~~~~~~~~~-----~~~~~l~~l~~~~~~~ag~~iND~~D~eiD~~n~rt   81 (289)
T COG0382           7 PNKLKALLKLLRLDRPIFNLLLLLPALLGLLLAASGLPS-----LKLLLLAFLAFFLARSAGYVINDLADREIDRINPRT   81 (289)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcCCch-----HHHHHHHHHHHHHHHHHhHHHHHHhhhhccCCCCCc
Confidence            344555555555555544   455666676666422221     22356678889999999999999999999999999 


Q ss_pred             -CCccccCccCHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHhheecCCCCccCccccCchhHHHHHHHHHHHH
Q 016056          173 -YLPLASGELSMGTGIAICAGSALLSLALAFLSGSPAVLCAVIAWGLTGAAYSVPLPFLRWKSHTFMAPFTLVILMGLIL  251 (396)
Q Consensus       173 -~RPl~sG~ls~~~a~~~~~~~~~l~l~l~~~lg~~~l~l~l~~~~~l~~~Ys~~lpp~rlKr~~~~g~l~vg~~~g~~~  251 (396)
                       +||+|+|++|+++++.+.+++.++++.+++.+|++.+.+. +++.++.+.|..      +||.++++++++|.++|..+
T Consensus        82 ~~RPl~sG~vS~~~a~~~~~~~~~~~~~~a~~l~~~~~~l~-~~~~~l~~~Y~~------~Kr~~~~~~~~lg~~~~~~~  154 (289)
T COG0382          82 KNRPLPSGRVSVKEALLLAILLLLLGLALALLLNPLAFLLS-LAALVLALAYPF------LKRFTFLPQLVLGLAFGLGA  154 (289)
T ss_pred             cCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHHHHHH------hhcCCchHHHHHHHHHHHHH
Confidence             9999999999999999999999999999999998776555 567888899954      99999999999999999777


Q ss_pred             HHHHHHHhhhhhhCCCCCChHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHcCCccchhhhccccHHHHHHHHHHHHHHH
Q 016056          252 QIPYFIHSQTYLLGKPFEVTGPFVFATAIMSIYAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKVLPLCVNMMLLGYGG  331 (396)
Q Consensus       252 ~lg~~~~~~~~l~g~~~~~~~~~~~~~~~~~l~~~~~~~~~d~~D~egD~~~G~~Tlpv~lG~~~a~~l~~~l~~~ay~~  331 (396)
                      ..|+.+..     | .  .....+++.++..+|+.+++++||++|+|+|++.|++|+|+.+|++++..+..... .....
T Consensus       155 ~~g~~a~~-----~-~--~~~~~~~l~~~~~l~~~~~~~i~~~~D~e~D~~~G~~s~~~~~G~~~a~~l~~~~~-~~~~~  225 (289)
T COG0382         155 LAGAAAVG-----G-S--LPLLAWLLLLAAILWTLGYDIIYAIQDIEGDRKAGLKSLPVLFGIKKALALALLLL-LASAL  225 (289)
T ss_pred             HHHHHHHh-----C-c--cchHHHHHHHHHHHHHHHHHHHHhccCccchHhcCCcchHHHhCchhHHHHHHHHH-HHHHH
Confidence            77765431     2 1  22334455566778999999999999999999999999999999999988876555 33333


Q ss_pred             HHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHccCCChhhHHHHHHHhHHHHHHHHHHh
Q 016056          332 AVVAGATSTLMISKLVTIIGHIILALMMWLRSRKVDLDNFDSQFGFYMFLWQLNYVEYILI  392 (396)
Q Consensus       332 ~~~~g~~~~~~~~~~~~~~g~~i~~~~l~~~~~~~d~~~~~~~~~f~~~iw~l~~~~y~~~  392 (396)
                      ....+......  ...+..++.+....+.++...+|.++++.+..++.....+-.+.++..
T Consensus       226 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  284 (289)
T COG0382         226 LVLLGLLAGLL--GLIYLLGLLVAALLLLYQILIVDVRDPPACFALFDVNLLLGLLLFIGL  284 (289)
T ss_pred             HHHHHHHHhhc--hHHHHHHHHHHHHHHHHHHHHhcccChHHHHHHHHHhhHHHHHHHHHH
Confidence            33333322221  135666777778888999999999888888888776555555554443

>TIGR02056 ChlG chlorophyll synthase, ChlG

Probab=100.00  E-value=1.2e-32  Score=269.93  Aligned_cols=223  Identities=22%  Similarity=0.245  Sum_probs=171.0

Q ss_pred             HHHHHHHHHHHhhccchHHHHHHHHHHHHHhhcccCCCCchHH---HHHHHHHHHHHHHHHHHHhhhhhhhchhhhhccC
Q 016056           95 VVKRKLNAISHVTRYYAQINIIVSVTSVCFLPVQSLSQVTPAF---LLGVLKAVVAQIFMNISLCSLNQICDVEIDKINK  171 (396)
Q Consensus        95 ~~~~~l~~~~~l~Rp~~~~~~~l~~l~g~llA~~~~~~~~~~~---l~~~ll~~l~~~l~~~a~~~iNd~~D~e~D~~n~  171 (396)
                      ..++++++|+|++||+++..++++++.|...+.    .+++..   +..++.+++++.++++++|.+|||+|+|.|+.|+
T Consensus        11 ~~~~~~~~~~~l~RP~~~~~~~~~~~~G~~~~~----~~~~~~~~~~~~ll~~ll~~~l~~~~~n~~NDy~D~d~D~~~~   86 (306)
T TIGR02056        11 GETNIWKIRLQLMKPITWIPLIWGVVCGAAASG----NFHWSLEDVAKAALCMLLSGPCLTGYTQTINDFYDRDIDAINE   86 (306)
T ss_pred             cchhHHHHHHHHcChHhhHHHHHHHHHHHHHcC----CCCcchhhHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhccCC
Confidence            345778999999999999999999999988542    222211   1123445677799999999999999999999999


Q ss_pred             CCCccccCccCHHHHHHHHHHHHHHHHHHHHHhc-------HHHHHHHHHHHHHHhheecCCCCccCccccCchhHHHHH
Q 016056          172 PYLPLASGELSMGTGIAICAGSALLSLALAFLSG-------SPAVLCAVIAWGLTGAAYSVPLPFLRWKSHTFMAPFTLV  244 (396)
Q Consensus       172 p~RPl~sG~ls~~~a~~~~~~~~~l~l~l~~~lg-------~~~l~l~l~~~~~l~~~Ys~~lpp~rlKr~~~~g~l~vg  244 (396)
                      |+||+++|++++++++.+++++.++++.+++.+.       ++.+.++ +++++++++||.  ||+++||++++|++.++
T Consensus        87 ~~Rpi~~G~is~~~a~~~~~~l~~~~~~lg~~l~~~~~~~~~~~~~l~-~~~~~~~~~Yt~--gP~~lk~~g~~G~i~vg  163 (306)
T TIGR02056        87 PYRPIPSGAISEPEVITQIVLLFIAGIAIAFILDLWAGHEFPNVFVLA-LFGSFIAFIYSA--PPLKLKQNGWLGNFALG  163 (306)
T ss_pred             CCCCCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHH-HHHHHHHHHHcC--ChhhhhhcccHHHHHHH
Confidence            9999999999999999998888888877765542       3333343 467778999999  99999999988999888


Q ss_pred             HHHHHHHHHHHHHHhhhhhhCCCCCChHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHcCCccchhhhccccHHHHHHHH
Q 016056          245 ILMGLILQIPYFIHSQTYLLGKPFEVTGPFVFATAIMSIYAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKVLPLCVNM  324 (396)
Q Consensus       245 ~~~g~~~~lg~~~~~~~~l~g~~~~~~~~~~~~~~~~~l~~~~~~~~~d~~D~egD~~~G~~Tlpv~lG~~~a~~l~~~l  324 (396)
                      ..++..+..+.++     +.| .  ++...++.....++|+.++++.||++|+|+|++.|+||+|+++|+|++++++..+
T Consensus       164 ~~~~~~~~~~~~a-----~~g-~--~~~~~~l~~~~~~l~~~~i~~~n~~~D~e~D~~~G~~Tlpv~lG~~~a~~~~~~l  235 (306)
T TIGR02056       164 ASYIALPWWAGHA-----LFG-E--LNPDIAVLTLIYSIAGLGIAIVNDFKSVEGDRALGLQSLPVAFGIETAAWICVGA  235 (306)
T ss_pred             HHHHHHHHHHHHH-----HhC-C--CcHHHHHHHHHHHHHHHHHHHHHHccChHHHHHcCCcCcchhcChHHHHHHHHHH
Confidence            7666322222111     123 1  2333344445566789999999999999999999999999999999999988777


Q ss_pred             HHHHHHHH
Q 016056          325 MLLGYGGA  332 (396)
Q Consensus       325 ~~~ay~~~  332 (396)
                      ...++...
T Consensus       236 ~~~~~~~~  243 (306)
T TIGR02056       236 IDIFQGLI  243 (306)
T ss_pred             HHHHHHHH
Confidence            76666543

This model represents the strictly cyanobacterial and plant-specific chlorophyll synthase ChlG. ChlG is the enzyme (esterase) which attaches the side chain moiety onto chlorophyllide a. Both geranylgeranyl and phytyl pyrophosphates are substrates to varying degrees in enzymes from different sources. Thus, ChlG may act as the final or penultimate step in chlorophyll biosynthesis (along with the geranylgeranyl reductase, ChlP).

>TIGR01474 ubiA_proteo 4-hydroxybenzoate polyprenyl transferase, proteobacterial

Probab=100.00  E-value=4e-32  Score=263.40  Aligned_cols=256  Identities=18%  Similarity=0.159  Sum_probs=186.7

Q ss_pred             HHHHHhhccchHHHH---HHHHHHHHHhhcccCCCCchHHHHHHHHHHHHHHHHHHHHhhhhhhhchhhhhccCC--CCc
Q 016056          101 NAISHVTRYYAQINI---IVSVTSVCFLPVQSLSQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDVEIDKINKP--YLP  175 (396)
Q Consensus       101 ~~~~~l~Rp~~~~~~---~l~~l~g~llA~~~~~~~~~~~l~~~ll~~l~~~l~~~a~~~iNd~~D~e~D~~n~p--~RP  175 (396)
                      ++|.|++|++++...   .+++..|..+|....+..++..   .++.+++.+++++++|++|||+|+|+|+.|+|  +||
T Consensus         2 ~~y~~l~R~~kp~~~~l~~~~~~~g~~la~~~~~~~~~~~---~~~~~~~~~l~~~a~~~~Nd~~D~~iD~~~~Rt~~RP   78 (281)
T TIGR01474         2 LPYAKLMRADKPIGTLLLLWPCLWSLLLAAQAGGIPPLYL---LGLFTVGAILMRGAGCVINDIWDRDFDPQVERTKSRP   78 (281)
T ss_pred             hHHHHHHccccHHHHHHHHHHHHHHHHHHhcccCCCcHHH---HHHHHHHHHHHHHHHHHHHhHhhhcccccCCcccCCC
Confidence            567888777766554   5567788888754111112221   34566788899999999999999999998764  899


Q ss_pred             cccCccCHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHhheecCCCCccCccccCchhHHHHHHHHHHHHHHHH
Q 016056          176 LASGELSMGTGIAICAGSALLSLALAFLSGSPAVLCAVIAWGLTGAAYSVPLPFLRWKSHTFMAPFTLVILMGLILQIPY  255 (396)
Q Consensus       176 l~sG~ls~~~a~~~~~~~~~l~l~l~~~lg~~~l~l~l~~~~~l~~~Ys~~lpp~rlKr~~~~g~l~vg~~~g~~~~lg~  255 (396)
                      +|+|++|+++++.++.++.++++.+++.+|+....++ +++.++.+.||.      +||++.++++..|+.++.++..|+
T Consensus        79 l~sG~is~~~a~~~~~~~~~~~~~l~~~l~~~~~~l~-~~~~~~~~~Y~~------~Kr~~~~~~~~~g~~~~~~~~~g~  151 (281)
T TIGR01474        79 LASGAVSVRQAILFLLVQLLVALGVLLQLNPLTILLG-VASLALVATYPF------MKRITYWPQLVLGLAFGWGALMGW  151 (281)
T ss_pred             CCCCCcCHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH-HHHHHHHHHhch------hcccccccHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999888888776665 456777999996      799999999999988887777776


Q ss_pred             HHHhhhhhhCCCCCChHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHcCCccchhhhccccHHHHHHHHHHHHHHHHHHH
Q 016056          256 FIHSQTYLLGKPFEVTGPFVFATAIMSIYAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKVLPLCVNMMLLGYGGAVVA  335 (396)
Q Consensus       256 ~~~~~~~l~g~~~~~~~~~~~~~~~~~l~~~~~~~~~d~~D~egD~~~G~~Tlpv~lG~~~a~~l~~~l~~~ay~~~~~~  335 (396)
                      ++.     .| .  .+...+++.....+|+.+.+++++++|+|+|+++|+||+|+++|++++++... +..++.....+.
T Consensus       152 ~a~-----~g-~--~~~~~~ll~~~~~lw~~~~~~~~a~~D~e~D~~~G~~tlpv~~G~~~~~~~~~-~~~~~~~~~~~~  222 (281)
T TIGR01474       152 AAV-----TG-D--LSTAAWVLYLANILWTLGYDTIYAMQDKEDDIKIGVKSTALRFGDNTKPWLGG-LYALMILLLALA  222 (281)
T ss_pred             HHH-----cC-C--CcHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHcCCCcccHHhhhhhHHHHHH-HHHHHHHHHHHH
Confidence            543     13 2  23233333445568899999999999999999999999999999988755433 333333333333


Q ss_pred             HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHccCCChhhHHHHH
Q 016056          336 GATSTLMISKLVTIIGHIILALMMWLRSRKVDLDNFDSQFGFY  378 (396)
Q Consensus       336 g~~~~~~~~~~~~~~g~~i~~~~l~~~~~~~d~~~~~~~~~f~  378 (396)
                      +.....+   ..+.++..+....+.++..++|.+|+++++++|
T Consensus       223 ~~~~~~~---~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F  262 (281)
T TIGR01474       223 GLIAGLG---PVYYLGLAAAALLLIRQIATLDIRDPENCLKLF  262 (281)
T ss_pred             HHHhCCc---HHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence            3332222   234455666677788888888887777766654

A fairly deep split by both clustering (UPGMA) and phylogenetics (NJ tree) separates this group (mostly Proteobacterial and mitochondrial), with several characterized members, from another group (mostly archaeal and Gram-positive bacterial) lacking characterized members.

>PRK05951 ubiA prenyltransferase; Reviewed

Probab=100.00  E-value=5.4e-32  Score=264.24  Aligned_cols=266  Identities=15%  Similarity=0.152  Sum_probs=191.4

Q ss_pred             HHHHHHHhhccchHHHHHHHHHHHHHhhcccCCCCchHHHHHHHHHHHHHHHHHHHHhhhhhhhchhhhhccC-----CC
Q 016056           99 KLNAISHVTRYYAQINIIVSVTSVCFLPVQSLSQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDVEIDKINK-----PY  173 (396)
Q Consensus        99 ~l~~~~~l~Rp~~~~~~~l~~l~g~llA~~~~~~~~~~~l~~~ll~~l~~~l~~~a~~~iNd~~D~e~D~~n~-----p~  173 (396)
                      ++|.|++.+||+++..++.++++|.++|+....++++..   +++++++++++++++|.+|||+|+|.|..++     ++
T Consensus         3 ~~~~~~~~~Rp~tl~~s~~~v~lG~a~a~~~~~~f~~~~---~ll~~l~~~l~~~~~n~~Ndy~D~~~g~D~~~rt~~~~   79 (296)
T PRK05951          3 NAKLFFIFTRPWSFVMTAIVAFFSIAYGYYLFRSFDPLL---GALMLLGYFLLHASLNVFNDYKDYVLDCDHHETTGYRQ   79 (296)
T ss_pred             cHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcCCcCHHH---HHHHHHHHHHHHHHHHHHHhHHHHhcCCccccccCCCC
Confidence            688999999999999999999999999875434566533   4667889999999999999999965554444     67


Q ss_pred             CccccCccCHHHHHHHHHHHHHHHHHHH----HHhcHHHHHHHHHHHHHHhheecCCCCccCccccCchhHHHHHHHHHH
Q 016056          174 LPLASGELSMGTGIAICAGSALLSLALA----FLSGSPAVLCAVIAWGLTGAAYSVPLPFLRWKSHTFMAPFTLVILMGL  249 (396)
Q Consensus       174 RPl~sG~ls~~~a~~~~~~~~~l~l~l~----~~lg~~~l~l~l~~~~~l~~~Ys~~lpp~rlKr~~~~g~l~vg~~~g~  249 (396)
                      ||+++|++|+++++..+.++..+++.++    ...+++.+.++ +++.++++.||.  ||+++|+++ +|++.+++.+|.
T Consensus        80 r~l~~G~is~~~~~~~~~~~~~ia~~~g~~l~~~~~~~~l~l~-~~~~~~~~~Yt~--~P~~lky~g-lGe~~v~~~~g~  155 (296)
T PRK05951         80 HPIQAGIMTLGHLRVLGIALGAIALQLGWSLVLDRGIGAVTLA-LLGVFLWTCYMG--PPFFLKYRW-LGEHLVFYAWSH  155 (296)
T ss_pred             CccccCCcCHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHH-HHHHHHHHHHcC--CCcccCCCC-chHHHHHHHHHH
Confidence            9999999999999998877666655443    22355444444 567889999999  999999887 699999999996


Q ss_pred             HHHHHHHHHhhhhhhCCCCCChHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHcCCccchhhhccccHHHHHHHHHHHHH
Q 016056          250 ILQIPYFIHSQTYLLGKPFEVTGPFVFATAIMSIYAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKVLPLCVNMMLLGY  329 (396)
Q Consensus       250 ~~~lg~~~~~~~~l~g~~~~~~~~~~~~~~~~~l~~~~~~~~~d~~D~egD~~~G~~Tlpv~lG~~~a~~l~~~l~~~ay  329 (396)
                      .+.+|.+..     .++.  .+...+.......+++....+.||++|+|+|++.|+||+|+++|+|++ ++...++..+|
T Consensus       156 ~~vlg~~~~-----~~~~--~~~~~~~~sl~~~l~~~~il~~n~~~D~e~D~~~G~~Tlav~lG~~~a-~~~~~~~~~~~  227 (296)
T PRK05951        156 MLVMGLIYV-----WLGN--LSSPNLLAGVPLGLLMALVLLSNNLRDIEDDERKGIPTLAVIFGRRGA-ALYIFALLSPY  227 (296)
T ss_pred             HHHHHHHHH-----HhCc--ccHHHHHHHHHHHHHHHHHHHHCCCccchhHHHCCCeeeeeeEcHhhH-HHHHHHHHHHH
Confidence            666665442     1222  222333334455667778889999999999999999999999999999 66556677777


Q ss_pred             HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHccCCChhhHHHHHH
Q 016056          330 GGAVVAGATSTLMISKLVTIIGHIILALMMWLRSRKVDLDNFDSQFGFYM  379 (396)
Q Consensus       330 ~~~~~~g~~~~~~~~~~~~~~g~~i~~~~l~~~~~~~d~~~~~~~~~f~~  379 (396)
                      +..+........++..+++.+++......+.++.++.|.++.+.+.+++.
T Consensus       228 ~~~~~~~~~g~~~~~~l~~ll~lp~~~~~~~~~~~~~~~~~~~~~~~~~~  277 (296)
T PRK05951        228 VILQILLIAILTPLISLWALLSLLVAYALCLWQLRKFPPDPDEATVQLFM  277 (296)
T ss_pred             HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhCcccccHHHHHHHH
Confidence            66554444333344333444444444444455555666555554544443

>PRK12869 ubiA protoheme IX farnesyltransferase; Reviewed

Probab=100.00  E-value=2e-31  Score=258.20  Aligned_cols=264  Identities=16%  Similarity=0.124  Sum_probs=180.7

Q ss_pred             HHHHHHHhhccchHHHHHHHHHHHHHhhcccCCCCchHHHHHHHHHHHHHHHHHHHHhhhhhhhchhhhhccC--CCCcc
Q 016056           99 KLNAISHVTRYYAQINIIVSVTSVCFLPVQSLSQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDVEIDKINK--PYLPL  176 (396)
Q Consensus        99 ~l~~~~~l~Rp~~~~~~~l~~l~g~llA~~~~~~~~~~~l~~~ll~~l~~~l~~~a~~~iNd~~D~e~D~~n~--p~RPl  176 (396)
                      ++++|+|++||++.....++++.|.++|.+..  .++..   +++.+++.+++++++|++|||+|+|+|++|+  |+||+
T Consensus         1 ~~~~~~~l~rp~~~~~~~~~~~~g~~la~~~~--~~~~~---~~l~~~~~~l~~~a~~~~Nd~~D~~iD~~~~Rt~~RPl   75 (279)
T PRK12869          1 KIKAYLKLLKPRVIWLLDLAAVAGYFLAAKHG--VSWLP---LIPLLIGGTLASGGSAAFNHGIERDIDKVMSRTSKRPT   75 (279)
T ss_pred             CHHHHHHHhHHHHHHHHHHHHHHHHHHhccCC--CCHHH---HHHHHHHHHHHHHHHHHHhchHhcCCCCCCCCCCCCCc
Confidence            47899999999999999999999999885432  23321   3456788899999999999999999999988  58999


Q ss_pred             ccCccCHHHHHHHHHHHHHHHHHHHHH-hcHHHHHHHHHHHHHHhheecCCCCccCccccCchhHHHHHHHHH-HHHHHH
Q 016056          177 ASGELSMGTGIAICAGSALLSLALAFL-SGSPAVLCAVIAWGLTGAAYSVPLPFLRWKSHTFMAPFTLVILMG-LILQIP  254 (396)
Q Consensus       177 ~sG~ls~~~a~~~~~~~~~l~l~l~~~-lg~~~l~l~l~~~~~l~~~Ys~~lpp~rlKr~~~~g~l~vg~~~g-~~~~lg  254 (396)
                      |+|++|+++++.+++++.++|+.++.. +|+.+.....+...+..+.||.     ++||+++. +..++...| .++..|
T Consensus        76 ~sG~is~~~a~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~Yt~-----~lKr~~~~-~~~v~~~~g~~~~l~g  149 (279)
T PRK12869         76 PVGLVNRKEALAVGSALSALGTALGFLLLGPLTALFIALGWFFYAVVYTI-----WLKPRTWL-NIVIGGFAGNAAALAG  149 (279)
T ss_pred             CCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCc-----ccccCChH-HHHHHHHHHHHHHHHH
Confidence            999999999999999999999988776 7765433322345567789996     48999975 545555455 555555


Q ss_pred             HHHHhhhhhhCCCCCChHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHcCCccchhhhccccHHHHHHHHHHHHHHHHHH
Q 016056          255 YFIHSQTYLLGKPFEVTGPFVFATAIMSIYAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKVLPLCVNMMLLGYGGAVV  334 (396)
Q Consensus       255 ~~~~~~~~l~g~~~~~~~~~~~~~~~~~l~~~~~~~~~d~~D~egD~~~G~~Tlpv~lG~~~a~~l~~~l~~~ay~~~~~  334 (396)
                      +.+..     | .  .+...+++...+.+|+.+.....+++|+|+|+++|+||+|+++|++++.+....+..+.......
