Citrus Sinensis ID: 016064

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390------
MWHRSASFILDKNQNDTVYPADSVTLTPPPPSSISTPQNPNPNLNRNMSMSAYYQTRAAHHGVVTSDWLAQSQEAATRAVATGGQEIVDGGKSGRAFSVIDEFNNWRKQPDLAEAVAAIRALAAVIRNSEAKTMMELEIELKKASDSLKSWDTTSISLTAGCDLFMRYVTRTSALEYEDFNSARSRLIERAEKFGEISYKARKIIAMLSQDFIFDGCTILVHGFSRVVMEVLKMAAQNKKLFRVLCTEGRPDRSGLRLANELAKLDVPVKLLIDSAVAYTMDEVDMVFVGADGVVESGGIINMMGTYQIALVAHSMNKPVYVAAESYKFARLYPLDQKDMGPALRPIDFGVPIPSKVEVETSARDYTPPQYLTLLFTDLGVLTPSVVSDELIQLYL
cccccccEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHccccccHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccEEEEEccccHHHHHHHHHHHcccEEEEEEEcccccHHHHHHHHHHHHccccEEEEcHHHHHHHcccccEEEEcccEEcccccHHHHHHHHHHHHHHHHccccEEEEccccccccccccccccccccccccccccccccccccccccccccccccccEEEEccccccccHHHHHHHHHcc
cccccHHHHEccccccccccccccccccccccccccccccccccccccccEEEEEEHHHHcccccHHHHHHHHHHHccccccccccEEEEEEEccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccEEEEcccHHHHHHHHHHHHHccccEEEEEcccccHHHHHHHHHHHHHccccEEEEEcHHHHHHHHHccEEEEccHHHHHcccHHHHHHHHHHHHHHHHccccEEEEEccccccccccccccccHHEEEcccccEEcccccEEEccccccccHHHHHHHHHcccccccHHHHHHHHHHcc
mwhrsasfildknqndtvypadsvtltppppssistpqnpnpnlnrnmsMSAYYQTRAAHhgvvtsdwlAQSQEAATRAVATggqeivdggksgrAFSVIDefnnwrkqpDLAEAVAAIRALAAVIRNSEAKTMMELEIELKKASDslkswdttsisLTAGCDLFMRYVTRTSALEYEDFNSARSRLIERAEKFGEISYKARKIIAMLSQDFIFDGCTILVHGFSRVVMEVLKMAAQNKKLFRVLCtegrpdrsglRLANELAKLDVPVKLLIDSAVAYTMDEVDMVFVGADGVVESGGIINMMGTYQIALVAHSMNKPVYVAAESykfarlypldqkdmgpalrpidfgvpipskvevetsardytppqyLTLLFTDlgvltpsvvsDELIQLYL
MWHRSASfildknqndtvYPADSVTLTPPPPSSISTPQNPNPNLNRNMSMSAYYQTRAAHHGVVTSDWLAQSQEAATRAVATggqeivdggksGRAFSVIDEFNNWRKQPDLAEAVAAIRALAAVIRNSEAKTMMELEIELKkasdslkswdttsisltagCDLFMRYVTRTSALEYEDFNSARSRLIERAEKFGEISYKARKIIAMLSQDFIFDGCTILVHGFSRVVMEVLKMAAQNKKLFRVLCTegrpdrsglrlanelakldvpVKLLIDSAVAYTMDEVDMVFVGADGVVESGGIINMMGTYQIALVAHSMNKPVYVAAESYKFARLYPLDQKDMGPALRPIDFGVPIPSKVEVETSARDYTPPQYLTLLFTDLGVLTPSVVSDELIQLYL
MWHRSASFILDKNQNDTVYPADSVtltppppssistpqnpnpnLNRNMSMSAYYQTRAAHHGVVTSDWLAQSQEAATRAVATGGQEIVDGGKSGRAFSVIDEFNNWRKQPDlaeavaairalaavirNSEAKTMMELEIELKKASDSLKSWDTTSISLTAGCDLFMRYVTRTSALEYEDFNSARSRLIERAEKFGEISYKARKIIAMLSQDFIFDGCTILVHGFSRVVMEVLKMAAQNKKLFRVLCTEGRPDRSGLRLANELAKLDVPVKLLIDSAVAYTMDEVDMVFVGADGVVESGGIINMMGTYQIALVAHSMNKPVYVAAESYKFARLYPLDQKDMGPALRPIDFGVPIPSKVEVETSARDYTPPQYLTLLFTDLGVLTPSVVSDELIQLYL
****************************************************YYQTRAAHHGVVTSDWLAQSQEAATRAVATGGQEIVDGGKSGRAFSVIDEFNNWRKQPDLAEAVAAIRALAAVIRNSEAKTMMELEIELK***DSLKSWDTTSISLTAGCDLFMRYVTRTSALEYEDFNSARSRLIERAEKFGEISYKARKIIAMLSQDFIFDGCTILVHGFSRVVMEVLKMAAQNKKLFRVLCTEGRPDRSGLRLANELAKLDVPVKLLIDSAVAYTMDEVDMVFVGADGVVESGGIINMMGTYQIALVAHSMNKPVYVAAESYKFARLYPLDQKDMGPALRPIDFGVPIPSKVEVETSARDYTPPQYLTLLFTDLGVLTPSVVSDELIQL**
*****AS*************************************************RAAHHGVVTSDWLAQSQEAATRAVATGGQEIVDGGKSGRAFSVIDEFNNWRKQPDLAEAVAAIRALAAVIRNSEAKTMMELEIELKKASDSLKSWDTTSISLTAGCDLFMRYVTRTSALEYEDFNSARSRLIERAEKFGEISYKARKIIAMLSQDFIFDGCTILVHGFSRVVMEVLKMAAQNKKLFRVLCTEGRPDRSGLRLANELAKLDVPVKLLIDSAVAYTMDEVDMVFVGADGVVESGGIINMMGTYQIALVAHSMNKPVYVAAESYKFARLYPLDQKDMGPALRPIDFGVPIPSKVEVETSARDYTPPQYLTLLFTDLGVLTPSVVSDELIQLYL
MWHRSASFILDKNQNDTVYPADSVTLT*********PQNPNPNLNRNMSMSAYYQTRAAHHGVVTSDWLAQSQEAATRAVATGGQEIVDGGKSGRAFSVIDEFNNWRKQPDLAEAVAAIRALAAVIRNSEAKTMMELEIELKKASDSLKSWDTTSISLTAGCDLFMRYVTRTSALEYEDFNSARSRLIERAEKFGEISYKARKIIAMLSQDFIFDGCTILVHGFSRVVMEVLKMAAQNKKLFRVLCTEGRPDRSGLRLANELAKLDVPVKLLIDSAVAYTMDEVDMVFVGADGVVESGGIINMMGTYQIALVAHSMNKPVYVAAESYKFARLYPLDQKDMGPALRPIDFGVPIPSKVEVETSARDYTPPQYLTLLFTDLGVLTPSVVSDELIQLYL
*****************************************PNLNRNMSMSAYYQTRAAHHGVVTSDWLAQSQEAATRAVATGGQEIVDGGKSGRAFSVIDEFNNWRKQPDLAEAVAAIRALAAVIRNSEAKTMMELEIELKKASDSLKSWDTTSISLTAGCDLFMRYVTRTSALEYEDFNSARSRLIERAEKFGEISYKARKIIAMLSQDFIFDGCTILVHGFSRVVMEVLKMAAQNKKLFRVLCTEGRPDRSGLRLANELAKLDVPVKLLIDSAVAYTMDEVDMVFVGADGVVESGGIINMMGTYQIALVAHSMNKPVYVAAESYKFARLYPLDQKDMGPALRPIDFGVPIPSKVEVETSARDYTPPQYLTLLFTDLGVLTPSVVSDELIQLYL
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MWHRSASFILDKNQNDTVYPADSVTLTPPPPSSISTPQNPNPNLNRNMSMSAYYQTRAAHHGVVTSDWLAQSQEAATRAVATGGQEIVDGGKSGRAFSVIDEFNNWRKQPDLAEAVAAIRALAAVIRNSEAKTxxxxxxxxxxxxxxxxxxxxxSISLTAGCDLFMRYVTRTSALEYEDFNSARSRLIERAEKFGEISYKARKIIAMLSQDFIFDGCTILVHGFSRVVMEVLKMAAQNKKLFRVLCTEGRPDRSGLRLANELAKLDVPVKLLIDSAVAYTMDEVDMVFVGADGVVESGGIINMMGTYQIALVAHSMNKPVYVAAESYKFARLYPLDQKDMGPALRPIDFGVPIPSKVEVETSARDYTPPQYLTLLFTDLGVLTPSVVSDELIQLYL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query396 2.2.26 [Sep-21-2011]
Q54I81321 Translation initiation fa yes no 0.727 0.897 0.458 1e-69
Q0IIF2305 Translation initiation fa yes no 0.734 0.954 0.459 1e-65
Q64270305 Translation initiation fa yes no 0.724 0.940 0.45 5e-65
Q4R4V8305 Translation initiation fa N/A no 0.747 0.970 0.450 9e-65
Q5RAR0305 Translation initiation fa yes no 0.747 0.970 0.450 9e-65
Q14232305 Translation initiation fa yes no 0.747 0.970 0.450 9e-65
Q99LC8305 Translation initiation fa yes no 0.734 0.954 0.446 3e-63
P14741305 Translation initiation fa yes no 0.696 0.904 0.436 4e-58
Q9USP0341 Translation initiation fa yes no 0.752 0.873 0.394 1e-54
P34604305 Probable translation init yes no 0.742 0.963 0.352 2e-45
>sp|Q54I81|EI2BA_DICDI Translation initiation factor eIF-2B subunit alpha OS=Dictyostelium discoideum GN=eif2b1 PE=3 SV=1 Back     alignment and function desciption
 Score =  264 bits (674), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 138/301 (45%), Positives = 198/301 (65%), Gaps = 13/301 (4%)

Query: 107 RKQPDLAEAVAAIRALAAVIRNSEAKTMMELEIELKKASDSLKSWD-TTSISLTAGCDLF 165
           +++ +++ A+  IR L  VIR S + T++ L+ EL+ A   LKS     SISL++ CD F
Sbjct: 21  KRETEVSIAIPTIRILIDVIRKSNSTTVVGLQKELEDAVKQLKSCPYNQSISLSSVCDSF 80

Query: 166 MRYVTRTSALEYEDFNSARSRLIERAEKFGEISYKARKIIAMLSQDFIFDGCTILVHGFS 225
           +R+VT+ + L++ +F++ +S L+ER E+    S  +R  I+ L+  FI DG TILVHGFS
Sbjct: 81  IRFVTKRTELDFPNFDTCKSNLVERGEQLSNKSSMSRTKISQLADKFIRDGVTILVHGFS 140

