Citrus Sinensis ID: 016072

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390------

MKYEQIAELLNSIAERFDWEKVMEGDYIIGLKQGKQSISLEPGGQFELSGAPLETLHQTCAEVNSHLYQVKAVAEEMGIGFLGIGFQPKWGLKDIPVMPKGRYEIMRNYMPKVGSLGLDMMFRTCTVQVNLDFSSEADMIRKFRAGLALQPIATALFANSPFTEGKPNGYLSMRSHIWTDTDNNRAGMLPFVFDDSFGFEQYVDYALDVPMYFVYRKKKYIDCAGMSFRDFLAGKLPCLPGELPTLNDWENHLTTIFPEVRLKRYLEMRGADGGPWRRLCALPAFWVGLLYDEDSLQNVLDMTADWTTGERQMLRNKVPKTGLKTPFRDGLLRHVAQDVLKLSKDGLERRGFKETGFLNEVAEVVRTGVTPAEKLLDMYHGKWRESVDPVFEELLY

ccHHHHHHHHHHHHHcccccccccccccccccccccEEEEccccEEEEEccccccHHHHHHHHHHHHHHHHHHHHHcccEEEEcccccccccccccccccHHHHHHHHHHHHHccHHHHHHccccEEEEEEccccHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHccccccccccccccccHHHHHHHHHHHccccEEEEcccEEEEcccccHHHHHHccccccccccccHHHHHHHHccccccccccccEEEcccccccHHHHHHHHHHHHHHHccHHHHHHHHHccccccHHHHHHHHHcccccccccccccccHHHHHHHHHHHcHHHHHHccccHHHHHHHHHHHHHccccHHHHHHHHHcccccccHHHHHHHHcc

ccHHHHHHHHHHHHHHcccccEcccccEEEEEccccEEEEccccEEEEccccHHHHHHHHHHHHHHHHHHHHHHHHHcccEEcccccccccHHHccccccHHHHHHHHHcccccccccHHHHcEEEEEEEcccccHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHcccccccccccccEEEcccccHHHHHHHHHcccEEEEEEcccEEEcccccHHHHHcccccccccccccccHHHHHHHcccHHHHHHHHHHHcccccccHHHHcccHHHHHHHcccHHHHHHHHHHHccccHHHHHHHHHHccHHccccccccccHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHccccHHHHHHHHHcccccccccHHHHHHcc

MKYEQIAELLNSIAERfdwekvmeGDYIIglkqgkqsislepggqfelsgapletLHQTCAEVNSHLYQVKAVAEEMGIgflgigfqpkwglkdipvmpkgRYEIMRNYmpkvgslgLDMMFRTCTVQVNLDFSSEADMIRKFRAGLALQPIATalfanspftegkpngylsmrshiwtdtdnnragmlpfvfddsfgfeqYVDYALDVPMYFVYRKKkyidcagmsFRDFlagklpclpgelptlndwenhlttifpeVRLKRYLEmrgadggpwrrlcaLPAFWVGLLYDEDSLQNVLDMTadwttgerqmlrnkvpktglktpfrdgLLRHVAQDVLKLSKdglerrgfketgfLNEVAEVVRtgvtpaekLLDMyhgkwresvdPVFEELLY

MKYEQIAELLNSIAERFDWEKVMEGDYIIGLKQGKQSISLEPGGQFELSGAPLETLHQTCAEVNSHLYQVKAVAEEMGIGFLgigfqpkwglKDIPVMPKGRYEIMRNYMPKVGSLGLDMMFRTCTVQVNLDFSSEADMIRKFRAGLALQPIATALFANSPFTEGKPNGYLSMRSHIWTDTDNNRAGMLPFVFDDSFGFEQYVDYALDVPMYFVYRKKKYIDCAGMSFRDFLAGKLPCLPGELPTLNDWENHLTTIFPEVRLKRYLEMRgadggpwrRLCALPAFWVGLLYDEDSLQNVLDMTAdwttgerqmlrnkvpktglktpfrdgllRHVAQDVLKlskdglerrgfketgflnevaevvrtgvtpaeklldmyhgkwresvdpVFEELLY

*****IAELLNSIAERFDWEKVMEGDYIIGLKQGKQSISL***GQFELSGAPLETLHQTCAEVNSHLYQVKAVAEEMGIGFLGIGFQPKWGLKDIPVMPKGRYEIMRNYMPKVGSLGLDMMFRTCTVQVNLDFSSEADMIRKFRAGLALQPIATALFANSPFTEGKPNGYLSMRSHIWTDTDNNRAGMLPFVFDDSFGFEQYVDYALDVPMYFVYRKKKYIDCAGMSFRDFLAGKLPCLPGELPTLNDWENHLTTIFPEVRLKRYLEMRGADGGPWRRLCALPAFWVGLLYDEDSLQNVLDMTADWTTGERQMLRNKVPKTGLKTPFRDGLLRHVAQDVLKLSKDGLERRGFKETGFLNEVAEVVRTGVTPAEKLLDMYHGKWRESVDPVF*****

*KYEQIAELLNSIAERFDWEKVMEGDYIIGLKQGKQSISLEPGGQFELSGAPLETLHQTCAEVNSHLYQVKAVAEEMGIGFLGIGFQPKWGLKDIPVMPKGRYEIMRNYMPKVGSLGLDMMFRTCTVQVNLDFSSEADMIRKFRAGLALQPIATALFANSPFTEGKPNGYLSMRSHIWTDTDNNRAGMLPFVFDDSFGFEQYVDYALDVPMYFVYRKKKYIDCAGMSFRDFLAGKLPCLPGELPTLNDWENHLTTIFPEVRLKRYLEMRGADGGPWRRLCALPAFWVGLLYDEDSLQNVLDMTADWTTGERQMLRNKVPKTGLKTPFRDGLLRHVAQDVLKLSKDGLERRGFKETGFLNEVAEVVRTGVTPAEKLLDMYHGKWRESVDPVFEELLY

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		396	2.2.26 [Sep-21-2011]
Q1W2L8		522	Glutamate--cysteine ligas	N/A	no	1.0	0.758	0.926	0.0
O22493		523	Glutamate--cysteine ligas	N/A	no	1.0	0.757	0.914	0.0
P46309		522	Glutamate--cysteine ligas	yes	no	1.0	0.758	0.893	0.0
Q9ZNX6		508	Glutamate--cysteine ligas	N/A	no	1.0	0.779	0.896	0.0
O23736		514	Glutamate--cysteine ligas	N/A	no	1.0	0.770	0.888	0.0
A2YL07		496	Glutamate--cysteine ligas	N/A	no	1.0	0.798	0.833	0.0
Q6Z3A3		496	Glutamate--cysteine ligas	yes	no	1.0	0.798	0.833	0.0
Q8GU95		492	Glutamate--cysteine ligas	N/A	no	1.0	0.804	0.830	0.0
Q688Q9		492	Glutamate--cysteine ligas	yes	no	1.0	0.804	0.828	0.0
O69672		432	Glutamate--cysteine ligas	yes	no	0.75	0.687	0.288	3e-24

>sp\|Q1W2L8\|GSH1_TOBAC Glutamate--cysteine ligase, chloroplastic OS=Nicotiana tabacum GN=GSH1 PE=2 SV=2	Back alignment and function desciption

 Score =  773 bits (1997), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 367/396 (92%), Positives = 381/396 (96%)

Query: 1   MKYEQIAELLNSIAERFDWEKVMEGDYIIGLKQGKQSISLEPGGQFELSGAPLETLHQTC 60
           MKYEQIAELLN IAERFDWEKVMEGD IIGLKQGKQSISLEPGGQFELSGAPLETLHQTC
Sbjct: 127 MKYEQIAELLNGIAERFDWEKVMEGDNIIGLKQGKQSISLEPGGQFELSGAPLETLHQTC 186

Query: 61  AEVNSHLYQVKAVAEEMGIGFLGIGFQPKWGLKDIPVMPKGRYEIMRNYMPKVGSLGLDM 120
           AEVNSHLYQVKAVAEEMGIGFLG GFQPKWGLKDIPVMPKGRYEIMRNYMPKVGSLGLDM
Sbjct: 187 AEVNSHLYQVKAVAEEMGIGFLGTGFQPKWGLKDIPVMPKGRYEIMRNYMPKVGSLGLDM 246

Query: 121 MFRTCTVQVNLDFSSEADMIRKFRAGLALQPIATALFANSPFTEGKPNGYLSMRSHIWTD 180
           MFRTCTVQVNLDFSSEADMIRKFRAGLALQPIATALFANSPFTEGKPNGYLSMRSHIWTD
Sbjct: 247 MFRTCTVQVNLDFSSEADMIRKFRAGLALQPIATALFANSPFTEGKPNGYLSMRSHIWTD 306

Query: 181 TDNNRAGMLPFVFDDSFGFEQYVDYALDVPMYFVYRKKKYIDCAGMSFRDFLAGKLPCLP 240
           TDNNRAGMLPFVFDDSFGFEQYVDYALDVPMYFVYRKKKYIDCAGMSFRDF+ GKL  +P
Sbjct: 307 TDNNRAGMLPFVFDDSFGFEQYVDYALDVPMYFVYRKKKYIDCAGMSFRDFMNGKLSPIP 366

Query: 241 GELPTLNDWENHLTTIFPEVRLKRYLEMRGADGGPWRRLCALPAFWVGLLYDEDSLQNVL 300
           G+ PTLNDWENHLTTIFPEVRLKRYLEMRGADGGPWRRLCALPAFWVG+LYDE SLQ VL
Sbjct: 367 GDYPTLNDWENHLTTIFPEVRLKRYLEMRGADGGPWRRLCALPAFWVGILYDEVSLQTVL 426

Query: 301 DMTADWTTGERQMLRNKVPKTGLKTPFRDGLLRHVAQDVLKLSKDGLERRGFKETGFLNE 360
           DMT+DWT  ER+MLRNKVP +GLKTPFRDGLL+HVAQDV+KL+K+GLERRG+KETGFLNE
Sbjct: 427 DMTSDWTAEEREMLRNKVPTSGLKTPFRDGLLKHVAQDVVKLAKEGLERRGYKETGFLNE 486