T Consensus       150 ~~a~~-----g-~--~~~~~~ll~~~~~~w~~~~~~~l~~~d~edd~~~G~~tlpv~~G~~~a~~~~~~~~~~~~~~~~~  221 (279)
T PRK12869        150 YASGT-----G-S--LDLEAVLLSFLIYLWTPGHIWSLALKYREDYRRAGVPMLPAVVGEKTSVRAISISNALMIPYILL  221 (279)
T ss_pred             HHHHh-----C-C--CCHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHcCCeecceeecHHHHHHHHHHHHHHHHHHHHH
Confidence            54321     2 2  23233344445567887777777889999999999999999999998887665444333332222


Q ss_pred             HHHHhhhhhHHHHHHHHHHH-HHHHHHHHHHHccCCChhhHH-HHHHHhHHHH
Q 016056          335 AGATSTLMISKLVTIIGHII-LALMMWLRSRKVDLDNFDSQF-GFYMFLWQLN  385 (396)
Q Consensus       335 ~g~~~~~~~~~~~~~~g~~i-~~~~l~~~~~~~d~~~~~~~~-~f~~~iw~l~  385 (396)
                      .+. ...+   ..+.++..+ .+..+..+.+..+.++++.++ .|...+|.+.
T Consensus       222 ~~~-~~~g---~~y~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~s~~~l~  270 (279)
T PRK12869        222 LYL-YYIG---LIGLILVAILSAALMATSIRALLNPTKEEAWKMFKASSPYLA  270 (279)
T ss_pred             HHH-hhcc---HHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHH
Confidence            222 2222   334433332 233455556666655555443 3444444443

>PRK04375 protoheme IX farnesyltransferase; Provisional

Probab=100.00  E-value=4e-31  Score=258.18  Aligned_cols=265  Identities=13%  Similarity=0.053  Sum_probs=183.8

Q ss_pred             HHHHHHHHhhccchHHHHHHHHHHHHHhhcccCCCCchHHHHHHHHHHHHHHHHHHHHhhhhhhhchhhhhccC--CCCc
Q 016056           98 RKLNAISHVTRYYAQINIIVSVTSVCFLPVQSLSQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDVEIDKINK--PYLP  175 (396)
Q Consensus        98 ~~l~~~~~l~Rp~~~~~~~l~~l~g~llA~~~~~~~~~~~l~~~ll~~l~~~l~~~a~~~iNd~~D~e~D~~n~--p~RP  175 (396)
                      +++++|+|++||+++....++++.|.++|.+.  ..++..   +++++++.+++++++|++|||+|+|+|++|+  |+||
T Consensus         8 ~~~~~y~~L~rp~~~~~~~~~~~~G~~la~~~--~~~~~~---~~l~~l~~~l~~aa~~~iNd~~D~~iD~~~~Rt~~Rp   82 (296)
T PRK04375          8 ATLKDYLALTKPRVISLNLFTALGGMLLAPPG--VPPLLL---LLLTLLGIALVAGAAGALNNYIDRDIDAKMERTKNRP   82 (296)
T ss_pred             hhHHHHHHHhHHHHHHHHHHHHHHHHHHhcCC--CCCHHH---HHHHHHHHHHHHHHHHHHHhHHhhccCCCCCccCCCC
Confidence            57999999999999999999999999998543  223322   4557788999999999999999999999988  5999


Q ss_pred             cccCccCHHHHHHHHHHHHHHHHHHHHH-hcHHHHHHHHHHHHHHhheecCCCCccCccccCchhHHHHHHHHH-HHHHH
Q 016056          176 LASGELSMGTGIAICAGSALLSLALAFL-SGSPAVLCAVIAWGLTGAAYSVPLPFLRWKSHTFMAPFTLVILMG-LILQI  253 (396)
Q Consensus       176 l~sG~ls~~~a~~~~~~~~~l~l~l~~~-lg~~~l~l~l~~~~~l~~~Ys~~lpp~rlKr~~~~g~l~vg~~~g-~~~~l  253 (396)
                      +++|++|+++++.+++++.++|+.+++. .|+.+..++.+......++||.     ++||+++ ++..++...| .++..
T Consensus        83 l~sG~is~~~a~~~~~~l~~~g~~l~~~l~~~~~~~l~~~~~~~~~~~Ys~-----~lKr~~~-~~~~v~~~~g~~~~l~  156 (296)
T PRK04375         83 LVTGRISPREALIFGLVLGVLGFLLLGLFVNPLAAWLTLAGIFFYVVVYTL-----WLKRRTP-QNIVIGGAAGAMPPLI  156 (296)
T ss_pred             CCCCCcCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcc-----chhcCCc-cchHHHHHHHHhHHHH
Confidence            9999999999999999999899888654 5665554443222334668986     4899995 5655555544 66666


Q ss_pred             HHHHHhhhhhhCCCCCChHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHcCCccchhhhccccHHHHHHHHHHHHHHHHH
Q 016056          254 PYFIHSQTYLLGKPFEVTGPFVFATAIMSIYAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKVLPLCVNMMLLGYGGAV  333 (396)
Q Consensus       254 g~~~~~~~~l~g~~~~~~~~~~~~~~~~~l~~~~~~~~~d~~D~egD~~~G~~Tlpv~lG~~~a~~l~~~l~~~ay~~~~  333 (396)
                      |+.+..     | .  .+...+++.+...+|....+..++++|+|||+++|+||+|+++|++++++.......+.....+
T Consensus       157 g~~a~~-----g-~--~~~~~~~l~~~~~lw~~~~~~~~~~~d~~D~~~~G~~tlpv~~G~~~~~~~~~~~~~~~~~~~~  228 (296)
T PRK04375        157 GWAAVT-----G-S--LSWEALILFLIIFLWTPPHFWALAIFRKDDYAAAGIPMLPVVKGIRVTKRQILLYTVLLVAVSL  228 (296)
T ss_pred             HHHHhC-----C-C--CCHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHcCCCccceeeCHHHHHHHHHHHHHHHHHHHH
Confidence            665421     2 2  2333344455567888888999999999999999999999999999887765433322222222


Q ss_pred             HHHHHhhhhhHHHHHHH-HHHHHHHHHHHHHHHccCCChhhH-HHHHHHhHHH
Q 016056          334 VAGATSTLMISKLVTII-GHIILALMMWLRSRKVDLDNFDSQ-FGFYMFLWQL  384 (396)
Q Consensus       334 ~~g~~~~~~~~~~~~~~-g~~i~~~~l~~~~~~~d~~~~~~~-~~f~~~iw~l  384 (396)
                      +.......++   .+.+ +.......+.++.+..+.+|++.+ +.|+...|.+
T Consensus       229 ~~~~~~~~~~---~y~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~F~~s~~~~  278 (296)
T PRK04375        229 LPVLLGMAGL---LYLVVALLLGAWFLYYAWRLYRKDDRKWARKLFRYSINYL  278 (296)
T ss_pred             HHHHHhccCH---HHHHHHHHHHHHHHHHHHHHhcCcCHHHHHHHHHHHHHHH
Confidence            2111111222   2222 233334455666777777666544 4555555444

>PRK12883 ubiA prenyltransferase UbiA-like protein; Reviewed

Probab=100.00  E-value=5.5e-31  Score=254.97  Aligned_cols=205  Identities=22%  Similarity=0.249  Sum_probs=161.1

Q ss_pred             HHHHHHHhhccchHHHHHHHHHHHHHhhcccCCCCchHHHHHHHHHHHHHHHHHHHHhhhhhhhchhhhhccCCCCcccc
Q 016056           99 KLNAISHVTRYYAQINIIVSVTSVCFLPVQSLSQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDVEIDKINKPYLPLAS  178 (396)
Q Consensus        99 ~l~~~~~l~Rp~~~~~~~l~~l~g~llA~~~~~~~~~~~l~~~ll~~l~~~l~~~a~~~iNd~~D~e~D~~n~p~RPl~s  178 (396)
                      ++|+|+|++||+++..+.++.+.|.+++.+..++  +..   .++.+++.++.++++|++|||+|+|+|++|+|+||+++
T Consensus         2 ~l~~~~~l~Rp~~~~~~~~~~~~G~~la~~~~~~--~~~---~~l~~~~~~~~~~a~~~~Nd~~D~~~D~~n~~~Rpl~s   76 (277)
T PRK12883          2 ELKAFIEITRPHNCILAGIVGILGSLVALGGIPP--IKT---LILIFLVVYLGCSGGNTINDYFDYEIDKINRPNRPLPR   76 (277)
T ss_pred             CHHHHHHHHhhhHHHHHHHHHHHHHHHHcCCCCc--HHH---HHHHHHHHHHHHHHHhHHHhhhhHhccccCCCCCCCCC
Confidence            3689999999999999999989999887543222  211   34456778888999999999999999999999999999


Q ss_pred             CccCHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHhheecCCCCccCccccCchhHHHHHHHHHHHHHHHHHHH
Q 016056          179 GELSMGTGIAICAGSALLSLALAFLSGSPAVLCAVIAWGLTGAAYSVPLPFLRWKSHTFMAPFTLVILMGLILQIPYFIH  258 (396)
Q Consensus       179 G~ls~~~a~~~~~~~~~l~l~l~~~lg~~~l~l~l~~~~~l~~~Ys~~lpp~rlKr~~~~g~l~vg~~~g~~~~lg~~~~  258 (396)
                      |++++++++.+++++.++|+.+++.+|++.+.++ +++.+++++|+.     ++|++++++|+.+|..+|..+..|+...
T Consensus        77 G~is~~~a~~~~~~l~~~g~~l~~~~~~~~~~~~-~~~~~~~~~Y~~-----~~k~~~~lg~~~vg~~~g~~~~~g~~a~  150 (277)
T PRK12883         77 GAMSRKAALYYSLLLFAVGLALAYLINIEAFLFA-LGAYVLMFLYAW-----KLKPLPFIGNVVVALLTGATPIYGAIAV  150 (277)
T ss_pred             CccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhh-----cccCCcchhhHHHHHHHHHHHHHHHHHh
Confidence            9999999999999999999988888888776555 356677899997     5789888899999998885444554321


Q ss_pred             hhhhhhCCCCCChHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHcCCccchhhhccccHHHHHHHH
Q 016056          259 SQTYLLGKPFEVTGPFVFATAIMSIYAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKVLPLCVNM  324 (396)
Q Consensus       259 ~~~~l~g~~~~~~~~~~~~~~~~~l~~~~~~~~~d~~D~egD~~~G~~Tlpv~lG~~~a~~l~~~l  324 (396)
                            +.   .+...+. ..+..++.+++++.||++|+|+|+++|+||+|+++|+++++++....
T Consensus       151 ------~~---~~~~~~~-~~~~fl~~~~~~~~~~~~D~e~D~~~G~~Tlpv~~G~~~a~~~~~~~  206 (277)
T PRK12883        151 ------GR---IGLAGYL-AICAFLVNVAREIMKDIEDIEGDKAKGAKTLPIIIGKKRAAYIGAIF  206 (277)
T ss_pred             ------cc---ccHHHHH-HHHHHHHHHHHHHHhhhhhhccHHHcCCcCcChHhcHHHHHHHHHHH
Confidence                  21   1212121 12234566778899999999999999999999999999988865443

>PRK13595 ubiA prenyltransferase; Provisional

Probab=100.00  E-value=5.4e-31  Score=253.79  Aligned_cols=260  Identities=19%  Similarity=0.173  Sum_probs=182.4

Q ss_pred             HHHHHHHHhhccchHHHHHHHHHHHHHhhcccCCCCch--HHHHHHHHHHHHHHHHHHHHhhhhhhhchhhhhccCCCCc
Q 016056           98 RKLNAISHVTRYYAQINIIVSVTSVCFLPVQSLSQVTP--AFLLGVLKAVVAQIFMNISLCSLNQICDVEIDKINKPYLP  175 (396)
Q Consensus        98 ~~l~~~~~l~Rp~~~~~~~l~~l~g~llA~~~~~~~~~--~~l~~~ll~~l~~~l~~~a~~~iNd~~D~e~D~~n~p~RP  175 (396)
                      ..++.+++++||.+|+.+..++.+|...+.+.   +++  ..   ++++++.....+.+.|.+|||+|+|+|++|+|+||
T Consensus        10 ~~l~~ll~~sRP~~wi~t~~~~~~G~~~~g~~---~~~~~~~---~~l~~~~~~p~n~~~~giND~fD~eiDa~Npr~~~   83 (292)
T PRK13595         10 LPLRRLLLISRPALWVNTVGTLVTGVWLTGHL---YTLDPGV---LPLLLYLTLPFNLLIYGLNDLADRETDAASPRKGG   83 (292)
T ss_pred             hHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCc---ccchhHH---HHHHHHHHHHHHHHHHHHHhhhhhhhhccCCCCCC
Confidence            55778999999999999999999999776432   233  22   33455666788899999999999999999999999


Q ss_pred             cccCccCHHHHHHHHHHHHHH----HHHHHHHhcHHHHHHHHHHHHHHhheecCCCCccCccccCchhHHHHHHHHHHHH
Q 016056          176 LASGELSMGTGIAICAGSALL----SLALAFLSGSPAVLCAVIAWGLTGAAYSVPLPFLRWKSHTFMAPFTLVILMGLIL  251 (396)
Q Consensus       176 l~sG~ls~~~a~~~~~~~~~l----~l~l~~~lg~~~l~l~l~~~~~l~~~Ys~~lpp~rlKr~~~~g~l~vg~~~g~~~  251 (396)
                      +++|++|+++++.+..++.++    ++.+++..|+..+.+. +++.+++++||.  ||+|+|+++++++++. ..+|.+.
T Consensus        84 i~~G~is~~~~~~~~~~~~~~~~~~~l~la~~l~~~~~~l~-~v~~~l~~~YS~--pPlRlK~rp~l~~l~~-~~~g~p~  159 (292)
T PRK13595         84 WQGARLSPGEVRPLLRAVLLLNAPFLLYLALLLPPAATLLL-LLYAALFVGYSL--PPLRFKARPFLDGLSN-AAYALPL  159 (292)
T ss_pred             CCcCccCHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHHHHcc--CccchhcCcchhHHHH-HHHHHHH
Confidence            999999999998865444333    4556677777665554 467789999999  9999999999988876 3455444


Q ss_pred             HHHHHHHhhhhhhCCCCCChHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHcCCccchhhhccccHHHHHHHHHHHHHHH
Q 016056          252 QIPYFIHSQTYLLGKPFEVTGPFVFATAIMSIYAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKVLPLCVNMMLLGYGG  331 (396)
Q Consensus       252 ~lg~~~~~~~~l~g~~~~~~~~~~~~~~~~~l~~~~~~~~~d~~D~egD~~~G~~Tlpv~lG~~~a~~l~~~l~~~ay~~  331 (396)
                      ..+.      .+.|..   ..+..+  ....+|..+++++++++|+|+||+.|+||+|+++|+|++.+++..++.++...
T Consensus       160 ~~~~------~~~g~~---~~~~~l--~a~~~w~~g~dii~ai~DiegDr~~Gi~Slpv~lG~r~a~~~a~~~~~~a~~~  228 (292)
T PRK13595        160 ALPA------LALGAP---VPWPPL--LALMAWSVGKHAFDAAQDIPADRAAGTRTVATTLGVRGTALYALAWFLLAGAL  228 (292)
T ss_pred             HHHH------HHcCCc---chHHHH--HHHHHHHHHHHHHHhccChHhHHHcCCeechHHhCcHhHHHHHHHHHHHHHHH
Confidence            3332      122321   112222  33357889999999999999999999999999999999999887766555433


Q ss_pred             HHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHccCCChhhHHHHHHHhHHHHHHH
Q 016056          332 AVVAGATSTLMISKLVTIIGHIILALMMWLRSRKVDLDNFDSQFGFYMFLWQLNYVE  388 (396)
Q Consensus       332 ~~~~g~~~~~~~~~~~~~~g~~i~~~~l~~~~~~~d~~~~~~~~~f~~~iw~l~~~~  388 (396)
                      .....  .+..   +...+.....+..++     .|.+.++.-+.|..|+|--+...
T Consensus       229 ~~~~~--~~~~---~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~g  275 (292)
T PRK13595        229 LWPVS--RLTA---LALWLICGGMALALW-----RRPTPETAHRLYPLSIVTPWIVG  275 (292)
T ss_pred             HHHhc--chHH---HHHHHHHHHHHHHHh-----cCCCHHHHhccchHHHHHhHHHH
Confidence            22211  1111   111122222222222     56666666777778777654443

>PRK06080 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Validated

Probab=100.00  E-value=1.4e-30  Score=253.96  Aligned_cols=230  Identities=17%  Similarity=0.146  Sum_probs=176.6

Q ss_pred             HHHHHHHhhccchHHHHHHHHHHHHHhhcccCCCCchHHHHHHHHHHHHHHHHHHHHhhhhhhhch--hhhh--ccCCCC
Q 016056           99 KLNAISHVTRYYAQINIIVSVTSVCFLPVQSLSQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDV--EIDK--INKPYL  174 (396)
Q Consensus        99 ~l~~~~~l~Rp~~~~~~~l~~l~g~llA~~~~~~~~~~~l~~~ll~~l~~~l~~~a~~~iNd~~D~--e~D~--~n~p~R  174 (396)
                      .++.|++++||+++..++++++.|.++|... ..+++..   +++++++.+++++++|.+|||+|+  |.|+  .++|+|
T Consensus         2 ~~~~~~~~~Rp~~~~~~~~p~l~G~~~a~~~-~~~~~~~---~ll~~l~~~l~~~~~n~~Ndy~D~~~g~D~~~~~~~~r   77 (293)
T PRK06080          2 TFKAWLELARPKTLPAAFAPVLVGTALAYWL-GSFHPLL---ALLALLAALLLQIATNLANDYGDYVKGTDTEDRVGPLR   77 (293)
T ss_pred             CHHHHHHHhhHHHHHHHHHHHHHHHHHHHHc-CCccHHH---HHHHHHHHHHHHHHHHHHHhHHHhccCCCcccccCCcc
Confidence            3688999999999999999999999988542 3345432   456778899999999999999998  5675  456799


Q ss_pred             ccccCccCHHHHHHHHHHHHHHHHHHHH----HhcHHHHHHHHHHHHHHhheecCCCCccCccccCchhHHHHHHHHHHH
Q 016056          175 PLASGELSMGTGIAICAGSALLSLALAF----LSGSPAVLCAVIAWGLTGAAYSVPLPFLRWKSHTFMAPFTLVILMGLI  250 (396)
Q Consensus       175 Pl~sG~ls~~~a~~~~~~~~~l~l~l~~----~lg~~~l~l~l~~~~~l~~~Ys~~lpp~rlKr~~~~g~l~vg~~~g~~  250 (396)
                      |+++|++|+++++.++.++.+++++++.    ..+++.+.++ +++.+++++||.  ||.++|+++ +||+.+++.+|..