Query: 226 RVVMEVLKMAAQNKKLFRVLCTEGRPDRSGLRLANELAKLDVPVKLLIDSAVAYTMDEVD 285
           RVV+ +L  AA   K F V+ TE RPD SG + A  L   ++PVKL++D  V+  +D+VD
Sbjct: 141 RVVLGLLLHAAFQGKRFSVIVTESRPDSSGYKTAARLQAANIPVKLIMDGGVSRIIDKVD 200

Query: 286 MVFVGADGVVESGGIINMMGTYQIALVAHSMNKPVYVAAESYKFARLYPLDQKDMGPALR 345
            V VGA+ +VE+GGI+N +GTYQI++VA +  KP YVAAES+KF R YPL+Q D+   L+
Sbjct: 201 YVLVGAEAIVENGGIVNKIGTYQISIVAKAFKKPFYVAAESFKFTRSYPLNQSDI-ENLK 259

Query: 346 PIDFGVPI-----------PSKVEVETSARDYTPPQYLTLLFTDLGVLTPSVVSDELIQL 394
                 P            P ++ +++   DYTPP Y+TLLFT+LGVLTPS VSDELI+L
Sbjct: 260 NDHISEPFKACRSCSSCENPEQLTIDSPTLDYTPPSYITLLFTELGVLTPSAVSDELIKL 319

Query: 395 Y 395
           Y
Sbjct: 320 Y 320
Catalyzes the exchange of eukaryotic initiation factor 2-bound GDP for GTP.
Dictyostelium discoideum (taxid: 44689)
>sp|Q0IIF2|EI2BA_BOVIN Translation initiation factor eIF-2B subunit alpha OS=Bos taurus GN=EIF2B1 PE=2 SV=1 Back     alignment and function description
>sp|Q64270|EI2BA_RAT Translation initiation factor eIF-2B subunit alpha OS=Rattus norvegicus GN=Eif2b1 PE=2 SV=1 Back     alignment and function description
>sp|Q4R4V8|EI2BA_MACFA Translation initiation factor eIF-2B subunit alpha OS=Macaca fascicularis GN=EIF2B1 PE=2 SV=1 Back     alignment and function description
>sp|Q5RAR0|EI2BA_PONAB Translation initiation factor eIF-2B subunit alpha OS=Pongo abelii GN=EIF2B1 PE=2 SV=2 Back     alignment and function description
>sp|Q14232|EI2BA_HUMAN Translation initiation factor eIF-2B subunit alpha OS=Homo sapiens GN=EIF2B1 PE=1 SV=1 Back     alignment and function description
>sp|Q99LC8|EI2BA_MOUSE Translation initiation factor eIF-2B subunit alpha OS=Mus musculus GN=Eif2b1 PE=2 SV=1 Back     alignment and function description
>sp|P14741|EI2BA_YEAST Translation initiation factor eIF-2B subunit alpha OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=GCN3 PE=1 SV=1 Back     alignment and function description
>sp|Q9USP0|EI2BA_SCHPO Translation initiation factor eIF-2B subunit alpha OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=tif221 PE=3 SV=1 Back     alignment and function description
>sp|P34604|EI2BA_CAEEL Probable translation initiation factor eIF-2B subunit alpha OS=Caenorhabditis elegans GN=ZK1098.4 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query396
359482879389 PREDICTED: translation initiation factor 0.979 0.997 0.841 0.0
297742934 579 unnamed protein product [Vitis vinifera] 0.979 0.670 0.841 0.0
255584446398 translation initiation factor eif-2b alp 0.979 0.974 0.837 0.0
224074099396 predicted protein [Populus trichocarpa] 0.987 0.987 0.835 0.0
147793046356 hypothetical protein VITISV_043716 [Viti 0.891 0.991 0.872 1e-180
224119686396 predicted protein [Populus trichocarpa] 0.987 0.987 0.840 1e-178
449447952394 PREDICTED: translation initiation factor 0.984 0.989 0.817 1e-178
297847792 577 predicted protein [Arabidopsis lyrata su 0.972 0.667 0.803 1e-176
79365595 580 eukaryotic translation initiation factor 0.972 0.663 0.800 1e-175
356506128382 PREDICTED: translation initiation factor 0.939 0.973 0.795 1e-172
>gi|359482879|ref|XP_002271332.2| PREDICTED: translation initiation factor eIF-2B subunit alpha-like [Vitis vinifera] Back     alignment and taxonomy information
 Score =  666 bits (1719), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 334/397 (84%), Positives = 353/397 (88%), Gaps = 9/397 (2%)

Query: 1   MWHRSASFILDKNQNDTVY-PADSVTLTPPPPSSISTPQNPNPNLNRNMSMSAYYQTRAA 59
           MW RSASFILDK QND V   ++S+ L+P   S   T QNPNP +      SAYYQTRA 
Sbjct: 1   MWWRSASFILDKGQNDEVQDESESLRLSPSNTSMADTLQNPNPKI------SAYYQTRAD 54

Query: 60  HHGVVTSDWLAQSQEAATRAVATGGQEIVDGGKSGRAFSVIDEFNNWRKQPDLAEAVAAI 119
           HHGVVTSDWLAQ+Q A  R         V+   SG+ FSVIDEFN+WRKQPDLAEAVAAI
Sbjct: 55  HHGVVTSDWLAQAQAAVGRHPDDLPPPKVE--DSGKPFSVIDEFNSWRKQPDLAEAVAAI 112

Query: 120 RALAAVIRNSEAKTMMELEIELKKASDSLKSWDTTSISLTAGCDLFMRYVTRTSALEYED 179
           RALA+VIR S+A TMMELEIELKKASDSLKSWDTTSISLTAGCDLFMRYVTRTSALEYE+
Sbjct: 113 RALASVIRFSQATTMMELEIELKKASDSLKSWDTTSISLTAGCDLFMRYVTRTSALEYEN 172

Query: 180 FNSARSRLIERAEKFGEISYKARKIIAMLSQDFIFDGCTILVHGFSRVVMEVLKMAAQNK 239
           FNSA+SRLIERAE+FGEISYKAR+IIAML QDFIFDGCTILVHGFSRVV+EVLK AAQNK
Sbjct: 173 FNSAKSRLIERAERFGEISYKARRIIAMLGQDFIFDGCTILVHGFSRVVLEVLKTAAQNK 232

Query: 240 KLFRVLCTEGRPDRSGLRLANELAKLDVPVKLLIDSAVAYTMDEVDMVFVGADGVVESGG 299
           KLFRV CTEGRPDR+GLRL+NE+AKLDVPVKLLIDSAVAYTMDEVDMVFVGADGVVESGG
Sbjct: 233 KLFRVFCTEGRPDRTGLRLSNEMAKLDVPVKLLIDSAVAYTMDEVDMVFVGADGVVESGG 292

Query: 300 IINMMGTYQIALVAHSMNKPVYVAAESYKFARLYPLDQKDMGPALRPIDFGVPIPSKVEV 359
           IINMMGTYQIALVAHSMNKPVYVAAESYKFARLYPLDQKDM PALRPIDFGVPIPSKVEV
Sbjct: 293 IINMMGTYQIALVAHSMNKPVYVAAESYKFARLYPLDQKDMAPALRPIDFGVPIPSKVEV 352

Query: 360 ETSARDYTPPQYLTLLFTDLGVLTPSVVSDELIQLYL 396
           ETSARDYTPPQYLTLLFTDLGVLTPSVVSDELIQLYL
Sbjct: 353 ETSARDYTPPQYLTLLFTDLGVLTPSVVSDELIQLYL 389

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|297742934|emb|CBI35801.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|255584446|ref|XP_002532954.1| translation initiation factor eif-2b alpha subunit, putative [Ricinus communis] gi|223527283|gb|EEF29438.1| translation initiation factor eif-2b alpha subunit, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|224074099|ref|XP_002304252.1| predicted protein [Populus trichocarpa] gi|222841684|gb|EEE79231.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|147793046|emb|CAN62132.1| hypothetical protein VITISV_043716 [Vitis vinifera] Back     alignment and taxonomy information
>gi|224119686|ref|XP_002331221.1| predicted protein [Populus trichocarpa] gi|222873342|gb|EEF10473.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|449447952|ref|XP_004141730.1| PREDICTED: translation initiation factor eIF-2B subunit alpha-like [Cucumis sativus] gi|449480452|ref|XP_004155897.1| PREDICTED: translation initiation factor eIF-2B subunit alpha-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|297847792|ref|XP_002891777.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297337619|gb|EFH68036.1| predicted protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|79365595|ref|NP_564643.2| eukaryotic translation initiation factor 2B-like protein [Arabidopsis thaliana] gi|79365631|ref|NP_564646.3| eukaryotic translation initiation factor 2B-like protein [Arabidopsis thaliana] gi|332194893|gb|AEE33014.1| eukaryotic translation initiation factor 2B-like protein [Arabidopsis thaliana] gi|332194899|gb|AEE33020.1| eukaryotic translation initiation factor 2B-like protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|356506128|ref|XP_003521839.1| PREDICTED: translation initiation factor eIF-2B subunit alpha-like [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query396
TAIR|locus:2197046580 AT1G53880 "AT1G53880" [Arabido 0.972 0.663 0.742 1.7e-146
TAIR|locus:2814880580 AT1G53900 "AT1G53900" [Arabido 0.972 0.663 0.742 1.7e-146
TAIR|locus:2193932382 AT1G72340 "AT1G72340" [Arabido 0.954 0.989 0.732 6.6e-145
UNIPROTKB|Q0IN89299 Os12g0497400 "Os12g0497400 pro 0.679 0.899 0.866 5.2e-120
UNIPROTKB|A8JA68285 EIF2Ba "Eukaryotic initiation 0.676 0.940 0.552 3.6e-73
DICTYBASE|DDB_G0288961321 eif2b1 "translation initiation 0.671 0.828 0.469 2.2e-59
UNIPROTKB|F1NLG8302 LOC100857736 "Uncharacterized 0.744 0.976 0.44 7.3e-59
UNIPROTKB|F1RFL6305 EIF2B1 "Uncharacterized protei 0.747 0.970 0.433 1.6e-56
RGD|620819305 Eif2b1 "eukaryotic translation 0.666 0.865 0.476 4.2e-56
UNIPROTKB|F1P8M6305 EIF2B1 "Uncharacterized protei 0.747 0.970 0.427 6.8e-56
TAIR|locus:2197046 AT1G53880 "AT1G53880" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1431 (508.8 bits), Expect = 1.7e-146, P = 1.7e-146
 Identities = 294/396 (74%), Positives = 318/396 (80%)