Query: 361 VAEVVRTGVTPAEKLLDMYHGKWRESVDPVFEELLY 396
           V EVVRTGVTPAEKLL++YHGKW  SVDPVFEELLY
Sbjct: 487 VTEVVRTGVTPAEKLLELYHGKWGRSVDPVFEELLY 522

Nicotiana tabacum (taxid: 4097)
EC: 6EC: .EC: 3EC: .EC: 2EC: .EC: 2

>sp\|O22493\|GSH1_SOLLC Glutamate--cysteine ligase, chloroplastic OS=Solanum lycopersicum GN=GSH1 PE=2 SV=1	Back alignment and function description

>sp\|P46309\|GSH1_ARATH Glutamate--cysteine ligase, chloroplastic OS=Arabidopsis thaliana GN=GSH1 PE=1 SV=2	Back alignment and function description

>sp\|Q9ZNX6\|GSH1_MEDTR Glutamate--cysteine ligase, chloroplastic OS=Medicago truncatula GN=GSH1 PE=2 SV=1	Back alignment and function description

>sp\|O23736\|GSH1_BRAJU Glutamate--cysteine ligase, chloroplastic OS=Brassica juncea GN=GSH1 PE=1 SV=1	Back alignment and function description

>sp\|A2YL07\|GSH1B_ORYSI Glutamate--cysteine ligase B, chloroplastic OS=Oryza sativa subsp. indica GN=GSH1-2 PE=3 SV=2	Back alignment and function description

>sp\|Q6Z3A3\|GSH1B_ORYSJ Glutamate--cysteine ligase B, chloroplastic OS=Oryza sativa subsp. japonica GN=GSH1-2 PE=3 SV=1	Back alignment and function description

>sp\|Q8GU95\|GSH1A_ORYSI Glutamate--cysteine ligase A, chloroplastic OS=Oryza sativa subsp. indica GN=GSH1-1 PE=2 SV=2	Back alignment and function description

>sp\|Q688Q9\|GSH1A_ORYSJ Glutamate--cysteine ligase A, chloroplastic OS=Oryza sativa subsp. japonica GN=GSH1-1 PE=2 SV=1	Back alignment and function description

>sp\|O69672\|GSHA_MYCTU Glutamate--cysteine ligase GshA OS=Mycobacterium tuberculosis GN=gshA PE=1 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		396
443680320		511	gamma-glutamylcysteine synthetase [Dimoc	1.0	0.774	0.944	0.0
255537467		526	Glutamate--cysteine ligase, chloroplast	1.0	0.752	0.929	0.0
122194121		522	RecName: Full=Glutamate--cysteine ligase	1.0	0.758	0.926	0.0
224074923		526	predicted protein [Populus trichocarpa]	1.0	0.752	0.916	0.0
224053899		526	predicted protein [Populus trichocarpa]	1.0	0.752	0.914	0.0
118489650		526	unknown [Populus trichocarpa x Populus d	1.0	0.752	0.911	0.0
401466660		518	GCS [Cestrum nocturnum]	1.0	0.764	0.921	0.0
34484367		495	gamma-glutamylcysteine synthetase [Lotus	1.0	0.8	0.916	0.0
233142218		523	GSH1 [Solanum lycopersicum]	1.0	0.757	0.916	0.0
350536811		523	glutamate--cysteine ligase, chloroplasti	1.0	0.757	0.914	0.0

>gi\|443680320\|gb\|AFF18844.2\| gamma-glutamylcysteine synthetase [Dimocarpus longan]	Back alignment and taxonomy information

 Score =  787 bits (2033), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 374/396 (94%), Positives = 385/396 (97%)

Query: 1   MKYEQIAELLNSIAERFDWEKVMEGDYIIGLKQGKQSISLEPGGQFELSGAPLETLHQTC 60
           MKYEQIAELLNSIAERFDWEK+ME + IIGLKQGKQSISLEPGGQFELSGAPLETLHQTC
Sbjct: 116 MKYEQIAELLNSIAERFDWEKIMEDNNIIGLKQGKQSISLEPGGQFELSGAPLETLHQTC 175

Query: 61  AEVNSHLYQVKAVAEEMGIGFLGIGFQPKWGLKDIPVMPKGRYEIMRNYMPKVGSLGLDM 120
           AEVNSHLYQVKAVAEEMGIGFLGIGFQPKWG+KDIPVMPKGRYEIM+NYMPKVGSLGLDM
Sbjct: 176 AEVNSHLYQVKAVAEEMGIGFLGIGFQPKWGIKDIPVMPKGRYEIMKNYMPKVGSLGLDM 235

Query: 121 MFRTCTVQVNLDFSSEADMIRKFRAGLALQPIATALFANSPFTEGKPNGYLSMRSHIWTD 180
           MFRTCTVQVNLDFSSEADMIRKFRAGLALQPIATALFANSPFTEGKPNGYLSMRS IWTD
Sbjct: 236 MFRTCTVQVNLDFSSEADMIRKFRAGLALQPIATALFANSPFTEGKPNGYLSMRSQIWTD 295

Query: 181 TDNNRAGMLPFVFDDSFGFEQYVDYALDVPMYFVYRKKKYIDCAGMSFRDFLAGKLPCLP 240
           TDNNR GMLPFVFDDSFGFEQYVDYALDVPMYFVYRKKKYIDC GMSFRDFL GKLPCLP
Sbjct: 296 TDNNRTGMLPFVFDDSFGFEQYVDYALDVPMYFVYRKKKYIDCTGMSFRDFLVGKLPCLP 355

Query: 241 GELPTLNDWENHLTTIFPEVRLKRYLEMRGADGGPWRRLCALPAFWVGLLYDEDSLQNVL 300
           GELPTLNDWENHLTTIFPEVRLKRYLEMRGADGGPWRRLCALPAFWVGLLYDE SLQN L
Sbjct: 356 GELPTLNDWENHLTTIFPEVRLKRYLEMRGADGGPWRRLCALPAFWVGLLYDEVSLQNAL 415

Query: 301 DMTADWTTGERQMLRNKVPKTGLKTPFRDGLLRHVAQDVLKLSKDGLERRGFKETGFLNE 360
           D+TADWT+ ERQMLRNKVPKTGLKTPFRDGLLRHVAQD+LKL+KDGLERRGFKE+GFLN 
Sbjct: 416 DLTADWTSEERQMLRNKVPKTGLKTPFRDGLLRHVAQDILKLAKDGLERRGFKESGFLNA 475

Query: 361 VAEVVRTGVTPAEKLLDMYHGKWRESVDPVFEELLY 396
           VAEVVRTGVTPAEKLL+MYHGKW +SVDPVFEELLY
Sbjct: 476 VAEVVRTGVTPAEKLLEMYHGKWGQSVDPVFEELLY 511

Source: Dimocarpus longan

Species: Dimocarpus longan

Genus: Dimocarpus

Family: Sapindaceae

Order: Sapindales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|255537467\|ref\|XP_002509800.1\| Glutamate--cysteine ligase, chloroplast precursor, putative [Ricinus communis] gi\|223549699\|gb\|EEF51187.1\| Glutamate--cysteine ligase, chloroplast precursor, putative [Ricinus communis]	Back alignment and taxonomy information

>gi\|122194121\|sp\|Q1W2L8.2\|GSH1_TOBAC RecName: Full=Glutamate--cysteine ligase, chloroplastic; AltName: Full=Gamma-ECS; Short=GCS; AltName: Full=Gamma-glutamylcysteine synthetase; Flags: Precursor gi\|111380512\|gb\|ABD98695.2\| chloroplast gamma-glutamylcysteine synthetase [Nicotiana tabacum]	Back alignment and taxonomy information

>gi\|224074923\|ref\|XP_002304493.1\| predicted protein [Populus trichocarpa] gi\|222841925\|gb\|EEE79472.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|224053899\|ref\|XP_002298035.1\| predicted protein [Populus trichocarpa] gi\|222845293\|gb\|EEE82840.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|118489650\|gb\|ABK96626.1\| unknown [Populus trichocarpa x Populus deltoides]	Back alignment and taxonomy information

>gi\|401466660\|gb\|AFP93564.1\| GCS [Cestrum nocturnum]	Back alignment and taxonomy information

>gi\|34484367\|gb\|AAO45821.1\| gamma-glutamylcysteine synthetase [Lotus japonicus] gi\|37681494\|gb\|AAO27827.1\| gamma-glutamylcysteine synthetase [Lotus japonicus]	Back alignment and taxonomy information

>gi\|233142218\|gb\|ACQ91100.1\| GSH1 [Solanum lycopersicum]	Back alignment and taxonomy information

>gi\|350536811\|ref\|NP_001234010.1\| glutamate--cysteine ligase, chloroplastic [Solanum lycopersicum] gi\|3913791\|sp\|O22493.1\|GSH1_SOLLC RecName: Full=Glutamate--cysteine ligase, chloroplastic; AltName: Full=Gamma-ECS; Short=GCS; AltName: Full=Gamma-glutamylcysteine synthetase; Flags: Precursor gi\|2407615\|gb\|AAB71230.1\| gamma-glutamylcysteine synthetase [Solanum lycopersicum]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		396
TAIR\|locus:2127173		522	GSH1 "glutamate-cysteine ligas	1.0	0.758	0.893	4.2e-198
TIGR_CMR\|SPO_3626		456	SPO_3626 "glutamate--cysteine	0.987	0.857	0.536	3.3e-118
UNIPROTKB\|O69672		432	gshA "Glutamate--cysteine liga	0.734	0.673	0.290	3.9e-23
UNIPROTKB\|A0R5N1		423	gshA "Glutamate--cysteine liga	0.661	0.619	0.305	1.2e-21

TAIR\|locus:2127173 GSH1 "glutamate-cysteine ligase" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 1918 (680.2 bits), Expect = 4.2e-198, P = 4.2e-198
 Identities = 354/396 (89%), Positives = 376/396 (94%)