T Consensus        78 ~l~~G~is~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~-~~~~~~~~~Ys~--~p~~~~~~g-lge~~~~~~~G~~  153 (293)
T PRK06080         78 AIGRGGISPKQVKRAAIAFFGLAALLGLYLVAVSGWWLLLLG-LLCIAAAILYTG--GPKPYGYTG-LGELFVGVFFGLV  153 (293)
T ss_pred             cccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHhhhhcC--CCCccCCCC-cHHHHHHHHHHHH
Confidence            9999999999999888777666555443    3355444443 457778899999  898999988 6999999989855


Q ss_pred             HHHHHHHHhhhhhhCCCCCChHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHcCCccchhhhccccHHHHHHHHHHHHHH
Q 016056          251 LQIPYFIHSQTYLLGKPFEVTGPFVFATAIMSIYAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKVLPLCVNMMLLGYG  330 (396)
Q Consensus       251 ~~lg~~~~~~~~l~g~~~~~~~~~~~~~~~~~l~~~~~~~~~d~~D~egD~~~G~~Tlpv~lG~~~a~~l~~~l~~~ay~  330 (396)
                      +..+.+..     ..+.  .+...++...+.++|+..+++.||++|+|+|++.|+||+|+++|+++++++...++.++|+
T Consensus       154 ~~~~~~~~-----~~~~--~~~~~~~~~l~~~l~~~~~~~~n~~~D~~~D~~~G~~Tl~v~lG~~~a~~~~~~l~~~~~~  226 (293)
T PRK06080        154 IVLGTYYL-----QAGT--VDSAVFLPALPCGLLIGAVLLANNIRDIETDRENGKNTLAVRLGDKNARRLHAALLALAYL  226 (293)
T ss_pred             HHHHHHHH-----hcCC--CCHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHcCCeeEEeeECcHhHHHHHHHHHHHHHH
Confidence            54443321     1111  2334445555667888899999999999999999999999999999999999999989888


Q ss_pred             HHHHHHHHhhhhh
Q 016056          331 GAVVAGATSTLMI  343 (396)
Q Consensus       331 ~~~~~g~~~~~~~  343 (396)
                      ..+........++
T Consensus       227 ~~~~~~~~~~~~~  239 (293)
T PRK06080        227 CIVLLALLGLASP  239 (293)
T ss_pred             HHHHHHHHhhhhH
Confidence            7665544443443

>PRK13362 protoheme IX farnesyltransferase; Provisional

Probab=99.98  E-value=2.8e-30  Score=252.75  Aligned_cols=206  Identities=19%  Similarity=0.224  Sum_probs=162.9

Q ss_pred             HHHHHHHHhhccchHHHHHHHHHHHHHhhcccCCCCchHHHHHHHHHHHHHHHHHHHHhhhhhhhchhhhhccCC--CCc
Q 016056           98 RKLNAISHVTRYYAQINIIVSVTSVCFLPVQSLSQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDVEIDKINKP--YLP  175 (396)
Q Consensus        98 ~~l~~~~~l~Rp~~~~~~~l~~l~g~llA~~~~~~~~~~~l~~~ll~~l~~~l~~~a~~~iNd~~D~e~D~~n~p--~RP  175 (396)
                      +++++|++++||+++..+.++++.|.++|..+  +.++..   +++++++.++.++++|++|||+|+|+|+.|+|  +||
T Consensus        11 ~~l~~~~~L~RP~~~~~~~~~~~~G~~la~~~--~~~~~~---~~~~~lg~~l~~aaa~~~Nd~~D~~iD~~~~Rt~~RP   85 (306)
T PRK13362         11 ASLKDYIQVTKPGIIFGNVISVAGGFFLASKG--HVDPVL---MLAAVIGLSLVVASGCALNNCIDRDIDAKMQRTRNRV   85 (306)
T ss_pred             HHHHHHHHHhCHHHHHHHHHHHHHHHHHHccC--CCCHHH---HHHHHHHHHHHHHHHHHHhChHHhCcCCCCCCCCCCC
Confidence            57899999999999999999999999988433  233322   34466788999999999999999999998764  899


Q ss_pred             cccCccCHHHHHHHHHHHHHHHHHHH-HHhcHHHHHHHHHHHHHHhheecCCCCccCccccCchhHHHHHHHHHHHHHHH
Q 016056          176 LASGELSMGTGIAICAGSALLSLALA-FLSGSPAVLCAVIAWGLTGAAYSVPLPFLRWKSHTFMAPFTLVILMGLILQIP  254 (396)
Q Consensus       176 l~sG~ls~~~a~~~~~~~~~l~l~l~-~~lg~~~l~l~l~~~~~l~~~Ys~~lpp~rlKr~~~~g~l~vg~~~g~~~~lg  254 (396)
                      +++|++|+++++.+++++.++|+.++ +..|+....++.+..++..++||.     ++||+++.++++.|+..+.++..|
T Consensus        86 lpsG~is~~~A~~~~~~l~~~g~~ll~~~~n~~~~~l~~~~~~~~~~~Yt~-----~lKr~t~~~~~vgg~~ga~p~l~G  160 (306)
T PRK13362         86 TVTGEISLGEALGFGLALGVAGFGLLAAFTNPLAALFAAFGYVVYVGVYSL-----YLKRNSVYGTLVGSLSGAMPPVVG  160 (306)
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhH-----HHhccCcHhHHHHHHHHHHHHHHH
Confidence            99999999999999999988888865 445765544432223345679995     389999999998888777888888


Q ss_pred             HHHHhhhhhhCCCCCChHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHcCCccchhhhccccHHHHH
Q 016056          255 YFIHSQTYLLGKPFEVTGPFVFATAIMSIYAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKVLPLC  321 (396)
Q Consensus       255 ~~~~~~~~l~g~~~~~~~~~~~~~~~~~l~~~~~~~~~d~~D~egD~~~G~~Tlpv~lG~~~a~~l~  321 (396)
                      +.+.      ++..  +...+++...+.+|+...+...+++|+|||+++|++|+|+++|++++++..
T Consensus       161 ~~a~------~g~~--~~~~~~l~~~~~~W~~~h~~~~ai~~~~Dy~~aG~~~lpv~~G~~~t~~~~  219 (306)
T PRK13362        161 YCAV------TGQF--DAGALILLLMFSLWQMPHSYAIAIFRFNDYAAAGIPVLPVARGIAKTKLHI  219 (306)
T ss_pred             HHHH------cCCC--cHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHCCCeeeceecChHHHHHHH
Confidence            7653      2222  233444456667899998889999999999999999999999999887743

>TIGR01473 cyoE_ctaB protoheme IX farnesyltransferase

Probab=99.98  E-value=3.7e-30  Score=249.54  Aligned_cols=263  Identities=15%  Similarity=0.071  Sum_probs=178.7

Q ss_pred             HHHHHhhccchHHHHHHHHHHHHHhhcccCCCCchHHHHHHHHHHHHHHHHHHHHhhhhhhhchhhhhccC--CCCcccc
Q 016056          101 NAISHVTRYYAQINIIVSVTSVCFLPVQSLSQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDVEIDKINK--PYLPLAS  178 (396)
Q Consensus       101 ~~~~~l~Rp~~~~~~~l~~l~g~llA~~~~~~~~~~~l~~~ll~~l~~~l~~~a~~~iNd~~D~e~D~~n~--p~RPl~s  178 (396)
                      |+|+|++||+++..+.++++.|.++|.+.. ..++..   +++++++.+++++++|++|||+|+|+|++|+  |+||+++
T Consensus         1 ~~~~~l~rp~~~~~~~~~~~~g~~la~~~~-~~~~~~---~~l~~~~~~l~~~a~~~~Nd~~D~~iD~~~~Rt~~Rpl~s   76 (280)
T TIGR01473         1 KDYLQLTKPRIISLLLITAFAGMWLAPGGA-LVNPPL---LLLTLLGTTLAAASANAFNMYIDRDIDKKMKRTRNRPLVT   76 (280)
T ss_pred             CchHHHccHHHHHHHHHHHHHHHHHhCCCC-CCCHHH---HHHHHHHHHHHHHHHHHHHhhcccCcCCCCCCCCCCCCCC
Confidence            469999999999999999999999985432 123322   4557788999999999999999999999987  5999999


Q ss_pred             CccCHHHHHHHHHHHHHHHHHH-HHHhcHHHHHHHHHHHHH-HhheecCCCCccCccccCchhHHHHHHHHHHHHHHHHH
Q 016056          179 GELSMGTGIAICAGSALLSLAL-AFLSGSPAVLCAVIAWGL-TGAAYSVPLPFLRWKSHTFMAPFTLVILMGLILQIPYF  256 (396)
Q Consensus       179 G~ls~~~a~~~~~~~~~l~l~l-~~~lg~~~l~l~l~~~~~-l~~~Ys~~lpp~rlKr~~~~g~l~vg~~~g~~~~lg~~  256 (396)
                      |++|++++..+++++.++|+.+ .+..|+....++. ++.+ ..++||.     .+||++..++++.++..+.++..|+.
T Consensus        77 G~is~~~a~~~~~~~~~~g~~il~~~~~~~~~~l~~-~~~~~~~~~Yt~-----~lKr~~~~~~~v~~~~g~~~~l~g~~  150 (280)
T TIGR01473        77 GRISPREALAFGLLLGVLGVAILAAFVNPLAALLGL-FGIFFYVIVYTI-----WLKRRTPQNTVIGGFAGAVPPLIGWA  150 (280)
T ss_pred             CCcCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHhhcCh-----hhccCCchhHHHHHHHHHHHHHHHHH
Confidence            9999999999999998888884 4457776655543 4444 3789995     27999976555544433355555544


Q ss_pred             HHhhhhhhCCCCCChHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHcCCccchhhhccccHHHHHHHHHHHHHHHHHHHH
Q 016056          257 IHSQTYLLGKPFEVTGPFVFATAIMSIYAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKVLPLCVNMMLLGYGGAVVAG  336 (396)
Q Consensus       257 ~~~~~~l~g~~~~~~~~~~~~~~~~~l~~~~~~~~~d~~D~egD~~~G~~Tlpv~lG~~~a~~l~~~l~~~ay~~~~~~g  336 (396)
                      +.      ++..  +...+++.....+|+........++|+|+|+++|+||+|+++|+|++.+..............+.+
T Consensus       151 a~------~g~~--~~~~~~l~~~~~~w~~~~~~~~a~~~~~dd~~~G~~tl~v~~G~~~a~~~~~~~~~~~~~~~~~~~  222 (280)
T TIGR01473       151 AV------TGSI--SLGAWLLFAIIFLWQPPHFWALALKYKDDYRAAGIPMLPVVKGERITKRQIALYTAALLPVSLLLA  222 (280)
T ss_pred             Hh------cCCC--CHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHCCCccCCcccCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            32      2222  323333444556787777777788999999999999999999999887765433322222222222


Q ss_pred             HHhhhhhHHHHHH-HHHHHHHHHHHHHHHHccCC-ChhhH-HHHHHHhHHH
Q 016056          337 ATSTLMISKLVTI-IGHIILALMMWLRSRKVDLD-NFDSQ-FGFYMFLWQL  384 (396)
Q Consensus       337 ~~~~~~~~~~~~~-~g~~i~~~~l~~~~~~~d~~-~~~~~-~~f~~~iw~l  384 (396)
                      .....++   .|. .+.......+.++.+..+.+ |++.+ +.|+...+.+
T Consensus       223 ~~~~~~~---~y~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~f~~s~~~~  270 (280)
T TIGR01473       223 FLGGTGW---LYLIVATLLGALFLYLAFKFYRDPTDRKKARKLFKFSLIYL  270 (280)
T ss_pred             HHhcccH---HHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH
Confidence            2222222   333 34444455667777777766 55433 4444444433

This model describes protoheme IX farnesyltransferase, also called heme O synthase, an enzyme that creates an intermediate in the biosynthesis of heme A. Prior to the description of its enzymatic function, this protein was often called a cytochrome o ubiquinol oxidase assembly factor.

>PRK13387 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional

Probab=99.98  E-value=7.8e-30  Score=250.91  Aligned_cols=232  Identities=12%  Similarity=0.038  Sum_probs=176.7

Q ss_pred             HHHHHHhhccchHHHHHHHHHHHHHhhcccCCCCchHHHHHHHHHHHHHHHHHHHHhhhhhhhchhhhhccC----CCCc
Q 016056          100 LNAISHVTRYYAQINIIVSVTSVCFLPVQSLSQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDVEIDKINK----PYLP  175 (396)
Q Consensus       100 l~~~~~l~Rp~~~~~~~l~~l~g~llA~~~~~~~~~~~l~~~ll~~l~~~l~~~a~~~iNd~~D~e~D~~n~----p~RP  175 (396)
                      ++.|++++||++...++++++.|.++|......+++..   ++++++++++.|+++|.+|||+|.+.|+.++    ++|+
T Consensus         3 ~~~~~~~~Rp~tl~~s~~pvllG~a~a~~~~~~~~~~~---~ll~ll~~~~~~~~~N~~NDy~D~~~g~D~~~~~~~~~~   79 (317)
T PRK13387          3 AKLFLKLVEIHTKIASFFPVILGTLFSLYVAKIFDWLL---FLAFMVAMLAFDIATTAINNYMDFKKALDTADYVGIGNG   79 (317)
T ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHHHHHhCCCccHHH---HHHHHHHHHHHHHHHHHHHhHHHHhcCCCcccccCCcch
Confidence            67899999999999999999999999865434566533   4567788899999999999999987666554    5799


Q ss_pred             cccCccCHHHHHHHHHHHHHHHHH----HHHHhcHHHHHHHHHHHHHHhheecCCCCccCccccCchhHHHHHHHHHHHH
Q 016056          176 LASGELSMGTGIAICAGSALLSLA----LAFLSGSPAVLCAVIAWGLTGAAYSVPLPFLRWKSHTFMAPFTLVILMGLIL  251 (396)
Q Consensus       176 l~sG~ls~~~a~~~~~~~~~l~l~----l~~~lg~~~l~l~l~~~~~l~~~Ys~~lpp~rlKr~~~~g~l~vg~~~g~~~  251 (396)
                      +++|.+++++++..+.++.+++.+    +.+..|+..+.++ +++.+.+++||.  ||+++||++ +||+.+++.+|..+
T Consensus        80 i~~~~ls~~~v~~~~~~~~~ia~~~Gl~L~~~~g~~~l~ig-l~g~~~~~~Yt~--gP~~l~y~g-LGe~~v~i~~G~~~  155 (317)
T PRK13387         80 IGQHGLKPRNVLTVILLMYVVAAILGVYLCMNTSWLLLVIG-LICFAIGILYTG--GPLPLSRMP-LGEIFSGLTMGFGI  155 (317)
T ss_pred             hccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHH-HHHHHHhhhhcC--CCcccccCc-cHHHHHHHHHHHHH
Confidence            999999999999888776666655    5555676555454 578889999999  999999999 79999999999655


Q ss_pred             HHHHHHHhhhhhhCCCCCCh--------------HH----HHHHHHHHHHHHHHHHHHHhCCChHHHHHcCCccchhhhc
Q 016056          252 QIPYFIHSQTYLLGKPFEVT--------------GP----FVFATAIMSIYAFVNGLLKDLPDVEGDKAFGMQTLCVLLG  313 (396)
Q Consensus       252 ~lg~~~~~~~~l~g~~~~~~--------------~~----~~~~~~~~~l~~~~~~~~~d~~D~egD~~~G~~Tlpv~lG  313 (396)
                      ..+.+.. ++    +...+.              ..    .++.....++.+..+++.||++|+|+|+++|+||+|+++|
T Consensus       156 v~g~~yv-~t----~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~slp~g~l~~~ill~Nn~~D~e~D~~~gk~TL~v~lG  230 (317)
T PRK13387        156 FLLAVYI-NT----NTITIESLLFQGEMFTIQGNLIAIIAIGVISLPIIFTIANIMLANNLRDLDEDIKNHRYTLVYYIG  230 (317)
T ss_pred             HHHHHHH-hc----CCCchHHHHhcccchhhcchhHHHHHHHHHHHHHHHHHHHHHHhcCCccchhHHHcCCeeeeeeEc
Confidence            5554432 11    111110              00    0112334455666789999999999999999999999999


Q ss_pred             cccHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 016056          314 KEKVLPLCVNMMLLGYGGAVVAGATSTLMI  343 (396)
Q Consensus       314 ~~~a~~l~~~l~~~ay~~~~~~g~~~~~~~  343 (396)
                      +|++.++...++..+|+..+........++
T Consensus       231 ~~~a~~l~~~l~~~a~l~~~~~v~~g~lp~  260 (317)
T PRK13387        231 REKGVVLFAILFYASYLAIAVIVLMGYISP  260 (317)
T ss_pred             HHhHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence            999999999999999987555443333343

>PRK12871 ubiA prenyltransferase; Reviewed

Probab=99.97  E-value=3.7e-28  Score=236.89  Aligned_cols=274  Identities=18%  Similarity=0.112  Sum_probs=177.1

Q ss_pred             HHHHHHHHhhccchHHHHHHHHHHHHHhhcccCCCCchHHHHHHHHHHHHHHHHHHHHhhhhhhhchhhhhcc-------
Q 016056           98 RKLNAISHVTRYYAQINIIVSVTSVCFLPVQSLSQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDVEIDKIN-------  170 (396)
Q Consensus        98 ~~l~~~~~l~Rp~~~~~~~l~~l~g~llA~~~~~~~~~~~l~~~ll~~l~~~l~~~a~~~iNd~~D~e~D~~n-------  170 (396)
                      +++++|++++||+++.....+++.|.++|......+++..   +++.++++.++..++|++|||+|+|.|+.|       
T Consensus         3 ~~~~~~~~l~Rp~~l~~~~~~~~~g~~lA~~~~g~~~~~~---~~l~~l~~~l~~~ag~~iND~~D~~~D~~~v~rtm~r   79 (297)
T PRK12871          3 ETLKAYIDLTRAHFLPAWPLLFCSGLVLAFANYGGFSWEL---TIKAALIGLFGFEAGFVLNDYVDRKRDRLDVENTLTR   79 (297)
T ss_pred             chHHHHHHHHhHHHHHHHHHHHHHHHHHHHHccCCCCHHH---HHHHHHHHHHHHHHHHHHhhHHHHhcCcchHhhhhhc
Confidence            4688999999999988887887788888742112234432   222334445555778999999999999865       


Q ss_pred             --C--CCCccccCccCHHHHHHHHHHHHHHHHHHHHHhcH----HHHHHHHHHHHHHhheecCCCCccCccccCc--hhH
Q 016056          171 --K--PYLPLASGELSMGTGIAICAGSALLSLALAFLSGS----PAVLCAVIAWGLTGAAYSVPLPFLRWKSHTF--MAP  240 (396)
Q Consensus       171 --~--p~RPl~sG~ls~~~a~~~~~~~~~l~l~l~~~lg~----~~l~l~l~~~~~l~~~Ys~~lpp~rlKr~~~--~g~  240 (396)
                        |  ++||+++|++|+++++.+++++.++|+.++..++.    ..+.++ +.+.++++.|+.      .||...  .+.
T Consensus        80 ~~~P~~~Rpl~sG~is~~~a~~~~i~l~~i~~~l~~~l~~~~~~~~~~l~-~~~~~~~~~Y~~------~kr~~~~p~~~  152 (297)
T PRK12871         80 YWRPFKERPIPSGKLSSKNAFALFILLAAVTSALILTLPYPNSLYVFVIM-LYSYGIEAFYQV------KKRNQKYPVAQ  152 (297)
T ss_pred             cccCCCCCccCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhc------ccccccccHHH
Confidence              3  48999999999999999999988888887666543    222222 345567778886      344321  233


Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhhhCCCCCChHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHcCCccchhhhccccHHHH
Q 016056          241 FTLVILMGLILQIPYFIHSQTYLLGKPFEVTGPFVFATAIMSIYAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKVLPL  320 (396)
Q Consensus       241 l~vg~~~g~~~~lg~~~~~~~~l~g~~~~~~~~~~~~~~~~~l~~~~~~~~~d~~D~egD~~~G~~Tlpv~lG~~~a~~l  320 (396)
                      +..++.++.++..|+ +.     .|.   .+...+....+..+|+.+++++||++|+|||++.|+||+|+++|++++++.