Query:     1 MWHRSASFILDKNQNDTVYPADSVXXXXXXXXXXXXXXXXXXXLNRNMSMSAYYQTRAAH 60
             MW  SASFILDK+QN+   P                        N N  +SAYYQTRAAH
Sbjct:   196 MWRESASFILDKHQNNK--PISLTHSIDSPPPPSASMADENP--NPN-PISAYYQTRAAH 250

Query:    61 HGVVTSDWLAQSQEAATRAVATGGQEIVDGGKSGRAFSVIDEFNNWRKQPDXXXXXXXXX 120
             HG+VTS+WL Q+Q A  R          D   SGR FSVI++FN+WR+QPD         
Sbjct:   251 HGIVTSEWLEQAQAAVRRYPDR------DSLVSGRPFSVIEDFNSWRQQPDLAEAVAAIR 304

Query:   121 XXXXXXXNSEAKTMMELEIELKKASDSLKSWDTTSISLTAGCDLFMRYVTRTSALEYEDF 180
                     SEA TMMELEIELKKASD+LKSWDTTSISLTAGCDLFMRYVTRTSALE+EDF
Sbjct:   305 ALAAVIRASEATTMMELEIELKKASDTLKSWDTTSISLTAGCDLFMRYVTRTSALEFEDF 364

Query:   181 NSARSRLIERAEKFGEISYKARKIIAMLSQDFIFDGCTILVHGFSRVVMEVLKMAAQNKK 240
             NSA+SR++ERAEKFGEIS KAR IIAMLSQDFIFDGCTILVHGFSRVV E+LK +AQNKK
Sbjct:   365 NSAKSRVLERAEKFGEISCKARTIIAMLSQDFIFDGCTILVHGFSRVVFEILKTSAQNKK 424

Query:   241 LFRVLCTEGRPDRSGLRLANELAKLDVPVKLLIDSAVAYTMDEVDMVFVGADGVVESGGI 300
             LFRVLCTEGRPD++G+ LANELAKLD+PVKLLIDSAVAY+MDEVDMVFVGADGVVESGGI
Sbjct:   425 LFRVLCTEGRPDKTGVLLANELAKLDIPVKLLIDSAVAYSMDEVDMVFVGADGVVESGGI 484

Query:   301 INMMGTYQIALVAHSMNKPVYVAAESYKFARLYPLDQKDMGPALRPIDFGVPIPSKVEVE 360
             INMMGTYQIALVA SMNKPVYVAAESYKFARLYPLDQKD+ PALRPIDF VP+P KVEVE
Sbjct:   485 INMMGTYQIALVAQSMNKPVYVAAESYKFARLYPLDQKDLEPALRPIDFSVPVPPKVEVE 544

Query:   361 TSARDYTPPQYLTLLFTDLGVLTPSVVSDELIQLYL 396
              SARDYTPPQYLTLLFTDLGVLTPSVVSDELIQLYL
Sbjct:   545 RSARDYTPPQYLTLLFTDLGVLTPSVVSDELIQLYL 580
GO:0003743 "translation initiation factor activity" evidence=ISS;IBA
GO:0005085 "guanyl-nucleotide exchange factor activity" evidence=IBA
GO:0005525 "GTP binding" evidence=ISS
GO:0005851 "eukaryotic translation initiation factor 2B complex" evidence=ISS;IBA
GO:0006413 "translational initiation" evidence=ISS
GO:0006446 "regulation of translational initiation" evidence=IBA
GO:0044237 "cellular metabolic process" evidence=IEA
GO:0050790 "regulation of catalytic activity" evidence=IBA
TAIR|locus:2814880 AT1G53900 "AT1G53900" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2193932 AT1G72340 "AT1G72340" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q0IN89 Os12g0497400 "Os12g0497400 protein" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
UNIPROTKB|A8JA68 EIF2Ba "Eukaryotic initiation factor" [Chlamydomonas reinhardtii (taxid:3055)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0288961 eif2b1 "translation initiation factor eIF-2B alpha subunit" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
UNIPROTKB|F1NLG8 LOC100857736 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|F1RFL6 EIF2B1 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
RGD|620819 Eif2b1 "eukaryotic translation initiation factor 2B, subunit 1 alpha" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|F1P8M6 EIF2B1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
gw1.III.1300.1
hypothetical protein (396 aa)
(Populus trichocarpa)
Predicted Functional Partners:
grail3.0022009302
hypothetical protein (343 aa)
   •••• 0.870
estExt_fgenesh4_pm.C_LG_VIII0284
hypothetical protein (343 aa)
   •••• 0.870
eugene3.00030772
hypothetical protein (464 aa)
   •••• 0.866
estExt_Genewise1_v1.C_290097
hypothetical protein (465 aa)
   •••• 0.866
estExt_fgenesh4_pm.C_LG_XIII0470
SubName- Full=Putative uncharacterized protein; (271 aa)
    ••• 0.835
fgenesh4_pg.C_scaffold_1866000002
annotation not avaliable (150 aa)
    ••  0.807
gw1.70.387.1
hypothetical protein (718 aa)
   •••• 0.650

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query396
pfam01008281 pfam01008, IF-2B, Initiation factor 2 subunit fami 3e-80
COG1184301 COG1184, GCD2, Translation initiation factor 2B su 6e-75
PRK08535310 PRK08535, PRK08535, translation initiation factor 4e-50
TIGR00511301 TIGR00511, ribulose_e2b2, ribose-1,5-bisphosphate 9e-43
TIGR00524303 TIGR00524, eIF-2B_rel, eIF-2B alpha/beta/delta-rel 2e-40
PRK08335275 PRK08335, PRK08335, translation initiation factor 4e-33
COG0182346 COG0182, COG0182, Predicted translation initiation 2e-30
PRK06036339 PRK06036, PRK06036, translation initiation factor 1e-28
TIGR00512331 TIGR00512, salvage_mtnA, S-methyl-5-thioribose-1-p 2e-22
PRK05720344 PRK05720, mtnA, methylthioribose-1-phosphate isome 2e-20
PRK06371329 PRK06371, PRK06371, translation initiation factor 9e-18
PRK05772363 PRK05772, PRK05772, translation initiation factor 2e-15
PRK08334356 PRK08334, PRK08334, translation initiation factor 4e-15
PRK06372253 PRK06372, PRK06372, translation initiation factor 4e-13
>gnl|CDD|216240 pfam01008, IF-2B, Initiation factor 2 subunit family Back     alignment and domain information 
 Score =  247 bits (633), Expect = 3e-80
 Identities = 109/281 (38%), Positives = 159/281 (56%), Gaps = 7/281 (2%)

Query: 109 QPDLAEAVAAIRALAAVIRNSEAKTMMELEIELKKASDSLKSWDTTSISLTAGCDLFMRY 168
           +   A A+AA+  L  VI+++   T+ EL+ +L+ A + L S   T++SL    D  +R 
Sbjct: 3   RGSPAIAIAALEGLLLVIQDARTPTVAELKEQLRSAIEFLISARPTAVSLGNAIDRLLRI 62

Query: 169 VTRTSALEYEDFNSARSRLIERAEKFGEISYKARKIIAMLSQDFIFDGCTILVHGFSRVV 228
           ++        D   A+  LIE A++F +   +AR+ I  ++ + I DG TIL H  S  V
Sbjct: 63  IS--ELHSSSDVEEAKESLIEAADEFIDEIEEARRKIGAIAAELIKDGDTILTHCNSGTV 120

Query: 229 MEVLKMAAQNKKLFRVLCTEGRPDRSGLRLANELAKLDVPVKLLIDSAVAYTMDEVDMVF 288
           + VL+ A +  K FRV+ TE RP   G   A EL +  +PV L+ DSAV Y M EVD V 
Sbjct: 121 LGVLRAAHKEGKRFRVIVTESRPRLQGRLTAKELVQAGIPVTLITDSAVGYVMQEVDKVI 180

Query: 289 VGADGVVESGGIINMMGTYQIALVAHSMNKPVYVAAESYKFARLYPLDQKDM----GPA- 343
           VGAD ++ +GGI N +GTYQ+AL+A + N P YV AE+YKF   +PLD+        P  
Sbjct: 181 VGADRILANGGIANKIGTYQLALLAKAHNVPFYVVAETYKFDPRFPLDEDIFIEERDPEE 240

Query: 344 LRPIDFGVPIPSKVEVETSARDYTPPQYLTLLFTDLGVLTP 384
           +         P  ++V   A DYTPP+ +TL+ T++GVL P
Sbjct: 241 VLYRTGVRIAPENLKVRNPAFDYTPPELITLIITEVGVLPP 281