Query:     1 MKYEQIAELLNSIAERFDWEKVMEGDYIIGLKQGKQSISLEPGGQFELSGAPLETLHQTC 60
             MKY+QIAELLN IAERF+WEKVMEGD IIGLKQGKQSISLEPGGQFELSGAPLETLHQTC
Sbjct:   127 MKYDQIAELLNGIAERFEWEKVMEGDKIIGLKQGKQSISLEPGGQFELSGAPLETLHQTC 186

Query:    61 AEVNSHLYQVKAVAEEMGIGFLGIGFQPKWGLKDIPVMPKGRYEIMRNYMPKVGSLGLDM 120
             AEVNSHLYQVKAVAEEMGIGFLGIGFQPKW  +DIP+MPKGRY+IMRNYMPKVG+LGLDM
Sbjct:   187 AEVNSHLYQVKAVAEEMGIGFLGIGFQPKWRREDIPIMPKGRYDIMRNYMPKVGTLGLDM 246

Query:   121 MFRTCTVQVNLDFSSEADMIRKFRAGLALQPIATALFANSPFTEGKPNGYLSMRSHIWTD 180
             M RTCTVQVNLDFSSEADMIRKFRAGLALQPIATALFANSPFTEGKPNG+LSMRSHIWTD
Sbjct:   247 MLRTCTVQVNLDFSSEADMIRKFRAGLALQPIATALFANSPFTEGKPNGFLSMRSHIWTD 306

Query:   181 TDNNRAGMLPFVFDDSFGFEQYVDYALDVPMYFVYRKKKYIDCAGMSFRDFLAGKLPCLP 240
             TD +R GMLPFVFDDSFGFEQYVDYALDVPMYF YRK KYIDC GM+FR FLAGKLPCLP
Sbjct:   307 TDKDRTGMLPFVFDDSFGFEQYVDYALDVPMYFAYRKNKYIDCTGMTFRQFLAGKLPCLP 366

Query:   241 GELPTLNDWENHLTTIFPEVRLKRYLEMRGADGGPWRRLCALPAFWVGLLYDEDSLQNVL 300
             GELP+ NDWENHLTTIFPEVRLKRYLEMRGADGGPWRRLCALPAFWVGLLYD+DSLQ +L
Sbjct:   367 GELPSYNDWENHLTTIFPEVRLKRYLEMRGADGGPWRRLCALPAFWVGLLYDDDSLQAIL 426

Query:   301 DMTADWTTGERQMLRNKVPKTGLKTPFRDGLLRHVAQDVLKLSKDGLERRGFKETGFLNE 360
             D+TADWT  ER+MLRNKVP TGLKTPFRDGLL+HVA+DVLKL+KDGLERRG+KE GFLN 
Sbjct:   427 DLTADWTPAEREMLRNKVPVTGLKTPFRDGLLKHVAEDVLKLAKDGLERRGYKEAGFLNA 486

Query:   361 VAEVVRTGVTPAEKLLDMYHGKWRESVDPVFEELLY 396
             V EVVRTGVTPAEKLL+MY+G+W +SVDPVFEELLY
Sbjct:   487 VDEVVRTGVTPAEKLLEMYNGEWGQSVDPVFEELLY 522

GO:0004357 "glutamate-cysteine ligase activity" evidence=IEA;IMP;IDA

GO:0006750 "glutathione biosynthetic process" evidence=IEA;IMP;IDA;TAS

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009908 "flower development" evidence=IMP

GO:0009408 "response to heat" evidence=IMP

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0009753 "response to jasmonic acid stimulus" evidence=IEP

GO:0010193 "response to ozone" evidence=IEP;RCA

GO:0046686 "response to cadmium ion" evidence=IEP;IMP;RCA

GO:0050832 "defense response to fungus" evidence=IMP

GO:0002213 "defense response to insect" evidence=IMP

GO:0019761 "glucosinolate biosynthetic process" evidence=IMP

GO:0042742 "defense response to bacterium" evidence=IMP

GO:0052544 "defense response by callose deposition in cell wall" evidence=IMP

GO:0006007 "glucose catabolic process" evidence=RCA

GO:0006094 "gluconeogenesis" evidence=RCA

GO:0006096 "glycolysis" evidence=RCA

GO:0009651 "response to salt stress" evidence=RCA

GO:0019344 "cysteine biosynthetic process" evidence=RCA

GO:0030244 "cellulose biosynthetic process" evidence=RCA

GO:0009536 "plastid" evidence=IDA

GO:0009700 "indole phytoalexin biosynthetic process" evidence=IMP

GO:0009816 "defense response to bacterium, incompatible interaction" evidence=IMP

TIGR_CMR\|SPO_3626 SPO_3626 "glutamate--cysteine ligase" [Ruegeria pomeroyi DSS-3 (taxid:246200)]	Back alignment and assigned GO terms

UNIPROTKB\|O69672 gshA "Glutamate--cysteine ligase GshA" [Mycobacterium tuberculosis (taxid:1773)]	Back alignment and assigned GO terms

UNIPROTKB\|A0R5N1 gshA "Glutamate--cysteine ligase GshA" [Mycobacterium smegmatis str. MC2 155 (taxid:246196)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
O22493	GSH1_SOLLC	6, ., 3, ., 2, ., 2	0.9141	1.0	0.7571	N/A	no
P46309	GSH1_ARATH	6, ., 3, ., 2, ., 2	0.8939	1.0	0.7586	yes	no
Q8GU95	GSH1A_ORYSI	6, ., 3, ., 2, ., 2	0.8308	1.0	0.8048	N/A	no
Q688Q9	GSH1A_ORYSJ	6, ., 3, ., 2, ., 2	0.8282	1.0	0.8048	yes	no
Q1W2L8	GSH1_TOBAC	6, ., 3, ., 2, ., 2	0.9267	1.0	0.7586	N/A	no
A2YL07	GSH1B_ORYSI	6, ., 3, ., 2, ., 2	0.8333	1.0	0.7983	N/A	no
Q6Z3A3	GSH1B_ORYSJ	6, ., 3, ., 2, ., 2	0.8333	1.0	0.7983	yes	no
O23736	GSH1_BRAJU	6, ., 3, ., 2, ., 2	0.8888	1.0	0.7704	N/A	no
Q9ZNX6	GSH1_MEDTR	6, ., 3, ., 2, ., 2	0.8964	1.0	0.7795	N/A	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	6.3.2.2	0.979
3rd Layer	6.3.2	0.983

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	estExt_fgenesh4_pm.C_LG_III0405	gamma-glutamylcysteine synthetase (EC-6.3.2.2) (527 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	fgenesh4_pg.C_LG_IV000654	5-oxoprolinase (EC-3.5.2.9) (1269 aa)	•	•	0.930
	gw1.I.2970.1	hypothetical protein (547 aa)	•	•	0.913
	gw1.145.154.1	hypothetical protein (564 aa)	•	•	0.912
	fgenesh4_pg.C_LG_V000227	hypothetical protein (624 aa)	•	•	0.908
	eugene3.00010884	hypothetical protein (918 aa)	•		0.905
	estExt_fgenesh4_pm.C_LG_III0416	SubName- Full=Putative uncharacterized protein; (950 aa)	•		0.903
	gw1.XVIII.3218.1	hypothetical protein (526 aa)	•		0.899
	gw1.746.6.1	annotation not avaliable (450 aa)	•		0.899
	fgenesh4_pg.C_LG_VI001232	hypothetical protein (478 aa)	•		0.899
	estExt_fgenesh4_pg.C_7460003	hypothetical protein (252 aa)	•		0.899

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		396
PLN02611		482	PLN02611, PLN02611, glutamate--cysteine ligase	0.0
TIGR01436		446	TIGR01436, glu_cys_lig_pln, glutamate--cysteine li	0.0
COG3572		456	COG3572, GshA, Gamma-glutamylcysteine synthetase [	0.0
pfam04107		289	pfam04107, GCS2, Glutamate-cysteine ligase family	1e-98
TIGR03444		390	TIGR03444, EgtA_Cys_ligase, ergothioneine biosynth	1e-36
PRK13517		373	PRK13517, PRK13517, carboxylate-amine ligase; Prov	9e-08
TIGR02050		287	TIGR02050, gshA_cyan_rel, carboxylate-amine ligase	2e-07
COG2170		369	COG2170, COG2170, Uncharacterized conserved protei	1e-05
PRK13515		371	PRK13515, PRK13515, carboxylate-amine ligase; Prov	0.002

>gnl\|CDD\|178221 PLN02611, PLN02611, glutamate--cysteine ligase	Back alignment and domain information

 Score =  874 bits (2261), Expect = 0.0
 Identities = 341/396 (86%), Positives = 366/396 (92%)

Query: 1   MKYEQIAELLNSIAERFDWEKVMEGDYIIGLKQGKQSISLEPGGQFELSGAPLETLHQTC 60
           MKY+QIA+LL  +AERF WEK+MEGD IIGLKQ  QS+SLEPGGQFELSGAPLETLHQTC
Sbjct: 87  MKYDQIAQLLEGLAERFGWEKIMEGDNIIGLKQDGQSVSLEPGGQFELSGAPLETLHQTC 146

Query: 61  AEVNSHLYQVKAVAEEMGIGFLGIGFQPKWGLKDIPVMPKGRYEIMRNYMPKVGSLGLDM 120
           AEVNSHLYQVKAVAEEMGIGFLGIGFQPKW + DIP+MPKGRY+IMRNYMPKVGSLGLDM
Sbjct: 147 AEVNSHLYQVKAVAEEMGIGFLGIGFQPKWSVADIPIMPKGRYKIMRNYMPKVGSLGLDM 206

Query: 121 MFRTCTVQVNLDFSSEADMIRKFRAGLALQPIATALFANSPFTEGKPNGYLSMRSHIWTD 180
           MFRTCTVQVNLDFSSE DM+RKFR GLALQPIATALFANSPFTEGKPNGYLS RSHIWTD
Sbjct: 207 MFRTCTVQVNLDFSSEQDMVRKFRVGLALQPIATALFANSPFTEGKPNGYLSYRSHIWTD 266