T Consensus       153 l~G~~~~~~~~~~g~-~~-----~g~---~~~~~~ll~~~~~~w~~~~~~~~a~~D~e~D~~~G~~Tlpv~~G~~~t~~~  223 (297)
T PRK12871        153 LLGRTDFTLFPAAGY-LC-----YGQ---PDMTALLYMVFFYPWTMAHLGLNDFIDLENDRARGMKSIAVLYGMKGTMYW  223 (297)
T ss_pred             HHHHHHHHHHHHHHH-HH-----hCC---CcHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHcCCeeeeeeechHHHHHH
Confidence            333344444444442 21     232   222334444566789999999999999999999999999999999988866


Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHccCCChhhHHHHHH--HhHHHHHHHHHHhhh
Q 016056          321 CVNMMLLGYGGAVVAGATSTLMISKLVTIIGHIILALMMWLRSRKVDLDNFDSQFGFYM--FLWQLNYVEYILIHF  394 (396)
Q Consensus       321 ~~~l~~~ay~~~~~~g~~~~~~~~~~~~~~g~~i~~~~l~~~~~~~d~~~~~~~~~f~~--~iw~l~~~~y~~~~~  394 (396)
                      ...+..+.....+  +.....++  ..+....++.+..+.+|.+..+.++++.|-+-|.  +.....|+.-+.+-|
T Consensus       224 i~~~~~l~~l~~~--~~~~~~g~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~  295 (297)
T PRK12871        224 VTGFTALHFLAAI--FFLRELGP--IALYGFLAGFVLLAGANLYLWKEKSQDAGMKILPLYHASLVIYAVSIILDF  295 (297)
T ss_pred             HHHHHHHHHHHHH--HHHHHhhH--HHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            5444444332222  22222332  2233333555667888888888888876644332  244555555555544

>PRK07419 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional

Probab=99.97  E-value=4.8e-28  Score=236.45  Aligned_cols=232  Identities=14%  Similarity=0.026  Sum_probs=176.4

Q ss_pred             HHHHHHHHHhhccchHHHHHHHHHHHHHhhcccCCCCchHHHHHHHHHHHHHHHHHHHHhhhhhhhchh--hhhccCCCC
Q 016056           97 KRKLNAISHVTRYYAQINIIVSVTSVCFLPVQSLSQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDVE--IDKINKPYL  174 (396)
Q Consensus        97 ~~~l~~~~~l~Rp~~~~~~~l~~l~g~llA~~~~~~~~~~~l~~~ll~~l~~~l~~~a~~~iNd~~D~e--~D~~n~p~R  174 (396)
                      +++++.|++.+||+++..+++++++|.++|+....++++..   +++++++++++|.++|.+|||+|++  .|+. +++ 
T Consensus         9 ~~~~~~w~~a~RP~tl~asl~pv~lG~a~a~~~~~~f~~~~---~ll~ll~~~l~q~~~N~~NDy~D~~~G~D~~-~~~-   83 (304)
T PRK07419          9 PSRRKLWLAAIKPPMYSVAIMPILVGTAWALGETGVFRLDQ---FITFLLAAILILAWENLSNDVFDADTGIDKN-KFH-   83 (304)
T ss_pred             ccHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHcCCCccHHH---HHHHHHHHHHHHHHHHHHHHHHHHhccCCcc-ccc-
Confidence            36788999999999999999999999999975444677543   4667899999999999999999987  6773 332 


Q ss_pred             ccccCccCHHHHHHHHHHHHHHHHH----HHHHhcHHHHHHHHHHHHHHhheecCCCCccCccccCchhHHHHHHHHHHH
Q 016056          175 PLASGELSMGTGIAICAGSALLSLA----LAFLSGSPAVLCAVIAWGLTGAAYSVPLPFLRWKSHTFMAPFTLVILMGLI  250 (396)
Q Consensus       175 Pl~sG~ls~~~a~~~~~~~~~l~l~----l~~~lg~~~l~l~l~~~~~l~~~Ys~~lpp~rlKr~~~~g~l~vg~~~g~~  250 (396)
                      ...++..+++++...+.++.++++.    +.+..|++.+.++ +++.+++++||.  ||+++|+++ +||+.+++.+|..
T Consensus        84 ~~~~~~~~~~~v~~~~~~~~~~a~~~Gl~L~~~~g~~~l~ig-~~g~~~~~~YT~--gP~~l~y~g-LGE~~v~l~~G~l  159 (304)
T PRK07419         84 SVVNLTGNKSLVFWLANLFLLLGLLGILAIALQSDWTVLGLV-LLCCFLGYLYQG--PPFRLGYQG-LGEPLCFLAFGPL  159 (304)
T ss_pred             CcccccCcHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHH-HHHHHHhheccC--CCcccCCCC-chHHHHHHHHHHH
Confidence            2445555788888777666555544    3444565544444 568889999999  999999999 6999999999966


Q ss_pred             HHHHHHHHhhhhhhCCCCCChHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHcCCccchhhhccccHHHHHHHHHHHHHH
Q 016056          251 LQIPYFIHSQTYLLGKPFEVTGPFVFATAIMSIYAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKVLPLCVNMMLLGYG  330 (396)
Q Consensus       251 ~~lg~~~~~~~~l~g~~~~~~~~~~~~~~~~~l~~~~~~~~~d~~D~egD~~~G~~Tlpv~lG~~~a~~l~~~l~~~ay~  330 (396)
                      +..+.+..     ..+  .++...+...+..++.+..+.+.||++|+|+|+++|+||+|+++|+++++++...+...+|+
T Consensus       160 ~v~g~~yv-----~t~--~~~~~~~~~sl~~gll~~~IL~~Nn~rD~e~D~~~Gk~TL~v~lG~~~a~~ly~~l~~~ay~  232 (304)
T PRK07419        160 AVAAALYS-----QTP--SWSLIPLAASIILGLATSLILFCSHFHQVEDDLAAGKRSPIVRLGTKRGAQLLPWIVGLIYA  232 (304)
T ss_pred             HHHHHHHH-----hcC--CCCHHHHHHHHHHHHHHHHHHHHcCCcchhhHHHcCCcceeeeechHhHHHHHHHHHHHHHH
Confidence            65655432     122  23434444445566778888999999999999999999999999999999999999989998


Q ss_pred             HHHHHHHHhhhhhH
Q 016056          331 GAVVAGATSTLMIS  344 (396)
Q Consensus       331 ~~~~~g~~~~~~~~  344 (396)
                      ..+........+|.
T Consensus       233 ~~i~~v~~g~~p~~  246 (304)
T PRK07419        233 LELLPVLLGFWPWT  246 (304)
T ss_pred             HHHHHHHHhhhHHH
Confidence            76554444334543

>PLN02922 prenyltransferase

Probab=99.97  E-value=9.8e-28  Score=235.50  Aligned_cols=236  Identities=17%  Similarity=0.137  Sum_probs=172.5

Q ss_pred             HHHHHHHHhhccchHHHHHHHHHHHHHhhcccCCCCchHHHHHHHHHHHHHHHHHHHHhhhhhhhchh--hhhccCCCCc
Q 016056           98 RKLNAISHVTRYYAQINIIVSVTSVCFLPVQSLSQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDVE--IDKINKPYLP  175 (396)
Q Consensus        98 ~~l~~~~~l~Rp~~~~~~~l~~l~g~llA~~~~~~~~~~~l~~~ll~~l~~~l~~~a~~~iNd~~D~e--~D~~n~p~RP  175 (396)
                      ++++.|++.+||+++..+++++++|.++|......+++..   +++++++++++|.++|.+|||+|.+  .|+.++..+.
T Consensus        13 ~~~~~w~~a~Rp~tl~~s~~pv~lG~a~A~~~~g~f~~~~---~ll~ll~~~l~q~~~N~~NDy~D~~~G~D~~~~~~~~   89 (315)
T PLN02922         13 SRATLWWRAIKLPMYSVALVPLTVGAAAAYLQTGLFDARR---YGTLLLSSVLVITWLNLSNDAYDADTGVDKNKKESVV   89 (315)
T ss_pred             cHHHHHHHHhCcchHHHHHHHHHHHHHHHHHcCCCccHHH---HHHHHHHHHHHHHHHHHHhhhhHhccCcCcccCCCCC
Confidence            4588899999999999999999999999975434667543   5668899999999999999999975  6764322212


Q ss_pred             cccCccCHHHHHHHHHHHHHHHHHHHH---H--hcHHHHHHHHHHHHHHhheecCCCCccCccccCchhHHHHHHHHHHH
Q 016056          176 LASGELSMGTGIAICAGSALLSLALAF---L--SGSPAVLCAVIAWGLTGAAYSVPLPFLRWKSHTFMAPFTLVILMGLI  250 (396)
Q Consensus       176 l~sG~ls~~~a~~~~~~~~~l~l~l~~---~--lg~~~l~l~l~~~~~l~~~Ys~~lpp~rlKr~~~~g~l~vg~~~g~~  250 (396)
                      -..|  +++++...++++.++++...+   .  .+++.+.++ +++++.+++||.  ||+++|+++ +||+.+++.+|..
T Consensus        90 ~~~~--s~~~v~~~~~~~~~la~~g~~ll~~~~~~~~~l~iG-~~g~~~~~~Yt~--gP~pl~y~g-LGE~~v~i~fG~l  163 (315)
T PLN02922         90 NLVG--SRRGVLAAAIGCLALGAAGLVWASLVAGNIRVILLL-AAAILCGYVYQC--PPFRLSYKG-LGEPLCFAAFGPL  163 (315)
T ss_pred             Cccc--CHHHHHHHHHHHHHHHHHHHHHHHHHccChHHHHHH-HHHHHHHHHHhc--CCcccccCc-chHHHHHHHHHHH
Confidence            2234  899988877666555543221   1  244444343 578889999999  999999999 6999999999966


Q ss_pred             HHHHHHHHhhhhhhCC-CC---CChHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHcCCccchhhhccccHHHHHHHHHH
Q 016056          251 LQIPYFIHSQTYLLGK-PF---EVTGPFVFATAIMSIYAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKVLPLCVNMML  326 (396)
Q Consensus       251 ~~lg~~~~~~~~l~g~-~~---~~~~~~~~~~~~~~l~~~~~~~~~d~~D~egD~~~G~~Tlpv~lG~~~a~~l~~~l~~  326 (396)
                      ++.+.+.. ++...+. ..   .++...++..+.+++++.++++.||++|+|+|++.|+||+|+++|+++++++...++.
T Consensus       164 ~v~g~y~~-~~~~~~~~~~~~~~~~~~~~l~slp~gll~~~iL~~Nn~rD~e~D~~~Gk~TL~v~lG~~~a~~l~~~l~~  242 (315)
T PLN02922        164 ATTAFYLA-LASGAGGSEMAILPLTPTVLSASVLVGLTTTLILFCSHFHQIDGDRAVGKMSPLVRLGTEKGSRVVRWAVL  242 (315)
T ss_pred             HHHHHHHH-hcccccccccccccccHHHHHHHHHHHHHHHHHHHHccCcchhhHHHcCccceeeEEChHHHHHHHHHHHH
Confidence            55665443 1110000 00   1233344455566788888999999999999999999999999999999999999998


Q ss_pred             HHHHHHHHHHHHhhhhh
Q 016056          327 LGYGGAVVAGATSTLMI  343 (396)
Q Consensus       327 ~ay~~~~~~g~~~~~~~  343 (396)
                      .+|+..+........++
T Consensus       243 ~~y~~~i~~v~~~~~p~  259 (315)
T PLN02922        243 LLYSLLAALGLLKALPL  259 (315)
T ss_pred             HHHHHHHHHHHHhhhhH
Confidence            99987665544443443

>KOG1381 consensus Para-hydroxybenzoate-polyprenyl transferase [Coenzyme transport and metabolism]

Probab=99.97  E-value=3.4e-30  Score=239.49  Aligned_cols=280  Identities=15%  Similarity=0.109  Sum_probs=206.3

Q ss_pred             hhhHHHHHHHHHHHHHhhccchHHHHHH---HHHHHHHhhcccCCCCchHHHHHHHHHHHHHHHHHHHHhhhhhhhchhh
Q 016056           90 PSFLEVVKRKLNAISHVTRYYAQINIIV---SVTSVCFLPVQSLSQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDVEI  166 (396)
Q Consensus        90 ~~~~~~~~~~l~~~~~l~Rp~~~~~~~l---~~l~g~llA~~~~~~~~~~~l~~~ll~~l~~~l~~~a~~~iNd~~D~e~  166 (396)
                      +++.+.-+.++++|.|++|.+.++++.+   ++....++|... . ..+.+ --+.++-++.+++++++|++||..|+|+
T Consensus        54 ss~~~~~p~r~~pYaqLmRldkPiGTwLLywPCtWSIamaAda-g-~~p~~-~mL~LFG~GAllMRgAGCtINDlwDkdl  130 (353)
T KOG1381|consen   54 SSLVASSPKRWKPYAQLMRLDKPIGTWLLYWPCTWSIAMAADA-G-LLPSI-KMLALFGVGALLMRGAGCTINDLWDKDL  130 (353)
T ss_pred             hhhhhcCCccchhHHHHHhcCCCceeeeeecchHHHHHhccCC-C-ccchh-HHHHHhcccHHHhccCCceehhhhhhhh
Confidence            3444444567999999999999999855   566777777532 1 11111 1123345788999999999999999999


Q ss_pred             hhccCC--CCccccCccCHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHhheecCCCCccCccccCchhHHHHH
Q 016056          167 DKINKP--YLPLASGELSMGTGIAICAGSALLSLALAFLSGSPAVLCAVIAWGLTGAAYSVPLPFLRWKSHTFMAPFTLV  244 (396)
Q Consensus       167 D~~n~p--~RPl~sG~ls~~~a~~~~~~~~~l~l~l~~~lg~~~l~l~l~~~~~l~~~Ys~~lpp~rlKr~~~~g~l~vg  244 (396)
                      |++.+|  .||+++|++|+++|+.+..+...+|+.+...+|+....++ ..++...+.|+.      +||.+++.+++.|
T Consensus       131 D~KVeRtklRPlAsG~ls~~qaI~fL~~ql~~gLgiLlqLn~ysi~lg-~~sl~~v~~ypl------~kr~TY~pq~vLg  203 (353)
T KOG1381|consen  131 DAKVERTKLRPLASGSLSPRQAIGFLGAQLSLGLGILLQLNWYSIALG-ASSLALVITYPL------MKRFTYWPQLVLG  203 (353)
T ss_pred             hhhHhhhcccccccCCcchhHHHHHHHHHHHHhHHHHHhccHHHHHhc-ccccccEEEeeh------hhhcchhHHHHHh
Confidence            999887  7999999999999999988888999998889998877655 456777889998      8999999999988


Q ss_pred             HHHHHHHHHHHHHHhhhhhhCCCCCChHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHcCCccchhhhccccHHHHHHHH
Q 016056          245 ILMGLILQIPYFIHSQTYLLGKPFEVTGPFVFATAIMSIYAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKVLPLCVNM  324 (396)
Q Consensus       245 ~~~g~~~~lg~~~~~~~~l~g~~~~~~~~~~~~~~~~~l~~~~~~~~~d~~D~egD~~~G~~Tlpv~lG~~~a~~l~~~l  324 (396)
                      .+++.-..+||-+.     -| ... +...+-+++--..|++.++++++++|.++|.+.|+++.+.++|++...|+.. +
T Consensus       204 ltfnwGAllGw~A~-----~g-~~~-~s~~~plYls~v~Wtl~YDTIYAHQDK~dDvk~gvkSTALrfG~nTK~wl~g-f  275 (353)
T KOG1381|consen  204 LTFNWGALLGWCAL-----KG-SLS-PSAVLPLYLSGVCWTLIYDTIYAHQDKRDDVKIGVKSTALRFGDNTKPWLSG-F  275 (353)
T ss_pred             hhcchhhhhcchhh-----cC-ccC-hhhhhHHHHhhhhhhhhhhhhhhcccchhhhHhcchhhhhhcCCCCchHHhh-h
Confidence            76654444454332     12 221 2112222333347899999999999999999999999999999998877753 2


Q ss_pred             HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHccCCChhhHHH-HHHHhHHHHHHHHH
Q 016056          325 MLLGYGGAVVAGATSTLMISKLVTIIGHIILALMMWLRSRKVDLDNFDSQFG-FYMFLWQLNYVEYI  390 (396)
Q Consensus       325 ~~~ay~~~~~~g~~~~~~~~~~~~~~g~~i~~~~l~~~~~~~d~~~~~~~~~-f~~~iw~l~~~~y~  390 (396)
                      -......+..+|..+...|   .+..++...+.++..|..++|+||+.+|.. |-.++|.++++.|-
T Consensus       276 ~a~~ia~La~aG~~s~q~~---pyy~~lg~~~~~L~~~i~~vdiDnp~dC~k~f~sN~ntGli~~~~  339 (353)
T KOG1381|consen  276 GAAQIASLAAAGIASDQTW---PYYAALGAVAARLGSQIYKVDIDNPSDCWKKFKSNSNTGLILFSG  339 (353)
T ss_pred             hHHHHHHHHHhhhccCCCc---hHHHHHHHHHHHHHhheeeeecCChHHHHHHHHhcCcchHHHHHH
Confidence            2222333455666666554   344557777889999999999999887655 44678888777664

>TIGR00751 menA 1,4-dihydroxy-2-naphthoate octaprenyltransferase

Probab=99.97  E-value=5e-28  Score=234.57  Aligned_cols=222  Identities=14%  Similarity=0.050  Sum_probs=168.3

Q ss_pred             ccchHHHHHHHHHHHHHhhcccCCCCchHHHHHHHHHHHHHHHHHHHHhhhhhhhchh--hhhc--cCCCCccccCccCH
Q 016056          108 RYYAQINIIVSVTSVCFLPVQSLSQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDVE--IDKI--NKPYLPLASGELSM  183 (396)
Q Consensus       108 Rp~~~~~~~l~~l~g~llA~~~~~~~~~~~l~~~ll~~l~~~l~~~a~~~iNd~~D~e--~D~~--n~p~RPl~sG~ls~  183 (396)
                      ||+++..++.++++|.++|.... .+++..   +++++++++++|.++|.+|||+|.+  .|+.  .+|.|++++|.+++
T Consensus         1 Rp~tl~~s~~pv~lG~ala~~~~-~f~~~~---~ll~~~~~~~~q~~~N~~NDy~D~~~G~D~~~~~~~~r~i~~g~is~   76 (284)
T TIGR00751         1 RPKTLPLAIAPIVAGTALAAWLH-AFVWLV---ALLALATAVLLQILSNYANDYGDGIKGSDTDDRIGPLRGVQKGLITP   76 (284)
T ss_pred             CCchHHHHHHHHHHHHHHHHHcC-CccHHH---HHHHHHHHHHHHHHHHHHHhHHHHhcCCChhhccCCcchhcCCCCCH
Confidence            89999999999999999996543 666543   5667889999999999999999984  3543  35789999999999


Q ss_pred             HHHHHHHHHHHHHHHHH----HHHhcH-----HHHHHHHHHHHHHhheecCCCCccCccccCchhHHHHHHHHHHHHHHH
Q 016056          184 GTGIAICAGSALLSLAL----AFLSGS-----PAVLCAVIAWGLTGAAYSVPLPFLRWKSHTFMAPFTLVILMGLILQIP  254 (396)
Q Consensus       184 ~~a~~~~~~~~~l~l~l----~~~lg~-----~~l~l~l~~~~~l~~~Ys~~lpp~rlKr~~~~g~l~vg~~~g~~~~lg  254 (396)
                      +++...+.++.++++++    .+..++     +.+.+..+++.+.+++||.  ||+++|+++ +||+.+++.+|..+..|
T Consensus        77 ~~v~~~~~~~~~~a~~~Gi~l~~~~~~~~~~~~~~l~lg~~~~~~~~~Yt~--gP~~l~y~g-LGE~~v~i~~G~l~v~g  153 (284)
T TIGR00751        77 REVKTALITSVALGALSGLVLALLAAPNLSDLFWFIALGALCIAAAITYTV--GSKPYGYAG-LGDISVLVFFGPLAVLG  153 (284)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcccchhhhHHHHHHHHHHHHHhHhhcC--CCCccccCc-hHHHHHHHHHHHHHHHH
Confidence            99998887666655444    333453     1332223567888999999  999999999 69999999999666666


Q ss_pred             HHHHhhhhhhCCCCCChHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHcCCccchhhhccccHHHHHHHHHHHHHHHHHH
Q 016056          255 YFIHSQTYLLGKPFEVTGPFVFATAIMSIYAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKVLPLCVNMMLLGYGGAVV  334 (396)
Q Consensus       255 ~~~~~~~~l~g~~~~~~~~~~~~~~~~~l~~~~~~~~~d~~D~egD~~~G~~Tlpv~lG~~~a~~l~~~l~~~ay~~~~~  334 (396)
                      .+..     ..+.  ++...++..+..++++.++++.||++|+|+|+++|+||+|+++|+|+++++...++..+|+..++
T Consensus       154 ~~yv-----q~~~--~~~~~ll~sl~~g~l~~~il~~Nn~~D~~~D~~~Gk~Tl~v~lG~~~a~~l~~~l~~~ay~~~~~  226 (284)
T TIGR00751       154 TQYL-----QAHR--VDWVGILPAVATGLLACAVLNINNLRDIPTDARAGKNTLAVRLGDARTRMYHQGLLAVAGVCTFV  226 (284)
T ss_pred             HHHH-----hcCC--CCHHHHHHHHHHHHHHHHHHHHcCcccchhHHHcCCEeehhhcchHhHHHHHHHHHHHHHHHHHH
Confidence            4432     1222  23333333444567778889999999999999999999999999999999998888888876555


Q ss_pred             HHHHhhhhh
Q 016056          335 AGATSTLMI  343 (396)
Q Consensus       335 ~g~~~~~~~  343 (396)
                      .......++
T Consensus       227 ~~~~~~~p~  235 (284)
T TIGR00751       227 FMLATPISW  235 (284)
T ss_pred             HHHHhhchH
Confidence            443333343

This membrane-associated enzyme converts 1,4-dihydroxy-2-naphthoic acid (DHNA) to demethylmenaquinone, a step in menaquinone biosynthesis.