This family includes initiation factor 2B alpha, beta and delta subunits from eukaryotes, initiation factor 2B subunits 1 and 2 from archaebacteria and some proteins of unknown function from prokaryotes. Initiation factor 2 binds to Met-tRNA, GTP and the small ribosomal subunit. Members of this family have also been characterized as 5-methylthioribose- 1-phosphate isomerases, an enzyme of the methionine salvage pathway. The crystal structure of Ypr118w, a non-essential, low-copy number gene product from Saccharomyces cerevisiae, reveals a dimeric protein with two domains and a putative active site cleft. Length = 281
>gnl|CDD|224105 COG1184, GCD2, Translation initiation factor 2B subunit, eIF-2B alpha/beta/delta family [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|236282 PRK08535, PRK08535, translation initiation factor IF-2B subunit delta; Provisional Back     alignment and domain information
>gnl|CDD|188057 TIGR00511, ribulose_e2b2, ribose-1,5-bisphosphate isomerase, e2b2 family Back     alignment and domain information
>gnl|CDD|233008 TIGR00524, eIF-2B_rel, eIF-2B alpha/beta/delta-related uncharacterized proteins Back     alignment and domain information
>gnl|CDD|169387 PRK08335, PRK08335, translation initiation factor IF-2B subunit alpha; Validated Back     alignment and domain information
>gnl|CDD|223260 COG0182, COG0182, Predicted translation initiation factor 2B subunit, eIF-2B alpha/beta/delta family [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|180362 PRK06036, PRK06036, translation initiation factor IF-2B subunit alpha; Provisional Back     alignment and domain information
>gnl|CDD|233003 TIGR00512, salvage_mtnA, S-methyl-5-thioribose-1-phosphate isomerase Back     alignment and domain information
>gnl|CDD|235578 PRK05720, mtnA, methylthioribose-1-phosphate isomerase; Reviewed Back     alignment and domain information
>gnl|CDD|180547 PRK06371, PRK06371, translation initiation factor IF-2B subunit alpha; Provisional Back     alignment and domain information
>gnl|CDD|168237 PRK05772, PRK05772, translation initiation factor IF-2B subunit alpha; Provisional Back     alignment and domain information
>gnl|CDD|169386 PRK08334, PRK08334, translation initiation factor IF-2B subunit beta; Validated Back     alignment and domain information
>gnl|CDD|235788 PRK06372, PRK06372, translation initiation factor IF-2B subunit delta; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 396
KOG1466313 consensus Translation initiation factor 2B, alpha 100.0
TIGR00511301 ribulose_e2b2 ribose-1,5-bisphosphate isomerase, e 100.0
PRK08535310 translation initiation factor IF-2B subunit delta; 100.0
PRK05720344 mtnA methylthioribose-1-phosphate isomerase; Revie 100.0
PRK05772363 translation initiation factor IF-2B subunit alpha; 100.0
TIGR00512331 salvage_mtnA S-methyl-5-thioribose-1-phosphate iso 100.0
COG1184301 GCD2 Translation initiation factor 2B subunit, eIF 100.0
TIGR00524303 eIF-2B_rel eIF-2B alpha/beta/delta-related unchara 100.0
PRK06036339 translation initiation factor IF-2B subunit alpha; 100.0
PRK08334356 translation initiation factor IF-2B subunit beta; 100.0
PF01008282 IF-2B: Initiation factor 2 subunit family; InterPr 100.0
PRK08335275 translation initiation factor IF-2B subunit alpha; 100.0
PRK06371329 translation initiation factor IF-2B subunit alpha; 100.0
COG0182346 Predicted translation initiation factor 2B subunit 100.0
KOG1467556 consensus Translation initiation factor 2B, delta 100.0
KOG1465353 consensus Translation initiation factor 2B, beta s 100.0
KOG1468354 consensus Predicted translation initiation factor 100.0
PRK06372253 translation initiation factor IF-2B subunit delta; 100.0
PRK00702220 ribose-5-phosphate isomerase A; Provisional 97.84
PRK10434256 srlR DNA-bindng transcriptional repressor SrlR; Pr 97.8
TIGR00021218 rpiA ribose 5-phosphate isomerase. This model desc 97.78
cd01398213 RPI_A RPI_A: Ribose 5-phosphate isomerase type A ( 97.75
PF00455161 DeoRC: DeoR C terminal sensor domain; InterPro: IP 97.71
PRK09802269 DNA-binding transcriptional regulator AgaR; Provis 97.59
PRK13509251 transcriptional repressor UlaR; Provisional 97.45
PRK10906252 DNA-binding transcriptional repressor GlpR; Provis 97.44
PRK10411240 DNA-binding transcriptional activator FucR; Provis 97.26
PRK10681252 DNA-binding transcriptional repressor DeoR; Provis 96.84
COG1349253 GlpR Transcriptional regulators of sugar metabolis 96.66
PLN02384264 ribose-5-phosphate isomerase 95.91
PRK13978228 ribose-5-phosphate isomerase A; Provisional 95.08
COG0120227 RpiA Ribose 5-phosphate isomerase [Carbohydrate tr 92.3
KOG0259 447 consensus Tyrosine aminotransferase [Amino acid tr 92.05
COG2057225 AtoA Acyl CoA:acetate/3-ketoacid CoA transferase, 91.38
PRK14101638 bifunctional glucokinase/RpiR family transcription 87.49
PRK10886196 DnaA initiator-associating protein DiaA; Provision 87.39
KOG3075261 consensus Ribose 5-phosphate isomerase [Carbohydra 86.6
PF02254116 TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg 86.47
PRK11557278 putative DNA-binding transcriptional regulator; Pr 86.0
TIGR01437 363 selA_rel uncharacterized pyridoxal phosphate-depen 84.58
PF01073280 3Beta_HSD: 3-beta hydroxysteroid dehydrogenase/iso 84.48
PRK11337292 DNA-binding transcriptional repressor RpiR; Provis 82.51
TIGR03402 379 FeS_nifS cysteine desulfurase NifS. Members of thi 81.67
cd01989146 STK_N The N-terminal domain of Eukaryotic Serine T 81.5
PLN02651 364 cysteine desulfurase 81.22
cd01424110 MGS_CPS_II Methylglyoxal synthase-like domain from 80.79
TIGR01470205 cysG_Nterm siroheme synthase, N-terminal domain. T 80.68
>KOG1466 consensus Translation initiation factor 2B, alpha subunit (eIF-2Balpha/GCN3) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information 
Probab=100.00  E-value=1.1e-78  Score=571.72  Aligned_cols=307  Identities=64%  Similarity=0.960  Sum_probs=296.7

Q ss_pred             CCCCcchhhHHHHHHHHh-cCCChHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHH
Q 016064           90 GGKSGRAFSVIDEFNNWR-KQPDLAEAVAAIRALAAVIRNSEAKTMMELEIELKKASDSLKSWDTTSISLTAGCDLFMRY  168 (396)
Q Consensus        90 ~~~~~~~~~vI~~~~~~l-~~~~ia~~IAAi~aL~~vI~~~~~~t~~eL~~~L~~~~~~L~~aRPt~v~L~na~~~f~r~  168 (396)
                      +...+.+|++|+.|++|+ .||++++++|||++|.++|+.++++|.+||..+|+.+.+.|+.+.++.+++.+||++|+||
T Consensus         4 ~~~~~~~f~iie~f~~~l~eDpd~a~~vAAIraL~~vL~~s~a~Ti~el~~~l~~a~~tL~~~d~ss~Sl~agcdlF~Rf   83 (313)
T KOG1466|consen    4 SLVSMREFSIIEYFLSFLQEDPDLAMAVAAIRALLEVLRRSQATTIAELENELKSASATLKKTDTSSISLRAGCDLFMRF   83 (313)
T ss_pred             ccccCCcchHHHHHHHHHhcCchhhhHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHccCccchhhhhhhHHHHHH
Confidence            455688999999999999 8899999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCceEEeecChHHHHHHHHHHHHCCCeeEEEEeC
Q 016064          169 VTRTSALEYEDFNSARSRLIERAEKFGEISYKARKIIAMLSQDFIFDGCTILVHGFSRVVMEVLKMAAQNKKLFRVLCTE  248 (396)
Q Consensus       169 i~r~~~~~~~~~~~~k~~Lie~i~~f~e~~~~a~~~Ia~~a~~~I~dg~~ILT~~~S~~V~~~L~~A~~~gk~f~ViV~E  248 (396)
                      +.+....+..||+++|++++++++.|+++...++.+|++.+.+||.||++|||||+|+.|+++|+.|++++++|+|+|+|
T Consensus        84 vtr~slld~~Df~~ck~~l~erg~~F~~~~~~sR~~IA~l~~~Fi~dg~~ILtHg~SRvVl~~L~~Aa~~~~~F~V~vTE  163 (313)
T KOG1466|consen   84 VTRASLLDYEDFEQCKQHLLERGELFIERARKSRQKIAMLAQDFITDGCTILTHGYSRVVLEVLLTAAQNKKRFRVYVTE  163 (313)
T ss_pred             HHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhCCCEEEEcchhHHHHHHHHHHHhcCceEEEEEec
Confidence            99984447889999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCchhHHHHHHHHhCCCCEEEEcchHHHHhcccCCEEEEcceeEeecCCeeccccHHHHHHHhhhCCCcEEEeccccc
Q 016064          249 GRPDRSGLRLANELAKLDVPVKLLIDSAVAYTMDEVDMVFVGADGVVESGGIINMMGTYQIALVAHSMNKPVYVAAESYK  328 (396)
Q Consensus       249 srP~~eG~~la~~L~~~GI~vtlI~Dsav~~~m~~vd~VlvGAd~V~~NG~v~nkiGT~~lAl~Ak~~~vPvyV~aes~K  328 (396)
                      |||.++|..|+++|.+.||||+++.|||+||.|.+||+|++|||+|.+|||++|++|||++|++||+.++|||||+|+||
T Consensus       164 srPd~sG~lm~~~L~~~~IPvtlvlDSaVgyvMe~vD~VlVGAEGVvEsGGIIN~iGTyq~~v~Ak~~~kPfYV~AES~K  243 (313)
T KOG1466|consen  164 SRPDGSGKLMAKELKKLGIPVTLVLDSAVGYVMERVDLVLVGAEGVVESGGIINKIGTYQVAVCAKSMNKPFYVVAESHK  243 (313)
T ss_pred             CCCCCchhHHHHHHHhcCCCeEEEehhhHHHHHhhccEEEEccceeeecCceeeecccchhhhhHHhcCCCeEEEeeccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccccCCCCCCCCCcccCCCCCcCCC--CccccccceeccCCCCccEEEeCCCCCCCchHHHHHHhhhC
Q 016064          329 FARLYPLDQKDMGPALRPIDFGVPIPS--KVEVETSARDYTPPQYLTLLFTDLGVLTPSVVSDELIQLYL  396 (396)
Q Consensus       329 f~~~~p~~~~d~~~~~~~~~~~~~~~~--~~~v~np~fD~tPpelIt~iITE~Gv~~Ps~v~~~L~~~Y~  396 (396)
                      |.+.||++|.|++....+++|+.+.++  ++...+|..|||||+|||++|||+|+++||+|+++|+|+|+
T Consensus       244 FvRlfPLnQ~Dlp~~~~p~~f~~~~~~~~~~~~e~p~vDYTpPeyiTlL~TDLGvltPSaVsdELIKlYl  313 (313)
T KOG1466|consen  244 FVRLFPLNQKDLPPALPPFKFSRPVPEREDVEREHPTVDYTPPEYLTLLFTDLGVLTPSAVSDELIKLYL  313 (313)
T ss_pred             eeeeccCcccccccccCCcccCCCCCcHHhhhhcCCCcccChHHHHHHHHhhccccChhhhhHHHHHhhC
Confidence            999999999999998888888776665  88888999999999999999999999999999999999996