Query: 181 TDNNRAGMLPFVFDDSFGFEQYVDYALDVPMYFVYRKKKYIDCAGMSFRDFLAGKLPCLP 240
           TD +R GMLPFVFDD FGFE+YVDYALDVPMYFVYR  KYIDC GMSFRDF+AGKLP LP
Sbjct: 267 TDKDRTGMLPFVFDDDFGFERYVDYALDVPMYFVYRNGKYIDCTGMSFRDFMAGKLPQLP 326

Query: 241 GELPTLNDWENHLTTIFPEVRLKRYLEMRGADGGPWRRLCALPAFWVGLLYDEDSLQNVL 300
           GELPTLNDWENHLTTIFPEVRLKRYLEMRGADGGPWRRLCALPAFWVGLLYDE+SLQ+ L
Sbjct: 327 GELPTLNDWENHLTTIFPEVRLKRYLEMRGADGGPWRRLCALPAFWVGLLYDEESLQSAL 386

Query: 301 DMTADWTTGERQMLRNKVPKTGLKTPFRDGLLRHVAQDVLKLSKDGLERRGFKETGFLNE 360
           DM ADWT  ER+MLRNKVPKTGLKTPFRDG L+ VA++VLKL+KDGLERRG+ E GFLN 
Sbjct: 387 DMIADWTPEEREMLRNKVPKTGLKTPFRDGTLKDVAEEVLKLAKDGLERRGYNEEGFLNA 446

Query: 361 VAEVVRTGVTPAEKLLDMYHGKWRESVDPVFEELLY 396
           +AE+VRTGVTPAE+LL++Y GKW  SVDPVFEELLY
Sbjct: 447 LAEIVRTGVTPAERLLELYEGKWGRSVDPVFEELLY 482

Length = 482

>gnl\|CDD\|130503 TIGR01436, glu_cys_lig_pln, glutamate--cysteine ligase, plant type	Back alignment and domain information

>gnl\|CDD\|226102 COG3572, GshA, Gamma-glutamylcysteine synthetase [Coenzyme metabolism]	Back alignment and domain information

>gnl\|CDD\|217898 pfam04107, GCS2, Glutamate-cysteine ligase family 2(GCS2)	Back alignment and domain information

>gnl\|CDD\|234213 TIGR03444, EgtA_Cys_ligase, ergothioneine biosynthesis glutamate--cysteine ligase EgtA	Back alignment and domain information

>gnl\|CDD\|237408 PRK13517, PRK13517, carboxylate-amine ligase; Provisional	Back alignment and domain information

>gnl\|CDD\|233699 TIGR02050, gshA_cyan_rel, carboxylate-amine ligase, YbdK family	Back alignment and domain information

>gnl\|CDD\|225081 COG2170, COG2170, Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>gnl\|CDD\|237406 PRK13515, PRK13515, carboxylate-amine ligase; Provisional	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		396
PLN02611		482	glutamate--cysteine ligase	100.0
TIGR01436		446	glu_cys_lig_pln glutamate--cysteine ligase, plant	100.0
COG3572		456	GshA Gamma-glutamylcysteine synthetase [Coenzyme m	100.0
TIGR03444		390	gshA_related glutamate--cysteine ligase family pro	100.0
PRK13516		373	gamma-glutamyl:cysteine ligase; Provisional	100.0
PRK13518		357	carboxylate-amine ligase; Provisional	100.0
PRK13517		373	carboxylate-amine ligase; Provisional	100.0
PRK13515		371	carboxylate-amine ligase; Provisional	100.0
TIGR02048		376	gshA_cyano glutamate--cysteine ligase, cyanobacter	100.0
COG2170		369	Uncharacterized conserved protein [Function unknow	100.0
TIGR02050		287	gshA_cyan_rel uncharacterized enzyme. This family	100.0
PF04107		288	GCS2: Glutamate-cysteine ligase family 2(GCS2); In	100.0
PRK02471		752	bifunctional glutamate--cysteine ligase/glutathion	99.95
PRK02107		523	glutamate--cysteine ligase; Provisional	98.85
TIGR01434		512	glu_cys_ligase glutamate--cysteine ligase. serve t	98.79
PF03074		371	GCS: Glutamate-cysteine ligase; InterPro: IPR00430	98.59
COG2918		518	GshA Gamma-glutamylcysteine synthetase [Coenzyme m	98.41
PF04262		377	Glu_cys_ligase: Glutamate-cysteine ligase ; InterP	98.36
TIGR01435		737	glu_cys_lig_rel glutamate--cysteine ligase/gamma-g	98.25
KOG3754		640	consensus Gamma-glutamylcysteine synthetase [Coenz	97.79
PLN02284		354	glutamine synthetase	95.17
PF12224		252	Amidoligase_2: Putative amidoligase enzyme; InterP	94.89
PLN03036		432	glutamine synthetase; Provisional	94.7
TIGR03105		435	gln_synth_III glutamine synthetase, type III. This	94.36
TIGR00653		460	GlnA glutamine synthetase, type I. Alternate name:	92.9
PRK09469		469	glnA glutamine synthetase; Provisional	92.41
COG0174		443	GlnA Glutamine synthetase [Amino acid transport an	90.96
PF00120		259	Gln-synt_C: Glutamine synthetase, catalytic domain	90.25
PF04107		288	GCS2: Glutamate-cysteine ligase family 2(GCS2); In	86.98

>PLN02611 glutamate--cysteine ligase	Back alignment and domain information

Probab=100.00  E-value=2.2e-94  Score=724.36  Aligned_cols=396  Identities=86%  Similarity=1.445  Sum_probs=386.3

Q ss_pred             CChHHHHHHHHHhHhccCCcccccCCceeeecCCCcceeeccCceEEeecCcccCHHHHHHHHHHHHHHHHHHHHHcCCe
Q 016072            1 MKYEQIAELLNSIAERFDWEKVMEGDYIIGLKQGKQSISLEPGGQFELSGAPLETLHQTCAEVNSHLYQVKAVAEEMGIG   80 (396)
Q Consensus         1 ~~~~~v~~~l~~l~~~~~~~~~~~~g~li~~~~~~~~i~~Ep~~qiE~~t~p~~~~~~l~~~l~~~l~~l~~~a~~~g~~   80 (396)
                      ++|++|++||+.|.++|||++++|+|++||+.++|.+||+|||||||+|++||+++.++++++.+.+.+++++++++|+.
T Consensus        87 v~y~~i~~lL~~l~~~~gw~~~~e~g~iIgl~~~g~~ITlEPGgQiElSt~p~~si~e~~~el~~~~~~l~~~a~~~Gl~  166 (482)
T PLN02611         87 MKYDQIAQLLEGLAERFGWEKIMEGDNIIGLKQDGQSVSLEPGGQFELSGAPLETLHQTCAEVNSHLYQVKAVAEEMGIG  166 (482)
T ss_pred             CCHHHHHHHHHHHHHhcCCceeccCCceecccCCCCceEecccceEEecccCcCCHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence            47999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEeccCCCCCCCCCCCCCCcHHHHHHHHhccccccchhhhhcccceeEeeeCCCChHHHHHHHHHHhhhHHHHHHHhhCC
Q 016072           81 FLGIGFQPKWGLKDIPVMPKGRYEIMRNYMPKVGSLGLDMMFRTCTVQVNLDFSSEADMIRKFRAGLALQPIATALFANS  160 (396)
Q Consensus        81 l~~~G~~P~~~~~~~~~~p~~RY~~m~~~~~~~g~~g~~~~~~~~s~qVhv~~~~~~~~~~~~n~~~~~~P~l~ALsaNS  160 (396)
                      +++.|+||++++.+++++||+||+.|.++|++.|..|++||+.|||+|||||+++++++++++|.+++|+|+++||||||
T Consensus       167 l~g~G~hP~~~~~~~~i~pk~RY~~M~~y~~~~g~~g~~MM~~t~g~QVhvd~~seed~v~~~~~~~~l~Pvl~ALfANS  246 (482)
T PLN02611        167 FLGIGFQPKWSVADIPIMPKGRYKIMRNYMPKVGSLGLDMMFRTCTVQVNLDFSSEQDMVRKFRVGLALQPIATALFANS  246 (482)
T ss_pred             eEccCCCCCCccccccCCCChHHHHHHHHHHHhhhhhhhhccceEEEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            99999999999999999999999999999998888899999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCCccchHHHHhcCCCCCCCCCCCCCCCchhHHHHHHHHhcCcceeeeecCccccCCCCcHHHHhhCCCCCCC
Q 016072          161 PFTEGKPNGYLSMRSHIWTDTDNNRAGMLPFVFDDSFGFEQYVDYALDVPMYFVYRKKKYIDCAGMSFRDFLAGKLPCLP  240 (396)
Q Consensus       161 P~~~G~~tg~~s~R~~iw~~~~~~r~g~~p~~f~~~~~~~~y~~~l~~~p~~~~~~~g~~i~~~~~~~~d~~~~~~~~~~  240 (396)
                      |||+|++|||.|+|+.+|+++|++|||++|+.|+++++|++|+++++++||||+.++|.+++..+.+|.|||+++++.++
T Consensus       247 Pf~eG~~tG~~S~R~~iW~~~D~~rtg~~P~~F~d~~~fe~yv~~~Ld~Pm~fv~r~g~~~~~~g~tFrd~~~g~~~~~~  326 (482)
T PLN02611        247 PFTEGKPNGYLSYRSHIWTDTDKDRTGMLPFVFDDDFGFERYVDYALDVPMYFVYRNGKYIDCTGMSFRDFMAGKLPQLP  326 (482)
T ss_pred             ccccCcCCCCcchHHHHHHhcCCCCCCCCCCcCCChhHHHHHHHHHHCCCeEEEEeCCceecCCCCCHHHHHcCcCccCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999877788