>COG1575 MenA 1,4-dihydroxy-2-naphthoate octaprenyltransferase [Coenzyme metabolism]

Probab=99.96  E-value=7.5e-27  Score=224.01  Aligned_cols=281  Identities=17%  Similarity=0.092  Sum_probs=191.8

Q ss_pred             HHHHHHHHhhccchHHHHHHHHHHHHHhhcccCCCCchHHHHHHHHHHHHHHHHHHHHhhhhhhhchh--hhhc----cC
Q 016056           98 RKLNAISHVTRYYAQINIIVSVTSVCFLPVQSLSQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDVE--IDKI----NK  171 (396)
Q Consensus        98 ~~l~~~~~l~Rp~~~~~~~l~~l~g~llA~~~~~~~~~~~l~~~ll~~l~~~l~~~a~~~iNd~~D~e--~D~~----n~  171 (396)
                      ++.+.|++++||+++..++.+++.|.++|......+++.   ..+++++++.+++..+|..|||+|.+  .|..    .+
T Consensus         6 ~~~~~wl~~~rP~Tl~aai~Pv~~G~a~A~~~~~~f~~~---~~ll~Li~~~~iq~~vN~~NdY~D~~KG~D~~g~~~~~   82 (303)
T COG1575           6 SKTQLWLELARPKTLPAAIAPVIVGTALAFWYGKSFNLL---VALLALIAAILLQILVNLANDYFDYKKGTDTHGPDRLK   82 (303)
T ss_pred             HHHHHHHHhcCccchHHHHHHHHHHHHHHHHHccchHHH---HHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCCCcccc
Confidence            356889999999999999999999999997654455543   36778899999999999999999974  5642    22


Q ss_pred             CCCccccCccCHHHHHHHHHHHHHHHHH----HHHHhcHHHHHHHHHHHHHHhheecCCCCccCccccCchhHHHHHHHH
Q 016056          172 PYLPLASGELSMGTGIAICAGSALLSLA----LAFLSGSPAVLCAVIAWGLTGAAYSVPLPFLRWKSHTFMAPFTLVILM  247 (396)
Q Consensus       172 p~RPl~sG~ls~~~a~~~~~~~~~l~l~----l~~~lg~~~l~l~l~~~~~l~~~Ys~~lpp~rlKr~~~~g~l~vg~~~  247 (396)
                      .++-+...+++++..+...+.+...+.+    +....++.-+.++ +++.+.+++||.  +|+++++.| +||+.+++.+
T Consensus        83 ~~g~I~~~~~k~~~~l~l~l~~~~g~~llg~~~~~~s~~~~l~lG-~l~~~~g~~YTg--Gp~PlgY~g-LGEi~~~vff  158 (303)
T COG1575          83 QSGLIVRQSMKPALILSLALFLLAGLALLGVILAALSDWLVLLLG-LLCIAAGILYTG--GPFPLGYMG-LGEIFVGVFF  158 (303)
T ss_pred             ccceeecccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH-HHHHHheeeecc--CCcCcccCC-HHHHHHHHHH
Confidence            3556666677788777766554443333    3344555533333 578889999999  899999999 6999999999


Q ss_pred             HHHHHHHHHHHhhhhhhCCCCCChHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHcCCccchhhhccccHHHHHHHHHHH
Q 016056          248 GLILQIPYFIHSQTYLLGKPFEVTGPFVFATAIMSIYAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKVLPLCVNMMLL  327 (396)
Q Consensus       248 g~~~~lg~~~~~~~~l~g~~~~~~~~~~~~~~~~~l~~~~~~~~~d~~D~egD~~~G~~Tlpv~lG~~~a~~l~~~l~~~  327 (396)
                      |.....+.+.. +    .  ..++...++..+..++.+..++..||+||+|+|+++|++|+|+++|++.++.+...++..
T Consensus       159 G~l~v~g~~yi-q----t--~~~~~~~ll~slp~gil~~~Il~aNNirDie~D~~~gk~TLavrLG~~~~~~l~~~l~~~  231 (303)
T COG1575         159 GPLIVLGAYYI-Q----T--GRLSWAILLPSLPVGILIANILLANNLRDIEEDIRNGKYTLAVRLGRKNARKLYAALLVV  231 (303)
T ss_pred             HHHHHHHHHHH-h----c--ccchHHHHHHHHHHHHHHHHHHHhcccccchhHHhcCCcceeeeeccHhHHHHHHHHHHH
Confidence            96555554432 1    1  123333444445556677778999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHccCCC--hhhH--HHHHHHhHHHHHHHHHHhh
Q 016056          328 GYGGAVVAGATSTLMISKLVTIIGHIILALMMWLRSRKVDLDN--FDSQ--FGFYMFLWQLNYVEYILIH  393 (396)
Q Consensus       328 ay~~~~~~g~~~~~~~~~~~~~~g~~i~~~~l~~~~~~~d~~~--~~~~--~~f~~~iw~l~~~~y~~~~  393 (396)
                      +|++.++.......++..++. .-....+....++.++-+...  ...+  ....+.+|.+.++--+++-
T Consensus       232 a~l~~~~~~i~~~~~~~~ll~-ll~~Pl~ir~~r~v~~~~~~~~~~p~l~~~~~~~~~~~~l~~~~i~~~  300 (303)
T COG1575         232 AYLAIVIFVILGLFPVWGLLF-LLALPLAIRAARPVRQNQVPATLVPMLKNTVKANLLWNLLLAVGILLS  300 (303)
T ss_pred             HHHHHHHHHHHHhchHHHHHH-HHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            998765544444444443221 112222233333333222111  1122  2233458888877655543

>PRK13105 ubiA prenyltransferase; Reviewed

Probab=99.96  E-value=3.9e-27  Score=227.54  Aligned_cols=219  Identities=17%  Similarity=0.179  Sum_probs=152.1

Q ss_pred             HHHHHHhhccchHHHHHHHHHHHHHhhcccCCCCchHHHHHHHHHHHHHHHHHHHHhhhhhhhchhhhhccCCCCccccC
Q 016056          100 LNAISHVTRYYAQINIIVSVTSVCFLPVQSLSQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDVEIDKINKPYLPLASG  179 (396)
Q Consensus       100 l~~~~~l~Rp~~~~~~~l~~l~g~llA~~~~~~~~~~~l~~~ll~~l~~~l~~~a~~~iNd~~D~e~D~~n~p~RPl~sG  179 (396)
                      +|.+++++||.+|+.+.+++..|+++| ++.+  ++.++   +.++.-....+.+.|.+|||+|+|.|+.|++++.. .|
T Consensus         1 ~~~~~~~~rP~~wi~~a~pf~~g~~la-~~~~--~~~~l---~~~l~~~~~~n~am~~~Ndy~D~~~d~dn~r~~g~-~g   73 (282)
T PRK13105          1 IRQLLLSSRPISWINTAYPFAAAYLLA-GGEI--DWLFV---VGTVFFLIPYNLAMYGINDVFDYESDLRNPRKGGV-EG   73 (282)
T ss_pred             ChhHHHhcccHHHhccHHHHHHHHHHH-CCCC--ChHHH---HHHHHHHHHHHHHHHhhhhhhhhhcCCCCcccCCC-CC
Confidence            367899999999999999999999999 3322  23221   11112223444445666999999999999875443 58


Q ss_pred             ccCHHHHHHHHHHHHH-----HHHHHHHHhcHHHHHHHHHHHHHHhheecCCCCccCccccCchhHHHHHHHHHHHHHHH
Q 016056          180 ELSMGTGIAICAGSAL-----LSLALAFLSGSPAVLCAVIAWGLTGAAYSVPLPFLRWKSHTFMAPFTLVILMGLILQIP  254 (396)
Q Consensus       180 ~ls~~~a~~~~~~~~~-----l~l~l~~~lg~~~l~l~l~~~~~l~~~Ys~~lpp~rlKr~~~~g~l~vg~~~g~~~~lg  254 (396)
                      .++++++........+     .++.+....+++.+.++ .++++.++.||.  ||+|+|++++.++++.++.+..+..+|
T Consensus        74 ~i~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~l~-~~ai~~~~~YS~--~p~rlk~~gl~d~~t~~~~f~~~~v~G  150 (282)
T PRK13105         74 AVLDRAMHRTTLWASVVTTVPFLVVLLAVGSWASGLVL-AVSVFAVVAYSA--PGLRFKERPFLDSLTSSTHFVSPALYG  150 (282)
T ss_pred             ccCHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH-HHHHHHHHHhcC--CCccccccchHHHHHHHHHHHHHHHHH
Confidence            8999987444333222     23333333354444333 467888999999  999999999877765554443223444


Q ss_pred             HHHHhhhhhhCCCCCChHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHcCCccchhhhccccHHHHHHHHHHHHHHHHHH
Q 016056          255 YFIHSQTYLLGKPFEVTGPFVFATAIMSIYAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKVLPLCVNMMLLGYGGAVV  334 (396)
Q Consensus       255 ~~~~~~~~l~g~~~~~~~~~~~~~~~~~l~~~~~~~~~d~~D~egD~~~G~~Tlpv~lG~~~a~~l~~~l~~~ay~~~~~  334 (396)
                      .+.     + ++.  .+...++....+.+|+.+++++||+||+|+||+.|+||+|+++|+|++.+++..++.++++..+.
T Consensus       151 ~~~-----~-~~~--~~~~~~l~~~~~~~~~~a~~ii~~irDie~Dr~~G~~Tlpv~lG~~~a~~~~~~l~~~a~~~~~~  222 (282)
T PRK13105        151 LVL-----A-GAP--FTAALWAVLAAFFLWGMASHAFGAVQDVVADREAGIASIATVLGARRTVRLAVGLYAAAAVLMLA  222 (282)
T ss_pred             HHH-----h-hcc--ccHHHHHHHHHHHHHHHHHHHHHhCcchHhHHHcCCccchHHhcHHHHHHHHHHHHHHHHHHHHH
Confidence            322     2 322  23334444556678899999999999999999999999999999999999999988888877654


Q ss_pred             HH
Q 016056          335 AG  336 (396)
Q Consensus       335 ~g  336 (396)
                      .+
T Consensus       223 ~~  224 (282)
T PRK13105        223 LP  224 (282)
T ss_pred             HH
Confidence            33

>TIGR02235 menA_cyano-plnt 1,4-dihydroxy-2-naphthoate phytyltransferase

Probab=99.96  E-value=1.4e-26  Score=224.56  Aligned_cols=226  Identities=12%  Similarity=0.025  Sum_probs=166.9

Q ss_pred             HHHhhccchHHHHHHHHHHHHHhhcccCCCCchHHHHHHHHHHHHHHHHHHHHhhhhhhhchh--hhhccCCCCccccCc
Q 016056          103 ISHVTRYYAQINIIVSVTSVCFLPVQSLSQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDVE--IDKINKPYLPLASGE  180 (396)
Q Consensus       103 ~~~l~Rp~~~~~~~l~~l~g~llA~~~~~~~~~~~l~~~ll~~l~~~l~~~a~~~iNd~~D~e--~D~~n~p~RPl~sG~  180 (396)
                      |++.+||+++..+++++++|.++|+...+.+++..   ++++++++++.|.++|.+|||+|.+  .|+.+. . ...++.
T Consensus         2 w~~a~Rp~tl~~s~~pv~lG~alA~~~~~~f~~~~---~ll~li~~l~~q~~~N~~Ndy~D~~~G~D~~~~-~-~~~~~~   76 (285)
T TIGR02235         2 WLAAIKPPLYSVAVMPILVGTAVAWGQGGVFHLDR---FALFLIAAILILAWINLTNDVFDSDTGIDRFKL-H-SIVNLT   76 (285)
T ss_pred             hHHHhhhhHHHHHHHHHHHHHHHHHHcCCCcCHHH---HHHHHHHHHHHHHHHHHHHhHHHHhcCCCcccc-C-Cccccc
Confidence            67899999999999999999999975444667543   4567889999999999999999976  476422 1 222333


Q ss_pred             cCHHHHHHHHHHHHHHHHH----HHHHhcHHHHHHHHHHHHHHhheecCCCCccCccccCchhHHHHHHHHHHHHHHHHH
Q 016056          181 LSMGTGIAICAGSALLSLA----LAFLSGSPAVLCAVIAWGLTGAAYSVPLPFLRWKSHTFMAPFTLVILMGLILQIPYF  256 (396)
Q Consensus       181 ls~~~a~~~~~~~~~l~l~----l~~~lg~~~l~l~l~~~~~l~~~Ys~~lpp~rlKr~~~~g~l~vg~~~g~~~~lg~~  256 (396)
                      .+++++...+.++..++..    +.+..+++.+.++ +++++.++.||.  ||+++|+++ +||+.+++.+|..+..+.+
T Consensus        77 ~~~~~v~~~~~~~~~ia~~~g~~L~~~~~~~~l~lg-~~g~~~~~~Yt~--gP~~l~y~g-LGE~~v~l~~G~l~v~g~~  152 (285)
T TIGR02235        77 GSRSLVFWLANFFLLIGLVGIAALSWRWQITVLALV-GLCCFLGYLYQG--PPFRLGYQG-LGEPICWLCFGPLAIAAAL  152 (285)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH-HHHHHHHHhhcC--CCcccCCCC-ccHHHHHHHHHHHHHHHHH
Confidence            4567777666555544444    3444454433343 568889999999  999999999 5999999999965555544


Q ss_pred             HHhhhhhhCCCCCChHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHcCCccchhhhccccHHHHHHHHHHHHHHHHHHHH
Q 016056          257 IHSQTYLLGKPFEVTGPFVFATAIMSIYAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKVLPLCVNMMLLGYGGAVVAG  336 (396)
Q Consensus       257 ~~~~~~l~g~~~~~~~~~~~~~~~~~l~~~~~~~~~d~~D~egD~~~G~~Tlpv~lG~~~a~~l~~~l~~~ay~~~~~~g  336 (396)
                      ..     ..+  .++...++..+..++.+.++.+.||++|+|+|++.|+||+|+++|+|++.++...++..+|+..+...
T Consensus       153 yv-----qt~--~~~~~~~l~sl~~gl~~~~iL~~Nn~rD~e~D~~~Gk~TL~v~lG~~~a~~l~~~l~~~~y~~~i~~v  225 (285)
T TIGR02235       153 YA-----QSQ--SFSLIPWKASILVGLATTLILFCSHFHQVEDDLAHGKRSPVVRLGTKLAAKIVPWVISLSYVVLLIAV  225 (285)
T ss_pred             HH-----hCC--cCcHHHHHHHHHHHHHHHHHHHhcCCccchhHHHcCCcceeheecHHhHHHHHHHHHHHHHHHHHHHH
Confidence            32     122  23434444455667788889999999999999999999999999999999999999999998765544


Q ss_pred             HHhhhhhH
Q 016056          337 ATSTLMIS  344 (396)
Q Consensus       337 ~~~~~~~~  344 (396)
                      .....+|.
T Consensus       226 ~~~~~p~~  233 (285)
T TIGR02235       226 IGGFLPWT  233 (285)
T ss_pred             HHhhhHHH
Confidence            43334443

This family of phytyltransferases, found in plants and cyanobacteria, are involved in the biosythesis of phylloquinone (Vitamin K1). Phylloquinone is a critical component of photosystem I. The closely related MenA enzyme from bacteria transfers a prenyl group (which only differs in the saturation of the isoprenyl groups) in the biosynthesis of menaquinone. Activity towards both substrates in certain organisms should be considered a possibility.

>PRK12872 ubiA prenyltransferase; Reviewed

Probab=99.95  E-value=5.1e-26  Score=220.88  Aligned_cols=221  Identities=20%  Similarity=0.243  Sum_probs=153.8

Q ss_pred             HHHHHHHHhhccchHHHHHHHHHHHHHhhcccCCCCchHHHHHHHHHHHHHHHHHHHHhhhhhhhchhhhhccCCCCccc
Q 016056           98 RKLNAISHVTRYYAQINIIVSVTSVCFLPVQSLSQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDVEIDKINKPYLPLA  177 (396)
Q Consensus        98 ~~l~~~~~l~Rp~~~~~~~l~~l~g~llA~~~~~~~~~~~l~~~ll~~l~~~l~~~a~~~iNd~~D~e~D~~n~p~RPl~  177 (396)
                      +-+++++++.|+.+......++..+......  .+...     .....++.++.+.++|++|||+|+|+|++|+|+||.+
T Consensus         2 ~~~~~~~~~~~~~~~~~a~~~~~l~~~~~~~--~~~~~-----~~~~~~~~~~~~~~~~~~N~~~D~~~D~~n~~~R~~~   74 (285)
T PRK12872          2 KLLFAFLKLFRYGNLLIAALGQSLVYMASLL--LGLPI-----SWLLLLITFLIAAAVYIINYLTDLEEDIINKPERVVF   74 (285)
T ss_pred             hHHHHHHHHHHHccHHHHHHHHHHHHHHHHH--HcChh-----HHHHHHHHHHHHHHHHHhhhhcCCchhhcCCCchHHH
Confidence            3468999999999988877666554321100  11111     2235567889999999999999999999999999988


Q ss_pred             cCccCHHHHHHHHHHHHHHHHHHH-HHhcHHHHHHHHHHHHHHhheecCCCCcc-CccccCchhHHHHHHHHH-HHHHHH
Q 016056          178 SGELSMGTGIAICAGSALLSLALA-FLSGSPAVLCAVIAWGLTGAAYSVPLPFL-RWKSHTFMAPFTLVILMG-LILQIP  254 (396)
Q Consensus       178 sG~ls~~~a~~~~~~~~~l~l~l~-~~lg~~~l~l~l~~~~~l~~~Ys~~lpp~-rlKr~~~~g~l~vg~~~g-~~~~lg  254 (396)
                      +++...+.+..+..+...+++.+. ...|++.+.++ +++.++++.||.  ||. ++||.|.++|+++|..+| .++..+
T Consensus        75 s~~~~~~~~~~l~~i~~~~~~~l~~~~~~~~~~~~~-~~~~~~~~~Ys~--~~~~~lk~~p~~~~~~vg~~~g~~~~~~~  151 (285)
T PRK12872         75 SETKAYGLFLLLNVLGLYLGAYLLAVIGGPKFALIF-IIPLILGILYSV--FFKRRLKRIPLFKNLVVSLLWALSPLILG  151 (285)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHH-HHHHHHHHHHhC--hhHHHHhhhhhHhhHHHHHHHHHHHHHHH
Confidence            554444443333334444444442 23366655444 456778999998  555 589999999999999999 444444


Q ss_pred             HHHHhhhhhhCCCCCChHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHcCCccchhhhccccHHHHHHHHHHHHHHHHHH
Q 016056          255 YFIHSQTYLLGKPFEVTGPFVFATAIMSIYAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKVLPLCVNMMLLGYGGAVV  334 (396)
Q Consensus       255 ~~~~~~~~l~g~~~~~~~~~~~~~~~~~l~~~~~~~~~d~~D~egD~~~G~~Tlpv~lG~~~a~~l~~~l~~~ay~~~~~  334 (396)
                      ++..      +..  ++...+....+++++.+.++.++|++|+|+|+++|++|+|+++|+|+++++...+..+++...+.
T Consensus       152 ~~~~------~~~--~~~~~~~~~~~~fl~~~~~~~~~d~~D~e~D~~~G~~Tlpv~lG~~~t~~~~~~~~~~~~~~~~~  223 (285)
T PRK12872        152 VYYY------QLT--IFSLLLLYAVFIFLKSFIREIVFDIKDIEGDRKSGLKTLPIVLGKERTLKFLLILNLLFLILLIL  223 (285)
T ss_pred             HHhc------ccc--cchHHHHHHHHHHHHHHHHHHHHhcccchhHHHcCCcccchhcchHHHHHHHHHHHHHHHHHHHH
Confidence            4331      111  22233333344556677889999999999999999999999999999999988888777766554


Q ss_pred             HH
Q 016056          335 AG  336 (396)
Q Consensus       335 ~g  336 (396)
                      ..