>TIGR00511 ribulose_e2b2 ribose-1,5-bisphosphate isomerase, e2b2 family Back     alignment and domain information
>PRK08535 translation initiation factor IF-2B subunit delta; Provisional Back     alignment and domain information
>PRK05720 mtnA methylthioribose-1-phosphate isomerase; Reviewed Back     alignment and domain information
>PRK05772 translation initiation factor IF-2B subunit alpha; Provisional Back     alignment and domain information
>TIGR00512 salvage_mtnA S-methyl-5-thioribose-1-phosphate isomerase Back     alignment and domain information
>COG1184 GCD2 Translation initiation factor 2B subunit, eIF-2B alpha/beta/delta family [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>TIGR00524 eIF-2B_rel eIF-2B alpha/beta/delta-related uncharacterized proteins Back     alignment and domain information
>PRK06036 translation initiation factor IF-2B subunit alpha; Provisional Back     alignment and domain information
>PRK08334 translation initiation factor IF-2B subunit beta; Validated Back     alignment and domain information
>PF01008 IF-2B: Initiation factor 2 subunit family; InterPro: IPR000649 Initiation factor 2 binds to Met-tRNA, GTP and the small ribosomal subunit Back     alignment and domain information
>PRK08335 translation initiation factor IF-2B subunit alpha; Validated Back     alignment and domain information
>PRK06371 translation initiation factor IF-2B subunit alpha; Provisional Back     alignment and domain information
>COG0182 Predicted translation initiation factor 2B subunit, eIF-2B alpha/beta/delta family [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG1467 consensus Translation initiation factor 2B, delta subunit (eIF-2Bdelta/GCD2) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG1465 consensus Translation initiation factor 2B, beta subunit (eIF-2Bbeta/GCD7) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG1468 consensus Predicted translation initiation factor related to eIF-2B alpha/beta/delta subunits (CIG2/IDI2) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK06372 translation initiation factor IF-2B subunit delta; Provisional Back     alignment and domain information
>PRK00702 ribose-5-phosphate isomerase A; Provisional Back     alignment and domain information
>PRK10434 srlR DNA-bindng transcriptional repressor SrlR; Provisional Back     alignment and domain information
>TIGR00021 rpiA ribose 5-phosphate isomerase Back     alignment and domain information
>cd01398 RPI_A RPI_A: Ribose 5-phosphate isomerase type A (RPI_A) subfamily; RPI catalyzes the reversible conversion of ribose-5-phosphate to ribulose 5-phosphate, the first step of the non-oxidative branch of the pentose phosphate pathway Back     alignment and domain information
>PF00455 DeoRC: DeoR C terminal sensor domain; InterPro: IPR014036 The deoR-type HTH domain is a DNA-binding, helix-turn-helix (HTH) domain of about 50-60 amino acids present in transcription regulators of the deoR family, involved in sugar catabolism Back     alignment and domain information
>PRK09802 DNA-binding transcriptional regulator AgaR; Provisional Back     alignment and domain information
>PRK13509 transcriptional repressor UlaR; Provisional Back     alignment and domain information
>PRK10906 DNA-binding transcriptional repressor GlpR; Provisional Back     alignment and domain information
>PRK10411 DNA-binding transcriptional activator FucR; Provisional Back     alignment and domain information
>PRK10681 DNA-binding transcriptional repressor DeoR; Provisional Back     alignment and domain information
>COG1349 GlpR Transcriptional regulators of sugar metabolism [Transcription / Carbohydrate transport and metabolism] Back     alignment and domain information
>PLN02384 ribose-5-phosphate isomerase Back     alignment and domain information
>PRK13978 ribose-5-phosphate isomerase A; Provisional Back     alignment and domain information
>COG0120 RpiA Ribose 5-phosphate isomerase [Carbohydrate transport and metabolism] Back     alignment and domain information
>KOG0259 consensus Tyrosine aminotransferase [Amino acid transport and metabolism] Back     alignment and domain information
>COG2057 AtoA Acyl CoA:acetate/3-ketoacid CoA transferase, beta subunit [Lipid metabolism] Back     alignment and domain information
>PRK14101 bifunctional glucokinase/RpiR family transcriptional regulator; Provisional Back     alignment and domain information
>PRK10886 DnaA initiator-associating protein DiaA; Provisional Back     alignment and domain information
>KOG3075 consensus Ribose 5-phosphate isomerase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus Back     alignment and domain information
>PRK11557 putative DNA-binding transcriptional regulator; Provisional Back     alignment and domain information
>TIGR01437 selA_rel uncharacterized pyridoxal phosphate-dependent enzyme Back     alignment and domain information
>PF01073 3Beta_HSD: 3-beta hydroxysteroid dehydrogenase/isomerase family; InterPro: IPR002225 The enzyme 3 beta-hydroxysteroid dehydrogenase/5-ene-4-ene isomerase (3 beta-HSD) catalyses the oxidation and isomerisation of 5-ene-3 beta-hydroxypregnene and 5-ene-hydroxyandrostene steroid precursors into the corresponding 4-ene-ketosteroids necessary for the formation of all classes of steroid hormones Back     alignment and domain information
>PRK11337 DNA-binding transcriptional repressor RpiR; Provisional Back     alignment and domain information
>TIGR03402 FeS_nifS cysteine desulfurase NifS Back     alignment and domain information
>cd01989 STK_N The N-terminal domain of Eukaryotic Serine Threonine kinases Back     alignment and domain information
>PLN02651 cysteine desulfurase Back     alignment and domain information
>cd01424 MGS_CPS_II Methylglyoxal synthase-like domain from type II glutamine-dependent carbamoyl phosphate synthetase (CSP) Back     alignment and domain information
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query396
3ecs_A315 Crystal Structure Of Human Eif2b Alpha Length = 315 2e-58
3vm6_A338 Crystal Structure Of Ribose-1,5-Bisphosphate Isomer 4e-28
3a11_A338 Crystal Structure Of Ribose-1,5-Bisphosphate Isomer 7e-28
3a9c_B326 Crystal Structure Of Ribose-1,5-Bisphosphate Isomer 2e-26
3a9c_E322 Crystal Structure Of Ribose-1,5-Bisphosphate Isomer 2e-26
3a9c_A321 Crystal Structure Of Ribose-1,5-Bisphosphate Isomer 2e-26
3a9c_F323 Crystal Structure Of Ribose-1,5-Bisphosphate Isomer 2e-26
1vb5_A276 Crystal Structure Analysis Of The Pyrococcus Horiko 4e-24
1t5o_A351 Crystal Structure Of The Translation Initiation Fac 5e-17
2yrf_A374 Crystal Structure Of 5-Methylthioribose 1-Phosphate 2e-12
1t9k_A347 X-ray Crystal Structure Of Aif-2b Alpha Subunit-rel 6e-12
2a0u_A383 Crystal Structure Of The Eukaryotic Initiation Fact 3e-07
1w2w_B191 Crystal Structure Of Yeast Ypr118w, A Methylthiorib 2e-05
>pdb|3ECS|A Chain A, Crystal Structure Of Human Eif2b Alpha Length = 315 Back     alignment and structure 
Iteration: 1

 Score =  223 bits (567), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 128/302 (42%), Positives = 182/302 (60%), Gaps = 6/302 (1%)
Query: 99  VIDEFNNWRKQ-PDXXXXXXXXXXXXXXXXNSEAKTMMELEIELKKASDSLKSWDTTSIS 157
           +I+ F +  K+ PD                  + +T+  L   L  A ++L   D+ S++
Sbjct: 6   LIEYFKSQXKEDPDXASAVAAIRTLLEFLKRDKGETIQGLRANLTSAIETLCGVDS-SVA 64
Query: 158 LTAGCDLFMRYVTRTSALEYEDFNSARSRLIERAEKFGEISYKARKIIAMLSQDFIFDGC 217
           +++G +LF+R+++  S LEY D++  +   IER E F      +R  IA L   FI DG 
Sbjct: 65  VSSGGELFLRFISLAS-LEYSDYSKCKKIXIERGELFLRRISLSRNKIADLCHTFIKDGA 123
Query: 218 TILVHGFSRVVMEVLKMAAQNKKLFRVLCTEGRPDRSGLRLANELAKLDVPVKLLIDSAV 277
           TIL H +SRVV+ VL+ A   KK F V  TE +PD SG + A  L  L+VPV +++D+AV
Sbjct: 124 TILTHAYSRVVLRVLEAAVAAKKRFSVYVTESQPDLSGKKXAKALCHLNVPVTVVLDAAV 183
Query: 278 AYTMDEVDMVFVGADGVVESGGIINMMGTYQIALVAHSMNKPVYVAAESYKFARLYPLDQ 337
            Y  ++ D+V VGA+GVVE+GGIIN +GT Q A+ A + NKP YV AES+KF RL+PL+Q
Sbjct: 184 GYIXEKADLVIVGAEGVVENGGIINKIGTNQXAVCAKAQNKPFYVVAESFKFVRLFPLNQ 243
Query: 338 KDMGPALRPIDFGVPIPSK---VEVETSARDYTPPQYLTLLFTDLGVLTPSVVSDELIQL 394
           +D+    +     + +      ++ E    DYT P  +TLLFTDLGVLTPS VSDELI+L
Sbjct: 244 QDVPDKFKYKADTLKVAQTGQDLKEEHPWVDYTAPSLITLLFTDLGVLTPSAVSDELIKL 303
Query: 395 YL 396
           YL
Sbjct: 304 YL 305
>pdb|3VM6|A Chain A, Crystal Structure Of Ribose-1,5-Bisphosphate Isomerase From Thermococcus Kodakarensis Kod1 In Complex With Alpha-D-Ribose-1,5- Bisphosphate Length = 338 Back     alignment and structure
>pdb|3A11|A Chain A, Crystal Structure Of Ribose-1,5-Bisphosphate Isomerase From Thermococcus Kodakaraensis Kod1 Length = 338 Back     alignment and structure
>pdb|1VB5|A Chain A, Crystal Structure Analysis Of The Pyrococcus Horikoshii Ot3 Translation Initiation Factor Eif-2b Length = 276 Back     alignment and structure
>pdb|1T5O|A Chain A, Crystal Structure Of The Translation Initiation Factor Eif-2b, Subunit Delta, From A. Fulgidus Length = 351 Back     alignment and structure
>pdb|2YRF|A Chain A, Crystal Structure Of 5-Methylthioribose 1-Phosphate Isomerase From Bacillus Subtilis Complexed With Sulfate Ion Length = 374 Back     alignment and structure
>pdb|1T9K|A Chain A, X-ray Crystal Structure Of Aif-2b Alpha Subunit-related Translation Initiation Factor [thermotoga Maritima] Length = 347 Back     alignment and structure
>pdb|2A0U|A Chain A, Crystal Structure Of The Eukaryotic Initiation Factor 2b From Leishmania Major At 2.1 A Resolution Length = 383 Back     alignment and structure
>pdb|1W2W|B Chain B, Crystal Structure Of Yeast Ypr118w, A Methylthioribose-1- Phosphate Isomerase Related To Regulatory Eif2b Subunits Length = 191 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query396
3ecs_A315 Translation initiation factor EIF-2B subunit alpha 1e-119
1vb5_A276 Translation initiation factor EIF-2B; 2.20A {Pyroc 1e-65
3a11_A338 Translation initiation factor EIF-2B, delta subun; 3e-44
1t5o_A351 EIF2BD, translation initiation factor EIF2B, subun 3e-29
2yvk_A374 Methylthioribose-1-phosphate isomerase; methionine 5e-29
1t9k_A347 Probable methylthioribose-1-phosphate isomerase; s 7e-28
2a0u_A383 Initiation factor 2B; SGPP, structural genomics, P 2e-21
1w2w_B191 5-methylthioribose-1-phosphate isomerase; EIF2B, m 5e-19
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-09
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-06
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-06
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 8e-04
>3ecs_A Translation initiation factor EIF-2B subunit alpha; eukaryotic translation initiation factor 2balpha (EIF2balpha); 2.65A {Homo sapiens} Length = 315 Back     alignment and structure
 Score =  348 bits (895), Expect = e-119
 Identities = 135/304 (44%), Positives = 196/304 (64%), Gaps = 6/304 (1%)