Q ss_pred             CCCCChhhhhhhhcCCCCccccccceeeccCCCCchhhhchHHHHHHHhhcChhhhhhhhhcCCCccHHHHHHHhhhhhh
Q 016072          241 GELPTLNDWENHLTTIFPEVRLKRYLEMRGADGGPWRRLCALPAFWVGLLYDEDSLQNVLDMTADWTTGERQMLRNKVPK  320 (396)
Q Consensus       241 g~rp~~~~~~~~lst~~p~vR~~g~IEiR~~D~~p~~~~~a~aAl~~gL~~~~~~~~~~~~~~~~~~~~~~~~~~~~aar  320 (396)
                      |++|+++||++|+||+||+||+|||||||.+|++|++.++|++||++||+|+..+++.+++.+..|..++...+|.++.+
T Consensus       327 ~~~pt~~D~~~HLSt~FP~VRlK~~lE~R~aDa~P~~~~~a~~A~~~GLlyd~~al~~a~~l~~~w~~~~r~~lr~~~~~  406 (482)
T PLN02611        327 GELPTLNDWENHLTTIFPEVRLKRYLEMRGADGGPWRRLCALPAFWVGLLYDEESLQSALDMIADWTPEEREMLRNKVPK  406 (482)
T ss_pred             CCCCCHHHHHHHHhcCCCCccccceEEeccccCCChhhhhhHHHHHHHHhcCHHHHHHHHHHhhcCCHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999989999999999


Q ss_pred             cCCCCccCCccHHHHHHHHHHHHHHhhhhcCCchhchHHHHHHHHHcCCChHHHHHHHHcCccccChHHHHhhhcC
Q 016072          321 TGLKTPFRDGLLRHVAQDVLKLSKDGLERRGFKETGFLNEVAEVVRTGVTPAEKLLDMYHGKWRESVDPVFEELLY  396 (396)
Q Consensus       321 ~Gl~a~~~~~~~~~~~~~Ll~~a~~~L~~~g~~e~~~L~~l~~~l~~g~t~A~~q~~~~~~~~~~vv~~~~~~~~~  396 (396)
                      .||++.+.++++.++++++|++|++||.++|..|..||++|.+++++|+|||+++++.|++.|..-|+.++.|++|
T Consensus       407 ~Gl~~~~~~~~l~~~a~~~l~lA~~gL~~rg~~E~~~L~~l~~~v~~g~tpAd~~l~~~~~~~~~~~~~~~~~~~~  482 (482)
T PLN02611        407 TGLKTPFRDGTLKDVAEEVLKLAKDGLERRGYNEEGFLNALAEIVRTGVTPAERLLELYEGKWGRSVDPVFEELLY  482 (482)
T ss_pred             hhccCccCCccHHHHHHHHHHHHHHHHHhcCCChhhhhHHHHHHHHcCCCHHHHHHHHhcchhcCCchHhhhhhcC
Confidence            9999999899999999999999999999999998899999999999999999999999999999999999999886

>TIGR01436 glu_cys_lig_pln glutamate--cysteine ligase, plant type	Back alignment and domain information

>COG3572 GshA Gamma-glutamylcysteine synthetase [Coenzyme metabolism]	Back alignment and domain information

>TIGR03444 gshA_related glutamate--cysteine ligase family protein	Back alignment and domain information

>PRK13516 gamma-glutamyl:cysteine ligase; Provisional	Back alignment and domain information

>PRK13518 carboxylate-amine ligase; Provisional	Back alignment and domain information

>PRK13517 carboxylate-amine ligase; Provisional	Back alignment and domain information

>PRK13515 carboxylate-amine ligase; Provisional	Back alignment and domain information

>TIGR02048 gshA_cyano glutamate--cysteine ligase, cyanobacterial, putative	Back alignment and domain information

>COG2170 Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>TIGR02050 gshA_cyan_rel uncharacterized enzyme	Back alignment and domain information

>PF04107 GCS2: Glutamate-cysteine ligase family 2(GCS2); InterPro: IPR006336 Also known as gamma-glutamylcysteine synthetase and gamma-ECS (6	Back alignment and domain information

>PRK02471 bifunctional glutamate--cysteine ligase/glutathione synthetase; Provisional	Back alignment and domain information

>PRK02107 glutamate--cysteine ligase; Provisional	Back alignment and domain information

>TIGR01434 glu_cys_ligase glutamate--cysteine ligase	Back alignment and domain information

>PF03074 GCS: Glutamate-cysteine ligase; InterPro: IPR004308 This family represents the catalytic subunit of glutamate-cysteine ligase (6	Back alignment and domain information

>COG2918 GshA Gamma-glutamylcysteine synthetase [Coenzyme metabolism]	Back alignment and domain information

>PF04262 Glu_cys_ligase: Glutamate-cysteine ligase ; InterPro: IPR007370 This is a group of bacterial glutamate-cysteine ligases that carry out the first step of the glutathione biosynthesis pathway according to the following equation: ATP + L-glutamate + L-cysteine = ADP + phosphate + L-glutamyl-L-cysteine (L-aminohexanoate can replace glutamate)	Back alignment and domain information

>TIGR01435 glu_cys_lig_rel glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type	Back alignment and domain information

>KOG3754 consensus Gamma-glutamylcysteine synthetase [Coenzyme transport and metabolism]	Back alignment and domain information

>PLN02284 glutamine synthetase	Back alignment and domain information

>PF12224 Amidoligase_2: Putative amidoligase enzyme; InterPro: IPR022025 This family of proteins are likely to act as amidoligase enzymes [] Protein in this family are found in conserved gene neighbourhoods encoding a glutamine amidotransferase-like thiol peptidase (in proteobacteria) or an Aig2 family cyclotransferase protein (in firmicutes) []	Back alignment and domain information

>PLN03036 glutamine synthetase; Provisional	Back alignment and domain information

>TIGR03105 gln_synth_III glutamine synthetase, type III	Back alignment and domain information

>TIGR00653 GlnA glutamine synthetase, type I	Back alignment and domain information

>PRK09469 glnA glutamine synthetase; Provisional	Back alignment and domain information

>COG0174 GlnA Glutamine synthetase [Amino acid transport and metabolism]	Back alignment and domain information

>PF00120 Gln-synt_C: Glutamine synthetase, catalytic domain; InterPro: IPR008146 Glutamine synthetase (6	Back alignment and domain information

>PF04107 GCS2: Glutamate-cysteine ligase family 2(GCS2); InterPro: IPR006336 Also known as gamma-glutamylcysteine synthetase and gamma-ECS (6	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		396
2gwd_A		449	Crystal Structure Of Plant Glutamate Cysteine Ligas		0.0
2gwc_A		449	Crystal Structure Of Plant Glutamate Cysteine Ligas		0.0

>pdb|2GWD|A Chain A, Crystal Structure Of Plant Glutamate Cysteine Ligase In Complex With Mg2+ And L-glutamate Length = 449

Back alignment and structure

Iteration: 1

Score = 746 bits (1925), Expect = 0.0, Method: Compositional matrix adjust. Identities = 352/396 (88%), Positives = 374/396 (94%) Query: 1 MKYEQIAELLNSIAERFDWEKVMEGDYIIGLKQGKQSISLEPGGQFELSGAPLETLHQTC 60 MKY+QIAELLNSIAERF+WEKVMEGD IIGLKQGKQSISLEPGGQFELSGAPLETLHQTC Sbjct: 54 MKYDQIAELLNSIAERFEWEKVMEGDKIIGLKQGKQSISLEPGGQFELSGAPLETLHQTC 113 Query: 61 AEVNSHLYQVKAVAEEMGIGFLGIGFQPKWGLKDIPVMPKGRYEIMRNYMPKVGSLGLDM 120 AEVNSHLYQVKAVAEEMGIGFLG+GFQPKW +DIP MPKGRY+IMRNYMPKVGSLGLDM Sbjct: 114 AEVNSHLYQVKAVAEEMGIGFLGMGFQPKWRREDIPTMPKGRYDIMRNYMPKVGSLGLDM 173 Query: 121 MFRTCTVQVNLDFSSEADMIRKFRAGLALQPIATALFANSPFTEGKPNGYLSMRSHIWTD 180 M RTCTVQVNLDFSSEADMIRKFRAGLALQPIATALFANSPFTEGKPNG+LSMRSHIWTD Sbjct: 174 MLRTCTVQVNLDFSSEADMIRKFRAGLALQPIATALFANSPFTEGKPNGFLSMRSHIWTD 233 Query: 181 TDNNRAGMLPFVFDDSFGFEQYVDYALDVPMYFVYRKKKYIDCAGMSFRDFLAGKLPCLP 240 TD +R GMLPFVFDDSFGFEQYVDYALDVPMYF YR KY+DC GM+FR FLAGKLPCLP Sbjct: 234 TDKDRTGMLPFVFDDSFGFEQYVDYALDVPMYFAYRNGKYVDCTGMTFRQFLAGKLPCLP 293 Query: 241 GELPTLNDWENHLTTIFPEVRLKRYLEMRGADGGPWRRLCALPAFWVGLLYDEDSLQNVL 300 GELPT NDWENHLTTIFPEVRLKRY+EMRGADGGPWRRLCALPAFWVGLLYDED LQ+VL Sbjct: 294 GELPTYNDWENHLTTIFPEVRLKRYMEMRGADGGPWRRLCALPAFWVGLLYDEDVLQSVL 353 Query: 301 DMTADWTTGERQMLRNKVPKTGLKTPFRDGLLRHVAQDVLKLSKDGLERRGFKETGFLNE 360 D+TADWT ER+MLRNKVP TGLKTPFRDGLL+HVA+DVLKL+KDGLERRG+KE GFLN Sbjct: 354 DLTADWTPAEREMLRNKVPVTGLKTPFRDGLLKHVAEDVLKLAKDGLERRGYKEVGFLNA 413 Query: 361 VAEVVRTGVTPAEKLLDMYHGKWRESVDPVFEELLY 396 V EVVRTGVTPAE LL+MY+G+W +SVDPVF+ELLY Sbjct: 414 VTEVVRTGVTPAENLLEMYNGEWGQSVDPVFQELLY 449