T Consensus       224 ~~  225 (285)
T PRK12872        224 GV  225 (285)
T ss_pred             HH
Confidence            43

>COG0109 CyoE Polyprenyltransferase (cytochrome oxidase assembly factor) [Posttranslational modification, protein turnover, chaperones]

Probab=99.95  E-value=1.8e-26  Score=220.95  Aligned_cols=267  Identities=15%  Similarity=0.188  Sum_probs=182.9

Q ss_pred             HHHHHHHHHHhhccchHHHHHHHHHHHHHhhcccCCCCchHHHHHHHHHHHHHHHHHHHHhhhhhhhchhhhhccCC--C
Q 016056           96 VKRKLNAISHVTRYYAQINIIVSVTSVCFLPVQSLSQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDVEIDKINKP--Y  173 (396)
Q Consensus        96 ~~~~l~~~~~l~Rp~~~~~~~l~~l~g~llA~~~~~~~~~~~l~~~ll~~l~~~l~~~a~~~iNd~~D~e~D~~n~p--~  173 (396)
                      ..+++|+|++++||+......++.+.|+.+|.+.  ..++..   +++++++..+..++++++|+++|+|+|++++|  +
T Consensus        14 ~~~~~k~yl~LtKPrvi~L~~it~~~g~~lA~~~--~~~~~l---~~~~~~g~~L~a~~a~a~N~~~DrDID~~M~RT~~   88 (304)
T COG0109          14 SRSTIKDYLQLTKPRVISLLLITAFAGMLLAPRG--SINPLL---LLLTLLGGALGAGGAGAFNMYIDRDIDALMERTRK   88 (304)
T ss_pred             hHHHHHHHHHHhCCeeeehHHHHHHHHHHHcccc--cccHHH---HHHHHHHHHHHHHHHHHHhhhhhhhHHHhhhhccC
Confidence            3478999999999999999999999999999752  233332   45678899999999999999999999999987  8


Q ss_pred             CccccCccCHHHHHHHHHHHHHHHHHHH-HHhcHHHHHHHHHHHHHHhheecCCCCccCccccCchhHHHHHHHHH-HHH
Q 016056          174 LPLASGELSMGTGIAICAGSALLSLALA-FLSGSPAVLCAVIAWGLTGAAYSVPLPFLRWKSHTFMAPFTLVILMG-LIL  251 (396)
Q Consensus       174 RPl~sG~ls~~~a~~~~~~~~~l~l~l~-~~lg~~~l~l~l~~~~~l~~~Ys~~lpp~rlKr~~~~g~l~vg~~~g-~~~  251 (396)
                      ||+++|++++++++.+++++.++|+.+. +..|+.+..+++...++..++||.+     +||++.. |+++|..-| .|+
T Consensus        89 RP~~~G~i~p~~al~fgl~L~~~g~~~l~~~vn~laa~l~~~gi~~Yv~vYT~~-----lKR~T~~-NiviGg~aGa~Pp  162 (304)
T COG0109          89 RPLVTGLISPREALAFGLVLGVAGFSLLWFLVNLLAAVLGLFGIFFYVVVYTLW-----LKRRTPQ-NIVIGGFAGAMPP  162 (304)
T ss_pred             CCCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh-----ccCCccc-ceeeeeccccccc
Confidence            9999999999999999999999999887 6778776656554456678899995     7999965 556665555 888


Q ss_pred             HHHHHHHhhhhhhCCCCCChHHHHHHHHHH----HHHHHHHHHHHhCCChHHHHHcCCccchhhhccccHHHHHHHHHHH
Q 016056          252 QIPYFIHSQTYLLGKPFEVTGPFVFATAIM----SIYAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKVLPLCVNMMLL  327 (396)
Q Consensus       252 ~lg~~~~~~~~l~g~~~~~~~~~~~~~~~~----~l~~~~~~~~~d~~D~egD~~~G~~Tlpv~lG~~~a~~l~~~l~~~  327 (396)
                      .+||.+..     | ..++..+.++++.|+    ++|+++....+|+      +++|+.++|++-|++.+++.. ..+.+
T Consensus       163 liGwaAvt-----g-~~~~~a~~Lf~IiF~WtPpHfwALAl~~~~DY------~~AgiPMlPvv~G~~~t~~~I-~~y~~  229 (304)
T COG0109         163 LIGWAAVT-----G-SISLGAILLFAIIFLWTPPHFWALALKYKDDY------KAAGIPMLPVVKGERRTKRQI-LLYTL  229 (304)
T ss_pred             cceeeeee-----C-CCCchHHHHHHHHHHhccHHHHHHHHHHHHHH------HHcCCCcccccccHHHHHHHH-HHHHH
Confidence            88886542     3 233333334443333    5666665544443      899999999999999887754 23333


Q ss_pred             HHHH-HHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHH-ccCCChhhHHHHHHHhHHHHHHHHHH
Q 016056          328 GYGG-AVVAGATSTLMISKLVTIIGHIILALMMWLRSRK-VDLDNFDSQFGFYMFLWQLNYVEYIL  391 (396)
Q Consensus       328 ay~~-~~~~g~~~~~~~~~~~~~~g~~i~~~~l~~~~~~-~d~~~~~~~~~f~~~iw~l~~~~y~~  391 (396)
                      .... .++...   .+..+..|.+-..+++..+.+...+ ...+|++..++  +|.+++.|+.-++
T Consensus       230 ~l~~~sl~~~~---~g~~g~~Y~v~a~~l~~~~l~~a~~~~~~~~~~~A~k--lF~~S~~yL~~lf  290 (304)
T COG0109         230 ALAPVSLLLAL---LGYVGYLYLVVATLLGAWFLALAWKLYRKDDRKWARK--LFKYSIIYLALLF  290 (304)
T ss_pred             HHHHHHHHHHH---hccchhHHHHHHHHHHHHHHHHHHHHHhCccHHHHHH--HHHHHHHHHHHHH
Confidence            2221 122111   1122223443333344444333333 33344444333  5777777766554

>PF01040 UbiA: UbiA prenyltransferase family; InterPro: IPR000537 The UbiA family of prenyltransferases includes bacterial 4-hydroxybenzoate octaprenyltransferase (gene ubiA); yeast mitochondrial para-hydroxybenzoate--polyprenyltransferase (gene COQ2); and protohaem IX farnesyltransferase (haem O synthase) from yeast and mammals(gene COX10), and from bacteria (genes cyoE or ctaB) [, ]

Probab=99.95  E-value=6.3e-26  Score=215.47  Aligned_cols=189  Identities=28%  Similarity=0.373  Sum_probs=143.9

Q ss_pred             HHHHHHHHHHHhhcccCCCCchHHHHHHHHHHHHHHHHHHHHhhhhhhhchhhhhc--cCCCCccccCccCHHHHHHHHH
Q 016056          114 NIIVSVTSVCFLPVQSLSQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDVEIDKI--NKPYLPLASGELSMGTGIAICA  191 (396)
Q Consensus       114 ~~~l~~l~g~llA~~~~~~~~~~~l~~~ll~~l~~~l~~~a~~~iNd~~D~e~D~~--n~p~RPl~sG~ls~~~a~~~~~  191 (396)
                      .+..+++.|...+...  ..++..   .+.+.+++++.+.++|.+||+.|+|+|+.  |+|+||+++|+++++++...+.
T Consensus         3 ~~~~~~l~~~~~~~~~--~~~~~~---~~~~~l~~~~~~~~~~~~Nd~~D~~~D~~~~~~~~rPl~~g~i~~~~~~~~~~   77 (257)
T PF01040_consen    3 LSFLPVLAGLALASGG--PFNWPI---FLLGLLAVFLLQLAVYLLNDYFDYEEDRIHPNKPNRPLPSGRISPRQALIFAL   77 (257)
T ss_pred             HHHHHHHHHHHHHHcC--CCCHHH---HHHHHHHHHHHHHHHHHhhChhhhhcCcccccccCcchhHHHHhHHHHHHHHH
Confidence            3455666664444332  233322   34455666799999999999999999999  8899999999999999999999


Q ss_pred             HHHHHHHHHHHHhcHHHHHHHHHHHHHHhheecCCCCccCccccCchhHHHHHHHHHHHHHHHHHHHhhhhhhCCCCCCh
Q 016056          192 GSALLSLALAFLSGSPAVLCAVIAWGLTGAAYSVPLPFLRWKSHTFMAPFTLVILMGLILQIPYFIHSQTYLLGKPFEVT  271 (396)
Q Consensus       192 ~~~~l~l~l~~~lg~~~l~l~l~~~~~l~~~Ys~~lpp~rlKr~~~~g~l~vg~~~g~~~~lg~~~~~~~~l~g~~~~~~  271 (396)
                      ++.++++.+++..+++.+.+. +++.+.++.||   ||+|+||+++++++++++.++..+..+++..      ++.  .+
T Consensus        78 ~~~~l~l~l~~~~~~~~~~~~-~~~~~~~~~Ys---~~~~lk~~~~~~~~~~~~~~~~~~~~~~~~~------~~~--~~  145 (257)
T PF01040_consen   78 ILLLLGLLLALLLGPWFLLIL-LLGFLLGLLYS---PPLRLKRRPLWGELVVALVFGLLILLGAYAA------GGD--PP  145 (257)
T ss_pred             HHHHHHHHHHHhcCchhHHHH-HHHHHHHHHHh---hhhhhcceeccchhhHHHhhhHhhhhhhhhc------CCc--cc
Confidence            999999998888887766554 45666779999   6788999998899999998886666665432      222  12


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCChHHHHHcCCccchhhhccccHHH
Q 016056          272 GPFVFATAIMSIYAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKVLP  319 (396)
Q Consensus       272 ~~~~~~~~~~~l~~~~~~~~~d~~D~egD~~~G~~Tlpv~lG~~~a~~  319 (396)
                      .+.+....+..++.......+|++|+|+|++.|++|+|+++|+++++.
T Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~D~~~D~~~g~~Tl~v~~G~~~~~~  193 (257)
T PF01040_consen  146 PPPFLLAIFFFLLIFAIMFFNDIRDIEGDRKAGRRTLPVLLGEKKARY  193 (257)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHcCCcchHHHHHHHHHHH
Confidence            233333333355666777888999999999999999999999999987

These are integral membrane proteins, which probably contain seven transmembrane segments. The signature is also found in cytochrome C oxidase assembly factor. The complexity of cytochrome C oxidase requires assistance in building the complex, and this is carried out by the cytochrome C oxidase assembly factor.; GO: 0004659 prenyltransferase activity, 0016021 integral to membrane

>PLN02776 prenyltransferase

Probab=99.95  E-value=3e-25  Score=218.48  Aligned_cols=261  Identities=14%  Similarity=0.068  Sum_probs=172.6

Q ss_pred             hhccchHHHHHHHHHHHHHhhcccCCCCchHHHHHHHHHHHHHHHHHHHHhhhhhhhchhhhhccCC--CCccccCccCH
Q 016056          106 VTRYYAQINIIVSVTSVCFLPVQSLSQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDVEIDKINKP--YLPLASGELSM  183 (396)
Q Consensus       106 l~Rp~~~~~~~l~~l~g~llA~~~~~~~~~~~l~~~ll~~l~~~l~~~a~~~iNd~~D~e~D~~n~p--~RPl~sG~ls~  183 (396)
                      ++||+.....+++.+.|+++|.+..+  ++.   .+++.+++++++.+++|++||++|+|+|++|+|  +||+|+|++|+
T Consensus         1 L~Kpri~~lv~~ta~~G~~lA~~~~~--~~~---~l~~~~lg~~l~~aaa~~~N~i~DrdiD~~m~RT~~RPLpsGris~   75 (341)
T PLN02776          1 LSKARLSALVVATSGAGFVLGSGEAI--DLP---GLGWTCAGTMLCAASANTLNQVFEVKNDSKMKRTMRRPLPSGRISV   75 (341)
T ss_pred             CCcchhHHHHHHHHHHHHHHhcCCCC--CHH---HHHHHHHHHHHHHHHHHHHHhHHhhhhcccCCCCCCCCCCCCCCCH
Confidence            57899999999999999999854333  222   145567899999999999999999999999875  99999999999


Q ss_pred             HHHHHHHHHHHHHHHHH-HHHhcHHHHHHHHHHHHHHhheecCCCCccCccccCchhHHHHHHHHH-HHHHHHHHHHhhh
Q 016056          184 GTGIAICAGSALLSLAL-AFLSGSPAVLCAVIAWGLTGAAYSVPLPFLRWKSHTFMAPFTLVILMG-LILQIPYFIHSQT  261 (396)
Q Consensus       184 ~~a~~~~~~~~~l~l~l-~~~lg~~~l~l~l~~~~~l~~~Ys~~lpp~rlKr~~~~g~l~vg~~~g-~~~~lg~~~~~~~  261 (396)
                      ++|+.+++++.++|+.+ ++.+|+.+..++.+..++....||.      +||++.+ +.++|...| .++.+||.+..  
T Consensus        76 ~~A~~~~~~l~~~g~~~l~~~~n~l~~~l~~~~~~ly~~vYt~------lKR~t~~-~~~lG~~~Ga~ppL~Gw~Avt--  146 (341)
T PLN02776         76 PHAVAWAVVVGAAGVALLAYKTNMLTAGLGAGNILLYAFVYTP------LKQIHPA-NTWVGAVVGAIPPLMGWAAAS--  146 (341)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHh------HccCCch-hHHHHHHHHHHHHHHHHHHHc--
Confidence            99999999998888855 5667877766653223334568996      8999976 568888888 78888886642  


Q ss_pred             hhhCCCCCChHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHcCCccchhhhc--cccHHHHHHHHHHHHHHHHHHHHHHh
Q 016056          262 YLLGKPFEVTGPFVFATAIMSIYAFVNGLLKDLPDVEGDKAFGMQTLCVLLG--KEKVLPLCVNMMLLGYGGAVVAGATS  339 (396)
Q Consensus       262 ~l~g~~~~~~~~~~~~~~~~~l~~~~~~~~~d~~D~egD~~~G~~Tlpv~lG--~~~a~~l~~~l~~~ay~~~~~~g~~~  339 (396)
                         | ..  +...+++...+.+|+........+.|.|||+++|++++|+.-+  ++.++.+......+..+..+..+. .
T Consensus       147 ---g-~~--~~~~~~Lf~~~~~Wq~pHf~~la~~~~dDy~~ag~pmlpv~~~~g~~ta~~i~~~~~~l~~~~ll~~~~-g  219 (341)
T PLN02776        147 ---G-QL--DAGAMVLAAALYFWQMPHFMALAYMCRDDYAAGGYRMLSLADATGRRTALVALRNCLYLAPLGFLAYDW-G  219 (341)
T ss_pred             ---C-CC--CHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhCCCcccCccccchHHHHHHHHHHHHHHHHHHHHHHHH-H
Confidence               2 22  2233444455678888766777778888999999999999774  344443322222111111111111 0


Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHccCCChhhHHHHHHHhHHHHHHHHHH
Q 016056          340 TLMISKLVTIIGHIILALMMWLRSRKVDLDNFDSQFGFYMFLWQLNYVEYIL  391 (396)
Q Consensus       340 ~~~~~~~~~~~g~~i~~~~l~~~~~~~d~~~~~~~~~f~~~iw~l~~~~y~~  391 (396)
                      ..++  ..+..+..+...++.+..+-.+.+|.+..  -.+|.+++.|+.-++
T Consensus       220 ~~~~--~~~~~a~~l~~~~l~~~~~~~~~~~~~~a--r~~F~~Sl~yL~~l~  267 (341)
T PLN02776        220 VTSS--PFALEAALLTAYLAASAASFYREPTNANA--RKMFHGSLLYLPAFM  267 (341)
T ss_pred             hhhH--HHHHHHHHHHHHHHHHHHHHhcCCChHHH--HHHHHHHHHHHHHHH
Confidence            0111  23334444444455555555554443332  234566666655443

>PRK12875 ubiA prenyltransferase; Reviewed

Probab=99.94  E-value=7.5e-25  Score=212.03  Aligned_cols=218  Identities=20%  Similarity=0.240  Sum_probs=140.7

Q ss_pred             HHHHHHHHHhhccchHHHHHHHHHHHHHhhcccCCC-CchHHHHHHHHHHHHH--HHHHHHHhhhhhhhchhhhhccCCC
Q 016056           97 KRKLNAISHVTRYYAQINIIVSVTSVCFLPVQSLSQ-VTPAFLLGVLKAVVAQ--IFMNISLCSLNQICDVEIDKINKPY  173 (396)
Q Consensus        97 ~~~l~~~~~l~Rp~~~~~~~l~~l~g~llA~~~~~~-~~~~~l~~~ll~~l~~--~l~~~a~~~iNd~~D~e~D~~n~p~  173 (396)
                      .++++.++++.||+++..++.+++.|.++|....++ +++..     +++++.  +..+.+.|++|||+|+|+|+.|+++
T Consensus         5 ~~~~~~l~~l~RP~~~~~~~~p~l~G~~lA~~~~~~~~~~~~-----~~ll~~~~i~~Nl~~y~iND~~D~D~Dr~~prk   79 (282)
T PRK12875          5 GDRLRYLLVLSRPRFWLYLAGPVVVGVAYAADSVADLFSPAA-----VALFAYFLFPANVFLYGVNDVFDADTDELNPKK   79 (282)
T ss_pred             HHHHHHHHHHhCccchHHHHHHHHHHHHHHhccCcccccHHH-----HHHHHHHHHHHHHHHhcchhhhhhhccccCCCc
Confidence            367889999999999999999999999998654322 33321     111221  2344556778999999999999876


Q ss_pred             CccccCccCH---HHHHHHH-HHHHHHHHHHHHHhcHHHHHHHHHHHHHHhheecCCCCccCccccCchhHHHHHHHHHH
Q 016056          174 LPLASGELSM---GTGIAIC-AGSALLSLALAFLSGSPAVLCAVIAWGLTGAAYSVPLPFLRWKSHTFMAPFTLVILMGL  249 (396)
Q Consensus       174 RPl~sG~ls~---~~a~~~~-~~~~~l~l~l~~~lg~~~l~l~l~~~~~l~~~Ys~~lpp~rlKr~~~~g~l~vg~~~g~  249 (396)
                      +.   |+...   +.+.... +....+++.+....++....+ ++..+++.+.||.  ||+|+|++++.+..+.|+. ..
T Consensus        80 ~~---~r~~~~s~~~~~~~~~~l~~~l~l~l~~~~~~~~~~~-ll~~i~~~~~YS~--pP~rlk~~p~~~~~~~g~~-~~  152 (282)
T PRK12875         80 DR---EREVRYRGDRRVLVAVALSGALALAFLLVLPPAAWPA-LLAFLVLSVEYSA--PPLRFKTTPVLDSLSNGLY-IL  152 (282)
T ss_pred             cC---CCCccHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH-HHHHHHHHHHHcC--CCccchhccHHHHHHHHHH-HH
Confidence            54   22212   2222111 223334444444444332222 2456778899999  9999999997554443332 22


Q ss_pred             HHHHHHHHHhhhhhhCCCCCChHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHcCCccchhhhccccHHHHHHHHHHHHH
Q 016056          250 ILQIPYFIHSQTYLLGKPFEVTGPFVFATAIMSIYAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKVLPLCVNMMLLGY  329 (396)
Q Consensus       250 ~~~lg~~~~~~~~l~g~~~~~~~~~~~~~~~~~l~~~~~~~~~d~~D~egD~~~G~~Tlpv~lG~~~a~~l~~~l~~~ay  329 (396)
                      ++..+++..      .+  +.+...++  +...+|+.+++++||++|+|+|++.|+||+|+++|++++++++..+..++.
T Consensus       153 ~~~~~y~~~------tg--~~~~~~l~--~a~~l~~~~~~~in~i~Die~D~~aGi~Tlav~lG~~~a~~~~~~~~~~a~  222 (282)
T PRK12875        153 PGVAAYALV------SG--SLPPLLAV--AGGWLWAMGMHTFSAIPDIEPDRAAGIRTTATVLGERRTYAYCAACWLLAA  222 (282)
T ss_pred             HHHHHHHHH------cC--CCcHHHHH--HHHHHHHHHHHHHHhccCHHHHHHcCCccchhhccHhhHHHHHHHHHHHHH
Confidence            333333221      21  12333322  223578899999999999999999999999999999999988777776666


Q ss_pred             HHHHHHH
Q 016056          330 GGAVVAG  336 (396)
Q Consensus       330 ~~~~~~g  336 (396)
                      ......+
T Consensus       223 ~~~~~~~  229 (282)
T PRK12875        223 AAFAAVD  229 (282)
T ss_pred             HHHHHHH
Confidence            5544433

>PRK13591 ubiA prenyltransferase; Provisional

Probab=99.93  E-value=3.7e-24  Score=207.32  Aligned_cols=177  Identities=23%  Similarity=0.227  Sum_probs=131.2

Q ss_pred             HHHHHHHHHHhhhhhhhchhhhhccCCCCccccCccCHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHhheecC
Q 016056          146 VAQIFMNISLCSLNQICDVEIDKINKPYLPLASGELSMGTGIAICAGSALLSLALAFLSGSPAVLCAVIAWGLTGAAYSV  225 (396)
Q Consensus       146 l~~~l~~~a~~~iNd~~D~e~D~~n~p~RPl~sG~ls~~~a~~~~~~~~~l~l~l~~~lg~~~l~l~l~~~~~l~~~Ys~  225 (396)
                      +.+.+...++|++|||+|+|+|++|+|+||.+    +++.+..++++..++|+.+++..|++.  ++ +++.+.+++||.
T Consensus        65 ~~~~L~~~s~~~iNd~~D~eiD~IN~P~r~~~----s~~~a~~ls~la~llGl~La~~~g~~l--l~-ll~~l~g~lYS~  137 (307)
T PRK13591         65 IAGGLIIYSVYTLDRALDSEEDAVNRSELIGS----NKKIGLLVSLLAFLLGTYILAMDGMLL--LA-FLPFITGYLYSK  137 (307)
T ss_pred             HHHHHHHHHHHHHhhhccchhhhccCcccccc----CHHHHHHHHHHHHHHHHHHHHHHhHHH--HH-HHHHHHHHHhcC
Confidence            44567889999999999999999999999986    788899999999999999998888643  33 457778999997


Q ss_pred             CC----CccCccccCchhHHHHHHHHHHHHHHHHHHHhhhhhhCCCCCChHHHHHHHHHHHHHHHHHHHHHhCCChHHHH
Q 016056          226 PL----PFLRWKSHTFMAPFTLVILMGLILQIPYFIHSQTYLLGKPFEVTGPFVFATAIMSIYAFVNGLLKDLPDVEGDK  301 (396)
Q Consensus       226 ~l----pp~rlKr~~~~g~l~vg~~~g~~~~lg~~~~~~~~l~g~~~~~~~~~~~~~~~~~l~~~~~~~~~d~~D~egD~  301 (396)
                      ++    .|+|+|+++.+||+.+++.||..+..+.    +.. .+   .+. .......+.....++++.+||++|+|||+
T Consensus       138 Glk~~P~plklK~~~glGnl~V~i~~G~~i~g~~----g~~-~~---~~~-~~~~i~l~~~~~l~~~~iindirDiEGDr  208 (307)
T PRK13591        138 GIKIGKFALKLKGGLGVKNIVVGITWGGFIAGIA----GSY-CG---SLI-PVGLIFLFFGVKLFINSCVYDFKDVKGDT  208 (307)
T ss_pred             CCCCCCccccccCCCchhHHHHHHHHHHHHHHHH----Hhh-hh---hHH-HHHHHHHHHHHHHHHHHHHHHhhhhHhHH
Confidence            31    2448899999999999999995332211    000 01   010 11111111112235667899999999999


Q ss_pred             HcCCccchhhhccccHHHHHHHHHHHHHHHHHHHHHH
Q 016056          302 AFGMQTLCVLLGKEKVLPLCVNMMLLGYGGAVVAGAT  338 (396)
Q Consensus       302 ~~G~~Tlpv~lG~~~a~~l~~~l~~~ay~~~~~~g~~  338 (396)
                      +.|++|+|+++|+++++++...+...+|+..++....