Query: 97  FSVIDEFNN-WRKQPDLAEAVAAIRALAAVIRNSEAKTMMELEIELKKASDSLKSWDTTS 155
             +I+ F +  ++ PD+A AVAAIR L   ++  + +T+  L   L  A ++L   D+ S
Sbjct: 4   KELIEYFKSQMKEDPDMASAVAAIRTLLEFLKRDKGETIQGLRANLTSAIETLCGVDS-S 62

Query: 156 ISLTAGCDLFMRYVTRTSALEYEDFNSARSRLIERAEKFGEISYKARKIIAMLSQDFIFD 215
           +++++G +LF+R+++  S LEY D++  +  +IER E F      +R  IA L   FI D
Sbjct: 63  VAVSSGGELFLRFISLAS-LEYSDYSKCKKIMIERGELFLRRISLSRNKIADLCHTFIKD 121

Query: 216 GCTILVHGFSRVVMEVLKMAAQNKKLFRVLCTEGRPDRSGLRLANELAKLDVPVKLLIDS 275
           G TIL H +SRVV+ VL+ A   KK F V  TE +PD SG ++A  L  L+VPV +++D+
Sbjct: 122 GATILTHAYSRVVLRVLEAAVAAKKRFSVYVTESQPDLSGKKMAKALCHLNVPVTVVLDA 181

Query: 276 AVAYTMDEVDMVFVGADGVVESGGIINMMGTYQIALVAHSMNKPVYVAAESYKFARLYPL 335
           AV Y M++ D+V VGA+GVVE+GGIIN +GT Q+A+ A + NKP YV AES+KF RL+PL
Sbjct: 182 AVGYIMEKADLVIVGAEGVVENGGIINKIGTNQMAVCAKAQNKPFYVVAESFKFVRLFPL 241

Query: 336 DQKDMGPALRPIDFGVPI---PSKVEVETSARDYTPPQYLTLLFTDLGVLTPSVVSDELI 392
           +Q+D+    +     + +      ++ E    DYT P  +TLLFTDLGVLTPS VSDELI
Sbjct: 242 NQQDVPDKFKYKADTLKVAQTGQDLKEEHPWVDYTAPSLITLLFTDLGVLTPSAVSDELI 301

Query: 393 QLYL 396
           +LYL
Sbjct: 302 KLYL 305
>1vb5_A Translation initiation factor EIF-2B; 2.20A {Pyrococcus horikoshii} SCOP: c.124.1.5 Length = 276 Back     alignment and structure
>3a11_A Translation initiation factor EIF-2B, delta subun; isomerase, hexamer, rossmann fold; 2.50A {Thermococcus kodakaraensis} PDB: 3a9c_A* 3vm6_A* Length = 338 Back     alignment and structure
>1t5o_A EIF2BD, translation initiation factor EIF2B, subunit DELT; subunit delta, structural GEN PSI, protein structure initiative; 1.90A {Archaeoglobus fulgidus} SCOP: c.124.1.5 Length = 351 Back     alignment and structure
>2yvk_A Methylthioribose-1-phosphate isomerase; methionine salvage pathway,; HET: MRU; 2.40A {Bacillus subtilis} PDB: 2yrf_A* Length = 374 Back     alignment and structure
>1t9k_A Probable methylthioribose-1-phosphate isomerase; structural genomics, translation initiation factor, AIF-2B subunit, PSI; 2.60A {Thermotoga maritima} SCOP: c.124.1.5 Length = 347 Back     alignment and structure
>2a0u_A Initiation factor 2B; SGPP, structural genomics, PSI, protein structure initiative eukaryotic initiation factor; 2.10A {Leishmania major} SCOP: c.124.1.5 Length = 383 Back     alignment and structure
>1w2w_B 5-methylthioribose-1-phosphate isomerase; EIF2B, methionine salvage pathway, translation initiation, oxidoreductase; 1.75A {Saccharomyces cerevisiae} SCOP: c.124.1.5 Length = 191 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query396
3ecs_A315 Translation initiation factor EIF-2B subunit alpha 100.0
3a11_A338 Translation initiation factor EIF-2B, delta subun; 100.0
2yvk_A374 Methylthioribose-1-phosphate isomerase; methionine 100.0
1t5o_A351 EIF2BD, translation initiation factor EIF2B, subun 100.0
1t9k_A347 Probable methylthioribose-1-phosphate isomerase; s 100.0
2a0u_A383 Initiation factor 2B; SGPP, structural genomics, P 100.0
1vb5_A276 Translation initiation factor EIF-2B; 2.20A {Pyroc 100.0
1w2w_B191 5-methylthioribose-1-phosphate isomerase; EIF2B, m 100.0
1w2w_A211 5-methylthioribose-1-phosphate isomerase; EIF2B, m 99.86
1uj6_A227 Ribose 5-phosphate isomerase; enzyme-inhibitor com 98.31
2f8m_A244 Ribose 5-phosphate isomerase; structural genomics, 98.09
1lk5_A229 D-ribose-5-phosphate isomerase; alpha/beta structu 98.06
1m0s_A219 Ribose-5-phosphate isomerase A; D-ribose 5-phospha 98.06
3kwm_A224 Ribose-5-phosphate isomerase A; structural genomic 98.0
3hhe_A255 Ribose-5-phosphate isomerase A; niaid, ssgcid, dec 97.82
3l7o_A225 Ribose-5-phosphate isomerase A; RPIA; 1.70A {Strep 97.75
1xtz_A264 Ribose-5-phosphate isomerase; yeast; 2.10A {Saccha 97.75
1o8b_A219 Ribose 5-phosphate isomerase; RPIA, PSI, protein S 97.73
2pjm_A226 Ribose-5-phosphate isomerase A; 3D-structure, stru 97.62
3uw1_A239 Ribose-5-phosphate isomerase A; ssgcid, seattle st 97.28
4gmk_A228 Ribose-5-phosphate isomerase A; D-ribose-5-phospha 94.53
3ixq_A226 Ribose-5-phosphate isomerase A; structural genomic 89.42
3mad_A 514 Sphingosine-1-phosphate lyase; carboxy-lyase activ 88.22
3rrl_A235 Succinyl-COA:3-ketoacid-coenzyme A transferase SU; 85.73
3hgm_A147 Universal stress protein TEAD; rossman fold, signa 85.54
3i6i_A 346 Putative leucoanthocyanidin reductase 1; rossmann 85.5
3s3t_A146 Nucleotide-binding protein, universal stress PROT 84.87
3dqp_A219 Oxidoreductase YLBE; alpha-beta protein., structur 84.15
3dlo_A155 Universal stress protein; unknown function, struct 83.34
3ic5_A118 Putative saccharopine dehydrogenase; structural ge 83.1
3e8x_A236 Putative NAD-dependent epimerase/dehydratase; stru 82.93
4gx0_A565 TRKA domain protein; membrane protein, ION channel 82.82
1poi_B260 Glutaconate coenzyme A-transferase; COA, glutamate 81.71
>3ecs_A Translation initiation factor EIF-2B subunit alpha; eukaryotic translation initiation factor 2balpha (EIF2balpha); 2.65A {Homo sapiens} Back     alignment and structure
Probab=100.00  E-value=8.2e-74  Score=564.08  Aligned_cols=300  Identities=45%  Similarity=0.712  Sum_probs=264.1

Q ss_pred             chhhHHHHHHHHh-cCCChHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHhhc
Q 016064           95 RAFSVIDEFNNWR-KQPDLAEAVAAIRALAAVIRNSEAKTMMELEIELKKASDSLKSWDTTSISLTAGCDLFMRYVTRTS  173 (396)
Q Consensus        95 ~~~~vI~~~~~~l-~~~~ia~~IAAi~aL~~vI~~~~~~t~~eL~~~L~~~~~~L~~aRPt~v~L~na~~~f~r~i~r~~  173 (396)
                      .+|++++.|++++ .+|++++++||+++|.++++.++++|.+||.+.|+.+++.|.++|| +++|.||+++|+|++.+..
T Consensus         2 ~~~div~~f~~~l~~d~~~s~aiAAi~aL~~~l~~s~~~T~~el~~~l~~a~~~L~~~r~-avsl~~a~~~~~~~i~~~~   80 (315)
T 3ecs_A            2 DDKELIEYFKSQMKEDPDMASAVAAIRTLLEFLKRDKGETIQGLRANLTSAIETLCGVDS-SVAVSSGGELFLRFISLAS   80 (315)
T ss_dssp             CHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHTCCC----CHHHHHHHHHHHTTTTTSC-CHHHHHHHHHHHHHCC---
T ss_pred             chhhHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhCCC-CccHHHHHHHHHHHHHHhh
Confidence            4699999999998 8999999999999999999999999999999999999999999996 8899999999999986432