PyMOL of 2gwd

>pdb|2GWC|A Chain A, Crystal Structure Of Plant Glutamate Cysteine Ligase In Complex With A Transition State Analogue Length = 449

Back alignment and structure

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		396
2gwd_A		449	Glutamate cysteine ligase; disulfide bridges, glut	1e-127
1r8g_A		372	Hypothetical protein YBDK; structural genomics, un	1e-39
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-05

>2gwd_A Glutamate cysteine ligase; disulfide bridges, glutathione biosynthesis, beta-hairpin, R regulation; HET: GLU; 2.09A {Brassica juncea} PDB: 2gwc_A* Length = 449	Back alignment and structure

 Score =  374 bits (959), Expect = e-127
 Identities = 352/396 (88%), Positives = 374/396 (94%)

Query: 1   MKYEQIAELLNSIAERFDWEKVMEGDYIIGLKQGKQSISLEPGGQFELSGAPLETLHQTC 60
           MKY+QIAELLNSIAERF+WEKVMEGD IIGLKQGKQSISLEPGGQFELSGAPLETLHQTC
Sbjct: 54  MKYDQIAELLNSIAERFEWEKVMEGDKIIGLKQGKQSISLEPGGQFELSGAPLETLHQTC 113

Query: 61  AEVNSHLYQVKAVAEEMGIGFLGIGFQPKWGLKDIPVMPKGRYEIMRNYMPKVGSLGLDM 120
           AEVNSHLYQVKAVAEEMGIGFLG+GFQPKW  +DIP MPKGRY+IMRNYMPKVGSLGLDM
Sbjct: 114 AEVNSHLYQVKAVAEEMGIGFLGMGFQPKWRREDIPTMPKGRYDIMRNYMPKVGSLGLDM 173

Query: 121 MFRTCTVQVNLDFSSEADMIRKFRAGLALQPIATALFANSPFTEGKPNGYLSMRSHIWTD 180
           M RTCTVQVNLDFSSEADMIRKFRAGLALQPIATALFANSPFTEGKPNG+LSMRSHIWTD
Sbjct: 174 MLRTCTVQVNLDFSSEADMIRKFRAGLALQPIATALFANSPFTEGKPNGFLSMRSHIWTD 233

Query: 181 TDNNRAGMLPFVFDDSFGFEQYVDYALDVPMYFVYRKKKYIDCAGMSFRDFLAGKLPCLP 240
           TD +R GMLPFVFDDSFGFEQYVDYALDVPMYF YR  KY+DC GM+FR FLAGKLPCLP
Sbjct: 234 TDKDRTGMLPFVFDDSFGFEQYVDYALDVPMYFAYRNGKYVDCTGMTFRQFLAGKLPCLP 293

Query: 241 GELPTLNDWENHLTTIFPEVRLKRYLEMRGADGGPWRRLCALPAFWVGLLYDEDSLQNVL 300
           GELPT NDWENHLTTIFPEVRLKRY+EMRGADGGPWRRLCALPAFWVGLLYDED LQ+VL
Sbjct: 294 GELPTYNDWENHLTTIFPEVRLKRYMEMRGADGGPWRRLCALPAFWVGLLYDEDVLQSVL 353

Query: 301 DMTADWTTGERQMLRNKVPKTGLKTPFRDGLLRHVAQDVLKLSKDGLERRGFKETGFLNE 360
           D+TADWT  ER+MLRNKVP TGLKTPFRDGLL+HVA+DVLKL+KDGLERRG+KE GFLN 
Sbjct: 354 DLTADWTPAEREMLRNKVPVTGLKTPFRDGLLKHVAEDVLKLAKDGLERRGYKEVGFLNA 413

Query: 361 VAEVVRTGVTPAEKLLDMYHGKWRESVDPVFEELLY 396
           V EVVRTGVTPAE LL+MY+G+W +SVDPVF+ELLY
Sbjct: 414 VTEVVRTGVTPAENLLEMYNGEWGQSVDPVFQELLY 449

PyMOL of 2gwd

>1r8g_A Hypothetical protein YBDK; structural genomics, unknown function, carboxylate-amine ligase, structure 2 function project, S2F; 2.15A {Escherichia coli} SCOP: d.128.1.3 PDB: 1tt4_A Length = 372	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		396
2gwd_A		449	Glutamate cysteine ligase; disulfide bridges, glut	100.0
1r8g_A		372	Hypothetical protein YBDK; structural genomics, un	100.0
3ln6_A		750	Glutathione biosynthesis bifunctional protein GSH;	99.96
1va6_A		518	Glutamate--cysteine ligase; glutathione homeostasi	99.96
3ln7_A		757	Glutathione biosynthesis bifunctional protein GSH;	99.93
3nzt_A		525	Glutamate--cysteine ligase; structural genomics, c	99.9
3ig5_A		692	Glutamate-cysteine ligase; glutathione, ATP-grAsp,	99.57
3fky_A		370	Glutamine synthetase; beta-grAsp, catalytic domain	93.04
2d3a_A		356	Glutamine synthetase; ligase; HET: P3S ADP; 2.63A	92.95
1f52_A		468	Glutamine synthetase; ADP, MPD, ligase; HET: ADP;	92.02
4hpp_A		443	Probable glutamine synthetase; glutamine synthase	91.1
2ojw_A		384	Glutamine synthetase; amino-acid biosynthesis, lig	89.69
3ng0_A		473	Glutamine synthetase; GSI, nitrogen metabolism, sy	89.65
3qaj_A		444	Glutamine synthetase; AMP-PCP, ACP, ligase; HET: G	89.48
4acf_A		486	Glutamine synthetase 1; ligase, nucleotide-binding	85.37
3o6x_A		729	Glutamine synthetase; type III, beta barrel,dodeca	80.42

>2gwd_A Glutamate cysteine ligase; disulfide bridges, glutathione biosynthesis, beta-hairpin, R regulation; HET: GLU; 2.09A {Brassica juncea} PDB: 2gwc_A*	Back alignment and structure

Probab=100.00  E-value=1.7e-79  Score=623.82  Aligned_cols=395  Identities=89%  Similarity=1.474  Sum_probs=372.5

Q ss_pred             ChHHHHHHHHHhHhccCCcccccCCceeeecCCCcceeeccCceEEeecCcccCHHHHHHHHHHHHHHHHHHHHHcCCeE
Q 016072            2 KYEQIAELLNSIAERFDWEKVMEGDYIIGLKQGKQSISLEPGGQFELSGAPLETLHQTCAEVNSHLYQVKAVAEEMGIGF   81 (396)
Q Consensus         2 ~~~~v~~~l~~l~~~~~~~~~~~~g~li~~~~~~~~i~~Ep~~qiE~~t~p~~~~~~l~~~l~~~l~~l~~~a~~~g~~l   81 (396)
                      .|..+.+||+.+...++|++.+++|++|++.+++..|++||++|||++|+||+++.++++++...+..++++++++|+.|
T Consensus        55 ~~~~~~~lL~~l~~~~g~~~~~~~~~~~~l~~~~~~i~~E~~~qiEl~t~p~~~~~e~~~~l~~~~~~~~~~a~~~g~~l  134 (449)
T 2gwd_A           55 KYDQIAELLNSIAERFEWEKVMEGDKIIGLKQGKQSISLEPGGQFELSGAPLETLHQTCAEVNSHLYQVKAVAEEMGIGF  134 (449)
T ss_dssp             CHHHHHHHHHHHHHHHTCEEEEETTEEEEEEETTEEEEECTTCCEEEECCCBSSHHHHHHHHHHHHHHHHHHHHHHTEEE
T ss_pred             ChHHHHHHHHHHHHhhccCccccccccccccCCCceEEecCCceEEecCCCcCCHHHHHHHHHHHHHHHHHHHHHcCCce
Confidence            35578999999988889999999999999999989999999999999999999999999999999999999999999999


Q ss_pred             EeccCCCCCCCCCCCCCCcHHHHHHHHhccccccchhhhhcccceeEeeeCCCChHHHHHHHHHHhhhHHHHHHHhhCCC
Q 016072           82 LGIGFQPKWGLKDIPVMPKGRYEIMRNYMPKVGSLGLDMMFRTCTVQVNLDFSSEADMIRKFRAGLALQPIATALFANSP  161 (396)
Q Consensus        82 ~~~G~~P~~~~~~~~~~p~~RY~~m~~~~~~~g~~g~~~~~~~~s~qVhv~~~~~~~~~~~~n~~~~~~P~l~ALsaNSP  161 (396)
                      ++.|+||+..+.+++++|++||+.|.+++++.|..|++||.++||+||||++++++++++++|.++++.|+++|||||||
T Consensus       135 ~~~G~~P~~~~~~~~~~~~~RY~~m~~~~~~~g~~g~~mm~~~~g~qVhl~~~~~~~~~~~~~~~~~~~P~llALsAnSP  214 (449)
T 2gwd_A          135 LGMGFQPKWRREDIPTMPKGRYDIMRNYMPKVGSLGLDMMLRTCTVQVNLDFSSEADMIRKFRAGLALQPIATALFANSP  214 (449)
T ss_dssp             ECCSBCSSCCGGGSCCCSCHHHHHHHHHGGGTCSSHHHHHHHBCEEEEEECCSSHHHHHHHHHHHHHHHHHHHHHHCCBC
T ss_pred             eeccCCCCCCccccCCCCchHHHHHHHHHHHhchhHHHHhhcceeeEEEecCCCHHHHHHHHHHHHHHHHHHHHHHhCCc
Confidence            99999999988888999999999999999877888999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCccchHHHHhcCCCCCCCCCCCCCCCchhHHHHHHHHhcCcceeeeecCccccCCCCcHHHHhhCCCCCCCC
Q 016072          162 FTEGKPNGYLSMRSHIWTDTDNNRAGMLPFVFDDSFGFEQYVDYALDVPMYFVYRKKKYIDCAGMSFRDFLAGKLPCLPG  241 (396)
Q Consensus       162 ~~~G~~tg~~s~R~~iw~~~~~~r~g~~p~~f~~~~~~~~y~~~l~~~p~~~~~~~g~~i~~~~~~~~d~~~~~~~~~~g  241 (396)
                      ||+|++|||+|+|+.+|+++|++|+|.+|+.|+|+++|++|+++++++|+||+.++|.+++..+.+|.||+++.++.+.|
T Consensus       215 f~~G~~tg~~S~R~~~w~~~~~~r~G~~p~~f~~~~~~e~yv~~l~~~~~~~v~~~g~~~~~~~~~f~~~l~~~l~~~~~  294 (449)
T 2gwd_A          215 FTEGKPNGFLSMRSHIWTDTDKDRTGMLPFVFDDSFGFEQYVDYALDVPMYFAYRNGKYVDCTGMTFRQFLAGKLPCLPG  294 (449)
T ss_dssp             EETTEECSCSBHHHHHTTSSCGGGCSCCGGGGSTTCSHHHHHHHHHHSCEEEEEETTEEEEEEEECHHHHHTTCCTTSTT
T ss_pred             ccccCcCCCcchHHHHHhhCCCCcCCCCCcccCCccCHHHHHHHHHcCCceEeecCCccccCCcchHHHhhhcccccccC
Confidence            99999999999999999999988999889899999999999999999999999999988888899999999998877888