T Consensus       209 ~~G~kTLPV~lG~~~A~~l~~~l~~~~~l~li~~~~~  245 (307)
T PRK13591        209 LAGIKTLPVSLGEQKTRNLLLGIHLFSHLVLGIALIF  245 (307)
T ss_pred             HcCCeeEEEEECHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999888888888765554433

>PRK13592 ubiA prenyltransferase; Provisional

Probab=99.92  E-value=3e-23  Score=199.45  Aligned_cols=178  Identities=16%  Similarity=0.124  Sum_probs=125.8

Q ss_pred             HHHHHHHHHHHHHHHHhhhhhhhchhhhhccCCCCccccCccCHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHH
Q 016056          140 GVLKAVVAQIFMNISLCSLNQICDVEIDKINKPYLPLASGELSMGTGIAICAGSALLSLALAFLSGSPAVLCAVIAWGLT  219 (396)
Q Consensus       140 ~~ll~~l~~~l~~~a~~~iNd~~D~e~D~~n~p~RPl~sG~ls~~~a~~~~~~~~~l~l~l~~~lg~~~l~l~l~~~~~l  219 (396)
                      +.+++++++++..+++|++|||+|+|+|++|+|+||+|||++|+++++.+++++.++++.++... .    .. +...++
T Consensus        47 ~~~l~~~~vf~~~~~gniiNDy~D~EIDrIN~P~RPLPsG~VS~~~A~~~si~L~~~~l~L~~l~-~----i~-i~~~~i  120 (299)
T PRK13592         47 QEFVGVFTVFGFWMILRIADDFKDYETDRRLFPHRALPSGRVKKKDLAIALSFIVAVSVLLNVLF-M----NN-VGWFLF  120 (299)
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHhhHHHhhhcCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHHHH-H----HH-HHHHHH
Confidence            34556677788899999999999999999999999999999999999999988877777665444 1    11 122333


Q ss_pred             hhee-----cCCCCccCccccCchhHHHHHHHHHHHHHHH--HHHH-hhhhhhCCCCCChHHHHHHHHHHHHHHHHHHHH
Q 016056          220 GAAY-----SVPLPFLRWKSHTFMAPFTLVILMGLILQIP--YFIH-SQTYLLGKPFEVTGPFVFATAIMSIYAFVNGLL  291 (396)
Q Consensus       220 ~~~Y-----s~~lpp~rlKr~~~~g~l~vg~~~g~~~~lg--~~~~-~~~~l~g~~~~~~~~~~~~~~~~~l~~~~~~~~  291 (396)
                      .+.|     +.     ++|+.++.||+.++...|.++..|  ++.. .+....|.+. .....+++.+...+.++++|+.
T Consensus       121 ~~lY~~lm~a~-----~~K~~~l~gNl~Va~ltg~~f~~g~~~~~~~fg~~~~g~~~-~~~~~~~l~l~afl~~l~rEI~  194 (299)
T PRK13592        121 LYIYGTLMSFW-----FFKRDKIQNSLPLALVTHNPVMMILNLYTISFVCYKYNLPL-LSLPTVLLAFTMYFPSLIWEVC  194 (299)
T ss_pred             HHHHHHHHHHH-----HHcccCCCcchhhhhhccchhhhchhhhhhhhhhhhcccch-hhHHHHHHHHHHHHHHHHHHHH
Confidence            4555     65     589999999999999888665444  1110 0011122111 1111122223334557889999


Q ss_pred             HhCCChHHHHHcCCccchhhhccccHHHHHHHHHHHHHHH
Q 016056          292 KDLPDVEGDKAFGMQTLCVLLGKEKVLPLCVNMMLLGYGG  331 (396)
Q Consensus       292 ~d~~D~egD~~~G~~Tlpv~lG~~~a~~l~~~l~~~ay~~  331 (396)
                      +|++| |||++ |.+|+|+.+|.|++.++..++..++.+.
T Consensus       195 KdieD-~gd~~-~~~Tlpi~~G~kkA~~ia~~l~ii~v~~  232 (299)
T PRK13592        195 RKIRA-PKDET-EYVTYSKLFGYKKATRFIEVVTLLDILT  232 (299)
T ss_pred             HhhcC-Ccccc-CCeeechhccchhHHHHHHHHHHHHHHH
Confidence            99999 88886 5999999999999999877776665543

>PRK12324 phosphoribose diphosphate:decaprenyl-phosphate phosphoribosyltransferase; Provisional

Probab=99.88  E-value=2.3e-20  Score=181.52  Aligned_cols=148  Identities=24%  Similarity=0.230  Sum_probs=114.8

Q ss_pred             HHHHHHHHhhccchHHHHHHHHHHHHHhhcccCCCCchHHHHHHHHHHHHHHHHHHHHhhhhhhhchhhhhcc--CCCCc
Q 016056           98 RKLNAISHVTRYYAQINIIVSVTSVCFLPVQSLSQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDVEIDKIN--KPYLP  175 (396)
Q Consensus        98 ~~l~~~~~l~Rp~~~~~~~l~~l~g~llA~~~~~~~~~~~l~~~ll~~l~~~l~~~a~~~iNd~~D~e~D~~n--~p~RP  175 (396)
                      +++++|+|++||++|.++.+.+.. .+++.... +..  .+...++++++.+++.+++|++||++|+|+|++|  ||+||
T Consensus         9 ~~l~~~l~L~RP~~w~~nll~~~~-~~~a~~~~-~~~--~~~~~llafl~~~l~~sa~y~iND~~D~e~Dr~~prk~~RP   84 (295)
T PRK12324          9 NLLAGYLKLLRPKQWIKNLFVFAA-PIFAGNLL-NPG--ALLKVLLAFVLFCLASSAVYLVNDIRDVEADRLHPTKRNRP   84 (295)
T ss_pred             HHHHHHHHHhCchHHHHHHHHHHH-HHHHHhhc-ccc--hHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhccCCCCCCCC
Confidence            578999999999999999876543 34443211 111  1122445666778889999999999999999997  67999


Q ss_pred             cccCccCHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHhheecCCCCccCccccCchhHHHHHHHHHHHHHHHH
Q 016056          176 LASGELSMGTGIAICAGSALLSLALAFLSGSPAVLCAVIAWGLTGAAYSVPLPFLRWKSHTFMAPFTLVILMGLILQIPY  255 (396)
Q Consensus       176 l~sG~ls~~~a~~~~~~~~~l~l~l~~~lg~~~l~l~l~~~~~l~~~Ys~~lpp~rlKr~~~~g~l~vg~~~g~~~~lg~  255 (396)
                      +++|++++++++.++.++.++|+.+++.+|+....+. +..+++.++||.     ++|+++.+++++++..++..+..|.
T Consensus        85 lasG~is~~~A~~~~~~l~~~~l~la~~l~~~~~~~~-~~~~~~~~~Ys~-----~lK~~~~~d~l~va~~~~lr~~~G~  158 (295)
T PRK12324         85 IASGVVSVSLAYILAVVLLVASLALAYLLSPKLALVL-LVYLVLNLAYSF-----KLKHQPVLDVFCIASGFVLRAIAGG  158 (295)
T ss_pred             CCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhH-----HhcCCchhhHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999998888887655443 456777889997     5899999999998877765555554

>PRK08238 hypothetical protein; Validated

Probab=99.87  E-value=4.1e-20  Score=190.99  Aligned_cols=189  Identities=22%  Similarity=0.221  Sum_probs=141.1

Q ss_pred             HHHHHHHHHHhhccchHHHHHHHHHHHHHhhcccCCCCchHHHHHHHHHHHHHHHHHHHHhhhhhhhchhhhhcc--CCC
Q 016056           96 VKRKLNAISHVTRYYAQINIIVSVTSVCFLPVQSLSQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDVEIDKIN--KPY  173 (396)
Q Consensus        96 ~~~~l~~~~~l~Rp~~~~~~~l~~l~g~llA~~~~~~~~~~~l~~~ll~~l~~~l~~~a~~~iNd~~D~e~D~~n--~p~  173 (396)
                      .+.++++|++++||++|.++.+.++ +.+.+.. ..+  ...+...++++++..++.+++|++||++|+|+|++|  ||+
T Consensus       187 ~~~~~~~~~~l~Rp~q~~kn~l~~~-p~l~a~~-~~~--~~~~~~~~~~f~~~~l~~sa~~~~ND~~D~e~Dr~~~rk~~  262 (479)
T PRK08238        187 RPARLRTWLKALRVHQWAKNLLVFV-PLLAAHQ-FGD--LQALLAALLAFLAFSLCASAVYILNDLLDLEADRAHPRKRR  262 (479)
T ss_pred             CchHHHHHHHHhCCcHHHHHHHHHH-HHHHhcc-cCC--hHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhhccCCCCCC
Confidence            4457899999999999999988744 6666632 222  222223556778888999999999999999999999  569


Q ss_pred             CccccCccCHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHhheecCCCCccCccccCchhHHHHHHHHHHHHHH
Q 016056          174 LPLASGELSMGTGIAICAGSALLSLALAFLSGSPAVLCAVIAWGLTGAAYSVPLPFLRWKSHTFMAPFTLVILMGLILQI  253 (396)
Q Consensus       174 RPl~sG~ls~~~a~~~~~~~~~l~l~l~~~lg~~~l~l~l~~~~~l~~~Ys~~lpp~rlKr~~~~g~l~vg~~~g~~~~l  253 (396)
                      ||++||++|+++|+.++.++.++|+.+++.+|+..+ +.++..+++.++||.     ++||+++++++++|+.++..+..
T Consensus       263 RPlasG~is~~~A~~~~~~l~~~~~~l~~~l~~~~~-~~~~~~~~~~~~Ys~-----~lKr~~~~~~~~la~~~~lr~~~  336 (479)
T PRK08238        263 RPFASGALPIPFGLAAAPLLLLAGLALALALGPAFL-LVLLAYLALTLAYSL-----RLKRKVLVDVLTLAALYTLRIIA  336 (479)
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHH-HHHHHHHHHHHHhhH-----HhcCCccccchHHHHHHHHHHHH
Confidence            999999999999999999999999999888887443 333567777889997     58999999999999887766666


Q ss_pred             HHHHHhhhhhhCCCCCChHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHcCC
Q 016056          254 PYFIHSQTYLLGKPFEVTGPFVFATAIMSIYAFVNGLLKDLPDVEGDKAFGM  305 (396)
Q Consensus       254 g~~~~~~~~l~g~~~~~~~~~~~~~~~~~l~~~~~~~~~d~~D~egD~~~G~  305 (396)
                      |+.+.      +  ...+.+++.   +..++.....+.|...|.++++..|.
T Consensus       337 G~~a~------~--~~~s~wll~---~~~~~~l~la~~KR~~El~~~~~~~~  377 (479)
T PRK08238        337 GAAAI------G--VALSFWLLA---FSMFFFLSLALVKRYTELRRALQRGK  377 (479)
T ss_pred             HHHHh------c--cCHHHHHHH---HHHHHHHHHHHHHhHHHHHHHHhcCC
Confidence            65431      2  122323222   22233445667888888888877775

>KOG1380 consensus Heme A farnesyltransferase [Coenzyme transport and metabolism]

Probab=99.62  E-value=8e-16  Score=147.05  Aligned_cols=208  Identities=15%  Similarity=0.154  Sum_probs=140.4

Q ss_pred             HHHHHHHhhccchHHHHHHHHHHHHHhhcccCCCCchHHHHHHHHHHHHHHHHHHHHhhhhhhhchhhhhccCC--CCcc
Q 016056           99 KLNAISHVTRYYAQINIIVSVTSVCFLPVQSLSQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDVEIDKINKP--YLPL  176 (396)
Q Consensus        99 ~l~~~~~l~Rp~~~~~~~l~~l~g~llA~~~~~~~~~~~l~~~ll~~l~~~l~~~a~~~iNd~~D~e~D~~n~p--~RPl  176 (396)
                      -++.|+||.||+--...+++...|+++|.+.. +++     .++.+.++..+..++.|.+||+++.+.|..++|  .||+
T Consensus        93 ~~~~y~eLsK~rLT~LVV~tt~~gYalap~p~-s~~-----~l~~~tvGT~L~S~sANaiNQ~~E~~~DsqM~RT~~Rpl  166 (409)
T KOG1380|consen   93 YARCYLELSKPRLTMLVVLTTMTGYALAPGPF-SFP-----TLLYTTVGTGLCSASANAINQIFEPPFDSQMKRTQNRPL  166 (409)
T ss_pred             hHHHHHHhcccceEEEEeeeccccccccccCC-Ccc-----hhHHHhhhhHHHHhhhHhhhhhccCCchhhhHhhccccc
Confidence            47899999999988888888888998886542 222     245577899999999999999999999999987  8999


Q ss_pred             ccCccCHHHHHHHHHHHHHHHHHHHHH-hcHHHHHHHHHHHHHHhheecCCCCccCccccCchhHHHHHHHHH-HHHHHH
Q 016056          177 ASGELSMGTGIAICAGSALLSLALAFL-SGSPAVLCAVIAWGLTGAAYSVPLPFLRWKSHTFMAPFTLVILMG-LILQIP  254 (396)
Q Consensus       177 ~sG~ls~~~a~~~~~~~~~l~l~l~~~-lg~~~l~l~l~~~~~l~~~Ys~~lpp~rlKr~~~~g~l~vg~~~g-~~~~lg  254 (396)
                      ++|++++.+|+.++.+....|+.+.++ +|+....++..=.++.+++|+-      +||... .|..+|.+.| +|+.+|
T Consensus       167 v~g~isp~hA~~fAt~~g~~G~slL~~gvNpl~a~Lga~Ni~LY~~vYTP------lKrihi-inTWvGavVGAIPPLMG  239 (409)
T KOG1380|consen  167 VRGRISPLHAVTFATLTGTAGVSLLAFGVNPLAAALGAGNIFLYAGVYTP------LKRIHI-INTWVGAVVGAIPPLMG  239 (409)
T ss_pred             ccCccChHHHHHHHHHhccccceeeeecccHHHHHHhhcchheeeccccc------hhhhhh-hhhHHHHHhccCCccch
Confidence            999999999999998888888776544 6766554443223445667874      899874 4556666666 888899


Q ss_pred             HHHHhhhhhhCCCCCChHHHHHHHHHHHHHHHH--HHHHHhCCChHHHHHcCCccchhhhc---cccHHHHHHHHHHHHH
Q 016056          255 YFIHSQTYLLGKPFEVTGPFVFATAIMSIYAFV--NGLLKDLPDVEGDKAFGMQTLCVLLG---KEKVLPLCVNMMLLGY  329 (396)
Q Consensus       255 ~~~~~~~~l~g~~~~~~~~~~~~~~~~~l~~~~--~~~~~d~~D~egD~~~G~~Tlpv~lG---~~~a~~l~~~l~~~ay  329 (396)
                      |.+..     | ..+ + ..+++......|.+-  ..+..++|  ++..+.|.+++++.--   .+.+.+....++.+.|
T Consensus       240 wAAas-----g-~l~-~-ga~iLa~~LyaWQfPHFnaLS~~lR--~DYs~~GY~Mma~~np~l~rr~alr~s~a~~~L~~  309 (409)
T KOG1380|consen  240 WAAAS-----G-LLD-P-GAMILAGILYAWQFPHFNALSWNLR--NDYSKAGYRMMAVTNPGLCRRVALRYSLAFLPLSY  309 (409)
T ss_pred             hhhhc-----c-CCC-c-cHHHHHHHHHHhcccchhhhhhhhc--hhhhhccEEEEEeeccchhhHHHHHHHHHHhhhhc
Confidence            86542     2 111 1 122222222334221  12223332  2347999999988642   2334444444444443

>KOG4581 consensus Predicted membrane protein [Function unknown]

Probab=99.51  E-value=2.5e-14  Score=131.13  Aligned_cols=231  Identities=13%  Similarity=0.087  Sum_probs=157.5

Q ss_pred             HHHHHHHHHhhccchHHHHHHHHHHHHHhhcccCCCCchHHHHHHHHHHHHHHHHHHHHhhhhhhhch--hhhhccCCCC
Q 016056           97 KRKLNAISHVTRYYAQINIIVSVTSVCFLPVQSLSQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDV--EIDKINKPYL  174 (396)
Q Consensus        97 ~~~l~~~~~l~Rp~~~~~~~l~~l~g~llA~~~~~~~~~~~l~~~ll~~l~~~l~~~a~~~iNd~~D~--e~D~~n~p~R  174 (396)
                      ..+.+.|+-..||+....+..++.+|.++|++....-++... .+.++.++++..+.++|.+|.|+|.  .+|++...+|
T Consensus        58 ~~k~~syllalrpws~sasl~p~~lgsalayrs~~~~d~~l~-~~fl~a~avlavh~agnlvntyfdf~kgid~kkaddr  136 (359)
T KOG4581|consen   58 FMKCASYLLALRPWSFSASLTPTALGSALAYRSHGAEDFRLA-TFFLCAFAVLAVHCAGNLVNTYFDFIKGIDHKKADDR  136 (359)
T ss_pred             HHHHHHHHhhhcccccccccchHhhhhHHHHhhccccchhHH-HHHHHHhhheeeecccchhhhhhhhhhccccccccch
Confidence            367899999999999999999999999999764322233322 2445667778899999999999996  6898887899


Q ss_pred             ccccCccCHHHHHHHHHHHHHHHHHH---HHHhcHH---HHHHHHHHHHHHhheecCCCCccCccccCchhHHHHHHHHH
Q 016056          175 PLASGELSMGTGIAICAGSALLSLAL---AFLSGSP---AVLCAVIAWGLTGAAYSVPLPFLRWKSHTFMAPFTLVILMG  248 (396)
Q Consensus       175 Pl~sG~ls~~~a~~~~~~~~~l~l~l---~~~lg~~---~l~l~l~~~~~l~~~Ys~~lpp~rlKr~~~~g~l~vg~~~g  248 (396)
                      .+++..+.+.++..++..+..+|...   ...+++.   .+.+.-+.++--.++|+.+.   .+|+.. +|.+++-+.+|
T Consensus       137 tlvd~il~~~dvv~~g~~ly~~gc~~~~~l~~lsp~klehlaliyfggls~sflytggi---gfkyia-lgdliili~fg  212 (359)
T KOG4581|consen  137 TLVDHILEKDDVVRFGAFLYMAGCGCAACLAVLSPAKLEHLALIYFGGLSGSFLYTGGI---GFKYIA-LGDLIILILFG  212 (359)
T ss_pred             hHHHHhcChhheehhhHHHHHhcchHHHHHHhCCHhhhhhhhhhhccCcccceeEeccc---ceEEEe-ccCEEEEEeec
Confidence            99999999999888887776665443   2233332   22221133455567999854   578776 57777766777


Q ss_pred             HH-HHHHHHHHhhhhhhCCCCCChHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHcCCccchhhhccccHHHHHHHHHHH
Q 016056          249 LI-LQIPYFIHSQTYLLGKPFEVTGPFVFATAIMSIYAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKVLPLCVNMMLL  327 (396)
Q Consensus       249 ~~-~~lg~~~~~~~~l~g~~~~~~~~~~~~~~~~~l~~~~~~~~~d~~D~egD~~~G~~Tlpv~lG~~~a~~l~~~l~~~  327 (396)
                      .+ +.+.+..  ++   | ..++.+ ... .+...+-+-++.+.|+.+|.|.||++|+-|+++.+|+..+-.++..++..
T Consensus       213 piavlfaf~~--q~---g-~l~~~~-l~y-aiplalnteailhsnntrd~dndr~agivtlailig~t~s~ily~~llf~  284 (359)
T KOG4581|consen  213 PIAVLFAFAI--QT---G-HLAIFP-LGY-AIPLALNTEAILHSNNTRDADNDREAGIVTLAILIGPTASHILYAMLLFA  284 (359)
T ss_pred             hHHHHHHHHH--hc---C-ceeEEe-ehh-eeeeccchHHHhccCCCcccccccccCeEEEEEeecccHHHHHHHHHHHH
Confidence            32 2222211  11   2 222211 101 01112334567789999999999999999999999998887777777777


Q ss_pred             HHHHHHHHHHHhh
Q 016056          328 GYGGAVVAGATST  340 (396)
Q Consensus       328 ay~~~~~~g~~~~  340 (396)
                      -|....+.+..+.
T Consensus       285 py~lf~i~~~~~s  297 (359)
T KOG4581|consen  285 PYLLFFIFALHCS  297 (359)
T ss_pred             HHHHHHHHHHHHH
Confidence            8877666554443

>PRK13591 ubiA prenyltransferase; Provisional

Probab=92.34  E-value=0.57  Score=46.22  Aligned_cols=66  Identities=21%  Similarity=0.260  Sum_probs=36.3

Q ss_pred             hhhhhhchhhhhccCC-CCccccCccCHHHHHHHHHHHHHH---HHHHHHHhc-----HHHHHHHHHHHHHHhheecC
Q 016056          157 SLNQICDVEIDKINKP-YLPLASGELSMGTGIAICAGSALL---SLALAFLSG-----SPAVLCAVIAWGLTGAAYSV  225 (396)
Q Consensus       157 ~iNd~~D~e~D~~n~p-~RPl~sG~ls~~~a~~~~~~~~~l---~l~l~~~lg-----~~~l~l~l~~~~~l~~~Ys~  225 (396)
                      .+||+.|.|.|+.++. .-|+.=|   ++.+..+...+.++   ..+++..+|     +...+.+++.+++..+.|+.