Q ss_pred             ccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCceEEeecChHHHHHHHHHHHHCCCeeEEEEeCCCCCc
Q 016064          174 ALEYEDFNSARSRLIERAEKFGEISYKARKIIAMLSQDFIFDGCTILVHGFSRVVMEVLKMAAQNKKLFRVLCTEGRPDR  253 (396)
Q Consensus       174 ~~~~~~~~~~k~~Lie~i~~f~e~~~~a~~~Ia~~a~~~I~dg~~ILT~~~S~~V~~~L~~A~~~gk~f~ViV~EsrP~~  253 (396)
                       .+..+++++|+.|++.++.|.+++..++++|+++|.++|++|++|||||+|++|+++|+.|+++||+|+|||+||||.+
T Consensus        81 -~~~~~~~~~k~~l~~~~~~~~~~~~~a~~~I~~~~~~~I~~g~~ILTh~~S~tv~~~l~~A~~~gk~~~V~v~EsrP~~  159 (315)
T 3ecs_A           81 -LEYSDYSKCKKIMIERGELFLRRISLSRNKIADLCHTFIKDGATILTHAYSRVVLRVLEAAVAAKKRFSVYVTESQPDL  159 (315)
T ss_dssp             ---------CTTHHHHHHHHHHHHHTTHHHHHHHHHGGGCCTTEEEEECSCCHHHHHHHHHHHTTTCCEEEEEECCTTTT
T ss_pred             -cccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEcCCcHHHHHHHHHHHHcCCeEEEEEecCCCcc
Confidence             2445789999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHhCCCCEEEEcchHHHHhcccCCEEEEcceeEeecCCeeccccHHHHHHHhhhCCCcEEEecccccccccc
Q 016064          254 SGLRLANELAKLDVPVKLLIDSAVAYTMDEVDMVFVGADGVVESGGIINMMGTYQIALVAHSMNKPVYVAAESYKFARLY  333 (396)
Q Consensus       254 eG~~la~~L~~~GI~vtlI~Dsav~~~m~~vd~VlvGAd~V~~NG~v~nkiGT~~lAl~Ak~~~vPvyV~aes~Kf~~~~  333 (396)
                      ||.+||++|.+.||||++|+|++++++|++||+||+|||+|++||+++||+|||++|++||+++|||||+||+|||++.+
T Consensus       160 qG~~la~~L~~~gI~vtli~Dsa~~~~m~~vd~VivGAd~i~~nG~v~nkiGT~~iAl~Ak~~~vP~~V~a~~~K~~~~~  239 (315)
T 3ecs_A          160 SGKKMAKALCHLNVPVTVVLDAAVGYIMEKADLVIVGAEGVVENGGIINKIGTNQMAVCAKAQNKPFYVVAESFKFVRLF  239 (315)
T ss_dssp             HHHHHHHHHHTTTCCEEEECGGGHHHHGGGCSEEEEECSEECTTSCEEEETTHHHHHHHHHHTTCCEEEECCGGGBCSCC
T ss_pred             hHHHHHHHHHHcCCCEEEEehhHHHHHHHhCCEEEECceEEecCCCeeehhhhHHHHHHHHHhCCCEEEEeccccccccC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCCCCCCcccCCC---CCcCCCCccccccceeccCCCCccEEEeCCCCCCCchHHHHHHhhhC
Q 016064          334 PLDQKDMGPALRPIDF---GVPIPSKVEVETSARDYTPPQYLTLLFTDLGVLTPSVVSDELIQLYL  396 (396)
Q Consensus       334 p~~~~d~~~~~~~~~~---~~~~~~~~~v~np~fD~tPpelIt~iITE~Gv~~Ps~v~~~L~~~Y~  396 (396)
                      |+++++++.+.+....   ....++++.++||.||+|||+|||+||||.|+++|++|+++|+++|+
T Consensus       240 ~~~~~~i~~e~~~~~ev~~~~~~~~~v~v~NP~fDvTP~~lIt~iITe~Gv~~p~~vs~eLik~~~  305 (315)
T 3ecs_A          240 PLNQQDVPDKFKYKADTLKVAQTGQDLKEEHPWVDYTAPSLITLLFTDLGVLTPSAVSDELIKLYL  305 (315)
T ss_dssp             CSSGGGSCGGGTC-------------CCBCCCSEEEECGGGCSEEEETTEEECGGGHHHHHHHHHT
T ss_pred             CCCcccCCccccChhhccccccCCCcCcCCCCCccCCCHHHcCEEEcCCCCCCcchhhHHHHHHHH
Confidence            9888776533221110   01245689999999999999999999999999999999999999996
>3a11_A Translation initiation factor EIF-2B, delta subun; isomerase, hexamer, rossmann fold; 2.50A {Thermococcus kodakaraensis} PDB: 3a9c_A* 3vm6_A* Back     alignment and structure
>2yvk_A Methylthioribose-1-phosphate isomerase; methionine salvage pathway,; HET: MRU; 2.40A {Bacillus subtilis} PDB: 2yrf_A* Back     alignment and structure
>1t5o_A EIF2BD, translation initiation factor EIF2B, subunit DELT; subunit delta, structural GEN PSI, protein structure initiative; 1.90A {Archaeoglobus fulgidus} SCOP: c.124.1.5 Back     alignment and structure
>1t9k_A Probable methylthioribose-1-phosphate isomerase; structural genomics, translation initiation factor, AIF-2B subunit, PSI; 2.60A {Thermotoga maritima} SCOP: c.124.1.5 Back     alignment and structure
>2a0u_A Initiation factor 2B; SGPP, structural genomics, PSI, protein structure initiative eukaryotic initiation factor; 2.10A {Leishmania major} SCOP: c.124.1.5 Back     alignment and structure
>1vb5_A Translation initiation factor EIF-2B; 2.20A {Pyrococcus horikoshii} SCOP: c.124.1.5 Back     alignment and structure
>1w2w_B 5-methylthioribose-1-phosphate isomerase; EIF2B, methionine salvage pathway, translation initiation, oxidoreductase; 1.75A {Saccharomyces cerevisiae} SCOP: c.124.1.5 Back     alignment and structure
>1w2w_A 5-methylthioribose-1-phosphate isomerase; EIF2B, methionine salvage pathway, translation initiation, oxidoreductase; 1.75A {Saccharomyces cerevisiae} SCOP: c.124.1.5 Back     alignment and structure
>1uj6_A Ribose 5-phosphate isomerase; enzyme-inhibitor complex, riken structural genomics/proteomi initiative, RSGI, structural genomics; HET: A5P; 1.74A {Thermus thermophilus} SCOP: c.124.1.4 d.58.40.1 PDB: 1uj5_A* 1uj4_A* Back     alignment and structure
>2f8m_A Ribose 5-phosphate isomerase; structural genomics, PSI, protein structure initiative, STRU genomics of pathogenic protozoa consortium; 2.09A {Plasmodium falciparum} Back     alignment and structure
>1lk5_A D-ribose-5-phosphate isomerase; alpha/beta structure; 1.75A {Pyrococcus horikoshii} SCOP: c.124.1.4 d.58.40.1 PDB: 1lk7_A* Back     alignment and structure
>1m0s_A Ribose-5-phosphate isomerase A; D-ribose 5-phosphate isomerase, northeast structural genomics consortium, IR21, structural genomics, PSI; HET: CIT; 1.90A {Haemophilus influenzae} SCOP: c.124.1.4 d.58.40.1 Back     alignment and structure
>3kwm_A Ribose-5-phosphate isomerase A; structural genomics, IDP02119, center for structu genomics of infectious diseases, csgid; 2.32A {Francisella tularensis subsp} Back     alignment and structure
>3hhe_A Ribose-5-phosphate isomerase A; niaid, ssgcid, decode, SBRI, UW, STRU genomics, seattle structural genomics center for infectious; HET: 5RP; 2.30A {Bartonella henselae} Back     alignment and structure
>3l7o_A Ribose-5-phosphate isomerase A; RPIA; 1.70A {Streptococcus mutans} Back     alignment and structure
>1xtz_A Ribose-5-phosphate isomerase; yeast; 2.10A {Saccharomyces cerevisiae} Back     alignment and structure
>1o8b_A Ribose 5-phosphate isomerase; RPIA, PSI, protein ST initiative, MCSG, midwest center for structural genomics; HET: ABF; 1.25A {Escherichia coli} SCOP: c.124.1.4 d.58.40.1 PDB: 1lkz_A 1ks2_A* 3enq_A 3env_A* 3enw_A* Back     alignment and structure
>3uw1_A Ribose-5-phosphate isomerase A; ssgcid, seattle structural genomics center for infectious DI isomerase, ribose isomerase; HET: R5P; 1.71A {Burkholderia thailandensis} PDB: 3u7j_A* Back     alignment and structure
>4gmk_A Ribose-5-phosphate isomerase A; D-ribose-5-phosphate isomerase family, ribose 5-phosphate isomerisation; 1.72A {Lactobacillus salivarius} Back     alignment and structure
>3ixq_A Ribose-5-phosphate isomerase A; structural genomics, pentose phosphate pathway, carbon fixation, NPPSFA; HET: PGO; 1.78A {Methanocaldococcus jannaschii} Back     alignment and structure
>3mad_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxal phosphate; HET: LLP; 2.00A {Symbiobacterium thermophilum} PDB: 3maf_A* 3mau_A* 3mbb_A* Back     alignment and structure
>3rrl_A Succinyl-COA:3-ketoacid-coenzyme A transferase SU; MCSG,PSI-biology, structural genomics, midwest center for ST genomics; 2.29A {Helicobacter pylori} Back     alignment and structure
>3hgm_A Universal stress protein TEAD; rossman fold, signaling protein; HET: ATP; 1.90A {Halomonas elongata} SCOP: c.26.2.0 Back     alignment and structure
>3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain dehydrogenase reductase, flavonoi oxidoreductase; HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A* Back     alignment and structure
>3s3t_A Nucleotide-binding protein, universal stress PROT family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: ATP; 1.90A {Lactobacillus plantarum} SCOP: c.26.2.0 Back     alignment and structure
>3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.40A {Lactococcus lactis subsp} Back     alignment and structure
>3dlo_A Universal stress protein; unknown function, structural genomics, PSI-2, protein struct initiative, midwest center for structural genomics; HET: MSE; 1.97A {Archaeoglobus fulgidus} PDB: 3qtb_A* Back     alignment and structure
>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi} Back     alignment and structure
>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans} Back     alignment and structure
>4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A* Back     alignment and structure
>1poi_B Glutaconate coenzyme A-transferase; COA, glutamate, protein fermentation; 2.50A {Acidaminococcus fermentans} SCOP: c.124.1.3 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 396
d1vb5a_274 c.124.1.5 (A:) Putative eIF-2B subunit 2-like prot 8e-51
d1t5oa_340 c.124.1.5 (A:) Putative eIF-2B delta-subunit {Arch 6e-38
d1t9ka_340 c.124.1.5 (A:) Probable methylthioribose-1-phospha 7e-36
d2a0ua1374 c.124.1.5 (A:10-383) Initiation factor 2b {Leishma 2e-35
g1w2w.1402 c.124.1.5 (A:,B:) Putative methylthioribose-1-phos 2e-32
>d1vb5a_ c.124.1.5 (A:) Putative eIF-2B subunit 2-like protein PH0440 {Pyrococcus horikoshii [TaxId: 53953]} Length = 274 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: NagB/RpiA/CoA transferase-like
superfamily: NagB/RpiA/CoA transferase-like
family: IF2B-like
domain: Putative eIF-2B subunit 2-like protein PH0440
species: Pyrococcus horikoshii [TaxId: 53953]

 Score =  169 bits (430), Expect = 8e-51
 Identities = 70/273 (25%), Positives = 116/273 (42%), Gaps = 23/273 (8%)

Query: 113 AEAVAAIRALAAVIRNSEAKTMMELEIELKKASDSLKSWDTTSISLTAGCDLFMRYVTRT 172
             A     A   +    +   + +  +EL++    +     +  SL              
Sbjct: 22  WLAKKGAEAFLTLAEELDESLLEDAIMELREEVVKVNP---SMASLYN------------ 66

Query: 173 SALEYEDFNSARSRLIERAEKFGEISYKARKIIAMLSQDFIFDGCTILVHGFSRVVMEVL 232
               +    + R  L  RA +F     +A++ +A +    I DG  I+ H FS  V+E++
Sbjct: 67  -LARFIPVTNRRDILKSRALEFLRRMEEAKRELASIGAQLIDDGDVIITHSFSSTVLEII 125