Q ss_pred             CCCChhhhhhhhcCCCCccccccceeeccCCCCchhhhchHHHHHHHhhcChhhhhhhhhcCCCccHHHHHHHhhhhhhc
Q 016072          242 ELPTLNDWENHLTTIFPEVRLKRYLEMRGADGGPWRRLCALPAFWVGLLYDEDSLQNVLDMTADWTTGERQMLRNKVPKT  321 (396)
Q Consensus       242 ~rp~~~~~~~~lst~~p~vR~~g~IEiR~~D~~p~~~~~a~aAl~~gL~~~~~~~~~~~~~~~~~~~~~~~~~~~~aar~  321 (396)
                      ++|++.||..|+||+||+||||++||+|+||+||+.+++|++||++||+++...++......+.|...+.+.+|.+|+|+
T Consensus       295 ~~p~~~d~~~~~st~~~~vRpk~~iE~R~~D~~p~~~~~a~aAl~~gL~~~~~~~~~~~~~~~~~~~~~~~~~~~~AaR~  374 (449)
T 2gwd_A          295 ELPTYNDWENHLTTIFPEVRLKRYMEMRGADGGPWRRLCALPAFWVGLLYDEDVLQSVLDLTADWTPAEREMLRNKVPVT  374 (449)
T ss_dssp             CCCCHHHHHHHHTTCCCSEEESSSEEEEEEECCCHHHHHHHHHHHHHHHSSHHHHHHHHHHTTTCCHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHhhhcccCcccCcCCceEeecCCCCCcHHHHHHHHHHHHHHhhHHhhhhhHhhcCCcCHHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999999987777777777888876644445599999


Q ss_pred             CCCCccCCccHHHHHHHHHHHHHHhhhhcCCchhchHHHHHHHHHcCCChHHHHHHHHcCccccChHHHHhhhcC
Q 016072          322 GLKTPFRDGLLRHVAQDVLKLSKDGLERRGFKETGFLNEVAEVVRTGVTPAEKLLDMYHGKWRESVDPVFEELLY  396 (396)
Q Consensus       322 Gl~a~~~~~~~~~~~~~Ll~~a~~~L~~~g~~e~~~L~~l~~~l~~g~t~A~~q~~~~~~~~~~vv~~~~~~~~~  396 (396)
                      ||+|.+.+.++.+++.+||+.++++|+++|..+..+|+.|.+++++|+|+|+||++.|+++|.++|+.+++|++|
T Consensus       375 Gl~a~~~~~~~~~~~~~ll~~a~~~L~~~g~~~~~~l~~l~~~~~~g~t~A~~~l~~~~~~~~~~v~~~~~~~~~  449 (449)
T 2gwd_A          375 GLKTPFRDGLLKHVAEDVLKLAKDGLERRGYKEVGFLNAVTEVVRTGVTPAENLLEMYNGEWGQSVDPVFQELLY  449 (449)
T ss_dssp             GGGSEETTEEHHHHHHHHHHHHHHHHHHHTSCCGGGGHHHHHHHHHTCCHHHHHHHHHHTTTTTCSTTHHHHTBC
T ss_pred             ccCCccCCCcHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCHHHHHHHHHhccccCcHHHHHHHhcC
Confidence            999999889999999999999999999999776679999999999999999999999999999999999999987

PyMOL of 2gwd

>1r8g_A Hypothetical protein YBDK; structural genomics, unknown function, carboxylate-amine ligase, structure 2 function project, S2F; 2.15A {Escherichia coli} SCOP: d.128.1.3 PDB: 1tt4_A	Back alignment and structure

>3ln6_A Glutathione biosynthesis bifunctional protein GSH; gamma-glutamyl cysteine ligase domain, ATP-grAsp domain, HYB enzyme; 2.95A {Streptococcus agalactiae serogroup V}	Back alignment and structure

>1va6_A Glutamate--cysteine ligase; glutathione homeostasis, beta barrel, peptide synthesis, transition state analogue; HET: P2S ADP P6G; 2.10A {Escherichia coli} SCOP: d.128.1.4 PDB: 1v4g_A* 2d32_A* 2d33_A*	Back alignment and structure

>3ln7_A Glutathione biosynthesis bifunctional protein GSH; gamma-glutamylcysteine ligase domain, ATP-grAsp domain, HYBR enzyme, ATP-binding; 3.20A {Pasteurella multocida}	Back alignment and structure

>3nzt_A Glutamate--cysteine ligase; structural genomics, center for structural genomics of infec diseases, csgid, alpha and beta proteins; HET: AMP; 2.00A {Francisella tularensis subsp}	Back alignment and structure

>3ig5_A Glutamate-cysteine ligase; glutathione, ATP-grAsp, ATP-binding, glutathione biosynthesis, nucleotide-binding, phosphoprotein; HET: GLU PGE; 2.10A {Saccharomyces cerevisiae} PDB: 3ig8_A* 3lvv_A* 3lvw_A*	Back alignment and structure

>3fky_A Glutamine synthetase; beta-grAsp, catalytic domain, acetylation, cytoplasm, ligase, UBL conjugation; HET: FLC; 2.95A {Saccharomyces cerevisiae}	Back alignment and structure

>2d3a_A Glutamine synthetase; ligase; HET: P3S ADP; 2.63A {Zea mays} PDB: 2d3b_A* 2d3c_A*	Back alignment and structure

>1f52_A Glutamine synthetase; ADP, MPD, ligase; HET: ADP; 2.49A {Salmonella typhimurium} SCOP: d.15.9.1 d.128.1.1 PDB: 1f1h_A* 1fpy_A* 1lgr_A* 2lgs_A* 2gls_A	Back alignment and structure

>4hpp_A Probable glutamine synthetase; glutamine synthase homolog, glutamate, polyamine, ligase; HET: GLU; 2.50A {Pseudomonas aeruginosa}	Back alignment and structure

>2ojw_A Glutamine synthetase; amino-acid biosynthesis, ligase, structural GENO structural genomics consortium, SGC; HET: ADP; 2.05A {Homo sapiens} PDB: 2qc8_A* 2uu7_A	Back alignment and structure

>3ng0_A Glutamine synthetase; GSI, nitrogen metabolism, synec ligase; HET: ANP; 2.80A {Synechocystis SP}	Back alignment and structure

>4acf_A Glutamine synthetase 1; ligase, nucleotide-binding, TRI-substituted IMID TAUT state, RV2220, GLNA1; HET: 46B P3S; 2.00A {Mycobacterium tuberculosis} PDB: 2wgs_A* 2whi_A* 3zxr_A* 3zxv_A* 2bvc_A* 1hto_A* 1htq_A*	Back alignment and structure

>3o6x_A Glutamine synthetase; type III, beta barrel,dodecamer, ligas; HET: P3S ADP; 3.50A {Bacteroides fragilis}	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		396
d1r8ga_		368	d.128.1.3 (A:) Carboxylate-amine ligase YbdK {Esch	4e-57

>d1r8ga_ d.128.1.3 (A:) Carboxylate-amine ligase YbdK {Escherichia coli [TaxId: 562]} Length = 368	Back information, alignment and structure


class: Alpha and beta proteins (a+b)
fold: Glutamine synthetase/guanido kinase
superfamily: Glutamine synthetase/guanido kinase
family: Glutamate-cysteine ligase family 2 (GCS2)
domain: Carboxylate-amine ligase YbdK
species: Escherichia coli [TaxId: 562]

 Score =  189 bits (480), Expect = 4e-57
 Identities = 49/359 (13%), Positives = 99/359 (27%), Gaps = 43/359 (11%)

Query: 37  SISLE-PGGQFELSGAPLETLHQTCAEVNSHLYQVKAVAEEMGIGFLGIGFQPKWGLKDI 95
            +  +      EL+      ++Q   + ++    V   A +  +   G G  P    +  
Sbjct: 47  EVKHDITESMLELATDVCRDINQAAGQFSAMQKVVLQAATDHHLEICGGGTHPFQKWQRQ 106

Query: 96  PVMPKGRYEIMRNYMPKVGSLGLDMMFRTCTVQVNLDFSSEADMIRKFRAGLALQPIATA 155
            V    RY+        +               V++  +S  D I          P   A
Sbjct: 107 EVCDNERYQRTLENFGYLI-----QQATVFGQHVHVGCASGDDAIYLLHGLSRFVPHFIA 161

Query: 156 LFANSPFTEGKPNGYLSMRSHIWTDTDNNRAGMLPFVFDDSFGFEQYVDYALDVPMYFVY 215
           L A SP+ +G    + S R +I++   +N          +   FE          M    
Sbjct: 162 LSAASPYMQGTDTRFASSRPNIFSAFPDN---GPMPWVSNWQQFEALFRCLSYTTMIDSI 218

Query: 216 RKKKYIDCAGMSFRDFLAGKLPCLPGELPTLNDWENHLTTIFPEVRLKRYLEMRGADGGP 275
           +   + D         +  ++   P    TL+           +      L  R      
Sbjct: 219 K-DLHWDIRPSPHFGTVEVRVMDTP---LTLSHA--VNMAGLIQATAHWLLTERPFKHQE 272

Query: 276 WRRLCALPAFWVGLLYDEDSLQNVLDMTADWTTGERQMLRNKVPKTGLKTPFRDGLLRHV 335
              L      +    Y  + +        D  TG+R+                   L   
Sbjct: 273 KDYLLYKFNRFQACRYGLEGVI------TDPHTGDRR------------------PLTED 308

Query: 336 AQDVLKLSKDGLERRGFKETGFLNEVAEVVRTGVTPAEKLLDMYHGKWRESVDPVFEEL 394
              +L+       + G   +  +  +   V +G+  A+ + D        S+  + ++ 
Sbjct: 309 TLRLLEKIAPSAHKIG--ASSAIEALHRQVVSGLNEAQLMRDFVAD--GGSLIGLVKKH 363

PyMOL of d1r8ga_

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		396
d1r8ga_		368	Carboxylate-amine ligase YbdK {Escherichia coli [T	100.0
d2d32a1		518	Gamma-glutamylcysteine synthetase GshA {Escherichi	98.76
d1f52a2		368	Glutamine synthetase, C-terminal domain {Salmonell	87.16
d2bvca2		374	Glutamine synthetase, C-terminal domain {Mycobacte	80.8

>d1r8ga_ d.128.1.3 (A:) Carboxylate-amine ligase YbdK {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: Glutamine synthetase/guanido kinase
superfamily: Glutamine synthetase/guanido kinase
family: Glutamate-cysteine ligase family 2 (GCS2)
domain: Carboxylate-amine ligase YbdK
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=2.5e-54  Score=426.84  Aligned_cols=310  Identities=15%  Similarity=0.095  Sum_probs=256.8

Q ss_pred             Ccceeecc-CceEEeecCcccCHHHHHHHHHHHHHHHHHHHHHcCCeEEeccCCCCCCCCCCCCCCcHHHHHHHHhcccc
Q 016072           35 KQSISLEP-GGQFELSGAPLETLHQTCAEVNSHLYQVKAVAEEMGIGFLGIGFQPKWGLKDIPVMPKGRYEIMRNYMPKV  113 (396)
Q Consensus        35 ~~~i~~Ep-~~qiE~~t~p~~~~~~l~~~l~~~l~~l~~~a~~~g~~l~~~G~~P~~~~~~~~~~p~~RY~~m~~~~~~~  113 (396)
                      +..|+.|. ++|||++|+||+++.++.++|.+.++.+.++++++|+.+++.|+||+..+.+++++|++||+.|.++++  
T Consensus        45 ~~~i~~El~~~qiEl~t~p~~~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~g~~P~~~~~~~~~~~~~ry~~~~~~~~--  122 (368)
T d1r8ga_          45 AGEVKHDITESMLELATDVCRDINQAAGQFSAMQKVVLQAATDHHLEICGGGTHPFQKWQRQEVCDNERYQRTLENFG--  122 (368)
T ss_dssp             SSEEEECSSSSEEEEECCSBSSHHHHHHHHHHHHHHHHHHHHHTTCEEECCSBCSSCCC----------------CCG--
T ss_pred             CCccccccCCceEEEcCCCCCCHHHHHHHHHHHHHHHHHHHhhcCCcccccCcccccCcccccCCccHHHHHHHHhcC--
Confidence            46799995 699999999999999999999999999999999999999999999999999999999999999999884  


Q ss_pred             ccchhhhhcccceeEeeeCCCChHHHHHHHHHHhhhHHHHHHHhhCCCCCCCCCCCCccchHHHHhcCCCCCCCCCCCCC
Q 016072          114 GSLGLDMMFRTCTVQVNLDFSSEADMIRKFRAGLALQPIATALFANSPFTEGKPNGYLSMRSHIWTDTDNNRAGMLPFVF  193 (396)
Q Consensus       114 g~~g~~~~~~~~s~qVhv~~~~~~~~~~~~n~~~~~~P~l~ALsaNSP~~~G~~tg~~s~R~~iw~~~~~~r~g~~p~~f  193 (396)
                       ..++.||  +||+||||++++++++++++|.++.+.|+++|||||||||+|++|||+|+|..+|++++   ++++|..|
T Consensus       123 -~~~~~~~--~~g~hv~~~~~d~~~~~~~~~~~~~~~p~l~aL~anSP~~~G~~tg~~s~R~~~~~~~~---~~~~~~~~  196 (368)
T d1r8ga_         123 -YLIQQAT--VFGQHVHVGCASGDDAIYLLHGLSRFVPHFIALSAASPYMQGTDTRFASSRPNIFSAFP---DNGPMPWV  196 (368)
T ss_dssp             -GGGCSCC--BCEEEEEEECSSHHHHHHHHHHHHTTHHHHHHHHCCBCEETTEECSCSBCGGGGGTTST---TCSSCCCC
T ss_pred             -cHHHHHh--hcccceeecCCCHHHHHHHHHHHHHHhHHHHHHhcCchhhcCcCCCCcCCchhHHhcCC---cccccccc
Confidence             4577777  99999999999999999999999999999999999999999999999999999999997   55578899


Q ss_pred             CCchhHHHHHHHHhcCcceeeeecCccccCCCCcHHHHhhCCCCCCCCCCCChhhhhhhhcCCCCccccc---cceeecc
Q 016072          194 DDSFGFEQYVDYALDVPMYFVYRKKKYIDCAGMSFRDFLAGKLPCLPGELPTLNDWENHLTTIFPEVRLK---RYLEMRG  270 (396)
Q Consensus       194 ~~~~~~~~y~~~l~~~p~~~~~~~g~~i~~~~~~~~d~~~~~~~~~~g~rp~~~~~~~~lst~~p~vR~~---g~IEiR~  270 (396)
                      .++..|++|++.++++        |. +                             .|.+++|++|||+   +|||+|+
T Consensus       197 ~~~~~~~~~~~~~~~~--------~~-~-----------------------------~~~~~~~~~vRp~~~~~~iEiR~  238 (368)
T d1r8ga_         197 SNWQQFEALFRCLSYT--------TM-I-----------------------------DSIKDLHWDIRPSPHFGTVEVRV  238 (368)
T ss_dssp             SSHHHHHHHHHHHTTS--------SS-C-----------------------------SSGGGCCCSEEEETTTTEEEEEE
T ss_pred             cchhhHHHHHHHHHhc--------cc-c-----------------------------ccCCeeeeecCCccccCcccccC
Confidence            9999999999999986        32 2                             2456789999997   6899999


Q ss_pred             CCCCc-hhhhchHHHHHHHhhcChhhhhh-hhhcCCCccHHHHHHHhhhhhhcCCCCccC------CccHHHHHHHHHHH
Q 016072          271 ADGGP-WRRLCALPAFWVGLLYDEDSLQN-VLDMTADWTTGERQMLRNKVPKTGLKTPFR------DGLLRHVAQDVLKL  342 (396)
Q Consensus       271 ~D~~p-~~~~~a~aAl~~gL~~~~~~~~~-~~~~~~~~~~~~~~~~~~~aar~Gl~a~~~------~~~~~~~~~~Ll~~  342 (396)
                      +|++| +++.+++++|+.+++........ .......+...+|+|   +|+|+|+++.+.      ..++++++.+||+.
T Consensus       239 ~D~~p~~~~~~~~aa~~~~l~~~l~~~~~~~~~~~~~~~~~~n~~---~aar~Gl~~~l~~~~~~~~~~~~~~~~~Ll~~  315 (368)
T d1r8ga_         239 MDTPLTLSHAVNMAGLIQATAHWLLTERPFKHQEKDYLLYKFNRF---QACRYGLEGVITDPHTGDRRPLTEDTLRLLEK  315 (368)
T ss_dssp             EECCSSHHHHHHHHHHHHHHHHHHHHHCCCCCCGGGGTTHHHHHH---HHHHHGGGSEEECTTTCCEEEHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHhhHHHHHHHHHHhcCCCCcchhhHHHHHHHHH---HHHhhcccccccccCCCcEeEHHHHHHHHHHH
Confidence            99999 79999999999999755443221 112223445667888   899999998552      23899999999999


Q ss_pred             HHHhhhhcCCchhchHHHHHHHHHcCCChHHHHHHHHc--CccccChHHHHhhhc
Q 016072          343 SKDGLERRGFKETGFLNEVAEVVRTGVTPAEKLLDMYH--GKWRESVDPVFEELL  395 (396)
Q Consensus       343 a~~~L~~~g~~e~~~L~~l~~~l~~g~t~A~~q~~~~~--~~~~~vv~~~~~~~~  395 (396)
                      ++++|+++|+.  .||+++.+++++|+|+|+||++.|+  |++.+||+.+++..|
T Consensus       316 ~~~~l~~lg~~--~~l~~l~~~v~~g~t~A~~lr~~~~~~gsl~~~v~~~~e~~~  368 (368)
T d1r8ga_         316 IAPSAHKIGAS--SAIEALHRQVVSGLNEAQLMRDFVADGGSLIGLVKKHCEIWA  368 (368)
T ss_dssp             SHHHHHHHTCH--HHHHHHHHHHHHCCCHHHHHHHHHHTTCCHHHHHHHHHHHHC
T ss_pred             HHHHHHHCCCH--HHHHHHHHHHHhCCCHHHHHHHHHHcCCCHHHHHHHHHHHhC
Confidence            99999999965  4899999999999999999999995  799999999998765

PyMOL of d1r8ga_

>d2d32a1 d.128.1.4 (A:1-518) Gamma-glutamylcysteine synthetase GshA {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1f52a2 d.128.1.1 (A:101-468) Glutamine synthetase, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}	Back information, alignment and structure

>d2bvca2 d.128.1.1 (A:105-478) Glutamine synthetase, C-terminal domain {Mycobacterium tuberculosis [TaxId: 1773]}	Back information, alignment and structure