T Consensus       197 iindirDiEGDr~~G~kTLPV~lG---~~~A~~l~~~l~~~~~l~li~~~~~g~l~~~~~~~~~s~~~~l~~~~~~~~  271 (307)
T PRK13591        197 CVYDFKDVKGDTLAGIKTLPVSLG---EQKTRNLLLGIHLFSHLVLGIALIFGVIAFEPIILLYSFVCGLICIQVYSS  271 (307)
T ss_pred             HHHHhhhhHhHHHcCCeeEEEEEC---HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHcC
Confidence            6899999999999865 4454334   33433333222221   122222222     22233344567778889998

>COG1575 MenA 1,4-dihydroxy-2-naphthoate octaprenyltransferase [Coenzyme metabolism]

Probab=89.46  E-value=3.4  Score=40.62  Aligned_cols=45  Identities=16%  Similarity=0.122  Sum_probs=30.9

Q ss_pred             HHHHHHHHHHHHhhhhhhhchhhhhccCCCCccccCccCHHHHHHHH
Q 016056          144 AVVAQIFMNISLCSLNQICDVEIDKINKPYLPLASGELSMGTGIAIC  190 (396)
Q Consensus       144 ~~l~~~l~~~a~~~iNd~~D~e~D~~n~p~RPl~sG~ls~~~a~~~~  190 (396)
                      ..+......+..+..|+..|.|+|+.|+++-+.+  ++..+.+..+.
T Consensus       181 ~slp~gil~~~Il~aNNirDie~D~~~gk~TLav--rLG~~~~~~l~  225 (303)
T COG1575         181 PSLPVGILIANILLANNLRDIEEDIRNGKYTLAV--RLGRKNARKLY  225 (303)
T ss_pred             HHHHHHHHHHHHHHhcccccchhHHhcCCcceee--eeccHhHHHHH
Confidence            3455566777888899999999999998854432  34444444443

>PRK07419 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional

Probab=89.37  E-value=4.3  Score=40.04  Aligned_cols=41  Identities=12%  Similarity=-0.006  Sum_probs=27.1

Q ss_pred             HHHHHHhhhhhhhchhhhhccCCCCccccCccCHHHHHHHHHH
Q 016056          150 FMNISLCSLNQICDVEIDKINKPYLPLASGELSMGTGIAICAG  192 (396)
Q Consensus       150 l~~~a~~~iNd~~D~e~D~~n~p~RPl~sG~ls~~~a~~~~~~  192 (396)
                      +........||+.|+|+|+.++++ .++ -++.++.+..+...
T Consensus       185 ll~~~IL~~Nn~rD~e~D~~~Gk~-TL~-v~lG~~~a~~ly~~  225 (304)
T PRK07419        185 LATSLILFCSHFHQVEDDLAAGKR-SPI-VRLGTKRGAQLLPW  225 (304)
T ss_pred             HHHHHHHHHcCCcchhhHHHcCCc-cee-eeechHhHHHHHHH
Confidence            556777889999999999998763 222 14455555544433

>PRK13387 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional

Probab=88.25  E-value=2.3  Score=42.20  Aligned_cols=48  Identities=21%  Similarity=0.240  Sum_probs=31.2

Q ss_pred             HHHHHHHHHHhhhhhhhchhhhhccCCC-CccccCccCHHHHHHHHHHHHHH
Q 016056          146 VAQIFMNISLCSLNQICDVEIDKINKPY-LPLASGELSMGTGIAICAGSALL  196 (396)
Q Consensus       146 l~~~l~~~a~~~iNd~~D~e~D~~n~p~-RPl~sG~ls~~~a~~~~~~~~~l  196 (396)
                      +...+........||+.|+|+|+.++++ -|.   ++.++.+..+..++.++
T Consensus       196 lp~g~l~~~ill~Nn~~D~e~D~~~gk~TL~v---~lG~~~a~~l~~~l~~~  244 (317)
T PRK13387        196 LPIIFTIANIMLANNLRDLDEDIKNHRYTLVY---YIGREKGVVLFAILFYA  244 (317)
T ss_pred             HHHHHHHHHHHHhcCCccchhHHHcCCeeeee---eEcHHhHHHHHHHHHHH
Confidence            4445666777889999999999998753 232   45555555554443333

>PRK12872 ubiA prenyltransferase; Reviewed

Probab=88.14  E-value=5.7  Score=38.34  Aligned_cols=34  Identities=21%  Similarity=0.191  Sum_probs=23.7

Q ss_pred             HHHHHHHHHhhhhhhhchhhhhccCC-CCccccCc
Q 016056          147 AQIFMNISLCSLNQICDVEIDKINKP-YLPLASGE  180 (396)
Q Consensus       147 ~~~l~~~a~~~iNd~~D~e~D~~n~p-~RPl~sG~  180 (396)
                      ..++.......+||..|+|.|+.++. .-|..-|+
T Consensus       169 ~~fl~~~~~~~~~d~~D~e~D~~~G~~Tlpv~lG~  203 (285)
T PRK12872        169 FIFLKSFIREIVFDIKDIEGDRKSGLKTLPIVLGK  203 (285)
T ss_pred             HHHHHHHHHHHHHhcccchhHHHcCCcccchhcch
Confidence            33455666778899999999998653 44554444

>PLN02922 prenyltransferase

Probab=88.09  E-value=2.5  Score=41.89  Aligned_cols=43  Identities=12%  Similarity=0.099  Sum_probs=28.3

Q ss_pred             HHHHHHHHhhhhhhhchhhhhccCCCCccccCccCHHHHHHHHHH
Q 016056          148 QIFMNISLCSLNQICDVEIDKINKPYLPLASGELSMGTGIAICAG  192 (396)
Q Consensus       148 ~~l~~~a~~~iNd~~D~e~D~~n~p~RPl~sG~ls~~~a~~~~~~  192 (396)
                      ..+........||+.|+|+|+.++++....  ++.++.+..+...
T Consensus       197 ~gll~~~iL~~Nn~rD~e~D~~~Gk~TL~v--~lG~~~a~~l~~~  239 (315)
T PLN02922        197 VGLTTTLILFCSHFHQIDGDRAVGKMSPLV--RLGTEKGSRVVRW  239 (315)
T ss_pred             HHHHHHHHHHHccCcchhhHHHcCccceee--EEChHHHHHHHHH
Confidence            345566788899999999999987643221  4455555544433

>PRK13105 ubiA prenyltransferase; Reviewed

Probab=87.70  E-value=3.4  Score=40.38  Aligned_cols=58  Identities=14%  Similarity=0.141  Sum_probs=38.5

Q ss_pred             HHHHHHHHHHhhhhhhhchhhhhccCCCCccccCccCHHHHHHHHHHHHHHHHHHHHHhc
Q 016056          146 VAQIFMNISLCSLNQICDVEIDKINKPYLPLASGELSMGTGIAICAGSALLSLALAFLSG  205 (396)
Q Consensus       146 l~~~l~~~a~~~iNd~~D~e~D~~n~p~RPl~sG~ls~~~a~~~~~~~~~l~l~l~~~lg  205 (396)
                      ++..+...+...+||+.|.|.||.++. |.++. ++.++.+..++.++.+++.++...++
T Consensus       167 ~~~~~~~~a~~ii~~irDie~Dr~~G~-~Tlpv-~lG~~~a~~~~~~l~~~a~~~~~~~~  224 (282)
T PRK13105        167 AAFFLWGMASHAFGAVQDVVADREAGI-ASIAT-VLGARRTVRLAVGLYAAAAVLMLALP  224 (282)
T ss_pred             HHHHHHHHHHHHHHhCcchHhHHHcCC-ccchH-HhcHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334455778889999999999998754 23332 56677777777666666655443344

>TIGR02235 menA_cyano-plnt 1,4-dihydroxy-2-naphthoate phytyltransferase

Probab=85.11  E-value=11  Score=36.89  Aligned_cols=45  Identities=11%  Similarity=-0.076  Sum_probs=29.6

Q ss_pred             HHHHHHHhhhhhhhchhhhhccCCCCccccCccCHHHHHHHHHHHHH
Q 016056          149 IFMNISLCSLNQICDVEIDKINKPYLPLASGELSMGTGIAICAGSAL  195 (396)
Q Consensus       149 ~l~~~a~~~iNd~~D~e~D~~n~p~RPl~sG~ls~~~a~~~~~~~~~  195 (396)
                      .+...+....||+.|+|+|+.+.++ .++ -++.++.+..+...+..
T Consensus       171 gl~~~~iL~~Nn~rD~e~D~~~Gk~-TL~-v~lG~~~a~~l~~~l~~  215 (285)
T TIGR02235       171 GLATTLILFCSHFHQVEDDLAHGKR-SPV-VRLGTKLAAKIVPWVIS  215 (285)
T ss_pred             HHHHHHHHHhcCCccchhHHHcCCc-cee-heecHHhHHHHHHHHHH
Confidence            3567778889999999999998653 222 14555665555444333

This family of phytyltransferases, found in plants and cyanobacteria, are involved in the biosythesis of phylloquinone (Vitamin K1). Phylloquinone is a critical component of photosystem I. The closely related MenA enzyme from bacteria transfers a prenyl group (which only differs in the saturation of the isoprenyl groups) in the biosynthesis of menaquinone. Activity towards both substrates in certain organisms should be considered a possibility.

>PRK12875 ubiA prenyltransferase; Reviewed

Probab=83.97  E-value=13  Score=36.37  Aligned_cols=51  Identities=22%  Similarity=0.234  Sum_probs=32.5

Q ss_pred             HHHHHHHHHHhhhhhhhchhhhhccCC-CCccccCccCHHHHHHHHHHHHHHHHH
Q 016056          146 VAQIFMNISLCSLNQICDVEIDKINKP-YLPLASGELSMGTGIAICAGSALLSLA  199 (396)
Q Consensus       146 l~~~l~~~a~~~iNd~~D~e~D~~n~p-~RPl~sG~ls~~~a~~~~~~~~~l~l~  199 (396)
                      ++..+...+...+||+.|+|.|+..+. .-|.   ++.++.+..+..++.+++..
T Consensus       172 ~a~~l~~~~~~~in~i~Die~D~~aGi~Tlav---~lG~~~a~~~~~~~~~~a~~  223 (282)
T PRK12875        172 AGGWLWAMGMHTFSAIPDIEPDRAAGIRTTAT---VLGERRTYAYCAACWLLAAA  223 (282)
T ss_pred             HHHHHHHHHHHHHHhccCHHHHHHcCCccchh---hccHhhHHHHHHHHHHHHHH
Confidence            444567777889999999999997643 3333   44555555555444444433

>TIGR01474 ubiA_proteo 4-hydroxybenzoate polyprenyl transferase, proteobacterial

Probab=83.22  E-value=13  Score=36.03  Aligned_cols=36  Identities=19%  Similarity=0.168  Sum_probs=27.1

Q ss_pred             HHHHHHHHHHHhhhhhhhchhhhhccC-CCCccccCc
Q 016056          145 VVAQIFMNISLCSLNQICDVEIDKINK-PYLPLASGE  180 (396)
Q Consensus       145 ~l~~~l~~~a~~~iNd~~D~e~D~~n~-p~RPl~sG~  180 (396)
                      .++.++.+..-..+|++.|+|.|+..+ |.-|..-|+
T Consensus       166 ~~~~~lw~~~~~~~~a~~D~e~D~~~G~~tlpv~~G~  202 (281)
T TIGR01474       166 YLANILWTLGYDTIYAMQDKEDDIKIGVKSTALRFGD  202 (281)
T ss_pred             HHHHHHHHHHHHHHHHHhhHHhHHHcCCCcccHHhhh
Confidence            455667777888899999999999764 466665664

A fairly deep split by both clustering (UPGMA) and phylogenetics (NJ tree) separates this group (mostly Proteobacterial and mitochondrial), with several characterized members, from another group (mostly archaeal and Gram-positive bacterial) lacking characterized members.

>PRK13592 ubiA prenyltransferase; Provisional

Probab=82.71  E-value=27  Score=34.43  Aligned_cols=43  Identities=12%  Similarity=0.177  Sum_probs=27.7

Q ss_pred             HHHHHHHHHhCCChHHHHHcCCccchhhhcc---ccHHHHHHHHHHH
Q 016056          284 YAFVNGLLKDLPDVEGDKAFGMQTLCVLLGK---EKVLPLCVNMMLL  327 (396)
Q Consensus       284 ~~~~~~~~~d~~D~egD~~~G~~Tlpv~lG~---~~a~~l~~~l~~~  327 (396)
                      .+.+-.++||+.|+|-|+. ++..-|+-=|.   +.++.....+..+
T Consensus        58 ~~~~gniiNDy~D~EIDrI-N~P~RPLPsG~VS~~~A~~~si~L~~~  103 (299)
T PRK13592         58 FWMILRIADDFKDYETDRR-LFPHRALPSGRVKKKDLAIALSFIVAV  103 (299)
T ss_pred             HHHHhHHHHHHhhHHHhhh-cCCCCCCCcCCCCHHHHHHHHHHHHHH
Confidence            3445678999999999954 57777776664   3444444344333

>PLN00012 chlorophyll synthetase; Provisional

Probab=81.25  E-value=7.9  Score=39.38  Aligned_cols=32  Identities=22%  Similarity=0.294  Sum_probs=23.8

Q ss_pred             HHHHHHHhhhhhhhchhhhhcc-CCCCccccCc
Q 016056          149 IFMNISLCSLNQICDVEIDKIN-KPYLPLASGE  180 (396)
Q Consensus       149 ~l~~~a~~~iNd~~D~e~D~~n-~p~RPl~sG~  180 (396)
                      .+...+....||+-|+|.|+.. ++.-|+.-|.
T Consensus       262 ~l~~lai~ivnd~~Die~Dr~aG~~TLpV~~G~  294 (375)
T PLN00012        262 SIAGLGIAIVNDFKSIEGDRALGLQSLPVAFGV  294 (375)
T ss_pred             HHHHHHHHHHhhhcchhhHHHcCCcccceeech
Confidence            4566678889999999999976 4556665554

>PRK07566 bacteriochlorophyll/chlorophyll a synthase; Reviewed

Probab=81.04  E-value=7.1  Score=38.60  Aligned_cols=31  Identities=29%  Similarity=0.315  Sum_probs=22.3

Q ss_pred             HHHHHHhhhhhhhchhhhhccC-CCCccccCc
Q 016056          150 FMNISLCSLNQICDVEIDKINK-PYLPLASGE  180 (396)
Q Consensus       150 l~~~a~~~iNd~~D~e~D~~n~-p~RPl~sG~  180 (396)
                      +...+....||+.|+|.|+..+ +.-|+.-|+
T Consensus       200 l~~~~~~~~~d~~D~e~D~~aG~~Tlpv~~G~  231 (314)
T PRK07566        200 LGAHGIMTLNDFKSVEGDRQLGLRSLPVVFGE  231 (314)
T ss_pred             HHHHHHHHHHHHHHhHhHHHcCCcccceeEcH
Confidence            4455668899999999999864 455554443

>PRK06080 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Validated

Probab=80.80  E-value=7.7  Score=37.72  Aligned_cols=46  Identities=20%  Similarity=0.138  Sum_probs=29.0

Q ss_pred             HHHHHHHHHHhhhhhhhchhhhhccCC-CCccccCccCHHHHHHHHHHHH
Q 016056          146 VAQIFMNISLCSLNQICDVEIDKINKP-YLPLASGELSMGTGIAICAGSA  194 (396)
Q Consensus       146 l~~~l~~~a~~~iNd~~D~e~D~~n~p-~RPl~sG~ls~~~a~~~~~~~~  194 (396)
                      +...+........||+.|+|.|+.++. .-|.   ++..+.+..+...+.
T Consensus       175 l~~~l~~~~~~~~n~~~D~~~D~~~G~~Tl~v---~lG~~~a~~~~~~l~  221 (293)
T PRK06080        175 LPCGLLIGAVLLANNIRDIETDRENGKNTLAV---RLGDKNARRLHAALL  221 (293)
T ss_pred             HHHHHHHHHHHHhcCCCcchhHHHcCCeeEEe---eECcHhHHHHHHHHH
Confidence            334456677778999999999998754 3333   444555444443333

>COG0382 UbiA 4-hydroxybenzoate polyprenyltransferase and related prenyltransferases [Coenzyme metabolism]

Probab=80.22  E-value=22  Score=34.48  Aligned_cols=31  Identities=19%  Similarity=0.117  Sum_probs=23.3

Q ss_pred             HHHHHHHHHhCCChHHHHHcCC-ccchhhhcc
Q 016056          284 YAFVNGLLKDLPDVEGDKAFGM-QTLCVLLGK  314 (396)
Q Consensus       284 ~~~~~~~~~d~~D~egD~~~G~-~Tlpv~lG~  314 (396)
                      ...+...+||+-|+|-|+++-+ +.-|..-|+
T Consensus        59 ~~~ag~~iND~~D~eiD~~n~rt~~RPl~sG~   90 (289)
T COG0382          59 ARSAGYVINDLADREIDRINPRTKNRPLPSGR   90 (289)
T ss_pred             HHHHhHHHHHHhhhhccCCCCCccCCCCCCCC
Confidence            3445678999999999998866 456666664

>TIGR00751 menA 1,4-dihydroxy-2-naphthoate octaprenyltransferase

Probab=80.18  E-value=20  Score=34.92  Aligned_cols=44  Identities=14%  Similarity=0.069  Sum_probs=28.4

Q ss_pred             HHHHHHHhhhhhhhchhhhhccCCCCccccCccCHHHHHHHHHHHH
Q 016056          149 IFMNISLCSLNQICDVEIDKINKPYLPLASGELSMGTGIAICAGSA  194 (396)
Q Consensus       149 ~l~~~a~~~iNd~~D~e~D~~n~p~RPl~sG~ls~~~a~~~~~~~~  194 (396)
                      .+...+....||..|+|.|+.+.++.. + -++.++.+..+...+.
T Consensus       174 g~l~~~il~~Nn~~D~~~D~~~Gk~Tl-~-v~lG~~~a~~l~~~l~  217 (284)
T TIGR00751       174 GLLACAVLNINNLRDIPTDARAGKNTL-A-VRLGDARTRMYHQGLL  217 (284)
T ss_pred             HHHHHHHHHHcCcccchhHHHcCCEee-h-hhcchHhHHHHHHHHH
Confidence            345567778999999999998865322 2 2455565555544333

This membrane-associated enzyme converts 1,4-dihydroxy-2-naphthoic acid (DHNA) to demethylmenaquinone, a step in menaquinone biosynthesis.

>PRK12884 ubiA prenyltransferase; Reviewed

Probab=80.11  E-value=14  Score=35.69  Aligned_cols=30  Identities=20%  Similarity=0.063  Sum_probs=24.0

Q ss_pred             HHHHHHHHHhCCChHHHHHcCCccchhhhcc
Q 016056          284 YAFVNGLLKDLPDVEGDKAFGMQTLCVLLGK  314 (396)
Q Consensus       284 ~~~~~~~~~d~~D~egD~~~G~~Tlpv~lG~  314 (396)
                      ...+-..+||+-|+|.|++. ++.-|..-|+
T Consensus        49 ~~~a~~~~Nd~~D~~~D~~~-r~~Rpl~~G~   78 (279)
T PRK12884         49 ASGSANALNDYFDYEVDRIN-RPDRPIPSGR   78 (279)
T ss_pred             HHHHHHHHHhhhhHhhhhcc-CCCCCCCCCC
Confidence            34455789999999999988 7777877775

>TIGR02056 ChlG chlorophyll synthase, ChlG

Probab=80.07  E-value=8.2  Score=38.00  Aligned_cols=39  Identities=26%  Similarity=0.374  Sum_probs=25.8

Q ss_pred             HHHHHHHhhhhhhhchhhhhccCC-CCccccCccCHHHHHHHH
Q 016056          149 IFMNISLCSLNQICDVEIDKINKP-YLPLASGELSMGTGIAIC  190 (396)
Q Consensus       149 ~l~~~a~~~iNd~~D~e~D~~n~p-~RPl~sG~ls~~~a~~~~  190 (396)
                      .+...+....||+.|+|.|+.++. .-|..   +.++.+....
T Consensus       193 ~l~~~~i~~~n~~~D~e~D~~~G~~Tlpv~---lG~~~a~~~~  232 (306)
T TIGR02056       193 SIAGLGIAIVNDFKSVEGDRALGLQSLPVA---FGIETAAWIC  232 (306)
T ss_pred             HHHHHHHHHHHHccChHHHHHcCCcCcchh---cChHHHHHHH
Confidence            456667788999999999998754 44443   3344444433

This model represents the strictly cyanobacterial and plant-specific chlorophyll synthase ChlG. ChlG is the enzyme (esterase) which attaches the side chain moiety onto chlorophyllide a. Both geranylgeranyl and phytyl pyrophosphates are substrates to varying degrees in enzymes from different sources. Thus, ChlG may act as the final or penultimate step in chlorophyll biosynthesis (along with the geranylgeranyl reductase, ChlP).

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00