Query: 233 KMAAQNKKLFRVLCTEGRPDRSGLRLANELAKLDVPVKLLIDSAVAYTMDEVDMVFVGAD 292
           + A + KK F+V+ TE  PD  GL LA EL    +  +++ D+ +     E  +  VGAD
Sbjct: 126 RTAKERKKRFKVILTESSPDYEGLHLARELEFSGIEFEVITDAQMGLFCREASIAIVGAD 185

Query: 293 GVVESGGIINMMGTYQIALVAHSMNKPVYVAAESYKFARLYPLDQKDMGPALRPIDFGVP 352
            + + G ++N  GTY +AL  H    P YVAAE+YKF                 +     
Sbjct: 186 MITKDGYVVNKAGTYLLALACHENAIPFYVAAETYKFHPTLKSGD-------VMLMERDL 238

Query: 353 IPSKVEVETSARDYTPPQYLTLLFTDLGVLTPS 385
           I   V +     D TP +Y+  + T+LG++ P 
Sbjct: 239 IRGNVRIRNVLFDVTPWKYVRGIITELGIVIPP 271
>d1t5oa_ c.124.1.5 (A:) Putative eIF-2B delta-subunit {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 340 Back     information, alignment and structure
>d1t9ka_ c.124.1.5 (A:) Probable methylthioribose-1-phosphate isomerase TM0911 {Thermotoga maritima [TaxId: 2336]} Length = 340 Back     information, alignment and structure
>d2a0ua1 c.124.1.5 (A:10-383) Initiation factor 2b {Leishmania major [TaxId: 5664]} Length = 374 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query396
d1t5oa_340 Putative eIF-2B delta-subunit {Archaeon Archaeoglo 100.0
d1t9ka_340 Probable methylthioribose-1-phosphate isomerase TM 100.0
g1w2w.1402 Putative methylthioribose-1-phosphate isomerase Yp 100.0
d2a0ua1374 Initiation factor 2b {Leishmania major [TaxId: 566 100.0
d1vb5a_274 Putative eIF-2B subunit 2-like protein PH0440 {Pyr 100.0
d1m0sa1147 D-ribose-5-phosphate isomerase (RpiA), catalytic d 97.49
d1lk5a1149 D-ribose-5-phosphate isomerase (RpiA), catalytic d 97.21
d1uj4a1151 D-ribose-5-phosphate isomerase (RpiA), catalytic d 97.17
d1zgza1120 TorCAD operon transcriptional regulator TorD, N-te 85.98
d1a9xa2138 Carbamoyl phosphate synthetase, large subunit allo 85.96
>d1t5oa_ c.124.1.5 (A:) Putative eIF-2B delta-subunit {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: NagB/RpiA/CoA transferase-like
superfamily: NagB/RpiA/CoA transferase-like
family: IF2B-like
domain: Putative eIF-2B delta-subunit
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=100.00  E-value=2.2e-66  Score=514.85  Aligned_cols=307  Identities=29%  Similarity=0.359  Sum_probs=271.8

Q ss_pred             HHhccccCCCCCccccCCCCcchhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHhcCC
Q 016064           74 EAATRAVATGGQEIVDGGKSGRAFSVIDEFNNWRKQPDLAEAVAAIRALAAVIRNSEAKTMMELEIELKKASDSLKSWDT  153 (396)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~~~~vI~~~~~~l~~~~ia~~IAAi~aL~~vI~~~~~~t~~eL~~~L~~~~~~L~~aRP  153 (396)
                      ..+.|..+|+..++....+.++.|++|++|+ +||+|.|+  +++..+|.-.++..+..+..++.+.|++++++|.++||
T Consensus        12 ~ilDQ~~LP~~~~~~~~~~~~~v~~AI~~M~-VRGAPaIg--vaaa~glala~~~~~~~~~~e~~~~L~~a~~~L~~aRP   88 (340)
T d1t5oa_          12 KLIDQTKLPEKLEVIECRNVEELADAIKKLA-VRGAPALE--AAGAYGIALAAREREFADVDELKEHLKKAADFLASTRP   88 (340)
T ss_dssp             EEECGGGTTTCCCEEEECSHHHHHHHHHTTS-SCSHHHHH--HHHHHHHHHHTTSSCCSCHHHHHHHHHHHHHHHHTTCT
T ss_pred             EEEECCCCCCcEEEEEeCCHHHHHHHhHcCc-ccCcHHHH--HHHHHHHHHHHHhhhcCCchhhHHHHHHHHHHHHhcCc
Confidence            3467889999999999999999999999999 99999996  88888888778888889999999999999999999999


Q ss_pred             CchhHHHHHHHHHHHHHhhcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCceEEeecChH-------
Q 016064          154 TSISLTAGCDLFMRYVTRTSALEYEDFNSARSRLIERAEKFGEISYKARKIIAMLSQDFIFDGCTILVHGFSR-------  226 (396)
Q Consensus       154 t~v~L~na~~~f~r~i~r~~~~~~~~~~~~k~~Lie~i~~f~e~~~~a~~~Ia~~a~~~I~dg~~ILT~~~S~-------  226 (396)
                      |++||.|+++++++.+.     +..+.+++|+.+++.++.|.+++..++++|+++|+++|++|++|||||||+       
T Consensus        89 TAVnL~nAl~r~~~~~~-----~~~s~~~~k~~ll~~a~~i~~e~~~a~~~I~~~g~~~I~dg~~ILThcnsg~lat~~~  163 (340)
T d1t5oa_          89 TAVNLFVGIERALNAAL-----KGESVEEVKELALREAEKLAEEDVERNRKMGEYGAELLEDGDVVLTYCNAGRLATVDW  163 (340)
T ss_dssp             TCHHHHHHHHHHHHHHT-----TCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSSSSSS
T ss_pred             cchhHHHHHHHHhhhhh-----cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEecCCchhhhhhh
Confidence            99999999998877653     335689999999999999999999999999999999999999999999997       


Q ss_pred             -HHHHHHHHHHHCCCeeEEEEeCCCCCchhHH-HHHHHHhCCCCEEEEcchHHHHhccc--CCEEEEcceeEeecCCeec
Q 016064          227 -VVMEVLKMAAQNKKLFRVLCTEGRPDRSGLR-LANELAKLDVPVKLLIDSAVAYTMDE--VDMVFVGADGVVESGGIIN  302 (396)
Q Consensus       227 -~V~~~L~~A~~~gk~f~ViV~EsrP~~eG~~-la~~L~~~GI~vtlI~Dsav~~~m~~--vd~VlvGAd~V~~NG~v~n  302 (396)
                       +++++|+.|+++||+|+|||+||||.+||.+ ++++|.+.||+|++|+|++++|+|++  ||+||+|||+|++|| ++|
T Consensus       164 gta~~~i~~a~~~gk~~~V~v~EsrP~~qG~rl~a~~L~~~gi~~t~i~dsa~~~~m~~~~vd~VivGad~v~~nG-~~n  242 (340)
T d1t5oa_         164 GTALGVVRSAVEQGKEIRVIACETRPLNQGSRLTCWELMEDGIDVTLITDSMVGIVMQKGMVDKVIVGADRIVRDA-VFN  242 (340)
T ss_dssp             CSHHHHHHHHHHTTCCCEEEEECCTTTTHHHHTHHHHHHHTTCCEEEECGGGHHHHHHTTCCSEEEECCSEEETTE-EEE
T ss_pred             hhHHHHHHHhhhCCccceEEEEeccCccCchHHHHHHHHhcCCCcEEEechhHHHHhhccccceEeechheeehhc-ccc
Confidence             6899999999999999999999999999965 59999999999999999999999977  999999999999998 899


Q ss_pred             cccHHHHHHHhhhCCCcEEEecccccccccccCCCCCCCCCcc----cCCCC--CcCCCCccccccceeccCCCCccEEE
Q 016064          303 MMGTYQIALVAHSMNKPVYVAAESYKFARLYPLDQKDMGPALR----PIDFG--VPIPSKVEVETSARDYTPPQYLTLLF  376 (396)
Q Consensus       303 kiGT~~lAl~Ak~~~vPvyV~aes~Kf~~~~p~~~~d~~~~~~----~~~~~--~~~~~~~~v~np~fD~tPpelIt~iI  376 (396)
                      |+|||++|++||+|+|||||+||+|||+....  ..|+..+.+    ...++  ...+++++++||.||+|||+|||+||
T Consensus       243 kiGT~~~A~~Ak~~~vP~~V~~~~~k~~~~~~--~~~i~ie~~~~~e~~~~~~~~~~~~~~~v~np~fD~tP~~lI~~ii  320 (340)
T d1t5oa_         243 KIGTYTVSVVAKHHNIPFYVAAPKATFDWERT--AKDVVIEERPREELIFCGKRQIAPLNVKVYNPAFDPTPLENVTALI  320 (340)
T ss_dssp             ETTHHHHHHHHHHTTCCEEEECCGGGBCTTCC--GGGCCCCBCCTHHHHEETTEECSCTTCEECCBSEEEEEGGGCSEEE
T ss_pred             cccHHHHHHHHHHhCCcEEEEeccccccccCC--ccccccccCCHHHhcccCCeeecCCCCCeeCcCccCCCHHHCCEEE
Confidence            99999999999999999999999999986422  222221111    11111  12467899999999999999999999


Q ss_pred             eCCCCCCCch---HHHHH
Q 016064          377 TDLGVLTPSV---VSDEL  391 (396)
Q Consensus       377 TE~Gv~~Ps~---v~~~L  391 (396)
                      ||.|+++|++   |..+|
T Consensus       321 Te~Gi~~P~~~~~~~~~l  338 (340)
T d1t5oa_         321 TEYGVIYPPYEVNVPKVL  338 (340)
T ss_dssp             ETTEEECSCHHHHHHHHT
T ss_pred             CCCCccCCCccccHHHHh
Confidence            9999999964   55544
>d1t9ka_ c.124.1.5 (A:) Probable methylthioribose-1-phosphate isomerase TM0911 {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d2a0ua1 c.124.1.5 (A:10-383) Initiation factor 2b {Leishmania major [TaxId: 5664]} Back     information, alignment and structure
>d1vb5a_ c.124.1.5 (A:) Putative eIF-2B subunit 2-like protein PH0440 {Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure
>d1m0sa1 c.124.1.4 (A:1-126,A:199-219) D-ribose-5-phosphate isomerase (RpiA), catalytic domain {Haemophilus influenzae [TaxId: 727]} Back     information, alignment and structure
>d1lk5a1 c.124.1.4 (A:1-130,A:211-229) D-ribose-5-phosphate isomerase (RpiA), catalytic domain {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure
>d1uj4a1 c.124.1.4 (A:3-131,A:206-227) D-ribose-5-phosphate isomerase (RpiA), catalytic domain {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1zgza1 c.23.1.1 (A:2-121) TorCAD operon transcriptional regulator TorD, N-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1a9xa2 c.24.1.1 (A:936-1073) Carbamoyl phosphate synthetase, large subunit allosteric, C-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure